BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016017
(396 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225463572|ref|XP_002270172.1| PREDICTED: F-box/LRR-repeat protein 14 [Vitis vinifera]
gi|297743556|emb|CBI36423.3| unnamed protein product [Vitis vinifera]
Length = 578
Score = 580 bits (1494), Expect = e-163, Method: Compositional matrix adjust.
Identities = 310/394 (78%), Positives = 354/394 (89%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
MLPRDISQQIFNELV+S+CLT+VSL+AF+DCALQD+ LG+YPGV+D WMDVI+SQG SLL
Sbjct: 76 MLPRDISQQIFNELVFSQCLTDVSLKAFQDCALQDIYLGEYPGVSDSWMDVISSQGVSLL 135
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVDLSGS++T+SGLIHLKDC+NLQ+L+ N+C QISD GL+H+ GLSNLT+LSFRRNNAIT
Sbjct: 136 SVDLSGSEITNSGLIHLKDCTNLQALNLNYCDQISDHGLKHISGLSNLTTLSFRRNNAIT 195
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
AQGM AF+ L+NLVKLDLERC IHGGL++LKGL KLESLNI C+CITD+D+KPLSGLT
Sbjct: 196 AQGMSAFSSLVNLVKLDLERCPGIHGGLIHLKGLTKLESLNINMCHCITDADLKPLSGLT 255
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
NLK L+IS SKVTD G+AYLKGL KL LLN+EGCPVTAACL+SLS L SL LNLNR L
Sbjct: 256 NLKGLEISRSKVTDDGVAYLKGLHKLALLNMEGCPVTAACLESLSDLPSLLSLNLNRSML 315
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
SDDGCE F++ +L+VLNLGFN++TD CLVHLKGLTNLESLNLDSC I DEGL NLTGL
Sbjct: 316 SDDGCENFARQENLRVLNLGFNDLTDACLVHLKGLTNLESLNLDSCRICDEGLANLTGLR 375
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
+LKCLELSDT+VGS+GLRHLSGL NLESINLSFT ++D LRKL+ LSSLKSLNLDARQI
Sbjct: 376 HLKCLELSDTEVGSNGLRHLSGLANLESINLSFTAVTDSGLRKLSALSSLKSLNLDARQI 435
Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRS 394
TD GLAALTSLTGLTHLDLFGARITDSG +YLR+
Sbjct: 436 TDAGLAALTSLTGLTHLDLFGARITDSGTSYLRN 469
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 83/236 (35%), Positives = 135/236 (57%), Gaps = 4/236 (1%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
++ +L ++L +D+TD+ L+HLK +NL+SL+ + C +I D GL +L GL +L L
Sbjct: 324 ARQENLRVLNLGFNDLTDACLVHLKGLTNLESLNLDSC-RICDEGLANLTGLRHLKCLEL 382
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
+ + + G++ +GL NL ++L GL L L L+SLN+ ITD+ +
Sbjct: 383 S-DTEVGSNGLRHLSGLANLESINLSFTAVTDSGLRKLSALSSLKSLNLD-ARQITDAGL 440
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
L+ LT L L + +++TDSG +YL+ + L L + G +T A + ++ L L L
Sbjct: 441 AALTSLTGLTHLDLFGARITDSGTSYLRNFKNLQSLEICGGGLTDAGVKNIKDLTCLTVL 500
Query: 234 NLNR-CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 288
NL++ C L+D E S + +L L++ + IT+ L HLK L NL+SL LDSC +
Sbjct: 501 NLSQNCNLTDKSLELISGLTALVSLSVSNSRITNAGLQHLKQLKNLKSLTLDSCKV 556
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 88/181 (48%), Gaps = 26/181 (14%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI-----------------------QISDGG 98
++LS ++V +GL HL +NL+S++ +F QI+D G
Sbjct: 380 LELSDTEVGSNGLRHLSGLANLESINLSFTAVTDSGLRKLSALSSLKSLNLDARQITDAG 439
Query: 99 LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158
L L L+ LT L IT G NL L++ G+ N+K L L
Sbjct: 440 LAALTSLTGLTHLDLF-GARITDSGTSYLRNFKNLQSLEICGGGLTDAGVKNIKDLTCLT 498
Query: 159 SLNIKWCNC-ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
LN+ NC +TD ++ +SGLT L SL +S S++T++G+ +LK L+ L L L+ C VT
Sbjct: 499 VLNLSQ-NCNLTDKSLELISGLTALVSLSVSNSRITNAGLQHLKQLKNLKSLTLDSCKVT 557
Query: 218 A 218
Sbjct: 558 V 558
>gi|449436168|ref|XP_004135866.1| PREDICTED: F-box/LRR-repeat protein 14-like [Cucumis sativus]
gi|449509305|ref|XP_004163550.1| PREDICTED: F-box/LRR-repeat protein 14-like [Cucumis sativus]
Length = 578
Score = 572 bits (1473), Expect = e-160, Method: Compositional matrix adjust.
Identities = 300/394 (76%), Positives = 347/394 (88%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
MLPRD+SQ I NELVYS+ LT++S++AFRDCALQDL G+ PGVND W+DVI+SQGSS+L
Sbjct: 76 MLPRDLSQLILNELVYSQLLTDISIQAFRDCALQDLHFGECPGVNDAWIDVISSQGSSVL 135
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVDLSGS+VTDSGL++L++CSNLQSL+ NFC ISD GL H+ G S LTSLSFR+N+ IT
Sbjct: 136 SVDLSGSEVTDSGLMNLRNCSNLQSLNLNFCEHISDRGLAHIGGFSRLTSLSFRKNSEIT 195
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
AQGM FA L+NL++LDLE+C IHGGLV+L+GL KLESLNIKWCNCITDSD+KPLSGLT
Sbjct: 196 AQGMSVFAHLVNLIRLDLEKCPGIHGGLVHLQGLRKLESLNIKWCNCITDSDIKPLSGLT 255
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
NLK LQISCSKVTD+GIAYLKGL KL+LLNLEGCPVTAACL +LSALG+L YLNL+RC +
Sbjct: 256 NLKGLQISCSKVTDAGIAYLKGLHKLSLLNLEGCPVTAACLYTLSALGALQYLNLSRCHI 315
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
+DDG E+FS +G+LK+LNLGFN+ITDECLVHLKGLTNLESLNLDSC I D+GLVNL L
Sbjct: 316 TDDGSEQFSGLGALKILNLGFNDITDECLVHLKGLTNLESLNLDSCRIEDDGLVNLKALH 375
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
LKCLELSDT VGS+GLRHLSGL NLE +NLSFT ++D L+KL+GLSSLKSLNLD RQI
Sbjct: 376 RLKCLELSDTDVGSNGLRHLSGLFNLEKLNLSFTVVTDIGLKKLSGLSSLKSLNLDTRQI 435
Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRS 394
TD GLA+LT L GLTHLDLFGARITDSG YLR+
Sbjct: 436 TDIGLASLTGLVGLTHLDLFGARITDSGTNYLRN 469
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 89/188 (47%), Gaps = 24/188 (12%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI-----------------------QISDGG 98
++LS +DV +GL HL NL+ L+ +F + QI+D G
Sbjct: 380 LELSDTDVGSNGLRHLSGLFNLEKLNLSFTVVTDIGLKKLSGLSSLKSLNLDTRQITDIG 439
Query: 99 LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158
L L GL LT L IT G NL L++ G+ N+K L L
Sbjct: 440 LASLTGLVGLTHLDLF-GARITDSGTNYLRNFKNLQSLEICGGGLTDAGVKNIKDLSSLM 498
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
LN+ +TD ++ +SGLT L SL IS S++T +G+ +LK L+ L L LE C V+A
Sbjct: 499 VLNLSQNGNLTDKSLELISGLTGLVSLNISNSRITSAGLRHLKTLKNLKQLTLEACRVSA 558
Query: 219 ACLDSLSA 226
+ + L +
Sbjct: 559 SDIKKLQS 566
>gi|297844484|ref|XP_002890123.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp.
lyrata]
gi|297335965|gb|EFH66382.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 578
Score = 570 bits (1469), Expect = e-160, Method: Compositional matrix adjust.
Identities = 297/394 (75%), Positives = 346/394 (87%), Gaps = 1/394 (0%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
LPRDISQQIF+ELVYS+ LT SLEAFRDCA+QDLCLG+YPGVND WMDVI+SQ +SLLS
Sbjct: 76 LPRDISQQIFDELVYSQRLTLKSLEAFRDCAIQDLCLGEYPGVNDDWMDVISSQSTSLLS 135
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
VD SGSD+TDSGL+ LK C+NL+SL+FNFC QIS+ GLEHL GLSNLTSLSFRRN AITA
Sbjct: 136 VDFSGSDITDSGLVSLKGCTNLESLNFNFCDQISNRGLEHLSGLSNLTSLSFRRNAAITA 195
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
QGM+A + L+N+ KLDLE+C IHGGLV+L+GL KLESLNIKWCNCITD+DM+PLS LTN
Sbjct: 196 QGMRALSNLVNMKKLDLEKCPGIHGGLVHLRGLTKLESLNIKWCNCITDADMEPLSELTN 255
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQL 240
L+SLQI CS++TD GI+YLKGL KL LLNLEGC VTAACLD+L+AL L +LNLNRC
Sbjct: 256 LRSLQICCSRITDIGISYLKGLNKLNLLNLEGCRHVTAACLDTLTALTGLMFLNLNRCNF 315
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
SD GCEKFS + +LK+LNLG N IT+ CLVHL+GLT LESLNLDSC IGDEGLV+L+G+
Sbjct: 316 SDSGCEKFSDLINLKILNLGMNSITNSCLVHLRGLTKLESLNLDSCRIGDEGLVHLSGML 375
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
LK LELSDT+VGS+GLRHLSGL+NLESINLSFT ++D LRKL+GL+SL++LNLDAR +
Sbjct: 376 ELKSLELSDTEVGSNGLRHLSGLSNLESINLSFTVVTDSGLRKLSGLTSLRTLNLDARHV 435
Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRS 394
TD GL+ALTSLTGLTHLDLFGARITDSG +LR+
Sbjct: 436 TDAGLSALTSLTGLTHLDLFGARITDSGTNHLRN 469
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 101/192 (52%), Gaps = 26/192 (13%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L S++LS ++V +GL HL SNL+S++ +F + ++D GL L GL++L +L+ +
Sbjct: 377 LKSLELSDTEVGSNGLRHLSGLSNLESINLSFTV-VTDSGLRKLSGLTSLRTLNLDARH- 434
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL-------------NIK-- 163
+T G+ A L L LDL G +L+ L KL+SL NIK
Sbjct: 435 VTDAGLSALTSLTGLTHLDLFGARITDSGTNHLRNLKKLQSLEICGGGLTDTGVKNIKDL 494
Query: 164 ---------WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 214
+ +TD ++ +SGLT L SL +S S+V+ SG+ +LK L+ L L LE C
Sbjct: 495 SSLTLLNLSQNSNLTDKTLELISGLTGLVSLNVSNSRVSSSGLRHLKPLKNLRSLTLESC 554
Query: 215 PVTAACLDSLSA 226
++A + L A
Sbjct: 555 KLSANDIRKLQA 566
>gi|359484681|ref|XP_002262830.2| PREDICTED: insulin-like growth factor-binding protein complex acid
labile subunit-like [Vitis vinifera]
gi|296084545|emb|CBI25566.3| unnamed protein product [Vitis vinifera]
Length = 578
Score = 570 bits (1468), Expect = e-160, Method: Compositional matrix adjust.
Identities = 291/393 (74%), Positives = 338/393 (86%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
MLPRDISQQIF+ V S CLT SLEAFRDCA+QD+ LG+YP VND WMD+I+SQG SLL
Sbjct: 76 MLPRDISQQIFDNFVDSHCLTSASLEAFRDCAIQDVNLGEYPEVNDSWMDIISSQGLSLL 135
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVDLSGS VTD GL LKDCSN+Q L FN+C QIS+ GL+++ GLSNLTSLSF+++N +T
Sbjct: 136 SVDLSGSSVTDDGLSLLKDCSNIQVLSFNYCDQISEPGLKNISGLSNLTSLSFKKSNTVT 195
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
A+GM+AF+ L+NL KLDLERC+RIHGGL++LKGL KLESLNI++C CITDSD+K LSGLT
Sbjct: 196 AEGMRAFSSLVNLAKLDLERCSRIHGGLIHLKGLTKLESLNIRYCKCITDSDLKALSGLT 255
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
+LK LQ+SCS +TD GI+YLKGL KL LL++EGC VT +CLDSLSAL +L YLNLNRC L
Sbjct: 256 SLKELQMSCSNITDIGISYLKGLCKLMLLDVEGCHVTTSCLDSLSALVALSYLNLNRCGL 315
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
SD GCEKFS + +LKVLN+GFN ITD CLVHLKGLTNLESLNLDSC I DEGL NLTGL
Sbjct: 316 SDVGCEKFSGLKNLKVLNMGFNNITDACLVHLKGLTNLESLNLDSCSIEDEGLANLTGLS 375
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
LKCLELSDT+VGS+GL HLSGLT LES+NLSFT ++D L+KL GL+SLKSLNLDARQI
Sbjct: 376 LLKCLELSDTKVGSNGLCHLSGLTKLESLNLSFTLVTDSGLKKLCGLTSLKSLNLDARQI 435
Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
TD GLAA+TSLTGLTHLDLFGARI+D+G LR
Sbjct: 436 TDAGLAAITSLTGLTHLDLFGARISDAGTNCLR 468
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 112/332 (33%), Positives = 177/332 (53%), Gaps = 9/332 (2%)
Query: 16 YSRCLTEVSLEAFRD-CALQDLCLGQYPGVNDKWMDVIASQG-SSLLSVDLSGSDVTDSG 73
Y +C+T+ L+A +L++L Q N + + +G L+ +D+ G VT S
Sbjct: 239 YCKCITDSDLKALSGLTSLKEL---QMSCSNITDIGISYLKGLCKLMLLDVEGCHVTTSC 295
Query: 74 LIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINL 133
L L L L+ N C +SD G E GL NL L+ NN IT + GL NL
Sbjct: 296 LDSLSALVALSYLNLNRC-GLSDVGCEKFSGLKNLKVLNMGFNN-ITDACLVHLKGLTNL 353
Query: 134 VKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT 193
L+L+ C+ GL NL GL L+ L + + + + LSGLT L+SL +S + VT
Sbjct: 354 ESLNLDSCSIEDEGLANLTGLSLLKCLELSDTK-VGSNGLCHLSGLTKLESLNLSFTLVT 412
Query: 194 DSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS 253
DSG+ L GL L LNL+ +T A L ++++L L +L+L ++SD G +
Sbjct: 413 DSGLKKLCGLTSLKSLNLDARQITDAGLAAITSLTGLTHLDLFGARISDAGTNCLRHFKN 472
Query: 254 LKVLNLGFNEITDECLVHLKGLTNLESLNL-DSCGIGDEGLVNLTGLCNLKCLELSDTQV 312
L+ L + +TD + ++KGL +L LNL +C + D+ L ++GL L L +S++++
Sbjct: 473 LQTLEICGGGLTDAGVKNIKGLASLTLLNLSQNCNLTDKTLEMISGLTALVSLNVSNSRI 532
Query: 313 GSSGLRHLSGLTNLESINLSFTGISDGSLRKL 344
++GL+HL L NL S++L ++ +RKL
Sbjct: 533 TNNGLQHLKPLKNLLSLSLESCKVTASEIRKL 564
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 75/231 (32%), Positives = 115/231 (49%), Gaps = 40/231 (17%)
Query: 14 LVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSG 73
LV+ + LT + C+++D L G+ S L ++LS + V +G
Sbjct: 344 LVHLKGLTNLESLNLDSCSIEDEGLANLTGL------------SLLKCLELSDTKVGSNG 391
Query: 74 LIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINL 133
L HL + L+SL+ +F + ++D GL+ L GL++L SL+ IT G+ A L L
Sbjct: 392 LCHLSGLTKLESLNLSFTL-VTDSGLKKLCGLTSLKSLNLDARQ-ITDAGLAAITSLTGL 449
Query: 134 VKLDL---------ERCTR---------------IHGGLVNLKGLMKLESLNIKWCNC-I 168
LDL C R G+ N+KGL L LN+ NC +
Sbjct: 450 THLDLFGARISDAGTNCLRHFKNLQTLEICGGGLTDAGVKNIKGLASLTLLNLSQ-NCNL 508
Query: 169 TDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
TD ++ +SGLT L SL +S S++T++G+ +LK L+ L L+LE C VTA+
Sbjct: 509 TDKTLEMISGLTALVSLNVSNSRITNNGLQHLKPLKNLLSLSLESCKVTAS 559
>gi|30684506|ref|NP_563980.2| leucine-rich repeat-containing protein [Arabidopsis thaliana]
gi|23297087|gb|AAN13089.1| unknown protein [Arabidopsis thaliana]
gi|332191234|gb|AEE29355.1| leucine-rich repeat-containing protein [Arabidopsis thaliana]
Length = 585
Score = 562 bits (1448), Expect = e-157, Method: Compositional matrix adjust.
Identities = 297/394 (75%), Positives = 342/394 (86%), Gaps = 1/394 (0%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
LPRDISQQIF+ELVYS+ LT SLEAFRDCA+QDL LG+YPGVND WMDVI+SQ +SLLS
Sbjct: 83 LPRDISQQIFDELVYSQRLTLKSLEAFRDCAIQDLYLGEYPGVNDDWMDVISSQSTSLLS 142
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
VD SGSD+TDSGL+ LK C+NL+SL+FNFC QIS+ GL HL GLSNLTSLSFRRN AITA
Sbjct: 143 VDFSGSDITDSGLVSLKGCTNLESLNFNFCDQISNRGLVHLSGLSNLTSLSFRRNAAITA 202
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
QGM+A + L+NL KLDLE+C I GGLV+L+ L KLESLNIKWCNCITD+DM+PLS LTN
Sbjct: 203 QGMRALSNLVNLKKLDLEKCPGIDGGLVHLRALTKLESLNIKWCNCITDADMEPLSVLTN 262
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQL 240
L+SLQI CSK+TD GI+YLKGL KL LLNLEGC VTAACLD+L+AL L YLNLNRC
Sbjct: 263 LRSLQICCSKITDIGISYLKGLNKLNLLNLEGCRHVTAACLDTLTALAGLMYLNLNRCNF 322
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
SD GCEKFS + +LK+LNLG N IT+ CLVHLKGLT LESLNLDSC IGDEGLV+L+G+
Sbjct: 323 SDSGCEKFSDLINLKILNLGMNNITNSCLVHLKGLTKLESLNLDSCRIGDEGLVHLSGML 382
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
LK LELSDT+VGS+GLRHLSGL+NLESINLSFT ++D LRKL+GL+SL++LNLDAR +
Sbjct: 383 ELKSLELSDTEVGSNGLRHLSGLSNLESINLSFTVVTDSGLRKLSGLTSLRTLNLDARHV 442
Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRS 394
TD GL+ALTSLTGLTHLDLFGARITDSG +LR+
Sbjct: 443 TDAGLSALTSLTGLTHLDLFGARITDSGTNHLRN 476
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 101/192 (52%), Gaps = 26/192 (13%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L S++LS ++V +GL HL SNL+S++ +F + ++D GL L GL++L +L+ +
Sbjct: 384 LKSLELSDTEVGSNGLRHLSGLSNLESINLSFTV-VTDSGLRKLSGLTSLRTLNLDARH- 441
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL-------------NIK-- 163
+T G+ A L L LDL G +L+ L KL+SL NIK
Sbjct: 442 VTDAGLSALTSLTGLTHLDLFGARITDSGTNHLRNLKKLQSLEICGGGLTDTGVKNIKDL 501
Query: 164 ---------WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 214
+ +TD ++ +SGLT L SL +S S+V+ SG+ +LK L+ L L LE C
Sbjct: 502 SSLTLLNLSQNSNLTDKTLELISGLTGLVSLNVSNSRVSSSGLRHLKPLKNLRSLTLESC 561
Query: 215 PVTAACLDSLSA 226
++A + L A
Sbjct: 562 KLSANDIRKLQA 573
>gi|13507547|gb|AAK28636.1|AF360339_1 unknown protein [Arabidopsis thaliana]
Length = 585
Score = 560 bits (1443), Expect = e-157, Method: Compositional matrix adjust.
Identities = 296/394 (75%), Positives = 341/394 (86%), Gaps = 1/394 (0%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
LPRDISQQIF+ELVYS+ LT SLEAFRDCA+QDL LG+YPGVND WMDVI+SQ +SLLS
Sbjct: 83 LPRDISQQIFDELVYSQRLTLKSLEAFRDCAIQDLYLGEYPGVNDDWMDVISSQSTSLLS 142
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
VD SGSD+TDSGL+ LK C+NL+SL+FNFC QIS+ GL HL GLSNLTSLSFRRN AITA
Sbjct: 143 VDFSGSDITDSGLVSLKGCTNLESLNFNFCDQISNRGLVHLSGLSNLTSLSFRRNAAITA 202
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
QGM+A + L+NL KLDLE+C I GGLV+L+ L KLESLNIKWCNCITD+DM+PLS LTN
Sbjct: 203 QGMRALSNLVNLKKLDLEKCPGIDGGLVHLRALTKLESLNIKWCNCITDADMEPLSVLTN 262
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQL 240
L+ LQI CSK+TD GI+YLKGL KL LLNLEGC VTAACLD+L+AL L YLNLNRC
Sbjct: 263 LRRLQICCSKITDIGISYLKGLNKLNLLNLEGCRHVTAACLDTLTALAGLMYLNLNRCNF 322
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
SD GCEKFS + +LK+LNLG N IT+ CLVHLKGLT LESLNLDSC IGDEGLV+L+G+
Sbjct: 323 SDSGCEKFSDLINLKILNLGMNNITNSCLVHLKGLTKLESLNLDSCRIGDEGLVHLSGML 382
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
LK LELSDT+VGS+GLRHLSGL+NLESINLSFT ++D LRKL+GL+SL++LNLDAR +
Sbjct: 383 ELKSLELSDTEVGSNGLRHLSGLSNLESINLSFTVVTDSGLRKLSGLTSLRTLNLDARHV 442
Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRS 394
TD GL+ALTSLTGLTHLDLFGARITDSG +LR+
Sbjct: 443 TDAGLSALTSLTGLTHLDLFGARITDSGTNHLRN 476
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 101/192 (52%), Gaps = 26/192 (13%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L S++LS ++V +GL HL SNL+S++ +F + ++D GL L GL++L +L+ +
Sbjct: 384 LKSLELSDTEVGSNGLRHLSGLSNLESINLSFTV-VTDSGLRKLSGLTSLRTLNLDARH- 441
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL-------------NIK-- 163
+T G+ A L L LDL G +L+ L KL+SL NIK
Sbjct: 442 VTDAGLSALTSLTGLTHLDLFGARITDSGTNHLRNLKKLQSLEICGGGLTDTGVKNIKDL 501
Query: 164 ---------WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 214
+ +TD ++ +SGLT L SL +S S+V+ SG+ +LK L+ L L LE C
Sbjct: 502 SSLTLLNLSQNSNLTDKTLELISGLTGLVSLNVSNSRVSSSGLRHLKPLKNLRSLTLESC 561
Query: 215 PVTAACLDSLSA 226
++A + L A
Sbjct: 562 KLSANDIRKLQA 573
>gi|356519276|ref|XP_003528299.1| PREDICTED: F-box/LRR-repeat protein 14-like isoform 1 [Glycine max]
Length = 577
Score = 559 bits (1441), Expect = e-157, Method: Compositional matrix adjust.
Identities = 307/396 (77%), Positives = 340/396 (85%), Gaps = 1/396 (0%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
MLPRDISQ IFN LVYSR LT SLEAFRDCALQDL LG+Y GVND WM VI+SQGSSLL
Sbjct: 75 MLPRDISQLIFNNLVYSRRLTSASLEAFRDCALQDLYLGEYDGVNDNWMGVISSQGSSLL 134
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVDLSGSDVTD GL +LKDC +L SL+ N+C QISD GLE + GLSNLTSLSFRRN++I+
Sbjct: 135 SVDLSGSDVTDFGLTYLKDCESLISLNLNYCDQISDRGLECISGLSNLTSLSFRRNDSIS 194
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
AQGM AF+GL+NLVKLDLERC IHGGLV+L+GL KLESLN+KWCNCITD DMKPLS L
Sbjct: 195 AQGMSAFSGLVNLVKLDLERCPGIHGGLVHLRGLTKLESLNLKWCNCITDYDMKPLSELA 254
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
+LKSL+IS SKVTD GI++LKGLQKL LLNLEGC VTAACLDSL+ L +L LNLNRC L
Sbjct: 255 SLKSLEISSSKVTDFGISFLKGLQKLALLNLEGCLVTAACLDSLAELPALSNLNLNRCNL 314
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
SD+GC+K S++ +LKVLNLGFN ITD CLVHLKGLT LESLNLDSC IGDEGLVNL GL
Sbjct: 315 SDNGCKKISRLENLKVLNLGFNVITDACLVHLKGLTKLESLNLDSCKIGDEGLVNLAGLE 374
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
L CLELSDT+VGS+GL HLSGL++L+ INLSFT ISD SLRKL+GLSSLKSLNLDA QI
Sbjct: 375 QLNCLELSDTEVGSNGLHHLSGLSSLQKINLSFTMISDSSLRKLSGLSSLKSLNLDAYQI 434
Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRSKF 396
TD GLA LTSLTGLT LDLFGARITD G YL+ KF
Sbjct: 435 TDAGLANLTSLTGLTDLDLFGARITDFGTNYLK-KF 469
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 102/341 (29%), Positives = 160/341 (46%), Gaps = 57/341 (16%)
Query: 38 LGQYPGVNDKWMDVIA-------SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNF 90
L + +N KW + I S+ +SL S+++S S VTD G+ LK L L+
Sbjct: 228 LTKLESLNLKWCNCITDYDMKPLSELASLKSLEISSSKVTDFGISFLKGLQKLALLNLEG 287
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN 150
C+ ++ L+ L L L++L+ R N ++ G K + L NL L+L LV+
Sbjct: 288 CL-VTAACLDSLAELPALSNLNLNRCN-LSDNGCKKISRLENLKVLNLGFNVITDACLVH 345
Query: 151 LKGLMKLESLNIKWC----------------NCITDSD-------MKPLSGLTNLKSLQI 187
LKGL KLESLN+ C NC+ SD + LSGL++L+ + +
Sbjct: 346 LKGLTKLESLNLDSCKIGDEGLVNLAGLEQLNCLELSDTEVGSNGLHHLSGLSSLQKINL 405
Query: 188 SCS------------------------KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
S + ++TD+G+A L L LT L+L G +T +
Sbjct: 406 SFTMISDSSLRKLSGLSSLKSLNLDAYQITDAGLANLTSLTGLTDLDLFGARITDFGTNY 465
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE-ITDECLVHLKGLTNLESLN 282
L +L L + L+D G + ++ SL LNL N +TD+ L + GLT L SLN
Sbjct: 466 LKKFKNLRSLEICGGVLTDAGVKNIKELSSLVCLNLSQNSNLTDKTLELISGLTGLVSLN 525
Query: 283 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 323
+ + I + GL +L L NL+ L L +V ++ ++ L +
Sbjct: 526 VSNSRITNAGLQHLKTLKNLRSLTLESCKVTANDIKKLKSI 566
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 97/197 (49%), Gaps = 27/197 (13%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI-----------------------QISDGG 98
++LS ++V +GL HL S+LQ ++ +F + QI+D G
Sbjct: 379 LELSDTEVGSNGLHHLSGLSSLQKINLSFTMISDSSLRKLSGLSSLKSLNLDAYQITDAG 438
Query: 99 LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158
L +L L+ LT L IT G NL L++ G+ N+K L L
Sbjct: 439 LANLTSLTGLTDLDLF-GARITDFGTNYLKKFKNLRSLEICGGVLTDAGVKNIKELSSLV 497
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
LN+ + +TD ++ +SGLT L SL +S S++T++G+ +LK L+ L L LE C VTA
Sbjct: 498 CLNLSQNSNLTDKTLELISGLTGLVSLNVSNSRITNAGLQHLKTLKNLRSLTLESCKVTA 557
Query: 219 ACLDSLSALGSLFYLNL 235
+ + L S++ NL
Sbjct: 558 ---NDIKKLKSIYLPNL 571
>gi|388500850|gb|AFK38491.1| unknown [Medicago truncatula]
Length = 577
Score = 558 bits (1437), Expect = e-156, Method: Compositional matrix adjust.
Identities = 294/396 (74%), Positives = 331/396 (83%), Gaps = 1/396 (0%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
MLPRDISQQI N LVYSR LT SLEAFRDCALQDL LG+Y GV+D WMDVI+SQGSSLL
Sbjct: 75 MLPRDISQQILNNLVYSRRLTGDSLEAFRDCALQDLYLGEYAGVDDSWMDVISSQGSSLL 134
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVDLS SDVTD GL +L+DC +L SL+ N+C QISD GLE + GLSNLTSLSFRRN++I+
Sbjct: 135 SVDLSASDVTDFGLTYLQDCRSLISLNLNYCDQISDHGLECISGLSNLTSLSFRRNDSIS 194
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
AQGM AF+ L+NLVKLDLERC IHGG V+L+GL KLESLN+KWCNCITDSD+KPLS L
Sbjct: 195 AQGMSAFSRLVNLVKLDLERCPGIHGGTVHLQGLTKLESLNMKWCNCITDSDIKPLSELA 254
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
+L SL+ISCSKVTD GI++L+GLQKL LLNLEGC VT+ACLDSLS L +L LNLNRC +
Sbjct: 255 SLTSLEISCSKVTDFGISFLRGLQKLALLNLEGCLVTSACLDSLSELPALSNLNLNRCNI 314
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
S GCE+FS++ LKVLNLGFN+I D CL H+KGLT LESLNLDSC IGDEGL NL G
Sbjct: 315 SGRGCERFSRLEKLKVLNLGFNDIGDRCLAHMKGLTKLESLNLDSCKIGDEGLENLAGHK 374
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
L CLELSDT+VG+ GL HLSGL++LE INLSFT +SD LRKL GLSSLKSLNLDA QI
Sbjct: 375 QLICLELSDTEVGNHGLEHLSGLSSLEKINLSFTVVSDSGLRKLCGLSSLKSLNLDAYQI 434
Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRSKF 396
TD GLA LTSLTGLT LDLFGARITD G YL+ KF
Sbjct: 435 TDAGLATLTSLTGLTDLDLFGARITDVGTNYLK-KF 469
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 105/345 (30%), Positives = 167/345 (48%), Gaps = 47/345 (13%)
Query: 38 LGQYPGVNDKWMDVIA-------SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNF 90
L + +N KW + I S+ +SL S+++S S VTD G+ L+ L L+
Sbjct: 228 LTKLESLNMKWCNCITDSDIKPLSELASLTSLEISCSKVTDFGISFLRGLQKLALLNLEG 287
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL------ERCTRI 144
C+ ++ L+ L L L++L+ R N I+ +G + F+ L L L+L +RC
Sbjct: 288 CL-VTSACLDSLSELPALSNLNLNRCN-ISGRGCERFSRLEKLKVLNLGFNDIGDRC--- 342
Query: 145 HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQ 204
L ++KGL KLESLN+ C I D ++ L+G L L++S ++V + G+ +L GL
Sbjct: 343 ---LAHMKGLTKLESLNLDSCK-IGDEGLENLAGHKQLICLELSDTEVGNHGLEHLSGLS 398
Query: 205 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 264
L +NL V+ + L L L SL LNL+ Q++D G + + L L+L I
Sbjct: 399 SLEKINLSFTVVSDSGLRKLCGLSSLKSLNLDAYQITDAGLATLTSLTGLTDLDLFGARI 458
Query: 265 TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS---------------- 308
TD +LK NL L + S G+ D G+ N+ L +L CL LS
Sbjct: 459 TDVGTNYLKKFKNLRPLEICSGGLTDAGVKNIKELSSLMCLNLSQNSNLTDKTVELIAGL 518
Query: 309 ---------DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 344
+T++ +GL+HL L NL + L ++ ++K
Sbjct: 519 TALVSLNLSNTRITFAGLQHLKTLKNLRFLTLESCKVTVNDIKKF 563
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 67/210 (31%), Positives = 107/210 (50%), Gaps = 7/210 (3%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR 103
+ D+ ++ +A L+ ++LS ++V + GL HL S+L+ ++ +F + +SD GL L
Sbjct: 362 IGDEGLENLAGH-KQLICLELSDTEVGNHGLEHLSGLSSLEKINLSFTV-VSDSGLRKLC 419
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 163
GLS+L SL+ IT G+ L L LDL G LK L L I
Sbjct: 420 GLSSLKSLNLDAYQ-ITDAGLATLTSLTGLTDLDLFGARITDVGTNYLKKFKNLRPLEI- 477
Query: 164 WCNC-ITDSDMKPLSGLTNLKSLQISC-SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 221
C+ +TD+ +K + L++L L +S S +TD + + GL L LNL +T A L
Sbjct: 478 -CSGGLTDAGVKNIKELSSLMCLNLSQNSNLTDKTVELIAGLTALVSLNLSNTRITFAGL 536
Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSKI 251
L L +L +L L C+++ + +KF I
Sbjct: 537 QHLKTLKNLRFLTLESCKVTVNDIKKFKLI 566
>gi|357458869|ref|XP_003599715.1| F-box/LRR-repeat protein [Medicago truncatula]
gi|355488763|gb|AES69966.1| F-box/LRR-repeat protein [Medicago truncatula]
Length = 585
Score = 554 bits (1427), Expect = e-155, Method: Compositional matrix adjust.
Identities = 295/404 (73%), Positives = 332/404 (82%), Gaps = 9/404 (2%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
MLPRDISQQI N LVYSR LT SLEAFRDCALQDL LG+Y GV+D WMDVI+SQGSSLL
Sbjct: 75 MLPRDISQQILNNLVYSRRLTGDSLEAFRDCALQDLYLGEYAGVDDSWMDVISSQGSSLL 134
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVDLS SDVTD GL +L+DC +L SL+ N+C QISD GLE + GLSNLTSLSFRRN++I+
Sbjct: 135 SVDLSASDVTDFGLTYLQDCRSLISLNLNYCDQISDHGLECISGLSNLTSLSFRRNDSIS 194
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
AQGM AF+ L+NLVKLDLERC IHGG V+L+GL KLESLN+KWCNCITDSD+KPLS L
Sbjct: 195 AQGMSAFSRLVNLVKLDLERCPGIHGGTVHLQGLTKLESLNMKWCNCITDSDIKPLSELA 254
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA--------LGSLFY 232
+L SL+ISCSKVTD GI++L+GLQKL LLNLEGC VT+ACLDSLS L +L
Sbjct: 255 SLTSLEISCSKVTDFGISFLRGLQKLALLNLEGCLVTSACLDSLSGCHEHTIPKLPALSN 314
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
LNLNRC +SD GCE+FS++ LKVLNLGFN+I D CL H+KGLT LESLNLDSC IGDEG
Sbjct: 315 LNLNRCNISDRGCERFSRLEKLKVLNLGFNDIGDRCLAHMKGLTKLESLNLDSCKIGDEG 374
Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
L NL G L CLELSDT+VG+ GL HLSGL++LE INLSFT +SD LRKL GLSSLKS
Sbjct: 375 LENLAGHKQLICLELSDTEVGNHGLEHLSGLSSLEKINLSFTVVSDSGLRKLCGLSSLKS 434
Query: 353 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRSKF 396
LNLDA QITD GLA LTSLTGLT LDLFGARITD G YL+ KF
Sbjct: 435 LNLDAYQITDAGLATLTSLTGLTDLDLFGARITDVGTNYLK-KF 477
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 110/352 (31%), Positives = 170/352 (48%), Gaps = 53/352 (15%)
Query: 38 LGQYPGVNDKWMDVIA-------SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNF 90
L + +N KW + I S+ +SL S+++S S VTD G+ L+ L L+
Sbjct: 228 LTKLESLNMKWCNCITDSDIKPLSELASLTSLEISCSKVTDFGISFLRGLQKLALLNLEG 287
Query: 91 CIQIS------DGGLEH-LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL----- 138
C+ S G EH + L L++L+ R N I+ +G + F+ L L L+L
Sbjct: 288 CLVTSACLDSLSGCHEHTIPKLPALSNLNLNRCN-ISDRGCERFSRLEKLKVLNLGFNDI 346
Query: 139 -ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGI 197
+RC L ++KGL KLESLN+ C I D ++ L+G L L++S ++V + G+
Sbjct: 347 GDRC------LAHMKGLTKLESLNLDSCK-IGDEGLENLAGHKQLICLELSDTEVGNHGL 399
Query: 198 AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 257
+L GL L +NL V+ + L L L SL LNL+ Q++D G + + L L
Sbjct: 400 EHLSGLSSLEKINLSFTVVSDSGLRKLCGLSSLKSLNLDAYQITDAGLATLTSLTGLTDL 459
Query: 258 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS--------- 308
+L ITD +LK NL SL + S G+ D G+ N+ L +L CL LS
Sbjct: 460 DLFGARITDVGTNYLKKFKNLRSLEICSGGLTDAGVKNIKELSSLMCLNLSQNSNLTDKT 519
Query: 309 ----------------DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 344
+T++ S+GL+HL L NL S+ L ++ ++K
Sbjct: 520 VELIAGLTALVSLNLSNTRITSAGLQHLKTLKNLRSLTLESCKVTANDIKKF 571
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 68/210 (32%), Positives = 108/210 (51%), Gaps = 7/210 (3%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR 103
+ D+ ++ +A L+ ++LS ++V + GL HL S+L+ ++ +F + +SD GL L
Sbjct: 370 IGDEGLENLAGH-KQLICLELSDTEVGNHGLEHLSGLSSLEKINLSFTV-VSDSGLRKLC 427
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 163
GLS+L SL+ IT G+ L L LDL G LK L SL I
Sbjct: 428 GLSSLKSLNLDAYQ-ITDAGLATLTSLTGLTDLDLFGARITDVGTNYLKKFKNLRSLEI- 485
Query: 164 WCNC-ITDSDMKPLSGLTNLKSLQISC-SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 221
C+ +TD+ +K + L++L L +S S +TD + + GL L LNL +T+A L
Sbjct: 486 -CSGGLTDAGVKNIKELSSLMCLNLSQNSNLTDKTVELIAGLTALVSLNLSNTRITSAGL 544
Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSKI 251
L L +L L L C+++ + +KF I
Sbjct: 545 QHLKTLKNLRSLTLESCKVTANDIKKFKLI 574
>gi|224120462|ref|XP_002331054.1| predicted protein [Populus trichocarpa]
gi|222872984|gb|EEF10115.1| predicted protein [Populus trichocarpa]
Length = 576
Score = 553 bits (1426), Expect = e-155, Method: Compositional matrix adjust.
Identities = 283/393 (72%), Positives = 333/393 (84%), Gaps = 1/393 (0%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
MLPRD+SQQIFNELV S LT SLEAFRDCALQD+ LG+YPGV D WMDVI+SQGSSLL
Sbjct: 75 MLPRDLSQQIFNELVISHSLTAASLEAFRDCALQDVLLGEYPGVMDSWMDVISSQGSSLL 134
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVDLS SDVTD+GL LKDCSNLQ++ N+C ISD GL+HL GL+N+TSLS +++ ++T
Sbjct: 135 SVDLSDSDVTDAGLGLLKDCSNLQAIALNYCNNISDNGLKHLSGLTNITSLSLKKSCSVT 194
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
A+GM+AF+ L+NL LD+ERC+ IHGGLV+LKGL KLESLNI+ C CITD DMK +SGLT
Sbjct: 195 AEGMRAFSTLLNLENLDMERCSGIHGGLVHLKGLKKLESLNIRCCKCITDMDMKAISGLT 254
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
NLK LQIS + VTD G++YL+GLQKL +LNLEGC +T ACLDS+SAL +L YLNLNRC L
Sbjct: 255 NLKELQISNTNVTDVGVSYLRGLQKLIMLNLEGCNITTACLDSISALATLAYLNLNRCHL 314
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
DDGC+KFS + +LKVL+L FN++TD CLVHLKGL NLESLNLDSC IGDEG+ NL GL
Sbjct: 315 PDDGCDKFSGLKNLKVLSLAFNDVTDACLVHLKGLKNLESLNLDSCRIGDEGIANLAGL- 373
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
LK LELSDT VGSSGLRHLSG+ +LE++NLSFT ++DG LRKL+GL+SL+SLNLDARQI
Sbjct: 374 PLKSLELSDTIVGSSGLRHLSGIPHLENLNLSFTLVTDGGLRKLSGLTSLRSLNLDARQI 433
Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
TD GL ALTSLTGLT LDLFGARITDSG L+
Sbjct: 434 TDAGLTALTSLTGLTRLDLFGARITDSGTNCLK 466
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 104/315 (33%), Positives = 163/315 (51%), Gaps = 12/315 (3%)
Query: 20 LTEVSLEAFRDCALQDLCLGQYPGVN--DKWMDVIASQGSSLLSVDLSGSDVTDSGLIHL 77
+T+V + R LQ L + G N +D I++ ++L ++L+ + D G
Sbjct: 266 VTDVGVSYLR--GLQKLIMLNLEGCNITTACLDSISAL-ATLAYLNLNRCHLPDDGCDKF 322
Query: 78 KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLD 137
NL+ L F ++D L HL+GL NL SL+ + I +G+ AGL L L+
Sbjct: 323 SGLKNLKVLSLAFN-DVTDACLVHLKGLKNLESLNLD-SCRIGDEGIANLAGL-PLKSLE 379
Query: 138 LERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGI 197
L GL +L G+ LE+LN+ + +TD ++ LSGLT+L+SL + ++TD+G+
Sbjct: 380 LSDTIVGSSGLRHLSGIPHLENLNLSF-TLVTDGGLRKLSGLTSLRSLNLDARQITDAGL 438
Query: 198 AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 257
L L LT L+L G +T + + L +L L + L+D G + + L VL
Sbjct: 439 TALTSLTGLTRLDLFGARITDSGTNCLKYFKNLKSLEICGGGLTDAGVKNIKDLVHLTVL 498
Query: 258 NLGFN-EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 316
NL N +TD+ L + GLT L SLN+ + I +EGL L L NL+ L L +V +S
Sbjct: 499 NLSQNTNLTDKTLELISGLTELVSLNVSNSLITNEGLRYLKPLKNLRALTLESCKVTASE 558
Query: 317 LRHL--SGLTNLESI 329
++ L + L NL S+
Sbjct: 559 IKKLQSTELPNLASV 573
>gi|182407840|gb|ACB87911.1| F-box-containing protein 1 [Malus x domestica]
Length = 580
Score = 545 bits (1405), Expect = e-152, Method: Compositional matrix adjust.
Identities = 285/393 (72%), Positives = 344/393 (87%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
MLPRD+SQQIFNELV S LT+VSLEAFRDCAL+D+ LG+YP V D WM VI+SQGSSLL
Sbjct: 78 MLPRDVSQQIFNELVCSNSLTDVSLEAFRDCALEDIGLGEYPDVKDSWMGVISSQGSSLL 137
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVDLSGS+VTDSGL LK CSNLQ+L +N+C +S+ GL+H+ GLSNLTSLSF+R++AI+
Sbjct: 138 SVDLSGSEVTDSGLALLKGCSNLQALAYNYCDHVSEQGLKHISGLSNLTSLSFKRSDAIS 197
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
A+GM+AF+GL+NL KLDLERC+ IHGG V+LKGL KL+SLN++ C CITDSD+K +SGL
Sbjct: 198 AEGMRAFSGLLNLEKLDLERCSAIHGGFVHLKGLKKLKSLNVRCCRCITDSDLKTISGLI 257
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
+L LQ+S +TDSGI+YLKGL KL +LNLEGC VTA+CL S+SAL +L YLNLNRC L
Sbjct: 258 DLNELQLSNCNITDSGISYLKGLHKLRMLNLEGCNVTASCLQSISALVALAYLNLNRCSL 317
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
SD+GC+KFS + +LKVL+LGFNEITD CL++LKGLT+LESLNLDSC IGDEGL NL GL
Sbjct: 318 SDEGCDKFSGLTNLKVLSLGFNEITDACLMYLKGLTSLESLNLDSCKIGDEGLANLAGLT 377
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
+LK LELSDT+VGS+GLRHLSGL NLES+NLSFT ++D SL++L+GL+SLKSLNLDARQI
Sbjct: 378 HLKNLELSDTEVGSNGLRHLSGLKNLESLNLSFTLVTDSSLKRLSGLTSLKSLNLDARQI 437
Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
TD GLAA+TSLTGLTHLDLFGARI+DSGA +L+
Sbjct: 438 TDAGLAAITSLTGLTHLDLFGARISDSGANHLK 470
Score = 100 bits (250), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 76/222 (34%), Positives = 129/222 (58%), Gaps = 4/222 (1%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
++TD+ L++LK ++L+SL+ + C +I D GL +L GL++L +L + + + G++
Sbjct: 340 EITDACLMYLKGLTSLESLNLDSC-KIGDEGLANLAGLTHLKNLELS-DTEVGSNGLRHL 397
Query: 128 AGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
+GL NL L+L L L GL L+SLN+ ITD+ + ++ LT L L +
Sbjct: 398 SGLKNLESLNLSFTLVTDSSLKRLSGLTSLKSLNLD-ARQITDAGLAAITSLTGLTHLDL 456
Query: 188 SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR-CQLSDDGCE 246
++++DSG +LK + L L + G +T A + ++ L L +LN+++ C L++ E
Sbjct: 457 FGARISDSGANHLKYFKNLQSLEICGGGLTDAGVKNIKDLVCLTWLNISQNCNLTNKSLE 516
Query: 247 KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 288
S + +L LN+ + IT+E L HLK L NL SL L+SC +
Sbjct: 517 LISGLTALVSLNVSNSRITNEGLQHLKPLKNLRSLTLESCKV 558
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 75/238 (31%), Positives = 113/238 (47%), Gaps = 43/238 (18%)
Query: 11 FNE-----LVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLS 65
FNE L+Y + LT + C + D L G+ + L +++LS
Sbjct: 338 FNEITDACLMYLKGLTSLESLNLDSCKIGDEGLANLAGL------------THLKNLELS 385
Query: 66 GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMK 125
++V +GL HL NL+SL+ +F + ++D L+ L GL++L SL+ IT G+
Sbjct: 386 DTEVGSNGLRHLSGLKNLESLNLSFTL-VTDSSLKRLSGLTSLKSLNLDARQ-ITDAGLA 443
Query: 126 AFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL-------------NIK------WCN 166
A L L LDL G +LK L+SL NIK W N
Sbjct: 444 AITSLTGLTHLDLFGARISDSGANHLKYFKNLQSLEICGGGLTDAGVKNIKDLVCLTWLN 503
Query: 167 C-----ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
+T+ ++ +SGLT L SL +S S++T+ G+ +LK L+ L L LE C VTA+
Sbjct: 504 ISQNCNLTNKSLELISGLTALVSLNVSNSRITNEGLQHLKPLKNLRSLTLESCKVTAS 561
>gi|357468127|ref|XP_003604348.1| F-box/LRR-repeat protein [Medicago truncatula]
gi|355505403|gb|AES86545.1| F-box/LRR-repeat protein [Medicago truncatula]
Length = 573
Score = 543 bits (1399), Expect = e-152, Method: Compositional matrix adjust.
Identities = 290/398 (72%), Positives = 326/398 (81%), Gaps = 9/398 (2%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
MLPRDISQQI N LVYSR LT SLEAFRDCALQDL LG+Y GV+D WMDVI+SQGSSLL
Sbjct: 75 MLPRDISQQILNNLVYSRRLTGDSLEAFRDCALQDLYLGEYAGVDDSWMDVISSQGSSLL 134
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC--IQISDGGLEHLRGLSNLTSLSFRRNNA 118
SVDLS SDVTD GL +L+DC +L SL+ N+C QI D L SNLTSLSFRRN++
Sbjct: 135 SVDLSASDVTDFGLTYLQDCRSLISLNLNYCDKFQIMDWSL------SNLTSLSFRRNDS 188
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
I+AQGM AF+ L+NLVKLDLERC IHGG V+L+GL KLESLN+KWCNCITDSD+KPLS
Sbjct: 189 ISAQGMSAFSRLVNLVKLDLERCPGIHGGTVHLQGLTKLESLNMKWCNCITDSDIKPLSE 248
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
L +L SL+ISCSKVTD GI++L+GLQKL LLNLEGC VT+ACLDSLS L +L LNLNRC
Sbjct: 249 LASLTSLEISCSKVTDFGISFLRGLQKLALLNLEGCLVTSACLDSLSELPALSNLNLNRC 308
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
+SD GCE+FS++ LKVLNLGFN+I D CL H+KGLT LESLNLDSC IGDEGL NL G
Sbjct: 309 NISDRGCERFSRLEKLKVLNLGFNDIGDRCLAHMKGLTKLESLNLDSCKIGDEGLENLAG 368
Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
L CLELSDT+VG+ GL HLSGL++LE INLSFT +SD LRKL GLSSLKSLNLDA
Sbjct: 369 HKQLICLELSDTEVGNHGLEHLSGLSSLEKINLSFTVVSDSGLRKLCGLSSLKSLNLDAY 428
Query: 359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRSKF 396
QITD GLA LTSLTGLT LDLFGARITD G YL+ KF
Sbjct: 429 QITDAGLATLTSLTGLTDLDLFGARITDVGTNYLK-KF 465
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 68/210 (32%), Positives = 108/210 (51%), Gaps = 7/210 (3%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR 103
+ D+ ++ +A L+ ++LS ++V + GL HL S+L+ ++ +F + +SD GL L
Sbjct: 358 IGDEGLENLAGH-KQLICLELSDTEVGNHGLEHLSGLSSLEKINLSFTV-VSDSGLRKLC 415
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 163
GLS+L SL+ IT G+ L L LDL G LK L SL I
Sbjct: 416 GLSSLKSLNLDAYQ-ITDAGLATLTSLTGLTDLDLFGARITDVGTNYLKKFKNLRSLEI- 473
Query: 164 WCNC-ITDSDMKPLSGLTNLKSLQISC-SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 221
C+ +TD+ +K + L++L L +S S +TD + + GL L LNL +T+A L
Sbjct: 474 -CSGGLTDAGVKNIKELSSLMCLNLSQNSNLTDKTVELIAGLTALVSLNLSNTRITSAGL 532
Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSKI 251
L L +L L L C+++ + +KF I
Sbjct: 533 QHLKTLKNLRSLTLESCKVTANDIKKFKLI 562
>gi|255583092|ref|XP_002532313.1| protein binding protein, putative [Ricinus communis]
gi|223527982|gb|EEF30065.1| protein binding protein, putative [Ricinus communis]
Length = 597
Score = 532 bits (1371), Expect = e-149, Method: Compositional matrix adjust.
Identities = 285/393 (72%), Positives = 332/393 (84%), Gaps = 1/393 (0%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
MLPRD+SQQIFNELV S CLT+ +LEAFRDCALQD+ LG+YPGV D WMD+++SQGSSLL
Sbjct: 75 MLPRDLSQQIFNELVISHCLTDATLEAFRDCALQDILLGEYPGVKDSWMDIVSSQGSSLL 134
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVDLS SDVTD+GL L+ CS+LQ++ N C IS+ GL+H+ GL NLTSLSF+R NA+T
Sbjct: 135 SVDLSDSDVTDTGLALLQACSSLQTMILNRCDCISECGLKHISGLKNLTSLSFKRCNAVT 194
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
A+GM+ F+ L+NL KLDLERC +IHGGL +LKGL+KLESLNI+ C CI D DMK LS +T
Sbjct: 195 AEGMRGFSSLVNLEKLDLERCPQIHGGLAHLKGLLKLESLNIRCCKCIEDMDMKALSDIT 254
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
NLK LQIS S VTD G++YLKGLQKL +LNLEGC VT ACLDS+SAL +L YLNLNRC L
Sbjct: 255 NLKELQISNSNVTDLGVSYLKGLQKLIMLNLEGCNVTTACLDSISALVALTYLNLNRCNL 314
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
SDDGC KFS + +LKVL+LGFN ITD CLVHLKGL NLE+LNLDSC IGDEGL NLTGL
Sbjct: 315 SDDGCSKFSGLKNLKVLSLGFNNITDACLVHLKGLMNLENLNLDSCNIGDEGLANLTGL- 373
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
LK LELSDT+VGS+GLRHLSGLT LE++NLSFT ++D LR+L+GL SL+SLNLDARQI
Sbjct: 374 PLKSLELSDTEVGSNGLRHLSGLTLLENLNLSFTLVTDSGLRRLSGLLSLRSLNLDARQI 433
Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
TD GLAALT LTGL HLDLFGARI+DSG YL+
Sbjct: 434 TDAGLAALTRLTGLIHLDLFGARISDSGTKYLQ 466
Score = 117 bits (294), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 121/342 (35%), Positives = 190/342 (55%), Gaps = 8/342 (2%)
Query: 49 MDVIA-SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSN 107
MD+ A S ++L + +S S+VTD G+ +LK L L+ C ++ L+ + L
Sbjct: 245 MDMKALSDITNLKELQISNSNVTDLGVSYLKGLQKLIMLNLEGC-NVTTACLDSISALVA 303
Query: 108 LTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNC 167
LT L+ R N ++ G F+GL NL L L LV+LKGLM LE+LN+ CN
Sbjct: 304 LTYLNLNRCN-LSDDGCSKFSGLKNLKVLSLGFNNITDACLVHLKGLMNLENLNLDSCN- 361
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
I D + L+GL LKSL++S ++V +G+ +L GL L LNL VT + L LS L
Sbjct: 362 IGDEGLANLTGLP-LKSLELSDTEVGSNGLRHLSGLTLLENLNLSFTLVTDSGLRRLSGL 420
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
SL LNL+ Q++D G +++ L L+L I+D +L+ NL+SL + G
Sbjct: 421 LSLRSLNLDARQITDAGLAALTRLTGLIHLDLFGARISDSGTKYLQYFKNLQSLEICGGG 480
Query: 288 IGDEGLVNLTGLCNLKCLELS-DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG 346
+ D+G+ N+ L +L L LS ++ + L +SGLT L S+N+S + I++ L L
Sbjct: 481 LTDDGVKNIKDLVHLTVLNLSQNSNLTDKTLELISGLTELVSLNVSNSLITNEGLHYLKP 540
Query: 347 LSSLKSLNLDARQITDTGLAAL--TSLTGLTHLDLFGARITD 386
L +L+SL+L++ ++T + ++ L T+L L D+ G + D
Sbjct: 541 LKNLRSLSLESCKVTASEISKLQSTALPNLKGRDMLGTGVRD 582
>gi|357164542|ref|XP_003580088.1| PREDICTED: insulin-like growth factor-binding protein complex acid
labile subunit-like [Brachypodium distachyon]
Length = 580
Score = 530 bits (1365), Expect = e-148, Method: Compositional matrix adjust.
Identities = 279/393 (70%), Positives = 325/393 (82%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
MLPRD+SQQIFNELV LTE SLEAFRDCALQD+CL +YPGV D WM+V+ASQG SLL
Sbjct: 78 MLPRDLSQQIFNELVEWSYLTEESLEAFRDCALQDICLEEYPGVKDAWMEVVASQGQSLL 137
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVD+S SDVTDSGL LKDCSN+QSL N+C QIS+ GL+ L GLSNLTSLS ++ A+T
Sbjct: 138 SVDISCSDVTDSGLDVLKDCSNMQSLACNYCDQISEHGLKTLSGLSNLTSLSLKKCAAVT 197
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
A+G KAFA L+NLV LDLERC +IHGGLV+LKGL KLE+LN+++CNCITDSDMK LS LT
Sbjct: 198 AEGAKAFADLVNLVNLDLERCPKIHGGLVHLKGLRKLETLNMRYCNCITDSDMKYLSDLT 257
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
NL+ LQ+SC K++D G++YLKGL KL LNLEGC VTAACL+++S L SL LNLNRC +
Sbjct: 258 NLRELQLSCCKISDIGVSYLKGLSKLAHLNLEGCAVTAACLEAISGLASLILLNLNRCGI 317
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
D+GCE + LKVLNLGFN ITD CLVHLK L +LE LNLDSC IGDEGL++L GL
Sbjct: 318 YDEGCENLEGLVKLKVLNLGFNHITDACLVHLKELVSLECLNLDSCKIGDEGLLHLKGLL 377
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
L+ LELSDT+VGS+GLRHLSGL NL+S+NLSFT ++D L+K+AGL+SLKSLNLD RQI
Sbjct: 378 QLRSLELSDTEVGSNGLRHLSGLRNLQSMNLSFTLVTDIGLKKVAGLNSLKSLNLDNRQI 437
Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
TD GLAAL LTGLTHLDLFGARITDSG LR
Sbjct: 438 TDNGLAALAGLTGLTHLDLFGARITDSGTNCLR 470
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 118/320 (36%), Positives = 182/320 (56%), Gaps = 4/320 (1%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TDS + +L D +NL+ L + C +ISD G+ +L+GLS L L+ A+TA ++A +
Sbjct: 245 ITDSDMKYLSDLTNLRELQLS-CCKISDIGVSYLKGLSKLAHLNLE-GCAVTAACLEAIS 302
Query: 129 GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
GL +L+ L+L RC G NL+GL+KL+ LN+ + N ITD+ + L L +L+ L +
Sbjct: 303 GLASLILLNLNRCGIYDEGCENLEGLVKLKVLNLGF-NHITDACLVHLKELVSLECLNLD 361
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 248
K+ D G+ +LKGL +L L L V + L LS L +L +NL+ ++D G +K
Sbjct: 362 SCKIGDEGLLHLKGLLQLRSLELSDTEVGSNGLRHLSGLRNLQSMNLSFTLVTDIGLKKV 421
Query: 249 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 308
+ + SLK LNL +ITD L L GLT L L+L I D G L L+ LEL
Sbjct: 422 AGLNSLKSLNLDNRQITDNGLAALAGLTGLTHLDLFGARITDSGTNCLRYFKELQSLELC 481
Query: 309 DTQVGSSGLRHLSGLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 367
+ +G++++ L L +NLS G ++D +L ++GL++L SLNL ++++ GL
Sbjct: 482 GGLITDAGVKNIKDLKALTLLNLSQNGNLTDRTLELISGLTALVSLNLSNTRVSNAGLHH 541
Query: 368 LTSLTGLTHLDLFGARITDS 387
L L L L L ++T S
Sbjct: 542 LKLLQNLRSLSLDSCKVTAS 561
>gi|356550632|ref|XP_003543689.1| PREDICTED: F-box/LRR-repeat protein 14-like [Glycine max]
Length = 565
Score = 527 bits (1357), Expect = e-147, Method: Compositional matrix adjust.
Identities = 278/402 (69%), Positives = 320/402 (79%), Gaps = 10/402 (2%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPG----------VNDKWMDV 51
LP D+SQ+IFN +VYS LT SL+ FRD ALQD+CLG+Y V+D WMDV
Sbjct: 54 LPPDLSQRIFNNMVYSSYLTPASLQPFRDSALQDICLGEYEYANGGGAAAAIVDDAWMDV 113
Query: 52 IASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSL 111
I+SQGSSLL +DLS SDVTD GL L C+N+ SL+ N C QISD GLE + GLSNL SL
Sbjct: 114 ISSQGSSLLHLDLSASDVTDHGLTFLGHCTNIISLNLNHCHQISDHGLECISGLSNLASL 173
Query: 112 SFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDS 171
SFRRN AI+AQG+ F+GLINLVKLDLERC IHG LV+++GL LESLN+ WCNC+ D
Sbjct: 174 SFRRNYAISAQGLNTFSGLINLVKLDLERCPGIHGSLVHIQGLTMLESLNLNWCNCLVDV 233
Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
DMKPLS LTNLKSL+IS +KVTD GI++LKGLQKL LLNLEGC VT ACLDSL L +L
Sbjct: 234 DMKPLSVLTNLKSLEISFNKVTDFGISFLKGLQKLNLLNLEGCQVTTACLDSLEELPALS 293
Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
LNL+RC LS+DGCEKFS++ +LKVLNLGFN+ITD CL HLKGLT L+SLNLDSC I DE
Sbjct: 294 NLNLSRCNLSNDGCEKFSRLENLKVLNLGFNDITDACLAHLKGLTKLKSLNLDSCRIEDE 353
Query: 292 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 351
GLV+L G L CLELSDT +GS+GL HLSGL+NLE INLSFT ++D L KL GLSSLK
Sbjct: 354 GLVHLAGHQQLNCLELSDTGIGSNGLHHLSGLSNLEKINLSFTFVNDSGLSKLCGLSSLK 413
Query: 352 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
SLNLDARQ+TDTGLA+LTSLTGLT LDLFGARITD G YL+
Sbjct: 414 SLNLDARQVTDTGLASLTSLTGLTELDLFGARITDFGTNYLK 455
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 91/182 (50%), Gaps = 28/182 (15%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
++LS + + +GL HL SNL+ ++ +F ++D GL L GLS+L SL+ +T
Sbjct: 367 LELSDTGIGSNGLHHLSGLSNLEKINLSFTF-VNDSGLSKLCGLSSLKSLNLDARQ-VTD 424
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI------------------- 162
G+ + L L +LDL G LK L L I
Sbjct: 425 TGLASLTSLTGLTELDLFGARITDFGTNYLKCFKNLRLLEICGGELTDDGVKNIKELSSL 484
Query: 163 ------KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
+ CN +TD+ ++ +SGLT+L SL +S S +T++G+ +LK L+ L L+LE C V
Sbjct: 485 KSLNLSQNCN-LTDTTLELISGLTDLISLNVSNSGITNAGLQHLKTLKNLRSLSLESCKV 543
Query: 217 TA 218
TA
Sbjct: 544 TA 545
>gi|115459280|ref|NP_001053240.1| Os04g0503500 [Oryza sativa Japonica Group]
gi|113564811|dbj|BAF15154.1| Os04g0503500 [Oryza sativa Japonica Group]
gi|215678755|dbj|BAG95192.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215708842|dbj|BAG94111.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222629150|gb|EEE61282.1| hypothetical protein OsJ_15365 [Oryza sativa Japonica Group]
Length = 581
Score = 518 bits (1333), Expect = e-144, Method: Compositional matrix adjust.
Identities = 268/393 (68%), Positives = 317/393 (80%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
+LPRD+SQQ+FNELV LTE L AFRDCALQD+CL YPGV D WM+V ASQG SLL
Sbjct: 79 LLPRDLSQQVFNELVEWNILTEELLGAFRDCALQDICLADYPGVRDAWMEVAASQGQSLL 138
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVD+S SDVTD GL LKDC NLQSL N+C QIS+ GL+ L GLSN+TSLSF++ +A+T
Sbjct: 139 SVDISCSDVTDGGLNQLKDCINLQSLSCNYCDQISEHGLKTLSGLSNVTSLSFKKCSAVT 198
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
A+G KAFA ++NL LDLERC +IHGGLV+LKGL KLE LN+++CN ITDSDMK LS LT
Sbjct: 199 AEGAKAFANMVNLGSLDLERCPKIHGGLVHLKGLRKLEKLNLRYCNGITDSDMKHLSDLT 258
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
NL+ LQ+SC K++D G++YL+GL KL LNLEGC VTAACL+ +S L SL LNL+RC +
Sbjct: 259 NLRELQLSCCKISDLGVSYLRGLSKLAHLNLEGCAVTAACLEVISGLASLVLLNLSRCGV 318
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
D+GCE + LKVLNLGFN ITD CLVHLK L NLE LNLDSC IGDEGL +L GL
Sbjct: 319 YDEGCEHLEGLVKLKVLNLGFNYITDACLVHLKELINLECLNLDSCKIGDEGLAHLKGLL 378
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
L+ LELSDT+VGS+GLRHLSGL NL+SINLSFT ++D L+K++GL+SL+SLNLD RQI
Sbjct: 379 KLRSLELSDTEVGSNGLRHLSGLRNLQSINLSFTLVTDIGLKKISGLNSLRSLNLDNRQI 438
Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
TD GLAALT LTGLTHLDLFGARITD+G L+
Sbjct: 439 TDNGLAALTCLTGLTHLDLFGARITDAGTNCLK 471
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 119/318 (37%), Positives = 181/318 (56%), Gaps = 4/318 (1%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TDS + HL D +NL+ L + C +ISD G+ +LRGLS L L+ A+TA ++ +
Sbjct: 246 ITDSDMKHLSDLTNLRELQLS-CCKISDLGVSYLRGLSKLAHLNLE-GCAVTAACLEVIS 303
Query: 129 GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
GL +LV L+L RC G +L+GL+KL+ LN+ + N ITD+ + L L NL+ L +
Sbjct: 304 GLASLVLLNLSRCGVYDEGCEHLEGLVKLKVLNLGF-NYITDACLVHLKELINLECLNLD 362
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 248
K+ D G+A+LKGL KL L L V + L LS L +L +NL+ ++D G +K
Sbjct: 363 SCKIGDEGLAHLKGLLKLRSLELSDTEVGSNGLRHLSGLRNLQSINLSFTLVTDIGLKKI 422
Query: 249 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 308
S + SL+ LNL +ITD L L LT L L+L I D G L NL+ LE+
Sbjct: 423 SGLNSLRSLNLDNRQITDNGLAALTCLTGLTHLDLFGARITDAGTNCLKYFKNLQSLEVC 482
Query: 309 DTQVGSSGLRHLSGLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 367
+ +G++++ L L +NLS G ++D SL ++ L++L SLN+ +++++GL
Sbjct: 483 GGLITDAGVKNIKDLKALTLLNLSQNGNLTDKSLELISRLTALVSLNVSNSRVSNSGLHH 542
Query: 368 LTSLTGLTHLDLFGARIT 385
L L L L L ++T
Sbjct: 543 LKPLQNLRSLSLESCKVT 560
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/184 (36%), Positives = 100/184 (54%), Gaps = 26/184 (14%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L S++LS ++V +GL HL NLQS++ +F + ++D GL+ + GL++L SL+ N
Sbjct: 380 LRSLELSDTEVGSNGLRHLSGLRNLQSINLSFTL-VTDIGLKKISGLNSLRSLNLD-NRQ 437
Query: 119 ITAQGMKAFAGLINLVKLDL--ERCT----------------RIHGGLV------NLKGL 154
IT G+ A L L LDL R T + GGL+ N+K L
Sbjct: 438 ITDNGLAALTCLTGLTHLDLFGARITDAGTNCLKYFKNLQSLEVCGGLITDAGVKNIKDL 497
Query: 155 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 214
L LN+ +TD ++ +S LT L SL +S S+V++SG+ +LK LQ L L+LE C
Sbjct: 498 KALTLLNLSQNGNLTDKSLELISRLTALVSLNVSNSRVSNSGLHHLKPLQNLRSLSLESC 557
Query: 215 PVTA 218
VTA
Sbjct: 558 KVTA 561
Score = 38.1 bits (87), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 46/73 (63%), Gaps = 2/73 (2%)
Query: 20 LTEVSLEAFRDC-ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLK 78
+T+ ++ +D AL L L Q + DK +++I S+ ++L+S+++S S V++SGL HLK
Sbjct: 486 ITDAGVKNIKDLKALTLLNLSQNGNLTDKSLELI-SRLTALVSLNVSNSRVSNSGLHHLK 544
Query: 79 DCSNLQSLDFNFC 91
NL+SL C
Sbjct: 545 PLQNLRSLSLESC 557
>gi|116310796|emb|CAH67587.1| OSIGBa0112M24.4 [Oryza sativa Indica Group]
gi|218195159|gb|EEC77586.1| hypothetical protein OsI_16540 [Oryza sativa Indica Group]
Length = 581
Score = 518 bits (1333), Expect = e-144, Method: Compositional matrix adjust.
Identities = 268/393 (68%), Positives = 317/393 (80%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
+LPRD+SQQ+FNELV LTE L AFRDCALQD+CL YPGV D WM+V ASQG SLL
Sbjct: 79 LLPRDLSQQVFNELVEWNILTEELLGAFRDCALQDICLADYPGVRDAWMEVAASQGQSLL 138
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVD+S SDVTD GL LKDC NLQSL N+C QIS+ GL+ L GLSN+TSLSF++ +A+T
Sbjct: 139 SVDISCSDVTDGGLNQLKDCINLQSLSCNYCDQISEHGLKTLSGLSNVTSLSFKKCSAVT 198
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
A+G KAFA ++NL LDLERC +IHGGLV+LKGL KLE LN+++CN ITDSDMK LS LT
Sbjct: 199 AEGAKAFANMVNLGSLDLERCPKIHGGLVHLKGLRKLEKLNLRYCNGITDSDMKHLSDLT 258
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
NL+ LQ+SC K++D G++YL+GL KL LNLEGC VTAACL+ +S L SL LNL+RC +
Sbjct: 259 NLRELQLSCCKISDLGVSYLRGLSKLAHLNLEGCAVTAACLEVISGLASLVLLNLSRCGV 318
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
D+GCE + LKVLNLGFN ITD CLVHLK L NLE LNLDSC IGDEGL +L GL
Sbjct: 319 YDEGCEHLEGLVKLKVLNLGFNYITDACLVHLKELINLECLNLDSCKIGDEGLAHLKGLL 378
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
L+ LELSDT+VGS+GLRHLSGL NL+SINLSFT ++D L+K++GL+SL+SLNLD RQI
Sbjct: 379 KLRSLELSDTEVGSNGLRHLSGLRNLQSINLSFTLVTDIGLKKISGLNSLRSLNLDNRQI 438
Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
TD GLAALT LTGLTHLDLFGARITD+G L+
Sbjct: 439 TDNGLAALTCLTGLTHLDLFGARITDAGTNCLK 471
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 120/318 (37%), Positives = 182/318 (57%), Gaps = 4/318 (1%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TDS + HL D +NL+ L + C +ISD G+ +LRGLS L L+ A+TA ++ +
Sbjct: 246 ITDSDMKHLSDLTNLRELQLS-CCKISDLGVSYLRGLSKLAHLNLE-GCAVTAACLEVIS 303
Query: 129 GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
GL +LV L+L RC G +L+GL+KL+ LN+ + N ITD+ + L L NL+ L +
Sbjct: 304 GLASLVLLNLSRCGVYDEGCEHLEGLVKLKVLNLGF-NYITDACLVHLKELINLECLNLD 362
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 248
K+ D G+A+LKGL KL L L V + L LS L +L +NL+ ++D G +K
Sbjct: 363 SCKIGDEGLAHLKGLLKLRSLELSDTEVGSNGLRHLSGLRNLQSINLSFTLVTDIGLKKI 422
Query: 249 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 308
S + SL+ LNL +ITD L L LT L L+L I D G L NL+ LE+
Sbjct: 423 SGLNSLRSLNLDNRQITDNGLAALTCLTGLTHLDLFGARITDAGTNCLKYFKNLQSLEVC 482
Query: 309 DTQVGSSGLRHLSGLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 367
+ +G++++ L L +NLS G ++D SL ++GL++L SLN+ +++++GL
Sbjct: 483 GGLITDAGVKNIKDLKALTLLNLSQNGNLTDKSLELISGLTALVSLNVSNSRVSNSGLHH 542
Query: 368 LTSLTGLTHLDLFGARIT 385
L L L L L ++T
Sbjct: 543 LKPLQNLRSLSLESCKVT 560
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/184 (37%), Positives = 101/184 (54%), Gaps = 26/184 (14%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L S++LS ++V +GL HL NLQS++ +F + ++D GL+ + GL++L SL+ N
Sbjct: 380 LRSLELSDTEVGSNGLRHLSGLRNLQSINLSFTL-VTDIGLKKISGLNSLRSLNLD-NRQ 437
Query: 119 ITAQGMKAFAGLINLVKLDL--ERCT----------------RIHGGLV------NLKGL 154
IT G+ A L L LDL R T + GGL+ N+K L
Sbjct: 438 ITDNGLAALTCLTGLTHLDLFGARITDAGTNCLKYFKNLQSLEVCGGLITDAGVKNIKDL 497
Query: 155 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 214
L LN+ +TD ++ +SGLT L SL +S S+V++SG+ +LK LQ L L+LE C
Sbjct: 498 KALTLLNLSQNGNLTDKSLELISGLTALVSLNVSNSRVSNSGLHHLKPLQNLRSLSLESC 557
Query: 215 PVTA 218
VTA
Sbjct: 558 KVTA 561
>gi|8927653|gb|AAF82144.1|AC034256_8 Contains similarity to F-box protein FBL2 from Homo sapiens
gb|AF176518 and contains multiple Leucine Rich PF|00560
repeats. ESTs gb|Z34572, gb|Z34571, gb|AI100681,
gb|AI100675, gb|AA395320, gb|AI100674, gb|AA651378,
gb|AA007067, gb|T46145, gb|T22090, gb|AI995016,
gb|H36884, gb|AI995066, gb|H37061, gb|T43537 come from
this gene [Arabidopsis thaliana]
Length = 568
Score = 514 bits (1325), Expect = e-143, Method: Compositional matrix adjust.
Identities = 275/401 (68%), Positives = 318/401 (79%), Gaps = 32/401 (7%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
LPRDISQQIF+ELVYS+ LT SLEAFRDCA+QDL LG+YPGVND WMDVI+SQ +SLLS
Sbjct: 83 LPRDISQQIFDELVYSQRLTLKSLEAFRDCAIQDLYLGEYPGVNDDWMDVISSQSTSLLS 142
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
VD SGSD+TDSGL+ LK C+NL+SL+FNFC QIS+ GL HL GLSNLTSLSFRRN AITA
Sbjct: 143 VDFSGSDITDSGLVSLKGCTNLESLNFNFCDQISNRGLVHLSGLSNLTSLSFRRNAAITA 202
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
QGM+A + L+NL KLDLE+C I GGLV+L+ L KLESLNIKWCNCITD+DM+PLSGL
Sbjct: 203 QGMRALSNLVNLKKLDLEKCPGIDGGLVHLRALTKLESLNIKWCNCITDADMEPLSGLNK 262
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLS-------ALGSLFYL 233
L L + EGC VTAACLD+L+ AL L YL
Sbjct: 263 LNLLNL------------------------EGCRHVTAACLDTLTGLYRHPHALAGLMYL 298
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
NLNRC SD GCEKFS + +LK+LNLG N IT+ CLVHLKGLT LESLNLDSC IGDEGL
Sbjct: 299 NLNRCNFSDSGCEKFSDLINLKILNLGMNNITNSCLVHLKGLTKLESLNLDSCRIGDEGL 358
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
V+L+G+ LK LELSDT+VGS+GLRHLSGL+NLESINLSFT ++D LRKL+GL+SL++L
Sbjct: 359 VHLSGMLELKSLELSDTEVGSNGLRHLSGLSNLESINLSFTVVTDSGLRKLSGLTSLRTL 418
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRS 394
NLDAR +TD GL+ALTSLTGLTHLDLFGARITDSG +LR+
Sbjct: 419 NLDARHVTDAGLSALTSLTGLTHLDLFGARITDSGTNHLRN 459
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 101/192 (52%), Gaps = 26/192 (13%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L S++LS ++V +GL HL SNL+S++ +F + ++D GL L GL++L +L+ +
Sbjct: 367 LKSLELSDTEVGSNGLRHLSGLSNLESINLSFTV-VTDSGLRKLSGLTSLRTLNLDARH- 424
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL-------------NIK-- 163
+T G+ A L L LDL G +L+ L KL+SL NIK
Sbjct: 425 VTDAGLSALTSLTGLTHLDLFGARITDSGTNHLRNLKKLQSLEICGGGLTDTGVKNIKDL 484
Query: 164 ---------WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 214
+ +TD ++ +SGLT L SL +S S+V+ SG+ +LK L+ L L LE C
Sbjct: 485 SSLTLLNLSQNSNLTDKTLELISGLTGLVSLNVSNSRVSSSGLRHLKPLKNLRSLTLESC 544
Query: 215 PVTAACLDSLSA 226
++A + L A
Sbjct: 545 KLSANDIRKLQA 556
>gi|115447277|ref|NP_001047418.1| Os02g0613200 [Oryza sativa Japonica Group]
gi|47497632|dbj|BAD19701.1| leucine-rich repeat-like protein [Oryza sativa Japonica Group]
gi|113536949|dbj|BAF09332.1| Os02g0613200 [Oryza sativa Japonica Group]
gi|125582867|gb|EAZ23798.1| hypothetical protein OsJ_07510 [Oryza sativa Japonica Group]
gi|215704406|dbj|BAG93840.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 582
Score = 514 bits (1323), Expect = e-143, Method: Compositional matrix adjust.
Identities = 268/393 (68%), Positives = 322/393 (81%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
+LPRD+SQQIFNELV S LTE LE FRDCALQD+ LG+YPGVND WM+V+ASQ SLL
Sbjct: 80 VLPRDLSQQIFNELVASNRLTETLLETFRDCALQDIDLGEYPGVNDAWMEVVASQRHSLL 139
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVD+S S++TDSGL L+DC N+QSL N+C IS+ GL L GLSNLTSLSF+ ++ IT
Sbjct: 140 SVDISCSEITDSGLYLLRDCPNMQSLACNYCDMISEHGLGILSGLSNLTSLSFKSSDGIT 199
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
A+ M+AFA L+NLV LDLERC +IHGGLV+LKGL LESLN+++CN I DSD+K LS LT
Sbjct: 200 AEAMEAFANLVNLVNLDLERCLKIHGGLVHLKGLRNLESLNMRYCNNIADSDIKYLSDLT 259
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
NLK LQ++C ++TD G++YL+GL KLT LNLEGCPVTAACL+++S L SL LNL+RC +
Sbjct: 260 NLKELQLACCRITDLGVSYLRGLSKLTQLNLEGCPVTAACLEAISGLASLVVLNLSRCGI 319
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
+GCE F + LKVLNLGFN ITD+CL HLK L NLESLNLDSC +GDEGL++L GL
Sbjct: 320 YGEGCENFQGLKKLKVLNLGFNNITDDCLAHLKELINLESLNLDSCKVGDEGLLHLRGLM 379
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
LK LELSDT+VGSSGL+HLSGL NLESINLSFT ++D ++K++ L+SLKS+NLD RQI
Sbjct: 380 LLKSLELSDTEVGSSGLQHLSGLRNLESINLSFTLVTDTGMKKISALNSLKSVNLDNRQI 439
Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
TD GLAALTSLTGLTHLDLFGARITD G + R
Sbjct: 440 TDVGLAALTSLTGLTHLDLFGARITDYGTSCFR 472
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 110/331 (33%), Positives = 164/331 (49%), Gaps = 56/331 (16%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
+++ DS + +L D +NL+ L C +I+D G+ +LRGLS LT L+ +TA ++A
Sbjct: 245 NNIADSDIKYLSDLTNLKELQL-ACCRITDLGVSYLRGLSKLTQLNLE-GCPVTAACLEA 302
Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNL---- 182
+GL +LV L+L RC G N +GL KL+ LN+ + N ITD + L L NL
Sbjct: 303 ISGLASLVVLNLSRCGIYGEGCENFQGLKKLKVLNLGFNN-ITDDCLAHLKELINLESLN 361
Query: 183 --------------------KSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
KSL++S ++V SG+ +L GL+ L +NL VT +
Sbjct: 362 LDSCKVGDEGLLHLRGLMLLKSLELSDTEVGSSGLQHLSGLRNLESINLSFTLVTDTGMK 421
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282
+SAL SL +NL+ Q++D G + + L L+L ITD + NLESL
Sbjct: 422 KISALNSLKSVNLDNRQITDVGLAALTSLTGLTHLDLFGARITDYGTSCFRFFKNLESLE 481
Query: 283 LDSCG--IGDEGL-----------------VNLT--------GLCNLKCLELSDTQVGSS 315
+ CG I D G+ VNLT GL L L +S+T+V ++
Sbjct: 482 V--CGGLITDAGVKNIKDLKALKQLNLSQNVNLTDKTLELISGLTALVSLNVSNTRVSNA 539
Query: 316 GLRHLSGLTNLESINLSFTGISDGSLRKLAG 346
GLRHL L NL S++L ++ ++KL
Sbjct: 540 GLRHLKDLQNLRSLSLDSCRVTTSEVKKLQA 570
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 103/190 (54%), Gaps = 26/190 (13%)
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
S++LS ++V SGL HL NL+S++ +F + ++D G++ + L++L S++ N IT
Sbjct: 383 SLELSDTEVGSSGLQHLSGLRNLESINLSFTL-VTDTGMKKISALNSLKSVNLD-NRQIT 440
Query: 121 AQGMKAFAGLINLVKLDL---------ERCTR---------IHGGLV------NLKGLMK 156
G+ A L L LDL C R + GGL+ N+K L
Sbjct: 441 DVGLAALTSLTGLTHLDLFGARITDYGTSCFRFFKNLESLEVCGGLITDAGVKNIKDLKA 500
Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
L+ LN+ +TD ++ +SGLT L SL +S ++V+++G+ +LK LQ L L+L+ C V
Sbjct: 501 LKQLNLSQNVNLTDKTLELISGLTALVSLNVSNTRVSNAGLRHLKDLQNLRSLSLDSCRV 560
Query: 217 TAACLDSLSA 226
T + + L A
Sbjct: 561 TTSEVKKLQA 570
>gi|357478391|ref|XP_003609481.1| F-box/LRR-repeat protein [Medicago truncatula]
gi|355510536|gb|AES91678.1| F-box/LRR-repeat protein [Medicago truncatula]
Length = 576
Score = 514 bits (1323), Expect = e-143, Method: Compositional matrix adjust.
Identities = 275/394 (69%), Positives = 320/394 (81%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
+LPRDISQ IFNELV S CLTE SL AFRDCALQD+ LG+Y GVND WMDVIASQG SLL
Sbjct: 74 ILPRDISQLIFNELVESHCLTETSLNAFRDCALQDVYLGEYLGVNDGWMDVIASQGPSLL 133
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
+VD+SGS+VTD GL LKDC NLQ+L N+C Q S+ GL+HL GLSNLTSLS R++ A+T
Sbjct: 134 AVDVSGSNVTDHGLRLLKDCLNLQALTLNYCDQFSEHGLKHLSGLSNLTSLSIRKSCAVT 193
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
GM+AF+ L+NL KLDLERC+ IHGG V+ KGL KLESLNI C C+TDSDMK +SG
Sbjct: 194 PDGMRAFSNLVNLEKLDLERCSDIHGGFVHFKGLKKLESLNIGCCKCVTDSDMKAISGFI 253
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
NLK LQIS S +TD GI+YL+GLQKL+ LN+EGC +TAAC + +SAL +L LNLNRC L
Sbjct: 254 NLKELQISNSSITDLGISYLRGLQKLSTLNVEGCSITAACFEYISALAALACLNLNRCGL 313
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
SDDG EKFS + LK L+L FN+ITD CLVHLKGLT LE LNLDSC IGDEGLVNLTGL
Sbjct: 314 SDDGFEKFSGLTGLKRLSLAFNKITDACLVHLKGLTKLEYLNLDSCQIGDEGLVNLTGLT 373
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
LK L LSDT+VG+SG+R++SGL LE +NLSFT ++D L++L GL++LKSLNLDARQI
Sbjct: 374 LLKSLVLSDTEVGNSGIRYISGLNKLEDLNLSFTSVTDNGLKRLLGLTNLKSLNLDARQI 433
Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRS 394
TD GLA LTSL+GL LDLFGARITDSG YLRS
Sbjct: 434 TDAGLANLTSLSGLITLDLFGARITDSGTTYLRS 467
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 80/233 (34%), Positives = 135/233 (57%), Gaps = 4/233 (1%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+ L + L+ + +TD+ L+HLK + L+ L+ + C QI D GL +L GL+ L SL +
Sbjct: 325 TGLKRLSLAFNKITDACLVHLKGLTKLEYLNLDSC-QIGDEGLVNLTGLTLLKSLVLS-D 382
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+ G++ +GL L L+L + GL L GL L+SLN+ ITD+ + L
Sbjct: 383 TEVGNSGIRYISGLNKLEDLNLSFTSVTDNGLKRLLGLTNLKSLNLD-ARQITDAGLANL 441
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ L+ L +L + +++TDSG YL+ + L L + G +T A + ++ + SL LNL+
Sbjct: 442 TSLSGLITLDLFGARITDSGTTYLRSFKNLQSLEICGGLLTDAGVKNIREIVSLTQLNLS 501
Query: 237 R-CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 288
+ C+L+D E S + +L+ LN+ + +T+E L +LK L NL +L+L+SC +
Sbjct: 502 QNCKLTDKTLELISGMTALRSLNVSNSRVTNEGLRYLKPLKNLRTLSLESCKV 554
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 92/165 (55%), Gaps = 2/165 (1%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
++LS + VTD+GL L +NL+SL+ + QI+D GL +L LS L +L IT
Sbjct: 402 LNLSFTSVTDNGLKRLLGLTNLKSLNLD-ARQITDAGLANLTSLSGLITLDLF-GARITD 459
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
G NL L++ G+ N++ ++ L LN+ +TD ++ +SG+T
Sbjct: 460 SGTTYLRSFKNLQSLEICGGLLTDAGVKNIREIVSLTQLNLSQNCKLTDKTLELISGMTA 519
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 226
L+SL +S S+VT+ G+ YLK L+ L L+LE C V AA + L +
Sbjct: 520 LRSLNVSNSRVTNEGLRYLKPLKNLRTLSLESCKVNAADIKKLHS 564
>gi|356562920|ref|XP_003549716.1| PREDICTED: F-box/LRR-repeat protein 14-like [Glycine max]
Length = 580
Score = 513 bits (1320), Expect = e-143, Method: Compositional matrix adjust.
Identities = 268/394 (68%), Positives = 316/394 (80%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
+LPRDISQQIFNELV S CLT++SLEAFRDCALQD+ LG+Y GV+D WMDVI+SQG SLL
Sbjct: 78 ILPRDISQQIFNELVDSHCLTQLSLEAFRDCALQDIDLGEYVGVSDDWMDVISSQGLSLL 137
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVD+SGS VTD+GL LKDCSNLQ+L NFC Q S+ GL+H+ GLSNLTSLS R+++ +
Sbjct: 138 SVDVSGSQVTDNGLRFLKDCSNLQALTLNFCDQFSEYGLKHISGLSNLTSLSIRKSSTVK 197
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
GM+AF+ L NL KLDLERC+ IHGG V+LKGL KLE LNI C C+ DSDMK +S L
Sbjct: 198 PDGMRAFSNLFNLEKLDLERCSDIHGGFVHLKGLKKLEYLNIGCCKCVMDSDMKSISELI 257
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
NLK LQIS S +TD GI YL+GL+ LT LN+EGC +TAACL+ + AL SL LNLNRC L
Sbjct: 258 NLKELQISNSSITDIGITYLRGLKMLTTLNVEGCNITAACLEFIHALASLACLNLNRCGL 317
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
SDDG EK S + +LK L+L FN ITD CLVHLKGLTNLE LNLD C IGD+GL NLTGL
Sbjct: 318 SDDGFEKISGLKNLKRLSLAFNRITDACLVHLKGLTNLEYLNLDYCRIGDDGLANLTGLT 377
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
LK L LSDT +G+SGLRH+SGL LE +NLSFT ++D L++L+GL+ LKSLNLDARQI
Sbjct: 378 LLKSLVLSDTDIGNSGLRHISGLKKLEDLNLSFTTVTDHGLKRLSGLTQLKSLNLDARQI 437
Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRS 394
TD GLA LTSL+GL LDLFGARI+D+G +LRS
Sbjct: 438 TDAGLANLTSLSGLIALDLFGARISDNGTTFLRS 471
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 92/287 (32%), Positives = 158/287 (55%), Gaps = 4/287 (1%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L ++++ G ++T + L + ++L L+ N C +SD G E + GL NL LS N
Sbjct: 283 LTTLNVEGCNITAACLEFIHALASLACLNLNRC-GLSDDGFEKISGLKNLKRLSLAFNR- 340
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
IT + GL NL L+L+ C GL NL GL L+SL + + I +S ++ +SG
Sbjct: 341 ITDACLVHLKGLTNLEYLNLDYCRIGDDGLANLTGLTLLKSLVLSDTD-IGNSGLRHISG 399
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
L L+ L +S + VTD G+ L GL +L LNL+ +T A L +L++L L L+L
Sbjct: 400 LKKLEDLNLSFTTVTDHGLKRLSGLTQLKSLNLDARQITDAGLANLTSLSGLIALDLFGA 459
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL-DSCGIGDEGLVNLT 297
++SD+G L+ L + +TD + +++ + +L LNL +C + D+ L ++
Sbjct: 460 RISDNGTTFLRSFKILQSLEICGGGLTDAGVKNIREIVSLTQLNLSQNCNLTDKTLELIS 519
Query: 298 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 344
G+ L+ L +S++++ + GLR+L L NL ++ L ++ ++KL
Sbjct: 520 GMTALRSLNVSNSRITNEGLRYLKPLKNLRTLTLESCKVTASEIKKL 566
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 80/232 (34%), Positives = 136/232 (58%), Gaps = 4/232 (1%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
+L + L+ + +TD+ L+HLK +NL+ L+ ++C +I D GL +L GL+ L SL +
Sbjct: 330 NLKRLSLAFNRITDACLVHLKGLTNLEYLNLDYC-RIGDDGLANLTGLTLLKSLVLS-DT 387
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
I G++ +GL L L+L T GL L GL +L+SLN+ ITD+ + L+
Sbjct: 388 DIGNSGLRHISGLKKLEDLNLSFTTVTDHGLKRLSGLTQLKSLNLD-ARQITDAGLANLT 446
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
L+ L +L + ++++D+G +L+ + L L + G +T A + ++ + SL LNL++
Sbjct: 447 SLSGLIALDLFGARISDNGTTFLRSFKILQSLEICGGGLTDAGVKNIREIVSLTQLNLSQ 506
Query: 238 -CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 288
C L+D E S + +L+ LN+ + IT+E L +LK L NL +L L+SC +
Sbjct: 507 NCNLTDKTLELISGMTALRSLNVSNSRITNEGLRYLKPLKNLRTLTLESCKV 558
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 98/192 (51%), Gaps = 26/192 (13%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L S+ LS +D+ +SGL H+ L+ L+ +F ++D GL+ L GL+ L SL+
Sbjct: 379 LKSLVLSDTDIGNSGLRHISGLKKLEDLNLSF-TTVTDHGLKRLSGLTQLKSLNLDARQ- 436
Query: 119 ITAQGMKAFAGLINLVKLDLE------------RCTRI------------HGGLVNLKGL 154
IT G+ L L+ LDL R +I G+ N++ +
Sbjct: 437 ITDAGLANLTSLSGLIALDLFGARISDNGTTFLRSFKILQSLEICGGGLTDAGVKNIREI 496
Query: 155 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 214
+ L LN+ +TD ++ +SG+T L+SL +S S++T+ G+ YLK L+ L L LE C
Sbjct: 497 VSLTQLNLSQNCNLTDKTLELISGMTALRSLNVSNSRITNEGLRYLKPLKNLRTLTLESC 556
Query: 215 PVTAACLDSLSA 226
VTA+ + L +
Sbjct: 557 KVTASEIKKLQS 568
>gi|125540271|gb|EAY86666.1| hypothetical protein OsI_08050 [Oryza sativa Indica Group]
Length = 582
Score = 511 bits (1315), Expect = e-142, Method: Compositional matrix adjust.
Identities = 267/393 (67%), Positives = 321/393 (81%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
+LPRD+SQQIFNELV S LTE LE F DCALQD+ LG+YPGVND WM+V+ASQ SLL
Sbjct: 80 VLPRDLSQQIFNELVASNRLTETLLETFWDCALQDIDLGEYPGVNDAWMEVVASQRHSLL 139
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVD+S S++TDSGL L+DC N+QSL N+C IS+ GL L GLSNLTSLSF+ ++ IT
Sbjct: 140 SVDISCSEITDSGLYLLRDCPNMQSLACNYCDMISEHGLGILSGLSNLTSLSFKSSDGIT 199
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
A+ M+AFA L+NLV LDLERC +IHGGLV+LKGL LESLN+++CN I DSD+K LS LT
Sbjct: 200 AEAMEAFANLVNLVNLDLERCLKIHGGLVHLKGLRNLESLNMRYCNNIADSDIKYLSDLT 259
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
NLK LQ++C ++TD G++YL+GL KLT LNLEGCPVTAACL+++S L SL LNL+RC +
Sbjct: 260 NLKELQLACCRITDLGVSYLRGLSKLTQLNLEGCPVTAACLEAISGLASLVVLNLSRCGI 319
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
+GCE F + LKVLNLGFN ITD+CL HLK L NLESLNLDSC +GDEGL++L GL
Sbjct: 320 YGEGCENFQGLKKLKVLNLGFNNITDDCLAHLKELINLESLNLDSCKVGDEGLLHLRGLM 379
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
LK LELSDT+VGSSGL+HLSGL NLESINLSFT ++D ++K++ L+SLKS+NLD RQI
Sbjct: 380 LLKSLELSDTEVGSSGLQHLSGLRNLESINLSFTLVTDTGMKKISALNSLKSVNLDNRQI 439
Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
TD GLAALTSLTGLTHLDLFGARITD G + R
Sbjct: 440 TDVGLAALTSLTGLTHLDLFGARITDYGTSCFR 472
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 109/331 (32%), Positives = 164/331 (49%), Gaps = 56/331 (16%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
+++ DS + +L D +NL+ L C +I+D G+ +LRGLS LT L+ +TA ++A
Sbjct: 245 NNIADSDIKYLSDLTNLKELQL-ACCRITDLGVSYLRGLSKLTQLNLE-GCPVTAACLEA 302
Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNL---- 182
+GL +LV L+L RC G N +GL KL+ LN+ + N ITD + L L NL
Sbjct: 303 ISGLASLVVLNLSRCGIYGEGCENFQGLKKLKVLNLGFNN-ITDDCLAHLKELINLESLN 361
Query: 183 --------------------KSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
KSL++S ++V SG+ +L GL+ L +NL VT +
Sbjct: 362 LDSCKVGDEGLLHLRGLMLLKSLELSDTEVGSSGLQHLSGLRNLESINLSFTLVTDTGMK 421
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282
+SAL SL +NL+ Q++D G + + L L+L ITD + NLESL
Sbjct: 422 KISALNSLKSVNLDNRQITDVGLAALTSLTGLTHLDLFGARITDYGTSCFRFFKNLESLE 481
Query: 283 LDSCG--IGDEGL-----------------VNLT--------GLCNLKCLELSDTQVGSS 315
+ CG I D G+ VNLT GL L L +S+T++ ++
Sbjct: 482 V--CGGLITDAGVKNIKDLKALKQLNLSQNVNLTDKTLELISGLTALVSLNVSNTRISNA 539
Query: 316 GLRHLSGLTNLESINLSFTGISDGSLRKLAG 346
GLRHL L NL S++L ++ ++KL
Sbjct: 540 GLRHLKDLQNLRSLSLDSCRVTTSEVKKLQA 570
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 103/190 (54%), Gaps = 26/190 (13%)
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
S++LS ++V SGL HL NL+S++ +F + ++D G++ + L++L S++ N IT
Sbjct: 383 SLELSDTEVGSSGLQHLSGLRNLESINLSFTL-VTDTGMKKISALNSLKSVNLD-NRQIT 440
Query: 121 AQGMKAFAGLINLVKLDL---------ERCTR---------IHGGLV------NLKGLMK 156
G+ A L L LDL C R + GGL+ N+K L
Sbjct: 441 DVGLAALTSLTGLTHLDLFGARITDYGTSCFRFFKNLESLEVCGGLITDAGVKNIKDLKA 500
Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
L+ LN+ +TD ++ +SGLT L SL +S ++++++G+ +LK LQ L L+L+ C V
Sbjct: 501 LKQLNLSQNVNLTDKTLELISGLTALVSLNVSNTRISNAGLRHLKDLQNLRSLSLDSCRV 560
Query: 217 TAACLDSLSA 226
T + + L A
Sbjct: 561 TTSEVKKLQA 570
>gi|356548547|ref|XP_003542662.1| PREDICTED: F-box/LRR-repeat protein 14-like [Glycine max]
Length = 578
Score = 508 bits (1309), Expect = e-141, Method: Compositional matrix adjust.
Identities = 266/394 (67%), Positives = 317/394 (80%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
+LPRDISQQIFNELV S CLTEVSLEAFRDCALQD+ LG+Y GVND WMDVI+SQG SLL
Sbjct: 76 ILPRDISQQIFNELVDSHCLTEVSLEAFRDCALQDIDLGEYVGVNDDWMDVISSQGLSLL 135
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVD++GS VTD GL LKDCS+LQ+L ++C Q S+ GL+H+ GLSNLTSLS R+++++
Sbjct: 136 SVDVAGSQVTDDGLRLLKDCSSLQALTLSYCDQFSEYGLKHISGLSNLTSLSIRKSSSVK 195
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
GM+AF+ L NL KLDLERC+ IHGG V+LKGL KLE LNI C C+TDSD+K +S L
Sbjct: 196 PDGMRAFSNLFNLEKLDLERCSEIHGGFVHLKGLKKLEYLNIGCCKCVTDSDIKSISELI 255
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
NLK LQIS S +TD GI YL+GL+KLT LN+EGC +TAACL+ + AL SL LNLNRC L
Sbjct: 256 NLKELQISNSSITDIGITYLRGLEKLTTLNVEGCNITAACLEFIHALTSLACLNLNRCGL 315
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
SDDG EK S + +LK L+L FN ITD CLVHLK LTNLE LNLDSC IGD GL NLTGL
Sbjct: 316 SDDGFEKISGLKNLKRLSLAFNRITDACLVHLKDLTNLEYLNLDSCRIGDGGLANLTGLT 375
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
LK L LSDT +G+SGLR++SGL LE +N+SFT ++D L++L+GL+ LKSLNLDARQI
Sbjct: 376 LLKSLVLSDTDIGNSGLRYISGLKKLEDLNVSFTTVTDNGLKRLSGLTQLKSLNLDARQI 435
Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRS 394
TD GLA LTSL+GL LDLFGARI+D+G +LRS
Sbjct: 436 TDAGLANLTSLSGLITLDLFGARISDNGTTFLRS 469
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 93/287 (32%), Positives = 160/287 (55%), Gaps = 4/287 (1%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L ++++ G ++T + L + ++L L+ N C +SD G E + GL NL LS N
Sbjct: 281 LTTLNVEGCNITAACLEFIHALTSLACLNLNRC-GLSDDGFEKISGLKNLKRLSLAFNR- 338
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
IT + L NL L+L+ C GGL NL GL L+SL + + I +S ++ +SG
Sbjct: 339 ITDACLVHLKDLTNLEYLNLDSCRIGDGGLANLTGLTLLKSLVLSDTD-IGNSGLRYISG 397
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
L L+ L +S + VTD+G+ L GL +L LNL+ +T A L +L++L L L+L
Sbjct: 398 LKKLEDLNVSFTTVTDNGLKRLSGLTQLKSLNLDARQITDAGLANLTSLSGLITLDLFGA 457
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL-DSCGIGDEGLVNLT 297
++SD+G +L+ L + +TD + +++ + +L LNL +C + D+ L ++
Sbjct: 458 RISDNGTTFLRSFKNLQSLEICGGGLTDAGVKNIREIVSLTQLNLSQNCNLTDKTLELIS 517
Query: 298 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 344
G+ L+ L +S++++ + GLRHL L NL ++ L ++ ++KL
Sbjct: 518 GMTALRSLNVSNSRITNEGLRHLKPLKNLRTLTLESCKVTASGIKKL 564
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 88/248 (35%), Positives = 144/248 (58%), Gaps = 6/248 (2%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
+L + L+ + +TD+ L+HLKD +NL+ L+ + C +I DGGL +L GL+ L SL +
Sbjct: 328 NLKRLSLAFNRITDACLVHLKDLTNLEYLNLDSC-RIGDGGLANLTGLTLLKSLVLS-DT 385
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
I G++ +GL L L++ T GL L GL +L+SLN+ ITD+ + L+
Sbjct: 386 DIGNSGLRYISGLKKLEDLNVSFTTVTDNGLKRLSGLTQLKSLNLD-ARQITDAGLANLT 444
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
L+ L +L + ++++D+G +L+ + L L + G +T A + ++ + SL LNL++
Sbjct: 445 SLSGLITLDLFGARISDNGTTFLRSFKNLQSLEICGGGLTDAGVKNIREIVSLTQLNLSQ 504
Query: 238 -CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
C L+D E S + +L+ LN+ + IT+E L HLK L NL +L L+SC + G+ L
Sbjct: 505 NCNLTDKTLELISGMTALRSLNVSNSRITNEGLRHLKPLKNLRTLTLESCKVTASGIKKL 564
Query: 297 --TGLCNL 302
T L NL
Sbjct: 565 QSTDLPNL 572
>gi|242076388|ref|XP_002448130.1| hypothetical protein SORBIDRAFT_06g021780 [Sorghum bicolor]
gi|241939313|gb|EES12458.1| hypothetical protein SORBIDRAFT_06g021780 [Sorghum bicolor]
Length = 581
Score = 505 bits (1300), Expect = e-140, Method: Compositional matrix adjust.
Identities = 270/393 (68%), Positives = 319/393 (81%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
+LPRD+SQQIFNELV CLTE SL AFRDCALQD+CLG YPGV D WM+V+ASQG SLL
Sbjct: 79 LLPRDLSQQIFNELVECGCLTEASLGAFRDCALQDVCLGDYPGVTDAWMEVVASQGQSLL 138
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVDLS SDVTDSG LKDCS++QSL ++C +IS+ GL+ L G SNLTSLS ++ A+T
Sbjct: 139 SVDLSCSDVTDSGFNLLKDCSSMQSLACDYCDKISEHGLKTLSGFSNLTSLSIKKCAAVT 198
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
A+G KAFA L+NLV LDLERC +IHGGL++LKGL KLE LN+++CNCITDSDMK LS LT
Sbjct: 199 AEGAKAFANLVNLVNLDLERCPKIHGGLIHLKGLKKLEKLNMRYCNCITDSDMKYLSDLT 258
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
NL+ LQ+S K++D G++YL+GL KL LNLEGC VTAACL+ +S L SL LNL+RC +
Sbjct: 259 NLRELQLSSCKISDFGVSYLRGLHKLGHLNLEGCSVTAACLEVISELASLVLLNLSRCGI 318
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
D+GCE + LK LNLGFN IT CL+HLK L +LE LNLDSC IGDEGL +L GL
Sbjct: 319 CDEGCENLEGLTKLKALNLGFNHITGACLIHLKDLISLECLNLDSCKIGDEGLFHLKGLI 378
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
LK LELSDT+VGS+GLRHLSGL NL+SINLSFT ++D L+K++GLSSLKSLNLD RQI
Sbjct: 379 QLKSLELSDTEVGSNGLRHLSGLRNLQSINLSFTLVTDIGLKKISGLSSLKSLNLDNRQI 438
Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
TDTGLA+LT+LTGLTHLDLFGARITDSG R
Sbjct: 439 TDTGLASLTNLTGLTHLDLFGARITDSGMNCFR 471
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 116/326 (35%), Positives = 181/326 (55%), Gaps = 4/326 (1%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TDS + +L D +NL+ L + C +ISD G+ +LRGL L L+ ++TA ++ +
Sbjct: 246 ITDSDMKYLSDLTNLRELQLSSC-KISDFGVSYLRGLHKLGHLNLE-GCSVTAACLEVIS 303
Query: 129 GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
L +LV L+L RC G NL+GL KL++LN+ + N IT + + L L +L+ L +
Sbjct: 304 ELASLVLLNLSRCGICDEGCENLEGLTKLKALNLGF-NHITGACLIHLKDLISLECLNLD 362
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 248
K+ D G+ +LKGL +L L L V + L LS L +L +NL+ ++D G +K
Sbjct: 363 SCKIGDEGLFHLKGLIQLKSLELSDTEVGSNGLRHLSGLRNLQSINLSFTLVTDIGLKKI 422
Query: 249 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 308
S + SLK LNL +ITD L L LT L L+L I D G+ NL+ LE+
Sbjct: 423 SGLSSLKSLNLDNRQITDTGLASLTNLTGLTHLDLFGARITDSGMNCFRFFKNLQSLEVC 482
Query: 309 DTQVGSSGLRHLSGLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 367
+ +G++++ L L +NLS G ++D +L ++GL++L SLN+ +++++GL
Sbjct: 483 GGLITDAGVKNIKDLKALTLLNLSQNGNLTDKTLELISGLTALVSLNVSNSRVSNSGLHH 542
Query: 368 LTSLTGLTHLDLFGARITDSGAAYLR 393
L L L L L R+T S LR
Sbjct: 543 LKPLLNLRSLSLESCRVTASEIDKLR 568
Score = 38.5 bits (88), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 57/103 (55%), Gaps = 2/103 (1%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
+L S+++ G +TD+G+ ++KD L L+ + ++D LE + GL+ L SL+ N+
Sbjct: 475 NLQSLEVCGGLITDAGVKNIKDLKALTLLNLSQNGNLTDKTLELISGLTALVSLNV-SNS 533
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 160
++ G+ L+NL L LE C R+ ++ L+ L +L
Sbjct: 534 RVSNSGLHHLKPLLNLRSLSLESC-RVTASEIDKLRLVALPNL 575
>gi|356519278|ref|XP_003528300.1| PREDICTED: F-box/LRR-repeat protein 14-like isoform 2 [Glycine max]
Length = 529
Score = 503 bits (1294), Expect = e-140, Method: Compositional matrix adjust.
Identities = 275/419 (65%), Positives = 321/419 (76%), Gaps = 25/419 (5%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
MLPRDISQ IFN LVYSR LT SLEAFRDCALQDL LG+Y GVND WM VI+SQGSSLL
Sbjct: 75 MLPRDISQLIFNNLVYSRRLTSASLEAFRDCALQDLYLGEYDGVNDNWMGVISSQGSSLL 134
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVDLSGSDVTD GL +LKDC +L SL+ N+C QISD GLE + GLSNLTSLSFRRN++I+
Sbjct: 135 SVDLSGSDVTDFGLTYLKDCESLISLNLNYCDQISDRGLECISGLSNLTSLSFRRNDSIS 194
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
AQGM AF+GL+NLVKLDLERC IHGGLV+L+GL KLESLN+KWCNCITD DMKPLS L
Sbjct: 195 AQGMSAFSGLVNLVKLDLERCPGIHGGLVHLRGLTKLESLNLKWCNCITDYDMKPLSELA 254
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
+LKSL+IS SKVTD GI++LKGLQKL LLNLEGC VTAACLDSL+ L +L LNLNRC L
Sbjct: 255 SLKSLEISSSKVTDFGISFLKGLQKLALLNLEGCLVTAACLDSLAELPALSNLNLNRCNL 314
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
SD+GC+K S++ +LKVLNLGFN ITD CLVHLKGLT LESLNLDSC IGDEGLVNL GL
Sbjct: 315 SDNGCKKISRLENLKVLNLGFNVITDACLVHLKGLTKLESLNLDSCKIGDEGLVNLAGLE 374
Query: 301 NLKCLELSDTQVGSSGLRHLSGLT------------------------NLESINLSFTGI 336
L CLELSDT+VGS+GL HLSGLT NL S+ + +
Sbjct: 375 QLNCLELSDTEVGSNGLHHLSGLTGLTDLDLFGARITDFGTNYLKKFKNLRSLEICGGVL 434
Query: 337 SDGSLRKLAGLSSLKSLNLDAR-QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRS 394
+D ++ + LSSL LNL +TD L ++ LTGL L++ +RIT++G +L++
Sbjct: 435 TDAGVKNIKELSSLVCLNLSQNSNLTDKTLELISGLTGLVSLNVSNSRITNAGLQHLKT 493
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 99/294 (33%), Positives = 154/294 (52%), Gaps = 11/294 (3%)
Query: 38 LGQYPGVNDKWMDVIA-------SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNF 90
L + +N KW + I S+ +SL S+++S S VTD G+ LK L L+
Sbjct: 228 LTKLESLNLKWCNCITDYDMKPLSELASLKSLEISSSKVTDFGISFLKGLQKLALLNLEG 287
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN 150
C+ ++ L+ L L L++L+ R N ++ G K + L NL L+L LV+
Sbjct: 288 CL-VTAACLDSLAELPALSNLNLNRCN-LSDNGCKKISRLENLKVLNLGFNVITDACLVH 345
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
LKGL KLESLN+ C I D + L+GL L L++S ++V +G+ +L GL LT L+
Sbjct: 346 LKGLTKLESLNLDSCK-IGDEGLVNLAGLEQLNCLELSDTEVGSNGLHHLSGLTGLTDLD 404
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE-ITDECL 269
L G +T + L +L L + L+D G + ++ SL LNL N +TD+ L
Sbjct: 405 LFGARITDFGTNYLKKFKNLRSLEICGGVLTDAGVKNIKELSSLVCLNLSQNSNLTDKTL 464
Query: 270 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 323
+ GLT L SLN+ + I + GL +L L NL+ L L +V ++ ++ L +
Sbjct: 465 ELISGLTGLVSLNVSNSRITNAGLQHLKTLKNLRSLTLESCKVTANDIKKLKSI 518
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/191 (33%), Positives = 99/191 (51%), Gaps = 29/191 (15%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TD+ L+HLK + L+SL+ + C +I D GL +L GL L L + + + G+ +
Sbjct: 338 ITDACLVHLKGLTKLESLNLDSC-KIGDEGLVNLAGLEQLNCLELS-DTEVGSNGLHHLS 395
Query: 129 GLINLVKLDLE------------------RCTRIHGGLV------NLKGLMKLESLNIKW 164
GL L LDL R I GG++ N+K L L LN+
Sbjct: 396 GLTGLTDLDLFGARITDFGTNYLKKFKNLRSLEICGGVLTDAGVKNIKELSSLVCLNLSQ 455
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
+ +TD ++ +SGLT L SL +S S++T++G+ +LK L+ L L LE C VTA + +
Sbjct: 456 NSNLTDKTLELISGLTGLVSLNVSNSRITNAGLQHLKTLKNLRSLTLESCKVTA---NDI 512
Query: 225 SALGSLFYLNL 235
L S++ NL
Sbjct: 513 KKLKSIYLPNL 523
>gi|326497793|dbj|BAJ98524.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 583
Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust.
Identities = 263/393 (66%), Positives = 317/393 (80%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
MLP DISQQIF+ELV S LTE SLE FRDCAL D+CLG+YPGV D WM+V+ASQ SLL
Sbjct: 81 MLPSDISQQIFDELVGSNRLTEESLETFRDCALHDICLGEYPGVTDAWMEVVASQRQSLL 140
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVD+S S+VTD GL L DCS++QSL N+C ++S+ G+ L G SNLTSLSF+R++ +T
Sbjct: 141 SVDISCSEVTDGGLNFLSDCSSMQSLSCNYCDRVSEHGIGVLSGFSNLTSLSFKRSDGVT 200
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
A+GM FA L+NLV LDLE C +IHGGLV++KGL KLESLN+++CN ITDSD+K LS LT
Sbjct: 201 AEGMSVFADLVNLVNLDLECCLKIHGGLVHMKGLRKLESLNMRYCNYITDSDIKYLSDLT 260
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
NLK LQ+S ++TD G++YL GL KLT LNLE CPVTAACL+++S L SL LNLNRC +
Sbjct: 261 NLKELQLSSCRITDLGVSYLTGLSKLTHLNLESCPVTAACLEAISGLASLMLLNLNRCGI 320
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
D+GCE F + LKVLNLGFN ITD CLVHLKGL NLESLNLDSC IGDEGL++L GL
Sbjct: 321 YDEGCESFEDLKKLKVLNLGFNHITDACLVHLKGLINLESLNLDSCKIGDEGLLHLKGLV 380
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
LK LELSDT +GS+GL+HLSGL NL SINLSFT ++D ++K++ L+SLKS+NLD R I
Sbjct: 381 LLKSLELSDTAIGSNGLQHLSGLRNLHSINLSFTLVTDTGMKKISTLNSLKSVNLDNRLI 440
Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
TD GLAAL LTGLTHLDLFGAR+TD G ++LR
Sbjct: 441 TDVGLAALIGLTGLTHLDLFGARVTDHGTSFLR 473
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 97/191 (50%), Gaps = 28/191 (14%)
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
S++LS + + +GL HL NL S++ +F + ++D G++ + L++L S++ N IT
Sbjct: 384 SLELSDTAIGSNGLQHLSGLRNLHSINLSFTL-VTDTGMKKISTLNSLKSVNLD-NRLIT 441
Query: 121 AQGMKAFAGLINLVKLDL--ERCTRIHG-----------------------GLVNLKGLM 155
G+ A GL L LDL R T HG G+ N+K L
Sbjct: 442 DVGLAALIGLTGLTHLDLFGARVTD-HGTSFLRYFKNLESLEVCGGSITDAGVKNIKDLK 500
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215
L LN+ +TD ++ +SGLT L SL +S S+V+++G +LK LQ L L L+ C
Sbjct: 501 ALTLLNLSQNAKLTDKTLELISGLTALVSLNVSNSRVSNAGFRHLKALQNLRSLTLDSCR 560
Query: 216 VTAACLDSLSA 226
VT + L A
Sbjct: 561 VTVNEMKKLRA 571
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 82/169 (48%), Gaps = 8/169 (4%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR 103
V D M I++ +SL SV+L +TD GL L + L LD F +++D G LR
Sbjct: 416 VTDTGMKKISTL-NSLKSVNLDNRLITDVGLAALIGLTGLTHLDL-FGARVTDHGTSFLR 473
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL-KGLMKLESLNI 162
NL SL +IT G+K L L L+L + ++ + L GL L SLN+
Sbjct: 474 YFKNLESLEVC-GGSITDAGVKNIKDLKALTLLNLSQNAKLTDKTLELISGLTALVSLNV 532
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
++++ + L L NL+SL + +VT + +K L+ L NL
Sbjct: 533 SNSR-VSNAGFRHLKALQNLRSLTLDSCRVT---VNEMKKLRATALPNL 577
>gi|357150116|ref|XP_003575347.1| PREDICTED: F-box/LRR-repeat protein 14-like [Brachypodium
distachyon]
Length = 582
Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust.
Identities = 262/393 (66%), Positives = 318/393 (80%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
+LP D+SQQ+FN+LV S CL E SLE FRDCAL D+CLG++PGV D WM+V+ASQ SLL
Sbjct: 80 VLPSDLSQQVFNQLVDSNCLKEASLETFRDCALHDICLGEFPGVKDAWMEVVASQRQSLL 139
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVD+S S+VTDSGL L+DCSN+QSL N+C QIS+ GL L G SNLTSLSF+R++ +T
Sbjct: 140 SVDISCSEVTDSGLNLLRDCSNMQSLVCNYCDQISEHGLGVLSGFSNLTSLSFKRSDGVT 199
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
A+GM+ FA L+NLV LDLERC +IHGGLV+LKGL KLES+N+++CN ITDSD+K LS LT
Sbjct: 200 AEGMRVFANLVNLVNLDLERCLKIHGGLVHLKGLRKLESINMRYCNNITDSDIKYLSDLT 259
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
NLK LQ+S ++TD G++YL+GL KL LNLE CPVTAACL +S L SL LNLNRC +
Sbjct: 260 NLKELQLSSCRITDLGVSYLRGLSKLIRLNLESCPVTAACLVDISGLASLMLLNLNRCGI 319
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
D+GCE F + LKVLNLGFN ITD CLVHLK L NLE LNLDSC +GD GL++L GL
Sbjct: 320 YDEGCESFKDLKKLKVLNLGFNYITDACLVHLKELINLEFLNLDSCKVGDAGLLHLKGLV 379
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
LK LELSDT+VGS+GLRHLSGL L+ I+LSFT ++D ++K++ LSSLKS+NLD+R I
Sbjct: 380 LLKSLELSDTEVGSNGLRHLSGLRTLQRIDLSFTLVTDTGMKKISALSSLKSVNLDSRLI 439
Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
TD GLAALT LTGLTHLDLFGARITD+GA+ R
Sbjct: 440 TDVGLAALTGLTGLTHLDLFGARITDNGASCFR 472
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 96/190 (50%), Gaps = 26/190 (13%)
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
S++LS ++V +GL HL LQ +D +F + ++D G++ + LS+L S++ + IT
Sbjct: 383 SLELSDTEVGSNGLRHLSGLRTLQRIDLSFTL-VTDTGMKKISALSSLKSVNLD-SRLIT 440
Query: 121 AQGMKAFAGLINLVKLDL---------ERCTRIHG---------------GLVNLKGLMK 156
G+ A GL L LDL C R G+ N+K L
Sbjct: 441 DVGLAALTGLTGLTHLDLFGARITDNGASCFRYFKNLESLEACGGSITDVGVKNIKELKA 500
Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
L LN+ +TD ++ +SGLT L SL +S S+V+++G+ +L LQ L L L+ C V
Sbjct: 501 LTLLNLSQNANLTDKTLELISGLTALVSLNVSNSRVSNAGLRHLNALQNLRSLTLDSCRV 560
Query: 217 TAACLDSLSA 226
TA + L A
Sbjct: 561 TANEIRKLQA 570
>gi|226501144|ref|NP_001141453.1| uncharacterized protein LOC100273563 [Zea mays]
gi|194704638|gb|ACF86403.1| unknown [Zea mays]
gi|414586493|tpg|DAA37064.1| TPA: regulatory subunit [Zea mays]
Length = 581
Score = 493 bits (1270), Expect = e-137, Method: Compositional matrix adjust.
Identities = 267/393 (67%), Positives = 317/393 (80%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
+LPRD+SQQIFNELV CLTE SL AFRDC LQD+CLG YPGV D WM+V+ASQG SLL
Sbjct: 79 LLPRDLSQQIFNELVECGCLTEASLGAFRDCDLQDICLGDYPGVTDAWMEVVASQGQSLL 138
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVDLS SDVTDSG LKDCS++QSL ++C QIS+ GL+ L G SNLTSLS ++ A+T
Sbjct: 139 SVDLSCSDVTDSGFNLLKDCSSMQSLACDYCDQISEHGLKTLSGFSNLTSLSIKKCAAVT 198
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
A+G KAFA L+NLV LDLERC +I+GGL++LKGL KLE LN+++CN ITDSDMK LS LT
Sbjct: 199 AEGAKAFANLVNLVNLDLERCPKINGGLIHLKGLKKLEKLNLRYCNGITDSDMKYLSDLT 258
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
NL+ LQ+S K++ G++YL+GL KL LNLEGC VTA CL+ +S L SL LNL+RC +
Sbjct: 259 NLRELQLSSCKISAFGVSYLRGLHKLGHLNLEGCAVTAVCLEVISELASLVLLNLSRCGI 318
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
D+GCE + LK L+LGFN+ITD CL+HLK L NLE LNLDSC IGDEGL +L GL
Sbjct: 319 CDEGCENLKGLTKLKALSLGFNQITDACLIHLKDLVNLECLNLDSCKIGDEGLFHLKGLI 378
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
LK LELSDT+VGS+GLRHLSGL NL+SINLSFT ++D L+K++GLSSLKSLNLD RQI
Sbjct: 379 QLKNLELSDTEVGSNGLRHLSGLRNLQSINLSFTLVTDIGLKKISGLSSLKSLNLDNRQI 438
Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
TDTGLA+LT LTGLTHLDLFGARITDSG + R
Sbjct: 439 TDTGLASLTGLTGLTHLDLFGARITDSGMSCFR 471
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 109/325 (33%), Positives = 162/325 (49%), Gaps = 52/325 (16%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TDS + +L D +NL+ L + C +IS G+ +LRGL L L+ A+TA ++ +
Sbjct: 246 ITDSDMKYLSDLTNLRELQLSSC-KISAFGVSYLRGLHKLGHLNLE-GCAVTAVCLEVIS 303
Query: 129 GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
L +LV L+L RC G NLKGL KL++L++ + N ITD+ + L L NL+ L +
Sbjct: 304 ELASLVLLNLSRCGICDEGCENLKGLTKLKALSLGF-NQITDACLIHLKDLVNLECLNLD 362
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 248
K+ D G+ +LKGL +L L L V + L LS L +L +NL+ ++D G +K
Sbjct: 363 SCKIGDEGLFHLKGLIQLKNLELSDTEVGSNGLRHLSGLRNLQSINLSFTLVTDIGLKKI 422
Query: 249 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL----------------------DSC 286
S + SLK LNL +ITD L L GLT L L+L + C
Sbjct: 423 SGLSSLKSLNLDNRQITDTGLASLTGLTGLTHLDLFGARITDSGMSCFRFFKNIQSLEVC 482
Query: 287 G--IGDEGLVNL-------------------------TGLCNLKCLELSDTQVGSSGLRH 319
G I D G+ N+ +GL L L +S+++V +SGL H
Sbjct: 483 GGLITDAGVKNIKDLKALTLLNLSQNGKLTDKTLELISGLTALVSLNVSNSRVSNSGLHH 542
Query: 320 LSGLTNLESINLSFTGISDGSLRKL 344
L L NL S++L ++ + KL
Sbjct: 543 LKPLQNLRSLSLESCRVTASEMDKL 567
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/190 (37%), Positives = 106/190 (55%), Gaps = 26/190 (13%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L +++LS ++V +GL HL NLQS++ +F + ++D GL+ + GLS+L SL+ N
Sbjct: 380 LKNLELSDTEVGSNGLRHLSGLRNLQSINLSFTL-VTDIGLKKISGLSSLKSLNLD-NRQ 437
Query: 119 ITAQGMKAFAGLINLVKLDL---------ERCTR---------IHGGLV------NLKGL 154
IT G+ + GL L LDL C R + GGL+ N+K L
Sbjct: 438 ITDTGLASLTGLTGLTHLDLFGARITDSGMSCFRFFKNIQSLEVCGGLITDAGVKNIKDL 497
Query: 155 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 214
L LN+ +TD ++ +SGLT L SL +S S+V++SG+ +LK LQ L L+LE C
Sbjct: 498 KALTLLNLSQNGKLTDKTLELISGLTALVSLNVSNSRVSNSGLHHLKPLQNLRSLSLESC 557
Query: 215 PVTAACLDSL 224
VTA+ +D L
Sbjct: 558 RVTASEMDKL 567
Score = 38.5 bits (88), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 57/95 (60%), Gaps = 5/95 (5%)
Query: 20 LTEVSLEAFRDC-ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLK 78
+T+ ++ +D AL L L Q + DK +++I+ ++L+S+++S S V++SGL HLK
Sbjct: 486 ITDAGVKNIKDLKALTLLNLSQNGKLTDKTLELISGL-TALVSLNVSNSRVSNSGLHHLK 544
Query: 79 DCSNLQSLDFNFCIQISDGGLEHLR--GLSNLTSL 111
NL+SL C +++ ++ LR L NL S+
Sbjct: 545 PLQNLRSLSLESC-RVTASEMDKLRLVALPNLISV 578
>gi|195647464|gb|ACG43200.1| regulatory subunit [Zea mays]
Length = 581
Score = 490 bits (1261), Expect = e-136, Method: Compositional matrix adjust.
Identities = 265/393 (67%), Positives = 316/393 (80%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
+LPRD+SQQIFNELV CLTE SL AFRDC LQD+CLG YPGV D WM+V+ASQG SLL
Sbjct: 79 LLPRDLSQQIFNELVECGCLTEASLGAFRDCDLQDICLGDYPGVTDAWMEVVASQGQSLL 138
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVDLS SDV DSG LKDCS++Q+L ++C QIS+ GL+ L G SNLTSLS ++ A+T
Sbjct: 139 SVDLSCSDVIDSGFNLLKDCSSMQNLACDYCDQISEHGLKTLSGFSNLTSLSIKKCAAVT 198
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
A+G KAFA L+NLV LDLERC +I+GGL++LKGL KLE LN+++CN ITDSDMK LS LT
Sbjct: 199 AEGAKAFANLVNLVNLDLERCPKINGGLIHLKGLKKLEKLNLRYCNGITDSDMKYLSDLT 258
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
NL+ LQ+S K++ G++YL+GL KL LNLEGC VTA CL+ +S L SL LNL+RC +
Sbjct: 259 NLRELQLSSCKISAFGVSYLRGLHKLGHLNLEGCAVTAVCLEVISELASLVLLNLSRCGI 318
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
D+GCE + LK L+LGFN+ITD CL+HLK L NLE LNLDSC IGDEGL +L GL
Sbjct: 319 CDEGCENLKGLTKLKALSLGFNQITDACLIHLKDLVNLECLNLDSCKIGDEGLFHLKGLI 378
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
LK LELSDT+VGS+GLRHLSGL NL+SINLSFT ++D L+K++GLSSLKSLNLD RQI
Sbjct: 379 QLKNLELSDTEVGSNGLRHLSGLRNLQSINLSFTLVTDIGLKKISGLSSLKSLNLDNRQI 438
Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
TDTGLA+LT LTGLTHLDLFGARITDSG + R
Sbjct: 439 TDTGLASLTGLTGLTHLDLFGARITDSGMSCFR 471
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 108/325 (33%), Positives = 161/325 (49%), Gaps = 52/325 (16%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TDS + +L D +NL+ L + C +IS G+ +LRGL L L+ A+TA ++ +
Sbjct: 246 ITDSDMKYLSDLTNLRELQLSSC-KISAFGVSYLRGLHKLGHLNLE-GCAVTAVCLEVIS 303
Query: 129 GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
L +LV L+L RC G NLKGL KL++L++ + N ITD+ + L L NL+ L +
Sbjct: 304 ELASLVLLNLSRCGICDEGCENLKGLTKLKALSLGF-NQITDACLIHLKDLVNLECLNLD 362
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 248
K+ D G+ +LKGL +L L L V + L LS L +L +NL+ ++D G +K
Sbjct: 363 SCKIGDEGLFHLKGLIQLKNLELSDTEVGSNGLRHLSGLRNLQSINLSFTLVTDIGLKKI 422
Query: 249 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL----------------------DSC 286
S + SLK LNL +ITD L L GLT L L+L + C
Sbjct: 423 SGLSSLKSLNLDNRQITDTGLASLTGLTGLTHLDLFGARITDSGMSCFRFFKNIQSLEVC 482
Query: 287 G--IGDEGLVNL-------------------------TGLCNLKCLELSDTQVGSSGLRH 319
G I D G+ N+ +GL L L +S+++V + GL H
Sbjct: 483 GGLITDAGVKNIKDLKALTLLNLSQNGKLTDKTLELISGLTALVSLNVSNSRVSNLGLHH 542
Query: 320 LSGLTNLESINLSFTGISDGSLRKL 344
L L NL S++L ++ + KL
Sbjct: 543 LKPLQNLRSLSLESCRVTASEMDKL 567
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 94/281 (33%), Positives = 154/281 (54%), Gaps = 6/281 (2%)
Query: 52 IASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSL 111
+ S+ +SL+ ++LS + D G +LK + L++L F QI+D L HL+ L NL L
Sbjct: 301 VISELASLVLLNLSRCGICDEGCENLKGLTKLKALSLGF-NQITDACLIHLKDLVNLECL 359
Query: 112 SFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDS 171
+ + I +G+ GLI L L+L GL +L GL L+S+N+ + +TD
Sbjct: 360 NLD-SCKIGDEGLFHLKGLIQLKNLELSDTEVGSNGLRHLSGLRNLQSINLSF-TLVTDI 417
Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
+K +SGL++LKSL + ++TD+G+A L GL LT L+L G +T + + ++
Sbjct: 418 GLKKISGLSSLKSLNLDNRQITDTGLASLTGLTGLTHLDLFGARITDSGMSCFRFFKNIQ 477
Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN-EITDECLVHLKGLTNLESLNLDSCGIGD 290
L + ++D G + + +L +LNL N ++TD+ L + GLT L SLN+ + + +
Sbjct: 478 SLEVCGGLITDAGVKNIKDLKALTLLNLSQNGKLTDKTLELISGLTALVSLNVSNSRVSN 537
Query: 291 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLS--GLTNLESI 329
GL +L L NL+ L L +V +S + L L NL S+
Sbjct: 538 LGLHHLKPLQNLRSLSLESCRVTASEMDKLRLVALPNLISV 578
>gi|226505324|ref|NP_001147302.1| regulatory subunit [Zea mays]
gi|195609698|gb|ACG26679.1| regulatory subunit [Zea mays]
gi|413937767|gb|AFW72318.1| regulatory subunit isoform 1 [Zea mays]
gi|413937768|gb|AFW72319.1| regulatory subunit isoform 2 [Zea mays]
Length = 582
Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust.
Identities = 264/393 (67%), Positives = 323/393 (82%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
MLPRD+SQQIFNELV S LTE SL+ FRDCALQD+ LG+YPGV D WM+V+ASQ SLL
Sbjct: 80 MLPRDLSQQIFNELVNSNRLTEASLQVFRDCALQDIGLGEYPGVKDAWMEVVASQKQSLL 139
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVD+S S+V DSG+ L+DCS++QSL N+C QIS+ GL L GLSNL+SLSF+R+NA+T
Sbjct: 140 SVDISCSEVADSGIDLLRDCSSMQSLACNYCDQISESGLGVLSGLSNLSSLSFKRSNAVT 199
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
A+GM+AFA L+NL+ LDLE C +IHGGL++LK L KLESLN+++CN I DSD+K L+ LT
Sbjct: 200 AEGMRAFANLVNLLNLDLEGCLKIHGGLIHLKDLTKLESLNMRYCNYIADSDIKYLTDLT 259
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
NLK LQ+SC K+TD G++Y++GLQKLT LNLEGCPVTAACL+++S L SL LNLNRC +
Sbjct: 260 NLKDLQLSCCKITDLGVSYIRGLQKLTHLNLEGCPVTAACLEAISGLSSLVLLNLNRCGI 319
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
DDGCE F + LKVLNLGFN ITD CLVHLK L +LESLNLDSC IGD+GL +L GL
Sbjct: 320 YDDGCENFEGLKRLKVLNLGFNYITDACLVHLKELISLESLNLDSCKIGDDGLSHLKGLV 379
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
L+ LELSDT+VG++GL+HLSGL NL+SINLSFT ++D ++K++ L+SLKS+NLD RQI
Sbjct: 380 LLQSLELSDTEVGNNGLQHLSGLRNLQSINLSFTLVTDIGVKKISVLNSLKSVNLDNRQI 439
Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
TD GLAAL SLT LTHLDLFGA ITD+G R
Sbjct: 440 TDVGLAALISLTRLTHLDLFGACITDNGTNCFR 472
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 100/192 (52%), Gaps = 26/192 (13%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L S++LS ++V ++GL HL NLQS++ +F + ++D G++ + L++L S++ N
Sbjct: 381 LQSLELSDTEVGNNGLQHLSGLRNLQSINLSFTL-VTDIGVKKISVLNSLKSVNLD-NRQ 438
Query: 119 ITAQGMKAFAGLINLVKLDL---------ERCTR---------IHGGLV------NLKGL 154
IT G+ A L L LDL C R + GG V N+K L
Sbjct: 439 ITDVGLAALISLTRLTHLDLFGACITDNGTNCFRYFKNLVSLEVCGGFVTDAGVKNIKDL 498
Query: 155 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 214
L LN+ +TD ++ +SGLT L +L +S S+V+++G+ +L L L L+L+
Sbjct: 499 KALTLLNLSQNANLTDKTLELISGLTALINLNVSNSRVSNAGLKHLNDLHNLRSLSLDST 558
Query: 215 PVTAACLDSLSA 226
VTA + L A
Sbjct: 559 RVTANEMRKLRA 570
>gi|255553315|ref|XP_002517700.1| F-box/LRR-repeat protein, putative [Ricinus communis]
gi|223543332|gb|EEF44864.1| F-box/LRR-repeat protein, putative [Ricinus communis]
Length = 529
Score = 452 bits (1163), Expect = e-124, Method: Compositional matrix adjust.
Identities = 273/394 (69%), Positives = 302/394 (76%), Gaps = 49/394 (12%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
MLPRDISQQIFNELVYS+ L + ++EAFRDCALQDL LG+ PGVND WMDVI+SQG SLL
Sbjct: 76 MLPRDISQQIFNELVYSQRLNDATIEAFRDCALQDLHLGECPGVNDSWMDVISSQGISLL 135
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVDLSGSDVTDS GL +L+ +NL +L+F + I+
Sbjct: 136 SVDLSGSDVTDS-------------------------GLAYLKDCTNLQALNFNYCDQIS 170
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
G L N+ L+KLESLNIKWCNCITD+DMK LSGL
Sbjct: 171 DPG------------------------LSNISDLLKLESLNIKWCNCITDADMKYLSGLV 206
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
LK LQISCSKVTD GI+YLKGL KL LLNLEGCPVT ACLDSLSAL +L YLNLNRC L
Sbjct: 207 KLKGLQISCSKVTDVGISYLKGLHKLNLLNLEGCPVTVACLDSLSALAALLYLNLNRCHL 266
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
SDDGCE FSK+G LKVLNLGFN+I+D CLVHLKGLTNLESLNLDSC I DEGL NLTGL
Sbjct: 267 SDDGCEAFSKLGRLKVLNLGFNDISDACLVHLKGLTNLESLNLDSCRIDDEGLANLTGLR 326
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
+LKCL LSDT+VGSSGLRHLSGLTNLESINLSFT I+DG +RKL+GLSSLKSLNLDARQI
Sbjct: 327 HLKCLVLSDTEVGSSGLRHLSGLTNLESINLSFTMITDGGIRKLSGLSSLKSLNLDARQI 386
Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRS 394
TD+GLAALT+LTGLTHLDLFGARITDSG YLR+
Sbjct: 387 TDSGLAALTNLTGLTHLDLFGARITDSGTHYLRN 420
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 94/188 (50%), Gaps = 28/188 (14%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
LS ++V SGL HL +NL+S++ +F + I+DGG+ L GLS+L SL+ IT G
Sbjct: 333 LSDTEVGSSGLRHLSGLTNLESINLSFTM-ITDGGIRKLSGLSSLKSLNLDARQ-ITDSG 390
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI--------------------- 162
+ A L L LDL G L+ L+SL I
Sbjct: 391 LAALTNLTGLTHLDLFGARITDSGTHYLRNFKNLQSLEICGGGLTDAGIRNIKDLSSLSL 450
Query: 163 ----KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
+ CN +TD ++ +SGLT L SL +S S++T +G+ +LK L+ L L LE C VTA
Sbjct: 451 LNLSQNCN-LTDKSLELISGLTGLVSLNVSNSRITSAGLQHLKPLKNLKSLTLESCKVTA 509
Query: 219 ACLDSLSA 226
+ L +
Sbjct: 510 TDIKKLQS 517
>gi|168057635|ref|XP_001780819.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162667754|gb|EDQ54376.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 564
Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust.
Identities = 225/393 (57%), Positives = 292/393 (74%), Gaps = 1/393 (0%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
+PRD+ QQ+ N+LV + L+ V+LE F DCALQD+ L YPGV D W+D+I SQG SLL+
Sbjct: 62 VPRDLIQQVLNDLVRKQLLSPVTLELFSDCALQDVLLADYPGVEDFWLDIIGSQGESLLA 121
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
+D+SGS VTD GL L+ C+NLQ+L N C ISD GL L GLSNLT+LS R +N ITA
Sbjct: 122 LDISGSPVTDDGLACLQSCTNLQTLSLNSCDHISDEGLSVLSGLSNLTTLSLRSSNLITA 181
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
GM+ F L++L LDLERC IHGG V L+GL LE LN+ WC + ++D+ L+G+ N
Sbjct: 182 AGMRNFTNLVSLKNLDLERCPLIHGGFVYLRGLTTLEKLNVGWCIGVRNADITHLAGIVN 241
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
LK LQIS SKV DSG+A LKG+ L L++EGCP+TA + +++ L +L +LN+N C L
Sbjct: 242 LKELQISRSKVNDSGVASLKGMTNLRSLSMEGCPITAQSMKTIAGLTTLCHLNINSCYLP 301
Query: 242 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN 301
D GC+K + +L+ LNLG+NE+TD +V LKGLTNLE LNLDSC +GDEG+ ++ GL N
Sbjct: 302 DSGCQKLEGLINLRTLNLGYNELTDSGMVFLKGLTNLERLNLDSCKVGDEGIKHVKGLLN 361
Query: 302 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFT-GISDGSLRKLAGLSSLKSLNLDARQI 360
L+ L+LSD++VG+ GLR LSGL LE +NLSFT G++D L +A ++SL SLNLD++QI
Sbjct: 362 LRMLDLSDSEVGNVGLRFLSGLKKLEILNLSFTGGVTDIGLSTIATITSLTSLNLDSKQI 421
Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
TDTGLAALT LTGL +LDLFGA+ITD G A LR
Sbjct: 422 TDTGLAALTGLTGLKNLDLFGAKITDYGMARLR 454
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 88/266 (33%), Positives = 140/266 (52%), Gaps = 5/266 (1%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+ DSG L+ NL++L+ + +++D G+ L+GL+NL L+ + + +G+K
Sbjct: 300 LPDSGCQKLEGLINLRTLNLGYN-ELTDSGMVFLKGLTNLERLNLD-SCKVGDEGIKHVK 357
Query: 129 GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
GL+NL LDL + GL L GL KLE LN+ + +TD + ++ +T+L SL +
Sbjct: 358 GLLNLRMLDLSDSEVGNVGLRFLSGLKKLEILNLSFTGGVTDIGLSTIATITSLTSLNLD 417
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 248
++TD+G+A L GL L L+L G +T + L +L L L ++D G
Sbjct: 418 SKQITDTGLAALTGLTGLKNLDLFGAKITDYGMARLRHFKNLQSLELCGGGITDVGVSSI 477
Query: 249 SKIGSLKVLNLGFN-EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 307
+ L LNL N +TD L +L G+ NL SLN+ + + + GL +L L L L L
Sbjct: 478 KDLTLLTSLNLSHNLRLTDRSLQYLSGMENLVSLNVANSKVTNAGLQHLRPLTKLTSLAL 537
Query: 308 SDTQVGSSGLRHL--SGLTNLESINL 331
+V + + HL + L NL I+L
Sbjct: 538 QGCKVTRTAVDHLKATSLPNLSVIHL 563
>gi|302796665|ref|XP_002980094.1| hypothetical protein SELMODRAFT_419616 [Selaginella moellendorffii]
gi|302822036|ref|XP_002992678.1| hypothetical protein SELMODRAFT_162512 [Selaginella moellendorffii]
gi|300139524|gb|EFJ06263.1| hypothetical protein SELMODRAFT_162512 [Selaginella moellendorffii]
gi|300152321|gb|EFJ18964.1| hypothetical protein SELMODRAFT_419616 [Selaginella moellendorffii]
Length = 578
Score = 433 bits (1114), Expect = e-119, Method: Compositional matrix adjust.
Identities = 225/392 (57%), Positives = 285/392 (72%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
LPRD++Q+I NELV ++ L+ +AF DCA+QD+ LG YPGV+D WM+VI SQ LL+
Sbjct: 77 LPRDLTQKILNELVQTQALSRELFQAFEDCAIQDIYLGYYPGVDDSWMEVIGSQKFCLLA 136
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
VD SGS VTD G+ L+ C N++ + N C ISD L + G +NLTSLSF++N IT
Sbjct: 137 VDFSGSMVTDEGVQCLQICENVEIICMNECKYISDISLSYFTGFTNLTSLSFQKNKLITP 196
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
GM+ AGL NL LDLERC +IH GLV +KGL KLE LN+ WCNCI SDMK LSGLTN
Sbjct: 197 AGMRHLAGLPNLKHLDLERCPKIHDGLVYIKGLTKLEKLNLGWCNCIRSSDMKQLSGLTN 256
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
L LQIS SKV D GI +LK L+KL +LN+EGCPVT AC+D+++ L SL LNL C +S
Sbjct: 257 LLELQISRSKVKDFGITFLKDLKKLEVLNMEGCPVTFACMDTIAGLTSLTTLNLKSCYIS 316
Query: 242 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN 301
D GC K +G+LK LNL + ++D +V+LK L +L+ LNLDSC IGD+G+ N L N
Sbjct: 317 DFGCRKLEGLGNLKNLNLSYTNVSDAGMVYLKNLKSLQFLNLDSCKIGDQGVQNFKNLVN 376
Query: 302 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 361
LK L+LSD+ +G+ L L+GL+ LES+N+S T ++D L K++GL+SLKSLN+D+RQIT
Sbjct: 377 LKSLDLSDSLIGNHALNFLTGLSKLESLNISSTMVTDMGLHKISGLTSLKSLNIDSRQIT 436
Query: 362 DTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
DTGL ALTSLT LTHLDLF ARITD G LR
Sbjct: 437 DTGLMALTSLTNLTHLDLFSARITDYGIGSLR 468
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 65/208 (31%), Positives = 103/208 (49%), Gaps = 26/208 (12%)
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 247
C ++D ++Y G LT L+ + +T A + L+ L +L +L+L RC DG
Sbjct: 166 CKYISDISLSYFTGFTNLTSLSFQKNKLITPAGMRHLAGLPNLKHLDLERCPKIHDG--- 222
Query: 248 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLE 306
LV++KGLT LE LNL C I + L+GL NL L+
Sbjct: 223 ---------------------LVYIKGLTKLEKLNLGWCNCIRSSDMKQLSGLTNLLELQ 261
Query: 307 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 366
+S ++V G+ L L LE +N+ ++ + +AGL+SL +LNL + I+D G
Sbjct: 262 ISRSKVKDFGITFLKDLKKLEVLNMEGCPVTFACMDTIAGLTSLTTLNLKSCYISDFGCR 321
Query: 367 ALTSLTGLTHLDLFGARITDSGAAYLRS 394
L L L +L+L ++D+G YL++
Sbjct: 322 KLEGLGNLKNLNLSYTNVSDAGMVYLKN 349
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 91/170 (53%), Gaps = 2/170 (1%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
S L S+++S + VTD GL + ++L+SL+ + QI+D GL L L+NLT L +
Sbjct: 399 SKLESLNISSTMVTDMGLHKISGLTSLKSLNID-SRQITDTGLMALTSLTNLTHLDLF-S 456
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
IT G+ + L L++ G+ +LK L L LN+ +TD ++ L
Sbjct: 457 ARITDYGIGSLRHFKKLQSLEVCGGGITDVGVKSLKDLTDLTYLNLSQNGQLTDQALEAL 516
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 226
SGLT L SL + S VT++G+ +L L+ LT L L+ C VT + L A
Sbjct: 517 SGLTKLVSLNVGNSSVTNAGLQHLLPLKNLTSLALQSCKVTLWAIQKLQA 566
>gi|168012567|ref|XP_001758973.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162689672|gb|EDQ76042.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 584
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 225/394 (57%), Positives = 286/394 (72%), Gaps = 2/394 (0%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
+PRD+ Q + +ELV + L+ +LE F DC+LQD+ L YPGV D W+ VI SQG SLL+
Sbjct: 81 VPRDLIQLVLDELVRRQLLSPTTLELFSDCSLQDVLLPDYPGVEDSWLQVIGSQGESLLA 140
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
+D+S S VTD GL L+ C+NLQSL N C I+D GL L GLSNLT+LS R NN ITA
Sbjct: 141 LDISSSTVTDEGLSFLESCTNLQSLILNACESIADEGLTSLSGLSNLTTLSLRSNNMITA 200
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
GM+ F L++L LDL+RC I GG V LKGL LE LN+ WC + +SD+K LSGL N
Sbjct: 201 AGMQNFTHLVSLKNLDLQRCPSIQGGFVYLKGLTTLEKLNVGWCIGVRNSDIKHLSGLVN 260
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQL 240
LK LQIS SKV+DSG+A L GL KL L++EGC VT+ ++S+ L +++LN+N C L
Sbjct: 261 LKELQISRSKVSDSGLASLTGLTKLRSLSMEGCQAVTSKGMESIGGLTGVWHLNVNSCFL 320
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
D G +K + +L+ LN+G+N +++ + LKGLTNLE LNLDSC IGD G+ N+ GL
Sbjct: 321 HDSGFQKLEGLINLRTLNMGYNNVSNSGMGFLKGLTNLERLNLDSCKIGDHGIENVKGLV 380
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT-GISDGSLRKLAGLSSLKSLNLDARQ 359
NLK L+LSDT++ S+GLR L+GL NLES+NLSFT GI+D LR +A ++SL SLNLD++Q
Sbjct: 381 NLKMLDLSDTEIESAGLRFLTGLKNLESLNLSFTGGIADSGLRTIATITSLTSLNLDSKQ 440
Query: 360 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
ITDTGLAALT LTGL LDLFGARITD G A LR
Sbjct: 441 ITDTGLAALTGLTGLKTLDLFGARITDYGMACLR 474
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 87/253 (34%), Positives = 130/253 (51%), Gaps = 3/253 (1%)
Query: 71 DSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL 130
DSG L+ NL++L+ + +S+ G+ L+GL+NL L+ + I G++ GL
Sbjct: 322 DSGFQKLEGLINLRTLNMGYN-NVSNSGMGFLKGLTNLERLNLD-SCKIGDHGIENVKGL 379
Query: 131 INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS 190
+NL LDL GL L GL LESLN+ + I DS ++ ++ +T+L SL +
Sbjct: 380 VNLKMLDLSDTEIESAGLRFLTGLKNLESLNLSFTGGIADSGLRTIATITSLTSLNLDSK 439
Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 250
++TD+G+A L GL L L+L G +T + L L L L ++D G
Sbjct: 440 QITDTGLAALTGLTGLKTLDLFGARITDYGMACLRHFKKLQTLELCGGGITDAGVRSIKD 499
Query: 251 IGSLKVLNLGFN-EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 309
+ SL LNL N +TD L +L G+ NL SLNL + + + GL +L L NL L L D
Sbjct: 500 LTSLTSLNLSQNMRLTDNSLQYLSGMKNLVSLNLANSRVTNAGLQHLRPLTNLTSLALQD 559
Query: 310 TQVGSSGLRHLSG 322
+V + L
Sbjct: 560 CKVTLPAVERLQA 572
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 64/110 (58%), Gaps = 3/110 (2%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC-IQISDGGLEHLRGLSNLTSLSFRR 115
+ L ++DL G+ +TD G+ L+ LQ+L+ C I+D G+ ++ L++LTSL+ +
Sbjct: 453 TGLKTLDLFGARITDYGMACLRHFKKLQTLE--LCGGGITDAGVRSIKDLTSLTSLNLSQ 510
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC 165
N +T ++ +G+ NLV L+L + GL +L+ L L SL ++ C
Sbjct: 511 NMRLTDNSLQYLSGMKNLVSLNLANSRVTNAGLQHLRPLTNLTSLALQDC 560
>gi|70663921|emb|CAE02935.3| OSJNBa0014K14.7 [Oryza sativa Japonica Group]
Length = 557
Score = 406 bits (1043), Expect = e-110, Method: Compositional matrix adjust.
Identities = 223/395 (56%), Positives = 275/395 (69%), Gaps = 28/395 (7%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
+LPRD+SQQ+FNELV LTE L AFRDCALQD+CL YPGV D WM+V ASQG SLL
Sbjct: 79 LLPRDLSQQVFNELVEWNILTEELLGAFRDCALQDICLADYPGVRDAWMEVAASQGQSLL 138
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVD+S SDVTD GL LKDC NLQSL N+C QIS+ GL+ L GLSN+TSLSF++ +A+T
Sbjct: 139 SVDISCSDVTDGGLNQLKDCINLQSLSCNYCDQISEHGLKTLSGLSNVTSLSFKKCSAVT 198
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
A+G KAFA ++NL LDLERC +IHGGLV+LKGL KLE LN+++CN ITDSDMK LS LT
Sbjct: 199 AEGAKAFANMVNLGSLDLERCPKIHGGLVHLKGLRKLEKLNLRYCNGITDSDMKHLSDLT 258
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
NL+ LQ+SC K++D G++YL+GL KL LNLEGC VTAACL+ +S L SL LNL+RC +
Sbjct: 259 NLRELQLSCCKISDLGVSYLRGLSKLAHLNLEGCAVTAACLEVISGLASLVLLNLSRCGV 318
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
D+GCE + LKVLNLGFN ITD CLVHLK L NLE LNLDSC IGDEGL +L
Sbjct: 319 YDEGCEHLEGLVKLKVLNLGFNYITDACLVHLKELINLECLNLDSCKIGDEGLAHLK--- 375
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
+ H L++ N + + + +KL + + + +
Sbjct: 376 ----------------VFH----KTLKAENHTISLMQTSETKKLG---TFRHRSWEQWTS 412
Query: 361 TDTGLAALTS--LTGLTHLDLFGARITDSGAAYLR 393
+ + L+S LTGLTHLDLFGARITD+G L+
Sbjct: 413 SSLWMVFLSSQGLTGLTHLDLFGARITDAGTNCLK 447
Score = 104 bits (259), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 101/312 (32%), Positives = 165/312 (52%), Gaps = 30/312 (9%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TDS + HL D +NL+ L + C +ISD G+ +LRGLS L L+ A+TA ++ +
Sbjct: 246 ITDSDMKHLSDLTNLRELQLS-CCKISDLGVSYLRGLSKLAHLNLE-GCAVTAACLEVIS 303
Query: 129 GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
GL +LV L+L RC G +L+GL+KL+ LN+ + N ITD+ + L L NL+ L +
Sbjct: 304 GLASLVLLNLSRCGVYDEGCEHLEGLVKLKVLNLGF-NYITDACLVHLKELINLECLNLD 362
Query: 189 CSKVTDSGIAYLKGLQK--------LTLL--------------NLEGCPVTAACLDSLSA 226
K+ D G+A+LK K ++L+ + E ++ + LS+
Sbjct: 363 SCKIGDEGLAHLKVFHKTLKAENHTISLMQTSETKKLGTFRHRSWEQWTSSSLWMVFLSS 422
Query: 227 LG--SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284
G L +L+L +++D G +L+ L + ITD + ++K L L LNL
Sbjct: 423 QGLTGLTHLDLFGARITDAGTNCLKYFKNLQSLEVCGGLITDAGVKNIKDLKALTLLNLS 482
Query: 285 SCG-IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
G + D+ L ++ L L L +S+++V +SGL HL L NL S++L ++ ++K
Sbjct: 483 QNGNLTDKSLELISRLTALVSLNVSNSRVSNSGLHHLKPLQNLRSLSLESCKVTAIEIKK 542
Query: 344 --LAGLSSLKSL 353
LA L +L S+
Sbjct: 543 LQLAALPNLVSV 554
>gi|414586494|tpg|DAA37065.1| TPA: hypothetical protein ZEAMMB73_067914 [Zea mays]
Length = 400
Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust.
Identities = 213/322 (66%), Positives = 255/322 (79%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
+LPRD+SQQIFNELV CLTE SL AFRDC LQD+CLG YPGV D WM+V+ASQG SLL
Sbjct: 79 LLPRDLSQQIFNELVECGCLTEASLGAFRDCDLQDICLGDYPGVTDAWMEVVASQGQSLL 138
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVDLS SDVTDSG LKDCS++QSL ++C QIS+ GL+ L G SNLTSLS ++ A+T
Sbjct: 139 SVDLSCSDVTDSGFNLLKDCSSMQSLACDYCDQISEHGLKTLSGFSNLTSLSIKKCAAVT 198
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
A+G KAFA L+NLV LDLERC +I+GGL++LKGL KLE LN+++CN ITDSDMK LS LT
Sbjct: 199 AEGAKAFANLVNLVNLDLERCPKINGGLIHLKGLKKLEKLNLRYCNGITDSDMKYLSDLT 258
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
NL+ LQ+S K++ G++YL+GL KL LNLEGC VTA CL+ +S L SL LNL+RC +
Sbjct: 259 NLRELQLSSCKISAFGVSYLRGLHKLGHLNLEGCAVTAVCLEVISELASLVLLNLSRCGI 318
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
D+GCE + LK L+LGFN+ITD CL+HLK L NLE LNLDSC IGDEGL +L GL
Sbjct: 319 CDEGCENLKGLTKLKALSLGFNQITDACLIHLKDLVNLECLNLDSCKIGDEGLFHLKGLI 378
Query: 301 NLKCLELSDTQVGSSGLRHLSG 322
LK LELSDT+VGS+GLRHLSG
Sbjct: 379 QLKNLELSDTEVGSNGLRHLSG 400
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 87/263 (33%), Positives = 132/263 (50%), Gaps = 2/263 (0%)
Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CS 190
+L+ +DL G LK ++SL +C+ I++ +K LSG +NL SL I C+
Sbjct: 136 SLLSVDLSCSDVTDSGFNLLKDCSSMQSLACDYCDQISEHGLKTLSGFSNLTSLSIKKCA 195
Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFS 249
VT G L L L+LE CP L L L L LNL C ++D + S
Sbjct: 196 AVTAEGAKAFANLVNLVNLDLERCPKINGGLIHLKGLKKLEKLNLRYCNGITDSDMKYLS 255
Query: 250 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 309
+ +L+ L L +I+ + +L+GL L LNL+ C + L ++ L +L L LS
Sbjct: 256 DLTNLRELQLSSCKISAFGVSYLRGLHKLGHLNLEGCAVTAVCLEVISELASLVLLNLSR 315
Query: 310 TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 369
+ G +L GLT L++++L F I+D L L L +L+ LNLD+ +I D GL L
Sbjct: 316 CGICDEGCENLKGLTKLKALSLGFNQITDACLIHLKDLVNLECLNLDSCKIGDEGLFHLK 375
Query: 370 SLTGLTHLDLFGARITDSGAAYL 392
L L +L+L + +G +L
Sbjct: 376 GLIQLKNLELSDTEVGSNGLRHL 398
>gi|413937766|gb|AFW72317.1| hypothetical protein ZEAMMB73_434085 [Zea mays]
Length = 403
Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust.
Identities = 218/324 (67%), Positives = 268/324 (82%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
MLPRD+SQQIFNELV S LTE SL+ FRDCALQD+ LG+YPGV D WM+V+ASQ SLL
Sbjct: 80 MLPRDLSQQIFNELVNSNRLTEASLQVFRDCALQDIGLGEYPGVKDAWMEVVASQKQSLL 139
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVD+S S+V DSG+ L+DCS++QSL N+C QIS+ GL L GLSNL+SLSF+R+NA+T
Sbjct: 140 SVDISCSEVADSGIDLLRDCSSMQSLACNYCDQISESGLGVLSGLSNLSSLSFKRSNAVT 199
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
A+GM+AFA L+NL+ LDLE C +IHGGL++LK L KLESLN+++CN I DSD+K L+ LT
Sbjct: 200 AEGMRAFANLVNLLNLDLEGCLKIHGGLIHLKDLTKLESLNMRYCNYIADSDIKYLTDLT 259
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
NLK LQ+SC K+TD G++Y++GLQKLT LNLEGCPVTAACL+++S L SL LNLNRC +
Sbjct: 260 NLKDLQLSCCKITDLGVSYIRGLQKLTHLNLEGCPVTAACLEAISGLSSLVLLNLNRCGI 319
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
DDGCE F + LKVLNLGFN ITD CLVHLK L +LESLNLDSC IGD+GL +L GL
Sbjct: 320 YDDGCENFEGLKRLKVLNLGFNYITDACLVHLKELISLESLNLDSCKIGDDGLSHLKGLV 379
Query: 301 NLKCLELSDTQVGSSGLRHLSGLT 324
L+ LELSDT+VG++GL+HLSGL+
Sbjct: 380 LLQSLELSDTEVGNNGLQHLSGLS 403
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 76/240 (31%), Positives = 107/240 (44%), Gaps = 27/240 (11%)
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC-------------------------- 214
+L S+ ISCS+V DSGI L+ + L C
Sbjct: 137 SLLSVDISCSEVADSGIDLLRDCSSMQSLACNYCDQISESGLGVLSGLSNLSSLSFKRSN 196
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLK 273
VTA + + + L +L L+L C G + L+ LN+ + N I D + +L
Sbjct: 197 AVTAEGMRAFANLVNLLNLDLEGCLKIHGGLIHLKDLTKLESLNMRYCNYIADSDIKYLT 256
Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333
LTNL+ L L C I D G+ + GL L L L V ++ L +SGL++L +NL+
Sbjct: 257 DLTNLKDLQLSCCKITDLGVSYIRGLQKLTHLNLEGCPVTAACLEAISGLSSLVLLNLNR 316
Query: 334 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
GI D GL LK LNL ITD L L L L L+L +I D G ++L+
Sbjct: 317 CGIYDDGCENFEGLKRLKVLNLGFNYITDACLVHLKELISLESLNLDSCKIGDDGLSHLK 376
>gi|414586492|tpg|DAA37063.1| TPA: hypothetical protein ZEAMMB73_067914 [Zea mays]
Length = 356
Score = 328 bits (842), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 176/273 (64%), Positives = 215/273 (78%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
+LPRD+SQQIFNELV CLTE SL AFRDC LQD+CLG YPGV D WM+V+ASQG SLL
Sbjct: 79 LLPRDLSQQIFNELVECGCLTEASLGAFRDCDLQDICLGDYPGVTDAWMEVVASQGQSLL 138
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVDLS SDVTDSG LKDCS++QSL ++C QIS+ GL+ L G SNLTSLS ++ A+T
Sbjct: 139 SVDLSCSDVTDSGFNLLKDCSSMQSLACDYCDQISEHGLKTLSGFSNLTSLSIKKCAAVT 198
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
A+G KAFA L+NLV LDLERC +I+GGL++LKGL KLE LN+++CN ITDSDMK LS LT
Sbjct: 199 AEGAKAFANLVNLVNLDLERCPKINGGLIHLKGLKKLEKLNLRYCNGITDSDMKYLSDLT 258
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
NL+ LQ+S K++ G++YL+GL KL LNLEGC VTA CL+ +S L SL LNL+RC +
Sbjct: 259 NLRELQLSSCKISAFGVSYLRGLHKLGHLNLEGCAVTAVCLEVISELASLVLLNLSRCGI 318
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
D+GCE + LK L+LGFN+ITD CL+HLK
Sbjct: 319 CDEGCENLKGLTKLKALSLGFNQITDACLIHLK 351
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 83/238 (34%), Positives = 106/238 (44%), Gaps = 24/238 (10%)
Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CS 190
+L+ +DL G LK ++SL +C+ I++ +K LSG +NL SL I C+
Sbjct: 136 SLLSVDLSCSDVTDSGFNLLKDCSSMQSLACDYCDQISEHGLKTLSGFSNLTSLSIKKCA 195
Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 250
VT G L L L+LE CP L L L L LNL C
Sbjct: 196 AVTAEGAKAFANLVNLVNLDLERCPKINGGLIHLKGLKKLEKLNLRYC------------ 243
Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 310
N ITD + +L LTNL L L SC I G+ L GL L L L
Sbjct: 244 -----------NGITDSDMKYLSDLTNLRELQLSSCKISAFGVSYLRGLHKLGHLNLEGC 292
Query: 311 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 368
V + L +S L +L +NLS GI D L GL+ LK+L+L QITD L L
Sbjct: 293 AVTAVCLEVISELASLVLLNLSRCGICDEGCENLKGLTKLKALSLGFNQITDACLIHL 350
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 77/230 (33%), Positives = 123/230 (53%), Gaps = 4/230 (1%)
Query: 168 ITDSDMKPLSGL-TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLS 225
+TD+ M+ ++ +L S+ +SCS VTDSG LK + L + C ++ L +LS
Sbjct: 122 VTDAWMEVVASQGQSLLSVDLSCSDVTDSGFNLLKDCSSMQSLACDYCDQISEHGLKTLS 181
Query: 226 ALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284
+L L++ +C ++ +G + F+ + +L L+L + L+HLKGL LE LNL
Sbjct: 182 GFSNLTSLSIKKCAAVTAEGAKAFANLVNLVNLDLERCPKINGGLIHLKGLKKLEKLNLR 241
Query: 285 SC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
C GI D + L+ L NL+ L+LS ++ + G+ +L GL L +NL ++ L
Sbjct: 242 YCNGITDSDMKYLSDLTNLRELQLSSCKISAFGVSYLRGLHKLGHLNLEGCAVTAVCLEV 301
Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
++ L+SL LNL I D G L LT L L L +ITD+ +L+
Sbjct: 302 ISELASLVLLNLSRCGICDEGCENLKGLTKLKALSLGFNQITDACLIHLK 351
>gi|14423508|gb|AAK62436.1|AF386991_1 Unknown protein [Arabidopsis thaliana]
gi|20148357|gb|AAM10069.1| unknown protein [Arabidopsis thaliana]
Length = 332
Score = 300 bits (767), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 167/223 (74%), Positives = 193/223 (86%), Gaps = 1/223 (0%)
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLF 231
M+PLS LTNL+SLQI CSK+TD GI+YLKGL KL LLNLEGC VTAACLD+L+AL L
Sbjct: 1 MEPLSVLTNLRSLQICCSKITDIGISYLKGLNKLNLLNLEGCRHVTAACLDTLTALAGLM 60
Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
YLNLNRC SD GCEKFS + +LK+LNLG N IT+ CLVHLKGLT LESLNLDSC IGDE
Sbjct: 61 YLNLNRCNFSDSGCEKFSDLINLKILNLGMNNITNSCLVHLKGLTKLESLNLDSCRIGDE 120
Query: 292 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 351
GLV+L+G+ LK LELSDT+VGS+GLRHLSGL+NLESINLSFT ++D LRKL+GL+SL+
Sbjct: 121 GLVHLSGMLELKSLELSDTEVGSNGLRHLSGLSNLESINLSFTVVTDSGLRKLSGLTSLR 180
Query: 352 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRS 394
+LNLDAR +TD GL+ALTSLTGLTHLDLFGARITDSG +LR+
Sbjct: 181 TLNLDARHVTDAGLSALTSLTGLTHLDLFGARITDSGTNHLRN 223
Score = 100 bits (250), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 165/302 (54%), Gaps = 3/302 (0%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L S+ + S +TD G+ +LK + L L+ C ++ L+ L L+ L L+ R
Sbjct: 8 TNLRSLQICCSKITDIGISYLKGLNKLNLLNLEGCRHVTAACLDTLTALAGLMYLNLNRC 67
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N + G + F+ LINL L+L + LV+LKGL KLESLN+ C I D + L
Sbjct: 68 N-FSDSGCEKFSDLINLKILNLGMNNITNSCLVHLKGLTKLESLNLDSCR-IGDEGLVHL 125
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
SG+ LKSL++S ++V +G+ +L GL L +NL VT + L LS L SL LNL+
Sbjct: 126 SGMLELKSLELSDTEVGSNGLRHLSGLSNLESINLSFTVVTDSGLRKLSGLTSLRTLNLD 185
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
++D G + + L L+L ITD HL+ L L+SL + G+ D G+ N+
Sbjct: 186 ARHVTDAGLSALTSLTGLTHLDLFGARITDSGTNHLRNLKKLQSLEICGGGLTDTGVKNI 245
Query: 297 TGLCNLKCLEL-SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355
L +L L L ++ + L +SGLT L S+N+S + +S LR L L +L+SL L
Sbjct: 246 KDLSSLTLLNLSQNSNLTDKTLELISGLTGLVSLNVSNSRVSSSGLRHLKPLKNLRSLTL 305
Query: 356 DA 357
++
Sbjct: 306 ES 307
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 94/306 (30%), Positives = 155/306 (50%), Gaps = 3/306 (0%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
+NL+SL C +I+D G+ +L+GL+ L L+ +TA + L L+ L+L R
Sbjct: 8 TNLRSLQI-CCSKITDIGISYLKGLNKLNLLNLEGCRHVTAACLDTLTALAGLMYLNLNR 66
Query: 141 CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL 200
C G L+ L+ LN+ N IT+S + L GLT L+SL + ++ D G+ +L
Sbjct: 67 CNFSDSGCEKFSDLINLKILNLGMNN-ITNSCLVHLKGLTKLESLNLDSCRIGDEGLVHL 125
Query: 201 KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG 260
G+ +L L L V + L LS L +L +NL+ ++D G K S + SL+ LNL
Sbjct: 126 SGMLELKSLELSDTEVGSNGLRHLSGLSNLESINLSFTVVTDSGLRKLSGLTSLRTLNLD 185
Query: 261 FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 320
+TD L L LT L L+L I D G +L L L+ LE+ + +G++++
Sbjct: 186 ARHVTDAGLSALTSLTGLTHLDLFGARITDSGTNHLRNLKKLQSLEICGGGLTDTGVKNI 245
Query: 321 S-GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
+ + ++D +L ++GL+ L SLN+ +++ +GL L L L L L
Sbjct: 246 KDLSSLTLLNLSQNSNLTDKTLELISGLTGLVSLNVSNSRVSSSGLRHLKPLKNLRSLTL 305
Query: 380 FGARIT 385
+++
Sbjct: 306 ESCKLS 311
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 101/192 (52%), Gaps = 26/192 (13%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L S++LS ++V +GL HL SNL+S++ +F + ++D GL L GL++L +L+ +
Sbjct: 131 LKSLELSDTEVGSNGLRHLSGLSNLESINLSFTV-VTDSGLRKLSGLTSLRTLNLDARH- 188
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL-------------NIK-- 163
+T G+ A L L LDL G +L+ L KL+SL NIK
Sbjct: 189 VTDAGLSALTSLTGLTHLDLFGARITDSGTNHLRNLKKLQSLEICGGGLTDTGVKNIKDL 248
Query: 164 ---------WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 214
+ +TD ++ +SGLT L SL +S S+V+ SG+ +LK L+ L L LE C
Sbjct: 249 SSLTLLNLSQNSNLTDKTLELISGLTGLVSLNVSNSRVSSSGLRHLKPLKNLRSLTLESC 308
Query: 215 PVTAACLDSLSA 226
++A + L A
Sbjct: 309 KLSANDIRKLQA 320
>gi|217074604|gb|ACJ85662.1| unknown [Medicago truncatula]
Length = 331
Score = 277 bits (708), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 154/222 (69%), Positives = 180/222 (81%)
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
MK +SG NLK LQIS S +TD GI+YL+GLQKL+ LN+EGC +TAAC + +SAL +L
Sbjct: 1 MKAISGFINLKELQISNSSITDLGISYLRGLQKLSTLNVEGCSITAACFEYISALAALAC 60
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
LNLNRC LSDDG EKFS + LK L+L FN+ITD CLVHLKGLT LE LNLDSC IGDEG
Sbjct: 61 LNLNRCGLSDDGFEKFSGLTGLKRLSLAFNKITDACLVHLKGLTKLEYLNLDSCQIGDEG 120
Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
LVNLTGL LK L LSDT+VG+SG+R++SGL LE +NLSFT ++D L++L GL++LKS
Sbjct: 121 LVNLTGLTLLKSLVLSDTEVGNSGIRYISGLNKLEDLNLSFTSVTDNGLKRLLGLTNLKS 180
Query: 353 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRS 394
LNLDARQITD GLA LTSL+GL LDLFGARITDSG YLRS
Sbjct: 181 LNLDARQITDAGLANLTSLSGLITLDLFGARITDSGTTYLRS 222
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 99/294 (33%), Positives = 156/294 (53%), Gaps = 24/294 (8%)
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNC---------------- 167
MKA +G INL +L + + G+ L+GL KL +LN++ C+
Sbjct: 1 MKAISGFINLKELQISNSSITDLGISYLRGLQKLSTLNVEGCSITAACFEYISALAALAC 60
Query: 168 -------ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 220
++D + SGLT LK L ++ +K+TD+ + +LKGL KL LNL+ C +
Sbjct: 61 LNLNRCGLSDDGFEKFSGLTGLKRLSLAFNKITDACLVHLKGLTKLEYLNLDSCQIGDEG 120
Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 280
L +L+ L L L L+ ++ + G S + L+ LNL F +TD L L GLTNL+S
Sbjct: 121 LVNLTGLTLLKSLVLSDTEVGNSGIRYISGLNKLEDLNLSFTSVTDNGLKRLLGLTNLKS 180
Query: 281 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 340
LNLD+ I D GL NLT L L L+L ++ SG +L NL+S+ + ++D
Sbjct: 181 LNLDARQITDAGLANLTSLSGLITLDLFGARITDSGTTYLRSFKNLQSLEICGGLLTDAG 240
Query: 341 LRKLAGLSSLKSLNLDAR-QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
++ + + SL LNL ++TD L ++ +T L L++ +R+T+ G YL+
Sbjct: 241 VKNIREIVSLTQLNLSQNCKLTDKTLELISGMTALRSLNVSNSRVTNEGLRYLK 294
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 107/316 (33%), Positives = 170/316 (53%), Gaps = 8/316 (2%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
+L + +S S +TD G+ +L+ L +L+ C I+ E++ L+ L L+ R
Sbjct: 9 NLKELQISNSSITDLGISYLRGLQKLSTLNVEGC-SITAACFEYISALAALACLNLNRC- 66
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
++ G + F+GL L +L L LV+LKGL KLE LN+ C I D + L+
Sbjct: 67 GLSDDGFEKFSGLTGLKRLSLAFNKITDACLVHLKGLTKLEYLNLDSCQ-IGDEGLVNLT 125
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
GLT LKSL +S ++V +SGI Y+ GL KL LNL VT L L L +L LNL+
Sbjct: 126 GLTLLKSLVLSDTEVGNSGIRYISGLNKLEDLNLSFTSVTDNGLKRLLGLTNLKSLNLDA 185
Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG--IGDEGLVN 295
Q++D G + + L L+L ITD +L+ NL+SL + CG + D G+ N
Sbjct: 186 RQITDAGLANLTSLSGLITLDLFGARITDSGTTYLRSFKNLQSLEI--CGGLLTDAGVKN 243
Query: 296 LTGLCNLKCLELSDT-QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 354
+ + +L L LS ++ L +SG+T L S+N+S + +++ LR L L +L++L+
Sbjct: 244 IREIVSLTQLNLSQNCKLTDKTLELISGMTALRSLNVSNSRVTNEGLRYLKPLKNLRTLS 303
Query: 355 LDARQITDTGLAALTS 370
L++ ++ + L S
Sbjct: 304 LESCKVNAADIKKLHS 319
>gi|255088361|ref|XP_002506103.1| predicted protein [Micromonas sp. RCC299]
gi|226521374|gb|ACO67361.1| predicted protein [Micromonas sp. RCC299]
Length = 610
Score = 270 bits (689), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 155/394 (39%), Positives = 229/394 (58%), Gaps = 1/394 (0%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
+LP D+SQ++F +LV +R LT F C L + L YPG+ D W+ V+A+ +L
Sbjct: 100 VLPSDLSQRVFEDLVQTRRLTARVTGDFIGCHLTEANLRSYPGLTDDWLAVLATSAPNLS 159
Query: 61 SVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAI 119
S++LSG + +T G L C L+SLD + C ++D L + +S L L+ + I
Sbjct: 160 SINLSGCAALTPDGFNALAACVELESLDVSECPGVNDNALAAVASMSRLRRLACAGCDGI 219
Query: 120 TAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGL 179
T G++ +G L ++LERC + GLV L GL +LE L+ WCN + +D+ L L
Sbjct: 220 TGAGLRYVSGATKLRCVNLERCNGLTNGLVYLSGLTELERLDAGWCNHVDSNDVTSLRSL 279
Query: 180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 239
LK L ++ +KV D G+A + L L LNL GC +T L L +L L+L C+
Sbjct: 280 KKLKHLNLARTKVDDQGVATIGSLSALETLNLAGCRITDGACFLLGGLTALKELSLEWCR 339
Query: 240 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 299
+ D G + + + L+VLNLG++ +TDE + HL L L ++LDSC +GD+ L
Sbjct: 340 VGDGGVRRLASLAKLEVLNLGYSSVTDEGVQHLAPLVKLREIDLDSCQVGDDACKALAEW 399
Query: 300 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 359
NL+ + LSDT VG+ GL+ +S LT L +NLS++ +SD + L +S++SL+LD R
Sbjct: 400 PNLEDVNLSDTAVGNLGLKRISKLTRLRRVNLSYSNVSDDGVMYLENAASIRSLSLDTRM 459
Query: 360 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
+TD GL L L + LDLFGARITD GA +LR
Sbjct: 460 VTDEGLGYLAKLKDIEELDLFGARITDEGAKHLR 493
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 100/200 (50%), Gaps = 13/200 (6%)
Query: 38 LGQYPGVNDKWMDVIA---------SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDF 88
L ++P + D + A S+ + L V+LS S+V+D G+++L++ ++++SL
Sbjct: 396 LAEWPNLEDVNLSDTAVGNLGLKRISKLTRLRRVNLSYSNVSDDGVMYLENAASIRSLSL 455
Query: 89 NFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGL 148
+ + ++D GL +L L ++ L IT +G K + L L+L G+
Sbjct: 456 DTRM-VTDEGLGYLAKLKDIEELDLF-GARITDEGAKHLRHMPRLKTLELCGGGITDAGV 513
Query: 149 VNL-KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 207
++ +L LN+ I+D+ + L L L SL + S++++ G+ L L LT
Sbjct: 514 KHIGDACRELTLLNLGQNFRISDAAVPFLLQLHKLGSLNLQYSRISNEGVTQLSQLSNLT 573
Query: 208 LLNLEGC-PVTAACLDSLSA 226
L L+GC V+ A ++ L A
Sbjct: 574 TLALKGCNRVSQAAVEELRA 593
>gi|147821391|emb|CAN67937.1| hypothetical protein VITISV_014237 [Vitis vinifera]
Length = 216
Score = 228 bits (580), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 114/178 (64%), Positives = 138/178 (77%), Gaps = 17/178 (9%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
MLPRDISQQIF+ V S CLT SLEAFRDCA+QD+ LG+YP VND WMD+I+SQG SLL
Sbjct: 47 MLPRDISQQIFDNFVDSHCLTSASLEAFRDCAIQDVNLGEYPEVNDSWMDIISSQGLSLL 106
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVDLSGS VTD GL LKDCSN+Q L FN+C QIS+ GL+++ GLSNLTSLSF+++N +T
Sbjct: 107 SVDLSGSSVTDDGLSLLKDCSNIQVLSFNYCDQISEPGLKNISGLSNLTSLSFKKSNTVT 166
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
A+GM+AF+ L+NL KLDLERC+RIHGGL++LK DSD+K LSG
Sbjct: 167 AEGMRAFSSLVNLAKLDLERCSRIHGGLIHLK-----------------DSDLKALSG 207
Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 8/99 (8%)
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+ I++QG+ +L+ +DL + GL LK ++ L+ +C+ I++ +K +
Sbjct: 96 DIISSQGL-------SLLSVDLSGSSVTDDGLSLLKDCSNIQVLSFNYCDQISEPGLKNI 148
Query: 177 SGLTNLKSLQISCSK-VTDSGIAYLKGLQKLTLLNLEGC 214
SGL+NL SL S VT G+ L L L+LE C
Sbjct: 149 SGLSNLTSLSFKKSNTVTAEGMRAFSSLVNLAKLDLERC 187
>gi|384254255|gb|EIE27729.1| RNI-like protein, partial [Coccomyxa subellipsoidea C-169]
Length = 515
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 143/398 (35%), Positives = 220/398 (55%), Gaps = 18/398 (4%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
LP D++Q + +EL+Y+ L + L F + +L LG+ GV D W+ +A QG+ +
Sbjct: 24 LPADLAQLVLDELIYTASLDQEGLALFSRQHIYNLKLGECAGVEDDWLRHLAPQGTGMHG 83
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
+ ++ SG L +NL+ L C +S L L LS +TSL+ + + I+
Sbjct: 84 LFIT----KHSGAAGL---TNLRDLSLQGCEGLSS--LSALTDLSKVTSLNLKGCSGIS- 133
Query: 122 QGMKAFAGLINLVKLD--LERC-TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
G++ +G + L + C + G G+ +LE+L++ WC+ ITD+D+K L+
Sbjct: 134 -GLRHLSGALFCASLGSVAQMCGSEYWSG--AWAGMKQLENLDLSWCSGITDADVKALAA 190
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNR 237
LT + LQ+S + V DSGI L+ + +L L L GC ++ + S+SAL SL LNL
Sbjct: 191 LTAITGLQLSRTLVADSGIFALRSMSRLRCLGLAGCSGISNGAVGSVSALTSLEELNLEW 250
Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
C +S G S + L+ LN+ + D L LTNL +LNLDSC + D GL +++
Sbjct: 251 CTVSVKGLSHLSTLTELRSLNVAYTTAGDNALAAWTSLTNLRTLNLDSCPVSDRGLHHIS 310
Query: 298 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT-GISDGSLRKLAGLSSLKSLNLD 356
L NL+ + LSDT + G+ + L ++ +NLS+T G+ D L +A L++L L+LD
Sbjct: 311 ELTNLEDVNLSDTAITDQGMIAFAPLKGMQRLNLSYTAGVGDLGLAAVARLTALTELHLD 370
Query: 357 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRS 394
R TD GL + LT L LDLFGARITD+G +LR
Sbjct: 371 GRSFTDVGLRTIAPLTQLQTLDLFGARITDAGCVHLRP 408
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 99/348 (28%), Positives = 170/348 (48%), Gaps = 9/348 (2%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
L++L L G+ D + +A+ +++ + LS + V DSG+ L+ S L+ L C
Sbjct: 169 LENLDLSWCSGITDADVKALAAL-TAITGLQLSRTLVADSGIFALRSMSRLRCLGLAGCS 227
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
IS+G + + L++L L+ ++ +G+ + L L L++ T L
Sbjct: 228 GISNGAVGSVSALTSLEELNLEWCT-VSVKGLSHLSTLTELRSLNVAYTTAGDNALAAWT 286
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGI---AYLKGLQKLTLL 209
L L +LN+ C ++D + +S LTNL+ + +S + +TD G+ A LKG+Q+L L
Sbjct: 287 SLTNLRTLNLDSCP-VSDRGLHHISELTNLEDVNLSDTAITDQGMIAFAPLKGMQRLNLS 345
Query: 210 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
G V L +++ L +L L+L+ +D G + + L+ L+L ITD
Sbjct: 346 YTAG--VGDLGLAAVARLTALTELHLDGRSFTDVGLRTIAPLTQLQTLDLFGARITDAGC 403
Query: 270 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS-DTQVGSSGLRHLSGLTNLES 328
VHL+ LE L + GI DEG+ L L L+ L L+ + ++ LSGL+ L
Sbjct: 404 VHLRPFRRLERLEICGGGISDEGVKELIWLTGLQHLSLAQNARITDRASLFLSGLSQLRG 463
Query: 329 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 376
+NL+ T ++ + L L++L+SL L ++ L L H
Sbjct: 464 LNLTGTQLTGNGILPLRSLTNLESLCLKRTRVKQAAADRLQPLLPRIH 511
>gi|452822896|gb|EME29911.1| leucine-rich repeat family protein [Galdieria sulphuraria]
Length = 588
Score = 198 bits (504), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 138/393 (35%), Positives = 221/393 (56%), Gaps = 4/393 (1%)
Query: 3 PRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSV 62
PR++ Q++ LV SR L LE + + L V + W+ + + S+L +
Sbjct: 80 PRELIQRLVEYLVESRRLNCEFLETLQQHCVYRLRFTSQLQVTNDWLFYLQNL-STLSRL 138
Query: 63 DLSGSD-VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
+L ++D GL +L + +L LD C+QI+ GL+HL GL L L + IT+
Sbjct: 139 ELKDCKFISDEGLSNLAEIVSLTYLDLAGCVQITSEGLQHLAGLKYLKVLVLKSCKQITS 198
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGG-LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
+G+ A L NL +LD+E+C+ + L +L L KLE N WC ++D + LS
Sbjct: 199 EGLSYLANLHNLTRLDIEQCSEVSDSFLQSLNRLTKLEDFNCAWCFRLSDEGLTILSNFH 258
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
++ L IS ++V+ + +L G+ +L +L + G + L L SL L++ C +
Sbjct: 259 RMRYLNISKTRVSQNFGRFLPGMPRLRVLKVAGTGFSDRDAQYLRGLYSLRELDVEGCSV 318
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECL-VHLKGLTNLESLNLDSCGIGDEGLVNLTGL 299
D + ++ LNLG+ +I++ + ++L + L+ LNLDSC IGD + +L+ L
Sbjct: 319 GDPFLATIYALPRIRKLNLGYTKISERGVSLYLGNMLKLQYLNLDSCLIGDFAVEHLSRL 378
Query: 300 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 359
LKCL+L+DT V SSGL L+ LT+LE++ L++T +S+ L L L+ L+SL+LD R
Sbjct: 379 EQLKCLDLTDTTVSSSGLSGLANLTSLETLILAYTSVSNSGLEHLKNLTKLESLSLDTRG 438
Query: 360 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
I+D GLA L L L HLDLFGA++TD+G ++
Sbjct: 439 ISDDGLAYLKKLKHLKHLDLFGAKVTDNGLRHI 471
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 64/186 (34%), Positives = 93/186 (50%), Gaps = 5/186 (2%)
Query: 216 VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLK 273
VT L L L +L L L C+ +SD+G ++I SL L+L G +IT E L HL
Sbjct: 121 VTNDWLFYLQNLSTLSRLELKDCKFISDEGLSNLAEIVSLTYLDLAGCVQITSEGLQHLA 180
Query: 274 GLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINL 331
GL L+ L L SC I EGL L L NL L++ ++V S L+ L+ LT LE N
Sbjct: 181 GLKYLKVLVLKSCKQITSEGLSYLANLHNLTRLDIEQCSEVSDSFLQSLNRLTKLEDFNC 240
Query: 332 SF-TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 390
++ +SD L L+ ++ LN+ +++ L + L L + G +D A
Sbjct: 241 AWCFRLSDEGLTILSNFHRMRYLNISKTRVSQNFGRFLPGMPRLRVLKVAGTGFSDRDAQ 300
Query: 391 YLRSKF 396
YLR +
Sbjct: 301 YLRGLY 306
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 73/257 (28%), Positives = 132/257 (51%), Gaps = 10/257 (3%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGL-IHLKDCSNLQSLDFNFCIQISDGGLEHL 102
V D ++ I + + ++L + +++ G+ ++L + LQ L+ + C+ I D +EHL
Sbjct: 318 VGDPFLATIYAL-PRIRKLNLGYTKISERGVSLYLGNMLKLQYLNLDSCL-IGDFAVEHL 375
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
L L L + +++ G+ A L +L L L + + GL +LK L KLESL++
Sbjct: 376 SRLEQLKCLDLT-DTTVSSSGLSGLANLTSLETLILAYTSVSNSGLEHLKNLTKLESLSL 434
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP--VTAAC 220
I+D + L L +LK L + +KVTD+G+ ++ + TL +LE C VT A
Sbjct: 435 D-TRGISDDGLAYLKKLKHLKHLDLFGAKVTDNGLRHISEIS--TLESLEVCAGGVTDAG 491
Query: 221 LDSLSALGSLFYLNLNR-CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
L+S+ L +L LNL++ +++D G S + L LNL + + D ++ +L
Sbjct: 492 LESIGKLRALRTLNLSQNHRITDAGLIHLSCLSHLTSLNLSYTNVGDGICSLVQKCPSLR 551
Query: 280 SLNLDSCGIGDEGLVNL 296
+ ++ CG+ + L
Sbjct: 552 MIGIERCGLSIAAKIRL 568
>gi|59802533|gb|AAX07510.1| putative regulatory subunit [Gemmata sp. Wa1-1]
Length = 550
Score = 197 bits (501), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 141/338 (41%), Positives = 199/338 (58%), Gaps = 5/338 (1%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L S++L + VTD+GL LK + L SLD +++D GL+ L+GL++LT L R
Sbjct: 90 TNLTSLNLGSTGVTDAGLQDLKGLNKLASLDLR-GTEVTDVGLQELKGLNSLTELRLRAT 148
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKP 175
+T G++ GL NL LDL R TR+ GL LKGL L SL+++ +TD+ +K
Sbjct: 149 E-VTNVGLQELKGLNNLASLDL-RDTRVTDVGLQELKGLNNLASLDLRDTK-VTDTGLKE 205
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
L GLTNL +L + ++VTD G+ L GL KL L+L VT L L + L L+L
Sbjct: 206 LKGLTNLTALDLFSTQVTDVGLKELNGLTKLASLDLSRTGVTGTGLIELKSFTKLALLDL 265
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
+ +++D G + + SL L+LG +TD L LKGLT+L SL+L D GL
Sbjct: 266 SGTRVTDAGLHQLKGLTSLTSLHLGGTRVTDVGLKELKGLTSLTSLHLSGTRTTDAGLQE 325
Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355
L GL NL L LSDT+V GL+ L T L S++L TG++D L++L GL++L +L+L
Sbjct: 326 LNGLTNLTSLHLSDTRVTDVGLKELKSFTKLTSLHLGGTGVTDTGLKELKGLTNLTALDL 385
Query: 356 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
+ Q+TD GL L LT LT L L A ITD+G L+
Sbjct: 386 FSTQVTDVGLQELNGLTKLTSLYLSAAAITDTGLKELK 423
Score = 194 bits (493), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 139/334 (41%), Positives = 189/334 (56%), Gaps = 3/334 (0%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L S+DL G++VTD GL LK ++L L ++++ GL+ L+GL+NL SL R +
Sbjct: 116 LASLDLRGTEVTDVGLQELKGLNSLTELRLR-ATEVTNVGLQELKGLNNLASLDLR-DTR 173
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
+T G++ GL NL LDL GL LKGL L +L++ + +TD +K L+G
Sbjct: 174 VTDVGLQELKGLNNLASLDLRDTKVTDTGLKELKGLTNLTALDL-FSTQVTDVGLKELNG 232
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
LT L SL +S + VT +G+ LK KL LL+L G VT A L L L SL L+L
Sbjct: 233 LTKLASLDLSRTGVTGTGLIELKSFTKLALLDLSGTRVTDAGLHQLKGLTSLTSLHLGGT 292
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
+++D G ++ + SL L+L TD L L GLTNL SL+L + D GL L
Sbjct: 293 RVTDVGLKELKGLTSLTSLHLSGTRTTDAGLQELNGLTNLTSLHLSDTRVTDVGLKELKS 352
Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
L L L T V +GL+ L GLTNL +++L T ++D L++L GL+ L SL L A
Sbjct: 353 FTKLTSLHLGGTGVTDTGLKELKGLTNLTALDLFSTQVTDVGLQELNGLTKLTSLYLSAA 412
Query: 359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
ITDTGL L LT L LDL G R+TD+G L
Sbjct: 413 AITDTGLKELKELTQLALLDLSGTRVTDAGLQEL 446
Score = 194 bits (492), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 146/382 (38%), Positives = 207/382 (54%), Gaps = 18/382 (4%)
Query: 11 FNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVT 70
EL LTE+ L A + ++ L + G+N+ L S+DL + VT
Sbjct: 131 LQELKGLNSLTELRLRA---TEVTNVGLQELKGLNN------------LASLDLRDTRVT 175
Query: 71 DSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL 130
D GL LK +NL SLD +++D GL+ L+GL+NLT+L + +T G+K GL
Sbjct: 176 DVGLQELKGLNNLASLDLRDT-KVTDTGLKELKGLTNLTALDLF-STQVTDVGLKELNGL 233
Query: 131 INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS 190
L LDL R GL+ LK KL L++ +TD+ + L GLT+L SL + +
Sbjct: 234 TKLASLDLSRTGVTGTGLIELKSFTKLALLDLSGTR-VTDAGLHQLKGLTSLTSLHLGGT 292
Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 250
+VTD G+ LKGL LT L+L G T A L L+ L +L L+L+ +++D G ++
Sbjct: 293 RVTDVGLKELKGLTSLTSLHLSGTRTTDAGLQELNGLTNLTSLHLSDTRVTDVGLKELKS 352
Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 310
L L+LG +TD L LKGLTNL +L+L S + D GL L GL L L LS
Sbjct: 353 FTKLTSLHLGGTGVTDTGLKELKGLTNLTALDLFSTQVTDVGLQELNGLTKLTSLYLSAA 412
Query: 311 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 370
+ +GL+ L LT L ++LS T ++D L++L+GL+ L L L ++TD GL L
Sbjct: 413 AITDTGLKELKELTQLALLDLSGTRVTDAGLQELSGLTKLAFLRLGGTRVTDAGLKELKG 472
Query: 371 LTGLTHLDLFGARITDSGAAYL 392
LT LT L L G R+TD+G L
Sbjct: 473 LTSLTSLHLSGTRVTDAGLQEL 494
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 132/338 (39%), Positives = 195/338 (57%), Gaps = 3/338 (0%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L S+ LS + VT+ GL LK+ +NL +LD F ++D GL+ L+GL+NLTSL+
Sbjct: 18 ANLTSLGLSATKVTNEGLKELKELTNLTALDL-FSTGVTDTGLQELKGLTNLTSLNLGVT 76
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+T G++ GL NL L+L GL +LKGL KL SL+++ +TD ++ L
Sbjct: 77 Q-VTGAGLQELKGLTNLTSLNLGSTGVTDAGLQDLKGLNKLASLDLRGTE-VTDVGLQEL 134
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
GL +L L++ ++VT+ G+ LKGL L L+L VT L L L +L L+L
Sbjct: 135 KGLNSLTELRLRATEVTNVGLQELKGLNNLASLDLRDTRVTDVGLQELKGLNNLASLDLR 194
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
+++D G ++ + +L L+L ++TD L L GLT L SL+L G+ GL+ L
Sbjct: 195 DTKVTDTGLKELKGLTNLTALDLFSTQVTDVGLKELNGLTKLASLDLSRTGVTGTGLIEL 254
Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
L L+LS T+V +GL L GLT+L S++L T ++D L++L GL+SL SL+L
Sbjct: 255 KSFTKLALLDLSGTRVTDAGLHQLKGLTSLTSLHLGGTRVTDVGLKELKGLTSLTSLHLS 314
Query: 357 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRS 394
+ TD GL L LT LT L L R+TD G L+S
Sbjct: 315 GTRTTDAGLQELNGLTNLTSLHLSDTRVTDVGLKELKS 352
Score = 188 bits (478), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 140/366 (38%), Positives = 197/366 (53%), Gaps = 15/366 (4%)
Query: 28 FRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLD 87
R + D+ L + G+N SL + L ++VT+ GL LK +NL SLD
Sbjct: 121 LRGTEVTDVGLQELKGLN------------SLTELRLRATEVTNVGLQELKGLNNLASLD 168
Query: 88 FNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGG 147
+++D GL+ L+GL+NL SL R + +T G+K GL NL LDL G
Sbjct: 169 LRDT-RVTDVGLQELKGLNNLASLDLR-DTKVTDTGLKELKGLTNLTALDLFSTQVTDVG 226
Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 207
L L GL KL SL++ +T + + L T L L +S ++VTD+G+ LKGL LT
Sbjct: 227 LKELNGLTKLASLDLSRTG-VTGTGLIELKSFTKLALLDLSGTRVTDAGLHQLKGLTSLT 285
Query: 208 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 267
L+L G VT L L L SL L+L+ + +D G ++ + + +L L+L +TD
Sbjct: 286 SLHLGGTRVTDVGLKELKGLTSLTSLHLSGTRTTDAGLQELNGLTNLTSLHLSDTRVTDV 345
Query: 268 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 327
L LK T L SL+L G+ D GL L GL NL L+L TQV GL+ L+GLT L
Sbjct: 346 GLKELKSFTKLTSLHLGGTGVTDTGLKELKGLTNLTALDLFSTQVTDVGLQELNGLTKLT 405
Query: 328 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 387
S+ LS I+D L++L L+ L L+L ++TD GL L+ LT L L L G R+TD+
Sbjct: 406 SLYLSAAAITDTGLKELKELTQLALLDLSGTRVTDAGLQELSGLTKLAFLRLGGTRVTDA 465
Query: 388 GAAYLR 393
G L+
Sbjct: 466 GLKELK 471
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 126/304 (41%), Positives = 170/304 (55%), Gaps = 2/304 (0%)
Query: 90 FCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLV 149
F Q++D GL+ L+GL+NLTSL +T +G+K L NL LDL GL
Sbjct: 2 FSTQVTDAGLQELKGLANLTSLGLSATK-VTNEGLKELKELTNLTALDLFSTGVTDTGLQ 60
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL 209
LKGL L SLN+ +T + ++ L GLTNL SL + + VTD+G+ LKGL KL L
Sbjct: 61 ELKGLTNLTSLNL-GVTQVTGAGLQELKGLTNLTSLNLGSTGVTDAGLQDLKGLNKLASL 119
Query: 210 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
+L G VT L L L SL L L ++++ G ++ + +L L+L +TD L
Sbjct: 120 DLRGTEVTDVGLQELKGLNSLTELRLRATEVTNVGLQELKGLNNLASLDLRDTRVTDVGL 179
Query: 270 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 329
LKGL NL SL+L + D GL L GL NL L+L TQV GL+ L+GLT L S+
Sbjct: 180 QELKGLNNLASLDLRDTKVTDTGLKELKGLTNLTALDLFSTQVTDVGLKELNGLTKLASL 239
Query: 330 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 389
+LS TG++ L +L + L L+L ++TD GL L LT LT L L G R+TD G
Sbjct: 240 DLSRTGVTGTGLIELKSFTKLALLDLSGTRVTDAGLHQLKGLTSLTSLHLGGTRVTDVGL 299
Query: 390 AYLR 393
L+
Sbjct: 300 KELK 303
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 133/348 (38%), Positives = 186/348 (53%), Gaps = 15/348 (4%)
Query: 28 FRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLD 87
RD + D+ L + G+N+ L S+DL + VTD+GL LK +NL +LD
Sbjct: 169 LRDTRVTDVGLQELKGLNN------------LASLDLRDTKVTDTGLKELKGLTNLTALD 216
Query: 88 FNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGG 147
F Q++D GL+ L GL+ L SL R +T G+ L LDL G
Sbjct: 217 L-FSTQVTDVGLKELNGLTKLASLDLSRT-GVTGTGLIELKSFTKLALLDLSGTRVTDAG 274
Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 207
L LKGL L SL++ +TD +K L GLT+L SL +S ++ TD+G+ L GL LT
Sbjct: 275 LHQLKGLTSLTSLHLGGTR-VTDVGLKELKGLTSLTSLHLSGTRTTDAGLQELNGLTNLT 333
Query: 208 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 267
L+L VT L L + L L+L ++D G ++ + +L L+L ++TD
Sbjct: 334 SLHLSDTRVTDVGLKELKSFTKLTSLHLGGTGVTDTGLKELKGLTNLTALDLFSTQVTDV 393
Query: 268 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 327
L L GLT L SL L + I D GL L L L L+LS T+V +GL+ LSGLT L
Sbjct: 394 GLQELNGLTKLTSLYLSAAAITDTGLKELKELTQLALLDLSGTRVTDAGLQELSGLTKLA 453
Query: 328 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 375
+ L T ++D L++L GL+SL SL+L ++TD GL L+ LT LT
Sbjct: 454 FLRLGGTRVTDAGLKELKGLTSLTSLHLSGTRVTDAGLQELSGLTNLT 501
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 130/326 (39%), Positives = 183/326 (56%), Gaps = 3/326 (0%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
+ VTD+GL LK +NL SL + ++++ GL+ L+ L+NLT+L + +T G++
Sbjct: 4 TQVTDAGLQELKGLANLTSLGLS-ATKVTNEGLKELKELTNLTALDL-FSTGVTDTGLQE 61
Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
GL NL L+L GL LKGL L SLN+ +TD+ ++ L GL L SL
Sbjct: 62 LKGLTNLTSLNLGVTQVTGAGLQELKGLTNLTSLNL-GSTGVTDAGLQDLKGLNKLASLD 120
Query: 187 ISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE 246
+ ++VTD G+ LKGL LT L L VT L L L +L L+L +++D G +
Sbjct: 121 LRGTEVTDVGLQELKGLNSLTELRLRATEVTNVGLQELKGLNNLASLDLRDTRVTDVGLQ 180
Query: 247 KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 306
+ + +L L+L ++TD L LKGLTNL +L+L S + D GL L GL L L+
Sbjct: 181 ELKGLNNLASLDLRDTKVTDTGLKELKGLTNLTALDLFSTQVTDVGLKELNGLTKLASLD 240
Query: 307 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 366
LS T V +GL L T L ++LS T ++D L +L GL+SL SL+L ++TD GL
Sbjct: 241 LSRTGVTGTGLIELKSFTKLALLDLSGTRVTDAGLHQLKGLTSLTSLHLGGTRVTDVGLK 300
Query: 367 ALTSLTGLTHLDLFGARITDSGAAYL 392
L LT LT L L G R TD+G L
Sbjct: 301 ELKGLTSLTSLHLSGTRTTDAGLQEL 326
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 102/248 (41%), Positives = 140/248 (56%), Gaps = 1/248 (0%)
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
GL LKGL L SL + +T+ +K L LTNL +L + + VTD+G+ LKGL L
Sbjct: 10 GLQELKGLANLTSLGLSATK-VTNEGLKELKELTNLTALDLFSTGVTDTGLQELKGLTNL 68
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 266
T LNL VT A L L L +L LNL ++D G + + L L+L E+TD
Sbjct: 69 TSLNLGVTQVTGAGLQELKGLTNLTSLNLGSTGVTDAGLQDLKGLNKLASLDLRGTEVTD 128
Query: 267 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 326
L LKGL +L L L + + + GL L GL NL L+L DT+V GL+ L GL NL
Sbjct: 129 VGLQELKGLNSLTELRLRATEVTNVGLQELKGLNNLASLDLRDTRVTDVGLQELKGLNNL 188
Query: 327 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
S++L T ++D L++L GL++L +L+L + Q+TD GL L LT L LDL +T
Sbjct: 189 ASLDLRDTKVTDTGLKELKGLTNLTALDLFSTQVTDVGLKELNGLTKLASLDLSRTGVTG 248
Query: 387 SGAAYLRS 394
+G L+S
Sbjct: 249 TGLIELKS 256
Score = 38.5 bits (88), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
L G+ VTD+GL LK ++L SL + +++D GL+ L GL+NLT+ R
Sbjct: 457 LGGTRVTDAGLKELKGLTSLTSLHLS-GTRVTDAGLQELSGLTNLTTTGPPR 507
>gi|303286333|ref|XP_003062456.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226455973|gb|EEH53275.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 519
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 133/407 (32%), Positives = 210/407 (51%), Gaps = 18/407 (4%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
LP D++Q++F+ L + LT +L F C L D V D ++ + +SL
Sbjct: 1 LPPDLAQRVFDVLARANELTVDALGRFEGCFLSDASGLDANVVTDAFLAALRDVATSLSR 60
Query: 62 VDLSGSDVTDSGLI--HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAI 119
+DL+G D SG + + C+ + ++ + C + D L + ++L S N+A+
Sbjct: 61 IDLTGCDALTSGGLRSNFPCCARMTIVNVSECAGVDDDALAAMASATHLKSFFCEGNDAV 120
Query: 120 TAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM------ 173
T G++ A L +L +L ERC R+ G+ +L GL L SLN+ WC ++ +
Sbjct: 121 TGSGVRHLASLTSLRELSFERCARLREGMCHLAGLRNLRSLNLGWCGKLSAKETSRALTP 180
Query: 174 -------KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 226
P S L + + T + L G +L LN+ GC + L L
Sbjct: 181 FFPASASAPRSTPIELSLARTGANADTARALGQLAG--RLVALNVSGCAMNDDALHFLGG 238
Query: 227 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 286
L +L L+L RC++SD G + + L+ LNLG+ +T++ ++ L LT L +NLDS
Sbjct: 239 LINLRSLSLERCRVSDVGVRQLCGLRDLRELNLGYTRVTNDGVLALAPLTELRVVNLDSL 298
Query: 287 G-IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 345
G +GD G+ L+ L +SDT VG G+R L L +NL +T ++D L L
Sbjct: 299 GDVGDAGMEVARRWEKLESLCVSDTGVGDGGVRKLKSCARLRDLNLGYTNVTDDGLEHLE 358
Query: 346 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
++SL++LNLD+R ITD G+ L +L LT +DLFGA+I+D GA+ L
Sbjct: 359 DMTSLRNLNLDSRLITDDGVRHLANLGALTAIDLFGAKISDEGASRL 405
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 77/296 (26%), Positives = 126/296 (42%), Gaps = 55/296 (18%)
Query: 43 GVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
G N + L+++++SG + D L L NL+SL C ++SD G+ L
Sbjct: 202 GANADTARALGQLAGRLVALNVSGCAMNDDALHFLGGLINLRSLSLERC-RVSDVGVRQL 260
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINL--VKLD---------LERCTRIH------ 145
GL +L L+ +T G+ A A L L V LD +E R
Sbjct: 261 CGLRDLRELNLGYTR-VTNDGVLALAPLTELRVVNLDSLGDVGDAGMEVARRWEKLESLC 319
Query: 146 --------GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGI 197
GG+ LK +L LN+ + N +TD ++ L +T+L++L + +TD G+
Sbjct: 320 VSDTGVGDGGVRKLKSCARLRDLNLGYTN-VTDDGLEHLEDMTSLRNLNLDSRLITDDGV 378
Query: 198 AYLKGLQKLTLLNLEGCPVTAA-----------------CLDSLSALG---------SLF 231
+L L LT ++L G ++ C SL+ +G +
Sbjct: 379 RHLANLGALTAIDLFGAKISDEGASRLFKCTPKLERLELCGGSLTNVGVKRIAEHCKGMK 438
Query: 232 YLNLNR-CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 286
LN+ R +++DD + + L LNL F++IT + + L L L SL + C
Sbjct: 439 TLNIGRNAKITDDCVDDVVTMRELTSLNLAFSKITSDGVRKLAALPCLTSLAIKGC 494
>gi|46446659|ref|YP_008024.1| hypothetical protein pc1025 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400300|emb|CAF23749.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 695
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 146/374 (39%), Positives = 213/374 (56%), Gaps = 13/374 (3%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNF 90
ALQ L LG+Y + D + + ++L +DLS D+TD GL HL+ + LQ LD +
Sbjct: 301 ALQKLNLGRYNQLTDAGLAHLKPL-TALQRLDLSFCEDLTDDGLAHLRPLTALQRLDLRY 359
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLV 149
C +++D GL HLR L+ L L+ N T G+ + L L L+L C + GLV
Sbjct: 360 CEKLTDDGLVHLRPLTALQRLNLS-NCWHTGAGLSHLSPLTGLQHLNLYECINLTDAGLV 418
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTL 208
+LK L L+ LN+ +C+ +TD+ + L LT L+ L +S C+ +TD+G+ +LK L L
Sbjct: 419 HLKLLTGLQHLNLSYCDELTDAGLVHLKLLTGLQHLNLSNCNNLTDAGLVHLKFLTGLQH 478
Query: 209 LNLEGC-PVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF-NEIT 265
LNL C +T A L L L L +LNL+ C L+D G + + L+ L+L + +++T
Sbjct: 479 LNLSYCDELTDAGLVHLKLLTGLQHLNLSNCNNLTDAGLAHLTPLTGLQHLDLSYCSKLT 538
Query: 266 DECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGL 323
D+ L HLK LT L+ LNL +C + D GLV+L L L+ L LSD + + GL HL L
Sbjct: 539 DDGLAHLKPLTALQCLNLSNCRNLTDAGLVHLKLLTGLQHLNLSDYKNLTDDGLIHLMPL 598
Query: 324 TNLESINL-SFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFG 381
L + L ++D L L L++L+ LNL +TD GLA LTSLTGL HL+L G
Sbjct: 599 MALRHLELLGCENLTDAGLVHLTPLTALQHLNLSHCDDLTDAGLAHLTSLTGLQHLELLG 658
Query: 382 -ARITDSGAAYLRS 394
+TD+G A ++
Sbjct: 659 CENLTDAGLARFKT 672
Score = 161 bits (407), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 142/389 (36%), Positives = 212/389 (54%), Gaps = 16/389 (4%)
Query: 17 SRCLTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGS-DVTDSGL 74
+R LT+ L ++C L+ L L + + D + + ++L ++LS S ++TD+GL
Sbjct: 235 NRYLTDAHLLILKNCKNLKVLHLEKCRALTDDGLAHLTPL-TALQYLNLSASYNLTDAGL 293
Query: 75 IHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134
+HL + LQ L+ Q++D GL HL+ L+ L L +T G+ L L
Sbjct: 294 VHLAPLTALQKLNLGRYNQLTDAGLAHLKPLTALQRLDLSFCEDLTDDGLAHLRPLTALQ 353
Query: 135 KLDLERCTRI-HGGLVNLKGLMKLESLNIK--WCNCITDSDMKPLSGLTNLKSLQISCSK 191
+LDL C ++ GLV+L+ L L+ LN+ W S + PL+GL +L + C
Sbjct: 354 RLDLRYCEKLTDDGLVHLRPLTALQRLNLSNCWHTGAGLSHLSPLTGLQHLNLYE--CIN 411
Query: 192 VTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFS 249
+TD+G+ +LK L L LNL C +T A L L L L +LNL+ C L+D G
Sbjct: 412 LTDAGLVHLKLLTGLQHLNLSYCDELTDAGLVHLKLLTGLQHLNLSNCNNLTDAGLVHLK 471
Query: 250 KIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLEL 307
+ L+ LNL + +E+TD LVHLK LT L+ LNL +C + D GL +LT L L+ L+L
Sbjct: 472 FLTGLQHLNLSYCDELTDAGLVHLKLLTGLQHLNLSNCNNLTDAGLAHLTPLTGLQHLDL 531
Query: 308 SD-TQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNL-DARQITDTG 364
S +++ GL HL LT L+ +NLS ++D L L L+ L+ LNL D + +TD G
Sbjct: 532 SYCSKLTDDGLAHLKPLTALQCLNLSNCRNLTDAGLVHLKLLTGLQHLNLSDYKNLTDDG 591
Query: 365 LAALTSLTGLTHLDLFG-ARITDSGAAYL 392
L L L L HL+L G +TD+G +L
Sbjct: 592 LIHLMPLMALRHLELLGCENLTDAGLVHL 620
Score = 137 bits (346), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 121/322 (37%), Positives = 175/322 (54%), Gaps = 11/322 (3%)
Query: 83 LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT 142
++ L+F+ ++D L L+ NL L + A+T G+ L L L+L
Sbjct: 227 IEGLNFSNNRYLTDAHLLILKNCKNLKVLHLEKCRALTDDGLAHLTPLTALQYLNLSASY 286
Query: 143 RI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYL 200
+ GLV+L L L+ LN+ N +TD+ + L LT L+ L +S C +TD G+A+L
Sbjct: 287 NLTDAGLVHLAPLTALQKLNLGRYNQLTDAGLAHLKPLTALQRLDLSFCEDLTDDGLAHL 346
Query: 201 KGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 259
+ L L L+L C +T L L L +L LNL+ C + G S + L+ LNL
Sbjct: 347 RPLTALQRLDLRYCEKLTDDGLVHLRPLTALQRLNLSNCWHTGAGLSHLSPLTGLQHLNL 406
Query: 260 G--FNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSD-TQVGSS 315
N +TD LVHLK LT L+ LNL C + D GLV+L L L+ L LS+ + +
Sbjct: 407 YECIN-LTDAGLVHLKLLTGLQHLNLSYCDELTDAGLVHLKLLTGLQHLNLSNCNNLTDA 465
Query: 316 GLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTG 373
GL HL LT L+ +NLS+ ++D L L L+ L+ LNL + +TD GLA LT LTG
Sbjct: 466 GLVHLKFLTGLQHLNLSYCDELTDAGLVHLKLLTGLQHLNLSNCNNLTDAGLAHLTPLTG 525
Query: 374 LTHLDL-FGARITDSGAAYLRS 394
L HLDL + +++TD G A+L+
Sbjct: 526 LQHLDLSYCSKLTDDGLAHLKP 547
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 96/246 (39%), Positives = 136/246 (55%), Gaps = 8/246 (3%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC 214
K+E LN +TD+ + L NLK L + C +TD G+A+L L L LNL
Sbjct: 226 KIEGLNFSNNRYLTDAHLLILKNCKNLKVLHLEKCRALTDDGLAHLTPLTALQYLNLSAS 285
Query: 215 P-VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNE-ITDECLVH 271
+T A L L+ L +L LNL R QL+D G + +L+ L+L F E +TD+ L H
Sbjct: 286 YNLTDAGLVHLAPLTALQKLNLGRYNQLTDAGLAHLKPLTALQRLDLSFCEDLTDDGLAH 345
Query: 272 LKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 330
L+ LT L+ L+L C + D+GLV+L L L+ L LS+ +GL HLS LT L+ +N
Sbjct: 346 LRPLTALQRLDLRYCEKLTDDGLVHLRPLTALQRLNLSNCWHTGAGLSHLSPLTGLQHLN 405
Query: 331 L-SFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGA-RITDS 387
L ++D L L L+ L+ LNL ++TD GL L LTGL HL+L +TD+
Sbjct: 406 LYECINLTDAGLVHLKLLTGLQHLNLSYCDELTDAGLVHLKLLTGLQHLNLSNCNNLTDA 465
Query: 388 GAAYLR 393
G +L+
Sbjct: 466 GLVHLK 471
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 55/112 (49%), Gaps = 8/112 (7%)
Query: 33 LQDLCLGQYPGVND----KWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDF 88
LQ L L Y + D M ++A + LL + ++TD+GL+HL + LQ L+
Sbjct: 576 LQHLNLSDYKNLTDDGLIHLMPLMALRHLELLGCE----NLTDAGLVHLTPLTALQHLNL 631
Query: 89 NFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
+ C ++D GL HL L+ L L +T G+ F + N + L ++R
Sbjct: 632 SHCDDLTDAGLAHLTSLTGLQHLELLGCENLTDAGLARFKTVANSLYLIIKR 683
Score = 41.2 bits (95), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 50/108 (46%), Gaps = 1/108 (0%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
++TD GLIHL L+ L+ C ++D GL HL L+ L L+ + +T G+
Sbjct: 586 NLTDDGLIHLMPLMALRHLELLGCENLTDAGLVHLTPLTALQHLNLSHCDDLTDAGLAHL 645
Query: 128 AGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
L L L+L C + GL K + L IK + +S +K
Sbjct: 646 TSLTGLQHLELLGCENLTDAGLARFKTVANSLYLIIKRFFVLRESRIK 693
>gi|307107435|gb|EFN55678.1| hypothetical protein CHLNCDRAFT_133919 [Chlorella variabilis]
Length = 553
Score = 178 bits (451), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 137/363 (37%), Positives = 201/363 (55%), Gaps = 27/363 (7%)
Query: 36 LCLGQYPG-VNDKWMDVIASQGSSLLSVDLSGSDVT--DSGLIHLKDCSNLQSLDFNFCI 92
L LG YP V W+ +++ SL + DLS ++ + D L L +L L ++C+
Sbjct: 75 LPLGAYPERVQPSWLRCLST--PSLEAADLSKTEASGMDEVLASLGPTPHLAQLCLDYCV 132
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
++DGGL L+G+++L LS +TA GM GL L +L L+ C +I L L
Sbjct: 133 DLTDGGLALLQGMTSLEELSLAGCELLTAVGMGHLRGLTRLRRLSLQTCHQI--SLAPLA 190
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
L +LE L++ WC+ + DSD ++VTD G+A L L +L LNL
Sbjct: 191 QLRQLEQLDVGWCSSLDDSD-----------------AQVTDHGLACLHSLGQLRALNLA 233
Query: 213 GCPVTAACLDSL-SALGSLFYLNLNRC-QLSDDGCEKFSKIG-SLKVLNLGFNEITDECL 269
G V+ L +L L L LNL RC Q D S+ L+ L+LG+ ++D L
Sbjct: 234 GVRVSDEALAALLRHLPHLRALNLERCLQAGDASLAAVSQRALQLRELHLGYTAVSDRGL 293
Query: 270 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 329
+ L GLT L L+L++C +GD GL L+ L ++ L+LSDT + + ++ + LE +
Sbjct: 294 LLLGGLTQLHVLSLENCSVGDGGLAVLSHLTQMRQLDLSDTSASNETMSTVAAMRQLECL 353
Query: 330 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 389
NLSFTG++D L++L LSSL+ LNLD+R TD G+ ++ L GL LDLFGARI D+G
Sbjct: 354 NLSFTGVNDLGLKRLRRLSSLRCLNLDSRHFTDAGMVSVAQLAGLECLDLFGARIGDAGC 413
Query: 390 AYL 392
A L
Sbjct: 414 ASL 416
>gi|428173313|gb|EKX42216.1| hypothetical protein GUITHDRAFT_74106 [Guillardia theta CCMP2712]
Length = 527
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 147/396 (37%), Positives = 223/396 (56%), Gaps = 9/396 (2%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAF-RDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
+P ++ Q +F+ L YSR L + L R C D L YP + D W++V+ +L
Sbjct: 42 IPNEMVQALFDSLAYSRRLEKSHLPLLSRIC---DASLFAYPLIADDWLEVLGESFHALT 98
Query: 61 SVDLSGS-DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAI 119
+D+S VTD G+ L+ +L+S+ C+++ D LE + LS+L+ LS +
Sbjct: 99 RLDMSNCIHVTDEGISRLRSLQSLRSIKLENCLRLGDATLEVIGELSSLSHLSVSACTRM 158
Query: 120 TAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
+ G+ + L+ + L+LER TR+ G+ +L+ L L LN+ W N DS + L
Sbjct: 159 ASSGVSCLSQLVRMTDLNLERLTRLDSEGIESLEKLTNLRILNLGWTNADDDS-FESLRS 217
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA-ACLDSLSALGSLFYLNLNR 237
L LK L + T+ G+ L L +L L + C V A + L LS+LG L L+L++
Sbjct: 218 LPRLKRLNVCACPFTEDGLQALCSLTQLESLRMCSCKVGATSALVELSSLGKLKLLDLSQ 277
Query: 238 CQ-LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
C+ + D E + LK+L L +TD L +L L +L++LNLD C + + GL +
Sbjct: 278 CEHVGDQTLEALRGLSDLKILLLAHTRVTDIGLGYLSSLWDLKTLNLDCCHVTNGGLQTI 337
Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
L NL+ L+LSD V SSGL L+GLT L+S+NL TG+SD + + GL++L LNLD
Sbjct: 338 ANLTNLENLDLSDNVVTSSGLALLTGLTTLKSLNLFSTGVSDAGVIHVTGLTNLVRLNLD 397
Query: 357 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
+R ITD+GLA ++ LT L LDLFGA++T G Y+
Sbjct: 398 SRLITDSGLACISGLTNLQELDLFGAKVTHHGTIYI 433
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 108/231 (46%), Gaps = 28/231 (12%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
L+ + VTD GL +L +L++L+ + C +++GGL+ + L+NL +L +N +T+ G
Sbjct: 300 LAHTRVTDIGLGYLSSLWDLKTLNLD-CCHVTNGGLQTIANLTNLENLDLS-DNVVTSSG 357
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
+ GL L L+L G++++ GL L LN+ ITDS + +SGLTNL+
Sbjct: 358 LALLTGLTTLKSLNLFSTGVSDAGVIHVTGLTNLVRLNLD-SRLITDSGLACISGLTNLQ 416
Query: 184 SLQISCSKVTDSGIAY------------------------LKGLQKLTLLNL-EGCPVTA 218
L + +KVT G Y LK L ++ LN+ + ++
Sbjct: 417 ELDLFGAKVTHHGTIYIGLLTSLTSLELCGGGLTDEAMRELKRLTRMRNLNVSQNESLSN 476
Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
+S + L LN+ S DG + L L L F+ ++ CL
Sbjct: 477 GSFIPMSRMSLLTSLNIAGTNFSSDGARHLTIFTDLTSLCLRFDCLSRTCL 527
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 69/268 (25%), Positives = 117/268 (43%), Gaps = 51/268 (19%)
Query: 133 LVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPL-SGLTNLKSLQISCS 190
L +LD+ C + G+ L+ L L S+ ++ C + D+ ++ + + +C+
Sbjct: 97 LTRLDMSNCIHVTDEGISRLRSLQSLRSIKLENCLRLGDATLEVIGELSSLSHLSVSACT 156
Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 250
++ SG++ L L ++T LNLE L R L +G E K
Sbjct: 157 RMASSGVSCLSQLVRMTDLNLE---------------------RLTR--LDSEGIESLEK 193
Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 310
+ +L++LNLG+ D+ L+ L L+ LN+ +C ++
Sbjct: 194 LTNLRILNLGWTNADDDSFESLRSLPRLKRLNVCACPFTED------------------- 234
Query: 311 QVGSSGLRHLSGLTNLESINLSFTGI-SDGSLRKLAGLSSLKSLNL-DARQITDTGLAAL 368
GL+ L LT LES+ + + + +L +L+ L LK L+L + D L AL
Sbjct: 235 -----GLQALCSLTQLESLRMCSCKVGATSALVELSSLGKLKLLDLSQCEHVGDQTLEAL 289
Query: 369 TSLTGLTHLDLFGARITDSGAAYLRSKF 396
L+ L L L R+TD G YL S +
Sbjct: 290 RGLSDLKILLLAHTRVTDIGLGYLSSLW 317
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 88/189 (46%), Gaps = 26/189 (13%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++DLS + VT SGL L + L+SL+ F +SD G+ H+ GL+NL L+ +
Sbjct: 341 TNLENLDLSDNVVTSSGLALLTGLTTLKSLNL-FSTGVSDAGVIHVTGLTNLVRLNLD-S 398
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLV------------------------NLK 152
IT G+ +GL NL +LDL H G + LK
Sbjct: 399 RLITDSGLACISGLTNLQELDLFGAKVTHHGTIYIGLLTSLTSLELCGGGLTDEAMRELK 458
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
L ++ +LN+ +++ P+S ++ L SL I+ + + G +L LT L L
Sbjct: 459 RLTRMRNLNVSQNESLSNGSFIPMSRMSLLTSLNIAGTNFSSDGARHLTIFTDLTSLCLR 518
Query: 213 GCPVTAACL 221
++ CL
Sbjct: 519 FDCLSRTCL 527
>gi|149174587|ref|ZP_01853213.1| hypothetical protein PM8797T_09949 [Planctomyces maris DSM 8797]
gi|148846697|gb|EDL61034.1| hypothetical protein PM8797T_09949 [Planctomyces maris DSM 8797]
Length = 540
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 124/350 (35%), Positives = 182/350 (52%), Gaps = 43/350 (12%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFN--------------------------- 89
S L ++L G+ + +GL++LK ++L+ LD +
Sbjct: 181 SELRVLELEGTQLDGTGLVYLKHLNHLEELDLDNYNNNFVGWNDGESENEPRPQIRDAGL 240
Query: 90 --------------FCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135
F +ISD GL HL+ L L SL F R N I+ +G+ GL+NL
Sbjct: 241 KHIGKLKHLKKLSLFGAEISDVGLAHLQDLKKLESLEFAREN-ISDKGVAHLKGLLNLTS 299
Query: 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS 195
L L+ GLV+L L KL+SL++ I+D+ + L LT+LKSL +S + V+D
Sbjct: 300 LRLDGSRVSDAGLVHLAKLQKLQSLDLG-NTSISDTGLIHLQELTSLKSLDLSDTAVSDD 358
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ +L LQ L L L ++ L SL L L YL++ +++D G +++GSL
Sbjct: 359 GLIHLSRLQNLESLYLRSTNLSGVGLSSLKNLSMLQYLDMGYSKMNDQGLIAVAELGSLD 418
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 315
L L ITD+ LVHL GLTNL+ L+L I D GLV+L+ L LK L+L T++ +
Sbjct: 419 SLGLFATPITDQGLVHLSGLTNLKKLDLQETSISDAGLVHLSHLAGLKVLDLEGTRITDA 478
Query: 316 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 365
GL HL GL LE + L T +SD L+ L GL+ L+ L + QIT+ G+
Sbjct: 479 GLIHLQGLNELEQLELDKTAVSDAGLKHLKGLTKLQFLQYEETQITEAGI 528
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 122/347 (35%), Positives = 179/347 (51%), Gaps = 19/347 (5%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
L G+ +TDS L ++ NLQ L+ N ISD GL HLRGLS L L + G
Sbjct: 140 LRGTTITDSDLKYVGALKNLQKLNLN-NTAISDAGLAHLRGLSELRVLELE-GTQLDGTG 197
Query: 124 MKAFAGLINLVKLDL-----------------ERCTRIHGGLVNLKGLMKLESLNIKWCN 166
+ L +L +LDL E +I + G +K +
Sbjct: 198 LVYLKHLNHLEELDLDNYNNNFVGWNDGESENEPRPQIRDAGLKHIGKLKHLKKLSLFGA 257
Query: 167 CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 226
I+D + L L L+SL+ + ++D G+A+LKGL LT L L+G V+ A L L+
Sbjct: 258 EISDVGLAHLQDLKKLESLEFARENISDKGVAHLKGLLNLTSLRLDGSRVSDAGLVHLAK 317
Query: 227 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 286
L L L+L +SD G ++ SLK L+L ++D+ L+HL L NLESL L S
Sbjct: 318 LQKLQSLDLGNTSISDTGLIHLQELTSLKSLDLSDTAVSDDGLIHLSRLQNLESLYLRST 377
Query: 287 GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG 346
+ GL +L L L+ L++ +++ GL ++ L +L+S+ L T I+D L L+G
Sbjct: 378 NLSGVGLSSLKNLSMLQYLDMGYSKMNDQGLIAVAELGSLDSLGLFATPITDQGLVHLSG 437
Query: 347 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
L++LK L+L I+D GL L+ L GL LDL G RITD+G +L+
Sbjct: 438 LTNLKKLDLQETSISDAGLVHLSHLAGLKVLDLEGTRITDAGLIHLQ 484
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 107/315 (33%), Positives = 160/315 (50%), Gaps = 20/315 (6%)
Query: 98 GLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
G E G L F ++ + A + L NL + L T GG ++ GL L
Sbjct: 77 GEEKFLGFMTAVELDFEFGE-LSEEDFIAISQLKNLKSIHLLITTIEEGGRKHITGLQNL 135
Query: 158 ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
E L+++ ITDSD+K + L NL+ L ++ + ++D+G+A+L+GL +L +L LEG +
Sbjct: 136 ELLSLR-GTTITDSDLKYVGALKNLQKLNLNNTAISDAGLAHLRGLSELRVLELEGTQLD 194
Query: 218 AACLDSLSALGSLFYLNLN------------------RCQLSDDGCEKFSKIGSLKVLNL 259
L L L L L+L+ R Q+ D G + K+ LK L+L
Sbjct: 195 GTGLVYLKHLNHLEELDLDNYNNNFVGWNDGESENEPRPQIRDAGLKHIGKLKHLKKLSL 254
Query: 260 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 319
EI+D L HL+ L LESL I D+G+ +L GL NL L L ++V +GL H
Sbjct: 255 FGAEISDVGLAHLQDLKKLESLEFARENISDKGVAHLKGLLNLTSLRLDGSRVSDAGLVH 314
Query: 320 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
L+ L L+S++L T ISD L L L+SLKSL+L ++D GL L+ L L L L
Sbjct: 315 LAKLQKLQSLDLGNTSISDTGLIHLQELTSLKSLDLSDTAVSDDGLIHLSRLQNLESLYL 374
Query: 380 FGARITDSGAAYLRS 394
++ G + L++
Sbjct: 375 RSTNLSGVGLSSLKN 389
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 99/192 (51%), Gaps = 32/192 (16%)
Query: 13 ELVYSRC--LTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDV 69
E +Y R L+ V L + ++ + LQ L +G Y +ND+ + +A GS L S+ L + +
Sbjct: 370 ESLYLRSTNLSGVGLSSLKNLSMLQYLDMG-YSKMNDQGLIAVAELGS-LDSLGLFATPI 427
Query: 70 TDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAG 129
TD GL+HL +NL+ LD ISD GL HL L+ G+K
Sbjct: 428 TDQGLVHLSGLTNLKKLDLQET-SISDAGLVHLSHLA----------------GLKV--- 467
Query: 130 LINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISC 189
LDLE GL++L+GL +LE L + ++D+ +K L GLT L+ LQ
Sbjct: 468 ------LDLEGTRITDAGLIHLQGLNELEQLELD-KTAVSDAGLKHLKGLTKLQFLQYEE 520
Query: 190 SKVTDSGIAYLK 201
+++T++GI L+
Sbjct: 521 TQITEAGINDLR 532
>gi|302853080|ref|XP_002958057.1| hypothetical protein VOLCADRAFT_99233 [Volvox carteri f.
nagariensis]
gi|300256635|gb|EFJ40897.1| hypothetical protein VOLCADRAFT_99233 [Volvox carteri f.
nagariensis]
Length = 581
Score = 171 bits (434), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 143/416 (34%), Positives = 216/416 (51%), Gaps = 37/416 (8%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCL-GQYPGVNDKWMDVIASQGSSLL 60
LP D+ Q++F+EL+ + + L FR+ L + L G+ ND+ + + S L
Sbjct: 41 LPADLVQRVFDELLAAGRFSLSDLTRFRELDLDTVVLVGRADVRNDRLRSL--EKCSRLR 98
Query: 61 SVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAI 119
S+DL+G V+D G+ L+ LQ L + C+ ++D L H+RGL+ L L R I
Sbjct: 99 SLDLTGCVQVSDVGVASLRRHGGLQRLRLSHCVTLTDAALNHVRGLTGLQELELRECELI 158
Query: 120 TAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGL 179
T +G+ +GL L LDL++C RI GGL +L L L +L + WC + DS++ L L
Sbjct: 159 TGEGLMQLSGLTQLKTLDLDQCRRIKGGLQHLTSLRHLATLRLGWCPLLGDSEVTWLREL 218
Query: 180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC 238
L+ L+++ ++VTD G+++L L LT L+L GC +T A L L +L L+L
Sbjct: 219 GQLRELRLAYTQVTDVGVSHLAALTALTHLDLGGCTRLTDAAAAPLQRLTALQVLSLY-- 276
Query: 239 QLSDDGCEKFSKIGSLKVLNLG----------FNEITDECLVHLKGLTNLESLNLDSCGI 288
GC +F G ++ + + +T L L L+ L L+LDSC +
Sbjct: 277 -----GCGQFGNAGLAMLIAVPLLSLNSLTLSYTAVTTPGLTALSSLSRLTLLSLDSCAV 331
Query: 289 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS---GLTNLESINLSFTG---------- 335
GD L L L L+LS+T VG GL L+ T+L + L++T
Sbjct: 332 GDAVCRVLRRLPRLANLDLSETSVGDGGLDALTVSGPPTSLTHLKLTYTKVNELGMPGKC 391
Query: 336 --ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 389
I+D L KL+ L L+ L+LD+ +TD L +T L+ LT LDLF RITD+GA
Sbjct: 392 VFITDEGLSKLSLLVGLQQLDLDSGTLTDACLRHVTGLSALTGLDLFSCRITDAGA 447
>gi|46447560|ref|YP_008925.1| hypothetical protein pc1926 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46401201|emb|CAF24650.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 761
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 146/427 (34%), Positives = 231/427 (54%), Gaps = 41/427 (9%)
Query: 4 RDISQQIFNELVYSRCLTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSV 62
+ I + F+ VY LT L A +DC L+ L L + D ++ + + ++L +
Sbjct: 194 KKIERLNFSNQVY---LTNAHLLALKDCKNLKALHLEACQALTDDGLEHL-TLLTALQHL 249
Query: 63 DLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
+LS ++TD+GL HL + LQ LD + C + +D GL +L L+ L L R + IT
Sbjct: 250 NLSRCKNLTDAGLAHLTPLTGLQYLDLSHCNKFTDAGLAYLEILTALQHLDLRGCDKITD 309
Query: 122 QGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
G+ L+ L L L +C + GL++LK L L+ LN+ CN +TD+ ++ L+ LT
Sbjct: 310 AGLSHLTPLVALQYLSLSQCWNLTDAGLIHLKPLTALQYLNLSRCNKLTDAGLEHLALLT 369
Query: 181 NLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGC------------PVTA--------- 218
+L+ L + SC K+TD+G+A+L L L L+L C P+TA
Sbjct: 370 SLQHLNLSSCKKLTDAGLAHLTPLMALQHLDLSICNKLTDRGLTHLNPLTALQYLNLSQC 429
Query: 219 -----ACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF-NEITDECLVH 271
A L+ L L +L YLNL++C+ L+D G E + + +L+ L+L + ++TD H
Sbjct: 430 DNITNAGLEHLIPLTALQYLNLSQCEKLTDAGLEHLTPLTALQQLDLSWCYKLTDAGFAH 489
Query: 272 LKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESI 329
L LT L+ L+L C + D GL +LT L L+ L+LS+ ++ GL HL+ L L+ +
Sbjct: 490 LTPLTGLQYLDLSHCNKLTDAGLAHLTPLTALQYLDLSNCIKLTDDGLAHLTPLMALQHL 549
Query: 330 NLSF-TGISDGSLRKLAGLSSLKSLNLDARQ-ITDTGLAALTSLTGLTHLDL-FGARITD 386
NLS ++D L+ L++L+ L+L Q +TD LA LT LT L LDL + +TD
Sbjct: 550 NLSSCYKLTDAGFAHLSPLTALQRLDLSYCQNLTDAELAHLTPLTALQRLDLRYCENLTD 609
Query: 387 SGAAYLR 393
+G +L+
Sbjct: 610 AGLVHLK 616
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 125/336 (37%), Positives = 196/336 (58%), Gaps = 10/336 (2%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
++TD+GLIHLK + LQ L+ + C +++D GLEHL L++L L+ +T G+
Sbjct: 331 NLTDAGLIHLKPLTALQYLNLSRCNKLTDAGLEHLALLTSLQHLNLSSCKKLTDAGLAHL 390
Query: 128 AGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
L+ L LDL C ++ GL +L L L+ LN+ C+ IT++ ++ L LT L+ L
Sbjct: 391 TPLMALQHLDLSICNKLTDRGLTHLNPLTALQYLNLSQCDNITNAGLEHLIPLTALQYLN 450
Query: 187 IS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDD 243
+S C K+TD+G+ +L L L L+L C +T A L+ L L YL+L+ C +L+D
Sbjct: 451 LSQCEKLTDAGLEHLTPLTALQQLDLSWCYKLTDAGFAHLTPLTGLQYLDLSHCNKLTDA 510
Query: 244 GCEKFSKIGSLKVLNLG-FNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCN 301
G + + +L+ L+L ++TD+ L HL L L+ LNL SC + D G +L+ L
Sbjct: 511 GLAHLTPLTALQYLDLSNCIKLTDDGLAHLTPLMALQHLNLSSCYKLTDAGFAHLSPLTA 570
Query: 302 LKCLELSDTQ-VGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-R 358
L+ L+LS Q + + L HL+ LT L+ ++L + ++D L L L+ L+ LNL
Sbjct: 571 LQRLDLSYCQNLTDAELAHLTPLTALQRLDLRYCENLTDAGLVHLKLLTDLQYLNLRGCG 630
Query: 359 QITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLR 393
+TD GLA LT+L+GL HLDL ++TD+G +L+
Sbjct: 631 YLTDAGLAHLTTLSGLQHLDLSSCEKLTDAGLVHLK 666
Score = 157 bits (398), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 135/347 (38%), Positives = 200/347 (57%), Gaps = 11/347 (3%)
Query: 58 SLLSVDLS-GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+L +DLS + +TD GL HL + LQ L+ + C I++ GLEHL L+ L L+ +
Sbjct: 395 ALQHLDLSICNKLTDRGLTHLNPLTALQYLNLSQCDNITNAGLEHLIPLTALQYLNLSQC 454
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
+T G++ L L +LDL C ++ G +L L L+ L++ CN +TD+ +
Sbjct: 455 EKLTDAGLEHLTPLTALQQLDLSWCYKLTDAGFAHLTPLTGLQYLDLSHCNKLTDAGLAH 514
Query: 176 LSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYL 233
L+ LT L+ L +S C K+TD G+A+L L L LNL C +T A LS L +L L
Sbjct: 515 LTPLTALQYLDLSNCIKLTDDGLAHLTPLMALQHLNLSSCYKLTDAGFAHLSPLTALQRL 574
Query: 234 NLNRCQ-LSDDGCEKFSKIGSLKVLNLGFNE-ITDECLVHLKGLTNLESLNLDSCG-IGD 290
+L+ CQ L+D + + +L+ L+L + E +TD LVHLK LT+L+ LNL CG + D
Sbjct: 575 DLSYCQNLTDAELAHLTPLTALQRLDLRYCENLTDAGLVHLKLLTDLQYLNLRGCGYLTD 634
Query: 291 EGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLS 348
GL +LT L L+ L+LS ++ +GL HL LT+L+ +NLS ++D L L L+
Sbjct: 635 AGLAHLTTLSGLQHLDLSSCEKLTDAGLVHLKLLTDLQYLNLSRCENLTDEGLALLTPLT 694
Query: 349 SLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGA-RITDSGAAYLR 393
+L+ L L +TD GLA LT LTGL LDL +TD+G +L+
Sbjct: 695 ALQHLKLRYCINLTDAGLAHLTPLTGLQRLDLSQCWNLTDAGLIHLK 741
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 119/339 (35%), Positives = 171/339 (50%), Gaps = 34/339 (10%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSD-VTDSGLIHLKDCSNLQSLDFNF 90
ALQ L L Q + + ++ + ++L ++LS + +TD+GL HL + LQ LD ++
Sbjct: 420 ALQYLNLSQCDNITNAGLEHLIPL-TALQYLNLSQCEKLTDAGLEHLTPLTALQQLDLSW 478
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLV 149
C +++D G HL L+ L L N +T G+ L L LDL C ++ GL
Sbjct: 479 CYKLTDAGFAHLTPLTGLQYLDLSHCNKLTDAGLAHLTPLTALQYLDLSNCIKLTDDGLA 538
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTL 208
+L LM L+ LN+ C +TD+ LS LT L+ L +S C +TD+ +A+L L L
Sbjct: 539 HLTPLMALQHLNLSSCYKLTDAGFAHLSPLTALQRLDLSYCQNLTDAELAHLTPLTALQR 598
Query: 209 LNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNE-IT 265
L+L C +T A L L L L YLNL C L+D G + + L+ L+L E +T
Sbjct: 599 LDLRYCENLTDAGLVHLKLLTDLQYLNLRGCGYLTDAGLAHLTTLSGLQHLDLSSCEKLT 658
Query: 266 DECLVHLKGLTNLESLNLDSC--------------------------GIGDEGLVNLTGL 299
D LVHLK LT+L+ LNL C + D GL +LT L
Sbjct: 659 DAGLVHLKLLTDLQYLNLSRCENLTDEGLALLTPLTALQHLKLRYCINLTDAGLAHLTPL 718
Query: 300 CNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSFTGIS 337
L+ L+LS + +GL HL LT L+ +NLS T IS
Sbjct: 719 TGLQRLDLSQCWNLTDAGLIHLKLLTALQHLNLSDTNIS 757
>gi|46447144|ref|YP_008509.1| hypothetical protein pc1510 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400785|emb|CAF24234.1| hypothetical protein pc1510 [Candidatus Protochlamydia amoebophila
UWE25]
Length = 670
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 131/337 (38%), Positives = 185/337 (54%), Gaps = 10/337 (2%)
Query: 65 SGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM 124
+ +TD+ L+ LK C NL+ L C ++D GL HL L L L + + +T G+
Sbjct: 275 ENAHLTDAHLLALKTCKNLKVLYLKKCCNLTDAGLPHLTPLVALQYLDLSKCHNLTDAGL 334
Query: 125 KAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
L L L L C + GL +LK L+ L+ LN+ CN TD+ + L+ L LK
Sbjct: 335 THLTFLDALNYLGLGECYNLTDTGLAHLKSLINLQHLNLNNCN-FTDAGLAHLTPLVTLK 393
Query: 184 SLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQLS 241
L +S C +TD+G+A+L L L LNL C +T L LS L +L +LNLN C+L
Sbjct: 394 YLNLSQCYNLTDAGLAHLTPLVNLQQLNLSDCTNLTDTGLAYLSPLVTLQHLNLNVCKLI 453
Query: 242 DDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGL 299
D G + + +L+ LNL + +TD L HL L L+ L+LD C + D GL +LT L
Sbjct: 454 DAGLAHLTPLVNLQQLNLSYCTNLTDAGLAHLSTLVTLQHLDLDGCYKLTDIGLAHLTPL 513
Query: 300 CNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNL-D 356
LK L LS + +GL HL+ L L+ ++LS+ G + D L L L +LK L+L +
Sbjct: 514 VTLKYLNLSCCHNLTGAGLAHLTPLVALKHLDLSWNGDLEDAGLAHLTPLVALKYLDLSE 573
Query: 357 ARQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYL 392
+TD GLA L SL L HLDL G ++TD+G A+L
Sbjct: 574 CYHLTDAGLAHLRSLVALKHLDLRGCYQLTDAGIAHL 610
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 130/335 (38%), Positives = 185/335 (55%), Gaps = 8/335 (2%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
++TD+GL HL LQ LD + C ++D GL HL L L L +T G+
Sbjct: 303 NLTDAGLPHLTPLVALQYLDLSKCHNLTDAGLTHLTFLDALNYLGLGECYNLTDTGLAHL 362
Query: 128 AGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
LINL L+L C GL +L L+ L+ LN+ C +TD+ + L+ L NL+ L +
Sbjct: 363 KSLINLQHLNLNNCNFTDAGLAHLTPLVTLKYLNLSQCYNLTDAGLAHLTPLVNLQQLNL 422
Query: 188 S-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC-QLSDDGC 245
S C+ +TD+G+AYL L L LNL C + A L L+ L +L LNL+ C L+D G
Sbjct: 423 SDCTNLTDTGLAYLSPLVTLQHLNLNVCKLIDAGLAHLTPLVNLQQLNLSYCTNLTDAGL 482
Query: 246 EKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLK 303
S + +L+ L+L G ++TD L HL L L+ LNL C + GL +LT L LK
Sbjct: 483 AHLSTLVTLQHLDLDGCYKLTDIGLAHLTPLVTLKYLNLSCCHNLTGAGLAHLTPLVALK 542
Query: 304 CLELS-DTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQI 360
L+LS + + +GL HL+ L L+ ++LS ++D L L L +LK L+L Q+
Sbjct: 543 HLDLSWNGDLEDAGLAHLTPLVALKYLDLSECYHLTDAGLAHLRSLVALKHLDLRGCYQL 602
Query: 361 TDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRS 394
TD G+A LT L L +LDL G +TD+G A+L S
Sbjct: 603 TDAGIAHLTPLVALKYLDLKGCPNLTDAGLAHLTS 637
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 103/301 (34%), Positives = 159/301 (52%), Gaps = 7/301 (2%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
+L ++L+ + TD+GL HL L+ L+ + C ++D GL HL L NL L+
Sbjct: 367 NLQHLNLNNCNFTDAGLAHLTPLVTLKYLNLSQCYNLTDAGLAHLTPLVNLQQLNLSDCT 426
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
+T G+ + L+ L L+L C I GL +L L+ L+ LN+ +C +TD+ + LS
Sbjct: 427 NLTDTGLAYLSPLVTLQHLNLNVCKLIDAGLAHLTPLVNLQQLNLSYCTNLTDAGLAHLS 486
Query: 178 GLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNL 235
L L+ L + C K+TD G+A+L L L LNL C +T A L L+ L +L +L+L
Sbjct: 487 TLVTLQHLDLDGCYKLTDIGLAHLTPLVTLKYLNLSCCHNLTGAGLAHLTPLVALKHLDL 546
Query: 236 N-RCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEG 292
+ L D G + + +LK L+L +TD L HL+ L L+ L+L C + D G
Sbjct: 547 SWNGDLEDAGLAHLTPLVALKYLDLSECYHLTDAGLAHLRSLVALKHLDLRGCYQLTDAG 606
Query: 293 LVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSL 350
+ +LT L LK L+L + +GL HL+ L L+ + L I+D L LA +L
Sbjct: 607 IAHLTPLVALKYLDLKGCPNLTDAGLAHLTSLIALQDLELPNCQRITDAGLAHLASSMTL 666
Query: 351 K 351
+
Sbjct: 667 R 667
>gi|46446666|ref|YP_008031.1| hypothetical protein pc1032 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400307|emb|CAF23756.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 734
Score = 164 bits (416), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 141/384 (36%), Positives = 211/384 (54%), Gaps = 12/384 (3%)
Query: 20 LTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSD-VTDSGLIHL 77
LT+ L ++C L+ L + GV D + + + ++L +DLS + +TD GL HL
Sbjct: 237 LTDAHLLTLKNCKNLKILHFKKCWGVTDAGLAHL-TPLTTLQYLDLSDCEKLTDDGLAHL 295
Query: 78 KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLD 137
+ LQ LD ++C ++D GL HL L+ L L+ R + G+ L L L+
Sbjct: 296 TPLTGLQHLDLSWCSSLTDAGLAHLTPLTALQHLNLNRCEYLKDAGLAHLTPLTGLQHLN 355
Query: 138 LERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDS 195
L RC + GL +LK L L+ LN+ C +TD+ + L+ LT L+ L +S C+ +TD+
Sbjct: 356 LNRCKDLTDAGLSHLKPLTALQHLNLSECWKLTDAGLAHLTPLTALQHLDLSRCNSLTDA 415
Query: 196 GIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGS 253
G+A+L L L L+L C T A L L++L L YLNL+ + L+D G + + +
Sbjct: 416 GLAHLTPLTALQHLDLSDCQNFTDAGLAHLTSLTGLQYLNLSEYKNLTDAGLAHLTPLTA 475
Query: 254 LKVLNL-GFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-T 310
L+ LNL + TD L HL LT L+ L+L C + D+GL +L L L+ L LS
Sbjct: 476 LQHLNLCNCRKFTDNGLAHLTPLTALQHLDLSHCKNLTDDGLAHLAPLTGLQRLVLSWCD 535
Query: 311 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALT 369
++ +GL HL+ LT L+ ++LS I+D L L L+ L+ L L Q+TD GLA LT
Sbjct: 536 KLTDAGLAHLTPLTALQYLDLSCCEITDAGLAHLTPLTGLQHLVLVYCWQLTDAGLAHLT 595
Query: 370 SLTGLTHLDLFGA-RITDSGAAYL 392
LT L +L L R+TD+G A+L
Sbjct: 596 PLTTLQYLYLGSCNRLTDAGLAHL 619
Score = 164 bits (415), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 126/353 (35%), Positives = 186/353 (52%), Gaps = 32/353 (9%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
D+TD+GL HLK + LQ L+ + C +++D GL HL L+ L L R N++T G+
Sbjct: 361 DLTDAGLSHLKPLTALQHLNLSECWKLTDAGLAHLTPLTALQHLDLSRCNSLTDAGLAHL 420
Query: 128 AGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
L L LDL C GL +L L L+ LN+ +TD+ + L+ LT L+ L
Sbjct: 421 TPLTALQHLDLSDCQNFTDAGLAHLTSLTGLQYLNLSEYKNLTDAGLAHLTPLTALQHLN 480
Query: 187 I-SCSKVTDSGIAYLKGLQKLTLLNLEGC------------PVTA--------------A 219
+ +C K TD+G+A+L L L L+L C P+T A
Sbjct: 481 LCNCRKFTDNGLAHLTPLTALQHLDLSHCKNLTDDGLAHLAPLTGLQRLVLSWCDKLTDA 540
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNL 278
L L+ L +L YL+L+ C+++D G + + L+ L L + ++TD L HL LT L
Sbjct: 541 GLAHLTPLTALQYLDLSCCEITDAGLAHLTPLTGLQHLVLVYCWQLTDAGLAHLTPLTTL 600
Query: 279 ESLNLDSCG-IGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSF-TG 335
+ L L SC + D GL +L L L+ L L+D ++ +GL HL+ LT L+ + L+
Sbjct: 601 QYLYLGSCNRLTDAGLAHLAPLTALQHLALNDCRKLTDTGLAHLTPLTALQHLTLNRCEK 660
Query: 336 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 388
++D L L L++L+ L+L +ITD GLA LT L L LDL+G ITD G
Sbjct: 661 LTDDGLAHLKPLAALQYLDLSYCEITDAGLAHLTHLMALQRLDLYGREITDDG 713
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 131/355 (36%), Positives = 187/355 (52%), Gaps = 33/355 (9%)
Query: 71 DSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL 130
D+GL HL + LQ L+ N C ++D GL HL+ L+ L L+ +T G+ L
Sbjct: 339 DAGLAHLTPLTGLQHLNLNRCKDLTDAGLSHLKPLTALQHLNLSECWKLTDAGLAHLTPL 398
Query: 131 INLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISC 189
L LDL RC + GL +L L L+ L++ C TD+ + L+ LT L+ L +S
Sbjct: 399 TALQHLDLSRCNSLTDAGLAHLTPLTALQHLDLSDCQNFTDAGLAHLTSLTGLQYLNLSE 458
Query: 190 SK-VTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCE 246
K +TD+G+A+L L L LNL C T L L+ L +L +L+L+ C+ L+DDG
Sbjct: 459 YKNLTDAGLAHLTPLTALQHLNLCNCRKFTDNGLAHLTPLTALQHLDLSHCKNLTDDGLA 518
Query: 247 KFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 305
+ + L+ L L + +++TD L HL LT L+ L+L C I D GL +LT L L+ L
Sbjct: 519 HLAPLTGLQRLVLSWCDKLTDAGLAHLTPLTALQYLDLSCCEITDAGLAHLTPLTGLQHL 578
Query: 306 ELSD-TQVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNL-DARQITD 362
L Q+ +GL HL+ LT L+ + L S ++D L LA L++L+ L L D R++TD
Sbjct: 579 VLVYCWQLTDAGLAHLTPLTTLQYLYLGSCNRLTDAGLAHLAPLTALQHLALNDCRKLTD 638
Query: 363 TGLAALTSLTGLTHL-------------------------DLFGARITDSGAAYL 392
TGLA LT LT L HL DL ITD+G A+L
Sbjct: 639 TGLAHLTPLTALQHLTLNRCEKLTDDGLAHLKPLAALQYLDLSYCEITDAGLAHL 693
Score = 157 bits (397), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 129/367 (35%), Positives = 193/367 (52%), Gaps = 11/367 (2%)
Query: 17 SRC--LTEVSLEAFRD-CALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDS 72
+RC LT+ L + ALQ L L + + D + + + ++L +DLS + +TD+
Sbjct: 357 NRCKDLTDAGLSHLKPLTALQHLNLSECWKLTDAGLAHL-TPLTALQHLDLSRCNSLTDA 415
Query: 73 GLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLIN 132
GL HL + LQ LD + C +D GL HL L+ L L+ +T G+ L
Sbjct: 416 GLAHLTPLTALQHLDLSDCQNFTDAGLAHLTSLTGLQYLNLSEYKNLTDAGLAHLTPLTA 475
Query: 133 LVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CS 190
L L+L C + GL +L L L+ L++ C +TD + L+ LT L+ L +S C
Sbjct: 476 LQHLNLCNCRKFTDNGLAHLTPLTALQHLDLSHCKNLTDDGLAHLAPLTGLQRLVLSWCD 535
Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFS 249
K+TD+G+A+L L L L+L C +T A L L+ L L +L L C QL+D G +
Sbjct: 536 KLTDAGLAHLTPLTALQYLDLSCCEITDAGLAHLTPLTGLQHLVLVYCWQLTDAGLAHLT 595
Query: 250 KIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLEL 307
+ +L+ L LG N +TD L HL LT L+ L L+ C + D GL +LT L L+ L L
Sbjct: 596 PLTTLQYLYLGSCNRLTDAGLAHLAPLTALQHLALNDCRKLTDTGLAHLTPLTALQHLTL 655
Query: 308 SD-TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 366
+ ++ GL HL L L+ ++LS+ I+D L L L +L+ L+L R+ITD GL
Sbjct: 656 NRCEKLTDDGLAHLKPLAALQYLDLSYCEITDAGLAHLTHLMALQRLDLYGREITDDGLE 715
Query: 367 ALTSLTG 373
+L
Sbjct: 716 RFETLAA 722
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 106/296 (35%), Positives = 145/296 (48%), Gaps = 59/296 (19%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGC 214
K+E+LN +TD+ + L NLK L C VTD+G+A+L L L L+L C
Sbjct: 225 KIETLNFSENARLTDAHLLTLKNCKNLKILHFKKCWGVTDAGLAHLTPLTTLQYLDLSDC 284
Query: 215 ------------PVTA--------------ACLDSLSALGSLFYLNLNRCQ-LSDDGCEK 247
P+T A L L+ L +L +LNLNRC+ L D G
Sbjct: 285 EKLTDDGLAHLTPLTGLQHLDLSWCSSLTDAGLAHLTPLTALQHLNLNRCEYLKDAGLAH 344
Query: 248 FSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-------------------- 286
+ + L+ LNL ++TD L HLK LT L+ LNL C
Sbjct: 345 LTPLTGLQHLNLNRCKDLTDAGLSHLKPLTALQHLNLSECWKLTDAGLAHLTPLTALQHL 404
Query: 287 ------GIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLS-FTGISD 338
+ D GL +LT L L+ L+LSD Q +GL HL+ LT L+ +NLS + ++D
Sbjct: 405 DLSRCNSLTDAGLAHLTPLTALQHLDLSDCQNFTDAGLAHLTSLTGLQYLNLSEYKNLTD 464
Query: 339 GSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYL 392
L L L++L+ LNL + R+ TD GLA LT LT L HLDL + +TD G A+L
Sbjct: 465 AGLAHLTPLTALQHLNLCNCRKFTDNGLAHLTPLTALQHLDLSHCKNLTDDGLAHL 520
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 60/119 (50%), Gaps = 1/119 (0%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TD+GL HL + LQ L N C +++D GL HL L+ L L+ R +T G+
Sbjct: 611 LTDAGLAHLAPLTALQHLALNDCRKLTDTGLAHLTPLTALQHLTLNRCEKLTDDGLAHLK 670
Query: 129 GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
L L LDL C GL +L LM L+ L++ + ITD ++ L +L+I
Sbjct: 671 PLAALQYLDLSYCEITDAGLAHLTHLMALQRLDL-YGREITDDGLERFETLAASFNLEI 728
>gi|46446377|ref|YP_007742.1| hypothetical protein pc0743 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400018|emb|CAF23467.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 765
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 138/388 (35%), Positives = 211/388 (54%), Gaps = 13/388 (3%)
Query: 13 ELVYSR--CLTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDV 69
EL +S+ LT+ L A ++C L+ L L + D + + ++L +DLSG ++
Sbjct: 262 ELNFSKNAHLTDAHLLALKNCENLKVLNLQACHNLTDAGLAHLTPL-AALKHLDLSGCEL 320
Query: 70 TDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAG 129
TD GL+HL + LQ LD + C +D GL HL+ L L L+ +T G+
Sbjct: 321 TDDGLVHLTPLAALQHLDLSHCRNFTDAGLAHLKLLVALQHLNLSHCGKLTDAGLAHLKL 380
Query: 130 LINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
L+ L LDL C GL +LK L+ L+ LN+ +C +TD+ + L+ L L+ L ++
Sbjct: 381 LVALQHLDLSHCRNFTDAGLAHLKLLVALQHLNLSYCGNLTDAGLAHLTPLMALQHLDLN 440
Query: 189 -CSKVTDSGIAYLKGLQKLTLLNLE-GCPVTAACLDSLSALGSLFYLNLNRC-QLSDDGC 245
C +TD+G+ +L L L LNL T A L L+ L +L +LNL+ C +D G
Sbjct: 441 GCHNLTDAGLTHLTSLVVLQYLNLSWNYNFTDAGLAHLTPLMALQHLNLSYCGNFTDAGL 500
Query: 246 EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKC 304
+ + +LK L+L E+TD+ L HLK L L+ LNL CG + D+GL +L L L+
Sbjct: 501 AHLTSLAALKHLDLIGCELTDDGLAHLKLLVALQHLNLSYCGKLTDDGLAHLKLLVALQH 560
Query: 305 LELSD-TQVGSSGLRHLSGLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLDA-RQIT 361
L+LS ++ +GL HL L L+ +NLS G ++D L L L++L+ L+L ++T
Sbjct: 561 LDLSGCDKLTGAGLAHLKFLVALQHLNLSHCGKLTDDGLVNLTPLAALRHLDLSHCGKLT 620
Query: 362 DTGLAALTSLTGLTHLDL-FGARITDSG 388
GLA L L L HL+L ++TD+G
Sbjct: 621 GAGLAHLKFLVALQHLNLSHCGKLTDAG 648
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 122/332 (36%), Positives = 181/332 (54%), Gaps = 10/332 (3%)
Query: 58 SLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+L +DL+G ++TD+GL HL LQ L+ ++ +D GL HL L L L+
Sbjct: 433 ALQHLDLNGCHNLTDAGLTHLTSLVVLQYLNLSWNYNFTDAGLAHLTPLMALQHLNLSYC 492
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
T G+ L L LDL C GL +LK L+ L+ LN+ +C +TD + L
Sbjct: 493 GNFTDAGLAHLTSLAALKHLDLIGCELTDDGLAHLKLLVALQHLNLSYCGKLTDDGLAHL 552
Query: 177 SGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLN 234
L L+ L +S C K+T +G+A+LK L L LNL C +T L +L+ L +L +L+
Sbjct: 553 KLLVALQHLDLSGCDKLTGAGLAHLKFLVALQHLNLSHCGKLTDDGLVNLTPLAALRHLD 612
Query: 235 LNRC-QLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCG-IGDE 291
L+ C +L+ G + +L+ LNL ++TD LV+L L L+ L+L CG + D
Sbjct: 613 LSHCGKLTGAGLAHLKFLVALQHLNLSHCGKLTDAGLVNLSPLMALQHLDLSHCGNLTDA 672
Query: 292 GLVNLTGLCNLKCLELSDT-QVGSSGLRHLSGLTNLESINLSFTG-ISDGSLRKLAGLSS 349
GLVNL+ L L+ L+LS + GL +L L L+ ++LS G ++D L L+ L +
Sbjct: 673 GLVNLSPLMALQHLDLSHCGNLTDDGLVNLKFLVALQHLDLSHCGNLTDDGLAHLSPLIA 732
Query: 350 LKSLNLDA-RQITD-TGLAALTSLTGLTHLDL 379
L+ L+ +TD +GLA LTSL L HLDL
Sbjct: 733 LQHLDRSKYNNLTDGSGLAHLTSLVDLQHLDL 764
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 113/333 (33%), Positives = 164/333 (49%), Gaps = 54/333 (16%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
+ +TD+ L+ LK+C NL+ L+ C ++D GL HL L+ L
Sbjct: 269 AHLTDAHLLALKNCENLKVLNLQACHNLTDAGLAHLTPLAALK----------------- 311
Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
LDL C GLV+L L L+ L++ C TD+ + L L L+ L
Sbjct: 312 --------HLDLSGCELTDDGLVHLTPLAALQHLDLSHCRNFTDAGLAHLKLLVALQHLN 363
Query: 187 IS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQLSDDG 244
+S C K+TD+G+A+LK L L L+L C T A L L L +L +LNL+ C
Sbjct: 364 LSHCGKLTDAGLAHLKLLVALQHLDLSHCRNFTDAGLAHLKLLVALQHLNLSYC------ 417
Query: 245 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLK 303
+TD L HL L L+ L+L+ C + D GL +LT L L+
Sbjct: 418 -----------------GNLTDAGLAHLTPLMALQHLDLNGCHNLTDAGLTHLTSLVVLQ 460
Query: 304 CLELS-DTQVGSSGLRHLSGLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLDARQIT 361
L LS + +GL HL+ L L+ +NLS+ G +D L L L++LK L+L ++T
Sbjct: 461 YLNLSWNYNFTDAGLAHLTPLMALQHLNLSYCGNFTDAGLAHLTSLAALKHLDLIGCELT 520
Query: 362 DTGLAALTSLTGLTHLDL-FGARITDSGAAYLR 393
D GLA L L L HL+L + ++TD G A+L+
Sbjct: 521 DDGLAHLKLLVALQHLNLSYCGKLTDDGLAHLK 553
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 102/273 (37%), Positives = 156/273 (57%), Gaps = 9/273 (3%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+ TD+GL HL + L+ LD C +++D GL HL+ L L L+ +T G+
Sbjct: 494 NFTDAGLAHLTSLAALKHLDLIGC-ELTDDGLAHLKLLVALQHLNLSYCGKLTDDGLAHL 552
Query: 128 AGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
L+ L LDL C ++ G GL +LK L+ L+ LN+ C +TD + L+ L L+ L
Sbjct: 553 KLLVALQHLDLSGCDKLTGAGLAHLKFLVALQHLNLSHCGKLTDDGLVNLTPLAALRHLD 612
Query: 187 IS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDD 243
+S C K+T +G+A+LK L L LNL C +T A L +LS L +L +L+L+ C L+D
Sbjct: 613 LSHCGKLTGAGLAHLKFLVALQHLNLSHCGKLTDAGLVNLSPLMALQHLDLSHCGNLTDA 672
Query: 244 GCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCN 301
G S + +L+ L+L +TD+ LV+LK L L+ L+L CG + D+GL +L+ L
Sbjct: 673 GLVNLSPLMALQHLDLSHCGNLTDDGLVNLKFLVALQHLDLSHCGNLTDDGLAHLSPLIA 732
Query: 302 LKCLELSDTQ--VGSSGLRHLSGLTNLESINLS 332
L+ L+ S SGL HL+ L +L+ ++LS
Sbjct: 733 LQHLDRSKYNNLTDGSGLAHLTSLVDLQHLDLS 765
>gi|168701673|ref|ZP_02733950.1| leucine-rich repeat domain protein [Gemmata obscuriglobus UQM 2246]
Length = 367
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 122/339 (35%), Positives = 182/339 (53%), Gaps = 28/339 (8%)
Query: 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
G + V LS + VTD GL L NL L+ F ++D G++ L GL LT+L
Sbjct: 48 GRPVTKVYLSFTRVTDKGLKELAGLKNLTHLNL-FSTWVTDAGVKELAGLKGLTTLDLN- 105
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
+ ++T GMK A L NL L R+ G KG +TD+ +K
Sbjct: 106 STSVTDAGMKELAALNNLTTL------RLSG-----KG--------------VTDAGLKE 140
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
L+ L L +L +S +KVTD+G+ L L+ LT + L VT A L L+AL L L+L
Sbjct: 141 LAALKKLANLDLSHTKVTDAGLKELAALKGLTTIRLNNTEVTDAGLKELAALKKLADLDL 200
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
++ +++D G ++ + + L L L ++TD L L GL NL L+L + D GL
Sbjct: 201 SQTKVTDAGLKELAALKGLTCLGLLGTKVTDAGLKELAGL-NLTDLHLAGTPVTDAGLKE 259
Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355
L L NL L L T+V GL+ LSGL L ++ L+ T ++D +++L+GL L +L+L
Sbjct: 260 LAALKNLTHLYLFGTKVTGVGLKELSGLKGLTTLYLNNTKVTDAGVKELSGLKGLTTLDL 319
Query: 356 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRS 394
++TD G+ AL L GLT+L+L+G ++TD+G L S
Sbjct: 320 SYTEMTDAGVKALAGLKGLTNLELYGTKVTDAGVKELNS 358
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 108/330 (32%), Positives = 162/330 (49%), Gaps = 29/330 (8%)
Query: 41 YPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLE 100
+ V DK + +A +L ++L + VTD+G+ L L +LD N ++D G++
Sbjct: 58 FTRVTDKGLKELAGL-KNLTHLNLFSTWVTDAGVKELAGLKGLTTLDLN-STSVTDAGMK 115
Query: 101 HLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 160
L L+NLT+L +T G+K A L L LDL GL L L L ++
Sbjct: 116 ELAALNNLTTLRL-SGKGVTDAGLKELAALKKLANLDLSHTKVTDAGLKELAALKGLTTI 174
Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 220
+ +TD+ +K L+ L L L +S +KVTD+G+ L L+ LT L L G VT A
Sbjct: 175 RLNNTE-VTDAGLKELAALKKLADLDLSQTKVTDAGLKELAALKGLTCLGLLGTKVTDAG 233
Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 280
L L+ L L+D L+L +TD L L L NL
Sbjct: 234 LKELAGL-----------NLTD--------------LHLAGTPVTDAGLKELAALKNLTH 268
Query: 281 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 340
L L + GL L+GL L L L++T+V +G++ LSGL L +++LS+T ++D
Sbjct: 269 LYLFGTKVTGVGLKELSGLKGLTTLYLNNTKVTDAGVKELSGLKGLTTLDLSYTEMTDAG 328
Query: 341 LRKLAGLSSLKSLNLDARQITDTGLAALTS 370
++ LAGL L +L L ++TD G+ L S
Sbjct: 329 VKALAGLKGLTNLELYGTKVTDAGVKELNS 358
>gi|46447549|ref|YP_008914.1| hypothetical protein pc1915 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46401190|emb|CAF24639.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 683
Score = 161 bits (407), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 133/360 (36%), Positives = 188/360 (52%), Gaps = 35/360 (9%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
++TD+GL HL + LQ LD + C ++D GL HL L+ L L R IT G+
Sbjct: 286 NLTDAGLAHLAPLTALQYLDLSHCRNLTDTGLAHLTPLTALQHLDLRVCKNITDAGLAHL 345
Query: 128 AGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
A L L LDL C + GL L L L+ LN+ +C +TD+ + L LT L++L
Sbjct: 346 APLTALQNLDLSDCGHLTDAGLAYLTPLTALQHLNLYFCFNLTDAGLVHLRPLTALQTLG 405
Query: 187 IS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQ-LSDD 243
+S C +TD+G+A+L L L LNL C +T A L L+ L +L +LNL+ C+ L+DD
Sbjct: 406 LSQCWNLTDTGLAHLTPLTALQHLNLSRCYKLTDAGLAHLTPLTALQHLNLSYCENLTDD 465
Query: 244 GCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCN 301
G + + +L+ L L ++TD L HL LT L+ LNL C + D GL LT L
Sbjct: 466 GLAHLAPLTALQYLRLSQCWKLTDAGLAHLTPLTALQHLNLSRCYKLTDAGLARLTPLTA 525
Query: 302 LKCLELSD----TQVGSSGLRHLSGLTNLESINLSF-----------------------T 334
L+ L+L T G + L LSGL +L N +
Sbjct: 526 LQHLDLKYCINLTDAGLARLTPLSGLQHLALTNCKYLTDAGLAHLTLLTALQYLALANCK 585
Query: 335 GISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYL 392
++D L L L++L+ L+L + R +TD GLA LT LTGL HL+L R +TD+G A+L
Sbjct: 586 NLTDVGLAHLTPLTALQHLDLSECRHLTDAGLAHLTPLTGLQHLNLSWCRNLTDAGLAHL 645
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 126/333 (37%), Positives = 187/333 (56%), Gaps = 10/333 (3%)
Query: 66 GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMK 125
+ +TD+ L+ LK+C NL+ L C ++D GL HL L+ L L+ +T G+
Sbjct: 234 NAHLTDAHLLVLKNCKNLKVLYLQGCRNLTDAGLAHLTPLTGLQHLNLSWCRNLTDAGLA 293
Query: 126 AFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A L L LDL C + GL +L L L+ L+++ C ITD+ + L+ LT L++
Sbjct: 294 HLAPLTALQYLDLSHCRNLTDTGLAHLTPLTALQHLDLRVCKNITDAGLAHLAPLTALQN 353
Query: 185 LQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLS 241
L +S C +TD+G+AYL L L LNL C +T A L L L +L L L++C L+
Sbjct: 354 LDLSDCGHLTDAGLAYLTPLTALQHLNLYFCFNLTDAGLVHLRPLTALQTLGLSQCWNLT 413
Query: 242 DDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGL 299
D G + + +L+ LNL ++TD L HL LT L+ LNL C + D+GL +L L
Sbjct: 414 DTGLAHLTPLTALQHLNLSRCYKLTDAGLAHLTPLTALQHLNLSYCENLTDDGLAHLAPL 473
Query: 300 CNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA 357
L+ L LS ++ +GL HL+ LT L+ +NLS ++D L +L L++L+ L+L
Sbjct: 474 TALQYLRLSQCWKLTDAGLAHLTPLTALQHLNLSRCYKLTDAGLARLTPLTALQHLDLKY 533
Query: 358 -RQITDTGLAALTSLTGLTHLDLFGAR-ITDSG 388
+TD GLA LT L+GL HL L + +TD+G
Sbjct: 534 CINLTDAGLARLTPLSGLQHLALTNCKYLTDAG 566
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 125/360 (34%), Positives = 189/360 (52%), Gaps = 35/360 (9%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
++TD+GL HL + LQ L+ ++C ++D GL HL L+ L L +T G+
Sbjct: 261 NLTDAGLAHLTPLTGLQHLNLSWCRNLTDAGLAHLAPLTALQYLDLSHCRNLTDTGLAHL 320
Query: 128 AGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
L L LDL C I GL +L L L++L++ C +TD+ + L+ LT L+ L
Sbjct: 321 TPLTALQHLDLRVCKNITDAGLAHLAPLTALQNLDLSDCGHLTDAGLAYLTPLTALQHLN 380
Query: 187 IS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDD 243
+ C +TD+G+ +L+ L L L L C +T L L+ L +L +LNL+RC +L+D
Sbjct: 381 LYFCFNLTDAGLVHLRPLTALQTLGLSQCWNLTDTGLAHLTPLTALQHLNLSRCYKLTDA 440
Query: 244 GCEKFSKIGSLKVLNLGFNE-ITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCN 301
G + + +L+ LNL + E +TD+ L HL LT L+ L L C + D GL +LT L
Sbjct: 441 GLAHLTPLTALQHLNLSYCENLTDDGLAHLAPLTALQYLRLSQCWKLTDAGLAHLTPLTA 500
Query: 302 LKCLELSD-TQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNL---- 355
L+ L LS ++ +GL L+ LT L+ ++L + ++D L +L LS L+ L L
Sbjct: 501 LQHLNLSRCYKLTDAGLARLTPLTALQHLDLKYCINLTDAGLARLTPLSGLQHLALTNCK 560
Query: 356 ----------------------DARQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYL 392
+ + +TD GLA LT LT L HLDL R +TD+G A+L
Sbjct: 561 YLTDAGLAHLTLLTALQYLALANCKNLTDVGLAHLTPLTALQHLDLSECRHLTDAGLAHL 620
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 78/171 (45%), Gaps = 29/171 (16%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG----- 123
+TD+GL L + LQ LD +CI ++D GL L LS L L+ +T G
Sbjct: 512 LTDAGLARLTPLTALQHLDLKYCINLTDAGLARLTPLSGLQHLALTNCKYLTDAGLAHLT 571
Query: 124 --------------------MKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNI 162
+ L L LDL C + GL +L L L+ LN+
Sbjct: 572 LLTALQYLALANCKNLTDVGLAHLTPLTALQHLDLSECRHLTDAGLAHLTPLTGLQHLNL 631
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLE 212
WC +TD+ + LS L+ L+ L +S CS++TD G+ K L T LNLE
Sbjct: 632 SWCRNLTDAGLAHLSPLSVLQHLALSQCSRLTDDGLDRFKTLA--TSLNLE 680
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 57 SSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
++L +DLS +TD+GL HL + LQ L+ ++C ++D GL HL LS L L+ +
Sbjct: 599 TALQHLDLSECRHLTDAGLAHLTPLTGLQHLNLSWCRNLTDAGLAHLSPLSVLQHLALSQ 658
Query: 116 NNAITAQGMKAFAGLINLVKLDLER 140
+ +T G+ F L + L++ R
Sbjct: 659 CSRLTDDGLDRFKTLATSLNLEIVR 683
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 41/77 (53%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
++TD GL HL + LQ LD + C ++D GL HL L+ L L+ +T G+
Sbjct: 586 NLTDVGLAHLTPLTALQHLDLSECRHLTDAGLAHLTPLTGLQHLNLSWCRNLTDAGLAHL 645
Query: 128 AGLINLVKLDLERCTRI 144
+ L L L L +C+R+
Sbjct: 646 SPLSVLQHLALSQCSRL 662
>gi|283780172|ref|YP_003370927.1| hypothetical protein Psta_2397 [Pirellula staleyi DSM 6068]
gi|283438625|gb|ADB17067.1| leucine-rich repeat cysteine-containing subtype [Pirellula staleyi
DSM 6068]
Length = 443
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 112/326 (34%), Positives = 179/326 (54%), Gaps = 26/326 (7%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
VTD+GL +L L+ L ++D G+EHL L L + +R + +T++G ++ A
Sbjct: 107 VTDAGLANLDGHPTLRILVLELS-SVTDAGMEHLTKLPALEDIQLKRCD-LTSKGYESLA 164
Query: 129 GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
+ L ++ + L +K + +LE L+++ CN +T++ + PL+G+T LKSL+I
Sbjct: 165 KIKTLRRIRAPQTNFNDDCLAAIKDMSQLELLDLQDCNQVTEAGLAPLAGMTKLKSLRIY 224
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 248
+TD+ + Y+K + L L+LE +A +D + +G L
Sbjct: 225 GPTITDTVMGYIKDCKNLASLSLEQ---SAVGVDGMKVIGGL------------------ 263
Query: 249 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 308
SK+ LK+ G + +TD+ L + GL +LE L L S +G+V+L G+ LK L+LS
Sbjct: 264 SKLKELKLY--GASNVTDDALAQIAGLKDLEILELRSTTTTSKGMVHLAGMSKLKLLDLS 321
Query: 309 DT-QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 367
+T + ++GL L+ LTNLE INL +T + D L LAG++ LK LNLD Q+TD GL
Sbjct: 322 ETANIDNAGLAALAPLTNLEEINLWYTFVDDAGLAPLAGMTKLKRLNLDKCQVTDAGLVH 381
Query: 368 LTSLTGLTHLDLFGARITDSGAAYLR 393
L L+ L L + R+TD+G A L
Sbjct: 382 LKGLSNLEFLHIGSTRVTDTGLAELE 407
Score = 104 bits (259), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 72/226 (31%), Positives = 116/226 (51%), Gaps = 2/226 (0%)
Query: 169 TDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG 228
+D ++K L GL +L L+ + VTD+G+A L G L +L LE VT A ++ L+ L
Sbjct: 84 SDENLKHLKGLPSLTRLEANVRGVTDAGLANLDGHPTLRILVLELSSVTDAGMEHLTKLP 143
Query: 229 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG- 287
+L + L RC L+ G E +KI +L+ + D+CL +K ++ LE L+L C
Sbjct: 144 ALEDIQLKRCDLTSKGYESLAKIKTLRRIRAPQTNFNDDCLAAIKDMSQLELLDLQDCNQ 203
Query: 288 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 347
+ + GL L G+ LK L + + + + ++ NL S++L + + ++ + GL
Sbjct: 204 VTEAGLAPLAGMTKLKSLRIYGPTITDTVMGYIKDCKNLASLSLEQSAVGVDGMKVIGGL 263
Query: 348 SSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
S LK L L A +TD LA + L L L+L T G +L
Sbjct: 264 SKLKELKLYGASNVTDDALAQIAGLKDLEILELRSTTTTSKGMVHL 309
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 74/228 (32%), Positives = 125/228 (54%), Gaps = 6/228 (2%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+ L S+ + G +TD+ + ++KDC NL SL DG ++ + GLS L L
Sbjct: 216 TKLKSLRIYGPTITDTVMGYIKDCKNLASLSLEQSAVGVDG-MKVIGGLSKLKELKLYGA 274
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+ +T + AGL +L L+L T G+V+L G+ KL+ L++ I ++ + L
Sbjct: 275 SNVTDDALAQIAGLKDLEILELRSTTTTSKGMVHLAGMSKLKLLDLSETANIDNAGLAAL 334
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LTNL+ + + + V D+G+A L G+ KL LNL+ C VT A L L L +L +L++
Sbjct: 335 APLTNLEEINLWYTFVDDAGLAPLAGMTKLKRLNLDKCQVTDAGLVHLKGLSNLEFLHIG 394
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLK----GLTNLE 279
+++D G + + +LK L + F N+I+D+ + L+ GLT +E
Sbjct: 395 STRVTDTGLAELEGLKNLKHLVITFCNDISDDGVAKLQAALPGLTKIE 442
>gi|219122964|ref|XP_002181805.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217407081|gb|EEC47019.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 486
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 131/429 (30%), Positives = 205/429 (47%), Gaps = 44/429 (10%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
LP+D+ I L+ L +L R+C L L L GV D+W++ ++++ S
Sbjct: 1 LPQDVVDDILQSLIRHSALNATTLRILRNCELGVLSLSGCRGVTDEWLEALSAESSD--- 57
Query: 62 VDLSGSDVTDSGLIHLKDCS----NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
S + + + H S N LD +++D GL L L L +
Sbjct: 58 ---SPPHLRTALMWHPCAASSALTNTTLLDLRGSQRLTDRGLMQLHDLGRLEVAKLDNCH 114
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
++ +G+ + L L L C R+ +VN+ L L++L++ C CITD + L
Sbjct: 115 SVVGRGLVVLSSSPRLHTLSLTNCRRLTDEAIVNISHLQSLQALSLDGCRCITDFSLAAL 174
Query: 177 SGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSAL----GSL 230
+ + NL+ L +S C +T+ G+ L+ LQ+L ++L C V+ A + +L+A +L
Sbjct: 175 ADMYNLRKLGLSQCDLITNEGLKALEHLQRLQEISLGWCRQVSDAGIQTLTAQPGRSSNL 234
Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
L L RC ++D+G + KI ++K L L ++ + D L L L LE LNLDSC IGD
Sbjct: 235 QILRLARCPITDEGVQYLGKIRNVKTLELCYSAVKDIHLTKLVNLPMLEELNLDSCPIGD 294
Query: 291 ---EGLVNLTGLCNLKCLELSDT------------------------QVGSSGLRHLSGL 323
+ N L NL L+L+D+ + + GLRHLS L
Sbjct: 295 LAIQHFANHNVLPNLVSLDLADSDISDLGMVQIAKFTKLKRLSLFYCSISNRGLRHLSIL 354
Query: 324 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 383
T L +NL ISD LR L L LKSL++ + ++TD G L+ + L L+L G
Sbjct: 355 TELRVLNLDSRDISDDGLRHLQHLKQLKSLDIFSGRVTDLGCTYLSKIKTLESLELCGGG 414
Query: 384 ITDSGAAYL 392
+ D+G A L
Sbjct: 415 VRDAGCASL 423
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 82/262 (31%), Positives = 128/262 (48%), Gaps = 9/262 (3%)
Query: 29 RDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDF 88
R LQ L L + P + D+ + + + ++ +++L S V D L L + L+ L+
Sbjct: 230 RSSNLQILRLARCP-ITDEGVQYLG-KIRNVKTLELCYSAVKDIHLTKLVNLPMLEELNL 287
Query: 89 NFCIQISDGGLEHLRG---LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH 145
+ C I D ++H L NL SL ++ I+ GM A L +L L C+ +
Sbjct: 288 DSC-PIGDLAIQHFANHNVLPNLVSLDLA-DSDISDLGMVQIAKFTKLKRLSLFYCSISN 345
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK 205
GL +L L +L LN+ + I+D ++ L L LKSL I +VTD G YL ++
Sbjct: 346 RGLRHLSILTELRVLNLDSRD-ISDDGLRHLQHLKQLKSLDIFSGRVTDLGCTYLSKIKT 404
Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGFNEI 264
L L L G V A SL+ L +L LNL++ + +++ G + + LK LNL +
Sbjct: 405 LESLELCGGGVRDAGCASLAKLENLTSLNLSQNERITNRGAAALAALSKLKALNLSHTRV 464
Query: 265 TDECLVHLKGLTNLESLNLDSC 286
L + GL NL+SL L C
Sbjct: 465 NASALRYFSGLMNLQSLALYGC 486
>gi|46446910|ref|YP_008275.1| hypothetical protein pc1276 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400551|emb|CAF24000.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 667
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 132/387 (34%), Positives = 217/387 (56%), Gaps = 13/387 (3%)
Query: 20 LTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHL 77
LT+ L A ++C L+ L L + + D + +AS + L ++L+G ++TD+GL HL
Sbjct: 271 LTDAHLLALKNCKNLKALHLQECDKLTDAGLAHLASLMA-LQHLNLNGCWELTDAGLAHL 329
Query: 78 KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLD 137
LQ L+ C +I+D GL HL L L L +T G+ L+ L L+
Sbjct: 330 ASLMALQHLNLAKCHKITDAGLAHLTSLVALQHLDLSCCRNLTDAGLTHLRPLVALTHLN 389
Query: 138 LERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS-KVTDS 195
L +C +I GL +L L+ L+ L++ +C +TD+ + L+ L L+ L +S S T++
Sbjct: 390 LAKCHKITDAGLAHLTSLVALQHLDLSYCEKLTDAGLAHLTPLVALQHLDLSYSHHFTNA 449
Query: 196 GIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGS 253
G+A+L L L LNL C T A L L++L +L +L+L+ C+ L+D G + + +
Sbjct: 450 GLAHLTSLVALQHLNLNSCYKFTDAGLAHLTSLVALQHLDLSCCRNLTDAGLAHLAPLVA 509
Query: 254 LKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-T 310
L+ L+L + + T+ L HL L L+ L+L C + D GL +LT L L+ L+LS
Sbjct: 510 LQHLDLSYSHHFTNAGLAHLTSLVALQHLDLSCCRNLTDAGLAHLTSLVALQHLDLSSCK 569
Query: 311 QVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAAL 368
++ +GL HL+ L L+ ++LS ++D L LA L +L+ L+L + +++TD GLA L
Sbjct: 570 KLTDAGLEHLTPLVALQHLDLSSCKKLTDAGLAHLAPLVALQHLDLSSCKKLTDAGLAHL 629
Query: 369 TSLTGLTHLDL-FGARITDSGAAYLRS 394
L L HL+L + ++TD+G A+ +S
Sbjct: 630 APLVALQHLNLNWCDKLTDAGVAHFKS 656
Score = 154 bits (390), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 123/338 (36%), Positives = 195/338 (57%), Gaps = 12/338 (3%)
Query: 66 GSDVTDSGLIHLKDCSN-LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM 124
S VT+ I LK SN ++ L+F+ I ++D L L+ NL +L + + +T G+
Sbjct: 243 ASHVTEFEKI-LKHFSNEIERLNFSKNIFLTDAHLLALKNCKNLKALHLQECDKLTDAGL 301
Query: 125 KAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
A L+ L L+L C + GL +L LM L+ LN+ C+ ITD+ + L+ L L+
Sbjct: 302 AHLASLMALQHLNLNGCWELTDAGLAHLASLMALQHLNLAKCHKITDAGLAHLTSLVALQ 361
Query: 184 SLQISCSK-VTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQ-L 240
L +SC + +TD+G+ +L+ L LT LNL C +T A L L++L +L +L+L+ C+ L
Sbjct: 362 HLDLSCCRNLTDAGLTHLRPLVALTHLNLAKCHKITDAGLAHLTSLVALQHLDLSYCEKL 421
Query: 241 SDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTG 298
+D G + + +L+ L+L + + T+ L HL L L+ LNL+SC D GL +LT
Sbjct: 422 TDAGLAHLTPLVALQHLDLSYSHHFTNAGLAHLTSLVALQHLNLNSCYKFTDAGLAHLTS 481
Query: 299 LCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSFT-GISDGSLRKLAGLSSLKSLNLD 356
L L+ L+LS + + +GL HL+ L L+ ++LS++ ++ L L L +L+ L+L
Sbjct: 482 LVALQHLDLSCCRNLTDAGLAHLAPLVALQHLDLSYSHHFTNAGLAHLTSLVALQHLDLS 541
Query: 357 -ARQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYL 392
R +TD GLA LTSL L HLDL ++TD+G +L
Sbjct: 542 CCRNLTDAGLAHLTSLVALQHLDLSSCKKLTDAGLEHL 579
>gi|46447653|ref|YP_009018.1| hypothetical protein pc2019 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46401294|emb|CAF24743.1| hypothetical protein pc2019 [Candidatus Protochlamydia amoebophila
UWE25]
Length = 959
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 126/337 (37%), Positives = 186/337 (55%), Gaps = 10/337 (2%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
++TD+GL HL LQ+LD +FC +++D GL HL+ L L L+ + +T G+
Sbjct: 479 NITDAGLAHLTPLVALQNLDLSFCYKLTDDGLAHLKPLVALKQLNLWACSNLTGAGLAHL 538
Query: 128 AGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
LI L LDL C + GL +LK L+ L+ L++ C +TD+ + L+ L L+ L
Sbjct: 539 TPLIALKHLDLGFCYGLTDDGLAHLKPLVALQYLSLSGCKKLTDAGLAHLTSLITLQQLN 598
Query: 187 I-SCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDD 243
I SC+ +TD G+A+LK L L LNL C +T L L++L +L +L+L+ C L+D
Sbjct: 599 ISSCANLTDDGLAHLKPLIALQQLNLSSCKKLTGVGLAHLTSLVNLTHLSLSECGNLTDA 658
Query: 244 GCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCN 301
G + + +L+ L+L F +TD L HL L L+ L L +CG + D GL +LT L
Sbjct: 659 GLAHLAPLVALQQLDLNFCYNLTDAGLAHLITLVALQQLYLSACGNLTDAGLAHLTPLVA 718
Query: 302 LKCLELSD-TQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNL-DAR 358
L+ L LS ++ GL HL+ L L ++LS ++D L L L +L LNL D
Sbjct: 719 LQQLNLSGCKKLTGVGLAHLTSLATLTHLSLSACANLTDDGLAHLTTLVALTYLNLSDCN 778
Query: 359 QITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRS 394
T GL L L L +L L G ++TD+G AYL+
Sbjct: 779 NFTGAGLTHLKPLVALQYLSLSGCKKLTDAGLAYLKP 815
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 129/362 (35%), Positives = 191/362 (52%), Gaps = 36/362 (9%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
+++TD GL +L+ LQ L+ N C + +D GL HL L +LT L + + IT G+
Sbjct: 352 NNLTDVGLAYLRPLITLQGLNLNSCKKFTDAGLAHLDSLIDLTQLGLAKCHNITDNGLAY 411
Query: 127 FAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
LI L L+L C ++ GLV+LK L+ L LN+ C+ +TD+ + L+ L L+ L
Sbjct: 412 LRPLIALQGLNLNGCKKLTDAGLVHLKSLVTLTYLNLSQCDDLTDAGLAHLTPLVALQHL 471
Query: 186 QIS---------------------------CSKVTDSGIAYLKGLQKLTLLNLEGCP-VT 217
+S C K+TD G+A+LK L L LNL C +T
Sbjct: 472 DLSFCCYNITDAGLAHLTPLVALQNLDLSFCYKLTDDGLAHLKPLVALKQLNLWACSNLT 531
Query: 218 AACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGL 275
A L L+ L +L +L+L C L+DDG + +L+ L+L G ++TD L HL L
Sbjct: 532 GAGLAHLTPLIALKHLDLGFCYGLTDDGLAHLKPLVALQYLSLSGCKKLTDAGLAHLTSL 591
Query: 276 TNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSF 333
L+ LN+ SC + D+GL +L L L+ L LS ++ GL HL+ L NL ++LS
Sbjct: 592 ITLQQLNISSCANLTDDGLAHLKPLIALQQLNLSSCKKLTGVGLAHLTSLVNLTHLSLSE 651
Query: 334 TG-ISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFG-ARITDSGAA 390
G ++D L LA L +L+ L+L+ +TD GLA L +L L L L +TD+G A
Sbjct: 652 CGNLTDAGLAHLAPLVALQQLDLNFCYNLTDAGLAHLITLVALQQLYLSACGNLTDAGLA 711
Query: 391 YL 392
+L
Sbjct: 712 HL 713
Score = 148 bits (373), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 124/338 (36%), Positives = 185/338 (54%), Gaps = 11/338 (3%)
Query: 66 GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMK 125
+ +TD+ L+ LKDC L+ L C ++D GL +LR L L L+ T G+
Sbjct: 326 NASLTDAHLLALKDCKKLKVLYLQECNNLTDVGLAYLRPLITLQGLNLNSCKKFTDAGLA 385
Query: 126 AFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
LI+L +L L +C I GL L+ L+ L+ LN+ C +TD+ + L L L
Sbjct: 386 HLDSLIDLTQLGLAKCHNITDNGLAYLRPLIALQGLNLNGCKKLTDAGLVHLKSLVTLTY 445
Query: 185 LQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC--PVTAACLDSLSALGSLFYLNLNRC-QL 240
L +S C +TD+G+A+L L L L+L C +T A L L+ L +L L+L+ C +L
Sbjct: 446 LNLSQCDDLTDAGLAHLTPLVALQHLDLSFCCYNITDAGLAHLTPLVALQNLDLSFCYKL 505
Query: 241 SDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTG 298
+DDG + +LK LNL + +T L HL L L+ L+L C G+ D+GL +L
Sbjct: 506 TDDGLAHLKPLVALKQLNLWACSNLTGAGLAHLTPLIALKHLDLGFCYGLTDDGLAHLKP 565
Query: 299 LCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLD 356
L L+ L LS ++ +GL HL+ L L+ +N+S ++D L L L +L+ LNL
Sbjct: 566 LVALQYLSLSGCKKLTDAGLAHLTSLITLQQLNISSCANLTDDGLAHLKPLIALQQLNLS 625
Query: 357 A-RQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYL 392
+ +++T GLA LTSL LTHL L +TD+G A+L
Sbjct: 626 SCKKLTGVGLAHLTSLVNLTHLSLSECGNLTDAGLAHL 663
Score = 147 bits (372), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 123/338 (36%), Positives = 188/338 (55%), Gaps = 11/338 (3%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
++TD+GL +L+ LQ L+ N C +++D GL HL+ L LT L+ + + +T G+
Sbjct: 403 NITDNGLAYLRPLIALQGLNLNGCKKLTDAGLVHLKSLVTLTYLNLSQCDDLTDAGLAHL 462
Query: 128 AGLINLVKLDLERCTR--IHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
L+ L LDL C GL +L L+ L++L++ +C +TD + L L LK L
Sbjct: 463 TPLVALQHLDLSFCCYNITDAGLAHLTPLVALQNLDLSFCYKLTDDGLAHLKPLVALKQL 522
Query: 186 QI-SCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSD 242
+ +CS +T +G+A+L L L L+L C +T L L L +L YL+L+ C +L+D
Sbjct: 523 NLWACSNLTGAGLAHLTPLIALKHLDLGFCYGLTDDGLAHLKPLVALQYLSLSGCKKLTD 582
Query: 243 DGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLC 300
G + + +L+ LN+ +TD+ L HLK L L+ LNL SC + GL +LT L
Sbjct: 583 AGLAHLTSLITLQQLNISSCANLTDDGLAHLKPLIALQQLNLSSCKKLTGVGLAHLTSLV 642
Query: 301 NLKCLELSDT-QVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA- 357
NL L LS+ + +GL HL+ L L+ ++L+F ++D L L L +L+ L L A
Sbjct: 643 NLTHLSLSECGNLTDAGLAHLAPLVALQQLDLNFCYNLTDAGLAHLITLVALQQLYLSAC 702
Query: 358 RQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRS 394
+TD GLA LT L L L+L G ++T G A+L S
Sbjct: 703 GNLTDAGLAHLTPLVALQQLNLSGCKKLTGVGLAHLTS 740
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 121/324 (37%), Positives = 173/324 (53%), Gaps = 9/324 (2%)
Query: 65 SGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM 124
S +++TD GL HLK LQ L+ + C +++ GL HL L NLT LS +T G+
Sbjct: 601 SCANLTDDGLAHLKPLIALQQLNLSSCKKLTGVGLAHLTSLVNLTHLSLSECGNLTDAGL 660
Query: 125 KAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
A L+ L +LDL C + GL +L L+ L+ L + C +TD+ + L+ L L+
Sbjct: 661 AHLAPLVALQQLDLNFCYNLTDAGLAHLITLVALQQLYLSACGNLTDAGLAHLTPLVALQ 720
Query: 184 SLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QL 240
L +S C K+T G+A+L L LT L+L C +T L L+ L +L YLNL+ C
Sbjct: 721 QLNLSGCKKLTGVGLAHLTSLATLTHLSLSACANLTDDGLAHLTTLVALTYLNLSDCNNF 780
Query: 241 SDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTG 298
+ G + +L+ L+L G ++TD L +LK L L+ LNL C I D GL +L
Sbjct: 781 TGAGLTHLKPLVALQYLSLSGCKKLTDAGLAYLKPLVALQQLNLRGCKKITDAGLTHLMS 840
Query: 299 LCNLKCLELSD-TQVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNL- 355
L L+CL LS ++ GL HL L L ++L ++D L L L +L LNL
Sbjct: 841 LVALQCLSLSGCKKLTDDGLAHLKPLVALTHLSLGECVKLTDDGLAHLTPLLALTHLNLS 900
Query: 356 DARQITDTGLAALTSLTGLTHLDL 379
D +T GLA LT L LT++DL
Sbjct: 901 DCNNLTVAGLAHLTPLENLTYVDL 924
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 52/103 (50%), Gaps = 1/103 (0%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TD+GL HL LQ L + C +++D GL HL+ L LT LS +T G+
Sbjct: 830 ITDAGLTHLMSLVALQCLSLSGCKKLTDDGLAHLKPLVALTHLSLGECVKLTDDGLAHLT 889
Query: 129 GLINLVKLDLERCTRIH-GGLVNLKGLMKLESLNIKWCNCITD 170
L+ L L+L C + GL +L L L +++ CN TD
Sbjct: 890 PLLALTHLNLSDCNNLTVAGLAHLTPLENLTYVDLNNCNNFTD 932
>gi|46447590|ref|YP_008955.1| hypothetical protein pc1956 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46401231|emb|CAF24680.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 659
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 127/340 (37%), Positives = 188/340 (55%), Gaps = 10/340 (2%)
Query: 65 SGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM 124
+ +TD+ L+ LK+C NL+ L C ++D GL HL L L L+ + +T G+
Sbjct: 234 ENAHLTDAHLLALKNCKNLKELHLQECRNLTDAGLVHLAPLVALKHLNLNFCDKLTNTGL 293
Query: 125 KAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
L L L+L C + GL +L L L+ LN+ +C+ +TD+ + LS LT L+
Sbjct: 294 AHLRPLTALQHLNLGNCRNLTDAGLAHLTPLTALQHLNLNFCDKLTDTGLVRLSPLTALQ 353
Query: 184 SLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QL 240
L +S C +TD+G+ +LK L L LNL C +T A L L L +L +L+L+ C L
Sbjct: 354 HLDLSDCENLTDAGLVHLKPLVALQHLNLSCCENLTDAGLVHLKLLVALQHLDLSDCNNL 413
Query: 241 SDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTG 298
+D G + + +L+ L+L + N +TD LVHLK LT L+ L+L C + D+GL +LT
Sbjct: 414 TDAGLAHLTPLTALQYLDLSYCNNLTDAGLVHLKFLTALQHLDLRGCDKVADDGLAHLTP 473
Query: 299 LCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLD 356
L L+ L LS + + +GL HL LT L+ + LS ++D L L L +L+ L+L
Sbjct: 474 LTALQALSLSQCRNLTDAGLGHLKLLTALQYLRLSQCWNLTDAGLIHLRPLVALQHLDLS 533
Query: 357 A-RQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLRS 394
+TD GL LT L L HLDL + +T G A+LRS
Sbjct: 534 YCGNLTDVGLVHLTPLMALQHLDLNYCENLTGDGLAHLRS 573
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 125/337 (37%), Positives = 192/337 (56%), Gaps = 12/337 (3%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
++TD+GL HL + LQ L+ NFC +++D GL L L+ L L +T G+
Sbjct: 312 NLTDAGLAHLTPLTALQHLNLNFCDKLTDTGLVRLSPLTALQHLDLSDCENLTDAGLVHL 371
Query: 128 AGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
L+ L L+L C + GLV+LK L+ L+ L++ CN +TD+ + L+ LT L+ L
Sbjct: 372 KPLVALQHLNLSCCENLTDAGLVHLKLLVALQHLDLSDCNNLTDAGLAHLTPLTALQYLD 431
Query: 187 IS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQ-LSDD 243
+S C+ +TD+G+ +LK L L L+L GC V L L+ L +L L+L++C+ L+D
Sbjct: 432 LSYCNNLTDAGLVHLKFLTALQHLDLRGCDKVADDGLAHLTPLTALQALSLSQCRNLTDA 491
Query: 244 GCEKFSKIGSLKVLNLG--FNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLC 300
G + +L+ L L +N +TD L+HL+ L L+ L+L CG + D GLV+LT L
Sbjct: 492 GLGHLKLLTALQYLRLSQCWN-LTDAGLIHLRPLVALQHLDLSYCGNLTDVGLVHLTPLM 550
Query: 301 NLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA- 357
L+ L+L+ + + GL HL LT L+ ++L+ ++D L L L++L+ L+L
Sbjct: 551 ALQHLDLNYCENLTGDGLAHLRSLTTLQHLSLNQCWNLTDAGLVHLEPLTALQHLDLSYC 610
Query: 358 RQITDTGLAALTSLTGLTHLDLFGA-RITDSGAAYLR 393
TD GL LTSL L HL+L G R+TD G A +
Sbjct: 611 GNFTDVGLVHLTSLMALQHLNLRGCDRVTDVGLALFK 647
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 107/297 (36%), Positives = 166/297 (55%), Gaps = 10/297 (3%)
Query: 108 LTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCN 166
+ +L+F N +T + A NL +L L+ C + GLV+L L+ L+ LN+ +C+
Sbjct: 227 IEALNFSENAHLTDAHLLALKNCKNLKELHLQECRNLTDAGLVHLAPLVALKHLNLNFCD 286
Query: 167 CITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSL 224
+T++ + L LT L+ L + +C +TD+G+A+L L L LNL C +T L L
Sbjct: 287 KLTNTGLAHLRPLTALQHLNLGNCRNLTDAGLAHLTPLTALQHLNLNFCDKLTDTGLVRL 346
Query: 225 SALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGFNE-ITDECLVHLKGLTNLESLN 282
S L +L +L+L+ C+ L+D G + +L+ LNL E +TD LVHLK L L+ L+
Sbjct: 347 SPLTALQHLDLSDCENLTDAGLVHLKPLVALQHLNLSCCENLTDAGLVHLKLLVALQHLD 406
Query: 283 LDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLS-FTGISDG 339
L C + D GL +LT L L+ L+LS + +GL HL LT L+ ++L ++D
Sbjct: 407 LSDCNNLTDAGLAHLTPLTALQYLDLSYCNNLTDAGLVHLKFLTALQHLDLRGCDKVADD 466
Query: 340 SLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGA-RITDSGAAYLRS 394
L L L++L++L+L R +TD GL L LT L +L L +TD+G +LR
Sbjct: 467 GLAHLTPLTALQALSLSQCRNLTDAGLGHLKLLTALQYLRLSQCWNLTDAGLIHLRP 523
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 85/244 (34%), Positives = 129/244 (52%), Gaps = 7/244 (2%)
Query: 58 SLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+L +DLS +++TD+GL HL + LQ LD ++C ++D GL HL+ L+ L L R
Sbjct: 401 ALQHLDLSDCNNLTDAGLAHLTPLTALQYLDLSYCNNLTDAGLVHLKFLTALQHLDLRGC 460
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
+ + G+ L L L L +C + GL +LK L L+ L + C +TD+ +
Sbjct: 461 DKVADDGLAHLTPLTALQALSLSQCRNLTDAGLGHLKLLTALQYLRLSQCWNLTDAGLIH 520
Query: 176 LSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYL 233
L L L+ L +S C +TD G+ +L L L L+L C +T L L +L +L +L
Sbjct: 521 LRPLVALQHLDLSYCGNLTDVGLVHLTPLMALQHLDLNYCENLTGDGLAHLRSLTTLQHL 580
Query: 234 NLNRC-QLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCG-IGD 290
+LN+C L+D G + +L+ L+L + TD LVHL L L+ LNL C + D
Sbjct: 581 SLNQCWNLTDAGLVHLEPLTALQHLDLSYCGNFTDVGLVHLTSLMALQHLNLRGCDRVTD 640
Query: 291 EGLV 294
GL
Sbjct: 641 VGLA 644
>gi|46446667|ref|YP_008032.1| hypothetical protein pc1033 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400308|emb|CAF23757.1| hypothetical protein pc1033 [Candidatus Protochlamydia amoebophila
UWE25]
Length = 662
Score = 157 bits (398), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 133/359 (37%), Positives = 197/359 (54%), Gaps = 35/359 (9%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR-------------------GLSNLT 109
+TD+GL HL + LQ L C ++++ GL HL GL++LT
Sbjct: 262 LTDAGLAHLTPLTALQHLGLGQCWRLTNAGLAHLTPLTALQYLNLSEYKNLTDAGLAHLT 321
Query: 110 SLSFRRN------NAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNI 162
L+ ++ +T G+ L+ L LDL C + GL +L L L+ LN+
Sbjct: 322 PLTALQHLGLSGCQNLTDAGLAHLTPLMGLQHLDLSGCQNLTDAGLAHLTPLTGLQHLNL 381
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAAC 220
CN +TD+ + L+ LT L+ L +S C +TD+G+A+L L L L+L GC +T A
Sbjct: 382 SRCNKLTDAGLAHLTPLTGLQHLDLSGCQNLTDAGLAHLTPLTGLQHLDLSGCQNLTDAG 441
Query: 221 LDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNL 278
L L+ L L +LNL C + +D+G + + L+ LNL N++TD L HL LT L
Sbjct: 442 LAHLTPLTGLQHLNLCNCRKFTDNGLAHLTPLSVLQHLNLSRCNKLTDVGLAHLTPLTAL 501
Query: 279 ESLNLDSC-GIGDEGLVNLTGLCNLKCLEL-SDTQVGSSGLRHLSGLTNLESINLSF-TG 335
+ L+L SC + D GL +LT L +L+ L L S ++ +GL HL LT L+ +NLS
Sbjct: 502 QHLDLSSCYNLTDVGLAHLTPLTSLQHLGLISCDKLTDAGLVHLKLLTGLQHLNLSNCKN 561
Query: 336 ISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYL 392
++D L L L++L+ L L+ R++TD GLA LTSLT L HLDL + +TD+G A+L
Sbjct: 562 LTDAGLAHLTPLTALQYLYLNWCRKLTDAGLAHLTSLTALQHLDLRYCQNLTDAGLAHL 620
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 132/372 (35%), Positives = 197/372 (52%), Gaps = 33/372 (8%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNF 90
ALQ L L +Y + D + + ++L + LSG ++TD+GL HL LQ LD +
Sbjct: 300 ALQYLNLSEYKNLTDAGLAHLTPL-TALQHLGLSGCQNLTDAGLAHLTPLMGLQHLDLSG 358
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLV 149
C ++D GL HL L+ L L+ R N +T G+ L L LDL C + GL
Sbjct: 359 CQNLTDAGLAHLTPLTGLQHLNLSRCNKLTDAGLAHLTPLTGLQHLDLSGCQNLTDAGLA 418
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTL 208
+L L L+ L++ C +TD+ + L+ LT L+ L + +C K TD+G+A+L L L
Sbjct: 419 HLTPLTGLQHLDLSGCQNLTDAGLAHLTPLTGLQHLNLCNCRKFTDNGLAHLTPLSVLQH 478
Query: 209 LNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNL-GFNEIT 265
LNL C +T L L+ L +L +L+L+ C L+D G + + SL+ L L +++T
Sbjct: 479 LNLSRCNKLTDVGLAHLTPLTALQHLDLSSCYNLTDVGLAHLTPLTSLQHLGLISCDKLT 538
Query: 266 DECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGL 323
D LVHLK LT L+ LNL +C + D GL +LT L L+ L L+ ++ +GL HL+ L
Sbjct: 539 DAGLVHLKLLTGLQHLNLSNCKNLTDAGLAHLTPLTALQYLYLNWCRKLTDAGLAHLTSL 598
Query: 324 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA- 382
T L+ ++L + + +TD GLA LT LTGL HLDL
Sbjct: 599 TALQHLDLRY-----------------------CQNLTDAGLAHLTPLTGLRHLDLSQCW 635
Query: 383 RITDSGAAYLRS 394
R+T +G A ++
Sbjct: 636 RLTKAGLARFKT 647
>gi|168698161|ref|ZP_02730438.1| hypothetical protein GobsU_01477 [Gemmata obscuriglobus UQM 2246]
Length = 417
Score = 157 bits (397), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 116/337 (34%), Positives = 184/337 (54%), Gaps = 2/337 (0%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
+L +++L + VTD G+ L L +L+ +F ++D G++ L G LT+L +
Sbjct: 74 ALTTLNLGATKVTDVGVKELAGFKALTTLNLSFT-TLTDVGVKELAGFKALTTLELNYTD 132
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
+T G+K AGL L L L G+ L L +L L + +TD+ +K L+
Sbjct: 133 -VTDAGVKELAGLKALTTLGLGGTKVTDAGVKELASLKELSVLGLFAAKAVTDAGVKELA 191
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
GL L +L++ +KVTD+G+ L GL+ LT L+L VT A + L+ L +L L+L
Sbjct: 192 GLKALTTLELGLTKVTDAGVKELAGLKALTTLDLHYTGVTDAGVKELAGLKALSVLDLGN 251
Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
++D G ++ + + +L LNLG ++TD + L GL L +LNL + D GL L
Sbjct: 252 TGVTDAGVKELAGLKALTTLNLGGAKVTDAGVKELAGLKALSTLNLGGTKVTDTGLKELA 311
Query: 298 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 357
G L L+LS T + +G++ L+GLT L ++LS T ++D +++LA L++L L L
Sbjct: 312 GFKALTTLDLSFTTLTDAGVKELAGLTALTLLDLSGTTLTDAGVKELAPLTNLTMLYLGE 371
Query: 358 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRS 394
+TD GL L L LT L LF ++TD+G L +
Sbjct: 372 TGVTDAGLKELAGLKNLTALFLFNTKVTDAGVKELTA 408
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 96/268 (35%), Positives = 150/268 (55%), Gaps = 2/268 (0%)
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
G+K AGL L L+L G+ L G L +LN+ + +TD +K L+G
Sbjct: 64 AGVKELAGLKALTTLNLGATKVTDVGVKELAGFKALTTLNLSF-TTLTDVGVKELAGFKA 122
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-L 240
L +L+++ + VTD+G+ L GL+ LT L L G VT A + L++L L L L + +
Sbjct: 123 LTTLELNYTDVTDAGVKELAGLKALTTLGLGGTKVTDAGVKELASLKELSVLGLFAAKAV 182
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
+D G ++ + + +L L LG ++TD + L GL L +L+L G+ D G+ L GL
Sbjct: 183 TDAGVKELAGLKALTTLELGLTKVTDAGVKELAGLKALTTLDLHYTGVTDAGVKELAGLK 242
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
L L+L +T V +G++ L+GL L ++NL ++D +++LAGL +L +LNL ++
Sbjct: 243 ALSVLDLGNTGVTDAGVKELAGLKALTTLNLGGAKVTDAGVKELAGLKALSTLNLGGTKV 302
Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSG 388
TDTGL L LT LDL +TD+G
Sbjct: 303 TDTGLKELAGFKALTTLDLSFTTLTDAG 330
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 80/230 (34%), Positives = 130/230 (56%), Gaps = 1/230 (0%)
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
+ ++D+ +K L+GL L +L + +KVTD G+ L G + LT LNL +T +
Sbjct: 57 YACPLSDAGVKELAGLKALTTLNLGATKVTDVGVKELAGFKALTTLNLSFTTLTDVGVKE 116
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
L+ +L L LN ++D G ++ + + +L L LG ++TD + L L L L L
Sbjct: 117 LAGFKALTTLELNYTDVTDAGVKELAGLKALTTLGLGGTKVTDAGVKELASLKELSVLGL 176
Query: 284 DSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 342
+ + D G+ L GL L LEL T+V +G++ L+GL L +++L +TG++D ++
Sbjct: 177 FAAKAVTDAGVKELAGLKALTTLELGLTKVTDAGVKELAGLKALTTLDLHYTGVTDAGVK 236
Query: 343 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
+LAGL +L L+L +TD G+ L L LT L+L GA++TD+G L
Sbjct: 237 ELAGLKALSVLDLGNTGVTDAGVKELAGLKALTTLNLGGAKVTDAGVKEL 286
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 98/183 (53%), Gaps = 1/183 (0%)
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
L CP++ A + L+ L +L LNL +++D G ++ + +L LNL F +TD +
Sbjct: 56 LYACPLSDAGVKELAGLKALTTLNLGATKVTDVGVKELAGFKALTTLNLSFTTLTDVGVK 115
Query: 271 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 330
L G L +L L+ + D G+ L GL L L L T+V +G++ L+ L L +
Sbjct: 116 ELAGFKALTTLELNYTDVTDAGVKELAGLKALTTLGLGGTKVTDAGVKELASLKELSVLG 175
Query: 331 L-SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 389
L + ++D +++LAGL +L +L L ++TD G+ L L LT LDL +TD+G
Sbjct: 176 LFAAKAVTDAGVKELAGLKALTTLELGLTKVTDAGVKELAGLKALTTLDLHYTGVTDAGV 235
Query: 390 AYL 392
L
Sbjct: 236 KEL 238
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 67/115 (58%)
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
S+ L +C + D G+ L GL L L L T+V G++ L+G L ++NLSFT ++D
Sbjct: 53 SVFLYACPLSDAGVKELAGLKALTTLNLGATKVTDVGVKELAGFKALTTLNLSFTTLTDV 112
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRS 394
+++LAG +L +L L+ +TD G+ L L LT L L G ++TD+G L S
Sbjct: 113 GVKELAGFKALTTLELNYTDVTDAGVKELAGLKALTTLGLGGTKVTDAGVKELAS 167
>gi|46446831|ref|YP_008196.1| hypothetical protein pc1197 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400472|emb|CAF23921.1| hypothetical protein pc1197 [Candidatus Protochlamydia amoebophila
UWE25]
Length = 666
Score = 157 bits (397), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 125/337 (37%), Positives = 192/337 (56%), Gaps = 13/337 (3%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TD+ L+ LK+C NL+ L F C I+D GL HL L++L L+ + IT G+
Sbjct: 197 LTDAHLLALKNCKNLKILHFKNCRVITDAGLAHLTPLTSLQRLNLSKLWCITDAGLAHLT 256
Query: 129 GLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
L L LDL +C+++ GL +L L L+ L + +C +TD+ + L+ LT L+ L +
Sbjct: 257 TLKALQHLDLSQCSKLTDDGLAHLTPLTALQHLGLNYCENLTDAGLAHLTLLTGLQHLDL 316
Query: 188 S-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQ-LSDDG 244
S C +TD+G+A+L L L L+L C +T A L L++L L +L+L+ C+ L+D G
Sbjct: 317 SNCKNLTDAGLAHLTSLMALQHLDLSWCLKLTDAGLAHLTSLTGLQHLDLSNCKNLTDAG 376
Query: 245 CEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 303
+ + +L+ LNL + ++TD L HL LT L+ LNL + GL +LT L L+
Sbjct: 377 LAHLTSLMALQHLNLSWCLKLTDAGLAHLTPLTALQHLNLSRYNLTYAGLAHLTSLTGLQ 436
Query: 304 CLELSDT-QVGSSGLRHLSGLTNLESINLSFTG---ISDGSLRKLAGLSSLKSLNLDARQ 359
L+LS + ++ +GL HL L L+ +NL TG ++D L L+ L +L++L L Q
Sbjct: 437 HLDLSGSRKLIDAGLAHLRPLVALQHLNL--TGCWKLTDAGLAHLSPLKALQTLGLSWCQ 494
Query: 360 -ITDTGLAALTSLTGLTHLDLFGA-RITDSGAAYLRS 394
+T GLA L L L +LDL +TD+G A+LR
Sbjct: 495 NLTGAGLAHLKPLVALQYLDLSNCNNLTDAGLAHLRP 531
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 126/347 (36%), Positives = 185/347 (53%), Gaps = 35/347 (10%)
Query: 58 SLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+L +DLS S +TD GL HL + LQ L N+C ++D GL HL L+ L
Sbjct: 260 ALQHLDLSQCSKLTDDGLAHLTPLTALQHLGLNYCENLTDAGLAHLTLLTGLQ------- 312
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
LDL C + GL +L LM L+ L++ WC +TD+ +
Sbjct: 313 ------------------HLDLSNCKNLTDAGLAHLTSLMALQHLDLSWCLKLTDAGLAH 354
Query: 176 LSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYL 233
L+ LT L+ L +S C +TD+G+A+L L L LNL C +T A L L+ L +L +L
Sbjct: 355 LTSLTGLQHLDLSNCKNLTDAGLAHLTSLMALQHLNLSWCLKLTDAGLAHLTPLTALQHL 414
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCG-IGDE 291
NL+R L+ G + + L+ L+L G ++ D L HL+ L L+ LNL C + D
Sbjct: 415 NLSRYNLTYAGLAHLTSLTGLQHLDLSGSRKLIDAGLAHLRPLVALQHLNLTGCWKLTDA 474
Query: 292 GLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSS 349
GL +L+ L L+ L LS Q + +GL HL L L+ ++LS ++D L L L +
Sbjct: 475 GLAHLSPLKALQTLGLSWCQNLTGAGLAHLKPLVALQYLDLSNCNNLTDAGLAHLRPLVA 534
Query: 350 LKSLNLDA-RQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLRS 394
L+ LNL ++TD GLA LTSL L HL+L + ++TD+G A+L+
Sbjct: 535 LQHLNLTGCWKLTDAGLAHLTSLMALQHLNLSWCLKLTDAGLAHLKP 581
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 112/324 (34%), Positives = 169/324 (52%), Gaps = 8/324 (2%)
Query: 58 SLLSVDLSGS-DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+L +DLS +TD+GL HL + LQ LD + C ++D GL HL L L L+
Sbjct: 335 ALQHLDLSWCLKLTDAGLAHLTSLTGLQHLDLSNCKNLTDAGLAHLTSLMALQHLNLSWC 394
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+T G+ L L L+L R + GL +L L L+ L++ + D+ + L
Sbjct: 395 LKLTDAGLAHLTPLTALQHLNLSRYNLTYAGLAHLTSLTGLQHLDLSGSRKLIDAGLAHL 454
Query: 177 SGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLN 234
L L+ L ++ C K+TD+G+A+L L+ L L L C +T A L L L +L YL+
Sbjct: 455 RPLVALQHLNLTGCWKLTDAGLAHLSPLKALQTLGLSWCQNLTGAGLAHLKPLVALQYLD 514
Query: 235 LNRC-QLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSC-GIGDE 291
L+ C L+D G + +L+ LNL G ++TD L HL L L+ LNL C + D
Sbjct: 515 LSNCNNLTDAGLAHLRPLVALQHLNLTGCWKLTDAGLAHLTSLMALQHLNLSWCLKLTDA 574
Query: 292 GLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 350
GL +L L L+ L+LS+ + GL HL L L+ +NLS ++D L L L++L
Sbjct: 575 GLAHLKPLVALQHLDLSNCNNLTDEGLTHLRPLVALQHLNLSRYNLTDDGLAHLTPLTTL 634
Query: 351 KSLNLDA-RQITDTGLAALTSLTG 373
+ L+L + +TD GLA ++
Sbjct: 635 QYLDLSSCYNLTDAGLAHFKTVAA 658
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 63/120 (52%), Gaps = 6/120 (5%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TD+GL HL LQ L+ ++C++++D GL HL+ L L L N +T +G+
Sbjct: 546 LTDAGLAHLTSLMALQHLNLSWCLKLTDAGLAHLKPLVALQHLDLSNCNNLTDEGLTHLR 605
Query: 129 GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
L+ L L+L R GL +L L L+ L++ C +TD +GL + K++ S
Sbjct: 606 PLVALQHLNLSRYNLTDDGLAHLTPLTTLQYLDLSSCYNLTD------AGLAHFKTVAAS 659
>gi|46446522|ref|YP_007887.1| hypothetical protein pc0888 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400163|emb|CAF23612.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 653
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 128/337 (37%), Positives = 192/337 (56%), Gaps = 11/337 (3%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TD+ L+ LKDC NL+ L C I+D GL HL L+ L L +T G+
Sbjct: 236 LTDAHLLALKDCKNLKVLHLEKCQVITDDGLAHLTPLTALQHLELSDCRKLTDAGLAHLT 295
Query: 129 GLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNC-ITDSDMKPLSGLTNLKSLQ 186
L L L+L C ++ GL +L L L+ LN+ C +TD+ + L+ LT L+ L
Sbjct: 296 PLTALQHLNLSFCDKLTDAGLAHLTPLTALQHLNLSRCYYKLTDAGLAHLTPLTALQHLN 355
Query: 187 IS-CSKVTDSGIAYLKGLQKLTLLNL-EGCPVTAACLDSLSALGSLFYLNLNRC-QLSDD 243
+S C K+TD+G+ +LK L L L+L E +T A L L+ L +L +L+L+ C +L+D
Sbjct: 356 LSFCDKLTDAGLVHLKLLTGLQHLDLREFWELTGAGLAHLTTLTALQHLDLSGCDKLTDV 415
Query: 244 GCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCN 301
G + + +L+ L+L +T+ LVHLK LT L+ LNL C + D GL +LT L
Sbjct: 416 GLAHLTPLTTLQHLDLKRCRNLTNAGLVHLKLLTGLQHLNLSECYHLTDAGLAHLTPLTA 475
Query: 302 LKCLELSD-TQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-R 358
L+ L+LS +++ GL HL+ LT L+ ++LS + ++D L L L++L+ L L R
Sbjct: 476 LQHLDLSQCSKLTDDGLAHLTPLTALQHLDLSQCSKLTDDGLAHLTPLTALQHLVLARCR 535
Query: 359 QITDTGLAALTSLTGLTHLDLFGA-RITDSGAAYLRS 394
+TD GLA LT L L HL+L G ++T +G A+LR
Sbjct: 536 NLTDAGLAHLTPLETLQHLNLSGGYKLTGAGLAHLRP 572
Score = 151 bits (381), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 138/391 (35%), Positives = 215/391 (54%), Gaps = 20/391 (5%)
Query: 20 LTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHL 77
LT+ L A +DC L+ L L + + D + + + ++L ++LS +TD+GL HL
Sbjct: 236 LTDAHLLALKDCKNLKVLHLEKCQVITDDGLAHL-TPLTALQHLELSDCRKLTDAGLAHL 294
Query: 78 KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR-NNAITAQGMKAFAGLINLVKL 136
+ LQ L+ +FC +++D GL HL L+ L L+ R +T G+ L L L
Sbjct: 295 TPLTALQHLNLSFCDKLTDAGLAHLTPLTALQHLNLSRCYYKLTDAGLAHLTPLTALQHL 354
Query: 137 DLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTD 194
+L C ++ GLV+LK L L+ L+++ +T + + L+ LT L+ L +S C K+TD
Sbjct: 355 NLSFCDKLTDAGLVHLKLLTGLQHLDLREFWELTGAGLAHLTTLTALQHLDLSGCDKLTD 414
Query: 195 SGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIG 252
G+A+L L L L+L+ C +T A L L L L +LNL+ C L+D G + +
Sbjct: 415 VGLAHLTPLTTLQHLDLKRCRNLTNAGLVHLKLLTGLQHLNLSECYHLTDAGLAHLTPLT 474
Query: 253 SLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDT 310
+L+ L+L +++TD+ L HL LT L+ L+L C + D+GL +LT L L+ L L+
Sbjct: 475 ALQHLDLSQCSKLTDDGLAHLTPLTALQHLDLSQCSKLTDDGLAHLTPLTALQHLVLARC 534
Query: 311 Q-VGSSGLRHLSGLTNLESINLS----FTGISDGSLRKLAGLSSLKSLNLDA-RQITDTG 364
+ + +GL HL+ L L+ +NLS TG LR L +L+ L+L +TD G
Sbjct: 535 RNLTDAGLAHLTPLETLQHLNLSGGYKLTGAGLAHLRPLV---ALQHLDLSYCNGLTDAG 591
Query: 365 LAALTSLTGLTHLDL-FGARITDSGAAYLRS 394
LA LT L L HLDL + +TD+G +LR
Sbjct: 592 LAHLTPLVALQHLDLSYCDGLTDAGLTHLRP 622
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 115/334 (34%), Positives = 181/334 (54%), Gaps = 33/334 (9%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TD+GL HL + LQ L+ +FC +++D GL HL+ L+ L L R +T G+
Sbjct: 337 LTDAGLAHLTPLTALQHLNLSFCDKLTDAGLVHLKLLTGLQHLDLREFWELTGAGLAHLT 396
Query: 129 GLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
L L LDL C ++ GL +L L L+ L++K C +T++ + L LT L+ L +
Sbjct: 397 TLTALQHLDLSGCDKLTDVGLAHLTPLTTLQHLDLKRCRNLTNAGLVHLKLLTGLQHLNL 456
Query: 188 S-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC-QLSDDGC 245
S C +TD+G+A+L P+TA L +L+L++C +L+DDG
Sbjct: 457 SECYHLTDAGLAHLT-------------PLTA-----------LQHLDLSQCSKLTDDGL 492
Query: 246 EKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLK 303
+ + +L+ L+L +++TD+ L HL LT L+ L L C + D GL +LT L L+
Sbjct: 493 AHLTPLTALQHLDLSQCSKLTDDGLAHLTPLTALQHLVLARCRNLTDAGLAHLTPLETLQ 552
Query: 304 CLELS-DTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQI 360
L LS ++ +GL HL L L+ ++LS+ G++D L L L +L+ L+L +
Sbjct: 553 HLNLSGGYKLTGAGLAHLRPLVALQHLDLSYCNGLTDAGLAHLTPLVALQHLDLSYCDGL 612
Query: 361 TDTGLAALTSLTGLTHLDL-FGARITDSGAAYLR 393
TD GL L L L HLDL + +TD+G A+ +
Sbjct: 613 TDAGLTHLRPLVALQHLDLSYCDGLTDAGLAHFK 646
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 102/291 (35%), Positives = 157/291 (53%), Gaps = 33/291 (11%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
++T +GL HL + LQ LD + C +++D GL HL L+ L
Sbjct: 386 ELTGAGLAHLTTLTALQHLDLSGCDKLTDVGLAHLTPLTTLQ------------------ 427
Query: 128 AGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
LDL+RC + + GLV+LK L L+ LN+ C +TD+ + L+ LT L+ L
Sbjct: 428 -------HLDLKRCRNLTNAGLVHLKLLTGLQHLNLSECYHLTDAGLAHLTPLTALQHLD 480
Query: 187 IS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQ-LSDD 243
+S CSK+TD G+A+L L L L+L C +T L L+ L +L +L L RC+ L+D
Sbjct: 481 LSQCSKLTDDGLAHLTPLTALQHLDLSQCSKLTDDGLAHLTPLTALQHLVLARCRNLTDA 540
Query: 244 GCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCN 301
G + + +L+ LNL G ++T L HL+ L L+ L+L C G+ D GL +LT L
Sbjct: 541 GLAHLTPLETLQHLNLSGGYKLTGAGLAHLRPLVALQHLDLSYCNGLTDAGLAHLTPLVA 600
Query: 302 LKCLELSDTQ-VGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSL 350
L+ L+LS + +GL HL L L+ ++LS+ G++D L L+++
Sbjct: 601 LQHLDLSYCDGLTDAGLTHLRPLVALQHLDLSYCDGLTDAGLAHFKFLAAI 651
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 91/175 (52%), Gaps = 4/175 (2%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNF 90
ALQ L L Q + D + + + ++L +DLS S +TD GL HL + LQ L
Sbjct: 475 ALQHLDLSQCSKLTDDGLAHL-TPLTALQHLDLSQCSKLTDDGLAHLTPLTALQHLVLAR 533
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLV 149
C ++D GL HL L L L+ +T G+ L+ L LDL C + GL
Sbjct: 534 CRNLTDAGLAHLTPLETLQHLNLSGGYKLTGAGLAHLRPLVALQHLDLSYCNGLTDAGLA 593
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGL 203
+L L+ L+ L++ +C+ +TD+ + L L L+ L +S C +TD+G+A+ K L
Sbjct: 594 HLTPLVALQHLDLSYCDGLTDAGLTHLRPLVALQHLDLSYCDGLTDAGLAHFKFL 648
Score = 46.2 bits (108), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 58 SLLSVDLSGSD-VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+L +DLS + +TD+GL HL LQ LD ++C ++D GL HLR L L L
Sbjct: 575 ALQHLDLSYCNGLTDAGLAHLTPLVALQHLDLSYCDGLTDAGLTHLRPLVALQHLDLSYC 634
Query: 117 NAITAQGMKAFAGLINLVK 135
+ +T G+ F L ++
Sbjct: 635 DGLTDAGLAHFKFLAAIIH 653
>gi|406836026|ref|ZP_11095620.1| leucine-rich repeat-containing protein [Schlesneria paludicola DSM
18645]
Length = 586
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 130/391 (33%), Positives = 200/391 (51%), Gaps = 22/391 (5%)
Query: 6 ISQQIFNELVYSRCLTEVSLE--AFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVD 63
IS ++L+ R LT + L A D AL+ L + + +L +++
Sbjct: 135 ISDAGLDKLLALRNLTAIDLSETAITDSALKPLSVLE-----------------NLSTIN 177
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
LS + + SGL L NL++L + I++ L + L NLT+L N I+A G
Sbjct: 178 LSTTKIDGSGLADLSGLKNLKTLVLSHS-PITNEALAGVAALRNLTTLELW-NTPISADG 235
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
+K+ L +L KL+L + GL L L L++LN+ +TD+ + LS + NL
Sbjct: 236 LKSLGTLTDLTKLNLGFTSLDDTGLAELATLTNLKALNLMQTG-VTDTGLSSLSQIKNLT 294
Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
+L ++ +++TD+G+ + + L L+LEG +T L +L LG L L + + ++D
Sbjct: 295 NLNLNDTQITDAGMVAIARHKDLNELHLEGTRLTDVGLRALKTLGELDVLQIGKTAVTDA 354
Query: 244 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 303
G E+ + LK+L LG +++DE L L GL +L+SL L GI D G L L L
Sbjct: 355 GVEELAGFKHLKILRLGSTKVSDEGLKSLLGLEHLQSLGLGGTGITDVGAKQLASLTTLT 414
Query: 304 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 363
L+L T V G+R L GL+NLE ++L T ISD + L LK L L QI+D
Sbjct: 415 GLDLDATAVTDEGVRELGGLSNLEYLSLISTKISDDGVSGLGAFKKLKMLFLHNNQISDE 474
Query: 364 GLAALTSLTGLTHLDLFGARITDSGAAYLRS 394
GL L L+ LT L L ++TD G L++
Sbjct: 475 GLKGLNDLSQLTTLYLSMTQVTDVGMKELKN 505
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 125/374 (33%), Positives = 180/374 (48%), Gaps = 52/374 (13%)
Query: 45 NDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRG 104
ND+++ +I+ G L S+DLS + +TD GL L+ + L SL+ + ISD GL L
Sbjct: 64 NDRYVHLISPLGR-LESLDLSNTQITDLGLKELRKLNALTSLNLRYT-AISDVGLSELSE 121
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW 164
+S L +L+ I+ G+ L NL +DL
Sbjct: 122 MSKLDTLNLSATQ-ISDAGLDKLLALRNLTAIDLSET----------------------- 157
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
ITDS +KPLS L NL ++ +S +K+ SG+A L GL+ L L L P+T L +
Sbjct: 158 --AITDSALKPLSVLENLSTINLSTTKIDGSGLADLSGLKNLKTLVLSHSPITNEALAGV 215
Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284
+AL +L L L +S DG + + L LNLGF + D L L LTNL++LNL
Sbjct: 216 AALRNLTTLELWNTPISADGLKSLGTLTDLTKLNLGFTSLDDTGLAELATLTNLKALNLM 275
Query: 285 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSS------------------------GLRHL 320
G+ D GL +L+ + NL L L+DTQ+ + GLR L
Sbjct: 276 QTGVTDTGLSSLSQIKNLTNLNLNDTQITDAGMVAIARHKDLNELHLEGTRLTDVGLRAL 335
Query: 321 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 380
L L+ + + T ++D + +LAG LK L L + +++D GL +L L L L L
Sbjct: 336 KTLGELDVLQIGKTAVTDAGVEELAGFKHLKILRLGSTKVSDEGLKSLLGLEHLQSLGLG 395
Query: 381 GARITDSGAAYLRS 394
G ITD GA L S
Sbjct: 396 GTGITDVGAKQLAS 409
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 114/348 (32%), Positives = 182/348 (52%), Gaps = 10/348 (2%)
Query: 48 WMDVIASQG-------SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLE 100
W I++ G + L ++L + + D+GL L +NL++L+ ++D GL
Sbjct: 227 WNTPISADGLKSLGTLTDLTKLNLGFTSLDDTGLAELATLTNLKALNL-MQTGVTDTGLS 285
Query: 101 HLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 160
L + NLT+L+ + IT GM A A +L +L LE GL LK L +L+ L
Sbjct: 286 SLSQIKNLTNLNLN-DTQITDAGMVAIARHKDLNELHLEGTRLTDVGLRALKTLGELDVL 344
Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 220
I +TD+ ++ L+G +LK L++ +KV+D G+ L GL+ L L L G +T
Sbjct: 345 QIGKT-AVTDAGVEELAGFKHLKILRLGSTKVSDEGLKSLLGLEHLQSLGLGGTGITDVG 403
Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 280
L++L +L L+L+ ++D+G + + +L+ L+L +I+D+ + L L+
Sbjct: 404 AKQLASLTTLTGLDLDATAVTDEGVRELGGLSNLEYLSLISTKISDDGVSGLGAFKKLKM 463
Query: 281 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 340
L L + I DEGL L L L L LS TQV G++ L L +L+ + L T I+D
Sbjct: 464 LFLHNNQISDEGLKGLNDLSQLTTLYLSMTQVTDVGMKELKNLKHLKDLVLCDTQITDAG 523
Query: 341 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 388
L++L GLS L L + +TD L LTS LTHL + R +++G
Sbjct: 524 LKELTGLSELNVLVIRNVAVTDACLEHLTSFKNLTHLCIDVHRFSEAG 571
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 101/200 (50%), Gaps = 4/200 (2%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L S+ L G+ +TD G L + L LD + ++D G+ L GLSNL LS +
Sbjct: 389 LQSLGLGGTGITDVGAKQLASLTTLTGLDLD-ATAVTDEGVRELGGLSNLEYLSLI-STK 446
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
I+ G+ L L L GL L L +L +L + +TD MK L
Sbjct: 447 ISDDGVSGLGAFKKLKMLFLHNNQISDEGLKGLNDLSQLTTLYLSMTQ-VTDVGMKELKN 505
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
L +LK L + +++TD+G+ L GL +L +L + VT ACL+ L++ +L +L ++
Sbjct: 506 LKHLKDLVLCDTQITDAGLKELTGLSELNVLVIRNVAVTDACLEHLTSFKNLTHLCIDVH 565
Query: 239 QLSDDGCEKF-SKIGSLKVL 257
+ S+ G F + + +++VL
Sbjct: 566 RFSEAGLNAFKTSMPNVRVL 585
>gi|46447096|ref|YP_008461.1| hypothetical protein pc1462 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400737|emb|CAF24186.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 870
Score = 154 bits (388), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 144/381 (37%), Positives = 211/381 (55%), Gaps = 20/381 (5%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNF 90
ALQ+L L + + D + ++S ++L +DLSG D+TD+GL HL +LQ LD +
Sbjct: 385 ALQNLDLSECYLLKDTGLAHLSSL-TALQYLDLSGCDDLTDAGLAHLTPLVSLQHLDLSK 443
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLV 149
C ++ GL HL L L L +T G+ L L LDL C + GLV
Sbjct: 444 CENLTGDGLAHLTPLVALRHLGLSDCRNLTDAGLAHLTPLTALKHLDLSECKNLTDDGLV 503
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-----SCSKVTDSGIAYLKGLQ 204
+L L+ L+ L++K C +TD+ + L+ LT L+ L + C +TD G+A+L L
Sbjct: 504 HLSSLVALQYLSLKLCENLTDAGLAHLTSLTALEHLDLGLDFGYCQNLTDDGLAHLSSLT 563
Query: 205 KLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGFN 262
L L+L +T A L L++L +L +L+L+ C+ L+D+G + + +L+ L+L +
Sbjct: 564 ALKHLDLSWRENLTDAGLAHLTSLTALKHLDLSWCENLTDEGLAYLTPLVALQYLSLKGS 623
Query: 263 EITDECLVHLKGLTNLESLNLDSCG--IGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRH 319
+ITDE L HL L+ L L+L+ C GL +LT L NL+ L+LS + S L
Sbjct: 624 DITDEGLEHLAHLSALRHLSLNDCRRIYHGYGLAHLTTLVNLEHLDLSGCYSLSSFKLIF 683
Query: 320 LSGLTNLESINLS--FTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT--GL 374
LS L NL+ +NLS F DG L L L +L+ L+L + +TD GLA LTSL GL
Sbjct: 684 LSSLVNLQHLNLSGCFGLYHDG-LEDLTPLMNLQYLDLSSCINLTDKGLAYLTSLVGLGL 742
Query: 375 THLDLFGAR-ITDSGAAYLRS 394
HLDL G + ITD+G A+L S
Sbjct: 743 QHLDLSGCKEITDTGLAHLTS 763
Score = 144 bits (364), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 124/343 (36%), Positives = 184/343 (53%), Gaps = 16/343 (4%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
++TD+GL HL + L+ LD + C ++D GL HL L L LS + +T G+
Sbjct: 471 NLTDAGLAHLTPLTALKHLDLSECKNLTDDGLVHLSSLVALQYLSLKLCENLTDAGLAHL 530
Query: 128 AGLINLVKLDLE----RCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNL 182
L L LDL C + GL +L L L+ L++ W +TD+ + L+ LT L
Sbjct: 531 TSLTALEHLDLGLDFGYCQNLTDDGLAHLSSLTALKHLDLSWRENLTDAGLAHLTSLTAL 590
Query: 183 KSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-- 239
K L +S C +TD G+AYL L L L+L+G +T L+ L+ L +L +L+LN C+
Sbjct: 591 KHLDLSWCENLTDEGLAYLTPLVALQYLSLKGSDITDEGLEHLAHLSALRHLSLNDCRRI 650
Query: 240 LSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT 297
G + + +L+ L+L G ++ L+ L L NL+ LNL C G+ +GL +LT
Sbjct: 651 YHGYGLAHLTTLVNLEHLDLSGCYSLSSFKLIFLSSLVNLQHLNLSGCFGLYHDGLEDLT 710
Query: 298 GLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSFTG---ISDGSLRKLAGLSSLKSL 353
L NL+ L+LS + GL +L+ L L +L +G I+D L L L L+ L
Sbjct: 711 PLMNLQYLDLSSCINLTDKGLAYLTSLVGLGLQHLDLSGCKEITDTGLAHLTSLVGLEYL 770
Query: 354 NLDA-RQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRS 394
+L +TD GLA LTS GL +L+L G +ITD+G A+L S
Sbjct: 771 DLSWCENLTDKGLAYLTSFAGLKYLNLKGCKKITDAGLAHLTS 813
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 105/310 (33%), Positives = 156/310 (50%), Gaps = 11/310 (3%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
++TD GL HL + L+ LD ++ ++D GL HL L+ L L +T +G+
Sbjct: 550 NLTDDGLAHLSSLTALKHLDLSWRENLTDAGLAHLTSLTALKHLDLSWCENLTDEGLAYL 609
Query: 128 AGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD-SDMKPLSGLTNLKSLQ 186
L+ L L L+ GL +L L L L++ C I + L+ L NL+ L
Sbjct: 610 TPLVALQYLSLKGSDITDEGLEHLAHLSALRHLSLNDCRRIYHGYGLAHLTTLVNLEHLD 669
Query: 187 IS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDD 243
+S C ++ + +L L L LNL GC + L+ L+ L +L YL+L+ C L+D
Sbjct: 670 LSGCYSLSSFKLIFLSSLVNLQHLNLSGCFGLYHDGLEDLTPLMNLQYLDLSSCINLTDK 729
Query: 244 GCEKFSKIGSLKVLNL---GFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGL 299
G + + L + +L G EITD L HL L LE L+L C + D+GL LT
Sbjct: 730 GLAYLTSLVGLGLQHLDLSGCKEITDTGLAHLTSLVGLEYLDLSWCENLTDKGLAYLTSF 789
Query: 300 CNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNL-D 356
LK L L ++ +GL HL+ L L+ +NLS ++D L L L +L+ L L +
Sbjct: 790 AGLKYLNLKGCKKITDAGLAHLTSLVTLQRLNLSECVNLTDTGLAHLVSLVNLQDLELRE 849
Query: 357 ARQITDTGLA 366
+ ITDTGLA
Sbjct: 850 CKSITDTGLA 859
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 74/142 (52%), Gaps = 3/142 (2%)
Query: 33 LQDLCLGQYPGVNDKWMDVIAS-QGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNF 90
LQ L L + DK + + S G L +DLSG ++TD+GL HL L+ LD ++
Sbjct: 715 LQYLDLSSCINLTDKGLAYLTSLVGLGLQHLDLSGCKEITDTGLAHLTSLVGLEYLDLSW 774
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLV 149
C ++D GL +L + L L+ + IT G+ L+ L +L+L C + GL
Sbjct: 775 CENLTDKGLAYLTSFAGLKYLNLKGCKKITDAGLAHLTSLVTLQRLNLSECVNLTDTGLA 834
Query: 150 NLKGLMKLESLNIKWCNCITDS 171
+L L+ L+ L ++ C ITD+
Sbjct: 835 HLVSLVNLQDLELRECKSITDT 856
>gi|46447250|ref|YP_008615.1| hypothetical protein pc1616 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400891|emb|CAF24340.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 813
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 141/379 (37%), Positives = 208/379 (54%), Gaps = 17/379 (4%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGS-DVTDSGLIHLKDCSNLQSLDFNF 90
ALQ L L + + D + ++S ++L +DLS S + TD+GL HL +LQ LD +
Sbjct: 379 ALQHLDLSECYLLKDTGLAHLSSL-TALQYLDLSDSGNFTDAGLAHLTPLVSLQHLDLSK 437
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLV 149
++ GL HL L L L +T G+ L+ L LDL C + GLV
Sbjct: 438 SENLTGDGLAHLTPLVALRHLGLSDCRNLTDAGLAHLTPLVALRHLDLSECKNLTDDGLV 497
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-----CSKVTDSGIAYLKGLQ 204
+L L+ L+ L++K C +TD+ + L+ LT L+ L + C +TD G+A+L L
Sbjct: 498 HLSSLVALQYLSLKLCENLTDAGLAHLTPLTTLEHLDLGLDLGCCHNLTDDGLAHLSSLT 557
Query: 205 KLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGFN 262
L L+L +T A L L+ L +L +L+L+ C+ L+D+G + + +L+ L+L +
Sbjct: 558 ALKHLDLSWRENLTDAGLAHLTPLTALRHLDLSWCENLTDEGLAYLTPLVALQYLSLKGS 617
Query: 263 EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHL 320
+ITDE L HL L+ L L+L+ C I GL +LT L NL+ L+LS + S L +L
Sbjct: 618 DITDEGLEHLAHLSALRHLSLNDCRRINGYGLAHLTSLVNLEHLDLSGCYHLPSFQLIYL 677
Query: 321 SGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTG--LTH 376
S L NL+ +NLS G+ L L L +L+ L+L +TD GLA LTSL G L H
Sbjct: 678 SSLVNLQHLNLSECFGLCHDGLEDLTPLMNLQYLDLSGCINLTDQGLAYLTSLVGLDLQH 737
Query: 377 LDLFG-ARITDSGAAYLRS 394
LDL G +ITD+G A+L S
Sbjct: 738 LDLSGCKKITDTGLAHLTS 756
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 121/339 (35%), Positives = 185/339 (54%), Gaps = 15/339 (4%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
++TD+GL HL L+ LD + C ++D GL HL L L LS + +T G+
Sbjct: 465 NLTDAGLAHLTPLVALRHLDLSECKNLTDDGLVHLSSLVALQYLSLKLCENLTDAGLAHL 524
Query: 128 AGLINLVKLDLER----CTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNL 182
L L LDL C + GL +L L L+ L++ W +TD+ + L+ LT L
Sbjct: 525 TPLTTLEHLDLGLDLGCCHNLTDDGLAHLSSLTALKHLDLSWRENLTDAGLAHLTPLTAL 584
Query: 183 KSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC-QL 240
+ L +S C +TD G+AYL L L L+L+G +T L+ L+ L +L +L+LN C ++
Sbjct: 585 RHLDLSWCENLTDEGLAYLTPLVALQYLSLKGSDITDEGLEHLAHLSALRHLSLNDCRRI 644
Query: 241 SDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTG 298
+ G + + +L+ L+L G + L++L L NL+ LNL C G+ +GL +LT
Sbjct: 645 NGYGLAHLTSLVNLEHLDLSGCYHLPSFQLIYLSSLVNLQHLNLSECFGLCHDGLEDLTP 704
Query: 299 LCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSFTG---ISDGSLRKLAGLSSLKSLN 354
L NL+ L+LS + GL +L+ L L+ +L +G I+D L L L +L+ LN
Sbjct: 705 LMNLQYLDLSGCINLTDQGLAYLTSLVGLDLQHLDLSGCKKITDTGLAHLTSLVTLQHLN 764
Query: 355 L-DARQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAY 391
L + +TDTGLA L SL L +L+L + ITD+G A+
Sbjct: 765 LSECVNLTDTGLAHLVSLVNLQYLELRECKNITDAGLAH 803
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 73/214 (34%), Positives = 111/214 (51%), Gaps = 13/214 (6%)
Query: 48 WMDVIASQGSSLLS-------VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLE 100
W + + +G + L+ + L GSD+TD GL HL S L+ L N C +I+ GL
Sbjct: 591 WCENLTDEGLAYLTPLVALQYLSLKGSDITDEGLEHLAHLSALRHLSLNDCRRINGYGLA 650
Query: 101 HLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLES 159
HL L NL L + + + + L+NL L+L C + H GL +L LM L+
Sbjct: 651 HLTSLVNLEHLDLSGCYHLPSFQLIYLSSLVNLQHLNLSECFGLCHDGLEDLTPLMNLQY 710
Query: 160 LNIKWCNCITDSDMKPLSGLT--NLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP- 215
L++ C +TD + L+ L +L+ L +S C K+TD+G+A+L L L LNL C
Sbjct: 711 LDLSGCINLTDQGLAYLTSLVGLDLQHLDLSGCKKITDTGLAHLTSLVTLQHLNLSECVN 770
Query: 216 VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKF 248
+T L L +L +L YL L C+ ++D G +
Sbjct: 771 LTDTGLAHLVSLVNLQYLELRECKNITDAGLAHY 804
>gi|46447588|ref|YP_008953.1| hypothetical protein pc1954 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46401229|emb|CAF24678.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 704
Score = 151 bits (382), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 127/348 (36%), Positives = 192/348 (55%), Gaps = 11/348 (3%)
Query: 58 SLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+L +DLS ++T+ GL HL + LQ LD ++C Q++D GL +L L+ L L
Sbjct: 320 ALQHLDLSYCKNLTNVGLSHLAPLTALQHLDLSYCWQLADAGLVYLTPLTGLQHLDLSGY 379
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKP 175
+ +T G+ L L LDL C + GL +L L L+ LN++ C +TD +
Sbjct: 380 HKLTDAGLAHLTPLTALQCLDLSYCENLTDVGLAHLMPLKALQHLNLRNCRNLTDDGLAH 439
Query: 176 LSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYL 233
L+ LT L+ L +S C ++TD+G+A+L L L L+L C +T L L L +L +L
Sbjct: 440 LAPLTALQHLDLSYCWQLTDAGLAHLTPLTGLQRLDLSYCENLTDVGLAHLIPLKALQHL 499
Query: 234 NLNRCQ-LSDDGCEKFSKIGSLKVLNLG-FNEITDECLVHLKGLTNLESLNLDSC-GIGD 290
NL C+ L+DDG + + +L+ L+L N +TD L HL LT L+ L+L C +
Sbjct: 500 NLRNCRNLTDDGLVHLAPLTALQHLDLSDCNNLTDAGLAHLTPLTALQHLDLKYCINLTG 559
Query: 291 EGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLS 348
GL +L L L+ L+LS + + +GL HL LT L+ + LS+ ++D L L L+
Sbjct: 560 AGLAHLAFLTGLQYLDLSWCKNLIDAGLVHLKLLTALQYLGLSYCENLTDDGLAHLRSLT 619
Query: 349 SLKSLNL-DARQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLRS 394
+L+ L L + +TD GL L SLT L HLDL + +T G A+LR+
Sbjct: 620 ALQHLALIHYKNLTDAGLVHLRSLTSLQHLDLRYCQNLTGDGLAHLRT 667
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 123/334 (36%), Positives = 183/334 (54%), Gaps = 10/334 (2%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TD GL HL + LQ LD C ++D GL +L L+ L L+ +T G+
Sbjct: 232 ITDDGLAHLTPLTGLQHLDIRVCEYLTDDGLAYLTSLTGLQHLNLSGCYHLTDTGLAHLT 291
Query: 129 GLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
L L LDL C + GL +LK L L+ L++ +C +T+ + L+ LT L+ L +
Sbjct: 292 PLTGLQHLDLRICEYLTATGLAHLKPLKALQHLDLSYCKNLTNVGLSHLAPLTALQHLDL 351
Query: 188 S-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQ-LSDDG 244
S C ++ D+G+ YL L L L+L G +T A L L+ L +L L+L+ C+ L+D G
Sbjct: 352 SYCWQLADAGLVYLTPLTGLQHLDLSGYHKLTDAGLAHLTPLTALQCLDLSYCENLTDVG 411
Query: 245 CEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNL 302
+ +L+ LNL +TD+ L HL LT L+ L+L C + D GL +LT L L
Sbjct: 412 LAHLMPLKALQHLNLRNCRNLTDDGLAHLAPLTALQHLDLSYCWQLTDAGLAHLTPLTGL 471
Query: 303 KCLELSDTQ-VGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNL-DARQ 359
+ L+LS + + GL HL L L+ +NL + ++D L LA L++L+ L+L D
Sbjct: 472 QRLDLSYCENLTDVGLAHLIPLKALQHLNLRNCRNLTDDGLVHLAPLTALQHLDLSDCNN 531
Query: 360 ITDTGLAALTSLTGLTHLDL-FGARITDSGAAYL 392
+TD GLA LT LT L HLDL + +T +G A+L
Sbjct: 532 LTDAGLAHLTPLTALQHLDLKYCINLTGAGLAHL 565
Score = 148 bits (374), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 123/353 (34%), Positives = 193/353 (54%), Gaps = 11/353 (3%)
Query: 51 VIASQGSSLLSVDLSGSD-VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLT 109
+I + +++ S +D +TD+ L+ L++C NL+ L N C I+D GL HL L+ L
Sbjct: 188 IIIPFSKEIEALNFSNNDYLTDAHLLTLRNCENLKVLHLNACQAITDDGLAHLTPLTGLQ 247
Query: 110 SLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCI 168
L R +T G+ L L L+L C + GL +L L L+ L+++ C +
Sbjct: 248 HLDIRVCEYLTDDGLAYLTSLTGLQHLNLSGCYHLTDTGLAHLTPLTGLQHLDLRICEYL 307
Query: 169 TDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTA-ACLDSLSA 226
T + + L L L+ L +S C +T+ G+++L L L L+L C A A L L+
Sbjct: 308 TATGLAHLKPLKALQHLDLSYCKNLTNVGLSHLAPLTALQHLDLSYCWQLADAGLVYLTP 367
Query: 227 LGSLFYLNLN-RCQLSDDGCEKFSKIGSLKVLNLGFNE-ITDECLVHLKGLTNLESLNLD 284
L L +L+L+ +L+D G + + +L+ L+L + E +TD L HL L L+ LNL
Sbjct: 368 LTGLQHLDLSGYHKLTDAGLAHLTPLTALQCLDLSYCENLTDVGLAHLMPLKALQHLNLR 427
Query: 285 SC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSF-TGISDGSL 341
+C + D+GL +L L L+ L+LS Q+ +GL HL+ LT L+ ++LS+ ++D L
Sbjct: 428 NCRNLTDDGLAHLAPLTALQHLDLSYCWQLTDAGLAHLTPLTGLQRLDLSYCENLTDVGL 487
Query: 342 RKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGA-RITDSGAAYL 392
L L +L+ LNL + R +TD GL L LT L HLDL +TD+G A+L
Sbjct: 488 AHLIPLKALQHLNLRNCRNLTDDGLVHLAPLTALQHLDLSDCNNLTDAGLAHL 540
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 126/376 (33%), Positives = 193/376 (51%), Gaps = 12/376 (3%)
Query: 13 ELVYSRCLTEVSLEAFRD-CALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVT 70
+L Y + LT V L ALQ L L + D + V + + L +DLSG +T
Sbjct: 325 DLSYCKNLTNVGLSHLAPLTALQHLDLSYCWQLADAGL-VYLTPLTGLQHLDLSGYHKLT 383
Query: 71 DSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL 130
D+GL HL + LQ LD ++C ++D GL HL L L L+ R +T G+ A L
Sbjct: 384 DAGLAHLTPLTALQCLDLSYCENLTDVGLAHLMPLKALQHLNLRNCRNLTDDGLAHLAPL 443
Query: 131 INLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-S 188
L LDL C ++ GL +L L L+ L++ +C +TD + L L L+ L + +
Sbjct: 444 TALQHLDLSYCWQLTDAGLAHLTPLTGLQRLDLSYCENLTDVGLAHLIPLKALQHLNLRN 503
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCE 246
C +TD G+ +L L L L+L C +T A L L+ L +L +L+L C L+ G
Sbjct: 504 CRNLTDDGLVHLAPLTALQHLDLSDCNNLTDAGLAHLTPLTALQHLDLKYCINLTGAGLA 563
Query: 247 KFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKC 304
+ + L+ L+L + + D LVHLK LT L+ L L C + D+GL +L L L+
Sbjct: 564 HLAFLTGLQYLDLSWCKNLIDAGLVHLKLLTALQYLGLSYCENLTDDGLAHLRSLTALQH 623
Query: 305 LELSDTQ-VGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNL-DARQIT 361
L L + + +GL HL LT+L+ ++L + ++ L L L++L+ L L + +T
Sbjct: 624 LALIHYKNLTDAGLVHLRSLTSLQHLDLRYCQNLTGDGLAHLRTLTALQYLALTQYKNLT 683
Query: 362 DTGLAALTSLTGLTHL 377
D GLA +L T+L
Sbjct: 684 DDGLARFKTLASSTNL 699
>gi|149176715|ref|ZP_01855326.1| leucine-rich repeat domain protein [Planctomyces maris DSM 8797]
gi|148844356|gb|EDL58708.1| leucine-rich repeat domain protein [Planctomyces maris DSM 8797]
Length = 1266
Score = 151 bits (381), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 110/336 (32%), Positives = 162/336 (48%), Gaps = 27/336 (8%)
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
S+ G+ + D+ + HLK L+S+ F I+D HL GLS L +L AIT
Sbjct: 433 SIRFFGNQIVDAQVKHLKHVPRLKSVSF-ISTSITDDCTRHLSGLSELETLQLP-GTAIT 490
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
+G+ L +L LDL R GLV+LK +L++LN+
Sbjct: 491 DKGLATLNDLKSLENLDLSRSGITDAGLVSLKKFPQLKTLNL------------------ 532
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
++VTD+G+ +LK L KL L L VT L L L L L+L+ L
Sbjct: 533 -------GSTRVTDAGLTHLKALPKLESLKLYNTSVTGTGLSELVTLPKLKTLDLSLTPL 585
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
++ G + SK+ L+ L+L +I + HL LT L +L LD I D L ++ L
Sbjct: 586 TETGLQTVSKLIHLQSLSLTKTKINSAGVKHLVPLTELTTLKLDYTQIDDTALASIAKLT 645
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
L+ L L T++ +G+ HL L L+ ++L T +S+ L+ L L L L L I
Sbjct: 646 KLRSLNLRKTEITDTGMVHLENLKPLKVLSLDETRVSNAGLKSLQSLQQLYRLGLRETDI 705
Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRSKF 396
D GL L+S+ L LDL+G ++TD+G AY K
Sbjct: 706 DDAGLKTLSSIFNLKSLDLYGTKVTDTGMAYFHDKL 741
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 126/398 (31%), Positives = 187/398 (46%), Gaps = 47/398 (11%)
Query: 42 PGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEH 101
P ++DK + + S L S+ L+ + V+D GL L + L SL I+D L H
Sbjct: 272 PHIDDKSLACLKGL-SGLKSLTLNQTSVSDQGLQILNELKGLTSLTI-MQSPITDAALPH 329
Query: 102 LRGLSNLTSLSFRR-----------------------NNAITAQGMKAFAGLINLVKLDL 138
L GLS LTSL+ R + +T+ GM + K++
Sbjct: 330 LTGLSRLTSLNLARTAVTDAGMEHIIKLKQLKKLNLISTGVTSAGMARVHAALPKCKIET 389
Query: 139 ERCT--------------------RIHGGLVNLKGLMKLESL-NIKWC-NCITDSDMKPL 176
+ T I V G + E +I++ N I D+ +K L
Sbjct: 390 GKATAPGDSTQAQAAIAALKAQGAHIQNQRVFKNGKLTSEYFTSIRFFGNQIVDAQVKHL 449
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LKS+ + +TD +L GL +L L L G +T L +L+ L SL L+L+
Sbjct: 450 KHVPRLKSVSFISTSITDDCTRHLSGLSELETLQLPGTAITDKGLATLNDLKSLENLDLS 509
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
R ++D G K LK LNLG +TD L HLK L LESL L + + GL L
Sbjct: 510 RSGITDAGLVSLKKFPQLKTLNLGSTRVTDAGLTHLKALPKLESLKLYNTSVTGTGLSEL 569
Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
L LK L+LS T + +GL+ +S L +L+S++L+ T I+ ++ L L+ L +L LD
Sbjct: 570 VTLPKLKTLDLSLTPLTETGLQTVSKLIHLQSLSLTKTKINSAGVKHLVPLTELTTLKLD 629
Query: 357 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRS 394
QI DT LA++ LT L L+L ITD+G +L +
Sbjct: 630 YTQIDDTALASIAKLTKLRSLNLRKTEITDTGMVHLEN 667
Score = 120 bits (302), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 119/424 (28%), Positives = 188/424 (44%), Gaps = 71/424 (16%)
Query: 41 YPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC--------- 91
Y ++D + IA + + L S++L +++TD+G++HL++ L+ L +
Sbjct: 630 YTQIDDTALASIA-KLTKLRSLNLRKTEITDTGMVHLENLKPLKVLSLDETRVSNAGLKS 688
Query: 92 --------------IQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKL 136
I D GL+ L + NL SL +T GM F LI L
Sbjct: 689 LQSLQQLYRLGLRETDIDDAGLKTLSSIFNLKSLDLY-GTKVTDTGMAYFHDKLIKPTDL 747
Query: 137 DLERCTRIHGGLVNLKG--------------------LMKL----------------ESL 160
+L G+ LK L KL E L
Sbjct: 748 NLHGTGVTEAGVAMLKQQCPNCRIQASPPLDSGIQSILAKLKKSGGFYTRRRLPENAEQL 807
Query: 161 NIKWCN--------CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
+++ D + L+GL L L ++ + +TD+G+ +LK + +L +L L
Sbjct: 808 VVRFYPLPGREKKLSPLDERLSLLNGLKTLYELDVAGADLTDAGLKHLKHVPELRVLKLN 867
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
G T L L+ L L L + +++D + ++ LK+ L N+IT+ L HL
Sbjct: 868 GGNFTEEGLKQLTQLKKLEVLQIENAGITNDQLIQLKEMTQLKIFILPQNQITEHGLKHL 927
Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 332
GLTNL+ LNL I +G+V+L L NL+ L L T+V GL L L L ++ L
Sbjct: 928 SGLTNLKVLNLSQNRIYSDGMVHLASLENLRSLALEHTRVADQGLEDLLRLPRLNTLILD 987
Query: 333 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA-Y 391
T I+DG L ++SL L+L++ ITD GL L +L GL LDL ++++ G +
Sbjct: 988 GTTITDGGTPLLRKMTSLGMLSLNSTYITDRGLKDLETLRGLYRLDLNDTKVSEDGVKNF 1047
Query: 392 LRSK 395
RS+
Sbjct: 1048 QRSQ 1051
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 113/362 (31%), Positives = 170/362 (46%), Gaps = 33/362 (9%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L S+ L+ + + +G+ HL + L +L ++ QI D L + L+ L SL+ R+
Sbjct: 599 LQSLSLTKTKINSAGVKHLVPLTELTTLKLDYT-QIDDTALASIAKLTKLRSLNLRKTE- 656
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
IT GM L L L L+ + GL +L+ L +L L ++ + I D+ +K LS
Sbjct: 657 ITDTGMVHLENLKPLKVLSLDETRVSNAGLKSLQSLQQLYRLGLRETD-IDDAGLKTLSS 715
Query: 179 LTNLKSLQISCSKVTDSGIAYLK-GLQKLTLLNLEGCPVTAA------------------ 219
+ NLKSL + +KVTD+G+AY L K T LNL G VT A
Sbjct: 716 IFNLKSLDLYGTKVTDTGMAYFHDKLIKPTDLNLHGTGVTEAGVAMLKQQCPNCRIQASP 775
Query: 220 CLDS--LSALGSL-----FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
LDS S L L FY R +L ++ + + L + + DE L L
Sbjct: 776 PLDSGIQSILAKLKKSGGFY---TRRRLPENAEQLVVRFYPLPGREKKLSPL-DERLSLL 831
Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 332
GL L L++ + D GL +L + L+ L+L+ GL+ L+ L LE + +
Sbjct: 832 NGLKTLYELDVAGADLTDAGLKHLKHVPELRVLKLNGGNFTEEGLKQLTQLKKLEVLQIE 891
Query: 333 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
GI++ L +L ++ LK L QIT+ GL L+ LT L L+L RI G +L
Sbjct: 892 NAGITNDQLIQLKEMTQLKIFILPQNQITEHGLKHLSGLTNLKVLNLSQNRIYSDGMVHL 951
Query: 393 RS 394
S
Sbjct: 952 AS 953
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 105/381 (27%), Positives = 176/381 (46%), Gaps = 55/381 (14%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFN------------------FCIQISDGGL 99
+L +D++G+D+TD+GL HLK L+ L N +QI + G+
Sbjct: 836 TLYELDVAGADLTDAGLKHLKHVPELRVLKLNGGNFTEEGLKQLTQLKKLEVLQIENAGI 895
Query: 100 --EHLRGLSNLTSLSFR--RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLM 155
+ L L +T L N IT G+K +GL NL L+L + G+V+L L
Sbjct: 896 TNDQLIQLKEMTQLKIFILPQNQITEHGLKHLSGLTNLKVLNLSQNRIYSDGMVHLASLE 955
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215
L SL ++ + D ++ L L L +L + + +TD G L+ + L +L+L
Sbjct: 956 NLRSLALEHTR-VADQGLEDLLRLPRLNTLILDGTTITDGGTPLLRKMTSLGMLSLNSTY 1014
Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK--------------------IGSLK 255
+T L L L L+ L+LN ++S+DG + F + I LK
Sbjct: 1015 ITDRGLKDLETLRGLYRLDLNDTKVSEDGVKNFQRSQPKCNIEYAAPLASSLQYVIQELK 1074
Query: 256 -------VLNLGFNEITD--ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 306
V+N G + + + E HL+G+ + + + + D L ++ + +LK L
Sbjct: 1075 EAGANVNVINQGHHYVIESVEFPNHLQGIFAIHN-RAEKAKVFDSCLKRISEMKDLKRLS 1133
Query: 307 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 366
+ + ++ L ++ LT L ++LS + I D ++ L GL +L+ L L+ QITD G+A
Sbjct: 1134 MHWAEFDNTKLEYIKNLTYLSELDLSGSRIPDQGIKDLKGLVNLQKLKLEHTQITDAGVA 1193
Query: 367 ALT--SLTGLTHLDLFGARIT 385
L L L LDL ++ T
Sbjct: 1194 QLAQLQLNRLYSLDLDHSKTT 1214
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 82/265 (30%), Positives = 121/265 (45%), Gaps = 38/265 (14%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
N ITD+ +K ++ L +++ L K++ SG+ L L+ L L + CP+ L
Sbjct: 66 NKITDTQIKFINHLKDIRKLGFYNVKISGSGLQSLTNLKHLQNLEFQNCPLEDDAFQHLK 125
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
+L +L + L+D + L+VL L +I+D L HL L L SLNL
Sbjct: 126 QFPALTHLFVRHVPLTDQCLVHLKDLTQLEVLWLFATQISDSGLEHLNNLKELNSLNLYQ 185
Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSG----------------------------- 316
I + GL +L+ L LK LE+++T+V S+G
Sbjct: 186 TKISNAGLTHLSELKKLKQLEVNETKVTSAGVAELQEAIPECKILFDRPVLPAHLKVARQ 245
Query: 317 LRHLSGLTN---------LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 367
++ L G L SI+LS I D SL L GLS LKSL L+ ++D GL
Sbjct: 246 VKSLGGFVRYQDLDQHRLLSSISLSRPHIDDKSLACLKGLSGLKSLTLNQTSVSDQGLQI 305
Query: 368 LTSLTGLTHLDLFGARITDSGAAYL 392
L L GLT L + + ITD+ +L
Sbjct: 306 LNELKGLTSLTIMQSPITDAALPHL 330
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 93/324 (28%), Positives = 166/324 (51%), Gaps = 25/324 (7%)
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR----RN 116
SV + + +TD+ + + +++ L F + ++IS GL+ L L +L +L F+ +
Sbjct: 60 SVSFTNNKITDTQIKFINHLKDIRKLGF-YNVKISGSGLQSLTNLKHLQNLEFQNCPLED 118
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+A Q +K F L +L + LV+LK L +LE L + + I+DS ++ L
Sbjct: 119 DAF--QHLKQFPALTHLF---VRHVPLTDQCLVHLKDLTQLEVLWL-FATQISDSGLEHL 172
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL----DSLSALGSLF- 231
+ L L SL + +K++++G+ +L L+KL L + VT+A + +++ LF
Sbjct: 173 NNLKELNSLNLYQTKISNAGLTHLSELKKLKQLEVNETKVTSAGVAELQEAIPECKILFD 232
Query: 232 ------YLNLNRCQLSDDGCEKFSKIGSLKVLN---LGFNEITDECLVHLKGLTNLESLN 282
+L + R S G ++ + ++L+ L I D+ L LKGL+ L+SL
Sbjct: 233 RPVLPAHLKVARQVKSLGGFVRYQDLDQHRLLSSISLSRPHIDDKSLACLKGLSGLKSLT 292
Query: 283 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 342
L+ + D+GL L L L L + + + + L HL+GL+ L S+NL+ T ++D +
Sbjct: 293 LNQTSVSDQGLQILNELKGLTSLTIMQSPITDAALPHLTGLSRLTSLNLARTAVTDAGME 352
Query: 343 KLAGLSSLKSLNLDARQITDTGLA 366
+ L LK LNL + +T G+A
Sbjct: 353 HIIKLKQLKKLNLISTGVTSAGMA 376
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 86/303 (28%), Positives = 141/303 (46%), Gaps = 20/303 (6%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
+I+D ++ + L ++ L F N I+ G+++ L +L L+ + C +LK
Sbjct: 67 KITDTQIKFINHLKDIRKLGFY-NVKISGSGLQSLTNLKHLQNLEFQNCPLEDDAFQHLK 125
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
L L ++ +TD + L LT L+ L + ++++DSG+ +L L++L LNL
Sbjct: 126 QFPALTHLFVRHV-PLTDQCLVHLKDLTQLEVLWLFATQISDSGLEHLNNLKELNSLNLY 184
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK-IGSLKVLNLGFNEITDECLVH 271
++ A L LS L L L +N +++ G + + I K+L F+ H
Sbjct: 185 QTKISNAGLTHLSELKKLKQLEVNETKVTSAGVAELQEAIPECKIL---FDRPV--LPAH 239
Query: 272 LKGLTNLESLNLDSCGIGDEGLVNLTGLCN---LKCLELSDTQVGSSGLRHLSGLTNLES 328
LK ++SL G V L L + LS + L L GL+ L+S
Sbjct: 240 LKVARQVKSLG---------GFVRYQDLDQHRLLSSISLSRPHIDDKSLACLKGLSGLKS 290
Query: 329 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 388
+ L+ T +SD L+ L L L SL + ITD L LT L+ LT L+L +TD+G
Sbjct: 291 LTLNQTSVSDQGLQILNELKGLTSLTIMQSPITDAALPHLTGLSRLTSLNLARTAVTDAG 350
Query: 389 AAY 391
+
Sbjct: 351 MEH 353
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 88/343 (25%), Positives = 148/343 (43%), Gaps = 36/343 (10%)
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN---- 116
S++L + ++++GL HL + L+ L+ N +++ G+ L+ + F R
Sbjct: 180 SLNLYQTKISNAGLTHLSELKKLKQLEVNET-KVTSAGVAELQEAIPECKILFDRPVLPA 238
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+ A+ +K+ G + LD R L S+++ + I D + L
Sbjct: 239 HLKVARQVKSLGGFVRYQDLDQHRL---------------LSSISLSRPH-IDDKSLACL 282
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
GL+ LKSL ++ + V+D G+ L L+ LT L + P+T A L L+ L L LNL
Sbjct: 283 KGLSGLKSLTLNQTSVSDQGLQILNELKGLTSLTIMQSPITDAALPHLTGLSRLTSLNLA 342
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
R ++D G E K+ LK LNL +T + + L C I + G
Sbjct: 343 RTAVTDAGMEHIIKLKQLKKLNLISTGVTSAGMARVHA-------ALPKCKI-ETGKATA 394
Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS-------DGSLRKLAGLSS 349
G ++ + + +++ N + + FT I D ++ L +
Sbjct: 395 PGDSTQAQAAIAALKAQGAHIQNQRVFKNGKLTSEYFTSIRFFGNQIVDAQVKHLKHVPR 454
Query: 350 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
LKS++ + ITD L+ L+ L L L G ITD G A L
Sbjct: 455 LKSVSFISTSITDDCTRHLSGLSELETLQLPGTAITDKGLATL 497
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 70/129 (54%), Gaps = 3/129 (2%)
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
+K + + +L +L + + L +K L L L++ I D +K L GL NL+
Sbjct: 1120 LKRISEMKDLKRLSMHWAEFDNTKLEYIKNLTYLSELDLSGSR-IPDQGIKDLKGLVNLQ 1178
Query: 184 SLQISCSKVTDSGIAYLKGLQ--KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
L++ +++TD+G+A L LQ +L L+L+ TAACL+SL + L +L+L +LS
Sbjct: 1179 KLKLEHTQITDAGVAQLAQLQLNRLYSLDLDHSKTTAACLESLKDMQRLRFLSLQHLELS 1238
Query: 242 DDGCEKFSK 250
EKF +
Sbjct: 1239 AADLEKFKQ 1247
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 71/147 (48%), Gaps = 3/147 (2%)
Query: 251 IGSLK-VLNLGFN--EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 307
I LK + LGF +I+ L L L +L++L +C + D+ +L L L +
Sbjct: 76 INHLKDIRKLGFYNVKISGSGLQSLTNLKHLQNLEFQNCPLEDDAFQHLKQFPALTHLFV 135
Query: 308 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 367
+ L HL LT LE + L T ISD L L L L SLNL +I++ GL
Sbjct: 136 RHVPLTDQCLVHLKDLTQLEVLWLFATQISDSGLEHLNNLKELNSLNLYQTKISNAGLTH 195
Query: 368 LTSLTGLTHLDLFGARITDSGAAYLRS 394
L+ L L L++ ++T +G A L+
Sbjct: 196 LSELKKLKQLEVNETKVTSAGVAELQE 222
Score = 42.4 bits (98), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 58/116 (50%)
Query: 277 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 336
++S++ + I D + + L +++ L + ++ SGL+ L+ L +L+++ +
Sbjct: 57 KIDSVSFTNNKITDTQIKFINHLKDIRKLGFYNVKISGSGLQSLTNLKHLQNLEFQNCPL 116
Query: 337 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
D + + L +L L + +TD L L LT L L LF +I+DSG +L
Sbjct: 117 EDDAFQHLKQFPALTHLFVRHVPLTDQCLVHLKDLTQLEVLWLFATQISDSGLEHL 172
>gi|24461848|gb|AAN62335.1|AF506028_2 CTV.1 [Citrus trifoliata]
Length = 205
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 98/168 (58%), Positives = 103/168 (61%), Gaps = 56/168 (33%)
Query: 227 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 286
LGSLFYLNLNRCQLSDDGCEKFS NLGFNEITDECLV+ +LDSC
Sbjct: 1 LGSLFYLNLNRCQLSDDGCEKFS--------NLGFNEITDECLVY----------HLDSC 42
Query: 287 GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG 346
GIGDEGLVN LS T + LR L+GL
Sbjct: 43 GIGDEGLVNY----------LSFTGISDGSLRKLAGL----------------------- 69
Query: 347 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRS 394
SSLKSLNLDARQITDTGLAALTS HLDLFGARITDSGAAYLR+
Sbjct: 70 -SSLKSLNLDARQITDTGLAALTS----AHLDLFGARITDSGAAYLRN 112
>gi|46447199|ref|YP_008564.1| hypothetical protein pc1565 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400840|emb|CAF24289.1| hypothetical protein pc1565 [Candidatus Protochlamydia amoebophila
UWE25]
Length = 1143
Score = 148 bits (374), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 139/365 (38%), Positives = 201/365 (55%), Gaps = 12/365 (3%)
Query: 20 LTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHL 77
LT+ L A +DC L+ L L + D + + S +L +DL G +TDSGL HL
Sbjct: 767 LTDAHLLALKDCKNLKVLRLHECRNFTDAGLAHL-SPLVALQHLDLGGCYKITDSGLAHL 825
Query: 78 KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLD 137
LQ LD C +I+D GL +L L L L+ R +T G+ + L+ L LD
Sbjct: 826 SRLVALQHLDLGGCYEITDSGLTYLSRLVALQHLNLNRCVCLTDDGLAYLSHLVALQYLD 885
Query: 138 LERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDS 195
L+RC +I GL +L L+ L+ LN+ CN +TDS + LS LT+LK L + C+K+TDS
Sbjct: 886 LDRCWKITDRGLAHLSSLLALQHLNLGCCNNLTDSGLAHLSHLTSLKHLDLRDCAKLTDS 945
Query: 196 GIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGS 253
G+A+L L L LNL C +T L LS L +L +L+L C +++D G S + +
Sbjct: 946 GLAHLSLLVNLQYLNLNRCNNLTDRGLAHLSHLVALQHLDLGECYKITDSGLAHLSLLVN 1005
Query: 254 LKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLEL-SDT 310
L+ LNL + +TD L HL L L+ LNL+ C + D+GL L+ L L+ L L S
Sbjct: 1006 LQYLNLNRCDNLTDRGLAHLSRLVTLQHLNLNCCVCLTDDGLAYLSPLVALRHLNLRSCD 1065
Query: 311 QVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAAL 368
+ S+GL HL+ L L+ +NLS+ ++D L L L+SLK L+L + T +GLA
Sbjct: 1066 NLTSAGLAHLTPLIALQYLNLSYCDSLNDNGLTHLTRLASLKHLDLSECPYFTISGLAHF 1125
Query: 369 TSLTG 373
+L
Sbjct: 1126 KALAA 1130
Score = 145 bits (365), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 128/320 (40%), Positives = 179/320 (55%), Gaps = 10/320 (3%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+ TD+GL HL LQ LD C +I+D GL +L L L L+ +T G+
Sbjct: 226 NFTDAGLAHLSRLVALQHLDLGGCYKITDSGLTYLSRLVALQHLNLNCCVCLTDDGLAYL 285
Query: 128 AGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
+ L+ L LDL C +I GL +L L+ L+ LN+ CN +TDS + LS LT+LK L
Sbjct: 286 SHLVALQHLDLGECYKITDSGLAHLSSLLALQHLNLGCCNNLTDSGLAHLSHLTSLKHLD 345
Query: 187 I-SCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDD 243
+ C+K+TDSG+A+L L L LNL C +T L LS L +L YL+L C +L+
Sbjct: 346 LRDCAKLTDSGLAHLSLLVNLQYLNLNRCYNLTDRGLSHLSHLVALQYLDLGLCKKLTSS 405
Query: 244 GCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCN 301
G S + +L+ L+L EITD L HL L L+ LNL+ C + D+GL L+ L
Sbjct: 406 GLAHLSPLVALQYLDLDRCGEITDRGLAHLSRLVALQHLNLNCCACLTDDGLAYLSPLVA 465
Query: 302 LKCLELSDT-QVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNL-DAR 358
L+ L L + S+GL HL+ L L+ +NLS+ ++D L L L+SLK L+L +
Sbjct: 466 LRHLNLRCCGNLTSAGLAHLTPLIALQYLNLSYCDSLNDNGLTHLTRLASLKHLDLSECP 525
Query: 359 QITDTGLAALTSL-TGLTHL 377
TD+GLA T+L T LTH
Sbjct: 526 YFTDSGLAHFTALATSLTHF 545
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 87/222 (39%), Positives = 126/222 (56%), Gaps = 7/222 (3%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
+++TDSGL HL ++L+ LD C +++D GL HL L NL L+ R N +T +G+
Sbjct: 915 NNLTDSGLAHLSHLTSLKHLDLRDCAKLTDSGLAHLSLLVNLQYLNLNRCNNLTDRGLAH 974
Query: 127 FAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
+ L+ L LDL C +I GL +L L+ L+ LN+ C+ +TD + LS L L+ L
Sbjct: 975 LSHLVALQHLDLGECYKITDSGLAHLSLLVNLQYLNLNRCDNLTDRGLAHLSRLVTLQHL 1034
Query: 186 QISCSK-VTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSD 242
++C +TD G+AYL L L LNL C +T+A L L+ L +L YLNL+ C L+D
Sbjct: 1035 NLNCCVCLTDDGLAYLSPLVALRHLNLRSCDNLTSAGLAHLTPLIALQYLNLSYCDSLND 1094
Query: 243 DGCEKFSKIGSLKVLNLG-FNEITDECLVHLKGLTNLESLNL 283
+G +++ SLK L+L T L H K L SLNL
Sbjct: 1095 NGLTHLTRLASLKHLDLSECPYFTISGLAHFKALA--ASLNL 1134
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 81/215 (37%), Positives = 120/215 (55%), Gaps = 5/215 (2%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
+++TDSGL HL ++L+ LD C +++D GL HL L NL L+ R +T +G+
Sbjct: 325 NNLTDSGLAHLSHLTSLKHLDLRDCAKLTDSGLAHLSLLVNLQYLNLNRCYNLTDRGLSH 384
Query: 127 FAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
+ L+ L LDL C ++ GL +L L+ L+ L++ C ITD + LS L L+ L
Sbjct: 385 LSHLVALQYLDLGLCKKLTSSGLAHLSPLVALQYLDLDRCGEITDRGLAHLSRLVALQHL 444
Query: 186 QISCSK-VTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSD 242
++C +TD G+AYL L L LNL C +T+A L L+ L +L YLNL+ C L+D
Sbjct: 445 NLNCCACLTDDGLAYLSPLVALRHLNLRCCGNLTSAGLAHLTPLIALQYLNLSYCDSLND 504
Query: 243 DGCEKFSKIGSLKVLNLG-FNEITDECLVHLKGLT 276
+G +++ SLK L+L TD L H L
Sbjct: 505 NGLTHLTRLASLKHLDLSECPYFTDSGLAHFTALA 539
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 99/256 (38%), Positives = 141/256 (55%), Gaps = 9/256 (3%)
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQ 204
L+ LK L+ L + C TD+ + LS L L+ L + C K+TDSG+ YL L
Sbjct: 205 AHLLALKDCKNLKVLRLHECRNFTDAGLAHLSRLVALQHLDLGGCYKITDSGLTYLSRLV 264
Query: 205 KLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGF- 261
L LNL C +T L LS L +L +L+L C +++D G S + +L+ LNLG
Sbjct: 265 ALQHLNLNCCVCLTDDGLAYLSHLVALQHLDLGECYKITDSGLAHLSSLLALQHLNLGCC 324
Query: 262 NEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRH 319
N +TD L HL LT+L+ L+L C + D GL +L+ L NL+ L L+ + GL H
Sbjct: 325 NNLTDSGLAHLSHLTSLKHLDLRDCAKLTDSGLAHLSLLVNLQYLNLNRCYNLTDRGLSH 384
Query: 320 LSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHL 377
LS L L+ ++L ++ L L+ L +L+ L+LD +ITD GLA L+ L L HL
Sbjct: 385 LSHLVALQYLDLGLCKKLTSSGLAHLSPLVALQYLDLDRCGEITDRGLAHLSRLVALQHL 444
Query: 378 DL-FGARITDSGAAYL 392
+L A +TD G AYL
Sbjct: 445 NLNCCACLTDDGLAYL 460
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 63/163 (38%), Positives = 85/163 (52%), Gaps = 6/163 (3%)
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGL 293
N L+D +LKVL L TD L HL L L+ L+L C I D GL
Sbjct: 198 NNAYLTDAHLLALKDCKNLKVLRLHECRNFTDAGLAHLSRLVALQHLDLGGCYKITDSGL 257
Query: 294 VNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLK 351
L+ L L+ L L+ + GL +LS L L+ ++L I+D L L+ L +L+
Sbjct: 258 TYLSRLVALQHLNLNCCVCLTDDGLAYLSHLVALQHLDLGECYKITDSGLAHLSSLLALQ 317
Query: 352 SLNLDA-RQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYL 392
LNL +TD+GLA L+ LT L HLDL A++TDSG A+L
Sbjct: 318 HLNLGCCNNLTDSGLAHLSHLTSLKHLDLRDCAKLTDSGLAHL 360
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 40/70 (57%), Gaps = 3/70 (4%)
Query: 326 LESINLSFTG-ISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFG-A 382
+ES++ S ++D L L +LK L L + R TD GLA L+ L L HLDL G
Sbjct: 191 IESLDFSNNAYLTDAHLLALKDCKNLKVLRLHECRNFTDAGLAHLSRLVALQHLDLGGCY 250
Query: 383 RITDSGAAYL 392
+ITDSG YL
Sbjct: 251 KITDSGLTYL 260
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 41/70 (58%), Gaps = 3/70 (4%)
Query: 326 LESINLSFTG-ISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFG-A 382
+ES++ S ++D L L +LK L L + R TD GLA L+ L L HLDL G
Sbjct: 756 IESLDFSNNAYLTDAHLLALKDCKNLKVLRLHECRNFTDAGLAHLSPLVALQHLDLGGCY 815
Query: 383 RITDSGAAYL 392
+ITDSG A+L
Sbjct: 816 KITDSGLAHL 825
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 335 GISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYL 392
+D L L+ L +L+ L+L +ITD+GLA L+ L L HLDL G ITDSG YL
Sbjct: 791 NFTDAGLAHLSPLVALQHLDLGGCYKITDSGLAHLSRLVALQHLDLGGCYEITDSGLTYL 850
Score = 39.7 bits (91), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 37/76 (48%)
Query: 65 SGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM 124
S ++T +GL HL LQ L+ ++C ++D GL HL L++L L T G+
Sbjct: 1063 SCDNLTSAGLAHLTPLIALQYLNLSYCDSLNDNGLTHLTRLASLKHLDLSECPYFTISGL 1122
Query: 125 KAFAGLINLVKLDLER 140
F L + L + R
Sbjct: 1123 AHFKALAASLNLKIIR 1138
>gi|59802561|gb|AAX07517.1| putative regulatory subunit [Gemmata sp. Wa1-1]
Length = 402
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 112/290 (38%), Positives = 161/290 (55%), Gaps = 2/290 (0%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
R +LT L+ R +T G+K L L LDL R GL L+GL L + I
Sbjct: 115 RDFISLTGLNLRFTK-VTDLGLKEMRSLSKLTVLDLGRTKVTDAGLQELRGLTNLTTW-I 172
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
+ +TD+ +K LSGL NL L + +KVT G+ LKGL LT L+L G T A L
Sbjct: 173 SAPHEVTDAGLKELSGLANLTELNLRFTKVTYLGLKELKGLTNLTSLDLFGTSTTDASLA 232
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282
L L +L LNL+ +++D G ++ + + +L L+L F ++TD L LKGL+NL L+
Sbjct: 233 ELKGLTNLTELNLSDTKVTDAGLQELTGLANLASLDLRFTKVTDAGLQKLKGLSNLAVLD 292
Query: 283 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 342
L + D GL L L L L+L T+V +GL+ L+GL NL S++L T ++D L+
Sbjct: 293 LFGTSVTDAGLKELGRLSKLTVLDLGSTKVTGTGLKELTGLANLTSLHLRLTAVTDAGLK 352
Query: 343 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
+L+GL++L SL+L ++DT L L L+ LT L L +TD G L
Sbjct: 353 ELSGLANLTSLDLFGTPVSDTDLKELKKLSKLTSLRLGRTAVTDVGIKEL 402
Score = 141 bits (355), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 122/330 (36%), Positives = 169/330 (51%), Gaps = 32/330 (9%)
Query: 39 GQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGG 98
G PG D I SL ++L + VTD GL ++ S L LD +++D G
Sbjct: 105 GDGPGAPGTSRDFI-----SLTGLNLRFTKVTDLGLKEMRSLSKLTVLDLGRT-KVTDAG 158
Query: 99 LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158
L+ LRGL+NLT+ + +T G+K +GL NL +L+L R T++
Sbjct: 159 LQELRGLTNLTTW-ISAPHEVTDAGLKELSGLANLTELNL-RFTKV-------------- 202
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
T +K L GLTNL SL + + TD+ +A LKGL LT LNL VT
Sbjct: 203 ----------TYLGLKELKGLTNLTSLDLFGTSTTDASLAELKGLTNLTELNLSDTKVTD 252
Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 278
A L L+ L +L L+L +++D G +K + +L VL+L +TD L L L+ L
Sbjct: 253 AGLQELTGLANLASLDLRFTKVTDAGLQKLKGLSNLAVLDLFGTSVTDAGLKELGRLSKL 312
Query: 279 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
L+L S + GL LTGL NL L L T V +GL+ LSGL NL S++L T +SD
Sbjct: 313 TVLDLGSTKVTGTGLKELTGLANLTSLHLRLTAVTDAGLKELSGLANLTSLDLFGTPVSD 372
Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAAL 368
L++L LS L SL L +TD G+ L
Sbjct: 373 TDLKELKKLSKLTSLRLGRTAVTDVGIKEL 402
>gi|325110089|ref|YP_004271157.1| hypothetical protein Plabr_3538 [Planctomyces brasiliensis DSM
5305]
gi|324970357|gb|ADY61135.1| leucine-rich repeat-containing protein [Planctomyces brasiliensis
DSM 5305]
Length = 451
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 113/364 (31%), Positives = 179/364 (49%), Gaps = 26/364 (7%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
+QG+ + +VD + D L HL +Q L + F + G+ L+GL++L LS
Sbjct: 81 AQGN-VTAVDFRSVEAADDALTHLTGTPQVQEL-YLFGPGFTSAGMSDLQGLNDLRLLSL 138
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNC------ 167
+ I G+ + +LV L L + GL L GL KL L++++ N
Sbjct: 139 EKT-LIDDAGLVEIGRIPSLVALRLRQTDVSDEGLKALGGLDKLRELDLRFTNISDEGLP 197
Query: 168 -----------------ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
I+D +K L+ + ++ L ++ + +T++ + LK +L L
Sbjct: 198 ALAELDSISTVKLDRTKISDEGVKTLAAIPTIRGLGLNLTNLTNTALEALKERSELVTLE 257
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
++ + A + L + +L L+L R + D+G E K+ SLK L++ I+D
Sbjct: 258 MDDTQIDDAGIVHLEGMSNLQNLSLRRDDVGDEGFEIIGKLKSLKRLSIRDTVISDAGCA 317
Query: 271 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 330
HL L NLE+L+L+ IGDEG+ +L GL NLK LEL T++ G L LT L +N
Sbjct: 318 HLANLENLETLDLNETFIGDEGVAHLGGLKNLKTLELWFTRITPQGTAPLQNLTALRELN 377
Query: 331 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 390
L T I D +L LAGL+ L++LNL ITD GL L L L + L +++D G
Sbjct: 378 LEDTRIDDSALEPLAGLTELRTLNLKLTPITDEGLVHLHGLKNLEFVHLGNTQVSDEGTD 437
Query: 391 YLRS 394
L++
Sbjct: 438 ALKA 441
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 108/205 (52%), Gaps = 4/205 (1%)
Query: 55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
+ S L+++++ + + D+G++HL+ SNLQ+L + D G E + L +L LS
Sbjct: 249 ERSELVTLEMDDTQIDDAGIVHLEGMSNLQNLSLRRD-DVGDEGFEIIGKLKSLKRLSI- 306
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
R+ I+ G A L NL LDL G+ +L GL L++L + W IT
Sbjct: 307 RDTVISDAGCAHLANLENLETLDLNETFIGDEGVAHLGGLKNLKTLEL-WFTRITPQGTA 365
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
PL LT L+ L + +++ DS + L GL +L LNL+ P+T L L L +L +++
Sbjct: 366 PLQNLTALRELNLEDTRIDDSALEPLAGLTELRTLNLKLTPITDEGLVHLHGLKNLEFVH 425
Query: 235 LNRCQLSDDGCEKF-SKIGSLKVLN 258
L Q+SD+G + + + +KV N
Sbjct: 426 LGNTQVSDEGTDALKAAVPGVKVQN 450
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 85/176 (48%), Gaps = 13/176 (7%)
Query: 212 EGCPVT-AACLDSLSALGSLFYLN---------LNRCQLSDDGCEKFSKIGSLKVLNLGF 261
E P +A +++L A G++ N + +DD + ++ L L
Sbjct: 57 ESTPADDSAAVEALEAAGAILKTNAQGNVTAVDFRSVEAADDALTHLTGTPQVQELYLFG 116
Query: 262 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 321
T + L+GL +L L+L+ I D GLV + + +L L L T V GL+ L
Sbjct: 117 PGFTSAGMSDLQGLNDLRLLSLEKTLIDDAGLVEIGRIPSLVALRLRQTDVSDEGLKALG 176
Query: 322 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG---LAALTSLTGL 374
GL L ++L FT ISD L LA L S+ ++ LD +I+D G LAA+ ++ GL
Sbjct: 177 GLDKLRELDLRFTNISDEGLPALAELDSISTVKLDRTKISDEGVKTLAAIPTIRGL 232
>gi|46446626|ref|YP_007991.1| hypothetical protein pc0992 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400267|emb|CAF23716.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 583
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 129/363 (35%), Positives = 195/363 (53%), Gaps = 46/363 (12%)
Query: 47 KWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGL 105
++ +I + + ++D S + +TD+ L+ LK+C NL+ L C+ I+D GL HL
Sbjct: 216 EFEKIINHFSNEIEALDFSNNAHLTDAHLLALKNCENLKVLHLEACLAITDDGLAHL--- 272
Query: 106 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKW 164
A L+ L LDL C + GL +L L L+ L+++
Sbjct: 273 ----------------------APLVALQHLDLSDCENLTDVGLAHLTPLTALQHLDLRG 310
Query: 165 CNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
C TD+ + L+ LT L+ L +S CS TD+G+A+L L L L+L GC +T A L
Sbjct: 311 C-YFTDAGLAHLTPLTALQHLNLSFCSNATDAGLAHLTPLTALQHLDLRGCYLTDAGLAH 369
Query: 224 LSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESL 281
L+ L L +L+L C+ L+D G + +L+ LNL + +TD L HL LT L+ L
Sbjct: 370 LTPLTGLQHLDLIGCKDLTDAGLAHLRPLTALQHLNLNWCRNLTDAGLAHLTPLTALQHL 429
Query: 282 NLDSC-GIGDEGLVNLTGLCNLK------CLELSDTQVGSSGLRHLSGLTNLESINLS-F 333
+L C I D+GL +LT L L+ C +L+D +GL HL+ LT L+ +NL+ +
Sbjct: 430 DLSFCSNITDDGLAHLTLLTTLQHLNLSGCYKLTD-----AGLAHLTLLTGLQHLNLNWY 484
Query: 334 TGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAY 391
++D L L L+ L+ L L D + +TD GLA LT LT L HL+L G ++TD+G A+
Sbjct: 485 KNLTDAGLAHLTPLAGLQYLALTDCKNLTDAGLAHLTPLTALQHLNLSGCYKLTDAGLAH 544
Query: 392 LRS 394
L S
Sbjct: 545 LTS 547
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 101/258 (39%), Positives = 140/258 (54%), Gaps = 7/258 (2%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L +DL G TD+GL HL + LQ L+ +FC +D GL HL L+ L L R
Sbjct: 301 TALQHLDLRGCYFTDAGLAHLTPLTALQHLNLSFCSNATDAGLAHLTPLTALQHLDL-RG 359
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
+T G+ L L LDL C + GL +L+ L L+ LN+ WC +TD+ +
Sbjct: 360 CYLTDAGLAHLTPLTGLQHLDLIGCKDLTDAGLAHLRPLTALQHLNLNWCRNLTDAGLAH 419
Query: 176 LSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYL 233
L+ LT L+ L +S CS +TD G+A+L L L LNL GC +T A L L+ L L +L
Sbjct: 420 LTPLTALQHLDLSFCSNITDDGLAHLTLLTTLQHLNLSGCYKLTDAGLAHLTLLTGLQHL 479
Query: 234 NLNRCQ-LSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSC-GIGD 290
NLN + L+D G + + L+ L L +TD L HL LT L+ LNL C + D
Sbjct: 480 NLNWYKNLTDAGLAHLTPLAGLQYLALTDCKNLTDAGLAHLTPLTALQHLNLSGCYKLTD 539
Query: 291 EGLVNLTGLCNLKCLELS 308
GL +LT L L+ L+LS
Sbjct: 540 AGLAHLTSLTALQYLDLS 557
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 75/226 (33%), Positives = 113/226 (50%), Gaps = 29/226 (12%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L +DL G +TD+GL HL + LQ LD C ++D GL HLR L+ L L+
Sbjct: 350 TALQHLDLRGCYLTDAGLAHLTPLTGLQHLDLIGCKDLTDAGLAHLRPLTALQHLNLNWC 409
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRI--------------------------HGGLVN 150
+T G+ L L LDL C+ I GL +
Sbjct: 410 RNLTDAGLAHLTPLTALQHLDLSFCSNITDDGLAHLTLLTTLQHLNLSGCYKLTDAGLAH 469
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLL 209
L L L+ LN+ W +TD+ + L+ L L+ L ++ C +TD+G+A+L L L L
Sbjct: 470 LTLLTGLQHLNLNWYKNLTDAGLAHLTPLAGLQYLALTDCKNLTDAGLAHLTPLTALQHL 529
Query: 210 NLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGS 253
NL GC +T A L L++L +L YL+L+ C L+DDG ++F + +
Sbjct: 530 NLSGCYKLTDAGLAHLTSLTALQYLDLSYCMNLTDDGLDRFKTLAT 575
Score = 42.0 bits (97), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
++TD+GL HL + LQ L+ + C +++D GL HL L+ L L +T G+ F
Sbjct: 511 NLTDAGLAHLTPLTALQHLNLSGCYKLTDAGLAHLTSLTALQYLDLSYCMNLTDDGLDRF 570
Query: 128 AGLINLVKLDLER 140
L + L++ R
Sbjct: 571 KTLATSLNLEIIR 583
>gi|46446912|ref|YP_008277.1| hypothetical protein pc1278 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400553|emb|CAF24002.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 731
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 120/334 (35%), Positives = 183/334 (54%), Gaps = 10/334 (2%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TD+GL++L +LQ L+ CI+++D GL HL L L L+ N +T G+
Sbjct: 360 LTDTGLVYLAPLVSLQYLNLFDCIKLTDAGLAHLTPLVALRHLNLMGCNKLTNAGLMHLR 419
Query: 129 GLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
L+ L LDL C + GL +L L+ L+ L + C +T + + L L NL+ L +
Sbjct: 420 PLMALQHLDLSCCRNLTDAGLAHLAPLVALQHLCLSECTNLTGAGLAHLKPLVNLQHLNL 479
Query: 188 -SCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQ-LSDDG 244
SC K+TD+G+A+L L L L+L C +T A L L L +L +L+LN C+ +D G
Sbjct: 480 NSCYKLTDAGLAHLTPLMALQHLDLSCCRNLTDAGLAHLRPLVALQHLDLNCCKNFTDAG 539
Query: 245 CEKFSKIGSLKVLNLG-FNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNL 302
+ + +L+ LNL +TD L +L L L LNL C D GL +L L L
Sbjct: 540 LTHLTPLVALQHLNLSCCRNLTDAGLAYLMPLVALSHLNLAGCHNFTDAGLAHLAPLVAL 599
Query: 303 KCLELSD-TQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNL-DARQ 359
+ L L D ++ ++GL HL+ L L+ ++LS ++D L L L +L L+L + +
Sbjct: 600 QHLNLGDCYRLTNAGLEHLTPLVALQHLDLSECEKLTDAGLTHLVPLVALTHLDLSECDK 659
Query: 360 ITDTGLAALTSLTGLTHLDL-FGARITDSGAAYL 392
+TD GLA LT L L HL+L + ++TD+G A+L
Sbjct: 660 LTDAGLAHLTPLEALQHLNLNWCDKLTDAGLAHL 693
Score = 141 bits (355), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 116/337 (34%), Positives = 185/337 (54%), Gaps = 10/337 (2%)
Query: 66 GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMK 125
+ +TD+ L+ LK+C NL++L C +++D GL +L L +L L+ +T G+
Sbjct: 332 NASLTDAHLLALKNCKNLKALHLQECYKLTDTGLVYLAPLVSLQYLNLFDCIKLTDAGLA 391
Query: 126 AFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
L+ L L+L C ++ + GL++L+ LM L+ L++ C +TD+ + L+ L L+
Sbjct: 392 HLTPLVALRHLNLMGCNKLTNAGLMHLRPLMALQHLDLSCCRNLTDAGLAHLAPLVALQH 451
Query: 185 LQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQ-LS 241
L +S C+ +T +G+A+LK L L LNL C +T A L L+ L +L +L+L+ C+ L+
Sbjct: 452 LCLSECTNLTGAGLAHLKPLVNLQHLNLNSCYKLTDAGLAHLTPLMALQHLDLSCCRNLT 511
Query: 242 DDGCEKFSKIGSLKVLNLG-FNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGL 299
D G + +L+ L+L TD L HL L L+ LNL C + D GL L L
Sbjct: 512 DAGLAHLRPLVALQHLDLNCCKNFTDAGLTHLTPLVALQHLNLSCCRNLTDAGLAYLMPL 571
Query: 300 CNLKCLELSDTQ-VGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNL-D 356
L L L+ +GL HL+ L L+ +NL +++ L L L +L+ L+L +
Sbjct: 572 VALSHLNLAGCHNFTDAGLAHLAPLVALQHLNLGDCYRLTNAGLEHLTPLVALQHLDLSE 631
Query: 357 ARQITDTGLAALTSLTGLTHLDLFGA-RITDSGAAYL 392
++TD GL L L LTHLDL ++TD+G A+L
Sbjct: 632 CEKLTDAGLTHLVPLVALTHLDLSECDKLTDAGLAHL 668
Score = 134 bits (336), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 119/336 (35%), Positives = 178/336 (52%), Gaps = 35/336 (10%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+T++GL+HL+ LQ LD + C ++D GL HL A
Sbjct: 410 LTNAGLMHLRPLMALQHLDLSCCRNLTDAGLAHL-------------------------A 444
Query: 129 GLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
L+ L L L CT + G GL +LK L+ L+ LN+ C +TD+ + L+ L L+ L +
Sbjct: 445 PLVALQHLCLSECTNLTGAGLAHLKPLVNLQHLNLNSCYKLTDAGLAHLTPLMALQHLDL 504
Query: 188 SCSK-VTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQ-LSDDG 244
SC + +TD+G+A+L+ L L L+L C T A L L+ L +L +LNL+ C+ L+D G
Sbjct: 505 SCCRNLTDAGLAHLRPLVALQHLDLNCCKNFTDAGLTHLTPLVALQHLNLSCCRNLTDAG 564
Query: 245 CEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNL 302
+ +L LNL G + TD L HL L L+ LNL C + + GL +LT L L
Sbjct: 565 LAYLMPLVALSHLNLAGCHNFTDAGLAHLAPLVALQHLNLGDCYRLTNAGLEHLTPLVAL 624
Query: 303 KCLELSD-TQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLD-ARQ 359
+ L+LS+ ++ +GL HL L L ++LS ++D L L L +L+ LNL+ +
Sbjct: 625 QHLDLSECEKLTDAGLTHLVPLVALTHLDLSECDKLTDAGLAHLTPLEALQHLNLNWCDK 684
Query: 360 ITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLRS 394
+TD GLA LT L L L L + T+ G A+ +S
Sbjct: 685 LTDAGLAHLTPLLALQDLYLGYCKNFTEVGLAHFKS 720
Score = 130 bits (328), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 123/347 (35%), Positives = 188/347 (54%), Gaps = 15/347 (4%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSN-LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
SSLL+ S VT+ I LK SN ++ L+F+ ++D L L+ NL +L +
Sbjct: 301 SSLLN---QASHVTEFEKI-LKHFSNEIERLNFSKNASLTDAHLLALKNCKNLKALHLQE 356
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
+T G+ A L++L L+L C ++ GL +L L+ L LN+ CN +T++ +
Sbjct: 357 CYKLTDTGLVYLAPLVSLQYLNLFDCIKLTDAGLAHLTPLVALRHLNLMGCNKLTNAGLM 416
Query: 175 PLSGLTNLKSLQISCSK-VTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFY 232
L L L+ L +SC + +TD+G+A+L L L L L C +T A L L L +L +
Sbjct: 417 HLRPLMALQHLDLSCCRNLTDAGLAHLAPLVALQHLCLSECTNLTGAGLAHLKPLVNLQH 476
Query: 233 LNLNRC-QLSDDGCEKFSKIGSLKVLNLG-FNEITDECLVHLKGLTNLESLNLDSC-GIG 289
LNLN C +L+D G + + +L+ L+L +TD L HL+ L L+ L+L+ C
Sbjct: 477 LNLNSCYKLTDAGLAHLTPLMALQHLDLSCCRNLTDAGLAHLRPLVALQHLDLNCCKNFT 536
Query: 290 DEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLS-FTGISDGSLRKLAGL 347
D GL +LT L L+ L LS + + +GL +L L L +NL+ +D L LA L
Sbjct: 537 DAGLTHLTPLVALQHLNLSCCRNLTDAGLAYLMPLVALSHLNLAGCHNFTDAGLAHLAPL 596
Query: 348 SSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYL 392
+L+ LNL D ++T+ GL LT L L HLDL ++TD+G +L
Sbjct: 597 VALQHLNLGDCYRLTNAGLEHLTPLVALQHLDLSECEKLTDAGLTHL 643
Score = 111 bits (278), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 92/262 (35%), Positives = 139/262 (53%), Gaps = 10/262 (3%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
+++T +GL HLK NLQ L+ N C +++D GL HL L L L +T G+
Sbjct: 458 TNLTGAGLAHLKPLVNLQHLNLNSCYKLTDAGLAHLTPLMALQHLDLSCCRNLTDAGLAH 517
Query: 127 FAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
L+ L LDL C GL +L L+ L+ LN+ C +TD+ + L L L L
Sbjct: 518 LRPLVALQHLDLNCCKNFTDAGLTHLTPLVALQHLNLSCCRNLTDAGLAYLMPLVALSHL 577
Query: 186 QIS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQ-LSD 242
++ C TD+G+A+L L L LNL C +T A L+ L+ L +L +L+L+ C+ L+D
Sbjct: 578 NLAGCHNFTDAGLAHLAPLVALQHLNLGDCYRLTNAGLEHLTPLVALQHLDLSECEKLTD 637
Query: 243 DGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLC 300
G + +L L+L +++TD L HL L L+ LNL+ C + D GL +LT L
Sbjct: 638 AGLTHLVPLVALTHLDLSECDKLTDAGLAHLTPLEALQHLNLNWCDKLTDAGLAHLTPLL 697
Query: 301 NLKCLEL----SDTQVGSSGLR 318
L+ L L + T+VG + +
Sbjct: 698 ALQDLYLGYCKNFTEVGLAHFK 719
Score = 44.3 bits (103), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 58 SLLSVDLSGSD-VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+L +DLS D +TD+GL HL LQ L+ N+C +++D GL HL L L L
Sbjct: 648 ALTHLDLSECDKLTDAGLAHLTPLEALQHLNLNWCDKLTDAGLAHLTPLLALQDLYLGYC 707
Query: 117 NAITAQGMKAFAGLINLVKLDLER 140
T G+ F + + L + R
Sbjct: 708 KNFTEVGLAHFKSSVAPLHLKIIR 731
>gi|46447562|ref|YP_008927.1| hypothetical protein pc1928 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46401203|emb|CAF24652.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 528
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 118/339 (34%), Positives = 184/339 (54%), Gaps = 33/339 (9%)
Query: 65 SGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM 124
+ +TD+ LK+C NL++L F C ++D GL HL+ L+ L L+
Sbjct: 203 ENTHLTDAHFSVLKECKNLKALHFEACQILTDAGLAHLKPLTALQHLNL----------- 251
Query: 125 KAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
+G +L + GL +L L L+ L++ C TD + L+ LT L+
Sbjct: 252 ---SGCYHLTDV----------GLAHLTFLTGLQHLDLSQCWHFTDDGLAHLTSLTALQY 298
Query: 185 LQ-ISCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQ-LS 241
L + C + D+G+A+LK L L LNL GC +T A L L+ L L +LNL++C+ L+
Sbjct: 299 LALMGCKNLIDAGLAHLKPLTSLQHLNLRGCGYLTDAGLAHLAPLTGLQHLNLSKCENLT 358
Query: 242 DDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGL 299
D G + +L+ LNL ++TD+ L HL +TNL+ L+L C + D GL +LT L
Sbjct: 359 DVGLAHLRLLVALQYLNLDNCRKLTDDGLAHLTPVTNLQHLDLSQCWHLTDIGLAHLTPL 418
Query: 300 CNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNL-D 356
+L+ L+LS + + GL HL+ LT L+ ++LS+ ++D L L L++L+ L+L
Sbjct: 419 KSLQHLDLSRCENLTDDGLVHLTPLTALQHLDLSYCYNLTDDGLAHLTPLTTLQHLDLMG 478
Query: 357 ARQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRS 394
+ +TD GLA LT L L +LDL G + TD G A ++
Sbjct: 479 CKNLTDDGLAHLTPLIALQYLDLIGCKNFTDDGLARFKN 517
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 113/295 (38%), Positives = 159/295 (53%), Gaps = 10/295 (3%)
Query: 108 LTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCN 166
+ L+F N +T NL L E C + GL +LK L L+ LN+ C
Sbjct: 196 IKKLNFSENTHLTDAHFSVLKECKNLKALHFEACQILTDAGLAHLKPLTALQHLNLSGCY 255
Query: 167 CITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSL 224
+TD + L+ LT L+ L +S C TD G+A+L L L L L GC + A L L
Sbjct: 256 HLTDVGLAHLTFLTGLQHLDLSQCWHFTDDGLAHLTSLTALQYLALMGCKNLIDAGLAHL 315
Query: 225 SALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNE-ITDECLVHLKGLTNLESLN 282
L SL +LNL C L+D G + + L+ LNL E +TD L HL+ L L+ LN
Sbjct: 316 KPLTSLQHLNLRGCGYLTDAGLAHLAPLTGLQHLNLSKCENLTDVGLAHLRLLVALQYLN 375
Query: 283 LDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSF-TGISDG 339
LD+C + D+GL +LT + NL+ L+LS + GL HL+ L +L+ ++LS ++D
Sbjct: 376 LDNCRKLTDDGLAHLTPVTNLQHLDLSQCWHLTDIGLAHLTPLKSLQHLDLSRCENLTDD 435
Query: 340 SLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYL 392
L L L++L+ L+L +TD GLA LT LT L HLDL G + +TD G A+L
Sbjct: 436 GLVHLTPLTALQHLDLSYCYNLTDDGLAHLTPLTTLQHLDLMGCKNLTDDGLAHL 490
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 90/271 (33%), Positives = 141/271 (52%), Gaps = 33/271 (12%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
TD GL HL + LQ L C + D GL HL+ L++L L+ R +T G+ A
Sbjct: 282 FTDDGLAHLTSLTALQYLALMGCKNLIDAGLAHLKPLTSLQHLNLRGCGYLTDAGLAHLA 341
Query: 129 GLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
L L L+L +C + GL +L+ L+ L+ LN+ C +TD + L+ +TNL+ L +
Sbjct: 342 PLTGLQHLNLSKCENLTDVGLAHLRLLVALQYLNLDNCRKLTDDGLAHLTPVTNLQHLDL 401
Query: 188 S-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGC 245
S C +TD G+A+ L+ L SL +L+L+RC+ L+DDG
Sbjct: 402 SQCWHLTDIGLAH------------------------LTPLKSLQHLDLSRCENLTDDGL 437
Query: 246 EKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLK 303
+ + +L+ L+L + +TD+ L HL LT L+ L+L C + D+GL +LT L L+
Sbjct: 438 VHLTPLTALQHLDLSYCYNLTDDGLAHLTPLTTLQHLDLMGCKNLTDDGLAHLTPLIALQ 497
Query: 304 CLEL----SDTQVGSSGLRHLSGLTNLESIN 330
L+L + T G + ++L+ NL IN
Sbjct: 498 YLDLIGCKNFTDDGLARFKNLAASLNLTIIN 528
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 71/202 (35%), Positives = 109/202 (53%), Gaps = 5/202 (2%)
Query: 57 SSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
+SL ++L G +TD+GL HL + LQ L+ + C ++D GL HLR L L L+
Sbjct: 319 TSLQHLNLRGCGYLTDAGLAHLAPLTGLQHLNLSKCENLTDVGLAHLRLLVALQYLNLDN 378
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMK 174
+T G+ + NL LDL +C + GL +L L L+ L++ C +TD +
Sbjct: 379 CRKLTDDGLAHLTPVTNLQHLDLSQCWHLTDIGLAHLTPLKSLQHLDLSRCENLTDDGLV 438
Query: 175 PLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFY 232
L+ LT L+ L +S C +TD G+A+L L L L+L GC +T L L+ L +L Y
Sbjct: 439 HLTPLTALQHLDLSYCYNLTDDGLAHLTPLTTLQHLDLMGCKNLTDDGLAHLTPLIALQY 498
Query: 233 LNLNRCQ-LSDDGCEKFSKIGS 253
L+L C+ +DDG +F + +
Sbjct: 499 LDLIGCKNFTDDGLARFKNLAA 520
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 78/238 (32%), Positives = 122/238 (51%), Gaps = 31/238 (13%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
++ D+GL HLK ++LQ L+ C ++D GL HL
Sbjct: 306 NLIDAGLAHLKPLTSLQHLNLRGCGYLTDAGLAHL------------------------- 340
Query: 128 AGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
A L L L+L +C + GL +L+ L+ L+ LN+ C +TD + L+ +TNL+ L
Sbjct: 341 APLTGLQHLNLSKCENLTDVGLAHLRLLVALQYLNLDNCRKLTDDGLAHLTPVTNLQHLD 400
Query: 187 IS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDD 243
+S C +TD G+A+L L+ L L+L C +T L L+ L +L +L+L+ C L+DD
Sbjct: 401 LSQCWHLTDIGLAHLTPLKSLQHLDLSRCENLTDDGLVHLTPLTALQHLDLSYCYNLTDD 460
Query: 244 GCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGL 299
G + + +L+ L+L G +TD+ L HL L L+ L+L C D+GL L
Sbjct: 461 GLAHLTPLTTLQHLDLMGCKNLTDDGLAHLTPLIALQYLDLIGCKNFTDDGLARFKNL 518
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 54/111 (48%), Gaps = 4/111 (3%)
Query: 58 SLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
SL +DLS ++TD GL+HL + LQ LD ++C ++D GL HL L+ L L
Sbjct: 420 SLQHLDLSRCENLTDDGLVHLTPLTALQHLDLSYCYNLTDDGLAHLTPLTTLQHLDLMGC 479
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCN 166
+T G+ LI L LDL C GL K L SLN+ N
Sbjct: 480 KNLTDDGLAHLTPLIALQYLDLIGCKNFTDDGLARFKNLAA--SLNLTIIN 528
>gi|87311782|ref|ZP_01093896.1| hypothetical protein DSM3645_04405 [Blastopirellula marina DSM
3645]
gi|87285456|gb|EAQ77376.1| hypothetical protein DSM3645_04405 [Blastopirellula marina DSM
3645]
Length = 427
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 105/331 (31%), Positives = 166/331 (50%), Gaps = 30/331 (9%)
Query: 66 GSDVTDSGLIHLKDCSNLQSLDFNFC-IQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM 124
G+DVTD + +L +L+ DF+ ISD G+E L L +L+ L RR N I+ + +
Sbjct: 92 GADVTDKTIDNLLQMKDLR--DFSAANTTISDAGIEKLSALKDLSVLQLRRTN-ISNKSL 148
Query: 125 KAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
++ L L LDL + ITD+ M+ ++ + N++
Sbjct: 149 ESMLQLPKLRYLDLR-------------------------YDDITDAGMEIVAKMPNMEV 183
Query: 185 LQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 244
L++ + V D G+A+L GL KL LN+ G VT A S++ L +L L N L+ +G
Sbjct: 184 LRLEGAIVGDEGLAHLTGLSKLKFLNVRGTNVTDAGFKSIANLTNLETLETNGTALTTEG 243
Query: 245 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 304
E + + +K L L ++ D+ VHLK + L++L L + G+ NL G+ LK
Sbjct: 244 MEYLAPLTKVKTLELMRAQVKDDGFVHLKEMKQLQNLMLRQTRVAGAGMENLIGIDTLKS 303
Query: 305 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 364
L++S+T G GL H+ NLE +NL FT ++ L + L+++K+L LD + ITD
Sbjct: 304 LDVSETPFGDDGLIHVGKFKNLEKLNLWFTKVTPDGLPHIKDLTNMKTLILDYQGITDDS 363
Query: 365 LAALTSLTGLTHLDLF-GARITDSGAAYLRS 394
L L + L L L IT+ YL+
Sbjct: 364 LENLVGMQKLQTLSLKDNDMITNESIKYLKQ 394
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 73/258 (28%), Positives = 130/258 (50%), Gaps = 5/258 (1%)
Query: 40 QYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGL 99
+Y + D M+++A ++ + L G+ V D GL HL S L+ L+ ++D G
Sbjct: 163 RYDDITDAGMEIVAKM-PNMEVLRLEGAIVGDEGLAHLTGLSKLKFLNVR-GTNVTDAGF 220
Query: 100 EHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 159
+ + L+NL +L A+T +GM+ A L + L+L R G V+LK + +L++
Sbjct: 221 KSIANLTNLETLE-TNGTALTTEGMEYLAPLTKVKTLELMRAQVKDDGFVHLKEMKQLQN 279
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
L ++ + + M+ L G+ LKSL +S + D G+ ++ + L LNL VT
Sbjct: 280 LMLRQTR-VAGAGMENLIGIDTLKSLDVSETPFGDDGLIHVGKFKNLEKLNLWFTKVTPD 338
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE-ITDECLVHLKGLTNL 278
L + L ++ L L+ ++DD E + L+ L+L N+ IT+E + +LK L L
Sbjct: 339 GLPHIKDLTNMKTLILDYQGITDDSLENLVGMQKLQTLSLKDNDMITNESIKYLKQLKGL 398
Query: 279 ESLNLDSCGIGDEGLVNL 296
+ +++ I G+ L
Sbjct: 399 KKISITFTQIDSRGVAEL 416
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 85/161 (52%)
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
G + +++ SD+ E SK+ +K+L + ++TD+ + +L + +L + +
Sbjct: 59 GVVTVADMSVASFSDEQLEPLSKLKHVKILKVYGADVTDKTIDNLLQMKDLRDFSAANTT 118
Query: 288 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 347
I D G+ L+ L +L L+L T + + L + L L ++L + I+D + +A +
Sbjct: 119 ISDAGIEKLSALKDLSVLQLRRTNISNKSLESMLQLPKLRYLDLRYDDITDAGMEIVAKM 178
Query: 348 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 388
+++ L L+ + D GLA LT L+ L L++ G +TD+G
Sbjct: 179 PNMEVLRLEGAIVGDEGLAHLTGLSKLKFLNVRGTNVTDAG 219
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 71/141 (50%)
Query: 252 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 311
G + V ++ +DE L L L +++ L + + D+ + NL + +L+ ++T
Sbjct: 59 GVVTVADMSVASFSDEQLEPLSKLKHVKILKVYGADVTDKTIDNLLQMKDLRDFSAANTT 118
Query: 312 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 371
+ +G+ LS L +L + L T IS+ SL + L L+ L+L ITD G+ + +
Sbjct: 119 ISDAGIEKLSALKDLSVLQLRRTNISNKSLESMLQLPKLRYLDLRYDDITDAGMEIVAKM 178
Query: 372 TGLTHLDLFGARITDSGAAYL 392
+ L L GA + D G A+L
Sbjct: 179 PNMEVLRLEGAIVGDEGLAHL 199
>gi|46447552|ref|YP_008917.1| hypothetical protein pc1918 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46401193|emb|CAF24642.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 552
Score = 141 bits (356), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 120/339 (35%), Positives = 176/339 (51%), Gaps = 10/339 (2%)
Query: 65 SGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM 124
+ + +TD+ L+ LK+C NL+ L C I+D GL HL L+ L L+ +T G+
Sbjct: 202 NNAHLTDAHLLTLKNCENLKVLHLEACQAITDDGLAHLAPLTALQHLNLNGCYKLTDAGL 261
Query: 125 KAFAGLINLVKLDLERCTRIH-GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
L L LDL C + GLV+LK L L++L + C +TD + L LT L+
Sbjct: 262 VHLKSLTALQTLDLSYCKNLKDAGLVHLKPLTALQNLALTSCKNLTDRGLSHLKSLTALQ 321
Query: 184 SLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QL 240
+L +S C D+G+A+L L L L+L C +T L L +L +L LNL+ C +L
Sbjct: 322 TLDLSYCKNFKDAGLAHLPPLTALQTLDLSYCKDLTDRGLSHLKSLTALQTLNLSYCKKL 381
Query: 241 SDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTG 298
D G + +L+ L L +TD L HLK L L+ L L C + D GL +L
Sbjct: 382 KDAGLAHLKPLTALQYLALNSCKNLTDRGLSHLKSLMALQHLVLSGCDNLTDAGLAHLKP 441
Query: 299 LCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLD 356
L L+ L L Q + GL HL+ LT L++++LS+ + D L L L++L++L L
Sbjct: 442 LTALQTLGLRRCQNLTGDGLAHLAPLTALQTLDLSYCKKLKDAGLAHLKPLTALQTLGLK 501
Query: 357 -ARQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLR 393
+TD GLA L L L HLDL + +T +G A +
Sbjct: 502 WCSNLTDAGLAHLKPLAALQHLDLSYCNNLTRAGLANFK 540
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 117/357 (32%), Positives = 189/357 (52%), Gaps = 35/357 (9%)
Query: 20 LTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHL 77
LT+ L ++C L+ L L + D + +A ++L ++L+G +TD+GL+HL
Sbjct: 206 LTDAHLLTLKNCENLKVLHLEACQAITDDGLAHLAPL-TALQHLNLNGCYKLTDAGLVHL 264
Query: 78 KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLD 137
K + LQ+LD ++C + D GL HL+ L+ L +L+ +T +G+ L L LD
Sbjct: 265 KSLTALQTLDLSYCKNLKDAGLVHLKPLTALQNLALTSCKNLTDRGLSHLKSLTALQTLD 324
Query: 138 LERCTRIH-GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDS 195
L C GL +L L L++L++ +C +TD + L LT L++L +S C K+ D+
Sbjct: 325 LSYCKNFKDAGLAHLPPLTALQTLDLSYCKDLTDRGLSHLKSLTALQTLNLSYCKKLKDA 384
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSL 254
G+A+LK P+TA L YL LN C+ L+D G + +L
Sbjct: 385 GLAHLK-------------PLTA-----------LQYLALNSCKNLTDRGLSHLKSLMAL 420
Query: 255 KVLNL-GFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQ 311
+ L L G + +TD L HLK LT L++L L C + +GL +L L L+ L+LS +
Sbjct: 421 QHLVLSGCDNLTDAGLAHLKPLTALQTLGLRRCQNLTGDGLAHLAPLTALQTLDLSYCKK 480
Query: 312 VGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLA 366
+ +GL HL LT L+++ L + + ++D L L L++L+ L+L +T GLA
Sbjct: 481 LKDAGLAHLKPLTALQTLGLKWCSNLTDAGLAHLKPLAALQHLDLSYCNNLTRAGLA 537
Score = 131 bits (330), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 116/327 (35%), Positives = 179/327 (54%), Gaps = 20/327 (6%)
Query: 83 LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT 142
+++L+F+ ++D L L+ NL L AIT G+ A L L L+L C
Sbjct: 195 IEALNFSNNAHLTDAHLLTLKNCENLKVLHLEACQAITDDGLAHLAPLTALQHLNLNGCY 254
Query: 143 RI-HGGLVNLKGLMKLESLNIKWCNCITDS---DMKPLSGLTNLKSLQISCSKVTDSGIA 198
++ GLV+LK L L++L++ +C + D+ +KPL+ L NL SC +TD G++
Sbjct: 255 KLTDAGLVHLKSLTALQTLDLSYCKNLKDAGLVHLKPLTALQNLA--LTSCKNLTDRGLS 312
Query: 199 YLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKV 256
+LK L L L+L C A L L L +L L+L+ C+ L+D G + +L+
Sbjct: 313 HLKSLTALQTLDLSYCKNFKDAGLAHLPPLTALQTLDLSYCKDLTDRGLSHLKSLTALQT 372
Query: 257 LNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVG 313
LNL + ++ D L HLK LT L+ L L+SC + D GL +L L L+ L LS +
Sbjct: 373 LNLSYCKKLKDAGLAHLKPLTALQYLALNSCKNLTDRGLSHLKSLMALQHLVLSGCDNLT 432
Query: 314 SSGLRHLSGLTNLESINL----SFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAAL 368
+GL HL LT L+++ L + TG DG L LA L++L++L+L +++ D GLA L
Sbjct: 433 DAGLAHLKPLTALQTLGLRRCQNLTG--DG-LAHLAPLTALQTLDLSYCKKLKDAGLAHL 489
Query: 369 TSLTGLTHLDL-FGARITDSGAAYLRS 394
LT L L L + + +TD+G A+L+
Sbjct: 490 KPLTALQTLGLKWCSNLTDAGLAHLKP 516
Score = 46.2 bits (108), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 57 SSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
++L ++DLS + D+GL HLK + LQ+L +C ++D GL HL+ L+ L L
Sbjct: 468 TALQTLDLSYCKKLKDAGLAHLKPLTALQTLGLKWCSNLTDAGLAHLKPLAALQHLDLSY 527
Query: 116 NNAITAQGMKAFAGLINLVKLDLER 140
N +T G+ F L + L++ R
Sbjct: 528 CNNLTRAGLANFKILGASLNLEIVR 552
>gi|46446776|ref|YP_008141.1| hypothetical protein pc1142 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400417|emb|CAF23866.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 590
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 123/341 (36%), Positives = 186/341 (54%), Gaps = 10/341 (2%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
L + +T++ L+ LKDC N++ L F C ++D GL HL L+ L L +T G
Sbjct: 233 LENTHLTNAHLLALKDCKNVKVLYFKKCRDVTDAGLAHLTPLTALQHLGLSDCENLTDAG 292
Query: 124 MKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNL 182
+ L L LDL C + GLV+L L+ L+ L + C +T + + L+ LT L
Sbjct: 293 LAHLTTLTALQHLDLSGCWNLTDSGLVHLTPLVGLQHLGLSDCENLTVAGLAHLTSLTAL 352
Query: 183 KSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-Q 239
+ L + +C +TD+G+A+L L L L+L C +T A L L+ L +L +LNL C +
Sbjct: 353 QHLDLRNCYNLTDAGLAHLTPLTALQHLDLSCCYNLTDAGLAHLTPLTALQHLNLCCCRK 412
Query: 240 LSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT 297
L+D G + + +L+ L+L + +TD L HL LT L LNL C + GL +LT
Sbjct: 413 LTDAGLAHLTPLTALQHLDLSYCYNLTDAGLAHLTPLTALLHLNLSECWKLTGAGLAHLT 472
Query: 298 GLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNL 355
L L+ L LS + +GL HL+ LT L+ +NLS+ +D L L L++L+SL+L
Sbjct: 473 PLVALQHLNLSKCNNLTDAGLVHLAPLTALQHLNLSWCKKFTDAGLAHLTLLTALQSLDL 532
Query: 356 -DARQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRS 394
+TD GL LT LT L +LDL G + +TD+G ++
Sbjct: 533 IGCNNLTDAGLVHLTPLTALQYLDLIGCKNLTDAGLERFKT 573
Score = 121 bits (303), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 105/297 (35%), Positives = 159/297 (53%), Gaps = 8/297 (2%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
++TD+GL HL + LQ LD + C ++D GL HL L L L +T G+
Sbjct: 286 ENLTDAGLAHLTTLTALQHLDLSGCWNLTDSGLVHLTPLVGLQHLGLSDCENLTVAGLAH 345
Query: 127 FAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
L L LDL C + GL +L L L+ L++ C +TD+ + L+ LT L+ L
Sbjct: 346 LTSLTALQHLDLRNCYNLTDAGLAHLTPLTALQHLDLSCCYNLTDAGLAHLTPLTALQHL 405
Query: 186 QI-SCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSD 242
+ C K+TD+G+A+L L L L+L C +T A L L+ L +L +LNL+ C +L+
Sbjct: 406 NLCCCRKLTDAGLAHLTPLTALQHLDLSYCYNLTDAGLAHLTPLTALLHLNLSECWKLTG 465
Query: 243 DGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLC 300
G + + +L+ LNL N +TD LVHL LT L+ LNL C D GL +LT L
Sbjct: 466 AGLAHLTPLVALQHLNLSKCNNLTDAGLVHLAPLTALQHLNLSWCKKFTDAGLAHLTLLT 525
Query: 301 NLKCLELSD-TQVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNL 355
L+ L+L + +GL HL+ LT L+ ++L ++D L + L++L +L +
Sbjct: 526 ALQSLDLIGCNNLTDAGLVHLTPLTALQYLDLIGCKNLTDAGLERFKTLAALPNLTI 582
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
+++TD+GL+HL + LQ L+ ++C + +D GL HL L+ L SL N +T G+
Sbjct: 486 NNLTDAGLVHLAPLTALQHLNLSWCKKFTDAGLAHLTLLTALQSLDLIGCNNLTDAGLVH 545
Query: 127 FAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIK 163
L L LDL C + GL K L L +L IK
Sbjct: 546 LTPLTALQYLDLIGCKNLTDAGLERFKTLAALPNLTIK 583
>gi|168701031|ref|ZP_02733308.1| leucine-rich repeat domain protein [Gemmata obscuriglobus UQM 2246]
Length = 389
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 106/335 (31%), Positives = 175/335 (52%), Gaps = 6/335 (1%)
Query: 62 VDLSGSDV-TDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
VDLSG+ TD+GL L + L +L+ Q++D L+ + LT L+ IT
Sbjct: 46 VDLSGAKTFTDAGLKELSLFAGLTNLNLT-NTQVTDAALKDVARFPKLTVLNVSYTQ-IT 103
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGL 179
+G++ AGL L L L+ T++ G GL +L L KL +L++ +TD+ ++ L G+
Sbjct: 104 DEGLREIAGLTELTDLVLD-YTKVSGSGLKHLAALTKLRTLSL-GSKIVTDAGLRGLVGV 161
Query: 180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 239
L+ L + + VTD+G+ + L +L L L PVT L L+ L L +L L+ +
Sbjct: 162 RGLRQLDLRETSVTDAGLKEIAPLSELKTLMLVNAPVTGPGLKDLALLTKLQFLFLSGTR 221
Query: 240 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 299
++ DG + + + SL++L LG +TD L L G L L L + + GL L L
Sbjct: 222 ITGDGLSELTGLKSLRLLELGGTPLTDAGLKQLAGFDTLGHLGLSNTKVTGAGLKELAAL 281
Query: 300 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 359
L L+L T++ + L+ ++ LTNL + + T ++D +R LA L+ L+ LNL +
Sbjct: 282 KQLSGLDLGSTKITDADLKEIAALTNLTGLTMRDTPVTDAGVRNLAPLTKLRRLNLTHTK 341
Query: 360 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRS 394
+T+ L + LT +DL +T+ G L++
Sbjct: 342 VTNACAKTLATFKHLTSVDLHQTDVTEEGGKELKA 376
>gi|46446665|ref|YP_008030.1| hypothetical protein pc1031 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400306|emb|CAF23755.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 553
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 125/336 (37%), Positives = 181/336 (53%), Gaps = 10/336 (2%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TD+ L+ LKDC NL+ L C ++D GL HL L+ L L +T G+
Sbjct: 207 LTDAHLLALKDCENLKVLHCKKCWGVTDAGLAHLTPLTALQRLDLSYCENLTDDGLAHLT 266
Query: 129 GLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
L L LDL C + GL +L L L+ L + C +TD+ + L+ LT L+ L +
Sbjct: 267 PLTALQHLDLSYCENLTDDGLAHLAPLKALQRLALTNCKNLTDAGLTHLTTLTALQHLDL 326
Query: 188 S-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQ-LSDDG 244
S K+TD+G+A+LK L L L+L C +T A + L L +L +L+L++ + L+D G
Sbjct: 327 SQYWKLTDAGLAHLKPLTALQHLDLSLCYYLTDAGIAHLKPLTALQHLDLSQYRNLTDAG 386
Query: 245 CEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNL 302
+ + L+ LNL +TD L HL LT L+ LNL SC + D GLV+L L L
Sbjct: 387 LAHLTPLMGLQYLNLSACKNLTDAGLAHLAPLTALQHLNLSSCYNLTDAGLVHLIPLTAL 446
Query: 303 KCLELSDTQ-VGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQ 359
+ L LSD + + +GL HL+ LT L+ +NLS ++D L L L +L L+L +
Sbjct: 447 QHLYLSDWENLTDTGLAHLAPLTALQHLNLSNCRKLTDDGLAHLKSLVTLTHLDLSWCKN 506
Query: 360 ITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLRS 394
TD GL LT LTGL +L L +TD G A ++
Sbjct: 507 FTDEGLTHLTPLTGLQYLVLSLCYHLTDDGLARFKT 542
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 117/339 (34%), Positives = 179/339 (52%), Gaps = 11/339 (3%)
Query: 20 LTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHL 77
LT+ L A +DC L+ L + GV D + + + ++L +DLS ++TD GL HL
Sbjct: 207 LTDAHLLALKDCENLKVLHCKKCWGVTDAGLAHL-TPLTALQRLDLSYCENLTDDGLAHL 265
Query: 78 KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLD 137
+ LQ LD ++C ++D GL HL L L L+ +T G+ L L LD
Sbjct: 266 TPLTALQHLDLSYCENLTDDGLAHLAPLKALQRLALTNCKNLTDAGLTHLTTLTALQHLD 325
Query: 138 LERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK-VTDS 195
L + ++ GL +LK L L+ L++ C +TD+ + L LT L+ L +S + +TD+
Sbjct: 326 LSQYWKLTDAGLAHLKPLTALQHLDLSLCYYLTDAGIAHLKPLTALQHLDLSQYRNLTDA 385
Query: 196 GIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGS 253
G+A+L L L LNL C +T A L L+ L +L +LNL+ C L+D G + +
Sbjct: 386 GLAHLTPLMGLQYLNLSACKNLTDAGLAHLAPLTALQHLNLSSCYNLTDAGLVHLIPLTA 445
Query: 254 LKVLNLG-FNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQ 311
L+ L L + +TD L HL LT L+ LNL +C + D+GL +L L L L+LS +
Sbjct: 446 LQHLYLSDWENLTDTGLAHLAPLTALQHLNLSNCRKLTDDGLAHLKSLVTLTHLDLSWCK 505
Query: 312 -VGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLS 348
GL HL+ LT L+ + LS ++D L + L+
Sbjct: 506 NFTDEGLTHLTPLTGLQYLVLSLCYHLTDDGLARFKTLA 544
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 98/300 (32%), Positives = 145/300 (48%), Gaps = 59/300 (19%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLE 212
L K+E+LN +TD+ + L NLK L C VTD+G+A+L L L L+L
Sbjct: 193 LKKIETLNFSDNAYLTDAHLLALKDCENLKVLHCKKCWGVTDAGLAHLTPLTALQRLDLS 252
Query: 213 GCP-VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNL----------- 259
C +T L L+ L +L +L+L+ C+ L+DDG + + +L+ L L
Sbjct: 253 YCENLTDDGLAHLTPLTALQHLDLSYCENLTDDGLAHLAPLKALQRLALTNCKNLTDAGL 312
Query: 260 ---------------GFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLK 303
+ ++TD L HLK LT L+ L+L C + D G+ +L L L+
Sbjct: 313 THLTTLTALQHLDLSQYWKLTDAGLAHLKPLTALQHLDLSLCYYLTDAGIAHLKPLTALQ 372
Query: 304 CLELSDTQ-VGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNL------ 355
L+LS + + +GL HL+ L L+ +NLS ++D L LA L++L+ LNL
Sbjct: 373 HLDLSQYRNLTDAGLAHLTPLMGLQYLNLSACKNLTDAGLAHLAPLTALQHLNLSSCYNL 432
Query: 356 --------------------DARQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRS 394
D +TDTGLA L LT L HL+L R +TD G A+L+S
Sbjct: 433 TDAGLVHLIPLTALQHLYLSDWENLTDTGLAHLAPLTALQHLNLSNCRKLTDDGLAHLKS 492
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 79/245 (32%), Positives = 117/245 (47%), Gaps = 30/245 (12%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TD+GL HLK + LQ LD + C ++D G+ HL+ L+ L L + +T G+
Sbjct: 332 LTDAGLAHLKPLTALQHLDLSLCYYLTDAGIAHLKPLTALQHLDLSQYRNLTDAGLAHLT 391
Query: 129 GLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
L+ L L+L C + GL +L L L+ LN+ C +TD+ + L LT L+ L +
Sbjct: 392 PLMGLQYLNLSACKNLTDAGLAHLAPLTALQHLNLSSCYNLTDAGLVHLIPLTALQHLYL 451
Query: 188 S-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE 246
S +TD+G+A+L L L LNL C +L+DDG
Sbjct: 452 SDWENLTDTGLAHLAPLTALQHLNLSNCR-----------------------KLTDDGLA 488
Query: 247 KFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLC---N 301
+ +L L+L + TDE L HL LT L+ L L C + D+GL L N
Sbjct: 489 HLKSLVTLTHLDLSWCKNFTDEGLTHLTPLTGLQYLVLSLCYHLTDDGLARFKTLAVSHN 548
Query: 302 LKCLE 306
LK ++
Sbjct: 549 LKIIK 553
>gi|46445833|ref|YP_007198.1| F-box protein [Candidatus Protochlamydia amoebophila UWE25]
gi|46399474|emb|CAF22923.1| putative F-box protein [Candidatus Protochlamydia amoebophila
UWE25]
Length = 337
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 119/331 (35%), Positives = 185/331 (55%), Gaps = 9/331 (2%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
+L ++L +TD+GL HLK LQ L+ ++C ++D GL HL L+ L L+
Sbjct: 6 ALQHLELGCCKLTDAGLAHLKSLVALQHLNLSWCDNLTDTGLAHLTPLTALQHLNLSVCG 65
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+T G+ L+ L LDL +C ++ GL +L L+ L+ L ++ C +TD + L
Sbjct: 66 KLTGAGLAHLTPLVALENLDLSQCGKLTDAGLAHLTPLVALQHLGMRGCRKLTDVGLAHL 125
Query: 177 SGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLN 234
L L+ L + CS +TD+G+A+L+ L L LNL+ C +T L L L +L +L+
Sbjct: 126 RPLVALQHLDLDGCSNLTDAGLAHLRPLVALQHLNLKRCDNLTDIGLAHLRPLVALQHLD 185
Query: 235 LNRC-QLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCG-IGDE 291
L+ C L+D G + + +L+ LNL G + TD L HL L L+ LNL C + D
Sbjct: 186 LDGCNNLTDAGLAHLTPLVALQHLNLRGCFKFTDAGLAHLTPLVALQYLNLSDCSNLTDA 245
Query: 292 GLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSFTG-ISDGSLRKLAGLSS 349
GL +L L L+ L LS +++ +GL HL+ L LE ++LS G ++D L LA L++
Sbjct: 246 GLAHLKSLVALQHLNLSWCSKLTGAGLAHLTPLVALEDLDLSQCGKLTDAGLAHLALLTA 305
Query: 350 LKSLNLD-ARQITDTGLAALTSLTGLTHLDL 379
L+ LNL+ R++TD GLA +L +L+L
Sbjct: 306 LQYLNLERCRKLTDAGLAHFKTLAASIYLNL 336
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 101/272 (37%), Positives = 154/272 (56%), Gaps = 9/272 (3%)
Query: 130 LINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS- 188
L+ L L+L C GL +LK L+ L+ LN+ WC+ +TD+ + L+ LT L+ L +S
Sbjct: 4 LVALQHLELGCCKLTDAGLAHLKSLVALQHLNLSWCDNLTDTGLAHLTPLTALQHLNLSV 63
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCE 246
C K+T +G+A+L L L L+L C +T A L L+ L +L +L + C +L+D G
Sbjct: 64 CGKLTGAGLAHLTPLVALENLDLSQCGKLTDAGLAHLTPLVALQHLGMRGCRKLTDVGLA 123
Query: 247 KFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKC 304
+ +L+ L+L G + +TD L HL+ L L+ LNL C + D GL +L L L+
Sbjct: 124 HLRPLVALQHLDLDGCSNLTDAGLAHLRPLVALQHLNLKRCDNLTDIGLAHLRPLVALQH 183
Query: 305 LELSD-TQVGSSGLRHLSGLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNL-DARQIT 361
L+L + +GL HL+ L L+ +NL +D L L L +L+ LNL D +T
Sbjct: 184 LDLDGCNNLTDAGLAHLTPLVALQHLNLRGCFKFTDAGLAHLTPLVALQYLNLSDCSNLT 243
Query: 362 DTGLAALTSLTGLTHLDL-FGARITDSGAAYL 392
D GLA L SL L HL+L + +++T +G A+L
Sbjct: 244 DAGLAHLKSLVALQHLNLSWCSKLTGAGLAHL 275
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 104/227 (45%), Gaps = 36/227 (15%)
Query: 18 RCLTEVSLEAFRD-CALQDLCLGQYPGVNDKWM----DVIASQGSSLLSVDLSGSDVTDS 72
R LT+V L R ALQ L L + D + ++A Q +L D ++TD
Sbjct: 115 RKLTDVGLAHLRPLVALQHLDLDGCSNLTDAGLAHLRPLVALQHLNLKRCD----NLTDI 170
Query: 73 GLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLIN 132
GL HL+ LQ LD + C ++D GL HL L L L+ R T G+ L+
Sbjct: 171 GLAHLRPLVALQHLDLDGCNNLTDAGLAHLTPLVALQHLNLRGCFKFTDAGLAHLTPLVA 230
Query: 133 LVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS--- 188
L L+L C+ + GL +LK L+ L+ LN+ WC+ +T + + L+ L L+ L +S
Sbjct: 231 LQYLNLSDCSNLTDAGLAHLKSLVALQHLNLSWCSKLTGAGLAHLTPLVALEDLDLSQCG 290
Query: 189 -----------------------CSKVTDSGIAYLKGLQKLTLLNLE 212
C K+TD+G+A+ K L LNL+
Sbjct: 291 KLTDAGLAHLALLTALQYLNLERCRKLTDAGLAHFKTLAASIYLNLQ 337
>gi|46447141|ref|YP_008506.1| hypothetical protein pc1507 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400782|emb|CAF24231.1| hypothetical protein pc1507 [Candidatus Protochlamydia amoebophila
UWE25]
Length = 623
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 118/349 (33%), Positives = 176/349 (50%), Gaps = 36/349 (10%)
Query: 66 GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMK 125
+ +TD+ L+ LK C NL+ L C ++D GL HL L L L +T G+
Sbjct: 275 NAHLTDAHLLALKTCKNLKVLYLKKCCNLTDAGLSHLSPLVALQHLELSDCPRLTDAGLA 334
Query: 126 AFAGLINLVKLDLERCTRI--------------------------HGGLVNLKGLMKLES 159
L+ L L+L C+ H GL +L L+ L+
Sbjct: 335 HLTSLVALQYLNLSECSNFTDAGLAHLTPLLTLTHLNLSWCYNFTHAGLAHLTPLVALQH 394
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VT 217
LN+ C ITD+ + LS L L+ L + CS +TD+G+A+L L L L+L C +T
Sbjct: 395 LNLGHCRNITDAGLAHLSPLVALQHLNLGWCSNLTDAGLAHLSPLVALQHLDLGWCSNLT 454
Query: 218 AACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFN--EITDECLVHLKG 274
A L L++L +L +L+L+ C L+D G S + +L+ L+L N + D L HL
Sbjct: 455 DAGLAHLTSLVALQHLDLSWCYYLTDAGLAHLSPLVALQHLDLS-NCLSLKDAGLAHLTL 513
Query: 275 LTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLS 332
L L+ LNL+ C + D GL +LT L L+ L+LS + +GL HL+ L L+ +++S
Sbjct: 514 LVTLKYLNLNKCHNLTDAGLAHLTPLVALQHLDLSQCPNLTGTGLAHLNSLMALQHLDMS 573
Query: 333 F-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDL 379
+ ++D L L L +L+ LNL ++TD GLA L L L HLDL
Sbjct: 574 WCHNLTDAGLTHLTPLVNLRHLNLTKCPKLTDAGLAHLAPLVALEHLDL 622
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 106/309 (34%), Positives = 166/309 (53%), Gaps = 9/309 (2%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNF 90
ALQ L L P + D + + S +L ++LS S+ TD+GL HL L L+ ++
Sbjct: 316 ALQHLELSDCPRLTDAGLAHLTSL-VALQYLNLSECSNFTDAGLAHLTPLLTLTHLNLSW 374
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLV 149
C + GL HL L L L+ IT G+ + L+ L L+L C+ + GL
Sbjct: 375 CYNFTHAGLAHLTPLVALQHLNLGHCRNITDAGLAHLSPLVALQHLNLGWCSNLTDAGLA 434
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTL 208
+L L+ L+ L++ WC+ +TD+ + L+ L L+ L +S C +TD+G+A+L L L
Sbjct: 435 HLSPLVALQHLDLGWCSNLTDAGLAHLTSLVALQHLDLSWCYYLTDAGLAHLSPLVALQH 494
Query: 209 LNLEGC-PVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF-NEIT 265
L+L C + A L L+ L +L YLNLN+C L+D G + + +L+ L+L +T
Sbjct: 495 LDLSNCLSLKDAGLAHLTLLVTLKYLNLNKCHNLTDAGLAHLTPLVALQHLDLSQCPNLT 554
Query: 266 DECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGL 323
L HL L L+ L++ C + D GL +LT L NL+ L L+ ++ +GL HL+ L
Sbjct: 555 GTGLAHLNSLMALQHLDMSWCHNLTDAGLTHLTPLVNLRHLNLTKCPKLTDAGLAHLAPL 614
Query: 324 TNLESINLS 332
LE ++LS
Sbjct: 615 VALEHLDLS 623
>gi|298709085|emb|CBJ31033.1| Hypothetical leucine rich repeat protein [Ectocarpus siliculosus]
Length = 573
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 135/447 (30%), Positives = 200/447 (44%), Gaps = 64/447 (14%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQ---GSS 58
LPR++ + L R L+ +L AFRDC + L LG+ GV + W+ + G
Sbjct: 22 LPREVVDALLGSLTQHRALSSYALRAFRDCEVTSLALGECRGVRNGWVRELLQATPCGRC 81
Query: 59 LLSVDLSG-SDVTDSGL-----------IHLKDCSNL--------------QSLDFNFCI 92
++++DLS + +TD+GL L+ CS L ++L C
Sbjct: 82 IVTLDLSSCTGLTDTGLSDLPALKSLESASLRRCSGLGTEATLCLSNSPGLETLSLAHCP 141
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN-L 151
+ D + +L GLS L SL I+ +G++ L +L L+ RC HG V+ L
Sbjct: 142 LLDDAAVGNLAGLSRLRSLELEGCENISDEGLRLACRLPSLTCLNASRC---HGLTVDGL 198
Query: 152 KGLMK----LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIA--------- 198
GL + L+ LN+ WC + + G +
Sbjct: 199 AGLEQAAGGLKRLNLGWCAGLVRGSAAAGGRGGEESDDEDDEDDEDGGGDSDDEGLGGGR 258
Query: 199 --------YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC---QLSDDGCEK 247
L L KL + L + L LSA GS +L+ C +L++ G
Sbjct: 259 RRRRRGRWVLPVLPKLERVCLARSGIGNEGLSRLSA-GSPLLRDLDLCGCVRLTESGAHT 317
Query: 248 FSKIGSLKVLNLGFNEI---TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 304
S + L+ L+L + +E L GLT +LNLD C +GD G+ L+ L L+
Sbjct: 318 LSALQDLETLDLSNCRVYSCVEELAQKLPGLT---ALNLDRCNVGDTGVRALSSLTKLER 374
Query: 305 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 364
L L+DT + +G+ HL+ LT L +NL F I+D L LA LS+L LNLD R + D G
Sbjct: 375 LNLADTSITDAGMTHLAPLTRLRDLNLFFCHITDAGLGPLAALSNLVRLNLDTRDVGDAG 434
Query: 365 LAALTSLTGLTHLDLFGARITDSGAAY 391
+ LT L L LD+F A ITD G A+
Sbjct: 435 MVQLTRLRLLESLDVFSASITDFGVAH 461
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 97/292 (33%), Positives = 142/292 (48%), Gaps = 34/292 (11%)
Query: 138 LERCTRIHGGLVNLKGLMKLES-----LNIKWCNCI--TDSDMKPLSGLTNLKSLQISCS 190
LER G+ N +GL +L + ++ C C+ T+S LS L +L++L +S
Sbjct: 274 LERVCLARSGIGN-EGLSRLSAGSPLLRDLDLCGCVRLTESGAHTLSALQDLETLDLSNC 332
Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 250
+V + L LT LNL+ C V + +LS+L L LNL ++D G +
Sbjct: 333 RVYSCVEELAQKLPGLTALNLDRCNVGDTGVRALSSLTKLERLNLADTSITDAGMTHLAP 392
Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT------------- 297
+ L+ LNL F ITD L L L+NL LNLD+ +GD G+V LT
Sbjct: 393 LTRLRDLNLFFCHITDAGLGPLAALSNLVRLNLDTRDVGDAGMVQLTRLRLLESLDVFSA 452
Query: 298 ---------GLCNLKC---LELSDTQVGSSGLRHLSGLTNLESINLSFT-GISDGSLRKL 344
GLC L C LE+ ++ GL HLS + +L +N+S GI+ +R +
Sbjct: 453 SITDFGVAHGLCRLPCLTTLEVCSGRLTDRGLYHLSRVKSLTRLNVSQNFGITAAGVRHV 512
Query: 345 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRSKF 396
L+ L+SLNL + IT + L +LT L L L +FG R+ + LR K
Sbjct: 513 GTLTRLRSLNLSSCNITPSSLNSLTGLVNLESLSVFGCRLEMTDLELLREKL 564
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 71/240 (29%), Positives = 115/240 (47%), Gaps = 29/240 (12%)
Query: 49 MDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNL 108
++ +A + L +++L +V D+G+ L + L+ L+ I+D G+ HL L+ L
Sbjct: 338 VEELAQKLPGLTALNLDRCNVGDTGVRALSSLTKLERLNLAD-TSITDAGMTHLAPLTRL 396
Query: 109 TSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCI 168
L+ + IT G+ A L NLV+L+L+ G+V L L LESL++ + I
Sbjct: 397 RDLNLFFCH-ITDAGLGPLAALSNLVRLNLDTRDVGDAGMVQLTRLRLLESLDV-FSASI 454
Query: 169 TDSDMKP-LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL-EGCPVTAACLDSLSA 226
TD + L L L +L++ ++TD G+ +L ++ LT LN+ + +TAA + +
Sbjct: 455 TDFGVAHGLCRLPCLTTLEVCSGRLTDRGLYHLSRVKSLTRLNVSQNFGITAAGVRHVGT 514
Query: 227 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 286
L L LNL+ C IT L L GL NLESL++ C
Sbjct: 515 LTRLRSLNLSSCN------------------------ITPSSLNSLTGLVNLESLSVFGC 550
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 64/134 (47%), Gaps = 24/134 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLD-FNFCI----------------------- 92
S+L+ ++L DV D+G++ L L+SLD F+ I
Sbjct: 418 SNLVRLNLDTRDVGDAGMVQLTRLRLLESLDVFSASITDFGVAHGLCRLPCLTTLEVCSG 477
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
+++D GL HL + +LT L+ +N ITA G++ L L L+L C L +L
Sbjct: 478 RLTDRGLYHLSRVKSLTRLNVSQNFGITAAGVRHVGTLTRLRSLNLSSCNITPSSLNSLT 537
Query: 153 GLMKLESLNIKWCN 166
GL+ LESL++ C
Sbjct: 538 GLVNLESLSVFGCR 551
>gi|149174278|ref|ZP_01852905.1| serine/threonine protein kinase [Planctomyces maris DSM 8797]
gi|148846823|gb|EDL61159.1| serine/threonine protein kinase [Planctomyces maris DSM 8797]
Length = 1815
Score = 138 bits (348), Expect = 4e-30, Method: Composition-based stats.
Identities = 124/421 (29%), Positives = 187/421 (44%), Gaps = 84/421 (19%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S SL ++ + + +++SG+ LKD L+ L F QI GL HL+ L NL L
Sbjct: 1328 SNMPSLTTLYVGSTAISNSGVEQLKDMKQLEKLSFT-NTQIDGVGLGHLKDLKNLKILGL 1386
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
+ +I+ ++ GL L+ L L C GL LK L L+ L++ ITD +
Sbjct: 1387 -ESTSISDVDLQHLHGLKILIVLGLSNCKIADSGLAYLKDLKNLKVLSLD-STPITDEGL 1444
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYL-KGLQKLTLLN---------------------- 210
K LSGL L++L++ +KVT GIA L K L +++
Sbjct: 1445 KHLSGLKMLQTLELQKTKVTPQGIASLQKALPNCKIVSDFETKPIMTSDSPMTDREIAEW 1504
Query: 211 -----------------LEGCPVTAACLDSLS---------------ALGSLFYLNLNRC 238
+E P +S+S L +L YL L
Sbjct: 1505 VIGMGGGIGIGFKLNYKIEELPTEPVIFNSVSLKNASFEDHDLQRLAKLKTLKYLFLEST 1564
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
+SD G + ++ +L+ + L + ITDE L+HL+GL NL L L I EGL +L
Sbjct: 1565 SISDTGLQYLRQMQNLEEIFLDYTNITDEGLLHLRGLQNLRVLRLSKTKITGEGLGHLKD 1624
Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF------TG----------------- 335
L L ++++ + +SG++ + L L S+N+SF TG
Sbjct: 1625 LPRLHTIDVNRAAITNSGMKAMGDLKQLTSLNISFNSQVDDTGLGYIEGLTKLEKLFAHL 1684
Query: 336 ---ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
I+D L+ L G+ L+SL L + IT TGL LT L+ LDL +ITDSG +L
Sbjct: 1685 VPKITDEGLKHLQGMKQLESLTLSSTGITTTGLEQLTKHESLSKLDLTNCKITDSGLEHL 1744
Query: 393 R 393
+
Sbjct: 1745 Q 1745
Score = 125 bits (313), Expect = 5e-26, Method: Composition-based stats.
Identities = 115/371 (30%), Positives = 175/371 (47%), Gaps = 53/371 (14%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCS-NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+L ++L + V+D+GL +LKD N SL QI+D G +L + +LT+L + +
Sbjct: 1285 TLPKLNLENTLVSDTGLQYLKDIPLNYISL---IGTQITDKGFGYLSNMPSLTTL-YVGS 1340
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKP 175
AI+ G++ + L KL T+I G GL +LK L L+ L ++ I+D D++
Sbjct: 1341 TAISNSGVEQLKDMKQLEKLSFTN-TQIDGVGLGHLKDLKNLKILGLE-STSISDVDLQH 1398
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
L GL L L +S K+ DSG+AYLK L+ L +L+L+ P+T L LS L L L L
Sbjct: 1399 LHGLKILIVLGLSNCKIADSGLAYLKDLKNLKVLSLDSTPITDEGLKHLSGLKMLQTLEL 1458
Query: 236 NRCQLSDDGCEKFSK-IGSLKV-------------------------------------L 257
+ +++ G K + + K+ L
Sbjct: 1459 QKTKVTPQGIASLQKALPNCKIVSDFETKPIMTSDSPMTDREIAEWVIGMGGGIGIGFKL 1518
Query: 258 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 317
N E+ E ++ S++L + D L L L LK L L T + +GL
Sbjct: 1519 NYKIEELPTEPVI-------FNSVSLKNASFEDHDLQRLAKLKTLKYLFLESTSISDTGL 1571
Query: 318 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 377
++L + NLE I L +T I+D L L GL +L+ L L +IT GL L L L +
Sbjct: 1572 QYLRQMQNLEEIFLDYTNITDEGLLHLRGLQNLRVLRLSKTKITGEGLGHLKDLPRLHTI 1631
Query: 378 DLFGARITDSG 388
D+ A IT+SG
Sbjct: 1632 DVNRAAITNSG 1642
Score = 123 bits (309), Expect = 2e-25, Method: Composition-based stats.
Identities = 81/248 (32%), Positives = 135/248 (54%), Gaps = 4/248 (1%)
Query: 150 NLKGLMKLESLNIKW--CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 207
+L+ L KL++L + I+D+ ++ L + NL+ + + + +TD G+ +L+GLQ L
Sbjct: 1546 DLQRLAKLKTLKYLFLESTSISDTGLQYLRQMQNLEEIFLDYTNITDEGLLHLRGLQNLR 1605
Query: 208 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN-EITD 266
+L L +T L L L L +++NR +++ G + + L LN+ FN ++ D
Sbjct: 1606 VLRLSKTKITGEGLGHLKDLPRLHTIDVNRAAITNSGMKAMGDLKQLTSLNISFNSQVDD 1665
Query: 267 ECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 325
L +++GLT LE L I DEGL +L G+ L+ L LS T + ++GL L+ +
Sbjct: 1666 TGLGYIEGLTKLEKLFAHLVPKITDEGLKHLQGMKQLESLTLSSTGITTTGLEQLTKHES 1725
Query: 326 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
L ++L+ I+D L L L +L+ L LD ++D GL L SL L +LDL ++T
Sbjct: 1726 LSKLDLTNCKITDSGLEHLQDLKNLRDLRLDLTPVSDAGLQHLYSLKKLENLDLRETKVT 1785
Query: 386 DSGAAYLR 393
G A L+
Sbjct: 1786 SQGIADLQ 1793
Score = 122 bits (306), Expect = 3e-25, Method: Composition-based stats.
Identities = 85/256 (33%), Positives = 135/256 (52%), Gaps = 3/256 (1%)
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
+N + ++ A L L L LE + GL L+ + LE + + + N ITD +
Sbjct: 1538 KNASFEDHDLQRLAKLKTLKYLFLESTSISDTGLQYLRQMQNLEEIFLDYTN-ITDEGLL 1596
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
L GL NL+ L++S +K+T G+ +LK L +L +++ +T + + ++ L L LN
Sbjct: 1597 HLRGLQNLRVLRLSKTKITGEGLGHLKDLPRLHTIDVNRAAITNSGMKAMGDLKQLTSLN 1656
Query: 235 LN-RCQLSDDGCEKFSKIGSL-KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
++ Q+ D G + L K+ +ITDE L HL+G+ LESL L S GI G
Sbjct: 1657 ISFNSQVDDTGLGYIEGLTKLEKLFAHLVPKITDEGLKHLQGMKQLESLTLSSTGITTTG 1716
Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
L LT +L L+L++ ++ SGL HL L NL + L T +SD L+ L L L++
Sbjct: 1717 LEQLTKHESLSKLDLTNCKITDSGLEHLQDLKNLRDLRLDLTPVSDAGLQHLYSLKKLEN 1776
Query: 353 LNLDARQITDTGLAAL 368
L+L ++T G+A L
Sbjct: 1777 LDLRETKVTSQGIADL 1792
Score = 100 bits (248), Expect = 2e-18, Method: Composition-based stats.
Identities = 74/226 (32%), Positives = 108/226 (47%), Gaps = 25/226 (11%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
+ D D+K L+GL L L + + V+D+G+ YLK +
Sbjct: 1272 VKDDDLKRLAGLKTLPKLNLENTLVSDTGLQYLKDI------------------------ 1307
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
L Y++L Q++D G S + SL L +G I++ + LK + LE L+ +
Sbjct: 1308 -PLNYISLIGTQITDKGFGYLSNMPSLTTLYVGSTAISNSGVEQLKDMKQLEKLSFTNTQ 1366
Query: 288 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 347
I GL +L L NLK L L T + L+HL GL L + LS I+D L L L
Sbjct: 1367 IDGVGLGHLKDLKNLKILGLESTSISDVDLQHLHGLKILIVLGLSNCKIADSGLAYLKDL 1426
Query: 348 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
+LK L+LD+ ITD GL L+ L L L+L ++T G A L+
Sbjct: 1427 KNLKVLSLDSTPITDEGLKHLSGLKMLQTLELQKTKVTPQGIASLQ 1472
Score = 99.8 bits (247), Expect = 2e-18, Method: Composition-based stats.
Identities = 74/243 (30%), Positives = 119/243 (48%), Gaps = 27/243 (11%)
Query: 55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
Q +L + L +++TD GL+HL+ NL+ L + +I+ GL HL+ L L ++
Sbjct: 1576 QMQNLEEIFLDYTNITDEGLLHLRGLQNLRVLRLS-KTKITGEGLGHLKDLPRLHTIDVN 1634
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDM 173
R AIT GMKA L L L++ +++ GL ++GL KLE L ITD +
Sbjct: 1635 RA-AITNSGMKAMGDLKQLTSLNISFNSQVDDTGLGYIEGLTKLEKLFAHLVPKITDEGL 1693
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
K L G+ L+SL +S + +T +G L+ L+ SL L
Sbjct: 1694 KHLQGMKQLESLTLSSTGITTTG------------------------LEQLTKHESLSKL 1729
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+L C+++D G E + +L+ L L ++D L HL L LE+L+L + +G+
Sbjct: 1730 DLTNCKITDSGLEHLQDLKNLRDLRLDLTPVSDAGLQHLYSLKKLENLDLRETKVTSQGI 1789
Query: 294 VNL 296
+L
Sbjct: 1790 ADL 1792
Score = 90.9 bits (224), Expect = 1e-15, Method: Composition-based stats.
Identities = 67/227 (29%), Positives = 111/227 (48%), Gaps = 8/227 (3%)
Query: 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS 195
LDL+ + L L GL L LN++ ++D+ ++ L + L + + +++TD
Sbjct: 1265 LDLKGTSVKDDDLKRLAGLKTLPKLNLE-NTLVSDTGLQYLKDIP-LNYISLIGTQITDK 1322
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G YL + LT L + ++ + ++ L + L L+ Q+ G + +LK
Sbjct: 1323 GFGYLSNMPSLTTLYVGSTAISNSGVEQLKDMKQLEKLSFTNTQIDGVGLGHLKDLKNLK 1382
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 315
+L L I+D L HL GL L L L +C I D GL L L NLK L L T +
Sbjct: 1383 ILGLESTSISDVDLQHLHGLKILIVLGLSNCKIADSGLAYLKDLKNLKVLSLDSTPITDE 1442
Query: 316 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
GL+HLSGL L+++ L T ++ G++SL+ + + ++D
Sbjct: 1443 GLKHLSGLKMLQTLELQKTKVTP------QGIASLQKALPNCKIVSD 1483
Score = 89.4 bits (220), Expect = 3e-15, Method: Composition-based stats.
Identities = 65/187 (34%), Positives = 94/187 (50%), Gaps = 1/187 (0%)
Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265
+ L+L+G V L L+ L +L LNL +SD G + I L ++L +IT
Sbjct: 1262 INFLDLKGTSVKDDDLKRLAGLKTLPKLNLENTLVSDTGLQYLKDI-PLNYISLIGTQIT 1320
Query: 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 325
D+ +L + +L +L + S I + G+ L + L+ L ++TQ+ GL HL L N
Sbjct: 1321 DKGFGYLSNMPSLTTLYVGSTAISNSGVEQLKDMKQLEKLSFTNTQIDGVGLGHLKDLKN 1380
Query: 326 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
L+ + L T ISD L+ L GL L L L +I D+GLA L L L L L IT
Sbjct: 1381 LKILGLESTSISDVDLQHLHGLKILIVLGLSNCKIADSGLAYLKDLKNLKVLSLDSTPIT 1440
Query: 386 DSGAAYL 392
D G +L
Sbjct: 1441 DEGLKHL 1447
Score = 59.7 bits (143), Expect = 3e-06, Method: Composition-based stats.
Identities = 48/163 (29%), Positives = 73/163 (44%), Gaps = 23/163 (14%)
Query: 254 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL----------VNLTG----- 298
+ L+L + D+ L L GL L LNL++ + D GL ++L G
Sbjct: 1262 INFLDLKGTSVKDDDLKRLAGLKTLPKLNLENTLVSDTGLQYLKDIPLNYISLIGTQITD 1321
Query: 299 --------LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 350
+ +L L + T + +SG+ L + LE ++ + T I L L L +L
Sbjct: 1322 KGFGYLSNMPSLTTLYVGSTAISNSGVEQLKDMKQLEKLSFTNTQIDGVGLGHLKDLKNL 1381
Query: 351 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
K L L++ I+D L L L L L L +I DSG AYL+
Sbjct: 1382 KILGLESTSISDVDLQHLHGLKILIVLGLSNCKIADSGLAYLK 1424
>gi|46447300|ref|YP_008665.1| hypothetical protein pc1666 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400941|emb|CAF24390.1| hypothetical protein pc1666 [Candidatus Protochlamydia amoebophila
UWE25]
Length = 518
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 104/296 (35%), Positives = 162/296 (54%), Gaps = 10/296 (3%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
++TD+GL HL LQ L+ ++C +++D GL HL L L L + +T G+
Sbjct: 221 NLTDAGLSHLAPLVTLQHLNLSYCSKLTDAGLAHLTSLVTLQHLDLSKCYNLTDAGLTHL 280
Query: 128 AGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
L L L+L C+++ GL +L L+ L+ L++ WC +TD + L+ L L+ L
Sbjct: 281 TPLAALQHLNLSYCSKLTDAGLAHLTSLVTLQHLDLTWCVNLTDVGLAHLTPLAALQHLN 340
Query: 187 IS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQ-LSDD 243
+S C K+TD G+A+L L L L+L C +T L L+ L +L +L L++C L+D
Sbjct: 341 LSYCIKLTDVGLAHLTSLVALQHLDLTWCVNLTEVGLAHLTPLVTLQHLELSKCHNLTDA 400
Query: 244 GCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCN 301
G + + +L+ LNL +ITD L HL L L+ L+L C + D GL +LT L
Sbjct: 401 GLAHLTSLVALQHLNLSICKKITDVGLAHLTPLVALQHLDLSGCDKLTDVGLAHLTTLVA 460
Query: 302 LKCLELS-DTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNL 355
L+ L+L+ + +GL HL L L+ +NLS+ T ++D L L++ SLNL
Sbjct: 461 LQHLDLTCCVNLTDAGLVHLKPLMALQHLNLSYCTNLTDAGLAHFKNLTT--SLNL 514
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 108/311 (34%), Positives = 167/311 (53%), Gaps = 9/311 (2%)
Query: 71 DSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL 130
D+ L+ LK+C NL+ L C ++D GL HL L L L+ + +T G+ L
Sbjct: 199 DAHLLTLKNCKNLKVLYLQECHNLTDAGLSHLAPLVTLQHLNLSYCSKLTDAGLAHLTSL 258
Query: 131 INLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS- 188
+ L LDL +C + GL +L L L+ LN+ +C+ +TD+ + L+ L L+ L ++
Sbjct: 259 VTLQHLDLSKCYNLTDAGLTHLTPLAALQHLNLSYCSKLTDAGLAHLTSLVTLQHLDLTW 318
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCE 246
C +TD G+A+L L L LNL C +T L L++L +L +L+L C L++ G
Sbjct: 319 CVNLTDVGLAHLTPLAALQHLNLSYCIKLTDVGLAHLTSLVALQHLDLTWCVNLTEVGLA 378
Query: 247 KFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKC 304
+ + +L+ L L + +TD L HL L L+ LNL C I D GL +LT L L+
Sbjct: 379 HLTPLVTLQHLELSKCHNLTDAGLAHLTSLVALQHLNLSICKKITDVGLAHLTPLVALQH 438
Query: 305 LELSD-TQVGSSGLRHLSGLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNLDA-RQIT 361
L+LS ++ GL HL+ L L+ ++L+ ++D L L L +L+ LNL +T
Sbjct: 439 LDLSGCDKLTDVGLAHLTTLVALQHLDLTCCVNLTDAGLVHLKPLMALQHLNLSYCTNLT 498
Query: 362 DTGLAALTSLT 372
D GLA +LT
Sbjct: 499 DAGLAHFKNLT 509
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 100/265 (37%), Positives = 150/265 (56%), Gaps = 9/265 (3%)
Query: 139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGI 197
E I L+ LK L+ L ++ C+ +TD+ + L+ L L+ L +S CSK+TD+G+
Sbjct: 193 ENTYLIDAHLLTLKNCKNLKVLYLQECHNLTDAGLSHLAPLVTLQHLNLSYCSKLTDAGL 252
Query: 198 AYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLK 255
A+L L L L+L C +T A L L+ L +L +LNL+ C +L+D G + + +L+
Sbjct: 253 AHLTSLVTLQHLDLSKCYNLTDAGLTHLTPLAALQHLNLSYCSKLTDAGLAHLTSLVTLQ 312
Query: 256 VLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQV 312
L+L + +TD L HL L L+ LNL C + D GL +LT L L+ L+L+ +
Sbjct: 313 HLDLTWCVNLTDVGLAHLTPLAALQHLNLSYCIKLTDVGLAHLTSLVALQHLDLTWCVNL 372
Query: 313 GSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTS 370
GL HL+ L L+ + LS ++D L L L +L+ LNL ++ITD GLA LT
Sbjct: 373 TEVGLAHLTPLVTLQHLELSKCHNLTDAGLAHLTSLVALQHLNLSICKKITDVGLAHLTP 432
Query: 371 LTGLTHLDLFGA-RITDSGAAYLRS 394
L L HLDL G ++TD G A+L +
Sbjct: 433 LVALQHLDLSGCDKLTDVGLAHLTT 457
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 97/275 (35%), Positives = 149/275 (54%), Gaps = 9/275 (3%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
S +TD+GL HL LQ LD + C ++D GL HL L+ L L+ + +T G+
Sbjct: 245 SKLTDAGLAHLTSLVTLQHLDLSKCYNLTDAGLTHLTPLAALQHLNLSYCSKLTDAGLAH 304
Query: 127 FAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
L+ L LDL C + GL +L L L+ LN+ +C +TD + L+ L L+ L
Sbjct: 305 LTSLVTLQHLDLTWCVNLTDVGLAHLTPLAALQHLNLSYCIKLTDVGLAHLTSLVALQHL 364
Query: 186 QIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSD 242
++ C +T+ G+A+L L L L L C +T A L L++L +L +LNL+ C +++D
Sbjct: 365 DLTWCVNLTEVGLAHLTPLVTLQHLELSKCHNLTDAGLAHLTSLVALQHLNLSICKKITD 424
Query: 243 DGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLC 300
G + + +L+ L+L G +++TD L HL L L+ L+L C + D GLV+L L
Sbjct: 425 VGLAHLTPLVALQHLDLSGCDKLTDVGLAHLTTLVALQHLDLTCCVNLTDAGLVHLKPLM 484
Query: 301 NLKCLELSD-TQVGSSGLRHLSGLTNLESINLSFT 334
L+ L LS T + +GL H LT S+NL +
Sbjct: 485 ALQHLNLSYCTNLTDAGLAHFKNLTT--SLNLKLS 517
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 58 SLLSVDLSGSD-VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+L +DLSG D +TD GL HL LQ LD C+ ++D GL HL+ L L L+
Sbjct: 435 ALQHLDLSGCDKLTDVGLAHLTTLVALQHLDLTCCVNLTDAGLVHLKPLMALQHLNLSYC 494
Query: 117 NAITAQGMKAFAGLINLVKLDLER 140
+T G+ F L + L L R
Sbjct: 495 TNLTDAGLAHFKNLTTSLNLKLSR 518
>gi|168698219|ref|ZP_02730496.1| hypothetical protein GobsU_01767 [Gemmata obscuriglobus UQM 2246]
Length = 380
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 108/328 (32%), Positives = 165/328 (50%), Gaps = 8/328 (2%)
Query: 43 GVNDKWMDVIASQGSSLLSVDLS-----GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDG 97
V + V+ + VDLS G VTD L L +L S+D + +++
Sbjct: 29 AVEKVYGKVLRDANQVITGVDLSAGAAQGHRVTDEELKELLPLKSLTSIDLSHT-GVTNA 87
Query: 98 GLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
GL+ L +LT+LS + IT G+K A L NL +L GL L + L
Sbjct: 88 GLKVLVAFKSLTTLSLH-DTGITDAGLKELAPLKNLTAFNLSNTKVTDTGLKELTAIRNL 146
Query: 158 ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
+L+++ ITD+ +K L + +L +L +S +KVTD+G+ L L++LT L L VT
Sbjct: 147 TALHLRKTE-ITDAGLKSLPPMKDLTTLDLSDTKVTDAGLKALAPLERLTNLYLYNTEVT 205
Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 277
L L+ +L L L +++D G ++ + + SL VL LG E+TD L L L N
Sbjct: 206 DTGLKELAPSKNLAVLLLYNTKVTDAGLKELAPLKSLSVLVLGETEVTDAGLKELAPLKN 265
Query: 278 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 337
L +LNL + D G+ L NL L+LS T V +G++ L+ NL + LS T ++
Sbjct: 266 LTALNLYGTKVTDAGVKELAPFQNLTLLDLSGTNVTDAGIKELARFKNLAHLELSSTAVT 325
Query: 338 DGSLRKLAGLSSLKSLNLDARQITDTGL 365
D L++LA L L L L + + T G+
Sbjct: 326 DVGLKELASLKKLTKLFLISTKTTFAGI 353
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 90/276 (32%), Positives = 142/276 (51%), Gaps = 1/276 (0%)
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
+T + +K L +L +DL + GL L L +L++ ITD+ +K L+
Sbjct: 60 VTDEELKELLPLKSLTSIDLSHTGVTNAGLKVLVAFKSLTTLSLH-DTGITDAGLKELAP 118
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
L NL + +S +KVTD+G+ L ++ LT L+L +T A L SL + L L+L+
Sbjct: 119 LKNLTAFNLSNTKVTDTGLKELTAIRNLTALHLRKTEITDAGLKSLPPMKDLTTLDLSDT 178
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
+++D G + + + L L L E+TD L L NL L L + + D GL L
Sbjct: 179 KVTDAGLKALAPLERLTNLYLYNTEVTDTGLKELAPSKNLAVLLLYNTKVTDAGLKELAP 238
Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
L +L L L +T+V +GL+ L+ L NL ++NL T ++D +++LA +L L+L
Sbjct: 239 LKSLSVLVLGETEVTDAGLKELAPLKNLTALNLYGTKVTDAGVKELAPFQNLTLLDLSGT 298
Query: 359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRS 394
+TD G+ L L HL+L +TD G L S
Sbjct: 299 NVTDAGIKELARFKNLAHLELSSTAVTDVGLKELAS 334
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 88/281 (31%), Positives = 143/281 (50%), Gaps = 6/281 (2%)
Query: 41 YPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC-IQISDGGL 99
+ GV + + V+ + SL ++ L + +TD+GL L NL + FN +++D GL
Sbjct: 81 HTGVTNAGLKVLVA-FKSLTTLSLHDTGITDAGLKELAPLKNLTA--FNLSNTKVTDTGL 137
Query: 100 EHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 159
+ L + NLT+L R+ IT G+K+ + +L LDL GL L L +L +
Sbjct: 138 KELTAIRNLTALHLRKTE-ITDAGLKSLPPMKDLTTLDLSDTKVTDAGLKALAPLERLTN 196
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
L + + +TD+ +K L+ NL L + +KVTD+G+ L L+ L++L L VT A
Sbjct: 197 LYL-YNTEVTDTGLKELAPSKNLAVLLLYNTKVTDAGLKELAPLKSLSVLVLGETEVTDA 255
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
L L+ L +L LNL +++D G ++ + +L +L+L +TD + L NL
Sbjct: 256 GLKELAPLKNLTALNLYGTKVTDAGVKELAPFQNLTLLDLSGTNVTDAGIKELARFKNLA 315
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 320
L L S + D GL L L L L L T+ +G++
Sbjct: 316 HLELSSTAVTDVGLKELASLKKLTKLFLISTKTTFAGIKEF 356
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 74/240 (30%), Positives = 108/240 (45%), Gaps = 18/240 (7%)
Query: 11 FNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVT 70
EL R LT + L R + D L P + D L ++DLS + VT
Sbjct: 137 LKELTAIRNLTALHL---RKTEITDAGLKSLPPMKD------------LTTLDLSDTKVT 181
Query: 71 DSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL 130
D+GL L L +L + + +++D GL+ L NL L N +T G+K A L
Sbjct: 182 DAGLKALAPLERLTNL-YLYNTEVTDTGLKELAPSKNLAVL-LLYNTKVTDAGLKELAPL 239
Query: 131 INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS 190
+L L L GL L L L +LN+ + +TD+ +K L+ NL L +S +
Sbjct: 240 KSLSVLVLGETEVTDAGLKELAPLKNLTALNL-YGTKVTDAGVKELAPFQNLTLLDLSGT 298
Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 250
VTD+GI L + L L L VT L L++L L L L + + G ++F K
Sbjct: 299 NVTDAGIKELARFKNLAHLELSSTAVTDVGLKELASLKKLTKLFLISTKTTFAGIKEFQK 358
>gi|46446916|ref|YP_008281.1| hypothetical protein pc1282 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400557|emb|CAF24006.1| conserved hypothetical protein [Candidatus Protochlamydia amoebophila
UWE25]
Length = 1082
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 108/318 (33%), Positives = 164/318 (51%), Gaps = 30/318 (9%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TD+ L+ LK+C NL++L C ++D GL HL L L L + T G+
Sbjct: 781 LTDAHLLALKNCKNLKALHLQECPNLTDAGLAHLTSLVTLQHLDLSYCSNFTDAGLAHLR 840
Query: 129 GLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
L+ L L+L C + GL +L L+ L+ L++ +C+ TD+ + L+ L L+ L +
Sbjct: 841 PLVALTHLNLRWCRNLTDAGLAHLTPLVALKYLDLSYCSNFTDAGLTHLTPLVTLQHLDL 900
Query: 188 S-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQLSDDGC 245
S CS TD+G+A+L+ L LT LNL C T A L L+ L +L +LNLN C
Sbjct: 901 SCCSNFTDAGLAHLRPLVALTHLNLRWCHNFTDAGLAHLTPLVALQHLNLNLCW------ 954
Query: 246 EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKC 304
++TD L HL+ L L++L+L C D GL +LT L L+
Sbjct: 955 -----------------KLTDAGLAHLRPLVALQNLDLSYCSNFTDAGLAHLTPLVVLQH 997
Query: 305 LELSD-TQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQIT 361
L+LS ++ +GL HL+ L L+ ++LS+ ++D LR L L +L+ L L + T
Sbjct: 998 LDLSSCKKLTDAGLAHLTPLVALQHLDLSWCNHLTDAGLRHLTPLLALQDLYLYSCENFT 1057
Query: 362 DTGLAALTSLTGLTHLDL 379
+ GLA S HL+L
Sbjct: 1058 EVGLAHFKSSVASLHLNL 1075
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 95/261 (36%), Positives = 146/261 (55%), Gaps = 19/261 (7%)
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQ 204
L+ LK L++L+++ C +TD+ + L+ L L+ L +S CS TD+G+A+L+ L
Sbjct: 784 AHLLALKNCKNLKALHLQECPNLTDAGLAHLTSLVTLQHLDLSYCSNFTDAGLAHLRPLV 843
Query: 205 KLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGF- 261
LT LNL C +T A L L+ L +L YL+L+ C +D G + + +L+ L+L
Sbjct: 844 ALTHLNLRWCRNLTDAGLAHLTPLVALKYLDLSYCSNFTDAGLTHLTPLVTLQHLDLSCC 903
Query: 262 NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLK------CLELSDTQVGS 314
+ TD L HL+ L L LNL C D GL +LT L L+ C +L+D
Sbjct: 904 SNFTDAGLAHLRPLVALTHLNLRWCHNFTDAGLAHLTPLVALQHLNLNLCWKLTD----- 958
Query: 315 SGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT 372
+GL HL L L++++LS+ + +D L L L L+ L+L + +++TD GLA LT L
Sbjct: 959 AGLAHLRPLVALQNLDLSYCSNFTDAGLAHLTPLVVLQHLDLSSCKKLTDAGLAHLTPLV 1018
Query: 373 GLTHLDL-FGARITDSGAAYL 392
L HLDL + +TD+G +L
Sbjct: 1019 ALQHLDLSWCNHLTDAGLRHL 1039
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 98/283 (34%), Positives = 153/283 (54%), Gaps = 10/283 (3%)
Query: 13 ELVYSR--CLTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SD 68
EL +S+ LT+ L A ++C L+ L L + P + D + + S +L +DLS S+
Sbjct: 772 ELNFSKNIFLTDAHLLALKNCKNLKALHLQECPNLTDAGLAHLTS-LVTLQHLDLSYCSN 830
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
TD+GL HL+ L L+ +C ++D GL HL L L L + T G+
Sbjct: 831 FTDAGLAHLRPLVALTHLNLRWCRNLTDAGLAHLTPLVALKYLDLSYCSNFTDAGLTHLT 890
Query: 129 GLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
L+ L LDL C+ GL +L+ L+ L LN++WC+ TD+ + L+ L L+ L +
Sbjct: 891 PLVTLQHLDLSCCSNFTDAGLAHLRPLVALTHLNLRWCHNFTDAGLAHLTPLVALQHLNL 950
Query: 188 S-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDDG 244
+ C K+TD+G+A+L+ L L L+L C T A L L+ L L +L+L+ C +L+D G
Sbjct: 951 NLCWKLTDAGLAHLRPLVALQNLDLSYCSNFTDAGLAHLTPLVVLQHLDLSSCKKLTDAG 1010
Query: 245 CEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC 286
+ + +L+ L+L + N +TD L HL L L+ L L SC
Sbjct: 1011 LAHLTPLVALQHLDLSWCNHLTDAGLRHLTPLLALQDLYLYSC 1053
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 89/246 (36%), Positives = 129/246 (52%), Gaps = 9/246 (3%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGC 214
++E LN +TD+ + L NLK+L + C +TD+G+A+L L L L+L C
Sbjct: 769 EIEELNFSKNIFLTDAHLLALKNCKNLKALHLQECPNLTDAGLAHLTSLVTLQHLDLSYC 828
Query: 215 P-VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF-NEITDECLVH 271
T A L L L +L +LNL C+ L+D G + + +LK L+L + + TD L H
Sbjct: 829 SNFTDAGLAHLRPLVALTHLNLRWCRNLTDAGLAHLTPLVALKYLDLSYCSNFTDAGLTH 888
Query: 272 LKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESI 329
L L L+ L+L C D GL +L L L L L +GL HL+ L L+ +
Sbjct: 889 LTPLVTLQHLDLSCCSNFTDAGLAHLRPLVALTHLNLRWCHNFTDAGLAHLTPLVALQHL 948
Query: 330 NLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFG-ARITD 386
NL+ ++D L L L +L++L+L TD GLA LT L L HLDL ++TD
Sbjct: 949 NLNLCWKLTDAGLAHLRPLVALQNLDLSYCSNFTDAGLAHLTPLVVLQHLDLSSCKKLTD 1008
Query: 387 SGAAYL 392
+G A+L
Sbjct: 1009 AGLAHL 1014
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 72/199 (36%), Positives = 110/199 (55%), Gaps = 11/199 (5%)
Query: 58 SLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+L +DLS S+ TD+GL HL LQ LD + C +D GL HLR L LT L+ R
Sbjct: 869 ALKYLDLSYCSNFTDAGLTHLTPLVTLQHLDLSCCSNFTDAGLAHLRPLVALTHLNLRWC 928
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
+ T G+ L+ L L+L C ++ GL +L+ L+ L++L++ +C+ TD+ +
Sbjct: 929 HNFTDAGLAHLTPLVALQHLNLNLCWKLTDAGLAHLRPLVALQNLDLSYCSNFTDAGLAH 988
Query: 176 LSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYL 233
L+ L L+ L + SC K+TD+G+A+L L L L+L C +T A L L+ L +L L
Sbjct: 989 LTPLVVLQHLDLSSCKKLTDAGLAHLTPLVALQHLDLSWCNHLTDAGLRHLTPLLALQDL 1048
Query: 234 NLNRCQLSDDGCEKFSKIG 252
L CE F+++G
Sbjct: 1049 YLY-------SCENFTEVG 1060
Score = 87.8 bits (216), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 81/149 (54%), Gaps = 2/149 (1%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+ TD+GL HL LQ L+ N C +++D GL HLR L L +L + T G+
Sbjct: 930 NFTDAGLAHLTPLVALQHLNLNLCWKLTDAGLAHLRPLVALQNLDLSYCSNFTDAGLAHL 989
Query: 128 AGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
L+ L LDL C ++ GL +L L+ L+ L++ WCN +TD+ ++ L+ L L+ L
Sbjct: 990 TPLVVLQHLDLSSCKKLTDAGLAHLTPLVALQHLDLSWCNHLTDAGLRHLTPLLALQDLY 1049
Query: 187 I-SCSKVTDSGIAYLKGLQKLTLLNLEGC 214
+ SC T+ G+A+ K LNL+ C
Sbjct: 1050 LYSCENFTEVGLAHFKSSVASLHLNLKWC 1078
Score = 46.6 bits (109), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 59 LLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
L +DLS +TD+GL HL LQ LD ++C ++D GL HL L L L
Sbjct: 995 LQHLDLSSCKKLTDAGLAHLTPLVALQHLDLSWCNHLTDAGLRHLTPLLALQDLYLYSCE 1054
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIH 145
T G+ F + + L+L+ C R
Sbjct: 1055 NFTEVGLAHFKSSVASLHLNLKWCKRFQ 1082
Score = 45.4 bits (106), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 64/133 (48%), Gaps = 17/133 (12%)
Query: 279 ESLNLDSCGIGDEGLVNLTGLCNLKC---LELSDTQVGSSGLRHLSGLTNLESI------ 329
+S L+ ++ LV L L N L + + + S L S LT E +
Sbjct: 709 KSQKLEPFNSSEDSLVELKALLNFAQQYRLNVLKSYLVDSLLNQTSQLTEFEKVLKYFSN 768
Query: 330 ---NLSFTG---ISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDL-FG 381
L+F+ ++D L L +LK+L+L + +TD GLA LTSL L HLDL +
Sbjct: 769 EIEELNFSKNIFLTDAHLLALKNCKNLKALHLQECPNLTDAGLAHLTSLVTLQHLDLSYC 828
Query: 382 ARITDSGAAYLRS 394
+ TD+G A+LR
Sbjct: 829 SNFTDAGLAHLRP 841
>gi|46447129|ref|YP_008494.1| hypothetical protein pc1495 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400770|emb|CAF24219.1| hypothetical protein pc1495 [Candidatus Protochlamydia amoebophila
UWE25]
Length = 559
Score = 134 bits (337), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 118/345 (34%), Positives = 181/345 (52%), Gaps = 36/345 (10%)
Query: 20 LTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHL 77
LT+ A +DC L+ L L + D + + + ++L ++LS +TD+GL+HL
Sbjct: 238 LTDAHFSALKDCKNLKVLHLVSCQAITDDRLAHL-TPLTALQHLNLSKCRKLTDTGLVHL 296
Query: 78 KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLD 137
+ LQ LD ++C ++D GL HL L L L+ R F L +
Sbjct: 297 TPLTALQHLDLSYCKNLTDAGLAHLTPLKALQHLNLR-----------GFGKLTD----- 340
Query: 138 LERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSG 196
GLV+L L L+ L++ WC +TD+ + L+ LT L+ L +S +TD+G
Sbjct: 341 --------AGLVHLTPLTALQYLDLSWCKNLTDAGLAHLTPLTGLQHLNLSGWYHLTDAG 392
Query: 197 IAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSL 254
+A L L L L+L C +T+A L+ L++L +L +L L+ C L+D G + + +L
Sbjct: 393 LARLIFLTALQHLDLSDCENLTSAGLERLTSLTALQHLGLSYCMNLTDAGLIHLTPLTAL 452
Query: 255 KVLNL-GFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQ 311
+ LNL G +TD LVHL LT L+ LNL C + D GL LT L L+ L LS
Sbjct: 453 QHLNLSGCFHLTDAGLVHLTPLTALQHLNLGGCENLTDAGLAYLTPLTALQHLNLSRCKH 512
Query: 312 VGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNL 355
+ +GL HL+ LT L+ +NLS+ ++D L + L++ SLNL
Sbjct: 513 LTEAGLTHLASLTALQHLNLSYCDNLTDAGLERFKALAA--SLNL 555
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 115/310 (37%), Positives = 168/310 (54%), Gaps = 23/310 (7%)
Query: 102 LRGLSN-LTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGG-LVNLKGLMKLES 159
+ LSN + +L+F N +T A NL L L C I L +L L L+
Sbjct: 220 INHLSNEIEALNFSNNTYLTDAHFSALKDCKNLKVLHLVSCQAITDDRLAHLTPLTALQH 279
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVT 217
LN+ C +TD+ + L+ LT L+ L +S C +TD+G+A+L L+ L LNL G +T
Sbjct: 280 LNLSKCRKLTDTGLVHLTPLTALQHLDLSYCKNLTDAGLAHLTPLKALQHLNLRGFGKLT 339
Query: 218 AACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGL 275
A L L+ L +L YL+L+ C+ L+D G + + L+ LNL G+ +TD L L L
Sbjct: 340 DAGLVHLTPLTALQYLDLSWCKNLTDAGLAHLTPLTGLQHLNLSGWYHLTDAGLARLIFL 399
Query: 276 TNLESLNLDSC----GIGDEGLVNLTGLCNL---KCLELSDTQVGSSGLRHLSGLTNLES 328
T L+ L+L C G E L +LT L +L C+ L+D +GL HL+ LT L+
Sbjct: 400 TALQHLDLSDCENLTSAGLERLTSLTALQHLGLSYCMNLTD-----AGLIHLTPLTALQH 454
Query: 329 INLS--FTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGAR-I 384
+NLS F ++D L L L++L+ LNL +TD GLA LT LT L HL+L + +
Sbjct: 455 LNLSGCF-HLTDAGLVHLTPLTALQHLNLGGCENLTDAGLAYLTPLTALQHLNLSRCKHL 513
Query: 385 TDSGAAYLRS 394
T++G +L S
Sbjct: 514 TEAGLTHLAS 523
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 110/330 (33%), Positives = 168/330 (50%), Gaps = 35/330 (10%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TD+ LKDC NL+ L C I+D L HL L+ L
Sbjct: 238 LTDAHFSALKDCKNLKVLHLVSCQAITDDRLAHLTPLTALQ------------------- 278
Query: 129 GLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
L+L +C ++ GLV+L L L+ L++ +C +TD+ + L+ L L+ L +
Sbjct: 279 ------HLNLSKCRKLTDTGLVHLTPLTALQHLDLSYCKNLTDAGLAHLTPLKALQHLNL 332
Query: 188 S-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLN-RCQLSDDG 244
K+TD+G+ +L L L L+L C +T A L L+ L L +LNL+ L+D G
Sbjct: 333 RGFGKLTDAGLVHLTPLTALQYLDLSWCKNLTDAGLAHLTPLTGLQHLNLSGWYHLTDAG 392
Query: 245 CEKFSKIGSLKVLNLGFNE-ITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNL 302
+ + +L+ L+L E +T L L LT L+ L L C + D GL++LT L L
Sbjct: 393 LARLIFLTALQHLDLSDCENLTSAGLERLTSLTALQHLGLSYCMNLTDAGLIHLTPLTAL 452
Query: 303 KCLELSD-TQVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNLDA-RQ 359
+ L LS + +GL HL+ LT L+ +NL ++D L L L++L+ LNL +
Sbjct: 453 QHLNLSGCFHLTDAGLVHLTPLTALQHLNLGGCENLTDAGLAYLTPLTALQHLNLSRCKH 512
Query: 360 ITDTGLAALTSLTGLTHLDL-FGARITDSG 388
+T+ GL L SLT L HL+L + +TD+G
Sbjct: 513 LTEAGLTHLASLTALQHLNLSYCDNLTDAG 542
Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 57 SSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
++L ++L G ++TD+GL +L + LQ L+ + C +++ GL HL L+ L L+
Sbjct: 475 TALQHLNLGGCENLTDAGLAYLTPLTALQHLNLSRCKHLTEAGLTHLASLTALQHLNLSY 534
Query: 116 NNAITAQGMKAFAGLINLVKLDLER 140
+ +T G++ F L + L + R
Sbjct: 535 CDNLTDAGLERFKALAASLNLKIIR 559
>gi|46446906|ref|YP_008271.1| hypothetical protein pc1272 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400547|emb|CAF23996.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 618
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 120/336 (35%), Positives = 172/336 (51%), Gaps = 34/336 (10%)
Query: 66 GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMK 125
+ +TD+ L+ LK+C NL+ L C ++D GL +L L+ L
Sbjct: 236 NASLTDAHLLALKNCKNLKVLHLQECRNLTDAGLAYLTPLTTLQ---------------- 279
Query: 126 AFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
L+L C + GL +L L+ L+ LN+ C +TD+ + L+ LT L L
Sbjct: 280 ---------HLNLAGCKFANAGLAHLTPLVALQHLNLSHCRNLTDAGLPHLTLLTALTYL 330
Query: 186 QIS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSD 242
+S C +TD+G+A+L L LT LNL C +T A L L+ L +L YLNL+ C L+D
Sbjct: 331 NLSHCRNITDAGLAHLTPLTALTYLNLSSCNNLTDAGLAHLTPLTALTYLNLSSCNNLTD 390
Query: 243 DGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLC 300
G + + +L LNL + TD L HL L L+ L+L C I D GL +LT L
Sbjct: 391 AGLAHLTPLVTLTHLNLSWCYNFTDAGLAHLTPLVALQHLDLGHCRNITDAGLAHLTPLV 450
Query: 301 NLKCLELSD-TQVGSSGLRHLSGLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNLDA- 357
L L LS +GL HL+ L L+ ++L+ ++D L LA L +L L+L +
Sbjct: 451 ALTHLNLSWCYNFTDAGLAHLAPLVALQHLDLNGCWQLTDAGLAHLAPLVALTHLDLSSC 510
Query: 358 RQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYL 392
+TD GL LT L L HLDL R +TD+G A+L
Sbjct: 511 NHLTDAGLPHLTPLVALQHLDLSYCRNLTDAGLAHL 546
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 120/392 (30%), Positives = 187/392 (47%), Gaps = 38/392 (9%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLL 60
P +I + F++ + LT+ L A ++C L+ L L + + D + + + ++L
Sbjct: 224 FPNEIEELNFSK---NASLTDAHLLALKNCKNLKVLHLQECRNLTDAGLAYL-TPLTTLQ 279
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISD------------------------ 96
++L+G ++GL HL LQ L+ + C ++D
Sbjct: 280 HLNLAGCKFANAGLAHLTPLVALQHLNLSHCRNLTDAGLPHLTLLTALTYLNLSHCRNIT 339
Query: 97 -GGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGL 154
GL HL L+ LT L+ N +T G+ L L L+L C + GL +L L
Sbjct: 340 DAGLAHLTPLTALTYLNLSSCNNLTDAGLAHLTPLTALTYLNLSSCNNLTDAGLAHLTPL 399
Query: 155 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEG 213
+ L LN+ WC TD+ + L+ L L+ L + C +TD+G+A+L L LT LNL
Sbjct: 400 VTLTHLNLSWCYNFTDAGLAHLTPLVALQHLDLGHCRNITDAGLAHLTPLVALTHLNLSW 459
Query: 214 CP-VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGF-NEITDECLV 270
C T A L L+ L +L +L+LN C QL+D G + + +L L+L N +TD L
Sbjct: 460 CYNFTDAGLAHLAPLVALQHLDLNGCWQLTDAGLAHLAPLVALTHLDLSSCNHLTDAGLP 519
Query: 271 HLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLES 328
HL L L+ L+L C + D GL +L L L L LS +GL HL+ L L+
Sbjct: 520 HLTPLVALQHLDLSYCRNLTDAGLAHLAPLVALTHLNLSSCNHFTDAGLTHLTPLLALQD 579
Query: 329 INLSF-TGISDGSLRKLAGLSSLKSLNLDARQ 359
+NL++ +D L L++ +LNL Q
Sbjct: 580 LNLNYCENFTDAGLAHFKSLATFPNLNLICYQ 611
>gi|46447548|ref|YP_008913.1| hypothetical protein pc1914 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46401189|emb|CAF24638.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 528
Score = 131 bits (329), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 112/317 (35%), Positives = 175/317 (55%), Gaps = 11/317 (3%)
Query: 65 SGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM 124
+ +T++ L+ LKDC N++ L F C ++D GL HL L L L +T G+
Sbjct: 203 ENTHLTNAHLLALKDCKNIEVLYFKKCRGVTDAGLAHLVPLKGLQHLDLSYCENLTDAGL 262
Query: 125 KAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
L L L+L C + GLV+L L+ L+ L++ +C +TD+ + L+ LT L+
Sbjct: 263 AYLKPLTALQHLNLSGCWNLTDAGLVHLTPLVGLQHLDLSYCENLTDAGLAHLTPLTALQ 322
Query: 184 SLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQ-L 240
L +S C +TD+G+A+L L L L+L C +T A L L+ L +L +L L C+ L
Sbjct: 323 HLGLSCCENLTDAGLAHLALLTTLQHLDLSCCYNLTDASLSHLTPLTALQHLYLIGCENL 382
Query: 241 SDDGCEKFSKIGSLKVLNLG--FNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT 297
+D G + + +L+ L+L FN +TD L HL LT L+ LNL C + D GL +LT
Sbjct: 383 TDAGLAHLTPLTALQHLDLSCCFN-LTDAGLSHLTPLTGLQHLNLSRCYKLTDAGLAHLT 441
Query: 298 GLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNL 355
L L+ L LS+ + +GL HL+ LT L+ ++L + ++D L L L++L+ L+L
Sbjct: 442 TLVALQHLNLSECRHLTDAGLAHLTPLTALQHLDLKYCINLTDAGLAHLTPLTALQHLDL 501
Query: 356 DA-RQITDTGLAALTSL 371
R++TD GL +L
Sbjct: 502 SRCRRLTDDGLDRFKTL 518
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 105/298 (35%), Positives = 157/298 (52%), Gaps = 11/298 (3%)
Query: 20 LTEVSLEAFRDCA-LQDLCLGQYPGVNDKWM-DVIASQGSSLLSVDLSG-SDVTDSGLIH 76
LT L A +DC ++ L + GV D + ++ +G L +DLS ++TD+GL +
Sbjct: 207 LTNAHLLALKDCKNIEVLYFKKCRGVTDAGLAHLVPLKG--LQHLDLSYCENLTDAGLAY 264
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
LK + LQ L+ + C ++D GL HL L L L +T G+ L L L
Sbjct: 265 LKPLTALQHLNLSGCWNLTDAGLVHLTPLVGLQHLDLSYCENLTDAGLAHLTPLTALQHL 324
Query: 137 DLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ-ISCSKVTD 194
L C + GL +L L L+ L++ C +TD+ + L+ LT L+ L I C +TD
Sbjct: 325 GLSCCENLTDAGLAHLALLTTLQHLDLSCCYNLTDASLSHLTPLTALQHLYLIGCENLTD 384
Query: 195 SGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIG 252
+G+A+L L L L+L C +T A L L+ L L +LNL+RC +L+D G + +
Sbjct: 385 AGLAHLTPLTALQHLDLSCCFNLTDAGLSHLTPLTGLQHLNLSRCYKLTDAGLAHLTTLV 444
Query: 253 SLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELS 308
+L+ LNL +TD L HL LT L+ L+L C + D GL +LT L L+ L+LS
Sbjct: 445 ALQHLNLSECRHLTDAGLAHLTPLTALQHLDLKYCINLTDAGLAHLTPLTALQHLDLS 502
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 87/244 (35%), Positives = 134/244 (54%), Gaps = 7/244 (2%)
Query: 57 SSLLSVDLSGS-DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
++L ++LSG ++TD+GL+HL LQ LD ++C ++D GL HL L+ L L
Sbjct: 269 TALQHLNLSGCWNLTDAGLVHLTPLVGLQHLDLSYCENLTDAGLAHLTPLTALQHLGLSC 328
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
+T G+ A L L LDL C + L +L L L+ L + C +TD+ +
Sbjct: 329 CENLTDAGLAHLALLTTLQHLDLSCCYNLTDASLSHLTPLTALQHLYLIGCENLTDAGLA 388
Query: 175 PLSGLTNLKSLQISCS-KVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFY 232
L+ LT L+ L +SC +TD+G+++L L L LNL C +T A L L+ L +L +
Sbjct: 389 HLTPLTALQHLDLSCCFNLTDAGLSHLTPLTGLQHLNLSRCYKLTDAGLAHLTTLVALQH 448
Query: 233 LNLNRC-QLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIG 289
LNL+ C L+D G + + +L+ L+L + +TD L HL LT L+ L+L C +
Sbjct: 449 LNLSECRHLTDAGLAHLTPLTALQHLDLKYCINLTDAGLAHLTPLTALQHLDLSRCRRLT 508
Query: 290 DEGL 293
D+GL
Sbjct: 509 DDGL 512
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 82/148 (55%), Gaps = 4/148 (2%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
++TD+GL HL + LQ LD + C ++D GL HL L+ L L+ R +T G+
Sbjct: 380 ENLTDAGLAHLTPLTALQHLDLSCCFNLTDAGLSHLTPLTGLQHLNLSRCYKLTDAGLAH 439
Query: 127 FAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
L+ L L+L C + GL +L L L+ L++K+C +TD+ + L+ LT L+ L
Sbjct: 440 LTTLVALQHLNLSECRHLTDAGLAHLTPLTALQHLDLKYCINLTDAGLAHLTPLTALQHL 499
Query: 186 QIS-CSKVTDSGIAYLKGLQKLTLLNLE 212
+S C ++TD G+ K L T LNLE
Sbjct: 500 DLSRCRRLTDDGLDRFKTLA--TSLNLE 525
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 39/72 (54%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TD+GL HL + LQ LD +CI ++D GL HL L+ L L R +T G+ F
Sbjct: 457 LTDAGLAHLTPLTALQHLDLKYCINLTDAGLAHLTPLTALQHLDLSRCRRLTDDGLDRFK 516
Query: 129 GLINLVKLDLER 140
L + L++ R
Sbjct: 517 TLATSLNLEIVR 528
>gi|46447554|ref|YP_008919.1| hypothetical protein pc1920 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46401195|emb|CAF24644.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 517
Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 110/318 (34%), Positives = 159/318 (50%), Gaps = 55/318 (17%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TD+ L+ LK C NL+ L C I+D GL HL L+ L
Sbjct: 238 LTDAHLLALKVCKNLKVLHLEACQAITDDGLAHLTPLTALQ------------------- 278
Query: 129 GLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
LDL +C ++ G GL +L L L+ L++ C+ +TD+ + L+ LT L+ L +
Sbjct: 279 ------HLDLSQCRKLTGIGLAHLTPLTALQHLDLSGCDNLTDAGLAHLAPLTALQHLNL 332
Query: 188 S-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDDG 244
S C +TD+G+ +L L L L+L C + A L L L +L YL+L+ C L+D G
Sbjct: 333 SDCENLTDAGLVHLSPLIALQHLDLSYCWRLNYAGLAHLKPLTALQYLDLSHCINLTDAG 392
Query: 245 CEKFSKIGSLKVLNLGFNE-ITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNL 302
+ L+ LNL + E +TD L HL L L+ LNL C + D GL +LT L L
Sbjct: 393 LAHLKPLMRLQYLNLRYCENLTDAGLAHLTPLMALQHLNLSECYHLTDAGLTHLTPLTAL 452
Query: 303 KCLELSDTQ-VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 361
+ L+LS + + +GL HL+ LT L+ ++LS+ + +T
Sbjct: 453 QHLDLSHCRSLTDAGLAHLTSLTVLQYLDLSY-----------------------CKNLT 489
Query: 362 DTGLAALTSLTGLTHLDL 379
D GLA LT LTGL HLDL
Sbjct: 490 DAGLARLTPLTGLQHLDL 507
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 93/248 (37%), Positives = 136/248 (54%), Gaps = 9/248 (3%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGC 214
K+E+LN +TD+ + L NLK L + +C +TD G+A+L L L L+L C
Sbjct: 226 KIEALNFSENAYLTDAHLLALKVCKNLKVLHLEACQAITDDGLAHLTPLTALQHLDLSQC 285
Query: 215 -PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNE-ITDECLVH 271
+T L L+ L +L +L+L+ C L+D G + + +L+ LNL E +TD LVH
Sbjct: 286 RKLTGIGLAHLTPLTALQHLDLSGCDNLTDAGLAHLAPLTALQHLNLSDCENLTDAGLVH 345
Query: 272 LKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESI 329
L L L+ L+L C + GL +L L L+ L+LS + +GL HL L L+ +
Sbjct: 346 LSPLIALQHLDLSYCWRLNYAGLAHLKPLTALQYLDLSHCINLTDAGLAHLKPLMRLQYL 405
Query: 330 NLSF-TGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGAR-ITD 386
NL + ++D L L L +L+ LNL + +TD GL LT LT L HLDL R +TD
Sbjct: 406 NLRYCENLTDAGLAHLTPLMALQHLNLSECYHLTDAGLTHLTPLTALQHLDLSHCRSLTD 465
Query: 387 SGAAYLRS 394
+G A+L S
Sbjct: 466 AGLAHLTS 473
Score = 107 bits (268), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 95/283 (33%), Positives = 147/283 (51%), Gaps = 11/283 (3%)
Query: 11 FNELVYSRCLTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SD 68
F+E Y LT+ L A + C L+ L L + D + + + ++L +DLS
Sbjct: 232 FSENAY---LTDAHLLALKVCKNLKVLHLEACQAITDDGLAHL-TPLTALQHLDLSQCRK 287
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+T GL HL + LQ LD + C ++D GL HL L+ L L+ +T G+ +
Sbjct: 288 LTGIGLAHLTPLTALQHLDLSGCDNLTDAGLAHLAPLTALQHLNLSDCENLTDAGLVHLS 347
Query: 129 GLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
LI L LDL C R+ + GL +LK L L+ L++ C +TD+ + L L L+ L +
Sbjct: 348 PLIALQHLDLSYCWRLNYAGLAHLKPLTALQYLDLSHCINLTDAGLAHLKPLMRLQYLNL 407
Query: 188 S-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQ-LSDDG 244
C +TD+G+A+L L L LNL C +T A L L+ L +L +L+L+ C+ L+D G
Sbjct: 408 RYCENLTDAGLAHLTPLMALQHLNLSECYHLTDAGLTHLTPLTALQHLDLSHCRSLTDAG 467
Query: 245 CEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC 286
+ + L+ L+L + +TD L L LT L+ L+L C
Sbjct: 468 LAHLTSLTVLQYLDLSYCKNLTDAGLARLTPLTGLQHLDLSRC 510
>gi|348688896|gb|EGZ28710.1| hypothetical protein PHYSODRAFT_322345 [Phytophthora sojae]
Length = 683
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 115/335 (34%), Positives = 179/335 (53%), Gaps = 10/335 (2%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
++TD G+ L ++L SL+ + C Q++D G+ L L NL L F +T G+KA
Sbjct: 292 NLTDDGISALAGVTSLTSLNLSNCSQLTDVGISSLGALVNLRHLEFANVGEVTDNGLKAL 351
Query: 128 AGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
A L++L+ LD+ C I G L L S N+ +C+ I D+ + + LT ++ L
Sbjct: 352 APLVDLITLDIAGCYNITDAGTSVLANFPNLSSCNLWYCSEIGDTTFEHMESLTKMRFLN 411
Query: 187 -ISCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQ-LSDD 243
+ C KVTD G+ + L+ LT L++ C VT L+ L L L L L C + DD
Sbjct: 412 FMKCGKVTDKGLRSISKLRNLTSLDMVSCFNVTDDGLNELVGLHRLKSLYLGGCSGIRDD 471
Query: 244 GCEKFSKIGSLKVLNLG-FNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCN 301
G S++ SL +L+L ++ ++ L+ L L NL +LNL C I DEG+ L GL
Sbjct: 472 GIAALSQLKSLVILDLSNCRQVGNKALLGLGELHNLTNLNLMRCNRIDDEGIAYLAGLKR 531
Query: 302 LKCLELSDTQ-VGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-R 358
LK L LS+ + + + ++ +T LESI L + ++D + LA L+ L+S++L +
Sbjct: 532 LKTLNLSNCRLLTDAATTTIAQMTELESIVLWYCNKLTDTGVMNLASLTKLQSIDLASCS 591
Query: 359 QITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYL 392
++TD L+ S+ LT LDL +TD G A L
Sbjct: 592 KLTDACLSTFPSIPKLTSLDLGNCCLLTDEGMATL 626
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 119/352 (33%), Positives = 183/352 (51%), Gaps = 21/352 (5%)
Query: 57 SSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
+SL S++LS S +TD G+ L NL+ L+F +++D GL+ L L +L +L
Sbjct: 305 TSLTSLNLSNCSQLTDVGISSLGALVNLRHLEFANVGEVTDNGLKALAPLVDLITLDIAG 364
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
IT G A NL +L C+ I +++ L K+ LN C +TD ++
Sbjct: 365 CYNITDAGTSVLANFPNLSSCNLWYCSEIGDTTFEHMESLTKMRFLNFMKCGKVTDKGLR 424
Query: 175 PLSGLTNLKSL-QISCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFY 232
+S L NL SL +SC VTD G+ L GL +L L L GC + + +LS L SL
Sbjct: 425 SISKLRNLTSLDMVSCFNVTDDGLNELVGLHRLKSLYLGGCSGIRDDGIAALSQLKSLVI 484
Query: 233 LNLNRC-QLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCG-IG 289
L+L+ C Q+ + ++ +L LNL N I DE + +L GL L++LNL +C +
Sbjct: 485 LDLSNCRQVGNKALLGLGELHNLTNLNLMRCNRIDDEGIAYLAGLKRLKTLNLSNCRLLT 544
Query: 290 DEGLVNLTGLCNLK------CLELSDTQVGSSGLRHLSGLTNLESINL-SFTGISDGSLR 342
D + + L+ C +L+DT G+ +L+ LT L+SI+L S + ++D L
Sbjct: 545 DAATTTIAQMTELESIVLWYCNKLTDT-----GVMNLASLTKLQSIDLASCSKLTDACLS 599
Query: 343 KLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYL 392
+ L SL+L + +TD G+A L +T LT L+L ITD+G A+L
Sbjct: 600 TFPSIPKLTSLDLGNCCLLTDEGMATLGKVTSLTSLNLSECGEITDAGLAHL 651
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 92/248 (37%), Positives = 127/248 (51%), Gaps = 30/248 (12%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSL-----SFRRNNAITA-- 121
VTD GL + NL SLD C ++D GL L GL L SL S R++ I A
Sbjct: 418 VTDKGLRSISKLRNLTSLDMVSCFNVTDDGLNELVGLHRLKSLYLGGCSGIRDDGIAALS 477
Query: 122 ---------------QGMKAFAGL---INLVKLDLERCTRIHG-GLVNLKGLMKLESLNI 162
G KA GL NL L+L RC RI G+ L GL +L++LN+
Sbjct: 478 QLKSLVILDLSNCRQVGNKALLGLGELHNLTNLNLMRCNRIDDEGIAYLAGLKRLKTLNL 537
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAAC 220
C +TD+ ++ +T L+S+ + C+K+TD+G+ L L KL ++L C +T AC
Sbjct: 538 SNCRLLTDAATTTIAQMTELESIVLWYCNKLTDTGVMNLASLTKLQSIDLASCSKLTDAC 597
Query: 221 LDSLSALGSLFYLNL-NRCQLSDDGCEKFSKIGSLKVLNLG-FNEITDECLVHLKGLTNL 278
L + ++ L L+L N C L+D+G K+ SL LNL EITD L HL L NL
Sbjct: 598 LSTFPSIPKLTSLDLGNCCLLTDEGMATLGKVTSLTSLNLSECGEITDAGLAHLAALVNL 657
Query: 279 ESLNLDSC 286
++NL C
Sbjct: 658 TNINLWYC 665
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 86/274 (31%), Positives = 145/274 (52%), Gaps = 7/274 (2%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
S++ D+ H++ + ++ L+F C +++D GL + L NLTSL +T G+
Sbjct: 391 SEIGDTTFEHMESLTKMRFLNFMKCGKVTDKGLRSISKLRNLTSLDMVSCFNVTDDGLNE 450
Query: 127 FAGLINLVKLDLERCTRIH-GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
GL L L L C+ I G+ L L L L++ C + + + L L NL +L
Sbjct: 451 LVGLHRLKSLYLGGCSGIRDDGIAALSQLKSLVILDLSNCRQVGNKALLGLGELHNLTNL 510
Query: 186 Q-ISCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSD 242
+ C+++ D GIAYL GL++L LNL C +T A +++ + L + L C +L+D
Sbjct: 511 NLMRCNRIDDEGIAYLAGLKRLKTLNLSNCRLLTDAATTTIAQMTELESIVLWYCNKLTD 570
Query: 243 DGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLC 300
G + + L+ ++L +++TD CL + L SL+L +C + DEG+ L +
Sbjct: 571 TGVMNLASLTKLQSIDLASCSKLTDACLSTFPSIPKLTSLDLGNCCLLTDEGMATLGKVT 630
Query: 301 NLKCLELSDT-QVGSSGLRHLSGLTNLESINLSF 333
+L L LS+ ++ +GL HL+ L NL +INL +
Sbjct: 631 SLTSLNLSECGEITDAGLAHLAALVNLTNINLWY 664
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 95/317 (29%), Positives = 155/317 (48%), Gaps = 14/317 (4%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE- 139
NL+ ++ C ++D +E L + + S++ + +T +G+ A ++ L
Sbjct: 175 PNLKEVNLTGCSNLTDESVEQLAQIPRMESIALKGCYQVTDKGIIALTESLSSSLTSLNL 234
Query: 140 -RCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK---VT 193
C + V+ L KL L+++ C+ + D ++ L+ L +L +L + + +T
Sbjct: 235 GYCKVVSDEAVSAIAANLPKLNYLSLRGCSQVGDIGIRELARLKHLTTLNLWYANQGNLT 294
Query: 194 DSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNL-NRCQLSDDGCEKFSKI 251
D GI+ L G+ LT LNL C +T + SL AL +L +L N +++D+G + + +
Sbjct: 295 DDGISALAGVTSLTSLNLSNCSQLTDVGISSLGALVNLRHLEFANVGEVTDNGLKALAPL 354
Query: 252 GSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSD 309
L L++ G ITD L NL S NL C IGD ++ L ++ L
Sbjct: 355 VDLITLDIAGCYNITDAGTSVLANFPNLSSCNLWYCSEIGDTTFEHMESLTKMRFLNFMK 414
Query: 310 T-QVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLA 366
+V GLR +S L NL S+++ S ++D L +L GL LKSL L I D G+A
Sbjct: 415 CGKVTDKGLRSISKLRNLTSLDMVSCFNVTDDGLNELVGLHRLKSLYLGGCSGIRDDGIA 474
Query: 367 ALTSLTGLTHLDLFGAR 383
AL+ L L LDL R
Sbjct: 475 ALSQLKSLVILDLSNCR 491
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 57 SSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
+ L S+DL+ S +TD+ L L SLD C ++D G+ L +++LTSL+
Sbjct: 580 TKLQSIDLASCSKLTDACLSTFPSIPKLTSLDLGNCCLLTDEGMATLGKVTSLTSLNLSE 639
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRI 144
IT G+ A L+NL ++L CT++
Sbjct: 640 CGEITDAGLAHLAALVNLTNINLWYCTKV 668
>gi|406835528|ref|ZP_11095122.1| hypothetical protein SpalD1_27934 [Schlesneria paludicola DSM
18645]
Length = 590
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 123/374 (32%), Positives = 189/374 (50%), Gaps = 13/374 (3%)
Query: 25 LEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQ 84
L+ F D L DL L P + D+ + +A +SL++++LS + +TD GL HLK +NL+
Sbjct: 71 LKPFSD--LSDLDLHAIP-ILDRDLKELADL-TSLVNLNLSDTRITDRGLFHLKRLTNLE 126
Query: 85 SLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI 144
++ I+D G++ L L L+ + IT +G++ + NL L L+
Sbjct: 127 TVWLQNT-SITDAGIKELASFERLAELNLS-DTRITDRGLRELSDFQNLTTLWLQNVEMT 184
Query: 145 HGGLVNLKGLMKLESLNIKWCN-----CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAY 199
GL LK L + +L++ N ITD ++ LS L L+ L ++ + DSG+
Sbjct: 185 DDGLQALKRLKTITTLDLSNLNGLNTIRITDEGLEQLSDLPELRHLYLANIPIADSGLTS 244
Query: 200 LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 259
L+ L+ LT+L+L G +T L+ L L L L + Q+SD G + +L L +
Sbjct: 245 LRRLKHLTVLDLRGTQITDEGLNELRGLHELETFKLTKTQISDAGLTALKGLKNLTTLLI 304
Query: 260 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 319
G N+IT L L L L++L+L + D L L+ + L L LSDT + GLR
Sbjct: 305 GSNQITGTGLQELTNLDQLKTLDLSDTQVTDVELNRLSSIRTLTDLRLSDTPITDVGLRS 364
Query: 320 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
L L L + L T I+D S +L L L L+L ITDTGL L L LT L+L
Sbjct: 365 LRELKRLRRLTLGGTQITDIS--ELNHLRDLTHLDLRVTPITDTGLHGLGDLKHLTSLNL 422
Query: 380 FGARITDSGAAYLR 393
++TD+ + L+
Sbjct: 423 DATQVTDASLSELK 436
Score = 127 bits (319), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 103/309 (33%), Positives = 155/309 (50%), Gaps = 12/309 (3%)
Query: 88 FNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGG 147
F + S+ L L+ S+L+ L I + +K A L +LV L+L G
Sbjct: 57 FEEAHKFSEKHLHLLKPFSDLSDLDLH-AIPILDRDLKELADLTSLVNLNLSDTRITDRG 115
Query: 148 LVNLKGLMKLESLNIKWCN--CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK 205
L +LK L LE++ W ITD+ +K L+ L L +S +++TD G+ L Q
Sbjct: 116 LFHLKRLTNLETV---WLQNTSITDAGIKELASFERLAELNLSDTRITDRGLRELSDFQN 172
Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNL------NRCQLSDDGCEKFSKIGSLKVLNL 259
LT L L+ +T L +L L ++ L+L N +++D+G E+ S + L+ L L
Sbjct: 173 LTTLWLQNVEMTDDGLQALKRLKTITTLDLSNLNGLNTIRITDEGLEQLSDLPELRHLYL 232
Query: 260 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 319
I D L L+ L +L L+L I DEGL L GL L+ +L+ TQ+ +GL
Sbjct: 233 ANIPIADSGLTSLRRLKHLTVLDLRGTQITDEGLNELRGLHELETFKLTKTQISDAGLTA 292
Query: 320 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
L GL NL ++ + I+ L++L L LK+L+L Q+TD L L+S+ LT L L
Sbjct: 293 LKGLKNLTTLLIGSNQITGTGLQELTNLDQLKTLDLSDTQVTDVELNRLSSIRTLTDLRL 352
Query: 380 FGARITDSG 388
ITD G
Sbjct: 353 SDTPITDVG 361
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 116/366 (31%), Positives = 167/366 (45%), Gaps = 49/366 (13%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TD GL L D L+ L + I I+D GL LR L +LT L R IT +G+
Sbjct: 213 ITDEGLEQLSDLPELRHL-YLANIPIADSGLTSLRRLKHLTVLDLR-GTQITDEGLNELR 270
Query: 129 GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
GL L L + GL LKGL L +L I N IT + ++ L+ L LK+L +S
Sbjct: 271 GLHELETFKLTKTQISDAGLTALKGLKNLTTLLI-GSNQITGTGLQELTNLDQLKTLDLS 329
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVT----------------------AACLDSLSA 226
++VTD + L ++ LT L L P+T + L+
Sbjct: 330 DTQVTDVELNRLSSIRTLTDLRLSDTPITDVGLRSLRELKRLRRLTLGGTQITDISELNH 389
Query: 227 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD------ECLVHLKGLT---- 276
L L +L+L ++D G + L LNL ++TD +CLVHLK L+
Sbjct: 390 LRDLTHLDLRVTPITDTGLHGLGDLKHLTSLNLDATQVTDASLSELKCLVHLKELSLSRT 449
Query: 277 -----------NLESLNL---DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 322
LE L + D C I DEGL + L +LK L +S T+V GL L
Sbjct: 450 AISGLGFKSLERLEQLTVLRCDRCLIADEGLREICTLKSLKTLVISGTRVTDDGLAELHQ 509
Query: 323 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 382
L L+ + + ++D + +L L L++L + +ITDT L+ + L LT L +
Sbjct: 510 LEGLQELRIENNALTDAGMSELMVLGKLRTLGISHNKITDTSLSDIKRLKNLTMLRIRNT 569
Query: 383 RITDSG 388
ITDSG
Sbjct: 570 EITDSG 575
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 79/152 (51%), Gaps = 3/152 (1%)
Query: 245 CEKFSKIGSLKVLNLGFNE---ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN 301
E+ ++ V+ + F E +++ L LK ++L L+L + I D L L L +
Sbjct: 41 IERDAEAPDHPVIGIAFEEAHKFSEKHLHLLKPFSDLSDLDLHAIPILDRDLKELADLTS 100
Query: 302 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 361
L L LSDT++ GL HL LTNLE++ L T I+D +++LA L LNL +IT
Sbjct: 101 LVNLNLSDTRITDRGLFHLKRLTNLETVWLQNTSITDAGIKELASFERLAELNLSDTRIT 160
Query: 362 DTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
D GL L+ LT L L +TD G L+
Sbjct: 161 DRGLRELSDFQNLTTLWLQNVEMTDDGLQALK 192
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 93/190 (48%), Gaps = 3/190 (1%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L +DL + +TD+GL L D +L SL+ + Q++D L L+ L +L LS R A
Sbjct: 393 LTHLDLRVTPITDTGLHGLGDLKHLTSLNLD-ATQVTDASLSELKCLVHLKELSLSRT-A 450
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
I+ G K+ L L L +RC GL + L L++L I +TD + L
Sbjct: 451 ISGLGFKSLERLEQLTVLRCDRCLIADEGLREICTLKSLKTLVISGTR-VTDDGLAELHQ 509
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
L L+ L+I + +TD+G++ L L KL L + +T L + L +L L +
Sbjct: 510 LEGLQELRIENNALTDAGMSELMVLGKLRTLGISHNKITDTSLSDIKRLKNLTMLRIRNT 569
Query: 239 QLSDDGCEKF 248
+++D G F
Sbjct: 570 EITDSGLNGF 579
Score = 41.2 bits (95), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 41/75 (54%)
Query: 320 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
L ++L ++L I D L++LA L+SL +LNL +ITD GL L LT L + L
Sbjct: 71 LKPFSDLSDLDLHAIPILDRDLKELADLTSLVNLNLSDTRITDRGLFHLKRLTNLETVWL 130
Query: 380 FGARITDSGAAYLRS 394
ITD+G L S
Sbjct: 131 QNTSITDAGIKELAS 145
>gi|406835014|ref|ZP_11094608.1| hypothetical protein SpalD1_25335 [Schlesneria paludicola DSM
18645]
Length = 497
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 118/372 (31%), Positives = 188/372 (50%), Gaps = 7/372 (1%)
Query: 26 EAFRDCALQDLCLGQYPGVNDKWMDVIA--SQGSSLLSVDLSGSDVTDSGLIHLKDCSNL 83
EA + + + N+K ++++ S ++L+ + S +T + L L NL
Sbjct: 70 EALPGRPVTTIYFDGHGKFNEKHLNLLMPFSHLTTLVFSNFKSSQITSARLSDLSGLKNL 129
Query: 84 QSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTR 143
SL F +IS+ G+ L+ L NLT+LS + +T G++ + L L L +
Sbjct: 130 TSLHFE-NTEISNEGIHELQELKNLTTLSLHTTH-VTDAGLRNLREVSKLTTLSLSGNSI 187
Query: 144 IHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGL 203
G L L L SL+++ N I D + +S L NLK+L + +TDS + L+ +
Sbjct: 188 SDDGFKELGELKHLSSLSLRLEN-IDDVQLDEISKLENLKTLSLHVPSITDSELKQLRTV 246
Query: 204 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL-GFN 262
+ LT L L +T A L L L +L L+L+ Q++D G ++ ++ +L L L G
Sbjct: 247 KNLTKLFLINSKITDAGLKPLLDLKNLTDLDLSSTQITDAGLKEIGQLENLTSLYLEGCG 306
Query: 263 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 322
ITD L+ + NL+ L L CGI D G+ L L +L+ L+LS T + G++ + G
Sbjct: 307 GITDVGFRELRNIKNLKRLALARCGITDLGMKGLGQLKSLELLDLSRTPITDHGIQEIGG 366
Query: 323 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 382
LTNL ++ L + I+D LR++ GL +LK L L + ITD G+ L + L L
Sbjct: 367 LTNLSTLWLLGSNITDLGLREINGLENLKELYLKSAFITDAGMKELGKFHNMNMLHLIQC 426
Query: 383 R-ITDSGAAYLR 393
ITD+G LR
Sbjct: 427 DGITDAGLKELR 438
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 114/342 (33%), Positives = 177/342 (51%), Gaps = 10/342 (2%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
+L S+ +++++ G+ L++ NL +L + ++D GL +LR +S LT+LS N
Sbjct: 128 NLTSLHFENTEISNEGIHELQELKNLTTLSLH-TTHVTDAGLRNLREVSKLTTLSLS-GN 185
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNC--ITDSDMKP 175
+I+ G K L +L L L R I V L + KLE+L + ITDS++K
Sbjct: 186 SISDDGFKELGELKHLSSLSL-RLENIDD--VQLDEISKLENLKTLSLHVPSITDSELKQ 242
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
L + NL L + SK+TD+G+ L L+ LT L+L +T A L + L +L L L
Sbjct: 243 LRTVKNLTKLFLINSKITDAGLKPLLDLKNLTDLDLSSTQITDAGLKEIGQLENLTSLYL 302
Query: 236 NRCQ-LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
C ++D G + I +LK L L ITD + L L +LE L+L I D G+
Sbjct: 303 EGCGGITDVGFRELRNIKNLKRLALARCGITDLGMKGLGQLKSLELLDLSRTPITDHGIQ 362
Query: 295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 354
+ GL NL L L + + GLR ++GL NL+ + L I+D +++L ++ L+
Sbjct: 363 EIGGLTNLSTLWLLGSNITDLGLREINGLENLKELYLKSAFITDAGMKELGKFHNMNMLH 422
Query: 355 L-DARQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRS 394
L ITD GL L L L+ +L+G R +TD+G L+
Sbjct: 423 LIQCDGITDAGLKELRDLKKLSMFELYGCRNVTDAGIDELKE 464
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 114/344 (33%), Positives = 171/344 (49%), Gaps = 36/344 (10%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
+L ++ L + VTD+GL +L++ S L +L + ISD G + L L +L+SLS R N
Sbjct: 152 NLTTLSLHTTHVTDAGLRNLREVSKLTTLSLSGN-SISDDGFKELGELKHLSSLSLRLEN 210
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL---KGLMKLESLNIKWCNCITDSDMK 174
Q + + L NL L L + L L K L KL +N K ITD+ +K
Sbjct: 211 IDDVQ-LDEISKLENLKTLSLHVPSITDSELKQLRTVKNLTKLFLINSK----ITDAGLK 265
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYL 233
PL L NL L +S +++TD+G+ + L+ LT L LEGC +T L + +L L
Sbjct: 266 PLLDLKNLTDLDLSSTQITDAGLKEIGQLENLTSLYLEGCGGITDVGFRELRNIKNLKRL 325
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
L RC ++D G + ++ SL++L+L ITD + + GLTNL +L L I D GL
Sbjct: 326 ALARCGITDLGMKGLGQLKSLELLDLSRTPITDHGIQEIGGLTNLSTLWLLGSNITDLGL 385
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKL-------- 344
+ GL NLK L L + +G++ L N+ ++L GI+D L++L
Sbjct: 386 REINGLENLKELYLKSAFITDAGMKELGKFHNMNMLHLIQCDGITDAGLKELRDLKKLSM 445
Query: 345 -----------AGLSSLKS------LNLDARQITDTGLAALTSL 371
AG+ LK LN+ A Q+T +G+ L L
Sbjct: 446 FELYGCRNVTDAGIDELKEHKQLTILNVGATQVTVSGVNKLKEL 489
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 97/336 (28%), Positives = 143/336 (42%), Gaps = 52/336 (15%)
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
S+ L ++ D L + NL++L + I+D L+ LR + NLT L F N+ IT
Sbjct: 203 SLSLRLENIDDVQLDEISKLENLKTLSLHVP-SITDSELKQLRTVKNLTKL-FLINSKIT 260
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
G+K L NL LDL ITD+ +K + L
Sbjct: 261 DAGLKPLLDLKNLTDLDLS-------------------------STQITDAGLKEIGQLE 295
Query: 181 NLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 239
NL SL + C +TD G L+ ++ L L L C +T + L L SL L+L+R
Sbjct: 296 NLTSLYLEGCGGITDVGFRELRNIKNLKRLALARCGITDLGMKGLGQLKSLELLDLSRTP 355
Query: 240 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 299
++D G ++ + +L L L + ITD L + GL NL+ L L S I D G+ L
Sbjct: 356 ITDHGIQEIGGLTNLSTLWLLGSNITDLGLREINGLENLKELYLKSAFITDAGMKELGKF 415
Query: 300 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA-R 358
N+ L L + GI+D L++L L L L R
Sbjct: 416 HNMNMLHL-----------------------IQCDGITDAGLKELRDLKKLSMFELYGCR 452
Query: 359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRS 394
+TD G+ L LT L++ ++T SG L+
Sbjct: 453 NVTDAGIDELKEHKQLTILNVGATQVTVSGVNKLKE 488
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 74/221 (33%), Positives = 110/221 (49%), Gaps = 1/221 (0%)
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
P S LT L S++T + ++ L GL+ LT L+ E ++ + L L +L L+
Sbjct: 98 PFSHLTTLVFSNFKSSQITSARLSDLSGLKNLTSLHFENTEISNEGIHELQELKNLTTLS 157
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
L+ ++D G ++ L L+L N I+D+ L L +L SL+L I D L
Sbjct: 158 LHTTHVTDAGLRNLREVSKLTTLSLSGNSISDDGFKELGELKHLSSLSLRLENIDDVQLD 217
Query: 295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 354
++ L NLK L L + S L+ L + NL + L + I+D L+ L L +L L+
Sbjct: 218 EISKLENLKTLSLHVPSITDSELKQLRTVKNLTKLFLINSKITDAGLKPLLDLKNLTDLD 277
Query: 355 LDARQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRS 394
L + QITD GL + L LT L L G ITD G LR+
Sbjct: 278 LSSTQITDAGLKEIGQLENLTSLYLEGCGGITDVGFRELRN 318
>gi|296124076|ref|YP_003631854.1| ribonuclease inhibitor [Planctomyces limnophilus DSM 3776]
gi|296016416|gb|ADG69655.1| Leucine-rich repeat, ribonuclease inhibitor subtype [Planctomyces
limnophilus DSM 3776]
Length = 474
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 94/295 (31%), Positives = 157/295 (53%), Gaps = 2/295 (0%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
+I+D G+ L+ L+NL L N +T G + A NL L L R + L +L
Sbjct: 140 KITDKGVLLLKPLTNLVVLGLE-NTQLTDTGAEVLASFPNLEVLYLRRTNILDPALAHLS 198
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
L KL +L++++ N +TD MK L+GL+ L+ L++ ++VTD+ + + L L LN+
Sbjct: 199 KLAKLRALDLRFTN-VTDEGMKSLAGLSQLRDLRLQATRVTDASLPLIAKLPNLQKLNVW 257
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
G T A L L+ +L L L+ +L+ +G K + +L+ L++ I ++ L +
Sbjct: 258 GENFTDAGLSQLADTKTLRILELDDTRLTSEGLIKLGGLTNLEELHVRRTRIKNDGLAVV 317
Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 332
K + + L L D GL ++GL NL L+L++ G G+++L+GLT+LE ++L
Sbjct: 318 KNMPKMRRLLLRDTLCTDPGLEAVSGLKNLVELDLTEGIFGDDGVKNLAGLTSLEDLSLW 377
Query: 333 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 387
T SD + + L LK+LNL+ +ITD + LT L+L +TD+
Sbjct: 378 ATTTSDAGIESIRDLKKLKALNLEQTRITDAAAKTIAGFGELTELNLSQTEVTDA 432
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 94/306 (30%), Positives = 151/306 (49%), Gaps = 3/306 (0%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+ L + L G +TD G++ LK +NL L Q++D G E L NL L RR
Sbjct: 129 THLTELRLEGPKITDKGVLLLKPLTNLVVLGLENT-QLTDTGAEVLASFPNLEVLYLRRT 187
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N I + + L L LDL G+ +L GL +L L ++ +TD+ + +
Sbjct: 188 N-ILDPALAHLSKLAKLRALDLRFTNVTDEGMKSLAGLSQLRDLRLQ-ATRVTDASLPLI 245
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ L NL+ L + TD+G++ L + L +L L+ +T+ L L L +L L++
Sbjct: 246 AKLPNLQKLNVWGENFTDAGLSQLADTKTLRILELDDTRLTSEGLIKLGGLTNLEELHVR 305
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
R ++ +DG + ++ L L TD L + GL NL L+L GD+G+ NL
Sbjct: 306 RTRIKNDGLAVVKNMPKMRRLLLRDTLCTDPGLEAVSGLKNLVELDLTEGIFGDDGVKNL 365
Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
GL +L+ L L T +G+ + L L+++NL T I+D + + +AG L LNL
Sbjct: 366 AGLTSLEDLSLWATTTSDAGIESIRDLKKLKALNLEQTRITDAAAKTIAGFGELTELNLS 425
Query: 357 ARQITD 362
++TD
Sbjct: 426 QTEVTD 431
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 78/249 (31%), Positives = 115/249 (46%), Gaps = 24/249 (9%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
I D D+ ++ LT+L L++ K+TD G+ LK L L +L LE +T + L++
Sbjct: 117 IGDDDLALVAKLTHLTELRLEGPKITDKGVLLLKPLTNLVVLGLENTQLTDTGAEVLASF 176
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
+L L L R + D SK+ L+ L+L F +TDE + L GL+ L L L +
Sbjct: 177 PNLEVLYLRRTNILDPALAHLSKLAKLRALDLRFTNVTDEGMKSLAGLSQLRDLRLQATR 236
Query: 288 IGDEGLVNLTGLCNL------------------------KCLELSDTQVGSSGLRHLSGL 323
+ D L + L NL + LEL DT++ S GL L GL
Sbjct: 237 VTDASLPLIAKLPNLQKLNVWGENFTDAGLSQLADTKTLRILELDDTRLTSEGLIKLGGL 296
Query: 324 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 383
TNLE +++ T I + L + + ++ L L TD GL A++ L L LDL
Sbjct: 297 TNLEELHVRRTRIKNDGLAVVKNMPKMRRLLLRDTLCTDPGLEAVSGLKNLVELDLTEGI 356
Query: 384 ITDSGAAYL 392
D G L
Sbjct: 357 FGDDGVKNL 365
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/227 (29%), Positives = 109/227 (48%), Gaps = 4/227 (1%)
Query: 40 QYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGL 99
++ V D+ M +A S L + L + VTD+ L + NLQ L+ + +D GL
Sbjct: 209 RFTNVTDEGMKSLAGL-SQLRDLRLQATRVTDASLPLIAKLPNLQKLNV-WGENFTDAGL 266
Query: 100 EHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 159
L L L + +T++G+ GL NL +L + R + GL +K + K+
Sbjct: 267 SQLADTKTLRILELD-DTRLTSEGLIKLGGLTNLEELHVRRTRIKNDGLAVVKNMPKMRR 325
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
L ++ C TD ++ +SGL NL L ++ D G+ L GL L L+L + A
Sbjct: 326 LLLRDTLC-TDPGLEAVSGLKNLVELDLTEGIFGDDGVKNLAGLTSLEDLSLWATTTSDA 384
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 266
++S+ L L LNL + +++D + + G L LNL E+TD
Sbjct: 385 GIESIRDLKKLKALNLEQTRITDAAAKTIAGFGELTELNLSQTEVTD 431
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 78/246 (31%), Positives = 122/246 (49%), Gaps = 31/246 (12%)
Query: 20 LTEVSLEAFRDCA----LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLI 75
T V+ E + A L+DL L Q V D + +IA + +L +++ G + TD+GL
Sbjct: 210 FTNVTDEGMKSLAGLSQLRDLRL-QATRVTDASLPLIA-KLPNLQKLNVWGENFTDAGLS 267
Query: 76 HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR----NNAI------------ 119
L D L+ L+ + +++ GL L GL+NL L RR N+ +
Sbjct: 268 QLADTKTLRILELDDT-RLTSEGLIKLGGLTNLEELHVRRTRIKNDGLAVVKNMPKMRRL 326
Query: 120 -------TAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 172
T G++A +GL NLV+LDL G+ NL GL LE L++ W +D+
Sbjct: 327 LLRDTLCTDPGLEAVSGLKNLVELDLTEGIFGDDGVKNLAGLTSLEDLSL-WATTTSDAG 385
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
++ + L LK+L + +++TD+ + G +LT LNL VT A L L+AL L
Sbjct: 386 IESIRDLKKLKALNLEQTRITDAAAKTIAGFGELTELNLSQTEVTDATLKELAALKKLKK 445
Query: 233 LNLNRC 238
L++N C
Sbjct: 446 LSVNNC 451
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 78/299 (26%), Positives = 121/299 (40%), Gaps = 52/299 (17%)
Query: 40 QYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGL 99
+ P + DK + ++ ++L+ + L + +TD+G L NL+ L I D L
Sbjct: 137 EGPKITDKGV-LLLKPLTNLVVLGLENTQLTDTGAEVLASFPNLEVLYLRRT-NILDPAL 194
Query: 100 EHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 159
HL L+ L +L R N +T +GMK+ AGL L L L+ L + L L+
Sbjct: 195 AHLSKLAKLRALDLRFTN-VTDEGMKSLAGLSQLRDLRLQATRVTDASLPLIAKLPNLQK 253
Query: 160 LNIKWCNCITDSDMKPLS------------------------GLTNLKSLQISCSKVTDS 195
LN+ W TD+ + L+ GLTNL+ L + +++ +
Sbjct: 254 LNV-WGENFTDAGLSQLADTKTLRILELDDTRLTSEGLIKLGGLTNLEELHVRRTRIKND 312
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC---------- 245
G+A +K + K+ L L T L+++S L +L L+L DDG
Sbjct: 313 GLAVVKNMPKMRRLLLRDTLCTDPGLEAVSGLKNLVELDLTEGIFGDDGVKNLAGLTSLE 372
Query: 246 --------------EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
E + LK LNL ITD + G L LNL + D
Sbjct: 373 DLSLWATTTSDAGIESIRDLKKLKALNLEQTRITDAAAKTIAGFGELTELNLSQTEVTD 431
>gi|149174591|ref|ZP_01853217.1| hypothetical protein PM8797T_09969 [Planctomyces maris DSM 8797]
gi|148846701|gb|EDL61038.1| hypothetical protein PM8797T_09969 [Planctomyces maris DSM 8797]
Length = 346
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 83/221 (37%), Positives = 125/221 (56%), Gaps = 2/221 (0%)
Query: 150 NLKGLMKLESLNI--KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 207
+L + +L+SL I + ITDSDM GL NL++L + + + D+G+ +L+ L+KL
Sbjct: 106 DLAAIAQLKSLKILDFSSSLITDSDMSYFQGLYNLEALILERTSIGDAGLYHLRDLRKLK 165
Query: 208 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 267
+L L VT L L L L YLNL+ ++SD G + +L+ L L +++D
Sbjct: 166 VLRLWETDVTDVGLSYLKDLTELTYLNLSETKISDAGLIHLKGMLNLQTLYLDATQVSDR 225
Query: 268 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 327
L++LK L LE+L+L + D GLV+L+ NLK L L+DTQ+ GL +L L L
Sbjct: 226 GLIYLKELPKLETLDLLDAEVTDAGLVHLSECRNLKKLTLADTQISDQGLVYLGKLKELH 285
Query: 328 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 368
+++ +T SD L L GL SL LN ++ +ITD G L
Sbjct: 286 ELDIRYTNTSDAGLVHLQGLKSLAYLNWESTKITDAGYTRL 326
Score = 127 bits (319), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 84/242 (34%), Positives = 124/242 (51%), Gaps = 8/242 (3%)
Query: 161 NIKWCNCI--------TDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
N+ W + + T++D+ ++ L +LK L S S +TDS ++Y +GL L L LE
Sbjct: 87 NVTWISSVGYGDDYEFTEADLAAIAQLKSLKILDFSSSLITDSDMSYFQGLYNLEALILE 146
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
+ A L L L L L L ++D G + L LNL +I+D L+HL
Sbjct: 147 RTSIGDAGLYHLRDLRKLKVLRLWETDVTDVGLSYLKDLTELTYLNLSETKISDAGLIHL 206
Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 332
KG+ NL++L LD+ + D GL+ L L L+ L+L D +V +GL HLS NL+ + L+
Sbjct: 207 KGMLNLQTLYLDATQVSDRGLIYLKELPKLETLDLLDAEVTDAGLVHLSECRNLKKLTLA 266
Query: 333 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
T ISD L L L L L++ +D GL L L L +L+ +ITD+G L
Sbjct: 267 DTQISDQGLVYLGKLKELHELDIRYTNTSDAGLVHLQGLKSLAYLNWESTKITDAGYTRL 326
Query: 393 RS 394
Sbjct: 327 HE 328
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 86/258 (33%), Positives = 125/258 (48%), Gaps = 30/258 (11%)
Query: 87 DFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG 146
D+ F ++ L + L +L L F ++ IT M F GL NL L LER +
Sbjct: 99 DYEF----TEADLAAIAQLKSLKILDFS-SSLITDSDMSYFQGLYNLEALILERTSIGDA 153
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
GL +L+ L KL+ L + W +TD + L LT L L +S +K++D+G+ +LKG
Sbjct: 154 GLYHLRDLRKLKVLRL-WETDVTDVGLSYLKDLTELTYLNLSETKISDAGLIHLKG---- 208
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 266
+LNL+ L L+ Q+SD G ++ L+ L+L E+TD
Sbjct: 209 -MLNLQT-------------------LYLDATQVSDRGLIYLKELPKLETLDLLDAEVTD 248
Query: 267 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 326
LVHL NL+ L L I D+GLV L L L L++ T +GL HL GL +L
Sbjct: 249 AGLVHLSECRNLKKLTLADTQISDQGLVYLGKLKELHELDIRYTNTSDAGLVHLQGLKSL 308
Query: 327 ESINLSFTGISDGSLRKL 344
+N T I+D +L
Sbjct: 309 AYLNWESTKITDAGYTRL 326
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 78/243 (32%), Positives = 112/243 (46%), Gaps = 27/243 (11%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
+Q SL +D S S +TDS + + + NL++L I D GL HLR L L L
Sbjct: 111 AQLKSLKILDFSSSLITDSDMSYFQGLYNLEALILERT-SIGDAGLYHLRDLRKLKVLRL 169
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
+ +T G+ L L L+L GL++LKG++
Sbjct: 170 WETD-VTDVGLSYLKDLTELTYLNLSETKISDAGLIHLKGML------------------ 210
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
NL++L + ++V+D G+ YLK L KL L+L VT A L LS +L L
Sbjct: 211 -------NLQTLYLDATQVSDRGLIYLKELPKLETLDLLDAEVTDAGLVHLSECRNLKKL 263
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
L Q+SD G K+ L L++ + +D LVHL+GL +L LN +S I D G
Sbjct: 264 TLADTQISDQGLVYLGKLKELHELDIRYTNTSDAGLVHLQGLKSLAYLNWESTKITDAGY 323
Query: 294 VNL 296
L
Sbjct: 324 TRL 326
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 55/112 (49%), Gaps = 9/112 (8%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L ++DL ++VTD+GL+HL +C NL+ L QISD GL +L L L L R N
Sbjct: 236 LETLDLLDAEVTDAGLVHLSECRNLKKLTLA-DTQISDQGLVYLGKLKELHELDIRYTNT 294
Query: 119 ITAQGMKAFAGLINLVKLDLERC-------TRIHGGLVNLKGLMKLESLNIK 163
A G+ GL +L L+ E TR+H L L + ++ K
Sbjct: 295 SDA-GLVHLQGLKSLAYLNWESTKITDAGYTRLHEFLPKLSRTQQFPTIIFK 345
>gi|301118238|ref|XP_002906847.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262108196|gb|EEY66248.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 648
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 130/386 (33%), Positives = 203/386 (52%), Gaps = 18/386 (4%)
Query: 20 LTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIA-SQGSSLLSVDLSGSDV-TDSGLIH 76
LT+ S+E + + L + L V DK + ++ SQ +SL SV+L V +D G+
Sbjct: 153 LTDESVEQLANLSGLTSVALKGCYQVTDKSIKLLTESQSNSLTSVNLGYCKVVSDEGITA 212
Query: 77 L-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN--AITAQGMKAFAGLINL 133
+ + S L L+ C Q+ D G+ L L NL +L+ N A+T G+ A A + +L
Sbjct: 213 IASNLSKLNYLNLRGCSQVGDNGIRALARLKNLQTLNLWYCNQGALTDGGISALAEVTSL 272
Query: 134 VKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSK 191
L+L C+++ G+ +L L+KL L I +TD L+ L NL +L ++ C
Sbjct: 273 TSLNLSNCSQLTDEGISSLSTLVKLRHLEIANVGEVTDQGFLALAPLVNLVTLDVAGCYN 332
Query: 192 VTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFS 249
+TD+G L KL NL C + A + +L + +LN +C +++D G +
Sbjct: 333 ITDAGTEVLVNFPKLASCNLWYCSEIGDATFQHMESLTKMRFLNFMKCGKVTDRGLRSIA 392
Query: 250 KIGSLKVLNLG--FNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLE 306
K+ +L L++ FN +TDE L L L L+SL L C GI DEG+ L+ L +L L+
Sbjct: 393 KLRNLTSLDMVSCFN-VTDEGLNELSKLNRLKSLYLGGCSGIRDEGIAALSHLSSLVILD 451
Query: 307 LSD-TQVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNL-DARQITDT 363
LS+ QVG+ L + L NL ++NL I D + LAGL+ LK+LNL + R +TD
Sbjct: 452 LSNCRQVGNKALLGIGALRNLTNLNLMRCNRIDDDGIAHLAGLTRLKTLNLANCRLLTDR 511
Query: 364 GLAALTSLTGLTHLDL-FGARITDSG 388
+ +TGL L L + ++TD+G
Sbjct: 512 ATKTVAQMTGLESLVLWYCNKLTDAG 537
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 116/361 (32%), Positives = 185/361 (51%), Gaps = 35/361 (9%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TD G+ L + ++L SL+ + C Q++D G+ L L L L +T QG A A
Sbjct: 258 LTDGGISALAEVTSLTSLNLSNCSQLTDEGISSLSTLVKLRHLEIANVGEVTDQGFLALA 317
Query: 129 GLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ- 186
L+NLV LD+ C I G L KL S N+ +C+ I D+ + + LT ++ L
Sbjct: 318 PLVNLVTLDVAGCYNITDAGTEVLVNFPKLASCNLWYCSEIGDATFQHMESLTKMRFLNF 377
Query: 187 ISCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQ-LSDDG 244
+ C KVTD G+ + L+ LT L++ C VT L+ LS L L L L C + D+G
Sbjct: 378 MKCGKVTDRGLRSIAKLRNLTSLDMVSCFNVTDEGLNELSKLNRLKSLYLGGCSGIRDEG 437
Query: 245 CEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNL 302
S + SL +L+L ++ ++ L+ + L NL +LNL C I D+G+ +L GL L
Sbjct: 438 IAALSHLSSLVILDLSNCRQVGNKALLGIGALRNLTNLNLMRCNRIDDDGIAHLAGLTRL 497
Query: 303 KCLELSD--------------------------TQVGSSGLRHLSGLTNLESINL-SFTG 335
K L L++ ++ +G+ +LS LT L+SI+L S +
Sbjct: 498 KTLNLANCRLLTDRATKTVAQMTGLESLVLWYCNKLTDAGILNLSTLTKLQSIDLASCSK 557
Query: 336 ISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLR 393
++D SL + +L SL+L + ++D G+ L+ +T LT L+L ITD+G +L+
Sbjct: 558 LTDASLEAFLNMPNLTSLDLGNCCLLSDEGMLTLSKVTSLTSLNLSECGEITDTGLEHLK 617
Query: 394 S 394
+
Sbjct: 618 T 618
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 107/345 (31%), Positives = 178/345 (51%), Gaps = 34/345 (9%)
Query: 58 SLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+L+++D++G ++TD+G L + L S + +C +I D +H+ L+ + L+F +
Sbjct: 321 NLVTLDVAGCYNITDAGTEVLVNFPKLASCNLWYCSEIGDATFQHMESLTKMRFLNFMKC 380
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+T +G+++ A L NL LD+ C +TD + L
Sbjct: 381 GKVTDRGLRSIAKLRNLTSLDMVSCFN------------------------VTDEGLNEL 416
Query: 177 SGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLN 234
S L LKSL + CS + D GIA L L L +L+L C V L + AL +L LN
Sbjct: 417 SKLNRLKSLYLGGCSGIRDEGIAALSHLSSLVILDLSNCRQVGNKALLGIGALRNLTNLN 476
Query: 235 LNRC-QLSDDGCEKFSKIGSLKVLNLGFNE-ITDECLVHLKGLTNLESLNLDSCG-IGDE 291
L RC ++ DDG + + LK LNL +TD + +T LESL L C + D
Sbjct: 477 LMRCNRIDDDGIAHLAGLTRLKTLNLANCRLLTDRATKTVAQMTGLESLVLWYCNKLTDA 536
Query: 292 GLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSS 349
G++NL+ L L+ ++L+ +++ + L + NL S++L + +SD + L+ ++S
Sbjct: 537 GILNLSTLTKLQSIDLASCSKLTDASLEAFLNMPNLTSLDLGNCCLLSDEGMLTLSKVTS 596
Query: 350 LKSLNL-DARQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYL 392
L SLNL + +ITDTGL L +L L+ ++L + ++T G +L
Sbjct: 597 LTSLNLSECGEITDTGLEHLKTLVNLSSVNLWYCTKVTPVGINFL 641
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 120/354 (33%), Positives = 186/354 (52%), Gaps = 16/354 (4%)
Query: 55 QGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL-RGLSN-LTSL 111
Q L V+L+G S +TD + L + S L S+ C Q++D ++ L SN LTS+
Sbjct: 138 QFPHLKEVNLTGCSSLTDESVEQLANLSGLTSVALKGCYQVTDKSIKLLTESQSNSLTSV 197
Query: 112 SFRRNNAITAQGMKAFA-GLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCN--C 167
+ ++ +G+ A A L L L+L C+++ G+ L L L++LN+ +CN
Sbjct: 198 NLGYCKVVSDEGITAIASNLSKLNYLNLRGCSQVGDNGIRALARLKNLQTLNLWYCNQGA 257
Query: 168 ITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLS 225
+TD + L+ +T+L SL +S CS++TD GI+ L L KL L + VT +L+
Sbjct: 258 LTDGGISALAEVTSLTSLNLSNCSQLTDEGISSLSTLVKLRHLEIANVGEVTDQGFLALA 317
Query: 226 ALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNL 283
L +L L++ C ++D G E L NL + +EI D H++ LT + LN
Sbjct: 318 PLVNLVTLDVAGCYNITDAGTEVLVNFPKLASCNLWYCSEIGDATFQHMESLTKMRFLNF 377
Query: 284 DSCG-IGDEGLVNLTGLCNLKCLEL-SDTQVGSSGLRHLSGLTNLESINL-SFTGISDGS 340
CG + D GL ++ L NL L++ S V GL LS L L+S+ L +GI D
Sbjct: 378 MKCGKVTDRGLRSIAKLRNLTSLDMVSCFNVTDEGLNELSKLNRLKSLYLGGCSGIRDEG 437
Query: 341 LRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGA-RITDSGAAYL 392
+ L+ LSSL L+L + RQ+ + L + +L LT+L+L RI D G A+L
Sbjct: 438 IAALSHLSSLVILDLSNCRQVGNKALLGIGALRNLTNLNLMRCNRIDDDGIAHL 491
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 96/249 (38%), Positives = 137/249 (55%), Gaps = 7/249 (2%)
Query: 44 VNDKWMDVIASQGSSLLSVDL-SGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
V D+ + IA + +L S+D+ S +VTD GL L + L+SL C I D G+ L
Sbjct: 383 VTDRGLRSIA-KLRNLTSLDMVSCFNVTDEGLNELSKLNRLKSLYLGGCSGIRDEGIAAL 441
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLN 161
LS+L L + + + L NL L+L RC RI G+ +L GL +L++LN
Sbjct: 442 SHLSSLVILDLSNCRQVGNKALLGIGALRNLTNLNLMRCNRIDDDGIAHLAGLTRLKTLN 501
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAA 219
+ C +TD K ++ +T L+SL + C+K+TD+GI L L KL ++L C +T A
Sbjct: 502 LANCRLLTDRATKTVAQMTGLESLVLWYCNKLTDAGILNLSTLTKLQSIDLASCSKLTDA 561
Query: 220 CLDSLSALGSLFYLNL-NRCQLSDDGCEKFSKIGSLKVLNLG-FNEITDECLVHLKGLTN 277
L++ + +L L+L N C LSD+G SK+ SL LNL EITD L HLK L N
Sbjct: 562 SLEAFLNMPNLTSLDLGNCCLLSDEGMLTLSKVTSLTSLNLSECGEITDTGLEHLKTLVN 621
Query: 278 LESLNLDSC 286
L S+NL C
Sbjct: 622 LSSVNLWYC 630
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 67/210 (31%), Positives = 111/210 (52%), Gaps = 5/210 (2%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFC 91
L+ L LG G+ D+ + + S SSL+ +DLS V + L+ + NL +L+ C
Sbjct: 422 LKSLYLGGCSGIRDEGIAAL-SHLSSLVILDLSNCRQVGNKALLGIGALRNLTNLNLMRC 480
Query: 92 IQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVN 150
+I D G+ HL GL+ L +L+ +T + K A + L L L C ++ G++N
Sbjct: 481 NRIDDDGIAHLAGLTRLKTLNLANCRLLTDRATKTVAQMTGLESLVLWYCNKLTDAGILN 540
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLL 209
L L KL+S+++ C+ +TD+ ++ + NL SL + +C ++D G+ L + LT L
Sbjct: 541 LSTLTKLQSIDLASCSKLTDASLEAFLNMPNLTSLDLGNCCLLSDEGMLTLSKVTSLTSL 600
Query: 210 NLEGC-PVTAACLDSLSALGSLFYLNLNRC 238
NL C +T L+ L L +L +NL C
Sbjct: 601 NLSECGEITDTGLEHLKTLVNLSSVNLWYC 630
Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
Query: 57 SSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
+ L S+DL+ S +TD+ L + NL SLD C +SD G+ L +++LTSL+
Sbjct: 545 TKLQSIDLASCSKLTDASLEAFLNMPNLTSLDLGNCCLLSDEGMLTLSKVTSLTSLNLSE 604
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRI 144
IT G++ L+NL ++L CT++
Sbjct: 605 CGEITDTGLEHLKTLVNLSSVNLWYCTKV 633
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 52/85 (61%), Gaps = 3/85 (3%)
Query: 20 LTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHL 77
LT+ SLEAF + L L LG ++D+ M + S+ +SL S++LS ++TD+GL HL
Sbjct: 558 LTDASLEAFLNMPNLTSLDLGNCCLLSDEGM-LTLSKVTSLTSLNLSECGEITDTGLEHL 616
Query: 78 KDCSNLQSLDFNFCIQISDGGLEHL 102
K NL S++ +C +++ G+ L
Sbjct: 617 KTLVNLSSVNLWYCTKVTPVGINFL 641
>gi|383455271|ref|YP_005369260.1| hypothetical protein COCOR_03284 [Corallococcus coralloides DSM
2259]
gi|380733131|gb|AFE09133.1| leucine-rich repeat-containing protein [Corallococcus coralloides
DSM 2259]
Length = 614
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 115/338 (34%), Positives = 173/338 (51%), Gaps = 4/338 (1%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+S++S+ LS + + D L L + + LQ+L + +++D GL L+G+ +L L
Sbjct: 129 TSVVSLHLSETALGDEHLAALANATRLQALHLD-GTRVTDAGLASLQGMPHLAVLRLD-A 186
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A++ +G+ A L L +L L + GL L +LE L++ + D+ + L
Sbjct: 187 TAVSDRGLALLASLTTLRRLSLSGTSVSPRGLGLLAAQTELEWLDLS-DTTVDDTVLASL 245
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
G L++L +S + VT++G+ L+ + L L L V+ A L L AL L L+L
Sbjct: 246 PG-ERLRTLVMSGTHVTNAGLGALRRMPALRWLGLARTSVSDAGLAHLGALRMLDALHLG 304
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
++D G +++ +L+VL L I + HL GLT LE L+LD IG+ L +L
Sbjct: 305 STGVTDAGLIHLARLPALRVLVLSKTRIRGPGVRHLAGLTQLEVLHLDDTSIGNAALRHL 364
Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
GL +L+ LELS T V SGL LSGL LES+ LS + D SL L L L L+L
Sbjct: 365 QGLQHLRDLELSRTAVTGSGLPALSGLQALESLGLSGLALEDASLAALEPLERLSRLDLS 424
Query: 357 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRS 394
A +I L L S L HLDL D A L++
Sbjct: 425 ATRIGPEALKQLGSRMVLRHLDLSRTDFNDGWVATLQT 462
Score = 117 bits (294), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 117/365 (32%), Positives = 177/365 (48%), Gaps = 33/365 (9%)
Query: 47 KWMD---------VIAS-QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISD 96
+W+D V+AS G L ++ +SG+ VT++GL L+ L+ L +SD
Sbjct: 228 EWLDLSDTTVDDTVLASLPGERLRTLVMSGTHVTNAGLGALRRMPALRWLGLART-SVSD 286
Query: 97 GGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC-----TRIHG-GLVN 150
GL HL L L +L A GLI+L +L R TRI G G+ +
Sbjct: 287 AGLAHLGALRMLDALHLGSTGVTDA-------GLIHLARLPALRVLVLSKTRIRGPGVRH 339
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
L GL +LE L++ I ++ ++ L GL +L+ L++S + VT SG+ L GLQ L L
Sbjct: 340 LAGLTQLEVLHLD-DTSIGNAALRHLQGLQHLRDLELSRTAVTGSGLPALSGLQALESLG 398
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS---LKVLNLGFNEITDE 267
L G + A L +L L L L+L+ ++ G E ++GS L+ L+L + D
Sbjct: 399 LSGLALEDASLAALEPLERLSRLDLSATRI---GPEALKQLGSRMVLRHLDLSRTDFNDG 455
Query: 268 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 327
+ L+ T L+SL + D GL L+ L L+ L++S + SGL L L +L
Sbjct: 456 WVATLQTFTQLQSLRAIRTILTDLGLGQLSELRELESLQVSGNPISGSGLVPLQKLPHLV 515
Query: 328 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 387
++L T ++D R LAG L L+L +I D L L L L L ++TD+
Sbjct: 516 KLDLGGTWMTDDGARLLAGFEKLSWLSLAGTRIGDESLVHLPG--SLLTLYLLRTKVTDA 573
Query: 388 GAAYL 392
G L
Sbjct: 574 GMPAL 578
Score = 104 bits (259), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 100/329 (30%), Positives = 157/329 (47%), Gaps = 4/329 (1%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
LSG+ V+ GL L + L+ LD + + D L L G L +L + +T G
Sbjct: 208 LSGTSVSPRGLGLLAAQTELEWLDLSDTT-VDDTVLASLPG-ERLRTLVMSGTH-VTNAG 264
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
+ A + L L L R + GL +L L L++L++ +TD+ + L+ L L+
Sbjct: 265 LGALRRMPALRWLGLARTSVSDAGLAHLGALRMLDALHLG-STGVTDAGLIHLARLPALR 323
Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
L +S +++ G+ +L GL +L +L+L+ + A L L L L L L+R ++
Sbjct: 324 VLVLSKTRIRGPGVRHLAGLTQLEVLHLDDTSIGNAALRHLQGLQHLRDLELSRTAVTGS 383
Query: 244 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 303
G S + +L+ L L + D L L+ L L L+L + IG E L L L+
Sbjct: 384 GLPALSGLQALESLGLSGLALEDASLAALEPLERLSRLDLSATRIGPEALKQLGSRMVLR 443
Query: 304 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 363
L+LS T + L T L+S+ T ++D L +L+ L L+SL + I+ +
Sbjct: 444 HLDLSRTDFNDGWVATLQTFTQLQSLRAIRTILTDLGLGQLSELRELESLQVSGNPISGS 503
Query: 364 GLAALTSLTGLTHLDLFGARITDSGAAYL 392
GL L L L LDL G +TD GA L
Sbjct: 504 GLVPLQKLPHLVKLDLGGTWMTDDGARLL 532
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 52/96 (54%)
Query: 300 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 359
++ L LS+T +G L L+ T L++++L T ++D L L G+ L L LDA
Sbjct: 129 TSVVSLHLSETALGDEHLAALANATRLQALHLDGTRVTDAGLASLQGMPHLAVLRLDATA 188
Query: 360 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRSK 395
++D GLA L SLT L L L G ++ G L ++
Sbjct: 189 VSDRGLALLASLTTLRRLSLSGTSVSPRGLGLLAAQ 224
>gi|46447142|ref|YP_008507.1| hypothetical protein pc1508 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400783|emb|CAF24232.1| hypothetical protein pc1508 [Candidatus Protochlamydia amoebophila
UWE25]
Length = 657
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 108/306 (35%), Positives = 165/306 (53%), Gaps = 9/306 (2%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
++TD+GL HL LQ L C ++D GL +L L NL L+ + T G+
Sbjct: 346 NLTDTGLAHLSPLVALQHLSLFDCENLTDAGLAYLSPLENLQHLNLSHSKHFTNAGLAHL 405
Query: 128 AGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
+ L L L+L C + G GL +L L+ L+ L + +C +TD+ + L+ L L+ L
Sbjct: 406 SPLAALQHLNLFGCENLTGDGLTHLSSLVALQHLGLNFCRNLTDAGLAHLAPLVTLQHLD 465
Query: 187 IS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDD 243
++ C +TD+G+A+L L L LNL C +T A L LS L +L +L+LN C L+D
Sbjct: 466 LNFCDNLTDTGLAHLTSLVTLQHLNLGWCRNLTDAGLVHLSPLENLQHLDLNDCYNLTDA 525
Query: 244 GCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCN 301
G + + +L+ LNL ++TD L HL L L+ L+L C + D GL +LT L
Sbjct: 526 GLAHLTPLVALQHLNLRRCRKLTDAGLAHLTPLVALQYLDLFGCRNLTDAGLTHLTPLIA 585
Query: 302 LKCLELSD-TQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-R 358
L+ L L + GL HL+ L L+ ++LSF + +++ LR L+ L +LK L+L
Sbjct: 586 LQHLYLGLCNNLTDRGLAHLTPLAVLQRLDLSFCSNLTNAGLRHLSPLVALKYLDLSGCE 645
Query: 359 QITDTG 364
+TD G
Sbjct: 646 NLTDAG 651
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 111/297 (37%), Positives = 165/297 (55%), Gaps = 10/297 (3%)
Query: 106 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKW 164
+++ L+F RN +T + NL L LE C + GL +L L+ L+ L++
Sbjct: 309 NDIEELNFSRNAYLTDAHLLVLKNCKNLKALYLEGCKNLTDTGLAHLSPLVALQHLSLFD 368
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSK-VTDSGIAYLKGLQKLTLLNLEGCP-VTAACLD 222
C +TD+ + LS L NL+ L +S SK T++G+A+L L L LNL GC +T L
Sbjct: 369 CENLTDAGLAYLSPLENLQHLNLSHSKHFTNAGLAHLSPLAALQHLNLFGCENLTGDGLT 428
Query: 223 SLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLES 280
LS+L +L +L LN C+ L+D G + + +L+ L+L F + +TD L HL L L+
Sbjct: 429 HLSSLVALQHLGLNFCRNLTDAGLAHLAPLVTLQHLDLNFCDNLTDTGLAHLTSLVTLQH 488
Query: 281 LNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSF-TGIS 337
LNL C + D GLV+L+ L NL+ L+L+D + +GL HL+ L L+ +NL ++
Sbjct: 489 LNLGWCRNLTDAGLVHLSPLENLQHLDLNDCYNLTDAGLAHLTPLVALQHLNLRRCRKLT 548
Query: 338 DGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYL 392
D L L L +L+ L+L R +TD GL LT L L HL L +TD G A+L
Sbjct: 549 DAGLAHLTPLVALQYLDLFGCRNLTDAGLTHLTPLIALQHLYLGLCNNLTDRGLAHL 605
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 123/383 (32%), Positives = 197/383 (51%), Gaps = 14/383 (3%)
Query: 24 SLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLS-GSDVTDSGLIHLKDCSN 82
+L+ + + + L Q P + K+ +I + + ++ S + +TD+ L+ LK+C N
Sbjct: 277 ALKNYLEYTVVSTLLNQAPDLT-KFEKIINYFANDIEELNFSRNAYLTDAHLLVLKNCKN 335
Query: 83 LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT 142
L++L C ++D GL HL L L LS +T G+ + L NL L+L
Sbjct: 336 LKALYLEGCKNLTDTGLAHLSPLVALQHLSLFDCENLTDAGLAYLSPLENLQHLNLSHSK 395
Query: 143 RI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYL 200
+ GL +L L L+ LN+ C +T + LS L L+ L ++ C +TD+G+A+L
Sbjct: 396 HFTNAGLAHLSPLAALQHLNLFGCENLTGDGLTHLSSLVALQHLGLNFCRNLTDAGLAHL 455
Query: 201 KGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLN 258
L L L+L C +T L L++L +L +LNL C+ L+D G S + +L+ L+
Sbjct: 456 APLVTLQHLDLNFCDNLTDTGLAHLTSLVTLQHLNLGWCRNLTDAGLVHLSPLENLQHLD 515
Query: 259 LG--FNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQ-VGS 314
L +N +TD L HL L L+ LNL C + D GL +LT L L+ L+L + +
Sbjct: 516 LNDCYN-LTDAGLAHLTPLVALQHLNLRRCRKLTDAGLAHLTPLVALQYLDLFGCRNLTD 574
Query: 315 SGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT 372
+GL HL+ L L+ + L ++D L L L+ L+ L+L +T+ GL L+ L
Sbjct: 575 AGLTHLTPLIALQHLYLGLCNNLTDRGLAHLTPLAVLQRLDLSFCSNLTNAGLRHLSPLV 634
Query: 373 GLTHLDLFG-ARITDSGAAYLRS 394
L +LDL G +TD+G R
Sbjct: 635 ALKYLDLSGCENLTDAGWHIWRP 657
>gi|32477504|ref|NP_870498.1| adenylate cyclase regulatory protein [Rhodopirellula baltica SH 1]
gi|32448058|emb|CAD77575.1| conserved hypothetical protein-putative adenylate cyclase
regulatory protein [Rhodopirellula baltica SH 1]
Length = 513
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 104/322 (32%), Positives = 156/322 (48%), Gaps = 33/322 (10%)
Query: 42 PGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQ--ISDGGL 99
PG++D M+ + S ++L + L+ + +TD LK + SLD F + ++D GL
Sbjct: 176 PGIDDAGMENLKSL-ANLKRLTLADTAITDQ---TLKTVGEMTSLDALFLRRTGVTDEGL 231
Query: 100 EHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 159
E L GLS L ++ R N I GM + A + L+ + LE+ GLV L L L+S
Sbjct: 232 ELLTGLSKLRAIDLRNTN-IGDAGMDSLAKIKTLIDVKLEKSKVTDEGLVKLAPL-PLKS 289
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
+N +C I MK L L++LQ SK+ D +A LKGL KL L + GC VT
Sbjct: 290 INFNYCTTINGPTMKMLGQTPTLENLQGDYSKINDESMAELKGLSKLKRLRIRGCDVTGE 349
Query: 220 ------------------------CLDSLSALGSLFYLNLNRCQL-SDDGCEKFSKIGSL 254
L +S L ++ +++++ C+L S +G + K+ L
Sbjct: 350 GIQHIAGNKALARFELRDSSVDDDGLKVISQLPAVTHVDISECRLASPEGIAQLGKLTGL 409
Query: 255 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 314
L L + DE L L NLE LNL S + DE L L + LK L ++ TQ+G
Sbjct: 410 TYLGLWETKTNDETLAGFGDLVNLEELNLKSTAVTDESLPVLMKMTKLKTLNVAGTQLGD 469
Query: 315 SGLRHLSGLTNLESINLSFTGI 336
L+ L NL+S+N++ T I
Sbjct: 470 DSFLELAKLPNLKSMNVANTSI 491
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 86/307 (28%), Positives = 140/307 (45%), Gaps = 33/307 (10%)
Query: 90 FCIQISDGGLE----HLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH 145
F I GG+E HLRG+ N T +F I GM+ L NL +L L
Sbjct: 146 FSIANQKGGIEESLQHLRGIPNTTEATFN-GPGIDDAGMENLKSLANLKRLTLADT---- 200
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK 205
ITD +K + +T+L +L + + VTD G+ L GL K
Sbjct: 201 ---------------------AITDQTLKTVGEMTSLDALFLRRTGVTDEGLELLTGLSK 239
Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEI 264
L ++L + A +DSL+ + +L + L + +++D+G K + + LK +N + I
Sbjct: 240 LRAIDLRNTNIGDAGMDSLAKIKTLIDVKLEKSKVTDEGLVKLAPL-PLKSINFNYCTTI 298
Query: 265 TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT 324
+ L LE+L D I DE + L GL LK L + V G++H++G
Sbjct: 299 NGPTMKMLGQTPTLENLQGDYSKINDESMAELKGLSKLKRLRIRGCDVTGEGIQHIAGNK 358
Query: 325 NLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGAR 383
L L + + D L+ ++ L ++ +++ + R + G+A L LTGLT+L L+ +
Sbjct: 359 ALARFELRDSSVDDDGLKVISQLPAVTHVDISECRLASPEGIAQLGKLTGLTYLGLWETK 418
Query: 384 ITDSGAA 390
D A
Sbjct: 419 TNDETLA 425
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 71/127 (55%)
Query: 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 325
+E L HL+G+ N + GI D G+ NL L NLK L L+DT + L+ + +T+
Sbjct: 156 EESLQHLRGIPNTTEATFNGPGIDDAGMENLKSLANLKRLTLADTAITDQTLKTVGEMTS 215
Query: 326 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
L+++ L TG++D L L GLS L++++L I D G+ +L + L + L +++T
Sbjct: 216 LDALFLRRTGVTDEGLELLTGLSKLRAIDLRNTNIGDAGMDSLAKIKTLIDVKLEKSKVT 275
Query: 386 DSGAAYL 392
D G L
Sbjct: 276 DEGLVKL 282
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 99/226 (43%), Gaps = 39/226 (17%)
Query: 192 VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI 251
V + IA KG + +L +L G P T N + D G E +
Sbjct: 143 VVEFSIANQKGGIEESLQHLRGIPNTTEA-------------TFNGPGIDDAGMENLKSL 189
Query: 252 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 311
+LK L L ITD+ L + +T+L++L L G+ DEGL LTGL L+ ++L +T
Sbjct: 190 ANLKRLTLADTAITDQTLKTVGEMTSLDALFLRRTGVTDEGLELLTGLSKLRAIDLRNTN 249
Query: 312 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL---------------- 355
+G +G+ L+ + L + L + ++D L KLA L LKS+N
Sbjct: 250 IGDAGMDSLAKIKTLIDVKLEKSKVTDEGLVKLAPL-PLKSINFNYCTTINGPTMKMLGQ 308
Query: 356 ---------DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
D +I D +A L L+ L L + G +T G ++
Sbjct: 309 TPTLENLQGDYSKINDESMAELKGLSKLKRLRIRGCDVTGEGIQHI 354
>gi|46447626|ref|YP_008991.1| hypothetical protein pc1992 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46401267|emb|CAF24716.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 537
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 104/288 (36%), Positives = 163/288 (56%), Gaps = 11/288 (3%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLT--SLSFRRNNAITAQGMKA 126
+TD+ L+ LKDC NL+ L+ C ++D GL HL L+ L LSF RN +T G+
Sbjct: 252 LTDAYLLALKDCKNLKMLNLKSCKNLTDAGLAHLTPLTALRRLDLSFCRN--LTDAGLAN 309
Query: 127 FAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
LI L LDL C + GL +L L L L++ C +TD+ + L+ L +L+ L
Sbjct: 310 LTPLIALQHLDLSWCKNLTDAGLAHLTPLGALHYLDLSICGKLTDAGLAHLTPLVDLQHL 369
Query: 186 QIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQ-LSD 242
+ C K++D+G+A+L+ L L L+L C +T A L L+ L +L +L+LNRC+ L++
Sbjct: 370 NLRYCQKLSDAGLAHLRSLVTLQHLDLSYCQNLTDAGLAHLARLTALQHLSLNRCKNLTE 429
Query: 243 DGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLC 300
G + +L+ L+L + ++T++ L K LT L+ LNL+ C + D GL +L+ L
Sbjct: 430 AGLVHLRPLVTLQHLDLSYCQKLTNDGLGLFKSLTALQYLNLNHCQKLTDAGLAHLSPLG 489
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGL 347
L+ L+L T + +GL HL L L+ + LS T ++D L L+ L
Sbjct: 490 ALQHLDLWCTNITDAGLAHLKPLGALQYLGLSRCTNLTDAGLAHLSPL 537
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 94/255 (36%), Positives = 150/255 (58%), Gaps = 8/255 (3%)
Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKL 206
L+ LK L+ LN+K C +TD+ + L+ LT L+ L +S C +TD+G+A L L L
Sbjct: 257 LLALKDCKNLKMLNLKSCKNLTDAGLAHLTPLTALRRLDLSFCRNLTDAGLANLTPLIAL 316
Query: 207 TLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGF-NE 263
L+L C +T A L L+ LG+L YL+L+ C +L+D G + + L+ LNL + +
Sbjct: 317 QHLDLSWCKNLTDAGLAHLTPLGALHYLDLSICGKLTDAGLAHLTPLVDLQHLNLRYCQK 376
Query: 264 ITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLS 321
++D L HL+ L L+ L+L C + D GL +L L L+ L L+ + + +GL HL
Sbjct: 377 LSDAGLAHLRSLVTLQHLDLSYCQNLTDAGLAHLARLTALQHLSLNRCKNLTEAGLVHLR 436
Query: 322 GLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDL 379
L L+ ++LS+ +++ L L++L+ LNL+ +++TD GLA L+ L L HLDL
Sbjct: 437 PLVTLQHLDLSYCQKLTNDGLGLFKSLTALQYLNLNHCQKLTDAGLAHLSPLGALQHLDL 496
Query: 380 FGARITDSGAAYLRS 394
+ ITD+G A+L+
Sbjct: 497 WCTNITDAGLAHLKP 511
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 96/265 (36%), Positives = 144/265 (54%), Gaps = 6/265 (2%)
Query: 65 SGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM 124
S ++TD+GL HL + L+ LD +FC ++D GL +L L L L +T G+
Sbjct: 273 SCKNLTDAGLAHLTPLTALRRLDLSFCRNLTDAGLANLTPLIALQHLDLSWCKNLTDAGL 332
Query: 125 KAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
L L LDL C ++ GL +L L+ L+ LN+++C ++D+ + L L L+
Sbjct: 333 AHLTPLGALHYLDLSICGKLTDAGLAHLTPLVDLQHLNLRYCQKLSDAGLAHLRSLVTLQ 392
Query: 184 SLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQ-L 240
L +S C +TD+G+A+L L L L+L C +T A L L L +L +L+L+ CQ L
Sbjct: 393 HLDLSYCQNLTDAGLAHLARLTALQHLSLNRCKNLTEAGLVHLRPLVTLQHLDLSYCQKL 452
Query: 241 SDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 299
++DG F + +L+ LNL ++TD L HL L L+ L+L I D GL +L L
Sbjct: 453 TNDGLGLFKSLTALQYLNLNHCQKLTDAGLAHLSPLGALQHLDLWCTNITDAGLAHLKPL 512
Query: 300 CNLKCLELSD-TQVGSSGLRHLSGL 323
L+ L LS T + +GL HLS L
Sbjct: 513 GALQYLGLSRCTNLTDAGLAHLSPL 537
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 85/244 (34%), Positives = 126/244 (51%), Gaps = 6/244 (2%)
Query: 13 ELVYSRCLTEVSLEAFRD-CALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVT 70
+L + R LT+ L ALQ L L + D + + G+ L +DLS +T
Sbjct: 295 DLSFCRNLTDAGLANLTPLIALQHLDLSWCKNLTDAGLAHLTPLGA-LHYLDLSICGKLT 353
Query: 71 DSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL 130
D+GL HL +LQ L+ +C ++SD GL HLR L L L +T G+ A L
Sbjct: 354 DAGLAHLTPLVDLQHLNLRYCQKLSDAGLAHLRSLVTLQHLDLSYCQNLTDAGLAHLARL 413
Query: 131 INLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS- 188
L L L RC + GLV+L+ L+ L+ L++ +C +T+ + LT L+ L ++
Sbjct: 414 TALQHLSLNRCKNLTEAGLVHLRPLVTLQHLDLSYCQKLTNDGLGLFKSLTALQYLNLNH 473
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEK 247
C K+TD+G+A+L L L L+L +T A L L LG+L YL L+RC L+D G
Sbjct: 474 CQKLTDAGLAHLSPLGALQHLDLWCTNITDAGLAHLKPLGALQYLGLSRCTNLTDAGLAH 533
Query: 248 FSKI 251
S +
Sbjct: 534 LSPL 537
>gi|108763744|ref|YP_632240.1| leucine-rich repeat-containing protein [Myxococcus xanthus DK 1622]
gi|108467624|gb|ABF92809.1| leucine-rich repeat domain protein [Myxococcus xanthus DK 1622]
Length = 624
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 122/388 (31%), Positives = 181/388 (46%), Gaps = 37/388 (9%)
Query: 16 YSRCLTEVSLEA--------FRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGS 67
Y+ L V EA R+ + +L G GV + V Q S ++++ +SG+
Sbjct: 90 YAEPLRPVRTEAEAREIAAVLREHHVPELSFGAV-GVPAPELLVALLQESGVVALQVSGT 148
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
D ++ L L++ + L++L N ++++ GL L+ + L L +
Sbjct: 149 DFGNAHLASLENATQLEALHLN-ATRVTNVGLAPLKRMRRLAVLRLDETPV-------SD 200
Query: 128 AGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
AGL +L + R + G V+ +GL L +P L+ L +
Sbjct: 201 AGLASLSEHTTLRRVTLAGTAVSPQGLGFLAR--------------QP-----GLEELDL 241
Query: 188 SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 247
S + V D+ +A L G L LNL G VT A L LSA+ SL L L R SD
Sbjct: 242 SDTAVDDTVLAVLPG-APLHTLNLSGTKVTNAGLRGLSAMPSLRRLGLARTAASDASLLH 300
Query: 248 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 307
+ + L+ L+LG ++TD L+HL L L +L L I GL +L GL L+ L L
Sbjct: 301 ITGLRELEALHLGSTQVTDAGLLHLAKLPALRALVLSKARIRGAGLRHLAGLSRLEALHL 360
Query: 308 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 367
DT VG S LRHL GL L ++LS T I+ L++L+ L +L+SL L +TD L A
Sbjct: 361 DDTLVGDSALRHLRGLNELRELDLSRTAITGTGLQELSTLVALESLWLSGLALTDDSLTA 420
Query: 368 LTSLTGLTHLDLFGARITDSGAAYLRSK 395
L L+ LT L L I +L S+
Sbjct: 421 LAPLSQLTRLALSHTPIGPEALNHLGSR 448
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 118/407 (28%), Positives = 186/407 (45%), Gaps = 29/407 (7%)
Query: 6 ISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDV----IASQG----- 56
+S Q L L E+ L D A+ D L PG +++ + + G
Sbjct: 222 VSPQGLGFLARQPGLEELDLS---DTAVDDTVLAVLPGAPLHTLNLSGTKVTNAGLRGLS 278
Query: 57 --SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
SL + L+ + +D+ L+H+ L++L Q++D GL HL L L +L
Sbjct: 279 AMPSLRRLGLARTAASDASLLHITGLRELEALHLG-STQVTDAGLLHLAKLPALRALVLS 337
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
+ I G++ AGL L L L+ L +L+GL +L L++ IT + ++
Sbjct: 338 KAR-IRGAGLRHLAGLSRLEALHLDDTLVGDSALRHLRGLNELRELDLS-RTAITGTGLQ 395
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
LS L L+SL +S +TD + L L +LT L L P+ L+ L + L +L+
Sbjct: 396 ELSTLVALESLWLSGLALTDDSLTALAPLSQLTRLALSHTPIGPEALNHLGSRPLLRHLD 455
Query: 235 LNRCQLSDDGC----EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
L++ +D+ + F + SLK +TD L T LE++++ I
Sbjct: 456 LSKTGFTDEWVPSIRQAFPGLHSLKAER---TLLTDAGLGQFAEWTELEAIHVAGTLING 512
Query: 291 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS-S 349
GL L L L L+L T++ S G + L G T L + LS G+ G L L S
Sbjct: 513 SGLTRLHTLARLTTLDLGATRLDSEGQKALQGFTKL--VWLSVAGVRTGD-EMLGHLPRS 569
Query: 350 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI-TDSGAAYLRSK 395
L++L L ++TD GL AL L L LDL G + T++ +A R +
Sbjct: 570 LRTLYLTRTKVTDAGLPALHKLPHLRELDLRGTAVSTEARSALARER 616
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 95/341 (27%), Positives = 169/341 (49%), Gaps = 5/341 (1%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ ++L V L+G+ V+ GL L L+ LD + + D L L G + L +L+
Sbjct: 207 SEHTTLRRVTLAGTAVSPQGLGFLARQPGLEELDLSDT-AVDDTVLAVLPG-APLHTLNL 264
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
+T G++ + + +L +L L R L+++ GL +LE+L++ +TD+ +
Sbjct: 265 S-GTKVTNAGLRGLSAMPSLRRLGLARTAASDASLLHITGLRELEALHLG-STQVTDAGL 322
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
L+ L L++L +S +++ +G+ +L GL +L L+L+ V + L L L L L
Sbjct: 323 LHLAKLPALRALVLSKARIRGAGLRHLAGLSRLEALHLDDTLVGDSALRHLRGLNELREL 382
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+L+R ++ G ++ S + +L+ L L +TD+ L L L+ L L L IG E L
Sbjct: 383 DLSRTAITGTGLQELSTLVALESLWLSGLALTDDSLTALAPLSQLTRLALSHTPIGPEAL 442
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHL-SGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
+L L+ L+LS T + + L S+ T ++D L + A + L++
Sbjct: 443 NHLGSRPLLRHLDLSKTGFTDEWVPSIRQAFPGLHSLKAERTLLTDAGLGQFAEWTELEA 502
Query: 353 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
+++ I +GL L +L LT LDL R+ G L+
Sbjct: 503 IHVAGTLINGSGLTRLHTLARLTTLDLGATRLDSEGQKALQ 543
>gi|46445970|ref|YP_007335.1| hypothetical protein pc0336 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46399611|emb|CAF23060.1| hypothetical protein pc0336 [Candidatus Protochlamydia amoebophila
UWE25]
Length = 602
Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 123/322 (38%), Positives = 182/322 (56%), Gaps = 11/322 (3%)
Query: 77 LKDCSN-LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135
LK SN ++ LDF ++D L L+ NL L +R + +T G+ A L+ L
Sbjct: 278 LKHFSNEIERLDFLENDYLTDTHLLVLKNCKNLKELYLQRCHNLTDAGLAHLAPLLALQH 337
Query: 136 LDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVT 193
LDL C + GL +L LM L+ LN+ +C +TD+ + L+ L L+ L +S C +T
Sbjct: 338 LDLSECNNLTDAGLAHLTPLMALQHLNLSYCKNLTDAGLAHLTPLVALQYLDLSGCDNLT 397
Query: 194 DSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKI 251
D+G+A+L L L L L C +T A L L+ L +L YL+LN C +L+D G + +
Sbjct: 398 DAGLAHLTPLMALQHLGLSACDKLTDAGLAHLTPLVALQYLSLNGCDKLTDVGLAHLTPL 457
Query: 252 GSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD 309
+L LNL + +++TD L HL L L+ LNL C + D GL +LT L L+ L+L+
Sbjct: 458 VALTHLNLSWCDKLTDAGLAHLTPLVALQHLNLRWCRKLTDAGLAHLTPLVALQHLDLNR 517
Query: 310 -TQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLA 366
++ +GL HL+ L NL +NLS+ ++D L L L +L+ LNL R++TD GLA
Sbjct: 518 CPKLTDAGLAHLTSLVNLRHLNLSYCRKLTDVGLAHLTPLVALQHLNLSCCRKLTDAGLA 577
Query: 367 ALTSLTGLTHLDLFGA-RITDS 387
L SL L HLDL G ++TD+
Sbjct: 578 HLASLLALQHLDLSGCDKLTDA 599
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 100/276 (36%), Positives = 154/276 (55%), Gaps = 7/276 (2%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
L +TD+ L+ LK+C NL+ L C ++D GL HL L L L N +T G
Sbjct: 291 LENDYLTDTHLLVLKNCKNLKELYLQRCHNLTDAGLAHLAPLLALQHLDLSECNNLTDAG 350
Query: 124 MKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNL 182
+ L+ L L+L C + GL +L L+ L+ L++ C+ +TD+ + L+ L L
Sbjct: 351 LAHLTPLMALQHLNLSYCKNLTDAGLAHLTPLVALQYLDLSGCDNLTDAGLAHLTPLMAL 410
Query: 183 KSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-Q 239
+ L +S C K+TD+G+A+L L L L+L GC +T L L+ L +L +LNL+ C +
Sbjct: 411 QHLGLSACDKLTDAGLAHLTPLVALQYLSLNGCDKLTDVGLAHLTPLVALTHLNLSWCDK 470
Query: 240 LSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLT 297
L+D G + + +L+ LNL + ++TD L HL L L+ L+L+ C + D GL +LT
Sbjct: 471 LTDAGLAHLTPLVALQHLNLRWCRKLTDAGLAHLTPLVALQHLDLNRCPKLTDAGLAHLT 530
Query: 298 GLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLS 332
L NL+ L LS ++ GL HL+ L L+ +NLS
Sbjct: 531 SLVNLRHLNLSYCRKLTDVGLAHLTPLVALQHLNLS 566
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 89/164 (54%), Gaps = 8/164 (4%)
Query: 40 QYPGVN--DKWMDVIASQGSSLLSV---DLSGSD-VTDSGLIHLKDCSNLQSLDFNFCIQ 93
QY +N DK DV + + L+++ +LS D +TD+GL HL LQ L+ +C +
Sbjct: 436 QYLSLNGCDKLTDVGLAHLTPLVALTHLNLSWCDKLTDAGLAHLTPLVALQHLNLRWCRK 495
Query: 94 ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLK 152
++D GL HL L L L R +T G+ L+NL L+L C ++ GL +L
Sbjct: 496 LTDAGLAHLTPLVALQHLDLNRCPKLTDAGLAHLTSLVNLRHLNLSYCRKLTDVGLAHLT 555
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDS 195
L+ L+ LN+ C +TD+ + L+ L L+ L +S C K+TD+
Sbjct: 556 PLVALQHLNLSCCRKLTDAGLAHLASLLALQHLDLSGCDKLTDA 599
>gi|440717669|ref|ZP_20898151.1| hypothetical protein RBSWK_05211 [Rhodopirellula baltica SWK14]
gi|436437289|gb|ELP30945.1| hypothetical protein RBSWK_05211 [Rhodopirellula baltica SWK14]
Length = 442
Score = 127 bits (320), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 104/322 (32%), Positives = 157/322 (48%), Gaps = 33/322 (10%)
Query: 42 PGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQ--ISDGGL 99
PG++D M+ + S ++L + L+ + +TD LK + SLD F + ++D GL
Sbjct: 105 PGIDDAGMENLKSL-ANLKRLTLADTAITDQ---TLKTVGEMTSLDALFLRRTGVTDEGL 160
Query: 100 EHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 159
E L GLS L ++ R N I GM + A + L+ + LE+ GLV L L L+S
Sbjct: 161 ELLTGLSKLRAIDLRNTN-IGDAGMDSLAKIKTLIDVKLEKSKVTDEGLVKLAPL-PLKS 218
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
+N +C I MK L L++LQ SK+ D+ +A LKGL KL L + GC VT
Sbjct: 219 INFNYCTTINGPTMKMLGQTPTLENLQGDYSKINDASMAELKGLSKLKRLRIRGCDVTGE 278
Query: 220 ------------------------CLDSLSALGSLFYLNLNRCQL-SDDGCEKFSKIGSL 254
L +S L ++ +++++ C+L S +G + K+ L
Sbjct: 279 GIQHIAGNKALARFELRDSSVDDDGLKVISQLPAVTHVDISECRLASPEGIAQLGKLIGL 338
Query: 255 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 314
L L + DE L L NLE LNL S + DE L L + LK L ++ TQ+G
Sbjct: 339 TYLGLWETKTNDETLAGFGDLVNLEELNLKSTAVTDESLPVLMKMTKLKTLNVAGTQLGD 398
Query: 315 SGLRHLSGLTNLESINLSFTGI 336
L+ L NL+S+N++ T I
Sbjct: 399 DSFLELAKLPNLKSMNVANTSI 420
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 89/329 (27%), Positives = 147/329 (44%), Gaps = 38/329 (11%)
Query: 69 VTDSGLIHLKDCS-NLQSLDFNFCIQISDGGLE----HLRGLSNLTSLSFRRNNAITAQG 123
+T++G I KD N+ F I GG+E HL G+ N T +F I G
Sbjct: 57 LTEAGYILTKDDDGNV----VEFSIANQKGGIEESLQHLSGIPNTTEATFN-GPGIDDAG 111
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
M+ L NL +L L ITD +K + +T+L
Sbjct: 112 MENLKSLANLKRLTLADT-------------------------AITDQTLKTVGEMTSLD 146
Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
+L + + VTD G+ L GL KL ++L + A +DSL+ + +L + L + +++D+
Sbjct: 147 ALFLRRTGVTDEGLELLTGLSKLRAIDLRNTNIGDAGMDSLAKIKTLIDVKLEKSKVTDE 206
Query: 244 GCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
G K + + LK +N + I + L LE+L D I D + L GL L
Sbjct: 207 GLVKLAPL-PLKSINFNYCTTINGPTMKMLGQTPTLENLQGDYSKINDASMAELKGLSKL 265
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQIT 361
K L + V G++H++G L L + + D L+ ++ L ++ +++ + R +
Sbjct: 266 KRLRIRGCDVTGEGIQHIAGNKALARFELRDSSVDDDGLKVISQLPAVTHVDISECRLAS 325
Query: 362 DTGLAALTSLTGLTHLDLFGARITDSGAA 390
G+A L L GLT+L L+ + D A
Sbjct: 326 PEGIAQLGKLIGLTYLGLWETKTNDETLA 354
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 70/127 (55%)
Query: 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 325
+E L HL G+ N + GI D G+ NL L NLK L L+DT + L+ + +T+
Sbjct: 85 EESLQHLSGIPNTTEATFNGPGIDDAGMENLKSLANLKRLTLADTAITDQTLKTVGEMTS 144
Query: 326 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
L+++ L TG++D L L GLS L++++L I D G+ +L + L + L +++T
Sbjct: 145 LDALFLRRTGVTDEGLELLTGLSKLRAIDLRNTNIGDAGMDSLAKIKTLIDVKLEKSKVT 204
Query: 386 DSGAAYL 392
D G L
Sbjct: 205 DEGLVKL 211
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 99/226 (43%), Gaps = 39/226 (17%)
Query: 192 VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI 251
V + IA KG + +L +L G P T N + D G E +
Sbjct: 72 VVEFSIANQKGGIEESLQHLSGIPNTTEA-------------TFNGPGIDDAGMENLKSL 118
Query: 252 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 311
+LK L L ITD+ L + +T+L++L L G+ DEGL LTGL L+ ++L +T
Sbjct: 119 ANLKRLTLADTAITDQTLKTVGEMTSLDALFLRRTGVTDEGLELLTGLSKLRAIDLRNTN 178
Query: 312 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL---------------- 355
+G +G+ L+ + L + L + ++D L KLA L LKS+N
Sbjct: 179 IGDAGMDSLAKIKTLIDVKLEKSKVTDEGLVKLAPL-PLKSINFNYCTTINGPTMKMLGQ 237
Query: 356 ---------DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
D +I D +A L L+ L L + G +T G ++
Sbjct: 238 TPTLENLQGDYSKINDASMAELKGLSKLKRLRIRGCDVTGEGIQHI 283
>gi|417301579|ref|ZP_12088730.1| conserved hypothetical protein, secreted [Rhodopirellula baltica
WH47]
gi|327542171|gb|EGF28664.1| conserved hypothetical protein, secreted [Rhodopirellula baltica
WH47]
Length = 442
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 103/320 (32%), Positives = 152/320 (47%), Gaps = 29/320 (9%)
Query: 42 PGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEH 101
PG++D M+ + S L + L+ + +TD L ++Q L F ++D GLE
Sbjct: 105 PGIDDAGMENLTSL-PKLKYLTLADTAITDETLKTAGKLDSVQGL-FLRRTGVTDEGLEL 162
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
L GLS L ++ R N I GM + A + L+ + LE+ GLV L L L+S+N
Sbjct: 163 LTGLSKLRAIDLRNTN-IGDAGMDSLAKIKTLIDVQLEKSKVTDEGLVKLAPL-PLKSIN 220
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA-- 219
+C I MK L L+ LQ SK+ D+ +A LKGL KL L + GC VT
Sbjct: 221 FNYCTTINGPTMKMLGQTPTLEYLQGDYSKINDASMAELKGLSKLKRLRIRGCDVTGEGI 280
Query: 220 ----------------------CLDSLSALGSLFYLNLNRCQL-SDDGCEKFSKIGSLKV 256
L +S L ++ Y++++ C+L S +G + K+ L
Sbjct: 281 QHIAGNKALARFELRDSSVDDDGLKVISQLPAVTYVDISECRLASPEGIAQLGKLTGLTY 340
Query: 257 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 316
L L + DE L L NLE LNL S + DE L L + LK L ++ TQ+G
Sbjct: 341 LGLWETKTNDETLAGFGDLVNLEELNLKSTAVTDESLPVLMKMTKLKTLNVAGTQLGDDS 400
Query: 317 LRHLSGLTNLESINLSFTGI 336
L+ L NL+S+N++ T I
Sbjct: 401 FLELAKLPNLKSMNVANTSI 420
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 90/318 (28%), Positives = 149/318 (46%), Gaps = 6/318 (1%)
Query: 71 DSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL 130
+ L HL N FN I D G+E+L L L L+ + AIT + +K L
Sbjct: 85 EESLQHLSGIPNTTKATFN-GPGIDDAGMENLTSLPKLKYLTLA-DTAITDETLKTAGKL 142
Query: 131 INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS 190
++ L L R GL L GL KL +++++ N I D+ M L+ + L +Q+ S
Sbjct: 143 DSVQGLFLRRTGVTDEGLELLTGLSKLRAIDLRNTN-IGDAGMDSLAKIKTLIDVQLEKS 201
Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 249
KVTD G+ L L L +N C + + L +L YL + +++D +
Sbjct: 202 KVTDEGLVKLAPL-PLKSINFNYCTTINGPTMKMLGQTPTLEYLQGDYSKINDASMAELK 260
Query: 250 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 309
+ LK L + ++T E + H+ G L L + D+GL ++ L + +++S+
Sbjct: 261 GLSKLKRLRIRGCDVTGEGIQHIAGNKALARFELRDSSVDDDGLKVISQLPAVTYVDISE 320
Query: 310 TQVGSS-GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 368
++ S G+ L LT L + L T +D +L L +L+ LNL + +TD L L
Sbjct: 321 CRLASPEGIAQLGKLTGLTYLGLWETKTNDETLAGFGDLVNLEELNLKSTAVTDESLPVL 380
Query: 369 TSLTGLTHLDLFGARITD 386
+T L L++ G ++ D
Sbjct: 381 MKMTKLKTLNVAGTQLGD 398
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 76/286 (26%), Positives = 132/286 (46%), Gaps = 4/286 (1%)
Query: 107 NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCN 166
N+ S + ++ +G+ N K G+ NL L KL+ L +
Sbjct: 71 NVVEFSIANQKGGIEESLQHLSGIPNTTKATFNGPGIDDAGMENLTSLPKLKYLTLADT- 129
Query: 167 CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 226
ITD +K L +++ L + + VTD G+ L GL KL ++L + A +DSL+
Sbjct: 130 AITDETLKTAGKLDSVQGLFLRRTGVTDEGLELLTGLSKLRAIDLRNTNIGDAGMDSLAK 189
Query: 227 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDS 285
+ +L + L + +++D+G K + + LK +N + I + L LE L D
Sbjct: 190 IKTLIDVQLEKSKVTDEGLVKLAPL-PLKSINFNYCTTINGPTMKMLGQTPTLEYLQGDY 248
Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 345
I D + L GL LK L + V G++H++G L L + + D L+ ++
Sbjct: 249 SKINDASMAELKGLSKLKRLRIRGCDVTGEGIQHIAGNKALARFELRDSSVDDDGLKVIS 308
Query: 346 GLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 390
L ++ +++ + R + G+A L LTGLT+L L+ + D A
Sbjct: 309 QLPAVTYVDISECRLASPEGIAQLGKLTGLTYLGLWETKTNDETLA 354
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 96/226 (42%), Gaps = 39/226 (17%)
Query: 192 VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI 251
V + IA KG + +L +L G P T N + D G E + +
Sbjct: 72 VVEFSIANQKGGIEESLQHLSGIPNTTKA-------------TFNGPGIDDAGMENLTSL 118
Query: 252 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 311
LK L L ITDE L L +++ L L G+ DEGL LTGL L+ ++L +T
Sbjct: 119 PKLKYLTLADTAITDETLKTAGKLDSVQGLFLRRTGVTDEGLELLTGLSKLRAIDLRNTN 178
Query: 312 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL---------------- 355
+G +G+ L+ + L + L + ++D L KLA L LKS+N
Sbjct: 179 IGDAGMDSLAKIKTLIDVQLEKSKVTDEGLVKLAPL-PLKSINFNYCTTINGPTMKMLGQ 237
Query: 356 ---------DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
D +I D +A L L+ L L + G +T G ++
Sbjct: 238 TPTLEYLQGDYSKINDASMAELKGLSKLKRLRIRGCDVTGEGIQHI 283
>gi|149174696|ref|ZP_01853321.1| hypothetical protein PM8797T_26210 [Planctomyces maris DSM 8797]
gi|148846390|gb|EDL60728.1| hypothetical protein PM8797T_26210 [Planctomyces maris DSM 8797]
Length = 460
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 111/365 (30%), Positives = 172/365 (47%), Gaps = 27/365 (7%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDF---NFC------------------- 91
S +L +DL G++ D+ L HL +L+ L NF
Sbjct: 90 SDDGRVLILDLKGTNAQDADLKHLAGLPSLERLILWGPNFTDVSTEEIGKKNKLWFLSLE 149
Query: 92 -IQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLV 149
I D G+++L L L LS R N IT +K A L LDL I+ G+
Sbjct: 150 STAIGDEGVKNLSDLQGLQVLSLRATN-ITNDALKVVAAFPELKDLDLRFNKEINDEGMP 208
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL 209
++KG+ L+ L ++ +TD MK ++ L NL+ L ++D + LK + L L
Sbjct: 209 HIKGMKNLKVLKVQ-ATQVTDEGMKDIAALPNLQRLNTWGRNISDETLELLKD-KNLVSL 266
Query: 210 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
L+ ++ + L + ++ L+L R + + G E + L+ L+L +TDE +
Sbjct: 267 ELDDTEISDEGMKYLKDMTNMESLHLRRDFVGNPGIENIQNMKKLQTLHLRDTVVTDEGM 326
Query: 270 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 329
+L GLT+L L+LD IGD+GL + L L L L T+ GL+ +SG T L +
Sbjct: 327 KYLSGLTDLTYLDLDESMIGDQGLEQIKDLKKLTRLGLWGTETTDQGLKVISGFTELNRL 386
Query: 330 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 389
NL T I+D L++L L L+ LNL +I+D GL L +L L L L ++TD G
Sbjct: 387 NLEGTPITDAGLKQLLPLKKLEYLNLSKTEISDEGLKTLAALKNLKELQLSFTQVTDDGV 446
Query: 390 AYLRS 394
+
Sbjct: 447 KQFEA 451
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 74/234 (31%), Positives = 133/234 (56%), Gaps = 12/234 (5%)
Query: 21 TEVSLEAFRDCA----LQDL-CLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLI 75
T+V+ E +D A LQ L G+ ++D+ ++++ + +L+S++L ++++D G+
Sbjct: 224 TQVTDEGMKDIAALPNLQRLNTWGR--NISDETLELLKDK--NLVSLELDDTEISDEGMK 279
Query: 76 HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135
+LKD +N++SL + + G+E+++ + L +L R + +T +GMK +GL +L
Sbjct: 280 YLKDMTNMESLHLRRDF-VGNPGIENIQNMKKLQTLHLR-DTVVTDEGMKYLSGLTDLTY 337
Query: 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS 195
LDL+ GL +K L KL L + W TD +K +SG T L L + + +TD+
Sbjct: 338 LDLDESMIGDQGLEQIKDLKKLTRLGL-WGTETTDQGLKVISGFTELNRLNLEGTPITDA 396
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 249
G+ L L+KL LNL ++ L +L+AL +L L L+ Q++DDG ++F
Sbjct: 397 GLKQLLPLKKLEYLNLSKTEISDEGLKTLAALKNLKELQLSFTQVTDDGVKQFE 450
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 85/173 (49%), Gaps = 1/173 (0%)
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
+S G + L+L D + + + SL+ L L TD + L L+L
Sbjct: 89 MSDDGRVLILDLKGTNAQDADLKHLAGLPSLERLILWGPNFTDVSTEEIGKKNKLWFLSL 148
Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG-ISDGSLR 342
+S IGDEG+ NL+ L L+ L L T + + L+ ++ L+ ++L F I+D +
Sbjct: 149 ESTAIGDEGVKNLSDLQGLQVLSLRATNITNDALKVVAAFPELKDLDLRFNKEINDEGMP 208
Query: 343 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRSK 395
+ G+ +LK L + A Q+TD G+ + +L L L+ +G I+D L+ K
Sbjct: 209 HIKGMKNLKVLKVQATQVTDEGMKDIAALPNLQRLNTWGRNISDETLELLKDK 261
>gi|168699408|ref|ZP_02731685.1| hypothetical protein GobsU_07802 [Gemmata obscuriglobus UQM 2246]
Length = 320
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 89/252 (35%), Positives = 128/252 (50%), Gaps = 24/252 (9%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
N +TD+ MK L+ L NL SL++ VTD+G+ L L+KLT L L VT A + L+
Sbjct: 59 NKMTDAGMKELAALRNLTSLKLIGPVVTDAGLKALAPLKKLTTLQLTAAKVTDAGVKELA 118
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
+L SL L+L ++D G ++ + + L L+L ++TD L L L NL +L+L S
Sbjct: 119 SLASLTTLDLASTNVTDAGVKELAPLTRLTALDLSGTKVTDAGLKELAPLKNLVTLSLGS 178
Query: 286 CGIGDEGLVNLTGLCNLKCLELSDT------------------------QVGSSGLRHLS 321
+ L L L NLK L L DT +V +GL+ L+
Sbjct: 179 TAVTGASLKELAPLTNLKTLHLYDTKMTDAGLKELAPLTSLTTLTLAATKVTDAGLKGLT 238
Query: 322 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 381
L NL +NL T ++ L++LA L +L L+LD +TD GL LT LT L L L G
Sbjct: 239 PLKNLSDLNLGGTKVTSAGLKELAALKNLTVLDLDVTAVTDAGLKELTPLTNLKVLRLVG 298
Query: 382 ARITDSGAAYLR 393
A++T G +
Sbjct: 299 AKVTTKGVKEFK 310
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 89/249 (35%), Positives = 137/249 (55%), Gaps = 1/249 (0%)
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N +T GMK A L NL L L GL L L KL +L + +TD+ +K L
Sbjct: 59 NKMTDAGMKELAALRNLTSLKLIGPVVTDAGLKALAPLKKLTTLQLTAAK-VTDAGVKEL 117
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ L +L +L ++ + VTD+G+ L L +LT L+L G VT A L L+ L +L L+L
Sbjct: 118 ASLASLTTLDLASTNVTDAGVKELAPLTRLTALDLSGTKVTDAGLKELAPLKNLVTLSLG 177
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
++ ++ + + +LK L+L ++TD L L LT+L +L L + + D GL L
Sbjct: 178 STAVTGASLKELAPLTNLKTLHLYDTKMTDAGLKELAPLTSLTTLTLAATKVTDAGLKGL 237
Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
T L NL L L T+V S+GL+ L+ L NL ++L T ++D L++L L++LK L L
Sbjct: 238 TPLKNLSDLNLGGTKVTSAGLKELAALKNLTVLDLDVTAVTDAGLKELTPLTNLKVLRLV 297
Query: 357 ARQITDTGL 365
++T G+
Sbjct: 298 GAKVTTKGV 306
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 81/251 (32%), Positives = 122/251 (48%), Gaps = 26/251 (10%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
+++D G++ L L NLTSL +T G+KA A L L L L G+ L
Sbjct: 60 KMTDAGMKELAALRNLTSLKLI-GPVVTDAGLKALAPLKKLTTLQLTAAKVTDAGVKELA 118
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
L L +L++ N +TD+ +K L+ LT L +L +S +KVTD+G+ L L+ L L+L
Sbjct: 119 SLASLTTLDLASTN-VTDAGVKELAPLTRLTALDLSGTKVTDAGLKELAPLKNLVTLSLG 177
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK------------------------F 248
VT A L L+ L +L L+L +++D G ++
Sbjct: 178 STAVTGASLKELAPLTNLKTLHLYDTKMTDAGLKELAPLTSLTTLTLAATKVTDAGLKGL 237
Query: 249 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 308
+ + +L LNLG ++T L L L NL L+LD + D GL LT L NLK L L
Sbjct: 238 TPLKNLSDLNLGGTKVTSAGLKELAALKNLTVLDLDVTAVTDAGLKELTPLTNLKVLRLV 297
Query: 309 DTQVGSSGLRH 319
+V + G++
Sbjct: 298 GAKVTTKGVKE 308
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 75/239 (31%), Positives = 119/239 (49%), Gaps = 27/239 (11%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L S+ L G VTD+GL L L +L +++D G++ L L++LT+L N
Sbjct: 75 LTSLKLIGPVVTDAGLKALAPLKKLTTLQLT-AAKVTDAGVKELASLASLTTLDLASTN- 132
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
+T G+K A L L LDL GL L L L +L++ +T + +K L+
Sbjct: 133 VTDAGVKELAPLTRLTALDLSGTKVTDAGLKELAPLKNLVTLSL-GSTAVTGASLKELAP 191
Query: 179 LTNLKSLQI------------------------SCSKVTDSGIAYLKGLQKLTLLNLEGC 214
LTNLK+L + + +KVTD+G+ L L+ L+ LNL G
Sbjct: 192 LTNLKTLHLYDTKMTDAGLKELAPLTSLTTLTLAATKVTDAGLKGLTPLKNLSDLNLGGT 251
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
VT+A L L+AL +L L+L+ ++D G ++ + + +LKVL L ++T + + K
Sbjct: 252 KVTSAGLKELAALKNLTVLDLDVTAVTDAGLKELTPLTNLKVLRLVGAKVTTKGVKEFK 310
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 109/209 (52%), Gaps = 24/209 (11%)
Query: 204 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE 263
+ +T + + G +T A + L+AL +L L L ++D G + + + L L L +
Sbjct: 49 RPVTAVGMVGNKMTDAGMKELAALRNLTSLKLIGPVVTDAGLKALAPLKKLTTLQLTAAK 108
Query: 264 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 323
+TD + L L +L +L+L S + D G+ L L L L+LS T+V +GL+ L+ L
Sbjct: 109 VTDAGVKELASLASLTTLDLASTNVTDAGVKELAPLTRLTALDLSGTKVTDAGLKELAPL 168
Query: 324 TNLESINLSFTGISDGSLRKLAGLSSLKSLNL------DA------------------RQ 359
NL +++L T ++ SL++LA L++LK+L+L DA +
Sbjct: 169 KNLVTLSLGSTAVTGASLKELAPLTNLKTLHLYDTKMTDAGLKELAPLTSLTTLTLAATK 228
Query: 360 ITDTGLAALTSLTGLTHLDLFGARITDSG 388
+TD GL LT L L+ L+L G ++T +G
Sbjct: 229 VTDAGLKGLTPLKNLSDLNLGGTKVTSAG 257
Score = 45.1 bits (105), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 35/59 (59%)
Query: 336 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRS 394
++D +++LA L +L SL L +TD GL AL L LT L L A++TD+G L S
Sbjct: 61 MTDAGMKELAALRNLTSLKLIGPVVTDAGLKALAPLKKLTTLQLTAAKVTDAGVKELAS 119
>gi|290997932|ref|XP_002681535.1| predicted protein [Naegleria gruberi]
gi|284095159|gb|EFC48791.1| predicted protein [Naegleria gruberi]
Length = 448
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 100/382 (26%), Positives = 193/382 (50%), Gaps = 31/382 (8%)
Query: 35 DLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQI 94
D+C + K++ S+ L S+D+ G+++ D G ++ + L SL+ + +I
Sbjct: 32 DICYSRIGAEGAKFI----SEMKQLTSLDIGGNEIGDEGSKYISEMKQLTSLNIDNN-RI 86
Query: 95 SDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--------------- 139
D G + + + LTSLS NN I +G K+ + + L LD+
Sbjct: 87 GDEGAKSISEMKQLTSLSIN-NNEIGVEGAKSISEMKQLTSLDISGNGIGDKGVKFISEM 145
Query: 140 ---RCTRIHGGLVNLKG------LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS 190
+ I G + +G + +L SLNI N I D +K +S + L SL I +
Sbjct: 146 KQLKLLDIGGNEIGDEGSKYISEMKQLTSLNI-GENRIGDEGVKSISEMKQLTSLSIYNN 204
Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 250
++ D G + +++LT L++ G + + S+S + L L+++ + D+G + S+
Sbjct: 205 RIGDEGAKSISEMKQLTSLDISGNGIGDKGVKSISEMKQLTSLDISGNGIGDEGAKFISE 264
Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 310
+ LK+L++G NEI DE ++ + L SLN+ + IG EG+ +++ + L L + +
Sbjct: 265 MKQLKLLDIGGNEIGDEGSKYISEMKQLTSLNIYNNEIGVEGVKSISEMKQLTSLYIYNN 324
Query: 311 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 370
Q+G G++ +S + L+S+N+ + I D ++ ++ + L SLN+ I D G+ +++
Sbjct: 325 QIGVEGVKSISEMKQLKSLNICYNEIGDKGVKFISEMKQLISLNIGGNGIGDEGVKSISE 384
Query: 371 LTGLTHLDLFGARITDSGAAYL 392
+ LT L++ RI G+ ++
Sbjct: 385 MKQLTSLNISKNRIGAEGSKFI 406
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 89/318 (27%), Positives = 169/318 (53%), Gaps = 4/318 (1%)
Query: 43 GVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
G+ DK + I S+ L +D+ G+++ D G ++ + L SL+ +I D G++ +
Sbjct: 133 GIGDKGVKFI-SEMKQLKLLDIGGNEIGDEGSKYISEMKQLTSLNIGEN-RIGDEGVKSI 190
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
+ LTSLS NN I +G K+ + + L LD+ G+ ++ + +L SL+I
Sbjct: 191 SEMKQLTSLSIY-NNRIGDEGAKSISEMKQLTSLDISGNGIGDKGVKSISEMKQLTSLDI 249
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
N I D K +S + LK L I +++ D G Y+ +++LT LN+ + +
Sbjct: 250 SG-NGIGDEGAKFISEMKQLKLLDIGGNEIGDEGSKYISEMKQLTSLNIYNNEIGVEGVK 308
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282
S+S + L L + Q+ +G + S++ LK LN+ +NEI D+ + + + L SLN
Sbjct: 309 SISEMKQLTSLYIYNNQIGVEGVKSISEMKQLKSLNICYNEIGDKGVKFISEMKQLISLN 368
Query: 283 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 342
+ GIGDEG+ +++ + L L +S ++G+ G + +S + L S+++ + I ++
Sbjct: 369 IGGNGIGDEGVKSISEMKQLTSLNISKNRIGAEGSKFISEMKQLTSLDICYNEIGGEGVK 428
Query: 343 KLAGLSSLKSLNLDARQI 360
++ + LKSL++ +Q+
Sbjct: 429 SISEMKQLKSLSIHNQQM 446
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 79/278 (28%), Positives = 145/278 (52%), Gaps = 5/278 (1%)
Query: 117 NAITAQGMKAFAGLINLVKLDLERC-TRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMK 174
N I +G K+ + + L LD+ C +RI G + + +L SL+I N I D K
Sbjct: 12 NQIGDEGAKSISEMKQLTSLDI--CYSRIGAEGAKFISEMKQLTSLDI-GGNEIGDEGSK 68
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
+S + L SL I +++ D G + +++LT L++ + S+S + L L+
Sbjct: 69 YISEMKQLTSLNIDNNRIGDEGAKSISEMKQLTSLSINNNEIGVEGAKSISEMKQLTSLD 128
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
++ + D G + S++ LK+L++G NEI DE ++ + L SLN+ IGDEG+
Sbjct: 129 ISGNGIGDKGVKFISEMKQLKLLDIGGNEIGDEGSKYISEMKQLTSLNIGENRIGDEGVK 188
Query: 295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 354
+++ + L L + + ++G G + +S + L S+++S GI D ++ ++ + L SL+
Sbjct: 189 SISEMKQLTSLSIYNNRIGDEGAKSISEMKQLTSLDISGNGIGDKGVKSISEMKQLTSLD 248
Query: 355 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
+ I D G ++ + L LD+ G I D G+ Y+
Sbjct: 249 ISGNGIGDEGAKFISEMKQLKLLDIGGNEIGDEGSKYI 286
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 111/214 (51%)
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
+ LK L I +++ D G + +++LT L++ + A +S + L L++
Sbjct: 1 MKQLKLLDIGENQIGDEGAKSISEMKQLTSLDICYSRIGAEGAKFISEMKQLTSLDIGGN 60
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
++ D+G + S++ L LN+ N I DE + + L SL++++ IG EG +++
Sbjct: 61 EIGDEGSKYISEMKQLTSLNIDNNRIGDEGAKSISEMKQLTSLSINNNEIGVEGAKSISE 120
Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
+ L L++S +G G++ +S + L+ +++ I D + ++ + L SLN+
Sbjct: 121 MKQLTSLDISGNGIGDKGVKFISEMKQLKLLDIGGNEIGDEGSKYISEMKQLTSLNIGEN 180
Query: 359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
+I D G+ +++ + LT L ++ RI D GA +
Sbjct: 181 RIGDEGVKSISEMKQLTSLSIYNNRIGDEGAKSI 214
>gi|168698162|ref|ZP_02730439.1| hypothetical protein GobsU_01482 [Gemmata obscuriglobus UQM 2246]
Length = 295
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 104/279 (37%), Positives = 149/279 (53%), Gaps = 2/279 (0%)
Query: 92 IQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL 151
+Q++D GL+ L GL+NLT L A+T G++ A L NL LDL + GL L
Sbjct: 10 LQVTDAGLKELAGLTNLTQLIL-LGTAVTDVGLEELAPLKNLNTLDLGKTKVTDAGLKAL 68
Query: 152 KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
L L L + +TD+ +K L +LK+L + +KVTD+G+ L + LT+L L
Sbjct: 69 APLTGLTRLALG-DTGVTDAGLKELVPFKSLKTLYLFSTKVTDAGLKELGRFKNLTVLGL 127
Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 271
G VT A L L +L L L+ ++D G ++ + + +L L LG + D L
Sbjct: 128 GGTGVTDAGLRELGRFKNLTALGLSGTGVTDAGLKELAPLKNLTELGLGGTGVADVGLKE 187
Query: 272 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 331
L NL L+L S + D GL L L NL L+L TQV GLR L+GL L ++ L
Sbjct: 188 LAPFKNLAKLDLYSTKVTDAGLKELGLLKNLTLLDLGRTQVTDDGLRELTGLKALTTLIL 247
Query: 332 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 370
TG++D L++LAGL++L LNL ++TD G L S
Sbjct: 248 IGTGVTDAGLKELAGLTNLTRLNLYRTKVTDAGWKELKS 286
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 100/319 (31%), Positives = 150/319 (47%), Gaps = 39/319 (12%)
Query: 26 EAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQS 85
+ +RD + D L + G+ ++L + L G+ VTD GL L NL +
Sbjct: 5 KPWRDLQVTDAGLKELAGL------------TNLTQLILLGTAVTDVGLEELAPLKNLNT 52
Query: 86 LDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH 145
LD +++D GL+ L L+ LT L+ + +T G+K
Sbjct: 53 LDLGKT-KVTDAGLKALAPLTGLTRLAL-GDTGVTDAGLKE------------------- 91
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK 205
LV K L L + K +TD+ +K L NL L + + VTD+G+ L +
Sbjct: 92 --LVPFKSLKTLYLFSTK----VTDAGLKELGRFKNLTVLGLGGTGVTDAGLRELGRFKN 145
Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265
LT L L G VT A L L+ L +L L L ++D G ++ + +L L+L ++T
Sbjct: 146 LTALGLSGTGVTDAGLKELAPLKNLTELGLGGTGVADVGLKELAPFKNLAKLDLYSTKVT 205
Query: 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 325
D L L L NL L+L + D+GL LTGL L L L T V +GL+ L+GLTN
Sbjct: 206 DAGLKELGLLKNLTLLDLGRTQVTDDGLRELTGLKALTTLILIGTGVTDAGLKELAGLTN 265
Query: 326 LESINLSFTGISDGSLRKL 344
L +NL T ++D ++L
Sbjct: 266 LTRLNLYRTKVTDAGWKEL 284
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 55/145 (37%), Positives = 74/145 (51%), Gaps = 3/145 (2%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+L ++ LSG+ VTD+GL L NL L ++D GL+ L NL L +
Sbjct: 144 KNLTALGLSGTGVTDAGLKELAPLKNLTELGLG-GTGVADVGLKELAPFKNLAKLDL-YS 201
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+T G+K L NL LDL R GL L GL L +L I +TD+ +K L
Sbjct: 202 TKVTDAGLKELGLLKNLTLLDLGRTQVTDDGLRELTGLKALTTL-ILIGTGVTDAGLKEL 260
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLK 201
+GLTNL L + +KVTD+G LK
Sbjct: 261 AGLTNLTRLNLYRTKVTDAGWKELK 285
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 52/133 (39%), Gaps = 25/133 (18%)
Query: 43 GVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC----------- 91
GV D + +A +L + L G+ V D GL L NL LD
Sbjct: 155 GVTDAGLKELAPL-KNLTELGLGGTGVADVGLKELAPFKNLAKLDLYSTKVTDAGLKELG 213
Query: 92 ------------IQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE 139
Q++D GL L GL LT+L +T G+K AGL NL +L+L
Sbjct: 214 LLKNLTLLDLGRTQVTDDGLRELTGLKALTTLILI-GTGVTDAGLKELAGLTNLTRLNLY 272
Query: 140 RCTRIHGGLVNLK 152
R G LK
Sbjct: 273 RTKVTDAGWKELK 285
>gi|442319589|ref|YP_007359610.1| hypothetical protein MYSTI_02610 [Myxococcus stipitatus DSM 14675]
gi|441487231|gb|AGC43926.1| hypothetical protein MYSTI_02610 [Myxococcus stipitatus DSM 14675]
Length = 600
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 103/352 (29%), Positives = 169/352 (48%), Gaps = 28/352 (7%)
Query: 43 GVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
GV + + +G+SL+++ SGS + D+ L L+D + ++L + +++D GL HL
Sbjct: 103 GVPEPTLLAALVRGTSLVTLRASGSSLGDAHLGALRDFTAWEALHLD-GTRVTDAGLPHL 161
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
GL L+ + AI+ +G+ GL L ++ L + GL L +LE L++
Sbjct: 162 SGLRRLSVVRLE-ETAISDKGLAFLEGLTTLRRVGLAGTSVSAQGLRFLSAQAELEWLDL 220
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
+ TD + +L +L +S ++VTD+G+A L+ + LT
Sbjct: 221 --SDTSTDDRVLAWVSGAHLHTLILSGTQVTDAGLARLRDMPHLT--------------- 263
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282
+L L R L+D G + +L+ L+LG ++TD L+HL +LE+L
Sbjct: 264 ---------WLGLARTGLTDGGLAPIGALRALEALHLGETQVTDAGLLHLAESKSLEALV 314
Query: 283 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 342
L + GL +L GL L+ L L DT++ + +RHL GL L + LS T I+ L
Sbjct: 315 LTKTRLHGPGLQHLAGLTRLELLHLDDTRLDDAAMRHLRGLVALRELELSRTLITGAGLA 374
Query: 343 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRS 394
L LS+L+ L + +T LA L LT LDL + A++ S
Sbjct: 375 SLDALSALERLGVSGLAVTADALAVLQKTERLTRLDLSHTPVGPEALAHVPS 426
Score = 121 bits (303), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 119/356 (33%), Positives = 172/356 (48%), Gaps = 31/356 (8%)
Query: 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
G+ L ++ LSG+ VTD+GL L+D +L L ++DGGL + L L +L
Sbjct: 235 GAHLHTLILSGTQVTDAGLARLRDMPHLTWLGLART-GLTDGGLAPIGALRALEALHLGE 293
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMK 174
+T G+ A +L L L + TR+HG GL +L GL +LE L++ + D+ M+
Sbjct: 294 TQ-VTDAGLLHLAESKSLEALVLTK-TRLHGPGLQHLAGLTRLELLHLD-DTRLDDAAMR 350
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
L GL L+ L++S + +T +G+A L L L L + G VTA L L L L+
Sbjct: 351 HLRGLVALRELELSRTLITGAGLASLDALSALERLGVSGLAVTADALAVLQKTERLTRLD 410
Query: 235 LNRCQLSDDGCEKFSKIGS-LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
L+ + G E + + S L+ L+L DE L L+ L+ L+SL + + D GL
Sbjct: 411 LSHTPV---GPEALAHVPSGLRELDLSRTAFNDEWLPSLRRLSRLQSLRAERTLLTDLGL 467
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
L L L L LS T V SGL HL L +L ++L T + L GL+ L L
Sbjct: 468 GQLGELTELAALHLSGTLVNGSGLAHLQRLPHLAHLDLGATWLEAHYTPALQGLTRLTWL 527
Query: 354 NL------DAR----------------QITDTGLAALTSLTGLTHLDLFGARITDS 387
+L DA +TD GL +L SL L LDL G +TD+
Sbjct: 528 SLARGRLGDAALGHLPPGLHTLYLTRTGVTDAGLDSLRSLPHLRQLDLRGTAVTDA 583
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 81/176 (46%), Gaps = 5/176 (2%)
Query: 50 DVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLT 109
+ +A S L +DLS + D L L+ S LQSL + ++D GL L L+ L
Sbjct: 419 EALAHVPSGLRELDLSRTAFNDEWLPSLRRLSRLQSLRAERTL-LTDLGLGQLGELTELA 477
Query: 110 SLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCIT 169
+L + G+ L +L LDL L+GL +L L++ +
Sbjct: 478 ALHLS-GTLVNGSGLAHLQRLPHLAHLDLGATWLEAHYTPALQGLTRLTWLSLA-RGRLG 535
Query: 170 DSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
D+ + L L +L ++ + VTD+G+ L+ L L L+L G VT A D+LS
Sbjct: 536 DAALGHLP--PGLHTLYLTRTGVTDAGLDSLRSLPHLRQLDLRGTAVTDAARDALS 589
Score = 42.4 bits (98), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 52/103 (50%), Gaps = 3/103 (2%)
Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
LV T L L+ S + +G + L L T E+++L T ++D L L+GL L
Sbjct: 113 LVRGTSLVTLRA---SGSSLGDAHLGALRDFTAWEALHLDGTRVTDAGLPHLSGLRRLSV 169
Query: 353 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRSK 395
+ L+ I+D GLA L LT L + L G ++ G +L ++
Sbjct: 170 VRLEETAISDKGLAFLEGLTTLRRVGLAGTSVSAQGLRFLSAQ 212
>gi|168701995|ref|ZP_02734272.1| hypothetical protein GobsU_20883 [Gemmata obscuriglobus UQM 2246]
Length = 684
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 117/417 (28%), Positives = 174/417 (41%), Gaps = 85/417 (20%)
Query: 30 DCALQDLCLGQYPGVNDKWMD---------VIASQGSSLLSVDLSGSDVTDSGLIHLKDC 80
D L DL +P + W+ +A + +L +DLSG+ VT GL HLK
Sbjct: 101 DAGLADL--NAFPLLTSLWVQGTTVSDAGLAVARELPALTHIDLSGTKVTGPGLAHLKGL 158
Query: 81 -------SNLQSLDFNFC---------------IQISDGGLEHLRGLSNLTSLSFRRNNA 118
S D N C ++D GL HL L L +L R+ A
Sbjct: 159 KGLTLLLSGTALTDANLCYLKGLTGVVELSLSDTPLTDAGLSHLHDLKALGTLDVRKTRA 218
Query: 119 ITA---------QGMKAFAGLINLVKLDLERCTR------------------IHGGLVNL 151
A G + + LD+ R I
Sbjct: 219 TPASLAELHKSVPGCRIRDSAGDRPPLDVNRLAAEWVLSVGGSVGVSGQPRDIRAAADLP 278
Query: 152 KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
+G + L +N+ + D D+ L+G T L L + ++VTD+ + YLK L +L L+L
Sbjct: 279 QGPLALARVNLS-DRSVKDDDLGRLAGCTGLTELVLHETRVTDAALGYLKNLARLQFLSL 337
Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 271
G VT D G + + SL L+L ++T+ LVH
Sbjct: 338 TGTDVT------------------------DAGLARIRERKSLTTLHLSSTKVTNAGLVH 373
Query: 272 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 331
L GL L ++LD G+ D GLV+L GL +LK L LS T+V GL H L+++ L
Sbjct: 374 LAGLAGLSHIHLDGTGVSDAGLVHLKGLTDLKTLGLSRTRVLGPGLAHTHSWKRLDALYL 433
Query: 332 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 388
+ TG++D + L+ +L+ L D +TD G+A + LTGL L+L + D+G
Sbjct: 434 TNTGVTDEAFAHLSPHHTLRHLGADGTGLTDAGMAHVRHLTGLISLNLSDTAVGDAG 490
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 110/387 (28%), Positives = 166/387 (42%), Gaps = 56/387 (14%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
+L + L G+ VTD+GL HLK SNL L+ + ++D GL L LTSL + +
Sbjct: 64 ALTRIILHGTKVTDAGLAHLKGLSNLAHLNLAYS-GVTDAGLADLNAFPLLTSL-WVQGT 121
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
++ G+ L L +DL GL +LK + +TD+++ L
Sbjct: 122 TVSDAGLAVARELPALTHIDLSGTKVTGPGLAHLK--GLKGLTLLLSGTALTDANLCYLK 179
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS----------AL 227
GLT + L +S + +TD+G+++L L+ L L++ T A L L +
Sbjct: 180 GLTGVVELSLSDTPLTDAGLSHLHDLKALGTLDVRKTRATPASLAELHKSVPGCRIRDSA 239
Query: 228 GSLFYLNLNRC------------------------------------------QLSDDGC 245
G L++NR + DD
Sbjct: 240 GDRPPLDVNRLAAEWVLSVGGSVGVSGQPRDIRAAADLPQGPLALARVNLSDRSVKDDDL 299
Query: 246 EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 305
+ + L L L +TD L +LK L L+ L+L + D GL + +L L
Sbjct: 300 GRLAGCTGLTELVLHETRVTDAALGYLKNLARLQFLSLTGTDVTDAGLARIRERKSLTTL 359
Query: 306 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 365
LS T+V ++GL HL+GL L I+L TG+SD L L GL+ LK+L L ++ GL
Sbjct: 360 HLSSTKVTNAGLVHLAGLAGLSHIHLDGTGVSDAGLVHLKGLTDLKTLGLSRTRVLGPGL 419
Query: 366 AALTSLTGLTHLDLFGARITDSGAAYL 392
A S L L L +TD A+L
Sbjct: 420 AHTHSWKRLDALYLTNTGVTDEAFAHL 446
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 97/362 (26%), Positives = 154/362 (42%), Gaps = 61/362 (16%)
Query: 84 QSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTR 143
Q D + G L R NL+ S + ++ + AG L +L L
Sbjct: 267 QPRDIRAAADLPQGPLALAR--VNLSDRSVKDDD------LGRLAGCTGLTELVLHETRV 318
Query: 144 IHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGL 203
L LK L +L+ L++ + +TD+ + + +L +L +S +KVT++G+ +L GL
Sbjct: 319 TDAALGYLKNLARLQFLSLTGTD-VTDAGLARIRERKSLTTLHLSSTKVTNAGLVHLAGL 377
Query: 204 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE 263
L+ ++L+G V+ A L L L L L L+R ++ G L L L
Sbjct: 378 AGLSHIHLDGTGVSDAGLVHLKGLTDLKTLGLSRTRVLGPGLAHTHSWKRLDALYLTNTG 437
Query: 264 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL--- 320
+TDE HL L L D G+ D G+ ++ L L L LSDT VG +GL L
Sbjct: 438 VTDEAFAHLSPHHTLRHLGADGTGLTDAGMAHVRHLTGLISLNLSDTAVGDAGLMQLGSN 497
Query: 321 SGLTNLESINLSFT-----------------------------------GISDGSLRKLA 345
+G T+L N T ++ G +++
Sbjct: 498 AGPTHLTVRNTKVTLRGLHAFHATGPWRTVTWDGGQLGPTEADRSAARWALAAGGRLRVS 557
Query: 346 GLSS--------------LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
G+ + + L L+ ++DT LAAL LTG++ LDL G+ IT+ G A+
Sbjct: 558 GVPNEIVAAGELPKRKFVVTELALNGLAVSDTELAALKYLTGMSRLDLAGSAITNDGLAH 617
Query: 392 LR 393
L+
Sbjct: 618 LK 619
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 91/359 (25%), Positives = 154/359 (42%), Gaps = 56/359 (15%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
L+G+DVTD+GL +++ +L +L + ++++ GL HL GL+ L+ + ++ G
Sbjct: 337 LTGTDVTDAGLARIRERKSLTTLHLS-STKVTNAGLVHLAGLAGLSHIHLD-GTGVSDAG 394
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
+ GL +L L L R + GL + +L++L + +TD LS L+
Sbjct: 395 LVHLKGLTDLKTLGLSRTRVLGPGLAHTHSWKRLDALYLT-NTGVTDEAFAHLSPHHTLR 453
Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
L + +TD+G+A+++ L L LNL V A L L + +L + +++
Sbjct: 454 HLGADGTGLTDAGMAHVRHLTGLISLNLSDTAVGDAGLMQLGSNAGPTHLTVRNTKVTLR 513
Query: 244 GCEKFSKIGSLKVL-----NLGFNEITDECL---------VHLKGLTN------------ 277
G F G + + LG E + + G+ N
Sbjct: 514 GLHAFHATGPWRTVTWDGGQLGPTEADRSAARWALAAGGRLRVSGVPNEIVAAGELPKRK 573
Query: 278 --LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 335
+ L L+ + D L L L + L+L+ + + + GL HL GLT L + LS T
Sbjct: 574 FVVTELALNGLAVSDTELAALKYLTGMSRLDLAGSAITNDGLAHLKGLTGLRRLGLSETR 633
Query: 336 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRS 394
++D AGL ++K+L LT LDL G +T GA R+
Sbjct: 634 VTD------AGLDAIKALP-------------------LTELDLLGTAVTQKGAEGFRA 667
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 76/280 (27%), Positives = 118/280 (42%), Gaps = 53/280 (18%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
+TD+ + L GL+NL L ++ S VTD+G+A L LT L ++G V+ A L L
Sbjct: 75 VTDAGLAHLKGLSNLAHLNLAYSGVTDAGLADLNAFPLLTSLWVQGTTVSDAGLAVAREL 134
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
+L +++L+ +++ G + L +L G +TD L +LKGLT + L+L
Sbjct: 135 PALTHIDLSGTKVTGPGLAHLKGLKGLTLLLSG-TALTDANLCYLKGLTGVVELSLSDTP 193
Query: 288 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL--------------------------- 320
+ D GL +L L L L++ T+ + L L
Sbjct: 194 LTDAGLSHLHDLKALGTLDVRKTRATPASLAELHKSVPGCRIRDSAGDRPPLDVNRLAAE 253
Query: 321 -------------------------SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355
G L +NLS + D L +LAG + L L L
Sbjct: 254 WVLSVGGSVGVSGQPRDIRAAADLPQGPLALARVNLSDRSVKDDDLGRLAGCTGLTELVL 313
Query: 356 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRSK 395
++TD L L +L L L L G +TD+G A +R +
Sbjct: 314 HETRVTDAALGYLKNLARLQFLSLTGTDVTDAGLARIRER 353
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 77/280 (27%), Positives = 113/280 (40%), Gaps = 53/280 (18%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
+ D+D+ L L + + +KVTD+G+A+LKGL L LNL VT A L L+
Sbjct: 49 RAVADADLARLKDCQALTRIILHGTKVTDAGLAHLKGLSNLAHLNLAYSGVTDAGLADLN 108
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
A L L + +SD G ++ +L ++L ++T L HLK +L L
Sbjct: 109 AFPLLTSLWVQGTTVSDAGLAVARELPALTHIDLSGTKVTGPGLAHLK-GLKGLTLLLSG 167
Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL- 344
+ D L L GL + L LSDT + +GL HL L L ++++ T + SL +L
Sbjct: 168 TALTDANLCYLKGLTGVVELSLSDTPLTDAGLSHLHDLKALGTLDVRKTRATPASLAELH 227
Query: 345 ---------------------------------------------------AGLSSLKSL 353
G +L +
Sbjct: 228 KSVPGCRIRDSAGDRPPLDVNRLAAEWVLSVGGSVGVSGQPRDIRAAADLPQGPLALARV 287
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
NL R + D L L TGLT L L R+TD+ YL+
Sbjct: 288 NLSDRSVKDDDLGRLAGCTGLTELVLHETRVTDAALGYLK 327
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 60/114 (52%)
Query: 278 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 337
L + +L + D L L L + L T+V +GL HL GL+NL +NL+++G++
Sbjct: 41 LTAADLTDRAVADADLARLKDCQALTRIILHGTKVTDAGLAHLKGLSNLAHLNLAYSGVT 100
Query: 338 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
D L L L SL + ++D GLA L LTH+DL G ++T G A+
Sbjct: 101 DAGLADLNAFPLLTSLWVQGTTVSDAGLAVARELPALTHIDLSGTKVTGPGLAH 154
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 92/211 (43%), Gaps = 25/211 (11%)
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
L + ++ V D+ +A LK Q LT + L G VT A L L L +L +LNL
Sbjct: 41 LTAADLTDRAVADADLARLKDCQALTRIILHGTKVTDAGLAHLKGLSNLAHLNL------ 94
Query: 242 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN 301
++ +TD L L L SL + + D GL L
Sbjct: 95 ------------------AYSGVTDAGLADLNAFPLLTSLWVQGTTVSDAGLAVARELPA 136
Query: 302 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 361
L ++LS T+V GL HL ++ LS T ++D +L L GL+ + L+L +T
Sbjct: 137 LTHIDLSGTKVTGPGLAHLK-GLKGLTLLLSGTALTDANLCYLKGLTGVVELSLSDTPLT 195
Query: 362 DTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
D GL+ L L L LD+ R T + A L
Sbjct: 196 DAGLSHLHDLKALGTLDVRKTRATPASLAEL 226
>gi|149174540|ref|ZP_01853166.1| leucine-rich repeat domain protein [Planctomyces maris DSM 8797]
gi|148846650|gb|EDL60987.1| leucine-rich repeat domain protein [Planctomyces maris DSM 8797]
Length = 309
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 93/262 (35%), Positives = 145/262 (55%), Gaps = 2/262 (0%)
Query: 107 NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCN 166
N++ +SF + + A G+ L L KLDL G+V+LK L L + +
Sbjct: 39 NISQVSFSGSKLVDA-GLVYLGRLSKLRKLDLSGSKVTDDGMVHLKSLKSLREITLHGI- 96
Query: 167 CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 226
++DS + L+NL+ L +S +KVTD+G+ +LK L L L L G +TA L LS
Sbjct: 97 PVSDSGLAEFKKLSNLEILNLSRTKVTDAGLKHLKSLDSLKELFLTGLEITADGLAHLSG 156
Query: 227 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 286
L SL L L+ Q++DD + L+VL L +ITDE L +KGLT L+ L L +
Sbjct: 157 LKSLETLGLSETQITDDALAHLKTLKKLRVLLLRDTQITDEGLKQIKGLTRLQRLWLRNT 216
Query: 287 GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG 346
I D+GL L + +++ LEL+DTQ+ ++G+ + L N+ +NL T +SD + L
Sbjct: 217 QITDDGLKYLIKMKDMEWLELNDTQITNAGISEIKVLENIVDMNLRNTDVSDKCITSLKK 276
Query: 347 LSSLKSLNLDARQITDTGLAAL 368
+ +L +L +D +IT+ G+A L
Sbjct: 277 MKNLGTLYIDGTEITEEGIAKL 298
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 78/219 (35%), Positives = 123/219 (56%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
+ D+ + L L+ L+ L +S SKVTD G+ +LK L+ L + L G PV+ + L L
Sbjct: 50 LVDAGLVYLGRLSKLRKLDLSGSKVTDDGMVHLKSLKSLREITLHGIPVSDSGLAEFKKL 109
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
+L LNL+R +++D G + + SLK L L EIT + L HL GL +LE+L L
Sbjct: 110 SNLEILNLSRTKVTDAGLKHLKSLDSLKELFLTGLEITADGLAHLSGLKSLETLGLSETQ 169
Query: 288 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 347
I D+ L +L L L+ L L DTQ+ GL+ + GLT L+ + L T I+D L+ L +
Sbjct: 170 ITDDALAHLKTLKKLRVLLLRDTQITDEGLKQIKGLTRLQRLWLRNTQITDDGLKYLIKM 229
Query: 348 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
++ L L+ QIT+ G++ + L + ++L ++D
Sbjct: 230 KDMEWLELNDTQITNAGISEIKVLENIVDMNLRNTDVSD 268
Score = 114 bits (285), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 79/213 (37%), Positives = 122/213 (57%)
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
N+ + S SK+ D+G+ YL L KL L+L G VT + L +L SL + L+ +
Sbjct: 39 NISQVSFSGSKLVDAGLVYLGRLSKLRKLDLSGSKVTDDGMVHLKSLKSLREITLHGIPV 98
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
SD G +F K+ +L++LNL ++TD L HLK L +L+ L L I +GL +L+GL
Sbjct: 99 SDSGLAEFKKLSNLEILNLSRTKVTDAGLKHLKSLDSLKELFLTGLEITADGLAHLSGLK 158
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
+L+ L LS+TQ+ L HL L L + L T I+D L+++ GL+ L+ L L QI
Sbjct: 159 SLETLGLSETQITDDALAHLKTLKKLRVLLLRDTQITDEGLKQIKGLTRLQRLWLRNTQI 218
Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
TD GL L + + L+L +IT++G + ++
Sbjct: 219 TDDGLKYLIKMKDMEWLELNDTQITNAGISEIK 251
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 79/240 (32%), Positives = 127/240 (52%), Gaps = 3/240 (1%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
S L +DLSGS VTD G++HLK +L+ + + I +SD GL + LSNL L+ R
Sbjct: 62 SKLRKLDLSGSKVTDDGMVHLKSLKSLREITLH-GIPVSDSGLAEFKKLSNLEILNLSRT 120
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+T G+K L +L +L L GL +L GL LE+L + ITD + L
Sbjct: 121 K-VTDAGLKHLKSLDSLKELFLTGLEITADGLAHLSGLKSLETLGLSETQ-ITDDALAHL 178
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
L L+ L + +++TD G+ +KGL +L L L +T L L + + +L LN
Sbjct: 179 KTLKKLRVLLLRDTQITDEGLKQIKGLTRLQRLWLRNTQITDDGLKYLIKMKDMEWLELN 238
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q+++ G + + ++ +NL +++D+C+ LK + NL +L +D I +EG+ L
Sbjct: 239 DTQITNAGISEIKVLENIVDMNLRNTDVSDKCITSLKKMKNLGTLYIDGTEITEEGIAKL 298
Score = 94.4 bits (233), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 79/260 (30%), Positives = 136/260 (52%), Gaps = 3/260 (1%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
V SGS + D+GL++L S L+ LD + +++D G+ HL+ L +L ++ ++
Sbjct: 43 VSFSGSKLVDAGLVYLGRLSKLRKLDLSGS-KVTDDGMVHLKSLKSLREITL-HGIPVSD 100
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
G+ F L NL L+L R GL +LK L L+ L + D + LSGL +
Sbjct: 101 SGLAEFKKLSNLEILNLSRTKVTDAGLKHLKSLDSLKELFLTGLEITADG-LAHLSGLKS 159
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
L++L +S +++TD +A+LK L+KL +L L +T L + L L L L Q++
Sbjct: 160 LETLGLSETQITDDALAHLKTLKKLRVLLLRDTQITDEGLKQIKGLTRLQRLWLRNTQIT 219
Query: 242 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN 301
DDG + K+ ++ L L +IT+ + +K L N+ +NL + + D+ + +L + N
Sbjct: 220 DDGLKYLIKMKDMEWLELNDTQITNAGISEIKVLENIVDMNLRNTDVSDKCITSLKKMKN 279
Query: 302 LKCLELSDTQVGSSGLRHLS 321
L L + T++ G+ L
Sbjct: 280 LGTLYIDGTEITEEGIAKLE 299
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 62/189 (32%), Positives = 94/189 (49%), Gaps = 24/189 (12%)
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
G++ ++ + +L D G ++ L+ L+L +++TD+ +VHLK L +L + L
Sbjct: 38 GNISQVSFSGSKLVDAGLVYLGRLSKLRKLDLSGSKVTDDGMVHLKSLKSLREITLHGIP 97
Query: 288 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 347
+ D GL L NL+ L LS T+V +GL+HL L +L+ + L+ I+ L L+GL
Sbjct: 98 VSDSGLAEFKKLSNLEILNLSRTKVTDAGLKHLKSLDSLKELFLTGLEITADGLAHLSGL 157
Query: 348 SSLKSLNL-------DA-----------------RQITDTGLAALTSLTGLTHLDLFGAR 383
SL++L L DA QITD GL + LT L L L +
Sbjct: 158 KSLETLGLSETQITDDALAHLKTLKKLRVLLLRDTQITDEGLKQIKGLTRLQRLWLRNTQ 217
Query: 384 ITDSGAAYL 392
ITD G YL
Sbjct: 218 ITDDGLKYL 226
>gi|149175912|ref|ZP_01854530.1| leucine-rich repeat domain protein [Planctomyces maris DSM 8797]
gi|148845359|gb|EDL59704.1| leucine-rich repeat domain protein [Planctomyces maris DSM 8797]
Length = 495
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 90/247 (36%), Positives = 134/247 (54%), Gaps = 6/247 (2%)
Query: 148 LVNLKGLMKLESLNIKWC--NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK 205
LV++ L ++ SL W ITD + L L L+SL I+ ++++D+GI L + K
Sbjct: 69 LVHVSKLTEVTSL---WIIGTEITDQGLTLLRDLQGLQSLYITNNQISDAGIQQLPQV-K 124
Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265
L L L G +T L S L LN+ + +SD G + S+ L+ L L +IT
Sbjct: 125 LVELTLGGTKITDESLKHFSNSSDLNTLNVGKTAVSDRGLQYVSQFKKLERLYLHETQIT 184
Query: 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 325
DE + ++GL NL+SL L+ I D GL L L L+ L L++T++ +GL+ L LT
Sbjct: 185 DEGMQQIQGLKNLKSLMLNETEITDSGLTALRNLDQLEELFLNETKITGAGLKKLERLTR 244
Query: 326 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
L + LS T I+D ++ L L +LK L LD Q+TD GL+ + L LD+ +IT
Sbjct: 245 LSKLILSETDITDADIKYLKELPALKRLYLDQTQLTDDGLSQIVDFPSLEMLDVSNNQIT 304
Query: 386 DSGAAYL 392
D+G YL
Sbjct: 305 DAGLIYL 311
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 126/421 (29%), Positives = 218/421 (51%), Gaps = 38/421 (9%)
Query: 3 PRDISQQIFNE----LVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSS 58
PRD + Q + ++++ T+ S D + + L + P V+D + V S+ +
Sbjct: 21 PRDKAIQAIRDAGGKVIFAPG-TDESTGNLGDKTVSMVMLNEIP-VDDSIL-VHVSKLTE 77
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
+ S+ + G+++TD GL L+D LQSL + QISD G++ L + L L+
Sbjct: 78 VTSLWIIGTEITDQGLTLLRDLQGLQSL-YITNNQISDAGIQQLPQVK-LVELTL-GGTK 134
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
IT + +K F+ +L L++ + GL + KLE L + ITD M+ + G
Sbjct: 135 ITDESLKHFSNSSDLNTLNVGKTAVSDRGLQYVSQFKKLERLYLHETQ-ITDEGMQQIQG 193
Query: 179 LTNLKSLQISCSKVTDSGI---------------------AYLKGLQKLTLLN---LEGC 214
L NLKSL ++ +++TDSG+ A LK L++LT L+ L
Sbjct: 194 LKNLKSLMLNETEITDSGLTALRNLDQLEELFLNETKITGAGLKKLERLTRLSKLILSET 253
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH-LK 273
+T A + L L +L L L++ QL+DDG + SL++L++ N+ITD L++ L+
Sbjct: 254 DITDADIKYLKELPALKRLYLDQTQLTDDGLSQIVDFPSLEMLDVSNNQITDAGLIYLLQ 313
Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLCNLK-CLELSDTQVGSSGLRHLSGLTNLESINLS 332
S+NL I D GL ++ G +++ L+LS+T+V +GL++L+ + L ++L+
Sbjct: 314 NGKQWSSINLSGNQITDAGL-SILGKSHIELTLDLSNTEVTDAGLKYLTSMNMLFGLSLN 372
Query: 333 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
ISD ++ L L +LKS+ L+ ITD L + + + + L L ++TD+G + L
Sbjct: 373 NCQISDQGVQTLMELPALKSIQLNGTDITDCSLEIIKTKSDMLVLYLDDTKLTDAGFSQL 432
Query: 393 R 393
+
Sbjct: 433 Q 433
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 106/352 (30%), Positives = 171/352 (48%), Gaps = 33/352 (9%)
Query: 20 LTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLK 78
+T+ SL+ F + + L L +G+ V+D+ + + SQ L + L + +TD G+ ++
Sbjct: 135 ITDESLKHFSNSSDLNTLNVGK-TAVSDRGLQYV-SQFKKLERLYLHETQITDEGMQQIQ 192
Query: 79 DCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL 138
NL+SL N +I+D GL LR L L L F IT G+K L L KL L
Sbjct: 193 GLKNLKSLMLNET-EITDSGLTALRNLDQLEEL-FLNETKITGAGLKKLERLTRLSKLIL 250
Query: 139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIA 198
+ LK L L+ L + +TD + + +L+ L +S +++TD+G+
Sbjct: 251 SETDITDADIKYLKELPALKRLYLDQTQ-LTDDGLSQIVDFPSLEMLDVSNNQITDAGLI 309
Query: 199 YL--------------------------KGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
YL K +LTL +L VT A L L+++ LF
Sbjct: 310 YLLQNGKQWSSINLSGNQITDAGLSILGKSHIELTL-DLSNTEVTDAGLKYLTSMNMLFG 368
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
L+LN CQ+SD G + ++ +LK + L +ITD L +K +++ L LD + D G
Sbjct: 369 LSLNNCQISDQGVQTLMELPALKSIQLNGTDITDCSLEIIKTKSDMLVLYLDDTKLTDAG 428
Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 344
L GL L+ L L++T V + L+ + +T L +NL T +SD +++KL
Sbjct: 429 FSQLQGLTGLQILSLNNTAVTDASLKFFNKMTKLFELNLKQTAVSDAAVQKL 480
Score = 111 bits (277), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 99/344 (28%), Positives = 169/344 (49%), Gaps = 4/344 (1%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S S L ++++ + V+D GL ++ L+ L + QI+D G++ ++GL NL SL
Sbjct: 144 SNSSDLNTLNVGKTAVSDRGLQYVSQFKKLERL-YLHETQITDEGMQQIQGLKNLKSLML 202
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
IT G+ A L L +L L GL L+ L +L L + + ITD+D+
Sbjct: 203 NETE-ITDSGLTALRNLDQLEELFLNETKITGAGLKKLERLTRLSKLILSETD-ITDADI 260
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY- 232
K L L LK L + +++TD G++ + L +L++ +T A L L G +
Sbjct: 261 KYLKELPALKRLYLDQTQLTDDGLSQIVDFPSLEMLDVSNNQITDAGLIYLLQNGKQWSS 320
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
+NL+ Q++D G K L+L E+TD L +L + L L+L++C I D+G
Sbjct: 321 INLSGNQITDAGLSILGKSHIELTLDLSNTEVTDAGLKYLTSMNMLFGLSLNNCQISDQG 380
Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
+ L L LK ++L+ T + L + +++ + L T ++D +L GL+ L+
Sbjct: 381 VQTLMELPALKSIQLNGTDITDCSLEIIKTKSDMLVLYLDDTKLTDAGFSQLQGLTGLQI 440
Query: 353 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRSKF 396
L+L+ +TD L +T L L+L ++D+ L K
Sbjct: 441 LSLNNTAVTDASLKFFNKMTKLFELNLKQTAVSDAAVQKLLKKI 484
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 79/160 (49%), Gaps = 1/160 (0%)
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
LN + D SK+ + L + EITD+ L L+ L L+SL + + I D G+
Sbjct: 59 LNEIPVDDSILVHVSKLTEVTSLWIIGTEITDQGLTLLRDLQGLQSLYITNNQISDAGIQ 118
Query: 295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 354
L + L L L T++ L+H S ++L ++N+ T +SD L+ ++ L+ L
Sbjct: 119 QLPQV-KLVELTLGGTKITDESLKHFSNSSDLNTLNVGKTAVSDRGLQYVSQFKKLERLY 177
Query: 355 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRS 394
L QITD G+ + L L L L ITDSG LR+
Sbjct: 178 LHETQITDEGMQQIQGLKNLKSLMLNETEITDSGLTALRN 217
>gi|421611905|ref|ZP_16053033.1| hypothetical protein RBSH_02839 [Rhodopirellula baltica SH28]
gi|408497310|gb|EKK01841.1| hypothetical protein RBSH_02839 [Rhodopirellula baltica SH28]
Length = 455
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 102/320 (31%), Positives = 152/320 (47%), Gaps = 29/320 (9%)
Query: 42 PGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEH 101
PG++D M+ + S L + L+ + +TD L ++Q L F ++D GLE
Sbjct: 118 PGIDDAGMENLTSL-PKLKYLTLADTAITDETLKTAGKLDSVQGL-FLRRTGVTDEGLEL 175
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
L GLS L ++ R +N I GM + A + L + LE+ GLV L L L+S+N
Sbjct: 176 LTGLSKLRAIDLRNSN-IGDAGMDSLAKIKTLADVQLEKSKVTDEGLVKLTSL-PLKSIN 233
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA-- 219
+C I MK L L++LQ SK+ D +A LKGL KL L + GC VT
Sbjct: 234 FNYCTTINGPTMKMLGQTPTLENLQGDYSKINDESMAELKGLSKLKRLRIRGCDVTGEGI 293
Query: 220 ----------------------CLDSLSALGSLFYLNLNRCQL-SDDGCEKFSKIGSLKV 256
L +S L ++ Y++++ C+L S +G + ++ L
Sbjct: 294 QHIAGNKALARFELRDSSVDDDGLKVISQLPAVTYVDISECRLASPEGIAQLGELTGLTY 353
Query: 257 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 316
L L + DE L L NLE LNL S + DE L L + LK L ++ TQ+G
Sbjct: 354 LGLWETKTNDETLSGFGDLINLEELNLKSTSVTDESLPVLMKMIKLKTLNVAGTQLGDDS 413
Query: 317 LRHLSGLTNLESINLSFTGI 336
L+ L NL+S+N++ T I
Sbjct: 414 FLELAKLPNLKSMNVANTSI 433
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 88/318 (27%), Positives = 148/318 (46%), Gaps = 6/318 (1%)
Query: 71 DSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL 130
+ L HL N FN I D G+E+L L L L+ + AIT + +K L
Sbjct: 98 EESLQHLSGIPNTTKATFN-GPGIDDAGMENLTSLPKLKYLTLA-DTAITDETLKTAGKL 155
Query: 131 INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS 190
++ L L R GL L GL KL +++++ N I D+ M L+ + L +Q+ S
Sbjct: 156 DSVQGLFLRRTGVTDEGLELLTGLSKLRAIDLRNSN-IGDAGMDSLAKIKTLADVQLEKS 214
Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 249
KVTD G+ L L L +N C + + L +L L + +++D+ +
Sbjct: 215 KVTDEGLVKLTSL-PLKSINFNYCTTINGPTMKMLGQTPTLENLQGDYSKINDESMAELK 273
Query: 250 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 309
+ LK L + ++T E + H+ G L L + D+GL ++ L + +++S+
Sbjct: 274 GLSKLKRLRIRGCDVTGEGIQHIAGNKALARFELRDSSVDDDGLKVISQLPAVTYVDISE 333
Query: 310 TQVGSS-GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 368
++ S G+ L LT L + L T +D +L L +L+ LNL + +TD L L
Sbjct: 334 CRLASPEGIAQLGELTGLTYLGLWETKTNDETLSGFGDLINLEELNLKSTSVTDESLPVL 393
Query: 369 TSLTGLTHLDLFGARITD 386
+ L L++ G ++ D
Sbjct: 394 MKMIKLKTLNVAGTQLGD 411
Score = 74.7 bits (182), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 103/220 (46%), Gaps = 2/220 (0%)
Query: 170 DSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 229
+ ++ LSG+ N + + D+G+ L L KL L L +T L + L S
Sbjct: 98 EESLQHLSGIPNTTKATFNGPGIDDAGMENLTSLPKLKYLTLADTAITDETLKTAGKLDS 157
Query: 230 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 289
+ L L R ++D+G E + + L+ ++L + I D + L + L + L+ +
Sbjct: 158 VQGLFLRRTGVTDEGLELLTGLSKLRAIDLRNSNIGDAGMDSLAKIKTLADVQLEKSKVT 217
Query: 290 DEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 348
DEGLV LT L LK + + T + ++ L LE++ ++ I+D S+ +L GLS
Sbjct: 218 DEGLVKLTSLP-LKSINFNYCTTINGPTMKMLGQTPTLENLQGDYSKINDESMAELKGLS 276
Query: 349 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 388
LK L + +T G+ + L +L + + D G
Sbjct: 277 KLKRLRIRGCDVTGEGIQHIAGNKALARFELRDSSVDDDG 316
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 68/129 (52%)
Query: 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 325
+E L HL G+ N + GI D G+ NLT L LK L L+DT + L+ L +
Sbjct: 98 EESLQHLSGIPNTTKATFNGPGIDDAGMENLTSLPKLKYLTLADTAITDETLKTAGKLDS 157
Query: 326 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
++ + L TG++D L L GLS L++++L I D G+ +L + L + L +++T
Sbjct: 158 VQGLFLRRTGVTDEGLELLTGLSKLRAIDLRNSNIGDAGMDSLAKIKTLADVQLEKSKVT 217
Query: 386 DSGAAYLRS 394
D G L S
Sbjct: 218 DEGLVKLTS 226
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 95/226 (42%), Gaps = 39/226 (17%)
Query: 192 VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI 251
V + IA KG + +L +L G P T N + D G E + +
Sbjct: 85 VVEFSIANQKGGIEESLQHLSGIPNTTKA-------------TFNGPGIDDAGMENLTSL 131
Query: 252 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 311
LK L L ITDE L L +++ L L G+ DEGL LTGL L+ ++L ++
Sbjct: 132 PKLKYLTLADTAITDETLKTAGKLDSVQGLFLRRTGVTDEGLELLTGLSKLRAIDLRNSN 191
Query: 312 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL---------------- 355
+G +G+ L+ + L + L + ++D L KL L LKS+N
Sbjct: 192 IGDAGMDSLAKIKTLADVQLEKSKVTDEGLVKLTSL-PLKSINFNYCTTINGPTMKMLGQ 250
Query: 356 ---------DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
D +I D +A L L+ L L + G +T G ++
Sbjct: 251 TPTLENLQGDYSKINDESMAELKGLSKLKRLRIRGCDVTGEGIQHI 296
>gi|149177419|ref|ZP_01856023.1| leucine-rich repeat domain protein [Planctomyces maris DSM 8797]
gi|148843752|gb|EDL58111.1| leucine-rich repeat domain protein [Planctomyces maris DSM 8797]
Length = 375
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 97/285 (34%), Positives = 154/285 (54%), Gaps = 3/285 (1%)
Query: 85 SLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI 144
+DF +I D L+ + GLS+L SL IT +++ + L LDL C+
Sbjct: 76 EVDFR-GTKIDDAALKEIAGLSHLRSL-LLNETPITDAALESVGKVTTLENLDLRNCSLN 133
Query: 145 HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQ 204
+ + L GL KL++L + + I D M ++ LTNLK+L + V+ G++ LK L
Sbjct: 134 NKAISYLTGLSKLKALRLSGNSDIDDDAMADINQLTNLKALMLDFLWVSGDGLSQLKDLN 193
Query: 205 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 264
KL L L V L +L+ L L++ Q+SD+G F+KI L+ ++L N +
Sbjct: 194 KLEELYLAKTLVDDDGLATLTQFPKLKKTRLSQNQISDEGLAVFAKIPQLEEIDLSENSL 253
Query: 265 -TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 323
+D + HL GL L+ LNL G+ D G+ L GL +L+ L L +T++ ++GL++L +
Sbjct: 254 LSDAGMKHLSGLGKLKKLNLWRVGLTDAGVEPLQGLTSLEWLNLDNTRLTNAGLKYLKDM 313
Query: 324 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 368
LE ++L T +SD L+ L L+SLK L L +T+ G+A L
Sbjct: 314 QKLEFLHLGSTAVSDEGLKHLEPLTSLKELKLTRTAVTEKGVAEL 358
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 98/309 (31%), Positives = 151/309 (48%), Gaps = 19/309 (6%)
Query: 28 FRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLD 87
FR + D L + G+ S L S+ L+ + +TD+ L + + L++LD
Sbjct: 79 FRGTKIDDAALKEIAGL------------SHLRSLLLNETPITDAALESVGKVTTLENLD 126
Query: 88 FNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGG 147
C +++ + +L GLS L +L N+ I M L NL L L+ G
Sbjct: 127 LRNC-SLNNKAISYLTGLSKLKALRLSGNSDIDDDAMADINQLTNLKALMLDFLWVSGDG 185
Query: 148 LVNLKGLMKLESLNIKWCNCITDSD-MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
L LK L KLE L + + D D + L+ LK ++S ++++D G+A + +L
Sbjct: 186 LSQLKDLNKLEELYL--AKTLVDDDGLATLTQFPKLKKTRLSQNQISDEGLAVFAKIPQL 243
Query: 207 TLLNL-EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265
++L E ++ A + LS LG L LNL R L+D G E + SL+ LNL +T
Sbjct: 244 EEIDLSENSLLSDAGMKHLSGLGKLKKLNLWRVGLTDAGVEPLQGLTSLEWLNLDNTRLT 303
Query: 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL-SGLT 324
+ L +LK + LE L+L S + DEGL +L L +LK L+L+ T V G+ L L
Sbjct: 304 NAGLKYLKDMQKLEFLHLGSTAVSDEGLKHLEPLTSLKELKLTRTAVTEKGVAELKKKLP 363
Query: 325 NLESINLSF 333
N E I L +
Sbjct: 364 NTE-IQLKY 371
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 84/164 (51%), Gaps = 1/164 (0%)
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
G + ++ ++ D ++ + + L+ L L ITD L + +T LE+L+L +C
Sbjct: 72 GYVIEVDFRGTKIDDAALKEIAGLSHLRSLLLNETPITDAALESVGKVTTLENLDLRNCS 131
Query: 288 IGDEGLVNLTGLCNLKCLELS-DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG 346
+ ++ + LTGL LK L LS ++ + + ++ LTNL+++ L F +S L +L
Sbjct: 132 LNNKAISYLTGLSKLKALRLSGNSDIDDDAMADINQLTNLKALMLDFLWVSGDGLSQLKD 191
Query: 347 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 390
L+ L+ L L + D GLA LT L L +I+D G A
Sbjct: 192 LNKLEELYLAKTLVDDDGLATLTQFPKLKKTRLSQNQISDEGLA 235
>gi|149175887|ref|ZP_01854505.1| leucine-rich repeat domain protein [Planctomyces maris DSM 8797]
gi|148845334|gb|EDL59679.1| leucine-rich repeat domain protein [Planctomyces maris DSM 8797]
Length = 360
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 82/219 (37%), Positives = 119/219 (54%), Gaps = 1/219 (0%)
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
GLV+LK +L+ L + W ++D + L L+ L L + + V+ SG+A+L+GL L
Sbjct: 128 GLVHLKRFHRLKRLML-WNTSVSDDGLVHLKELSQLNHLDLFYTPVSGSGLAHLQGLTNL 186
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 266
T LNL+G VT A L ++ +L LNLN+ +SD G + L +L L ++T
Sbjct: 187 TWLNLQGTAVTNAGLKQVNCFSALRVLNLNQTSISDAGLVHLRDLPQLIILQLEQTQVTG 246
Query: 267 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 326
L L L L L L+ I D + +L L LEL DTQ+ +GL HLSGL L
Sbjct: 247 TGLSELSSLPKLYCLKLNGSLINDSSMSHLKSFKTLIRLELQDTQISDAGLVHLSGLPLL 306
Query: 327 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 365
+++NLS T ++D L L GL LK++ L Q+T GL
Sbjct: 307 DALNLSGTQVTDAGLVYLQGLPRLKNVYLKNTQVTSEGL 345
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 84/258 (32%), Positives = 129/258 (50%), Gaps = 27/258 (10%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
+ LSG ++++GL+HLK L+ L + +SD GL HL+ LS L
Sbjct: 117 ISLSGKGLSNTGLVHLKRFHRLKRLML-WNTSVSDDGLVHLKELSQLN------------ 163
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
LDL GL +L+GL L LN++ +T++ +K ++ +
Sbjct: 164 -------------HLDLFYTPVSGSGLAHLQGLTNLTWLNLQ-GTAVTNAGLKQVNCFSA 209
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
L+ L ++ + ++D+G+ +L+ L +L +L LE VT L LS+L L+ L LN ++
Sbjct: 210 LRVLNLNQTSISDAGLVHLRDLPQLIILQLEQTQVTGTGLSELSSLPKLYCLKLNGSLIN 269
Query: 242 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN 301
D +L L L +I+D LVHL GL L++LNL + D GLV L GL
Sbjct: 270 DSSMSHLKSFKTLIRLELQDTQISDAGLVHLSGLPLLDALNLSGTQVTDAGLVYLQGLPR 329
Query: 302 LKCLELSDTQVGSSGLRH 319
LK + L +TQV S GL
Sbjct: 330 LKNVYLKNTQVTSEGLEQ 347
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 78/243 (32%), Positives = 124/243 (51%), Gaps = 3/243 (1%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
+K ++ES+++ + DSD+ L+ NL+ + +S ++++G+ +LK +L L
Sbjct: 86 MKSFDEVESISL---DVTQDSDLVWLNDFPNLERISLSGKGLSNTGLVHLKRFHRLKRLM 142
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
L V+ L L L L +L+L +S G + +L LNL +T+ L
Sbjct: 143 LWNTSVSDDGLVHLKELSQLNHLDLFYTPVSGSGLAHLQGLTNLTWLNLQGTAVTNAGLK 202
Query: 271 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 330
+ + L LNL+ I D GLV+L L L L+L TQV +GL LS L L +
Sbjct: 203 QVNCFSALRVLNLNQTSISDAGLVHLRDLPQLIILQLEQTQVTGTGLSELSSLPKLYCLK 262
Query: 331 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 390
L+ + I+D S+ L +L L L QI+D GL L+ L L L+L G ++TD+G
Sbjct: 263 LNGSLINDSSMSHLKSFKTLIRLELQDTQISDAGLVHLSGLPLLDALNLSGTQVTDAGLV 322
Query: 391 YLR 393
YL+
Sbjct: 323 YLQ 325
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/168 (37%), Positives = 89/168 (52%), Gaps = 5/168 (2%)
Query: 232 YLNLNRCQLS-----DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 286
+ NL R LS + G + LK L L ++D+ LVHLK L+ L L+L
Sbjct: 111 FPNLERISLSGKGLSNTGLVHLKRFHRLKRLMLWNTSVSDDGLVHLKELSQLNHLDLFYT 170
Query: 287 GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG 346
+ GL +L GL NL L L T V ++GL+ ++ + L +NL+ T ISD L L
Sbjct: 171 PVSGSGLAHLQGLTNLTWLNLQGTAVTNAGLKQVNCFSALRVLNLNQTSISDAGLVHLRD 230
Query: 347 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRS 394
L L L L+ Q+T TGL+ L+SL L L L G+ I DS ++L+S
Sbjct: 231 LPQLIILQLEQTQVTGTGLSELSSLPKLYCLKLNGSLINDSSMSHLKS 278
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 94/191 (49%), Gaps = 3/191 (1%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
S L +DL + V+ SGL HL+ +NL L+ +++ GL+ + S L L+ +
Sbjct: 160 SQLNHLDLFYTPVSGSGLAHLQGLTNLTWLNLQ-GTAVTNAGLKQVNCFSALRVLNLNQ- 217
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+I+ G+ L L+ L LE+ GL L L KL L + + I DS M L
Sbjct: 218 TSISDAGLVHLRDLPQLIILQLEQTQVTGTGLSELSSLPKLYCLKLN-GSLINDSSMSHL 276
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
L L++ ++++D+G+ +L GL L LNL G VT A L L L L + L
Sbjct: 277 KSFKTLIRLELQDTQISDAGLVHLSGLPLLDALNLSGTQVTDAGLVYLQGLPRLKNVYLK 336
Query: 237 RCQLSDDGCEK 247
Q++ +G E+
Sbjct: 337 NTQVTSEGLEQ 347
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 73/145 (50%), Gaps = 3/145 (2%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
S+L ++L+ + ++D+GL+HL+D L L Q++ GL L L L L
Sbjct: 208 SALRVLNLNQTSISDAGLVHLRDLPQLIILQLE-QTQVTGTGLSELSSLPKLYCLKL-NG 265
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+ I M L++L+L+ GLV+L GL L++LN+ +TD+ + L
Sbjct: 266 SLINDSSMSHLKSFKTLIRLELQDTQISDAGLVHLSGLPLLDALNLS-GTQVTDAGLVYL 324
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLK 201
GL LK++ + ++VT G+ K
Sbjct: 325 QGLPRLKNVYLKNTQVTSEGLEQRK 349
>gi|384245058|gb|EIE18554.1| L domain-like protein [Coccomyxa subellipsoidea C-169]
Length = 731
Score = 121 bits (303), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 116/334 (34%), Positives = 185/334 (55%), Gaps = 13/334 (3%)
Query: 70 TDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAG 129
T + L K S LQ L+ C +I D GL+ L L++LTS++ + ITAQG+ A +G
Sbjct: 312 TGAELREWKGLSLLQELNLKGCYKIEDAGLQGLSLLTSLTSINMQECWQITAQGLAALSG 371
Query: 130 LINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS- 188
L ++ ++L+ C +I L L L +L +LN++ C+ + DS + PLS L +L+SL +S
Sbjct: 372 LSRMMDVNLQGCRKI-SSLEPLASLSRLAALNLRNCDGLGDSSLGPLSRLVSLRSLDLSG 430
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCP--VTAACLDSLSALGSLFYLNLNRC-QLSDDGC 245
C+ +T G+ L L LT L L+ C +A L LS L +L LNL+ C Q G
Sbjct: 431 CTHLTGRGLLPLSSLTGLTALKLQHCAGIRRSADLAPLSLLTALSTLNLSGCSQEEGAGI 490
Query: 246 EKFSKIGSLKVLNL-GFNEIT--DECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCN 301
+ + L+ L+L G+ +T D+ L+ L L + SLNL C + D GL + + +
Sbjct: 491 SSLATLTCLRALSLDGWRHVTFIDDGLMALTSLRGVASLNLQGCTSLTDVGLAAIGHMTS 550
Query: 302 LKCLELSD-TQVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNL-DAR 358
L + L D Q+ G +G+ +L S++L + + +SD +A ++SL++LNL +
Sbjct: 551 LTNVNLQDCRQITGEGFAGWAGMAHLTSLSLQNASMVSDAGCCAIARITSLRTLNLKNCP 610
Query: 359 QITDTGLAALTSLTGLTHLDLFG-ARITDSGAAY 391
+TD LAALT L L HL L G +++D+ A+
Sbjct: 611 ALTDDCLAALTPLERLCHLRLQGNQQLSDAALAH 644
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 124/367 (33%), Positives = 194/367 (52%), Gaps = 17/367 (4%)
Query: 27 AFRDCALQDLCLGQYPGV-NDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQ 84
A+R ALQ L + V ND+ ++ +L SV L+G DVTD GL+HL S L
Sbjct: 90 AYRFPALQQLDMSACRRVSNDELANL--RHLPNLTSVVLAGCEDVTDEGLLHLSHLSRLA 147
Query: 85 SLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAG-LINLVKLDLERCTR 143
SL+ + C +++DGGL L L L SL+ +++ +G+ A A L L L L +R
Sbjct: 148 SLNLSNCCKVTDGGLLALAALRQLGSLNLSGCVSLSERGLAAIAARLRRLHTLKLGGTSR 207
Query: 144 IH----GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIA 198
+ + + GL L L++ + ITD+ + L L+ L++L + +C +V+ G+A
Sbjct: 208 VATISDASVAAIAGLTSLTHLDLSGSHDITDAGLLHLGSLSRLRTLVLWNCMRVSVDGLA 267
Query: 199 YLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKV 256
+ L + L+L GC ++ A S++ L L L+L C+ + ++ + L+
Sbjct: 268 VFRQLPAVADLSLRGCAQLSDALCGSVAHLEQLTRLDLRACERFTGAELREWKGLSLLQE 327
Query: 257 LNL-GFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQVGS 314
LNL G +I D L L LT+L S+N+ C I +GL L+GL + + L + S
Sbjct: 328 LNLKGCYKIEDAGLQGLSLLTSLTSINMQECWQITAQGLAALSGLSRMMDVNLQGCRKIS 387
Query: 315 SGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT 372
S L L+ L+ L ++NL + G+ D SL L+ L SL+SL+L +T GL L+SLT
Sbjct: 388 S-LEPLASLSRLAALNLRNCDGLGDSSLGPLSRLVSLRSLDLSGCTHLTGRGLLPLSSLT 446
Query: 373 GLTHLDL 379
GLT L L
Sbjct: 447 GLTALKL 453
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 100/279 (35%), Positives = 141/279 (50%), Gaps = 24/279 (8%)
Query: 133 LVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CS 190
L +LD+ C R+ + L NL+ L L S+ + C +TD + LS L+ L SL +S C
Sbjct: 96 LQQLDMSACRRVSNDELANLRHLPNLTSVVLAGCEDVTDEGLLHLSHLSRLASLNLSNCC 155
Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCPV-----TAACLDSLSALGSLFYLNLNR-CQLSDDG 244
KVTD G+ L L++L LNL GC AA L L +L +R +SD
Sbjct: 156 KVTDGGLLALAALRQLGSLNLSGCVSLSERGLAAIAARLRRLHTLKLGGTSRVATISDAS 215
Query: 245 CEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLV---NLTGL 299
+ + SL L+L G ++ITD L+HL L+ L +L L +C + +GL L +
Sbjct: 216 VAAIAGLTSLTHLDLSGSHDITDAGLLHLGSLSRLRTLVLWNCMRVSVDGLAVFRQLPAV 275
Query: 300 CNLK---CLELSDTQVGSSGLRHLSGLTNLE-SINLSFTGISDGSLRKLAGLSSLKSLNL 355
+L C +LSD GS + HL LT L+ FTG LR+ GLS L+ LNL
Sbjct: 276 ADLSLRGCAQLSDALCGS--VAHLEQLTRLDLRACERFTG---AELREWKGLSLLQELNL 330
Query: 356 DA-RQITDTGLAALTSLTGLTHLDLFGA-RITDSGAAYL 392
+I D GL L+ LT LT +++ +IT G A L
Sbjct: 331 KGCYKIEDAGLQGLSLLTSLTSINMQECWQITAQGLAAL 369
>gi|297803756|ref|XP_002869762.1| hypothetical protein ARALYDRAFT_492485 [Arabidopsis lyrata subsp.
lyrata]
gi|297315598|gb|EFH46021.1| hypothetical protein ARALYDRAFT_492485 [Arabidopsis lyrata subsp.
lyrata]
Length = 590
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 119/395 (30%), Positives = 172/395 (43%), Gaps = 104/395 (26%)
Query: 98 GLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGG-LVNLKGLMK 156
G +H ++ ++ R ++I A+ M G +NLV L+L C RI+ L + GL
Sbjct: 58 GFKH-----SVENIDLRGESSINAEWMAYIGGFVNLVSLNLSDCQRINSSTLWPITGLTS 112
Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
L L++ C +TD+ +K L + NLK L IS + VT GI+ L LQKL+LL+L G PV
Sbjct: 113 LTELDLSRCFKVTDAGIKHLQSVVNLKKLWISQTGVTKVGISLLASLQKLSLLDLGGLPV 172
Query: 217 TAACLDSLSALGSLFYL-------------------NLNRCQLSDDGCEKFSKIGSLKVL 257
T L +L L L YL NL+ LS + I L+ L
Sbjct: 173 TDHNLIALQELTKLEYLDIWGSNVTNQGAISILQFSNLSFLNLSWTSVTQTPNIPHLECL 232
Query: 258 NLGFNEITDECLVH---------------------------------------------- 271
++ I E H
Sbjct: 233 HMNMCTIVSEPKTHCSLASLKKLVLSGANFSAETEALSFTNKSSITYLDVSKTSLQNFSF 292
Query: 272 LKGLTNLESLNLDSCGIGDE--GLVNLTGLCNLKCLELSDTQVGSSGLRHLSG-LTNLES 328
++ + NLE L+L S GD+ G V G NLK L +SDT++ S+G+ +L+G + LE+
Sbjct: 293 IETMINLEHLDLSSTAFGDDSVGFVACVG-ENLKNLNVSDTKITSAGVGNLAGHVPQLET 351
Query: 329 INLSFTGISD-----------------------------GSLRKLAGLSSLKSLNLDARQ 359
+LS T + D SL L L+SLK+L+L+
Sbjct: 352 FSLSQTFVDDLSILLISTMMPCVKALDLGMTSIREEQAEPSLAALQSLTSLKTLSLEHPY 411
Query: 360 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRS 394
+ DT L+AL+SLTGLTHL L +TDS +L S
Sbjct: 412 LGDTALSALSSLTGLTHLSLRSTSLTDSTLHHLSS 446
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 100/377 (26%), Positives = 175/377 (46%), Gaps = 42/377 (11%)
Query: 11 FNELVYSRC--LTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIAS-QGSSLLSVDLSG 66
EL SRC +T+ ++ + L+ L + Q GV + ++AS Q SLL DL G
Sbjct: 113 LTELDLSRCFKVTDAGIKHLQSVVNLKKLWISQT-GVTKVGISLLASLQKLSLL--DLGG 169
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
VTD LI L++ + L+ LD + +++ G + SNL+ L+ ++ +
Sbjct: 170 LPVTDHNLIALQELTKLEYLDI-WGSNVTNQGAISILQFSNLSFLN------LSWTSVTQ 222
Query: 127 FAGLINLVKLDLERCT-----RIHGGLVNLKGLM--------KLESLNIKWCNCITDSDM 173
+ +L L + CT + H L +LK L+ + E+L+ + IT D+
Sbjct: 223 TPNIPHLECLHMNMCTIVSEPKTHCSLASLKKLVLSGANFSAETEALSFTNKSSITYLDV 282
Query: 174 KPLS--------GLTNLKSLQISCSKVTDSGIAYLKGL-QKLTLLNLEGCPVTAACLDSL 224
S + NL+ L +S + D + ++ + + L LN+ +T+A + +L
Sbjct: 283 SKTSLQNFSFIETMINLEHLDLSSTAFGDDSVGFVACVGENLKNLNVSDTKITSAGVGNL 342
Query: 225 SA-LGSLFYLNLNRCQLSDDGCEKFSKIGS-LKVLNLGFNEITDE----CLVHLKGLTNL 278
+ + L +L++ + D S + +K L+LG I +E L L+ LT+L
Sbjct: 343 AGHVPQLETFSLSQTFVDDLSILLISTMMPCVKALDLGMTSIREEQAEPSLAALQSLTSL 402
Query: 279 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
++L+L+ +GD L L+ L L L L T + S L HLS L NL S+ + ++
Sbjct: 403 KTLSLEHPYLGDTALSALSSLTGLTHLSLRSTSLTDSTLHHLSSLPNLVSLGVRDAVLTS 462
Query: 339 GSLRKLAGLSSLKSLNL 355
L K L++L+L
Sbjct: 463 NGLEKFRPPKRLRTLDL 479
>gi|46447569|ref|YP_008934.1| hypothetical protein pc1935 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46401210|emb|CAF24659.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 504
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 108/319 (33%), Positives = 160/319 (50%), Gaps = 49/319 (15%)
Query: 83 LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT 142
+++L+F+ ++D L L+ NL +L FR+ +TA G+ L+ L LDL C
Sbjct: 227 IEALNFSNQAYLTDVHLLALKDCKNLKALYFRKCPNLTAAGLAYLRPLVALQHLDLNYCY 286
Query: 143 RI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS--CS-KVTDSGIA 198
+ GL +L L+ L+ LN+ +TD+ + LS LT L+ L +S C+ K+TD+G+A
Sbjct: 287 NLTDAGLAHLAPLVALKHLNLSGHGYLTDAGLAHLSPLTALQHLNLSECCNYKLTDAGLA 346
Query: 199 YLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 257
+L+ L L LNL C T A L L L +L +LNL+ C IG+
Sbjct: 347 HLRPLVALKYLNLSRCSKFTGAGLAHLRPLTALQHLNLSGC----------GGIGA---- 392
Query: 258 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD-TQVGSSG 316
+ L HL+ LT L+ LNL CG+ D+ L +LT L L+ L+LS+ + +G
Sbjct: 393 -----GLASAGLAHLRPLTALQHLNLSWCGVTDDELAHLTPLEALQYLDLSNCWHLTDAG 447
Query: 317 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 376
L HL+ L L+ +NLS Q+T+ GLA L LT L H
Sbjct: 448 LAHLNPLIALQHLNLS-----------------------KCDQLTNAGLAHLIPLTALQH 484
Query: 377 LDLFG-ARITDSGAAYLRS 394
L+L G + +TD G A LR
Sbjct: 485 LNLSGCSNLTDDGLARLRP 503
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 97/276 (35%), Positives = 142/276 (51%), Gaps = 37/276 (13%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TD L+ LKDC NL++L F C ++ GL +LR
Sbjct: 238 LTDVHLLALKDCKNLKALYFRKCPNLTAAGLAYLR------------------------- 272
Query: 129 GLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
L+ L LDL C + GL +L L+ L+ LN+ +TD+ + LS LT L+ L +
Sbjct: 273 PLVALQHLDLNYCYNLTDAGLAHLAPLVALKHLNLSGHGYLTDAGLAHLSPLTALQHLNL 332
Query: 188 S--CS-KVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC----- 238
S C+ K+TD+G+A+L+ L L LNL C T A L L L +L +LNL+ C
Sbjct: 333 SECCNYKLTDAGLAHLRPLVALKYLNLSRCSKFTGAGLAHLRPLTALQHLNLSGCGGIGA 392
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT 297
L+ G + +L+ LNL + +TD+ L HL L L+ L+L +C + D GL +L
Sbjct: 393 GLASAGLAHLRPLTALQHLNLSWCGVTDDELAHLTPLEALQYLDLSNCWHLTDAGLAHLN 452
Query: 298 GLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLS 332
L L+ L LS Q+ ++GL HL LT L+ +NLS
Sbjct: 453 PLIALQHLNLSKCDQLTNAGLAHLIPLTALQHLNLS 488
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 82/241 (34%), Positives = 127/241 (52%), Gaps = 11/241 (4%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
++T +GL +L+ LQ LD N+C ++D GL HL L L L+ + +T G+
Sbjct: 261 PNLTAAGLAYLRPLVALQHLDLNYCYNLTDAGLAHLAPLVALKHLNLSGHGYLTDAGLAH 320
Query: 127 FAGLINLVKLDLERCTRIH---GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
+ L L L+L C GL +L+ L+ L+ LN+ C+ T + + L LT L+
Sbjct: 321 LSPLTALQHLNLSECCNYKLTDAGLAHLRPLVALKYLNLSRCSKFTGAGLAHLRPLTALQ 380
Query: 184 SLQIS-CSKV----TDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
L +S C + +G+A+L+ L L LNL C VT L L+ L +L YL+L+ C
Sbjct: 381 HLNLSGCGGIGAGLASAGLAHLRPLTALQHLNLSWCGVTDDELAHLTPLEALQYLDLSNC 440
Query: 239 -QLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVN 295
L+D G + + +L+ LNL +++T+ L HL LT L+ LNL C + D+GL
Sbjct: 441 WHLTDAGLAHLNPLIALQHLNLSKCDQLTNAGLAHLIPLTALQHLNLSGCSNLTDDGLAR 500
Query: 296 L 296
L
Sbjct: 501 L 501
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 92/251 (36%), Positives = 135/251 (53%), Gaps = 14/251 (5%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGC 214
K+E+LN +TD + L NLK+L C +T +G+AYL+ L L L+L C
Sbjct: 226 KIEALNFSNQAYLTDVHLLALKDCKNLKALYFRKCPNLTAAGLAYLRPLVALQHLDLNYC 285
Query: 215 P-VTAACLDSLSALGSLFYLNLN-RCQLSDDGCEKFSKIGSLKVLNLGF---NEITDECL 269
+T A L L+ L +L +LNL+ L+D G S + +L+ LNL ++TD L
Sbjct: 286 YNLTDAGLAHLAPLVALKHLNLSGHGYLTDAGLAHLSPLTALQHLNLSECCNYKLTDAGL 345
Query: 270 VHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELS-----DTQVGSSGLRHLSGL 323
HL+ L L+ LNL C GL +L L L+ L LS + S+GL HL L
Sbjct: 346 AHLRPLVALKYLNLSRCSKFTGAGLAHLRPLTALQHLNLSGCGGIGAGLASAGLAHLRPL 405
Query: 324 TNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGA 382
T L+ +NLS+ G++D L L L +L+ L+L + +TD GLA L L L HL+L
Sbjct: 406 TALQHLNLSWCGVTDDELAHLTPLEALQYLDLSNCWHLTDAGLAHLNPLIALQHLNLSKC 465
Query: 383 -RITDSGAAYL 392
++T++G A+L
Sbjct: 466 DQLTNAGLAHL 476
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 73/143 (51%), Gaps = 7/143 (4%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDG----GLEHLRGLSNLTSLSFRRNNAITAQ 122
S T +GL HL+ + LQ L+ + C I G GL HLR L+ L L+ +T
Sbjct: 363 SKFTGAGLAHLRPLTALQHLNLSGCGGIGAGLASAGLAHLRPLTALQHLNLSW-CGVTDD 421
Query: 123 GMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
+ L L LDL C + GL +L L+ L+ LN+ C+ +T++ + L LT
Sbjct: 422 ELAHLTPLEALQYLDLSNCWHLTDAGLAHLNPLIALQHLNLSKCDQLTNAGLAHLIPLTA 481
Query: 182 LKSLQIS-CSKVTDSGIAYLKGL 203
L+ L +S CS +TD G+A L+
Sbjct: 482 LQHLNLSGCSNLTDDGLARLRPF 504
Score = 46.6 bits (109), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++LS VTD L HL LQ LD + C ++D GL HL L L L+ +
Sbjct: 406 TALQHLNLSWCGVTDDELAHLTPLEALQYLDLSNCWHLTDAGLAHLNPLIALQHLNLSKC 465
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRI 144
+ +T G+ L L L+L C+ +
Sbjct: 466 DQLTNAGLAHLIPLTALQHLNLSGCSNL 493
>gi|449132603|ref|ZP_21768618.1| leucine-rich repeat domain protein [Rhodopirellula europaea 6C]
gi|448888282|gb|EMB18604.1| leucine-rich repeat domain protein [Rhodopirellula europaea 6C]
Length = 455
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 99/322 (30%), Positives = 153/322 (47%), Gaps = 33/322 (10%)
Query: 42 PGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQ--ISDGGL 99
PG++D M+ + S + L + LS + +TD ++ + +L+ F + ++D GL
Sbjct: 118 PGIDDAGMENLTSL-TKLERLILSDTAITDR---TIETAGKMNTLEVLFLRRTGVTDEGL 173
Query: 100 EHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 159
E L GLS L ++ R N I GM A + L + LE+ GLV L L L+
Sbjct: 174 ELLTGLSKLRAIDLRNTN-IGDAGMDPLAKIKTLADVQLEKSKVTDEGLVKLAPL-PLKY 231
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
+N +C I MK L L+ LQ SK+ D+ +A LKGL KLT L + GC VT
Sbjct: 232 INFNYCTTINGPTMKMLGQTPTLERLQGDYSKINDASMAELKGLSKLTHLRIRGCDVTGE 291
Query: 220 ------------------------CLDSLSALGSLFYLNLNRCQL-SDDGCEKFSKIGSL 254
L+ +S L ++ +++++ C+L S +G + K+ L
Sbjct: 292 GIKHIANNKALAKFELRDSSVDDKGLEVISQLPAVTHVDISECRLASPEGIAQLGKLTGL 351
Query: 255 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 314
L L + D L L NLE LNL S + D+ L L + LK L ++ TQ+G
Sbjct: 352 TYLGLWETKTNDATLEAFGELVNLEELNLKSTSVTDQSLPVLMKMTKLKTLNVAGTQLGD 411
Query: 315 SGLRHLSGLTNLESINLSFTGI 336
L+ L NL+S+N++ T I
Sbjct: 412 DSFLELAKLPNLKSMNVANTSI 433
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 90/342 (26%), Positives = 144/342 (42%), Gaps = 54/342 (15%)
Query: 71 DSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL 130
+ + HL N FN I D G+E+L L+ L L + AIT + ++ +
Sbjct: 98 EESMQHLSGIPNTLIATFN-GPGIDDAGMENLTSLTKLERLILS-DTAITDRTIETAGKM 155
Query: 131 INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS 190
L L L R GL L GL KL +++++ N I D+ M PL+ + L +Q+ S
Sbjct: 156 NTLEVLFLRRTGVTDEGLELLTGLSKLRAIDLRNTN-IGDAGMDPLAKIKTLADVQLEKS 214
Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF-S 249
KVTD G+ L L L Y+N N C + K
Sbjct: 215 KVTDEGLVKLAPL-------------------------PLKYINFNYCTTINGPTMKMLG 249
Query: 250 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 309
+ +L+ L +++I D + LKGL+ L L + C + EG+ ++ L EL D
Sbjct: 250 QTPTLERLQGDYSKINDASMAELKGLSKLTHLRIRGCDVTGEGIKHIANNKALAKFELRD 309
Query: 310 TQVGSSGLRHLSGLTNLESINLS---------------FTGIS----------DGSLRKL 344
+ V GL +S L + +++S TG++ D +L
Sbjct: 310 SSVDDKGLEVISQLPAVTHVDISECRLASPEGIAQLGKLTGLTYLGLWETKTNDATLEAF 369
Query: 345 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
L +L+ LNL + +TD L L +T L L++ G ++ D
Sbjct: 370 GELVNLEELNLKSTSVTDQSLPVLMKMTKLKTLNVAGTQLGD 411
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 73/283 (25%), Positives = 127/283 (44%), Gaps = 4/283 (1%)
Query: 107 NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCN 166
N+ S + M+ +G+ N + G+ NL L KLE L I
Sbjct: 84 NVVEFSIANQKGGIEESMQHLSGIPNTLIATFNGPGIDDAGMENLTSLTKLERL-ILSDT 142
Query: 167 CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 226
ITD ++ + L+ L + + VTD G+ L GL KL ++L + A +D L+
Sbjct: 143 AITDRTIETAGKMNTLEVLFLRRTGVTDEGLELLTGLSKLRAIDLRNTNIGDAGMDPLAK 202
Query: 227 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDS 285
+ +L + L + +++D+G K + + LK +N + I + L LE L D
Sbjct: 203 IKTLADVQLEKSKVTDEGLVKLAPL-PLKYINFNYCTTINGPTMKMLGQTPTLERLQGDY 261
Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 345
I D + L GL L L + V G++H++ L L + + D L ++
Sbjct: 262 SKINDASMAELKGLSKLTHLRIRGCDVTGEGIKHIANNKALAKFELRDSSVDDKGLEVIS 321
Query: 346 GLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARITDS 387
L ++ +++ + R + G+A L LTGLT+L L+ + D+
Sbjct: 322 QLPAVTHVDISECRLASPEGIAQLGKLTGLTYLGLWETKTNDA 364
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 104/200 (52%), Gaps = 2/200 (1%)
Query: 194 DSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS 253
+ + +L G+ + G + A +++L++L L L L+ ++D E K+ +
Sbjct: 98 EESMQHLSGIPNTLIATFNGPGIDDAGMENLTSLTKLERLILSDTAITDRTIETAGKMNT 157
Query: 254 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 313
L+VL L +TDE L L GL+ L +++L + IGD G+ L + L ++L ++V
Sbjct: 158 LEVLFLRRTGVTDEGLELLTGLSKLRAIDLRNTNIGDAGMDPLAKIKTLADVQLEKSKVT 217
Query: 314 SSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 372
GL L+ L L+ IN ++ T I+ +++ L +L+ L D +I D +A L L+
Sbjct: 218 DEGLVKLAPLP-LKYINFNYCTTINGPTMKMLGQTPTLERLQGDYSKINDASMAELKGLS 276
Query: 373 GLTHLDLFGARITDSGAAYL 392
LTHL + G +T G ++
Sbjct: 277 KLTHLRIRGCDVTGEGIKHI 296
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 101/220 (45%), Gaps = 2/220 (0%)
Query: 170 DSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 229
+ M+ LSG+ N + + D+G+ L L KL L L +T +++ + +
Sbjct: 98 EESMQHLSGIPNTLIATFNGPGIDDAGMENLTSLTKLERLILSDTAITDRTIETAGKMNT 157
Query: 230 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 289
L L L R ++D+G E + + L+ ++L I D + L + L + L+ +
Sbjct: 158 LEVLFLRRTGVTDEGLELLTGLSKLRAIDLRNTNIGDAGMDPLAKIKTLADVQLEKSKVT 217
Query: 290 DEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 348
DEGLV L L LK + + T + ++ L LE + ++ I+D S+ +L GLS
Sbjct: 218 DEGLVKLAPLP-LKYINFNYCTTINGPTMKMLGQTPTLERLQGDYSKINDASMAELKGLS 276
Query: 349 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 388
L L + +T G+ + + L +L + + D G
Sbjct: 277 KLTHLRIRGCDVTGEGIKHIANNKALAKFELRDSSVDDKG 316
>gi|168705463|ref|ZP_02737740.1| leucine-rich repeat domain protein [Gemmata obscuriglobus UQM 2246]
Length = 362
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 104/352 (29%), Positives = 173/352 (49%), Gaps = 6/352 (1%)
Query: 18 RCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS-VDLSGSDVTDSGLIH 76
R + V L A D G +KW + +++ V L G VTD+ L
Sbjct: 3 RTVATVLLVLLAPVARADDGEGAAVKAIEKWGGKVKRDPKGVVTHVMLRGKTVTDADLKA 62
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
L + L LD + ++D GL+HL L+ LT+L+ IT G A L L L
Sbjct: 63 LAPLTGLTDLDLS-STPVTDAGLKHLAPLTKLTALNLG-GTKITDAGPTELAPLAVLTDL 120
Query: 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG 196
+L GL + L L +L++ +T++ + L+ LT ++SL + +K+TD G
Sbjct: 121 NLSSTQVTDAGLKEVARLRTLVALDLSHTG-VTNAGLGHLT-LTKMRSLSLRGTKITDGG 178
Query: 197 IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 256
+ ++ + ++ L+L G +T L L + L+L+ +++ +G ++ + +LK
Sbjct: 179 LREIR-IMSVSGLDLSGTALTDEGLKDLGLFEEITGLDLSDTKVTSNGLKELASQPTLKF 237
Query: 257 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 316
L+L ++ D L HL L LESL L+ G+ G+ L L L+ LEL+ T V G
Sbjct: 238 LSLSRTKVGDAGLKHLAPLKRLESLYLNGTGVTGTGVKELAPLERLRILELTGTMVTGGG 297
Query: 317 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 368
L+HLS L L + LS ++D L+ +A L +L +L+L ++T G+A L
Sbjct: 298 LKHLSTLPRLAILRLSDAAVTDEGLKDIAHLKTLLALDLYRTKVTGAGVAEL 349
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 95/274 (34%), Positives = 140/274 (51%), Gaps = 3/274 (1%)
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
R +T +KA A L L LDL GL +L L KL +LN+ ITD+
Sbjct: 51 RGKTVTDADLKALAPLTGLTDLDLSSTPVTDAGLKHLAPLTKLTALNLGGTK-ITDAGPT 109
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
L+ L L L +S ++VTD+G+ + L+ L L+L VT A L L+ L + L+
Sbjct: 110 ELAPLAVLTDLNLSSTQVTDAGLKEVARLRTLVALDLSHTGVTNAGLGHLT-LTKMRSLS 168
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
L +++D G + +I S+ L+L +TDE L L + L+L + GL
Sbjct: 169 LRGTKITDGGLREI-RIMSVSGLDLSGTALTDEGLKDLGLFEEITGLDLSDTKVTSNGLK 227
Query: 295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 354
L LK L LS T+VG +GL+HL+ L LES+ L+ TG++ +++LA L L+ L
Sbjct: 228 ELASQPTLKFLSLSRTKVGDAGLKHLAPLKRLESLYLNGTGVTGTGVKELAPLERLRILE 287
Query: 355 LDARQITDTGLAALTSLTGLTHLDLFGARITDSG 388
L +T GL L++L L L L A +TD G
Sbjct: 288 LTGTMVTGGGLKHLSTLPRLAILRLSDAAVTDEG 321
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 89/290 (30%), Positives = 147/290 (50%), Gaps = 8/290 (2%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+ L +DLS + VTD+GL HL + L +L+ +I+D G L L+ LT L+ +
Sbjct: 67 TGLTDLDLSSTPVTDAGLKHLAPLTKLTALNLGGT-KITDAGPTELAPLAVLTDLNLS-S 124
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+T G+K A L LV LDL + GL +L L K+ SL+++ ITD ++ +
Sbjct: 125 TQVTDAGLKEVARLRTLVALDLSHTGVTNAGLGHLT-LTKMRSLSLRGTK-ITDGGLREI 182
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ ++ L +S + +TD G+ L +++T L+L VT+ L L++ +L +L+L+
Sbjct: 183 R-IMSVSGLDLSGTALTDEGLKDLGLFEEITGLDLSDTKVTSNGLKELASQPTLKFLSLS 241
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
R ++ D G + + + L+ L L +T + L L L L L + GL +L
Sbjct: 242 RTKVGDAGLKHLAPLKRLESLYLNGTGVTGTGVKELAPLERLRILELTGTMVTGGGLKHL 301
Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL---SFTGISDGSLRK 343
+ L L L LSD V GL+ ++ L L +++L TG LRK
Sbjct: 302 STLPRLAILRLSDAAVTDEGLKDIAHLKTLLALDLYRTKVTGAGVAELRK 351
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 69/190 (36%), Positives = 102/190 (53%), Gaps = 2/190 (1%)
Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265
+T + L G VT A L +L+ L L L+L+ ++D G + + + L LNLG +IT
Sbjct: 45 VTHVMLRGKTVTDADLKALAPLTGLTDLDLSSTPVTDAGLKHLAPLTKLTALNLGGTKIT 104
Query: 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 325
D L L L LNL S + D GL + L L L+LS T V ++GL HL+ LT
Sbjct: 105 DAGPTELAPLAVLTDLNLSSTQVTDAGLKEVARLRTLVALDLSHTGVTNAGLGHLT-LTK 163
Query: 326 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
+ S++L T I+DG LR++ + S+ L+L +TD GL L +T LDL ++T
Sbjct: 164 MRSLSLRGTKITDGGLREIR-IMSVSGLDLSGTALTDEGLKDLGLFEEITGLDLSDTKVT 222
Query: 386 DSGAAYLRSK 395
+G L S+
Sbjct: 223 SNGLKELASQ 232
>gi|406830023|ref|ZP_11089617.1| hypothetical protein SpalD1_00247 [Schlesneria paludicola DSM
18645]
Length = 374
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 110/343 (32%), Positives = 177/343 (51%), Gaps = 28/343 (8%)
Query: 56 GSSLLSVDLSGSDVTDSGLIH-LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
G ++ V+L S+ G +H LK + + SL+ N +I+D GL+ +R ++LT L+
Sbjct: 49 GRPVIYVNLQQSERFGDGYVHALKPFTKMTSLNLN-STKITDSGLKGIRNFTSLTMLTL- 106
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
AF + ++ GLV LK L L L++ C ITD +
Sbjct: 107 -----------AFTKITDV-------------GLVELKDLKNLTRLDLGGCTAITDVGLN 142
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
+ LT+L SL +S ++ TD G+ L L+ L+ L L G +T L L L SL L
Sbjct: 143 EIKELTSLASLHLSYTQFTDVGLKELADLKCLSNLELRGTQITDDGLKELGTLTSLTRLT 202
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
L + ++SD G + + +L++L+LG EITDE L + L + SL L I DEG+
Sbjct: 203 LMQTKISDLGLRELKGLRNLQILDLGLTEITDEGLKEIIDLKQIHSLYLFGDEITDEGMQ 262
Query: 295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG-ISDGSLRKLAGLSSLKSL 353
++ L NL L+L T++ + GL+ +SGL NL+ ++L G I+D L+++ ++ L ++
Sbjct: 263 SIGELNNLTELDLIQTEITNEGLKEISGLKNLKKLHLLNDGKITDVGLKEIGTMTQLTNI 322
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRSKF 396
NL IT+ GL L +L L LD+ +T G L+ +
Sbjct: 323 NLGRTGITNAGLKELRNLKNLQSLDVSETEVTSEGVVALQKEL 365
>gi|290982526|ref|XP_002673981.1| predicted protein [Naegleria gruberi]
gi|284087568|gb|EFC41237.1| predicted protein [Naegleria gruberi]
Length = 363
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 89/339 (26%), Positives = 173/339 (51%), Gaps = 9/339 (2%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L S+++S + + G ++ + L SL+ F +ISD G +++ + L SL
Sbjct: 23 SEMKQLTSLNISNNRIGGKGAKYISEMKQLTSLNI-FNNRISDEGAKYISEMKQLISLDI 81
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
N I A+G K + + L L++ G + + +L SLNI + N I++
Sbjct: 82 SYN-QIGAEGAKFISEMKQLTSLNISYNEISDEGAKYISEMKQLTSLNISY-NDISEG-A 138
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
KP+S + L SL +S ++++ G Y+ +++LT LN+ ++ + + L L
Sbjct: 139 KPISEMKQLTSLNVSNNQISGKGAKYISEMKQLTSLNISDNQISGKGAKYIGEMKQLTSL 198
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+++ Q+SD+G + S++ L LN+ N+I+ + + + L SLN+ + I DE
Sbjct: 199 DISNNQISDEGAKFLSEMKQLISLNVSNNQISGKEAKFMSEMKQLTSLNISNNQISDERA 258
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
++ + L L++ + + G +++S + +L S+++S+ IS ++ + L SL
Sbjct: 259 KYISEMKQLTSLDIFNNLISDEGAKYISEMKHLTSLDISYNEISH-----ISEMKQLTSL 313
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
N+ QI D G +++ + LT LD+ RI GA Y+
Sbjct: 314 NISFNQINDEGAKSISEMKQLTSLDMSYNRIGGEGAKYI 352
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 83/289 (28%), Positives = 149/289 (51%), Gaps = 5/289 (1%)
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIK 163
+ LTSL+ NN I+ +G K + + L L++ RI G G + + +L SLNI
Sbjct: 1 MKQLTSLNVS-NNQISGKGAKYISEMKQLTSLNISN-NRIGGKGAKYISEMKQLTSLNI- 57
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
+ N I+D K +S + L SL IS +++ G ++ +++LT LN+ ++
Sbjct: 58 FNNRISDEGAKYISEMKQLISLDISYNQIGAEGAKFISEMKQLTSLNISYNEISDEGAKY 117
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
+S + L LN++ +S+ G + S++ L LN+ N+I+ + ++ + L SLN+
Sbjct: 118 ISEMKQLTSLNISYNDISE-GAKPISEMKQLTSLNVSNNQISGKGAKYISEMKQLTSLNI 176
Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
I +G + + L L++S+ Q+ G + LS + L S+N+S IS +
Sbjct: 177 SDNQISGKGAKYIGEMKQLTSLDISNNQISDEGAKFLSEMKQLISLNVSNNQISGKEAKF 236
Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
++ + L SLN+ QI+D ++ + LT LD+F I+D GA Y+
Sbjct: 237 MSEMKQLTSLNISNNQISDERAKYISEMKQLTSLDIFNNLISDEGAKYI 285
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 84/324 (25%), Positives = 164/324 (50%), Gaps = 9/324 (2%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L S+++ + ++D G ++ + L SLD ++ QI G + + + LTSL+
Sbjct: 47 SEMKQLTSLNIFNNRISDEGAKYISEMKQLISLDISYN-QIGAEGAKFISEMKQLTSLNI 105
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
N I+ +G K + + L L++ I G + + +L SLN+ N I+
Sbjct: 106 SYN-EISDEGAKYISEMKQLTSLNI-SYNDISEGAKPISEMKQLTSLNVS-NNQISGKGA 162
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
K +S + L SL IS ++++ G Y+ +++LT L++ ++ LS + L L
Sbjct: 163 KYISEMKQLTSLNISDNQISGKGAKYIGEMKQLTSLDISNNQISDEGAKFLSEMKQLISL 222
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
N++ Q+S + S++ L LN+ N+I+DE ++ + L SL++ + I DEG
Sbjct: 223 NVSNNQISGKEAKFMSEMKQLTSLNISNNQISDERAKYISEMKQLTSLDIFNNLISDEGA 282
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
++ + +L L++S ++ H+S + L S+N+SF I+D + ++ + L SL
Sbjct: 283 KYISEMKHLTSLDISYNEIS-----HISEMKQLTSLNISFNQINDEGAKSISEMKQLTSL 337
Query: 354 NLDARQITDTGLAALTSLTGLTHL 377
++ +I G ++ + LT L
Sbjct: 338 DMSYNRIGGEGAKYISEMKHLTSL 361
>gi|329906145|ref|ZP_08274368.1| hypothetical protein IMCC9480_2835 [Oxalobacteraceae bacterium
IMCC9480]
gi|327547327|gb|EGF32161.1| hypothetical protein IMCC9480_2835 [Oxalobacteraceae bacterium
IMCC9480]
Length = 518
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 92/310 (29%), Positives = 164/310 (52%), Gaps = 10/310 (3%)
Query: 54 SQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS 112
Q +L +DL+ + + ++ L+HL +LQ L+ + C Q++D G+ HL S L L
Sbjct: 186 PQMPALQVLDLTACTTIAEANLVHLAKLPDLQQLNLSSCQQLTDAGVAHLPLASTLQHLD 245
Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 172
+T G++ + L +L LD+ C + G + +MK SLN +C +D+
Sbjct: 246 LSGCQQVTDAGLRGLSALRSLQHLDVHSCRLVTGATLGDFAVMK--SLNAGFCRRFSDAG 303
Query: 173 MKPLSGLTNLKSLQIS-CSKVTDSGIAY-LKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
+ ++G+ +L+ L+I+ C +T +A L L +L LN G P++ A L +L A GSL
Sbjct: 304 LAAVAGMHDLQQLEITHCVALTRDALATCLPQLTQLQTLNASGTPLSDAPLQALFAQGSL 363
Query: 231 FYLNLNRCQ-LSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSC-G 287
L L C+ L++ G + + +L L+L + + L L T LE+L+L C G
Sbjct: 364 QQLVLQHCRALTEPGLAQLATSPALVSLDLRSCRGVVGDALPALGRQTALETLDLSRCSG 423
Query: 288 IGDEGLVNLTGLCNLKCLELSDT-QVGSSGLRHLSGLTNLESINLSFTG-ISDGSLRKLA 345
+ + L + L L+ L L ++ +GL HL L L++++L+ G ++DG+LR++A
Sbjct: 424 VTGDDLRHFQSLSKLQTLRLVGCGRINDAGLAHLQALPALKTLDLTDCGYLTDGALRRIA 483
Query: 346 GLSSLKSLNL 355
+L+ L++
Sbjct: 484 HFPALEKLHI 493
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 108/379 (28%), Positives = 167/379 (44%), Gaps = 77/379 (20%)
Query: 58 SLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISD------------GGLE---- 100
S+ ++LSG + +TD+GL HL +L+ +D CIQ++D LE
Sbjct: 43 SVRRLELSGNTRLTDAGLAHLAGLLSLEHVDLRSCIQVTDAGLATLAALPALHTLELAEQ 102
Query: 101 ------HLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE-RCTRIHGGLVNLKG 153
L + L L+ +R IT ++A A NL L++ R L +L+
Sbjct: 103 RDASGAALAQMPQLRHLTLQRCQGITPAALEAVANQANLQHLEISLRRNMTDDELASLRP 162
Query: 154 LMKLESLNIK------------W-------------CNCITDSDMKPLSGLTNLKSLQI- 187
L++L L++ W C I ++++ L+ L +L+ L +
Sbjct: 163 LLQLRHLSLNGSSGFSGSGLEDWPQMPALQVLDLTACTTIAEANLVHLAKLPDLQQLNLS 222
Query: 188 SCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQLSDDGCE 246
SC ++TD+G+A+L L L+L GC VT A L LSAL SL +L+++ C+L
Sbjct: 223 SCQQLTDAGVAHLPLASTLQHLDLSGCQQVTDAGLRGLSALRSLQHLDVHSCRLVTGA-- 280
Query: 247 KFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 305
+K LN GF +D L + G+ +L+ L + C V LT C
Sbjct: 281 TLGDFAVMKSLNAGFCRRFSDAGLAAVAGMHDLQQLEITHC-------VALTRDALATC- 332
Query: 306 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTG 364
L LT L+++N S T +SD L+ L SL+ L L R +T+ G
Sbjct: 333 --------------LPQLTQLQTLNASGTPLSDAPLQALFAQGSLQQLVLQHCRALTEPG 378
Query: 365 LAALTSLTGLTHLDLFGAR 383
LA L + L LDL R
Sbjct: 379 LAQLATSPALVSLDLRSCR 397
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 67/257 (26%), Positives = 128/257 (49%), Gaps = 31/257 (12%)
Query: 135 KLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK-V 192
+L+L TR+ GL +L GL+ LE ++++ C +TD+ + L+ L L +L+++ +
Sbjct: 46 RLELSGNTRLTDAGLAHLAGLLSLEHVDLRSCIQVTDAGLATLAALPALHTLELAEQRDA 105
Query: 193 TDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN-RCQLSDDGCEKFSKI 251
+ + +A + L+ LTL +G +T A L++++ +L +L ++ R ++DD +
Sbjct: 106 SGAALAQMPQLRHLTLQRCQG--ITPAALEAVANQANLQHLEISLRRNMTDDELASLRPL 163
Query: 252 GSLKVLNLGFNEITDEC-LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 310
L+ L+L + L + L+ L+L +C T
Sbjct: 164 LQLRHLSLNGSSGFSGSGLEDWPQMPALQVLDLTAC-----------------------T 200
Query: 311 QVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAAL 368
+ + L HL+ L +L+ +NLS ++D + L S+L+ L+L +Q+TD GL L
Sbjct: 201 TIAEANLVHLAKLPDLQQLNLSSCQQLTDAGVAHLPLASTLQHLDLSGCQQVTDAGLRGL 260
Query: 369 TSLTGLTHLDLFGARIT 385
++L L HLD+ R+
Sbjct: 261 SALRSLQHLDVHSCRLV 277
Score = 43.1 bits (100), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 60/133 (45%), Gaps = 3/133 (2%)
Query: 14 LVYSRCLTEVSLEAFR-DCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTD 71
L + R LTE L AL L L GV + + Q ++L ++DLS S VT
Sbjct: 368 LQHCRALTEPGLAQLATSPALVSLDLRSCRGVVGDALPALGRQ-TALETLDLSRCSGVTG 426
Query: 72 SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLI 131
L H + S LQ+L C +I+D GL HL+ L L +L +T ++ A
Sbjct: 427 DDLRHFQSLSKLQTLRLVGCGRINDAGLAHLQALPALKTLDLTDCGYLTDGALRRIAHFP 486
Query: 132 NLVKLDLERCTRI 144
L KL + C I
Sbjct: 487 ALEKLHIRNCHLI 499
>gi|46445969|ref|YP_007334.1| hypothetical protein pc0335 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46399610|emb|CAF23059.1| hypothetical protein pc0335 [Candidatus Protochlamydia amoebophila
UWE25]
Length = 642
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 114/324 (35%), Positives = 168/324 (51%), Gaps = 11/324 (3%)
Query: 66 GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMK 125
+ +TD+ L+ LK+C NL+ L C +D GL HL L L L+ +T G+
Sbjct: 314 NAHLTDAQLLTLKNCKNLKVLQLQACHNFTDAGLAHLTPLMALQHLNLSYCKNLTDAGLA 373
Query: 126 AFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A L+ L L+L C + GL +L L+ L LN+ WCN +TD+ + L+ L L
Sbjct: 374 HLAPLVVLQHLNLSSCHNLTDAGLAHLTPLVALTHLNLSWCNKLTDAGLAHLTPLVALTH 433
Query: 185 LQI-SCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLS 241
L + C K+T+ G+A+L L L L+L C +T A L LS+L +L +L L C L+
Sbjct: 434 LDLRECDKLTNRGLAHLALLLTLQYLDLNYCRNLTDAGLAHLSSLVALQHLKLCCCVSLT 493
Query: 242 DDGCEKFSKIGSLKVLNLG--FNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTG 298
D G + + +L L+L FN ITD L HL L L+ L L C + D GL +LT
Sbjct: 494 DAGLAHLAPLVALTHLDLSWCFN-ITDAGLAHLTPLVTLQHLGLSGCRRLTDVGLAHLTR 552
Query: 299 LCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLD 356
L L+ L L+ + +GL HL+ L NL+ ++LS +++ L L L +L+ L+L
Sbjct: 553 LVALQHLGLNRCDNLTDAGLAHLTPLINLQHLDLSECRKLTNAGLAHLTPLVALQRLDLR 612
Query: 357 -ARQITDTGLAALTSLTGLTHLDL 379
++T LA L HLDL
Sbjct: 613 CCNKLTGARLAHFKFLVAKPHLDL 636
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 107/302 (35%), Positives = 162/302 (53%), Gaps = 11/302 (3%)
Query: 102 LRGLSN-LTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLES 159
L SN + +L+F +N +T + NL L L+ C GL +L LM L+
Sbjct: 299 LNHFSNEIEALNFSKNAHLTDAQLLTLKNCKNLKVLQLQACHNFTDAGLAHLTPLMALQH 358
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVT 217
LN+ +C +TD+ + L+ L L+ L +S C +TD+G+A+L L LT LNL C +T
Sbjct: 359 LNLSYCKNLTDAGLAHLAPLVVLQHLNLSSCHNLTDAGLAHLTPLVALTHLNLSWCNKLT 418
Query: 218 AACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGL 275
A L L+ L +L +L+L C +L++ G + + +L+ L+L + +TD L HL L
Sbjct: 419 DAGLAHLTPLVALTHLDLRECDKLTNRGLAHLALLLTLQYLDLNYCRNLTDAGLAHLSSL 478
Query: 276 TNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLS- 332
L+ L L C + D GL +L L L L+LS + +GL HL+ L L+ + LS
Sbjct: 479 VALQHLKLCCCVSLTDAGLAHLAPLVALTHLDLSWCFNITDAGLAHLTPLVTLQHLGLSG 538
Query: 333 FTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAA 390
++D L L L +L+ L L+ +TD GLA LT L L HLDL R +T++G A
Sbjct: 539 CRRLTDVGLAHLTRLVALQHLGLNRCDNLTDAGLAHLTPLINLQHLDLSECRKLTNAGLA 598
Query: 391 YL 392
+L
Sbjct: 599 HL 600
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 70/136 (51%), Gaps = 2/136 (1%)
Query: 58 SLLSVDLSGS-DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+L +DLS ++TD+GL HL LQ L + C +++D GL HL L L L R
Sbjct: 505 ALTHLDLSWCFNITDAGLAHLTPLVTLQHLGLSGCRRLTDVGLAHLTRLVALQHLGLNRC 564
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
+ +T G+ LINL LDL C ++ + GL +L L+ L+ L+++ CN +T + +
Sbjct: 565 DNLTDAGLAHLTPLINLQHLDLSECRKLTNAGLAHLTPLVALQRLDLRCCNKLTGARLAH 624
Query: 176 LSGLTNLKSLQISCSK 191
L L + K
Sbjct: 625 FKFLVAKPHLDLRWYK 640
>gi|406830574|ref|ZP_11090168.1| hypothetical protein SpalD1_03019 [Schlesneria paludicola DSM
18645]
Length = 404
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 85/244 (34%), Positives = 121/244 (49%), Gaps = 24/244 (9%)
Query: 169 TDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG 228
TD+D+ L L+SL +S ++++ GIA L L+ LT+L+L PV A L L
Sbjct: 64 TDADVTLLKTFPELESLDLSGTQISGKGIAELSVLRSLTVLHLANLPVKNAQFKKLIELD 123
Query: 229 SLFYLNLNRCQLSD------------------------DGCEKFSKIGSLKVLNLGFNEI 264
SL L++ Q+SD G SK G L +L+L +
Sbjct: 124 SLTTLDVADTQVSDAALQGSIAHPNLTTLVLSGNRITNAGLNDLSKFGQLAILDLTQTRV 183
Query: 265 TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT 324
+DE + LK L NL L L I D GL + GL +LK L+L+ TQ+ +GL+HL GL
Sbjct: 184 SDEGMTALKRLENLTELRLSGNVITDTGLEAIGGLSHLKILDLTATQITDAGLKHLRGLN 243
Query: 325 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 384
NL + L + D + L + +L +L+ A QITD L+AL + LT LDL I
Sbjct: 244 NLNELKLGRNQVKDNGVNALVEIPTLIALDFYATQITDECLSALGQIANLTTLDLGKNPI 303
Query: 385 TDSG 388
+D G
Sbjct: 304 SDFG 307
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 82/248 (33%), Positives = 131/248 (52%), Gaps = 2/248 (0%)
Query: 142 TRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL 200
T+I G G+ L L L L++ + ++ K L L +L +L ++ ++V+D+ +
Sbjct: 85 TQISGKGIAELSVLRSLTVLHLANL-PVKNAQFKKLIELDSLTTLDVADTQVSDAALQGS 143
Query: 201 KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG 260
LT L L G +T A L+ LS G L L+L + ++SD+G ++ +L L L
Sbjct: 144 IAHPNLTTLVLSGNRITNAGLNDLSKFGQLAILDLTQTRVSDEGMTALKRLENLTELRLS 203
Query: 261 FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 320
N ITD L + GL++L+ L+L + I D GL +L GL NL L+L QV +G+ L
Sbjct: 204 GNVITDTGLEAIGGLSHLKILDLTATQITDAGLKHLRGLNNLNELKLGRNQVKDNGVNAL 263
Query: 321 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 380
+ L +++ T I+D L L +++L +L+L I+D GL LT L L + L
Sbjct: 264 VEIPTLIALDFYATQITDECLSALGQIANLTTLDLGKNPISDFGLRNLTRLRNLKEIGLV 323
Query: 381 GARITDSG 388
A +T SG
Sbjct: 324 EAPVTASG 331
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 91/337 (27%), Positives = 150/337 (44%), Gaps = 28/337 (8%)
Query: 30 DCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVD-LSGSDVTDSGLIHLKDCSNLQSLDF 88
D QD + + + K + S ++ +D + TD+ + LK L+SLD
Sbjct: 23 DDVTQDTAIQRIEALGGKVVRNQERPSSPVVQIDCRDAQEFTDADVTLLKTFPELESLDL 82
Query: 89 NFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGL 148
+ QIS G+ L L +LT L AQ K L
Sbjct: 83 S-GTQISGKGIAELSVLRSLTVLHLANLPVKNAQFKK----------------------L 119
Query: 149 VNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTL 208
+ L L L+ + + ++D+ ++ NL +L +S +++T++G+ L +L +
Sbjct: 120 IELDSLTTLDVADTQ----VSDAALQGSIAHPNLTTLVLSGNRITNAGLNDLSKFGQLAI 175
Query: 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 268
L+L V+ + +L L +L L L+ ++D G E + LK+L+L +ITD
Sbjct: 176 LDLTQTRVSDEGMTALKRLENLTELRLSGNVITDTGLEAIGGLSHLKILDLTATQITDAG 235
Query: 269 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 328
L HL+GL NL L L + D G+ L + L L+ TQ+ L L + NL +
Sbjct: 236 LKHLRGLNNLNELKLGRNQVKDNGVNALVEIPTLIALDFYATQITDECLSALGQIANLTT 295
Query: 329 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 365
++L ISD LR L L +LK + L +T +GL
Sbjct: 296 LDLGKNPISDFGLRNLTRLRNLKEIGLVEAPVTASGL 332
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 99/212 (46%), Gaps = 27/212 (12%)
Query: 185 LQISC---SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
+QI C + TD+ + LK +L L+L G ++ + LS L SL L+L +
Sbjct: 53 VQIDCRDAQEFTDADVTLLKTFPELESLDLSGTQISGKGIAELSVLRSLTVLHLANLPVK 112
Query: 242 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN 301
+ +K ++ SL L++ +++D L +G + N
Sbjct: 113 NAQFKKLIELDSLTTLDVADTQVSDAAL---------------------QGSI---AHPN 148
Query: 302 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 361
L L LS ++ ++GL LS L ++L+ T +SD + L L +L L L IT
Sbjct: 149 LTTLVLSGNRITNAGLNDLSKFGQLAILDLTQTRVSDEGMTALKRLENLTELRLSGNVIT 208
Query: 362 DTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
DTGL A+ L+ L LDL +ITD+G +LR
Sbjct: 209 DTGLEAIGGLSHLKILDLTATQITDAGLKHLR 240
>gi|301098037|ref|XP_002898112.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262105473|gb|EEY63525.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 648
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 115/421 (27%), Positives = 185/421 (43%), Gaps = 52/421 (12%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
+LP +++ + L L + +A L + L + V D W D I
Sbjct: 141 VLPPELALSVLQWLKQHYVLDKPQFQALTPLLLLEWNLADHQDVEDSWFDDIPE------ 194
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLE---HLRGLSNLTSLSFRRNN 117
K +++S+D + CI + G E H+ L L SF+
Sbjct: 195 -----------------KTLESVKSIDVSGCIHLQQLGSEWGRHVNRLPELLVASFQGCT 237
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLV-NLKGLMKLESLNIKWCNCITDSDMKPL 176
++ + ++ L L+L C + V +L+ L L+SL + C +TD +K L
Sbjct: 238 GLSKETIEMLKLSTKLTTLNLSGCANVDDKCVKSLRQLEHLKSLQLVGCRRLTDKGVKRL 297
Query: 177 SGLTNLKSLQI-SCSKVTDSGI-AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
LT L+ L++ C K+TD ++ KL L++ C ++ + + + SL L
Sbjct: 298 FKLTKLEKLRLGRCRKLTDDAFGGFVDSFPKLRELDVSNCRLSERAMQHIGQVKSLEVLV 357
Query: 235 LNRCQ-LSDDG-----------------CEKFSKIGS----LKVLNLGFNEITDECLVHL 272
+ CQ +SD G C K I + L+VL LG+ + L
Sbjct: 358 IRGCQDISDVGMASLAELTNLKYFDARHCGKIHSIPTEWTQLEVLLLGYTAFAESDAAVL 417
Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL-SGLTNLESINL 331
+ LT L+ L L C I G ++ L +L+ LE+++T + S L + + NL+++N+
Sbjct: 418 QYLTKLQELELRKCRIMKRGFQFISRLKHLERLEVAETALTDSRLLEICNNAINLKALNV 477
Query: 332 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
S T ISD L L L+ L LD IT+ LA L+ L L LDLFGA ITD+G +
Sbjct: 478 SNTEISDSGTTGLTKLKELRILGLDTSGITNRALANLSFLPQLERLDLFGANITDNGLMH 537
Query: 392 L 392
L
Sbjct: 538 L 538
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 92/315 (29%), Positives = 152/315 (48%), Gaps = 7/315 (2%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
L+ LD + C ++S+ ++H+ + +L L R I+ GM + A L NL D
Sbjct: 327 PKLRELDVSNC-RLSERAMQHIGQVKSLEVLVIRGCQDISDVGMASLAELTNLKYFDARH 385
Query: 141 CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL 200
C +IH +LE L + + +SD L LT L+ L++ ++ G ++
Sbjct: 386 CGKIHSIPTEW---TQLEVLLLGY-TAFAESDAAVLQYLTKLQELELRKCRIMKRGFQFI 441
Query: 201 KGLQKLTLLNLEGCPVT-AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 259
L+ L L + +T + L+ + +L LN++ ++SD G +K+ L++L L
Sbjct: 442 SRLKHLERLEVAETALTDSRLLEICNNAINLKALNVSNTEISDSGTTGLTKLKELRILGL 501
Query: 260 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 319
+ IT+ L +L L LE L+L I D GL++L L L+ L + +G G+
Sbjct: 502 DTSGITNRALANLSFLPQLERLDLFGANITDNGLMHLIPLHKLQELAICGGNIGDRGVGL 561
Query: 320 LSGLTNLESINLSFT-GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 378
+S LT+L S+NLS I SL L L+SL+ LNL I+ L L+ L L L
Sbjct: 562 ISKLTSLTSLNLSQNRNIRTKSLFYLRSLTSLRCLNLSNTGISALSLRHLSPLKELQSLS 621
Query: 379 LFGARITDSGAAYLR 393
++G ++ LR
Sbjct: 622 VYGCSLSQGHIDVLR 636
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 99/352 (28%), Positives = 167/352 (47%), Gaps = 24/352 (6%)
Query: 13 ELVYSRCLTEVSLEA-FRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTD 71
+LV R LT+ ++ F+ L+ L LG+ + D L +D+S +++
Sbjct: 282 QLVGCRRLTDKGVKRLFKLTKLEKLRLGRCRKLTDDAFGGFVDSFPKLRELDVSNCRLSE 341
Query: 72 SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR---RNNAITAQ------ 122
+ H+ +L+ L C ISD G+ L L+NL R + ++I +
Sbjct: 342 RAMQHIGQVKSLEVLVIRGCQDISDVGMASLAELTNLKYFDARHCGKIHSIPTEWTQLEV 401
Query: 123 ---GMKAFAG--------LINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDS 171
G AFA L L +L+L +C + G + L LE L + +TDS
Sbjct: 402 LLLGYTAFAESDAAVLQYLTKLQELELRKCRIMKRGFQFISRLKHLERLEVAE-TALTDS 460
Query: 172 DMKPL-SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
+ + + NLK+L +S ++++DSG L L++L +L L+ +T L +LS L L
Sbjct: 461 RLLEICNNAINLKALNVSNTEISDSGTTGLTKLKELRILGLDTSGITNRALANLSFLPQL 520
Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL-DSCGIG 289
L+L ++D+G + L+ L + I D + + LT+L SLNL + I
Sbjct: 521 ERLDLFGANITDNGLMHLIPLHKLQELAICGGNIGDRGVGLISKLTSLTSLNLSQNRNIR 580
Query: 290 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 341
+ L L L +L+CL LS+T + + LRHLS L L+S+++ +S G +
Sbjct: 581 TKSLFYLRSLTSLRCLNLSNTGISALSLRHLSPLKELQSLSVYGCSLSQGHI 632
>gi|290998894|ref|XP_002682015.1| predicted protein [Naegleria gruberi]
gi|284095641|gb|EFC49271.1| predicted protein [Naegleria gruberi]
Length = 413
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 126/235 (53%), Gaps = 2/235 (0%)
Query: 160 LNIKWCNCITDS--DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
+N+K + DS +K +S + L SL I +++ G+ Y+ +++LT LN+ ++
Sbjct: 111 VNLKVSRWLLDSVDQLKFISEMKQLTSLDIYSNRIGVEGVKYISEMKQLTSLNISEIEIS 170
Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 277
+S + L L ++ ++ D+G + S++ L LN+G NEI+DE H+ +
Sbjct: 171 DEGAKYISEMKQLTSLYIHNNEIGDEGSKHISEMKQLTSLNIGCNEISDEGAKHISEMNQ 230
Query: 278 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 337
L SL++ IGDEG ++ + L L+++D ++G G +++S + L S+N+ F I
Sbjct: 231 LISLSIGYNRIGDEGFKYISEMKQLTSLDITDDEIGDEGAKYISEMKQLTSLNIGFNEIG 290
Query: 338 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
D + ++ L L SL++ +I+D G ++ + L L + I+D GA Y+
Sbjct: 291 DEGAKYISELKQLTSLDISETEISDEGAKYISEMKQLIWLTIGYNEISDKGAKYI 345
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 69/239 (28%), Positives = 127/239 (53%), Gaps = 1/239 (0%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
+ +L SL+I + N I +K +S + L SL IS +++D G Y+ +++LT L +
Sbjct: 132 MKQLTSLDI-YSNRIGVEGVKYISEMKQLTSLNISEIEISDEGAKYISEMKQLTSLYIHN 190
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
+ +S + L LN+ ++SD+G + S++ L L++G+N I DE ++
Sbjct: 191 NEIGDEGSKHISEMKQLTSLNIGCNEISDEGAKHISEMNQLISLSIGYNRIGDEGFKYIS 250
Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333
+ L SL++ IGDEG ++ + L L + ++G G +++S L L S+++S
Sbjct: 251 EMKQLTSLDITDDEIGDEGAKYISEMKQLTSLNIGFNEIGDEGAKYISELKQLTSLDISE 310
Query: 334 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
T ISD + ++ + L L + +I+D G ++ L LT LD+ +I + GA Y+
Sbjct: 311 TEISDEGAKYISEMKQLIWLTIGYNEISDKGAKYISELKQLTSLDITDNKIGNEGAKYI 369
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/247 (27%), Positives = 130/247 (52%), Gaps = 3/247 (1%)
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
G+ + + +L SLNI I+D K +S + L SL I +++ D G ++ +++L
Sbjct: 149 GVKYISEMKQLTSLNISEIE-ISDEGAKYISEMKQLTSLYIHNNEIGDEGSKHISEMKQL 207
Query: 207 TLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265
T LN+ GC ++ +S + L L++ ++ D+G + S++ L L++ +EI
Sbjct: 208 TSLNI-GCNEISDEGAKHISEMNQLISLSIGYNRIGDEGFKYISEMKQLTSLDITDDEIG 266
Query: 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 325
DE ++ + L SLN+ IGDEG ++ L L L++S+T++ G +++S +
Sbjct: 267 DEGAKYISEMKQLTSLNIGFNEIGDEGAKYISELKQLTSLDISETEISDEGAKYISEMKQ 326
Query: 326 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
L + + + ISD + ++ L L SL++ +I + G ++ + L L++ RI
Sbjct: 327 LIWLTIGYNEISDKGAKYISELKQLTSLDITDNKIGNEGAKYISEMNQLISLNIGYNRIG 386
Query: 386 DSGAAYL 392
D GA Y+
Sbjct: 387 DEGAKYI 393
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 79/308 (25%), Positives = 151/308 (49%), Gaps = 31/308 (10%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L S+D+ + + G+ ++ + L SL+ + I+ISD G +++ + LTSL +
Sbjct: 130 SEMKQLTSLDIYSNRIGVEGVKYISEMKQLTSLNIS-EIEISDEGAKYISEMKQLTSL-Y 187
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
NN I +G K ++ + +L SLNI CN I+D
Sbjct: 188 IHNNEIGDEGSK------------------------HISEMKQLTSLNIG-CNEISDEGA 222
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
K +S + L SL I +++ D G Y+ +++LT L++ + +S + L L
Sbjct: 223 KHISEMNQLISLSIGYNRIGDEGFKYISEMKQLTSLDITDDEIGDEGAKYISEMKQLTSL 282
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
N+ ++ D+G + S++ L L++ EI+DE ++ + L L + I D+G
Sbjct: 283 NIGFNEIGDEGAKYISELKQLTSLDISETEISDEGAKYISEMKQLIWLTIGYNEISDKGA 342
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
++ L L L+++D ++G+ G +++S + L S+N+ + I D + ++ + L SL
Sbjct: 343 KYISELKQLTSLDITDNKIGNEGAKYISEMNQLISLNIGYNRIGDEGAKYISEMKQLTSL 402
Query: 354 NLDARQIT 361
RQI+
Sbjct: 403 ----RQIS 406
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/234 (28%), Positives = 116/234 (49%), Gaps = 3/234 (1%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L S+ + +++ D G H+ + L SL+ C +ISD G +H+ ++ L SLS
Sbjct: 178 SEMKQLTSLYIHNNEIGDEGSKHISEMKQLTSLNIG-CNEISDEGAKHISEMNQLISLSI 236
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
N I +G K + + L LD+ G + + +L SLNI + N I D
Sbjct: 237 GYN-RIGDEGFKYISEMKQLTSLDITDDEIGDEGAKYISEMKQLTSLNIGF-NEIGDEGA 294
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
K +S L L SL IS ++++D G Y+ +++L L + ++ +S L L L
Sbjct: 295 KYISELKQLTSLDISETEISDEGAKYISEMKQLIWLTIGYNEISDKGAKYISELKQLTSL 354
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
++ ++ ++G + S++ L LN+G+N I DE ++ + L SL S G
Sbjct: 355 DITDNKIGNEGAKYISEMNQLISLNIGYNRIGDEGAKYISEMKQLTSLRQISLG 408
>gi|290970865|ref|XP_002668286.1| predicted protein [Naegleria gruberi]
gi|284081599|gb|EFC35542.1| predicted protein [Naegleria gruberi]
Length = 368
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 89/349 (25%), Positives = 174/349 (49%), Gaps = 5/349 (1%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR 103
+ DK I S+ L S+D+ + + D G+ + + L SL+ + +I D G++ +
Sbjct: 14 IGDKEAKFI-SEMKQLTSLDIYNNRIGDEGVKSISEMKQLVSLNI-YNNRIGDEGVKSII 71
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 163
+ LTSL N I +G+K + + L L++ + + +L SLNI
Sbjct: 72 EMKQLTSLDIG-GNRIGDEGVKFISEMKQLTSLNISENQIGDKEATFISEMKQLTSLNI- 129
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
+ N I D +K + + LKSL I ++++ G ++ +++L LN+ + S
Sbjct: 130 YNNRIGDEGVKSIIEMKQLKSLDIGRNQISVEGAKFISEMKQLVSLNIYNNRIDEGV-KS 188
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
+S + L LN+ ++ D + S++ L L++ N I DE + + + L SLN+
Sbjct: 189 ISEMKQLTSLNIAENRIGDKEAKFISEMKQLTSLDIYNNRIGDEGAIFISKMKQLTSLNI 248
Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
+ IGDEG+ ++ + L L++ ++G G++ +S + L S+++S I D ++
Sbjct: 249 YNNRIGDEGVKSIIEMKRLTSLDIGRNRIGDEGVKFISEMKQLASLDISENRIGDEGVKS 308
Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
++ + L SLN+ +I D G +++ + L LD+ G +I D G ++
Sbjct: 309 ISEMKQLTSLNISENRIGDEGAKSISEMKRLKSLDIGGNQIGDEGVKFI 357
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 77/277 (27%), Positives = 145/277 (52%), Gaps = 4/277 (1%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L S+++S + + D + + L SL+ + +I D G++ + + L SL
Sbjct: 95 SEMKQLTSLNISENQIGDKEATFISEMKQLTSLNI-YNNRIGDEGVKSIIEMKQLKSLDI 153
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
RN I+ +G K + + LV L++ RI G+ ++ + +L SLNI N I D +
Sbjct: 154 GRN-QISVEGAKFISEMKQLVSLNI-YNNRIDEGVKSISEMKQLTSLNI-AENRIGDKEA 210
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
K +S + L SL I +++ D G ++ +++LT LN+ + + S+ + L L
Sbjct: 211 KFISEMKQLTSLDIYNNRIGDEGAIFISKMKQLTSLNIYNNRIGDEGVKSIIEMKRLTSL 270
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
++ R ++ D+G + S++ L L++ N I DE + + + L SLN+ IGDEG
Sbjct: 271 DIGRNRIGDEGVKFISEMKQLASLDISENRIGDEGVKSISEMKQLTSLNISENRIGDEGA 330
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 330
+++ + LK L++ Q+G G++ +S + L S+N
Sbjct: 331 KSISEMKRLKSLDIGGNQIGDEGVKFISEMKQLASLN 367
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 61/227 (26%), Positives = 119/227 (52%), Gaps = 1/227 (0%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
N I D + K +S + L SL I +++ D G+ + +++L LN+ + + S+
Sbjct: 12 NQIGDKEAKFISEMKQLTSLDIYNNRIGDEGVKSISEMKQLVSLNIYNNRIGDEGVKSII 71
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
+ L L++ ++ D+G + S++ L LN+ N+I D+ + + L SLN+ +
Sbjct: 72 EMKQLTSLDIGGNRIGDEGVKFISEMKQLTSLNISENQIGDKEATFISEMKQLTSLNIYN 131
Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 345
IGDEG+ ++ + LK L++ Q+ G + +S + L S+N+ I +G ++ ++
Sbjct: 132 NRIGDEGVKSIIEMKQLKSLDIGRNQISVEGAKFISEMKQLVSLNIYNNRIDEG-VKSIS 190
Query: 346 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
+ L SLN+ +I D ++ + LT LD++ RI D GA ++
Sbjct: 191 EMKQLTSLNIAENRIGDKEAKFISEMKQLTSLDIYNNRIGDEGAIFI 237
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 95/190 (50%), Gaps = 1/190 (0%)
Query: 203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 262
+++LT L + G + +S + L L++ ++ D+G + S++ L LN+ N
Sbjct: 1 MKQLTSLIISGNQIGDKEAKFISEMKQLTSLDIYNNRIGDEGVKSISEMKQLVSLNIYNN 60
Query: 263 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 322
I DE + + + L SL++ IGDEG+ ++ + L L +S+ Q+G +S
Sbjct: 61 RIGDEGVKSIIEMKQLTSLDIGGNRIGDEGVKFISEMKQLTSLNISENQIGDKEATFISE 120
Query: 323 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 382
+ L S+N+ I D ++ + + LKSL++ QI+ G ++ + L L+++
Sbjct: 121 MKQLTSLNIYNNRIGDEGVKSIIEMKQLKSLDIGRNQISVEGAKFISEMKQLVSLNIYNN 180
Query: 383 RITDSGAAYL 392
RI D G +
Sbjct: 181 RI-DEGVKSI 189
>gi|406831735|ref|ZP_11091329.1| hypothetical protein SpalD1_08854 [Schlesneria paludicola DSM
18645]
Length = 422
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 108/374 (28%), Positives = 184/374 (49%), Gaps = 9/374 (2%)
Query: 25 LEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQ 84
+E D A + + P N+K + ++ S +L S+D+S +T+ GL L L+
Sbjct: 45 VERSSDRATVRVSFNEGPRFNEKHLHLLKSL-PNLTSLDVSAIVITEDGLRELGQLKFLR 103
Query: 85 SLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL--DLERCT 142
L + I+D GL L L +LT L+ ++T +G+K F + +++ DLE
Sbjct: 104 RLVVD-GRSITDEGLMELVDLRSLTELTIS-ATSVTDEGLKQFQSFLPQLRILSDLESVR 161
Query: 143 RI--HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL 200
R+ GG + + ++ +++ D D++ L L +L+SL + + +TD + +
Sbjct: 162 RLAGFGGEIE-RSDGRVIRISLHNKPQFGDGDIESLMSLRHLESLDLGGTSITDGALLTV 220
Query: 201 KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG 260
LQKL L L +T L +L L L L+L+R ++ D G ++ K+ L L L
Sbjct: 221 GRLQKLIQLQLPSTRITDRGLKALRNLKQLSILDLSRTRIGDVGLDEIKKL-PLTSLMLH 279
Query: 261 FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 320
++TD L+ L+ L ++ L L C I D GLV L NL L L+ T++ GLR++
Sbjct: 280 DTQVTDFGLLALQDLKEVQFLGLYKCAITDTGLVTLGRFQNLSELCLNSTRITDGGLRNV 339
Query: 321 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 380
L L + L + I+D L +L L++L L L ++TD + L L H+DL
Sbjct: 340 GQLRKLRILQLGDSQITDAGLLELRHLNNLVGLVLRGTRVTDDSVNTLKRYQNLVHIDLR 399
Query: 381 GARITDSGAAYLRS 394
T++G L++
Sbjct: 400 QTGFTEAGVTELKA 413
>gi|290970571|ref|XP_002668179.1| predicted protein [Naegleria gruberi]
gi|284081412|gb|EFC35435.1| predicted protein [Naegleria gruberi]
Length = 592
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 90/339 (26%), Positives = 172/339 (50%), Gaps = 3/339 (0%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L+S+D+S + + G + + L SLD F +I G + + + LTSL+
Sbjct: 202 SEMEQLISLDISTNVIGGEGAKFISEMKQLTSLDI-FYNRIGGEGAKLISEMKQLTSLNI 260
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
N I +G K + + L L++ G+ ++ G+ +L SLNI N I D
Sbjct: 261 S-TNEIDVEGSKLISEMKQLTSLNISGNLIGVEGVKSISGMKQLTSLNIS-GNLIGDEGA 318
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
K +S + L SL I +++ D G+ + +++LT ++ + S+S + L L
Sbjct: 319 KLISEMKQLTSLDIYNNRIGDEGVKSISEMKQLTSFDISNNLIYDEGAKSISGMKQLTSL 378
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
++ ++ +G + S+I L LN+ NEI E + G+ L SL + GIGDEG+
Sbjct: 379 TISNNRIGGEGVKFISEIKQLTSLNISKNEIDGEGAKFISGMKQLTSLTIYKNGIGDEGV 438
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
+++ + L L++S+ ++G G++ +S + L S+++S I + ++ + L SL
Sbjct: 439 KSISEMKQLTSLDISNNRIGDEGVKSISEMEQLISLDISTNVIGGEGAKFISEMKQLTSL 498
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
++ I D G+ +++ + LT L++ G +I GA ++
Sbjct: 499 DISGNLIYDEGVKSISEMKQLTSLNISGNQIGVEGAKFI 537
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 94/336 (27%), Positives = 173/336 (51%), Gaps = 7/336 (2%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L SVD+SG+ + G + + L SL+ + I I G + + G+ +LTSL N
Sbjct: 135 LTSVDISGNRIGIEGAKSISEMKQLTSLNISNNI-IGVEGAKSISGMKHLTSLDI-SGNR 192
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHG--GLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
I +G+K+ + + L+ LD+ T + G G + + +L SL+I + N I K +
Sbjct: 193 IGDEGVKSISEMEQLISLDI--STNVIGGEGAKFISEMKQLTSLDI-FYNRIGGEGAKLI 249
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
S + L SL IS +++ G + +++LT LN+ G + + S+S + L LN++
Sbjct: 250 SEMKQLTSLNISTNEIDVEGSKLISEMKQLTSLNISGNLIGVEGVKSISGMKQLTSLNIS 309
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
+ D+G + S++ L L++ N I DE + + + L S ++ + I DEG ++
Sbjct: 310 GNLIGDEGAKLISEMKQLTSLDIYNNRIGDEGVKSISEMKQLTSFDISNNLIYDEGAKSI 369
Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
+G+ L L +S+ ++G G++ +S + L S+N+S I + ++G+ L SL +
Sbjct: 370 SGMKQLTSLTISNNRIGGEGVKFISEIKQLTSLNISKNEIDGEGAKFISGMKQLTSLTIY 429
Query: 357 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
I D G+ +++ + LT LD+ RI D G +
Sbjct: 430 KNGIGDEGVKSISEMKQLTSLDISNNRIGDEGVKSI 465
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 84/333 (25%), Positives = 166/333 (49%), Gaps = 3/333 (0%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L S+++S +++ G + + L SL+ + + I G++ + G+ LTSL+
Sbjct: 250 SEMKQLTSLNISTNEIDVEGSKLISEMKQLTSLNISGNL-IGVEGVKSISGMKQLTSLNI 308
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
N I +G K + + L LD+ G+ ++ + +L S +I N I D
Sbjct: 309 S-GNLIGDEGAKLISEMKQLTSLDIYNNRIGDEGVKSISEMKQLTSFDIS-NNLIYDEGA 366
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
K +SG+ L SL IS +++ G+ ++ +++LT LN+ + +S + L L
Sbjct: 367 KSISGMKQLTSLTISNNRIGGEGVKFISEIKQLTSLNISKNEIDGEGAKFISGMKQLTSL 426
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+ + + D+G + S++ L L++ N I DE + + + L SL++ + IG EG
Sbjct: 427 TIYKNGIGDEGVKSISEMKQLTSLDISNNRIGDEGVKSISEMEQLISLDISTNVIGGEGA 486
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
++ + L L++S + G++ +S + L S+N+S I + ++ + L SL
Sbjct: 487 KFISEMKQLTSLDISGNLIYDEGVKSISEMKQLTSLNISGNQIGVEGAKFISEMKQLTSL 546
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
++ +I D G ++ + LT LD++ RI+D
Sbjct: 547 DISKNEIGDAGAKFISEMKQLTSLDVYANRISD 579
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 118/235 (50%), Gaps = 2/235 (0%)
Query: 160 LNIKWCNCITDSDMKP--LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
+N+K+ + D+ +P +SG+ L S+ IS +++ G + +++LT LN+ +
Sbjct: 111 VNVKFSSWTLDAFEQPKFISGMKQLTSVDISGNRIGIEGAKSISEMKQLTSLNISNNIIG 170
Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 277
S+S + L L+++ ++ D+G + S++ L L++ N I E + +
Sbjct: 171 VEGAKSISGMKHLTSLDISGNRIGDEGVKSISEMEQLISLDISTNVIGGEGAKFISEMKQ 230
Query: 278 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 337
L SL++ IG EG ++ + L L +S ++ G + +S + L S+N+S I
Sbjct: 231 LTSLDIFYNRIGGEGAKLISEMKQLTSLNISTNEIDVEGSKLISEMKQLTSLNISGNLIG 290
Query: 338 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
++ ++G+ L SLN+ I D G ++ + LT LD++ RI D G +
Sbjct: 291 VEGVKSISGMKQLTSLNISGNLIGDEGAKLISEMKQLTSLDIYNNRIGDEGVKSI 345
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 66/268 (24%), Positives = 129/268 (48%), Gaps = 1/268 (0%)
Query: 125 KAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
K +G+ L +D+ G ++ + +L SLNI N I K +SG+ +L S
Sbjct: 127 KFISGMKQLTSVDISGNRIGIEGAKSISEMKQLTSLNIS-NNIIGVEGAKSISGMKHLTS 185
Query: 185 LQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 244
L IS +++ D G+ + +++L L++ + +S + L L++ ++ +G
Sbjct: 186 LDISGNRIGDEGVKSISEMEQLISLDISTNVIGGEGAKFISEMKQLTSLDIFYNRIGGEG 245
Query: 245 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 304
+ S++ L LN+ NEI E + + L SLN+ IG EG+ +++G+ L
Sbjct: 246 AKLISEMKQLTSLNISTNEIDVEGSKLISEMKQLTSLNISGNLIGVEGVKSISGMKQLTS 305
Query: 305 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 364
L +S +G G + +S + L S+++ I D ++ ++ + L S ++ I D G
Sbjct: 306 LNISGNLIGDEGAKLISEMKQLTSLDIYNNRIGDEGVKSISEMKQLTSFDISNNLIYDEG 365
Query: 365 LAALTSLTGLTHLDLFGARITDSGAAYL 392
+++ + LT L + RI G ++
Sbjct: 366 AKSISGMKQLTSLTISNNRIGGEGVKFI 393
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 66/263 (25%), Positives = 123/263 (46%), Gaps = 27/263 (10%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L S+D+ + + D G+ + + L S D + + I D G + + G+ LTSL+
Sbjct: 322 SEMKQLTSLDIYNNRIGDEGVKSISEMKQLTSFDISNNL-IYDEGAKSISGMKQLTSLTI 380
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
NN I +G+K + + L L++ + G + G+ +L SL I + N I D +
Sbjct: 381 S-NNRIGGEGVKFISEIKQLTSLNISKNEIDGEGAKFISGMKQLTSLTI-YKNGIGDEGV 438
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIA------------------------YLKGLQKLTLL 209
K +S + L SL IS +++ D G+ ++ +++LT L
Sbjct: 439 KSISEMKQLTSLDISNNRIGDEGVKSISEMEQLISLDISTNVIGGEGAKFISEMKQLTSL 498
Query: 210 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
++ G + + S+S + L LN++ Q+ +G + S++ L L++ NEI D
Sbjct: 499 DISGNLIYDEGVKSISEMKQLTSLNISGNQIGVEGAKFISEMKQLTSLDISKNEIGDAGA 558
Query: 270 VHLKGLTNLESLNLDSCGIGDEG 292
+ + L SL++ + I DE
Sbjct: 559 KFISEMKQLTSLDVYANRISDEA 581
>gi|149918767|ref|ZP_01907254.1| hypothetical protein PPSIR1_31833 [Plesiocystis pacifica SIR-1]
gi|149820368|gb|EDM79784.1| hypothetical protein PPSIR1_31833 [Plesiocystis pacifica SIR-1]
Length = 541
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 80/228 (35%), Positives = 112/228 (49%)
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
C D + L L L+ L++ S VT +G+ +L L L L GC + + +L
Sbjct: 296 CPRFGDRGLFMLRYLEGLQVLELERSAVTSAGLVHLAENPALEDLTLRGCDLDSEGFTAL 355
Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284
+AL L L + L D E + SL+ L LG + D L L NLE L+L
Sbjct: 356 AALPRLRRLIVGPASLLDGKAEGLGLLVSLRELELGLDGFGDRAAQELAPLVNLERLDLG 415
Query: 285 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 344
+ + DEGL +L G+ L+ LEL T+V GL HL GL+ LE + L T + D + L
Sbjct: 416 NTAVSDEGLEHLAGMVRLRELELHHTRVTRHGLEHLQGLSALEILELDHTDVVDEGVAHL 475
Query: 345 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
A L +L+ L LD ITD G+A L L+ L L+L +T G L
Sbjct: 476 AKLGALRELRLDNTLITDVGVAHLAKLSDLERLNLANTVVTSEGVEVL 523
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 82/271 (30%), Positives = 121/271 (44%), Gaps = 24/271 (8%)
Query: 145 HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS---------------- 188
H ++ + L+SL + +T+ + PL GL +L ++ S
Sbjct: 230 HNTMLRVAKAKSLQSLAV-IDTALTNYSLHPLKGLDHLHRIEWSGQGWSNTSPQYLRDLP 288
Query: 189 -------CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
C + D G+ L+ L+ L +L LE VT+A L L+ +L L L C L
Sbjct: 289 IDELICDCPRFGDRGLFMLRYLEGLQVLELERSAVTSAGLVHLAENPALEDLTLRGCDLD 348
Query: 242 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN 301
+G + + L+ L +G + D L L +L L L G GD L L N
Sbjct: 349 SEGFTALAALPRLRRLIVGPASLLDGKAEGLGLLVSLRELELGLDGFGDRAAQELAPLVN 408
Query: 302 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 361
L+ L+L +T V GL HL+G+ L + L T ++ L L GLS+L+ L LD +
Sbjct: 409 LERLDLGNTAVSDEGLEHLAGMVRLRELELHHTRVTRHGLEHLQGLSALEILELDHTDVV 468
Query: 362 DTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
D G+A L L L L L ITD G A+L
Sbjct: 469 DEGVAHLAKLGALRELRLDNTLITDVGVAHL 499
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 76/244 (31%), Positives = 124/244 (50%), Gaps = 7/244 (2%)
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
+G+ L L L+LER GLV+L LE L ++ C+ ++ L+ L
Sbjct: 302 RGLFMLRYLEGLQVLELERSAVTSAGLVHLAENPALEDLTLRGCDLDSEG-FTALAALPR 360
Query: 182 LKSLQISCSKVTD---SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
L+ L + + + D G+ L L++L L L+G AA L+ L +L L+L
Sbjct: 361 LRRLIVGPASLLDGKAEGLGLLVSLRELE-LGLDGFGDRAA--QELAPLVNLERLDLGNT 417
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
+SD+G E + + L+ L L +T L HL+GL+ LE L LD + DEG+ +L
Sbjct: 418 AVSDEGLEHLAGMVRLRELELHHTRVTRHGLEHLQGLSALEILELDHTDVVDEGVAHLAK 477
Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
L L+ L L +T + G+ HL+ L++LE +NL+ T ++ + L+ L L+ +NL
Sbjct: 478 LGALRELRLDNTLITDVGVAHLAKLSDLERLNLANTVVTSEGVEVLSALPRLEVVNLAGT 537
Query: 359 QITD 362
+ D
Sbjct: 538 RARD 541
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 69/251 (27%), Positives = 115/251 (45%), Gaps = 27/251 (10%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
++L S VT +GL+HL + L+ L C + +
Sbjct: 316 LELERSAVTSAGLVHLAENPALEDLTLRGC--------------------------DLDS 349
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
+G A A L L +L + + + G L L+ L L + + D + L+ L N
Sbjct: 350 EGFTALAALPRLRRLIVGPASLLDGKAEGLGLLVSLRELELG-LDGFGDRAAQELAPLVN 408
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
L+ L + + V+D G+ +L G+ +L L L VT L+ L L +L L L+ +
Sbjct: 409 LERLDLGNTAVSDEGLEHLAGMVRLRELELHHTRVTRHGLEHLQGLSALEILELDHTDVV 468
Query: 242 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN 301
D+G +K+G+L+ L L ITD + HL L++LE LNL + + EG+ L+ L
Sbjct: 469 DEGVAHLAKLGALRELRLDNTLITDVGVAHLAKLSDLERLNLANTVVTSEGVEVLSALPR 528
Query: 302 LKCLELSDTQV 312
L+ + L+ T+
Sbjct: 529 LEVVNLAGTRA 539
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 84/193 (43%), Gaps = 44/193 (22%)
Query: 22 EVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCS 81
E+ L+ F D A Q+L P VN L +DL + V+D GL HL
Sbjct: 389 ELGLDGFGDRAAQELA----PLVN-------------LERLDLGNTAVSDEGLEHLAGMV 431
Query: 82 NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC 141
L+ L+ + +++ GLEHL+GLS L L + + G+ +L KL R
Sbjct: 432 RLRELELHHT-RVTRHGLEHLQGLSALEILELDHTDVVD-------EGVAHLAKLGALRE 483
Query: 142 TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLK 201
R+ L ITD + L+ L++L+ L ++ + VT G+ L
Sbjct: 484 LRLDNTL-------------------ITDVGVAHLAKLSDLERLNLANTVVTSEGVEVLS 524
Query: 202 GLQKLTLLNLEGC 214
L +L ++NL G
Sbjct: 525 ALPRLEVVNLAGT 537
>gi|54294508|ref|YP_126923.1| hypothetical protein lpl1579 [Legionella pneumophila str. Lens]
gi|53754340|emb|CAH15819.1| hypothetical protein lpl1579 [Legionella pneumophila str. Lens]
Length = 464
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 107/349 (30%), Positives = 165/349 (47%), Gaps = 4/349 (1%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR 103
+ D+ +A+ SL +++L +++ D G L +L +L+ ++ I G + L
Sbjct: 56 IGDEGAKALAAN-QSLSTLNLRANNIGDEGAKALAANQSLSTLNLSYN-NIGAEGAKALA 113
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 163
+L++L+ R NN I +G KA A +L L+L G L L +LN++
Sbjct: 114 ANQSLSTLNLRANN-IGDEGAKALAANQSLSTLNLRYNNIGDEGAKALAANQSLSTLNLR 172
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
N I D K L+ +L +L +S + + G L Q L+ LNL + A +
Sbjct: 173 -NNNIGDEGAKALAANQSLSTLNLSYNNIRAEGAKALAANQSLSTLNLRYNNIRAEGAKA 231
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
L+A SL LNL+ + D+G + + SL LNL +N I DE L +L +LNL
Sbjct: 232 LAANQSLSTLNLSYNNIGDEGAKALAANQSLSTLNLSYNNIGDEGAKALAANQSLSTLNL 291
Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
IGDEG L +L L LS + + G + L+ +L ++NLS+ I D +
Sbjct: 292 SYNNIGDEGAKALAANQSLSTLNLSYNNIRAEGAKALAANQSLSTLNLSYNNIGDEGAKA 351
Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
LA SL +LNL I G AL + L+ L+L I D GA L
Sbjct: 352 LAANQSLSTLNLSYNNIRAEGAKALAANQSLSTLNLSYNNIGDEGAKAL 400
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 94/315 (29%), Positives = 147/315 (46%), Gaps = 3/315 (0%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
SL +++L +++ D G L +L +L+ + I D G + L +L++L+ R NN
Sbjct: 117 SLSTLNLRANNIGDEGAKALAANQSLSTLNLRYN-NIGDEGAKALAANQSLSTLNLRNNN 175
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
I +G KA A +L L+L G L L +LN+++ N I K L+
Sbjct: 176 -IGDEGAKALAANQSLSTLNLSYNNIRAEGAKALAANQSLSTLNLRYNN-IRAEGAKALA 233
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
+L +L +S + + D G L Q L+ LNL + +L+A SL LNL+
Sbjct: 234 ANQSLSTLNLSYNNIGDEGAKALAANQSLSTLNLSYNNIGDEGAKALAANQSLSTLNLSY 293
Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
+ D+G + + SL LNL +N I E L +L +LNL IGDEG L
Sbjct: 294 NNIGDEGAKALAANQSLSTLNLSYNNIRAEGAKALAANQSLSTLNLSYNNIGDEGAKALA 353
Query: 298 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 357
+L L LS + + G + L+ +L ++NLS+ I D + L LK N
Sbjct: 354 ANQSLSTLNLSYNNIRAEGAKALAANQSLSTLNLSYNNIGDEGAKALNETDPLKRANYGR 413
Query: 358 RQITDTGLAALTSLT 372
DTG+ +L L+
Sbjct: 414 EAGMDTGVPSLARLS 428
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 78/237 (32%), Positives = 115/237 (48%), Gaps = 1/237 (0%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215
+++SLN++ N I D K L+ +L +L + + + D G L Q L+ LNL
Sbjct: 45 EIKSLNLR-NNNIGDEGAKALAANQSLSTLNLRANNIGDEGAKALAANQSLSTLNLSYNN 103
Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 275
+ A +L+A SL LNL + D+G + + SL LNL +N I DE L
Sbjct: 104 IGAEGAKALAANQSLSTLNLRANNIGDEGAKALAANQSLSTLNLRYNNIGDEGAKALAAN 163
Query: 276 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 335
+L +LNL + IGDEG L +L L LS + + G + L+ +L ++NL +
Sbjct: 164 QSLSTLNLRNNNIGDEGAKALAANQSLSTLNLSYNNIRAEGAKALAANQSLSTLNLRYNN 223
Query: 336 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
I + LA SL +LNL I D G AL + L+ L+L I D GA L
Sbjct: 224 IRAEGAKALAANQSLSTLNLSYNNIGDEGAKALAANQSLSTLNLSYNNIGDEGAKAL 280
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 96/212 (45%)
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
NL + +++ + + + +L ++ LNL + +L+A SL LNL +
Sbjct: 21 NLSNQKLNAQDIKELIVPFLNTNPEIKSLNLRNNNIGDEGAKALAANQSLSTLNLRANNI 80
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
D+G + + SL LNL +N I E L +L +LNL + IGDEG L
Sbjct: 81 GDEGAKALAANQSLSTLNLSYNNIGAEGAKALAANQSLSTLNLRANNIGDEGAKALAANQ 140
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
+L L L +G G + L+ +L ++NL I D + LA SL +LNL I
Sbjct: 141 SLSTLNLRYNNIGDEGAKALAANQSLSTLNLRNNNIGDEGAKALAANQSLSTLNLSYNNI 200
Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
G AL + L+ L+L I GA L
Sbjct: 201 RAEGAKALAANQSLSTLNLRYNNIRAEGAKAL 232
>gi|290973802|ref|XP_002669636.1| predicted protein [Naegleria gruberi]
gi|284083186|gb|EFC36892.1| predicted protein [Naegleria gruberi]
Length = 548
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 116/353 (32%), Positives = 169/353 (47%), Gaps = 20/353 (5%)
Query: 46 DKWMDVIAS---QGSSLLSVDLSGSDVTDS--GLIHLKDCSNLQSLDFNFCI-QISDGGL 99
+KW D I + +LS+ + G ++ + G I K NL LD C +I +
Sbjct: 76 EKWTDFIERSNLEMDKVLSLTIDGVELIEEQCGTISTK-LVNLTQLDL--CRNKIKPTVV 132
Query: 100 EHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 159
+ L L+NL L+ +N I G K + L +L LDL G L L L
Sbjct: 133 KGLSSLTNLKKLNLG-HNEIGNDGAKHVSSLTHLTALDLFDNGIGPNGAQRLSSLTNLTQ 191
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
LN+ N I D+ + +S LTNL L + +K+ +G+ L+GL+KLT L+L G +
Sbjct: 192 LNL-GNNEIGDAGAEHISSLTNLTQLNLRITKLGANGVKSLRGLKKLTELDLSGNQIGYE 250
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+++LS L +L LNL +++ DG E+ + +L L+L HL L NL
Sbjct: 251 GVNNLSELKNLKKLNLGNNRITGDGAERLCGLENLTELDLRAE--------HLSQLKNLT 302
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
+NL IG G L L NL L L +G+ L L NL ++L + I D
Sbjct: 303 QINLCLNQIGPNGAERLCELTNLTQLNLRSNLIGAIKAESLCKLENLTQLDLGYNRIEDD 362
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
++L+ L L L+L QI G +L+ LT LTHLDL G I D GA +L
Sbjct: 363 GAQRLSKLKKLTQLDLSGNQIGSIGAQSLSELTNLTHLDLNGNGIED-GAQHL 414
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 112/362 (30%), Positives = 175/362 (48%), Gaps = 38/362 (10%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++L +++ + G H+ ++L +LD F I G + L L+NLT L+ N
Sbjct: 139 TNLKKLNLGHNEIGNDGAKHVSSLTHLTALDL-FDNGIGPNGAQRLSSLTNLTQLNLG-N 196
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
N I G + + L NL +L+L R T++ G+ +L+GL KL L++ N I +
Sbjct: 197 NEIGDAGAEHISSLTNLTQLNL-RITKLGANGVKSLRGLKKLTELDLSG-NQIGYEGVNN 254
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
LS L NLK L + +++T G L GL+ LT L+L + LS L +L +NL
Sbjct: 255 LSELKNLKKLNLGNNRITGDGAERLCGLENLTELDLRA--------EHLSQLKNLTQINL 306
Query: 236 NRCQLSDDGCEKFSK-------------IGSLKV-----------LNLGFNEITDECLVH 271
Q+ +G E+ + IG++K L+LG+N I D+
Sbjct: 307 CLNQIGPNGAERLCELTNLTQLNLRSNLIGAIKAESLCKLENLTQLDLGYNRIEDDGAQR 366
Query: 272 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 331
L L L L+L IG G +L+ L NL L+L+ + G +HLS L L + L
Sbjct: 367 LSKLKKLTQLDLSGNQIGSIGAQSLSELTNLTHLDLNGNGI-EDGAQHLSKLKKLTRLGL 425
Query: 332 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
+ I D + L+ L+ L L+LD I DTG L+ L +T+L L I +G +
Sbjct: 426 NDNRIGDDGAKYLSELNKLTHLSLDNNGIGDTGAECLSKLKNITYLSLDDNEIETAGKKH 485
Query: 392 LR 393
LR
Sbjct: 486 LR 487
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 92/306 (30%), Positives = 141/306 (46%), Gaps = 42/306 (13%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++L +++ D+G H+ +NL L+ ++ G++ LRGL LT L N
Sbjct: 187 TNLTQLNLGNNEIGDAGAEHISSLTNLTQLNLRIT-KLGANGVKSLRGLKKLTELDLSGN 245
Query: 117 -----------------------NAITAQGMKAFAGLINLVKLDL--------ERCTRIH 145
N IT G + GL NL +LDL + T+I+
Sbjct: 246 QIGYEGVNNLSELKNLKKLNLGNNRITGDGAERLCGLENLTELDLRAEHLSQLKNLTQIN 305
Query: 146 --------GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGI 197
G L L L LN++ N I + L L NL L + +++ D G
Sbjct: 306 LCLNQIGPNGAERLCELTNLTQLNLR-SNLIGAIKAESLCKLENLTQLDLGYNRIEDDGA 364
Query: 198 AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 257
L L+KLT L+L G + + SLS L +L +L+LN + +DG + SK+ L L
Sbjct: 365 QRLSKLKKLTQLDLSGNQIGSIGAQSLSELTNLTHLDLNGNGI-EDGAQHLSKLKKLTRL 423
Query: 258 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 317
L N I D+ +L L L L+LD+ GIGD G L+ L N+ L L D ++ ++G
Sbjct: 424 GLNDNRIGDDGAKYLSELNKLTHLSLDNNGIGDTGAECLSKLKNITYLSLDDNEIETAGK 483
Query: 318 RHLSGL 323
+HL L
Sbjct: 484 KHLRKL 489
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 108/363 (29%), Positives = 164/363 (45%), Gaps = 47/363 (12%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
L+ L LG ND V S + L ++DL + + +G L +NL L+
Sbjct: 141 LKKLNLGHNEIGNDGAKHV--SSLTHLTALDLFDNGIGPNGAQRLSSLTNLTQLNLGNN- 197
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
+I D G EH+ L+NLT L+ R + A G+K+ GL L +LDL + G+ NL
Sbjct: 198 EIGDAGAEHISSLTNLTQLNLRIT-KLGANGVKSLRGLKKLTELDLSGNQIGYEGVNNLS 256
Query: 153 GLMKLESLNI-----------KWC--NCITDSDMKP--LSGLTNLKSLQISCSKVTDSGI 197
L L+ LN+ + C +T+ D++ LS L NL + + +++ +G
Sbjct: 257 ELKNLKKLNLGNNRITGDGAERLCGLENLTELDLRAEHLSQLKNLTQINLCLNQIGPNGA 316
Query: 198 AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 257
L L LT LNL + A +SL L +L L+L ++ DDG ++ SK+ L L
Sbjct: 317 ERLCELTNLTQLNLRSNLIGAIKAESLCKLENLTQLDLGYNRIEDDGAQRLSKLKKLTQL 376
Query: 258 NLGFNEITDECLVHLKGLTNLESLNLDSCG-----------------------IGDEGLV 294
+L N+I L LTNL L+L+ G IGD+G
Sbjct: 377 DLSGNQIGSIGAQSLSELTNLTHLDLNGNGIEDGAQHLSKLKKLTRLGLNDNRIGDDGAK 436
Query: 295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG---SLRKLA--GLSS 349
L+ L L L L + +G +G LS L N+ ++L I LRKL GL S
Sbjct: 437 YLSELNKLTHLSLDNNGIGDTGAECLSKLKNITYLSLDDNEIETAGKKHLRKLIRCGLCS 496
Query: 350 LKS 352
+++
Sbjct: 497 IRT 499
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 78/143 (54%), Gaps = 6/143 (4%)
Query: 255 KVLNL---GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 311
KVL+L G I ++C L NL L+L I + L+ L NLK L L +
Sbjct: 91 KVLSLTIDGVELIEEQCGTISTKLVNLTQLDLCRNKIKPTVVKGLSSLTNLKKLNLGHNE 150
Query: 312 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 371
+G+ G +H+S LT+L +++L GI ++L+ L++L LNL +I D G ++SL
Sbjct: 151 IGNDGAKHVSSLTHLTALDLFDNGIGPNGAQRLSSLTNLTQLNLGNNEIGDAGAEHISSL 210
Query: 372 TGLTHLDLFGARITDSGAAYLRS 394
T LT L+L RIT GA ++S
Sbjct: 211 TNLTQLNL---RITKLGANGVKS 230
>gi|46445968|ref|YP_007333.1| hypothetical protein pc0334 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46399609|emb|CAF23058.1| hypothetical protein pc0334 [Candidatus Protochlamydia amoebophila
UWE25]
Length = 616
Score = 111 bits (278), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 90/249 (36%), Positives = 132/249 (53%), Gaps = 32/249 (12%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNA-ITAQGMKAFAGLINLVKLDLERCTRI-HGGLVN 150
+++D L HL L NL L+ + + +T G+ L+NL L+L C ++ GL +
Sbjct: 330 ELTDARLAHLAPLVNLRHLNLSGDMSNLTDAGLAHLTPLVNLQHLNLHWCDKLTDDGLAH 389
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLL 209
L+ L+ L+ LN+ CN +TD+ + L L NL+ L +S C K+TD+G+A+L L L L
Sbjct: 390 LRSLVNLQHLNLHCCNKLTDAGLAHLRPLVNLQHLNLSKCPKLTDAGLAHLTPLVNLQHL 449
Query: 210 NLEGCPV--TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 267
+L CP+ T A L L+ L L YLNL C NE+TD
Sbjct: 450 DLSWCPLNFTGAGLAYLAPLIDLQYLNLCCC-----------------------NELTDI 486
Query: 268 CLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELS--DTQVGSSGLRHLSGLT 324
L+HL L NL+ L+L C + D GL++LT L NL+ L L D + +GL HL+ L
Sbjct: 487 GLMHLTPLVNLQHLDLSGCDNLTDAGLMHLTSLVNLQHLNLRCCDN-LTKTGLMHLTSLV 545
Query: 325 NLESINLSF 333
NL + LS+
Sbjct: 546 NLRQLVLSW 554
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 98/295 (33%), Positives = 149/295 (50%), Gaps = 48/295 (16%)
Query: 11 FNELVYSRCLTEVSLEAFRDCALQDLCLGQY-PGVNDKWMDVIASQGSSLLSVDLSG--S 67
F+E Y LT++ L A + L D L P VN L ++LSG S
Sbjct: 312 FSEYAY---LTDIHLLALKSWELTDARLAHLAPLVN-------------LRHLNLSGDMS 355
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
++TD+GL HL NLQ L+ ++C +++D GL HLR L NL L+ N +T G+
Sbjct: 356 NLTDAGLAHLTPLVNLQHLNLHWCDKLTDDGLAHLRSLVNLQHLNLHCCNKLTDAGLAHL 415
Query: 128 AGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNC-ITDSDMKPLSGLTNLKSL 185
L+NL L+L +C ++ GL +L L+ L+ L++ WC T + + L+ L +L+ L
Sbjct: 416 RPLVNLQHLNLSKCPKLTDAGLAHLTPLVNLQHLDLSWCPLNFTGAGLAYLAPLIDLQYL 475
Query: 186 QI-SCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQLSDD 243
+ C+++TD G+ +L L L L+L GC +T A L L++L +L +LNL RC
Sbjct: 476 NLCCCNELTDIGLMHLTPLVNLQHLDLSGCDNLTDAGLMHLTSLVNLQHLNL-RC----- 529
Query: 244 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD--SCGIGDEGLVNL 296
C+ +K G L+HL L NL L L S + + GL +L
Sbjct: 530 -CDNLTKTG----------------LMHLTSLVNLRQLVLSWYSPDLNEAGLAHL 567
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 85/235 (36%), Positives = 129/235 (54%), Gaps = 9/235 (3%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
L + E + + N I + + LT++ L + ++TD+ +A+L L L LNL G
Sbjct: 293 LTEFEKIINYFANAIEGLNFSEYAYLTDIHLLALKSWELTDARLAHLAPLVNLRHLNLSG 352
Query: 214 --CPVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLG-FNEITDECL 269
+T A L L+ L +L +LNL+ C +L+DDG + +L+ LNL N++TD L
Sbjct: 353 DMSNLTDAGLAHLTPLVNLQHLNLHWCDKLTDDGLAHLRSLVNLQHLNLHCCNKLTDAGL 412
Query: 270 VHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELS--DTQVGSSGLRHLSGLTNL 326
HL+ L NL+ LNL C + D GL +LT L NL+ L+LS +GL +L+ L +L
Sbjct: 413 AHLRPLVNLQHLNLSKCPKLTDAGLAHLTPLVNLQHLDLSWCPLNFTGAGLAYLAPLIDL 472
Query: 327 ESINL-SFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDL 379
+ +NL ++D L L L +L+ L+L +TD GL LTSL L HL+L
Sbjct: 473 QYLNLCCCNELTDIGLMHLTPLVNLQHLDLSGCDNLTDAGLMHLTSLVNLQHLNL 527
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 83/212 (39%), Positives = 118/212 (55%), Gaps = 18/212 (8%)
Query: 195 SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL--NRCQLSDDGCEKFSKIG 252
S AYL + LL L+ +T A L L+ L +L +LNL + L+D G + +
Sbjct: 313 SEYAYLTDIH---LLALKSWELTDARLAHLAPLVNLRHLNLSGDMSNLTDAGLAHLTPLV 369
Query: 253 SLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSD- 309
+L+ LNL + +++TD+ L HL+ L NL+ LNL C + D GL +L L NL+ L LS
Sbjct: 370 NLQHLNLHWCDKLTDDGLAHLRSLVNLQHLNLHCCNKLTDAGLAHLRPLVNLQHLNLSKC 429
Query: 310 TQVGSSGLRHLSGLTNLESINLS-----FTGISDGSLRKLAGLSSLKSLNLDA-RQITDT 363
++ +GL HL+ L NL+ ++LS FTG L LA L L+ LNL ++TD
Sbjct: 430 PKLTDAGLAHLTPLVNLQHLDLSWCPLNFTG---AGLAYLAPLIDLQYLNLCCCNELTDI 486
Query: 364 GLAALTSLTGLTHLDLFGA-RITDSGAAYLRS 394
GL LT L L HLDL G +TD+G +L S
Sbjct: 487 GLMHLTPLVNLQHLDLSGCDNLTDAGLMHLTS 518
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Query: 312 VGSSGLRHLSGLTNLESINLSFTGISDG-SLRKLAGLSSLKSLNLDARQITDTGLAALTS 370
V SS L S LT E I F +G + + A L+ + L L + ++TD LA L
Sbjct: 282 VVSSLLNQASHLTEFEKIINYFANAIEGLNFSEYAYLTDIHLLALKSWELTDARLAHLAP 341
Query: 371 LTGLTHLDLFG--ARITDSGAAYL 392
L L HL+L G + +TD+G A+L
Sbjct: 342 LVNLRHLNLSGDMSNLTDAGLAHL 365
>gi|283778672|ref|YP_003369427.1| hypothetical protein Psta_0882 [Pirellula staleyi DSM 6068]
gi|283437125|gb|ADB15567.1| hypothetical protein Psta_0882 [Pirellula staleyi DSM 6068]
Length = 450
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 68/240 (28%), Positives = 121/240 (50%), Gaps = 4/240 (1%)
Query: 161 NIKWCNC----ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
NI+W + +TD+ + L+ + +K L + +K++ G+A L L L L+L+ P+
Sbjct: 204 NIQWLSLEGSDVTDAVLPKLAKIPEIKRLFLGSTKLSGGGLATLAPLVDLEYLSLKQLPI 263
Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 276
L L L L L+ +++D G K K L L L +TDE ++ + ++
Sbjct: 264 DDRDLQELPEFPKLMSLGLDFTEVTDAGLTKLPKFAMLDTLWLDATRVTDEGMLEVAKIS 323
Query: 277 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 336
L SL + + + G +L L +L+ L L Q+ L+HL GL N+E + L T +
Sbjct: 324 TLRSLFMPATQVKGPGFSHLMKLASLRYLSLKGVQLDDVALQHLVGLENIEILGLDHTNV 383
Query: 337 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRSKF 396
+D + +L G++ LK+L L +TD + +L+ + L + L G+ ++ GA LR +
Sbjct: 384 TDKQIEQLVGMTRLKTLWLSKTAVTDGAIESLSKIRSLQTVYLHGSEVSADGAERLRREL 443
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 87/172 (50%)
Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 280
+D + LG++ +L+L ++D K +KI +K L LG +++ L L L +LE
Sbjct: 196 VDHVVQLGNIQWLSLEGSDVTDAVLPKLAKIPEIKRLFLGSTKLSGGGLATLAPLVDLEY 255
Query: 281 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 340
L+L I D L L L L L T+V +GL L L+++ L T ++D
Sbjct: 256 LSLKQLPIDDRDLQELPEFPKLMSLGLDFTEVTDAGLTKLPKFAMLDTLWLDATRVTDEG 315
Query: 341 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
+ ++A +S+L+SL + A Q+ G + L L L +L L G ++ D +L
Sbjct: 316 MLEVAKISTLRSLFMPATQVKGPGFSHLMKLASLRYLSLKGVQLDDVALQHL 367
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 89/183 (48%), Gaps = 5/183 (2%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+ D L L + L SL +F +++D GL L + L +L +T +GM A
Sbjct: 263 IDDRDLQELPEFPKLMSLGLDFT-EVTDAGLTKLPKFAMLDTLWLDATR-VTDEGMLEVA 320
Query: 129 GLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
+ L L + T++ G G +L L L L++K + D ++ L GL N++ L +
Sbjct: 321 KISTLRSLFMP-ATQVKGPGFSHLMKLASLRYLSLKGVQ-LDDVALQHLVGLENIEILGL 378
Query: 188 SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 247
+ VTD I L G+ +L L L VT ++SLS + SL + L+ ++S DG E+
Sbjct: 379 DHTNVTDKQIEQLVGMTRLKTLWLSKTAVTDGAIESLSKIRSLQTVYLHGSEVSADGAER 438
Query: 248 FSK 250
+
Sbjct: 439 LRR 441
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 93/186 (50%), Gaps = 5/186 (2%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
L+ L L Q P ++D+ + + + L+S+ L ++VTD+GL L + L +L +
Sbjct: 253 LEYLSLKQLP-IDDRDLQEL-PEFPKLMSLGLDFTEVTDAGLTKLPKFAMLDTLWLD-AT 309
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
+++D G+ + +S L SL F + G L +L L L+ L +L
Sbjct: 310 RVTDEGMLEVAKISTLRSL-FMPATQVKGPGFSHLMKLASLRYLSLKGVQLDDVALQHLV 368
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
GL +E L + N +TD ++ L G+T LK+L +S + VTD I L ++ L + L
Sbjct: 369 GLENIEILGLDHTN-VTDKQIEQLVGMTRLKTLWLSKTAVTDGAIESLSKIRSLQTVYLH 427
Query: 213 GCPVTA 218
G V+A
Sbjct: 428 GSEVSA 433
Score = 37.7 bits (86), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 40/74 (54%)
Query: 313 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 372
G G+ H+ L N++ ++L + ++D L KLA + +K L L + +++ GLA L L
Sbjct: 192 GDEGVDHVVQLGNIQWLSLEGSDVTDAVLPKLAKIPEIKRLFLGSTKLSGGGLATLAPLV 251
Query: 373 GLTHLDLFGARITD 386
L +L L I D
Sbjct: 252 DLEYLSLKQLPIDD 265
>gi|156406568|ref|XP_001641117.1| predicted protein [Nematostella vectensis]
gi|156228254|gb|EDO49054.1| predicted protein [Nematostella vectensis]
Length = 803
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 101/323 (31%), Positives = 160/323 (49%), Gaps = 29/323 (8%)
Query: 72 SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL- 130
+G HL+ L L N C +I +S L + A+T + + AF
Sbjct: 416 AGQRHLQPLVTLGVLPHNVCDKI----------ISRLVE-----DKALTPKVLHAFISCC 460
Query: 131 INLVKLDLERCTRIHGG--LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
+ +KLD C + L L+ +L L+IK C ITD ++ + L L +LQ+
Sbjct: 461 LRYIKLD---CYLLVTNDLLAELRFHRQLVHLSIKSCPIITDKALEAVVDLPALTTLQLD 517
Query: 189 CSKVTDSGIAYLKG----LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 244
+K++D G+ Y G +Q L L+L G VT SL+ L L L +++
Sbjct: 518 NTKISDKGLMYFSGHANCIQTLVHLSLNGTGVTNQGTASLADWKILRILGLENTKIT--S 575
Query: 245 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 304
+ + LK LN+ F +TDECLV L +L SLN+ + D GL +L GL L
Sbjct: 576 LDVIRHLQHLKTLNVAFTGVTDECLVALNSHPSLSSLNILQTSVTDRGLQHLKGLP-LSS 634
Query: 305 LELSDTQ-VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 363
L+LSD + + SG+++++G+T+L + LS T ++D + +L+GL+ L LN+D +TD
Sbjct: 635 LDLSDYRNITDSGVQYIAGMTSLTRLLLSNTRLTDEGMVQLSGLAKLVELNVDRTVVTDK 694
Query: 364 GLAALTSLTGLTHLDLFGARITD 386
G L++ L L L +TD
Sbjct: 695 GSRVLSNFANLQILGLSSTGVTD 717
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 115/388 (29%), Positives = 176/388 (45%), Gaps = 54/388 (13%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
+LP ++ +I + LV + LT L AF C L+ + L Y LL
Sbjct: 429 VLPHNVCDKIISRLVEDKALTPKVLHAFISCCLRYIKLDCY-----------------LL 471
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
VT+ L L+ L L C I+D LE + L LT+L N I+
Sbjct: 472 --------VTNDLLAELRFHRQLVHLSIKSCPIITDKALEAVVDLPALTTLQLD-NTKIS 522
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
+G+ F+G N ++ LV+L SLN +T+ L+
Sbjct: 523 DKGLMYFSGHANCIQT-----------LVHL-------SLN---GTGVTNQGTASLADWK 561
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
L+ L + +K+T + ++ LQ L LN+ VT CL +L++ SL LN+ + +
Sbjct: 562 ILRILGLENTKIT--SLDVIRHLQHLKTLNVAFTGVTDECLVALNSHPSLSSLNILQTSV 619
Query: 241 SDDGCEKFSKIGSLKVLNLG-FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 299
+D G + + L L+L + ITD + ++ G+T+L L L + + DEG+V L+GL
Sbjct: 620 TDRGLQHLKGL-PLSSLDLSDYRNITDSGVQYIAGMTSLTRLLLSNTRLTDEGMVQLSGL 678
Query: 300 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK--LAGLSSLKSLNLDA 357
L L + T V G R LS NL+ + LS TG++D LR L L LNL
Sbjct: 679 AKLVELNVDRTVVTDKGSRVLSNFANLQILGLSSTGVTDKLLRDGVLNRCKKLCKLNLSR 738
Query: 358 RQITDTGLAALTSLTGLTHLDLFGARIT 385
+T+ G+ L L LT L+L R+T
Sbjct: 739 TSVTNRGIKHL-ELNSLTLLNLDWTRVT 765
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 69/210 (32%), Positives = 109/210 (51%), Gaps = 11/210 (5%)
Query: 41 YPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLE 100
+ GV D+ + + S SL S+++ + VTD GL HLK L SLD + I+D G++
Sbjct: 592 FTGVTDECLVALNSH-PSLSSLNILQTSVTDRGLQHLKGLP-LSSLDLSDYRNITDSGVQ 649
Query: 101 HLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 160
++ G+++LT L N +T +GM +GL LV+L+++R G L L+ L
Sbjct: 650 YIAGMTSLTRL-LLSNTRLTDEGMVQLSGLAKLVELNVDRTVVTDKGSRVLSNFANLQIL 708
Query: 161 NIKWCNCITDSDMKPLSGLTN----LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
+ +TD ++ G+ N L L +S + VT+ GI +L+ L LTLLNL+ V
Sbjct: 709 GLS-STGVTDKLLR--DGVLNRCKKLCKLNLSRTSVTNRGIKHLE-LNSLTLLNLDWTRV 764
Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCE 246
TA C L+ +L L ++ C G E
Sbjct: 765 TADCGLLLTGCPALKALRMSNCTPPSPGDE 794
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 67/134 (50%), Gaps = 6/134 (4%)
Query: 264 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN----LKCLELSDTQVGSSGLRH 319
ITD+ L + L L +L LD+ I D+GL+ +G N L L L+ T V + G
Sbjct: 497 ITDKALEAVVDLPALTTLQLDNTKISDKGLMYFSGHANCIQTLVHLSLNGTGVTNQGTAS 556
Query: 320 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
L+ L + L T I+ SL + L LK+LN+ +TD L AL S L+ L++
Sbjct: 557 LADWKILRILGLENTKIT--SLDVIRHLQHLKTLNVAFTGVTDECLVALNSHPSLSSLNI 614
Query: 380 FGARITDSGAAYLR 393
+TD G +L+
Sbjct: 615 LQTSVTDRGLQHLK 628
>gi|290991306|ref|XP_002678276.1| predicted protein [Naegleria gruberi]
gi|284091888|gb|EFC45532.1| predicted protein [Naegleria gruberi]
Length = 445
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 101/402 (25%), Positives = 187/402 (46%), Gaps = 22/402 (5%)
Query: 6 ISQQIFNELV--------YSRCLTEVSLEAFRDCALQDLCLGQYPGVN-------DKWMD 50
IS+Q FN + + + TE +E F + + N K++
Sbjct: 39 ISKQFFNVIKERSKLFIEFKKKFTEKRIELFTKSQFMNSIVKVKFSTNLFVSIENHKFI- 97
Query: 51 VIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTS 110
S+ L S+++S + + D + + L SLD QI D G++ + + LT
Sbjct: 98 ---SEMKQLTSLNISNNQINDETAKSIIEMKRLTSLDIGGN-QIGDEGIKLISEMKQLTL 153
Query: 111 LSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD 170
L N+I +G+K + + L L++ G + + +L SL+I + N I D
Sbjct: 154 LDIS-GNSIGDKGVKPISKMKQLTSLNIYNNEIGVAGSKFIIEMKQLTSLDISY-NEIGD 211
Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
K +S L L SL +S +++ D GI + +++LTLL++ G + + +S + L
Sbjct: 212 EGAKSISELKQLTSLTVSGNQIGDEGIKLISEMKQLTLLDISGNSIGDKGVKPISKMKQL 271
Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
LN+ ++ G + ++ L L++ +NEI DE + + L SL + IGD
Sbjct: 272 TSLNIYNNEIGVAGSKFIIEMKQLTSLDISYNEIGDEGAKSISEMKQLTSLTISGNQIGD 331
Query: 291 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 350
EG+ ++ + L L++S VG G++ +S + L S+ + I + ++ + L
Sbjct: 332 EGIKLISEMKQLTLLDISGKSVGDKGVKSISKMKQLTSLTIYTNEIGVAGAKFISEMKQL 391
Query: 351 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
SL++ +I D G +++ L LT LD+ G I D G+ ++
Sbjct: 392 TSLDISYNEIGDEGAKSISELKQLTLLDISGNGIGDEGSKFI 433
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 80/321 (24%), Positives = 155/321 (48%), Gaps = 3/321 (0%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L S+D+ G+ + D G+ + + L LD + I D G++ + + LTSL+ NN
Sbjct: 127 LTSLDIGGNQIGDEGIKLISEMKQLTLLDISGN-SIGDKGVKPISKMKQLTSLNIY-NNE 184
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
I G K + L LD+ G ++ L +L SL + N I D +K +S
Sbjct: 185 IGVAGSKFIIEMKQLTSLDISYNEIGDEGAKSISELKQLTSLTVS-GNQIGDEGIKLISE 243
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
+ L L IS + + D G+ + +++LT LN+ + A + + L L+++
Sbjct: 244 MKQLTLLDISGNSIGDKGVKPISKMKQLTSLNIYNNEIGVAGSKFIIEMKQLTSLDISYN 303
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
++ D+G + S++ L L + N+I DE + + + L L++ +GD+G+ +++
Sbjct: 304 EIGDEGAKSISEMKQLTSLTISGNQIGDEGIKLISEMKQLTLLDISGKSVGDKGVKSISK 363
Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
+ L L + ++G +G + +S + L S+++S+ I D + ++ L L L++
Sbjct: 364 MKQLTSLTIYTNEIGVAGAKFISEMKQLTSLDISYNEIGDEGAKSISELKQLTLLDISGN 423
Query: 359 QITDTGLAALTSLTGLTHLDL 379
I D G + + L LD+
Sbjct: 424 GIGDEGSKFIIGMKQLKSLDI 444
>gi|290979790|ref|XP_002672616.1| predicted protein [Naegleria gruberi]
gi|284086194|gb|EFC39872.1| predicted protein [Naegleria gruberi]
Length = 559
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 87/319 (27%), Positives = 160/319 (50%), Gaps = 5/319 (1%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDF-NFCIQISDGGLEHLRGLSNLTSLS 112
S+ + L +++S +++ D G + + L SLD N I I G + + + LTSL
Sbjct: 240 SEMNQLTLLNISNNEIGDEGAKFISEMKQLISLDISNNLIDIE--GAKSISEMKQLTSLE 297
Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 172
N I +G+K + + L LD+ GG ++ + +L L I + N I D
Sbjct: 298 IYYN-EIGDEGVKFISKMEQLTSLDISGNQIGVGGAKSISEMKQLTFLQI-FSNRIGDEG 355
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
+S + L SL I +++ D G+ ++ +++LT L++ G + S+S + L +
Sbjct: 356 ANSISEMKQLTSLNIYYNQIGDEGVKFISEMEQLTSLDIGGNQIGVGGAKSISEMKQLTF 415
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
L + ++ D+G + S++ L LN+ N I DE + + L L + S IGDEG
Sbjct: 416 LQIFSNRIGDEGVKFISEMKQLTSLNISGNRIGDEGAKSISEMKQLTLLYISSNEIGDEG 475
Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
+ ++ + L L++ ++G G++ +S + L S+N+S I D ++ ++ + L S
Sbjct: 476 VKFISEMKQLTLLQIYSNRIGDEGVKSISEMKQLTSLNISGNRIGDEGVKSISEMKQLTS 535
Query: 353 LNLDARQITDTGLAALTSL 371
LN+ +I D G+ LTSL
Sbjct: 536 LNISNNRIGDEGVKLLTSL 554
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 85/342 (24%), Positives = 168/342 (49%), Gaps = 9/342 (2%)
Query: 54 SQGSSLLSVDLSGSDVTDSG---LIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTS 110
S+ L S+++SG+ + D G + +K + L D C++ G + + + LTS
Sbjct: 168 SEMKQLTSLNISGNRIGDEGAKLISEMKQLTLLNIADNRICVE----GAKSISEMKQLTS 223
Query: 111 LSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD 170
LS +N I G K + + L L++ G + + +L SL+I N I
Sbjct: 224 LSIS-DNEIGVVGAKLISEMNQLTLLNISNNEIGDEGAKFISEMKQLISLDIS-NNLIDI 281
Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
K +S + L SL+I +++ D G+ ++ +++LT L++ G + S+S + L
Sbjct: 282 EGAKSISEMKQLTSLEIYYNEIGDEGVKFISKMEQLTSLDISGNQIGVGGAKSISEMKQL 341
Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
+L + ++ D+G S++ L LN+ +N+I DE + + + L SL++ IG
Sbjct: 342 TFLQIFSNRIGDEGANSISEMKQLTSLNIYYNQIGDEGVKFISEMEQLTSLDIGGNQIGV 401
Query: 291 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 350
G +++ + L L++ ++G G++ +S + L S+N+S I D + ++ + L
Sbjct: 402 GGAKSISEMKQLTFLQIFSNRIGDEGVKFISEMKQLTSLNISGNRIGDEGAKSISEMKQL 461
Query: 351 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
L + + +I D G+ ++ + LT L ++ RI D G +
Sbjct: 462 TLLYISSNEIGDEGVKFISEMKQLTLLQIYSNRIGDEGVKSI 503
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 79/296 (26%), Positives = 149/296 (50%), Gaps = 5/296 (1%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L+S+D+S + + G + + L SL+ + +I D G++ + + LTSL
Sbjct: 264 SEMKQLISLDISNNLIDIEGAKSISEMKQLTSLEIYYN-EIGDEGVKFISKMEQLTSLDI 322
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSD 172
N I G K+ + + L L + RI G ++ + +L SLNI + N I D
Sbjct: 323 S-GNQIGVGGAKSISEMKQLTFLQI-FSNRIGDEGANSISEMKQLTSLNI-YYNQIGDEG 379
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
+K +S + L SL I +++ G + +++LT L + + + +S + L
Sbjct: 380 VKFISEMEQLTSLDIGGNQIGVGGAKSISEMKQLTFLQIFSNRIGDEGVKFISEMKQLTS 439
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
LN++ ++ D+G + S++ L +L + NEI DE + + + L L + S IGDEG
Sbjct: 440 LNISGNRIGDEGAKSISEMKQLTLLYISSNEIGDEGVKFISEMKQLTLLQIYSNRIGDEG 499
Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 348
+ +++ + L L +S ++G G++ +S + L S+N+S I D ++ L L+
Sbjct: 500 VKSISEMKQLTSLNISGNRIGDEGVKSISEMKQLTSLNISNNRIGDEGVKLLTSLN 555
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 96/399 (24%), Positives = 184/399 (46%), Gaps = 19/399 (4%)
Query: 6 ISQQIFN------ELV--YSRCLTEVSLEAFRDC----ALQDLCLGQYPGVNDKWMDVIA 53
IS+Q FN +LV + + TE +E F ++ ++ Y N K++
Sbjct: 64 ISKQFFNVIRERSKLVIQFKKKFTEKRIELFMKSQFMNSIANVKFSVYSLDNAKFI---- 119
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L S+ ++ + + D G+ + + L LD C +I G + + LTSL+
Sbjct: 120 SEMKQLTSLGIAENRIGDEGVKFISEMKQLTLLDI-CCNEIGVEGATSISEMKQLTSLNI 178
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
N I +G K + + L L++ G ++ + +L SL+I N I
Sbjct: 179 S-GNRIGDEGAKLISEMKQLTLLNIADNRICVEGAKSISEMKQLTSLSIS-DNEIGVVGA 236
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
K +S + L L IS +++ D G ++ +++L L++ + S+S + L L
Sbjct: 237 KLISEMNQLTLLNISNNEIGDEGAKFISEMKQLISLDISNNLIDIEGAKSISEMKQLTSL 296
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+ ++ D+G + SK+ L L++ N+I + + L L + S IGDEG
Sbjct: 297 EIYYNEIGDEGVKFISKMEQLTSLDISGNQIGVGGAKSISEMKQLTFLQIFSNRIGDEGA 356
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
+++ + L L + Q+G G++ +S + L S+++ I G + ++ + L L
Sbjct: 357 NSISEMKQLTSLNIYYNQIGDEGVKFISEMEQLTSLDIGGNQIGVGGAKSISEMKQLTFL 416
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
+ + +I D G+ ++ + LT L++ G RI D GA +
Sbjct: 417 QIFSNRIGDEGVKFISEMKQLTSLNISGNRIGDEGAKSI 455
>gi|46447589|ref|YP_008954.1| hypothetical protein pc1955 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46401230|emb|CAF24679.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 454
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 97/253 (38%), Positives = 138/253 (54%), Gaps = 19/253 (7%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGC 214
++E+LN + D+ + L NLK L + +C +TD G+A+L L L LNL C
Sbjct: 196 EIEALNFSGNAHLADAHLLALKNCENLKLLHLEACQAITDDGLAHLALLTSLQHLNLYFC 255
Query: 215 P-VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNE-ITDECLVH 271
+T A L L+ L +L +LNL+ C +++D G + + L+ LNL E +TD L H
Sbjct: 256 VNLTDAGLAHLTPLTALQHLNLSYCWKITDAGLAHLTPLTDLQHLNLSDCENLTDAGLAH 315
Query: 272 LKGLTNLESLNLDSC----GIGDEGLVNLTGL--CNLK-CLELSDTQVGSSGLRHLSGLT 324
L LT L LNL C +G L LTGL NLK C L+D +G HL+ LT
Sbjct: 316 LTPLTALLYLNLSKCYHLTNVGLAHLAPLTGLQYLNLKWCWNLTD-----AGFSHLASLT 370
Query: 325 NLESINLS-FTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGA 382
L+ ++LS ++D L LA L++L+ L L R +TD GLA LT LT L HLDL
Sbjct: 371 ALQHLDLSDCENLTDAGLAYLASLTALQYLGLSQCRNLTDVGLAHLTPLTALQHLDLREC 430
Query: 383 -RITDSGAAYLRS 394
++TD+G A ++
Sbjct: 431 DKVTDAGLARFKT 443
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/190 (35%), Positives = 107/190 (56%), Gaps = 4/190 (2%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
++TD+GL HL + LQ L+ ++C +I+D GL HL L++L L+ +T G+
Sbjct: 257 NLTDAGLAHLTPLTALQHLNLSYCWKITDAGLAHLTPLTDLQHLNLSDCENLTDAGLAHL 316
Query: 128 AGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
L L+ L+L +C + GL +L L L+ LN+KWC +TD+ L+ LT L+ L
Sbjct: 317 TPLTALLYLNLSKCYHLTNVGLAHLAPLTGLQYLNLKWCWNLTDAGFSHLASLTALQHLD 376
Query: 187 IS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDD 243
+S C +TD+G+AYL L L L L C +T L L+ L +L +L+L C +++D
Sbjct: 377 LSDCENLTDAGLAYLASLTALQYLGLSQCRNLTDVGLAHLTPLTALQHLDLRECDKVTDA 436
Query: 244 GCEKFSKIGS 253
G +F + +
Sbjct: 437 GLARFKTLAT 446
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 90/256 (35%), Positives = 135/256 (52%), Gaps = 9/256 (3%)
Query: 83 LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT 142
+++L+F+ ++D L L+ NL L AIT G+ A L +L L+L C
Sbjct: 197 IEALNFSGNAHLADAHLLALKNCENLKLLHLEACQAITDDGLAHLALLTSLQHLNLYFCV 256
Query: 143 RI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYL 200
+ GL +L L L+ LN+ +C ITD+ + L+ LT+L+ L +S C +TD+G+A+L
Sbjct: 257 NLTDAGLAHLTPLTALQHLNLSYCWKITDAGLAHLTPLTDLQHLNLSDCENLTDAGLAHL 316
Query: 201 KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLN 258
L L LNL C +T L L+ L L YLNL C L+D G + + +L+ L+
Sbjct: 317 TPLTALLYLNLSKCYHLTNVGLAHLAPLTGLQYLNLKWCWNLTDAGFSHLASLTALQHLD 376
Query: 259 LGFNE-ITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSS 315
L E +TD L +L LT L+ L L C + D GL +LT L L+ L+L + +V +
Sbjct: 377 LSDCENLTDAGLAYLASLTALQYLGLSQCRNLTDVGLAHLTPLTALQHLDLRECDKVTDA 436
Query: 316 GLRHLSGLTNLESINL 331
GL L S+NL
Sbjct: 437 GLARFKTLAT--SLNL 450
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 87/256 (33%), Positives = 136/256 (53%), Gaps = 10/256 (3%)
Query: 61 SVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAI 119
+++ SG + + D+ L+ LK+C NL+ L C I+D GL HL L++L L+ +
Sbjct: 199 ALNFSGNAHLADAHLLALKNCENLKLLHLEACQAITDDGLAHLALLTSLQHLNLYFCVNL 258
Query: 120 TAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
T G+ L L L+L C +I GL +L L L+ LN+ C +TD+ + L+
Sbjct: 259 TDAGLAHLTPLTALQHLNLSYCWKITDAGLAHLTPLTDLQHLNLSDCENLTDAGLAHLTP 318
Query: 179 LTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLN 236
LT L L +S C +T+ G+A+L L L LNL+ C +T A L++L +L +L+L+
Sbjct: 319 LTALLYLNLSKCYHLTNVGLAHLAPLTGLQYLNLKWCWNLTDAGFSHLASLTALQHLDLS 378
Query: 237 RCQ-LSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGL 293
C+ L+D G + + +L+ L L +TD L HL LT L+ L+L C + D GL
Sbjct: 379 DCENLTDAGLAYLASLTALQYLGLSQCRNLTDVGLAHLTPLTALQHLDLRECDKVTDAGL 438
Query: 294 VNLTGLC---NLKCLE 306
L NLK ++
Sbjct: 439 ARFKTLATSLNLKIIK 454
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 81/179 (45%), Gaps = 48/179 (26%)
Query: 261 FNEITDECLVHLKGLTN------------------------------------------L 278
FN T+E LV LKGL N +
Sbjct: 139 FNS-TEESLVGLKGLLNFAQQCQLNDLKNYLELTVVSALLNQASQLTEFQRIINHFLDEI 197
Query: 279 ESLNLD-SCGIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSF-TG 335
E+LN + + D L+ L NLK L L Q + GL HL+ LT+L+ +NL F
Sbjct: 198 EALNFSGNAHLADAHLLALKNCENLKLLHLEACQAITDDGLAHLALLTSLQHLNLYFCVN 257
Query: 336 ISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYL 392
++D L L L++L+ LNL +ITD GLA LT LT L HL+L +TD+G A+L
Sbjct: 258 LTDAGLAHLTPLTALQHLNLSYCWKITDAGLAHLTPLTDLQHLNLSDCENLTDAGLAHL 316
>gi|348682865|gb|EGZ22681.1| hypothetical protein PHYSODRAFT_491927 [Phytophthora sojae]
Length = 648
Score = 107 bits (268), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 115/403 (28%), Positives = 182/403 (45%), Gaps = 34/403 (8%)
Query: 20 LTEVSLEAFR-DCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHL 77
LT+ S+E R L L L V+DK + + S+ L S+ L G +TD G+ +L
Sbjct: 239 LTKESIEMLRFSTKLAALNLSGCVNVDDKSLKAL-SELEQLTSLQLVGCRKLTDKGVKYL 297
Query: 78 KDCSNLQSLDFNFCIQISDGGLE-------------------------HLRGLSNLTSLS 112
+ L+ L C +++D LE ++ + +L L
Sbjct: 298 AKMAKLEKLRIARCRKLTDAALEDFAMMFPKLRELDVANCRLSEKALQYIGQIKSLEVLV 357
Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 172
R I GM + +GL NL D C++IH +LE L + + +SD
Sbjct: 358 IRGCQDICDDGMSSLSGLANLKYFDARHCSKIHSIPTEW---TQLEVLLLGY-TAFAESD 413
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT-AACLDSLSALGSLF 231
L LTNL L++ ++ G ++ L L L L +T + L+ ++ SL
Sbjct: 414 AAVLQYLTNLHELELRKCRIMKRGFQFISRLTHLERLELGETALTDSGLLEICNSAKSLK 473
Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
LN++ ++SD+G +K+ L++L L IT+ L +L L LE L+L I D
Sbjct: 474 ALNISNTEISDNGAAGLAKLKELRILRLDTPGITNRALANLSFLARLERLDLFGANITDN 533
Query: 292 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT-GISDGSLRKLAGLSSL 350
GL++L L L+ L + +G G+ +S LT+L S+NLS I SL L L+ L
Sbjct: 534 GLMHLVPLHKLQELSICGGNIGDRGVGLISKLTSLTSLNLSQNRNIRTKSLFYLRALTGL 593
Query: 351 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
+ LNL I+ L L+SL L L ++G ++ LR
Sbjct: 594 RCLNLSNTGISALSLRHLSSLKELQSLSVYGCSLSQGHIDVLR 636
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 81/303 (26%), Positives = 117/303 (38%), Gaps = 99/303 (32%)
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDDGCE 246
C+ +T I L+ KL LNL GC V L +LS L L L L C +L+D G +
Sbjct: 236 CTGLTKESIEMLRFSTKLAALNLSGCVNVDDKSLKALSELEQLTSLQLVGCRKLTDKGVK 295
Query: 247 KFSKIGSLKVLNLG----------------FNE----------ITDECLVHLKGLTNLES 280
+K+ L+ L + F + ++++ L ++ + +LE
Sbjct: 296 YLAKMAKLEKLRIARCRKLTDAALEDFAMMFPKLRELDVANCRLSEKALQYIGQIKSLEV 355
Query: 281 LNLDSCG-IGDEGLVNLTGLCNLKC----------------------------------- 304
L + C I D+G+ +L+GL NLK
Sbjct: 356 LVIRGCQDICDDGMSSLSGLANLKYFDARHCSKIHSIPTEWTQLEVLLLGYTAFAESDAA 415
Query: 305 ----------LELSDTQVGSSGLRHLSGLTNLESINL----------------------- 331
LEL ++ G + +S LT+LE + L
Sbjct: 416 VLQYLTNLHELELRKCRIMKRGFQFISRLTHLERLELGETALTDSGLLEICNSAKSLKAL 475
Query: 332 --SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 389
S T ISD LA L L+ L LD IT+ LA L+ L L LDLFGA ITD+G
Sbjct: 476 NISNTEISDNGAAGLAKLKELRILRLDTPGITNRALANLSFLARLERLDLFGANITDNGL 535
Query: 390 AYL 392
+L
Sbjct: 536 MHL 538
>gi|325182005|emb|CCA16458.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 708
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 110/386 (28%), Positives = 174/386 (45%), Gaps = 65/386 (16%)
Query: 59 LLSVDLSGSD-VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
L+S++L+G +TD L L+ LQ+L + C I++ GL+HL GL L L R
Sbjct: 313 LISLNLTGCRLITDKTLYSLRHLFRLQNLHLSGCKWITEKGLQHLNGLFGLKRLYLARCV 372
Query: 118 AITAQGMKAFA-GLINLVKLDLERCT-------------RIHG------------GLVNL 151
++ Q + F NLV+LDL C+ IH GL +L
Sbjct: 373 NVSNQAFRFFPTSFPNLVELDLSHCSISDIALHFTGRLREIHSLMLKGCSRITTKGLSHL 432
Query: 152 KGLMKLESLNIKWCNCITDSDMKPLSGL----TNLKSLQISCSKVTDSGIAYLKGLQKLT 207
L KL L++++C K ++GL T L L+++C++ ++ + L ++ L
Sbjct: 433 GSLSKLRRLDVRYC--------KHVAGLSKEWTQLDMLKLACTEFKEADASILATMKTLH 484
Query: 208 LLNLEGCPVTAACLDSLSALGSLFYL-----------------NLNRCQLSDDGCEKFSK 250
L+L C V C +S L SL L +L + Q+ D C + +
Sbjct: 485 ELDLRCCLVAKGCFSFVSHLNSLVRLCVAETALTDESLIMLCKSLEKLQMLDVSCTEVTD 544
Query: 251 IGSLKV--------LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
G++++ L+L IT+ L + L L LNL + + DEG+ L L L
Sbjct: 545 SGTMEIEMLGELSELHLDTPGITNRSLERVGKLKKLARLNLFAASVTDEGVEALKRLDKL 604
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLDARQIT 361
+ L++ VG G++ LS L L S+NLS I S+ L L+ L+ LNL IT
Sbjct: 605 QDLDICSGGVGHRGVKALSQLKRLRSLNLSQNKEIRSQSVVHLEALTKLRFLNLSNTGIT 664
Query: 362 DTGLAALTSLTGLTHLDLFGARITDS 387
+ L L +L L L ++G + S
Sbjct: 665 SSCLHNLFALKELESLSVYGVVLESS 690
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 93/349 (26%), Positives = 150/349 (42%), Gaps = 55/349 (15%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
L+ L L + V+++ + +L+ +DLS ++D L + SL C
Sbjct: 363 LKRLYLARCVNVSNQAFRFFPTSFPNLVELDLSHCSISDIALHFTGRLREIHSLMLKGCS 422
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
+I+ GL HL LS L L R + G+ ++++KL CT ++
Sbjct: 423 RITTKGLSHLGSLSKLRRLDVRYCKHVA--GLSKEWTQLDMLKLA---CTEFKEADASIL 477
Query: 153 GLMK-LESLNIKWC-----------------------NCITDSDMKPL-SGLTNLKSLQI 187
MK L L+++ C +TD + L L L+ L +
Sbjct: 478 ATMKTLHELDLRCCLVAKGCFSFVSHLNSLVRLCVAETALTDESLIMLCKSLEKLQMLDV 537
Query: 188 SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 247
SC++VTDSG + LG L L+L+ +++ E+
Sbjct: 538 SCTEVTDSGTM------------------------EIEMLGELSELHLDTPGITNRSLER 573
Query: 248 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 307
K+ L LNL +TDE + LK L L+ L++ S G+G G+ L+ L L+ L L
Sbjct: 574 VGKLKKLARLNLFAASVTDEGVEALKRLDKLQDLDICSGGVGHRGVKALSQLKRLRSLNL 633
Query: 308 S-DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355
S + ++ S + HL LT L +NLS TGI+ L L L L+SL++
Sbjct: 634 SQNKEIRSQSVVHLEALTKLRFLNLSNTGITSSCLHNLFALKELESLSV 682
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 92/359 (25%), Positives = 162/359 (45%), Gaps = 36/359 (10%)
Query: 67 SDVTDSGLIHLKD--CSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM 124
SDV DS L L +QSLDF++C ++ GL+ L NL +F + + +
Sbjct: 245 SDVDDSWLEALPTHAIEQIQSLDFSYCHRLQFCGLKPQSRLPNLRVANFEGCLYLKPETI 304
Query: 125 KAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
+ L+ L+L C I L +L+ L +L++L++ C IT+ ++ L+GL LK
Sbjct: 305 QRLGFSNRLISLNLTGCRLITDKTLYSLRHLFRLQNLHLSGCKWITEKGLQHLNGLFGLK 364
Query: 184 SLQIS---------------------------CSKVTDSGIAYLKGLQKLTLLNLEGCP- 215
L ++ CS ++D + + L+++ L L+GC
Sbjct: 365 RLYLARCVNVSNQAFRFFPTSFPNLVELDLSHCS-ISDIALHFTGRLREIHSLMLKGCSR 423
Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 275
+T L L +L L L++ C+ ++++++ LK+ F E L +K
Sbjct: 424 ITTKGLSHLGSLSKLRRLDVRYCKHVAGLSKEWTQLDMLKLACTEFKEADASILATMK-- 481
Query: 276 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL-SGLTNLESINLSFT 334
L L+L C + ++ L +L L +++T + L L L L+ +++S T
Sbjct: 482 -TLHELDLRCCLVAKGCFSFVSHLNSLVRLCVAETALTDESLIMLCKSLEKLQMLDVSCT 540
Query: 335 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
++D ++ L L L+LD IT+ L + L L L+LF A +TD G L+
Sbjct: 541 EVTDSGTMEIEMLGELSELHLDTPGITNRSLERVGKLKKLARLNLFAASVTDEGVEALK 599
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 101/207 (48%), Gaps = 5/207 (2%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC 91
+L LC+ + + D+ + ++ L +D+S ++VTDSG + ++ L L +
Sbjct: 506 SLVRLCVAE-TALTDESLIMLCKSLEKLQMLDVSCTEVTDSGTMEIEMLGELSELHLD-T 563
Query: 92 IQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL 151
I++ LE + L L L+ ++T +G++A L L LD+ H G+ L
Sbjct: 564 PGITNRSLERVGKLKKLARLNLF-AASVTDEGVEALKRLDKLQDLDICSGGVGHRGVKAL 622
Query: 152 KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
L +L SLN+ I + L LT L+ L +S + +T S + L L++L L++
Sbjct: 623 SQLKRLRSLNLSQNKEIRSQSVVHLEALTKLRFLNLSNTGITSSCLHNLFALKELESLSV 682
Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRC 238
G + ++ +D L +L +L + RC
Sbjct: 683 YGVVLESSQIDELQE--NLPHLKVLRC 707
>gi|335058613|gb|AEH26502.1| leucine-rich repeat domain protein [uncultured Acidobacteria
bacterium A11]
Length = 402
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 76/257 (29%), Positives = 128/257 (49%), Gaps = 2/257 (0%)
Query: 112 SFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDS 171
S++RN+ + + A L +L+ LDL GL + L LE LN+ +TD+
Sbjct: 136 SYKRNDTLVDAWLDRLADLPDLISLDLANTGVAGPGLKVVGTLKNLERLNLT-LTPVTDA 194
Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
++ L+GLTNL+ L ++ +K T G +L L++L N PV A L +S + L
Sbjct: 195 HLEHLAGLTNLRVLSLASAKCTGEGFRFLGKLKQLENANFHFTPVNDAGLAGISTVTGLE 254
Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
L + C +D G +K+ +L+ L +G + T + L LT L L+L E
Sbjct: 255 RLEIVHCHFTDAGAPHLAKLVNLERLQIGSRDATGAAIEPLTALTKLRELDLQDNQATAE 314
Query: 292 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 351
G+ + + + +L+ L + Q+ G ++ L+NLE + + G++D +L A L L+
Sbjct: 315 GVRHASRIPSLRVLRIHG-QIKDEGAASIAQLSNLEILVANNAGLTDDALDHFARLPRLQ 373
Query: 352 SLNLDARQITDTGLAAL 368
L + +ITD LA L
Sbjct: 374 RLEIKGNKITDPALARL 390
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 72/251 (28%), Positives = 109/251 (43%), Gaps = 27/251 (10%)
Query: 46 DKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGL 105
D W+D +A L+S+DL+ + V GL + NL+ L+ ++D LEHL GL
Sbjct: 145 DAWLDRLADL-PDLISLDLANTGVAGPGLKVVGTLKNLERLNLTLT-PVTDAHLEHLAGL 202
Query: 106 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC 165
+NL LS + T +G + L L + GL + + LE L I C
Sbjct: 203 TNLRVLSLA-SAKCTGEGFRFLGKLKQLENANFHFTPVNDAGLAGISTVTGLERLEIVHC 261
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
+ TD+ L+ L NL+ LQI T + I L L KL L+L+ TA + S
Sbjct: 262 H-FTDAGAPHLAKLVNLERLQIGSRDATGAAIEPLTALTKLRELDLQDNQATAEGVRHAS 320
Query: 226 ALGSLFYLNL-----------------------NRCQLSDDGCEKFSKIGSLKVLNLGFN 262
+ SL L + N L+DD + F+++ L+ L + N
Sbjct: 321 RIPSLRVLRIHGQIKDEGAASIAQLSNLEILVANNAGLTDDALDHFARLPRLQRLEIKGN 380
Query: 263 EITDECLVHLK 273
+ITD L L+
Sbjct: 381 KITDPALARLQ 391
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 73/256 (28%), Positives = 115/256 (44%), Gaps = 25/256 (9%)
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
K + + D+ + L+ L +L SL ++ + V G+ + L+ L LNL PVT A L+
Sbjct: 138 KRNDTLVDAWLDRLADLPDLISLDLANTGVAGPGLKVVGTLKNLERLNLTLTPVTDAHLE 197
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282
L+ L +L L+L + + +G K+ L+ N F + D L + +T LE L
Sbjct: 198 HLAGLTNLRVLSLASAKCTGEGFRFLGKLKQLENANFHFTPVNDAGLAGISTVTGLERLE 257
Query: 283 LDSCGIGDEG------LVN------------------LTGLCNLKCLELSDTQVGSSGLR 318
+ C D G LVN LT L L+ L+L D Q + G+R
Sbjct: 258 IVHCHFTDAGAPHLAKLVNLERLQIGSRDATGAAIEPLTALTKLRELDLQDNQATAEGVR 317
Query: 319 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 378
H S + +L + + I D +A LS+L+ L + +TD L L L L+
Sbjct: 318 HASRIPSLRVLRI-HGQIKDEGAASIAQLSNLEILVANNAGLTDDALDHFARLPRLQRLE 376
Query: 379 LFGARITDSGAAYLRS 394
+ G +ITD A L+
Sbjct: 377 IKGNKITDPALARLQQ 392
>gi|397646482|gb|EJK77289.1| hypothetical protein THAOC_00890 [Thalassiosira oceanica]
Length = 702
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 102/354 (28%), Positives = 159/354 (44%), Gaps = 75/354 (21%)
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
+ IT +GM AF+ L + L C R+ +VN+ L SLN+ C C+TD ++
Sbjct: 293 HGITGKGMLAFSRSPRLHTISLANCRRLTDEAVVNISHCTSLTSLNVGGCRCLTDRSLEA 352
Query: 176 LSGLTN------------------------------------------------LKSLQI 187
+SGL + LK+L++
Sbjct: 353 MSGLLDLRRLDLSQCDLITDDGLIFLGELDLLEELSLGNKSCGMAIQQRNRSIALKTLRL 412
Query: 188 SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL----------DSLSA------LGSLF 231
+ +T+ G+ YL+ LQ L L++ GC +++ L +SL A L L
Sbjct: 413 ARCAITNDGLDYLEQLQSLEDLDINGCSLSSTALGESLEKLTNLNSLDASHCPGILPGLE 472
Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
LNL Q+SD+ K +K+ L+ L+L + ++ L HL L L+SLNLDS IGDE
Sbjct: 473 VLNLADTQISDNAMSKVAKLAGLRSLSLFYCNVSSRGLRHLASLEKLDSLNLDSRDIGDE 532
Query: 292 GLVN---------LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT-GISDGSL 341
G N + + L L+L+ VG G H++ + LES+NLS I++
Sbjct: 533 GRPNRVTDLGCSYIAKIKTLTTLQLAGGGVGDLGCAHIATIDALESLNLSQNESITNRGA 592
Query: 342 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRSK 395
LA LS+L++LNL ++T L L+ L L L+G + DS L+ +
Sbjct: 593 ASLAALSNLRALNLSNTRVTSNALKFFHGLSKLQSLALYGCIMEDSPIESLQDE 646
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 91/324 (28%), Positives = 148/324 (45%), Gaps = 48/324 (14%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM---- 124
+TD ++++ C++L SL+ C ++D LE + GL +L L + + IT G+
Sbjct: 320 LTDEAVVNISHCTSLTSLNVGGCRCLTDRSLEAMSGLLDLRRLDLSQCDLITDDGLIFLG 379
Query: 125 -----------KAFAGL--------INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC 165
G+ I L L L RC + GL L+ L LE L+I C
Sbjct: 380 ELDLLEELSLGNKSCGMAIQQRNRSIALKTLRLARCAITNDGLDYLEQLQSLEDLDINGC 439
Query: 166 NCITDSDMKPLSGLTNLKSLQISC---------------SKVTDSGIAYLKGLQKLTLLN 210
+ + + + L LTNL SL S ++++D+ ++ + L L L+
Sbjct: 440 SLSSTALGESLEKLTNLNSLDASHCPGILPGLEVLNLADTQISDNAMSKVAKLAGLRSLS 499
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG---------CEKFSKIGSLKVLNLGF 261
L C V++ L L++L L LNL+ + D+G C +KI +L L L
Sbjct: 500 LFYCNVSSRGLRHLASLEKLDSLNLDSRDIGDEGRPNRVTDLGCSYIAKIKTLTTLQLAG 559
Query: 262 NEITDECLVHLKGLTNLESLNL-DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 320
+ D H+ + LESLNL + I + G +L L NL+ L LS+T+V S+ L+
Sbjct: 560 GGVGDLGCAHIATIDALESLNLSQNESITNRGAASLAALSNLRALNLSNTRVTSNALKFF 619
Query: 321 SGLTNLESINLSFTGISDGSLRKL 344
GL+ L+S+ L + D + L
Sbjct: 620 HGLSKLQSLALYGCIMEDSPIESL 643
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 84/171 (49%), Gaps = 9/171 (5%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR------- 114
++L+ + ++D+ + + + L+SL +C +S GL HL L L SL+
Sbjct: 474 LNLADTQISDNAMSKVAKLAGLRSLSLFYC-NVSSRGLRHLASLEKLDSLNLDSRDIGDE 532
Query: 115 -RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
R N +T G A + L L L G ++ + LESLN+ IT+
Sbjct: 533 GRPNRVTDLGCSYIAKIKTLTTLQLAGGGVGDLGCAHIATIDALESLNLSQNESITNRGA 592
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
L+ L+NL++L +S ++VT + + + GL KL L L GC + + ++SL
Sbjct: 593 ASLAALSNLRALNLSNTRVTSNALKFFHGLSKLQSLALYGCIMEDSPIESL 643
Score = 38.5 bits (88), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGS 57
LP+D+ +I L L ++ A +C L LCL GVND+++ + S GS
Sbjct: 47 LPQDVVDRIVKSLTAHAALNCTTMRALSNCELGTLCLADARGVNDEFLMALCSSGS 102
>gi|59802548|gb|AAX07514.1| putative regulatory subunit [Gemmata sp. Wa1-1]
Length = 250
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 77/207 (37%), Positives = 111/207 (53%), Gaps = 2/207 (0%)
Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
S+ + KVTD+ + L L+ LT LNL VT A L LS L L +L L + +++D
Sbjct: 23 SVDFALWKVTDADLKELAPLKNLTQLNLCLTKVTDAGLKELSPLTKLTHLCLMQTKVTDA 82
Query: 244 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 303
G ++ + + +L L LG ++TD L L LTNL L L S + D GL L L +L
Sbjct: 83 GLKELAPLTNLTTLELGSTQVTDAGLKELAPLTNLTVLTLGSTQVTDAGLKELAPLKSLT 142
Query: 304 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 363
LEL +TQ+ +G++ L+ T L ++LS T ++D ++ LA + L LNL +TDT
Sbjct: 143 LLELGETQITEAGIKELAPFTKLTRLDLSITRVTDAGVKGLAPFTKLTQLNLGGTLVTDT 202
Query: 364 GLAALTSLTGLTHLDLFGARITDSGAA 390
L L L L L L +R GAA
Sbjct: 203 CLKDLAPLKNLAFLSL--SRNERDGAA 227
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 74/231 (32%), Positives = 111/231 (48%), Gaps = 29/231 (12%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI-QISDGGLEHLRGLSNLTSLS 112
+ G ++SVD + VTD+ L L NL L N C+ +++D GL+ L L+ LT L
Sbjct: 16 APGKPVISVDFALWKVTDADLKELAPLKNLTQL--NLCLTKVTDAGLKELSPLTKLTHLC 73
Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 172
+ +T G+K A L NL L+L +TD+
Sbjct: 74 LMQTK-VTDAGLKELAPLTNLTTLEL-------------------------GSTQVTDAG 107
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
+K L+ LTNL L + ++VTD+G+ L L+ LTLL L +T A + L+ L
Sbjct: 108 LKELAPLTNLTVLTLGSTQVTDAGLKELAPLKSLTLLELGETQITEAGIKELAPFTKLTR 167
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
L+L+ +++D G + + L LNLG +TD CL L L NL L+L
Sbjct: 168 LDLSITRVTDAGVKGLAPFTKLTQLNLGGTLVTDTCLKDLAPLKNLAFLSL 218
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 84/174 (48%), Gaps = 9/174 (5%)
Query: 19 CLTEVSLEAFRDCA----LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGL 74
CLT+V+ ++ + L LCL Q V D + +A ++L +++L + VTD+GL
Sbjct: 51 CLTKVTDAGLKELSPLTKLTHLCLMQT-KVTDAGLKELAPL-TNLTTLELGSTQVTDAGL 108
Query: 75 IHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134
L +NL L Q++D GL+ L L +LT L IT G+K A L
Sbjct: 109 KELAPLTNLTVLTLG-STQVTDAGLKELAPLKSLTLLELGETQ-ITEAGIKELAPFTKLT 166
Query: 135 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
+LDL G+ L KL LN+ +TD+ +K L+ L NL L +S
Sbjct: 167 RLDLSITRVTDAGVKGLAPFTKLTQLNL-GGTLVTDTCLKDLAPLKNLAFLSLS 219
>gi|290973212|ref|XP_002669343.1| predicted protein [Naegleria gruberi]
gi|284082889|gb|EFC36599.1| predicted protein [Naegleria gruberi]
Length = 440
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/239 (28%), Positives = 130/239 (54%), Gaps = 1/239 (0%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
+ +L SLNI + N + D K LS + L SL I ++V G YL +++LT LN+
Sbjct: 142 MKQLTSLNIGY-NRVGDEGAKYLSEMKQLTSLNIGYNRVGIEGAKYLSEMEQLTSLNIGY 200
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
+ + +S + L LN+++ ++S++G + S++ L++LN+ NEI DE + +L
Sbjct: 201 SRIGIEGVKYISEMKQLTSLNISKNEVSNEGAKYLSEMKQLRLLNIYHNEIGDEGVKYLS 260
Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333
+ L SL++ IG EG+ ++ + L L++S+ ++ G ++LS + L S+N+ +
Sbjct: 261 EMKQLTSLHIGYNRIGLEGVKLISEMEQLTSLDISENEISDEGAKYLSEMEQLTSLNIDY 320
Query: 334 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
+ I ++ ++ + L SL + +I G ++ + L LD+ I+D GA YL
Sbjct: 321 SRIGLEGVKYISEMKQLTSLTIAYNRIGIKGAKLISEMKQLRLLDISNNEISDEGAKYL 379
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 85/334 (25%), Positives = 160/334 (47%), Gaps = 27/334 (8%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L S+++ + + D + ++ + L SL+ + ++ D G ++L + LTSL+ N
Sbjct: 121 LTSLNIYDNGIGDEEIKYISEMKQLTSLNIGYN-RVGDEGAKYLSEMKQLTSLNIGYNR- 178
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
+ +G K + ++E+ T SLNI + I +K +S
Sbjct: 179 VGIEGAKYLS--------EMEQLT----------------SLNIGYSR-IGIEGVKYISE 213
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
+ L SL IS ++V++ G YL +++L LLN+ + + LS + L L++
Sbjct: 214 MKQLTSLNISKNEVSNEGAKYLSEMKQLRLLNIYHNEIGDEGVKYLSEMKQLTSLHIGYN 273
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
++ +G + S++ L L++ NEI+DE +L + L SLN+D IG EG+ ++
Sbjct: 274 RIGLEGVKLISEMEQLTSLDISENEISDEGAKYLSEMEQLTSLNIDYSRIGLEGVKYISE 333
Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
+ L L ++ ++G G + +S + L +++S ISD + L+ + L SL +
Sbjct: 334 MKQLTSLTIAYNRIGIKGAKLISEMKQLRLLDISNNEISDEGAKYLSEMKQLISLYISEI 393
Query: 359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
I G+ ++ + L LD+ RI GA L
Sbjct: 394 GIGIKGVKYISEMKQLRLLDITRNRIGKEGAKLL 427
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 73/289 (25%), Positives = 140/289 (48%), Gaps = 2/289 (0%)
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 163
+ LTSL+ +N I + +K + + L L++ G L + +L SLNI
Sbjct: 117 AMKQLTSLNIY-DNGIGDEEIKYISEMKQLTSLNIGYNRVGDEGAKYLSEMKQLTSLNIG 175
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
+ N + K LS + L SL I S++ G+ Y+ +++LT LN+ V+
Sbjct: 176 Y-NRVGIEGAKYLSEMEQLTSLNIGYSRIGIEGVKYISEMKQLTSLNISKNEVSNEGAKY 234
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
LS + L LN+ ++ D+G + S++ L L++G+N I E + + + L SL++
Sbjct: 235 LSEMKQLRLLNIYHNEIGDEGVKYLSEMKQLTSLHIGYNRIGLEGVKLISEMEQLTSLDI 294
Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
I DEG L+ + L L + +++G G++++S + L S+ +++ I +
Sbjct: 295 SENEISDEGAKYLSEMEQLTSLNIDYSRIGLEGVKYISEMKQLTSLTIAYNRIGIKGAKL 354
Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
++ + L+ L++ +I+D G L+ + L L + I G Y+
Sbjct: 355 ISEMKQLRLLDISNNEISDEGAKYLSEMKQLISLYISEIGIGIKGVKYI 403
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/273 (25%), Positives = 142/273 (52%), Gaps = 3/273 (1%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L S+++ + V G +L + L SL+ + +I G++++ + LTSL+
Sbjct: 164 SEMKQLTSLNIGYNRVGIEGAKYLSEMEQLTSLNIGYS-RIGIEGVKYISEMKQLTSLNI 222
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
+N ++ +G K + + L L++ G+ L + +L SL+I + N I +
Sbjct: 223 SKNE-VSNEGAKYLSEMKQLRLLNIYHNEIGDEGVKYLSEMKQLTSLHIGY-NRIGLEGV 280
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
K +S + L SL IS ++++D G YL +++LT LN++ + + +S + L L
Sbjct: 281 KLISEMEQLTSLDISENEISDEGAKYLSEMEQLTSLNIDYSRIGLEGVKYISEMKQLTSL 340
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+ ++ G + S++ L++L++ NEI+DE +L + L SL + GIG +G+
Sbjct: 341 TIAYNRIGIKGAKLISEMKQLRLLDISNNEISDEGAKYLSEMKQLISLYISEIGIGIKGV 400
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 326
++ + L+ L+++ ++G G + LS + L
Sbjct: 401 KYISEMKQLRLLDITRNRIGKEGAKLLSEMKQL 433
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 100/193 (51%)
Query: 200 LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 259
+ +++LT LN+ + + +S + L LN+ ++ D+G + S++ L LN+
Sbjct: 115 ISAMKQLTSLNIYDNGIGDEEIKYISEMKQLTSLNIGYNRVGDEGAKYLSEMKQLTSLNI 174
Query: 260 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 319
G+N + E +L + L SLN+ IG EG+ ++ + L L +S +V + G ++
Sbjct: 175 GYNRVGIEGAKYLSEMEQLTSLNIGYSRIGIEGVKYISEMKQLTSLNISKNEVSNEGAKY 234
Query: 320 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
LS + L +N+ I D ++ L+ + L SL++ +I G+ ++ + LT LD+
Sbjct: 235 LSEMKQLRLLNIYHNEIGDEGVKYLSEMKQLTSLHIGYNRIGLEGVKLISEMEQLTSLDI 294
Query: 380 FGARITDSGAAYL 392
I+D GA YL
Sbjct: 295 SENEISDEGAKYL 307
>gi|348503268|ref|XP_003439187.1| PREDICTED: hypothetical protein LOC100705990 [Oreochromis
niloticus]
Length = 894
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 119/401 (29%), Positives = 195/401 (48%), Gaps = 23/401 (5%)
Query: 5 DISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDL 64
++++ + N + + R L +LE F C +Q L YP ++ + + + ++L + L
Sbjct: 474 ELAELLLNHMSHERLLHPRTLELFFGCPIQKFVLNSYPYSTNELLRQLRA-FTALKHLSL 532
Query: 65 SGSD-VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
S +TDSGL L LQ L+ C +++D L+H+ GL NL LS + +T G
Sbjct: 533 VNSPLITDSGLCILSTLVKLQYLNLASCSKLTDSCLQHITGLKNLCFLSLDQTK-VTDAG 591
Query: 124 MKAFAGLIN--LVKLDLERCTRIHGGLVNLK-GLMKLESLNIKWCNCITDSDMKPLSGLT 180
M + + L +L L + L L + +L L+IK D+ L+ ++
Sbjct: 592 MVLYLQSVPSCLSQLSLNQTAVTETTLAVLPTSVPQLRLLSIKQTKV---KDLTALAAMS 648
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
+L++L + + VT++ + +L LT L L G PV D AL + L L R L
Sbjct: 649 SLQTLNLDGTGVTEASLEHLATHPALTSLTLVGIPVA----DGSHALQIISGLKLTRITL 704
Query: 241 ------SDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+D G S++ L L+L + +ITD+ + HL LT L+ L+L + + D GL
Sbjct: 705 PGRHSVTDSGLSFLSRLTLLSELDLTDYTQITDQGVSHLSTLTRLKKLSLSNTQVTDAGL 764
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHL-SGLTNLESINLSFTGISDGSLRK-LAGLSSLK 351
+L + L+ L L T V S G+ L + L +L+ + L+ T + D +RK L S L
Sbjct: 765 PSLRCMQELQELCLDRTAVTSRGVADLITCLPHLQVLGLASTQVGDNVVRKGLIRCSQLV 824
Query: 352 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
LNL +ITD GL L + L ++L G ++ G A L
Sbjct: 825 KLNLSRTRITDHGLKYLKQMR-LAQVNLDGTGVSLMGIASL 864
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 92/300 (30%), Positives = 145/300 (48%), Gaps = 36/300 (12%)
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
++AF L +L ++ T GL L L+KL+ LN+ C+ +TDS ++ ++GL NL
Sbjct: 521 LRAFTALKHLSLVNSPLIT--DSGLCILSTLVKLQYLNLASCSKLTDSCLQHITGLKNLC 578
Query: 184 SLQISCSKVTDSGIA-YLKGLQK-LTLLNLEGCPVTAACLDSL-SALGSLFYLNLNRCQL 240
L + +KVTD+G+ YL+ + L+ L+L VT L L +++ L L++ + ++
Sbjct: 579 FLSLDQTKVTDAGMVLYLQSVPSCLSQLSLNQTAVTETTLAVLPTSVPQLRLLSIKQTKV 638
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD---------- 290
D + + SL+ LNL +T+ L HL L SL L + D
Sbjct: 639 KD--LTALAAMSSLQTLNLDGTGVTEASLEHLATHPALTSLTLVGIPVADGSHALQIISG 696
Query: 291 ----------------EGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSF 333
GL L+ L L L+L+D TQ+ G+ HLS LT L+ ++LS
Sbjct: 697 LKLTRITLPGRHSVTDSGLSFLSRLTLLSELDLTDYTQITDQGVSHLSTLTRLKKLSLSN 756
Query: 334 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
T ++D L L + L+ L LD +T G+A L +T L HL + G T G +R
Sbjct: 757 TQVTDAGLPSLRCMQELQELCLDRTAVTSRGVADL--ITCLPHLQVLGLASTQVGDNVVR 814
>gi|290980851|ref|XP_002673145.1| predicted protein [Naegleria gruberi]
gi|284086726|gb|EFC40401.1| predicted protein [Naegleria gruberi]
Length = 468
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 92/332 (27%), Positives = 158/332 (47%), Gaps = 12/332 (3%)
Query: 53 ASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLE---HLRGLSNLT 109
S+ L ++ ++ +++ G L++ NL L+ I +D G+E ++ L LT
Sbjct: 132 VSEMKQLTNLYVNANNIGTEGAKFLRELKNLTYLN----ISENDIGVEGAKYISELKQLT 187
Query: 110 SLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCIT 169
L NN I +G K + L L LD+E G + L +L+ LNI + +
Sbjct: 188 DLDISYNN-IGTEGAKYISDLKQLTTLDIESNNIGTEGAKYISELNQLQVLNISYS-SLG 245
Query: 170 DSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 229
D + +S + L L IS S + G Y+ +++LT L +E + +S +
Sbjct: 246 DKGAQYISEMKQLTHLYISDSLIRSEGAKYISEMKQLTNLFIENNDIDDEGAKHISTMKE 305
Query: 230 L--FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
L Y+ NR +SD+G + S++ +L VL +G N I +E HL L NL S+ +
Sbjct: 306 LTKLYMQGNRL-ISDEGAKYLSELKNLTVLFIGDNRIGNEGAKHLSELKNLTSIYVSYTE 364
Query: 288 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 347
IGDEG L+ L L L++ +G+ G +H+S L L + + + I + + ++ L
Sbjct: 365 IGDEGAKYLSELNKLTILQIGYNGIGAEGAKHISNLKELTMLKIQYNNIGNEGAKYISEL 424
Query: 348 SSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
L L++ I G L+ + LTHL++
Sbjct: 425 KQLTDLDISYNNIGTEGADYLSQMKQLTHLEI 456
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 93/322 (28%), Positives = 149/322 (46%), Gaps = 4/322 (1%)
Query: 72 SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLI 131
G H+ + L +L N I G + LR L NLT L+ N+ I +G K + L
Sbjct: 127 EGAKHVSEMKQLTNLYVN-ANNIGTEGAKFLRELKNLTYLNISEND-IGVEGAKYISELK 184
Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 191
L LD+ G + L +L +L+I+ N T+ K +S L L+ L IS S
Sbjct: 185 QLTDLDISYNNIGTEGAKYISDLKQLTTLDIESNNIGTEG-AKYISELNQLQVLNISYSS 243
Query: 192 VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI 251
+ D G Y+ +++LT L + + + +S + L L + + D+G + S +
Sbjct: 244 LGDKGAQYISEMKQLTHLYISDSLIRSEGAKYISEMKQLTNLFIENNDIDDEGAKHISTM 303
Query: 252 GSLKVLNLGFNE-ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 310
L L + N I+DE +L L NL L + IG+EG +L+ L NL + +S T
Sbjct: 304 KELTKLYMQGNRLISDEGAKYLSELKNLTVLFIGDNRIGNEGAKHLSELKNLTSIYVSYT 363
Query: 311 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 370
++G G ++LS L L + + + GI + ++ L L L + I + G ++
Sbjct: 364 EIGDEGAKYLSELNKLTILQIGYNGIGAEGAKHISNLKELTMLKIQYNNIGNEGAKYISE 423
Query: 371 LTGLTHLDLFGARITDSGAAYL 392
L LT LD+ I GA YL
Sbjct: 424 LKQLTDLDISYNNIGTEGADYL 445
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/289 (23%), Positives = 135/289 (46%), Gaps = 20/289 (6%)
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW 164
L+N+++L F R A K FA + ++ L+++ N++G + ++
Sbjct: 80 LANISTLEFER--RTDAFDFKVFALMKHVTSLEIDD---------NIEGTTNENGIGVEG 128
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
+ S+MK L+ +L ++ + + G +L+ L+ LT LN+ + +
Sbjct: 129 AKHV--SEMKQLT------NLYVNANNIGTEGAKFLRELKNLTYLNISENDIGVEGAKYI 180
Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284
S L L L+++ + +G + S + L L++ N I E ++ L L+ LN+
Sbjct: 181 SELKQLTDLDISYNNIGTEGAKYISDLKQLTTLDIESNNIGTEGAKYISELNQLQVLNIS 240
Query: 285 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 344
+GD+G ++ + L L +SD+ + S G +++S + L ++ + I D + +
Sbjct: 241 YSSLGDKGAQYISEMKQLTHLYISDSLIRSEGAKYISEMKQLTNLFIENNDIDDEGAKHI 300
Query: 345 AGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
+ + L L + R I+D G L+ L LT L + RI + GA +L
Sbjct: 301 STMKELTKLYMQGNRLISDEGAKYLSELKNLTVLFIGDNRIGNEGAKHL 349
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 119/252 (47%), Gaps = 17/252 (6%)
Query: 52 IASQGSSLLS-------VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRG 104
I ++G+ +S +++S S + D G ++ + L L + + I G +++
Sbjct: 220 IGTEGAKYISELNQLQVLNISYSSLGDKGAQYISEMKQLTHLYISDSL-IRSEGAKYISE 278
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVNLKGLMKLESLNI 162
+ LT+L F NN I +G K + + L KL ++ R G K L +L++L +
Sbjct: 279 MKQLTNL-FIENNDIDDEGAKHISTMKELTKLYMQGNRLISDEGA----KYLSELKNLTV 333
Query: 163 KWC--NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 220
+ N I + K LS L NL S+ +S +++ D G YL L KLT+L + + A
Sbjct: 334 LFIGDNRIGNEGAKHLSELKNLTSIYVSYTEIGDEGAKYLSELNKLTILQIGYNGIGAEG 393
Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 280
+S L L L + + ++G + S++ L L++ +N I E +L + L
Sbjct: 394 AKHISNLKELTMLKIQYNNIGNEGAKYISELKQLTDLDISYNNIGTEGADYLSQMKQLTH 453
Query: 281 LNLDSCGIGDEG 292
L +++ +EG
Sbjct: 454 LEIETNSDAEEG 465
>gi|188586163|ref|YP_001917708.1| hypothetical protein Nther_1542 [Natranaerobius thermophilus
JW/NM-WN-LF]
gi|179350850|gb|ACB85120.1| Leucine-rich repeat, ribonuclease inhibitor subtype [Natranaerobius
thermophilus JW/NM-WN-LF]
Length = 344
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 86/288 (29%), Positives = 152/288 (52%), Gaps = 15/288 (5%)
Query: 93 QISDGGLEHLRGLS------NLTSLSFRRN-NAITAQGMK-----AFAGLINLVKLDLER 140
QI++ +E L L+ N+ + + N ++ QG K A + NL +L+L
Sbjct: 51 QITEENIEDLTTLTVSGEDINIKGIEYAINLQELSLQGTKIEDVNTLAEVDNLEELNLNY 110
Query: 141 CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL 200
G+ L L+ +++ + +TD K L+ +L+ L +S ++VTD G+ +L
Sbjct: 111 TEITDEGIEQLAEADNLKQISLTHTD-VTDEGTKLLAESESLERLILSGTEVTDDGLEHL 169
Query: 201 KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG 260
L L+L G VT + L+ +L L+L +++D+G E+ K+ +L+VL LG
Sbjct: 170 IEADNLKKLDLHGTDVTDDGAEHLAETDNLEKLSLVDTEVTDEGIEQLVKVDNLEVLILG 229
Query: 261 FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 320
+ E+TD + +L NLE L+LD I +EG+ L NL+ L+L T+V + + L
Sbjct: 230 WTEVTDNGVEYLAEADNLEMLHLDGTEITNEGVKYLAEADNLEELDLKQTKV--TDVNAL 287
Query: 321 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 368
+ +LE ++L T ++D +++LA SLK +NLD ++T+ G+ L
Sbjct: 288 AETDSLEELDLWDTDVTDEGVKELAEADSLKVVNLDETEVTNEGVEHL 335
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 81/275 (29%), Positives = 141/275 (51%), Gaps = 10/275 (3%)
Query: 123 GMKAFAGLINLVKLDLERCTR--IHGGLVNLKGL---MKLESLNIKWCNCITDSDMKPLS 177
+K G+ + + ++E T + G +N+KG+ + L+ L+++ D+ L+
Sbjct: 42 AIKEELGVEQITEENIEDLTTLTVSGEDINIKGIEYAINLQELSLQGTKI---EDVNTLA 98
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
+ NL+ L ++ +++TD GI L L ++L VT L+ SL L L+
Sbjct: 99 EVDNLEELNLNYTEITDEGIEQLAEADNLKQISLTHTDVTDEGTKLLAESESLERLILSG 158
Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
+++DDG E + +LK L+L ++TD+ HL NLE L+L + DEG+ L
Sbjct: 159 TEVTDDGLEHLIEADNLKKLDLHGTDVTDDGAEHLAETDNLEKLSLVDTEVTDEGIEQLV 218
Query: 298 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 357
+ NL+ L L T+V +G+ +L+ NLE ++L T I++ ++ LA +L+ L+L
Sbjct: 219 KVDNLEVLILGWTEVTDNGVEYLAEADNLEMLHLDGTEITNEGVKYLAEADNLEELDLKQ 278
Query: 358 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
++TD AL L LDL+ +TD G L
Sbjct: 279 TKVTDVN--ALAETDSLEELDLWDTDVTDEGVKEL 311
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 72/241 (29%), Positives = 128/241 (53%), Gaps = 7/241 (2%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
L++L L Y + D+ ++ +A + +L + L+ +DVTD G L + +L+ L +
Sbjct: 103 LEELNLN-YTEITDEGIEQLA-EADNLKQISLTHTDVTDEGTKLLAESESLERLILSGT- 159
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
+++D GLEHL NL L + +T G + A NL KL L G+ L
Sbjct: 160 EVTDDGLEHLIEADNLKKLDLHGTD-VTDDGAEHLAETDNLEKLSLVDTEVTDEGIEQLV 218
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
+ LE L + W +TD+ ++ L+ NL+ L + +++T+ G+ YL L L+L+
Sbjct: 219 KVDNLEVLILGWTE-VTDNGVEYLAEADNLEMLHLDGTEITNEGVKYLAEADNLEELDLK 277
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
VT +++L+ SL L+L ++D+G ++ ++ SLKV+NL E+T+E + HL
Sbjct: 278 QTKVTD--VNALAETDSLEELDLWDTDVTDEGVKELAEADSLKVVNLDETEVTNEGVEHL 335
Query: 273 K 273
+
Sbjct: 336 E 336
>gi|330842680|ref|XP_003293301.1| hypothetical protein DICPUDRAFT_158109 [Dictyostelium purpureum]
gi|325076385|gb|EGC30175.1| hypothetical protein DICPUDRAFT_158109 [Dictyostelium purpureum]
Length = 684
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 109/368 (29%), Positives = 174/368 (47%), Gaps = 38/368 (10%)
Query: 49 MDVIASQGSSLLSVDLSGSD-VTDSGLIH--LKDCSNLQSLDFNFCIQISDGGLEHLRGL 105
++ I S G + +DLS + ++ +H + +Q ++F+ CI ++D GLE +
Sbjct: 276 LNQILSSGVRVFKLDLSNQSLIVNNDFLHNCFRYLVEVQDVNFSNCINMTDYGLEVFKNE 335
Query: 106 S---NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
NL L R N +T G K L+NL +L L + G+ LK L+ L++L++
Sbjct: 336 KFHRNLRVLDLRHNRNLTDVGCKNLKNLVNLEELYLGSTSISDLGVAFLKQLVNLKTLDV 395
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIA------------YLKGLQKLT--- 207
C ITD+ M +S + L L +S +++TD I+ YL QKLT
Sbjct: 396 SRCK-ITDNAMVTISLFSKLTLLNLSETQITDVAISNIHQILTNIQYLYLSNCQKLTNKS 454
Query: 208 -----------LLNLEGCPVTAACLDSLSALGSLFYLNL-NRCQLSDDGCEKFSKIGSLK 255
LL++ G ++ L L +L YL L NR L+D + + LK
Sbjct: 455 LFFLTYFSKMRLLSITGTQISLNGFVHLKRLPNLLYLELPNRYCLNDQTIVYLNSLTKLK 514
Query: 256 VLNL-GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 314
L+L + IT + L L LE L L + +GD + + + +L+ L L T + S
Sbjct: 515 KLDLTDYTYIT--SIEPLDNLKYLEELLLANTRVGDSSVPAIKKMKSLEVLSLDRTDITS 572
Query: 315 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 374
+G+ L L NL+S++L T I D S+ L+ + SL+ LN+ IT + L +T L
Sbjct: 573 AGVAGLVDL-NLKSLSLMKTKIDDDSINYLSEIKSLRQLNISHNNITHKNIEKLKDITNL 631
Query: 375 THLDLFGA 382
LDL G
Sbjct: 632 NSLDLRGT 639
>gi|225426352|ref|XP_002266070.1| PREDICTED: uncharacterized protein LOC100261612 [Vitis vinifera]
Length = 598
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 113/409 (27%), Positives = 196/409 (47%), Gaps = 41/409 (10%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
+P +++ + + L+ R L LE F+ +++ + L V+ +WM I L S
Sbjct: 40 MPSHLAEALLHRLIRRRILNPSLLEVFK-FSVEKIDLRGESSVDAEWMAYIGG-FCCLCS 97
Query: 62 VDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
++++ +T+S L + NL+ LD + CI+ SD GL HL + L L +T
Sbjct: 98 LNIADCQRITNSALWPIIGMPNLKELDLSRCIKFSDSGLRHLISIRTLQKLCISE-TGVT 156
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
A G+ + L NL LDL L +L+ L KL+ L++ W + I++ L
Sbjct: 157 ADGINLVSSLTNLSVLDLGGLPVTDLVLSSLQVLTKLQYLDL-WGSKISNKGAADLVVFP 215
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA--------ACLDSLSALGSLFY 232
L L I+ + VT L L + LN+ C + + A L+ ++ G+ F
Sbjct: 216 KLSFLNIAWTDVTT-----LPDLPSIACLNMSNCTIHSMFEGEGAKALLEKITVSGATF- 269
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
LN++ L F + L L++ + + C L + LE L+L +GD+
Sbjct: 270 LNVSEAFL-------FIETSFLSFLDVSRSSLNSFCF--LSCMKALEHLDLSFTMMGDDS 320
Query: 293 LVNLTGL-CNLKCLELSDTQVGSSGLRHLSG-LTNLESINLSFTGISDGSLRKLAGLSSL 350
+ + + NL+ L LS+T+V S+G+ L+G + NLE+I+LS T + D ++ ++ +SS+
Sbjct: 321 IQLIACIGANLRNLNLSNTRVSSAGVSILAGCVPNLETISLSHTPVDDVAISYISMMSSV 380
Query: 351 KSLNL-----------DARQITDTGLAALTSLTGLTHLDLFGARITDSG 388
K +NL D+ + + LAAL SL + LDL G ++ D
Sbjct: 381 KIINLSNTNVKGLIWSDSELVWELSLAALHSLNYVKRLDLEGTQVEDEA 429
>gi|149175664|ref|ZP_01854283.1| hypothetical protein PM8797T_31103 [Planctomyces maris DSM 8797]
gi|148845383|gb|EDL59727.1| hypothetical protein PM8797T_31103 [Planctomyces maris DSM 8797]
Length = 660
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 103/341 (30%), Positives = 151/341 (44%), Gaps = 50/341 (14%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF-RRNNAITAQGMKAFAGLINLVKLDLE 139
+ L+ LD + ++D L HLR L+ L L N IT +G++ L LDL
Sbjct: 334 TQLRELDLSGNSSLNDVALFHLRNLNQLEELKVASYYNRITEKGLQYLRQPRKLKTLDLI 393
Query: 140 RCTRIHGGLVNLKGLMKLESLNIK-WCNCITDSDM-KPLSGLTNLKSLQISCSKVTDSGI 197
C GL + + LE+LN+K +C D+ PL L +L+ L + C +
Sbjct: 394 GCMLKADGLAAIGDVSSLETLNLKVYCPERVDAHFFDPLRHLKSLRELTLECRQ------ 447
Query: 198 AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 257
LKG L SLS L L L+L + +L D+ + SLK L
Sbjct: 448 --LKG---------------GEGLSSLSQLPELEALHLLQTKLQDEDIRWIANCNSLKAL 490
Query: 258 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN---------------------- 295
L E+TD+ + L L LESLNLD C + GLV+
Sbjct: 491 TLNSYEVTDQGVSSLGSLKQLESLNLDRCRLDGSGLVSLQQLHRLTDVSLNHTGVTDAVI 550
Query: 296 --LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
L+ L LK L L + +V S+ L L L L +NL+ +SD L +S+L++L
Sbjct: 551 PFLSSLSQLKRLTLENGRVSSATLESLKDLKKLSELNLTNCPVSDEICELLTQMSALRTL 610
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRS 394
NL+ ++++ GL L TGL L L ++T G LR+
Sbjct: 611 NLNKTKVSNIGLEGLQKATGLETLSLRRTKVTRQGVQQLRT 651
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 85/280 (30%), Positives = 148/280 (52%), Gaps = 7/280 (2%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR--NNAITAQGMKA 126
+T+ GL +L+ L++LD C+ +DG L + +S+L +L+ + + A
Sbjct: 373 ITEKGLQYLRQPRKLKTLDLIGCMLKADG-LAAIGDVSSLETLNLKVYCPERVDAHFFDP 431
Query: 127 FAGLINLVKLDLERCTRIHGG--LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
L +L +L LE C ++ GG L +L L +LE+L++ + D D++ ++ +LK+
Sbjct: 432 LRHLKSLRELTLE-CRQLKGGEGLSSLSQLPELEALHLLQTK-LQDEDIRWIANCNSLKA 489
Query: 185 LQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 244
L ++ +VTD G++ L L++L LNL+ C + + L SL L L ++LN ++D
Sbjct: 490 LTLNSYEVTDQGVSSLGSLKQLESLNLDRCRLDGSGLVSLQQLHRLTDVSLNHTGVTDAV 549
Query: 245 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 304
S + LK L L ++ L LK L L LNL +C + DE LT + L+
Sbjct: 550 IPFLSSLSQLKRLTLENGRVSSATLESLKDLKKLSELNLTNCPVSDEICELLTQMSALRT 609
Query: 305 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 344
L L+ T+V + GL L T LE+++L T ++ +++L
Sbjct: 610 LNLNKTKVSNIGLEGLQKATGLETLSLRRTKVTRQGVQQL 649
>gi|218960535|ref|YP_001740310.1| putative Phosphoprotein phosphatase [Candidatus Cloacamonas
acidaminovorans]
gi|167729192|emb|CAO80103.1| putative Phosphoprotein phosphatase [Candidatus Cloacamonas
acidaminovorans str. Evry]
Length = 3445
Score = 105 bits (261), Expect = 4e-20, Method: Composition-based stats.
Identities = 114/304 (37%), Positives = 158/304 (51%), Gaps = 44/304 (14%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
+NLQSLD + QISD L L GL+NL L N + A L NL LDL
Sbjct: 2944 TNLQSLDLD-SNQISD--LSPLAGLTNLQELYLYYNQI---SDLSPLAELTNLQYLDL-- 2995
Query: 141 CTRIHGG-----LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS 195
GG L L GL L+ L + W N I D+ PL+GLTNL+ L + ++++D
Sbjct: 2996 -----GGNQISDLSPLAGLNNLQELYLYW-NQI--GDLSPLAGLTNLQELDLYSNQISD- 3046
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL--FYLNLNRCQLSDDGCEKFSKIGS 253
++ L L L L+L ++ L L+ L +L YL N+ + + +
Sbjct: 3047 -LSPLAELTNLWYLDLSYNQISD--LSPLAGLTNLQDLYLGWNQINY----LSPLAGLTN 3099
Query: 254 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 313
L+VLNL N+I+D L L LTNL+ L+L I D L LTGL NL L L+ Q+
Sbjct: 3100 LQVLNLYSNQISD--LSPLAELTNLQYLHLYYNQISD--LSPLTGLTNLHYLYLAYNQI- 3154
Query: 314 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 373
S L L GLTNL+ ++L + ISD + LA L++L+ L LD+ QI+D L+ L G
Sbjct: 3155 -SDLSPLIGLTNLQYLHLYYNQISD--ISPLAELTNLQYLWLDSNQISD-----LSPLAG 3206
Query: 374 LTHL 377
LT+L
Sbjct: 3207 LTNL 3210
Score = 94.0 bits (232), Expect = 1e-16, Method: Composition-based stats.
Identities = 101/265 (38%), Positives = 140/265 (52%), Gaps = 23/265 (8%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
L +NLQ LD QISD L L GL+NL L N + AGL NL +L
Sbjct: 2353 LAGLTNLQYLDLG-GNQISD--LSPLAGLTNLQDLYLGWNQI---NYLSPLAGLTNLQEL 2406
Query: 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG 196
DL +I + L GL L+ L + + N I SD+ PLSGLTNL+ L + +++ S
Sbjct: 2407 DLNN-NQI-SNINPLAGLTNLQKLYLYY-NQI--SDLSPLSGLTNLQYLLLEYNQI--SN 2459
Query: 197 IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 256
I+ L GL L +L+L ++ L L+ L +L+YL+L+ Q+SD + +L+
Sbjct: 2460 ISPLAGLTNLQVLDLYSNQISD--LSPLAELTNLWYLDLSYNQISD--LSPLVGLVNLQG 2515
Query: 257 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 316
L L N+I D L L GLTNL+ L+L I D L LTGL NL L L+ Q+ S
Sbjct: 2516 LWLDNNQIND--LSPLIGLTNLQYLHLYYNQISD--LSPLTGLTNLHYLYLAYNQI--SD 2569
Query: 317 LRHLSGLTNLESINLSFTGISDGSL 341
L + GLTNL+ + L + IS S+
Sbjct: 2570 LSSVEGLTNLQELYLDYNPISYESM 2594
Score = 91.3 bits (225), Expect = 7e-16, Method: Composition-based stats.
Identities = 85/233 (36%), Positives = 125/233 (53%), Gaps = 41/233 (17%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
L L+SL++ N I SD+ PL+GLTNL+ L + ++++D
Sbjct: 2943 LTNLQSLDLD-SNQI--SDLSPLAGLTNLQELYLYYNQISD------------------- 2980
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
L L+ L +L YL+L Q+SD + + +L+ L L +N+I D L L
Sbjct: 2981 -------LSPLAELTNLQYLDLGGNQISD--LSPLAGLNNLQELYLYWNQIGD--LSPLA 3029
Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333
GLTNL+ L+L S I D L L L NL L+LS Q+ S L L+GLTNL+ + L +
Sbjct: 3030 GLTNLQELDLYSNQISD--LSPLAELTNLWYLDLSYNQI--SDLSPLAGLTNLQDLYLGW 3085
Query: 334 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
I+ L LAGL++L+ LNL + QI+D L+ L LT L +L L+ +I+D
Sbjct: 3086 NQIN--YLSPLAGLTNLQVLNLYSNQISD--LSPLAELTNLQYLHLYYNQISD 3134
Score = 90.5 bits (223), Expect = 1e-15, Method: Composition-based stats.
Identities = 83/230 (36%), Positives = 130/230 (56%), Gaps = 19/230 (8%)
Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 207
+++++G L +L + + SD+ PL+GL NL+ L + ++++D I+ L GL L
Sbjct: 1089 IISIEGAQYLTNLQVMYLYSNQISDLSPLAGLANLQELLLYANQISD--ISPLAGLNNLQ 1146
Query: 208 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 267
L L+ ++ L L+ L +L L L Q+SD + + +L+VL+L N+I+
Sbjct: 1147 YLLLQYNQISD--LSPLAGLTNLQNLILAYNQISD--ISPLAGLTNLQVLDLYSNQIS-- 1200
Query: 268 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 327
L L GLTNL+ L L S I D L L G+ NL+ + L + Q+ S L L+GLTNL+
Sbjct: 1201 YLSPLAGLTNLQELYLHSNQISD--LSPLAGMTNLRVINLKNNQI--SDLSPLAGLTNLQ 1256
Query: 328 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 377
+ L + I+D + LAGL++L SLNL QI+D L+ L GLT+L
Sbjct: 1257 YLLLGWNKIND--ISPLAGLTNLWSLNLSYNQISD-----LSPLAGLTNL 1299
Score = 87.0 bits (214), Expect = 1e-14, Method: Composition-based stats.
Identities = 112/307 (36%), Positives = 156/307 (50%), Gaps = 51/307 (16%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
+NLQSLD + QISD L L GL+NL L N + AGL NL LDL
Sbjct: 2313 TNLQSLDLD-SNQISD--LSPLAGLTNLLELYLLDN---MINYLSPLAGLTNLQYLDL-- 2364
Query: 141 CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAY 199
GG N I SD+ PL+GLTNL+ L + +++ S +A
Sbjct: 2365 -----GG------------------NQI--SDLSPLAGLTNLQDLYLGWNQINYLSPLAG 2399
Query: 200 LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 259
L LQ+L L N + + ++ L+ L +L L L Q+SD S + +L+ L L
Sbjct: 2400 LTNLQELDLNNNQ-----ISNINPLAGLTNLQKLYLYYNQISD--LSPLSGLTNLQYLLL 2452
Query: 260 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 319
+N+I++ + L GLTNL+ L+L S I D L L L NL L+LS Q+ S L
Sbjct: 2453 EYNQISN--ISPLAGLTNLQVLDLYSNQISD--LSPLAELTNLWYLDLSYNQI--SDLSP 2506
Query: 320 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
L GL NL+ + L I+D L L GL++L+ L+L QI+D L+ LT LT L +L L
Sbjct: 2507 LVGLVNLQGLWLDNNQIND--LSPLIGLTNLQYLHLYYNQISD--LSPLTGLTNLHYLYL 2562
Query: 380 FGARITD 386
+I+D
Sbjct: 2563 AYNQISD 2569
Score = 71.6 bits (174), Expect = 6e-10, Method: Composition-based stats.
Identities = 84/258 (32%), Positives = 130/258 (50%), Gaps = 39/258 (15%)
Query: 57 SSLLSVDLSGSDVTD----SGLIHLKDC----------------SNLQSLDFNFCIQISD 96
++L +DL G+ ++D +GL +L+D +NLQ LD N QIS+
Sbjct: 2357 TNLQYLDLGGNQISDLSPLAGLTNLQDLYLGWNQINYLSPLAGLTNLQELDLNNN-QISN 2415
Query: 97 GGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMK 156
+ L GL+NL L N + +GL NL L LE +I + L GL
Sbjct: 2416 --INPLAGLTNLQKLYLYYNQI---SDLSPLSGLTNLQYLLLEY-NQI-SNISPLAGLTN 2468
Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
L+ L++ + N I SD+ PL+ LTNL L +S ++++D ++ L GL L L L+ +
Sbjct: 2469 LQVLDL-YSNQI--SDLSPLAELTNLWYLDLSYNQISD--LSPLVGLVNLQGLWLDNNQI 2523
Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 276
L L L +L YL+L Q+SD + + +L L L +N+I+D L ++GLT
Sbjct: 2524 ND--LSPLIGLTNLQYLHLYYNQISD--LSPLTGLTNLHYLYLAYNQISD--LSSVEGLT 2577
Query: 277 NLESLNLDSCGIGDEGLV 294
NL+ L LD I E ++
Sbjct: 2578 NLQELYLDYNPISYESML 2595
Score = 68.9 bits (167), Expect = 4e-09, Method: Composition-based stats.
Identities = 69/239 (28%), Positives = 120/239 (50%), Gaps = 38/239 (15%)
Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 207
+++++G +L+ + + S++ PL+GLTNLK L + ++++D I L GL ++
Sbjct: 1694 IISIEGAQYFTNLDSLYLSYNQISNLNPLAGLTNLKGLNLGSNQISD--INPLAGLTNIS 1751
Query: 208 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 267
L L G ++ +++ L L+ +L+ L L +N+I+D
Sbjct: 1752 WLFLFGNYIS-----NIAPLEGLY---------------------NLRNLQLHYNQISD- 1784
Query: 268 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 327
+ L L ++ + L S I D + L GL +L LEL Q+ + + LSGL NL+
Sbjct: 1785 -ITPLAALIDIGGIALGSNQIVD--ITPLAGLTHLIGLELYHNQI--NNIDALSGLINLQ 1839
Query: 328 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
+ L I D + LAGLS L+ L L+ QI D ++ L+ L L +L L+ +I+D
Sbjct: 1840 WLYLDGNQIID--ISPLAGLSILRELYLENNQIND--ISTLSELNNLQYLFLYNNQISD 1894
Score = 46.2 bits (108), Expect = 0.030, Method: Composition-based stats.
Identities = 69/255 (27%), Positives = 111/255 (43%), Gaps = 57/255 (22%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
LQDL LG + +N ++ +A ++L +DL+ + + S + L +NLQ L + +
Sbjct: 2381 LQDLYLG-WNQIN--YLSPLAGL-TNLQELDLNNNQI--SNINPLAGLTNLQKL-YLYYN 2433
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL-----------ERC 141
QISD L L GL+NL L N + AGL NL LDL
Sbjct: 2434 QISD--LSPLSGLTNLQYLLLEYNQI---SNISPLAGLTNLQVLDLYSNQISDLSPLAEL 2488
Query: 142 TRI------HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS 195
T + + + +L L+ L +L W + +D+ PL GLTNL+ L + ++++D
Sbjct: 2489 TNLWYLDLSYNQISDLSPLVGLVNLQGLWLDNNQINDLSPLIGLTNLQYLHLYYNQISD- 2547
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
L L+ L +L YL L Q+SD + +L+
Sbjct: 2548 -------------------------LSPLTGLTNLHYLYLAYNQISD--LSSVEGLTNLQ 2580
Query: 256 VLNLGFNEITDECLV 270
L L +N I+ E ++
Sbjct: 2581 ELYLDYNPISYESML 2595
Score = 45.1 bits (105), Expect = 0.060, Method: Composition-based stats.
Identities = 60/200 (30%), Positives = 95/200 (47%), Gaps = 35/200 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L +DL + ++D L L + +NL LD ++ QISD L L GL+NL L N
Sbjct: 3032 TNLQELDLYSNQISD--LSPLAELTNLWYLDLSYN-QISD--LSPLAGLTNLQDLYLGWN 3086
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD------ 170
+ AGL NL L+L + L L L L+ L++ + N I+D
Sbjct: 3087 QI---NYLSPLAGLTNLQVLNLY--SNQISDLSPLAELTNLQYLHLYY-NQISDLSPLTG 3140
Query: 171 --------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
SD+ PL GLTNL+ L + ++++D I+ L L L L L+ +
Sbjct: 3141 LTNLHYLYLAYNQISDLSPLIGLTNLQYLHLYYNQISD--ISPLAELTNLQYLWLDSNQI 3198
Query: 217 TAACLDSLSALGSLFYLNLN 236
+ L L+ L +L++L L+
Sbjct: 3199 SD--LSPLAGLTNLWWLWLD 3216
Score = 43.9 bits (102), Expect = 0.13, Method: Composition-based stats.
Identities = 57/181 (31%), Positives = 89/181 (49%), Gaps = 33/181 (18%)
Query: 57 SSLLSVDLSGSDVTD----SGLIHLKDC----------------SNLQSLDFNFCIQISD 96
++L +DLS + ++D +GL +L+D +NLQ L+ + QISD
Sbjct: 3054 TNLWYLDLSYNQISDLSPLAGLTNLQDLYLGWNQINYLSPLAGLTNLQVLNL-YSNQISD 3112
Query: 97 GGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMK 156
L L L+NL L N + GL NL L L +I L L GL
Sbjct: 3113 --LSPLAELTNLQYLHLYYNQI---SDLSPLTGLTNLHYLYLAY-NQI-SDLSPLIGLTN 3165
Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
L+ L++ + N I SD+ PL+ LTNL+ L + ++++D ++ L GL L L L+G P+
Sbjct: 3166 LQYLHLYY-NQI--SDISPLAELTNLQYLWLDSNQISD--LSPLAGLTNLWWLWLDGNPI 3220
Query: 217 T 217
+
Sbjct: 3221 S 3221
Score = 42.7 bits (99), Expect = 0.30, Method: Composition-based stats.
Identities = 48/150 (32%), Positives = 74/150 (49%), Gaps = 17/150 (11%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
LQDL LG + +N ++ +A ++L ++L + ++D L L + +NLQ L +
Sbjct: 3078 LQDLYLG-WNQIN--YLSPLAGL-TNLQVLNLYSNQISD--LSPLAELTNLQYLHLYYN- 3130
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
QISD L L GL+NL L N + GL NL L L + + ++
Sbjct: 3131 QISD--LSPLTGLTNLHYLYLAYNQI---SDLSPLIGLTNLQYLHL-----YYNQISDIS 3180
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNL 182
L +L +L W + SD+ PL+GLTNL
Sbjct: 3181 PLAELTNLQYLWLDSNQISDLSPLAGLTNL 3210
Score = 40.8 bits (94), Expect = 1.1, Method: Composition-based stats.
Identities = 48/126 (38%), Positives = 69/126 (54%), Gaps = 13/126 (10%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L +DL + + S L L +NLQ L + QISD L L G++NL ++ + N
Sbjct: 1187 TNLQVLDLYSNQI--SYLSPLAGLTNLQEL-YLHSNQISD--LSPLAGMTNLRVINLK-N 1240
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N I+ + AGL NL L L +I+ + L GL L SLN+ + N I SD+ PL
Sbjct: 1241 NQIS--DLSPLAGLTNLQYL-LLGWNKIND-ISPLAGLTNLWSLNLSY-NQI--SDLSPL 1293
Query: 177 SGLTNL 182
+GLTNL
Sbjct: 1294 AGLTNL 1299
Score = 38.9 bits (89), Expect = 4.0, Method: Composition-based stats.
Identities = 45/168 (26%), Positives = 84/168 (50%), Gaps = 21/168 (12%)
Query: 72 SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLI 131
S + L+ NL++L ++ QISD + L L ++ ++ N + + AGL
Sbjct: 1761 SNIAPLEGLYNLRNLQLHYN-QISD--ITPLAALIDIGGIALGSNQIVD---ITPLAGLT 1814
Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDS--DMKPLSGLTNLKSLQISC 189
+L+ L+L H + N+ L L +N++W + D+ PL+GL+ L+ L +
Sbjct: 1815 HLIGLEL-----YHNQINNIDALSGL--INLQWLYLDGNQIIDISPLAGLSILRELYLEN 1867
Query: 190 SKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+++ D S ++ L LQ L L N + + L L+ L +L++L L+
Sbjct: 1868 NQINDISTLSELNNLQYLFLYNNQ-----ISDLSPLAGLTNLWWLLLD 1910
>gi|290980071|ref|XP_002672756.1| predicted protein [Naegleria gruberi]
gi|284086335|gb|EFC40012.1| predicted protein [Naegleria gruberi]
Length = 385
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 92/336 (27%), Positives = 168/336 (50%), Gaps = 3/336 (0%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L S+D++ + + D G + +L SL+ + QI G + + G+ +L SLS
Sbjct: 15 SEMKHLTSLDIADNQIGDEGSKFISGMKHLTSLNIDRN-QIGVEGAKLISGMKSLISLSI 73
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
+N I +G K +G+ +L LD+ R G ++ + +L SLNI + N I
Sbjct: 74 G-DNQIGVEGAKLISGMKHLTSLDINRNQIGVEGAKSISRMKQLTSLNI-YYNQIGAEGA 131
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
K +SG+ L SL I +++ Y+ +++LT L++ + S+S + L L
Sbjct: 132 KSISGMKQLTSLDIGGNQIGVEESKYISEMKQLTSLDIYNNQIGVEGAKSISGMKQLTSL 191
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
N+ ++ +G + S++ L LN+G NEI E + + +L SLN+ IGDEG
Sbjct: 192 NIGFNRIGVEGSKLISEMKQLTSLNIGSNEIGVEGSKFIPEMKHLTSLNIYYNEIGDEGS 251
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
++ + L L++ ++G G +++S + L S+ +S I + ++ + L SL
Sbjct: 252 KYISEMKQLTSLDIYYNEIGVEGAKYISEMKQLTSLGISDNQIGVEGAKFISEMKLLTSL 311
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 389
++ QI D G ++ + LT L++ +I D GA
Sbjct: 312 DIADNQIGDEGSKFISEMKSLTSLNVNSNQIGDEGA 347
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 85/317 (26%), Positives = 156/317 (49%), Gaps = 5/317 (1%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
+ + +L SLD QI D G + + G+ +LTSL+ RN I +G K +G+ +L+ L
Sbjct: 14 ISEMKHLTSLDIADN-QIGDEGSKFISGMKHLTSLNIDRNQ-IGVEGAKLISGMKSLISL 71
Query: 137 DL-ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS 195
+ + + G + + G+ L SL+I N I K +S + L SL I +++
Sbjct: 72 SIGDNQIGVEGAKL-ISGMKHLTSLDINR-NQIGVEGAKSISRMKQLTSLNIYYNQIGAE 129
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G + G+++LT L++ G + +S + L L++ Q+ +G + S + L
Sbjct: 130 GAKSISGMKQLTSLDIGGNQIGVEESKYISEMKQLTSLDIYNNQIGVEGAKSISGMKQLT 189
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 315
LN+GFN I E + + L SLN+ S IG EG + + +L L + ++G
Sbjct: 190 SLNIGFNRIGVEGSKLISEMKQLTSLNIGSNEIGVEGSKFIPEMKHLTSLNIYYNEIGDE 249
Query: 316 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 375
G +++S + L S+++ + I + ++ + L SL + QI G ++ + LT
Sbjct: 250 GSKYISEMKQLTSLDIYYNEIGVEGAKYISEMKQLTSLGISDNQIGVEGAKFISEMKLLT 309
Query: 376 HLDLFGARITDSGAAYL 392
LD+ +I D G+ ++
Sbjct: 310 SLDIADNQIGDEGSKFI 326
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 87/325 (26%), Positives = 157/325 (48%), Gaps = 17/325 (5%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
SL+S+ + + + G + +L SLD N QI G + + + LTSL+ N
Sbjct: 67 SLISLSIGDNQIGVEGAKLISGMKHLTSLDINRN-QIGVEGAKSISRMKQLTSLNIYYNQ 125
Query: 118 AITAQGMKAFAGLINLVKLDL-------ERCTRIHGGLVNLKGLMKLESLNIKWCNCITD 170
I A+G K+ +G+ L LD+ E I + +L SL+I + N I
Sbjct: 126 -IGAEGAKSISGMKQLTSLDIGGNQIGVEESKYISE-------MKQLTSLDI-YNNQIGV 176
Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
K +SG+ L SL I +++ G + +++LT LN+ + + + L
Sbjct: 177 EGAKSISGMKQLTSLNIGFNRIGVEGSKLISEMKQLTSLNIGSNEIGVEGSKFIPEMKHL 236
Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
LN+ ++ D+G + S++ L L++ +NEI E ++ + L SL + IG
Sbjct: 237 TSLNIYYNEIGDEGSKYISEMKQLTSLDIYYNEIGVEGAKYISEMKQLTSLGISDNQIGV 296
Query: 291 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 350
EG ++ + L L+++D Q+G G + +S + +L S+N++ I D + ++G+ L
Sbjct: 297 EGAKFISEMKLLTSLDIADNQIGDEGSKFISEMKSLTSLNVNSNQIGDEGAKLISGMKQL 356
Query: 351 KSLNLDARQITDTGLAALTSLTGLT 375
SL + QI +T L ++ S+T T
Sbjct: 357 TSLKIYYNQIGETLLMSVISITAET 381
>gi|297742329|emb|CBI34478.3| unnamed protein product [Vitis vinifera]
Length = 588
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 113/409 (27%), Positives = 196/409 (47%), Gaps = 41/409 (10%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
+P +++ + + L+ R L LE F+ +++ + L V+ +WM I L S
Sbjct: 40 MPSHLAEALLHRLIRRRILNPSLLEVFK-FSVEKIDLRGESSVDAEWMAYIGG-FCCLCS 97
Query: 62 VDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
++++ +T+S L + NL+ LD + CI+ SD GL HL + L L +T
Sbjct: 98 LNIADCQRITNSALWPIIGMPNLKELDLSRCIKFSDSGLRHLISIRTLQKLCISE-TGVT 156
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
A G+ + L NL LDL L +L+ L KL+ L++ W + I++ L
Sbjct: 157 ADGINLVSSLTNLSVLDLGGLPVTDLVLSSLQVLTKLQYLDL-WGSKISNKGAADLVVFP 215
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA--------ACLDSLSALGSLFY 232
L L I+ + VT L L + LN+ C + + A L+ ++ G+ F
Sbjct: 216 KLSFLNIAWTDVTT-----LPDLPSIACLNMSNCTIHSMFEGEGAKALLEKITVSGATF- 269
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
LN++ L F + L L++ + + C L + LE L+L +GD+
Sbjct: 270 LNVSEAFL-------FIETSFLSFLDVSRSSLNSFCF--LSCMKALEHLDLSFTMMGDDS 320
Query: 293 LVNLTGL-CNLKCLELSDTQVGSSGLRHLSG-LTNLESINLSFTGISDGSLRKLAGLSSL 350
+ + + NL+ L LS+T+V S+G+ L+G + NLE+I+LS T + D ++ ++ +SS+
Sbjct: 321 IQLIACIGANLRNLNLSNTRVSSAGVSILAGCVPNLETISLSHTPVDDVAISYISMMSSV 380
Query: 351 KSLNL-----------DARQITDTGLAALTSLTGLTHLDLFGARITDSG 388
K +NL D+ + + LAAL SL + LDL G ++ D
Sbjct: 381 KIINLSNTNVKGLIWSDSELVWELSLAALHSLNYVKRLDLEGTQVEDEA 429
>gi|168701212|ref|ZP_02733489.1| hypothetical protein GobsU_16936 [Gemmata obscuriglobus UQM 2246]
Length = 410
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 86/279 (30%), Positives = 131/279 (46%), Gaps = 18/279 (6%)
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
+T Q + AG NLV L L + GL +L L L +L+ L G
Sbjct: 114 VTDQKLAELAGQPNLVVLRLNGASITDAGLKHLAALDGLSALS--------------LHG 159
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
+ + S +TD+G+ L+ ++ LT L+L G VT A +L+ + L L L
Sbjct: 160 TSRGATSAGSYRGITDAGLNELRAIKGLTDLSLGGIEVTDAGARTLATMPQLRVLGLEGT 219
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
+++D E + + L ++L F ++TD L HL L + L S + D G+ L
Sbjct: 220 KITDAALENLAPLTELTEIDLTFTKVTDAGLKHLARFKKLTRVRLSSTAVTDAGVRELAA 279
Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTN-LESINLSFTGISDGSLRKLAGLSSLKSLNLDA 357
L L L+LS T+ G G+ L+ N L S++L T + D + LA L LNL
Sbjct: 280 LPELTDLDLSYTKAGDGGVTALAAAPNRLTSVSLEKTRVGDEGAKALAAAPGLTRLNLGY 339
Query: 358 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRSKF 396
++ D G++AL + LT L L R+TD G +RS F
Sbjct: 340 TRVGDDGVSALAAAPNLTGLTLVATRVTDDG---VRSLF 375
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 89/312 (28%), Positives = 141/312 (45%), Gaps = 38/312 (12%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQ---------- 93
V D+ + +A Q +L+ + L+G+ +TD+GL HL L +L + +
Sbjct: 114 VTDQKLAELAGQ-PNLVVLRLNGASITDAGLKHLAALDGLSALSLHGTSRGATSAGSYRG 172
Query: 94 ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
I+D GL LR + LT LS +T G + A + L L LE
Sbjct: 173 ITDAGLNELRAIKGLTDLSL-GGIEVTDAGARTLATMPQLRVLGLE-------------- 217
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
ITD+ ++ L+ LT L + ++ +KVTD+G+ +L +KLT + L
Sbjct: 218 -----------GTKITDAALENLAPLTELTEIDLTFTKVTDAGLKHLARFKKLTRVRLSS 266
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS-LKVLNLGFNEITDECLVHL 272
VT A + L+AL L L+L+ + D G + + L ++L + DE L
Sbjct: 267 TAVTDAGVRELAALPELTDLDLSYTKAGDGGVTALAAAPNRLTSVSLEKTRVGDEGAKAL 326
Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 332
L LNL +GD+G+ L NL L L T+V G+R L L + L
Sbjct: 327 AAAPGLTRLNLGYTRVGDDGVSALAAAPNLTGLTLVATRVTDDGVRSLFACRKLAYVELR 386
Query: 333 FTGISDGSLRKL 344
T ++DG++R+L
Sbjct: 387 ETEVTDGAIREL 398
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 83/300 (27%), Positives = 137/300 (45%), Gaps = 17/300 (5%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
L+ DVTD L L NL L N I+D GL+HL L L++LS + A
Sbjct: 109 LAHHDVTDQKLAELAGQPNLVVLRLNGA-SITDAGLKHLAALDGLSALSLH-GTSRGATS 166
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
++ G+ + GL L+ + L L++ +TD+ + L+ + L+
Sbjct: 167 AGSYRGITD-------------AGLNELRAIKGLTDLSLGGIE-VTDAGARTLATMPQLR 212
Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
L + +K+TD+ + L L +LT ++L VT A L L+ L + L+ ++D
Sbjct: 213 VLGLEGTKITDAALENLAPLTELTEIDLTFTKVTDAGLKHLARFKKLTRVRLSSTAVTDA 272
Query: 244 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN-LESLNLDSCGIGDEGLVNLTGLCNL 302
G + + + L L+L + + D + L N L S++L+ +GDEG L L
Sbjct: 273 GVRELAALPELTDLDLSYTKAGDGGVTALAAAPNRLTSVSLEKTRVGDEGAKALAAAPGL 332
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L T+VG G+ L+ NL + L T ++D +R L L + L ++TD
Sbjct: 333 TRLNLGYTRVGDDGVSALAAAPNLTGLTLVATRVTDDGVRSLFACRKLAYVELRETEVTD 392
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 65/208 (31%), Positives = 97/208 (46%), Gaps = 13/208 (6%)
Query: 185 LQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 244
L ++ VTD +A L G L +L L G +T A L L+AL L L+L+
Sbjct: 107 LSLAHHDVTDQKLAELAGQPNLVVLRLNGASITDAGLKHLAALDGLSALSLHGT------ 160
Query: 245 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 304
+ GS + ITD L L+ + L L+L + D G L + L+
Sbjct: 161 SRGATSAGS-------YRGITDAGLNELRAIKGLTDLSLGGIEVTDAGARTLATMPQLRV 213
Query: 305 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 364
L L T++ + L +L+ LT L I+L+FT ++D L+ LA L + L + +TD G
Sbjct: 214 LGLEGTKITDAALENLAPLTELTEIDLTFTKVTDAGLKHLARFKKLTRVRLSSTAVTDAG 273
Query: 365 LAALTSLTGLTHLDLFGARITDSGAAYL 392
+ L +L LT LDL + D G L
Sbjct: 274 VRELAALPELTDLDLSYTKAGDGGVTAL 301
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 77/169 (45%), Gaps = 11/169 (6%)
Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC---- 286
F L+L ++D + + +L VL L ITD L HL L L +L+L
Sbjct: 105 FGLSLAHHDVTDQKLAELAGQPNLVVLRLNGASITDAGLKHLAALDGLSALSLHGTSRGA 164
Query: 287 -------GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
GI D GL L + L L L +V +G R L+ + L + L T I+D
Sbjct: 165 TSAGSYRGITDAGLNELRAIKGLTDLSLGGIEVTDAGARTLATMPQLRVLGLEGTKITDA 224
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 388
+L LA L+ L ++L ++TD GL L LT + L +TD+G
Sbjct: 225 ALENLAPLTELTEIDLTFTKVTDAGLKHLARFKKLTRVRLSSTAVTDAG 273
>gi|46445682|ref|YP_007047.1| hypothetical protein pc0048 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46399323|emb|CAF22772.1| hypothetical protein pc0048 [Candidatus Protochlamydia amoebophila
UWE25]
Length = 531
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 88/268 (32%), Positives = 142/268 (52%), Gaps = 30/268 (11%)
Query: 24 SLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLS-GSDVTDSGLIHLKDCSN 82
+L+ + + L L Q P + + + ++ + + ++ S + +TD+ L+ LK+C N
Sbjct: 264 ALKNYLQPIVASLLLNQTPHLAE-FKKILNYFSNEIEKLNFSENAHLTDAHLLALKNCKN 322
Query: 83 LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT 142
L++L C ++D GL L L+NL L+ + +T +G+ F LI L L+L C
Sbjct: 323 LKALHLQACHNLTDDGLASLTSLTNLQYLNLSCCDKLTNKGLAHFKSLIALQYLNLSGCA 382
Query: 143 RI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLK 201
I GL +LK L+ L+ LN LSG C+ +TD+G+A+LK
Sbjct: 383 FITDAGLAHLKPLVALQYLN--------------LSG----------CAFITDAGLAHLK 418
Query: 202 GLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNL 259
L L LNL GC +T A L L+ L +L +L+L+ C L++ G E+ + + +L+ LNL
Sbjct: 419 PLVALQYLNLSGCAFITDAGLAHLTPLVTLKHLDLSWCNSLTNAGLERLASLVALQHLNL 478
Query: 260 -GFNEITDECLVHLKGLTNLESLNLDSC 286
G +T+ L HL LTNL+ LNL+ C
Sbjct: 479 SGCIYLTEAGLTHLTSLTNLQQLNLNHC 506
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 75/193 (38%), Positives = 110/193 (56%), Gaps = 6/193 (3%)
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISC-SKVTDSGIAYLKGLQ 204
L+ LK L++L+++ C+ +TD + L+ LTNL+ L +SC K+T+ G+A+ K L
Sbjct: 312 AHLLALKNCKNLKALHLQACHNLTDDGLASLTSLTNLQYLNLSCCDKLTNKGLAHFKSLI 371
Query: 205 KLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNL-GF 261
L LNL GC +T A L L L +L YLNL+ C ++D G + +L+ LNL G
Sbjct: 372 ALQYLNLSGCAFITDAGLAHLKPLVALQYLNLSGCAFITDAGLAHLKPLVALQYLNLSGC 431
Query: 262 NEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRH 319
ITD L HL L L+ L+L C + + GL L L L+ L LS + +GL H
Sbjct: 432 AFITDAGLAHLTPLVTLKHLDLSWCNSLTNAGLERLASLVALQHLNLSGCIYLTEAGLTH 491
Query: 320 LSGLTNLESINLS 332
L+ LTNL+ +NL+
Sbjct: 492 LTSLTNLQQLNLN 504
Score = 87.8 bits (216), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 68/190 (35%), Positives = 102/190 (53%), Gaps = 3/190 (1%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
++TD GL L +NLQ L+ + C ++++ GL H + L L L+ IT G+
Sbjct: 333 NLTDDGLASLTSLTNLQYLNLSCCDKLTNKGLAHFKSLIALQYLNLSGCAFITDAGLAHL 392
Query: 128 AGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
L+ L L+L C I GL +LK L+ L+ LN+ C ITD+ + L+ L LK L
Sbjct: 393 KPLVALQYLNLSGCAFITDAGLAHLKPLVALQYLNLSGCAFITDAGLAHLTPLVTLKHLD 452
Query: 187 IS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQLSDDG 244
+S C+ +T++G+ L L L LNL GC +T A L L++L +L LNLN C+ D
Sbjct: 453 LSWCNSLTNAGLERLASLVALQHLNLSGCIYLTEAGLTHLTSLTNLQQLNLNHCEHFADV 512
Query: 245 CEKFSKIGSL 254
K + +L
Sbjct: 513 RFKLTHFRTL 522
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 57/147 (38%), Positives = 76/147 (51%), Gaps = 5/147 (3%)
Query: 238 CQLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVN 295
L+D +LK L+L + +TD+ L L LTNL+ LNL C + ++GL +
Sbjct: 307 AHLTDAHLLALKNCKNLKALHLQACHNLTDDGLASLTSLTNLQYLNLSCCDKLTNKGLAH 366
Query: 296 LTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLS-FTGISDGSLRKLAGLSSLKSL 353
L L+ L LS + +GL HL L L+ +NLS I+D L L L +L+ L
Sbjct: 367 FKSLIALQYLNLSGCAFITDAGLAHLKPLVALQYLNLSGCAFITDAGLAHLKPLVALQYL 426
Query: 354 NLDA-RQITDTGLAALTSLTGLTHLDL 379
NL ITD GLA LT L L HLDL
Sbjct: 427 NLSGCAFITDAGLAHLTPLVTLKHLDL 453
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 68/130 (52%), Gaps = 6/130 (4%)
Query: 58 SLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+L ++LSG + +TD+GL HLK LQ L+ + C I+D GL HL L L L
Sbjct: 397 ALQYLNLSGCAFITDAGLAHLKPLVALQYLNLSGCAFITDAGLAHLTPLVTLKHLDLSWC 456
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
N++T G++ A L+ L L+L C + GL +L L L+ LN+ C D K
Sbjct: 457 NSLTNAGLERLASLVALQHLNLSGCIYLTEAGLTHLTSLTNLQQLNLNHCEHFADVRFK- 515
Query: 176 LSGLTNLKSL 185
LT+ ++L
Sbjct: 516 ---LTHFRTL 522
Score = 39.7 bits (91), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 44/72 (61%), Gaps = 3/72 (4%)
Query: 326 LESINLSFTG-ISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGA- 382
+E +N S ++D L L +LK+L+L A +TD GLA+LTSLT L +L+L
Sbjct: 298 IEKLNFSENAHLTDAHLLALKNCKNLKALHLQACHNLTDDGLASLTSLTNLQYLNLSCCD 357
Query: 383 RITDSGAAYLRS 394
++T+ G A+ +S
Sbjct: 358 KLTNKGLAHFKS 369
>gi|290972120|ref|XP_002668808.1| predicted protein [Naegleria gruberi]
gi|284082332|gb|EFC36064.1| predicted protein [Naegleria gruberi]
Length = 329
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 84/310 (27%), Positives = 158/310 (50%), Gaps = 15/310 (4%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L S+D+ +++ G ++ + +L SLD + +I G +++ + LTSL+ N
Sbjct: 28 LTSLDIYSNEIGVEGAKYISEMKSLTSLDIHSN-EIGVEGSKYISEMKQLTSLNIGYN-Q 85
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG------LMKLESLNIKWCNCITDSD 172
I +G K + + L LD IH + ++G + +L SLNI + N I+
Sbjct: 86 IGVEGSKYISEMNQLTSLD------IHSNEIGVEGSKYISEMKQLTSLNIGY-NQISVEG 138
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
K +SG+ +L SL I +++ G Y+ +++LT LN+ + +S + SL
Sbjct: 139 AKYISGMKSLTSLYIGYNQIGVEGSKYISEMKQLTSLNIGHNEIGEEGAKYISGMKSLTS 198
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
LN+ Q+ +G + S++ L LN+G NEI+ E ++ G+ +L SLN+ IG EG
Sbjct: 199 LNIGYNQIGVEGSKYISEMKQLTSLNIGHNEISVEGSKYISGMKSLTSLNIGYNQIGVEG 258
Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
++ + L L + ++G G +++SG+ +L S+N+ + I + ++ + L S
Sbjct: 259 SKYISEMKQLTSLNIGYNEIGVEGAKYISGMKSLTSLNIGYNQIGVEGSKYISEMKQLTS 318
Query: 353 LNLDARQITD 362
LN+ +I +
Sbjct: 319 LNIGHNEIGE 328
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 83/321 (25%), Positives = 158/321 (49%), Gaps = 3/321 (0%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L S+D+ +++ G ++ + L SLD + +I G +++ + +LTSL +N
Sbjct: 4 LTSLDMHSNEIGVEGSKYISEMKQLTSLDI-YSNEIGVEGAKYISEMKSLTSLDIH-SNE 61
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
I +G K + + L L++ G + + +L SL+I N I K +S
Sbjct: 62 IGVEGSKYISEMKQLTSLNIGYNQIGVEGSKYISEMNQLTSLDI-HSNEIGVEGSKYISE 120
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
+ L SL I ++++ G Y+ G++ LT L + + +S + L LN+
Sbjct: 121 MKQLTSLNIGYNQISVEGAKYISGMKSLTSLYIGYNQIGVEGSKYISEMKQLTSLNIGHN 180
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
++ ++G + S + SL LN+G+N+I E ++ + L SLN+ I EG ++G
Sbjct: 181 EIGEEGAKYISGMKSLTSLNIGYNQIGVEGSKYISEMKQLTSLNIGHNEISVEGSKYISG 240
Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
+ +L L + Q+G G +++S + L S+N+ + I + ++G+ SL SLN+
Sbjct: 241 MKSLTSLNIGYNQIGVEGSKYISEMKQLTSLNIGYNEIGVEGAKYISGMKSLTSLNIGYN 300
Query: 359 QITDTGLAALTSLTGLTHLDL 379
QI G ++ + LT L++
Sbjct: 301 QIGVEGSKYISEMKQLTSLNI 321
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 84/316 (26%), Positives = 156/316 (49%), Gaps = 15/316 (4%)
Query: 83 LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT 142
L SLD + +I G +++ + LTSL +N I +G K + + +L LD
Sbjct: 4 LTSLDMHSN-EIGVEGSKYISEMKQLTSLDIY-SNEIGVEGAKYISEMKSLTSLD----- 56
Query: 143 RIHGGLVNLKG------LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG 196
IH + ++G + +L SLNI + N I K +S + L SL I +++ G
Sbjct: 57 -IHSNEIGVEGSKYISEMKQLTSLNIGY-NQIGVEGSKYISEMNQLTSLDIHSNEIGVEG 114
Query: 197 IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 256
Y+ +++LT LN+ ++ +S + SL L + Q+ +G + S++ L
Sbjct: 115 SKYISEMKQLTSLNIGYNQISVEGAKYISGMKSLTSLYIGYNQIGVEGSKYISEMKQLTS 174
Query: 257 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 316
LN+G NEI +E ++ G+ +L SLN+ IG EG ++ + L L + ++ G
Sbjct: 175 LNIGHNEIGEEGAKYISGMKSLTSLNIGYNQIGVEGSKYISEMKQLTSLNIGHNEISVEG 234
Query: 317 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 376
+++SG+ +L S+N+ + I + ++ + L SLN+ +I G ++ + LT
Sbjct: 235 SKYISGMKSLTSLNIGYNQIGVEGSKYISEMKQLTSLNIGYNEIGVEGAKYISGMKSLTS 294
Query: 377 LDLFGARITDSGAAYL 392
L++ +I G+ Y+
Sbjct: 295 LNIGYNQIGVEGSKYI 310
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 80/288 (27%), Positives = 139/288 (48%), Gaps = 2/288 (0%)
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW 164
++ LTSL +N I +G K + + L LD+ G + + L SL+I
Sbjct: 1 MNQLTSLDMH-SNEIGVEGSKYISEMKQLTSLDIYSNEIGVEGAKYISEMKSLTSLDI-H 58
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
N I K +S + L SL I +++ G Y+ + +LT L++ + +
Sbjct: 59 SNEIGVEGSKYISEMKQLTSLNIGYNQIGVEGSKYISEMNQLTSLDIHSNEIGVEGSKYI 118
Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284
S + L LN+ Q+S +G + S + SL L +G+N+I E ++ + L SLN+
Sbjct: 119 SEMKQLTSLNIGYNQISVEGAKYISGMKSLTSLYIGYNQIGVEGSKYISEMKQLTSLNIG 178
Query: 285 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 344
IG+EG ++G+ +L L + Q+G G +++S + L S+N+ IS + +
Sbjct: 179 HNEIGEEGAKYISGMKSLTSLNIGYNQIGVEGSKYISEMKQLTSLNIGHNEISVEGSKYI 238
Query: 345 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
+G+ SL SLN+ QI G ++ + LT L++ I GA Y+
Sbjct: 239 SGMKSLTSLNIGYNQIGVEGSKYISEMKQLTSLNIGYNEIGVEGAKYI 286
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 77/285 (27%), Positives = 141/285 (49%), Gaps = 3/285 (1%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ SL S+D+ +++ G ++ + L SL+ + QI G +++ ++ LTSL
Sbjct: 47 SEMKSLTSLDIHSNEIGVEGSKYISEMKQLTSLNIGYN-QIGVEGSKYISEMNQLTSLDI 105
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
+N I +G K + + L L++ G + G+ L SL I + N I
Sbjct: 106 H-SNEIGVEGSKYISEMKQLTSLNIGYNQISVEGAKYISGMKSLTSLYIGY-NQIGVEGS 163
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
K +S + L SL I +++ + G Y+ G++ LT LN+ + +S + L L
Sbjct: 164 KYISEMKQLTSLNIGHNEIGEEGAKYISGMKSLTSLNIGYNQIGVEGSKYISEMKQLTSL 223
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
N+ ++S +G + S + SL LN+G+N+I E ++ + L SLN+ IG EG
Sbjct: 224 NIGHNEISVEGSKYISGMKSLTSLNIGYNQIGVEGSKYISEMKQLTSLNIGYNEIGVEGA 283
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
++G+ +L L + Q+G G +++S + L S+N+ I +
Sbjct: 284 KYISGMKSLTSLNIGYNQIGVEGSKYISEMKQLTSLNIGHNEIGE 328
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 119/238 (50%), Gaps = 3/238 (1%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ + L S+D+ +++ G ++ + L SL+ + QIS G +++ G+ +LTSL +
Sbjct: 95 SEMNQLTSLDIHSNEIGVEGSKYISEMKQLTSLNIGYN-QISVEGAKYISGMKSLTSL-Y 152
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
N I +G K + + L L++ G + G+ L SLNI + N I
Sbjct: 153 IGYNQIGVEGSKYISEMKQLTSLNIGHNEIGEEGAKYISGMKSLTSLNIGY-NQIGVEGS 211
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
K +S + L SL I ++++ G Y+ G++ LT LN+ + +S + L L
Sbjct: 212 KYISEMKQLTSLNIGHNEISVEGSKYISGMKSLTSLNIGYNQIGVEGSKYISEMKQLTSL 271
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
N+ ++ +G + S + SL LN+G+N+I E ++ + L SLN+ IG+E
Sbjct: 272 NIGYNEIGVEGAKYISGMKSLTSLNIGYNQIGVEGSKYISEMKQLTSLNIGHNEIGEE 329
>gi|330506767|ref|YP_004383195.1| internalin-A [Methanosaeta concilii GP6]
gi|328927575|gb|AEB67377.1| internalin-A, putative [Methanosaeta concilii GP6]
Length = 567
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 122/365 (33%), Positives = 177/365 (48%), Gaps = 82/365 (22%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
+NL LD + QI+D L GL+NLT L NN IT + + +GLINL+ LDL
Sbjct: 166 TNLTDLDLSTN-QITDAS--PLSGLTNLTDLDL-DNNQIT--DVSSLSGLINLMNLDLS- 218
Query: 141 CTRIHGGLVNLKGLMKLESLNIKWCNCITD-------------------SDMKPLSGLTN 181
RI V+L GL + L++ W N ITD +D+ LSGLTN
Sbjct: 219 SNRITN--VSLSGLTNVVWLDL-WGNQITDVTLSGLTNLTWLDVSRNQIADVSSLSGLTN 275
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
L L + C+++TD ++ L GL LT L+L +T A LS L +L YL+L+ +++
Sbjct: 276 LTKLYLGCNQITD--VSSLSGLTNLTDLDLSTNQITDAS--PLSGLTNLTYLDLDNNRIN 331
Query: 242 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD----EGLVNLT 297
D + + L++ N N+++ L GLTNL+ L+L + I D GL NLT
Sbjct: 332 DVSLSDLTNLTDLELSNNQINDVS-----SLSGLTNLKDLDLSNNQINDISSLSGLTNLT 386
Query: 298 GL-------CNL---------KCLELSDTQV--------------------GSSGLRHLS 321
L N+ +CL+L + Q+ ++ LS
Sbjct: 387 DLELSSNEITNISSLSSLASLRCLDLDNNQIIDVSSLSALTSLKWLRLCSNHATDASSLS 446
Query: 322 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 381
L NL ++LS I+D S L+GL +L LNL + QITD ++ L+ L LT LDL
Sbjct: 447 SLVNLRWLDLSSNQITDVS--PLSGLYNLGWLNLSSNQITD--VSPLSGLANLTGLDLSS 502
Query: 382 ARITD 386
+ITD
Sbjct: 503 NQITD 507
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 123/355 (34%), Positives = 183/355 (51%), Gaps = 52/355 (14%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L+++DLS + +T+ + L +N+ LD + QI+D L GL+NLT L RN
Sbjct: 212 LMNLDLSSNRITN---VSLSGLTNVVWLDL-WGNQITD---VTLSGLTNLTWLDVSRNQI 264
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
+ + +GL NL KL L C +I + +L GL L L++ N ITD+ PLSG
Sbjct: 265 ---ADVSSLSGLTNLTKLYL-GCNQITD-VSSLSGLTNLTDLDLS-TNQITDA--SPLSG 316
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
LTNL L + +++ D ++ L L L L N + V+ SLS L +L L+L+
Sbjct: 317 LTNLTYLDLDNNRINDVSLSDLTNLTDLELSNNQINDVS-----SLSGLTNLKDLDLSNN 371
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITD----------ECL----------VHLKGLTNL 278
Q++D S + +L L L NEIT+ CL L LT+L
Sbjct: 372 QIND--ISSLSGLTNLTDLELSSNEITNISSLSSLASLRCLDLDNNQIIDVSSLSALTSL 429
Query: 279 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
+ L L S D +L+ L NL+ L+LS Q+ + + LSGL NL +NLS I+D
Sbjct: 430 KWLRLCSNHATDAS--SLSSLVNLRWLDLSSNQI--TDVSPLSGLYNLGWLNLSSNQITD 485
Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
S L+GL++L L+L + QITD ++ L++LT L +DL +I D A+ LR
Sbjct: 486 VS--PLSGLANLTGLDLSSNQITD--VSPLSNLTNLIWMDLRSKQIPD--ASTLR 534
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 124/352 (35%), Positives = 171/352 (48%), Gaps = 47/352 (13%)
Query: 17 SRCLTEVSLEAFRDCALQDLCLGQYPGV------NDKWMDVIASQGSSLLSVDLSGSDVT 70
S +T VSL + DL Q V N W+DV +Q + + S+
Sbjct: 219 SNRITNVSLSGLTNVVWLDLWGNQITDVTLSGLTNLTWLDVSRNQIADVSSL-------- 270
Query: 71 DSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL 130
SGL +L + C QI+D + L GL+NLT L N A +GL
Sbjct: 271 -SGLTNLTKL-------YLGCNQITD--VSSLSGLTNLTDLDLSTNQITDA---SPLSGL 317
Query: 131 INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS 190
NL LDL+ RI+ V+L L L L + N I +D+ LSGLTNLK L +S +
Sbjct: 318 TNLTYLDLDN-NRIND--VSLSDLTNLTDLELS-NNQI--NDVSSLSGLTNLKDLDLSNN 371
Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 250
++ D I+ L GL LT L L +T + SLS+L SL L+L+ Q+ D S
Sbjct: 372 QIND--ISSLSGLTNLTDLELSSNEITN--ISSLSSLASLRCLDLDNNQIID--VSSLSA 425
Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 310
+ SLK L L N TD L L NL L+L S I D + L+GL NL L LS
Sbjct: 426 LTSLKWLRLCSNHATDAS--SLSSLVNLRWLDLSSNQITD--VSPLSGLYNLGWLNLSSN 481
Query: 311 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
Q+ + + LSGL NL ++LS I+D S L+ L++L ++L ++QI D
Sbjct: 482 QI--TDVSPLSGLANLTGLDLSSNQITDVS--PLSNLTNLIWMDLRSKQIPD 529
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 100/277 (36%), Positives = 142/277 (51%), Gaps = 41/277 (14%)
Query: 131 INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS 190
I L+ D+ I G L+ + LE+L+++ N I SD LSGLT LK L++S +
Sbjct: 60 IKLLNADMSSIKDITG----LERCINLENLSLR-ENEI--SDASSLSGLTGLKRLELSSN 112
Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 250
++TD L GL L L+L +T L L+ L +L +S S
Sbjct: 113 QITD---VSLSGLANLETLSLWDNHITNVSLSGLTNLDTLLLWGNKIINVS-----SLSG 164
Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD- 309
+ +L L+L N+ITD L GLTNL L+LD+ I D + +L+GL NL L+LS
Sbjct: 165 LTNLTDLDLSTNQITDAS--PLSGLTNLTDLDLDNNQITD--VSSLSGLINLMNLDLSSN 220
Query: 310 --TQVGSSGLRH---------------LSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
T V SGL + LSGLTNL +++S I+D S L+GL++L
Sbjct: 221 RITNVSLSGLTNVVWLDLWGNQITDVTLSGLTNLTWLDVSRNQIADVS--SLSGLTNLTK 278
Query: 353 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 389
L L QITD +++L+ LT LT LDL +ITD+
Sbjct: 279 LYLGCNQITD--VSSLSGLTNLTDLDLSTNQITDASP 313
>gi|46446627|ref|YP_007992.1| hypothetical protein pc0993 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400268|emb|CAF23717.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 478
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 86/237 (36%), Positives = 125/237 (52%), Gaps = 11/237 (4%)
Query: 20 LTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSD-VTDSGLIHL 77
LT+ A ++C L+ L + D + +AS ++L + L G D VTD+GL HL
Sbjct: 238 LTDAHFSALKECKNLKILTFETCQALTDDGLAHLASL-TALQHLGLRGCDKVTDAGLAHL 296
Query: 78 KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLD 137
LQ LD +FC I+D GL HL L+ L L ++ +T G+ L L LD
Sbjct: 297 TSLRALQYLDLSFCRNITDAGLAHLTPLTALQRLLLKKCENLTGAGLAHLTPLKALQYLD 356
Query: 138 LERCTRI-HGGLVNLKGLMKLESLNIKWCNCITD---SDMKPLSGLTNLKSLQISCSKVT 193
L + GL +L+ L+ L+ L++ C +TD + + PL LT+LK I C K+T
Sbjct: 357 LSYWDNLTDDGLAHLRPLVALQHLDLANCYELTDAGLAHLTPLVALTHLK--LIWCHKLT 414
Query: 194 DSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKF 248
D+G+A+L+ L L LNL C +T A L L L +L YLNL+ C +L+D G F
Sbjct: 415 DAGLAHLRPLVALKHLNLSSCRNLTDAGLAHLIPLTALQYLNLSDCRKLTDTGLASF 471
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 85/251 (33%), Positives = 132/251 (52%), Gaps = 30/251 (11%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLL 209
LK L+ L + C +TD + L+ LT L+ L + C KVTD+G+A+L L+ L L
Sbjct: 246 LKECKNLKILTFETCQALTDDGLAHLASLTALQHLGLRGCDKVTDAGLAHLTSLRALQYL 305
Query: 210 NLEGCP-VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF-NEITD 266
+L C +T A L L+ L +L L L +C+ L+ G + + +L+ L+L + + +TD
Sbjct: 306 DLSFCRNITDAGLAHLTPLTALQRLLLKKCENLTGAGLAHLTPLKALQYLDLSYWDNLTD 365
Query: 267 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 326
+ L HL+ L L+ L+L +C EL+D +GL HL+ L L
Sbjct: 366 DGLAHLRPLVALQHLDLANC------------------YELTD-----AGLAHLTPLVAL 402
Query: 327 ESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGAR- 383
+ L + ++D L L L +LK LNL + R +TD GLA L LT L +L+L R
Sbjct: 403 THLKLIWCHKLTDAGLAHLRPLVALKHLNLSSCRNLTDAGLAHLIPLTALQYLNLSDCRK 462
Query: 384 ITDSGAAYLRS 394
+TD+G A ++
Sbjct: 463 LTDTGLASFKA 473
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 80/240 (33%), Positives = 125/240 (52%), Gaps = 7/240 (2%)
Query: 77 LKDCSN-LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135
+K SN + L F+ ++D L+ NL L+F A+T G+ A L L
Sbjct: 220 IKHLSNEIDILHFSNQTYLTDAHFSALKECKNLKILTFETCQALTDDGLAHLASLTALQH 279
Query: 136 LDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVT 193
L L C ++ GL +L L L+ L++ +C ITD+ + L+ LT L+ L + C +T
Sbjct: 280 LGLRGCDKVTDAGLAHLTSLRALQYLDLSFCRNITDAGLAHLTPLTALQRLLLKKCENLT 339
Query: 194 DSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKI 251
+G+A+L L+ L L+L +T L L L +L +L+L C +L+D G + +
Sbjct: 340 GAGLAHLTPLKALQYLDLSYWDNLTDDGLAHLRPLVALQHLDLANCYELTDAGLAHLTPL 399
Query: 252 GSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD 309
+L L L + +++TD L HL+ L L+ LNL SC + D GL +L L L+ L LSD
Sbjct: 400 VALTHLKLIWCHKLTDAGLAHLRPLVALKHLNLSSCRNLTDAGLAHLIPLTALQYLNLSD 459
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 69/186 (37%), Positives = 104/186 (55%), Gaps = 7/186 (3%)
Query: 216 VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLK 273
+T A +L +L L CQ L+DDG + + +L+ L L G +++TD L HL
Sbjct: 238 LTDAHFSALKECKNLKILTFETCQALTDDGLAHLASLTALQHLGLRGCDKVTDAGLAHLT 297
Query: 274 GLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINL 331
L L+ L+L C I D GL +LT L L+ L L + + +GL HL+ L L+ ++L
Sbjct: 298 SLRALQYLDLSFCRNITDAGLAHLTPLTALQRLLLKKCENLTGAGLAHLTPLKALQYLDL 357
Query: 332 SF-TGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFG-ARITDSG 388
S+ ++D L L L +L+ L+L + ++TD GLA LT L LTHL L ++TD+G
Sbjct: 358 SYWDNLTDDGLAHLRPLVALQHLDLANCYELTDAGLAHLTPLVALTHLKLIWCHKLTDAG 417
Query: 389 AAYLRS 394
A+LR
Sbjct: 418 LAHLRP 423
Score = 38.5 bits (88), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TD+GL HL+ L+ L+ + C ++D GL HL L+ L L+ +T G+ +F
Sbjct: 413 LTDAGLAHLRPLVALKHLNLSSCRNLTDAGLAHLIPLTALQYLNLSDCRKLTDTGLASFK 472
Query: 129 GLI 131
I
Sbjct: 473 ASI 475
>gi|290996081|ref|XP_002680611.1| predicted protein [Naegleria gruberi]
gi|284094232|gb|EFC47867.1| predicted protein [Naegleria gruberi]
Length = 412
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 81/294 (27%), Positives = 136/294 (46%), Gaps = 32/294 (10%)
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW 164
+ LTSL N I +G K + + L LD+ G + + +L SLNI +
Sbjct: 125 MKQLTSLDISENQ-IGDEGAKYISEMRQLTSLDISDIEIGDEGAKYISEMKQLTSLNISY 183
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
N I+D K +S + L SL I + + D G Y++ +++LT LN+ +
Sbjct: 184 -NAISDEGAKFISEMKQLMSLHIYKNLIGDEGAKYIREMKQLTSLNISYNSI-------- 234
Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284
SD+G + S++ L L++ FNEI+ E + + L SL++
Sbjct: 235 ----------------SDEGAKFISEMKQLTSLDIVFNEISGEGAKFISEMKQLTSLDIS 278
Query: 285 SCGIGDEGLVNLTGLCNLKCLELSDT------QVGSSGLRHLSGLTNLESINLSFTGISD 338
IGDEG+ L+ + L L +S Q+ G + +S + L S+++S+ ISD
Sbjct: 279 DNEIGDEGVKYLSEMKQLTSLTISGNEITYCNQISEEGAKFISEMKQLTSLDISYNLISD 338
Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
+ ++ + L SLN+ I+ G ++ + LT LD+ RI D GA Y+
Sbjct: 339 EGAKYISEMKQLTSLNISYNSISGEGAKFISEMKQLTSLDIVSNRIGDEGAKYI 392
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 75/280 (26%), Positives = 147/280 (52%), Gaps = 9/280 (3%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L S+D+S + + D G ++ + L SLD + I+I D G +++ + LTSL+ N A
Sbjct: 128 LTSLDISENQIGDEGAKYISEMRQLTSLDIS-DIEIGDEGAKYISEMKQLTSLNISYN-A 185
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
I+ +G K + + L+ L + + G ++ + +L SLNI + N I+D K +S
Sbjct: 186 ISDEGAKFISEMKQLMSLHIYKNLIGDEGAKYIREMKQLTSLNISY-NSISDEGAKFISE 244
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN-- 236
+ L SL I ++++ G ++ +++LT L++ + + LS + L L ++
Sbjct: 245 MKQLTSLDIVFNEISGEGAKFISEMKQLTSLDISDNEIGDEGVKYLSEMKQLTSLTISGN 304
Query: 237 ---RC-QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
C Q+S++G + S++ L L++ +N I+DE ++ + L SLN+ I EG
Sbjct: 305 EITYCNQISEEGAKFISEMKQLTSLDISYNLISDEGAKYISEMKQLTSLNISYNSISGEG 364
Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 332
++ + L L++ ++G G +++S + L S+N+S
Sbjct: 365 AKFISEMKQLTSLDIVSNRIGDEGAKYISEMKQLTSLNIS 404
Score = 88.2 bits (217), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 115/227 (50%), Gaps = 6/227 (2%)
Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
+ K ++ + L SL IS +++ D G Y+ +++LT L++ + +S + L
Sbjct: 118 EAKFITEMKQLTSLDISENQIGDEGAKYISEMRQLTSLDISDIEIGDEGAKYISEMKQLT 177
Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
LN++ +SD+G + S++ L L++ N I DE +++ + L SLN+ I DE
Sbjct: 178 SLNISYNAISDEGAKFISEMKQLMSLHIYKNLIGDEGAKYIREMKQLTSLNISYNSISDE 237
Query: 292 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 351
G ++ + L L++ ++ G + +S + L S+++S I D ++ L+ + L
Sbjct: 238 GAKFISEMKQLTSLDIVFNEISGEGAKFISEMKQLTSLDISDNEIGDEGVKYLSEMKQLT 297
Query: 352 SLNLDARQIT------DTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
SL + +IT + G ++ + LT LD+ I+D GA Y+
Sbjct: 298 SLTISGNEITYCNQISEEGAKFISEMKQLTSLDISYNLISDEGAKYI 344
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 113/229 (49%), Gaps = 8/229 (3%)
Query: 41 YPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLE 100
Y ++D+ I S+ L+S+ + + + D G ++++ L SL+ ++ ISD G +
Sbjct: 183 YNAISDEGAKFI-SEMKQLMSLHIYKNLIGDEGAKYIREMKQLTSLNISYN-SISDEGAK 240
Query: 101 HLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 160
+ + LTSL N I+ +G K + + L LD+ G+ L + +L SL
Sbjct: 241 FISEMKQLTSLDIVFN-EISGEGAKFISEMKQLTSLDISDNEIGDEGVKYLSEMKQLTSL 299
Query: 161 -----NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215
I +CN I++ K +S + L SL IS + ++D G Y+ +++LT LN+
Sbjct: 300 TISGNEITYCNQISEEGAKFISEMKQLTSLDISYNLISDEGAKYISEMKQLTSLNISYNS 359
Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 264
++ +S + L L++ ++ D+G + S++ L LN+ N+
Sbjct: 360 ISGEGAKFISEMKQLTSLDIVSNRIGDEGAKYISEMKQLTSLNISDNQF 408
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 53/98 (54%)
Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355
+T + L L++S+ Q+G G +++S + L S+++S I D + ++ + L SLN+
Sbjct: 122 ITEMKQLTSLDISENQIGDEGAKYISEMRQLTSLDISDIEIGDEGAKYISEMKQLTSLNI 181
Query: 356 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
I+D G ++ + L L ++ I D GA Y+R
Sbjct: 182 SYNAISDEGAKFISEMKQLMSLHIYKNLIGDEGAKYIR 219
>gi|301126468|ref|XP_002909849.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262101999|gb|EEY60051.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 427
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 112/345 (32%), Positives = 179/345 (51%), Gaps = 15/345 (4%)
Query: 46 DKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL-R 103
D+ + + Q L V+L+G S +TD + L + S L S+ C Q++D ++ L
Sbjct: 75 DENLMSLPMQFPHLKEVNLTGCSSLTDESVEQLANLSGLTSVALKGCYQVTDKSIKLLTE 134
Query: 104 GLSN-LTSLSFRRNNAITAQGMKAFAG-LINLVKLDLERCTRI-HGGLVNLKGLMKLESL 160
SN LTS++ ++ +G+ A A L L L+L C+++ G+ L L L++L
Sbjct: 135 SQSNSLTSVNLGYCKVVSDEGITAIASNLSKLNYLNLRGCSQVGDNGIRALARLKNLQTL 194
Query: 161 NIKWCN--CITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PV 216
N+ +CN +TD + L+ +T+L SL +S CS++TD GI+ L L KL L + V
Sbjct: 195 NLWYCNQGALTDGGISALAEVTSLTSLNLSNCSQLTDEGISSLSTLVKLRHLEIANVGEV 254
Query: 217 TAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKG 274
T +L+ L +L L++ C ++D G E L NL + +EI D H++
Sbjct: 255 TDQGFLALAPLVNLVTLDVAGCYNITDAGTEVLVNFPKLASCNLWYCSEIGDATFQHMES 314
Query: 275 LTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLEL-SDTQVGSSGLRHLSGLTNLESINL- 331
LT + LN CG + D GL ++ L NL L++ S V GL LS L L+S+ L
Sbjct: 315 LTKMRFLNFMKCGKVTDRGLRSIAKLRNLTSLDMVSCFNVTDEGLNELSKLNRLKSLYLG 374
Query: 332 SFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLT 375
+GI D + L+ LSSL L+L + RQ+ + L + TG++
Sbjct: 375 GCSGIRDEGIAALSHLSSLVILDLSNCRQVGNKALLGIDDGTGVS 419
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 103/312 (33%), Positives = 162/312 (51%), Gaps = 15/312 (4%)
Query: 20 LTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIA-SQGSSLLSVDLSGSDV-TDSGLIH 76
LT+ S+E + + L + L V DK + ++ SQ +SL SV+L V +D G+
Sbjct: 99 LTDESVEQLANLSGLTSVALKGCYQVTDKSIKLLTESQSNSLTSVNLGYCKVVSDEGITA 158
Query: 77 L-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN--AITAQGMKAFAGLINL 133
+ + S L L+ C Q+ D G+ L L NL +L+ N A+T G+ A A + +L
Sbjct: 159 IASNLSKLNYLNLRGCSQVGDNGIRALARLKNLQTLNLWYCNQGALTDGGISALAEVTSL 218
Query: 134 VKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSK 191
L+L C+++ G+ +L L+KL L I +TD L+ L NL +L ++ C
Sbjct: 219 TSLNLSNCSQLTDEGISSLSTLVKLRHLEIANVGEVTDQGFLALAPLVNLVTLDVAGCYN 278
Query: 192 VTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFS 249
+TD+G L KL NL C + A + +L + +LN +C +++D G +
Sbjct: 279 ITDAGTEVLVNFPKLASCNLWYCSEIGDATFQHMESLTKMRFLNFMKCGKVTDRGLRSIA 338
Query: 250 KIGSLKVLNLG--FNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLE 306
K+ +L L++ FN +TDE L L L L+SL L C GI DEG+ L+ L +L L+
Sbjct: 339 KLRNLTSLDMVSCFN-VTDEGLNELSKLNRLKSLYLGGCSGIRDEGIAALSHLSSLVILD 397
Query: 307 LSD-TQVGSSGL 317
LS+ QVG+ L
Sbjct: 398 LSNCRQVGNKAL 409
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 97/316 (30%), Positives = 161/316 (50%), Gaps = 14/316 (4%)
Query: 82 NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF--AGLINLVKLDLE 139
+L+ ++ C ++D +E L LS LTS++ + +T + +K + +L ++L
Sbjct: 87 HLKEVNLTGCSSLTDESVEQLANLSGLTSVALKGCYQVTDKSIKLLTESQSNSLTSVNLG 146
Query: 140 RCTRI--HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSK--VTD 194
C + G L KL LN++ C+ + D+ ++ L+ L NL++L + C++ +TD
Sbjct: 147 YCKVVSDEGITAIASNLSKLNYLNLRGCSQVGDNGIRALARLKNLQTLNLWYCNQGALTD 206
Query: 195 SGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNL-NRCQLSDDGCEKFSKIG 252
GI+ L + LT LNL C +T + SLS L L +L + N +++D G + +
Sbjct: 207 GGISALAEVTSLTSLNLSNCSQLTDEGISSLSTLVKLRHLEIANVGEVTDQGFLALAPLV 266
Query: 253 SLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDT 310
+L L++ G ITD L L S NL C IGD ++ L ++ L
Sbjct: 267 NLVTLDVAGCYNITDAGTEVLVNFPKLASCNLWYCSEIGDATFQHMESLTKMRFLNFMKC 326
Query: 311 -QVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAA 367
+V GLR ++ L NL S+++ S ++D L +L+ L+ LKSL L I D G+AA
Sbjct: 327 GKVTDRGLRSIAKLRNLTSLDMVSCFNVTDEGLNELSKLNRLKSLYLGGCSGIRDEGIAA 386
Query: 368 LTSLTGLTHLDLFGAR 383
L+ L+ L LDL R
Sbjct: 387 LSHLSSLVILDLSNCR 402
>gi|307108381|gb|EFN56621.1| hypothetical protein CHLNCDRAFT_57520 [Chlorella variabilis]
Length = 790
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 129/413 (31%), Positives = 190/413 (46%), Gaps = 71/413 (17%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSG-SDVTD--SGLIHLKDCSNLQSLDFNFCIQISDGGLE 100
V D ++ +A + L ++D++G + VTD +G L L L+ C ++D GLE
Sbjct: 338 VGDGVLEAVA-RCRGLRALDMAGCTGVTDEGTGFTQLSRLQQLSELNLKGCYSLADDGLE 396
Query: 101 HLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGG----LVNLKGLMK 156
L L +L +L+ + +T +G+ +GL L L+L+ C + G L L L +
Sbjct: 397 LLPTLRSLAALNLQECWQVTDRGLAHLSGLTRLEDLNLQGCRNLANGAGQSLSGLGALHR 456
Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP 215
L SL ++ C+ + D + L GLT+L+ L +S C ++T G+A L L+ L L L+ C
Sbjct: 457 LTSLCMRGCDRLADGALDFLPGLTSLRQLDLSGCKELTADGLAPLSSLRLLACLRLQHCS 516
Query: 216 --VTAACLDSLSALGSLFYLNLNRC------------------QLSDDGCEKF------- 248
AA L LS L SL LNL C QLS +GC
Sbjct: 517 GLRGAAALRPLSTLSSLTALNLGGCTAIHGQSLRALGTLSALRQLSLEGCRGVVLLDAGL 576
Query: 249 ----SKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSC----------------- 286
+ L LNL G + +TD L + LT L SLNL C
Sbjct: 577 EALAPSLHRLTSLNLQGCSTLTDAGLQKMGPLTGLVSLNLSECPSITGAGAAAWRMPLLA 636
Query: 287 --------GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLS-GLTNLESINLS-FTG 335
G+ D GL L GL L+ L L +VG GL ++ L L ++ L +
Sbjct: 637 SLQLQNSPGVDDAGLAALAGLTALRSLNLKQCKRVGDGGLAAMAPALQRLTALCLQGMSE 696
Query: 336 ISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDL-FGARITD 386
++D + +L L SL+ L L A Q D G+AALT L+ L+ LDL + +ITD
Sbjct: 697 VTDAGVAQLGALRSLQDLELQFAWQFGDAGIAALTRLSALSRLDLMYSWKITD 749
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 108/352 (30%), Positives = 162/352 (46%), Gaps = 47/352 (13%)
Query: 65 SGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM 124
+G ++ G +H L SL C +++DG L+ L GL++L L +TA G+
Sbjct: 444 AGQSLSGLGALH-----RLTSLCMRGCDRLADGALDFLPGLTSLRQLDLSGCKELTADGL 498
Query: 125 KAFAGLINLVKLDLERCTRIHGG--LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNL 182
+ L L L L+ C+ + G L L L L +LN+ C I ++ L L+ L
Sbjct: 499 APLSSLRLLACLRLQHCSGLRGAAALRPLSTLSSLTALNLGGCTAIHGQSLRALGTLSAL 558
Query: 183 KSLQIS-CSKVT--DSGI-AYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNR 237
+ L + C V D+G+ A L +LT LNL+GC +T A L + L L LNL+
Sbjct: 559 RQLSLEGCRGVVLLDAGLEALAPSLHRLTSLNLQGCSTLTDAGLQKMGPLTGLVSLNLSE 618
Query: 238 CQ-LSDDGCE--KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGL 293
C ++ G + + SL++ N + D L L GLT L SLNL C +GD GL
Sbjct: 619 CPSITGAGAAAWRMPLLASLQLQN--SPGVDDAGLAALAGLTALRSLNLKQCKRVGDGGL 676
Query: 294 V-------NLTGLCNLKCLELSDT--------------------QVGSSGLRHLSGLTNL 326
LT LC E++D Q G +G+ L+ L+ L
Sbjct: 677 AAMAPALQRLTALCLQGMSEVTDAGVAQLGALRSLQDLELQFAWQFGDAGIAALTRLSAL 736
Query: 327 ESINLSFTG-ISDGSLRKLAGLSSLKSLN-LDARQITDTGLAALTSLTGLTH 376
++L ++ I+D SLR L ++SL SLN L ++T G A + L H
Sbjct: 737 SRLDLMYSWKITDDSLRSLGRMTSLLSLNVLGCHRLTPGGKAEVAHLLDSAH 788
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 95/330 (28%), Positives = 140/330 (42%), Gaps = 61/330 (18%)
Query: 126 AFAGLINLVKLDLERCTRIHGG-LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A A ++ L+L C ++ L ++ L L ++++ C +TD + L+ L L
Sbjct: 174 AAASFPSVQVLELGHCRQLQDWDLADVALLSTLRCVSLRGCEGVTDEGVAQLARLPRLSR 233
Query: 185 LQI-SCSKVTDSGIAYLKGLQKLTLLNL-----------------EGCPVTAACLDSLSA 226
L + +C K+TD G+A L G+ L L G + AA
Sbjct: 234 LVLRNCVKLTDVGLARLAGVSGRELPQLWAPAGPGSPPPVPRLRSPGARLPAAAAPPPCR 293
Query: 227 LGSLFYLNLNRCQLSDD--------------------GCEKFSKIG-----------SLK 255
L L+L C L + GC + S +G L+
Sbjct: 294 RPPLASLDLAGCVLLTERGFAAAASGLAASLTELLLGGCSRVSTVGDGVLEAVARCRGLR 353
Query: 256 VLNL-GFNEITDE--CLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-T 310
L++ G +TDE L L L LNL C + D+GL L L +L L L +
Sbjct: 354 ALDMAGCTGVTDEGTGFTQLSRLQQLSELNLKGCYSLADDGLELLPTLRSLAALNLQECW 413
Query: 311 QVGSSGLRHLSGLTNLESINLS-FTGISDGSLRKLAGLSSLKSL-NLDAR---QITDTGL 365
QV GL HLSGLT LE +NL +++G+ + L+GL +L L +L R ++ D L
Sbjct: 414 QVTDRGLAHLSGLTRLEDLNLQGCRNLANGAGQSLSGLGALHRLTSLCMRGCDRLADGAL 473
Query: 366 AALTSLTGLTHLDLFGAR-ITDSGAAYLRS 394
L LT L LDL G + +T G A L S
Sbjct: 474 DFLPGLTSLRQLDLSGCKELTADGLAPLSS 503
Score = 45.1 bits (105), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 56/115 (48%), Gaps = 1/115 (0%)
Query: 34 QDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCI 92
+ L L Q V D + +A L ++ L G S+VTD+G+ L +LQ L+ F
Sbjct: 661 RSLNLKQCKRVGDGGLAAMAPALQRLTALCLQGMSEVTDAGVAQLGALRSLQDLELQFAW 720
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGG 147
Q D G+ L LS L+ L + IT +++ + +L+ L++ C R+ G
Sbjct: 721 QFGDAGIAALTRLSALSRLDLMYSWKITDDSLRSLGRMTSLLSLNVLGCHRLTPG 775
>gi|168704615|ref|ZP_02736892.1| leucine-rich repeat domain protein [Gemmata obscuriglobus UQM 2246]
Length = 294
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 72/226 (31%), Positives = 116/226 (51%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
I D+D+K L+ +L L + ++V+D+G+ L + LT L L VT A L ++ L
Sbjct: 59 IADADLKELAAFKHLAVLSLYDTQVSDAGLKELTSSKGLTELLLSRTKVTDAGLKDVAKL 118
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
L L L+ ++D G + + L L L +ITD ++ L L +L LD
Sbjct: 119 THLEKLALDETAVTDAGIGELVPLKRLSELWLMGTKITDAAFKNVAKLKGLTTLRLDGAK 178
Query: 288 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 347
I GL + + L LS T + +GL+ ++ +L + LS I+DG L++LA L
Sbjct: 179 ITGVGLKQVAAIDGFHSLYLSGTDISEAGLKEIAAFKSLRILQLSECKITDGGLKELAAL 238
Query: 348 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
L +L+L+ Q+TD G+ +L SL L L L ++TD+G +R
Sbjct: 239 DKLTTLHLEKTQVTDAGVKSLASLKKLKVLHLTSTQVTDAGVKTIR 284
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 74/261 (28%), Positives = 121/261 (46%), Gaps = 27/261 (10%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
S++ + L G+ + D+ L L +L L + Q+SD GL+ L LT L R
Sbjct: 48 SVIELWLEGTKIADADLKELAAFKHLAVLSL-YDTQVSDAGLKELTSSKGLTELLLSRTK 106
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
+T G+K A L +L KL L+ +TD+ + L
Sbjct: 107 -VTDAGLKDVAKLTHLEKLALDE-------------------------TAVTDAGIGELV 140
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
L L L + +K+TD+ + L+ LT L L+G +T L ++A+ L L+
Sbjct: 141 PLKRLSELWLMGTKITDAAFKNVAKLKGLTTLRLDGAKITGVGLKQVAAIDGFHSLYLSG 200
Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
+S+ G ++ + SL++L L +ITD L L L L +L+L+ + D G+ +L
Sbjct: 201 TDISEAGLKEIAAFKSLRILQLSECKITDGGLKELAALDKLTTLHLEKTQVTDAGVKSLA 260
Query: 298 GLCNLKCLELSDTQVGSSGLR 318
L LK L L+ TQV +G++
Sbjct: 261 SLKKLKVLHLTSTQVTDAGVK 281
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 104/210 (49%)
Query: 185 LQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 244
L + +K+ D+ + L + L +L+L V+ A L L++ L L L+R +++D G
Sbjct: 52 LWLEGTKIADADLKELAAFKHLAVLSLYDTQVSDAGLKELTSSKGLTELLLSRTKVTDAG 111
Query: 245 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 304
+ +K+ L+ L L +TD + L L L L L I D N+ L L
Sbjct: 112 LKDVAKLTHLEKLALDETAVTDAGIGELVPLKRLSELWLMGTKITDAAFKNVAKLKGLTT 171
Query: 305 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 364
L L ++ GL+ ++ + S+ LS T IS+ L+++A SL+ L L +ITD G
Sbjct: 172 LRLDGAKITGVGLKQVAAIDGFHSLYLSGTDISEAGLKEIAAFKSLRILQLSECKITDGG 231
Query: 365 LAALTSLTGLTHLDLFGARITDSGAAYLRS 394
L L +L LT L L ++TD+G L S
Sbjct: 232 LKELAALDKLTTLHLEKTQVTDAGVKSLAS 261
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 69/137 (50%)
Query: 252 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 311
GS+ L L +I D L L +L L+L + D GL LT L L LS T+
Sbjct: 47 GSVIELWLEGTKIADADLKELAAFKHLAVLSLYDTQVSDAGLKELTSSKGLTELLLSRTK 106
Query: 312 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 371
V +GL+ ++ LT+LE + L T ++D + +L L L L L +ITD + L
Sbjct: 107 VTDAGLKDVAKLTHLEKLALDETAVTDAGIGELVPLKRLSELWLMGTKITDAAFKNVAKL 166
Query: 372 TGLTHLDLFGARITDSG 388
GLT L L GA+IT G
Sbjct: 167 KGLTTLRLDGAKITGVG 183
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 71/138 (51%), Gaps = 3/138 (2%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
L G+ +TD+ ++ L +L + +I+ GL+ + + SL + I+ G
Sbjct: 150 LMGTKITDAAFKNVAKLKGLTTLRLDGA-KITGVGLKQVAAIDGFHSL-YLSGTDISEAG 207
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
+K A +L L L C GGL L L KL +L+++ +TD+ +K L+ L LK
Sbjct: 208 LKEIAAFKSLRILQLSECKITDGGLKELAALDKLTTLHLEKTQ-VTDAGVKSLASLKKLK 266
Query: 184 SLQISCSKVTDSGIAYLK 201
L ++ ++VTD+G+ ++
Sbjct: 267 VLHLTSTQVTDAGVKTIR 284
Score = 45.1 bits (105), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 2/92 (2%)
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
S+ LSG+D++++GL + +L+ L + C +I+DGGL+ L L LT+L + +T
Sbjct: 195 SLYLSGTDISEAGLKEIAAFKSLRILQLSEC-KITDGGLKELAALDKLTTLHLEKTQ-VT 252
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
G+K+ A L L L L G+ ++
Sbjct: 253 DAGVKSLASLKKLKVLHLTSTQVTDAGVKTIR 284
>gi|207743293|ref|YP_002259685.1| type III effector gala6 protein [Ralstonia solanacearum IPO1609]
gi|206594690|emb|CAQ61617.1| type III effector gala6 protein [Ralstonia solanacearum IPO1609]
Length = 625
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 118/386 (30%), Positives = 181/386 (46%), Gaps = 10/386 (2%)
Query: 11 FNELVYSRCLTEVSLEAFR--DCALQDLCLGQY--PGVNDKWMDVIASQGSSLLSVDLSG 66
+ L R E++LEA + ++ L +G+ GV++ + ++A++ L S+ L+G
Sbjct: 139 YPALKSVRFKGELTLEALKALPPGVEHLEIGRSTGSGVSNAGLALLATR--PLKSLSLNG 196
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
++ G L C++L SL C I D L ++ SL N I G +A
Sbjct: 197 IEIDAEGARLLATCASLTSLSLTGC-SIGDRAATALAQSRSIASLDLSVN-MIGPDGARA 254
Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
AG LV L+L G + L L+SLN N I D+ + + T L L
Sbjct: 255 LAG-APLVSLNLHNNGIGDEGALALATSGTLKSLNAS-NNGIGDAGVLGFADNTVLTQLN 312
Query: 187 ISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE 246
++ + + +G L+ LT L+L + A L+ SL LN+ ++ DDG E
Sbjct: 313 LAGNMIGPAGARALRRNTSLTELDLSTNRLGDAGAQVLAGSRSLTSLNVRNNEIGDDGTE 372
Query: 247 KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 306
++ +LK LNL +N I + L G T L L+L +C I G L ++ L
Sbjct: 373 ALARNTTLKSLNLSYNRIGLQGAGALGGNTTLSELDLRACAIDPYGASALARNTSVASLH 432
Query: 307 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 366
L ++G SG R ++ + L ++LS I D + LAG SL SLNLD +I D G A
Sbjct: 433 LGSNRIGDSGARAIATIRTLTLLDLSRNNIHDAGAQVLAGNDSLMSLNLDDNEIGDDGTA 492
Query: 367 ALTSLTGLTHLDLFGARITDSGAAYL 392
AL LT L+L RI +GA +L
Sbjct: 493 ALAQHPRLTSLNLASNRIGPTGAQHL 518
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 101/340 (29%), Positives = 157/340 (46%), Gaps = 4/340 (1%)
Query: 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
G+ L+S++L + + D G + L L+SL+ + I D G+ + LT L+
Sbjct: 257 GAPLVSLNLHNNGIGDEGALALATSGTLKSLNASNN-GIGDAGVLGFADNTVLTQLNLA- 314
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
N I G +A +L +LDL G L G L SLN++ N I D +
Sbjct: 315 GNMIGPAGARALRRNTSLTELDLSTNRLGDAGAQVLAGSRSLTSLNVR-NNEIGDDGTEA 373
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
L+ T LKSL +S +++ G L G L+ L+L C + +L+ S+ L+L
Sbjct: 374 LARNTTLKSLNLSYNRIGLQGAGALGGNTTLSELDLRACAIDPYGASALARNTSVASLHL 433
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
++ D G + I +L +L+L N I D L G +L SLNLD IGD+G
Sbjct: 434 GSNRIGDSGARAIATIRTLTLLDLSRNNIHDAGAQVLAGNDSLMSLNLDDNEIGDDGTAA 493
Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355
L L L L+ ++G +G +HL+ L ++LS I L+ + L +LN+
Sbjct: 494 LAQHPRLTSLNLASNRIGPTGAQHLAKSATLTELDLSENRIGPEGAEALSLSTVLTTLNV 553
Query: 356 DARQITDTGLAALTSL-TGLTHLDLFGARITDSGAAYLRS 394
I + G A T LT LD R+ ++GA L +
Sbjct: 554 SGNAIGEAGARAFAEKSTSLTSLDARNNRMGEAGAKMLEA 593
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 98/363 (26%), Positives = 152/363 (41%), Gaps = 28/363 (7%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+SL S+ L+G + D L ++ SLD + + I G L G + L SL+ N
Sbjct: 211 ASLTSLSLTGCSIGDRAATALAQSRSIASLDLSVNM-IGPDGARALAG-APLVSLNLH-N 267
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N I +G A A L L+ G++ L LN+ N I + + L
Sbjct: 268 NGIGDEGALALATSGTLKSLNASNNGIGDAGVLGFADNTVLTQLNLA-GNMIGPAGARAL 326
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL- 235
T+L L +S +++ D+G L G + LT LN+ + ++L+ +L LNL
Sbjct: 327 RRNTSLTELDLSTNRLGDAGAQVLAGSRSLTSLNVRNNEIGDDGTEALARNTTLKSLNLS 386
Query: 236 -NR----------------------CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
NR C + G ++ S+ L+LG N I D +
Sbjct: 387 YNRIGLQGAGALGGNTTLSELDLRACAIDPYGASALARNTSVASLHLGSNRIGDSGARAI 446
Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 332
+ L L+L I D G L G +L L L D ++G G L+ L S+NL+
Sbjct: 447 ATIRTLTLLDLSRNNIHDAGAQVLAGNDSLMSLNLDDNEIGDDGTAALAQHPRLTSLNLA 506
Query: 333 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
I + LA ++L L+L +I G AL+ T LT L++ G I ++GA
Sbjct: 507 SNRIGPTGAQHLAKSATLTELDLSENRIGPEGAEALSLSTVLTTLNVSGNAIGEAGARAF 566
Query: 393 RSK 395
K
Sbjct: 567 AEK 569
>gi|83748568|ref|ZP_00945588.1| Leucine-rich repeat family protein [Ralstonia solanacearum UW551]
gi|83724776|gb|EAP71934.1| Leucine-rich repeat family protein [Ralstonia solanacearum UW551]
Length = 629
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 118/386 (30%), Positives = 181/386 (46%), Gaps = 10/386 (2%)
Query: 11 FNELVYSRCLTEVSLEAFR--DCALQDLCLGQY--PGVNDKWMDVIASQGSSLLSVDLSG 66
+ L R E++LEA + ++ L +G+ GV++ + ++A++ L S+ L+G
Sbjct: 143 YPALKSVRFKGELTLEALKALPPGVEHLEIGRSTGSGVSNAGLALLATR--PLKSLSLNG 200
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
++ G L C++L SL C I D L ++ SL N I G +A
Sbjct: 201 IEIDAEGARLLATCASLTSLSLTGC-SIGDRAATALAQSRSIASLDLSVN-MIGPDGARA 258
Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
AG LV L+L G + L L+SLN N I D+ + + T L L
Sbjct: 259 LAG-APLVSLNLHNNGIGDEGALALATSGTLKSLNAS-NNGIGDAGVLGFADNTVLTQLN 316
Query: 187 ISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE 246
++ + + +G L+ LT L+L + A L+ SL LN+ ++ DDG E
Sbjct: 317 LAGNMIGPAGARALRRNTSLTELDLSTNRLGDAGAQVLAGSRSLTSLNVRNNEIGDDGTE 376
Query: 247 KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 306
++ +LK LNL +N I + L G T L L+L +C I G L ++ L
Sbjct: 377 ALARNTTLKSLNLSYNRIGLQGAGALGGNTTLSELDLRACAIDPYGASALARNTSVASLH 436
Query: 307 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 366
L ++G SG R ++ + L ++LS I D + LAG SL SLNLD +I D G A
Sbjct: 437 LGSNRIGDSGARAIATIRTLTLLDLSRNNIHDAGAQVLAGNDSLMSLNLDDNEIGDDGTA 496
Query: 367 ALTSLTGLTHLDLFGARITDSGAAYL 392
AL LT L+L RI +GA +L
Sbjct: 497 ALAQHPRLTSLNLASNRIGPTGAQHL 522
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 101/340 (29%), Positives = 157/340 (46%), Gaps = 4/340 (1%)
Query: 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
G+ L+S++L + + D G + L L+SL+ + I D G+ + LT L+
Sbjct: 261 GAPLVSLNLHNNGIGDEGALALATSGTLKSLNASNN-GIGDAGVLGFADNTVLTQLNLA- 318
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
N I G +A +L +LDL G L G L SLN++ N I D +
Sbjct: 319 GNMIGPAGARALRRNTSLTELDLSTNRLGDAGAQVLAGSRSLTSLNVR-NNEIGDDGTEA 377
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
L+ T LKSL +S +++ G L G L+ L+L C + +L+ S+ L+L
Sbjct: 378 LARNTTLKSLNLSYNRIGLQGAGALGGNTTLSELDLRACAIDPYGASALARNTSVASLHL 437
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
++ D G + I +L +L+L N I D L G +L SLNLD IGD+G
Sbjct: 438 GSNRIGDSGARAIATIRTLTLLDLSRNNIHDAGAQVLAGNDSLMSLNLDDNEIGDDGTAA 497
Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355
L L L L+ ++G +G +HL+ L ++LS I L+ + L +LN+
Sbjct: 498 LAQHPRLTSLNLASNRIGPTGAQHLAKSATLTELDLSENRIGPEGAEALSLSTVLTTLNV 557
Query: 356 DARQITDTGLAALTSL-TGLTHLDLFGARITDSGAAYLRS 394
I + G A T LT LD R+ ++GA L +
Sbjct: 558 SGNAIGEAGARAFAEKSTSLTSLDARNNRMGEAGAKMLEA 597
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 98/363 (26%), Positives = 152/363 (41%), Gaps = 28/363 (7%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+SL S+ L+G + D L ++ SLD + + I G L G + L SL+ N
Sbjct: 215 ASLTSLSLTGCSIGDRAATALAQSRSIASLDLSVNM-IGPDGARALAG-APLVSLNLH-N 271
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N I +G A A L L+ G++ L LN+ N I + + L
Sbjct: 272 NGIGDEGALALATSGTLKSLNASNNGIGDAGVLGFADNTVLTQLNLA-GNMIGPAGARAL 330
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL- 235
T+L L +S +++ D+G L G + LT LN+ + ++L+ +L LNL
Sbjct: 331 RRNTSLTELDLSTNRLGDAGAQVLAGSRSLTSLNVRNNEIGDDGTEALARNTTLKSLNLS 390
Query: 236 -NR----------------------CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
NR C + G ++ S+ L+LG N I D +
Sbjct: 391 YNRIGLQGAGALGGNTTLSELDLRACAIDPYGASALARNTSVASLHLGSNRIGDSGARAI 450
Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 332
+ L L+L I D G L G +L L L D ++G G L+ L S+NL+
Sbjct: 451 ATIRTLTLLDLSRNNIHDAGAQVLAGNDSLMSLNLDDNEIGDDGTAALAQHPRLTSLNLA 510
Query: 333 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
I + LA ++L L+L +I G AL+ T LT L++ G I ++GA
Sbjct: 511 SNRIGPTGAQHLAKSATLTELDLSENRIGPEGAEALSLSTVLTTLNVSGNAIGEAGARAF 570
Query: 393 RSK 395
K
Sbjct: 571 AEK 573
>gi|326513166|dbj|BAK06823.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 627
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 115/422 (27%), Positives = 189/422 (44%), Gaps = 64/422 (15%)
Query: 25 LEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNL 83
LE FR ++Q++ L V+ +W+ + S L + L+ V S + L S L
Sbjct: 90 LEVFRH-SVQEIDLSGDIAVDAEWLAYLGS-FRYLGVLKLADCKKVDHSAIWPLSGMSML 147
Query: 84 QSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTR 143
+ LD + C +I+D G++H+ + +L L +T G+ + L L+ LDL
Sbjct: 148 KELDLSRCSKITDAGIKHIVSIDSLEKLHL-SETGLTDNGVMLISALKGLILLDLGGIHM 206
Query: 144 IHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD----SGIAY 199
L +L+ L +LE L++ W + ITD L T L+ L +S + VT + Y
Sbjct: 207 TDKALRSLQVLTQLEHLDV-WGSEITDEGASILEAFTGLRFLNVSWTHVTRLPHLPNMKY 265
Query: 200 LK------------------GLQKLT----------------------LLNLEGCPVTAA 219
L LQK T L++ GC + +
Sbjct: 266 LNMSNCTIYSICGGDSEVHIPLQKFTASAASFGDIDEVFSSIVASSFSFLDMSGC--SLS 323
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG-SLKVLNLGFNEITDECLVHLKG-LTN 277
L L + SL +L+++ +++DD E + IG L+ L+L IT + L L G + N
Sbjct: 324 NLYGLQKMKSLEHLDISLNRVTDDAVEYVANIGMKLRYLSLKNTGITSQALCILAGTVPN 383
Query: 278 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS-----------SGLRHLSGLTNL 326
L SL+L I D LV ++ + +L+ ++LS T + L L L L
Sbjct: 384 LASLSLAYTKIDDSALVYISMMPSLRVIDLSHTTIKGFTRVEANSEKIPSLPLLEHLIYL 443
Query: 327 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
ES+NL +SD + + +LK L L + ++D GL AL+S + L HL G+ +++
Sbjct: 444 ESLNLEDAPLSDEVIPPMTSFRALKYLYLKSDFLSDPGLHALSSASNLIHLGFCGSVLSN 503
Query: 387 SG 388
SG
Sbjct: 504 SG 505
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 74/130 (56%), Gaps = 2/130 (1%)
Query: 267 ECLVHLKGLTNLESLNLDSCGIGDEGLV-NLTGLCNLKCLELSD-TQVGSSGLRHLSGLT 324
E L +L L L L C D + L+G+ LK L+LS +++ +G++H+ +
Sbjct: 111 EWLAYLGSFRYLGVLKLADCKKVDHSAIWPLSGMSMLKELDLSRCSKITDAGIKHIVSID 170
Query: 325 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 384
+LE ++LS TG++D + ++ L L L+L +TD L +L LT L HLD++G+ I
Sbjct: 171 SLEKLHLSETGLTDNGVMLISALKGLILLDLGGIHMTDKALRSLQVLTQLEHLDVWGSEI 230
Query: 385 TDSGAAYLRS 394
TD GA+ L +
Sbjct: 231 TDEGASILEA 240
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 88/334 (26%), Positives = 146/334 (43%), Gaps = 46/334 (13%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L+ +DL G +TD L L+ + L+ LD + +I+D G L + L L+
Sbjct: 196 LILLDLGGIHMTDKALRSLQVLTQLEHLDV-WGSEITDEGASILEAFTGLRFLN------ 248
Query: 119 ITAQGMKAFAGLINLVKLDLERCT---------RIHGGLVNLKG-LMKLESLNIKWCNCI 168
++ + L N+ L++ CT +H L ++ + + +
Sbjct: 249 VSWTHVTRLPHLPNMKYLNMSNCTIYSICGGDSEVHIPLQKFTASAASFGDIDEVFSSIV 308
Query: 169 TDS----DMK-----PLSGLTNLKSLQ---ISCSKVTDSGIAYLKGL-QKLTLLNLEGCP 215
S DM L GL +KSL+ IS ++VTD + Y+ + KL L+L+
Sbjct: 309 ASSFSFLDMSGCSLSNLYGLQKMKSLEHLDISLNRVTDDAVEYVANIGMKLRYLSLKNTG 368
Query: 216 VTAACLDSLS-ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL------GFNEITD-- 266
+T+ L L+ + +L L+L ++ D S + SL+V++L GF +
Sbjct: 369 ITSQALCILAGTVPNLASLSLAYTKIDDSALVYISMMPSLRVIDLSHTTIKGFTRVEANS 428
Query: 267 ---ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 323
L L+ L LESLNL+ + DE + +T LK L L + GL LS
Sbjct: 429 EKIPSLPLLEHLIYLESLNLEDAPLSDEVIPPMTSFRALKYLYLKSDFLSDPGLHALSSA 488
Query: 324 TNLESINLSFTG--ISDGSLRKLAGLSSLKSLNL 355
+NL I+L F G +S+ L + + L L+L
Sbjct: 489 SNL--IHLGFCGSVLSNSGLLEFVPPAQLHVLDL 520
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 79/168 (47%), Gaps = 17/168 (10%)
Query: 155 MKLESLNIKWCNCITDSDMKPLSG-LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
MKL L++K IT + L+G + NL SL ++ +K+ DS + Y+ + L +++L
Sbjct: 357 MKLRYLSLK-NTGITSQALCILAGTVPNLASLSLAYTKIDDSALVYISMMPSLRVIDLSH 415
Query: 214 CPVT--------AACLDSLSALGSLFYL---NLNRCQLSDDGCEKFSKIGSLKVLNLGFN 262
+ + + SL L L YL NL LSD+ + +LK L L +
Sbjct: 416 TTIKGFTRVEANSEKIPSLPLLEHLIYLESLNLEDAPLSDEVIPPMTSFRALKYLYLKSD 475
Query: 263 EITDECLVHLKGLTNLESLNLDSCG--IGDEGLVNLTGLCNLKCLELS 308
++D L L +NL ++L CG + + GL+ L L+LS
Sbjct: 476 FLSDPGLHALSSASNL--IHLGFCGSVLSNSGLLEFVPPAQLHVLDLS 521
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 68/282 (24%), Positives = 122/282 (43%), Gaps = 37/282 (13%)
Query: 15 VYSRC----LTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVT 70
+YS C + L+ F A + +++ + ++AS S L D+SG +
Sbjct: 273 IYSICGGDSEVHIPLQKFTASA------ASFGDIDEVFSSIVASSFSFL---DMSGCSL- 322
Query: 71 DSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLS-NLTSLSFRRNNAITAQGMKAFAG 129
S L L+ +L+ LD + +++D +E++ + L LS + N IT+Q + AG
Sbjct: 323 -SNLYGLQKMKSLEHLDISLN-RVTDDAVEYVANIGMKLRYLSLK-NTGITSQALCILAG 379
Query: 130 LI-NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
+ NL L L LV + + L + D + G T +++ +
Sbjct: 380 TVPNLASLSLAYTKIDDSALVYISMMPSLR---------VIDLSHTTIKGFTRVEA---N 427
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 248
K+ + L+ L L LNLE P++ + +++ +L YL L LSD G
Sbjct: 428 SEKIP--SLPLLEHLIYLESLNLEDAPLSDEVIPPMTSFRALKYLYLKSDFLSDPGLHAL 485
Query: 249 SKIGSLKVLNLGF--NEITDECLVHLKGLTNLESLNLDSCGI 288
S +L ++LGF + +++ L+ L L+L C I
Sbjct: 486 SSASNL--IHLGFCGSVLSNSGLLEFVPPAQLHVLDLSGCWI 525
>gi|317420071|emb|CBN82107.1| Uncharacterized protein [Dicentrarchus labrax]
Length = 889
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 115/416 (27%), Positives = 191/416 (45%), Gaps = 47/416 (11%)
Query: 5 DISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDL 64
++++ + N + R L +LE F C LQ L YP ++ + + + ++L + L
Sbjct: 469 ELAELLLNHMSRERLLRPRTLELFFGCPLQKFVLNCYPYSTNELLRQLRA-FTALKHLSL 527
Query: 65 SGSD-VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
S +TDSGL + LQ L+ C +++D L+H+ GL +L LS + +T G
Sbjct: 528 VNSPLITDSGLSIFSSLAKLQYLNLASCSKLTDSCLQHITGLKSLCFLSLDQTK-VTDAG 586
Query: 124 MKAF--AGLINLVKLDLERCTRIHGGLVNLKG-LMKLESLNIKWCNCITDSDMKPLSGLT 180
M + + L +L L + LV L + +L L+IK D+ L+ L+
Sbjct: 587 MVLYLQSAPSCLSQLSLNQTAVTEASLVVLPTCVPQLRLLSIKQTKV---KDVSALARLS 643
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR--- 237
NL++L + + VT+S + +L L+ L+L G PV D AL + L L +
Sbjct: 644 NLQTLNLDVTGVTESSLEHLSSHPTLSSLSLAGIPVA----DGNQALQIISDLRLTQLTL 699
Query: 238 ----------------------------CQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
Q++D G + S + LK L+L ++TD L
Sbjct: 700 PGRHTVTDSGLSFLSRLSLLLELDLTDYTQVTDQGVSQLSTMTRLKKLSLSNTQVTDAGL 759
Query: 270 VHLKGLTNLESLNLDSCGIGDEGLVNL-TGLCNLKCLELSDTQVGSSGLRH-LSGLTNLE 327
L+GL L+ L LD + G+ +L T L +L+ L L+ TQVG + +R + L
Sbjct: 760 PSLRGLQELQELCLDRTAVTSRGVADLITCLPHLQVLGLASTQVGDTVVRRGVIRCNQLV 819
Query: 328 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 383
+NLS T I+D L+ L + L +NLD ++ G+A L S T ++ + R
Sbjct: 820 KLNLSRTRITDHGLKCLKHM-HLAQVNLDGTGVSLIGIANLLSFTNISSIRASNTR 874
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 79/264 (29%), Positives = 125/264 (47%), Gaps = 39/264 (14%)
Query: 166 NCI---TDSDMKPLSGLTNLKSLQISCSK-VTDSGIAYLKGLQKLTLLNLEGC-PVTAAC 220
NC T+ ++ L T LK L + S +TDSG++ L KL LNL C +T +C
Sbjct: 503 NCYPYSTNELLRQLRAFTALKHLSLVNSPLITDSGLSIFSSLAKLQYLNLASCSKLTDSC 562
Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKF--SKIGSLKVLNLGFNEITDECLVHLKG-LTN 277
L ++ L SL +L+L++ +++D G + S L L+L +T+ LV L +
Sbjct: 563 LQHITGLKSLCFLSLDQTKVTDAGMVLYLQSAPSCLSQLSLNQTAVTEASLVVLPTCVPQ 622
Query: 278 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 337
L L++ + D + L L NL+ L L T V S L HLS L S++L+ ++
Sbjct: 623 LRLLSIKQTKVKD--VSALARLSNLQTLNLDVTGVTESSLEHLSSHPTLSSLSLAGIPVA 680
Query: 338 DGSLRKLAGLSSLK--SLNLDAR--------------------------QITDTGLAALT 369
DG+ + L +S L+ L L R Q+TD G++ L+
Sbjct: 681 DGN-QALQIISDLRLTQLTLPGRHTVTDSGLSFLSRLSLLLELDLTDYTQVTDQGVSQLS 739
Query: 370 SLTGLTHLDLFGARITDSGAAYLR 393
++T L L L ++TD+G LR
Sbjct: 740 TMTRLKKLSLSNTQVTDAGLPSLR 763
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 80/276 (28%), Positives = 133/276 (48%), Gaps = 12/276 (4%)
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
++AF L +L ++ T GL L KL+ LN+ C+ +TDS ++ ++GL +L
Sbjct: 516 LRAFTALKHLSLVNSPLIT--DSGLSIFSSLAKLQYLNLASCSKLTDSCLQHITGLKSLC 573
Query: 184 SLQISCSKVTDSGIA-YLKGLQK-LTLLNLEGCPVTAACLDSLSA-LGSLFYLNLNRCQL 240
L + +KVTD+G+ YL+ L+ L+L VT A L L + L L++ + ++
Sbjct: 574 FLSLDQTKVTDAGMVLYLQSAPSCLSQLSLNQTAVTEASLVVLPTCVPQLRLLSIKQTKV 633
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
D +++ +L+ LNL +T+ L HL L SL+L + D G L +
Sbjct: 634 KD--VSALARLSNLQTLNLDVTGVTESSLEHLSSHPTLSSLSLAGIPVAD-GNQALQIIS 690
Query: 301 NLKCLELS----DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
+L+ +L+ T S LE +T ++D + +L+ ++ LK L+L
Sbjct: 691 DLRLTQLTLPGRHTVTDSGLSFLSRLSLLLELDLTDYTQVTDQGVSQLSTMTRLKKLSLS 750
Query: 357 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
Q+TD GL +L L L L L +T G A L
Sbjct: 751 NTQVTDAGLPSLRGLQELQELCLDRTAVTSRGVADL 786
>gi|168701675|ref|ZP_02733952.1| hypothetical protein GobsU_19277 [Gemmata obscuriglobus UQM 2246]
Length = 407
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 67/191 (35%), Positives = 111/191 (58%), Gaps = 8/191 (4%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGI--------AYLKGLQKLTLLNLEGCPVTAA 219
+TD+ +K L+ L L +L +S ++VTD+G+ GL+ LT L+L VT A
Sbjct: 46 VTDTGLKELAALKGLTTLDLSYTEVTDAGVKALAALKALTALGLKGLTTLDLTFTRVTDA 105
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+ +L+AL +L L+L+ ++D+G ++ + +G+L L LG +TD + L L L
Sbjct: 106 GVKALAALKALTTLDLSHTLVTDEGLKELAALGALNTLGLGGTSVTDAGVKELAALKGLT 165
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
+L+L S G+ D G L+GL L L +S T V +G++ L+ L NL + L+ TG++D
Sbjct: 166 ALDLGSMGVTDAGAKELSGLTGLTALGMSFTGVTDAGVKELAALKNLTHLELAATGVTDA 225
Query: 340 SLRKLAGLSSL 350
+++LA L SL
Sbjct: 226 GVKELAALKSL 236
Score = 84.3 bits (207), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 101/197 (51%), Gaps = 8/197 (4%)
Query: 204 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG--------SLK 255
+ +T ++L VT L L+AL L L+L+ +++D G + + + L
Sbjct: 34 RPVTKVSLSFTRVTDTGLKELAALKGLTTLDLSYTEVTDAGVKALAALKALTALGLKGLT 93
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 315
L+L F +TD + L L L +L+L + DEGL L L L L L T V +
Sbjct: 94 TLDLTFTRVTDAGVKALAALKALTTLDLSHTLVTDEGLKELAALGALNTLGLGGTSVTDA 153
Query: 316 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 375
G++ L+ L L +++L G++D ++L+GL+ L +L + +TD G+ L +L LT
Sbjct: 154 GVKELAALKGLTALDLGSMGVTDAGAKELSGLTGLTALGMSFTGVTDAGVKELAALKNLT 213
Query: 376 HLDLFGARITDSGAAYL 392
HL+L +TD+G L
Sbjct: 214 HLELAATGVTDAGVKEL 230
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/210 (32%), Positives = 104/210 (49%), Gaps = 17/210 (8%)
Query: 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLE-----------HLRG 104
G + V LS + VTD+GL L L +LD ++ +++D G++ L+G
Sbjct: 33 GRPVTKVSLSFTRVTDTGLKELAALKGLTTLDLSY-TEVTDAGVKALAALKALTALGLKG 91
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW 164
L+ L L+F R +T G+KA A L L LDL GL L L L +L +
Sbjct: 92 LTTL-DLTFTR---VTDAGVKALAALKALTTLDLSHTLVTDEGLKELAALGALNTLGLG- 146
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
+TD+ +K L+ L L +L + VTD+G L GL LT L + VT A + L
Sbjct: 147 GTSVTDAGVKELAALKGLTALDLGSMGVTDAGAKELSGLTGLTALGMSFTGVTDAGVKEL 206
Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSL 254
+AL +L +L L ++D G ++ + + SL
Sbjct: 207 AALKNLTHLELAATGVTDAGVKELAALKSL 236
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 100/196 (51%), Gaps = 16/196 (8%)
Query: 59 LLSVDLSGSDVTDSGL--------IHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTS 110
L ++DLS ++VTD+G+ + L +LD F +++D G++ L L LT+
Sbjct: 60 LTTLDLSYTEVTDAGVKALAALKALTALGLKGLTTLDLTF-TRVTDAGVKALAALKALTT 118
Query: 111 LSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD 170
L + +T +G+K A L L L L + G+ L L L +L++ +TD
Sbjct: 119 LDLS-HTLVTDEGLKELAALGALNTLGLGGTSVTDAGVKELAALKGLTALDLG-SMGVTD 176
Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
+ K LSGLT L +L +S + VTD+G+ L L+ LT L L VT A + L+AL SL
Sbjct: 177 AGAKELSGLTGLTALGMSFTGVTDAGVKELAALKNLTHLELAATGVTDAGVKELAALKSL 236
Query: 231 FYLNLNRCQLSDDGCE 246
CQ ++ GC
Sbjct: 237 VL-----CQANELGCH 247
>gi|290981666|ref|XP_002673551.1| predicted protein [Naegleria gruberi]
gi|284087135|gb|EFC40807.1| predicted protein [Naegleria gruberi]
Length = 438
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 92/337 (27%), Positives = 159/337 (47%), Gaps = 4/337 (1%)
Query: 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
G L S+++ + + + G+ +L +C L S + + IS G +L L LT+L R
Sbjct: 31 GIELTSIEIGYNRIGNEGVKYLSECKELTSANL-YGNNISAEGASYLTKLK-LTNLDIRT 88
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
N + A+G K L L L++ G L L +L +L I CN I + K
Sbjct: 89 N-ELGAEGAKFIGQLSQLKILNIGVNDICAEGAKYLVALNQLTNLGIN-CNRIGEEGAKS 146
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
+S + L +L IS + + ++G+ Y+ + LT L + + A + L L L++
Sbjct: 147 ISEMKQLTNLDISNNYIGETGVEYVSEMGNLTTLTIIENNLRAEGCKKIRKLKQLTRLSI 206
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
++ +G + S++ L L + N I +E ++ L NL L++ IG EG +
Sbjct: 207 YDNKIGAEGAKFISEMEQLMFLEINNNSIRNEGTEYISQLGNLTELDISHNEIGSEGAKH 266
Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355
++ L CL S ++ + +LS LT L + + + I D S++ + L SL L L
Sbjct: 267 ISQFKQLTCLRFSYNKINAESFEYLSTLTQLTDLRICSSSIGDDSIKSITNLKSLTILYL 326
Query: 356 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
+ I+D G ++ LT LT L + I+D G +L
Sbjct: 327 NGNNISDNGCKNISELTQLTDLSMALNNISDEGCKFL 363
Score = 74.7 bits (182), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 78/304 (25%), Positives = 142/304 (46%), Gaps = 18/304 (5%)
Query: 69 VTDSGLIHLKDCSNLQSLDF--NFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
+ + G + + L +LD N+ I + G+E++ + NLT+L+ NN + A+G K
Sbjct: 139 IGEEGAKSISEMKQLTNLDISNNY---IGETGVEYVSEMGNLTTLTIIENN-LRAEGCKK 194
Query: 127 FAGLINLVKLDL-ERCTRIHGG--LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
L L +L + + G + ++ LM LE N N I + + +S L NL
Sbjct: 195 IRKLKQLTRLSIYDNKIGAEGAKFISEMEQLMFLEINN----NSIRNEGTEYISQLGNLT 250
Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
L IS +++ G ++ ++LT L + A + LS L L L + + DD
Sbjct: 251 ELDISHNEIGSEGAKHISQFKQLTCLRFSYNKINAESFEYLSTLTQLTDLRICSSSIGDD 310
Query: 244 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 303
+ + + SL +L L N I+D ++ LT L L++ I DEG L+ L L
Sbjct: 311 SIKSITNLKSLTILYLNGNNISDNGCKNISELTQLTDLSMALNNISDEGCKFLSQLTQLT 370
Query: 304 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 363
L++S ++G+ G +++ + L+ + I ++R + + LK+L +D ++ T
Sbjct: 371 ELDVSYNRIGNIGAEYINEMKQLKHL-----AIQANNIRNESKIDQLKTLLIDKTKVEVT 425
Query: 364 GLAA 367
A
Sbjct: 426 NYKA 429
>gi|290977929|ref|XP_002671689.1| LRR_RI domain-containing protein [Naegleria gruberi]
gi|284085260|gb|EFC38945.1| LRR_RI domain-containing protein [Naegleria gruberi]
Length = 434
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 111/410 (27%), Positives = 189/410 (46%), Gaps = 48/410 (11%)
Query: 1 MLPRDISQQIFNELVYSRCLTE---VSLEAF-----RDCALQDLCLGQYPGVNDKWMDVI 52
+ P DI ++I L + L +S + F R A L GQ W+ I
Sbjct: 24 LFPDDICEEIMQWLAWKEVLLNCCLISKQWFTIAKSRYRASIQLTYGQ----EKLWLCFI 79
Query: 53 ASQGSSL-----LSVD---LSGSDVTDS--GLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
Q + + VD + GS DS I K NL+ L+ Q D G E +
Sbjct: 80 KEQQEGISRIFNIGVDSFRVVGSYFIDSINAEIISKSFPNLKRLEIGDNQQFGDCGAESI 139
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
+ LTSL+ + IT++G + F GL+N GL L N
Sbjct: 140 SKIKTLTSLNVL-DCGITSKGAE-FIGLLN--------------------GLTYLNIGN- 176
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
N I DS MK + L++L LQI +++T + ++ LT L++ PVT
Sbjct: 177 ---NKIMDSGMKFIGKLSSLNVLQIGSTEITSESFKLVGCMKGLTSLSIYSNPVTIEDAK 233
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282
S+S++ L LN++ +S +G + S + L L+L N IT+E L+ + + + L
Sbjct: 234 SISSIHGLKSLNISNTGISVEGLKYLSALTLLTNLSLAKNNITNEGLLSISQMKQITKLF 293
Query: 283 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 342
L I +G L+ + NL+ L +S T++ + G++H++ L N+ S+N+S ++D +L+
Sbjct: 294 LQHNVIDCDGAQLLSTMTNLRLLNISQTKITTEGIKHITSLKNITSLNISINQLNDEALK 353
Query: 343 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
++ ++ L +L+ ++T G ++ L LT L++ + GA YL
Sbjct: 354 LVSSMNQLTNLSTHNNKLTSEGAKHISQLNNLTELNISSNPVRIEGANYL 403
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 92/174 (52%), Gaps = 1/174 (0%)
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
N I+ +G+K + L L L L + + GL+++ + ++ L ++ N I +
Sbjct: 248 NTGISVEGLKYLSALTLLTNLSLAKNNITNEGLLSISQMKQITKLFLQ-HNVIDCDGAQL 306
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
LS +TNL+ L IS +K+T GI ++ L+ +T LN+ + L +S++ L L+
Sbjct: 307 LSTMTNLRLLNISQTKITTEGIKHITSLKNITSLNISINQLNDEALKLVSSMNQLTNLST 366
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 289
+ +L+ +G + S++ +L LN+ N + E +L +T L+ +N+ +C G
Sbjct: 367 HNNKLTSEGAKHISQLNNLTELNISSNPVRIEGANYLNQMTTLKIINVSNCRTG 420
>gi|329905907|ref|ZP_08274287.1| hypothetical protein IMCC9480_2692 [Oxalobacteraceae bacterium
IMCC9480]
gi|327547418|gb|EGF32242.1| hypothetical protein IMCC9480_2692 [Oxalobacteraceae bacterium
IMCC9480]
Length = 552
Score = 100 bits (250), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 115/362 (31%), Positives = 170/362 (46%), Gaps = 60/362 (16%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
S +TD+GL L + L+ LD C I D GL HL +++LT L+ R+ IT G++
Sbjct: 47 SKLTDAGLASLAPLTALKQLDLGHCTGIGDTGLAHLGNMASLTQLNVRQCTNITDAGLEQ 106
Query: 127 FAGLINLVKLDLERCTRI-HGGLVNLKGL-----------------------MKLESLNI 162
A L L +L+L C RI G+ +LK L +L LN+
Sbjct: 107 LANLPRLARLNLAGCHRITAAGIAHLKKLPLTYLDLSGCSGISNAAIAHLKAHQLTELNL 166
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLK-------------------- 201
C D L+ + L++L +S C+ T+SG+ +L
Sbjct: 167 SDCTGFGDEGFAHLAEVP-LQTLDLSGCTGFTNSGLRFLNKSTLTRLSLRNCTQLDFGAT 225
Query: 202 ----GLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLK 255
G Q L L+L GC + L +L L L +L+L R L+D G E +++ SL+
Sbjct: 226 FRLYGAQSLRHLDLAGCEGLDNTALTALQDL-PLEHLDLARNTFLNDTGLESLAEMTSLR 284
Query: 256 VLNL-GFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQV 312
LNL G ++TD L HL L L+ L L++C D GL L+ L L+ LEL D +
Sbjct: 285 YLNLSGGADMTDAALAHLAELPALQHLILNNCRRTTDAGLAQLSHL-PLETLELVDCVAL 343
Query: 313 GSSGLRHLSG-LTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALT 369
++ L L G L+ ++LS T +SD L LA +++L+ L+L R TD G AL
Sbjct: 344 TNTALARLPGAAATLQKLDLSGCTALSDAGLAHLADITTLRKLDLSWNRNFTDAGAVALR 403
Query: 370 SL 371
L
Sbjct: 404 EL 405
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 105/302 (34%), Positives = 157/302 (51%), Gaps = 23/302 (7%)
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIK 163
+ +LT+L+ N+ +T G+ + A L L +LDL CT I GL +L + L LN++
Sbjct: 35 IRHLTNLNLSNNSKLTDAGLASLAPLTALKQLDLGHCTGIGDTGLAHLGNMASLTQLNVR 94
Query: 164 WCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACL 221
C ITD+ ++ L+ L L L ++ C ++T +GIA+LK L LT L+L GC ++ A +
Sbjct: 95 QCTNITDAGLEQLANLPRLARLNLAGCHRITAAGIAHLKKL-PLTYLDLSGCSGISNAAI 153
Query: 222 DSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLE 279
L A L LNL+ C D+G +++ L+ L+L G T+ L L T L
Sbjct: 154 AHLKA-HQLTELNLSDCTGFGDEGFAHLAEV-PLQTLDLSGCTGFTNSGLRFLNKST-LT 210
Query: 280 SLNLDSCGIGDEGLV-NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF----- 333
L+L +C D G L G +L+ L+L+ G GL + + LT L+ + L
Sbjct: 211 RLSLRNCTQLDFGATFRLYGAQSLRHLDLA----GCEGLDN-TALTALQDLPLEHLDLAR 265
Query: 334 -TGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFG-ARITDSGAA 390
T ++D L LA ++SL+ LNL +TD LA L L L HL L R TD+G A
Sbjct: 266 NTFLNDTGLESLAEMTSLRYLNLSGGADMTDAALAHLAELPALQHLILNNCRRTTDAGLA 325
Query: 391 YL 392
L
Sbjct: 326 QL 327
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 90/326 (27%), Positives = 135/326 (41%), Gaps = 66/326 (20%)
Query: 56 GSSLLSVDLS-------------------------------------------------- 65
SL +DL+
Sbjct: 231 AQSLRHLDLAGCEGLDNTALTALQDLPLEHLDLARNTFLNDTGLESLAEMTSLRYLNLSG 290
Query: 66 GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMK 125
G+D+TD+ L HL + LQ L N C + +D GL L L L +L A+T +
Sbjct: 291 GADMTDAALAHLAELPALQHLILNNCRRTTDAGLAQLSHLP-LETLELVDCVALTNTALA 349
Query: 126 AFAG-LINLVKLDLERCTRIH-GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
G L KLDL CT + GL +L + L L++ W TD+ L L L
Sbjct: 350 RLPGAAATLQKLDLSGCTALSDAGLAHLADITTLRKLDLSWNRNFTDAGAVALRELP-LG 408
Query: 184 SLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQLS 241
L+++ +TD G+ L G+ L L L GC + + L L++ L +L+ C+L
Sbjct: 409 QLRLNGWIGLTDQGMTALSGM-PLQSLGLIGCDNIDGSGLAQLNSR-CLQKFDLSHCRLL 466
Query: 242 DDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLD-SCGIGDEGLVNLTGL 299
+D + + LK L+L + ITD L HL GL L L+L + G+ DEGL NL+G+
Sbjct: 467 NDDAMIYLRRLPLKELDLSWCGAITDAGLAHLTGL-QLTRLDLTYNSGVTDEGLKNLSGM 525
Query: 300 C-----NLKCLELSDTQVGSSGLRHL 320
L C +++ ++GL L
Sbjct: 526 PLQQLRVLGCHQVTPNGFWAAGLERL 551
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 77/269 (28%), Positives = 110/269 (40%), Gaps = 82/269 (30%)
Query: 20 LTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLK 78
L +L A +D L+ L L + +ND ++ +A +SL ++LSG +D+TD+ L HL
Sbjct: 245 LDNTALTALQDLPLEHLDLARNTFLNDTGLESLAEM-TSLRYLNLSGGADMTDAALAHLA 303
Query: 79 -----------------------------------DC---------------SNLQSLDF 88
DC + LQ LD
Sbjct: 304 ELPALQHLILNNCRRTTDAGLAQLSHLPLETLELVDCVALTNTALARLPGAAATLQKLDL 363
Query: 89 NFCIQISDGGLEHLRGLSNLTS--LSFRRNN----------------------AITAQGM 124
+ C +SD GL HL ++ L LS+ RN +T QGM
Sbjct: 364 SGCTALSDAGLAHLADITTLRKLDLSWNRNFTDAGAVALRELPLGQLRLNGWIGLTDQGM 423
Query: 125 KAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
A +G + L L L C I G GL L L+ ++ C + D M L L LK
Sbjct: 424 TALSG-MPLQSLGLIGCDNIDGSGLAQLNSRC-LQKFDLSHCRLLNDDAMIYLRRLP-LK 480
Query: 184 SLQIS-CSKVTDSGIAYLKGLQKLTLLNL 211
L +S C +TD+G+A+L GLQ LT L+L
Sbjct: 481 ELDLSWCGAITDAGLAHLTGLQ-LTRLDL 508
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 93/197 (47%), Gaps = 35/197 (17%)
Query: 13 ELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTD- 71
+L ++R T+ A R+ L L L + G+ D+ M ++ G L S+ L G D D
Sbjct: 387 DLSWNRNFTDAGAVALRELPLGQLRLNGWIGLTDQGMTALS--GMPLQSLGLIGCDNIDG 444
Query: 72 SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLI 131
SGL L + LQ D + C ++D + +LR L
Sbjct: 445 SGLAQL-NSRCLQKFDLSHCRLLNDDAMIYLRRLP------------------------- 478
Query: 132 NLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SC 189
L +LDL C I GL +L GL +L L++ + + +TD +K LSG+ L+ L++ C
Sbjct: 479 -LKELDLSWCGAITDAGLAHLTGL-QLTRLDLTYNSGVTDEGLKNLSGMP-LQQLRVLGC 535
Query: 190 SKVTDSGIAYLKGLQKL 206
+VT +G + GL++L
Sbjct: 536 HQVTPNGF-WAAGLERL 551
>gi|290996041|ref|XP_002680591.1| predicted protein [Naegleria gruberi]
gi|284094212|gb|EFC47847.1| predicted protein [Naegleria gruberi]
Length = 281
Score = 100 bits (250), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 69/220 (31%), Positives = 111/220 (50%)
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
+ LS L LK L I S + D G+ ++ L++LT L++ ++ LS L L +
Sbjct: 17 LNHLSELKQLKKLHIYDSYIGDEGVRFISELKQLTTLDIRNNGISEYGAKYLSELKQLTF 76
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
L +++ + G + S++ L +L + N I DE +L L L LN+ IGDEG
Sbjct: 77 LIIDKNNIGAKGSKYISELKQLTILIIDKNNIDDEGAKYLSELKQLTYLNIQDNRIGDEG 136
Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
+ L L L +++ Q+G+ G ++LS L +L +N+S I D + L L L
Sbjct: 137 SKYIGELKQLTDLYINNNQIGNEGAKYLSELKHLILLNISNNQIGDEGAKYLCELKQLMD 196
Query: 353 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
L++ I D G+ L+ L LTHLD+ +I D G Y+
Sbjct: 197 LDISCNDIGDEGIKYLSGLKQLTHLDISYNKIRDEGVKYI 236
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 131/252 (51%), Gaps = 3/252 (1%)
Query: 143 RIHGG--LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL 200
RI G L +L L +L+ L+I + + I D ++ +S L L +L I + +++ G YL
Sbjct: 10 RIKEGEALNHLSELKQLKKLHI-YDSYIGDEGVRFISELKQLTTLDIRNNGISEYGAKYL 68
Query: 201 KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG 260
L++LT L ++ + A +S L L L +++ + D+G + S++ L LN+
Sbjct: 69 SELKQLTFLIIDKNNIGAKGSKYISELKQLTILIIDKNNIDDEGAKYLSELKQLTYLNIQ 128
Query: 261 FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 320
N I DE ++ L L L +++ IG+EG L+ L +L L +S+ Q+G G ++L
Sbjct: 129 DNRIGDEGSKYIGELKQLTDLYINNNQIGNEGAKYLSELKHLILLNISNNQIGDEGAKYL 188
Query: 321 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 380
L L +++S I D ++ L+GL L L++ +I D G+ ++ L + +L +
Sbjct: 189 CELKQLMDLDISCNDIGDEGIKYLSGLKQLTHLDISYNKIRDEGVKYISELKEIMYLYIN 248
Query: 381 GARITDSGAAYL 392
I D G YL
Sbjct: 249 NNYIGDEGTKYL 260
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 77/267 (28%), Positives = 124/267 (46%), Gaps = 3/267 (1%)
Query: 72 SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLI 131
L HL + L+ L + I D G+ + L LT+L R NN I+ G K + L
Sbjct: 15 EALNHLSELKQLKKLHI-YDSYIGDEGVRFISELKQLTTLDIR-NNGISEYGAKYLSELK 72
Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 191
L L +++ G + L +L L I N I D K LS L L L I ++
Sbjct: 73 QLTFLIIDKNNIGAKGSKYISELKQLTILIID-KNNIDDEGAKYLSELKQLTYLNIQDNR 131
Query: 192 VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI 251
+ D G Y+ L++LT L + + LS L L LN++ Q+ D+G + ++
Sbjct: 132 IGDEGSKYIGELKQLTDLYINNNQIGNEGAKYLSELKHLILLNISNNQIGDEGAKYLCEL 191
Query: 252 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 311
L L++ N+I DE + +L GL L L++ I DEG+ ++ L + L +++
Sbjct: 192 KQLMDLDISCNDIGDEGIKYLSGLKQLTHLDISYNKIRDEGVKYISELKEIMYLYINNNY 251
Query: 312 VGSSGLRHLSGLTNLESINLSFTGISD 338
+G G ++LS + L+ N F D
Sbjct: 252 IGDEGTKYLSEMNQLKDHNKDFQYKED 278
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 74/270 (27%), Positives = 130/270 (48%), Gaps = 4/270 (1%)
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW 164
+ +LT L R + + + L L KL + G+ + L +L +L+I+
Sbjct: 1 MKSLTKLKIR---IKEGEALNHLSELKQLKKLHIYDSYIGDEGVRFISELKQLTTLDIR- 56
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
N I++ K LS L L L I + + G Y+ L++LT+L ++ + L
Sbjct: 57 NNGISEYGAKYLSELKQLTFLIIDKNNIGAKGSKYISELKQLTILIIDKNNIDDEGAKYL 116
Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284
S L L YLN+ ++ D+G + ++ L L + N+I +E +L L +L LN+
Sbjct: 117 SELKQLTYLNIQDNRIGDEGSKYIGELKQLTDLYINNNQIGNEGAKYLSELKHLILLNIS 176
Query: 285 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 344
+ IGDEG L L L L++S +G G+++LSGL L +++S+ I D ++ +
Sbjct: 177 NNQIGDEGAKYLCELKQLMDLDISCNDIGDEGIKYLSGLKQLTHLDISYNKIRDEGVKYI 236
Query: 345 AGLSSLKSLNLDARQITDTGLAALTSLTGL 374
+ L + L ++ I D G L+ + L
Sbjct: 237 SELKEIMYLYINNNYIGDEGTKYLSEMNQL 266
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 81/174 (46%), Gaps = 2/174 (1%)
Query: 94 ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
I D G ++L L LT L+ + +N I +G K L L L + + G L
Sbjct: 108 IDDEGAKYLSELKQLTYLNIQ-DNRIGDEGSKYIGELKQLTDLYINNNQIGNEGAKYLSE 166
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
L L LNI N I D K L L L L ISC+ + D GI YL GL++LT L++
Sbjct: 167 LKHLILLNIS-NNQIGDEGAKYLCELKQLMDLDISCNDIGDEGIKYLSGLKQLTHLDISY 225
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 267
+ + +S L + YL +N + D+G + S++ LK N F DE
Sbjct: 226 NKIRDEGVKYISELKEIMYLYINNNYIGDEGTKYLSEMNQLKDHNKDFQYKEDE 279
>gi|290977067|ref|XP_002671260.1| predicted protein [Naegleria gruberi]
gi|284084827|gb|EFC38516.1| predicted protein [Naegleria gruberi]
Length = 378
Score = 100 bits (250), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 91/314 (28%), Positives = 148/314 (47%), Gaps = 24/314 (7%)
Query: 82 NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC 141
NLQSLDF+ + LS+ N +T G+KA A L L K++ R
Sbjct: 3 NLQSLDFS----------------TTTNELSYNHNYIVT-NGLKAIAELKQLKKINFHRN 45
Query: 142 TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLK 201
GL + +L L+I CN I K +S L LK L I+ + + D G Y+
Sbjct: 46 QIGQNGLQTISQFNQLLCLDIS-CNGIGIEGAKAVSELNQLKELDITANDIGDIGAKYIS 104
Query: 202 GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 261
+++LT L + + + S+ L L LN++ + D+G + S + L L++
Sbjct: 105 QMKELTKLYVRYNDINSQGASSIGELHQLTKLNISYNNIGDEGMKVISGMKHLTKLSVHN 164
Query: 262 NEI---TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 318
N I + + + +K LTNL ++ IG EG+ ++ L L L++S Q+G+ G
Sbjct: 165 NHINVGSSQFISQMKQLTNL---SISENHIGIEGVETISQLSQLTRLKISSNQIGARGAI 221
Query: 319 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 378
+S L L +++ I+D L+ L L L L D QI + G+ ++ L LT LD
Sbjct: 222 LISKLDKLTKLSIGSNRINDEGLKSLCRLKHLTKLKADFNQIGNEGVKSIIQLKQLTFLD 281
Query: 379 LFGARITDSGAAYL 392
+ G I+ GA ++
Sbjct: 282 IGGNNISHKGAQFI 295
Score = 84.3 bits (207), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 82/326 (25%), Positives = 152/326 (46%), Gaps = 27/326 (8%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
SQ + LL +D+S + + G + + + L+ LD I D G +++ + LT L +
Sbjct: 56 SQFNQLLCLDISCNGIGIEGAKAVSELNQLKELDIT-ANDIGDIGAKYISQMKELTKL-Y 113
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
R N I +QG + L L KL NI + N I D M
Sbjct: 114 VRYNDINSQGASSIGELHQLTKL------------------------NISYNN-IGDEGM 148
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
K +SG+ +L L + + + ++ +++LT L++ + ++++S L L L
Sbjct: 149 KVISGMKHLTKLSVHNNHINVGSSQFISQMKQLTNLSISENHIGIEGVETISQLSQLTRL 208
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
++ Q+ G SK+ L L++G N I DE L L L +L L D IG+EG+
Sbjct: 209 KISSNQIGARGAILISKLDKLTKLSIGSNRINDEGLKSLCRLKHLTKLKADFNQIGNEGV 268
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
++ L L L++ + G + ++ L L ++ +S I + + ++ L+ L+ L
Sbjct: 269 KSIIQLKQLTFLDIGGNNISHKGAQFINQLKQLRTLYISENQIGNKGAKLISELTQLRIL 328
Query: 354 NLDARQITDTGLAALTSLTGLTHLDL 379
++ +++D G+ ++ + LT LDL
Sbjct: 329 HIRKNELSDEGVKSILLMKQLTELDL 354
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 59/256 (23%), Positives = 113/256 (44%), Gaps = 3/256 (1%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
SQ L + + +D+ G + + L L+ ++ I D G++ + G+ +LT LS
Sbjct: 104 SQMKELTKLYVRYNDINSQGASSIGELHQLTKLNISYN-NIGDEGMKVISGMKHLTKLSV 162
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
NN I + + + L L + G+ + L +L L I N I
Sbjct: 163 H-NNHINVGSSQFISQMKQLTNLSISENHIGIEGVETISQLSQLTRLKIS-SNQIGARGA 220
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
+S L L L I +++ D G+ L L+ LT L + + + S+ L L +L
Sbjct: 221 ILISKLDKLTKLSIGSNRINDEGLKSLCRLKHLTKLKADFNQIGNEGVKSIIQLKQLTFL 280
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
++ +S G + +++ L+ L + N+I ++ + LT L L++ + DEG+
Sbjct: 281 DIGGNNISHKGAQFINQLKQLRTLYISENQIGNKGAKLISELTQLRILHIRKNELSDEGV 340
Query: 294 VNLTGLCNLKCLELSD 309
++ + L L+L +
Sbjct: 341 KSILLMKQLTELDLRE 356
>gi|290984426|ref|XP_002674928.1| predicted protein [Naegleria gruberi]
gi|284088521|gb|EFC42184.1| predicted protein [Naegleria gruberi]
Length = 612
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 89/354 (25%), Positives = 164/354 (46%), Gaps = 12/354 (3%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGL--EH 101
++DK + I SQ L+ + +S ++++ G ++ + L SL IS+ G+ E
Sbjct: 244 IDDKVLQSI-SQLKKLIVLHISENEISIEGAKYISKLNQLTSL------YISESGIRSEQ 296
Query: 102 LRGLSNLTSLSF--RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 159
R +S L L++ N + +G K + L L + G + + +L
Sbjct: 297 ARYISELKQLTYLDVTKNYVREEGAKYIRNMKKLTTLLVSENYVCEQGAEYISEMTQLTK 356
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
L+I N I + + L L L I S G+ Y+ L+ LT+LN +
Sbjct: 357 LDIS-VNNINKKGVFHICKLKQLTELSILESHFDGEGLEYISELKNLTILNFPYSEMRGV 415
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+ +S L L LN+ ++SD+G + S++ LK L++ N I+ E +L L NL
Sbjct: 416 GVKYISQLNQLTCLNIPYNRISDEGAKYISELKQLKELSISDNSISSEGANYLTDLKNLT 475
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L + +G++G ++++ L L L++S + S G +HLS L NL + + + +
Sbjct: 476 KLVITGNNLGNDGAMHISELKKLTILDISHNSISSEGAKHLSDLKNLTELVIKGNNLGND 535
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
++ L L L++ I+D G A++ + LT L ++ I+ G ++R
Sbjct: 536 GAMSISELKQLTHLDVCDNNISDEGFKAISKMNQLTRLSIYENSISGEGVEFIR 589
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 92/352 (26%), Positives = 161/352 (45%), Gaps = 27/352 (7%)
Query: 66 GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMK 125
G + + ++ L SL+ + I D +E + L LTSL + N I ++G+K
Sbjct: 95 GVKIDSESVTYIGQLKQLTSLEIQ-GMDIDDEHVESMAELKQLTSL-YISGNYIGSEGVK 152
Query: 126 AFAGLIN-LVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
+ N L KL++ + G + L +L SL I + I D+ + LSGL +L +
Sbjct: 153 IISESFNKLTKLNISANYIDNVGAKYISQLKQLTSLEIACNDSIGDAGIIYLSGLEHLTN 212
Query: 185 LQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 244
L IS K+ G Y+ ++LT LN+ C + L S+S L L L+++ ++S +G
Sbjct: 213 LDISRIKIGSGGAQYIGKFEQLTCLNINTCSIDDKVLQSISQLKKLIVLHISENEISIEG 272
Query: 245 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 304
+ SK+ L L + + I E ++ L L L++ + +EG + + L
Sbjct: 273 AKYISKLNQLTSLYISESGIRSEQARYISELKQLTYLDVTKNYVREEGAKYIRNMKKLTT 332
Query: 305 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG------SLRKLAGLSSLKS------ 352
L +S+ V G ++S +T L +++S I+ L++L LS L+S
Sbjct: 333 LLVSENYVCEQGAEYISEMTQLTKLDISVNNINKKGVFHICKLKQLTELSILESHFDGEG 392
Query: 353 ------------LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
LN ++ G+ ++ L LT L++ RI+D GA Y+
Sbjct: 393 LEYISELKNLTILNFPYSEMRGVGVKYISQLNQLTCLNIPYNRISDEGAKYI 444
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 71/278 (25%), Positives = 130/278 (46%), Gaps = 31/278 (11%)
Query: 145 HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQ 204
H VN + L + +L IK + I + + +TNL + K+ + Y+ L+
Sbjct: 52 HSNDVNGQFLQNIANLEIKVLSNIYKK-LILMKSVTNLCIPYVVGVKIDSESVTYIGQLK 110
Query: 205 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC----EKFSKIGSLKVLNLG 260
+LT L ++G + ++S++ L L L ++ + +G E F+K+ L +
Sbjct: 111 QLTSLEIQGMDIDDEHVESMAELKQLTSLYISGNYIGSEGVKIISESFNKLTKLNISANY 170
Query: 261 FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 320
+ + + + LK LT+LE DS IGD G++ L+GL +L L++S ++GS G +++
Sbjct: 171 IDNVGAKYISQLKQLTSLEIACNDS--IGDAGIIYLSGLEHLTNLDISRIKIGSGGAQYI 228
Query: 321 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG------LAALTSL--- 371
L +N++ I D L+ ++ L L L++ +I+ G L LTSL
Sbjct: 229 GKFEQLTCLNINTCSIDDKVLQSISQLKKLIVLHISENEISIEGAKYISKLNQLTSLYIS 288
Query: 372 ---------------TGLTHLDLFGARITDSGAAYLRS 394
LT+LD+ + + GA Y+R+
Sbjct: 289 ESGIRSEQARYISELKQLTYLDVTKNYVREEGAKYIRN 326
>gi|46447466|ref|YP_008831.1| hypothetical protein pc1832 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46401107|emb|CAF24556.1| hypothetical protein pc1832 [Candidatus Protochlamydia amoebophila
UWE25]
Length = 456
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 89/232 (38%), Positives = 127/232 (54%), Gaps = 9/232 (3%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGC 214
++E+LN +TD+ + L NLK L + C TD+G+A+L L L L+L GC
Sbjct: 224 EIEALNFSNNADLTDAHLLALKNCKNLKVLDLQECWNFTDAGLAHLTPLTALQHLDLTGC 283
Query: 215 -PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG--FNEITDECLVH 271
VT L LS L +L +LNL C L+D G + +LK L+L +N +TD L H
Sbjct: 284 FRVTDTGLAHLSPLVALQHLNLIGCDLTDAGLVHLKPLIALKHLDLMRCWN-LTDAGLAH 342
Query: 272 LKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESI 329
L+ L L+ LNL +C I D GL +LT L LK L+L ++ +GL L L L+ +
Sbjct: 343 LRPLVALQHLNLTNCENITDVGLAHLTPLVALKHLDLMQCWKLTGNGLARLRSLVALQHL 402
Query: 330 NLS-FTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDL 379
NLS + ++D L L L +L+ L+L + ++TD GLA L THLDL
Sbjct: 403 NLSGCSYLTDAGLAHLRPLVALQHLDLANCYELTDAGLAHFKFLAATTHLDL 454
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 77/223 (34%), Positives = 118/223 (52%), Gaps = 4/223 (1%)
Query: 65 SGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM 124
+ +D+TD+ L+ LK+C NL+ LD C +D GL HL L+ L L +T G+
Sbjct: 232 NNADLTDAHLLALKNCKNLKVLDLQECWNFTDAGLAHLTPLTALQHLDLTGCFRVTDTGL 291
Query: 125 KAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
+ L+ L L+L C GLV+LK L+ L+ L++ C +TD+ + L L L+
Sbjct: 292 AHLSPLVALQHLNLIGCDLTDAGLVHLKPLIALKHLDLMRCWNLTDAGLAHLRPLVALQH 351
Query: 185 LQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQ-LS 241
L ++ C +TD G+A+L L L L+L C +T L L +L +L +LNL+ C L+
Sbjct: 352 LNLTNCENITDVGLAHLTPLVALKHLDLMQCWKLTGNGLARLRSLVALQHLNLSGCSYLT 411
Query: 242 DDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNL 283
D G + +L+ L+L E+TD L H K L L+L
Sbjct: 412 DAGLAHLRPLVALQHLDLANCYELTDAGLAHFKFLAATTHLDL 454
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/156 (37%), Positives = 90/156 (57%), Gaps = 2/156 (1%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
+L ++L G D+TD+GL+HLK L+ LD C ++D GL HLR L L L+
Sbjct: 299 ALQHLNLIGCDLTDAGLVHLKPLIALKHLDLMRCWNLTDAGLAHLRPLVALQHLNLTNCE 358
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
IT G+ L+ L LDL +C ++ G GL L+ L+ L+ LN+ C+ +TD+ + L
Sbjct: 359 NITDVGLAHLTPLVALKHLDLMQCWKLTGNGLARLRSLVALQHLNLSGCSYLTDAGLAHL 418
Query: 177 SGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNL 211
L L+ L ++ C ++TD+G+A+ K L T L+L
Sbjct: 419 RPLVALQHLDLANCYELTDAGLAHFKFLAATTHLDL 454
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 70/185 (37%), Positives = 100/185 (54%), Gaps = 6/185 (3%)
Query: 216 VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLK 273
+T A L +L +L L+L C +D G + + +L+ L+L G +TD L HL
Sbjct: 236 LTDAHLLALKNCKNLKVLDLQECWNFTDAGLAHLTPLTALQHLDLTGCFRVTDTGLAHLS 295
Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLS 332
L L+ LNL C + D GLV+L L LK L+L + +GL HL L L+ +NL+
Sbjct: 296 PLVALQHLNLIGCDLTDAGLVHLKPLIALKHLDLMRCWNLTDAGLAHLRPLVALQHLNLT 355
Query: 333 F-TGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFG-ARITDSGA 389
I+D L L L +LK L+L ++T GLA L SL L HL+L G + +TD+G
Sbjct: 356 NCENITDVGLAHLTPLVALKHLDLMQCWKLTGNGLARLRSLVALQHLNLSGCSYLTDAGL 415
Query: 390 AYLRS 394
A+LR
Sbjct: 416 AHLRP 420
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 58 SLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
+L ++LSG S +TD+GL HL+ LQ LD C +++D GL H + L+ T L R
Sbjct: 398 ALQHLNLSGCSYLTDAGLAHLRPLVALQHLDLANCYELTDAGLAHFKFLAATTHLDLR 455
>gi|254411467|ref|ZP_05025244.1| Leucine Rich Repeat domain protein [Coleofasciculus chthonoplastes
PCC 7420]
gi|196181968|gb|EDX76955.1| Leucine Rich Repeat domain protein [Coleofasciculus chthonoplastes
PCC 7420]
Length = 577
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 130/382 (34%), Positives = 190/382 (49%), Gaps = 66/382 (17%)
Query: 45 NDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDF--NFCIQISDGGLEHL 102
N++ +V S ++L + LS + +T+ ++L +NL+ L N I IS L
Sbjct: 211 NNQITEVSLSGLTNLTELYLSNNQITE---VNLSGLTNLRRLYLSTNQIIDIS-----PL 262
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE----RCTRIHGGLVNLKGLMKLE 158
GL+NLT L + N + + +GL NL +LDL+ + GL NL GL L
Sbjct: 263 SGLTNLTELDLKYNQI---KDVSPLSGLTNLTELDLKYNQIKDVSPLSGLTNLTGLY-LS 318
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT----------- 207
S IK D+ PLSGLTNL L +S +K+ D I+ L GL LT
Sbjct: 319 SNQIK--------DISPLSGLTNLTLLYLSDNKIKD--ISPLSGLINLTGLDLGSNKIKD 368
Query: 208 ------LLNLEGCPVTA---ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 258
L+NL G +++ + LS L +L + +L+ Q+++ + + L + N
Sbjct: 369 ISPLSGLINLTGLDLSSNKIKDISPLSGLTNLTWFSLDNNQITEVSLSGLTNLTELYLRN 428
Query: 259 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 318
N+ITD + L LTNL L L++ I D + L+GL NL L LS+ Q+
Sbjct: 429 ---NQITD--VSSLSELTNLTRLVLNNNQITD--VSPLSGLTNLTVLNLSNNQITD---V 478
Query: 319 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 378
LSGLTNL +NLS I+D S L+GL++L LNL + QITD ++ L+ LT LT L
Sbjct: 479 SLSGLTNLTVLNLSNNQITDVS--PLSGLTNLTGLNLISNQITD--VSILSGLTNLTVLI 534
Query: 379 LFGARITD----SGAAYLRSKF 396
L +I D SG LR +
Sbjct: 535 LSNNQIKDVSPLSGLTNLRRLY 556
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 118/343 (34%), Positives = 178/343 (51%), Gaps = 34/343 (9%)
Query: 45 NDKWMDVIASQG-SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR 103
N++ +DV G ++L ++L + +T+ L L + + L L N ++ +L
Sbjct: 189 NNQIIDVTPLSGLANLTELNLYNNQITEVSLSGLTNLTELY-LSNNQITEV------NLS 241
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 163
GL+NL L N I + +GL NL +LDL + +I + L GL L L++K
Sbjct: 242 GLTNLRRLYLSTNQII---DISPLSGLTNLTELDL-KYNQIKD-VSPLSGLTNLTELDLK 296
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
+ D+ PLSGLTNL L +S +++ D I+ L GL LTLL L + +
Sbjct: 297 YNQI---KDVSPLSGLTNLTGLYLSSNQIKD--ISPLSGLTNLTLLYLSDNKI--KDISP 349
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
LS L +L L+L ++ D S + +L L+L N+I D + L GLTNL +L
Sbjct: 350 LSGLINLTGLDLGSNKIKD--ISPLSGLINLTGLDLSSNKIKD--ISPLSGLTNLTWFSL 405
Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
D+ I + V+L+GL NL L L + Q+ + + LS LTNL + L+ I+D S
Sbjct: 406 DNNQITE---VSLSGLTNLTELYLRNNQI--TDVSSLSELTNLTRLVLNNNQITDVS--P 458
Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
L+GL++L LNL QITD L+ LT LT L+L +ITD
Sbjct: 459 LSGLTNLTVLNLSNNQITDVSLSG---LTNLTVLNLSNNQITD 498
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 110/310 (35%), Positives = 154/310 (49%), Gaps = 38/310 (12%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
QI D + L L+NLT L+ NN I + + + L NL +L+L +I + L
Sbjct: 103 QIKD--VTPLSELTNLTELNLY-NNQI--KDVTPLSELTNLTELNLYN-NQIKD-VTPLS 155
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
GL+ L L I + N ITD + PLSGLTNL L + +++ D + L GL LT LNL
Sbjct: 156 GLINLTRL-ILFSNQITD--ITPLSGLTNLTELSLDNNQIID--VTPLSGLANLTELNLY 210
Query: 213 GCPVTAACLDSLSALGSLF-------------YLNLNRCQLSDD---GCEKFSKIGSLKV 256
+T L L+ L L+ NL R LS + S + +L
Sbjct: 211 NNQITEVSLSGLTNLTELYLSNNQITEVNLSGLTNLRRLYLSTNQIIDISPLSGLTNLTE 270
Query: 257 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 316
L+L +N+I D + L GLTNL L+L I D + L+GL NL L LS Q+
Sbjct: 271 LDLKYNQIKD--VSPLSGLTNLTELDLKYNQIKD--VSPLSGLTNLTGLYLSSNQI--KD 324
Query: 317 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 376
+ LSGLTNL + LS I D + L+GL +L L+L + +I D ++ L+ L LT
Sbjct: 325 ISPLSGLTNLTLLYLSDNKIKD--ISPLSGLINLTGLDLGSNKIKD--ISPLSGLINLTG 380
Query: 377 LDLFGARITD 386
LDL +I D
Sbjct: 381 LDLSSNKIKD 390
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 82/236 (34%), Positives = 116/236 (49%), Gaps = 30/236 (12%)
Query: 62 VDLSGSDVTDSGLIHLKDCS------NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
++L+G D+ G +KD S NL LD + +I D + L GL+NLT S
Sbjct: 354 INLTGLDL---GSNKIKDISPLSGLINLTGLDLSSN-KIKD--ISPLSGLTNLTWFSLD- 406
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
NN IT + +GL NL +L L + + ++ L +L +L N +D+ P
Sbjct: 407 NNQITE---VSLSGLTNLTELYLR-----NNQITDVSSLSELTNLTRLVLNNNQITDVSP 458
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
LSGLTNL L +S +++TD L GL LT+LNL +T LS L +L LNL
Sbjct: 459 LSGLTNLTVLNLSNNQITD---VSLSGLTNLTVLNLSNNQITDVS--PLSGLTNLTGLNL 513
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
Q++D S + +L VL L N+I D + L GLTNL L L I +
Sbjct: 514 ISNQITD--VSILSGLTNLTVLILSNNQIKD--VSPLSGLTNLRRLYLGDNPIPQQ 565
>gi|290997674|ref|XP_002681406.1| predicted protein [Naegleria gruberi]
gi|284095030|gb|EFC48662.1| predicted protein [Naegleria gruberi]
Length = 426
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 87/317 (27%), Positives = 156/317 (49%), Gaps = 3/317 (0%)
Query: 73 GLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLIN 132
G + + L SLD + +I D G++ + + LTSLS NN I +G+K + +
Sbjct: 90 GFEFISEMKQLTSLDICYN-EIGDEGVKSICEMKQLTSLSIY-NNRIGDEGVKFISEMKQ 147
Query: 133 LVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKV 192
L LD+ G ++ + +L SL+I + N K +S + L SL IS +++
Sbjct: 148 LTSLDINNNRIGVQGAKSICEMKQLTSLSI-YNNQTGAVGAKFISEMKQLTSLDISVNEI 206
Query: 193 TDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG 252
G ++ +++LT LN+ + A + +S + L L++ ++ D+G + S++
Sbjct: 207 GVEGAKFISEMKQLTSLNICYNRIGAEGVKLISEMKQLTSLDIGGNEIGDEGAKFISEMK 266
Query: 253 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 312
L LN+ N+I DE + + L SL + IG EG ++ + L L +S Q+
Sbjct: 267 QLTSLNICENQIGDEGAKSISEMKQLTSLGAYNNEIGVEGTKLISEMKQLTSLNISKNQI 326
Query: 313 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 372
G G + +S + L S+++ + I D ++ ++ + LKSLN+ QI D G ++ +
Sbjct: 327 GDEGAKLISEMKQLASLDIYYNEIGDEGVKLISEMKQLKSLNISKNQIGDEGAKLISEMK 386
Query: 373 GLTHLDLFGARITDSGA 389
LT LD+ I D G
Sbjct: 387 QLTSLDIHFNEIGDEGV 403
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 85/331 (25%), Positives = 160/331 (48%), Gaps = 3/331 (0%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L S+D+ +++ D G+ + + L SL + +I D G++ + + LTSL
Sbjct: 95 SEMKQLTSLDICYNEIGDEGVKSICEMKQLTSLSI-YNNRIGDEGVKFISEMKQLTSLDI 153
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
NN I QG K+ + L L + G + + +L SL+I N I
Sbjct: 154 N-NNRIGVQGAKSICEMKQLTSLSIYNNQTGAVGAKFISEMKQLTSLDIS-VNEIGVEGA 211
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
K +S + L SL I +++ G+ + +++LT L++ G + +S + L L
Sbjct: 212 KFISEMKQLTSLNICYNRIGAEGVKLISEMKQLTSLDIGGNEIGDEGAKFISEMKQLTSL 271
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
N+ Q+ D+G + S++ L L NEI E + + L SLN+ IGDEG
Sbjct: 272 NICENQIGDEGAKSISEMKQLTSLGAYNNEIGVEGTKLISEMKQLTSLNISKNQIGDEGA 331
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
++ + L L++ ++G G++ +S + L+S+N+S I D + ++ + L SL
Sbjct: 332 KLISEMKQLASLDIYYNEIGDEGVKLISEMKQLKSLNISKNQIGDEGAKLISEMKQLTSL 391
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGARI 384
++ +I D G+ ++ + LT L ++ ++
Sbjct: 392 DIHFNEIGDEGVKLISEMKQLTSLSIYNQKM 422
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 103/381 (27%), Positives = 177/381 (46%), Gaps = 35/381 (9%)
Query: 35 DLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQI 94
D+ Q V K++ S+ L S+D+ + + G + L SLD QI
Sbjct: 8 DIGENQIGAVGAKFI----SEMKQLTSLDIIYNRIGAVGAKLISKMKQLTSLDIGGN-QI 62
Query: 95 SDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG--GLVNLK 152
D G + + + LTSLS NN I A G + + + L LD+ C G G+ ++
Sbjct: 63 GDEGAKFISEMKQLTSLSIY-NNLIGAVGFEFISEMKQLTSLDI--CYNEIGDEGVKSIC 119
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG---IAYLKGLQKLTLL 209
+ +L SL+I + N I D +K +S + L SL I+ +++ G I +K L L++
Sbjct: 120 EMKQLTSLSI-YNNRIGDEGVKFISEMKQLTSLDINNNRIGVQGAKSICEMKQLTSLSIY 178
Query: 210 NLEGCPVTAACLDSLSALGSL-FYLN------------------LNRC--QLSDDGCEKF 248
N + V A + + L SL +N LN C ++ +G +
Sbjct: 179 NNQTGAVGAKFISEMKQLTSLDISVNEIGVEGAKFISEMKQLTSLNICYNRIGAEGVKLI 238
Query: 249 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 308
S++ L L++G NEI DE + + L SLN+ IGDEG +++ + L L
Sbjct: 239 SEMKQLTSLDIGGNEIGDEGAKFISEMKQLTSLNICENQIGDEGAKSISEMKQLTSLGAY 298
Query: 309 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 368
+ ++G G + +S + L S+N+S I D + ++ + L SL++ +I D G+ +
Sbjct: 299 NNEIGVEGTKLISEMKQLTSLNISKNQIGDEGAKLISEMKQLASLDIYYNEIGDEGVKLI 358
Query: 369 TSLTGLTHLDLFGARITDSGA 389
+ + L L++ +I D GA
Sbjct: 359 SEMKQLKSLNISKNQIGDEGA 379
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 123/239 (51%), Gaps = 1/239 (0%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
+ +L SL+I + N I K +S + L SL I +++ D G ++ +++LT L++
Sbjct: 25 MKQLTSLDIIY-NRIGAVGAKLISKMKQLTSLDIGGNQIGDEGAKFISEMKQLTSLSIYN 83
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
+ A + +S + L L++ ++ D+G + ++ L L++ N I DE + +
Sbjct: 84 NLIGAVGFEFISEMKQLTSLDICYNEIGDEGVKSICEMKQLTSLSIYNNRIGDEGVKFIS 143
Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333
+ L SL++++ IG +G ++ + L L + + Q G+ G + +S + L S+++S
Sbjct: 144 EMKQLTSLDINNNRIGVQGAKSICEMKQLTSLSIYNNQTGAVGAKFISEMKQLTSLDISV 203
Query: 334 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
I + ++ + L SLN+ +I G+ ++ + LT LD+ G I D GA ++
Sbjct: 204 NEIGVEGAKFISEMKQLTSLNICYNRIGAEGVKLISEMKQLTSLDIGGNEIGDEGAKFI 262
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 64/243 (26%), Positives = 115/243 (47%), Gaps = 5/243 (2%)
Query: 73 GLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLIN 132
G + + L SLD + +I G + + + LTSL+ N I A+G+K + +
Sbjct: 186 GAKFISEMKQLTSLDISVN-EIGVEGAKFISEMKQLTSLNICYNR-IGAEGVKLISEMKQ 243
Query: 133 LVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC-NCITDSDMKPLSGLTNLKSLQISCSK 191
L LD+ G + + +L SLNI C N I D K +S + L SL ++
Sbjct: 244 LTSLDIGGNEIGDEGAKFISEMKQLTSLNI--CENQIGDEGAKSISEMKQLTSLGAYNNE 301
Query: 192 VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI 251
+ G + +++LT LN+ + +S + L L++ ++ D+G + S++
Sbjct: 302 IGVEGTKLISEMKQLTSLNISKNQIGDEGAKLISEMKQLASLDIYYNEIGDEGVKLISEM 361
Query: 252 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 311
LK LN+ N+I DE + + L SL++ IGDEG+ ++ + L L + + +
Sbjct: 362 KQLKSLNISKNQIGDEGAKLISEMKQLTSLDIHFNEIGDEGVKLISEMKQLTSLSIYNQK 421
Query: 312 VGS 314
+ S
Sbjct: 422 MKS 424
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 103/214 (48%)
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
+ LKSL I +++ G ++ +++LT L++ + A +S + L L++
Sbjct: 1 MKQLKSLDIGENQIGAVGAKFISEMKQLTSLDIIYNRIGAVGAKLISKMKQLTSLDIGGN 60
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
Q+ D+G + S++ L L++ N I + + L SL++ IGDEG+ ++
Sbjct: 61 QIGDEGAKFISEMKQLTSLSIYNNLIGAVGFEFISEMKQLTSLDICYNEIGDEGVKSICE 120
Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
+ L L + + ++G G++ +S + L S++++ I + + + L SL++
Sbjct: 121 MKQLTSLSIYNNRIGDEGVKFISEMKQLTSLDINNNRIGVQGAKSICEMKQLTSLSIYNN 180
Query: 359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
Q G ++ + LT LD+ I GA ++
Sbjct: 181 QTGAVGAKFISEMKQLTSLDISVNEIGVEGAKFI 214
>gi|406834160|ref|ZP_11093754.1| ribonuclease inhibitor [Schlesneria paludicola DSM 18645]
Length = 390
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 94/337 (27%), Positives = 157/337 (46%), Gaps = 58/337 (17%)
Query: 36 LCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQIS 95
+ L Q P +D + Q L+ + L + +TD+GL +L LQ LD + +IS
Sbjct: 95 ITLDQSPIGDDDL--AVLKQTPQLVGLSLRATKITDAGLKYLSSVPRLQKLDLSRT-KIS 151
Query: 96 DGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLM 155
D GLEHL+ L +NL +L + + G L GL
Sbjct: 152 DAGLEHLQTL-------------------------VNLCELTIAETSVTDAGTAKLAGLK 186
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215
L LN+ N +TD+ +K +S + NL +L + +TD G+A LK Q LT L+L+G P
Sbjct: 187 NLRVLNVSKTN-VTDTSLKVISEIPNLNTLILDGCNLTDVGLASLKDCQSLTFLSLDGIP 245
Query: 216 VTAACLDSLSALGSLFYLNL--NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
+T + L L + L YL L ++C DG F +G+LK
Sbjct: 246 LTGSFLKELKGI-PLEYLTLANSKC----DGTT-FKDVGTLK------------------ 281
Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333
NL+ L+L++C + D + ++ + +L+ L L +T++ + L + +L S++++
Sbjct: 282 ---NLKMLSLENCPVEDASIASIAAIASLETLSLDNTKITEQAIVELKDMPSLVSLSINS 338
Query: 334 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 370
T IS LR+L +LK + ++T + AL +
Sbjct: 339 TPISAEELRQLKATPNLKLVKAHNTKVTRGDVDALAA 375
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 77/307 (25%), Positives = 146/307 (47%), Gaps = 24/307 (7%)
Query: 87 DFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG 146
D++ I++ D + SL R + A+ A + L ++V D + + +G
Sbjct: 44 DYSPVIEVKD----------RVNSLGGRAHMAVAAPAV-----LQSIVGKDWDGWDQFYG 88
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
G ++++ + + + I D D+ L L L + +K+TD+G+ YL + +L
Sbjct: 89 G-------VEVDQITLDQ-SPIGDDDLAVLKQTPQLVGLSLRATKITDAGLKYLSSVPRL 140
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 266
L+L ++ A L+ L L +L L + ++D G K + + +L+VLN+ +TD
Sbjct: 141 QKLDLSRTKISDAGLEHLQTLVNLCELTIAETSVTDAGTAKLAGLKNLRVLNVSKTNVTD 200
Query: 267 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 326
L + + NL +L LD C + D GL +L +L L L + S L+ L G+ L
Sbjct: 201 TSLKVISEIPNLNTLILDGCNLTDVGLASLKDCQSLTFLSLDGIPLTGSFLKELKGIP-L 259
Query: 327 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
E + L+ + + + + L +LK L+L+ + D +A++ ++ L L L +IT+
Sbjct: 260 EYLTLANSKCDGTTFKDVGTLKNLKMLSLENCPVEDASIASIAAIASLETLSLDNTKITE 319
Query: 387 SGAAYLR 393
L+
Sbjct: 320 QAIVELK 326
Score = 41.2 bits (95), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 40/79 (50%)
Query: 316 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 375
G G ++ I L + I D L L L L+L A +ITD GL L+S+ L
Sbjct: 82 GWDQFYGGVEVDQITLDQSPIGDDDLAVLKQTPQLVGLSLRATKITDAGLKYLSSVPRLQ 141
Query: 376 HLDLFGARITDSGAAYLRS 394
LDL +I+D+G +L++
Sbjct: 142 KLDLSRTKISDAGLEHLQT 160
>gi|325109499|ref|YP_004270567.1| hypothetical protein Plabr_2946 [Planctomyces brasiliensis DSM
5305]
gi|324969767|gb|ADY60545.1| leucine-rich repeat cysteine-containing subtype [Planctomyces
brasiliensis DSM 5305]
Length = 381
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 94/291 (32%), Positives = 136/291 (46%), Gaps = 31/291 (10%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L S+ L S+ D LI + CS L++LD C +S+ GL HL GL L +L +
Sbjct: 100 LRSLLLRESNAGDDALIAVGKCSQLENLDLREC-PVSNAGLAHLVGLEKLKALRLSGQSG 158
Query: 119 ITAQ---GMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
T GM++ A L L L L+ GL LK L L L + + D D+K
Sbjct: 159 ATTVDDGGMESVAKLPQLKVLALDFLWISGDGLQQLKPLTDLRELYLA-STLVGDEDLKA 217
Query: 176 LSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNL-EGCPVTAACLDSLSALGSLFYL 233
LS L+ L++S S+++ GI + L KL L++ E ++ + SLS L L L
Sbjct: 218 LSQFPELRKLRVSKLSQLSGQGIQEISQLSKLEELDVSEDSSLSNDDISSLSKLTKLTKL 277
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
NL R +SD G E HL LT L LNLD+ + D GL
Sbjct: 278 NLWRVPISDAGVE------------------------HLAPLTKLTWLNLDNTQLSDAGL 313
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 344
L + LK L L TQ+ ++GL LS L +L+ + ++ T ++ + KL
Sbjct: 314 STLKEMKELKFLHLGSTQISNAGLPQLSELKSLDKLVVTRTAVNQEGVDKL 364
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 89/319 (27%), Positives = 141/319 (44%), Gaps = 31/319 (9%)
Query: 84 QSLDFNFC-IQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT 142
Q ++ +F ++S LE L L L SL R +NA + A L LDL C
Sbjct: 75 QIIEVDFIGKEVSPEALEALAKLPKLRSLLLRESNA-GDDALIAVGKCSQLENLDLRECP 133
Query: 143 RIHGGLVNLKGLMKLESLNIKW---CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAY 199
+ GL +L GL KL++L + + D M+ ++ L LK L + ++ G+
Sbjct: 134 VSNAGLAHLVGLEKLKALRLSGQSGATTVDDGGMESVAKLPQLKVLALDFLWISGDGLQQ 193
Query: 200 LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR-CQLSDDGCEKFSKIGSLKVLN 258
LK L L L L V L +LS L L +++ QLS G ++ S++ L+ L+
Sbjct: 194 LKPLTDLRELYLASTLVGDEDLKALSQFPELRKLRVSKLSQLSGQGIQEISQLSKLEELD 253
Query: 259 LGFNE-ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 317
+ + ++++ + L LT L LNL I D +G+
Sbjct: 254 VSEDSSLSNDDISSLSKLTKLTKLNLWRVPISD------------------------AGV 289
Query: 318 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 377
HL+ LT L +NL T +SD L L + LK L+L + QI++ GL L+ L L L
Sbjct: 290 EHLAPLTKLTWLNLDNTQLSDAGLSTLKEMKELKFLHLGSTQISNAGLPQLSELKSLDKL 349
Query: 378 DLFGARITDSGAAYLRSKF 396
+ + G L+ +
Sbjct: 350 VVTRTAVNQEGVDKLQPEL 368
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 85/299 (28%), Positives = 142/299 (47%), Gaps = 18/299 (6%)
Query: 22 EVSLEAFRDCA----LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHL 77
EVS EA A L+ L L + +D + V + S L ++DL V+++GL HL
Sbjct: 85 EVSPEALEALAKLPKLRSLLLRESNAGDDALIAV--GKCSQLENLDLRECPVSNAGLAHL 142
Query: 78 KDCSNLQSLDF---NFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134
L++L + + DGG+E + L L L+ I+ G++ L +L
Sbjct: 143 VGLEKLKALRLSGQSGATTVDDGGMESVAKLPQLKVLALDF-LWISGDGLQQLKPLTDLR 201
Query: 135 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISC-SKVT 193
+L L L L +L L + + ++ ++ +S L+ L+ L +S S ++
Sbjct: 202 ELYLASTLVGDEDLKALSQFPELRKLRVSKLSQLSGQGIQEISQLSKLEELDVSEDSSLS 261
Query: 194 DSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS 253
+ I+ L L KLT LNL P++ A ++ L+ L L +LNL+ QLSD G ++
Sbjct: 262 NDDISSLSKLTKLTKLNLWRVPISDAGVEHLAPLTKLTWLNLDNTQLSDAGLSTLKEMKE 321
Query: 254 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 312
LK L+LG +I++ L L L +L+ L + + EG+ L EL DT++
Sbjct: 322 LKFLHLGSTQISNAGLPQLSELKSLDKLVVTRTAVNQEGVDKLQP-------ELPDTEI 373
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 70/145 (48%), Gaps = 6/145 (4%)
Query: 248 FSKIGSLKVLNLGF--NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 305
K G +++ + F E++ E L L L L SL L GD+ L+ + L+ L
Sbjct: 68 MRKNGDDQIIEVDFIGKEVSPEALEALAKLPKLRSLLLRESNAGDDALIAVGKCSQLENL 127
Query: 306 ELSDTQVGSSGLRHLSGLTNLESINLS----FTGISDGSLRKLAGLSSLKSLNLDARQIT 361
+L + V ++GL HL GL L+++ LS T + DG + +A L LK L LD I+
Sbjct: 128 DLRECPVSNAGLAHLVGLEKLKALRLSGQSGATTVDDGGMESVAKLPQLKVLALDFLWIS 187
Query: 362 DTGLAALTSLTGLTHLDLFGARITD 386
GL L LT L L L + D
Sbjct: 188 GDGLQQLKPLTDLRELYLASTLVGD 212
>gi|443729605|gb|ELU15470.1| hypothetical protein CAPTEDRAFT_224593 [Capitella teleta]
Length = 858
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 122/393 (31%), Positives = 184/393 (46%), Gaps = 44/393 (11%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
LP ++++ + +L+ + L +L F LQ L L YP ++ + I + L
Sbjct: 444 LPANVAEGLLKQLMKEKLLRPKTLHPFIPSHLQTLLLDYYPYATNELLHEIRLH-NCLAH 502
Query: 62 VDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
+ L S +TD GL + L+ L+ C Q++D L +R L NL L + ++
Sbjct: 503 LSLKACSLITDRGLQDISSLKRLKVLNLAACTQLTDNCLPLVRELPNLQVLILE-STGVS 561
Query: 121 AQGMKAF--AGLINLVKLDLERCTRIHGGLVNL-KGLMKLESLNIKWCNCITDSDMKPLS 177
+GM+ L +LV LDL + T++ + NL K KL LN++ S++ LS
Sbjct: 562 DRGMQELFHQPLTSLVNLDLSK-TQVTHRIFNLAKNAPKLSHLNLE------QSEVASLS 614
Query: 178 GLTNL--KSLQISCSK-VTDS---------------------GIAYLKGLQKLTLLNLEG 213
G+ L +SL +S +K VTDS G L+ LQ L LL
Sbjct: 615 GVKELCLQSLNLSHTKIVTDSLLCLSGCDIRALNISNTPNIEGDLGLEYLQSLKLLQHLS 674
Query: 214 CPVTAACLD---SLSALGSLFYLNL-NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
P + D + L L+L N + DDG KI SL+ L L +ITD L
Sbjct: 675 LPSRLSLSDHGLQFTTAMPLVLLDLTNYLNVGDDGMRHIGKITSLRRLLLCNTKITDGGL 734
Query: 270 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH--LSGLTNLE 327
+ L+GL NLE ++LD I DEG + L+ L L++T + ++ L H L+ L
Sbjct: 735 LFLRGLVNLEEISLDRTAITDEGACVVEAFTRLQQLSLTETGISNAFLEHQSLNPCYLLS 794
Query: 328 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
+NLS T ISD +R L L +L LNLD +I
Sbjct: 795 KLNLSRTAISDKGVRCLR-LPNLTLLNLDHTRI 826
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 76/287 (26%), Positives = 126/287 (43%), Gaps = 62/287 (21%)
Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP 215
L L++K C+ ITD ++ +S L LK L ++ C+++TD+ + ++ L L +L LE
Sbjct: 500 LAHLSLKACSLITDRGLQDISSLKRLKVLNLAACTQLTDNCLPLVRELPNLQVLILESTG 559
Query: 216 VTAACLDSL--SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
V+ + L L SL L+L++ Q++ L LNL +E+ L
Sbjct: 560 VSDRGMQELFHQPLTSLVNLDLSKTQVTHRIFNLAKNAPKLSHLNLEQSEVAS-----LS 614
Query: 274 GLTNL--ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ-------------------- 311
G+ L +SLNL I + L+ L+G C+++ L +S+T
Sbjct: 615 GVKELCLQSLNLSHTKIVTDSLLCLSG-CDIRALNISNTPNIEGDLGLEYLQSLKLLQHL 673
Query: 312 -------------------------------VGSSGLRHLSGLTNLESINLSFTGISDGS 340
VG G+RH+ +T+L + L T I+DG
Sbjct: 674 SLPSRLSLSDHGLQFTTAMPLVLLDLTNYLNVGDDGMRHIGKITSLRRLLLCNTKITDGG 733
Query: 341 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 387
L L GL +L+ ++LD ITD G + + T L L L I+++
Sbjct: 734 LLFLRGLVNLEEISLDRTAITDEGACVVEAFTRLQQLSLTETGISNA 780
>gi|186701224|gb|ACC91251.1| leucine-rich repeat family protein [Arabidopsis halleri]
Length = 600
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 117/404 (28%), Positives = 174/404 (43%), Gaps = 113/404 (27%)
Query: 98 GLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGG-LVNLKGLMK 156
G +H ++ ++ R ++I A+ M G +NL+ L+L C RI+ L + GL
Sbjct: 58 GFKH-----SVENIDLRGESSINAEWMAYIGGFVNLISLNLSDCQRINSSTLWPITGLTS 112
Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
L L++ C +TD+ +K L ++NLK L IS + VT GI+ L L+KL+LL+L G PV
Sbjct: 113 LTELDLSRCWKVTDAGIKHLQSVSNLKKLWISQTGVTKVGISLLASLKKLSLLDLGGLPV 172
Query: 217 TAACLDSLSALGSLFYL-------------------NLNRCQLSDDGCEKFSKIGSLKVL 257
T L +L AL L YL NL+ LS + I L+ L
Sbjct: 173 TDHNLIALQALTKLEYLDIWGSNVTNQGAISILQFSNLSFLNLSWTSVTQTPNIPHLECL 232
Query: 258 NLGFNEITDECLVH---------------------------------------------- 271
++ I E H
Sbjct: 233 HMNMCTIVSEPKTHSSLASLKKLVLSGANFSAETEALSFTNKSSITYLDVSKTSLQNFSF 292
Query: 272 LKGLTNLESLNLDSCGIGDE--GLVNLTGLCNLKCLELSDTQVGSSGLRHLSG-LTNLES 328
L+ + NLE L+L S GD+ G V G NL+ L +S+T++ S+G+ +L+G + LE+
Sbjct: 293 LETMINLEHLDLSSTAFGDDSVGFVACVG-ENLRNLNVSETKITSAGVGNLAGHVPQLET 351
Query: 329 INLSFTGISD--------------------------------------GSLRKLAGLSSL 350
+LS T + D SL L L+SL
Sbjct: 352 FSLSQTFVDDLSILLISTMMPCVKALDLGMTSIRGFILQQSPQEEQAEPSLAALQSLTSL 411
Query: 351 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRS 394
K+L+L+ + DT L+AL+SLTGLTHL L +TDS +L S
Sbjct: 412 KTLSLEHPYLGDTALSALSSLTGLTHLSLRSTSLTDSTLHHLSS 455
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 101/435 (23%), Positives = 171/435 (39%), Gaps = 106/435 (24%)
Query: 25 LEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNL 83
LE F+ +++++ L +N +WM I +L+S++LS + S L + ++L
Sbjct: 56 LEGFKH-SVENIDLRGESSINAEWMAYIGG-FVNLISLNLSDCQRINSSTLWPITGLTSL 113
Query: 84 QSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN-----------------------AIT 120
LD + C +++D G++HL+ +SNL L + +T
Sbjct: 114 TELDLSRCWKVTDAGIKHLQSVSNLKKLWISQTGVTKVGISLLASLKKLSLLDLGGLPVT 173
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCN-------------- 166
+ A L L LD+ + G +++ L LN+ W +
Sbjct: 174 DHNLIALQALTKLEYLDIWGSNVTNQGAISILQFSNLSFLNLSWTSVTQTPNIPHLECLH 233
Query: 167 ---CITDSDMKPLSGLTNLKSLQIS----------CSKVTDSGIAYL----KGLQKL--- 206
C S+ K S L +LK L +S S S I YL LQ
Sbjct: 234 MNMCTIVSEPKTHSSLASLKKLVLSGANFSAETEALSFTNKSSITYLDVSKTSLQNFSFL 293
Query: 207 -TLLNLEGCPVTAACL--DSLSALG----SLFYLNLNRCQLSDDGC----------EKFS 249
T++NLE +++ DS+ + +L LN++ +++ G E FS
Sbjct: 294 ETMINLEHLDLSSTAFGDDSVGFVACVGENLRNLNVSETKITSAGVGNLAGHVPQLETFS 353
Query: 250 ----------------KIGSLKVLNLGFNEI-------------TDECLVHLKGLTNLES 280
+ +K L+LG I + L L+ LT+L++
Sbjct: 354 LSQTFVDDLSILLISTMMPCVKALDLGMTSIRGFILQQSPQEEQAEPSLAALQSLTSLKT 413
Query: 281 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 340
L+L+ +GD L L+ L L L L T + S L HLS L NL S+ + ++
Sbjct: 414 LSLEHPYLGDTALSALSSLTGLTHLSLRSTSLTDSTLHHLSSLPNLVSLGVRDAVLTSNG 473
Query: 341 LRKLAGLSSLKSLNL 355
L K L++L+L
Sbjct: 474 LEKFRPPKRLRTLDL 488
>gi|428317664|ref|YP_007115546.1| leucine-rich repeat-containing protein [Oscillatoria nigro-viridis
PCC 7112]
gi|428241344|gb|AFZ07130.1| leucine-rich repeat-containing protein [Oscillatoria nigro-viridis
PCC 7112]
Length = 782
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 118/334 (35%), Positives = 168/334 (50%), Gaps = 38/334 (11%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++L + +TD + L +NL L+ N QI+D + L GL+NLT LS N
Sbjct: 97 TNLTYLNLESNQITD--ITPLSALTNLTYLNLNHN-QITD--ITPLSGLTNLTILSLEYN 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHG--GLVNLKGLMKLESLNIKWCNCITDSDMK 174
G+ A L +L L + T I G GL NL + SLN N ITD +
Sbjct: 152 QITDITGLSALTNLTDLC-LGCNQITDITGLLGLTNLTRV----SLN---NNEITD--VT 201
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
PLS LTNL L I ++TD I+ L L LT L++ + + L +L+ L LF
Sbjct: 202 PLSALTNLTKLGIENQEITD--ISPLSALTNLTELSISDGIIDISPLSALTNLTELF--- 256
Query: 235 LNRCQLSD--DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
+S+ S + +L L++ +N+ E + L LTNL SL I D
Sbjct: 257 -----ISEGITDISPLSALTNLTKLSIIYNDTITE-ISPLSALTNLTSLYFLYTQITD-- 308
Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
+ L+ L NL L LSD Q+ + + LS LTNL +NLS I+D + L+ L++L
Sbjct: 309 ITALSALTNLTYLYLSDNQI--TDITALSALTNLTYLNLSNNQITD--IAALSALTNLTY 364
Query: 353 LNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
LNL QITD + AL++LT LT L L +ITD
Sbjct: 365 LNLSNNQITD--ITALSALTNLTELHLETNQITD 396
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 107/315 (33%), Positives = 158/315 (50%), Gaps = 50/315 (15%)
Query: 103 RGLSNLTSLSFRRN-NAITAQG-----MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMK 156
R ++N TSLS N A+ QG + + + L NL L+LE +I + L L
Sbjct: 63 RSITNFTSLSALTNLTALYLQGSQINDIASLSALTNLTYLNLE-SNQI-TDITPLSALTN 120
Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCP 215
L LN+ N ITD + PLSGLTNL L + +++TD +G++ L L L L GC
Sbjct: 121 LTYLNLN-HNQITD--ITPLSGLTNLTILSLEYNQITDITGLSALTNLTDLCL----GCN 173
Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 275
+ L L +L ++LN +++D S + +L L + EITD + L L
Sbjct: 174 -QITDITGLLGLTNLTRVSLNNNEITD--VTPLSALTNLTKLGIENQEITD--ISPLSAL 228
Query: 276 TNLESLNLDSCGIGD----------------EGLVN---LTGLCNLKCLEL--SDTQVGS 314
TNL L++ S GI D EG+ + L+ L NL L + +DT
Sbjct: 229 TNLTELSI-SDGIIDISPLSALTNLTELFISEGITDISPLSALTNLTKLSIIYNDT---I 284
Query: 315 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 374
+ + LS LTNL S+ +T I+D + L+ L++L L L QITD + AL++LT L
Sbjct: 285 TEISPLSALTNLTSLYFLYTQITD--ITALSALTNLTYLYLSDNQITD--ITALSALTNL 340
Query: 375 THLDLFGARITDSGA 389
T+L+L +ITD A
Sbjct: 341 TYLNLSNNQITDIAA 355
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 89/253 (35%), Positives = 126/253 (49%), Gaps = 27/253 (10%)
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCTRIHGGL 148
C QI+D + L GL+NLT +S NN IT + + L NL KL +E T I
Sbjct: 172 CNQITD--ITGLLGLTNLTRVSLN-NNEIT--DVTPLSALTNLTKLGIENQEITDISP-- 224
Query: 149 VNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTL 208
L L L L+I + I D + PLS LTNL L IS S ++ L L KL++
Sbjct: 225 --LSALTNLTELSIS--DGIID--ISPLSALTNLTELFISEGITDISPLSALTNLTKLSI 278
Query: 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 268
+ + L +L+ L SL++L Q++D S + +L L L N+ITD
Sbjct: 279 I-YNDTITEISPLSALTNLTSLYFL---YTQITD--ITALSALTNLTYLYLSDNQITD-- 330
Query: 269 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 328
+ L LTNL LNL + I D + L+ L NL L LS+ Q+ + + LS LTNL
Sbjct: 331 ITALSALTNLTYLNLSNNQITD--IAALSALTNLTYLNLSNNQI--TDITALSALTNLTE 386
Query: 329 INLSFTGISDGSL 341
++L I+D +L
Sbjct: 387 LHLETNQITDLNL 399
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 90/286 (31%), Positives = 130/286 (45%), Gaps = 55/286 (19%)
Query: 145 HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQ 204
H + N L L +L + +D+ LS LTNL L + +++TD I L L
Sbjct: 62 HRSITNFTSLSALTNLTALYLQGSQINDIASLSALTNLTYLNLESNQITD--ITPLSALT 119
Query: 205 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD--------------GCEKFSK 250
LT LNL +T + LS L +L L+L Q++D GC + +
Sbjct: 120 NLTYLNLNHNQITD--ITPLSGLTNLTILSLEYNQITDITGLSALTNLTDLCLGCNQITD 177
Query: 251 I------GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 304
I +L ++L NEITD + L LTNL L +++ I D + L+ L NL
Sbjct: 178 ITGLLGLTNLTRVSLNNNEITD--VTPLSALTNLTKLGIENQEITD--ISPLSALTNLTE 233
Query: 305 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS---------------------LRK 343
L +SD G + LS LTNL + +S GI+D S +
Sbjct: 234 LSISD---GIIDISPLSALTNLTELFIS-EGITDISPLSALTNLTKLSIIYNDTITEISP 289
Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 389
L+ L++L SL QITD + AL++LT LT+L L +ITD A
Sbjct: 290 LSALTNLTSLYFLYTQITD--ITALSALTNLTYLYLSDNQITDITA 333
>gi|290979162|ref|XP_002672303.1| predicted protein [Naegleria gruberi]
gi|284085879|gb|EFC39559.1| predicted protein [Naegleria gruberi]
Length = 371
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 93/332 (28%), Positives = 162/332 (48%), Gaps = 13/332 (3%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI---QISDGGLEHLRGLSNLTS 110
S+ L ++D+S +++ G+ H+ NL+ L F CI I D G +HL L LT
Sbjct: 47 SELKQLTNLDISYNNIGAEGVEHI---GNLKQLTF-LCIYHNNIGDEGAKHLSALKQLTY 102
Query: 111 LSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG--GLVNLKGLMKLESLNIKWCNCI 168
L NN I +G+K L L L++ C+ G G L L +L +LNI N I
Sbjct: 103 LYTAFNN-IGVEGVKYIIKLKQLSYLNI--CSNKVGDEGAKYLSELKQLTNLNISNSN-I 158
Query: 169 TDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG 228
++ ++ + L L IS + + G Y+ L++LT LN+ + +S +
Sbjct: 159 CAKGVEHITEMNQLTILNISTNNIGIEGAKYIGKLKQLTCLNIYYSNIDIEGAKYISEMK 218
Query: 229 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 288
L LN++ + +G + K+ L L + N I DE ++ L L +LN+ S I
Sbjct: 219 QLTDLNISYNNIGIEGAKYIGKLKQLTCLTIYNNYICDEGAKYISELNQLTNLNIYSNNI 278
Query: 289 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 348
GDEG ++ L L L++S Q+G+ G+++++ L L ++ S I D + ++ L
Sbjct: 279 GDEGAKYISELKQLTNLDISVNQIGAKGVKYIAELNQLTILSASLNNIRDEGAKYISELK 338
Query: 349 SLKSLNLDARQITDTGLAALTSLTGLTHLDLF 380
L +L++ + I+ G+ + LT L+++
Sbjct: 339 QLTNLDISSNNISIEGVKCFEEMKHLTVLEIY 370
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 80/295 (27%), Positives = 135/295 (45%), Gaps = 2/295 (0%)
Query: 98 GLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
G +++ L LT+L NN I A+G++ L L L + G +L L +L
Sbjct: 42 GAKYISELKQLTNLDISYNN-IGAEGVEHIGNLKQLTFLCIYHNNIGDEGAKHLSALKQL 100
Query: 158 ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
L + N I +K + L L L I +KV D G YL L++LT LN+ +
Sbjct: 101 TYLYTAFNN-IGVEGVKYIIKLKQLSYLNICSNKVGDEGAKYLSELKQLTNLNISNSNIC 159
Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 277
A ++ ++ + L LN++ + +G + K+ L LN+ ++ I E ++ +
Sbjct: 160 AKGVEHITEMNQLTILNISTNNIGIEGAKYIGKLKQLTCLNIYYSNIDIEGAKYISEMKQ 219
Query: 278 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 337
L LN+ IG EG + L L CL + + + G +++S L L ++N+ I
Sbjct: 220 LTDLNISYNNIGIEGAKYIGKLKQLTCLTIYNNYICDEGAKYISELNQLTNLNIYSNNIG 279
Query: 338 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
D + ++ L L +L++ QI G+ + L LT L I D GA Y+
Sbjct: 280 DEGAKYISELKQLTNLDISVNQIGAKGVKYIAELNQLTILSASLNNIRDEGAKYI 334
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 68/242 (28%), Positives = 114/242 (47%), Gaps = 4/242 (1%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
+K L KL S N N I + K +S L L L IS +K+ G Y+ L++LT L+
Sbjct: 1 MKSLTKLISCN----NNIGVEEAKYISELKQLTHLYISSNKIGVEGAKYISELKQLTNLD 56
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
+ + A ++ + L L +L + + D+G + S + L L FN I E +
Sbjct: 57 ISYNNIGAEGVEHIGNLKQLTFLCIYHNNIGDEGAKHLSALKQLTYLYTAFNNIGVEGVK 116
Query: 271 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 330
++ L L LN+ S +GDEG L+ L L L +S++ + + G+ H++ + L +N
Sbjct: 117 YIIKLKQLSYLNICSNKVGDEGAKYLSELKQLTNLNISNSNICAKGVEHITEMNQLTILN 176
Query: 331 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 390
+S I + + L L LN+ I G ++ + LT L++ I GA
Sbjct: 177 ISTNNIGIEGAKYIGKLKQLTCLNIYYSNIDIEGAKYISEMKQLTDLNISYNNIGIEGAK 236
Query: 391 YL 392
Y+
Sbjct: 237 YI 238
>gi|149918909|ref|ZP_01907395.1| hypothetical protein PPSIR1_16600 [Plesiocystis pacifica SIR-1]
gi|149820283|gb|EDM79700.1| hypothetical protein PPSIR1_16600 [Plesiocystis pacifica SIR-1]
Length = 1503
Score = 98.6 bits (244), Expect = 4e-18, Method: Composition-based stats.
Identities = 80/238 (33%), Positives = 119/238 (50%), Gaps = 12/238 (5%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGI---AYLKGLQKLTLLNLEGCPVTAACLDSL 224
I D+ ++ LS LT L+ L +S + +T +G+ +++ GL +L+L + +G A + L
Sbjct: 90 IDDAMVEVLSKLTGLQILDLSRNAITATGVESLSWIGGLTQLSLRSNQGVGDRGA--EIL 147
Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284
++L SL LNL+RC + G + K+G L+ L L N I DE V L L L L L
Sbjct: 148 ASLRSLEVLNLDRCGIGPIGAQALGKLGELRELVLSHNRILDEGAVALAKLAKLRELELS 207
Query: 285 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG-LTNLESINLSFTGISDGSLRK 343
C +GDEG L L L+ L L VG +G L L+ + L+ + + R
Sbjct: 208 VCQLGDEGAAALAKLRALEILRLGGNHVGPKAAAAFAGHLDKLQELELAVNQVGEEGARS 267
Query: 344 LAG-LSSLKSLNLDARQITDTGLAALTSLTG-----LTHLDLFGARITDSGAAYLRSK 395
L+G L L+ L+L +I D GL L G L HLDL IT + LR++
Sbjct: 268 LSGMLGHLRRLDLSYNKIGDAGLEGLLQPWGKRRVALEHLDLIENGITLVSPSVLRTR 325
Score = 66.2 bits (160), Expect = 2e-08, Method: Composition-based stats.
Identities = 75/262 (28%), Positives = 117/262 (44%), Gaps = 37/262 (14%)
Query: 92 IQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVN 150
+ I D +E L L+ L L RN AITA G+++ + + L +L L + G
Sbjct: 88 LDIDDAMVEVLSKLTGLQILDLSRN-AITATGVESLSWIGGLTQLSLRSNQGVGDRGAEI 146
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
L L LE LN+ C I + L L L+ L +S +++ D G
Sbjct: 147 LASLRSLEVLNLDRCG-IGPIGAQALGKLGELRELVLSHNRILDEGAV------------ 193
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
+L+ L L L L+ CQL D+G +K+ +L++L LG N + +
Sbjct: 194 ------------ALAKLAKLRELELSVCQLGDEGAAALAKLRALEILRLGGNHVGPKAAA 241
Query: 271 HLKG-LTNLESLNLDSCGIGDEGLVNLTG-LCNLKCLELSDTQVGSSGLRHL-------- 320
G L L+ L L +G+EG +L+G L +L+ L+LS ++G +GL L
Sbjct: 242 AFAGHLDKLQELELAVNQVGEEGARSLSGMLGHLRRLDLSYNKIGDAGLEGLLQPWGKRR 301
Query: 321 SGLTNLESINLSFTGISDGSLR 342
L +L+ I T +S LR
Sbjct: 302 VALEHLDLIENGITLVSPSVLR 323
Score = 50.4 bits (119), Expect = 0.002, Method: Composition-based stats.
Identities = 45/118 (38%), Positives = 56/118 (47%), Gaps = 5/118 (4%)
Query: 278 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS---GLTNLESINLSFT 334
LE L L + I D + L+ L L+ L+LS + ++G+ LS GLT L S
Sbjct: 80 LERLALVALDIDDAMVEVLSKLTGLQILDLSRNAITATGVESLSWIGGLTQLSL--RSNQ 137
Query: 335 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
G+ D LA L SL+ LNLD I G AL L L L L RI D GA L
Sbjct: 138 GVGDRGAEILASLRSLEVLNLDRCGIGPIGAQALGKLGELRELVLSHNRILDEGAVAL 195
>gi|83592173|ref|YP_425925.1| hypothetical protein Rru_A0837 [Rhodospirillum rubrum ATCC 11170]
gi|386348881|ref|YP_006047129.1| hypothetical protein F11_04310 [Rhodospirillum rubrum F11]
gi|83575087|gb|ABC21638.1| Leucine-rich repeat [Rhodospirillum rubrum ATCC 11170]
gi|346717317|gb|AEO47332.1| leucine-rich repeat-containing protein [Rhodospirillum rubrum F11]
Length = 1085
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 107/292 (36%), Positives = 158/292 (54%), Gaps = 26/292 (8%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
LS + VTD L L +LQSL + Q++D L L GL NL S++ +A
Sbjct: 101 LSYTAVTD--LTPLTGIKSLQSLILSET-QVTD--LTPLAGLKNLQSINL---SATQITD 152
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
+ AGL NL L L T L L GL L+ L + I D+ PL+GL +L+
Sbjct: 153 LAPLAGLENLQNLTLSYTTVTD--LAPLAGLENLQHLILLGTRVI---DLTPLAGLKSLQ 207
Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT-AACLDSLSALGSLFYLNLNRCQLSD 242
SL +S ++VT+ IA L GL+ L L+L VT A L L +L SL LNL+R ++D
Sbjct: 208 SLDLSGTRVTN--IAPLVGLKSLQSLDLRRTRVTDIAPLVGLKSLKSLQSLNLSRTPVTD 265
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
+ + +L+ L L + +TD L L GL NL++++L + D L L GL NL
Sbjct: 266 --LAPLAGLENLQNLTLSYTTVTD--LAPLAGLENLQNIDLGGTEVID--LAPLAGLENL 319
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 354
+ ++L T+V L L+GL NL+++ LS+T ++D L LAGL +L+S++
Sbjct: 320 QNIDLGGTEV--IDLAPLAGLENLQNLTLSYTTVTD--LAPLAGLENLQSID 367
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 114/323 (35%), Positives = 164/323 (50%), Gaps = 28/323 (8%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
+S VTD L L NLQ L ++ ++D L L G+ +L SL
Sbjct: 79 ISARLVTD--LTPLTGLENLQGLFLSYTA-VTD--LTPLTGIKSLQSLILSETQVT---D 130
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
+ AGL NL ++L T+I L L GL L++L + + T +D+ PL+GL NL+
Sbjct: 131 LTPLAGLKNLQSINLS-ATQI-TDLAPLAGLENLQNLTLSYT---TVTDLAPLAGLENLQ 185
Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
L + ++V D + L GL+ L L+L G VT + L L SL L+L R +++D
Sbjct: 186 HLILLGTRVID--LTPLAGLKSLQSLDLSGTRVT--NIAPLVGLKSLQSLDLRRTRVTDI 241
Query: 244 GC-EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
+ SL+ LNL +TD L L GL NL++L L + D L L GL NL
Sbjct: 242 APLVGLKSLKSLQSLNLSRTPVTD--LAPLAGLENLQNLTLSYTTVTD--LAPLAGLENL 297
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
+ ++L T+V L L+GL NL++I+L T + D L LAGL +L++L L +TD
Sbjct: 298 QNIDLGGTEV--IDLAPLAGLENLQNIDLGGTEVID--LAPLAGLENLQNLTLSYTTVTD 353
Query: 363 TGLAALTSLTGLTHLDLFGARIT 385
LA L L L +D G RIT
Sbjct: 354 --LAPLAGLENLQSIDCSGCRIT 374
Score = 87.8 bits (216), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 100/302 (33%), Positives = 157/302 (51%), Gaps = 32/302 (10%)
Query: 98 GLEHL----RGLSNLTSLSFR-----RNNAITAQ---GMKAFAGLINLVKLDLERCTRIH 145
GLE + R L+ LT+L R + I+A+ + GL NL L L
Sbjct: 49 GLERIPDSIRELAELTALRLTCWDRARGSFISARLVTDLTPLTGLENLQGLFLSYTAVTD 108
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK 205
L L G+ L+SL + +D+ PL+GL NL+S+ +S +++TD +A L GL+
Sbjct: 109 --LTPLTGIKSLQSLILSETQV---TDLTPLAGLKNLQSINLSATQITD--LAPLAGLEN 161
Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265
L L L VT L L+ L +L +L L ++ D + + SL+ L+L +T
Sbjct: 162 LQNLTLSYTTVTD--LAPLAGLENLQHLILLGTRVID--LTPLAGLKSLQSLDLSGTRVT 217
Query: 266 DECLVHLKGLTNLESLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT 324
+ + L GL +L+SL+L + D LV L L +L+ L LS T V + L L+GL
Sbjct: 218 N--IAPLVGLKSLQSLDLRRTRVTDIAPLVGLKSLKSLQSLNLSRTPV--TDLAPLAGLE 273
Query: 325 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 384
NL+++ LS+T ++D L LAGL +L++++L ++ D LA L L L ++DL G +
Sbjct: 274 NLQNLTLSYTTVTD--LAPLAGLENLQNIDLGGTEVID--LAPLAGLENLQNIDLGGTEV 329
Query: 385 TD 386
D
Sbjct: 330 ID 331
Score = 67.8 bits (164), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 73/225 (32%), Positives = 114/225 (50%), Gaps = 28/225 (12%)
Query: 58 SLLSVDLSGSDVTD-SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
SL S+DL + VTD + L+ LK +LQSL+ + ++D L L GL NL +L+
Sbjct: 227 SLQSLDLRRTRVTDIAPLVGLKSLKSLQSLNLSRT-PVTD--LAPLAGLENLQNLTL--- 280
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+ T + AGL NL +DL I L L GL L+++++ I D+ PL
Sbjct: 281 SYTTVTDLAPLAGLENLQNIDLGGTEVID--LAPLAGLENLQNIDLGGTEVI---DLAPL 335
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+GL NL++L +S + VTD +A L GL+ L ++ GC +T+ D L +L ++ +
Sbjct: 336 AGLENLQNLTLSYTTVTD--LAPLAGLENLQSIDCSGCRITSVP-DGLFDSPALRWVICS 392
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG-LTNLES 280
L+D E S+ G+ D CL H++ L +LE
Sbjct: 393 EGALADIPAEALSQGGA------------DNCLPHIRAHLRDLEQ 425
>gi|290978242|ref|XP_002671845.1| predicted protein [Naegleria gruberi]
gi|284085417|gb|EFC39101.1| predicted protein [Naegleria gruberi]
Length = 439
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 83/336 (24%), Positives = 156/336 (46%), Gaps = 27/336 (8%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
+L +D+S ++++D + H + ++L +L N C I G + L L+ LT L+ NN
Sbjct: 101 NLTRIDISDNEISDERVKHFGNLTHLTNLVIN-CNDIGVEGAKCLCQLNQLTRLNIG-NN 158
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
++ +G K + L NL KLD+ R NCI D + ++
Sbjct: 159 SLETEGAKYISELKNLTKLDIAR-------------------------NCIGDRGAQFIT 193
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
+ L SL ++ + + G ++ + +LT L++ + + +S L L L +
Sbjct: 194 EMKQLTSLNLNRNGIEYLGAKFISEMYQLTSLDISNNDIGSEGAKQISKLDQLTKLYIYD 253
Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
+ D+G S++ L L++ N+I E + L L +LN+ S IG+ G +++
Sbjct: 254 NNIGDEGAMHISEMKQLTNLDISRNDIDSEGAKSICELYQLTNLNICSNYIGETGAKHIS 313
Query: 298 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 357
+ NL LE+ ++GS G H+S + L + + I + + ++ + L L++
Sbjct: 314 EMNNLTILEIGSNEIGSEGAYHISRMHQLTRLMIFANDIGEKGAKHVSEMKQLTKLDIYD 373
Query: 358 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
I D G ++ + LT+LD+ I GA Y+R
Sbjct: 374 NNIGDEGTIHISEMKQLTYLDVSANNIGHEGAEYIR 409
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 75/289 (25%), Positives = 133/289 (46%), Gaps = 4/289 (1%)
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH-GGLVNLKGLMKLESLNIK 163
L NLT + +N I+ + +K F L +L L + C I G L L +L LNI
Sbjct: 99 LKNLTRIDIS-DNEISDERVKHFGNLTHLTNLVI-NCNDIGVEGAKCLCQLNQLTRLNI- 155
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
N + K +S L NL L I+ + + D G ++ +++LT LNL +
Sbjct: 156 GNNSLETEGAKYISELKNLTKLDIARNCIGDRGAQFITEMKQLTSLNLNRNGIEYLGAKF 215
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
+S + L L+++ + +G ++ SK+ L L + N I DE +H+ + L +L++
Sbjct: 216 ISEMYQLTSLDISNNDIGSEGAKQISKLDQLTKLYIYDNNIGDEGAMHISEMKQLTNLDI 275
Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
I EG ++ L L L + +G +G +H+S + NL + + I
Sbjct: 276 SRNDIDSEGAKSICELYQLTNLNICSNYIGETGAKHISEMNNLTILEIGSNEIGSEGAYH 335
Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
++ + L L + A I + G ++ + LT LD++ I D G ++
Sbjct: 336 ISRMHQLTRLMIFANDIGEKGAKHVSEMKQLTKLDIYDNNIGDEGTIHI 384
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 74/148 (50%)
Query: 245 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 304
C+ F + +L +++ NEI+DE + H LT+L +L ++ IG EG L L L
Sbjct: 93 CQIFECLKNLTRIDISDNEISDERVKHFGNLTHLTNLVINCNDIGVEGAKCLCQLNQLTR 152
Query: 305 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 364
L + + + + G +++S L NL ++++ I D + + + L SLNL+ I G
Sbjct: 153 LNIGNNSLETEGAKYISELKNLTKLDIARNCIGDRGAQFITEMKQLTSLNLNRNGIEYLG 212
Query: 365 LAALTSLTGLTHLDLFGARITDSGAAYL 392
++ + LT LD+ I GA +
Sbjct: 213 AKFISEMYQLTSLDISNNDIGSEGAKQI 240
Score = 45.4 bits (106), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 50/223 (22%), Positives = 91/223 (40%), Gaps = 31/223 (13%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L S+D+S +D+ G + L L + + I D G H+ + LT+L
Sbjct: 217 SEMYQLTSLDISNNDIGSEGAKQISKLDQLTKL-YIYDNNIGDEGAMHISEMKQLTNLDI 275
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHG--------------------------G 147
RN+ I ++G K+ L L L++ C+ G G
Sbjct: 276 SRND-IDSEGAKSICELYQLTNLNI--CSNYIGETGAKHISEMNNLTILEIGSNEIGSEG 332
Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 207
++ + +L L I + N I + K +S + L L I + + D G ++ +++LT
Sbjct: 333 AYHISRMHQLTRLMI-FANDIGEKGAKHVSEMKQLTKLDIYDNNIGDEGTIHISEMKQLT 391
Query: 208 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 250
L++ + + + L L +LN++ SD E K
Sbjct: 392 YLDVSANNIGHEGAEYIRKLNRLTFLNVHYNSFSDSESELIEK 434
>gi|42567079|ref|NP_194115.3| leucine-rich repeat-containing protein [Arabidopsis thaliana]
gi|20466546|gb|AAM20590.1| unknown protein [Arabidopsis thaliana]
gi|22136448|gb|AAM91302.1| unknown protein [Arabidopsis thaliana]
gi|51971383|dbj|BAD44356.1| putative protein [Arabidopsis thaliana]
gi|332659411|gb|AEE84811.1| leucine-rich repeat-containing protein [Arabidopsis thaliana]
Length = 597
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 115/390 (29%), Positives = 166/390 (42%), Gaps = 107/390 (27%)
Query: 111 LSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGG-LVNLKGLMKLESLNIKWCNCIT 169
+ R +++ A+ M G +NL+ L+L C RI+ L + GL L L++ C +T
Sbjct: 66 IDLRGKSSVNAEWMAYIGGFVNLITLNLSDCQRINSSTLWPITGLTSLTELDLSRCFKVT 125
Query: 170 DSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 229
D+ MK L + NLK L IS + VT+ GI+ L L+KL+LL+L G PVT L SL AL
Sbjct: 126 DAGMKHLQSVVNLKKLWISQTGVTEVGISLLASLKKLSLLDLGGLPVTDQNLISLQALTK 185
Query: 230 LFYL-------------------NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
L YL NL+ LS + I L+ L++ I E
Sbjct: 186 LEYLDIWGSNVTNQGAVSILKFSNLSFLNLSWTSITQTPNIPHLECLHMNTCTIVSEPKT 245
Query: 271 H----------------------------------------------LKGLTNLESLNLD 284
H L+ + NLE L+L
Sbjct: 246 HSSLASLKKLVLSGANFSAETESLSFTNKSCITYLDVSKTSLKNFSFLETMFNLEHLDLS 305
Query: 285 SCGIGDE--GLVNLTGLCNLKCLELSDTQVGSSGLRHLSG-LTNLESINLSFTGISD--- 338
S GD+ G V G NLK L +SDTQ+ SG+ +L+G + LE++++S T + D
Sbjct: 306 STAFGDDSVGFVACVG-ENLKNLNVSDTQITPSGVGNLAGHVPQLETLSMSQTFVDDLSI 364
Query: 339 ----------------------------------GSLRKLAGLSSLKSLNLDARQITDTG 364
SL L L+SL++L+L+ + D
Sbjct: 365 LLISTTMPCIKALDLGMNSTLGFYYLISPQEEKEKSLAALQSLTSLETLSLEHPYLGDKA 424
Query: 365 LAALTSLTGLTHLDLFGARITDSGAAYLRS 394
L+ L+SLTGLTHL L +TDS +L S
Sbjct: 425 LSGLSSLTGLTHLSLTSTSLTDSTLHHLSS 454
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 100/434 (23%), Positives = 173/434 (39%), Gaps = 105/434 (24%)
Query: 25 LEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNL 83
LE F+ +++++ L VN +WM I +L++++LS + S L + ++L
Sbjct: 56 LEGFK-YSVENIDLRGKSSVNAEWMAYIGG-FVNLITLNLSDCQRINSSTLWPITGLTSL 113
Query: 84 QSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN-----------------------AIT 120
LD + C +++D G++HL+ + NL L + +T
Sbjct: 114 TELDLSRCFKVTDAGMKHLQSVVNLKKLWISQTGVTEVGISLLASLKKLSLLDLGGLPVT 173
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCN-------------- 166
Q + + L L LD+ + G V++ L LN+ W +
Sbjct: 174 DQNLISLQALTKLEYLDIWGSNVTNQGAVSILKFSNLSFLNLSWTSITQTPNIPHLECLH 233
Query: 167 ---CITDSDMKPLSGLTNLKSLQIS-----------------CSKVTDSGIAYLKGLQKL 206
C S+ K S L +LK L +S C D LK L
Sbjct: 234 MNTCTIVSEPKTHSSLASLKKLVLSGANFSAETESLSFTNKSCITYLDVSKTSLKNFSFL 293
Query: 207 -TLLNLEGCPVTAACL--DSLSALG----SLFYLNLNRCQLSDDGC-------------- 245
T+ NLE +++ DS+ + +L LN++ Q++ G
Sbjct: 294 ETMFNLEHLDLSSTAFGDDSVGFVACVGENLKNLNVSDTQITPSGVGNLAGHVPQLETLS 353
Query: 246 --EKF----------SKIGSLKVLNLGFN------------EITDECLVHLKGLTNLESL 281
+ F + + +K L+LG N E ++ L L+ LT+LE+L
Sbjct: 354 MSQTFVDDLSILLISTTMPCIKALDLGMNSTLGFYYLISPQEEKEKSLAALQSLTSLETL 413
Query: 282 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 341
+L+ +GD+ L L+ L L L L+ T + S L HLS L NL S+ + ++ L
Sbjct: 414 SLEHPYLGDKALSGLSSLTGLTHLSLTSTSLTDSTLHHLSSLPNLVSLGVRDGVLTSNGL 473
Query: 342 RKLAGLSSLKSLNL 355
K + L++L+L
Sbjct: 474 EKFRPPNRLRTLDL 487
>gi|255523038|ref|ZP_05390010.1| leucine-rich repeat protein [Clostridium carboxidivorans P7]
gi|255513153|gb|EET89421.1| leucine-rich repeat protein [Clostridium carboxidivorans P7]
Length = 421
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 88/241 (36%), Positives = 130/241 (53%), Gaps = 22/241 (9%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
++GL+ L+SL + +C D+ PL GLTNLK L + +TD I+ LKGL L L
Sbjct: 186 IEGLVNLQSLTLTYCQI---EDISPLKGLTNLKELMLYDDNITD--ISPLKGLTNLEFLE 240
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
L G +T + SL L L ++L ++ D ++ +L+ LNL +N+ITD +
Sbjct: 241 LYGNQITD--IPSLEGLTKLKDIDLGNNKIHD--ITLLRELSNLQELNLVYNKITD--IS 294
Query: 271 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 330
LK LTNL SL+LD+ I D + L L NLK L L ++ + + L GLTNL S+
Sbjct: 295 SLKELTNLNSLDLDNNNISD--ISPLEKLSNLKSLSLGSNKI--TDISSLKGLTNLNSLV 350
Query: 331 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 390
L I+D S L GL++L LNL + +I+D ++ L GLT+L + T +
Sbjct: 351 LDDNNITDIS--PLKGLTNLNFLNLGSNKISD-----ISPLEGLTNLSTLWLKDTPTNEV 403
Query: 391 Y 391
Y
Sbjct: 404 Y 404
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 93/269 (34%), Positives = 131/269 (48%), Gaps = 21/269 (7%)
Query: 79 DCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL 138
D N+ L C SD ++++ G+ L +L + + GL NL +L L
Sbjct: 160 DVENITELMEQNCGIKSDNTIKYINGIEGLVNLQSLTLTYCQIEDISPLKGLTNLKELML 219
Query: 139 --ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG 196
+ T I LKGL LE L + + N ITD + L GLT LK + + +K+ D
Sbjct: 220 YDDNITDISP----LKGLTNLEFLEL-YGNQITD--IPSLEGLTKLKDIDLGNNKIHD-- 270
Query: 197 IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 256
I L+ L L LNL +T + SL L +L L+L+ +SD K+ +LK
Sbjct: 271 ITLLRELSNLQELNLVYNKITD--ISSLKELTNLNSLDLDNNNISD--ISPLEKLSNLKS 326
Query: 257 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 316
L+LG N+ITD + LKGLTNL SL LD I D + L GL NL L L ++ S
Sbjct: 327 LSLGSNKITD--ISSLKGLTNLNSLVLDDNNITD--ISPLKGLTNLNFLNLGSNKI--SD 380
Query: 317 LRHLSGLTNLESINLSFTGISDGSLRKLA 345
+ L GLTNL ++ L T ++ KL
Sbjct: 381 ISPLEGLTNLSTLWLKDTPTNEVYKEKLK 409
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 71/205 (34%), Positives = 109/205 (53%), Gaps = 17/205 (8%)
Query: 185 LQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 244
++ +C +D+ I Y+ G++ L+NL+ +T ++ +S L L NL L DD
Sbjct: 168 MEQNCGIKSDNTIKYINGIE--GLVNLQSLTLTYCQIEDISPLKGL--TNLKELMLYDDN 223
Query: 245 CEKFSKIG---SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN 301
S + +L+ L L N+ITD + L+GLT L+ ++L + I D L L L N
Sbjct: 224 ITDISPLKGLTNLEFLELYGNQITD--IPSLEGLTKLKDIDLGNNKIHDITL--LRELSN 279
Query: 302 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 361
L+ L L ++ + + L LTNL S++L ISD S L LS+LKSL+L + +IT
Sbjct: 280 LQELNLVYNKI--TDISSLKELTNLNSLDLDNNNISDIS--PLEKLSNLKSLSLGSNKIT 335
Query: 362 DTGLAALTSLTGLTHLDLFGARITD 386
D +++L LT L L L ITD
Sbjct: 336 D--ISSLKGLTNLNSLVLDDNNITD 358
Score = 45.4 bits (106), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 68/147 (46%), Gaps = 12/147 (8%)
Query: 246 EKFSKIGSLKVLNLGFNEITDECLVHLKGL------TNLESLNLDSCGIGDEGLVNLTGL 299
EK +I K N E +++ +V + ++ D + + N+T L
Sbjct: 108 EKNKQIKEGKTFNFKIKETSEKPIVFKDSVFERLIRNKIQVNKPDWETLNKSDVENITEL 167
Query: 300 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 359
C SD + + + GL NL+S+ L++ I D S L GL++LK L L
Sbjct: 168 MEQNCGIKSDNTIKY--INGIEGLVNLQSLTLTYCQIEDIS--PLKGLTNLKELMLYDDN 223
Query: 360 ITDTGLAALTSLTGLTHLDLFGARITD 386
ITD ++ L LT L L+L+G +ITD
Sbjct: 224 ITD--ISPLKGLTNLEFLELYGNQITD 248
>gi|320165727|gb|EFW42626.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 553
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 94/301 (31%), Positives = 141/301 (46%), Gaps = 5/301 (1%)
Query: 85 SLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI 144
SL N IS GL+ LT+L F NN + + A AGL L L L+R
Sbjct: 60 SLQGNLLTSISANAFT---GLTALTTL-FLENNQLPSISANALAGLTALQYLSLQRNQLT 115
Query: 145 HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQ 204
GL L LN+ + N L+GLT +++L + + +T L
Sbjct: 116 SISANTFTGLTALTGLNLDF-NQFASISADTLAGLTTMRTLSLGSNGITSISANAFTSLT 174
Query: 205 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 264
LT+L+L + + D+L+ L ++ L+L R QL+ F+ + +L L+L +NE+
Sbjct: 175 ALTVLDLSYNELPSISADALTGLTAMRTLSLQRNQLTSISANTFTGLTALTGLDLSYNEL 234
Query: 265 TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT 324
L GLT L+ L+L++ I TGL L L L+ Q+ + L+GLT
Sbjct: 235 PSISANALTGLTALQYLSLNNNRITRISANTFTGLTALTTLYLNYNQLPNISANALTGLT 294
Query: 325 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 384
L S++L+ I+ AGL++L SL L Q++ ALT LT L +L L RI
Sbjct: 295 ALRSLSLTQNNITTIHANAFAGLTALASLVLVQNQLSSISADALTGLTALQYLSLNNNRI 354
Query: 385 T 385
T
Sbjct: 355 T 355
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 117/375 (31%), Positives = 169/375 (45%), Gaps = 14/375 (3%)
Query: 20 LTEVSLEAFRD-CALQDLCL--GQYPGVN-DKWMDVIASQGSSLLSVDLSG-SDVTDSGL 74
LT +S AF AL L L Q P ++ + + A Q SL L+ S T +GL
Sbjct: 66 LTSISANAFTGLTALTTLFLENNQLPSISANALAGLTALQYLSLQRNQLTSISANTFTGL 125
Query: 75 IHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134
L + LDFN IS + L GL+ + +LS N IT+ AF L L
Sbjct: 126 TALTGLN----LDFNQFASISA---DTLAGLTTMRTLSLGSN-GITSISANAFTSLTALT 177
Query: 135 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 194
LDL L GL + +L+++ N +T +GLT L L +S +++
Sbjct: 178 VLDLSYNELPSISADALTGLTAMRTLSLQR-NQLTSISANTFTGLTALTGLDLSYNELPS 236
Query: 195 SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL 254
L GL L L+L +T ++ + L +L L LN QL + + + +L
Sbjct: 237 ISANALTGLTALQYLSLNNNRITRISANTFTGLTALTTLYLNYNQLPNISANALTGLTAL 296
Query: 255 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 314
+ L+L N IT GLT L SL L + LTGL L+ L L++ ++
Sbjct: 297 RSLSLTQNNITTIHANAFAGLTALASLVLVQNQLSSISADALTGLTALQYLSLNNNRITR 356
Query: 315 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 374
+GLT L + LS+ + S LAGL++L+ L+L+ QIT AA LT L
Sbjct: 357 ISANAFTGLTALTVLYLSYNELPSISANALAGLTALQYLSLNNNQITSIAAAAFAGLTAL 416
Query: 375 THLDLFGARITDSGA 389
THL L +IT A
Sbjct: 417 THLPLDNNQITSISA 431
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 91/320 (28%), Positives = 142/320 (44%), Gaps = 33/320 (10%)
Query: 86 LDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE------ 139
L +N IS + L GL+ + +LS +RN +T+ F GL L LDL
Sbjct: 181 LSYNELPSISA---DALTGLTAMRTLSLQRNQ-LTSISANTFTGLTALTGLDLSYNELPS 236
Query: 140 --------------------RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGL 179
R TRI GL L +L + + N + + L+GL
Sbjct: 237 ISANALTGLTALQYLSLNNNRITRISAN--TFTGLTALTTLYLNY-NQLPNISANALTGL 293
Query: 180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 239
T L+SL ++ + +T GL L L L +++ D+L+ L +L YL+LN +
Sbjct: 294 TALRSLSLTQNNITTIHANAFAGLTALASLVLVQNQLSSISADALTGLTALQYLSLNNNR 353
Query: 240 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 299
++ F+ + +L VL L +NE+ L GLT L+ L+L++ I GL
Sbjct: 354 ITRISANAFTGLTALTVLYLSYNELPSISANALAGLTALQYLSLNNNQITSIAAAAFAGL 413
Query: 300 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 359
L L L + Q+ S +GL+ L+ ++L+ I+ + GL++L SL L+
Sbjct: 414 TALTHLPLDNNQITSISAEAFTGLSALQLLSLNSNQITSIAANAFTGLNALTSLYLNQNN 473
Query: 360 ITDTGLAALTSLTGLTHLDL 379
I A T LT LT L L
Sbjct: 474 IAGISANAFTGLTKLTQLYL 493
>gi|374586212|ref|ZP_09659304.1| hypothetical protein Lepil_2392 [Leptonema illini DSM 21528]
gi|373875073|gb|EHQ07067.1| hypothetical protein Lepil_2392 [Leptonema illini DSM 21528]
Length = 346
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 85/312 (27%), Positives = 148/312 (47%), Gaps = 9/312 (2%)
Query: 79 DCSNLQSLD-FNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLD 137
D + +++++ + + Q+ + +R + + +L T M + L KL
Sbjct: 26 DWAKVRAIEQYVYTGQLKGVTMAEIRAVKDWYAL------GATDAEMPRLLSMQRLEKLS 79
Query: 138 LERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGI 197
L LV+L G L+ LN+ ITD+ +K + + L+ L ++ +K+TD+G+
Sbjct: 80 LGGQNYTDAALVHLAGFKHLKELNLS-TGPITDAGLKSIGQIKTLEKLDLAETKITDAGV 138
Query: 198 AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 257
A L GL +L L+L VT AC+ S+ + SL L LN ++D G E+ + L+ L
Sbjct: 139 ADLVGLSRLKDLSLIDTAVTDACMTSIMQMKSLEILQLNMTGITDRGVEQLIQHQRLRKL 198
Query: 258 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 317
LG +TDE + ++ + NL+ I +GLV L NL+ L L+DT V L
Sbjct: 199 ILGGTAVTDESVGYVAQIANLDEAVFSRTKIRGKGLVRLRQAKNLRRLWLADTSVDDDDL 258
Query: 318 RH-LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 376
L L+ ++L I+ ++ +A + +K L + +I + L L T L
Sbjct: 259 IELLQPPMELDMLHLGHLKITGKTMEAIARCNCVKDLYVGYTKIGNDDLLKLIPATRLKS 318
Query: 377 LDLFGARITDSG 388
+ + R+TD G
Sbjct: 319 ITVTKTRVTDDG 330
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 81/152 (53%)
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
+D + + L+ L+LG TD LVHL G +L+ LNL + I D GL ++ +
Sbjct: 62 TDAEMPRLLSMQRLEKLSLGGQNYTDAALVHLAGFKHLKELNLSTGPITDAGLKSIGQIK 121
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
L+ L+L++T++ +G+ L GL+ L+ ++L T ++D + + + SL+ L L+ I
Sbjct: 122 TLEKLDLAETKITDAGVADLVGLSRLKDLSLIDTAVTDACMTSIMQMKSLEILQLNMTGI 181
Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
TD G+ L L L L G +TD Y+
Sbjct: 182 TDRGVEQLIQHQRLRKLILGGTAVTDESVGYV 213
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 87/340 (25%), Positives = 157/340 (46%), Gaps = 39/340 (11%)
Query: 3 PRDISQ-QIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYP-GVNDKWMDVIASQGSSLL 60
P D ++ + + VY+ L V++ R A++D Y G D M + S L
Sbjct: 24 PADWAKVRAIEQYVYTGQLKGVTMAEIR--AVKDW----YALGATDAEMPRLLSM-QRLE 76
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
+ L G + TD+ L+HL G +HL+ L NL++ IT
Sbjct: 77 KLSLGGQNYTDAALVHL-------------------AGFKHLKEL-NLST------GPIT 110
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
G+K+ + L KLDL G+ +L GL +L+ L++ +TD+ M + +
Sbjct: 111 DAGLKSIGQIKTLEKLDLAETKITDAGVADLVGLSRLKDLSL-IDTAVTDACMTSIMQMK 169
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
+L+ LQ++ + +TD G+ L Q+L L L G VT + ++ + +L +R ++
Sbjct: 170 SLEILQLNMTGITDRGVEQLIQHQRLRKLILGGTAVTDESVGYVAQIANLDEAVFSRTKI 229
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVH-LKGLTNLESLNLDSCGIGDEGLVNLTGL 299
G + + +L+ L L + D+ L+ L+ L+ L+L I + + +
Sbjct: 230 RGKGLVRLRQAKNLRRLWLADTSVDDDDLIELLQPPMELDMLHLGHLKITGKTMEAI-AR 288
Query: 300 CN-LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
CN +K L + T++G+ L L T L+SI ++ T ++D
Sbjct: 289 CNCVKDLYVGYTKIGNDDLLKLIPATRLKSITVTKTRVTD 328
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 78/178 (43%)
Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 276
T A + L ++ L L+L +D + LK LNL ITD L + +
Sbjct: 62 TDAEMPRLLSMQRLEKLSLGGQNYTDAALVHLAGFKHLKELNLSTGPITDAGLKSIGQIK 121
Query: 277 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 336
LE L+L I D G+ +L GL LK L L DT V + + + + +LE + L+ TGI
Sbjct: 122 TLEKLDLAETKITDAGVADLVGLSRLKDLSLIDTAVTDACMTSIMQMKSLEILQLNMTGI 181
Query: 337 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRS 394
+D + +L L+ L L +TD + + + L +I G LR
Sbjct: 182 TDRGVEQLIQHQRLRKLILGGTAVTDESVGYVAQIANLDEAVFSRTKIRGKGLVRLRQ 239
>gi|149176763|ref|ZP_01855374.1| leucine-rich repeat domain protein [Planctomyces maris DSM 8797]
gi|148844404|gb|EDL58756.1| leucine-rich repeat domain protein [Planctomyces maris DSM 8797]
Length = 416
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 68/226 (30%), Positives = 111/226 (49%), Gaps = 1/226 (0%)
Query: 167 CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 226
+TD+ + L+ + +L++L + +T + KL +L+L T L +LS
Sbjct: 151 SMTDNGLNELAEMNSLRTLGLHHLAITGDQLPP-NTFPKLKMLDLSDTRFTNQGLKNLSP 209
Query: 227 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 286
SL YL+L+ +S G ++ SK +L+ L LG +I L + L L+L
Sbjct: 210 NASLVYLHLSNTNVSSAGLQELSKFPNLRALRLGNLKIKAAAFAKLANMKRLYQLDLQGT 269
Query: 287 GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG 346
+ D + L+ L + L L +Q+ GLRHL+ + NLE++ L I+D L+ L+
Sbjct: 270 AVNDAVALQLSQLDQITQLRLDQSQITDQGLRHLATMKNLETLFLPGAKITDSGLKVLSQ 329
Query: 347 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
L L L+L QI+D GL L+ + L L+L R+TD L
Sbjct: 330 LPKLDYLDLSDTQISDEGLRQLSKIPALRMLNLSNTRVTDQAKQIL 375
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 65/214 (30%), Positives = 103/214 (48%)
Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
D P + LK L +S ++ T+ G+ L L L+L V++A L LS +L
Sbjct: 179 DQLPPNTFPKLKMLDLSDTRFTNQGLKNLSPNASLVYLHLSNTNVSSAGLQELSKFPNLR 238
Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
L L ++ K + + L L+L + D + L L + L LD I D+
Sbjct: 239 ALRLGNLKIKAAAFAKLANMKRLYQLDLQGTAVNDAVALQLSQLDQITQLRLDQSQITDQ 298
Query: 292 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 351
GL +L + NL+ L L ++ SGL+ LS L L+ ++LS T ISD LR+L+ + +L+
Sbjct: 299 GLRHLATMKNLETLFLPGAKITDSGLKVLSQLPKLDYLDLSDTQISDEGLRQLSKIPALR 358
Query: 352 SLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
LNL ++TD L L ++ F I+
Sbjct: 359 MLNLSNTRVTDQAKQILLQFPALESIEAFNTSIS 392
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 87/320 (27%), Positives = 147/320 (45%), Gaps = 42/320 (13%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLS------VDLSGSDVTDSGLIHLKDCSNLQS 85
++Q+L LG N +I QG++ L + ++G +TD+GL L + ++L++
Sbjct: 114 SIQNLTLG-----NPHNPTIITDQGATYLKQQKLGHLGITGGSMTDNGLNELAEMNSLRT 168
Query: 86 LDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH 145
L GL HL AIT + L LDL +
Sbjct: 169 L-----------GLHHL---------------AITGDQLPP-NTFPKLKMLDLSDTRFTN 201
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK 205
GL NL L L++ N ++ + ++ LS NL++L++ K+ + A L +++
Sbjct: 202 QGLKNLSPNASLVYLHLSNTN-VSSAGLQELSKFPNLRALRLGNLKIKAAAFAKLANMKR 260
Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265
L L+L+G V A LS L + L L++ Q++D G + + +L+ L L +IT
Sbjct: 261 LYQLDLQGTAVNDAVALQLSQLDQITQLRLDQSQITDQGLRHLATMKNLETLFLPGAKIT 320
Query: 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG---LRHLSG 322
D L L L L+ L+L I DEGL L+ + L+ L LS+T+V L
Sbjct: 321 DSGLKVLSQLPKLDYLDLSDTQISDEGLRQLSKIPALRMLNLSNTRVTDQAKQILLQFPA 380
Query: 323 LTNLESINLSFTGISDGSLR 342
L ++E+ N S + ++ +R
Sbjct: 381 LESIEAFNTSISPVTIEDIR 400
>gi|46447568|ref|YP_008933.1| hypothetical protein pc1934 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46401209|emb|CAF24658.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 261
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 93/249 (37%), Positives = 140/249 (56%), Gaps = 10/249 (4%)
Query: 155 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEG 213
M L+ LN+ C+ +T++ + L+ L L+ L +S CS++TD+G+A+L L L L L
Sbjct: 1 MALKYLNLSGCSKLTNAGLAHLTPLKTLQHLNLSRCSRLTDAGLAHLTPLTALQHLGLSY 60
Query: 214 CP-VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLG-FNEITDECLV 270
C +T A L L+ L +L L L C+ L+D G + + SL+ L+L +TD+ LV
Sbjct: 61 CENLTDAGLAHLALLTALQDLALANCKHLTDVGLVHLTPLTSLQHLDLSNCMNLTDDGLV 120
Query: 271 HLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD--TQVGSSGLRHLSGLTNLE 327
HL LT L+ L L C + D GL +LT L L+ L L + GL HL+ LT L+
Sbjct: 121 HLTPLTALQHLVLSGCDNLTDAGLAHLTPLTALQTLGLRRWCQNLTGDGLAHLAPLTALQ 180
Query: 328 SINLSF-TGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGAR-I 384
+++LS+ + D L L L++L++L L ++TD GLA L L L HLDL R +
Sbjct: 181 TLDLSYCKNLKDAGLAHLTPLTALQTLGLKWCSKLTDAGLAHLKPLAALQHLDLSHCRSL 240
Query: 385 TDSGAAYLR 393
TD+G A +
Sbjct: 241 TDAGLARFK 249
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 84/241 (34%), Positives = 128/241 (53%), Gaps = 8/241 (3%)
Query: 62 VDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
++LSG S +T++GL HL LQ L+ + C +++D GL HL L+ L L +T
Sbjct: 6 LNLSGCSKLTNAGLAHLTPLKTLQHLNLSRCSRLTDAGLAHLTPLTALQHLGLSYCENLT 65
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGL 179
G+ A L L L L C + GLV+L L L+ L++ C +TD + L+ L
Sbjct: 66 DAGLAHLALLTALQDLALANCKHLTDVGLVHLTPLTSLQHLDLSNCMNLTDDGLVHLTPL 125
Query: 180 TNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNL-EGCP-VTAACLDSLSALGSLFYLNLN 236
T L+ L +S C +TD+G+A+L L L L L C +T L L+ L +L L+L+
Sbjct: 126 TALQHLVLSGCDNLTDAGLAHLTPLTALQTLGLRRWCQNLTGDGLAHLAPLTALQTLDLS 185
Query: 237 RCQ-LSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGL 293
C+ L D G + + +L+ L L + +++TD L HLK L L+ L+L C + D GL
Sbjct: 186 YCKNLKDAGLAHLTPLTALQTLGLKWCSKLTDAGLAHLKPLAALQHLDLSHCRSLTDAGL 245
Query: 294 V 294
Sbjct: 246 A 246
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 57 SSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
++L ++DLS ++ D+GL HL + LQ+L +C +++D GL HL+ L+ L L
Sbjct: 177 TALQTLDLSYCKNLKDAGLAHLTPLTALQTLGLKWCSKLTDAGLAHLKPLAALQHLDLSH 236
Query: 116 NNAITAQGMKAFAGLINLVKLDLER 140
++T G+ F L + L++ R
Sbjct: 237 CRSLTDAGLARFKILATSLNLEIVR 261
>gi|290999671|ref|XP_002682403.1| LRR_RI domain-containing protein [Naegleria gruberi]
gi|284096030|gb|EFC49659.1| LRR_RI domain-containing protein [Naegleria gruberi]
Length = 403
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 83/288 (28%), Positives = 140/288 (48%), Gaps = 4/288 (1%)
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW 164
+ +LT L R ++ +G+K + L L KL + G+ + L +L L+I
Sbjct: 109 MKSLTKLIIRCDDE---EGVKYISELKQLTKLTIYGSHIGDEGVRYISELKQLTYLSIP- 164
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
N I++ K L L L +L I C++V + G Y+ L++LT L+++ + A L
Sbjct: 165 SNGISEYGAKHLRELKQLTTLIIFCNRVGNEGSKYISELKQLTTLSIDENDIGAEGAKYL 224
Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284
S L L L+++ L D+G + SK+ L L++ N I +E + L L++L++
Sbjct: 225 SELTQLTCLDISSNWLGDEGAKYVSKMKQLTTLHINSNRIGNEGSKFISSLNQLKNLDIC 284
Query: 285 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 344
IGDEGL L LK L+LS ++G G ++LS L L +++ + D +
Sbjct: 285 KNDIGDEGLEYFGQLAQLKSLDLSYNRIGDEGAQYLSELKQLIYLDIKTNHLGDKGAMPI 344
Query: 345 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
L L L ++ +I + G ++ L LT LD+ IT+ G Y
Sbjct: 345 GELKKLIYLYINNNKIRNEGAKYISELKQLTKLDIRNNFITEEGTKYF 392
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 119/238 (50%)
Query: 152 KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
+ L+ ++SL C + +K +S L L L I S + D G+ Y+ L++LT L++
Sbjct: 104 RKLILMKSLTKLIIRCDDEEGVKYISELKQLTKLTIYGSHIGDEGVRYISELKQLTYLSI 163
Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 271
++ L L L L + ++ ++G + S++ L L++ N+I E +
Sbjct: 164 PSNGISEYGAKHLRELKQLTTLIIFCNRVGNEGSKYISELKQLTTLSIDENDIGAEGAKY 223
Query: 272 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 331
L LT L L++ S +GDEG ++ + L L ++ ++G+ G + +S L L+++++
Sbjct: 224 LSELTQLTCLDISSNWLGDEGAKYVSKMKQLTTLHINSNRIGNEGSKFISSLNQLKNLDI 283
Query: 332 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 389
I D L L+ LKSL+L +I D G L+ L L +LD+ + D GA
Sbjct: 284 CKNDIGDEGLEYFGQLAQLKSLDLSYNRIGDEGAQYLSELKQLIYLDIKTNHLGDKGA 341
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 112/226 (49%), Gaps = 2/226 (0%)
Query: 167 CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 226
IT + L + +L L I C + G+ Y+ L++LT L + G + + +S
Sbjct: 97 VITRDTYRKLILMKSLTKLIIRCDD--EEGVKYISELKQLTKLTIYGSHIGDEGVRYISE 154
Query: 227 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 286
L L YL++ +S+ G + ++ L L + N + +E ++ L L +L++D
Sbjct: 155 LKQLTYLSIPSNGISEYGAKHLRELKQLTTLIIFCNRVGNEGSKYISELKQLTTLSIDEN 214
Query: 287 GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG 346
IG EG L+ L L CL++S +G G +++S + L +++++ I + + ++
Sbjct: 215 DIGAEGAKYLSELTQLTCLDISSNWLGDEGAKYVSKMKQLTTLHINSNRIGNEGSKFISS 274
Query: 347 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
L+ LK+L++ I D GL L L LDL RI D GA YL
Sbjct: 275 LNQLKNLDICKNDIGDEGLEYFGQLAQLKSLDLSYNRIGDEGAQYL 320
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 75/290 (25%), Positives = 139/290 (47%), Gaps = 6/290 (2%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
R L N+ +L IT + + +L KL + RC G+ + L +L L I
Sbjct: 85 RFLQNIATLKV---GVITRDTYRKLILMKSLTKLII-RCDD-EEGVKYISELKQLTKLTI 139
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
+ + I D ++ +S L L L I + +++ G +L+ L++LT L + V
Sbjct: 140 -YGSHIGDEGVRYISELKQLTYLSIPSNGISEYGAKHLRELKQLTTLIIFCNRVGNEGSK 198
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282
+S L L L+++ + +G + S++ L L++ N + DE ++ + L +L+
Sbjct: 199 YISELKQLTTLSIDENDIGAEGAKYLSELTQLTCLDISSNWLGDEGAKYVSKMKQLTTLH 258
Query: 283 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 342
++S IG+EG ++ L LK L++ +G GL + L L+S++LS+ I D +
Sbjct: 259 INSNRIGNEGSKFISSLNQLKNLDICKNDIGDEGLEYFGQLAQLKSLDLSYNRIGDEGAQ 318
Query: 343 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
L+ L L L++ + D G + L L +L + +I + GA Y+
Sbjct: 319 YLSELKQLIYLDIKTNHLGDKGAMPIGELKKLIYLYINNNKIRNEGAKYI 368
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 73/284 (25%), Positives = 133/284 (46%), Gaps = 2/284 (0%)
Query: 96 DGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLM 155
+ G++++ L LT L+ + I +G++ + L L L + G +L+ L
Sbjct: 122 EEGVKYISELKQLTKLTIY-GSHIGDEGVRYISELKQLTYLSIPSNGISEYGAKHLRELK 180
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215
+L +L I +CN + + K +S L L +L I + + G YL L +LT L++
Sbjct: 181 QLTTL-IIFCNRVGNEGSKYISELKQLTTLSIDENDIGAEGAKYLSELTQLTCLDISSNW 239
Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 275
+ +S + L L++N ++ ++G + S + LK L++ N+I DE L + L
Sbjct: 240 LGDEGAKYVSKMKQLTTLHINSNRIGNEGSKFISSLNQLKNLDICKNDIGDEGLEYFGQL 299
Query: 276 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 335
L+SL+L IGDEG L+ L L L++ +G G + L L + ++
Sbjct: 300 AQLKSLDLSYNRIGDEGAQYLSELKQLIYLDIKTNHLGDKGAMPIGELKKLIYLYINNNK 359
Query: 336 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
I + + ++ L L L++ IT+ G T + L L +
Sbjct: 360 IRNEGAKYISELKQLTKLDIRNNFITEEGTKYFTEMKQLIDLTI 403
>gi|406830019|ref|ZP_11089613.1| hypothetical protein SpalD1_00225 [Schlesneria paludicola DSM
18645]
Length = 509
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 103/354 (29%), Positives = 156/354 (44%), Gaps = 47/354 (13%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLT------- 109
++L +++L+G+D+TD+ L+D +L LD +ISD +E L L NL
Sbjct: 118 NALGTLNLNGTDITDADFSELRDLRHLSLLDLG-GTRISDASIEGLSQLKNLKELWIDGT 176
Query: 110 --------SLSFRRNNAITAQGMKAFAGLINLVK-------------------------L 136
SL NAI + + I ++ L
Sbjct: 177 EITDAGVQSLKEALPNAIVGKDAPDESQAIETIRSLGGGVTRDEAVAGRPVIEVGFGGFL 236
Query: 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCN------CITDSDMKPLSGLTNLKSLQISCS 190
D+ T I L +K L +L + T K +S L NL L I
Sbjct: 237 DVGPKTTIEEVLSAVKQFRSLRTLQLGSSGDASHGLLATADGWKEISELNNLTRLTIIGI 296
Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 250
++TD+G+ + L +L L L +T + + L +L L L QL+D G +
Sbjct: 297 EITDAGLKEISRLSQLESLRLINLKITNQGMKEIGKLKNLTNLGLFDVQLTDAGLNQLRG 356
Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 310
+ L L+L N I+DE L + LT+L L++ S I D GL L GL +LK L L+ T
Sbjct: 357 LQRLDTLSLNNNPISDEGLRQVGALTSLTFLSVPSTEITDNGLKGLRGLSSLKNLCLAST 416
Query: 311 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 364
++ GL+ L GL NLE ++L+ T ++ + L L SL SL L QI+D G
Sbjct: 417 RISDDGLKGLIGLNNLEQLDLAGTRVTGTGVGPLRELESLHSLGLSNTQISDEG 470
Score = 39.7 bits (91), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 83/192 (43%), Gaps = 27/192 (14%)
Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 280
L S +ALG+L NLN ++D + + L +L+LG I+D + L L NL+
Sbjct: 114 LKSFNALGTL---NLNGTDITDADFSELRDLRHLSLLDLGGTRISDASIEGLSQLKNLKE 170
Query: 281 LNLDSCGIGDEGLVNLT-GLCN-LKCLELSDTQVGSSGLRHL-SGLTNLES------INL 331
L +D I D G+ +L L N + + D +R L G+T E+ I +
Sbjct: 171 LWIDGTEITDAGVQSLKEALPNAIVGKDAPDESQAIETIRSLGGGVTRDEAVAGRPVIEV 230
Query: 332 SFTGISD--------GSLRKLAGLSSLKSLNL----DARQ---ITDTGLAALTSLTGLTH 376
F G D L + SL++L L DA T G ++ L LT
Sbjct: 231 GFGGFLDVGPKTTIEEVLSAVKQFRSLRTLQLGSSGDASHGLLATADGWKEISELNNLTR 290
Query: 377 LDLFGARITDSG 388
L + G ITD+G
Sbjct: 291 LTIIGIEITDAG 302
>gi|290993170|ref|XP_002679206.1| leucine rich repeat protein [Naegleria gruberi]
gi|284092822|gb|EFC46462.1| leucine rich repeat protein [Naegleria gruberi]
Length = 527
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 92/348 (26%), Positives = 166/348 (47%), Gaps = 12/348 (3%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L + + S + D G+ ++ + L L + ISD G+++LR L LT+L
Sbjct: 118 SELKQLTRLTIDASHIRDEGVRYISELKQLAYLSVH-SNDISDDGVKYLRELKQLTTLII 176
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG---------LMKLESLNIKW 164
+N + ++G K + L L L ++ G N G L +L SL I
Sbjct: 177 F-SNRVGSEGCKCISELKQLTSLCIDDNHINDEGANNRVGSEGCKCISELKQLTSLCID- 234
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
N I D K LS L L L IS + + + G Y+ L +L LN+ + L+
Sbjct: 235 DNHINDEGAKYLSELAQLTYLDISSNGLGNEGTKYISTLNQLEKLNISQNYIGDEGLEYF 294
Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284
L L L L+ ++ +G + S++ L L++ +N+I D+ ++ L L +L ++
Sbjct: 295 GKLSQLTSLELSNNKIGTEGAKYLSELKQLTQLDIEYNKIGDKGAMYFGELKQLVNLIIN 354
Query: 285 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 344
+ IG++G+ + L L L++S+ ++G+ G++++ L L +N+S I + + +
Sbjct: 355 NNRIGNDGVKYIGELKQLIYLDISENRIGNEGIKYIGELKQLTDVNISENRIGNEGAKYI 414
Query: 345 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
LS L SL L I + G ++ L L +L + +I + GA Y+
Sbjct: 415 GQLSQLTSLYLSNNNIGNEGAKYISELKELIYLYMNNNKIRNEGAKYI 462
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 78/253 (30%), Positives = 117/253 (46%), Gaps = 15/253 (5%)
Query: 152 KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
K L+ ++SL C + K +S L L L I S + D G+ Y+ L++L L++
Sbjct: 93 KKLISMKSLTELIIKCDDEGSAKFISELKQLTRLTIDASHIRDEGVRYISELKQLAYLSV 152
Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE---- 267
++ + L L L L + ++ +GC+ S++ L L + N I DE
Sbjct: 153 HSNDISDDGVKYLRELKQLTTLIIFSNRVGSEGCKCISELKQLTSLCIDDNHINDEGANN 212
Query: 268 --------CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 319
C+ LK LT SL +D I DEG L+ L L L++S +G+ G ++
Sbjct: 213 RVGSEGCKCISELKQLT---SLCIDDNHINDEGAKYLSELAQLTYLDISSNGLGNEGTKY 269
Query: 320 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
+S L LE +N+S I D L LS L SL L +I G L+ L LT LD+
Sbjct: 270 ISTLNQLEKLNISQNYIGDEGLEYFGKLSQLTSLELSNNKIGTEGAKYLSELKQLTQLDI 329
Query: 380 FGARITDSGAAYL 392
+I D GA Y
Sbjct: 330 EYNKIGDKGAMYF 342
Score = 88.2 bits (217), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 85/347 (24%), Positives = 160/347 (46%), Gaps = 10/347 (2%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L + + +D++D G+ +L++ L +L F ++ G + + L LTSL
Sbjct: 142 SELKQLAYLSVHSNDISDDGVKYLRELKQLTTLII-FSNRVGSEGCKCISELKQLTSLCI 200
Query: 114 R--------RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC 165
NN + ++G K + L L L ++ G L L +L L+I
Sbjct: 201 DDNHINDEGANNRVGSEGCKCISELKQLTSLCIDDNHINDEGAKYLSELAQLTYLDIS-S 259
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
N + + K +S L L+ L IS + + D G+ Y L +LT L L + LS
Sbjct: 260 NGLGNEGTKYISTLNQLEKLNISQNYIGDEGLEYFGKLSQLTSLELSNNKIGTEGAKYLS 319
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
L L L++ ++ D G F ++ L L + N I ++ + ++ L L L++
Sbjct: 320 ELKQLTQLDIEYNKIGDKGAMYFGELKQLVNLIINNNRIGNDGVKYIGELKQLIYLDISE 379
Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 345
IG+EG+ + L L + +S+ ++G+ G +++ L+ L S+ LS I + + ++
Sbjct: 380 NRIGNEGIKYIGELKQLTDVNISENRIGNEGAKYIGQLSQLTSLYLSNNNIGNEGAKYIS 439
Query: 346 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
L L L ++ +I + G ++ + +T LD+ I + G Y+
Sbjct: 440 ELKELIYLYMNNNKIRNEGAKYISEMKQVTQLDIGNNYIGEEGIKYI 486
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/239 (29%), Positives = 112/239 (46%), Gaps = 19/239 (7%)
Query: 167 CITDSDMKPLSGLTNLKSLQISCSKVTDSGIA-YLKGLQKLTLLNLEGCPVTAACLDSLS 225
C T+ K L + +L L I C D G A ++ L++LT L ++ + + +S
Sbjct: 86 CATNDTCKKLISMKSLTELIIKCD---DEGSAKFISELKQLTRLTIDASHIRDEGVRYIS 142
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE---CLVHLKGLTNLESLN 282
L L YL+++ +SDDG + ++ L L + N + E C+ LK LT SL
Sbjct: 143 ELKQLAYLSVHSNDISDDGVKYLRELKQLTTLIIFSNRVGSEGCKCISELKQLT---SLC 199
Query: 283 LDSCGIGDEGLVNLTGLCNLKCLE---------LSDTQVGSSGLRHLSGLTNLESINLSF 333
+D I DEG N G KC+ + D + G ++LS L L +++S
Sbjct: 200 IDDNHINDEGANNRVGSEGCKCISELKQLTSLCIDDNHINDEGAKYLSELAQLTYLDISS 259
Query: 334 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
G+ + + ++ L+ L+ LN+ I D GL L+ LT L+L +I GA YL
Sbjct: 260 NGLGNEGTKYISTLNQLEKLNISQNYIGDEGLEYFGKLSQLTSLELSNNKIGTEGAKYL 318
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 71/288 (24%), Positives = 128/288 (44%), Gaps = 26/288 (9%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
I+D G ++L L+ LT L +N + +G K + L L KL++ + GL
Sbjct: 237 HINDEGAKYLSELAQLTYLDIS-SNGLGNEGTKYISTLNQLEKLNISQNYIGDEGLEYFG 295
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
L +L SL + N I K LS L L L I +K+ D G Y L++L L
Sbjct: 296 KLSQLTSLELS-NNKIGTEGAKYLSELKQLTQLDIEYNKIGDKGAMYFGELKQLVNL--- 351
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
+N NR + +DG + ++ L L++ N I +E + ++
Sbjct: 352 -------------------IINNNR--IGNDGVKYIGELKQLIYLDISENRIGNEGIKYI 390
Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 332
L L +N+ IG+EG + L L L LS+ +G+ G +++S L L + ++
Sbjct: 391 GELKQLTDVNISENRIGNEGAKYIGQLSQLTSLYLSNNNIGNEGAKYISELKELIYLYMN 450
Query: 333 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 380
I + + ++ + + L++ I + G+ ++ + L HL+ +
Sbjct: 451 NNKIRNEGAKYISEMKQVTQLDIGNNYIGEEGIKYISEMKQLIHLEKY 498
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 79/294 (26%), Positives = 144/294 (48%), Gaps = 22/294 (7%)
Query: 18 RCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHL 77
+C++E+ L LC+ +ND+ + S+ + L +D+S + + + G ++
Sbjct: 220 KCISELK-------QLTSLCIDD-NHINDEGAKYL-SELAQLTYLDISSNGLGNEGTKYI 270
Query: 78 KDCSNLQSLDF--NFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135
+ L+ L+ N+ I D GLE+ LS LTSL NN I +G K + L L +
Sbjct: 271 STLNQLEKLNISQNY---IGDEGLEYFGKLSQLTSLELS-NNKIGTEGAKYLSELKQLTQ 326
Query: 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS 195
LD+E G + L +L +L I N I + +K + L L L IS +++ +
Sbjct: 327 LDIEYNKIGDKGAMYFGELKQLVNLIIN-NNRIGNDGVKYIGELKQLIYLDISENRIGNE 385
Query: 196 GIAYLKGLQKLTLLNLEGCPVT---AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG 252
GI Y+ L++LT +N+ + A + LS L SL+ N N + ++G + S++
Sbjct: 386 GIKYIGELKQLTDVNISENRIGNEGAKYIGQLSQLTSLYLSNNN---IGNEGAKYISELK 442
Query: 253 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 306
L L + N+I +E ++ + + L++ + IG+EG+ ++ + L LE
Sbjct: 443 ELIYLYMNNNKIRNEGAKYISEMKQVTQLDIGNNYIGEEGIKYISEMKQLIHLE 496
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 30/57 (52%)
Query: 338 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRS 394
+GS + ++ L L L +DA I D G+ ++ L L +L + I+D G YLR
Sbjct: 111 EGSAKFISELKQLTRLTIDASHIRDEGVRYISELKQLAYLSVHSNDISDDGVKYLRE 167
>gi|242089917|ref|XP_002440791.1| hypothetical protein SORBIDRAFT_09g006650 [Sorghum bicolor]
gi|241946076|gb|EES19221.1| hypothetical protein SORBIDRAFT_09g006650 [Sorghum bicolor]
Length = 608
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 119/470 (25%), Positives = 196/470 (41%), Gaps = 112/470 (23%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
LP ++ +F L R L LE F +++++ L + V+ +W+ + S +
Sbjct: 44 LPAPLADALFRRLAARRLLFPSLLEVFSR-SVEEVDLSGFLSVDAEWLAYLGSFRFLRVL 102
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
++ + + L + L+ LD + C +ISD G++H+ + +L L +T
Sbjct: 103 TLADCKNIDNDAVWSLSGMNTLKDLDLSRCKKISDAGIKHIVTIESLEKLHLSETE-LTN 161
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
G+ + L NL LDL GG++ +TD ++ L LT
Sbjct: 162 NGVMLISSLTNLSFLDL-------GGIL------------------MTDKSLQSLQVLTR 196
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLE-------GCPVTAACLD------------ 222
L+ L I S+ T+ G + LK +L LNL P T CL+
Sbjct: 197 LEHLDIWGSETTNEGASTLKSFARLIFLNLALTRVNHLSIPPTTRCLNMSNCEIHSICDE 256
Query: 223 -------------SLSALG------------SLFYLNLNRCQLSDDGCEKFSKIGSLKVL 257
S + G SL +L+L+ C+LS+ K+ +L+ L
Sbjct: 257 DSEVPVPLENFIVSAATFGNIDKVFSSIQASSLTHLDLSSCKLSN--LSFLEKMKNLEHL 314
Query: 258 NLGFNEITDECLVHLKGL-TNLESLNLDSCGIGDEGLVNLTG-LCNLKCLELSDTQVGSS 315
+L +N ITD + H+ L TNL+ L+L + GI + L L G + NL L L++T++ S
Sbjct: 315 DLSYNIITDGAIEHIAKLGTNLQYLSLKNTGITSQALCILAGTVPNLTSLSLANTKIDDS 374
Query: 316 ----------------------------------GLRHLSG---LTNLESINLSFTGISD 338
G H+S L LES+NL T +S
Sbjct: 375 ALAYIGMIPLLRTIDLSQTSIKGCALENKFYLMAGFTHMSAFEHLKYLESLNLEDTPLSA 434
Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 388
+ LA L++LK L L + ++D L AL++ + L HL G ++ SG
Sbjct: 435 EVIPPLASLAALKYLYLKSDFLSDPALHALSAASNLIHLGFCGNILSSSG 484
Score = 67.8 bits (164), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 118/244 (48%), Gaps = 34/244 (13%)
Query: 55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGL-SNLTSLSF 113
Q SSL +DLS + S L L+ NL+ LD ++ I I+DG +EH+ L +NL LS
Sbjct: 285 QASSLTHLDLSSCKL--SNLSFLEKMKNLEHLDLSYNI-ITDGAIEHIAKLGTNLQYLSL 341
Query: 114 RRNNAITAQGMKAFAGLI-NLVKLDLERCTRI------HGGLVNLKGLMKLESLNIKWCN 166
+ N IT+Q + AG + NL L L T+I + G++ L + L +IK
Sbjct: 342 K-NTGITSQALCILAGTVPNLTSLSLAN-TKIDDSALAYIGMIPLLRTIDLSQTSIK--G 397
Query: 167 CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 226
C ++ ++G T++ S +LK L+ L NLE P++A + L++
Sbjct: 398 CALENKFYLMAGFTHM------------SAFEHLKYLESL---NLEDTPLSAEVIPPLAS 442
Query: 227 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF--NEITDECLVHLKGLTNLESLNLD 284
L +L YL L LSD S +L ++LGF N ++ L+ T L L+L
Sbjct: 443 LAALKYLYLKSDFLSDPALHALSAASNL--IHLGFCGNILSSSGLLQFVPPTTLCVLDLS 500
Query: 285 SCGI 288
C I
Sbjct: 501 GCWI 504
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 90/152 (59%), Gaps = 5/152 (3%)
Query: 246 EKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLK 303
E FS+ S++ ++L GF + E L +L L L L C I ++ + +L+G+ LK
Sbjct: 68 EVFSR--SVEEVDLSGFLSVDAEWLAYLGSFRFLRVLTLADCKNIDNDAVWSLSGMNTLK 125
Query: 304 CLELSD-TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L+LS ++ +G++H+ + +LE ++LS T +++ + ++ L++L L+L +TD
Sbjct: 126 DLDLSRCKKISDAGIKHIVTIESLEKLHLSETELTNNGVMLISSLTNLSFLDLGGILMTD 185
Query: 363 TGLAALTSLTGLTHLDLFGARITDSGAAYLRS 394
L +L LT L HLD++G+ T+ GA+ L+S
Sbjct: 186 KSLQSLQVLTRLEHLDIWGSETTNEGASTLKS 217
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 73/281 (25%), Positives = 123/281 (43%), Gaps = 45/281 (16%)
Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP 215
L L + C I + + LSG+ LK L +S C K++D+GI ++ ++ L L+L
Sbjct: 99 LRVLTLADCKNIDNDAVWSLSGMNTLKDLDLSRCKKISDAGIKHIVTIESLEKLHLSETE 158
Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 275
+T + +S+L +L +L+L ++D + + L+ L++ +E T+E LK
Sbjct: 159 LTNNGVMLISSLTNLSFLDLGGILMTDKSLQSLQVLTRLEHLDIWGSETTNEGASTLKSF 218
Query: 276 TNLESLNLDSCGIGDEGLVNLTGLCNLK-------CLELSDTQVG--------------- 313
L LNL + + T N+ C E S+ V
Sbjct: 219 ARLIFLNLALTRVNHLSIPPTTRCLNMSNCEIHSICDEDSEVPVPLENFIVSAATFGNID 278
Query: 314 -------SSGLRH-------------LSGLTNLESINLSFTGISDGSLRKLAGL-SSLKS 352
+S L H L + NLE ++LS+ I+DG++ +A L ++L+
Sbjct: 279 KVFSSIQASSLTHLDLSSCKLSNLSFLEKMKNLEHLDLSYNIITDGAIEHIAKLGTNLQY 338
Query: 353 LNLDARQITDTGLAALT-SLTGLTHLDLFGARITDSGAAYL 392
L+L IT L L ++ LT L L +I DS AY+
Sbjct: 339 LSLKNTGITSQALCILAGTVPNLTSLSLANTKIDDSALAYI 379
>gi|254411888|ref|ZP_05025664.1| Leucine Rich Repeat domain protein [Coleofasciculus chthonoplastes
PCC 7420]
gi|196181610|gb|EDX76598.1| Leucine Rich Repeat domain protein [Coleofasciculus chthonoplastes
PCC 7420]
Length = 415
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 133/391 (34%), Positives = 202/391 (51%), Gaps = 60/391 (15%)
Query: 11 FNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVT 70
F EL ++ ++S+EA R L L + G ND ++ A SS + L+ +++
Sbjct: 35 FKELCQNQA--DLSVEAGRTV---QLLLAEV-GTND--CELAAENLSSRTELSLNRQEIS 86
Query: 71 DSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL 130
D L L + +NL+SL + QI+D + L L+NL L+ RRN IT + L
Sbjct: 87 D--LSPLSELTNLESLHLDGN-QITD--ICPLTELTNLKYLTLRRN-QIT--DICPLTEL 138
Query: 131 INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS 190
NL +L LE +I + +L L LE LN++ N IT + PL+ L NLK L + +
Sbjct: 139 TNLTELSLE-GNQI-ADVNSLAELTNLEFLNLE-NNQITT--ISPLAELQNLKRLHLEDN 193
Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCPVT-AACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 249
++TD I+ L GLQ LT L+LE +T + L + L LF + LN+ + S
Sbjct: 194 QITD--ISSLAGLQNLTWLHLEDNQITDISPLSEFTNLKGLFLV-LNQIK----DISPLS 246
Query: 250 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD----EGLVNLT-------- 297
++ +LK L L FN+I D + L L NL L+L+ I D GL NLT
Sbjct: 247 QLTNLKALELKFNQIQD--ISPLAELQNLTWLDLEDNQITDISPLSGLTNLTFLSLTYNQ 304
Query: 298 --------GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 349
GL NLK L+L+ Q+ + L+ LTNLE+++L+ I+D S L+GL +
Sbjct: 305 IQDVSPLSGLTNLKRLQLNFNQI--QDISPLAELTNLETLSLNGNQITDVS--PLSGLQN 360
Query: 350 LKSLNLDARQITDTGLAALTSLTGLTHLDLF 380
L +L+L+ QITD ++ L+GLT+L +
Sbjct: 361 LNALSLNGNQITD-----ISPLSGLTNLKVL 386
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 79/216 (36%), Positives = 116/216 (53%), Gaps = 16/216 (7%)
Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
SD+ PLS LTNL+SL + +++TD I L L L L L +T C L+ L +L
Sbjct: 86 SDLSPLSELTNLESLHLDGNQITD--ICPLTELTNLKYLTLRRNQITDIC--PLTELTNL 141
Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
L+L Q++D +++ +L+ LNL N+IT + L L NL+ L+L+ I D
Sbjct: 142 TELSLEGNQIAD--VNSLAELTNLEFLNLENNQIT--TISPLAELQNLKRLHLEDNQITD 197
Query: 291 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 350
+ +L GL NL L L D Q+ + + LS TNL+ + L I D + L+ L++L
Sbjct: 198 --ISSLAGLQNLTWLHLEDNQI--TDISPLSEFTNLKGLFLVLNQIKD--ISPLSQLTNL 251
Query: 351 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
K+L L QI D ++ L L LT LDL +ITD
Sbjct: 252 KALELKFNQIQD--ISPLAELQNLTWLDLEDNQITD 285
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 95/282 (33%), Positives = 137/282 (48%), Gaps = 49/282 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L + L G+ + D L + +NL+ L+ QI+ + L L NL L +
Sbjct: 139 TNLTELSLEGNQIADVN--SLAELTNLEFLNLENN-QIT--TISPLAELQNLKRLHLE-D 192
Query: 117 NAITAQGMKAFAGLINLVKLDLE--RCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSD 172
N IT + + AGL NL L LE + T I NLKGL + N I D
Sbjct: 193 NQIT--DISSLAGLQNLTWLHLEDNQITDISPLSEFTNLKGLFLV-------LNQI--KD 241
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
+ PLS LTNLK+L++ +++ D I+ L LQ LT L+LE +T + LS L +L +
Sbjct: 242 ISPLSQLTNLKALELKFNQIQD--ISPLAELQNLTWLDLEDNQITD--ISPLSGLTNLTF 297
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-- 290
L+L Q+ D S + +LK L L FN+I D + L LTNLE+L+L+ I D
Sbjct: 298 LSLTYNQIQD--VSPLSGLTNLKRLQLNFNQIQD--ISPLAELTNLETLSLNGNQITDVS 353
Query: 291 --EGLVNL----------------TGLCNLKCLELSDTQVGS 314
GL NL +GL NLK L L++ + S
Sbjct: 354 PLSGLQNLNALSLNGNQITDISPLSGLTNLKVLHLTENPIFS 395
>gi|46447283|ref|YP_008648.1| hypothetical protein pc1649 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400924|emb|CAF24373.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 521
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 69/178 (38%), Positives = 101/178 (56%), Gaps = 3/178 (1%)
Query: 65 SGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM 124
S +TD+GL L +NLQ L+ N C +++D GL HL L NL L + +T++G+
Sbjct: 324 SCHHLTDTGLACLPSLTNLQYLNLNGCKKLTDAGLAHLTPLVNLQYLDLGFCDKLTSKGL 383
Query: 125 KAFAGLINLVKLDLERCTRIH-GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
F LI L L+L C I GL +L L+ L+ LN+ C +TD+ + L L LK
Sbjct: 384 GHFKSLIALQHLNLSGCKFIRDNGLAHLTPLVALQYLNLSQCTFLTDAGLAHLVPLVALK 443
Query: 184 SLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQ 239
L +S C+ +T++G+A+L L L LNL GC ++ A L L+ L SL +LNL C+
Sbjct: 444 HLDLSWCNSLTNAGLAHLVHLVALQYLNLSGCIYLSEAGLAHLAPLTSLQHLNLEDCE 501
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 83/208 (39%), Positives = 115/208 (55%), Gaps = 7/208 (3%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGC 214
++E LN +TD+ + L NLK LQ+ SC +TD+G+A L L L LNL GC
Sbjct: 291 EIEGLNFSENAYLTDAHLLALKNCKNLKVLQLQSCHHLTDTGLACLPSLTNLQYLNLNGC 350
Query: 215 -PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVH 271
+T A L L+ L +L YL+L C +L+ G F + +L+ LNL G I D L H
Sbjct: 351 KKLTDAGLAHLTPLVNLQYLDLGFCDKLTSKGLGHFKSLIALQHLNLSGCKFIRDNGLAH 410
Query: 272 LKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESI 329
L L L+ LNL C + D GL +L L LK L+LS + ++GL HL L L+ +
Sbjct: 411 LTPLVALQYLNLSQCTFLTDAGLAHLVPLVALKHLDLSWCNSLTNAGLAHLVHLVALQYL 470
Query: 330 NLS-FTGISDGSLRKLAGLSSLKSLNLD 356
NLS +S+ L LA L+SL+ LNL+
Sbjct: 471 NLSGCIYLSEAGLAHLAPLTSLQHLNLE 498
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 77/221 (34%), Positives = 113/221 (51%), Gaps = 26/221 (11%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TD+ L+ LK+C NL+ L C ++D GL L L+NL L+ +T G+
Sbjct: 303 LTDAHLLALKNCKNLKVLQLQSCHHLTDTGLACLPSLTNLQYLNLNGCKKLTDAGLAHLT 362
Query: 129 GLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
L+NL LDL C ++ GL + K L+ L+ LN+ C I D+ + L+ L L+ L +
Sbjct: 363 PLVNLQYLDLGFCDKLTSKGLGHFKSLIALQHLNLSGCKFIRDNGLAHLTPLVALQYLNL 422
Query: 188 S-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQLSDDGC 245
S C+ +TD+G+A+L L L L+L C +T A L L L +L YLNL+ GC
Sbjct: 423 SQCTFLTDAGLAHLVPLVALKHLDLSWCNSLTNAGLAHLVHLVALQYLNLS-------GC 475
Query: 246 EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 286
S+ G L HL LT+L+ LNL+ C
Sbjct: 476 IYLSEAG----------------LAHLAPLTSLQHLNLEDC 500
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 108/227 (47%), Gaps = 28/227 (12%)
Query: 111 LSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCIT 169
L+F N +T + A NL L L+ C + GL L L L+ LN+ C +T
Sbjct: 295 LNFSENAYLTDAHLLALKNCKNLKVLQLQSCHHLTDTGLACLPSLTNLQYLNLNGCKKLT 354
Query: 170 DSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSAL 227
D+ + L+ L NL+ L + C K+T G+ + K L L LNL GC + L L+ L
Sbjct: 355 DAGLAHLTPLVNLQYLDLGFCDKLTSKGLGHFKSLIALQHLNLSGCKFIRDNGLAHLTPL 414
Query: 228 GSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDS 285
+L YLNL++C L+D G + +LK L+L + N +T+ L HL L L+ LNL
Sbjct: 415 VALQYLNLSQCTFLTDAGLAHLVPLVALKHLDLSWCNSLTNAGLAHLVHLVALQYLNLSG 474
Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 332
C + +GL HL+ LT+L+ +NL
Sbjct: 475 C-----------------------IYLSEAGLAHLAPLTSLQHLNLE 498
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/146 (41%), Positives = 82/146 (56%), Gaps = 6/146 (4%)
Query: 253 SLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD- 309
+LKVL L + +TD L L LTNL+ LNL+ C + D GL +LT L NL+ L+L
Sbjct: 316 NLKVLQLQSCHHLTDTGLACLPSLTNLQYLNLNGCKKLTDAGLAHLTPLVNLQYLDLGFC 375
Query: 310 TQVGSSGLRHLSGLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAA 367
++ S GL H L L+ +NLS I D L L L +L+ LNL +TD GLA
Sbjct: 376 DKLTSKGLGHFKSLIALQHLNLSGCKFIRDNGLAHLTPLVALQYLNLSQCTFLTDAGLAH 435
Query: 368 LTSLTGLTHLDL-FGARITDSGAAYL 392
L L L HLDL + +T++G A+L
Sbjct: 436 LVPLVALKHLDLSWCNSLTNAGLAHL 461
Score = 41.2 bits (95), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 3/70 (4%)
Query: 326 LESINLSFTG-ISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFG-A 382
+E +N S ++D L L +LK L L + +TDTGLA L SLT L +L+L G
Sbjct: 292 IEGLNFSENAYLTDAHLLALKNCKNLKVLQLQSCHHLTDTGLACLPSLTNLQYLNLNGCK 351
Query: 383 RITDSGAAYL 392
++TD+G A+L
Sbjct: 352 KLTDAGLAHL 361
Score = 39.3 bits (90), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 6/82 (7%)
Query: 319 HLSGLTNLESINL----SFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTG 373
HL L N +++ + S ++D L L L++L+ LNL+ +++TD GLA LT L
Sbjct: 307 HLLALKNCKNLKVLQLQSCHHLTDTGLACLPSLTNLQYLNLNGCKKLTDAGLAHLTPLVN 366
Query: 374 LTHLDL-FGARITDSGAAYLRS 394
L +LDL F ++T G + +S
Sbjct: 367 LQYLDLGFCDKLTSKGLGHFKS 388
>gi|46447197|ref|YP_008562.1| hypothetical protein pc1563 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400838|emb|CAF24287.1| hypothetical protein pc1563 [Candidatus Protochlamydia amoebophila
UWE25]
Length = 380
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 110/209 (52%), Gaps = 5/209 (2%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TD+ L+ LK+C NL+ L C ++D GL HL L L L+ +T G+
Sbjct: 172 LTDTHLLALKNCKNLKELHLQDCYMLTDAGLAHLASLVALQHLNLAGCRKLTDAGLAHLT 231
Query: 129 GLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
L+ L L L C + GL +L L+ L+ L++ C +T + L L L+ L +
Sbjct: 232 PLVVLQYLSLAGCDNLTDAGLAHLTPLVALQHLDLNGCPNLTGVGLAHLKPLVALQHLNL 291
Query: 188 S-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDDG 244
S C K+TD+G+A+LK L L LNL GC +T A L L L +L +L+L C L+D G
Sbjct: 292 SWCDKLTDAGLAHLKPLVALHYLNLAGCDKLTDAGLVHLMPLVTLQHLDLTACSNLTDVG 351
Query: 245 CEKFSKIGSLKVLNLGF-NEITDECLVHL 272
+ +L+ LNLG+ +TD L H+
Sbjct: 352 LAHLKPLVALQHLNLGWCPNLTDAGLAHI 380
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 75/217 (34%), Positives = 118/217 (54%), Gaps = 7/217 (3%)
Query: 111 LSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCIT 169
L+F ++T + A NL +L L+ C + GL +L L+ L+ LN+ C +T
Sbjct: 164 LNFSEKYSLTDTHLLALKNCKNLKELHLQDCYMLTDAGLAHLASLVALQHLNLAGCRKLT 223
Query: 170 DSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSAL 227
D+ + L+ L L+ L ++ C +TD+G+A+L L L L+L GCP +T L L L
Sbjct: 224 DAGLAHLTPLVVLQYLSLAGCDNLTDAGLAHLTPLVALQHLDLNGCPNLTGVGLAHLKPL 283
Query: 228 GSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDS 285
+L +LNL+ C +L+D G + +L LNL G +++TD LVHL L L+ L+L +
Sbjct: 284 VALQHLNLSWCDKLTDAGLAHLKPLVALHYLNLAGCDKLTDAGLVHLMPLVTLQHLDLTA 343
Query: 286 CG-IGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHL 320
C + D GL +L L L+ L L + +GL H+
Sbjct: 344 CSNLTDVGLAHLKPLVALQHLNLGWCPNLTDAGLAHI 380
Score = 88.2 bits (217), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 84/244 (34%), Positives = 122/244 (50%), Gaps = 30/244 (12%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC 214
++E LN +TD+ + L NLK L + C +TD+G+A+L L L LNL GC
Sbjct: 160 EIEGLNFSEKYSLTDTHLLALKNCKNLKELHLQDCYMLTDAGLAHLASLVALQHLNLAGC 219
Query: 215 -PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVH 271
+T A L L+ L L YL+L C L+D G + + +L+ L+L G +T L H
Sbjct: 220 RKLTDAGLAHLTPLVVLQYLSLAGCDNLTDAGLAHLTPLVALQHLDLNGCPNLTGVGLAH 279
Query: 272 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 331
LK L L+ LNL C +L+D +GL HL L L +NL
Sbjct: 280 LKPLVALQHLNLSWCD------------------KLTD-----AGLAHLKPLVALHYLNL 316
Query: 332 S-FTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDL-FGARITDSG 388
+ ++D L L L +L+ L+L A +TD GLA L L L HL+L + +TD+G
Sbjct: 317 AGCDKLTDAGLVHLMPLVTLQHLDLTACSNLTDVGLAHLKPLVALQHLNLGWCPNLTDAG 376
Query: 389 AAYL 392
A++
Sbjct: 377 LAHI 380
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 78/142 (54%), Gaps = 3/142 (2%)
Query: 62 VDLSGSD-VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
+ L+G D +TD+GL HL LQ LD N C ++ GL HL+ L L L+ + +T
Sbjct: 239 LSLAGCDNLTDAGLAHLTPLVALQHLDLNGCPNLTGVGLAHLKPLVALQHLNLSWCDKLT 298
Query: 121 AQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGL 179
G+ L+ L L+L C ++ GLV+L L+ L+ L++ C+ +TD + L L
Sbjct: 299 DAGLAHLKPLVALHYLNLAGCDKLTDAGLVHLMPLVTLQHLDLTACSNLTDVGLAHLKPL 358
Query: 180 TNLKSLQIS-CSKVTDSGIAYL 200
L+ L + C +TD+G+A++
Sbjct: 359 VALQHLNLGWCPNLTDAGLAHI 380
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 67/116 (57%), Gaps = 2/116 (1%)
Query: 58 SLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+L +DL+G ++T GL HLK LQ L+ ++C +++D GL HL+ L L L+
Sbjct: 260 ALQHLDLNGCPNLTGVGLAHLKPLVALQHLNLSWCDKLTDAGLAHLKPLVALHYLNLAGC 319
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDS 171
+ +T G+ L+ L LDL C+ + GL +LK L+ L+ LN+ WC +TD+
Sbjct: 320 DKLTDAGLVHLMPLVTLQHLDLTACSNLTDVGLAHLKPLVALQHLNLGWCPNLTDA 375
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 63/122 (51%), Gaps = 5/122 (4%)
Query: 278 LESLNL-DSCGIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLS-FT 334
+E LN + + D L+ L NLK L L D + +GL HL+ L L+ +NL+
Sbjct: 161 IEGLNFSEKYSLTDTHLLALKNCKNLKELHLQDCYMLTDAGLAHLASLVALQHLNLAGCR 220
Query: 335 GISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYL 392
++D L L L L+ L+L +TD GLA LT L L HLDL G +T G A+L
Sbjct: 221 KLTDAGLAHLTPLVVLQYLSLAGCDNLTDAGLAHLTPLVALQHLDLNGCPNLTGVGLAHL 280
Query: 393 RS 394
+
Sbjct: 281 KP 282
Score = 42.7 bits (99), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 44/79 (55%), Gaps = 5/79 (6%)
Query: 317 LRHLSGLTNLESINLSFT-GISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGL 374
L H S +E +N S ++D L L +LK L+L D +TD GLA L SL L
Sbjct: 154 LNHFSN--EIEGLNFSEKYSLTDTHLLALKNCKNLKELHLQDCYMLTDAGLAHLASLVAL 211
Query: 375 THLDLFGAR-ITDSGAAYL 392
HL+L G R +TD+G A+L
Sbjct: 212 QHLNLAGCRKLTDAGLAHL 230
>gi|325106627|ref|YP_004267695.1| hypothetical protein Plabr_0042 [Planctomyces brasiliensis DSM
5305]
gi|324966895|gb|ADY57673.1| leucine-rich repeat-containing protein [Planctomyces brasiliensis
DSM 5305]
Length = 526
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 104/398 (26%), Positives = 170/398 (42%), Gaps = 66/398 (16%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L + ++ + VTD+GL ++K L+S+D N ++S+ GL HL GL +L ++
Sbjct: 117 SKLEQLRTFAIAKTRVTDNGLRYVKAFRFLKSIDLNQN-KLSEAGLCHLEGLVSLREVNL 175
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
RR+ ++ +K L+ L KLDL H GL L +L SL + N I D +
Sbjct: 176 RRS-SVNGAALKWLQRLVLLEKLDLRNTNFTHHGLSFLTYFRRLRSLKLG-GNRIEDDGL 233
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
PL L+SL +S + ++D + L L +L L + G V+ L L+++ +L L
Sbjct: 234 FPLLQFPRLESLDLSGTPISDQAMKTLAQLPRLKRLYVPGTAVSDEGLQLLTSVSTLIAL 293
Query: 234 NLNRCQLSDDGCEKFSK-------------------IGSLKVLNLGFNEIT--------- 265
++ + ++ G ++ + I S VL + +T
Sbjct: 294 DVRKTAVTPSGVQQLEQHSPGLKIKSDAADLPSSHVIRSRDVLQMHGCHLTLSRSGDVIA 353
Query: 266 ------DECLVH----LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 315
+H L+ ++L+SL L+ + E L L + L+ L L
Sbjct: 354 CQAGEDASPPIHWFSALESFSSLKSLELNRLALDGEQLQFLKNMSQLQSLALKQCTFPPE 413
Query: 316 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS----- 370
L L L L ++L T +SD SL+ L L SL +L L +T TGL +L+S
Sbjct: 414 ALSVLKSLNRLAWLDLRDTPVSDESLQALGELPSLSNLCLSRTGVTATGLESLSSAPLLR 473
Query: 371 --------------------LTGLTHLDLFGARITDSG 388
L HLD+ G IT+ G
Sbjct: 474 DLVIKECGQIGDPAVLALEKFKNLKHLDIRGTNITEQG 511
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 86/273 (31%), Positives = 131/273 (47%), Gaps = 4/273 (1%)
Query: 122 QGMKAFAGLI-NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG-L 179
Q + F L NL +LDL C G + + + L +K NC D D L G L
Sbjct: 38 QSPEDFPALPENLQELDLTNCP--CGSKILAQPEFQETLLKLKCQNCDIDFDTLELIGQL 95
Query: 180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 239
+L+ L +S + + D G+ L L++L + VT L + A L ++LN+ +
Sbjct: 96 RSLQELDLSGTSLDDIGMEKLSKLEQLRTFAIAKTRVTDNGLRYVKAFRFLKSIDLNQNK 155
Query: 240 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 299
LS+ G + SL+ +NL + + L L+ L LE L+L + GL LT
Sbjct: 156 LSEAGLCHLEGLVSLREVNLRRSSVNGAALKWLQRLVLLEKLDLRNTNFTHHGLSFLTYF 215
Query: 300 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 359
L+ L+L ++ GL L LES++LS T ISD +++ LA L LK L +
Sbjct: 216 RRLRSLKLGGNRIEDDGLFPLLQFPRLESLDLSGTPISDQAMKTLAQLPRLKRLYVPGTA 275
Query: 360 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
++D GL LTS++ L LD+ +T SG L
Sbjct: 276 VSDEGLQLLTSVSTLIALDVRKTAVTPSGVQQL 308
>gi|431930507|ref|YP_007243553.1| TIR domain-containing protein [Thioflavicoccus mobilis 8321]
gi|431828810|gb|AGA89923.1| TIR domain-containing protein [Thioflavicoccus mobilis 8321]
Length = 1283
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 114/324 (35%), Positives = 166/324 (51%), Gaps = 33/324 (10%)
Query: 65 SGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA-QG 123
S + V D L L +NLQ+LD C ++D L L GL+NL SL + A T G
Sbjct: 126 SSTQVAD--LTPLAGLTNLQALDCG-CTPVTD--LTPLAGLTNLRSL----DCAYTPVAG 176
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
++ A L L LD R TR+ L L GL +L+ L+ C +D++P++ L NL+
Sbjct: 177 LEPLADLTTLKSLDC-RHTRV-ADLAPLAGLTELQFLD---CGDTRVADLEPVASLANLQ 231
Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT-AACLDSLSALGSLFYLNLNRCQLSD 242
SL ++V D + L GL L L+ C T A L L++L +L L+ ++D
Sbjct: 232 SLDCGGTRVVD--LTPLAGLANLQALD---CGFTQVADLAPLASLTNLQSLDCRSAPVTD 286
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
G + +G+L+ L F + D L L GLTNL SLN + + D L L + NL
Sbjct: 287 LG--PLASLGNLQSLICQFTPVAD--LAPLAGLTNLLSLNCWNTPVID--LAPLASIGNL 340
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
+ L S T V L L+GLTNL S+ + + ++D L LAGL++L+SL+ + + D
Sbjct: 341 QSLNCSSTPVAD--LASLAGLTNLRSLECAGSPVTD--LAPLAGLTNLRSLDCEGTPVAD 396
Query: 363 TGLAALTSLTGLTHLDLFGARITD 386
G L +LT L LD R+TD
Sbjct: 397 LG--PLINLTNLRSLDCGFTRVTD 418
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 112/345 (32%), Positives = 167/345 (48%), Gaps = 53/345 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L S+D + + V +GL L D + L+SLD +++D L L+ LT L F
Sbjct: 162 TNLRSLDCAYTPV--AGLEPLADLTTLKSLDCRH-TRVAD-----LAPLAGLTELQFLDC 213
Query: 117 NAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
++ A L NL LD C TR+ L L GL L++L+ C +D+
Sbjct: 214 GDTRVADLEPVASLANLQSLD---CGGTRVVD-LTPLAGLANLQALD---CGFTQVADLA 266
Query: 175 PLSGLTNLKSLQISCSKVTDSG--------------------IAYLKGLQKLTLLNLEGC 214
PL+ LTNL+SL + VTD G +A L GL L LN
Sbjct: 267 PLASLTNLQSLDCRSAPVTDLGPLASLGNLQSLICQFTPVADLAPLAGLTNLLSLNCWNT 326
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 274
PV L L+++G+L LN + ++D + + +L+ L + +TD L L G
Sbjct: 327 PVID--LAPLASIGNLQSLNCSSTPVAD--LASLAGLTNLRSLECAGSPVTD--LAPLAG 380
Query: 275 LTNLESLNLDSCGIGDEG-LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333
LTNL SL+ + + D G L+NLT NL+ L+ T+V + L L+GLTNL+S+
Sbjct: 381 LTNLRSLDCEGTPVADLGPLINLT---NLRSLDCGFTRV--TDLAPLAGLTNLQSLICRQ 435
Query: 334 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 378
T ++D L LA L++L+S +ITD L L L + LD
Sbjct: 436 TPVAD--LAPLAALNNLQSFACGNTRITD--LTPLADLANMESLD 476
Score = 77.8 bits (190), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 85/275 (30%), Positives = 128/275 (46%), Gaps = 44/275 (16%)
Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD------------- 194
L NL L L +L C+ +D+ PL+GLTNL++L C+ VTD
Sbjct: 108 LSNLGFLAGLTALQYLKCSSTQVADLTPLAGLTNLQALDCGCTPVTDLTPLAGLTNLRSL 167
Query: 195 ----SGIAYLKGLQKLTLLNLEGCPVT-AACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 249
+ +A L+ L LT L C T A L L+ L L +L+ +++D E +
Sbjct: 168 DCAYTPVAGLEPLADLTTLKSLDCRHTRVADLAPLAGLTELQFLDCGDTRVAD--LEPVA 225
Query: 250 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EGLVNLTGLCNLKCLELS 308
+ +L+ L+ G + D L L GL NL++L+ + D L +LT L +L C
Sbjct: 226 SLANLQSLDCGGTRVVD--LTPLAGLANLQALDCGFTQVADLAPLASLTNLQSLDCRSAP 283
Query: 309 DTQVGS-----------------SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 351
T +G + L L+GLTNL S+N T + D L LA + +L+
Sbjct: 284 VTDLGPLASLGNLQSLICQFTPVADLAPLAGLTNLLSLNCWNTPVID--LAPLASIGNLQ 341
Query: 352 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
SLN + + D LA+L LT L L+ G+ +TD
Sbjct: 342 SLNCSSTPVAD--LASLAGLTNLRSLECAGSPVTD 374
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 86/283 (30%), Positives = 121/283 (42%), Gaps = 71/283 (25%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L S+D + VTD G L NLQSL F ++D L L GL+NL SL+
Sbjct: 272 TNLQSLDCRSAPVTDLG--PLASLGNLQSLICQF-TPVAD--LAPLAGLTNLLSLNCWNT 326
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIH-GGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
I + A + NL L+ C+ L +L GL L SL C +D+ P
Sbjct: 327 PVID---LAPLASIGNLQSLN---CSSTPVADLASLAGLTNLRSLE---CAGSPVTDLAP 377
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
L+GLTNL+S L+ EG PV + LG L L
Sbjct: 378 LAGLTNLRS------------------------LDCEGTPV--------ADLGPLINLT- 404
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
+L+ L+ GF +TD L L GLTNL+SL + D L
Sbjct: 405 -----------------NLRSLDCGFTRVTD--LAPLAGLTNLQSLICRQTPVAD--LAP 443
Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
L L NL+ +T++ + L L+ L N+ES++ T IS+
Sbjct: 444 LAALNNLQSFACGNTRI--TDLTPLADLANMESLDCGETPISN 484
>gi|168700559|ref|ZP_02732836.1| hypothetical protein GobsU_13597 [Gemmata obscuriglobus UQM 2246]
Length = 446
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 85/295 (28%), Positives = 131/295 (44%), Gaps = 11/295 (3%)
Query: 99 LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKL 157
L L+GL +T ++F ++ +T + AG +L L C R+ G G L L +L
Sbjct: 95 LATLKGLKCVTEVTFA-SDRLTDTDLACIAGFEHLRSFGLRDCGRVTGAGFGVLAQLPRL 153
Query: 158 ESLNIKWCN---CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 214
KW + +TD L + L+++ + +K TD+G+ L L L +N+
Sbjct: 154 -----KWVSLVGPVTDEAGPHLGRIKTLETVVLYRTKFTDAGLKELAALPALGSVNVTAT 208
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 274
PVT + L ++ + + G E S + L L L +TD L HL
Sbjct: 209 PVTGTAF-AEPGWSRLREIDATQTAFNAAGLEAVSALPVLGTLTLDATAVTDSGLKHLAR 267
Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 334
L+ L+L + D G+ L G+ L+ L L T V + L +NL+ T
Sbjct: 268 ARALQELSLADTPVADTGVAALAGVQTLRVLNLERTGVTGAAFATFPVPAELRKLNLAET 327
Query: 335 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 389
+D S LA L +L +L+L +TD GLA L L L +LDL G + D A
Sbjct: 328 RFTDASGSHLARLPALTNLSLSGCDVTDAGLARLADLKKLANLDLTGTKAGDGAA 382
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 79/298 (26%), Positives = 135/298 (45%), Gaps = 30/298 (10%)
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
+T G A G + + +ER + L LKGL + + + +TD+D+ ++G
Sbjct: 70 VTVHGPGADGGCV----VRVERTADLAPALATLKGLKCVTEVTFA-SDRLTDTDLACIAG 124
Query: 179 LTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
+L+S + C +VT +G L L +L ++L G PVT L + +L + L R
Sbjct: 125 FEHLRSFGLRDCGRVTGAGFGVLAQLPRLKWVSLVG-PVTDEAGPHLGRIKTLETVVLYR 183
Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH-----------------------LKG 274
+ +D G ++ + + +L +N+ +T +
Sbjct: 184 TKFTDAGLKELAALPALGSVNVTATPVTGTAFAEPGWSRLREIDATQTAFNAAGLEAVSA 243
Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 334
L L +L LD+ + D GL +L L+ L L+DT V +G+ L+G+ L +NL T
Sbjct: 244 LPVLGTLTLDATAVTDSGLKHLARARALQELSLADTPVADTGVAALAGVQTLRVLNLERT 303
Query: 335 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
G++ + + L+ LNL + TD + L L LT+L L G +TD+G A L
Sbjct: 304 GVTGAAFATFPVPAELRKLNLAETRFTDASGSHLARLPALTNLSLSGCDVTDAGLARL 361
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 76/300 (25%), Positives = 126/300 (42%), Gaps = 15/300 (5%)
Query: 77 LKDCSNLQSLDFNFCIQ------------ISDGGLEHLRGLSNLTSLSFRRNNAITAQGM 124
L+DC + F Q ++D HL + L ++ R T G+
Sbjct: 133 LRDCGRVTGAGFGVLAQLPRLKWVSLVGPVTDEAGPHLGRIKTLETVVLYRTK-FTDAGL 191
Query: 125 KAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
K A L L +++ T + G G +L ++ + ++ +S L L +
Sbjct: 192 KELAALPALGSVNVT-ATPVTGTAFAEPGWSRLREIDATQ-TAFNAAGLEAVSALPVLGT 249
Query: 185 LQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 244
L + + VTDSG+ +L + L L+L PV + +L+ + +L LNL R ++
Sbjct: 250 LTLDATAVTDSGLKHLARARALQELSLADTPVADTGVAALAGVQTLRVLNLERTGVTGAA 309
Query: 245 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 304
F L+ LNL TD HL L L +L+L C + D GL L L L
Sbjct: 310 FATFPVPAELRKLNLAETRFTDASGSHLARLPALTNLSLSGCDVTDAGLARLADLKKLAN 369
Query: 305 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 364
L+L+ T+ G L LE ++ T ++D L+ A + L+ L + ++T G
Sbjct: 370 LDLTGTKAGDGAAEVAGTLAELEVVSFRGTQLTDAGLKAAAHGARLRFLYVRGSKVTKRG 429
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 80/207 (38%), Gaps = 27/207 (13%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
L + VTDSGL HL LQ L + + G
Sbjct: 252 LDATAVTDSGLKHLARARALQELSLA--------------------------DTPVADTG 285
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
+ A AG+ L L+LER +L LN+ TD+ L+ L L
Sbjct: 286 VAALAGVQTLRVLNLERTGVTGAAFATFPVPAELRKLNLAETR-FTDASGSHLARLPALT 344
Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
+L +S VTD+G+A L L+KL L+L G + L L ++ QL+D
Sbjct: 345 NLSLSGCDVTDAGLARLADLKKLANLDLTGTKAGDGAAEVAGTLAELEVVSFRGTQLTDA 404
Query: 244 GCEKFSKIGSLKVLNLGFNEITDECLV 270
G + + L+ L + +++T V
Sbjct: 405 GLKAAAHGARLRFLYVRGSKVTKRGAV 431
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 51/114 (44%), Gaps = 8/114 (7%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+L ++ LSG DVTD+GL L D L +LD + DG E L+ L +SF R
Sbjct: 341 PALTNLSLSGCDVTDAGLARLADLKKLANLDLT-GTKAGDGAAEVAGTLAELEVVSF-RG 398
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD 170
+T G+KA A L R + G V +G + + + C + +
Sbjct: 399 TQLTDAGLKAAAHGARL------RFLYVRGSKVTKRGAVDAGKVVREGCRIVAE 446
>gi|147832652|emb|CAN74892.1| hypothetical protein VITISV_002002 [Vitis vinifera]
Length = 300
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 59/75 (78%), Positives = 65/75 (86%)
Query: 320 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
+ GL NLESINLSFT ++D LRK + LSSLKSLNLDA QITD GLAALTSLTGLTHLDL
Sbjct: 113 MEGLANLESINLSFTAVTDSGLRKSSALSSLKSLNLDAHQITDAGLAALTSLTGLTHLDL 172
Query: 380 FGARITDSGAAYLRS 394
FGARITDSG +YLR+
Sbjct: 173 FGARITDSGTSYLRN 187
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 86/165 (52%), Gaps = 24/165 (14%)
Query: 148 LVNLKGLMKLESLNIKW-----------------------CNCITDSDMKPLSGLTNLKS 184
VN++GL LES+N+ + + ITD+ + L+ LT L
Sbjct: 110 FVNMEGLANLESINLSFTAVTDSGLRKSSALSSLKSLNLDAHQITDAGLAALTSLTGLTH 169
Query: 185 LQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR-CQLSDD 243
L + +++TDSG +YL+ + L L + G +T A + ++ L L LNL++ C L+D
Sbjct: 170 LDLFGARITDSGTSYLRNFKNLQSLEICGGGLTDAGVKNIKDLTCLTVLNLSQNCNLTDK 229
Query: 244 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 288
E S + +L L++ + IT+ L HLK L NL+SL LDSC +
Sbjct: 230 SLELISGLTALVSLSVSNSRITNAGLQHLKQLKNLKSLTLDSCKV 274
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 59/162 (36%), Positives = 88/162 (54%), Gaps = 2/162 (1%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L S++LS + VTDSGL S+L+SL+ + QI+D GL L L+ LT L
Sbjct: 117 ANLESINLSFTAVTDSGLRKSSALSSLKSLNLD-AHQITDAGLAALTSLTGLTHLDLF-G 174
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
IT G NL L++ G+ N+K L L LN+ +TD ++ +
Sbjct: 175 ARITDSGTSYLRNFKNLQSLEICGGGLTDAGVKNIKDLTCLTVLNLSQNCNLTDKSLELI 234
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
SGLT L SL +S S++T++G+ +LK L+ L L L+ C VT
Sbjct: 235 SGLTALVSLSVSNSRITNAGLQHLKQLKNLKSLTLDSCKVTV 276
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 80/144 (55%), Gaps = 1/144 (0%)
Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 310
+ +L+ +NL F +TD L L++L+SLNLD+ I D GL LT L L L+L
Sbjct: 116 LANLESINLSFTAVTDSGLRKSSALSSLKSLNLDAHQITDAGLAALTSLTGLTHLDLFGA 175
Query: 311 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR-QITDTGLAALT 369
++ SG +L NL+S+ + G++D ++ + L+ L LNL +TD L ++
Sbjct: 176 RITDSGTSYLRNFKNLQSLEICGGGLTDAGVKNIKDLTCLTVLNLSQNCNLTDKSLELIS 235
Query: 370 SLTGLTHLDLFGARITDSGAAYLR 393
LT L L + +RIT++G +L+
Sbjct: 236 GLTALVSLSVSNSRITNAGLQHLK 259
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 78/257 (30%), Positives = 124/257 (48%), Gaps = 29/257 (11%)
Query: 152 KGLMKLESLNIKWCNCI---TDSDMKPLSGLTNLKSLQ---------ISCSKVTDSGIAY 199
+G + LE NI W + D+ + GL +++ + I K+T S I +
Sbjct: 45 EGSLDLEKANI-WLGTLLLERSEDIYRMKGLLSVQGMDERFVFQDYLILFYKITTSLIPF 103
Query: 200 LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 259
+ L +N+EG L +L +NL+ ++D G K S + SLK LNL
Sbjct: 104 FYTI--LLFVNMEG-------------LANLESINLSFTAVTDSGLRKSSALSSLKSLNL 148
Query: 260 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 319
++ITD L L LT L L+L I D G L NL+ LE+ + +G+++
Sbjct: 149 DAHQITDAGLAALTSLTGLTHLDLFGARITDSGTSYLRNFKNLQSLEICGGGLTDAGVKN 208
Query: 320 LSGLTNLESINLSFT-GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 378
+ LT L +NLS ++D SL ++GL++L SL++ +IT+ GL L L L L
Sbjct: 209 IKDLTCLTVLNLSQNCNLTDKSLELISGLTALVSLSVSNSRITNAGLQHLKQLKNLKSLT 268
Query: 379 LFGARITDSGAAYLRSK 395
L ++T + L+SK
Sbjct: 269 LDSCKVTVNDIKKLQSK 285
>gi|434405931|ref|YP_007148816.1| Leucine Rich Repeat (LRR)-containing protein [Cylindrospermum
stagnale PCC 7417]
gi|428260186|gb|AFZ26136.1| Leucine Rich Repeat (LRR)-containing protein [Cylindrospermum
stagnale PCC 7417]
Length = 451
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 106/325 (32%), Positives = 174/325 (53%), Gaps = 29/325 (8%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
++L S+++D + L + +NL +LD +S+ + ++ LSNLT+L+ ++
Sbjct: 76 LNLESSEISD--IKPLSNLTNLTTLD------LSENQISDIKPLSNLTNLTDIDLSSNQI 127
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
+K + L NL +DL + + ++K L L +L + + SD+K LS LTN
Sbjct: 128 SDIKVLSNLTNLTDIDLSK-----NQISDIKVLSNLTNLTVLDLSDNQISDIKVLSNLTN 182
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
L S+++S ++++D I L L LT+L+L ++ + LS L +L YL+L Q+
Sbjct: 183 LTSVKLSENQISD--IEVLSNLTNLTVLDLGYNQISDIKV--LSNLTNLTYLSLWNNQIG 238
Query: 242 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN 301
D + S + +L L+L N+I+D + L LTNL SL L I D + L+ L N
Sbjct: 239 D--IKVLSNLTNLTSLSLWDNQISD--IKPLSNLTNLTSLYLWDNQISD--IKPLSNLTN 292
Query: 302 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 361
L L L D Q+ ++ LS LTNL ++LS I G ++ L+ L+SL SL+L QI
Sbjct: 293 LTYLYLWDNQIA--DIKPLSNLTNLTDLDLSKNQI--GDIKPLSNLTSLTSLDLSKNQIA 348
Query: 362 DTGLAALTSLTGLTHLDLFGARITD 386
D + L++LT LT L L+ + D
Sbjct: 349 D--IKPLSNLTNLTSLSLWRNQSID 371
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 105/296 (35%), Positives = 156/296 (52%), Gaps = 24/296 (8%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
D++D+ + +K SNL +L +++S+ + + LSNLT+L+ +K
Sbjct: 165 DLSDNQISDIKVLSNLTNL---TSVKLSENQISDIEVLSNLTNLTVLDLGYNQISDIKVL 221
Query: 128 AGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
+ L NL L L G + L L L SL++ W N I SD+KPLS LTNL SL +
Sbjct: 222 SNLTNLTYLSL--WNNQIGDIKVLSNLTNLTSLSL-WDNQI--SDIKPLSNLTNLTSLYL 276
Query: 188 SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 247
++++D I L L LT L L + A + LS L +L L+L++ Q+ D +
Sbjct: 277 WDNQISD--IKPLSNLTNLTYLYLWDNQI--ADIKPLSNLTNLTDLDLSKNQIGD--IKP 330
Query: 248 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL-DSCGIGDEGLVNLTGLCNLKCLE 306
S + SL L+L N+I D + L LTNL SL+L + I E L NLT NL L+
Sbjct: 331 LSNLTSLTSLDLSKNQIAD--IKPLSNLTNLTSLSLWRNQSIDIELLSNLT---NLTSLD 385
Query: 307 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
LS+ Q+ S ++ LS LTNL I+LS ISD ++ L+ L+ L+ L + I D
Sbjct: 386 LSENQI--SDIKPLSNLTNLTDIDLSENQISD--IKPLSNLTKLEDLQIQNNPILD 437
Score = 46.2 bits (108), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 80/160 (50%), Gaps = 34/160 (21%)
Query: 48 WMDVIA-----SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
W + IA S ++L +DLS + + D + L + ++L SLD + QI+D ++ L
Sbjct: 299 WDNQIADIKPLSNLTNLTDLDLSKNQIGD--IKPLSNLTSLTSLDLSKN-QIAD--IKPL 353
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
L+NLTSLS RN +I ++ + L NL LDL + ++K L L +L
Sbjct: 354 SNLTNLTSLSLWRNQSI---DIELLSNLTNLTSLDLS-----ENQISDIKPLSNLTNL-- 403
Query: 163 KWCNCITD--------SDMKPLSGLTNLKSLQISCSKVTD 194
TD SD+KPLS LT L+ LQI + + D
Sbjct: 404 ------TDIDLSENQISDIKPLSNLTKLEDLQIQNNPILD 437
>gi|149174147|ref|ZP_01852775.1| hypothetical protein PM8797T_13198 [Planctomyces maris DSM 8797]
gi|148847127|gb|EDL61462.1| hypothetical protein PM8797T_13198 [Planctomyces maris DSM 8797]
Length = 476
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 105/198 (53%), Gaps = 20/198 (10%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
+ +TD ++ + + L +S SKVTD+GI YL+G +L LNL G VT A L+ L
Sbjct: 265 SAVTDQILRDFNYWNKVSGLWLSRSKVTDAGIEYLRGATRLYSLNLSGTEVTDATLEHLK 324
Query: 226 ALGSLFYLNLNRCQLSDDGC-EKFSKIGSLKV-----------------LNLGFNEITDE 267
L L +NL Q+S G E + S+++ L L +T E
Sbjct: 325 GLPELHSVNLRGTQVSPRGVLELIASSDSMQIAFPGGWVWKLENAHGFQLKLSSPAVTGE 384
Query: 268 CLVHLKGLTNLES-LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 326
L+ L G +++ L+LD + DEGL +L G +L+ L +S+TQ+ S+GL HL+GL +L
Sbjct: 385 -LLKLFGTVRVQAYLDLDGIALTDEGLASLGGFEDLRTLRISNTQISSAGLNHLAGLASL 443
Query: 327 ESINLSFTGISDGSLRKL 344
++L + ++D + KL
Sbjct: 444 RELDLRGSAVADEDINKL 461
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 62/246 (25%), Positives = 115/246 (46%), Gaps = 23/246 (9%)
Query: 22 EVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCS 81
E+S+ FRD + L + V D+ + + + + + LS S VTD+G+ +L+ +
Sbjct: 248 EISMVEFRDTGFESLG---HSAVTDQILRDF-NYWNKVSGLWLSRSKVTDAGIEYLRGAT 303
Query: 82 NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC 141
L SL+ + +++D LEHL+GL L S++ R + G++ L+
Sbjct: 304 RLYSLNLS-GTEVTDATLEHLKGLPELHSVNLRGTQV-------SPRGVLELIASSDSMQ 355
Query: 142 TRIHGGLVNLKGLMKLES---LNIKWCNCITDSDMKPLSGLTNLKS-LQISCSKVTDSGI 197
GG V KLE+ +K + ++ L G +++ L + +TD G+
Sbjct: 356 IAFPGGWV-----WKLENAHGFQLKLSSPAVTGELLKLFGTVRVQAYLDLDGIALTDEGL 410
Query: 198 AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 257
A L G + L L + +++A L+ L+ L SL L+L ++D+ K + +L
Sbjct: 411 ASLGGFEDLRTLRISNTQISSAGLNHLAGLASLRELDLRGSAVADEDINKLQR--ALPNC 468
Query: 258 NLGFNE 263
+ +NE
Sbjct: 469 KIDWNE 474
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 76/161 (47%), Gaps = 6/161 (3%)
Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
+ +L ++D F+ + L L +++TD + +L+G T L SLNL + D
Sbjct: 259 FESLGHSAVTDQILRDFNYWNKVSGLWLSRSKVTDAGIEYLRGATRLYSLNLSGTEVTDA 318
Query: 292 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 351
L +L GL L + L TQV G+ L + + +S+ ++F G G + KL +
Sbjct: 319 TLEHLKGLPELHSVNLRGTQVSPRGVLEL--IASSDSMQIAFPG---GWVWKLENAHGFQ 373
Query: 352 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
L L + +T L ++ +LDL G +TD G A L
Sbjct: 374 -LKLSSPAVTGELLKLFGTVRVQAYLDLDGIALTDEGLASL 413
>gi|410684076|ref|YP_006060083.1| leucine-rich-repeat type III effector protein (GALA1-like)
[Ralstonia solanacearum CMR15]
gi|299068565|emb|CBJ39793.1| leucine-rich-repeat type III effector protein (GALA1-like)
[Ralstonia solanacearum CMR15]
Length = 555
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 102/371 (27%), Positives = 173/371 (46%), Gaps = 18/371 (4%)
Query: 17 SRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSV-------DLSGSDV 69
SRC +++ L +L L + V + W I +G+ LL+ +++ + +
Sbjct: 162 SRCGRQITAAGI--AHLSELPLAEL-NVRNNW---IGDEGARLLAAHPTLTTLNVASNGI 215
Query: 70 TDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAG 129
D+G L + L+SLD +F +I G++ L + L +L+ N+ I G A A
Sbjct: 216 GDAGAQALAANTRLESLDISFN-EIGSDGVQALADNATLKTLNISSND-IGDAGALALAV 273
Query: 130 LINLVKLDLERCTRIH-GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
L +L+ C RI G L L SL+I N D+ ++ ++ T L+ L IS
Sbjct: 274 NTTLTELNTS-CNRISDAGAQALANSDSLTSLDIS-DNGFGDAGVQAIAANTRLRRLDIS 331
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 248
++++++G+ + LT L + C + A +L+A L L+ + +G +
Sbjct: 332 RNRLSEAGVLAVAANTTLTKLCIADCEIGTAGAQALAANTRLVSLDAGHNGIGTEGAQAL 391
Query: 249 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 308
++ +LK LNL N I D V L SLNL C + D GL L L+ L +S
Sbjct: 392 ARHATLKQLNLEKNPIGDAGAVAFADNATLRSLNLKGCKVTDSGLRVLATNATLRTLNVS 451
Query: 309 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 368
D ++ + G + + + L S+++S GI D LA + L LN+ +T G+ AL
Sbjct: 452 DNRITAEGAKATAANSTLTSLDVSHNGIEDEGALALAANTVLNVLNICYNALTVKGVTAL 511
Query: 369 TSLTGLTHLDL 379
+ T L LD+
Sbjct: 512 AASTTLAVLDI 522
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 112/374 (29%), Positives = 173/374 (46%), Gaps = 21/374 (5%)
Query: 25 LEAFRD----CALQDLCL-GQYPGVNDKWMDVIASQGSSLLSVDLS--GSDVTDSGLIHL 77
L+A RD AL+ L L G++ + +A+ +SL ++DLS G +T +G+ HL
Sbjct: 123 LQALRDTEGYAALESLTLEGRFTDED------LATLPASLKALDLSRCGRQITAAGIAHL 176
Query: 78 KDCSNLQSLDF--NFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135
+ L L+ N+ I D G L LT+L+ +N I G +A A L
Sbjct: 177 SELP-LAELNVRNNW---IGDEGARLLAAHPTLTTLNVA-SNGIGDAGAQALAANTRLES 231
Query: 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS 195
LD+ G+ L L++LNI N I D+ L+ T L L SC++++D+
Sbjct: 232 LDISFNEIGSDGVQALADNATLKTLNIS-SNDIGDAGALALAVNTTLTELNTSCNRISDA 290
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G L LT L++ A + +++A L L+++R +LS+ G + +L
Sbjct: 291 GAQALANSDSLTSLDISDNGFGDAGVQAIAANTRLRRLDISRNRLSEAGVLAVAANTTLT 350
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 315
L + EI L T L SL+ GIG EG L LK L L +G +
Sbjct: 351 KLCIADCEIGTAGAQALAANTRLVSLDAGHNGIGTEGAQALARHATLKQLNLEKNPIGDA 410
Query: 316 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 375
G + L S+NL ++D LR LA ++L++LN+ +IT G A + + LT
Sbjct: 411 GAVAFADNATLRSLNLKGCKVTDSGLRVLATNATLRTLNVSDNRITAEGAKATAANSTLT 470
Query: 376 HLDLFGARITDSGA 389
LD+ I D GA
Sbjct: 471 SLDVSHNGIEDEGA 484
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 83/298 (27%), Positives = 136/298 (45%), Gaps = 4/298 (1%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++++S +D+ D+G + L + L L+ + C +ISD G + L +LTSL +
Sbjct: 251 ATLKTLNISSNDIGDAGALALAVNTTLTELNTS-CNRISDAGAQALANSDSLTSLDIS-D 308
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N G++A A L +LD+ R G++ + L L I C I + + L
Sbjct: 309 NGFGDAGVQAIAANTRLRRLDISRNRLSEAGVLAVAANTTLTKLCIADCE-IGTAGAQAL 367
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ T L SL + + G L L LNLE P+ A + + +L LNL
Sbjct: 368 AANTRLVSLDAGHNGIGTEGAQALARHATLKQLNLEKNPIGDAGAVAFADNATLRSLNLK 427
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
C+++D G + +L+ LN+ N IT E + L SL++ GI DEG + L
Sbjct: 428 GCKVTDSGLRVLATNATLRTLNVSDNRITAEGAKATAANSTLTSLDVSHNGIEDEGALAL 487
Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL-AGLSSLKSL 353
L L + + G+ L+ T L +++ G S R L A + LK+L
Sbjct: 488 AANTVLNVLNICYNALTVKGVTALAASTTLAVLDIRENGYSATIERALQAAVPQLKAL 545
>gi|290974856|ref|XP_002670160.1| predicted protein [Naegleria gruberi]
gi|284083716|gb|EFC37416.1| predicted protein [Naegleria gruberi]
Length = 376
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 71/264 (26%), Positives = 136/264 (51%), Gaps = 5/264 (1%)
Query: 130 LINLVKLDLERCTRIHGGLVNLKGLMK-LESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
L N+ L LER R + GLMK L L+ + NCI +K + + NL L I
Sbjct: 35 LENIENLRLERNNRFFD--CQIIGLMKGLTVLSAE--NCIGTEGVKHICKMNNLTKLNIE 90
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 248
+++ + G Y+ +++LT LN+ + ++ +S L +L L + C++ D+G +
Sbjct: 91 RNEIGEEGAKYISKMKQLTELNVGWNGIGKEGVEFISELKNLTLLEIEACRICDEGAKSI 150
Query: 249 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 308
S++ L LN+ +N I++ +L L L L L C I +EG ++ L L L++S
Sbjct: 151 SELKQLTHLNISYNNISNLGSKYLTELKQLTVLTLCDCNISEEGCKYISELNQLTDLDIS 210
Query: 309 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 368
+ +G +G+ ++SG+ L + + T + L+K++ + + +LN+ + D G +
Sbjct: 211 NNDIGCNGVEYISGMKQLLFLYIYGTNMYPTELQKISEMKQVTNLNISWNYVGDEGAKYI 270
Query: 369 TSLTGLTHLDLFGARITDSGAAYL 392
+ + LT L++ + I+ GA ++
Sbjct: 271 SDMKQLTKLEVVRSDISTEGAKHI 294
Score = 87.8 bits (216), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 77/317 (24%), Positives = 145/317 (45%), Gaps = 30/317 (9%)
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
++GL+ L++ N I +G+K + NL KL++ER G + + +L LN
Sbjct: 58 MKGLTVLSA-----ENCIGTEGVKHICKMNNLTKLNIERNEIGEEGAKYISKMKQLTELN 112
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 221
+ W N I ++ +S L NL L+I ++ D G + L++LT LN+ ++
Sbjct: 113 VGW-NGIGKEGVEFISELKNLTLLEIEACRICDEGAKSISELKQLTHLNISYNNISNLGS 171
Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL--- 278
L+ L L L L C +S++GC+ S++ L L++ N+I + ++ G+ L
Sbjct: 172 KYLTELKQLTVLTLCDCNISEEGCKYISELNQLTDLDISNNDIGCNGVEYISGMKQLLFL 231
Query: 279 ---------------------ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 317
+LN+ +GDEG ++ + L LE+ + + + G
Sbjct: 232 YIYGTNMYPTELQKISEMKQVTNLNISWNYVGDEGAKYISDMKQLTKLEVVRSDISTEGA 291
Query: 318 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 377
+H+S L L +N+ I ++ ++ L+ L++ I G ++ + LTHL
Sbjct: 292 KHISELKQLTDLNIGENNIGGEGAIAISKMNQLRILDISDNNIGGIGAEHVSQMKQLTHL 351
Query: 378 DLFGARITDSGAAYLRS 394
D+ I + GA + +
Sbjct: 352 DISHNCIGNYGAKRINT 368
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/296 (24%), Positives = 139/296 (46%), Gaps = 25/296 (8%)
Query: 72 SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLI 131
G+ H+ +NL L+ +I + G +++ + LT L+ N I +G++ + L
Sbjct: 73 EGVKHICKMNNLTKLNIERN-EIGEEGAKYISKMKQLTELNVGWN-GIGKEGVEFISELK 130
Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW----------------------CNC-I 168
NL L++E C G ++ L +L LNI + C+C I
Sbjct: 131 NLTLLEIEACRICDEGAKSISELKQLTHLNISYNNISNLGSKYLTELKQLTVLTLCDCNI 190
Query: 169 TDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG 228
++ K +S L L L IS + + +G+ Y+ G+++L L + G + L +S +
Sbjct: 191 SEEGCKYISELNQLTDLDISNNDIGCNGVEYISGMKQLLFLYIYGTNMYPTELQKISEMK 250
Query: 229 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 288
+ LN++ + D+G + S + L L + ++I+ E H+ L L LN+ I
Sbjct: 251 QVTNLNISWNYVGDEGAKYISDMKQLTKLEVVRSDISTEGAKHISELKQLTDLNIGENNI 310
Query: 289 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 344
G EG + ++ + L+ L++SD +G G H+S + L +++S I + +++
Sbjct: 311 GGEGAIAISKMNQLRILDISDNNIGGIGAEHVSQMKQLTHLDISHNCIGNYGAKRI 366
>gi|218196286|gb|EEC78713.1| hypothetical protein OsI_18882 [Oryza sativa Indica Group]
Length = 601
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 116/423 (27%), Positives = 192/423 (45%), Gaps = 68/423 (16%)
Query: 25 LEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNL 83
LE F+ +++++ L + V+ +W+ + + L + L+ +V S + L S L
Sbjct: 65 LEVFQH-SVEEIDLSGHIAVDAEWLAYLGA-FRYLRVLKLADCKNVNSSAVWALSGMSTL 122
Query: 84 QSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTR 143
+ LD + C +ISD G++H+ + +L L + +T G+ A + LINL LDL
Sbjct: 123 KELDLSRCSKISDAGIKHIASIESLEKLHVSQT-GLTDNGVMAISSLINLRLLDLGGVRF 181
Query: 144 IHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGL 203
L +L+ L +LE L+I W + IT+ L T+L L IS ++VT L L
Sbjct: 182 TDKALRSLQVLTQLEHLDI-WGSEITNEGASVLIAFTSLSFLNISWTRVT-----CLPIL 235
Query: 204 QKLTLLNLEGCPVTAAC-------------LDSLSALG------------SLFYLNLNRC 238
L LN+ C + + C + S ++ G SL YL+++ C
Sbjct: 236 LTLRCLNMSNCTIHSICNGEFQVLIHLEKLVISAASFGNIDEVFSSILPSSLTYLDMSSC 295
Query: 239 QLSD----------------------DGCEKFSKIG-SLKVLNLGFNEITDECLVHLKG- 274
S+ D E + IG +L L+L +E+T + L L G
Sbjct: 296 SSSNLYFLGNMRNLEHLDLSYSRIISDAIEYIANIGMNLMFLSLSNSEVTSQALCVLAGT 355
Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT---------QVGSSGLRHLSGLTN 325
+ +L +L+L I D L+ ++ + +L+ L LS T V L L L
Sbjct: 356 VPSLTTLSLAHTKIDDSALLYISMMPSLRILNLSRTCIKGFMMENSVKVLSLSALEELKY 415
Query: 326 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
LES+NL+ T + D + LA +LK L L + ++D L AL+S + L HL G ++
Sbjct: 416 LESLNLNNTQLMDDVIPPLASFRALKYLFLKSDFLSDPALHALSSASNLIHLGFCGNILS 475
Query: 386 DSG 388
+G
Sbjct: 476 TTG 478
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 77/299 (25%), Positives = 140/299 (46%), Gaps = 27/299 (9%)
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLV-NLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ A+ + L L L C ++ V L G+ L+ L++ C+ I+D+ +K +
Sbjct: 82 AVDAEWLAYLGAFRYLRVLKLADCKNVNSSAVWALSGMSTLKELDLSRCSKISDAGIKHI 141
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ + +L+ L +S + +TD+G+ + L L LL+L G T L SL L L +L++
Sbjct: 142 ASIESLEKLHVSQTGLTDNGVMAISSLINLRLLDLGGVRFTDKALRSLQVLTQLEHLDIW 201
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEIT-------------DECLVH------LKGLTN 277
+++++G SL LN+ + +T C +H + L +
Sbjct: 202 GSEITNEGASVLIAFTSLSFLNISWTRVTCLPILLTLRCLNMSNCTIHSICNGEFQVLIH 261
Query: 278 LESLNLDSCGIG--DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 335
LE L + + G DE ++ +L L++S SS L L + NLE ++LS++
Sbjct: 262 LEKLVISAASFGNIDEVFSSILP-SSLTYLDMSS--CSSSNLYFLGNMRNLEHLDLSYSR 318
Query: 336 ISDGSLRKLAGLS-SLKSLNLDARQITDTGLAALT-SLTGLTHLDLFGARITDSGAAYL 392
I ++ +A + +L L+L ++T L L ++ LT L L +I DS Y+
Sbjct: 319 IISDAIEYIANIGMNLMFLSLSNSEVTSQALCVLAGTVPSLTTLSLAHTKIDDSALLYI 377
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 78/135 (57%), Gaps = 2/135 (1%)
Query: 260 GFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGL 317
G + E L +L L L L C + + L+G+ LK L+LS +++ +G+
Sbjct: 79 GHIAVDAEWLAYLGAFRYLRVLKLADCKNVNSSAVWALSGMSTLKELDLSRCSKISDAGI 138
Query: 318 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 377
+H++ + +LE +++S TG++D + ++ L +L+ L+L + TD L +L LT L HL
Sbjct: 139 KHIASIESLEKLHVSQTGLTDNGVMAISSLINLRLLDLGGVRFTDKALRSLQVLTQLEHL 198
Query: 378 DLFGARITDSGAAYL 392
D++G+ IT+ GA+ L
Sbjct: 199 DIWGSEITNEGASVL 213
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 102/381 (26%), Positives = 169/381 (44%), Gaps = 67/381 (17%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
L++L L + ++D + IAS SL + +S + +TD+G++ + NL+ LD +
Sbjct: 122 LKELDLSRCSKISDAGIKHIASI-ESLEKLHVSQTGLTDNGVMAISSLINLRLLDLG-GV 179
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQG---MKAFAGL----------------INL 133
+ +D L L+ L+ L L + IT +G + AF L + L
Sbjct: 180 RFTDKALRSLQVLTQLEHLDIW-GSEITNEGASVLIAFTSLSFLNISWTRVTCLPILLTL 238
Query: 134 VKLDLERCTRIHG-------GLVNLKGLM-------------------KLESLNIKWCNC 167
L++ CT IH L++L+ L+ L L++ C
Sbjct: 239 RCLNMSNCT-IHSICNGEFQVLIHLEKLVISAASFGNIDEVFSSILPSSLTYLDMSSC-- 295
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGL-QKLTLLNLEGCPVTAACLDSLS- 225
+ S++ L + NL+ L +S S++ I Y+ + L L+L VT+ L L+
Sbjct: 296 -SSSNLYFLGNMRNLEHLDLSYSRIISDAIEYIANIGMNLMFLSLSNSEVTSQALCVLAG 354
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL------GF---NEITDECLVHLKGLT 276
+ SL L+L ++ D S + SL++LNL GF N + L L+ L
Sbjct: 355 TVPSLTTLSLAHTKIDDSALLYISMMPSLRILNLSRTCIKGFMMENSVKVLSLSALEELK 414
Query: 277 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG- 335
LESLNL++ + D+ + L LK L L + L LS +NL I+L F G
Sbjct: 415 YLESLNLNNTQLMDDVIPPLASFRALKYLFLKSDFLSDPALHALSSASNL--IHLGFCGN 472
Query: 336 -ISDGSLRKLAGLSSLKSLNL 355
+S LRK ++L+ L+L
Sbjct: 473 ILSTTGLRKFVPPATLRMLDL 493
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 75/302 (24%), Positives = 124/302 (41%), Gaps = 75/302 (24%)
Query: 30 DCALQDLCLGQYPGVN--DKWMDVIASQG------SSLLSVDLSGSDVTD---SGLIHLK 78
+C + +C G++ + +K + AS G SS+L L+ D++ S L L
Sbjct: 245 NCTIHSICNGEFQVLIHLEKLVISAASFGNIDEVFSSILPSSLTYLDMSSCSSSNLYFLG 304
Query: 79 DCSNLQSLDFNFCIQISDGGLEHLRGLS-NLTSLSFRRNNAITAQGMKAFAGLINLVKLD 137
+ NL+ LD ++ ISD +E++ + NL LS N+ +T+Q + AG +
Sbjct: 305 NMRNLEHLDLSYSRIISDA-IEYIANIGMNLMFLSLS-NSEVTSQALCVLAGTV------ 356
Query: 138 LERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGI 197
+L +L ++ +K+ DS +
Sbjct: 357 ------------------------------------------PSLTTLSLAHTKIDDSAL 374
Query: 198 AYLKGLQKLTLLNLEGCPVTAACLD------SLSALGSLFYL---NLNRCQLSDDGCEKF 248
Y+ + L +LNL + ++ SLSAL L YL NLN QL DD
Sbjct: 375 LYISMMPSLRILNLSRTCIKGFMMENSVKVLSLSALEELKYLESLNLNNTQLMDDVIPPL 434
Query: 249 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG--IGDEGLVNLTGLCNLKCLE 306
+ +LK L L + ++D L L +NL ++L CG + GL L+ L+
Sbjct: 435 ASFRALKYLFLKSDFLSDPALHALSSASNL--IHLGFCGNILSTTGLRKFVPPATLRMLD 492
Query: 307 LS 308
LS
Sbjct: 493 LS 494
>gi|290974572|ref|XP_002670019.1| leucine-rich repeat protein [Naegleria gruberi]
gi|284083573|gb|EFC37275.1| leucine-rich repeat protein [Naegleria gruberi]
Length = 334
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 109/189 (57%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
N I D +K +S L L SL +S +++ D G+ + L++LT L++ + A + S+S
Sbjct: 145 NGIGDEGVKLISELKQLTSLNMSNNRIGDEGVKLISELKQLTSLDISLNDIGAEGVKSIS 204
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
+ L LN+N ++ D+G + S++ L LN+ N I DE + + + L SLN+ +
Sbjct: 205 EMKQLTSLNINYNRIGDEGVKLISELKQLTSLNISNNGIGDEGVKLISEMKQLTSLNISN 264
Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 345
GIGDEG+ +++ L L L +S+ ++G+ G + +S + L S+++++ I D ++ ++
Sbjct: 265 NGIGDEGVKSISELKQLTSLNISNNRIGAEGAKSISEMKQLTSLSINYNQIGDEGVKSIS 324
Query: 346 GLSSLKSLN 354
+ L SLN
Sbjct: 325 DMKQLTSLN 333
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 111/205 (54%)
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
K +S + L SL IS + + D G+ + L++LT LN+ + + +S L L L
Sbjct: 129 KFISEMKQLTSLIISDNGIGDEGVKLISELKQLTSLNMSNNRIGDEGVKLISELKQLTSL 188
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+++ + +G + S++ L LN+ +N I DE + + L L SLN+ + GIGDEG+
Sbjct: 189 DISLNDIGAEGVKSISEMKQLTSLNINYNRIGDEGVKLISELKQLTSLNISNNGIGDEGV 248
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
++ + L L +S+ +G G++ +S L L S+N+S I + ++ + L SL
Sbjct: 249 KLISEMKQLTSLNISNNGIGDEGVKSISELKQLTSLNISNNRIGAEGAKSISEMKQLTSL 308
Query: 354 NLDARQITDTGLAALTSLTGLTHLD 378
+++ QI D G+ +++ + LT L+
Sbjct: 309 SINYNQIGDEGVKSISDMKQLTSLN 333
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 102/195 (52%)
Query: 198 AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 257
++ +++LT L + + + +S L L LN++ ++ D+G + S++ L L
Sbjct: 129 KFISEMKQLTSLIISDNGIGDEGVKLISELKQLTSLNMSNNRIGDEGVKLISELKQLTSL 188
Query: 258 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 317
++ N+I E + + + L SLN++ IGDEG+ ++ L L L +S+ +G G+
Sbjct: 189 DISLNDIGAEGVKSISEMKQLTSLNINYNRIGDEGVKLISELKQLTSLNISNNGIGDEGV 248
Query: 318 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 377
+ +S + L S+N+S GI D ++ ++ L L SLN+ +I G +++ + LT L
Sbjct: 249 KLISEMKQLTSLNISNNGIGDEGVKSISELKQLTSLNISNNRIGAEGAKSISEMKQLTSL 308
Query: 378 DLFGARITDSGAAYL 392
+ +I D G +
Sbjct: 309 SINYNQIGDEGVKSI 323
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 100/216 (46%), Gaps = 28/216 (12%)
Query: 43 GVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
G+ D+ + +I S+ L S+++S + + D G+ + + L SLD +
Sbjct: 146 GIGDEGVKLI-SELKQLTSLNMSNNRIGDEGVKLISELKQLTSLDISL------------ 192
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
N I A+G+K+ + + L L++ G+ + L +L SLNI
Sbjct: 193 --------------NDIGAEGVKSISEMKQLTSLNINYNRIGDEGVKLISELKQLTSLNI 238
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
N I D +K +S + L SL IS + + D G+ + L++LT LN+ + A
Sbjct: 239 S-NNGIGDEGVKLISEMKQLTSLNISNNGIGDEGVKSISELKQLTSLNISNNRIGAEGAK 297
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 258
S+S + L L++N Q+ D+G + S + L LN
Sbjct: 298 SISEMKQLTSLSINYNQIGDEGVKSISDMKQLTSLN 333
>gi|290999929|ref|XP_002682532.1| predicted protein [Naegleria gruberi]
gi|284096159|gb|EFC49788.1| predicted protein [Naegleria gruberi]
Length = 339
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 83/294 (28%), Positives = 138/294 (46%), Gaps = 2/294 (0%)
Query: 99 LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158
+ HL GL L SL + I +G++ + L L LD+ H G L L +L
Sbjct: 44 VHHLSGLKQLKSLHIY-GSQIRGEGVRYISELKQLTNLDIRSHNIFHIGAKYLSELKQLT 102
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
+LNI + N I K +S L L +L I+ + + G YL L++LT L + +
Sbjct: 103 TLNI-YGNHIGAKGSKYISELNQLTTLFIAENSIGVEGAKYLSELKQLTNLGISVNWLGN 161
Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 278
L +S + L L+++ + +G + ++ L +LN+ N+I DE L ++ L L
Sbjct: 162 EGLAYVSKIKQLTILDISHNDIGAEGGKHLGELKQLTLLNISHNKIQDEGLENIGKLKQL 221
Query: 279 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
+L ++ IG EG L+ L L L +SD ++G G +++ L L + ++ I +
Sbjct: 222 TTLIINQNDIGAEGAQYLSELKQLTFLNISDNRIGDEGSKYIGELKQLVDLYINDNDIGE 281
Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
+ L L L LN+ + D G ++ L LT LD+ I D G +L
Sbjct: 282 EGAKYLRDLKQLIYLNVGGNEFGDEGAKYISELKQLTKLDINNNSIGDEGTKHL 335
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 70/242 (28%), Positives = 115/242 (47%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
K L+ ++SL + ++ LSGL LKSL I S++ G+ Y+ L++LT L+
Sbjct: 22 FKKLILMKSLTKLVIRIEEEEEVHHLSGLKQLKSLHIYGSQIRGEGVRYISELKQLTNLD 81
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
+ + LS L L LN+ + G + S++ L L + N I E
Sbjct: 82 IRSHNIFHIGAKYLSELKQLTTLNIYGNHIGAKGSKYISELNQLTTLFIAENSIGVEGAK 141
Query: 271 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 330
+L L L +L + +G+EGL ++ + L L++S +G+ G +HL L L +N
Sbjct: 142 YLSELKQLTNLGISVNWLGNEGLAYVSKIKQLTILDISHNDIGAEGGKHLGELKQLTLLN 201
Query: 331 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 390
+S I D L + L L +L ++ I G L+ L LT L++ RI D G+
Sbjct: 202 ISHNKIQDEGLENIGKLKQLTTLIINQNDIGAEGAQYLSELKQLTFLNISDNRIGDEGSK 261
Query: 391 YL 392
Y+
Sbjct: 262 YI 263
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 85/301 (28%), Positives = 136/301 (45%), Gaps = 13/301 (4%)
Query: 76 HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135
HL L+SL + QI G+ ++ L LT+L R +N I G K + L L
Sbjct: 46 HLSGLKQLKSLHI-YGSQIRGEGVRYISELKQLTNLDIRSHN-IFHIGAKYLSELKQLTT 103
Query: 136 LDLERCTRIHGGLVNLKGLMKLESLN-----IKWCNCITDSDMKPLSGLTNLKSLQISCS 190
L+ I+G + KG + LN N I K LS L L +L IS +
Sbjct: 104 LN------IYGNHIGAKGSKYISELNQLTTLFIAENSIGVEGAKYLSELKQLTNLGISVN 157
Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 250
+ + G+AY+ +++LT+L++ + A L L L LN++ ++ D+G E K
Sbjct: 158 WLGNEGLAYVSKIKQLTILDISHNDIGAEGGKHLGELKQLTLLNISHNKIQDEGLENIGK 217
Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 310
+ L L + N+I E +L L L LN+ IGDEG + L L L ++D
Sbjct: 218 LKQLTTLIINQNDIGAEGAQYLSELKQLTFLNISDNRIGDEGSKYIGELKQLVDLYINDN 277
Query: 311 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 370
+G G ++L L L +N+ D + ++ L L L+++ I D G L+
Sbjct: 278 DIGEEGAKYLRDLKQLIYLNVGGNEFGDEGAKYISELKQLTKLDINNNSIGDEGTKHLSE 337
Query: 371 L 371
+
Sbjct: 338 M 338
>gi|87309359|ref|ZP_01091495.1| hypothetical protein DSM3645_22189 [Blastopirellula marina DSM
3645]
gi|87287998|gb|EAQ79896.1| hypothetical protein DSM3645_22189 [Blastopirellula marina DSM
3645]
Length = 351
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 78/250 (31%), Positives = 119/250 (47%), Gaps = 4/250 (1%)
Query: 142 TRIHGGLVNLKGL---MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIA 198
+R+ V+ +GL + L L+++ +TD L+ LT L+SL + +T +
Sbjct: 58 SRVVATDVDFRGLGEAVTLRKLSLQDVG-MTDESASELAPLTKLQSLDMRGVSITGEALQ 116
Query: 199 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 258
L L +L L G P+ A L L+ L L L L+ S G E LK L
Sbjct: 117 SLGQLTELERLLFRGQPIRDADLAQLAPLTKLKVLGLDDTDASAGGLEHLQNAHDLKELY 176
Query: 259 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 318
L DE L L L L L + G+ L + +L+ L++S+T+V +G
Sbjct: 177 LFNTPTVDEELAVLTKFPALAKLRLRGSDVTGSGMAELAKIGSLEDLDVSETKVDDAGAA 236
Query: 319 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 378
++ L L +NL T ++D SL LA L++L+ LNLDA +TD LA L ++ L L
Sbjct: 237 EIAKLPKLTDLNLWKTKVTDASLPDLAKLTTLERLNLDANDLTDANLALLAAMPNLKWLH 296
Query: 379 LFGARITDSG 388
L +TD+G
Sbjct: 297 LGSTSVTDAG 306
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 83/286 (29%), Positives = 135/286 (47%), Gaps = 5/286 (1%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S + + +DLS TD L + L+ L + ++D L L+ L SL
Sbjct: 47 SSSKAPIGMDLSRVVATDVDFRGLGEAVTLRKLSLQ-DVGMTDESASELAPLTKLQSLDM 105
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGG-LVNLKGLMKLESLNIKWCNCITDSD 172
R +IT + +++ L L +L L R I L L L KL+ L + + +
Sbjct: 106 R-GVSITGEALQSLGQLTELERL-LFRGQPIRDADLAQLAPLTKLKVLGLDDTDA-SAGG 162
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
++ L +LK L + + D +A L L L L G VT + + L+ +GSL
Sbjct: 163 LEHLQNAHDLKELYLFNTPTVDEELAVLTKFPALAKLRLRGSDVTGSGMAELAKIGSLED 222
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
L+++ ++ D G + +K+ L LNL ++TD L L LT LE LNLD+ + D
Sbjct: 223 LDVSETKVDDAGAAEIAKLPKLTDLNLWKTKVTDASLPDLAKLTTLERLNLDANDLTDAN 282
Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
L L + NLK L L T V +G+ L+ +LE++ ++ T ++D
Sbjct: 283 LALLAAMPNLKWLHLGSTSVTDAGILELAKSKSLETLIVTRTKVTD 328
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 77/265 (29%), Positives = 123/265 (46%), Gaps = 4/265 (1%)
Query: 127 FAGL---INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
F GL + L KL L+ L L KL+SL+++ + IT ++ L LT L+
Sbjct: 67 FRGLGEAVTLRKLSLQDVGMTDESASELAPLTKLQSLDMRGVS-ITGEALQSLGQLTELE 125
Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
L + D+ +A L L KL +L L+ +A L+ L L L L D+
Sbjct: 126 RLLFRGQPIRDADLAQLAPLTKLKVLGLDDTDASAGGLEHLQNAHDLKELYLFNTPTVDE 185
Query: 244 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 303
+K +L L L +++T + L + +LE L++ + D G + L L
Sbjct: 186 ELAVLTKFPALAKLRLRGSDVTGSGMAELAKIGSLEDLDVSETKVDDAGAAEIAKLPKLT 245
Query: 304 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 363
L L T+V + L L+ LT LE +NL ++D +L LA + +LK L+L + +TD
Sbjct: 246 DLNLWKTKVTDASLPDLAKLTTLERLNLDANDLTDANLALLAAMPNLKWLHLGSTSVTDA 305
Query: 364 GLAALTSLTGLTHLDLFGARITDSG 388
G+ L L L + ++TD G
Sbjct: 306 GILELAKSKSLETLIVTRTKVTDDG 330
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/224 (30%), Positives = 103/224 (45%)
Query: 169 TDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG 228
TD D + L L+ L + +TD + L L KL L++ G +T L SL L
Sbjct: 63 TDVDFRGLGEAVTLRKLSLQDVGMTDESASELAPLTKLQSLDMRGVSITGEALQSLGQLT 122
Query: 229 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 288
L L + D + + + LKVL L + + L HL+ +L+ L L +
Sbjct: 123 ELERLLFRGQPIRDADLAQLAPLTKLKVLGLDDTDASAGGLEHLQNAHDLKELYLFNTPT 182
Query: 289 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 348
DE L LT L L L + V SG+ L+ + +LE +++S T + D ++A L
Sbjct: 183 VDEELAVLTKFPALAKLRLRGSDVTGSGMAELAKIGSLEDLDVSETKVDDAGAAEIAKLP 242
Query: 349 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
L LNL ++TD L L LT L L+L +TD+ A L
Sbjct: 243 KLTDLNLWKTKVTDASLPDLAKLTTLERLNLDANDLTDANLALL 286
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 67/246 (27%), Positives = 114/246 (46%), Gaps = 1/246 (0%)
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
+T + A L L LD+ + L +L L +LE L + I D+D+ L+
Sbjct: 86 MTDESASELAPLTKLQSLDMRGVSITGEALQSLGQLTELERLLFR-GQPIRDADLAQLAP 144
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
LT LK L + + + G+ +L+ L L L P L L+ +L L L
Sbjct: 145 LTKLKVLGLDDTDASAGGLEHLQNAHDLKELYLFNTPTVDEELAVLTKFPALAKLRLRGS 204
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
++ G + +KIGSL+ L++ ++ D + L L LNL + D L +L
Sbjct: 205 DVTGSGMAELAKIGSLEDLDVSETKVDDAGAAEIAKLPKLTDLNLWKTKVTDASLPDLAK 264
Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
L L+ L L + + L L+ + NL+ ++L T ++D + +LA SL++L +
Sbjct: 265 LTTLERLNLDANDLTDANLALLAAMPNLKWLHLGSTSVTDAGILELAKSKSLETLIVTRT 324
Query: 359 QITDTG 364
++TD G
Sbjct: 325 KVTDDG 330
>gi|87307769|ref|ZP_01089912.1| serine/threonine protein kinase [Blastopirellula marina DSM 3645]
gi|87289383|gb|EAQ81274.1| serine/threonine protein kinase [Blastopirellula marina DSM 3645]
Length = 1283
Score = 95.5 bits (236), Expect = 4e-17, Method: Composition-based stats.
Identities = 96/416 (23%), Positives = 165/416 (39%), Gaps = 60/416 (14%)
Query: 9 QIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMD------------------ 50
++ N ++++ +T AF DC LQ + L P V D+W+
Sbjct: 855 KVTNLMLWATPITREDFLAFADCKLQGVLLSYTP-VKDEWLTHLTHPEAFTDLGFSFTQI 913
Query: 51 ----VIASQGS-SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGL 105
+ A Q S ++++ L + +TD GL + DC L+S+ ++D G+ +
Sbjct: 914 GDEGLAAFQNSKKIVNLHLEHTKITDVGLAYFHDCRELKSIRLR-QTSVTDAGVLPFKHC 972
Query: 106 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH------------------GG 147
S L LS N +TA ++ + K+ + + GG
Sbjct: 973 SKLEELSLATTN-VTAAAVEELRAALPNCKITWDGDAKTESPEEKNSDNLAAKYVLSIGG 1031
Query: 148 LVNLKG--------------LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS-KV 192
+V L G +L +N C TD + + ++ SL + + V
Sbjct: 1032 IVRLNGGGTDIHSATELPPAPFRLTHVNFNLCKKATDDGLAVFANCKDIVSLTMRFTPNV 1091
Query: 193 TDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG 252
T G+AY K + L LN P +A L L+ +L ++L + + + +++
Sbjct: 1092 TGRGLAYFKNCKDLKELNCNYSPYVSAGLPLLANCKNLEKISLMGVKFTREELRPIAEL- 1150
Query: 253 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 312
L +NLG + DE L +L LN S IGD+GL L+ L L DT +
Sbjct: 1151 PLTFVNLGATPVQDEWLSDFTNAESLTYLNFASTKIGDKGLAAFQNCNALQQLSLQDTNI 1210
Query: 313 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 368
GL + +LE + L T + D L + LK + + ++T G+ L
Sbjct: 1211 TDEGLAYFYDCRDLEILQLQNTKVRDFGLLRFKSCQKLKQVEISKTRVTAAGVDEL 1266
Score = 64.7 bits (156), Expect = 8e-08, Method: Composition-based stats.
Identities = 98/418 (23%), Positives = 148/418 (35%), Gaps = 106/418 (25%)
Query: 79 DCSNLQSLDFNFCIQISDGGLEHLR------------------GLSNLTSLSFRRN---- 116
DC ++++L IS GL+H R GLS+L+ N
Sbjct: 803 DCQDIEALTLWAVPTISADGLKHFRRCRNLKVLALPHCDNIGSGLSHLSECDKVTNLMLW 862
Query: 117 -NAITAQGMKAFAG------LINLVKLDLERCTRI-----------------HGGLVNLK 152
IT + AFA L++ + E T + GL +
Sbjct: 863 ATPITREDFLAFADCKLQGVLLSYTPVKDEWLTHLTHPEAFTDLGFSFTQIGDEGLAAFQ 922
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
K+ +L+++ ITD + LKS+++ + VTD+G+ K KL L+L
Sbjct: 923 NSKKIVNLHLEHTK-ITDVGLAYFHDCRELKSIRLRQTSVTDAGVLPFKHCSKLEELSLA 981
Query: 213 GCPVTAACLDSLSA---------------------------------LGSLFYLN----- 234
VTAA ++ L A +G + LN
Sbjct: 982 TTNVTAAAVEELRAALPNCKITWDGDAKTESPEEKNSDNLAAKYVLSIGGIVRLNGGGTD 1041
Query: 235 ------------------LNRC-QLSDDGCEKFSKIGSLKVLNLGFN-EITDECLVHLKG 274
N C + +DDG F+ + L + F +T L + K
Sbjct: 1042 IHSATELPPAPFRLTHVNFNLCKKATDDGLAVFANCKDIVSLTMRFTPNVTGRGLAYFKN 1101
Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 334
+L+ LN + GL L NL+ + L + LR ++ L L +NL T
Sbjct: 1102 CKDLKELNCNYSPYVSAGLPLLANCKNLEKISLMGVKFTREELRPIAELP-LTFVNLGAT 1160
Query: 335 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
+ D L SL LN + +I D GLAA + L L L ITD G AY
Sbjct: 1161 PVQDEWLSDFTNAESLTYLNFASTKIGDKGLAAFQNCNALQQLSLQDTNITDEGLAYF 1218
Score = 47.4 bits (111), Expect = 0.013, Method: Composition-based stats.
Identities = 51/203 (25%), Positives = 76/203 (37%), Gaps = 2/203 (0%)
Query: 193 TDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI 251
T+ A Q + L L P ++A L +L L L C G S+
Sbjct: 794 TNEEFAVFADCQDIEALTLWAVPTISADGLKHFRRCRNLKVLALPHCDNIGSGLSHLSEC 853
Query: 252 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 311
+ L L IT E + L+ + L + DE L +LT L S TQ
Sbjct: 854 DKVTNLMLWATPITREDFLAFAD-CKLQGVLLSYTPVKDEWLTHLTHPEAFTDLGFSFTQ 912
Query: 312 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 371
+G GL + +++L T I+D L LKS+ L +TD G+
Sbjct: 913 IGDEGLAAFQNSKKIVNLHLEHTKITDVGLAYFHDCRELKSIRLRQTSVTDAGVLPFKHC 972
Query: 372 TGLTHLDLFGARITDSGAAYLRS 394
+ L L L +T + LR+
Sbjct: 973 SKLEELSLATTNVTAAAVEELRA 995
Score = 42.0 bits (97), Expect = 0.46, Method: Composition-based stats.
Identities = 43/218 (19%), Positives = 82/218 (37%), Gaps = 54/218 (24%)
Query: 83 LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT 142
L ++FN C + +D GL ++ SL+ R +T +G+ F +L +L+
Sbjct: 1055 LTHVNFNLCKKATDDGLAVFANCKDIVSLTMRFTPNVTGRGLAYFKNCKDLKELNCNYSP 1114
Query: 143 RIHGGL---VNLKGLMKLESLNIKWCNCITDSDMKP--------------------LSGL 179
+ GL N K L K+ + +K+ T +++P LS
Sbjct: 1115 YVSAGLPLLANCKNLEKISLMGVKF----TREELRPIAELPLTFVNLGATPVQDEWLSDF 1170
Query: 180 TN---------------------------LKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
TN L+ L + + +TD G+AY + L +L L+
Sbjct: 1171 TNAESLTYLNFASTKIGDKGLAAFQNCNALQQLSLQDTNITDEGLAYFYDCRDLEILQLQ 1230
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 250
V L + L + +++ +++ G ++ K
Sbjct: 1231 NTKVRDFGLLRFKSCQKLKQVEISKTRVTAAGVDELKK 1268
>gi|62632752|ref|NP_001015043.1| F-box and leucine-rich repeat protein 14b [Danio rerio]
gi|190338219|gb|AAI63001.1| F-box and leucine-rich repeat protein 14b [Danio rerio]
gi|190338703|gb|AAI63002.1| F-box and leucine-rich repeat protein 14b [Danio rerio]
Length = 400
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 107/312 (34%), Positives = 165/312 (52%), Gaps = 32/312 (10%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + G ++ + L
Sbjct: 68 RGIRRVQILSLRRSLSYVIQGMP------NIESLNLSGCYNLTDNGLGHAFVQEIPSLRV 121
Query: 160 LNIKWCNCITDSDMKPLSG-LTNLKSLQI-SCSKVTDSGIAYLK-GLQKLTLLNLEGCPV 216
LN+ C ITDS + ++ L NL+ L++ CS +T++G+ + GL +L LNL C
Sbjct: 122 LNLSLCKQITDSSLGRIAQYLKNLEVLELGGCSNITNTGLLLIAWGLHRLKSLNLRSCRH 181
Query: 217 TA-------ACLDSLSALG--SLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-NEI 264
+ A + +A G SL YL L CQ L+D + SK + LKVLNL F I
Sbjct: 182 VSDVGIGHLAGMTRSAAEGCLSLEYLTLQDCQKLTDLSLKHISKGLTKLKVLNLSFCGGI 241
Query: 265 TDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLS 321
+D ++HL +T+L SLNL SC I D G+++L G L L++S ++G L +++
Sbjct: 242 SDAGMIHLSHMTSLWSLNLRSCDNISDTGIMHLAMGTLRLSGLDVSFCDKIGDQSLAYIA 301
Query: 322 -GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALT-SLTGLTHL 377
GL L+S++L ISD + R + + L++LN+ +ITD GL + LT LT +
Sbjct: 302 QGLYQLKSLSLCSCHISDDGINRMVRQMHELRTLNIGQCVRITDKGLELIADHLTQLTGI 361
Query: 378 DLFG-ARITDSG 388
DL+G +IT G
Sbjct: 362 DLYGCTKITKRG 373
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 98/308 (31%), Positives = 168/308 (54%), Gaps = 26/308 (8%)
Query: 81 SNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAG-LINLVKLD 137
N++SL+ + C ++D GL H ++ + +L L+ IT + A L NL L+
Sbjct: 90 PNIESLNLSGCYNLTDNGLGHAFVQEIPSLRVLNLSLCKQITDSSLGRIAQYLKNLEVLE 149
Query: 138 LERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT--------NLKSLQI 187
L C+ I G L+ GL +L+SLN++ C ++D + L+G+T +L+ L +
Sbjct: 150 LGGCSNITNTGLLLIAWGLHRLKSLNLRSCRHVSDVGIGHLAGMTRSAAEGCLSLEYLTL 209
Query: 188 S-CSKVTDSGIAYL-KGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDD 243
C K+TD + ++ KGL KL +LNL C ++ A + LS + SL+ LNL C +SD
Sbjct: 210 QDCQKLTDLSLKHISKGLTKLKVLNLSFCGGISDAGMIHLSHMTSLWSLNLRSCDNISDT 269
Query: 244 GCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGLVNLT-G 298
G + +G+L++ L++ F ++I D+ L ++ +GL L+SL+L SC I D+G+ +
Sbjct: 270 GIMHLA-MGTLRLSGLDVSFCDKIGDQSLAYIAQGLYQLKSLSLCSCHISDDGINRMVRQ 328
Query: 299 LCNLKCLELSD-TQVGSSGLRHLS-GLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNL 355
+ L+ L + ++ GL ++ LT L I+L T I+ L ++ L LK LNL
Sbjct: 329 MHELRTLNIGQCVRITDKGLELIADHLTQLTGIDLYGCTKITKRGLERITQLPCLKVLNL 388
Query: 356 DARQITDT 363
Q+T++
Sbjct: 389 GLWQMTES 396
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 88/286 (30%), Positives = 143/286 (50%), Gaps = 33/286 (11%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEH 101
+ D + IA +L ++L G S++T++GL+ + L+SL+ C +SD G+ H
Sbjct: 130 ITDSSLGRIAQYLKNLEVLELGGCSNITNTGLLLIAWGLHRLKSLNLRSCRHVSDVGIGH 189
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNL-KGLMKLES 159
L G++ A G ++L L L+ C ++ L ++ KGL KL+
Sbjct: 190 LAGMTR-----------------SAAEGCLSLEYLTLQDCQKLTDLSLKHISKGLTKLKV 232
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK-GLQKLTLLNLEGCPVT 217
LN+ +C I+D+ M LS +T+L SL + SC ++D+GI +L G +L+ L++ C
Sbjct: 233 LNLSFCGGISDAGMIHLSHMTSLWSLNLRSCDNISDTGIMHLAMGTLRLSGLDVSFCDKI 292
Query: 218 AACLDSLSALGSLFY----LNLNRCQLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVH 271
SL+ + Y L+L C +SDDG + + + L+ LN+G ITD+ L
Sbjct: 293 GD--QSLAYIAQGLYQLKSLSLCSCHISDDGINRMVRQMHELRTLNIGQCVRITDKGLEL 350
Query: 272 LK-GLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSS 315
+ LT L ++L C I GL +T L LK L L Q+ S
Sbjct: 351 IADHLTQLTGIDLYGCTKITKRGLERITQLPCLKVLNLGLWQMTES 396
>gi|290970785|ref|XP_002668255.1| predicted protein [Naegleria gruberi]
gi|284081550|gb|EFC35511.1| predicted protein [Naegleria gruberi]
Length = 295
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 78/289 (26%), Positives = 142/289 (49%), Gaps = 3/289 (1%)
Query: 83 LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT 142
L SL+ N+ I D G++ + + LTSL NN I +G K + + L LD+
Sbjct: 4 LTSLNINYN-NIGDEGVKLISEMKQLTSLDINYNN-IGVEGAKYISEMKQLTSLDISDNN 61
Query: 143 RIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKG 202
G+ + + +L SLNI+ N I K +S + L SL I+C+ + G Y+
Sbjct: 62 IGVEGVKLISEMKQLTSLNIR-INEIGVEGAKYISEMKQLTSLDINCNNIGVEGAKYISE 120
Query: 203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 262
+++LT L++ + +S + L LN+ R ++ D+G + S++ L LN+ N
Sbjct: 121 MKQLTSLDISWNNIGVEGAKLISEMKQLTSLNIRRNEIGDEGAKYISEMKQLTSLNISDN 180
Query: 263 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 322
I E + + L SLN++ IGDEG ++ + L L +S ++G G +++S
Sbjct: 181 NIGVEGAKLISEMKQLTSLNINWNEIGDEGAKYISEMKQLTSLNISWNKIGDEGAKYISE 240
Query: 323 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 371
+ L S+++++ I + ++ + L SLN++ I G L+ +
Sbjct: 241 MKQLTSLDINWNKIGVEGAKLISEMKQLTSLNINDNNIGVEGAKYLSEM 289
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 77/287 (26%), Positives = 145/287 (50%), Gaps = 12/287 (4%)
Query: 41 YPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDF---NFCIQISDG 97
Y + D+ + +I S+ L S+D++ +++ G ++ + L SLD N ++
Sbjct: 11 YNNIGDEGVKLI-SEMKQLTSLDINYNNIGVEGAKYISEMKQLTSLDISDNNIGVE---- 65
Query: 98 GLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH-GGLVNLKGLMK 156
G++ + + LTSL+ R N I +G K + + L LD+ C I G + + +
Sbjct: 66 GVKLISEMKQLTSLNIRI-NEIGVEGAKYISEMKQLTSLDI-NCNNIGVEGAKYISEMKQ 123
Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
L SL+I W N + K +S + L SL I +++ D G Y+ +++LT LN+ +
Sbjct: 124 LTSLDISWNNIGVEG-AKLISEMKQLTSLNIRRNEIGDEGAKYISEMKQLTSLNISDNNI 182
Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 276
+S + L LN+N ++ D+G + S++ L LN+ +N+I DE ++ +
Sbjct: 183 GVEGAKLISEMKQLTSLNINWNEIGDEGAKYISEMKQLTSLNISWNKIGDEGAKYISEMK 242
Query: 277 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 323
L SL+++ IG EG ++ + L L ++D +G G ++LS +
Sbjct: 243 QLTSLDINWNKIGVEGAKLISEMKQLTSLNINDNNIGVEGAKYLSEM 289
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/239 (25%), Positives = 121/239 (50%), Gaps = 1/239 (0%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
+ +L SLNI + N I D +K +S + L SL I+ + + G Y+ +++LT L++
Sbjct: 1 MKQLTSLNINYNN-IGDEGVKLISEMKQLTSLDINYNNIGVEGAKYISEMKQLTSLDISD 59
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
+ + +S + L LN+ ++ +G + S++ L L++ N I E ++
Sbjct: 60 NNIGVEGVKLISEMKQLTSLNIRINEIGVEGAKYISEMKQLTSLDINCNNIGVEGAKYIS 119
Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333
+ L SL++ IG EG ++ + L L + ++G G +++S + L S+N+S
Sbjct: 120 EMKQLTSLDISWNNIGVEGAKLISEMKQLTSLNIRRNEIGDEGAKYISEMKQLTSLNISD 179
Query: 334 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
I + ++ + L SLN++ +I D G ++ + LT L++ +I D GA Y+
Sbjct: 180 NNIGVEGAKLISEMKQLTSLNINWNEIGDEGAKYISEMKQLTSLNISWNKIGDEGAKYI 238
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 117/236 (49%), Gaps = 1/236 (0%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
+ +L SL+I + N + K +S + L SL IS + + G+ + +++LT LN+
Sbjct: 25 MKQLTSLDINYNNIGVEG-AKYISEMKQLTSLDISDNNIGVEGVKLISEMKQLTSLNIRI 83
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
+ +S + L L++N + +G + S++ L L++ +N I E +
Sbjct: 84 NEIGVEGAKYISEMKQLTSLDINCNNIGVEGAKYISEMKQLTSLDISWNNIGVEGAKLIS 143
Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333
+ L SLN+ IGDEG ++ + L L +SD +G G + +S + L S+N+++
Sbjct: 144 EMKQLTSLNIRRNEIGDEGAKYISEMKQLTSLNISDNNIGVEGAKLISEMKQLTSLNINW 203
Query: 334 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 389
I D + ++ + L SLN+ +I D G ++ + LT LD+ +I GA
Sbjct: 204 NEIGDEGAKYISEMKQLTSLNISWNKIGDEGAKYISEMKQLTSLDINWNKIGVEGA 259
>gi|215769345|dbj|BAH01574.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 483
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 106/364 (29%), Positives = 166/364 (45%), Gaps = 65/364 (17%)
Query: 83 LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT 142
L+ LD + C +ISD G++H+ + +L L + +T G+ A + LINL LDL
Sbjct: 4 LKELDLSRCSKISDAGIKHIASIESLEKLHVSQT-GLTDNGVMAISSLINLRLLDLGGVR 62
Query: 143 RIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKG 202
L +L+ L +LE L+I W + IT+ L T+L L IS ++VT L
Sbjct: 63 FTDKALRSLQVLTQLEHLDI-WGSEITNEGASVLIAFTSLSFLNISWTRVT-----CLPI 116
Query: 203 LQKLTLLNLEGCPVTAAC-------------LDSLSALG------------SLFYLNLNR 237
L L LN+ C + + C + S ++ G SL YL+++
Sbjct: 117 LPTLRCLNMSNCTIHSICNGEFQVLIHLEKLIISAASFGNIDEVFSSILPSSLTYLDMSS 176
Query: 238 CQLSD----------------------DGCEKFSKIG-SLKVLNLGFNEITDECLVHLKG 274
C S+ D E + IG +LK L+L +E+T + L L G
Sbjct: 177 CSSSNLYFLGNMRNLEHLDLSYSRIISDAIEYIANIGMNLKFLSLSNSEVTSQALCVLAG 236
Query: 275 -LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT---------QVGSSGLRHLSGLT 324
+ +L +L+L I D L+ ++ + +L+ L LS T V L L L
Sbjct: 237 TVPSLTTLSLAHTKIDDSALLYISMMPSLRILNLSRTCIKGFMMENSVKVLSLSALEELK 296
Query: 325 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 384
LES+NL+ T + D + LA L +LK L L + ++D L AL+S + L HL G +
Sbjct: 297 YLESLNLNNTQLMDDVIPPLASLRALKYLFLKSDFLSDPALHALSSASNLIHLGFCGNIL 356
Query: 385 TDSG 388
+ +G
Sbjct: 357 STTG 360
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 69/259 (26%), Positives = 126/259 (48%), Gaps = 26/259 (10%)
Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
L+ L++ C+ I+D+ +K ++ + +L+ L +S + +TD+G+ + L L LL+L G
Sbjct: 4 LKELDLSRCSKISDAGIKHIASIESLEKLHVSQTGLTDNGVMAISSLINLRLLDLGGVRF 63
Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT----------- 265
T L SL L L +L++ +++++G SL LN+ + +T
Sbjct: 64 TDKALRSLQVLTQLEHLDIWGSEITNEGASVLIAFTSLSFLNISWTRVTCLPILPTLRCL 123
Query: 266 --DECLVH------LKGLTNLESLNLDSCGIG--DEGLVNLTGLCNLKCLELSDTQVGSS 315
C +H + L +LE L + + G DE ++ +L L++S SS
Sbjct: 124 NMSNCTIHSICNGEFQVLIHLEKLIISAASFGNIDEVFSSILP-SSLTYLDMSS--CSSS 180
Query: 316 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLS-SLKSLNLDARQITDTGLAALT-SLTG 373
L L + NLE ++LS++ I ++ +A + +LK L+L ++T L L ++
Sbjct: 181 NLYFLGNMRNLEHLDLSYSRIISDAIEYIANIGMNLKFLSLSNSEVTSQALCVLAGTVPS 240
Query: 374 LTHLDLFGARITDSGAAYL 392
LT L L +I DS Y+
Sbjct: 241 LTTLSLAHTKIDDSALLYI 259
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 103/381 (27%), Positives = 171/381 (44%), Gaps = 67/381 (17%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
L++L L + ++D + IAS SL + +S + +TD+G++ + NL+ LD +
Sbjct: 4 LKELDLSRCSKISDAGIKHIASI-ESLEKLHVSQTGLTDNGVMAISSLINLRLLDLG-GV 61
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQG---MKAFAGL----INLVK---------- 135
+ +D L L+ L+ L L + IT +G + AF L I+ +
Sbjct: 62 RFTDKALRSLQVLTQLEHLDIW-GSEITNEGASVLIAFTSLSFLNISWTRVTCLPILPTL 120
Query: 136 --LDLERCTRIHG-------GLVNLKGLM-------------------KLESLNIKWCNC 167
L++ CT IH L++L+ L+ L L++ C
Sbjct: 121 RCLNMSNCT-IHSICNGEFQVLIHLEKLIISAASFGNIDEVFSSILPSSLTYLDMSSC-- 177
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGL-QKLTLLNLEGCPVTAACLDSLS- 225
+ S++ L + NL+ L +S S++ I Y+ + L L+L VT+ L L+
Sbjct: 178 -SSSNLYFLGNMRNLEHLDLSYSRIISDAIEYIANIGMNLKFLSLSNSEVTSQALCVLAG 236
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL------GF---NEITDECLVHLKGLT 276
+ SL L+L ++ D S + SL++LNL GF N + L L+ L
Sbjct: 237 TVPSLTTLSLAHTKIDDSALLYISMMPSLRILNLSRTCIKGFMMENSVKVLSLSALEELK 296
Query: 277 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG- 335
LESLNL++ + D+ + L L LK L L + L LS +NL I+L F G
Sbjct: 297 YLESLNLNNTQLMDDVIPPLASLRALKYLFLKSDFLSDPALHALSSASNL--IHLGFCGN 354
Query: 336 -ISDGSLRKLAGLSSLKSLNL 355
+S LRK ++L+ L+L
Sbjct: 355 ILSTTGLRKFVPPATLRMLDL 375
>gi|290984863|ref|XP_002675146.1| LRR_RI domain-containing protein [Naegleria gruberi]
gi|284088740|gb|EFC42402.1| LRR_RI domain-containing protein [Naegleria gruberi]
Length = 458
Score = 94.4 bits (233), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 74/302 (24%), Positives = 149/302 (49%), Gaps = 2/302 (0%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
+I + G + + L LT+L+ +N I +G+K F+ L +L ++ + G +
Sbjct: 135 KIRNEGAKCIPQLKQLTNLNVE-DNKIGNEGVKCFSELKHLTNFNIRNNKIMDEGAKYIS 193
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
+ +L +NI N I + + +S + L +L I +++ D G ++ ++ LT L++
Sbjct: 194 QMSQLTCMNI-GNNNIGEPGAEYISQMKQLTNLNIHGNRIGDKGARHISEMEGLTHLDIG 252
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
+ LS + L YL + +L ++G + S++ L +L +G N I ++
Sbjct: 253 YNNLGNLGSQYLSQMKKLTYLFIEGNRLDENGAKFVSELKQLTILCIGANGIGPNGARYI 312
Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 332
+ L L++ IG+EG +L + L L + ++GS G + +S + L S+++
Sbjct: 313 TEMKQLTDLSIGGAKIGEEGARHLKTMNQLTNLNIGYNRLGSIGAKFISEMKQLTSLDIF 372
Query: 333 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
+ I D + ++ L +L+ L++ ITD G ++ L LTHL + ++D GA Y+
Sbjct: 373 YNNIEDEGAKHISELKNLRKLDIGRNNITDEGAKYVSQLNQLTHLSITYNNLSDEGAKYI 432
Query: 393 RS 394
+
Sbjct: 433 NT 434
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 79/311 (25%), Positives = 147/311 (47%), Gaps = 6/311 (1%)
Query: 76 HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135
LK +NL D +I + G++ L +LT+ + R NN I +G K + + L
Sbjct: 146 QLKQLTNLNVEDN----KIGNEGVKCFSELKHLTNFNIR-NNKIMDEGAKYISQMSQLTC 200
Query: 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS 195
+++ G + + +L +LNI N I D + +S + L L I + + +
Sbjct: 201 MNIGNNNIGEPGAEYISQMKQLTNLNIHG-NRIGDKGARHISEMEGLTHLDIGYNNLGNL 259
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G YL ++KLT L +EG + +S L L L + + +G +++ L
Sbjct: 260 GSQYLSQMKKLTYLFIEGNRLDENGAKFVSELKQLTILCIGANGIGPNGARYITEMKQLT 319
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 315
L++G +I +E HLK + L +LN+ +G G ++ + L L++ +
Sbjct: 320 DLSIGGAKIGEEGARHLKTMNQLTNLNIGYNRLGSIGAKFISEMKQLTSLDIFYNNIEDE 379
Query: 316 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 375
G +H+S L NL +++ I+D + ++ L+ L L++ ++D G + ++T LT
Sbjct: 380 GAKHISELKNLRKLDIGRNNITDEGAKYVSQLNQLTHLSITYNNLSDEGAKYINTMTQLT 439
Query: 376 HLDLFGARITD 386
LD+ G I+D
Sbjct: 440 KLDIGGNAISD 450
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 61/242 (25%), Positives = 120/242 (49%), Gaps = 5/242 (2%)
Query: 154 LMKLESLNI-KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
L ++SLN+ ++ N D L + +L +L I SK+ + G + L++LT LN+E
Sbjct: 101 LQNIQSLNVNQYFNTF---DCHVLEFMGSLNNLTIR-SKIRNEGAKCIPQLKQLTNLNVE 156
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
+ + S L L N+ ++ D+G + S++ L +N+G N I + ++
Sbjct: 157 DNKIGNEGVKCFSELKHLTNFNIRNNKIMDEGAKYISQMSQLTCMNIGNNNIGEPGAEYI 216
Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 332
+ L +LN+ IGD+G +++ + L L++ +G+ G ++LS + L + +
Sbjct: 217 SQMKQLTNLNIHGNRIGDKGARHISEMEGLTHLDIGYNNLGNLGSQYLSQMKKLTYLFIE 276
Query: 333 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
+ + + ++ L L L + A I G +T + LT L + GA+I + GA +L
Sbjct: 277 GNRLDENGAKFVSELKQLTILCIGANGIGPNGARYITEMKQLTDLSIGGAKIGEEGARHL 336
Query: 393 RS 394
++
Sbjct: 337 KT 338
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 55/242 (22%), Positives = 112/242 (46%), Gaps = 11/242 (4%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
SQ L ++++ G+ + D G H+ + L LD + + + G ++L + LT L F
Sbjct: 217 SQMKQLTNLNIHGNRIGDKGARHISEMEGLTHLDIGYN-NLGNLGSQYLSQMKKLTYL-F 274
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHG----GLVNLKGLMKLESLNIKWCNCIT 169
N + G K + L L L C +G G + + +L L+I I
Sbjct: 275 IEGNRLDENGAKFVSELKQLTIL----CIGANGIGPNGARYITEMKQLTDLSIGGAK-IG 329
Query: 170 DSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 229
+ + L + L +L I +++ G ++ +++LT L++ + +S L +
Sbjct: 330 EEGARHLKTMNQLTNLNIGYNRLGSIGAKFISEMKQLTSLDIFYNNIEDEGAKHISELKN 389
Query: 230 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 289
L L++ R ++D+G + S++ L L++ +N ++DE ++ +T L L++ I
Sbjct: 390 LRKLDIGRNNITDEGAKYVSQLNQLTHLSITYNNLSDEGAKYINTMTQLTKLDIGGNAIS 449
Query: 290 DE 291
D+
Sbjct: 450 DD 451
>gi|209154948|gb|ACI33706.1| F-box/LRR-repeat protein 14 [Salmo salar]
Length = 400
Score = 94.4 bits (233), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 105/312 (33%), Positives = 165/312 (52%), Gaps = 32/312 (10%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + G ++ + L
Sbjct: 68 RGIRRVQILSLRRSLSYVIQGMP------NIESLNLSGCYNLTDNGLGHAFVQEIPSLRV 121
Query: 160 LNIKWCNCITDSDMKPLSG-LTNLKSLQI-SCSKVTDSGIAYLK-GLQKLTLLNLEGCPV 216
LN+ C ITDS + ++ L NL+ L++ CS +T++G+ + GL +L LNL C
Sbjct: 122 LNLSLCKQITDSSLGRIAQYLKNLEVLELGGCSNITNTGLLLIAWGLHRLKSLNLRSCRH 181
Query: 217 TA-------ACLDSLSALG--SLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-NEI 264
+ A + +A G +L YL L CQ L+D + SK + L+VLNL F I
Sbjct: 182 VSDVGIGHLAGMTRSAAEGCLNLEYLTLQDCQKLTDLSLKHISKGLAKLRVLNLSFCGGI 241
Query: 265 TDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLS 321
+D ++HL +T+L SLNL SC I D G+++L G L L++S ++G L +++
Sbjct: 242 SDAGMIHLSHMTSLWSLNLRSCDNISDTGIMHLAMGTLRLSGLDMSFCDKIGDQSLAYIA 301
Query: 322 -GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALT-SLTGLTHL 377
GL L+S++L ISD + R + + L++LN+ +ITD GL + LT LT +
Sbjct: 302 QGLYQLKSLSLCSCHISDDGINRMVRQMHELRTLNIGQCVRITDKGLELIADHLTQLTGI 361
Query: 378 DLFG-ARITDSG 388
DL+G +IT G
Sbjct: 362 DLYGCTKITKRG 373
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 99/308 (32%), Positives = 168/308 (54%), Gaps = 26/308 (8%)
Query: 81 SNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAG-LINLVKLD 137
N++SL+ + C ++D GL H ++ + +L L+ IT + A L NL L+
Sbjct: 90 PNIESLNLSGCYNLTDNGLGHAFVQEIPSLRVLNLSLCKQITDSSLGRIAQYLKNLEVLE 149
Query: 138 LERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT--------NLKSLQI 187
L C+ I G L+ GL +L+SLN++ C ++D + L+G+T NL+ L +
Sbjct: 150 LGGCSNITNTGLLLIAWGLHRLKSLNLRSCRHVSDVGIGHLAGMTRSAAEGCLNLEYLTL 209
Query: 188 S-CSKVTDSGIAYL-KGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDD 243
C K+TD + ++ KGL KL +LNL C ++ A + LS + SL+ LNL C +SD
Sbjct: 210 QDCQKLTDLSLKHISKGLAKLRVLNLSFCGGISDAGMIHLSHMTSLWSLNLRSCDNISDT 269
Query: 244 GCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGLVNLT-G 298
G + +G+L++ L++ F ++I D+ L ++ +GL L+SL+L SC I D+G+ +
Sbjct: 270 GIMHLA-MGTLRLSGLDMSFCDKIGDQSLAYIAQGLYQLKSLSLCSCHISDDGINRMVRQ 328
Query: 299 LCNLKCLELSD-TQVGSSGLRHLS-GLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNL 355
+ L+ L + ++ GL ++ LT L I+L T I+ L ++ L LK LNL
Sbjct: 329 MHELRTLNIGQCVRITDKGLELIADHLTQLTGIDLYGCTKITKRGLERITQLPCLKVLNL 388
Query: 356 DARQITDT 363
Q+T++
Sbjct: 389 GLWQMTES 396
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 89/286 (31%), Positives = 142/286 (49%), Gaps = 33/286 (11%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEH 101
+ D + IA +L ++L G S++T++GL+ + L+SL+ C +SD G+ H
Sbjct: 130 ITDSSLGRIAQYLKNLEVLELGGCSNITNTGLLLIAWGLHRLKSLNLRSCRHVSDVGIGH 189
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNL-KGLMKLES 159
L G++ A G +NL L L+ C ++ L ++ KGL KL
Sbjct: 190 LAGMTR-----------------SAAEGCLNLEYLTLQDCQKLTDLSLKHISKGLAKLRV 232
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK-GLQKLTLLNLEGCPVT 217
LN+ +C I+D+ M LS +T+L SL + SC ++D+GI +L G +L+ L++ C
Sbjct: 233 LNLSFCGGISDAGMIHLSHMTSLWSLNLRSCDNISDTGIMHLAMGTLRLSGLDMSFCDKI 292
Query: 218 AACLDSLSALGSLFY----LNLNRCQLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVH 271
SL+ + Y L+L C +SDDG + + + L+ LN+G ITD+ L
Sbjct: 293 GD--QSLAYIAQGLYQLKSLSLCSCHISDDGINRMVRQMHELRTLNIGQCVRITDKGLEL 350
Query: 272 LK-GLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSS 315
+ LT L ++L C I GL +T L LK L L Q+ S
Sbjct: 351 IADHLTQLTGIDLYGCTKITKRGLERITQLPCLKVLNLGLWQMTES 396
>gi|255537779|ref|XP_002509956.1| protein binding protein, putative [Ricinus communis]
gi|223549855|gb|EEF51343.1| protein binding protein, putative [Ricinus communis]
Length = 597
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 90/307 (29%), Positives = 144/307 (46%), Gaps = 32/307 (10%)
Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDS 171
R NA+ A+ M L L+L C +I L +L G+ L+ L++ +TD+
Sbjct: 70 LRGENAVDAEWMAYLGAFRYLRYLNLADCNKITSSALWSLTGMTSLKELDLSRSVKVTDA 129
Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
++ L +++L+ L+I + +T G+A L L L++L+L G PVT L SL L L
Sbjct: 130 GIRHLLSISSLEILRIPETGLTAKGVALLTSLTNLSVLDLGGLPVTDMALSSLQVLTKLE 189
Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI--- 288
YL+L +S++G L LNLG+ +T L + +LE LNL +C I
Sbjct: 190 YLDLWGSNISNNGVAVLQLFPKLSFLNLGWTSVT-----RLPSMLSLEYLNLSNCTIESL 244
Query: 289 ----GDEGLVNLT--------------GLCNLKCLELSDTQVGSS---GLRHLSGLTNLE 327
GD LT N++ LS V +S G L + LE
Sbjct: 245 LEGDGDGDKAPLTKVILSGATFPNEAEAFYNIEPRFLSFLDVSNSSLQGFYFLHDMKMLE 304
Query: 328 SINLSFTGISDGSLRKLAGL-SSLKSLNLDARQITDTGLAALTS-LTGLTHLDLFGARIT 385
++LS T + D ++ +A + ++L +LNL ++T GLA L + L +L L A +
Sbjct: 305 HLDLSSTMMGDDAIEAVACIGANLTNLNLSKTRVTSAGLAILAEHVPKLEYLSLSHALVD 364
Query: 386 DSGAAYL 392
D +Y+
Sbjct: 365 DFALSYI 371
Score = 90.9 bits (224), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 105/380 (27%), Positives = 162/380 (42%), Gaps = 93/380 (24%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+T S L L ++L+ LD + ++++D G+ HL +S+L L +TA+G+
Sbjct: 101 ITSSALWSLTGMTSLKELDLSRSVKVTDAGIRHLLSISSLEILRIP-ETGLTAKGVALLT 159
Query: 129 GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
L NL LDL GGL +TD + L LT L+ L +
Sbjct: 160 SLTNLSVLDL-------GGL------------------PVTDMALSSLQVLTKLEYLDLW 194
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ----LSDDG 244
S ++++G+A L+ KL+ LNL VT L ++ SL YLNL+ C L DG
Sbjct: 195 GSNISNNGVAVLQLFPKLSFLNLGWTSVT-----RLPSMLSLEYLNLSNCTIESLLEGDG 249
Query: 245 --------------------CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284
E F I + L + + + L + LE L+L
Sbjct: 250 DGDKAPLTKVILSGATFPNEAEAFYNIEPRFLSFLDVSNSSLQGFYFLHDMKMLEHLDLS 309
Query: 285 SCGIGDEGLVNLTGL-CNLKCLELSDTQVGSSGL----RHLSGL---------------- 323
S +GD+ + + + NL L LS T+V S+GL H+ L
Sbjct: 310 STMMGDDAIEAVACIGANLTNLNLSKTRVTSAGLAILAEHVPKLEYLSLSHALVDDFALS 369
Query: 324 -----TNLESINLSFTGISD------------GSLRKLAGLSSLKSLNLDARQITDTGLA 366
++L+ ++LS T I SL+ L GLS L+SLNL+ Q+ D +A
Sbjct: 370 YIGMMSSLKVVDLSNTNIKGFIRQMGVETNLIPSLKALQGLSGLQSLNLEHTQVRDAAVA 429
Query: 367 ALTSLTGLTHLDLFGARITD 386
++S L+HL L A + D
Sbjct: 430 PVSSFQELSHLSLKSASLAD 449
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 87/144 (60%), Gaps = 3/144 (2%)
Query: 253 SLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDT 310
S++V++L G N + E + +L L LNL C I L +LTG+ +LK L+LS +
Sbjct: 64 SVEVVDLRGENAVDAEWMAYLGAFRYLRYLNLADCNKITSSALWSLTGMTSLKELDLSRS 123
Query: 311 -QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 369
+V +G+RHL +++LE + + TG++ + L L++L L+L +TD L++L
Sbjct: 124 VKVTDAGIRHLLSISSLEILRIPETGLTAKGVALLTSLTNLSVLDLGGLPVTDMALSSLQ 183
Query: 370 SLTGLTHLDLFGARITDSGAAYLR 393
LT L +LDL+G+ I+++G A L+
Sbjct: 184 VLTKLEYLDLWGSNISNNGVAVLQ 207
>gi|290983152|ref|XP_002674293.1| predicted protein [Naegleria gruberi]
gi|284087882|gb|EFC41549.1| predicted protein [Naegleria gruberi]
Length = 338
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 118/223 (52%), Gaps = 2/223 (0%)
Query: 160 LNIKWCNCITDSDMKP--LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
+N+K+ + DS KP ++ + L SL IS +++ D G+ ++ +++L L + +
Sbjct: 112 VNVKFSKRLFDSIEKPTFITEMKQLTSLDISNNRIGDEGVKFISEMKQLISLGIYNNGIG 171
Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 277
+ S+ + L L + Q+ D+G + S++ L L++ N+ DE + + +
Sbjct: 172 DEGVKSIIEMKRLTSLGIGGNQIGDEGAKSISEMKQLTSLDINNNQTGDEGVKFICEMKQ 231
Query: 278 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 337
L SL + + IGDEG +++ + L L +S+ ++G G +S L L S+++ + I
Sbjct: 232 LTSLTIYNNRIGDEGAKSISEMKQLTSLNISENRIGDEGAIFISELKQLTSLDICYNRIG 291
Query: 338 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 380
D + + + LKSL++ QI D G+ ++ +T LT LD+F
Sbjct: 292 DKEAKFICEMKQLKSLDIGGNQIGDEGVKFISEMTRLTSLDIF 334
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 86/169 (50%)
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
++ + L L+++ ++ D+G + S++ L L + N I DE + + + L SL +
Sbjct: 130 ITEMKQLTSLDISNNRIGDEGVKFISEMKQLISLGIYNNGIGDEGVKSIIEMKRLTSLGI 189
Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
IGDEG +++ + L L++++ Q G G++ + + L S+ + I D +
Sbjct: 190 GGNQIGDEGAKSISEMKQLTSLDINNNQTGDEGVKFICEMKQLTSLTIYNNRIGDEGAKS 249
Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
++ + L SLN+ +I D G ++ L LT LD+ RI D A ++
Sbjct: 250 ISEMKQLTSLNISENRIGDEGAIFISELKQLTSLDICYNRIGDKEAKFI 298
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 91/179 (50%), Gaps = 5/179 (2%)
Query: 34 QDLCLGQYP-GVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
Q + LG Y G+ D+ + I + L S+ + G+ + D G + + L SLD N
Sbjct: 159 QLISLGIYNNGIGDEGVKSII-EMKRLTSLGIGGNQIGDEGAKSISEMKQLTSLDINNN- 216
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
Q D G++ + + LTSL+ NN I +G K+ + + L L++ G + +
Sbjct: 217 QTGDEGVKFICEMKQLTSLTI-YNNRIGDEGAKSISEMKQLTSLNISENRIGDEGAIFIS 275
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
L +L SL+I + N I D + K + + LKSL I +++ D G+ ++ + +LT L++
Sbjct: 276 ELKQLTSLDICY-NRIGDKEAKFICEMKQLKSLDIGGNQIGDEGVKFISEMTRLTSLDI 333
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/230 (26%), Positives = 107/230 (46%), Gaps = 27/230 (11%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
++ L S+D+S + + D G+ + + L SL + I D G++ + + LTSL
Sbjct: 131 TEMKQLTSLDISNNRIGDEGVKFISEMKQLISLGI-YNNGIGDEGVKSIIEMKRLTSLGI 189
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
N I +G K+ + + L LD+ G+ + + +L SL I + N I D
Sbjct: 190 -GGNQIGDEGAKSISEMKQLTSLDINNNQTGDEGVKFICEMKQLTSLTI-YNNRIGDEGA 247
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
K +S + L SL IS +++ D G ++ L++LT L++ C + + + F
Sbjct: 248 KSISEMKQLTSLNISENRIGDEGAIFISELKQLTSLDI--------CYNRIGDKEAKFI- 298
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
CE + LK L++G N+I DE + + +T L SL++
Sbjct: 299 -----------CE----MKQLKSLDIGGNQIGDEGVKFISEMTRLTSLDI 333
>gi|18568223|gb|AAL75966.1|AF467462_1 PpaB [Danio rerio]
Length = 392
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 107/312 (34%), Positives = 165/312 (52%), Gaps = 32/312 (10%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + +LS RR+ + QGM N+ L+L C + G ++ + L
Sbjct: 66 RGIRRVQTLSLRRSLSYVIQGMP------NIESLNLSGCYNLTDNGLGHAFVQEIPSLRV 119
Query: 160 LNIKWCNCITDSDMKPLSG-LTNLKSLQI-SCSKVTDSGIAYLK-GLQKLTLLNLEGCPV 216
LN+ C ITDS + ++ L NL+ L++ CS +T++G+ + GL +L LNL C
Sbjct: 120 LNLSLCKQITDSSLGRIAQYLKNLEVLELGGCSNITNTGLLLIAWGLHRLKSLNLRSCRH 179
Query: 217 TA-------ACLDSLSALG--SLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-NEI 264
+ A + +A G SL YL L CQ L+D + SK + LKVLNL F I
Sbjct: 180 VSDVGIGHLAGMTRSAAEGCLSLEYLTLQDCQKLTDLSLKHISKGLTKLKVLNLSFCGGI 239
Query: 265 TDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRHLS 321
+D ++HL +T+L SLNL SC I D G+++L G L L++S ++G L ++
Sbjct: 240 SDAGMIHLSHMTSLWSLNLRSCDNISDTGIMHLAMGTLRLSGLDVSFCDKIGDQSLACIA 299
Query: 322 -GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALT-SLTGLTHL 377
GL L+S++L ISD + R + + L++LN+ +ITD GL + LT LT +
Sbjct: 300 QGLYQLKSLSLCSCHISDDGINRMVRQMHELRTLNIGQCVRITDKGLELIADHLTQLTGI 359
Query: 378 DLFG-ARITDSG 388
DL+G +IT G
Sbjct: 360 DLYGCTKITKRG 371
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 87/283 (30%), Positives = 141/283 (49%), Gaps = 33/283 (11%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEH 101
+ D + IA +L ++L G S++T++GL+ + L+SL+ C +SD G+ H
Sbjct: 128 ITDSSLGRIAQYLKNLEVLELGGCSNITNTGLLLIAWGLHRLKSLNLRSCRHVSDVGIGH 187
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNL-KGLMKLES 159
L G++ A G ++L L L+ C ++ L ++ KGL KL+
Sbjct: 188 LAGMTR-----------------SAAEGCLSLEYLTLQDCQKLTDLSLKHISKGLTKLKV 230
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK-GLQKLTLLNLEGCPVT 217
LN+ +C I+D+ M LS +T+L SL + SC ++D+GI +L G +L+ L++ C
Sbjct: 231 LNLSFCGGISDAGMIHLSHMTSLWSLNLRSCDNISDTGIMHLAMGTLRLSGLDVSFCDKI 290
Query: 218 A----ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVH 271
AC+ L L L+L C +SDDG + + + L+ LN+G ITD+ L
Sbjct: 291 GDQSLACIA--QGLYQLKSLSLCSCHISDDGINRMVRQMHELRTLNIGQCVRITDKGLEL 348
Query: 272 LK-GLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQV 312
+ LT L ++L C I GL +T L LK L Q+
Sbjct: 349 IADHLTQLTGIDLYGCTKITKRGLERITQLPCLKVFNLGLWQM 391
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 102/203 (50%), Gaps = 29/203 (14%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ K + L+ L+ +FC ISD G+ HL +++L SL+ R + I+ G+
Sbjct: 213 LTDLSLKHISKGLTKLKVLNLSFCGGISDAGMIHLSHMTSLWSLNLRSCDNISDTGIMHL 272
Query: 128 A-GLINLVKLDLERCTRIHGGLVN--LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C +I + +GL +L+SL++ C+ D + + + L++
Sbjct: 273 AMGTLRLSGLDVSFCDKIGDQSLACIAQGLYQLKSLSLCSCHISDDGINRMVRQMHELRT 332
Query: 185 LQI-SCSKVTDSGIAYLK-GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
L I C ++TD G+ + L +LT ++L GC +++
Sbjct: 333 LNIGQCVRITDKGLELIADHLTQLTGIDLYGCT-----------------------KITK 369
Query: 243 DGCEKFSKIGSLKVLNLGFNEIT 265
G E+ +++ LKV NLG ++T
Sbjct: 370 RGLERITQLPCLKVFNLGLWQMT 392
>gi|344170515|emb|CCA82933.1| leucine-rich-repeat type III effector protein (GALA5) [blood
disease bacterium R229]
Length = 533
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 94/312 (30%), Positives = 140/312 (44%), Gaps = 3/312 (0%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
L + L SLD + +I G L G + LT+LS N I A+G KA A L L
Sbjct: 184 LANHPTLTSLDVSNG-RIGPEGARALAGNTRLTTLSVSHNR-IGAEGAKALAASETLTSL 241
Query: 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG 196
D+ G L KL +LN+ N I K L+ L SL I + + D G
Sbjct: 242 DISENGIGDEGACALATNTKLTALNVN-RNRIGVEGAKALAAGEALTSLDIGGNDIGDEG 300
Query: 197 IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 256
+ L +LT LN+E V A + +L+A +L L ++ + D G + SL
Sbjct: 301 VRALAANARLTTLNVERTRVGADGVGALAASKTLTSLRIDSNNIGDAGARALATNTSLTT 360
Query: 257 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 316
L++ N I+ L T L +LNL GIGD G + L L + + +G
Sbjct: 361 LHIESNGISPAGAQALAANTTLTTLNLGYNGIGDAGAQAWSANTTLISLSVRRNGLSDAG 420
Query: 317 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 376
L+ L +++ I D R LA +L +L++ + +I + G AL + TGL
Sbjct: 421 ATTLAASKTLTTLDAGDNTIRDAGARALAANRTLTTLDVRSNEIENAGARALAANTGLAS 480
Query: 377 LDLFGARITDSG 388
LDL R+T++G
Sbjct: 481 LDLRNNRVTEAG 492
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 76/261 (29%), Positives = 119/261 (45%), Gaps = 8/261 (3%)
Query: 133 LVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNC----ITDSDMKPLSGLTNLKSLQIS 188
L +LDL RC G + G+ L L + N I + L+ L SL +S
Sbjct: 141 LTELDLSRCR----GPITAAGIAHLSHLPLVRLNVRDQRIGVEGARLLANHPTLTSLDVS 196
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 248
++ G L G +LT L++ + A +L+A +L L+++ + D+G
Sbjct: 197 NGRIGPEGARALAGNTRLTTLSVSHNRIGAEGAKALAASETLTSLDISENGIGDEGACAL 256
Query: 249 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 308
+ L LN+ N I E L L SL++ IGDEG+ L L L +
Sbjct: 257 ATNTKLTALNVNRNRIGVEGAKALAAGEALTSLDIGGNDIGDEGVRALAANARLTTLNVE 316
Query: 309 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 368
T+VG+ G+ L+ L S+ + I D R LA +SL +L++++ I+ G AL
Sbjct: 317 RTRVGADGVGALAASKTLTSLRIDSNNIGDAGARALATNTSLTTLHIESNGISPAGAQAL 376
Query: 369 TSLTGLTHLDLFGARITDSGA 389
+ T LT L+L I D+GA
Sbjct: 377 AANTTLTTLNLGYNGIGDAGA 397
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 83/277 (29%), Positives = 129/277 (46%), Gaps = 5/277 (1%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
+L S+D+S + + D G L + L +L+ N +I G + L LTSL N+
Sbjct: 237 TLTSLDISENGIGDEGACALATNTKLTALNVNRN-RIGVEGAKALAAGEALTSLDIGGND 295
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
I +G++A A L L++ER TR+ G+ L L SL I N I D+ + L
Sbjct: 296 -IGDEGVRALAANARLTTLNVER-TRVGADGVGALAASKTLTSLRID-SNNIGDAGARAL 352
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ T+L +L I + ++ +G L LT LNL + A + SA +L L++
Sbjct: 353 ATNTSLTTLHIESNGISPAGAQALAANTTLTTLNLGYNGIGDAGAQAWSANTTLISLSVR 412
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
R LSD G + +L L+ G N I D L L +L++ S I + G L
Sbjct: 413 RNGLSDAGATTLAASKTLTTLDAGDNTIRDAGARALAANRTLTTLDVRSNEIENAGARAL 472
Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333
L L+L + +V +G+R L L S+ +SF
Sbjct: 473 AANTGLASLDLRNNRVTEAGVRALLANRTLSSLGVSF 509
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 84/324 (25%), Positives = 144/324 (44%), Gaps = 6/324 (1%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+ L ++ +S + + G L L SLD + I D G L + LT+L+ RN
Sbjct: 212 TRLTTLSVSHNRIGAEGAKALAASETLTSLDISEN-GIGDEGACALATNTKLTALNVNRN 270
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
I +G KA A L LD+ G+ L +L +LN++ D + L
Sbjct: 271 R-IGVEGAKALAAGEALTSLDIGGNDIGDEGVRALAANARLTTLNVERTRVGADG-VGAL 328
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ L SL+I + + D+G L LT L++E ++ A +L+A +L LNL
Sbjct: 329 AASKTLTSLRIDSNNIGDAGARALATNTSLTTLHIESNGISPAGAQALAANTTLTTLNLG 388
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
+ D G + +S +L L++ N ++D L L +L+ I D G L
Sbjct: 389 YNGIGDAGAQAWSANTTLISLSVRRNGLSDAGATTLAASKTLTTLDAGDNTIRDAGARAL 448
Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
L L++ ++ ++G R L+ T L S++L +++ +R L +L SL +
Sbjct: 449 AANRTLTTLDVRSNEIENAGARALAANTGLASLDLRNNRVTEAGVRALLANRTLSSLGVS 508
Query: 357 AR---QITDTGLAALTSLTGLTHL 377
+ T++ L A + G+T L
Sbjct: 509 FNYCSKPTESALMAWATRNGVTIL 532
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 60/230 (26%), Positives = 103/230 (44%), Gaps = 3/230 (1%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
+ G +L S+D+ G+D+ D G+ L + L +L+ ++ G+ L LTSL
Sbjct: 281 AAGEALTSLDIGGNDIGDEGVRALAANARLTTLNVERT-RVGADGVGALAASKTLTSLRI 339
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
NN I G +A A +L L +E G L L +LN+ + N I D+
Sbjct: 340 DSNN-IGDAGARALATNTSLTTLHIESNGISPAGAQALAANTTLTTLNLGY-NGIGDAGA 397
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
+ S T L SL + + ++D+G L + LT L+ + A +L+A +L L
Sbjct: 398 QAWSANTTLISLSVRRNGLSDAGATTLAASKTLTTLDAGDNTIRDAGARALAANRTLTTL 457
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
++ ++ + G + L L+L N +T+ + L L SL +
Sbjct: 458 DVRSNEIENAGARALAANTGLASLDLRNNRVTEAGVRALLANRTLSSLGV 507
>gi|320166208|gb|EFW43107.1| tyrosine-protein kinase Src42A [Capsaspora owczarzaki ATCC 30864]
Length = 1869
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 89/297 (29%), Positives = 130/297 (43%), Gaps = 10/297 (3%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL--ERCTRIHGGLVN 150
QI+ GL+ L +L + NN I + AF+GL LV+L L + T I
Sbjct: 118 QITTVPSSAFTGLTALQTL-YLYNNQIATVAINAFSGLTALVQLYLYNNQITSISANA-- 174
Query: 151 LKGLMKLESL--NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTL 208
GL KL +L N W + I S L+ LT L + V S L LQ L L
Sbjct: 175 FSGLSKLNTLQLNNNWLSAIPSSAFTGLTALTQLLLYNNQITTVPSSAFTGLTALQTLYL 234
Query: 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 268
N + + +++ S L +L L L+ Q++ FS + L L+L N ++
Sbjct: 235 YNNQ---IATVAINAFSGLTALVQLRLDTNQITTVPANAFSGLSKLNTLHLYNNWLSAIP 291
Query: 269 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 328
GLT L L LD+ I TGL L+ L L + Q+ + SGL L+
Sbjct: 292 SSAFTGLTALTQLRLDTNQITTVPSSAFTGLTALQTLYLYNNQIITVATNAFSGLAALQV 351
Query: 329 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
+ L I+ +GLS+L +L L ++ +A T LT LT L L+ +IT
Sbjct: 352 LRLDTNQITTVPANAFSGLSALNTLQLSNNWLSAIPSSAFTGLTALTQLQLYNNQIT 408
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 84/297 (28%), Positives = 130/297 (43%), Gaps = 2/297 (0%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
QI+ G+S+L L + +N ITA + AF GL +L LD+
Sbjct: 790 QITTISASAFAGMSSLVQL-YLYSNRITAIFVNAFTGLTHLSLLDISNNQITSLPANAFT 848
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
GL + L++ + N ++ +GLT L++L + +++T + L L L L
Sbjct: 849 GLTAMTQLSL-YNNSLSAVPSSAFTGLTALQALWLYNNQITSVVVNAFTSLTALVQLQLY 907
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
G +T + S L L L LN LS F+ + +L L L N+IT
Sbjct: 908 GNQITTIPASAFSGLSKLSLLQLNNNWLSAIPSSAFTGLTALTQLQLYNNQITTVPSSAF 967
Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 332
GLT L L+L I GL L+ L L++ + + +GLT L ++LS
Sbjct: 968 TGLTALTQLSLYGNQITTISASAFAGLTALQALYLNNNTITTIAANAFAGLTALNWLDLS 1027
Query: 333 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 389
+ I+ + L +L LNL ++ +A T LT LT L ++G RIT A
Sbjct: 1028 GSQITSIPANVFSSLPALAQLNLYNNWLSAVPTSAFTGLTALTQLTMYGNRITTISA 1084
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 105/404 (25%), Positives = 169/404 (41%), Gaps = 42/404 (10%)
Query: 17 SRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQG----SSLLSVDLSGSDVTDS 72
S +T +S AF L Y +N+ W+ I S ++L + L + +T
Sbjct: 68 SNQITSISSSAFTG-----LTALTYLQLNNNWLSAIPSSAFTGLTALTQLQLYNNQITTV 122
Query: 73 GLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLIN 132
+ LQ+L + + QI+ + GL+ L L + NN IT+ AF+GL
Sbjct: 123 PSSAFTGLTALQTL-YLYNNQIATVAINAFSGLTALVQL-YLYNNQITSISANAFSGLSK 180
Query: 133 LVKLDLER------CTRIHGGLVNLK------------------GLMKLESLNIKWCNCI 168
L L L + GL L GL L++L + + N I
Sbjct: 181 LNTLQLNNNWLSAIPSSAFTGLTALTQLLLYNNQITTVPSSAFTGLTALQTLYL-YNNQI 239
Query: 169 TDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG 228
+ SGLT L L++ +++T GL KL L+L ++A + + L
Sbjct: 240 ATVAINAFSGLTALVQLRLDTNQITTVPANAFSGLSKLNTLHLYNNWLSAIPSSAFTGLT 299
Query: 229 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 288
+L L L+ Q++ F+ + +L+ L L N+I GL L+ L LD+ I
Sbjct: 300 ALTQLRLDTNQITTVPSSAFTGLTALQTLYLYNNQIITVATNAFSGLAALQVLRLDTNQI 359
Query: 289 GDEGLVNLTGLCNLKCLELSD---TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 345
+GL L L+LS+ + + SS L+ LT L+ N T + +
Sbjct: 360 TTVPANAFSGLSALNTLQLSNNWLSAIPSSAFTGLTALTQLQLYNNQITTVPSSAFT--- 416
Query: 346 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 389
GL++L++L L QI + A + LT L L L+ +IT A
Sbjct: 417 GLTALQTLYLYNNQIATVAINAFSGLTALVQLYLYNNQITSISA 460
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 82/281 (29%), Positives = 122/281 (43%), Gaps = 1/281 (0%)
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 163
G+ T++ + +N IT+ AF GL L L L GL L L +
Sbjct: 56 GIPATTTILYLSSNQITSISSSAFTGLTALTYLQLNNNWLSAIPSSAFTGLTALTQLQL- 114
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
+ N IT +GLT L++L + +++ I GL L L L +T+ ++
Sbjct: 115 YNNQITTVPSSAFTGLTALQTLYLYNNQIATVAINAFSGLTALVQLYLYNNQITSISANA 174
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
S L L L LN LS F+ + +L L L N+IT GLT L++L L
Sbjct: 175 FSGLSKLNTLQLNNNWLSAIPSSAFTGLTALTQLLLYNNQITTVPSSAFTGLTALQTLYL 234
Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
+ I + +GL L L L Q+ + SGL+ L +++L +S
Sbjct: 235 YNNQIATVAINAFSGLTALVQLRLDTNQITTVPANAFSGLSKLNTLHLYNNWLSAIPSSA 294
Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 384
GL++L L LD QIT +A T LT L L L+ +I
Sbjct: 295 FTGLTALTQLRLDTNQITTVPSSAFTGLTALQTLYLYNNQI 335
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 91/334 (27%), Positives = 149/334 (44%), Gaps = 3/334 (0%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L+ + L G+ +T S+L L + + +I+ + GL++L+ L N
Sbjct: 779 TALVQLQLYGNQITTISASAFAGMSSLVQL-YLYSNRITAIFVNAFTGLTHLSLLDIS-N 836
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT+ AF GL + +L L + GL L++L + + N IT +
Sbjct: 837 NQITSLPANAFTGLTAMTQLSLYNNSLSAVPSSAFTGLTALQALWL-YNNQITSVVVNAF 895
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L LQ+ +++T + GL KL+LL L ++A + + L +L L L
Sbjct: 896 TSLTALVQLQLYGNQITTIPASAFSGLSKLSLLQLNNNWLSAIPSSAFTGLTALTQLQLY 955
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q++ F+ + +L L+L N+IT GLT L++L L++ I
Sbjct: 956 NNQITTVPSSAFTGLTALTQLSLYGNQITTISASAFAGLTALQALYLNNNTITTIAANAF 1015
Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
GL L L+LS +Q+ S S L L +NL +S GL++L L +
Sbjct: 1016 AGLTALNWLDLSGSQITSIPANVFSSLPALAQLNLYNNWLSAVPTSAFTGLTALTQLTMY 1075
Query: 357 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 390
+IT A T L L L L +IT A+
Sbjct: 1076 GNRITTISANAFTGLNALVQLFLQSNQITTISAS 1109
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 92/315 (29%), Positives = 138/315 (43%), Gaps = 31/315 (9%)
Query: 104 GLSNLTSLSFRR--NNAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVNLKGLMKLES 159
G S LT+L+ R NN IT+ AF GL L LDL + T I G GL L
Sbjct: 678 GFSGLTALTDLRLFNNTITSILANAFTGLTKLTYLDLSLNQLTSIPAGA--FSGLTALTQ 735
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
L + + N ++ +GLT L L + +++T GL L L L G +T
Sbjct: 736 L-LLYNNWLSAVPSSAFTGLTALLYLYLYNNQITTVAANAFTGLTALVQLQLYGNQITTI 794
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+ + + SL L L +++ F+ + L +L++ N+IT GLT +
Sbjct: 795 SASAFAGMSSLVQLYLYSNRITAIFVNAFTGLTHLSLLDISNNQITSLPANAFTGLTAMT 854
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL-------- 331
L+L + + TGL L+ L L + Q+ S + + LT L + L
Sbjct: 855 QLSLYNNSLSAVPSSAFTGLTALQALWLYNNQITSVVVNAFTSLTALVQLQLYGNQITTI 914
Query: 332 ---SFTGISDGSLRKL-------------AGLSSLKSLNLDARQITDTGLAALTSLTGLT 375
+F+G+S SL +L GL++L L L QIT +A T LT LT
Sbjct: 915 PASAFSGLSKLSLLQLNNNWLSAIPSSAFTGLTALTQLQLYNNQITTVPSSAFTGLTALT 974
Query: 376 HLDLFGARITDSGAA 390
L L+G +IT A+
Sbjct: 975 QLSLYGNQITTISAS 989
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 90/298 (30%), Positives = 128/298 (42%), Gaps = 10/298 (3%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL--ERCTRIHGGLVN 150
QI+ GL+ L +L + NN I + AF+GL LV+L L + T I
Sbjct: 406 QITTVPSSAFTGLTALQTL-YLYNNQIATVAINAFSGLTALVQLYLYNNQITSISANA-- 462
Query: 151 LKGLMKLESL--NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTL 208
GL KL +L N W + I S +GLT L L + +++T + GL L
Sbjct: 463 FSGLSKLNTLQLNNNWLSAIPSSA---FTGLTALTQLLLYNNQITTVPSSAFTGLTALQF 519
Query: 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 268
L L + +++ S L +L L L+ Q++ FS + L L+L N ++
Sbjct: 520 LYLYNNQIATVAINAFSGLTALVQLRLDTNQITTVPANAFSGLSKLNTLHLYNNWLSAIP 579
Query: 269 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 328
GLT L L LD+ I +GL L L L + Q+ + SGLT L
Sbjct: 580 SSAFTGLTALTQLRLDTNQITTVPANAFSGLTALLYLYLYNNQITTVPANAFSGLTALVQ 639
Query: 329 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
+ L I+ L GLS+L L L +IT + LT LT L LF IT
Sbjct: 640 LQLYGNQITTIPSSALTGLSALTQLLLYNNRITSVPANGFSGLTALTDLRLFNNTITS 697
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 90/301 (29%), Positives = 131/301 (43%), Gaps = 29/301 (9%)
Query: 116 NNAITAQGMKAFAGLINLVKLDL--ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
NN IT AF+GL LV+L L + T I L GL L L + + N IT
Sbjct: 620 NNQITTVPANAFSGLTALVQLQLYGNQITTIPSSA--LTGLSALTQL-LLYNNRITSVPA 676
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL---EGCPVTAACLDSLSALGSL 230
SGLT L L++ + +T GL KLT L+L + + A L+AL L
Sbjct: 677 NGFSGLTALTDLRLFNNTITSILANAFTGLTKLTYLDLSLNQLTSIPAGAFSGLTALTQL 736
Query: 231 FYLN---------------------LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
N L Q++ F+ + +L L L N+IT
Sbjct: 737 LLYNNWLSAVPSSAFTGLTALLYLYLYNNQITTVAANAFTGLTALVQLQLYGNQITTISA 796
Query: 270 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 329
G+++L L L S I + TGL +L L++S+ Q+ S +GLT + +
Sbjct: 797 SAFAGMSSLVQLYLYSNRITAIFVNAFTGLTHLSLLDISNNQITSLPANAFTGLTAMTQL 856
Query: 330 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 389
+L +S GL++L++L L QIT + A TSLT L L L+G +IT A
Sbjct: 857 SLYNNSLSAVPSSAFTGLTALQALWLYNNQITSVVVNAFTSLTALVQLQLYGNQITTIPA 916
Query: 390 A 390
+
Sbjct: 917 S 917
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 85/295 (28%), Positives = 128/295 (43%), Gaps = 6/295 (2%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL--ERCTRIHGGLVN 150
QI+ GLS L +L NN ++A AF GL L +L L + T +
Sbjct: 358 QITTVPANAFSGLSALNTLQLS-NNWLSAIPSSAFTGLTALTQLQLYNNQITTVPSSA-- 414
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
GL L++L + + N I + SGLT L L + +++T GL KL L
Sbjct: 415 FTGLTALQTLYL-YNNQIATVAINAFSGLTALVQLYLYNNQITSISANAFSGLSKLNTLQ 473
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
L ++A + + L +L L L Q++ F+ + +L+ L L N+I +
Sbjct: 474 LNNNWLSAIPSSAFTGLTALTQLLLYNNQITTVPSSAFTGLTALQFLYLYNNQIATVAIN 533
Query: 271 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 330
GLT L L LD+ I +GL L L L + + + +GLT L +
Sbjct: 534 AFSGLTALVQLRLDTNQITTVPANAFSGLSKLNTLHLYNNWLSAIPSSAFTGLTALTQLR 593
Query: 331 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
L I+ +GL++L L L QIT A + LT L L L+G +IT
Sbjct: 594 LDTNQITTVPANAFSGLTALLYLYLYNNQITTVPANAFSGLTALVQLQLYGNQIT 648
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 90/332 (27%), Positives = 134/332 (40%), Gaps = 32/332 (9%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
S + S L + L+ LD N QI+ GL+ L +L + NN I A
Sbjct: 288 SAIPSSAFTGLTALTQLR-LDTN---QITTVPSSAFTGLTALQTL-YLYNNQIITVATNA 342
Query: 127 FAGL--INLVKLDLERCTRIHGGLVNLKGLMKLESLNIK--WCNCITDSDMKPLSGLTNL 182
F+GL + +++LD + T + GL L +L + W + I S L+ LT L
Sbjct: 343 FSGLAALQVLRLDTNQITTVPANA--FSGLSALNTLQLSNNWLSAIPSSAFTGLTALTQL 400
Query: 183 KSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN-------- 234
+ + V S L LQ L L N + V L+AL L+ N
Sbjct: 401 QLYNNQITTVPSSAFTGLTALQTLYLYNNQIATVAINAFSGLTALVQLYLYNNQITSISA 460
Query: 235 --------LNRCQLSDD-----GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 281
LN QL+++ F+ + +L L L N+IT GLT L+ L
Sbjct: 461 NAFSGLSKLNTLQLNNNWLSAIPSSAFTGLTALTQLLLYNNQITTVPSSAFTGLTALQFL 520
Query: 282 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 341
L + I + +GL L L L Q+ + SGL+ L +++L +S
Sbjct: 521 YLYNNQIATVAINAFSGLTALVQLRLDTNQITTVPANAFSGLSKLNTLHLYNNWLSAIPS 580
Query: 342 RKLAGLSSLKSLNLDARQITDTGLAALTSLTG 373
GL++L L LD QIT A + LT
Sbjct: 581 SAFTGLTALTQLRLDTNQITTVPANAFSGLTA 612
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 90/323 (27%), Positives = 138/323 (42%), Gaps = 19/323 (5%)
Query: 72 SGLIHLK--DCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAG 129
+GL HL D SN QI+ GL+ +T LS NN+++A AF G
Sbjct: 824 TGLTHLSLLDISN---------NQITSLPANAFTGLTAMTQLSLY-NNSLSAVPSSAFTG 873
Query: 130 LINLVKLDL---ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
L L L L + + + +L L++L+ + N IT SGL+ L LQ
Sbjct: 874 LTALQALWLYNNQITSVVVNAFTSLTALVQLQ----LYGNQITTIPASAFSGLSKLSLLQ 929
Query: 187 ISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE 246
++ + ++ + GL LT L L +T + + L +L L+L Q++
Sbjct: 930 LNNNWLSAIPSSAFTGLTALTQLQLYNNQITTVPSSAFTGLTALTQLSLYGNQITTISAS 989
Query: 247 KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 306
F+ + +L+ L L N IT GLT L L+L I + L L L
Sbjct: 990 AFAGLTALQALYLNNNTITTIAANAFAGLTALNWLDLSGSQITSIPANVFSSLPALAQLN 1049
Query: 307 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 366
L + + + +GLT L + + I+ S GL++L L L + QIT +
Sbjct: 1050 LYNNWLSAVPTSAFTGLTALTQLTMYGNRITTISANAFTGLNALVQLFLQSNQITTISAS 1109
Query: 367 ALTSLTGLTHLDLFGARITDSGA 389
A T L+ LT L L +IT A
Sbjct: 1110 AFTGLSLLTQLYLSNNQITTISA 1132
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 84/301 (27%), Positives = 124/301 (41%), Gaps = 34/301 (11%)
Query: 15 VYSRCLTEVSLEAFRD-CALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSG 73
+Y+ L+ V AF ALQ L L N++ V+ + +SL +
Sbjct: 858 LYNNSLSAVPSSAFTGLTALQALWL-----YNNQITSVVVNAFTSL------------TA 900
Query: 74 LIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINL 133
L+ L+ N QI+ GLS L+ L NN ++A AF GL L
Sbjct: 901 LVQLQLYGN----------QITTIPASAFSGLSKLSLLQLN-NNWLSAIPSSAFTGLTAL 949
Query: 134 VKLDL--ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 191
+L L + T + GL L L++ + N IT +GLT L++L ++ +
Sbjct: 950 TQLQLYNNQITTVPSSA--FTGLTALTQLSL-YGNQITTISASAFAGLTALQALYLNNNT 1006
Query: 192 VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI 251
+T GL L L+L G +T+ + S+L +L LNL LS F+ +
Sbjct: 1007 ITTIAANAFAGLTALNWLDLSGSQITSIPANVFSSLPALAQLNLYNNWLSAVPTSAFTGL 1066
Query: 252 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 311
+L L + N IT GL L L L S I TGL L L LS+ Q
Sbjct: 1067 TALTQLTMYGNRITTISANAFTGLNALVQLFLQSNQITTISASAFTGLSLLTQLYLSNNQ 1126
Query: 312 V 312
+
Sbjct: 1127 I 1127
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 92/313 (29%), Positives = 125/313 (39%), Gaps = 26/313 (8%)
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
GL+ LT L NN IT AF GL L L L + GL L L
Sbjct: 487 FTGLTALTQL-LLYNNQITTVPSSAFTGLTALQFLYLYNNQIATVAINAFSGLTALVQLR 545
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 221
+ N IT SGL+ L +L + + ++ + GL LT L L+ +T
Sbjct: 546 LD-TNQITTVPANAFSGLSKLNTLHLYNNWLSAIPSSAFTGLTALTQLRLDTNQITTVPA 604
Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 281
++ S L +L YL L Q++ FS + +L L L N+IT L GL+ L L
Sbjct: 605 NAFSGLTALLYLYLYNNQITTVPANAFSGLTALVQLQLYGNQITTIPSSALTGLSALTQL 664
Query: 282 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS---FTGISD 338
L + I +GL L L L + + S +GLT L ++LS T I
Sbjct: 665 LLYNNRITSVPANGFSGLTALTDLRLFNNTITSILANAFTGLTKLTYLDLSLNQLTSIPA 724
Query: 339 GSLRKLAGLSSLKSLN--LDA-------------------RQITDTGLAALTSLTGLTHL 377
G+ L L+ L N L A QIT A T LT L L
Sbjct: 725 GAFSGLTALTQLLLYNNWLSAVPSSAFTGLTALLYLYLYNNQITTVAANAFTGLTALVQL 784
Query: 378 DLFGARITDSGAA 390
L+G +IT A+
Sbjct: 785 QLYGNQITTISAS 797
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 90/205 (43%)
Query: 185 LQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 244
L +S +++T + GL LT L L ++A + + L +L L L Q++
Sbjct: 64 LYLSSNQITSISSSAFTGLTALTYLQLNNNWLSAIPSSAFTGLTALTQLQLYNNQITTVP 123
Query: 245 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 304
F+ + +L+ L L N+I + GLT L L L + I +GL L
Sbjct: 124 SSAFTGLTALQTLYLYNNQIATVAINAFSGLTALVQLYLYNNQITSISANAFSGLSKLNT 183
Query: 305 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 364
L+L++ + + +GLT L + L I+ GL++L++L L QI
Sbjct: 184 LQLNNNWLSAIPSSAFTGLTALTQLLLYNNQITTVPSSAFTGLTALQTLYLYNNQIATVA 243
Query: 365 LAALTSLTGLTHLDLFGARITDSGA 389
+ A + LT L L L +IT A
Sbjct: 244 INAFSGLTALVQLRLDTNQITTVPA 268
>gi|326679785|ref|XP_002660968.2| PREDICTED: hypothetical protein LOC100332407 [Danio rerio]
Length = 537
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 111/401 (27%), Positives = 192/401 (47%), Gaps = 23/401 (5%)
Query: 5 DISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIAS----QGSSLL 60
++++ + + + R L +LE F C LQ L YP ++ + + + + S L
Sbjct: 111 ELAELLLSHMARERLLRPRTLELFFGCPLQKFVLNCYPYTTNELLRQLRAFTCLKHLSFL 170
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
+ L +TD+GL L + S LQ L+ + C +++D L+H+ GL +LT L+ + ++
Sbjct: 171 NSPL----ITDAGLSVLSNLSKLQHLNLSSCSKLTDSCLQHITGLRSLTFLALDQTK-VS 225
Query: 121 AQGMKAF--AGLINLVKLDLERCTRIHGGLVNLKG-LMKLESLNIKWCNCITDSDMKPLS 177
G+ + +G L +L L + L L + +L L+IK SD+ L+
Sbjct: 226 DAGLLLYLQSGSSALCQLSLNQTAITESTLRVLPASVPQLRMLSIKHTKV---SDVSALA 282
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN- 236
L NL++L + + V ++ + L L+ L+L G PV A +L + L L
Sbjct: 283 ELKNLQTLHLDGTGVQENSLQCLASHPSLSALSLAGIPV-ADGNHTLEIIAGLRLTQLTL 341
Query: 237 --RCQLSDDGCEKFSK-IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
R ++D G S+ L++ + ++TD + L +T L+ L+L + + D GL
Sbjct: 342 PGRHSVTDSGLSFLSRQTLLLELDLTDYTQLTDHGITQLSSMTRLKKLSLSNTQVSDSGL 401
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHL-SGLTNLESINLSFTGISDGSLRK-LAGLSSLK 351
L L L+ L L T V S G+ L + L +L+ + L+ T + D +R+ L L
Sbjct: 402 QGLIRLKELQELCLDRTAVTSRGVAALITHLPHLQVMGLASTQVGDTVIRRGLVHCPQLL 461
Query: 352 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
LNL +ITD GL L + L+ ++L G +T G A L
Sbjct: 462 KLNLSRTRITDQGLKFLCRMQ-LSQVNLDGTGVTLVGIANL 501
>gi|224007994|ref|XP_002292956.1| hypothetical protein THAPSDRAFT_16210 [Thalassiosira pseudonana
CCMP1335]
gi|220971082|gb|EED89417.1| hypothetical protein THAPSDRAFT_16210 [Thalassiosira pseudonana
CCMP1335]
Length = 301
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 94/301 (31%), Positives = 139/301 (46%), Gaps = 50/301 (16%)
Query: 133 LVKLDLERCTRI-HGGLVNLKGL-MKLESLNIKWCNCITDSDMKPLS------------- 177
L L L C R+ +VN+ L L ++N+ C C+TD ++ L
Sbjct: 1 LRTLSLANCRRLTDEAVVNVSHLSTSLVAVNLGGCRCLTDRSLEALGGLLGLTKLDLSQV 60
Query: 178 --------GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV---TAACLDSLSA 226
+ NLKSL++ S V D+ +A+ + L L LNL+ C + + A L +
Sbjct: 61 CLRSSWQGKINNLKSLELCYSGVQDNHLAHFRSLPMLEELNLDSCHLGDWSIAHLADNNV 120
Query: 227 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 286
+ ++ L+L +SD G K ++ +K L+L + +T L HL +T LE LNLDS
Sbjct: 121 IPNITSLDLADADISDFGLSKIAQFKQMKRLSLFYCNVTSAGLRHLSSMTKLEVLNLDSR 180
Query: 287 GIGDEGLVNLTGLC-----------------------NLKCLELSDTQVGSSGLRHLSGL 323
IGDEGL +L L L+ LEL VG G HL+ +
Sbjct: 181 EIGDEGLKHLRDLPLQSLDVFSGRVTDLGYGCIRLIKTLQSLELCGGGVGDIGCTHLATI 240
Query: 324 TNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 382
NL S+NLS I++ LA LS+LK+LNL +T L + L+ L L L+G
Sbjct: 241 PNLTSLNLSQNERITNRGAASLAALSNLKALNLSNTAVTPDALRYFSDLSKLKSLALYGC 300
Query: 383 R 383
R
Sbjct: 301 R 301
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 83/147 (56%), Gaps = 4/147 (2%)
Query: 250 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG---LCNLKCLE 306
KI +LK L L ++ + D L H + L LE LNLDSC +GD + +L + N+ L+
Sbjct: 69 KINNLKSLELCYSGVQDNHLAHFRSLPMLEELNLDSCHLGDWSIAHLADNNVIPNITSLD 128
Query: 307 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 366
L+D + GL ++ ++ ++L + ++ LR L+ ++ L+ LNLD+R+I D GL
Sbjct: 129 LADADISDFGLSKIAQFKQMKRLSLFYCNVTSAGLRHLSSMTKLEVLNLDSREIGDEGLK 188
Query: 367 ALTSLTGLTHLDLFGARITDSGAAYLR 393
L L L LD+F R+TD G +R
Sbjct: 189 HLRDLP-LQSLDVFSGRVTDLGYGCIR 214
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 114/234 (48%), Gaps = 8/234 (3%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRG---LSNLTSLSF 113
++L S++L S V D+ L H + L+ L+ + C + D + HL + N+TSL
Sbjct: 71 NNLKSLELCYSGVQDNHLAHFRSLPMLEELNLDSC-HLGDWSIAHLADNNVIPNITSLDL 129
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
+ I+ G+ A + +L L C GL +L + KLE LN+ I D +
Sbjct: 130 A-DADISDFGLSKIAQFKQMKRLSLFYCNVTSAGLRHLSSMTKLEVLNLD-SREIGDEGL 187
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
K L L L+SL + +VTD G ++ ++ L L L G V L+ + +L L
Sbjct: 188 KHLRDLP-LQSLDVFSGRVTDLGYGCIRLIKTLQSLELCGGGVGDIGCTHLATIPNLTSL 246
Query: 234 NLNRCQ-LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 286
NL++ + +++ G + + +LK LNL +T + L + L+ L+SL L C
Sbjct: 247 NLSQNERITNRGAASLAALSNLKALNLSNTAVTPDALRYFSDLSKLKSLALYGC 300
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 48/97 (49%), Gaps = 3/97 (3%)
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG---LSSLKSLNLDA 357
NLK LEL + V + L H L LE +NL + D S+ LA + ++ SL+L
Sbjct: 72 NLKSLELCYSGVQDNHLAHFRSLPMLEELNLDSCHLGDWSIAHLADNNVIPNITSLDLAD 131
Query: 358 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRS 394
I+D GL+ + + L LF +T +G +L S
Sbjct: 132 ADISDFGLSKIAQFKQMKRLSLFYCNVTSAGLRHLSS 168
Score = 42.0 bits (97), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 62/127 (48%), Gaps = 7/127 (5%)
Query: 17 SRCLTEVSLEAFRDCALQ--DLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGL 74
SR + + L+ RD LQ D+ G+ + + +I +L S++L G V D G
Sbjct: 179 SREIGDEGLKHLRDLPLQSLDVFSGRVTDLGYGCIRLI----KTLQSLELCGGGVGDIGC 234
Query: 75 IHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134
HL NL SL+ + +I++ G L LSNL +L+ N A+T ++ F+ L L
Sbjct: 235 THLATIPNLTSLNLSQNERITNRGAASLAALSNLKALNL-SNTAVTPDALRYFSDLSKLK 293
Query: 135 KLDLERC 141
L L C
Sbjct: 294 SLALYGC 300
>gi|46447550|ref|YP_008915.1| hypothetical protein pc1916 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46401191|emb|CAF24640.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 310
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 93/275 (33%), Positives = 130/275 (47%), Gaps = 56/275 (20%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
L+ + +T++ L+ LKDC NL++L C ++D GLEHL L+ L L
Sbjct: 84 LNQAYLTNAHLLALKDCKNLKALYLEACQALTDDGLEHLTLLTALQHLDL---------- 133
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
+G NL GLV+L L+ L+ L + C +TD + L+ LT L+
Sbjct: 134 ----SGCWNLTD----------AGLVHLTPLVGLQHLKLNACYNLTDDGLVHLTPLTALQ 179
Query: 184 SLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QL 240
L +S C +TD+G+A+LK L L L L C +T A L L+ L L YL L+ C L
Sbjct: 180 HLDLSDCMNLTDAGLAHLKPLTALQHLGLSCCENLTDAGLAHLAPLTGLQYLALSDCMNL 239
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGL 299
+DDG LVHLK LT L+ LNL +C + D GL +LT L
Sbjct: 240 TDDG------------------------LVHLKPLTALQHLNLRNCRNVTDAGLAHLTPL 275
Query: 300 CNLKCLELSD----TQVGSSGLRHLSGLTNLESIN 330
L+ L L T G + + L+ NL IN
Sbjct: 276 KALQQLNLRRCDKVTNTGLARFKTLAASLNLRIIN 310
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 80/199 (40%), Positives = 113/199 (56%), Gaps = 9/199 (4%)
Query: 201 KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNL 259
K ++ L LN +T A L +L +L L L CQ L+DDG E + + +L+ L+L
Sbjct: 76 KKIEGLNFLN--QAYLTNAHLLALKDCKNLKALYLEACQALTDDGLEHLTLLTALQHLDL 133
Query: 260 -GFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSG 316
G +TD LVHL L L+ L L++C + D+GLV+LT L L+ L+LSD + +G
Sbjct: 134 SGCWNLTDAGLVHLTPLVGLQHLKLNACYNLTDDGLVHLTPLTALQHLDLSDCMNLTDAG 193
Query: 317 LRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGL 374
L HL LT L+ + LS ++D L LA L+ L+ L L D +TD GL L LT L
Sbjct: 194 LAHLKPLTALQHLGLSCCENLTDAGLAHLAPLTGLQYLALSDCMNLTDDGLVHLKPLTAL 253
Query: 375 THLDLFGAR-ITDSGAAYL 392
HL+L R +TD+G A+L
Sbjct: 254 QHLNLRNCRNVTDAGLAHL 272
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 84/246 (34%), Positives = 122/246 (49%), Gaps = 30/246 (12%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGC 214
K+E LN +T++ + L NLK+L + +C +TD G+ +L L L L+L GC
Sbjct: 77 KIEGLNFLNQAYLTNAHLLALKDCKNLKALYLEACQALTDDGLEHLTLLTALQHLDLSGC 136
Query: 215 -PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLG-FNEITDECLVH 271
+T A L L+ L L +L LN C L+DDG + + +L+ L+L +TD L H
Sbjct: 137 WNLTDAGLVHLTPLVGLQHLKLNACYNLTDDGLVHLTPLTALQHLDLSDCMNLTDAGLAH 196
Query: 272 LKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESI 329
LK LT L+ L L C + D GL +L L L+ L LSD + GL HL LT L+ +
Sbjct: 197 LKPLTALQHLGLSCCENLTDAGLAHLAPLTGLQYLALSDCMNLTDDGLVHLKPLTALQHL 256
Query: 330 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA-RITDSG 388
NL + R +TD GLA LT L L L+L ++T++G
Sbjct: 257 NLR-----------------------NCRNVTDAGLAHLTPLKALQQLNLRRCDKVTNTG 293
Query: 389 AAYLRS 394
A ++
Sbjct: 294 LARFKT 299
>gi|290970038|ref|XP_002668017.1| predicted protein [Naegleria gruberi]
gi|284081041|gb|EFC35273.1| predicted protein [Naegleria gruberi]
Length = 306
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 120/235 (51%), Gaps = 2/235 (0%)
Query: 160 LNIKWCNCITDS--DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
+N+K + DS +K +S + L SL IS +++ G+ ++ G+++LT L++ +
Sbjct: 55 INLKVFRYLLDSFEKLKFISDMKRLTSLDISFNQIGVQGVKFISGMKQLTSLDISFNQAS 114
Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 277
+S + L L +++ + D+G + S++ L LNL +NEI DE ++ +
Sbjct: 115 DEGAKYISEMKQLTSLGISKNLIGDEGAKYISEMKQLTSLNLYYNEICDEGAKYISEMEQ 174
Query: 278 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 337
L SL++ S I EG+ + + L L + +G G +++S + L S+N++ I
Sbjct: 175 LTSLDISSNLIDVEGVKFIKEMKQLTSLNIYYNGIGVEGAKYISEMKQLTSLNITNNEIG 234
Query: 338 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
D + ++ + L SL + QI D G + + LT L++ G I D GA Y+
Sbjct: 235 DEGAKYISEMKQLISLIISRNQIGDEGAKYICEMEQLTSLNISGNEIGDEGAKYI 289
Score = 90.9 bits (224), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 117/226 (51%), Gaps = 1/226 (0%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
+ +L SL+I + N I +K +SG+ L SL IS ++ +D G Y+ +++LT L +
Sbjct: 76 MKRLTSLDISF-NQIGVQGVKFISGMKQLTSLDISFNQASDEGAKYISEMKQLTSLGISK 134
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
+ +S + L LNL ++ D+G + S++ L L++ N I E + +K
Sbjct: 135 NLIGDEGAKYISEMKQLTSLNLYYNEICDEGAKYISEMEQLTSLDISSNLIDVEGVKFIK 194
Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333
+ L SLN+ GIG EG ++ + L L +++ ++G G +++S + L S+ +S
Sbjct: 195 EMKQLTSLNIYYNGIGVEGAKYISEMKQLTSLNITNNEIGDEGAKYISEMKQLISLIISR 254
Query: 334 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
I D + + + L SLN+ +I D G ++ + LT LD+
Sbjct: 255 NQIGDEGAKYICEMEQLTSLNISGNEIGDEGAKYISDMKQLTSLDI 300
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 66/237 (27%), Positives = 115/237 (48%), Gaps = 6/237 (2%)
Query: 99 LEHLRGLSNLTSL--SFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMK 156
L+ + + LTSL SF N I QG+K +G+ L LD+ G + + +
Sbjct: 70 LKFISDMKRLTSLDISF---NQIGVQGVKFISGMKQLTSLDISFNQASDEGAKYISEMKQ 126
Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
L SL I N I D K +S + L SL + +++ D G Y+ +++LT L++ +
Sbjct: 127 LTSLGIS-KNLIGDEGAKYISEMKQLTSLNLYYNEICDEGAKYISEMEQLTSLDISSNLI 185
Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 276
+ + + L LN+ + +G + S++ L LN+ NEI DE ++ +
Sbjct: 186 DVEGVKFIKEMKQLTSLNIYYNGIGVEGAKYISEMKQLTSLNITNNEIGDEGAKYISEMK 245
Query: 277 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333
L SL + IGDEG + + L L +S ++G G +++S + L S+++SF
Sbjct: 246 QLISLIISRNQIGDEGAKYICEMEQLTSLNISGNEIGDEGAKYISDMKQLTSLDISF 302
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 80/314 (25%), Positives = 141/314 (44%), Gaps = 38/314 (12%)
Query: 6 ISQQIFN------ELV--YSRCLTEVSLEAFRDCALQD--LCLGQYPGVNDKWMDV-IAS 54
IS+Q FN +LV + + TE +E F ++ + L + + D + + S
Sbjct: 15 ISKQFFNVIKERSKLVIQFKQKFTEKRVELFMKSQFRNRIINLKVFRYLLDSFEKLKFIS 74
Query: 55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
L S+D+S + + G+ + L SLD +F Q SD G +++ + LTSL
Sbjct: 75 DMKRLTSLDISFNQIGVQGVKFISGMKQLTSLDISFN-QASDEGAKYISEMKQLTSLGIS 133
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
+ N I +G K + + L L+L + N I D K
Sbjct: 134 K-NLIGDEGAKYISEMKQLTSLNL-------------------------YYNEICDEGAK 167
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
+S + L SL IS + + G+ ++K +++LT LN+ + +S + L LN
Sbjct: 168 YISEMEQLTSLDISSNLIDVEGVKFIKEMKQLTSLNIYYNGIGVEGAKYISEMKQLTSLN 227
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
+ ++ D+G + S++ L L + N+I DE ++ + L SLN+ IGDEG
Sbjct: 228 ITNNEIGDEGAKYISEMKQLISLIISRNQIGDEGAKYICEMEQLTSLNISGNEIGDEGAK 287
Query: 295 NLTGLCNLKCLELS 308
++ + L L++S
Sbjct: 288 YISDMKQLTSLDIS 301
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 63/127 (49%)
Query: 267 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 326
E L + + L SL++ IG +G+ ++G+ L L++S Q G +++S + L
Sbjct: 68 EKLKFISDMKRLTSLDISFNQIGVQGVKFISGMKQLTSLDISFNQASDEGAKYISEMKQL 127
Query: 327 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
S+ +S I D + ++ + L SLNL +I D G ++ + LT LD+ I
Sbjct: 128 TSLGISKNLIGDEGAKYISEMKQLTSLNLYYNEICDEGAKYISEMEQLTSLDISSNLIDV 187
Query: 387 SGAAYLR 393
G +++
Sbjct: 188 EGVKFIK 194
>gi|290974552|ref|XP_002670009.1| predicted protein [Naegleria gruberi]
gi|284083563|gb|EFC37265.1| predicted protein [Naegleria gruberi]
Length = 445
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 78/338 (23%), Positives = 148/338 (43%), Gaps = 27/338 (7%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
L +D+ G+++ + G ++ + L L+ I + G++++ G+ LT L+ N
Sbjct: 63 KQLTQLDIDGNNIDEEGAKYISEMQYLAILNM-LGNNIGNEGVKYISGMKQLTHLNVSEN 121
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N I G+K + L L++ + N I D K +
Sbjct: 122 N-IGLDGVKYIVEMKQLTHLNIGQ-------------------------NSIGDEGAKLI 155
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+T L L I ++ GI ++ L KLT LN+ + +S + L YL ++
Sbjct: 156 GEMTQLLDLCIFYCGISSEGIKHISKLDKLTDLNISSNMLYDDSTKYISGMNQLTYLRIH 215
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
+ D+G + K+ L +N+ NE+T E + L GL L +++ S IGD G +
Sbjct: 216 DNNIGDEGAKFLGKMKQLTGINIWRNELTAEGVKFLTGLDKLTEIDISSNNIGDNGAKYI 275
Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
+ + L L++SD +G G +++ + L + L I + ++ L L L++
Sbjct: 276 SEMKQLTNLDVSDNNIGEEGAKYIGNMKQLTILTLWKNNIRGEGAKYISKLEKLTELDIS 335
Query: 357 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRS 394
I + G ++ ++ L LD+ I + GA Y++
Sbjct: 336 ENHIDEKGAKYISEMSQLNALDISVNIIGNQGAKYIKE 373
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 106/221 (47%)
Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
D K L L L L I + + + G Y+ +Q L +LN+ G + + +S + L
Sbjct: 55 DCKKLGLLKQLTQLDIDGNNIDEEGAKYISEMQYLAILNMLGNNIGNEGVKYISGMKQLT 114
Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
+LN++ + DG + ++ L LN+G N I DE + +T L L + CGI E
Sbjct: 115 HLNVSENNIGLDGVKYIVEMKQLTHLNIGQNSIGDEGAKLIGEMTQLLDLCIFYCGISSE 174
Query: 292 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 351
G+ +++ L L L +S + +++SG+ L + + I D + L + L
Sbjct: 175 GIKHISKLDKLTDLNISSNMLYDDSTKYISGMNQLTYLRIHDNNIGDEGAKFLGKMKQLT 234
Query: 352 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
+N+ ++T G+ LT L LT +D+ I D+GA Y+
Sbjct: 235 GINIWRNELTAEGVKFLTGLDKLTEIDISSNNIGDNGAKYI 275
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 106/229 (46%), Gaps = 14/229 (6%)
Query: 90 FCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLV 149
F IS G++H+ L LT L+ +N + K +G+ L L RIH +
Sbjct: 167 FYCGISSEGIKHISKLDKLTDLNIS-SNMLYDDSTKYISGMNQLTYL------RIHDNNI 219
Query: 150 NLKG------LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGL 203
+G + +L +NI W N +T +K L+GL L + IS + + D+G Y+ +
Sbjct: 220 GDEGAKFLGKMKQLTGINI-WRNELTAEGVKFLTGLDKLTEIDISSNNIGDNGAKYISEM 278
Query: 204 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE 263
++LT L++ + + + L L L + + +G + SK+ L L++ N
Sbjct: 279 KQLTNLDVSDNNIGEEGAKYIGNMKQLTILTLWKNNIRGEGAKYISKLEKLTELDISENH 338
Query: 264 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 312
I ++ ++ ++ L +L++ IG++G + + L L + D +
Sbjct: 339 IDEKGAKYISEMSQLNALDISVNIIGNQGAKYIKEMKQLTDLLIWDNNI 387
>gi|209154162|gb|ACI33313.1| F-box/LRR-repeat protein 14 [Salmo salar]
Length = 403
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 108/314 (34%), Positives = 165/314 (52%), Gaps = 32/314 (10%)
Query: 101 HLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKL 157
H RG+ + LS RR+ + QGM N+ L+L C + G ++ + L
Sbjct: 69 HTRGIKKVQILSLRRSLSYVIQGMP------NIESLNLCGCFNLTDNGLGHAFVQDIPSL 122
Query: 158 ESLNIKWCNCITDSDMKPLSG-LTNLKSLQIS-CSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LN+ C ITDS + ++ L NL+ L++ S +T++G+ + GL KL LNL C
Sbjct: 123 RILNLSLCKPITDSSLGRIAQYLKNLEVLELGGLSNITNTGLLLIAWGLHKLKSLNLRSC 182
Query: 215 PVTA-------ACLDSLSALGSLF--YLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-N 262
+ A + +A G LF L L CQ L+D + SK + +LKVLNL F
Sbjct: 183 RHVSDVGIGHLAGMTRSAAEGCLFLEQLTLQDCQKLTDLSLKHVSKGLANLKVLNLSFCG 242
Query: 263 EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRH 319
I+D ++HL +T+L SLNL SC I D G+++L G L L++S ++G L +
Sbjct: 243 GISDSGMIHLSNMTHLWSLNLRSCDNISDTGIMHLAMGSLQLSGLDVSFCDKIGDQSLAY 302
Query: 320 LS-GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALT-SLTGLT 375
++ GL L+S++L ISD + R + + LK+LN+ +ITD GL + LT LT
Sbjct: 303 IAQGLYQLKSLSLCSCHISDDGINRMVRQMHELKTLNIGQCVRITDKGLELIADHLTQLT 362
Query: 376 HLDLFG-ARITDSG 388
+DL+G +IT G
Sbjct: 363 GIDLYGCTKITKRG 376
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 98/315 (31%), Positives = 163/315 (51%), Gaps = 40/315 (12%)
Query: 81 SNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAG-LINLVKLD 137
N++SL+ C ++D GL H ++ + +L L+ IT + A L NL L+
Sbjct: 93 PNIESLNLCGCFNLTDNGLGHAFVQDIPSLRILNLSLCKPITDSSLGRIAQYLKNLEVLE 152
Query: 138 LERCTRIHGGLVNLK---------GLMKLESLNIKWCNCITDSDMKPLSGLTN------- 181
L GGL N+ GL KL+SLN++ C ++D + L+G+T
Sbjct: 153 L-------GGLSNITNTGLLLIAWGLHKLKSLNLRSCRHVSDVGIGHLAGMTRSAAEGCL 205
Query: 182 -LKSLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNR 237
L+ L + C K+TD + ++ KGL L +LNL C ++ + + LS + L+ LNL
Sbjct: 206 FLEQLTLQDCQKLTDLSLKHVSKGLANLKVLNLSFCGGISDSGMIHLSNMTHLWSLNLRS 265
Query: 238 C-QLSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEG 292
C +SD G + +GSL++ L++ F ++I D+ L ++ +GL L+SL+L SC I D+G
Sbjct: 266 CDNISDTGIMHLA-MGSLQLSGLDVSFCDKIGDQSLAYIAQGLYQLKSLSLCSCHISDDG 324
Query: 293 LVNLT-GLCNLKCLELSD-TQVGSSGLRHLS-GLTNLESINL-SFTGISDGSLRKLAGLS 348
+ + + LK L + ++ GL ++ LT L I+L T I+ L ++ L
Sbjct: 325 INRMVRQMHELKTLNIGQCVRITDKGLELIADHLTQLTGIDLYGCTKITKRGLERITQLP 384
Query: 349 SLKSLNLDARQITDT 363
LK LNL Q+T++
Sbjct: 385 CLKVLNLGLWQMTES 399
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 89/286 (31%), Positives = 142/286 (49%), Gaps = 33/286 (11%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEH 101
+ D + IA +L ++L G S++T++GL+ + L+SL+ C +SD G+ H
Sbjct: 133 ITDSSLGRIAQYLKNLEVLELGGLSNITNTGLLLIAWGLHKLKSLNLRSCRHVSDVGIGH 192
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNL-KGLMKLES 159
L G++ A G + L +L L+ C ++ L ++ KGL L+
Sbjct: 193 LAGMTR-----------------SAAEGCLFLEQLTLQDCQKLTDLSLKHVSKGLANLKV 235
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK-GLQKLTLLNLEGCPVT 217
LN+ +C I+DS M LS +T+L SL + SC ++D+GI +L G +L+ L++ C
Sbjct: 236 LNLSFCGGISDSGMIHLSNMTHLWSLNLRSCDNISDTGIMHLAMGSLQLSGLDVSFCDKI 295
Query: 218 AACLDSLSALGSLFY----LNLNRCQLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVH 271
SL+ + Y L+L C +SDDG + + + LK LN+G ITD+ L
Sbjct: 296 GD--QSLAYIAQGLYQLKSLSLCSCHISDDGINRMVRQMHELKTLNIGQCVRITDKGLEL 353
Query: 272 LK-GLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSS 315
+ LT L ++L C I GL +T L LK L L Q+ S
Sbjct: 354 IADHLTQLTGIDLYGCTKITKRGLERITQLPCLKVLNLGLWQMTES 399
>gi|320165725|gb|EFW42624.1| hypothetical protein CAOG_07756 [Capsaspora owczarzaki ATCC 30864]
Length = 880
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 110/373 (29%), Positives = 156/373 (41%), Gaps = 51/373 (13%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR 103
+N+ W+ I S + L+ LI L+ LD N QI+
Sbjct: 234 LNNNWLSAIPSSAFTGLT-----------ALIQLR-------LDTN---QITTVPANAFS 272
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL--ERCTRIHGGLVNLKGLMKLESLN 161
GL+ L L + NN IT AF+G LV+L L + T I L GL L L
Sbjct: 273 GLTALIYL-YLYNNQITTVATNAFSGPTALVQLQLYGNQITTIPSSA--LTGLSALTQLY 329
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL---EGCPVTA 218
+ + N IT SGLT L L++S + +T GL KLT L+L + + A
Sbjct: 330 L-YNNQITSVPANGFSGLTALTDLRLSNNTITSILANAFTGLTKLTYLDLSLNQLTSIPA 388
Query: 219 ACLDSLSALG---------------------SLFYLNLNRCQLSDDGCEKFSKIGSLKVL 257
L+AL +L YL LN Q++ F+ + +L L
Sbjct: 389 GAFSGLTALTQLLLFNNWLSAVPSSAFTGLTALIYLYLNNNQITTVAANAFTGLTALVQL 448
Query: 258 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 317
L N+IT GL+ L L L S I + TGL +L LELS+ Q+ S
Sbjct: 449 QLYGNQITTIPASAFAGLSALVQLYLYSNRITAIFVNAFTGLTHLSLLELSNNQITSLPA 508
Query: 318 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 377
+GLT + ++L +S GL++L++L L QIT A T LT L L
Sbjct: 509 NAFAGLTAMTQLSLYNNSLSAVPSSAFTGLTALQALYLYNNQITTVAANAFTGLTALVQL 568
Query: 378 DLFGARITDSGAA 390
L+ +IT A+
Sbjct: 569 HLYRNQITTIPAS 581
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 97/333 (29%), Positives = 149/333 (44%), Gaps = 9/333 (2%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L+ + L G+ +T L S L L + + QI+ GL+ LT L N
Sbjct: 299 TALVQLQLYGNQITTIPSSALTGLSALTQL-YLYNNQITSVPANGFSGLTALTDLRLS-N 356
Query: 117 NAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVN-LKGLMKLESLNIKWCNCITDSDM 173
N IT+ AF GL L LDL + T I G + L L +L N W + + S
Sbjct: 357 NTITSILANAFTGLTKLTYLDLSLNQLTSIPAGAFSGLTALTQLLLFN-NWLSAVPSSAF 415
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
+GLT L L ++ +++T GL L L L G +T + + L +L L
Sbjct: 416 ---TGLTALIYLYLNNNQITTVAANAFTGLTALVQLQLYGNQITTIPASAFAGLSALVQL 472
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
L +++ F+ + L +L L N+IT GLT + L+L + +
Sbjct: 473 YLYSNRITAIFVNAFTGLTHLSLLELSNNQITSLPANAFAGLTAMTQLSLYNNSLSAVPS 532
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
TGL L+ L L + Q+ + +GLT L ++L I+ AGLS+L L
Sbjct: 533 SAFTGLTALQALYLYNNQITTVAANAFTGLTALVQLHLYRNQITTIPASAFAGLSALVQL 592
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
L++ +IT A SLT LT+LD+ +IT
Sbjct: 593 YLNSNRITTIFANAFPSLTKLTYLDISNNQITS 625
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 100/323 (30%), Positives = 132/323 (40%), Gaps = 30/323 (9%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVN 150
QI+ GL+ L L RN IT AFAGL LV+L L R T I
Sbjct: 550 QITTVAANAFTGLTALVQLHLYRNQ-ITTIPASAFAGLSALVQLYLNSNRITTIFANA-- 606
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS---CSKVTDSGIAYLKGLQKLT 207
L KL L+I N IT +GLT + L + S V S L LQ L
Sbjct: 607 FPSLTKLTYLDIS-NNQITSLPANAFTGLTAMTQLHLYNNLFSTVPSSAFTGLTALQALF 665
Query: 208 LLNLEGCPVTAACLDSLSALGSL-FYLNL---------------NRCQLSDD-----GCE 246
L N + V A SL+AL L Y NL N QL ++
Sbjct: 666 LFNNQISSVAANAFTSLTALIQLQLYGNLITTIPAGAFSGLSKLNLLQLYNNWLSAIPSS 725
Query: 247 KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 306
F+ + +L L L N+IT GLT L L+L I GL L+ L
Sbjct: 726 AFTGLTALTQLRLDTNQITTVPANAFSGLTALIYLSLYGNQITTISASAFAGLTALQALY 785
Query: 307 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 366
L+D + + +GLT L ++LS + I+ + L +L LNL ++ +
Sbjct: 786 LNDNTITTIAANAFAGLTALNWLDLSDSQITSIPANVFSSLPALAQLNLYNNWLSAVPTS 845
Query: 367 ALTSLTGLTHLDLFGARITDSGA 389
A T LT LT L ++G RIT A
Sbjct: 846 AFTGLTALTQLTMYGNRITTISA 868
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 94/375 (25%), Positives = 159/375 (42%), Gaps = 35/375 (9%)
Query: 46 DKWMDVIASQG----SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEH 101
+ W+ + S ++L+ + L+ + +T + L L + QI+
Sbjct: 404 NNWLSAVPSSAFTGLTALIYLYLNNNQITTVAANAFTGLTALVQLQL-YGNQITTIPASA 462
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVNLKGLMKLES 159
GLS L L + +N ITA + AF GL +L L+L + T + GL +
Sbjct: 463 FAGLSALVQL-YLYSNRITAIFVNAFTGLTHLSLLELSNNQITSLPANA--FAGLTAMTQ 519
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
L++ + N ++ +GLT L++L + +++T GL L L+L +T
Sbjct: 520 LSL-YNNSLSAVPSSAFTGLTALQALYLYNNQITTVAANAFTGLTALVQLHLYRNQITTI 578
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+ + L +L L LN +++ F + L L++ N+IT GLT +
Sbjct: 579 PASAFAGLSALVQLYLNSNRITTIFANAFPSLTKLTYLDISNNQITSLPANAFTGLTAMT 638
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL-------- 331
L+L + TGL L+ L L + Q+ S + LT L + L
Sbjct: 639 QLHLYNNLFSTVPSSAFTGLTALQALFLFNNQISSVAANAFTSLTALIQLQLYGNLITTI 698
Query: 332 ---SFTGISDGSLRKL-------------AGLSSLKSLNLDARQITDTGLAALTSLTGLT 375
+F+G+S +L +L GL++L L LD QIT A + LT L
Sbjct: 699 PAGAFSGLSKLNLLQLYNNWLSAIPSSAFTGLTALTQLRLDTNQITTVPANAFSGLTALI 758
Query: 376 HLDLFGARITDSGAA 390
+L L+G +IT A+
Sbjct: 759 YLSLYGNQITTISAS 773
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 94/322 (29%), Positives = 133/322 (41%), Gaps = 26/322 (8%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
QI+ GL+ L L + NN I + AF+GL L L L I
Sbjct: 142 QITTVPSSAFTGLTALQIL-YLHNNQIATVAINAFSGLTALQTLYLYNNQIITVATNAFS 200
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
GL L+ L + N IT SGL+ L +LQ++ + ++ + GL L L L+
Sbjct: 201 GLAALQVLRLD-TNQITTVPANAFSGLSKLNTLQLNNNWLSAIPSSAFTGLTALIQLRLD 259
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
+T ++ S L +L YL L Q++ FS +L L L N+IT L
Sbjct: 260 TNQITTVPANAFSGLTALIYLYLYNNQITTVATNAFSGPTALVQLQLYGNQITTIPSSAL 319
Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 332
GL+ L L L + I +GL L L LS+ + S +GLT L ++LS
Sbjct: 320 TGLSALTQLYLYNNQITSVPANGFSGLTALTDLRLSNNTITSILANAFTGLTKLTYLDLS 379
Query: 333 ---FTGISDGSLRKL---------------------AGLSSLKSLNLDARQITDTGLAAL 368
T I G+ L GL++L L L+ QIT A
Sbjct: 380 LNQLTSIPAGAFSGLTALTQLLLFNNWLSAVPSSAFTGLTALIYLYLNNNQITTVAANAF 439
Query: 369 TSLTGLTHLDLFGARITDSGAA 390
T LT L L L+G +IT A+
Sbjct: 440 TGLTALVQLQLYGNQITTIPAS 461
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 79/277 (28%), Positives = 117/277 (42%), Gaps = 3/277 (1%)
Query: 103 RGLSNLTSLSFR--RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 160
+LT L++ NN IT+ AF GL + +L L GL L++L
Sbjct: 605 NAFPSLTKLTYLDISNNQITSLPANAFTGLTAMTQLHLYNNLFSTVPSSAFTGLTALQAL 664
Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 220
+ N I+ + LT L LQ+ + +T GL KL LL L ++A
Sbjct: 665 -FLFNNQISSVAANAFTSLTALIQLQLYGNLITTIPAGAFSGLSKLNLLQLYNNWLSAIP 723
Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 280
+ + L +L L L+ Q++ FS + +L L+L N+IT GLT L++
Sbjct: 724 SSAFTGLTALTQLRLDTNQITTVPANAFSGLTALIYLSLYGNQITTISASAFAGLTALQA 783
Query: 281 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 340
L L+ I GL L L+LSD+Q+ S S L L +NL +S
Sbjct: 784 LYLNDNTITTIAANAFAGLTALNWLDLSDSQITSIPANVFSSLPALAQLNLYNNWLSAVP 843
Query: 341 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 377
GL++L L + +IT A T L L L
Sbjct: 844 TSAFTGLTALTQLTMYGNRITTISANAFTGLNALVQL 880
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 86/311 (27%), Positives = 127/311 (40%), Gaps = 33/311 (10%)
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINL--VKLDLERCTRIHGGLVNLKGLMKLESL- 160
G+ T+ + ++N IT+ AF GL L ++LD + T + GL L +L
Sbjct: 56 GIPATTTTLYLQSNQITSISSSAFTGLTALTYMRLDTNQITTVPANA--FSGLSTLNTLQ 113
Query: 161 -NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
N W + I S +GLT L L ++ +++T + GL L +L L +
Sbjct: 114 LNNNWLSAIPSSAF---TGLTALIQLLLNNNQITTVPSSAFTGLTALQILYLHNNQIATV 170
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT-------------- 265
+++ S L +L L L Q+ FS + +L+VL L N+IT
Sbjct: 171 AINAFSGLTALQTLYLYNNQIITVATNAFSGLAALQVLRLDTNQITTVPANAFSGLSKLN 230
Query: 266 -----DECLVHLK-----GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 315
+ L + GLT L L LD+ I +GL L L L + Q+ +
Sbjct: 231 TLQLNNNWLSAIPSSAFTGLTALIQLRLDTNQITTVPANAFSGLTALIYLYLYNNQITTV 290
Query: 316 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 375
SG T L + L I+ L GLS+L L L QIT + LT LT
Sbjct: 291 ATNAFSGPTALVQLQLYGNQITTIPSSALTGLSALTQLYLYNNQITSVPANGFSGLTALT 350
Query: 376 HLDLFGARITD 386
L L IT
Sbjct: 351 DLRLSNNTITS 361
>gi|432942786|ref|XP_004083072.1| PREDICTED: F-box/LRR-repeat protein 14-like [Oryzias latipes]
Length = 400
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 101/308 (32%), Positives = 169/308 (54%), Gaps = 26/308 (8%)
Query: 81 SNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAG-LINLVKLD 137
N++SL+ + C ++D GL H ++ + +L L+ IT + A L NL L+
Sbjct: 90 PNIESLNLSGCYNLTDNGLGHAFVQEIPSLRVLNLSLCKQITDSSLGRIAQYLKNLEMLE 149
Query: 138 LERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT--------NLKSLQI 187
L C+ I G L+ GL +L+SLN++ C ++D + L+G+T NL+ L +
Sbjct: 150 LGGCSNITNTGLLLVAWGLHRLKSLNLRSCRHVSDVGIGHLAGMTRSAAEGCLNLEYLTL 209
Query: 188 S-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDD 243
C K+TD + ++ KGL KL +LNL C ++ A + LS +GSL+ LNL C +SD
Sbjct: 210 QDCQKLTDLSLKHISKGLTKLRVLNLSFCGGISDAGMIHLSHMGSLWSLNLRSCDNISDT 269
Query: 244 GCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGLVNLT-G 298
G + +GSL++ L++ F ++I D+ L ++ +GL L+SL+L SC I D+G+ +
Sbjct: 270 GTMHLA-MGSLRLSGLDVSFCDKIGDQTLAYIAQGLYQLKSLSLCSCHISDDGINRMVRQ 328
Query: 299 LCNLKCLELSD-TQVGSSGLRHLS-GLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNL 355
+ L+ L + ++ GL ++ LT L I+L T I+ L ++ L LK LNL
Sbjct: 329 MHELRTLNIGQCVRITDKGLELIADHLTQLVGIDLYGCTKITKRGLERITQLPCLKVLNL 388
Query: 356 DARQITDT 363
Q+T++
Sbjct: 389 GLWQMTES 396
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 103/312 (33%), Positives = 162/312 (51%), Gaps = 32/312 (10%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + G ++ + L
Sbjct: 68 RGIRRVQILSLRRSLSYVIQGMP------NIESLNLSGCYNLTDNGLGHAFVQEIPSLRV 121
Query: 160 LNIKWCNCITDSDMKPLSG-LTNLKSLQI-SCSKVTDSGIAYLK-GLQKLTLLNLEGCPV 216
LN+ C ITDS + ++ L NL+ L++ CS +T++G+ + GL +L LNL C
Sbjct: 122 LNLSLCKQITDSSLGRIAQYLKNLEMLELGGCSNITNTGLLLVAWGLHRLKSLNLRSCRH 181
Query: 217 TA-------ACLDSLSALG--SLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-NEI 264
+ A + +A G +L YL L CQ L+D + SK + L+VLNL F I
Sbjct: 182 VSDVGIGHLAGMTRSAAEGCLNLEYLTLQDCQKLTDLSLKHISKGLTKLRVLNLSFCGGI 241
Query: 265 TDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLS 321
+D ++HL + +L SLNL SC I D G ++L G L L++S ++G L +++
Sbjct: 242 SDAGMIHLSHMGSLWSLNLRSCDNISDTGTMHLAMGSLRLSGLDVSFCDKIGDQTLAYIA 301
Query: 322 -GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALT-SLTGLTHL 377
GL L+S++L ISD + R + + L++LN+ +ITD GL + LT L +
Sbjct: 302 QGLYQLKSLSLCSCHISDDGINRMVRQMHELRTLNIGQCVRITDKGLELIADHLTQLVGI 361
Query: 378 DLFG-ARITDSG 388
DL+G +IT G
Sbjct: 362 DLYGCTKITKRG 373
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 112/214 (52%), Gaps = 16/214 (7%)
Query: 69 VTDSGLIHL--------KDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAI 119
V+D G+ HL + C NL+ L C +++D L+H+ +GL+ L L+ I
Sbjct: 182 VSDVGIGHLAGMTRSAAEGCLNLEYLTLQDCQKLTDLSLKHISKGLTKLRVLNLSFCGGI 241
Query: 120 TAQGMKAFAGLINLVKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
+ GM + + +L L+L C I G + G ++L L++ +C+ I D + ++
Sbjct: 242 SDAGMIHLSHMGSLWSLNLRSCDNISDTGTMHLAMGSLRLSGLDVSFCDKIGDQTLAYIA 301
Query: 178 -GLTNLKSLQISCSKVTDSGI-AYLKGLQKLTLLNLEGC-PVTAACLDSLS-ALGSLFYL 233
GL LKSL + ++D GI ++ + +L LN+ C +T L+ ++ L L +
Sbjct: 302 QGLYQLKSLSLCSCHISDDGINRMVRQMHELRTLNIGQCVRITDKGLELIADHLTQLVGI 361
Query: 234 NLNRC-QLSDDGCEKFSKIGSLKVLNLGFNEITD 266
+L C +++ G E+ +++ LKVLNLG ++T+
Sbjct: 362 DLYGCTKITKRGLERITQLPCLKVLNLGLWQMTE 395
>gi|290977411|ref|XP_002671431.1| leucine rich repeat protein [Naegleria gruberi]
gi|284085000|gb|EFC38687.1| leucine rich repeat protein [Naegleria gruberi]
Length = 389
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 82/296 (27%), Positives = 143/296 (48%), Gaps = 7/296 (2%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
LK L+S+D +C G + + + LTSL NN + QG+K L NL +L
Sbjct: 93 LKSYDQLRSVDIGYCY---IGNSQTISEMKQLTSLDID-NNCVDEQGVKLIGELHNLTRL 148
Query: 137 DLERCTRIH-GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS 195
++ C RI G ++ G+ ++ LN+ + K +S L +L IS +++ +
Sbjct: 149 NI-GCNRIGLEGFKSISGMKQMRDLNVSSSGAGVEG-AKLMSQLKHLTKFNISGNEIGEE 206
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G + L+ LT+L++ + A S+S L L L ++ + +G + S++ L
Sbjct: 207 GAKSIGELKWLTMLDICSNQIGAEGAKSISQLERLTKLYISGNGIGPEGAQSISQLSHLT 266
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 315
L +G N+I + + L L L +DS IG EG +++ L NLK L +SD Q+G
Sbjct: 267 TLFIGGNQIGSKGSKSISQLKRLTILYIDSNEIGSEGANSISQLSNLKELYISDNQIGDE 326
Query: 316 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 371
G + +S L +L ++ + I D + ++ L L L++ +I D G L +
Sbjct: 327 GAKSISQLKHLTTLEILRNEIGDQGAKSISQLKQLTRLHISCNRIGDQGAKLLNRM 382
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 76/287 (26%), Positives = 131/287 (45%), Gaps = 29/287 (10%)
Query: 130 LINLVKLDLERC----TRIHGGLVNLKGLMKLESLNIKWC-------------------- 165
L N+ K+ L C I G + LK +L S++I +C
Sbjct: 68 LHNISKIKLRACDDYLESIKGLMEILKSYDQLRSVDIGYCYIGNSQTISEMKQLTSLDID 127
Query: 166 -NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE--GCPVTAACLD 222
NC+ + +K + L NL L I C+++ G + G++++ LN+ G V A L
Sbjct: 128 NNCVDEQGVKLIGELHNLTRLNIGCNRIGLEGFKSISGMKQMRDLNVSSSGAGVEGAKL- 186
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282
+S L L N++ ++ ++G + ++ L +L++ N+I E + L L L
Sbjct: 187 -MSQLKHLTKFNISGNEIGEEGAKSIGELKWLTMLDICSNQIGAEGAKSISQLERLTKLY 245
Query: 283 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 342
+ GIG EG +++ L +L L + Q+GS G + +S L L + + I
Sbjct: 246 ISGNGIGPEGAQSISQLSHLTTLFIGGNQIGSKGSKSISQLKRLTILYIDSNEIGSEGAN 305
Query: 343 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 389
++ LS+LK L + QI D G +++ L LT L++ I D GA
Sbjct: 306 SISQLSNLKELYISDNQIGDEGAKSISQLKHLTTLEILRNEIGDQGA 352
>gi|254416357|ref|ZP_05030110.1| Leucine Rich Repeat domain protein [Coleofasciculus chthonoplastes
PCC 7420]
gi|196176795|gb|EDX71806.1| Leucine Rich Repeat domain protein [Coleofasciculus chthonoplastes
PCC 7420]
Length = 438
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 104/314 (33%), Positives = 154/314 (49%), Gaps = 46/314 (14%)
Query: 99 LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158
+ L G SNLT L + +N+IT + AGL NL L LE + ++ L +L
Sbjct: 66 ISPLAGFSNLTKL-YLESNSIT--DISPLAGLSNLTVLSLE-----SNSITDVSPLAELS 117
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
+L + N + +D+ PL+GL+NL L ++ + +TD I L GL LT+L L+ +T
Sbjct: 118 NLTKLYLNNNSITDVSPLAGLSNLTKLYLNNNSITD--IGPLAGLSNLTVLYLDSNSITD 175
Query: 219 ACLDSLSALGSLFYLNLNRCQLSD--------------------DGCEKFSKIGSLKVLN 258
+ L+ L +L LNL ++D +++ +L VL
Sbjct: 176 --VSPLAGLSNLTVLNLGNNSITDVNPLAELSNLTKVFLTNNSITNISPLAELSNLTVLY 233
Query: 259 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ---VGSS 315
L N ITD + L GL+NL LNLD+ I D + L GL NL L L + +G +
Sbjct: 234 LYSNSITD--ISPLAGLSNLTVLNLDNNSITD--ISPLAGLSNLTELSLGNADFFIIGEN 289
Query: 316 G---LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 372
+ L+GL+NL +NL I+D S LA LS+L L+L + ITD ++ L L+
Sbjct: 290 SITDISPLAGLSNLTVLNLGRNSITDVS--PLAELSNLTKLSLGSNSITD--ISPLAGLS 345
Query: 373 GLTHLDLFGARITD 386
LT L L ITD
Sbjct: 346 NLTKLYLDSNSITD 359
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 85/237 (35%), Positives = 115/237 (48%), Gaps = 32/237 (13%)
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
W N ITD + PL+G +NL L + + +TD I+ L GL LT+L+LE +T +
Sbjct: 59 WDNSITD--ISPLAGFSNLTKLYLESNSITD--ISPLAGLSNLTVLSLESNSITD--VSP 112
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
L+ L +L L LN ++D + + +L L L N ITD + L GL+NL L L
Sbjct: 113 LAELSNLTKLYLNNNSITD--VSPLAGLSNLTKLYLNNNSITD--IGPLAGLSNLTVLYL 168
Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGS-SGLRHLSGLTNLESINLSFTGISD---- 338
DS I D + L GL NL L L + + + L LS LT + N S T IS
Sbjct: 169 DSNSITD--VSPLAGLSNLTVLNLGNNSITDVNPLAELSNLTKVFLTNNSITNISPLAEL 226
Query: 339 -------------GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 382
+ LAGLS+L LNLD ITD ++ L L+ LT L L A
Sbjct: 227 SNLTVLYLYSNSITDISPLAGLSNLTVLNLDNNSITD--ISPLAGLSNLTELSLGNA 281
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 107/323 (33%), Positives = 148/323 (45%), Gaps = 69/323 (21%)
Query: 99 LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158
+ L GLSNLT LS N +IT + A L NL KL L + + ++ L L
Sbjct: 88 ISPLAGLSNLTVLSLESN-SIT--DVSPLAELSNLTKLYLN-----NNSITDVSPLAGLS 139
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT- 217
+L + N + +D+ PL+GL+NL L + + +TD ++ L GL LT+LNL +T
Sbjct: 140 NLTKLYLNNNSITDIGPLAGLSNLTVLYLDSNSITD--VSPLAGLSNLTVLNLGNNSITD 197
Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 277
L LS L +F N + +S +++ +L VL L N ITD + L GL+N
Sbjct: 198 VNPLAELSNLTKVFLTNNSITNIS-----PLAELSNLTVLYLYSNSITD--ISPLAGLSN 250
Query: 278 LESLNLDSCGIGD----EGLVNLT------------------------GLCNLKCLEL-- 307
L LNLD+ I D GL NLT GL NL L L
Sbjct: 251 LTVLNLDNNSITDISPLAGLSNLTELSLGNADFFIIGENSITDISPLAGLSNLTVLNLGR 310
Query: 308 -SDTQVGS-----------------SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 349
S T V + + L+GL+NL + L I+D S LAGLS+
Sbjct: 311 NSITDVSPLAELSNLTKLSLGSNSITDISPLAGLSNLTKLYLDSNSITDVS--PLAGLSN 368
Query: 350 LKSLNLDARQITD-TGLAALTSL 371
L L L + ITD + LA LT+L
Sbjct: 369 LTELFLSSNSITDASPLAQLTNL 391
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 98/292 (33%), Positives = 143/292 (48%), Gaps = 34/292 (11%)
Query: 45 NDKWMDVIASQG-SSLLSVDLSGSDVTDSGLIHLKDCSNLQ--SLDFNFCIQISDGGLEH 101
N+ DV G S+L + L+ + +TD G L SNL LD N +S
Sbjct: 126 NNSITDVSPLAGLSNLTKLYLNNNSITDIG--PLAGLSNLTVLYLDSNSITDVS-----P 178
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
L GLSNLT L+ NN+IT + A L NL K+ L + + N+ L +L +L
Sbjct: 179 LAGLSNLTVLNLG-NNSIT--DVNPLAELSNLTKVFLT-----NNSITNISPLAELSNLT 230
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV----- 216
+ + + +D+ PL+GL+NL L + + +TD I+ L GL LT L+L
Sbjct: 231 VLYLYSNSITDISPLAGLSNLTVLNLDNNSITD--ISPLAGLSNLTELSLGNADFFIIGE 288
Query: 217 -TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 275
+ + L+ L +L LNL R ++D +++ +L L+LG N ITD + L GL
Sbjct: 289 NSITDISPLAGLSNLTVLNLGRNSITD--VSPLAELSNLTKLSLGSNSITD--ISPLAGL 344
Query: 276 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 327
+NL L LDS I D + L GL NL L LS + + L+ LTNL
Sbjct: 345 SNLTKLYLDSNSITD--VSPLAGLSNLTELFLSSNSITDAS--PLAQLTNLR 392
>gi|51850103|dbj|BAD42392.1| leucine-rich repeat protein [Ralstonia solanacearum]
Length = 621
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 112/376 (29%), Positives = 167/376 (44%), Gaps = 29/376 (7%)
Query: 43 GVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
G+ D+ +A+ S+ S+DLS + + G L D L SL+ + +I D G L
Sbjct: 224 GIGDRAAQALAAS-RSIRSLDLSVNMIGCDGAQALADAP-LVSLNL-YSNEIGDDGARAL 280
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
LTSL RRN I G AFA L KL+L G L G L L++
Sbjct: 281 ATSQTLTSLELRRN-GIGNAGAGAFANNTVLRKLNLANNMIDKRGARVLAGNTSLTELDL 339
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGI------AYLKGLQ------------ 204
N + D + L+G +L SL++ ++++D G+ A L+ L
Sbjct: 340 G-GNRLGDKGARALAGNRSLLSLKVDHNEISDEGVQALAQHATLRSLDLSFNFVGLQGAG 398
Query: 205 ------KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 258
+L+ LNL C + + +L+ SL L LN ++ DDG +K +L +L+
Sbjct: 399 ALGGNTRLSELNLSLCGINSYSASALARNKSLASLYLNGNRIGDDGARALAKNSTLTLLD 458
Query: 259 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 318
L N I + L G L SL L GI D+G L L L+LS ++GS G R
Sbjct: 459 LSRNNIQNAGAEALGGNQALISLKLAGNGIDDDGAAALARHPRLTTLDLSQNRIGSEGAR 518
Query: 319 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 378
HL+ L ++LS I + L+ + L +L + I + G AL T LT LD
Sbjct: 519 HLAQSATLAELDLSENRIGPEGAKALSLSTVLTTLKVIDNAIGEDGARALADSTSLTSLD 578
Query: 379 LFGARITDSGAAYLRS 394
I ++GA L +
Sbjct: 579 ARRNGIGEAGAQVLEA 594
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 86/289 (29%), Positives = 129/289 (44%), Gaps = 29/289 (10%)
Query: 92 IQISDGGLEHLRGLSNLTSL-SFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN 150
+ ISD + R LS +L S R A+T + +KA L L++ RCT G ++
Sbjct: 127 LTISDPAM--FRQLSLYPALKSVRFKGALTLEALKALP--PTLEHLEIGRCT---GSAIS 179
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
+GL L ++ LKSL ++ ++ G L + L L+
Sbjct: 180 AEGLAHLAAMP--------------------LKSLNLNGIEIGVEGARTLATSKSLVSLS 219
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
L GC + +L+A S+ L+L+ + DG + + L LNL NEI D+
Sbjct: 220 LIGCGIGDRAAQALAASRSIRSLDLSVNMIGCDGAQALAD-APLVSLNLYSNEIGDDGAR 278
Query: 271 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 330
L L SL L GIG+ G L+ L L++ + G R L+G T+L ++
Sbjct: 279 ALATSQTLTSLELRRNGIGNAGAGAFANNTVLRKLNLANNMIDKRGARVLAGNTSLTELD 338
Query: 331 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
L + D R LAG SL SL +D +I+D G+ AL L LDL
Sbjct: 339 LGGNRLGDKGARALAGNRSLLSLKVDHNEISDEGVQALAQHATLRSLDL 387
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 84/201 (41%), Gaps = 26/201 (12%)
Query: 218 AACLDSLSALG-SLFYLNLNRCQLSDDGCEKFSKIGS--LKVLNLGFNEITDECLVHLKG 274
A L++L AL +L +L + RC S E + + + LK LNL EI E L
Sbjct: 152 ALTLEALKALPPTLEHLEIGRCTGSAISAEGLAHLAAMPLKSLNLNGIEIGVEGARTLAT 211
Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS-----------------------DTQ 311
+L SL+L CGIGD L +++ L+LS +
Sbjct: 212 SKSLVSLSLIGCGIGDRAAQALAASRSIRSLDLSVNMIGCDGAQALADAPLVSLNLYSNE 271
Query: 312 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 371
+G G R L+ L S+ L GI + A + L+ LNL I G L
Sbjct: 272 IGDDGARALATSQTLTSLELRRNGIGNAGAGAFANNTVLRKLNLANNMIDKRGARVLAGN 331
Query: 372 TGLTHLDLFGARITDSGAAYL 392
T LT LDL G R+ D GA L
Sbjct: 332 TSLTELDLGGNRLGDKGARAL 352
>gi|283777859|ref|YP_003368614.1| serine/threonine protein kinase [Pirellula staleyi DSM 6068]
gi|283436312|gb|ADB14754.1| serine/threonine protein kinase [Pirellula staleyi DSM 6068]
Length = 1487
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 111/377 (29%), Positives = 179/377 (47%), Gaps = 50/377 (13%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNL-------T 109
S L +DLS + +TD GL L S L+ L + +SD GLE L +L T
Sbjct: 743 SQLAELDLSSTKITDQGLTRLLALSKLERLYLSDN-SLSDNGLEQLAMAKSLRLLVASGT 801
Query: 110 SLSFRRNNAITAQGMKAF-----AGLINLVKLDL-ERCTR-----IHGGLVNLK------ 152
LS R + +TA + A + V L L ER R + G +V +
Sbjct: 802 MLSERGHGVLTAALPQTEITWDGADMQRQVALVLLERGARLSVADMRGNIVPVVARREDL 861
Query: 153 --GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
G +K+ ++ C I D D+KPL L +L+SL +S +K+T +G+A L GL L ++
Sbjct: 862 PIGRLKVLKVDFAGCRTIGDDDLKPLVALADLESLALSGTKITPAGLANLHGLASLKSID 921
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN-------- 262
L P+T A +++L+A L C++ + E K+ + VL++G
Sbjct: 922 LGTLPLTTASVETLAA-------ALPDCKI--ERREPADKLVARWVLSVGGKCTITSDES 972
Query: 263 ----EITDECLVHLKGLTNLESLNLDSCGIG-DEGLVNLTGLCNLKCLELSDTQVGSSGL 317
E+T V + ++E +NL C IG D L ++ L NLK L L + + + L
Sbjct: 973 ASQVELTSATTVLPEAAIHVEKINLTDCKIGPDAPLASIAELANLKSLLLVGSDITDAQL 1032
Query: 318 RHLSGLTNLESINLSFTGISDGSLRK-LAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 376
++GL +L ++LS T ++ ++ LA L L+ L L ++ L A+T+L L+H
Sbjct: 1033 TSIAGLKSLSELSLSDTAVTAPAVNGLLAQLPQLQRLYLSGTKVDRGVLVAVTNLPKLSH 1092
Query: 377 LDLFGARITDSGAAYLR 393
L L G + S + L+
Sbjct: 1093 LSLAGIEVAPSDLSLLK 1109
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 99/352 (28%), Positives = 164/352 (46%), Gaps = 33/352 (9%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
L+G +V S L LK C L+ LD + +SD + L GLS+L L+ +N A
Sbjct: 1095 LAGIEVAPSDLSLLKKCPQLEWLDLS-STGLSDEASQQLVGLSSLRELAVPKNPLTDAGQ 1153
Query: 124 MKAFAGLIN-------------LVKLDLERCTRIH---GGLVNLKGLMK----------L 157
+ A + N + LE+ + G + + K L +
Sbjct: 1154 EELIAAMPNCHVVGDPLDPQRLAARWILEKRGTVELDTGAVTSPKELPRDKCHVLAIDLA 1213
Query: 158 ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
E N+K I + ++G + L+SL++S + +TD+ +A + L+ L L L +T
Sbjct: 1214 ELANLKAAEVI-----QVIAGCSELESLRLSDTAITDADLAAIGKLKLLKKLYLANLAIT 1268
Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 277
L L+ L L L+++ +++ G F SL+ LNL +TD L + +T+
Sbjct: 1269 DDGLAKLAELELLEVLDVSGGRITGAGLANFRSASSLQELNLSNTMLTDPNLAAIAPMTS 1328
Query: 278 LESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 336
L SL++ +C G+ D GL L GL L+ L L T++ + L+ LE ++L T I
Sbjct: 1329 LISLDMSACRGVSDAGLKKLAGLTQLRSLGLRGTKLTDAAAESLASYAKLEQLDLDSTSI 1388
Query: 337 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 388
D + KL L+SL+ L L +TD G+A+L L L + L +T++
Sbjct: 1389 GDSGVEKLLSLTSLRRLVLAKTSVTDGGVASLAKLKDLRSVSLVRTSVTEAA 1440
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 78/253 (30%), Positives = 117/253 (46%), Gaps = 7/253 (2%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
+L++D G VTDS L L+ L+ L I+D G+ L L +L LS R A
Sbjct: 673 ILAIDFEGRGVTDSDLASLELAPGLRQLSL-AATPITDTGIASLAKLKSLAKLSLART-A 730
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
IT +G+++ A L L +LDL GL L L KLE L + N ++D+ ++ L+
Sbjct: 731 ITNKGLESLARLSQLAELDLSSTKITDQGLTRLLALSKLERLYLS-DNSLSDNGLEQLAM 789
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
+L+ L S + +++ G L T + +G + L G+ + R
Sbjct: 790 AKSLRLLVASGTMLSERGHGVLTAALPQTEITWDGADMQRQVALVLLERGARLSVADMRG 849
Query: 239 QLSDDGCEKFS-KIGSLKVLNLGF---NEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
+ + IG LKVL + F I D+ L L L +LESL L I GL
Sbjct: 850 NIVPVVARREDLPIGRLKVLKVDFAGCRTIGDDDLKPLVALADLESLALSGTKITPAGLA 909
Query: 295 NLTGLCNLKCLEL 307
NL GL +LK ++L
Sbjct: 910 NLHGLASLKSIDL 922
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 65/240 (27%), Positives = 102/240 (42%), Gaps = 28/240 (11%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
+TDSD+ L L+ L ++ + +TD+GIA L L+ L L+L +T L+SL+ L
Sbjct: 683 VTDSDLASLELAPGLRQLSLAATPITDTGIASLAKLKSLAKLSLARTAITNKGLESLARL 742
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
L L+L+ +++D G + + L+ L L N ++D L L +L L
Sbjct: 743 SQLAELDLSSTKITDQGLTRLLALSKLERLYLSDNSLSDNGLEQLAMAKSLRLLVASGTM 802
Query: 288 IGDEG-------------------------LVNLTGLCNLKCLELSDTQVGSSGLRHLSG 322
+ + G LV L L ++ V R
Sbjct: 803 LSERGHGVLTAALPQTEITWDGADMQRQVALVLLERGARLSVADMRGNIVPVVARREDLP 862
Query: 323 LTNLESINLSFTG---ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
+ L+ + + F G I D L+ L L+ L+SL L +IT GLA L L L +DL
Sbjct: 863 IGRLKVLKVDFAGCRTIGDDDLKPLVALADLESLALSGTKITPAGLANLHGLASLKSIDL 922
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 100/399 (25%), Positives = 156/399 (39%), Gaps = 90/399 (22%)
Query: 70 TDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF-A 128
D+ L + + +NL+SL I+D L + GL +L+ LS + A+TA + A
Sbjct: 1004 PDAPLASIAELANLKSL-LLVGSDITDAQLTSIAGLKSLSELSLS-DTAVTAPAVNGLLA 1061
Query: 129 GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
L L +L L G LV + L KL L++ + SD+ L L+ L +S
Sbjct: 1062 QLPQLQRLYLSGTKVDRGVLVAVTNLPKLSHLSLAGIE-VAPSDLSLLKKCPQLEWLDLS 1120
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK- 247
+ ++D L GL L L + P+T A + L A + C + D +
Sbjct: 1121 STGLSDEASQQLVGLSSLRELAVPKNPLTDAGQEELIA-------AMPNCHVVGDPLDPQ 1173
Query: 248 -------FSKIGSLK------------------VLNLGFNEITD----ECLVHLKGLTNL 278
K G+++ VL + E+ + E + + G + L
Sbjct: 1174 RLAARWILEKRGTVELDTGAVTSPKELPRDKCHVLAIDLAELANLKAAEVIQVIAGCSEL 1233
Query: 279 ESLNLDSCGIGD------------------------------------------------ 290
ESL L I D
Sbjct: 1234 ESLRLSDTAITDADLAAIGKLKLLKKLYLANLAITDDGLAKLAELELLEVLDVSGGRITG 1293
Query: 291 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSS 349
GL N +L+ L LS+T + L ++ +T+L S+++S G+SD L+KLAGL+
Sbjct: 1294 AGLANFRSASSLQELNLSNTMLTDPNLAAIAPMTSLISLDMSACRGVSDAGLKKLAGLTQ 1353
Query: 350 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 388
L+SL L ++TD +L S L LDL I DSG
Sbjct: 1354 LRSLGLRGTKLTDAAAESLASYAKLEQLDLDSTSIGDSG 1392
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 66/130 (50%)
Query: 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 268
++ EG VT + L SL L L+L ++D G +K+ SL L+L IT++
Sbjct: 676 IDFEGRGVTDSDLASLELAPGLRQLSLAATPITDTGIASLAKLKSLAKLSLARTAITNKG 735
Query: 269 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 328
L L L+ L L+L S I D+GL L L L+ L LSD + +GL L+ +L
Sbjct: 736 LESLARLSQLAELDLSSTKITDQGLTRLLALSKLERLYLSDNSLSDNGLEQLAMAKSLRL 795
Query: 329 INLSFTGISD 338
+ S T +S+
Sbjct: 796 LVASGTMLSE 805
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 71/142 (50%), Gaps = 2/142 (1%)
Query: 253 SLKVLNLGFNE--ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 310
SL++L + F +TD L L+ L L+L + I D G+ +L L +L L L+ T
Sbjct: 670 SLEILAIDFEGRGVTDSDLASLELAPGLRQLSLAATPITDTGIASLAKLKSLAKLSLART 729
Query: 311 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 370
+ + GL L+ L+ L ++LS T I+D L +L LS L+ L L ++D GL L
Sbjct: 730 AITNKGLESLARLSQLAELDLSSTKITDQGLTRLLALSKLERLYLSDNSLSDNGLEQLAM 789
Query: 371 LTGLTHLDLFGARITDSGAAYL 392
L L G +++ G L
Sbjct: 790 AKSLRLLVASGTMLSERGHGVL 811
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 64/129 (49%)
Query: 254 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 313
L+ L+L ITD + L L +L L+L I ++GL +L L L L+LS T++
Sbjct: 697 LRQLSLAATPITDTGIASLAKLKSLAKLSLARTAITNKGLESLARLSQLAELDLSSTKIT 756
Query: 314 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 373
GL L L+ LE + LS +SD L +LA SL+ L +++ G LT+
Sbjct: 757 DQGLTRLLALSKLERLYLSDNSLSDNGLEQLAMAKSLRLLVASGTMLSERGHGVLTAALP 816
Query: 374 LTHLDLFGA 382
T + GA
Sbjct: 817 QTEITWDGA 825
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 78/159 (49%), Gaps = 3/159 (1%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH-GGLVNL 151
+I+ GL + R S+L L+ N +T + A A + +L+ LD+ C + GL L
Sbjct: 1290 RITGAGLANFRSASSLQELNLS-NTMLTDPNLAAIAPMTSLISLDMSACRGVSDAGLKKL 1348
Query: 152 KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
GL +L SL ++ +TD+ + L+ L+ L + + + DSG+ L L L L L
Sbjct: 1349 AGLTQLRSLGLRGTK-LTDAAAESLASYAKLEQLDLDSTSIGDSGVEKLLSLTSLRRLVL 1407
Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 250
VT + SL+ L L ++L R +++ C + K
Sbjct: 1408 AKTSVTDGGVASLAKLKDLRSVSLVRTSVTEAACTELEK 1446
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 78/155 (50%)
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
IT G+ F +L +L+L L + + L SL++ C ++D+ +K L+G
Sbjct: 1291 ITGAGLANFRSASSLQELNLSNTMLTDPNLAAIAPMTSLISLDMSACRGVSDAGLKKLAG 1350
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
LT L+SL + +K+TD+ L KL L+L+ + + ++ L +L SL L L +
Sbjct: 1351 LTQLRSLGLRGTKLTDAAAESLASYAKLEQLDLDSTSIGDSGVEKLLSLTSLRRLVLAKT 1410
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
++D G +K+ L+ ++L +T+ L+
Sbjct: 1411 SVTDGGVASLAKLKDLRSVSLVRTSVTEAACTELE 1445
>gi|328950290|ref|YP_004367625.1| hypothetical protein Marky_0765 [Marinithermus hydrothermalis DSM
14884]
gi|328450614|gb|AEB11515.1| hypothetical protein Marky_0765 [Marinithermus hydrothermalis DSM
14884]
Length = 462
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 109/335 (32%), Positives = 155/335 (46%), Gaps = 55/335 (16%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
+L+++DL G+ + D L L + L+ LD +I+D L L+NLT L
Sbjct: 81 EHAVNLVTLDLKGNRIAD--LTPLAELRYLEELDL-VSNRITD-----LAPLANLTRLKR 132
Query: 114 RR--NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDS 171
NN + Q ++ AGL L +L + R+ L L L +L L + W N +TD
Sbjct: 133 LHLGNNQV--QSLEPLAGLTQLTELRIGN-NRV-ADLAPLADLGRLAVL-VAWRNAVTD- 186
Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
++PL+ LT ++ L ++ ++VTD L L+ L L
Sbjct: 187 -LQPLANLTRMRVLSLASNRVTD--------------------------LTPLAELAQLD 219
Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
L L+ Q++D + + LKVL+L FN IT L L L L L LD+ I D
Sbjct: 220 TLFLSENQIAD--LAPLAGLTQLKVLSLDFNRITH--LDPLARLVELTELGLDANQIAD- 274
Query: 292 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 351
L L GL NL+ L S+ ++ L L GL LE + L+F I D S L GL +LK
Sbjct: 275 -LTPLAGLTNLQVLSASENRIAD--LTPLGGLVRLEQLGLNFNRIRDIS--ALEGLKALK 329
Query: 352 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
L L+ QI + LA L LT L L L RI D
Sbjct: 330 VLELEGNQIVN--LAPLAGLTELRVLVLGQNRIAD 362
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 70/228 (30%), Positives = 99/228 (43%), Gaps = 44/228 (19%)
Query: 124 MKAFAGLINL--VKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
+ AGL L + LD R T + L L++L L + N I +D+ PL+GLTN
Sbjct: 231 LAPLAGLTQLKVLSLDFNRITHLDP----LARLVELTELGLD-ANQI--ADLTPLAGLTN 283
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
L+ L S +++ D + L GL +L L LN NR +
Sbjct: 284 LQVLSASENRIAD--LTPLGGLVRLEQLG----------------------LNFNRIR-- 317
Query: 242 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN 301
+ +LKVL L N+I + L L GLT L L L I D L L L N
Sbjct: 318 --DISALEGLKALKVLELEGNQIVN--LAPLAGLTELRVLVLGQNRIAD--LTPLGALVN 371
Query: 302 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD-GSLRKLAGLS 348
L LE+S ++ G L+ L NL ++L +++ G L AGL
Sbjct: 372 LVQLEVSRNEITDLG--ALAQLENLVRVSLVRNRVTNLGPLVANAGLQ 417
>gi|430741732|ref|YP_007200861.1| hypothetical protein Sinac_0756 [Singulisphaera acidiphila DSM
18658]
gi|430013452|gb|AGA25166.1| hypothetical protein Sinac_0756 [Singulisphaera acidiphila DSM
18658]
Length = 304
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 67/183 (36%), Positives = 99/183 (54%), Gaps = 6/183 (3%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TD+GL L L+ + + F ++++ GL HL+G ++L SL R IT +G+ A
Sbjct: 113 MTDTGLAQLGGLPRLRQV-YCFKPKVTNAGLAHLKGATHLVSLELLRVPEITDEGLVHLA 171
Query: 129 GLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
GL NL KL+L RI G GL +L L +L +L + TD+ + L TNLK L +
Sbjct: 172 GLTNLEKLNLS-GARIAGPGLPHLARLGRLRTLVL---GSTTDAGLAQLGRFTNLKQLYL 227
Query: 188 SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 247
K TD+G+A L L+ LT L LE +T A L ++ L +L L+L +S EK
Sbjct: 228 GTGKYTDAGLAELSKLRSLTELGLEAGDLTEAVLIHVAGLPNLERLDLGGAPVSQAAIEK 287
Query: 248 FSK 250
F +
Sbjct: 288 FKR 290
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 74/220 (33%), Positives = 97/220 (44%), Gaps = 25/220 (11%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
I+D L L+ L + +TD+G+A L GL +L + VT A L L
Sbjct: 89 ISDEAFTALGMFDQLQELTMVVGVMTDTGLAQLGGLPRLRQVYCFKPKVTNAGLAHLKGA 148
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
L L L R EITDE LVHL GLTNLE LNL
Sbjct: 149 THLVSLELLRVP-----------------------EITDEGLVHLAGLTNLEKLNLSGAR 185
Query: 288 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 347
I GL +L L L+ L L T +GL L TNL+ + L +D L +L+ L
Sbjct: 186 IAGPGLPHLARLGRLRTLVLGSTT--DAGLAQLGRFTNLKQLYLGTGKYTDAGLAELSKL 243
Query: 348 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 387
SL L L+A +T+ L + L L LDL GA ++ +
Sbjct: 244 RSLTELGLEAGDLTEAVLIHVAGLPNLERLDLGGAPVSQA 283
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 92/181 (50%), Gaps = 3/181 (1%)
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDS 223
+TD+ + L GL L+ + KVT++G+A+LKG L L L P +T L
Sbjct: 110 VGVMTDTGLAQLGGLPRLRQVYCFKPKVTNAGLAHLKGATHLVSLELLRVPEITDEGLVH 169
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
L+ L +L LNL+ +++ G +++G L+ L LG TD L L TNL+ L L
Sbjct: 170 LAGLTNLEKLNLSGARIAGPGLPHLARLGRLRTLVLG--STTDAGLAQLGRFTNLKQLYL 227
Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
+ D GL L+ L +L L L + + L H++GL NLE ++L +S ++ K
Sbjct: 228 GTGKYTDAGLAELSKLRSLTELGLEAGDLTEAVLIHVAGLPNLERLDLGGAPVSQAAIEK 287
Query: 344 L 344
Sbjct: 288 F 288
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 90/179 (50%), Gaps = 3/179 (1%)
Query: 210 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
L P++ +L L L + ++D G + + L+ + ++T+ L
Sbjct: 83 TLPQVPISDEAFTALGMFDQLQELTMVVGVMTDTGLAQLGGLPRLRQVYCFKPKVTNAGL 142
Query: 270 VHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 328
HLKG T+L SL L I DEGLV+L GL NL+ L LS ++ GL HL+ L L +
Sbjct: 143 AHLKGATHLVSLELLRVPEITDEGLVHLAGLTNLEKLNLSGARIAGPGLPHLARLGRLRT 202
Query: 329 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 387
+ L T +D L +L ++LK L L + TD GLA L+ L LT L L +T++
Sbjct: 203 LVLGST--TDAGLAQLGRFTNLKQLYLGTGKYTDAGLAELSKLRSLTELGLEAGDLTEA 259
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 80/166 (48%), Gaps = 3/166 (1%)
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
GS+ L + +SD+ L+ L + +TD L L GL L +
Sbjct: 77 GSINPATLPQVPISDEAFTALGMFDQLQELTMVVGVMTDTGLAQLGGLPRLRQVYCFKPK 136
Query: 288 IGDEGLVNLTGLCNLKCLE-LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG 346
+ + GL +L G +L LE L ++ GL HL+GLTNLE +NLS I+ L LA
Sbjct: 137 VTNAGLAHLKGATHLVSLELLRVPEITDEGLVHLAGLTNLEKLNLSGARIAGPGLPHLAR 196
Query: 347 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
L L++L L + TD GLA L T L L L + TD+G A L
Sbjct: 197 LGRLRTLVLGS--TTDAGLAQLGRFTNLKQLYLGTGKYTDAGLAEL 240
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 100/235 (42%), Gaps = 32/235 (13%)
Query: 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS-FR 114
G S+ L ++D L LQ L + ++D GL L GL L + F+
Sbjct: 76 GGSINPATLPQVPISDEAFTALGMFDQLQELTMVVGV-MTDTGLAQLGGLPRLRQVYCFK 134
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDM 173
+T G+ G +LV L+L R I GLV+L GL LE LN+ I +
Sbjct: 135 PK--VTNAGLAHLKGATHLVSLELLRVPEITDEGLVHLAGLTNLEKLNLSGAR-IAGPGL 191
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
L+ L L++L + + TD+G+A L +L L
Sbjct: 192 PHLARLGRLRTLVLGST--TDAGLA------------------------QLGRFTNLKQL 225
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 288
L + +D G + SK+ SL L L ++T+ L+H+ GL NLE L+L +
Sbjct: 226 YLGTGKYTDAGLAELSKLRSLTELGLEAGDLTEAVLIHVAGLPNLERLDLGGAPV 280
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 64/135 (47%), Gaps = 5/135 (3%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
++TD GL+HL +NL+ L+ + +I+ GL HL L L +L + T G+
Sbjct: 160 PEITDEGLVHLAGLTNLEKLNLSGA-RIAGPGLPHLARLGRLRTLVL---GSTTDAGLAQ 215
Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
NL +L L GL L L L L ++ +T++ + ++GL NL+ L
Sbjct: 216 LGRFTNLKQLYLGTGKYTDAGLAELSKLRSLTELGLE-AGDLTEAVLIHVAGLPNLERLD 274
Query: 187 ISCSKVTDSGIAYLK 201
+ + V+ + I K
Sbjct: 275 LGGAPVSQAAIEKFK 289
>gi|195150157|ref|XP_002016021.1| GL10712 [Drosophila persimilis]
gi|194109868|gb|EDW31911.1| GL10712 [Drosophila persimilis]
Length = 529
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 123/374 (32%), Positives = 189/374 (50%), Gaps = 68/374 (18%)
Query: 7 SQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG 66
S +FN LV R + +V + + R AL+DL LG +L S++LSG
Sbjct: 193 SPSLFNCLV-RRGIKKVQILSLRR-ALKDLVLGV----------------PALTSLNLSG 234
Query: 67 S-DVTDSGLIHL--KDCSNLQSLDFNFCIQISDGGL----EHLRGLSNLTSLSFRRNNAI 119
+V D L H D NL++LD + C QI+D L +HLR NL +L I
Sbjct: 235 CFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLR---NLENLELGGCCNI 291
Query: 120 TAQGMKAFA-GLINLVKLDLERCTRIH-GGLVNLKGL--------MKLESLNIKWCNCIT 169
T G+ A GL L L+L C I G+ +L G ++LE L ++ C ++
Sbjct: 292 TNTGLLLIAWGLKKLRHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEHLGLQDCQRLS 351
Query: 170 DSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
D + ++ GLT+LKS+ +S C VTDSG+ +L + KL LNL C D++S +
Sbjct: 352 DEALGHIAQGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSC-------DNISDI 404
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHL-KGLTNLESLNLDS 285
G + L++ G S I SL V F ++I+D+ L H+ +GL L SL+L+
Sbjct: 405 GMAY--------LTEGG----SGINSLDV---SFCDKISDQALTHIAQGLYRLRSLSLNQ 449
Query: 286 CGIGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLS-GLTNLESINL-SFTGISDGSL 341
C I D+G+V + L L+ L + +++ GL+ L+ LTNL++I+L T +S +
Sbjct: 450 CQITDQGMVKIAKSLQELENLNIGQCSRITDKGLQTLAEDLTNLKTIDLYGCTQLSSKGI 509
Query: 342 RKLAGLSSLKSLNL 355
+ L L+ LNL
Sbjct: 510 DIIMKLPKLQKLNL 523
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 100/311 (32%), Positives = 153/311 (49%), Gaps = 56/311 (18%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAF-----AGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
RG+ + LS RR G+ A +G N+ ++L H V+L L
Sbjct: 203 RGIKKVQILSLRRALKDLVLGVPALTSLNLSGCFNVADMNLG-----HAFSVDLPNL--- 254
Query: 158 ESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLK-GLQKLTLLNLEGC 214
++L++ C ITD+ + ++ L NL++L++ C +T++G+ + GL+KL LNL C
Sbjct: 255 KTLDLSLCKQITDTSLGRIAQHLRNLENLELGGCCNITNTGLLLIAWGLKKLRHLNLRSC 314
Query: 215 PVTA-------ACLDSLSALGSL--FYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-N 262
+ A +A G+L +L L CQ LSD+ ++ + SLK +NL F
Sbjct: 315 WHISDQGIGHLAGFSRETAEGNLQLEHLGLQDCQRLSDEALGHIAQGLTSLKSINLSFCV 374
Query: 263 EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 321
+TD L HL + LE LNL SC I D G+ LT G SG+
Sbjct: 375 SVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTE--------------GGSGI---- 416
Query: 322 GLTNLESINLSF-TGISDGSLRKLA-GLSSLKSLNLDARQITDTGLAALT-SLTGLTHLD 378
S+++SF ISD +L +A GL L+SL+L+ QITD G+ + SL L +L+
Sbjct: 417 -----NSLDVSFCDKISDQALTHIAQGLYRLRSLSLNQCQITDQGMVKIAKSLQELENLN 471
Query: 379 LFG-ARITDSG 388
+ +RITD G
Sbjct: 472 IGQCSRITDKG 482
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 112/209 (53%), Gaps = 16/209 (7%)
Query: 69 VTDSGLIHLKDCS--------NLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAI 119
++D G+ HL S L+ L C ++SD L H+ +GL++L S++ ++
Sbjct: 317 ISDQGIGHLAGFSRETAEGNLQLEHLGLQDCQRLSDEALGHIAQGLTSLKSINLSFCVSV 376
Query: 120 TAQGMKAFAGLINLVKLDLERCTRIHG-GLVNL-KGLMKLESLNIKWCNCITDSDMKPLS 177
T G+K A + L +L+L C I G+ L +G + SL++ +C+ I+D + ++
Sbjct: 377 TDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGSGINSLDVSFCDKISDQALTHIA 436
Query: 178 -GLTNLKSLQISCSKVTDSGIAYL-KGLQKLTLLNLEGCP-VTAACLDSLSA-LGSLFYL 233
GL L+SL ++ ++TD G+ + K LQ+L LN+ C +T L +L+ L +L +
Sbjct: 437 QGLYRLRSLSLNQCQITDQGMVKIAKSLQELENLNIGQCSRITDKGLQTLAEDLTNLKTI 496
Query: 234 NLNRC-QLSDDGCEKFSKIGSLKVLNLGF 261
+L C QLS G + K+ L+ LNLG
Sbjct: 497 DLYGCTQLSSKGIDIIMKLPKLQKLNLGL 525
>gi|254416421|ref|ZP_05030174.1| Leucine Rich Repeat domain protein [Coleofasciculus chthonoplastes
PCC 7420]
gi|196176859|gb|EDX71870.1| Leucine Rich Repeat domain protein [Coleofasciculus chthonoplastes
PCC 7420]
Length = 477
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 105/285 (36%), Positives = 151/285 (52%), Gaps = 29/285 (10%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
QI+D + L GL++LT L N + L L+ D + T I L
Sbjct: 197 QITD--ISPLSGLTSLTVLILYSNQITDISSLSGLTSLTVLILSD-NQITDISP----LS 249
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
GL L++L + N ITD + PLSGLTNL +L ++ +++TD I+ L GL L L L
Sbjct: 250 GLTNLDALYLN-NNQITD--ISPLSGLTNLDALYLNNNQITD--ISPLSGLTNLDALYLN 304
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
+T + LS L +L L LN Q++D S + +L L L N+ITD + L
Sbjct: 305 NNQITD--ISPLSGLTNLDALYLNSNQITD--ISLLSGLTNLDALYLNSNQITD--ISPL 358
Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 332
LTNL L LD+ I D + L+GL NL L L + Q+ + + LSGLTNL + L+
Sbjct: 359 LELTNLNYLILDNNQITD--ISPLSGLTNLTILILDNNQI--TDISPLSGLTNLGGLILN 414
Query: 333 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 377
I+D S L+GL++L LNL++ QITD ++ L+GLT+L
Sbjct: 415 SNQITDVS--PLSGLTNLTVLNLNSNQITD-----VSPLSGLTNL 452
Score = 90.9 bits (224), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 115/318 (36%), Positives = 174/318 (54%), Gaps = 29/318 (9%)
Query: 73 GLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS--FRRNNAITAQGMKAFAGL 130
G +KD S L L + + + + + LS LTSL+ + NN IT +
Sbjct: 84 GYNQIKDVSPLSGLTNLTVLNLWNNQITDISSLSGLTSLTELYLNNNQITDISPLSGLTN 143
Query: 131 INLVKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
+ ++ L+ + T I GL +L GL+ L IK D+ PLSGLTNL L ++
Sbjct: 144 LTVLNLNNNQITDISPLSGLTSLTGLI-LGGNQIK--------DVSPLSGLTNLTVLNLN 194
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 248
+++TD I+ L GL LT+L L +T + SLS L SL L L+ Q++D
Sbjct: 195 NNQITD--ISPLSGLTSLTVLILYSNQITD--ISSLSGLTSLTVLILSDNQITD--ISPL 248
Query: 249 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 308
S + +L L L N+ITD + L GLTNL++L L++ I D + L+GL NL L L+
Sbjct: 249 SGLTNLDALYLNNNQITD--ISPLSGLTNLDALYLNNNQITD--ISPLSGLTNLDALYLN 304
Query: 309 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 368
+ Q+ + + LSGLTNL+++ L+ I+D SL L+GL++L +L L++ QITD ++ L
Sbjct: 305 NNQI--TDISPLSGLTNLDALYLNSNQITDISL--LSGLTNLDALYLNSNQITD--ISPL 358
Query: 369 TSLTGLTHLDLFGARITD 386
LT L +L L +ITD
Sbjct: 359 LELTNLNYLILDNNQITD 376
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 92/241 (38%), Positives = 131/241 (54%), Gaps = 26/241 (10%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVN 150
QI+D + L GL+NL +L + NN IT + +GL NL L L + T I
Sbjct: 241 QITD--ISPLSGLTNLDAL-YLNNNQIT--DISPLSGLTNLDALYLNNNQITDISP---- 291
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
L GL L++L + N ITD + PLSGLTNL +L ++ +++TD I+ L GL L L
Sbjct: 292 LSGLTNLDALYLN-NNQITD--ISPLSGLTNLDALYLNSNQITD--ISLLSGLTNLDALY 346
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
L +T + L L +L YL L+ Q++D S + +L +L L N+ITD +
Sbjct: 347 LNSNQITD--ISPLLELTNLNYLILDNNQITD--ISPLSGLTNLTILILDNNQITD--IS 400
Query: 271 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 330
L GLTNL L L+S I D + L+GL NL L L+ Q+ + + LSGLTNL ++
Sbjct: 401 PLSGLTNLGGLILNSNQITD--VSPLSGLTNLTVLNLNSNQI--TDVSPLSGLTNLRRLH 456
Query: 331 L 331
L
Sbjct: 457 L 457
>gi|290991127|ref|XP_002678187.1| predicted protein [Naegleria gruberi]
gi|284091798|gb|EFC45443.1| predicted protein [Naegleria gruberi]
Length = 265
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 69/245 (28%), Positives = 124/245 (50%), Gaps = 3/245 (1%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSG-LTNLKSLQIS-CSKVTDSGIAYLKGLQKLTL 208
+K L +L+SL I+ I D++ G L L SL IS C + + G+ ++ L KLT
Sbjct: 10 MKKLNQLKSLKIR-SKFIFGEDLRSYIGELKQLNSLNISDCINIGNRGVNVIRELDKLTE 68
Query: 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 268
L+++ C + + A+ L L++N C L G K+ + L + N I+D
Sbjct: 69 LHIDNCCIGEKGAKKIGAMQQLRTLSINGCGLGKKGVASVCKLKDMTKLGIRKNHISDSL 128
Query: 269 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 328
+ + +T L L+ IG EG +++ + NLK L L +G G++++SG+ L S
Sbjct: 129 ALEISQMTKLTELDAGVNDIGPEGAKSISQMTNLKTLLLDFNDIGKEGVKYISGMKQLIS 188
Query: 329 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 388
+N+S I D ++ ++ + +L L++ + I D G ++ ++ LT LD+ +T G
Sbjct: 189 LNISENDIRDKGVKSISEMKNLTCLSVRSNSIGDEGAKYISEMSNLTQLDISCNVLTQKG 248
Query: 389 AAYLR 393
L+
Sbjct: 249 IKLLQ 253
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 61/245 (24%), Positives = 113/245 (46%), Gaps = 28/245 (11%)
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAG-LINLVKLDLERCTRIHGGLVN-LKGLMKLES 159
++ L+ L SL R + I + ++++ G L L L++ C I VN ++ L KL
Sbjct: 10 MKKLNQLKSLKIR-SKFIFGEDLRSYIGELKQLNSLNISDCINIGNRGVNVIRELDKLTE 68
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
L+I C CI + K + + L++L I+ + G+A + L+ +T L + ++ +
Sbjct: 69 LHIDNC-CIGEKGAKKIGAMQQLRTLSINGCGLGKKGVASVCKLKDMTKLGIRKNHISDS 127
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+S + L L+ + +G + S++ +LK L L FN+I E + ++ G+ L
Sbjct: 128 LALEISQMTKLTELDAGVNDIGPEGAKSISQMTNLKTLLLDFNDIGKEGVKYISGMKQLI 187
Query: 280 SLNLD------------------------SCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 315
SLN+ S IGDEG ++ + NL L++S +
Sbjct: 188 SLNISENDIRDKGVKSISEMKNLTCLSVRSNSIGDEGAKYISEMSNLTQLDISCNVLTQK 247
Query: 316 GLRHL 320
G++ L
Sbjct: 248 GIKLL 252
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 57/231 (24%), Positives = 106/231 (45%), Gaps = 31/231 (13%)
Query: 76 HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135
++ + L SL+ + CI I + G+ +R L LT L N I +G K + L
Sbjct: 34 YIGELKQLNSLNISDCINIGNRGVNVIRELDKLTELHID-NCCIGEKGAKKIGAMQQLRT 92
Query: 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDS-------------------DMKP- 175
L + C G+ ++ L + L I+ N I+DS D+ P
Sbjct: 93 LSINGCGLGKKGVASVCKLKDMTKLGIRK-NHISDSLALEISQMTKLTELDAGVNDIGPE 151
Query: 176 ----LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
+S +TNLK+L + + + G+ Y+ G+++L LN+ + + S+S + +L
Sbjct: 152 GAKSISQMTNLKTLLLDFNDIGKEGVKYISGMKQLISLNISENDIRDKGVKSISEMKNLT 211
Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282
L++ + D+G + S++ +L L++ N +T + + L+ ESLN
Sbjct: 212 CLSVRSNSIGDEGAKYISEMSNLTQLDISCNVLTQKGIKLLQ-----ESLN 257
>gi|290980468|ref|XP_002672954.1| predicted protein [Naegleria gruberi]
gi|284086534|gb|EFC40210.1| predicted protein [Naegleria gruberi]
Length = 349
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 114/222 (51%), Gaps = 6/222 (2%)
Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
+K ++ + L SL I +++ G Y+ +++LT LN+ + +S + L
Sbjct: 94 EQLKFVTEMKQLTSLNIRGNRIGVEGAKYISEMKQLTSLNISYNVIGDEGAKYISEMKQL 153
Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
LN+ ++ D+G + S++ L L++ +N I DE ++ G+ L SLN+ IG
Sbjct: 154 ISLNIRENEIGDEGAKYISEMKQLTSLDISYNIIGDEGAKYISGMKQLTSLNIYYTLIGI 213
Query: 291 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 350
EG ++ + L L +S+ ++G G++++S + L S+N+S+ D + ++ + L
Sbjct: 214 EGAKFISEMKQLTSLNISENEIGIEGVKYISEMKQLTSLNISYNRTGDEGAKFISEMKQL 273
Query: 351 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
SLN+ + + ++ + LT L++ G RI GA Y+
Sbjct: 274 TSLNICGK------VKFISEMKQLTSLNIRGNRIGVEGAKYI 309
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 62/273 (22%), Positives = 118/273 (43%), Gaps = 37/273 (13%)
Query: 53 ASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS 112
++ L S+++ G+ + G ++ + L SL+ ++ + I D G +++ + L SL+
Sbjct: 99 VTEMKQLTSLNIRGNRIGVEGAKYISEMKQLTSLNISYNV-IGDEGAKYISEMKQLISLN 157
Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 172
R N I +G K + + L LD+ N I D
Sbjct: 158 IREN-EIGDEGAKYISEMKQLTSLDIS-------------------------YNIIGDEG 191
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
K +SG+ L SL I + + G ++ +++LT LN+ + + +S + L
Sbjct: 192 AKYISGMKQLTSLNIYYTLIGIEGAKFISEMKQLTSLNISENEIGIEGVKYISEMKQLTS 251
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC--LVHLKGLTNLESLNLDSCGIGD 290
LN++ + D+G + S++ L LN+ C + + + L SLN+ IG
Sbjct: 252 LNISYNRTGDEGAKFISEMKQLTSLNI--------CGKVKFISEMKQLTSLNIRGNRIGV 303
Query: 291 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 323
EG ++ + L L + ++G GL H + L
Sbjct: 304 EGAKYISEMKQLTSLNIRGNRIGDQGLNHENSL 336
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 64/129 (49%), Gaps = 3/129 (2%)
Query: 267 ECLVHLKGLTNLE---SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 323
E + LK +T ++ SLN+ IG EG ++ + L L +S +G G +++S +
Sbjct: 91 EAIEQLKFVTEMKQLTSLNIRGNRIGVEGAKYISEMKQLTSLNISYNVIGDEGAKYISEM 150
Query: 324 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 383
L S+N+ I D + ++ + L SL++ I D G ++ + LT L+++
Sbjct: 151 KQLISLNIRENEIGDEGAKYISEMKQLTSLDISYNIIGDEGAKYISGMKQLTSLNIYYTL 210
Query: 384 ITDSGAAYL 392
I GA ++
Sbjct: 211 IGIEGAKFI 219
>gi|300691655|ref|YP_003752650.1| type III effector protein [Ralstonia solanacearum PSI07]
gi|299078715|emb|CBJ51374.1| leucine-rich-repeat type III effector protein (GALA6) [Ralstonia
solanacearum PSI07]
Length = 608
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 129/425 (30%), Positives = 185/425 (43%), Gaps = 44/425 (10%)
Query: 3 PRDISQQIFNELV-YSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWM------DVIASQ 55
PR + + EL SR + V+ RD A+ LG YP + + D + +
Sbjct: 103 PRRAMRAVSRELRDASRAV--VTHLTIRDPAVLR-HLGNYPALKSLRLKGALTLDALKAL 159
Query: 56 GSSLLSVDLS---GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS 112
L +DLS GS ++ +GL HL L+SL I+I G + L ++L SLS
Sbjct: 160 PPGLEHLDLSRCTGSAMSSAGLAHLA-ARPLKSLCM-IGIEIGVEGAQRLAASTSLASLS 217
Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDS 171
I + +A A ++ LDL RI G L G L SLN+ + N I D
Sbjct: 218 LI-GCEIGDRAAEALAASQSIKSLDLS-ANRIGRDGARALAG-APLVSLNL-YSNAIGDE 273
Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
+ L+ L SL +S + + D+G L LT LNL+G + +L+ SL
Sbjct: 274 GARALATSRTLTSLNLSSNGIDDAGAGALADNTLLTQLNLQGNRIGRGGAQALANSTSLT 333
Query: 232 YLNL--NRC----------------------QLSDDGCEKFSKIGSLKVLNLGFNEITDE 267
L+L NR ++ D G + ++ +LK LNL +N I+
Sbjct: 334 DLDLGNNRLGDRGARALAGSKSLTSLSVRGNEIGDKGAKALARNATLKSLNLSYNLISLR 393
Query: 268 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 327
+ L G L L+L +C I G L +L L L ++G G R L+ + L
Sbjct: 394 GVRALGGSATLSVLDLCACDIDSSGASALARNASLASLYLGSNRIGDRGARALAKNSTLT 453
Query: 328 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 387
+ LS GI + LAG SL SL+L +I D G AAL L LDL G RI +
Sbjct: 454 RLALSGNGIHTTGAQALAGNDSLISLDLGGNEIDDDGAAALARHPRLISLDLRGNRIRSA 513
Query: 388 GAAYL 392
GA L
Sbjct: 514 GAQQL 518
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 99/337 (29%), Positives = 150/337 (44%), Gaps = 3/337 (0%)
Query: 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
G+ L+S++L + + D G L L SL+ + I D G L + LT L+ +
Sbjct: 257 GAPLVSLNLYSNAIGDEGARALATSRTLTSLNLSSN-GIDDAGAGALADNTLLTQLNLQ- 314
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
N I G +A A +L LDL G L G L SL+++ N I D K
Sbjct: 315 GNRIGRGGAQALANSTSLTDLDLGNNRLGDRGARALAGSKSLTSLSVRG-NEIGDKGAKA 373
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
L+ LKSL +S + ++ G+ L G L++L+L C + ++ +L+ SL L L
Sbjct: 374 LARNATLKSLNLSYNLISLRGVRALGGSATLSVLDLCACDIDSSGASALARNASLASLYL 433
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
++ D G +K +L L L N I L G +L SL+L I D+G
Sbjct: 434 GSNRIGDRGARALAKNSTLTRLALSGNGIHTTGAQALAGNDSLISLDLGGNEIDDDGAAA 493
Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355
L L L+L ++ S+G + L+ L ++LS I L+ + L +LN+
Sbjct: 494 LARHPRLISLDLRGNRIRSAGAQQLAKSATLAELDLSANRIGAEGAEALSRSTVLTTLNV 553
Query: 356 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
I D G AL T L LD + I + GA L
Sbjct: 554 SDNAIGDAGALALAKSTSLISLDARRSGIGEVGARAL 590
>gi|343420998|emb|CCD18943.1| leucine-rich repeat protein, putative [Trypanosoma vivax Y486]
Length = 1355
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 123/359 (34%), Positives = 176/359 (49%), Gaps = 54/359 (15%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
+DV+ LI SNL++LD + C I+D + L +SNL +L IT +
Sbjct: 62 TDVSPLSLI-----SNLRTLDLSHCTGITD--VSPLSLISNLRTLDLSHCTGIT--DVPP 112
Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD---------------- 170
+ LI L KLDL CT I + L L +LE+LN+ +C ITD
Sbjct: 113 LSMLIRLEKLDLSGCTGI-TDVSPLSKLSRLETLNLMYCTGITDVSPLSKLSRLETLNLM 171
Query: 171 -----SDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
+D+ PLS ++NL SL +S C+ +TD + L L +L L+L GC + L
Sbjct: 172 YCTGITDVSPLSLMSNLCSLYLSHCTGITD--VPPLSMLIRLEKLDLSGC-TGITDVSPL 228
Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNL 283
S L L LNL C D SK+ L+ LNL + ITD + L L+ LE+LNL
Sbjct: 229 SKLSRLETLNLMYCTGITD-VSPLSKLSRLETLNLMYCTGITD--VSPLSKLSRLETLNL 285
Query: 284 DSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS-FTGISDGSL 341
C GI D ++L + NL L LS G + + LS L LE ++LS TGI+D S
Sbjct: 286 MYCTGITDVSPLSL--MSNLCSLYLSHCT-GITDVSPLSMLIRLEKLDLSGCTGITDVS- 341
Query: 342 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD----LFGARITDSGAAYLRSKF 396
L+ LS L++LNL + TG+ ++ L+ L+ L+ ++ ITD L S
Sbjct: 342 -PLSKLSRLETLNL----MYCTGITDVSPLSKLSRLETLNLMYCTGITDVSPLSLMSNL 395
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 111/310 (35%), Positives = 163/310 (52%), Gaps = 30/310 (9%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
+DV+ LI SNL++LD + C I+D + L +SNL SL IT +
Sbjct: 683 TDVSPLSLI-----SNLRTLDLSHCTGITD--VSPLSLMSNLCSLYLSHCTGIT--DVSP 733
Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
+ + NL L L CT I + L L +LE+LN+ +C IT D+ PLS ++NL++L
Sbjct: 734 LSLMSNLCSLYLSHCTGI-TDVPPLSKLSRLETLNLMYCTGIT--DVSPLSLISNLRTLD 790
Query: 187 IS-CSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 244
+S C+ +TD S ++ + L L L + G +T LS L L LNL C D
Sbjct: 791 LSHCTGITDVSPLSLMSNLCSLYLSHCTG--ITDV--PPLSKLSRLETLNLMYCTGITD- 845
Query: 245 CEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNL 302
SK+ L+ LNL + ITD + L L+ LE+LNL C GI D ++L + NL
Sbjct: 846 VSPLSKLSRLETLNLMYCTGITD--VSPLSKLSRLETLNLMYCTGITDVSPLSL--MSNL 901
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLD-ARQI 360
L LS G + + LS L+ LE++NL + TGI+D S L+ +S+L++L+L I
Sbjct: 902 CSLYLSHCT-GITDVSPLSKLSRLETLNLMYCTGITDVS--PLSLISNLRTLDLSHCTGI 958
Query: 361 TDTGLAALTS 370
TD +L S
Sbjct: 959 TDVSPLSLMS 968
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 119/326 (36%), Positives = 169/326 (51%), Gaps = 26/326 (7%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
L D NL++LD +F I+D + L L L +LS IT + + L +L L
Sbjct: 412 LSDFINLRTLDLSFYTGITD--VSPLSMLIRLENLSLSNIAGIT--DVSPLSKLSSLRTL 467
Query: 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDS 195
DL CT I + +L L +LE+LN+ +C IT D+ PLS ++NL SL +S C+ +TD
Sbjct: 468 DLSHCTGI-TDVSSLSKLSRLETLNLMYCTGIT--DVSPLSLMSNLCSLYLSHCTGITD- 523
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
+ L L +L L+L GC + LS L L LNL C D SK+ L+
Sbjct: 524 -VPPLSMLIRLEKLDLSGC-TGITDVSPLSKLSRLETLNLMYCTGITD-VSPLSKLSRLE 580
Query: 256 VLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVG 313
LNL + ITD + L ++NL SL L C GI D + L+ L L+ L+LS G
Sbjct: 581 TLNLMYCTGITD--VSPLSLMSNLCSLYLSHCTGITD--VPPLSMLIRLEKLDLSGCT-G 635
Query: 314 SSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSL 371
+ + LS L+ LE++NL + TGI+D S L+ LS L++LNL ITD ++ L+ +
Sbjct: 636 ITDVSPLSKLSRLETLNLMYCTGITDVS--PLSKLSRLETLNLMYCTGITD--VSPLSLI 691
Query: 372 TGLTHLDLFGAR-ITDSGAAYLRSKF 396
+ L LDL ITD L S
Sbjct: 692 SNLRTLDLSHCTGITDVSPLSLMSNL 717
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 112/346 (32%), Positives = 173/346 (50%), Gaps = 51/346 (14%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
S L++L+ +C I+D + L +SNL SL IT + + LI L KLDL
Sbjct: 577 SRLETLNLMYCTGITD--VSPLSLMSNLCSLYLSHCTGIT--DVPPLSMLIRLEKLDLSG 632
Query: 141 CTRIHGGLVNLKGLMKLESLNIKWCNCITD---------------------SDMKPLSGL 179
CT I + L L +LE+LN+ +C ITD +D+ PLS +
Sbjct: 633 CTGI-TDVSPLSKLSRLETLNLMYCTGITDVSPLSKLSRLETLNLMYCTGITDVSPLSLI 691
Query: 180 TNLKSLQIS-CSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
+NL++L +S C+ +TD S ++ + L L L + G +T LS + +L L L+
Sbjct: 692 SNLRTLDLSHCTGITDVSPLSLMSNLCSLYLSHCTG--ITDV--SPLSLMSNLCSLYLSH 747
Query: 238 CQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVN 295
C D SK+ L+ LNL + ITD + L ++NL +L+L C GI D ++
Sbjct: 748 CTGITD-VPPLSKLSRLETLNLMYCTGITD--VSPLSLISNLRTLDLSHCTGITDVSPLS 804
Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLN 354
L + NL L LS G + + LS L+ LE++NL + TGI+D S L+ LS L++LN
Sbjct: 805 L--MSNLCSLYLSHCT-GITDVPPLSKLSRLETLNLMYCTGITDVS--PLSKLSRLETLN 859
Query: 355 LDARQITDTGLAALTSLTGLTHLD----LFGARITDSGAAYLRSKF 396
L + TG+ ++ L+ L+ L+ ++ ITD L S
Sbjct: 860 L----MYCTGITDVSPLSKLSRLETLNLMYCTGITDVSPLSLMSNL 901
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 114/364 (31%), Positives = 172/364 (47%), Gaps = 64/364 (17%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
S L++L+ +C I+D + L +SNL +L IT + + + NL L L
Sbjct: 922 SRLETLNLMYCTGITD--VSPLSLISNLRTLDLSHCTGIT--DVSPLSLMSNLCSLYLSH 977
Query: 141 CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAY 199
CT I + L L +LE+LN+ +C IT D+ PLS L+ L++L + C+ +TD ++
Sbjct: 978 CTGI-TDVPPLSKLSRLETLNLMYCTGIT--DVSPLSKLSRLETLNLMYCTGITD--VSP 1032
Query: 200 LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC----------------QLSDD 243
L L +L LNL C + LS + +L L L+ C +L
Sbjct: 1033 LSKLSRLETLNLMYC-TGITDVSPLSLMSNLCSLYLSHCTGITDVPPLSMLIRLEKLDLS 1091
Query: 244 GC------EKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVN 295
GC SK+ L+ LNL + ITD + L L+ LE+LNL C GI D ++
Sbjct: 1092 GCTGITDVSPLSKLSRLETLNLMYCTGITD--VSPLSKLSRLETLNLMYCTGITDVSPLS 1149
Query: 296 L-TGLCNL---KCLELSDTQ----------------VGSSGLRHLSGLTNLESINLSF-T 334
L + LC+L C ++D G + + LS L+ LE++NL + T
Sbjct: 1150 LMSNLCSLYLSHCTGITDVPPLSMLIRLEKLDLSGCTGITDVSPLSKLSRLETLNLMYCT 1209
Query: 335 GISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYL 392
GI+D S L+ LS L++LNL ITD ++ L+ L LDL F ITD +
Sbjct: 1210 GITDVS--PLSKLSRLETLNLMYCTGITD--VSPLSDFINLRTLDLSFYTGITDVSPLSM 1265
Query: 393 RSKF 396
+F
Sbjct: 1266 LIRF 1269
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 112/340 (32%), Positives = 162/340 (47%), Gaps = 67/340 (19%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
S L++L+ +C I+D + L +SNL SL IT + + LI L KLDL
Sbjct: 278 SRLETLNLMYCTGITD--VSPLSLMSNLCSLYLSHCTGIT--DVSPLSMLIRLEKLDLSG 333
Query: 141 CTRIHGGLVNLKGLMKLESLNIKWCNCITD---------------------SDMKPLSGL 179
CT I + L L +LE+LN+ +C ITD +D+ PLS +
Sbjct: 334 CTGI-TDVSPLSKLSRLETLNLMYCTGITDVSPLSKLSRLETLNLMYCTGITDVSPLSLM 392
Query: 180 TNLKSLQI-SCSKVTD------------------------SGIAYLKGLQKLTLLNLEGC 214
+NL SL + C+ +TD S ++ L L+ L+L N+ G
Sbjct: 393 SNLCSLNLMYCTGITDVSPLSDFINLRTLDLSFYTGITDVSPLSMLIRLENLSLSNIAG- 451
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLK 273
+T LS L SL L+L+ C D SK+ L+ LNL + ITD + L
Sbjct: 452 -ITDV--SPLSKLSSLRTLDLSHCTGITD-VSSLSKLSRLETLNLMYCTGITD--VSPLS 505
Query: 274 GLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 332
++NL SL L C GI D + L+ L L+ L+LS G + + LS L+ LE++NL
Sbjct: 506 LMSNLCSLYLSHCTGITD--VPPLSMLIRLEKLDLSGCT-GITDVSPLSKLSRLETLNLM 562
Query: 333 F-TGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTS 370
+ TGI+D S L+ LS L++LNL ITD +L S
Sbjct: 563 YCTGITDVS--PLSKLSRLETLNLMYCTGITDVSPLSLMS 600
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 98/315 (31%), Positives = 151/315 (47%), Gaps = 64/315 (20%)
Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD--------------------- 170
NL L L CT I + L L +LE+LN+ +C ITD
Sbjct: 3 NLCSLYLSHCTGI-TDVPPLSKLSRLETLNLMYCTGITDVSPLSKLSRLETLNLMYCTGI 61
Query: 171 SDMKPLSGLTNLKSLQIS-CSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG 228
+D+ PLS ++NL++L +S C+ +TD S ++ + L+ L L + G +T LS L
Sbjct: 62 TDVSPLSLISNLRTLDLSHCTGITDVSPLSLISNLRTLDLSHCTG--ITDV--PPLSMLI 117
Query: 229 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC- 286
L L+L+ C D SK+ L+ LNL + ITD + L L+ LE+LNL C
Sbjct: 118 RLEKLDLSGCTGITD-VSPLSKLSRLETLNLMYCTGITD--VSPLSKLSRLETLNLMYCT 174
Query: 287 GIGDEGLVNL-TGLCNL---KCLELSDTQ----------------VGSSGLRHLSGLTNL 326
GI D ++L + LC+L C ++D G + + LS L+ L
Sbjct: 175 GITDVSPLSLMSNLCSLYLSHCTGITDVPPLSMLIRLEKLDLSGCTGITDVSPLSKLSRL 234
Query: 327 ESINLSF-TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD----LFG 381
E++NL + TGI+D S L+ LS L++LNL + TG+ ++ L+ L+ L+ ++
Sbjct: 235 ETLNLMYCTGITDVS--PLSKLSRLETLNL----MYCTGITDVSPLSKLSRLETLNLMYC 288
Query: 382 ARITDSGAAYLRSKF 396
ITD L S
Sbjct: 289 TGITDVSPLSLMSNL 303
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 76/242 (31%), Positives = 114/242 (47%), Gaps = 51/242 (21%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
S L++L+ +C I+D + L +SNL SL IT + + LI L KLDL
Sbjct: 1129 SRLETLNLMYCTGITD--VSPLSLMSNLCSLYLSHCTGIT--DVPPLSMLIRLEKLDLSG 1184
Query: 141 CTRIH-------------------GGLVNLKGLMKL---ESLNIKWCNCITDSDMKPLSG 178
CT I G+ ++ L KL E+LN+ +C IT D+ PLS
Sbjct: 1185 CTGITDVSPLSKLSRLETLNLMYCTGITDVSPLSKLSRLETLNLMYCTGIT--DVSPLSD 1242
Query: 179 LTNLKSLQIS-CSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL++L +S + +TD S ++ L + L+L N+ G + +S L +L LN+
Sbjct: 1243 FINLRTLDLSFYTGITDVSPLSMLIRFENLSLSNIAG-------ITDVSPLSTLIRLNV- 1294
Query: 237 RCQLSDDGC------EKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GI 288
L GC SK+ L+ LNL + ITD + L ++NL +L+L C GI
Sbjct: 1295 ---LYLSGCTGITDVSPLSKLSRLETLNLMYCTGITD--VSPLSLISNLRTLDLSHCTGI 1349
Query: 289 GD 290
D
Sbjct: 1350 TD 1351
>gi|254417119|ref|ZP_05030865.1| Leucine Rich Repeat domain protein [Coleofasciculus chthonoplastes
PCC 7420]
gi|196176097|gb|EDX71115.1| Leucine Rich Repeat domain protein [Coleofasciculus chthonoplastes
PCC 7420]
Length = 414
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 82/237 (34%), Positives = 133/237 (56%), Gaps = 36/237 (15%)
Query: 171 SDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 229
+D++PLSGLTNL++L + + ++D S + L L+K+ L + + V + LS L +
Sbjct: 86 TDIRPLSGLTNLRTLYLGSNLISDVSPLVELTNLKKVDLSHNQITNV-----NPLSGLTN 140
Query: 230 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 289
L +L+L+R Q+++ S++ +L+ L+LG N+IT+ + L GLTNLE LNL I
Sbjct: 141 LEWLDLSRNQITN--VNPLSELTNLEWLDLGHNQITN--ISPLSGLTNLEFLNLSHNQIT 196
Query: 290 D----EGLVN----------------LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 329
+ L+N L L NL+ + L++ Q+ + +R L LTNLES+
Sbjct: 197 NFRIISALINLKDIALNNNQITDIYPLAELTNLRRISLNNNQI--TTVRPLVQLTNLESL 254
Query: 330 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
+ I+D +R L+ L++L+ L L+ QITD + L+ LT LT L L +ITD
Sbjct: 255 YIGNNQITD--IRPLSQLTNLRQLALNHNQITD--IRPLSQLTNLTGLALSHNQITD 307
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 87/285 (30%), Positives = 139/285 (48%), Gaps = 65/285 (22%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
+DLS + +T+ L + +NL+ LD QI++ + L GL+NL L+ N IT
Sbjct: 144 LDLSRNQITNVN--PLSELTNLEWLDLGHN-QITN--ISPLSGLTNLEFLNLSHN-QIT- 196
Query: 122 QGMKAFAGLINL--VKLDLERCTRIH--GGLVNLK----------------GLMKLESLN 161
+ + LINL + L+ + T I+ L NL+ L LESL
Sbjct: 197 -NFRIISALINLKDIALNNNQITDIYPLAELTNLRRISLNNNQITTVRPLVQLTNLESLY 255
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 221
I N ITD ++PLS LTNL+ L ++ +++TD ++ L +LT NL G
Sbjct: 256 IG-NNQITD--IRPLSQLTNLRQLALNHNQITD-----IRPLSQLT--NLTG-------- 297
Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 281
L L+ Q++D S++ +L+ ++L +N+IT+ + L L NL L
Sbjct: 298 -----------LALSHNQITD--VRPLSQLTNLEWIHLNYNQITN--ITPLVNLNNLTGL 342
Query: 282 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 326
+L S + + + L L NLK ++L Q+ + + LSGLTNL
Sbjct: 343 DLHSNQVTN--VTPLVQLKNLKWIDLRFNQI--TDISSLSGLTNL 383
>gi|406830031|ref|ZP_11089625.1| leucine-rich repeat-containing protein [Schlesneria paludicola DSM
18645]
Length = 306
Score = 90.9 bits (224), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 72/236 (30%), Positives = 117/236 (49%), Gaps = 8/236 (3%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
+ +TD K L+ L +L ++ S + D+ + + L +L L L+ VT A L S+S
Sbjct: 59 HSMTDDAAKQLTAFPALTTLALTDSPIGDAHMGVIGALTQLESLALDHTQVTDAGLQSIS 118
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
+L L LNL C ++D G + + L LNL +I LV+L L LE+L L +
Sbjct: 119 SLEHLRELNLAGCSVTDGGLGSLAGLTELTSLNLNDTQINGLGLVYLSKLNRLEALYLQN 178
Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 345
+ E + L+GL +LK L L+ T+ G +R ++GL +LE + L+ T I D + LA
Sbjct: 179 TVVDFESIPPLSGLESLKILHLAGTKTGGGIVRAITGLPSLERLYLNGTSIKDEDIPALA 238
Query: 346 GL-----SSLKSLNLDARQITDTGLAALTSLTGL---THLDLFGARITDSGAAYLR 393
+ K L ++ ++D L + L L T + + G ++T G LR
Sbjct: 239 AVLAQNCPHFKGLFVEKTALSDAALEPMHPLADLKEFTLIHVHGTKVTKDGVVRLR 294
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/187 (34%), Positives = 95/187 (50%)
Query: 185 LQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 244
+ +S +TD L LT L L P+ A + + AL L L L+ Q++D G
Sbjct: 54 VSLSSHSMTDDAAKQLTAFPALTTLALTDSPIGDAHMGVIGALTQLESLALDHTQVTDAG 113
Query: 245 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 304
+ S + L+ LNL +TD L L GLT L SLNL+ I GLV L+ L L+
Sbjct: 114 LQSISSLEHLRELNLAGCSVTDGGLGSLAGLTELTSLNLNDTQINGLGLVYLSKLNRLEA 173
Query: 305 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 364
L L +T V + LSGL +L+ ++L+ T G +R + GL SL+ L L+ I D
Sbjct: 174 LYLQNTVVDFESIPPLSGLESLKILHLAGTKTGGGIVRAITGLPSLERLYLNGTSIKDED 233
Query: 365 LAALTSL 371
+ AL ++
Sbjct: 234 IPALAAV 240
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 66/124 (53%)
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 315
V++L + +TD+ L L +L L IGD + + L L+ L L TQV +
Sbjct: 53 VVSLSSHSMTDDAAKQLTAFPALTTLALTDSPIGDAHMGVIGALTQLESLALDHTQVTDA 112
Query: 316 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 375
GL+ +S L +L +NL+ ++DG L LAGL+ L SLNL+ QI GL L+ L L
Sbjct: 113 GLQSISSLEHLRELNLAGCSVTDGGLGSLAGLTELTSLNLNDTQINGLGLVYLSKLNRLE 172
Query: 376 HLDL 379
L L
Sbjct: 173 ALYL 176
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 75/261 (28%), Positives = 121/261 (46%), Gaps = 43/261 (16%)
Query: 25 LEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQ 84
L AF AL L L P + D M VI + + L S+ L + VTD+GL + +L+
Sbjct: 69 LTAFP--ALTTLALTDSP-IGDAHMGVIGAL-TQLESLALDHTQVTDAGLQSISSLEHLR 124
Query: 85 SLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI 144
L+ C ++DGGL L GL+ LTSL+ T+I
Sbjct: 125 ELNLAGC-SVTDGGLGSLAGLTELTSLNLND--------------------------TQI 157
Query: 145 HG-GLVNLKGLMKLESLNIKWCNCITDSD-MKPLSGLTNLKSLQISCSKVTDSGIAYLKG 202
+G GLV L L +LE+L ++ N + D + + PLSGL +LK L ++ +K + + G
Sbjct: 158 NGLGLVYLSKLNRLEALYLQ--NTVVDFESIPPLSGLESLKILHLAGTKTGGGIVRAITG 215
Query: 203 LQKLTLLNLEGCPVTAACLDSLSAL-----GSLFYLNLNRCQLSDDGCEKFSKIGSLK-- 255
L L L L G + + +L+A+ L + + LSD E + LK
Sbjct: 216 LPSLERLYLNGTSIKDEDIPALAAVLAQNCPHFKGLFVEKTALSDAALEPMHPLADLKEF 275
Query: 256 -VLNLGFNEITDECLVHLKGL 275
++++ ++T + +V L+ L
Sbjct: 276 TLIHVHGTKVTKDGVVRLRKL 296
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 60/112 (53%)
Query: 281 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 340
++L S + D+ LT L L L+D+ +G + + + LT LES+ L T ++D
Sbjct: 54 VSLSSHSMTDDAAKQLTAFPALTTLALTDSPIGDAHMGVIGALTQLESLALDHTQVTDAG 113
Query: 341 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
L+ ++ L L+ LNL +TD GL +L LT LT L+L +I G YL
Sbjct: 114 LQSISSLEHLRELNLAGCSVTDGGLGSLAGLTELTSLNLNDTQINGLGLVYL 165
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 60/227 (26%), Positives = 100/227 (44%), Gaps = 8/227 (3%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
V LS +TD L L +L I D + + L+ L SL+ +T
Sbjct: 54 VSLSSHSMTDDAAKQLTAFPALTTLALTDS-PIGDAHMGVIGALTQLESLALDHTQ-VTD 111
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
G+++ + L +L +L+L C+ GGL +L GL +L SLN+ I + LS L
Sbjct: 112 AGLQSISSLEHLRELNLAGCSVTDGGLGSLAGLTELTSLNLNDTQ-INGLGLVYLSKLNR 170
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
L++L + + V I L GL+ L +L+L G + +++ L SL L LN +
Sbjct: 171 LEALYLQNTVVDFESIPPLSGLESLKILHLAGTKTGGGIVRAITGLPSLERLYLNGTSIK 230
Query: 242 DDGCEKFSKI-----GSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
D+ + + K L + ++D L + L +L+ L
Sbjct: 231 DEDIPALAAVLAQNCPHFKGLFVEKTALSDAALEPMHPLADLKEFTL 277
>gi|413949465|gb|AFW82114.1| hypothetical protein ZEAMMB73_510951 [Zea mays]
Length = 606
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 109/430 (25%), Positives = 182/430 (42%), Gaps = 86/430 (20%)
Query: 15 VYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSG 73
V+ R + EV L F VN +W+ + S L + L+ ++ +
Sbjct: 69 VFGRSVEEVDLSGFL-------------SVNSEWLAYLGS-FRYLRVLKLADCKNINNDA 114
Query: 74 LIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINL 133
+ L + L+ LD + C +ISD G++H+ + +L L +T G+ + L NL
Sbjct: 115 VWSLSGMNTLKELDLSRCKKISDAGIKHIVTIESLEKLHLSETE-LTDNGVMLISSLTNL 173
Query: 134 VKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT 193
LDL L +L+ L KLE L+I W + T+ L L SL ++ ++V
Sbjct: 174 SFLDLGGILMTDKTLQSLQVLTKLEHLDI-WGSETTNEGASALKSFARLLSLNLALTRVN 232
Query: 194 DSGIAYLKGLQKLTLLNLEGCPVTAAC-------------LDSLSALG------------ 228
I + LN+ C + + C + S + G
Sbjct: 233 HLSIP-----PTTSYLNMSNCEIHSICDVDSEVPVPLENFIVSAATFGNIDKVFSSIQAS 287
Query: 229 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL-TNLESLNLDSCG 287
SL +L+L+ C+LS+ K+ +L+ L+L +N ITD + H+ + TNL+ L+L + G
Sbjct: 288 SLIHLDLSSCKLSN--LSFLEKMKNLEHLDLSYNIITDGAIEHIAKIGTNLQYLSLKNTG 345
Query: 288 IGDEGLVNLTG-LCNLKCLELSDTQVGSSGLRHL-------------------------- 320
I + L L G + NL L L++T++ S L ++
Sbjct: 346 ITSQALCILAGTVPNLTSLSLANTKIDDSALAYIGMIPLLRTIDLSQTSIKGFIHTEVNS 405
Query: 321 ---------SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 371
L LES+NL T +S + LA ++LK L L + ++D L AL++
Sbjct: 406 EKLLSMSAFEHLKYLESLNLEDTPLSAEVIPPLASFATLKYLYLKSDFLSDPALHALSAA 465
Query: 372 TGLTHLDLFG 381
+ L HL G
Sbjct: 466 SNLIHLGFRG 475
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 75/298 (25%), Positives = 137/298 (45%), Gaps = 25/298 (8%)
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLV-NLKGLMKLESLNIKWCNCITDSDMKPL 176
++ ++ + L L L C I+ V +L G+ L+ L++ C I+D+ +K +
Sbjct: 84 SVNSEWLAYLGSFRYLRVLKLADCKNINNDAVWSLSGMNTLKELDLSRCKKISDAGIKHI 143
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ +L+ L +S +++TD+G+ + L L+ L+L G +T L SL L L +L++
Sbjct: 144 VTIESLEKLHLSETELTDNGVMLISSLTNLSFLDLGGILMTDKTLQSLQVLTKLEHLDIW 203
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS-CGIGDEGLVN 295
+ +++G L LNL + + N+ + + S C + E V
Sbjct: 204 GSETTNEGASALKSFARLLSLNLALTRVNHLSIPPTTSYLNMSNCEIHSICDVDSEVPVP 263
Query: 296 LTGLC-------------------NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 336
L +L L+LS ++ S L L + NLE ++LS+ I
Sbjct: 264 LENFIVSAATFGNIDKVFSSIQASSLIHLDLSSCKL--SNLSFLEKMKNLEHLDLSYNII 321
Query: 337 SDGSLRKLAGL-SSLKSLNLDARQITDTGLAALT-SLTGLTHLDLFGARITDSGAAYL 392
+DG++ +A + ++L+ L+L IT L L ++ LT L L +I DS AY+
Sbjct: 322 TDGAIEHIAKIGTNLQYLSLKNTGITSQALCILAGTVPNLTSLSLANTKIDDSALAYI 379
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 80/137 (58%), Gaps = 2/137 (1%)
Query: 260 GFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGL 317
GF + E L +L L L L C I ++ + +L+G+ LK L+LS ++ +G+
Sbjct: 81 GFLSVNSEWLAYLGSFRYLRVLKLADCKNINNDAVWSLSGMNTLKELDLSRCKKISDAGI 140
Query: 318 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 377
+H+ + +LE ++LS T ++D + ++ L++L L+L +TD L +L LT L HL
Sbjct: 141 KHIVTIESLEKLHLSETELTDNGVMLISSLTNLSFLDLGGILMTDKTLQSLQVLTKLEHL 200
Query: 378 DLFGARITDSGAAYLRS 394
D++G+ T+ GA+ L+S
Sbjct: 201 DIWGSETTNEGASALKS 217
>gi|290993162|ref|XP_002679202.1| predicted protein [Naegleria gruberi]
gi|284092818|gb|EFC46458.1| predicted protein [Naegleria gruberi]
Length = 345
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 77/273 (28%), Positives = 131/273 (47%), Gaps = 7/273 (2%)
Query: 122 QGMKAFAGLINLVKLDLERC-TRIHGGLVNLKGLMKLE-SLNIKWCNCITDSDMKPLSGL 179
Q K GL L +L + R G + LK L L N WC T +K L
Sbjct: 14 QDAKYIGGLKQLTRLTIYSSHIRDIGKISELKQLTYLNVPANGIWC--YTTKQVKEFKQL 71
Query: 180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 239
T +L I ++V G Y+ L++LT L+++ + ++ LS L L YLN++
Sbjct: 72 T---TLIIDQNQVGSEGCKYISELKQLTSLSIDENFIYDEGVEYLSELAQLTYLNISNNG 128
Query: 240 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 299
+ +GC+ K+ L L N I E ++ L L+ L++ IGD+GL ++ L
Sbjct: 129 VGSEGCKYVGKMKRLTSLGFYNNRIGKEGAKYISTLNQLKQLDISRTNIGDKGLEHIGQL 188
Query: 300 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 359
L L+L ++G+ G ++LS L L +N+S I + ++ + L L +L ++ +
Sbjct: 189 SQLTSLDLYCNKIGNGGAKYLSELKQLTYLNISENHIGNEGIKYIGELKQLVNLIINNNR 248
Query: 360 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
I + G+ + L LT+L++ RI + G Y+
Sbjct: 249 IGNDGVKYIGELKQLTYLNISENRIGNEGIKYI 281
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 77/285 (27%), Positives = 130/285 (45%), Gaps = 30/285 (10%)
Query: 76 HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135
LK ++L S+D NF I D G+E+L L+ LT L+ NN + ++G K + L
Sbjct: 91 ELKQLTSL-SIDENF---IYDEGVEYLSELAQLTYLNIS-NNGVGSEGCKYVGKMKRLTS 145
Query: 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS 195
L + N I K +S L LK L IS + + D
Sbjct: 146 LGF-------------------------YNNRIGKEGAKYISTLNQLKQLDISRTNIGDK 180
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ ++ L +LT L+L + LS L L YLN++ + ++G + ++ L
Sbjct: 181 GLEHIGQLSQLTSLDLYCNKIGNGGAKYLSELKQLTYLNISENHIGNEGIKYIGELKQLV 240
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 315
L + N I ++ + ++ L L LN+ IG+EG+ + L L + +S +GS
Sbjct: 241 NLIINNNRIGNDGVKYIGELKQLTYLNISENRIGNEGIKYIGDLKQLTNIIISRNWIGSE 300
Query: 316 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
G +++ L+ L S+ LS I + + L+ L L LN++ +I
Sbjct: 301 GAKYIGKLSQLTSLGLSSNNIDNEGAKYLSELKELSFLNIERNKI 345
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 80/294 (27%), Positives = 133/294 (45%), Gaps = 14/294 (4%)
Query: 105 LSNLTSLSFRRNNA--ITAQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLE 158
L LT L+ N T + +K F L L+ ++ E C I L +L
Sbjct: 44 LKQLTYLNVPANGIWCYTTKQVKEFKQLTTLIIDQNQVGSEGCKYISE-------LKQLT 96
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
SL+I N I D ++ LS L L L IS + V G Y+ +++LT L +
Sbjct: 97 SLSID-ENFIYDEGVEYLSELAQLTYLNISNNGVGSEGCKYVGKMKRLTSLGFYNNRIGK 155
Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 278
+S L L L+++R + D G E ++ L L+L N+I + +L L L
Sbjct: 156 EGAKYISTLNQLKQLDISRTNIGDKGLEHIGQLSQLTSLDLYCNKIGNGGAKYLSELKQL 215
Query: 279 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
LN+ IG+EG+ + L L L +++ ++G+ G++++ L L +N+S I +
Sbjct: 216 TYLNISENHIGNEGIKYIGELKQLVNLIINNNRIGNDGVKYIGELKQLTYLNISENRIGN 275
Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
++ + L L ++ + I G + L+ LT L L I + GA YL
Sbjct: 276 EGIKYIGDLKQLTNIIISRNWIGSEGAKYIGKLSQLTSLGLSSNNIDNEGAKYL 329
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 73/314 (23%), Positives = 145/314 (46%), Gaps = 7/314 (2%)
Query: 76 HLKDCSNLQSLDFNFCIQISDGGL-----EHLRGLSNLTSLSFRRNNAITAQGMKAFAGL 130
H++D + L + + G+ + ++ LT+L +N + ++G K + L
Sbjct: 34 HIRDIGKISELKQLTYLNVPANGIWCYTTKQVKEFKQLTTLIIDQN-QVGSEGCKYISEL 92
Query: 131 INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS 190
L L ++ G+ L L +L LNI N + K + + L SL +
Sbjct: 93 KQLTSLSIDENFIYDEGVEYLSELAQLTYLNIS-NNGVGSEGCKYVGKMKRLTSLGFYNN 151
Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 250
++ G Y+ L +L L++ + L+ + L L L+L ++ + G + S+
Sbjct: 152 RIGKEGAKYISTLNQLKQLDISRTNIGDKGLEHIGQLSQLTSLDLYCNKIGNGGAKYLSE 211
Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 310
+ L LN+ N I +E + ++ L L +L +++ IG++G+ + L L L +S+
Sbjct: 212 LKQLTYLNISENHIGNEGIKYIGELKQLVNLIINNNRIGNDGVKYIGELKQLTYLNISEN 271
Query: 311 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 370
++G+ G++++ L L +I +S I + + LS L SL L + I + G L+
Sbjct: 272 RIGNEGIKYIGDLKQLTNIIISRNWIGSEGAKYIGKLSQLTSLGLSSNNIDNEGAKYLSE 331
Query: 371 LTGLTHLDLFGARI 384
L L+ L++ +I
Sbjct: 332 LKELSFLNIERNKI 345
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 91/184 (49%), Gaps = 3/184 (1%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+ L +D+S +++ D GL H+ S L SLD +C +I +GG ++L L LT L+ N
Sbjct: 165 NQLKQLDISRTNIGDKGLEHIGQLSQLTSLDL-YCNKIGNGGAKYLSELKQLTYLNISEN 223
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+ I +G+K L LV L + + G+ + L +L LNI N I + +K +
Sbjct: 224 H-IGNEGIKYIGELKQLVNLIINNNRIGNDGVKYIGELKQLTYLNIS-ENRIGNEGIKYI 281
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
L L ++ IS + + G Y+ L +LT L L + LS L L +LN+
Sbjct: 282 GDLKQLTNIIISRNWIGSEGAKYIGKLSQLTSLGLSSNNIDNEGAKYLSELKELSFLNIE 341
Query: 237 RCQL 240
R ++
Sbjct: 342 RNKI 345
>gi|434399050|ref|YP_007133054.1| leucine-rich repeat-containing protein [Stanieria cyanosphaera PCC
7437]
gi|428270147|gb|AFZ36088.1| leucine-rich repeat-containing protein [Stanieria cyanosphaera PCC
7437]
Length = 842
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 110/319 (34%), Positives = 162/319 (50%), Gaps = 31/319 (9%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLE---HLRGLSNLTSLSFRRNNAITAQGMKAFAGLINL 133
+KD S LQSL + + +E L+ L NLTSLS R A+ + L NL
Sbjct: 169 IKDISPLQSLTNLRELNLKHSPIEDLTPLKSLINLTSLSVR---VYDAKNLIPLKYLTNL 225
Query: 134 VKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD--SDMKPLSGLTNLKSLQISCSK 191
+L + R +++ + L+ L KL L+++ + SD+ L LTNL L ++
Sbjct: 226 TQLSV-RASQL-NNISFLQSLTKLTHLSLRSIKVQVNRASDLSALQSLTNLTHLTLNGYG 283
Query: 192 VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI 251
D ++ L+ L LT L L+G ++++S LG+ + L L ++ FS +
Sbjct: 284 TID--LSVLQSLTNLTQLTLKGF-----SINNISLLGA--FPKLTSLCLIENEINDFSSL 334
Query: 252 GSLKVLN---LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 308
G+L L L N+I+D L+ L+ LTNL SL L+ I D L L L NL L L+
Sbjct: 335 GALTKLTNLILNKNQISD--LIPLQSLTNLTSLALNKNQISD--LTPLQSLTNLTSLALN 390
Query: 309 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD-TGLAA 367
Q+ S L L LTNL S+ L+ ISD L L L++L SL L QI+D T L +
Sbjct: 391 KNQI--SDLTPLQSLTNLTSLTLNKNQISD--LTPLQSLTNLTSLCLVKNQISDLTPLQS 446
Query: 368 LTSLTGLTHLDLFGARITD 386
LT+LT LT+ + +ITD
Sbjct: 447 LTNLTNLTYTNSHSTQITD 465
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 94/308 (30%), Positives = 134/308 (43%), Gaps = 75/308 (24%)
Query: 72 SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLI 131
S L L+ +NL L N I L+ L L+ LT F NN I+ G AF L
Sbjct: 263 SDLSALQSLTNLTHLTLNGYGTIDLSVLQSLTNLTQLTLKGFSINN-ISLLG--AFPKLT 319
Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 191
+L ++ E +L L KL +L + N SD+ PL LTNL SL ++ ++
Sbjct: 320 SLCLIENEI-----NDFSSLGALTKLTNLIL---NKNQISDLIPLQSLTNLTSLALNKNQ 371
Query: 192 VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI 251
++D L L +L +L L LN+ Q+SD
Sbjct: 372 ISD--------------------------LTPLQSLTNLTSLALNKNQISD--------- 396
Query: 252 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD----EGLVNLTGLCNLKCLEL 307
L L+ LTNL SL L+ I D + L NLT LC +K ++
Sbjct: 397 -----------------LTPLQSLTNLTSLTLNKNQISDLTPLQSLTNLTSLCLVKN-QI 438
Query: 308 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD-TGLA 366
SD + L+ L+ LTNL N T I+D + L L+ L +L L+ +I+D T L
Sbjct: 439 SDL----TPLQSLTNLTNLTYTNSHSTQITDFT--PLQSLTKLTNLTLNKNEISDFTPLI 492
Query: 367 ALTSLTGL 374
+LT+LT L
Sbjct: 493 SLTNLTFL 500
Score = 46.2 bits (108), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 76/167 (45%), Gaps = 24/167 (14%)
Query: 238 CQLSDDGCEKFSKIGSLKVLNLG--------------FNEITDECLVHLKGLTNLESLNL 283
C++ DD ++ + +L LNL N ITD L L+ L LE L L
Sbjct: 107 CEIDDDNLDRIKSLTNLTSLNLSTPNVLIYGRTFHYTHNHITD--LKPLRSLAKLEKLEL 164
Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
+ I D + L L NL+ L L + + L L L NL S LS +L
Sbjct: 165 SANPIKD--ISPLQSLTNLRELNLKHSPI--EDLTPLKSLINLTS--LSVRVYDAKNLIP 218
Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 390
L L++L L++ A Q+ + ++ L SLT LTHL L ++ + A+
Sbjct: 219 LKYLTNLTQLSVRASQLNN--ISFLQSLTKLTHLSLRSIKVQVNRAS 263
Score = 44.7 bits (104), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 74/226 (32%), Positives = 107/226 (47%), Gaps = 26/226 (11%)
Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
D + L L NL+ L S S + + ++ L+ L KLT L+L C + LD + +L +L
Sbjct: 66 DFRLLQCLPNLQQLNGSGS-WSGNDLSVLQSLTKLTTLSLLDCEIDDDNLDRIKSLTNLT 124
Query: 232 YLNLNRCQLSDDG------------CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
LNL+ + G + + L+ L L N I D + L+ LTNL
Sbjct: 125 SLNLSTPNVLIYGRTFHYTHNHITDLKPLRSLAKLEKLELSANPIKD--ISPLQSLTNLR 182
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD- 338
LNL I D L L L NL LS + L L LTNL +++ + +++
Sbjct: 183 ELNLKHSPIED--LTPLKSLINLTS--LSVRVYDAKNLIPLKYLTNLTQLSVRASQLNNI 238
Query: 339 ---GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 381
SL KL L SL+S+ + + +D L+AL SLT LTHL L G
Sbjct: 239 SFLQSLTKLTHL-SLRSIKVQVNRASD--LSALQSLTNLTHLTLNG 281
>gi|290993192|ref|XP_002679217.1| predicted protein [Naegleria gruberi]
gi|284092833|gb|EFC46473.1| predicted protein [Naegleria gruberi]
Length = 310
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 78/294 (26%), Positives = 140/294 (47%), Gaps = 3/294 (1%)
Query: 105 LSNLTSLSFR-RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL-KGLMKLESLNI 162
LSN ++ +N+ IT + K L NL KLD+ + +V L L +L LNI
Sbjct: 9 LSNFIFATYAGKNSEITVELAKCICQLKNLKKLDVSYNYHLENEVVELISELRELRELNI 68
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
++C+ I ++K L+ L L SL I +++ G L ++ LT L++ C +
Sbjct: 69 RYCD-IGVEEVKYLTKLDKLHSLDIGINQIYADGAKLLSTMKSLTKLDVAECEIGDEGCQ 127
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282
S++ L L LN+N + G ++ +LK L++ N + + L+ LE LN
Sbjct: 128 SITELYQLTDLNINGDGIGVGGANCIGQMRNLKSLDISNNFFGNYGAKSISELSQLEILN 187
Query: 283 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 342
+ I + G+ L L NL L + ++ G +++ L L +++S I +
Sbjct: 188 VSYSDIDEVGVYQLRKLKNLTSLSIHHNEITDEGTKYIVELDQLTHLDISNNQIETEGAK 247
Query: 343 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRSKF 396
++ +S L SLN+ + I D G ++ L LT L++ R+++ G +R +
Sbjct: 248 SISEMSQLTSLNISSNIIGDEGAQYISHLKKLTSLNVSKCRVSEEGVESIRKQL 301
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 78/170 (45%), Gaps = 27/170 (15%)
Query: 55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
Q +L S+D+S + + G + + S L+ L+ ++ I + G+ LR L NLTSLS
Sbjct: 155 QMRNLKSLDISNNFFGNYGAKSISELSQLEILNVSYS-DIDEVGVYQLRKLKNLTSLSI- 212
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
+N IT +G K L L LD+ N I K
Sbjct: 213 HHNEITDEGTKYIVELDQLTHLDISN-------------------------NQIETEGAK 247
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
+S ++ L SL IS + + D G Y+ L+KLT LN+ C V+ ++S+
Sbjct: 248 SISEMSQLTSLNISSNIIGDEGAQYISHLKKLTSLNVSKCRVSEEGVESI 297
>gi|198456933|ref|XP_001360491.2| GA22149 [Drosophila pseudoobscura pseudoobscura]
gi|198135799|gb|EAL25066.2| GA22149 [Drosophila pseudoobscura pseudoobscura]
Length = 529
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 122/374 (32%), Positives = 189/374 (50%), Gaps = 68/374 (18%)
Query: 7 SQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG 66
S +FN LV R + +V + + R +L+DL LG +L S++LSG
Sbjct: 193 SPSLFNCLV-RRGIKKVQILSLRR-SLKDLVLGV----------------PALTSLNLSG 234
Query: 67 S-DVTDSGLIHL--KDCSNLQSLDFNFCIQISDGGL----EHLRGLSNLTSLSFRRNNAI 119
+V D L H D NL++LD + C QI+D L +HLR NL +L I
Sbjct: 235 CFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLR---NLENLELGGCCNI 291
Query: 120 TAQGMKAFA-GLINLVKLDLERCTRIH-GGLVNLKGL--------MKLESLNIKWCNCIT 169
T G+ A GL L L+L C I G+ +L G ++LE L ++ C ++
Sbjct: 292 TNTGLLLIAWGLKKLRHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEHLGLQDCQRLS 351
Query: 170 DSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
D + ++ GLT+LKS+ +S C VTDSG+ +L + KL LNL C D++S +
Sbjct: 352 DEALGHIAQGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSC-------DNISDI 404
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHL-KGLTNLESLNLDS 285
G + L++ G S I SL V F ++I+D+ L H+ +GL L SL+L+
Sbjct: 405 GMAY--------LTEGG----SGINSLDV---SFCDKISDQALTHIAQGLYRLRSLSLNQ 449
Query: 286 CGIGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLS-GLTNLESINL-SFTGISDGSL 341
C I D+G+V + L L+ L + +++ GL+ L+ LTNL++I+L T +S +
Sbjct: 450 CQITDQGMVKIAKSLQELENLNIGQCSRITDKGLQTLAEDLTNLKTIDLYGCTQLSSKGI 509
Query: 342 RKLAGLSSLKSLNL 355
+ L L+ LNL
Sbjct: 510 DIIMKLPKLQKLNL 523
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 100/311 (32%), Positives = 154/311 (49%), Gaps = 56/311 (18%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAF-----AGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
RG+ + LS RR+ G+ A +G N+ ++L H V+L L
Sbjct: 203 RGIKKVQILSLRRSLKDLVLGVPALTSLNLSGCFNVADMNLG-----HAFSVDLPNL--- 254
Query: 158 ESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLK-GLQKLTLLNLEGC 214
++L++ C ITD+ + ++ L NL++L++ C +T++G+ + GL+KL LNL C
Sbjct: 255 KTLDLSLCKQITDTSLGRIAQHLRNLENLELGGCCNITNTGLLLIAWGLKKLRHLNLRSC 314
Query: 215 PVTA-------ACLDSLSALGSL--FYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-N 262
+ A +A G+L +L L CQ LSD+ ++ + SLK +NL F
Sbjct: 315 WHISDQGIGHLAGFSRETAEGNLQLEHLGLQDCQRLSDEALGHIAQGLTSLKSINLSFCV 374
Query: 263 EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 321
+TD L HL + LE LNL SC I D G+ LT G SG+
Sbjct: 375 SVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTE--------------GGSGI---- 416
Query: 322 GLTNLESINLSF-TGISDGSLRKLA-GLSSLKSLNLDARQITDTGLAALT-SLTGLTHLD 378
S+++SF ISD +L +A GL L+SL+L+ QITD G+ + SL L +L+
Sbjct: 417 -----NSLDVSFCDKISDQALTHIAQGLYRLRSLSLNQCQITDQGMVKIAKSLQELENLN 471
Query: 379 LFG-ARITDSG 388
+ +RITD G
Sbjct: 472 IGQCSRITDKG 482
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 112/209 (53%), Gaps = 16/209 (7%)
Query: 69 VTDSGLIHLKDCS--------NLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAI 119
++D G+ HL S L+ L C ++SD L H+ +GL++L S++ ++
Sbjct: 317 ISDQGIGHLAGFSRETAEGNLQLEHLGLQDCQRLSDEALGHIAQGLTSLKSINLSFCVSV 376
Query: 120 TAQGMKAFAGLINLVKLDLERCTRIHG-GLVNL-KGLMKLESLNIKWCNCITDSDMKPLS 177
T G+K A + L +L+L C I G+ L +G + SL++ +C+ I+D + ++
Sbjct: 377 TDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGSGINSLDVSFCDKISDQALTHIA 436
Query: 178 -GLTNLKSLQISCSKVTDSGIAYL-KGLQKLTLLNLEGCP-VTAACLDSLSA-LGSLFYL 233
GL L+SL ++ ++TD G+ + K LQ+L LN+ C +T L +L+ L +L +
Sbjct: 437 QGLYRLRSLSLNQCQITDQGMVKIAKSLQELENLNIGQCSRITDKGLQTLAEDLTNLKTI 496
Query: 234 NLNRC-QLSDDGCEKFSKIGSLKVLNLGF 261
+L C QLS G + K+ L+ LNLG
Sbjct: 497 DLYGCTQLSSKGIDIIMKLPKLQKLNLGL 525
>gi|440802686|gb|ELR23615.1| leucine rich repeat domain containing protein, partial
[Acanthamoeba castellanii str. Neff]
Length = 431
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 122/395 (30%), Positives = 181/395 (45%), Gaps = 26/395 (6%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
LP ++ ++I L + LT +LE F+ ++ L L V D W+DV+ SSL
Sbjct: 29 LPIEVIERILLYLHRTERLTLEALEFFKAFPVETLFLSNIRAVEDTWLDVLKGY-SSLTY 87
Query: 62 VDLSGS-DVTDSGLIH-LKDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNA 118
+DLS S +TD+GL LK L+SL + C +I+D GL L NL +
Sbjct: 88 LDLSNSYRITDTGLAECLKCMPQLRSLFVDRCKRITDAGLAPLGTHCPNLRRVHVG-GTM 146
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
IT + A L +L + + TR L L+K + W + D +
Sbjct: 147 ITYYALAALNSLEDLQDVSVN-GTRFPDK--ALYTLLKRKEAPDSWA----EEDYGEVRQ 199
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGL-QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN- 236
LT+ Q S + V D G+ LKGL L LNL P A L +L SL +L+++
Sbjct: 200 LTDF---QASRTLVRDDGVRLLKGLGASLHTLNLAFNPGIADW-SFLGSLASLTHLDISL 255
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL-VN 295
+D K+ SL +LNL E+TDE + L L+ L SL++ I L
Sbjct: 256 NVGFTDQFAADVGKLSSLTLLNLSKTELTDEGIPALMELSQLRSLDVGKTAITHRALGPG 315
Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG-LSSLKSLN 354
L L NL L L T VG R+L+ L L S + G L G L +L+
Sbjct: 316 LAKLPNLTALSLPYTNVGGKFSRYLTVLHRLTSFK------TTGLLELAKGRYPHLTALD 369
Query: 355 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 389
+ Q+TD+GLA + L L + +++ ++T+ GA
Sbjct: 370 VGCDQLTDSGLAHIGELAALRNFNMWNTKVTNQGA 404
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 90/323 (27%), Positives = 134/323 (41%), Gaps = 55/323 (17%)
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVN-LKGLMKLESLNIKWCNCITDSDMK 174
A+ + G +L LDL RI GL LK + +L SL + C ITD+ +
Sbjct: 69 RAVEDTWLDVLKGYSSLTYLDLSNSYRITDTGLAECLKCMPQLRSLFVDRCKRITDAGLA 128
Query: 175 PL-SGLTNLKSLQISCSKVTDSGIAYLKGLQKL----------------TLLNLEGCPVT 217
PL + NL+ + + + +T +A L L+ L TLL + P +
Sbjct: 129 PLGTHCPNLRRVHVGGTMITYYALAALNSLEDLQDVSVNGTRFPDKALYTLLKRKEAPDS 188
Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG-SLKVLNLGFNE-ITDECLV-HLKG 274
A D + L +R + DDG +G SL LNL FN I D + L
Sbjct: 189 WAEED-YGEVRQLTDFQASRTLVRDDGVRLLKGLGASLHTLNLAFNPGIADWSFLGSLAS 247
Query: 275 LTNLE-SLNLD-----SCGIG----------------DEGLVNLTGLCNLKCLELSDTQV 312
LT+L+ SLN+ + +G DEG+ L L L+ L++ T +
Sbjct: 248 LTHLDISLNVGFTDQFAADVGKLSSLTLLNLSKTELTDEGIPALMELSQLRSLDVGKTAI 307
Query: 313 GSSGL-RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS- 370
L L+ L NL +++L +T + R L L L S TGL L
Sbjct: 308 THRALGPGLAKLPNLTALSLPYTNVGGKFSRYLTVLHRLTSFK-------TTGLLELAKG 360
Query: 371 -LTGLTHLDLFGARITDSGAAYL 392
LT LD+ ++TDSG A++
Sbjct: 361 RYPHLTALDVGCDQLTDSGLAHI 383
>gi|406831321|ref|ZP_11090915.1| hypothetical protein SpalD1_06780 [Schlesneria paludicola DSM
18645]
Length = 785
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 84/238 (35%), Positives = 123/238 (51%), Gaps = 22/238 (9%)
Query: 177 SGLTNLKSLQIS------CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
+G L++L I CS++TD+ + L GL++L L L G VT+ L ++ L
Sbjct: 541 AGTAQLRALPIVGLNLELCSQLTDATFSSLSGLKQLVALVLSGTNVTSTGLTQVAENLPL 600
Query: 231 FYLNLNRCQ-LSDDGCEKFSKIGSLKVLNL---GFNE--ITDECLVHLKGLTNLESLNLD 284
L L C ++DD C + L+ LNL GF + I+D L LK LT LE LNL
Sbjct: 601 VALELELCDAINDDVCLTLGSMKRLRWLNLKKSGFEKRGISDIGLEQLKTLTELEMLNLY 660
Query: 285 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT------GISD 338
+ D GL++L L L+ L+LS + +G+ LS L +LE +NL FT ++D
Sbjct: 661 GNKVTDAGLIHLQSLKRLRDLDLSLLNLNDAGIESLSPLISLERLNLMFTEGFAGPSLTD 720
Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRSKF 396
+ R L L L LNL+ ++TD+GL L L L L + ++T+SG R KF
Sbjct: 721 RATRSLTPLQQLTWLNLNGSKLTDSGLEQLQELNQLRTLHVVRTKVTESG----REKF 774
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 72/244 (29%), Positives = 124/244 (50%), Gaps = 13/244 (5%)
Query: 60 LSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAI 119
L ++L G+ ++D+G L+ + L+ C Q++D L GL L +L N +
Sbjct: 529 LILNLEGARISDAGTAQLRALP-IVGLNLELCSQLTDATFSSLSGLKQLVALVLSGTN-V 586
Query: 120 TAQGMKAFAGLINLVKLDLERCTRIHGGL-VNLKGLMKLESLNIKWC----NCITDSDMK 174
T+ G+ A + LV L+LE C I+ + + L + +L LN+K I+D ++
Sbjct: 587 TSTGLTQVAENLPLVALELELCDAINDDVCLTLGSMKRLRWLNLKKSGFEKRGISDIGLE 646
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
L LT L+ L + +KVTD+G+ +L+ L++L L+L + A ++SLS L SL LN
Sbjct: 647 QLKTLTELEMLNLYGNKVTDAGLIHLQSLKRLRDLDLSLLNLNDAGIESLSPLISLERLN 706
Query: 235 LNRCQ------LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 288
L + L+D + + L LNL +++TD L L+ L L +L++ +
Sbjct: 707 LMFTEGFAGPSLTDRATRSLTPLQQLTWLNLNGSKLTDSGLEQLQELNQLRTLHVVRTKV 766
Query: 289 GDEG 292
+ G
Sbjct: 767 TESG 770
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 59/169 (34%), Positives = 89/169 (52%), Gaps = 16/169 (9%)
Query: 240 LSDDGC---EKFSKIGSLK---VLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEG 292
LS DG E S++ LK +LNL I+D L+ L + LNL+ C + D
Sbjct: 508 LSADGTISSEIVSQLALLKGRLILNLEGARISDAGTAQLRALP-IVGLNLELCSQLTDAT 566
Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISD------GSLRKLA 345
+L+GL L L LS T V S+GL ++ L ++ L I+D GS+++L
Sbjct: 567 FSSLSGLKQLVALVLSGTNVTSTGLTQVAENLPLVALELELCDAINDDVCLTLGSMKRLR 626
Query: 346 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRS 394
L+ LK + R I+D GL L +LT L L+L+G ++TD+G +L+S
Sbjct: 627 WLN-LKKSGFEKRGISDIGLEQLKTLTELEMLNLYGNKVTDAGLIHLQS 674
>gi|320164611|gb|EFW41510.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 853
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 96/321 (29%), Positives = 136/321 (42%), Gaps = 26/321 (8%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
QI+ GL+ LT LS N IT+ + AFAGL L +LDL
Sbjct: 69 QITGIAPSAFTGLTALTVLSLSYNQ-ITSIPVSAFAGLDALTRLDLSSNLITSISASAFP 127
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS------------------------ 188
L L LN++ N IT +GLT L+ L +S
Sbjct: 128 SLTALTELNLQG-NLITSIPASLFTGLTALRWLPLSNNQITSIAANAFNGLSAVTLIYLQ 186
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 248
+++TD A GL LT L L G +T+ + + L SL L+L ++++ F
Sbjct: 187 TNQITDLSPATFTGLAALTELYLMGNQITSIHASTFAGLTSLENLDLQDNKITEVPASAF 246
Query: 249 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 308
+ + +L L L N+IT+ GLT LE LNL I + L L+ L L
Sbjct: 247 TDLSALTGLTLQDNQITEIPASAFAGLTVLEILNLQGNQITNIPETVFADLTALETLNLQ 306
Query: 309 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 368
D Q+ S + LT L S++L I+ GLS+L L L +ITD +
Sbjct: 307 DNQITSIPASAFADLTALRSLDLQDNNITSIPASVFTGLSALNELKLHTNKITDLSASVF 366
Query: 369 TSLTGLTHLDLFGARITDSGA 389
SLT L L+L +IT+ A
Sbjct: 367 ASLTALAVLELQSNQITEISA 387
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 90/321 (28%), Positives = 137/321 (42%), Gaps = 26/321 (8%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVN 150
QI+D GL+ LT L + N IT+ FAGL +L LDL+ + T +
Sbjct: 189 QITDLSPATFTGLAALTEL-YLMGNQITSIHASTFAGLTSLENLDLQDNKITEVPASAFT 247
Query: 151 ----------------------LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
GL LE LN++ N IT+ + LT L++L +
Sbjct: 248 DLSALTGLTLQDNQITEIPASAFAGLTVLEILNLQG-NQITNIPETVFADLTALETLNLQ 306
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 248
+++T + L L L+L+ +T+ + L +L L L+ +++D F
Sbjct: 307 DNQITSIPASAFADLTALRSLDLQDNNITSIPASVFTGLSALNELKLHTNKITDLSASVF 366
Query: 249 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 308
+ + +L VL L N+IT+ GLT L L+L SC I + T L L+ L L
Sbjct: 367 ASLTALAVLELQSNQITEISANAFTGLTALTKLDLSSCQITSFSVDAFTSLTALRDLYLH 426
Query: 309 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 368
Q+ S +GLT L + L++ I+ GL++L +L L IT
Sbjct: 427 FNQITSIPASAFTGLTALYVLILAYNQITSLPTNTFTGLTALNTLTLSFNPITSISANTF 486
Query: 369 TSLTGLTHLDLFGARITDSGA 389
T LT L L L +IT A
Sbjct: 487 TDLTSLFFLILNNNQITSISA 507
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 87/290 (30%), Positives = 124/290 (42%), Gaps = 36/290 (12%)
Query: 98 GLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL--INLVKLDLERCTRIHGGLVNLKGLM 155
GL LR L NN IT+ AF GL + L+ L + T + GL
Sbjct: 152 GLTALRWLP-------LSNNQITSIAANAFNGLSAVTLIYLQTNQITDLSPA--TFTGLA 202
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215
L L + N IT +GLT+L++L + +K+T+
Sbjct: 203 ALTELYLMG-NQITSIHASTFAGLTSLENLDLQDNKITE--------------------- 240
Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 275
V A+ LSAL L L Q+++ F+ + L++LNL N+IT+ L
Sbjct: 241 VPASAFTDLSALTG---LTLQDNQITEIPASAFAGLTVLEILNLQGNQITNIPETVFADL 297
Query: 276 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 335
T LE+LNL I L L+ L+L D + S +GL+ L + L
Sbjct: 298 TALETLNLQDNQITSIPASAFADLTALRSLDLQDNNITSIPASVFTGLSALNELKLHTNK 357
Query: 336 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
I+D S A L++L L L + QIT+ A T LT LT LDL +IT
Sbjct: 358 ITDLSASVFASLTALAVLELQSNQITEISANAFTGLTALTKLDLSSCQIT 407
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 98/328 (29%), Positives = 146/328 (44%), Gaps = 13/328 (3%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQ---ISDGGLEHLRGLSNLTSLSF 113
++L + L G+ +T IH + L SL+ N +Q I++ LS LT L+
Sbjct: 202 AALTELYLMGNQITS---IHASTFAGLTSLE-NLDLQDNKITEVPASAFTDLSALTGLTL 257
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVNLKGLMKLESLNIKWCNCITDS 171
+ +N IT AFAGL L L+L+ + T I + L LE+LN++ N IT
Sbjct: 258 Q-DNQITEIPASAFAGLTVLEILNLQGNQITNIPETV--FADLTALETLNLQD-NQITSI 313
Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
+ LT L+SL + + +T + GL L L L +T ++L +L
Sbjct: 314 PASAFADLTALRSLDLQDNNITSIPASVFTGLSALNELKLHTNKITDLSASVFASLTALA 373
Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
L L Q+++ F+ + +L L+L +IT + LT L L L I
Sbjct: 374 VLELQSNQITEISANAFTGLTALTKLDLSSCQITSFSVDAFTSLTALRDLYLHFNQITSI 433
Query: 292 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 351
TGL L L L+ Q+ S +GLT L ++ LSF I+ S L+SL
Sbjct: 434 PASAFTGLTALYVLILAYNQITSLPTNTFTGLTALNTLTLSFNPITSISANTFTDLTSLF 493
Query: 352 SLNLDARQITDTGLAALTSLTGLTHLDL 379
L L+ QIT A L GL +L L
Sbjct: 494 FLILNNNQITSISANAFAGLPGLKYLVL 521
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 72/248 (29%), Positives = 114/248 (45%), Gaps = 6/248 (2%)
Query: 139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIA 198
E T I G+ +++L S N IT +GLT L L +S +++T ++
Sbjct: 47 ETLTTIPTGIPVDTTMLRLSS------NQITGIAPSAFTGLTALTVLSLSYNQITSIPVS 100
Query: 199 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 258
GL LT L+L +T+ + +L +L LNL ++ F+ + +L+ L
Sbjct: 101 AFAGLDALTRLDLSSNLITSISASAFPSLTALTELNLQGNLITSIPASLFTGLTALRWLP 160
Query: 259 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 318
L N+IT GL+ + + L + I D TGL L L L Q+ S
Sbjct: 161 LSNNQITSIAANAFNGLSAVTLIYLQTNQITDLSPATFTGLAALTELYLMGNQITSIHAS 220
Query: 319 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 378
+GLT+LE+++L I++ LS+L L L QIT+ +A LT L L+
Sbjct: 221 TFAGLTSLENLDLQDNKITEVPASAFTDLSALTGLTLQDNQITEIPASAFAGLTVLEILN 280
Query: 379 LFGARITD 386
L G +IT+
Sbjct: 281 LQGNQITN 288
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 74/240 (30%), Positives = 113/240 (47%), Gaps = 9/240 (3%)
Query: 115 RNNAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 172
++N IT+ AFA L L LDL+ T I + GL L L + N ITD
Sbjct: 306 QDNQITSIPASAFADLTALRSLDLQDNNITSIPASV--FTGLSALNELKLH-TNKITDLS 362
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
+ LT L L++ +++T+ GL LT L+L C +T+ +D+ ++L +L
Sbjct: 363 ASVFASLTALAVLELQSNQITEISANAFTGLTALTKLDLSSCQITSFSVDAFTSLTALRD 422
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
L L+ Q++ F+ + +L VL L +N+IT GLT L +L L I
Sbjct: 423 LYLHFNQITSIPASAFTGLTALYVLILAYNQITSLPTNTFTGLTALNTLTLSFNPITSIS 482
Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS---FTGISDGSLRKLA-GLS 348
T L +L L L++ Q+ S +GL L+ + LS FT + G + L GLS
Sbjct: 483 ANTFTDLTSLFFLILNNNQITSISANAFAGLPGLKYLVLSDNPFTTLPPGLFQGLPNGLS 542
>gi|41393121|ref|NP_958890.1| F-box and leucine-rich repeat protein 14a [Danio rerio]
gi|37681873|gb|AAQ97814.1| hypothetical protein MGC40195 [Danio rerio]
gi|66911816|gb|AAH96775.1| F-box and leucine-rich repeat protein 14a [Danio rerio]
gi|157423043|gb|AAI53540.1| Fbxl14a protein [Danio rerio]
gi|182891432|gb|AAI64514.1| Fbxl14a protein [Danio rerio]
Length = 411
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 105/312 (33%), Positives = 163/312 (52%), Gaps = 32/312 (10%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + G ++ + L
Sbjct: 68 RGIKKVQILSLRRSLSYVIQGMP------NIESLNLSGCYNLTDNGLGHAFVQDIPSLRI 121
Query: 160 LNIKWCNCITDSDMKPLSG-LTNLKSLQI-SCSKVTDSGIAYLK-GLQKLTLLNLEGC-P 215
LN+ C ITDS + ++ L NL+ L + CS +T++G+ + GL L LNL C
Sbjct: 122 LNLSLCKQITDSSLGRIAQYLKNLELLDLGGCSNITNTGLLLIAWGLHNLKSLNLRSCRH 181
Query: 216 VTAACLDSLSALG--------SLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-NEI 264
V+ + L+ + +L +L L CQ L+D + SK + LKVLNL F I
Sbjct: 182 VSDVGIGHLAGMTRSAAEGCLTLEHLTLQDCQKLTDLSLKHISKGLNKLKVLNLSFCGGI 241
Query: 265 TDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLS 321
+D ++HL +T L +LNL SC I D G+++L+ G L L++S +VG L +++
Sbjct: 242 SDAGMIHLSHMTQLWTLNLRSCDNISDTGIMHLSMGALRLYGLDVSFCDKVGDQSLAYIA 301
Query: 322 -GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALT-SLTGLTHL 377
GL L+S++L ISD + R + + LK+LN+ +ITD GL + LT LT +
Sbjct: 302 QGLYQLKSLSLCSCHISDDGINRMVRQMHELKTLNIGQCVRITDKGLELIADHLTQLTGI 361
Query: 378 DLFG-ARITDSG 388
DL+G +IT G
Sbjct: 362 DLYGCTKITKRG 373
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 105/328 (32%), Positives = 172/328 (52%), Gaps = 50/328 (15%)
Query: 61 SVDLSG-SDVTDSGLIH--LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
S++LSG ++TD+GL H ++D +L+ L+ + C QI+D L +
Sbjct: 94 SLNLSGCYNLTDNGLGHAFVQDIPSLRILNLSLCKQITDSSLGRI--------------- 138
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRI--HGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
AQ +K NL LDL C+ I G L+ GL L+SLN++ C ++D +
Sbjct: 139 ---AQYLK------NLELLDLGGCSNITNTGLLLIAWGLHNLKSLNLRSCRHVSDVGIGH 189
Query: 176 LSGLTN--------LKSLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSL 224
L+G+T L+ L + C K+TD + ++ KGL KL +LNL C ++ A + L
Sbjct: 190 LAGMTRSAAEGCLTLEHLTLQDCQKLTDLSLKHISKGLNKLKVLNLSFCGGISDAGMIHL 249
Query: 225 SALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLE 279
S + L+ LNL C +SD G S +G+L++ L++ F +++ D+ L ++ +GL L+
Sbjct: 250 SHMTQLWTLNLRSCDNISDTGIMHLS-MGALRLYGLDVSFCDKVGDQSLAYIAQGLYQLK 308
Query: 280 SLNLDSCGIGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLS-GLTNLESINL-SFTG 335
SL+L SC I D+G+ + + LK L + ++ GL ++ LT L I+L T
Sbjct: 309 SLSLCSCHISDDGINRMVRQMHELKTLNIGQCVRITDKGLELIADHLTQLTGIDLYGCTK 368
Query: 336 ISDGSLRKLAGLSSLKSLNLDARQITDT 363
I+ L ++ L LK LNL Q+T+
Sbjct: 369 ITKRGLERITQLPCLKVLNLGLWQMTEV 396
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 89/283 (31%), Positives = 140/283 (49%), Gaps = 33/283 (11%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEH 101
+ D + IA +L +DL G S++T++GL+ + NL+SL+ C +SD G+ H
Sbjct: 130 ITDSSLGRIAQYLKNLELLDLGGCSNITNTGLLLIAWGLHNLKSLNLRSCRHVSDVGIGH 189
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNL-KGLMKLES 159
L G++ A G + L L L+ C ++ L ++ KGL KL+
Sbjct: 190 LAGMTR-----------------SAAEGCLTLEHLTLQDCQKLTDLSLKHISKGLNKLKV 232
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK-GLQKLTLLNLEGCPVT 217
LN+ +C I+D+ M LS +T L +L + SC ++D+GI +L G +L L++ C
Sbjct: 233 LNLSFCGGISDAGMIHLSHMTQLWTLNLRSCDNISDTGIMHLSMGALRLYGLDVSFCDKV 292
Query: 218 AACLDSLSALGSLFY----LNLNRCQLSDDGCEKFSK-IGSLKVLNLGF-NEITDECLVH 271
SL+ + Y L+L C +SDDG + + + LK LN+G ITD+ L
Sbjct: 293 GD--QSLAYIAQGLYQLKSLSLCSCHISDDGINRMVRQMHELKTLNIGQCVRITDKGLEL 350
Query: 272 LK-GLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQV 312
+ LT L ++L C I GL +T L LK L L Q+
Sbjct: 351 IADHLTQLTGIDLYGCTKITKRGLERITQLPCLKVLNLGLWQM 393
>gi|421897032|ref|ZP_16327415.1| type III effector gala6 protein [Ralstonia solanacearum MolK2]
gi|206588197|emb|CAQ18765.1| type III effector gala6 protein [Ralstonia solanacearum MolK2]
Length = 625
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 127/408 (31%), Positives = 182/408 (44%), Gaps = 34/408 (8%)
Query: 3 PRDISQQIFNELV-YSRCLTEVSLEAFRDCALQDLCLGQYPGVN------DKWMDVIASQ 55
PR +++ EL SR + V+ RD A+ LG+YP + + ++ + +
Sbjct: 103 PRRAMREVNRELRNASRAV--VTHLTIRDPAMF-AHLGKYPALTSVRFKGELTLEALKAL 159
Query: 56 GSSLLSVDLS---GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS 112
+ +D+S G V+++GL HL L+SL N I+I G L ++LTSLS
Sbjct: 160 PPGVEHLDISRCTGRGVSNAGLAHLA-TRPLKSLSLN-GIEIDAEGARLLATCASLTSLS 217
Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGL--------MKLESLNIKW 164
+I + A A ++ LDL VN+ G L SLN+
Sbjct: 218 LT-GCSIGDRAATALAQSRSIASLDLS---------VNMIGPDGARALASAPLLSLNLH- 266
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
N I D L+ LKSL S + + D+G+ LT LNL G + A +L
Sbjct: 267 NNGIGDEGALALATSGTLKSLNASNNGIGDAGVLGFADNTVLTQLNLAGNMIGPAGARAL 326
Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284
SL L+L+ +L D G + + SL LNL NEI D+ L T L+SLNL
Sbjct: 327 RRNTSLTELDLSTNRLGDAGAQVLAGSRSLTSLNLRHNEIGDDGTEALARNTTLKSLNLS 386
Query: 285 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 344
IG G L G L+ L+L + G L+ T+L S++L I D R L
Sbjct: 387 YNPIGFWGAGALGGSTTLRELDLRCCAIDPYGASALARNTSLASLHLGSNRIGDDGARAL 446
Query: 345 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
A +L L+L I D G AL LT L+L+G + D GAA L
Sbjct: 447 ATSRTLTLLDLSRNNIHDAGAQALAGNGSLTSLNLYGNEVDDDGAAAL 494
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 105/345 (30%), Positives = 150/345 (43%), Gaps = 31/345 (8%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+ LLS++L + + D G + L L+SL+ + I D G+ + LT L+
Sbjct: 258 APLLSLNLHNNGIGDEGALALATSGTLKSLNASNN-GIGDAGVLGFADNTVLTQLNLA-G 315
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N I G +A +L +LDL G L G L SLN++ N I D + L
Sbjct: 316 NMIGPAGARALRRNTSLTELDLSTNRLGDAGAQVLAGSRSLTSLNLRH-NEIGDDGTEAL 374
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC---PVTAACLDSLSALGSLFY- 232
+ T LKSL +S + + G L G L L+L C P A+ L ++L SL
Sbjct: 375 ARNTTLKSLNLSYNPIGFWGAGALGGSTTLRELDLRCCAIDPYGASALARNTSLASLHLG 434
Query: 233 --------------------LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
L+L+R + D G + + GSL LNL NE+ D+ L
Sbjct: 435 SNRIGDDGARALATSRTLTLLDLSRNNIHDAGAQALAGNGSLTSLNLYGNEVDDDGAAAL 494
Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 332
L SLNL IG G +L L L+LS+ ++G G LS T L ++N+S
Sbjct: 495 AQHPRLTSLNLGRNRIGPNGAQHLAKSATLTELDLSENRIGPEGAEALSLSTVLTTLNVS 554
Query: 333 FTGISDGSLRKLAGLS-SLKSLNLDARQITDTG---LAALTSLTG 373
I + R A S SL SL+ + + G L A T LTG
Sbjct: 555 GNAIGEKGARAFAEKSTSLTSLDARNNRRGEAGAKMLEANTRLTG 599
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 103/364 (28%), Positives = 150/364 (41%), Gaps = 30/364 (8%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR-R 115
+SL S+ L+G + D L ++ SLD + + DG R L++ LS
Sbjct: 211 ASLTSLSLTGCSIGDRAATALAQSRSIASLDLSVNMIGPDGA----RALASAPLLSLNLH 266
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
NN I +G A A L L+ G++ L LN+ N I + +
Sbjct: 267 NNGIGDEGALALATSGTLKSLNASNNGIGDAGVLGFADNTVLTQLNLA-GNMIGPAGARA 325
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL-------EGCPVTA--ACLDSLS- 225
L T+L L +S +++ D+G L G + LT LNL +G A L SL+
Sbjct: 326 LRRNTSLTELDLSTNRLGDAGAQVLAGSRSLTSLNLRHNEIGDDGTEALARNTTLKSLNL 385
Query: 226 -----------ALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 271
ALG +L L+L C + G ++ SL L+LG N I D+
Sbjct: 386 SYNPIGFWGAGALGGSTTLRELDLRCCAIDPYGASALARNTSLASLHLGSNRIGDDGARA 445
Query: 272 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 331
L L L+L I D G L G +L L L +V G L+ L S+NL
Sbjct: 446 LATSRTLTLLDLSRNNIHDAGAQALAGNGSLTSLNLYGNEVDDDGAAALAQHPRLTSLNL 505
Query: 332 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
I + LA ++L L+L +I G AL+ T LT L++ G I + GA
Sbjct: 506 GRNRIGPNGAQHLAKSATLTELDLSENRIGPEGAEALSLSTVLTTLNVSGNAIGEKGARA 565
Query: 392 LRSK 395
K
Sbjct: 566 FAEK 569
>gi|290985427|ref|XP_002675427.1| predicted protein [Naegleria gruberi]
gi|284089023|gb|EFC42683.1| predicted protein [Naegleria gruberi]
Length = 324
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 89/325 (27%), Positives = 162/325 (49%), Gaps = 8/325 (2%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L S+D+SG+ + D + + + L SL+ +I D + + + LTSL+ +N
Sbjct: 4 LTSLDISGNGIGDEAKL-ISEMKQLISLNIGKN-EIGDEEAKLISEMKQLTSLNIS-DNL 60
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIH-GGLVNLKGLMKLESLNIKWC-NCITDSDMKPL 176
I +G K + + L L++ C RI G L + +L SLNI C N I D K +
Sbjct: 61 IGDEGAKLISEMKQLTSLNI-CCNRIGVEGAKYLSEMKQLISLNI--CENEIGDEGAKLI 117
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
S L SL I +++ G ++ +++LT L++ + +S + L LN++
Sbjct: 118 SETRQLTSLNIGFTQIGGEGAKFISEMKQLTSLDISDNLIGVEGAKFISEMKQLTSLNIS 177
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
+ D+G + S++ L LN+ N+I E + + + L SL++ + IGDEG +
Sbjct: 178 DNLIGDEGAKLISEMKQLTSLNISNNQIGGEGVKLISEMKQLTSLDISNNQIGDEGAKLI 237
Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
+ + L L +S ++G G + +S + L+S+++S+ I D + ++ + L SLN+
Sbjct: 238 SEMKQLTSLNISGNRIGDEGAKSMSEMKQLKSLDISYNQIGDEGTKLISEMKQLISLNIR 297
Query: 357 ARQITDTGLAALTSLTGLTHLDLFG 381
A +I D G+ + + LT L G
Sbjct: 298 ANRIGDEGVKYIREMKQLTSLTYKG 322
>gi|348514973|ref|XP_003445014.1| PREDICTED: F-box/LRR-repeat protein 14-like [Oreochromis niloticus]
gi|410918767|ref|XP_003972856.1| PREDICTED: F-box/LRR-repeat protein 14-like [Takifugu rubripes]
Length = 400
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 104/312 (33%), Positives = 163/312 (52%), Gaps = 32/312 (10%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + G ++ + L
Sbjct: 68 RGIRRVQILSLRRSLSYVIQGMP------NIESLNLSGCYNLTDNGLGHAFVQEIPSLRV 121
Query: 160 LNIKWCNCITDSDMKPLSG-LTNLKSLQI-SCSKVTDSGIAYLK-GLQKLTLLNLEGCPV 216
LN+ C ITDS + ++ L NL+ L++ CS +T++G+ + GL +L LNL C
Sbjct: 122 LNLSLCKQITDSSLGRIAQYLKNLEVLELGGCSNITNTGLLLIAWGLHRLKSLNLRSCRH 181
Query: 217 TA-------ACLDSLSALG--SLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-NEI 264
+ A + +A G +L YL L CQ L+D + SK + L+VLNL F I
Sbjct: 182 VSDVGIGHLAGMTRSAAEGCLNLEYLTLQDCQKLTDLSLKHISKGLTKLRVLNLSFCGGI 241
Query: 265 TDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLS 321
+D ++HL +T+L SLNL SC I D G ++L G L L++S ++G L +++
Sbjct: 242 SDAGMIHLSHMTSLWSLNLRSCDNISDTGTMHLAMGTLRLSGLDVSFCDKIGDQTLAYIA 301
Query: 322 -GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALT-SLTGLTHL 377
GL L+S++L ISD + R + + L++LN+ +ITD GL + LT L +
Sbjct: 302 QGLYQLKSLSLCSCHISDDGINRMVRQMHELRTLNIGQCVRITDKGLELIADHLTQLVGI 361
Query: 378 DLFG-ARITDSG 388
DL+G +IT G
Sbjct: 362 DLYGCTKITKRG 373
Score = 88.2 bits (217), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 99/308 (32%), Positives = 168/308 (54%), Gaps = 26/308 (8%)
Query: 81 SNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAG-LINLVKLD 137
N++SL+ + C ++D GL H ++ + +L L+ IT + A L NL L+
Sbjct: 90 PNIESLNLSGCYNLTDNGLGHAFVQEIPSLRVLNLSLCKQITDSSLGRIAQYLKNLEVLE 149
Query: 138 LERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT--------NLKSLQI 187
L C+ I G L+ GL +L+SLN++ C ++D + L+G+T NL+ L +
Sbjct: 150 LGGCSNITNTGLLLIAWGLHRLKSLNLRSCRHVSDVGIGHLAGMTRSAAEGCLNLEYLTL 209
Query: 188 S-CSKVTDSGIAYL-KGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDD 243
C K+TD + ++ KGL KL +LNL C ++ A + LS + SL+ LNL C +SD
Sbjct: 210 QDCQKLTDLSLKHISKGLTKLRVLNLSFCGGISDAGMIHLSHMTSLWSLNLRSCDNISDT 269
Query: 244 GCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGLVNLT-G 298
G + +G+L++ L++ F ++I D+ L ++ +GL L+SL+L SC I D+G+ +
Sbjct: 270 GTMHLA-MGTLRLSGLDVSFCDKIGDQTLAYIAQGLYQLKSLSLCSCHISDDGINRMVRQ 328
Query: 299 LCNLKCLELSD-TQVGSSGLRHLS-GLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNL 355
+ L+ L + ++ GL ++ LT L I+L T I+ L ++ L LK LNL
Sbjct: 329 MHELRTLNIGQCVRITDKGLELIADHLTQLVGIDLYGCTKITKRGLERITQLPCLKVLNL 388
Query: 356 DARQITDT 363
Q+T++
Sbjct: 389 GLWQMTES 396
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 87/286 (30%), Positives = 141/286 (49%), Gaps = 33/286 (11%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEH 101
+ D + IA +L ++L G S++T++GL+ + L+SL+ C +SD G+ H
Sbjct: 130 ITDSSLGRIAQYLKNLEVLELGGCSNITNTGLLLIAWGLHRLKSLNLRSCRHVSDVGIGH 189
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNL-KGLMKLES 159
L G++ A G +NL L L+ C ++ L ++ KGL KL
Sbjct: 190 LAGMTR-----------------SAAEGCLNLEYLTLQDCQKLTDLSLKHISKGLTKLRV 232
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK-GLQKLTLLNLEGCPVT 217
LN+ +C I+D+ M LS +T+L SL + SC ++D+G +L G +L+ L++ C
Sbjct: 233 LNLSFCGGISDAGMIHLSHMTSLWSLNLRSCDNISDTGTMHLAMGTLRLSGLDVSFCDKI 292
Query: 218 AACLDSLSALGSLFY----LNLNRCQLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVH 271
+L+ + Y L+L C +SDDG + + + L+ LN+G ITD+ L
Sbjct: 293 GD--QTLAYIAQGLYQLKSLSLCSCHISDDGINRMVRQMHELRTLNIGQCVRITDKGLEL 350
Query: 272 LK-GLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSS 315
+ LT L ++L C I GL +T L LK L L Q+ S
Sbjct: 351 IADHLTQLVGIDLYGCTKITKRGLERITQLPCLKVLNLGLWQMTES 396
>gi|91085811|ref|XP_974701.1| PREDICTED: similar to partner of paired CG9952-PA [Tribolium
castaneum]
Length = 439
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 106/307 (34%), Positives = 158/307 (51%), Gaps = 30/307 (9%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI------HGGLVNLKGLMK 156
RG+ + LS R++ QG+ NL L+L C + H + + L +
Sbjct: 121 RGIKRVQVLSLRKSLRDVIQGIP------NLESLNLRGCYNVGDVGISHAFVADSPTLTE 174
Query: 157 LESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLK-GLQKLTLLNLEG 213
L+ + C +TD+ + ++ L NL+ L++ CS VT+SG+ + GL+KL LNL
Sbjct: 175 LD---LSLCKQVTDTSLTRIAQHLKNLEVLELGGCSNVTNSGLMLIAWGLKKLKRLNLRS 231
Query: 214 C-PVTAACLDSL-SALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF-NEITDECL 269
C V + L S SL +L L CQ LSD+ + + + SL +NL F ITD L
Sbjct: 232 CWHVGDQGIQHLASGNPSLEHLGLQDCQKLSDEALKHATGLTSLISINLSFCVSITDSGL 291
Query: 270 VHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLS-GLTN 325
HL +TNL LNL SC I D G+ L G + L++S ++G L H+S GL N
Sbjct: 292 KHLAKMTNLRELNLRSCDNISDTGMAFLAEGGSRISSLDVSFCDKIGDQALVHISQGLFN 351
Query: 326 LESINLSFTGISDGSLRKLA-GLSSLKSLNL-DARQITDTGLAALT-SLTGLTHLDLFG- 381
L ++ +S +SD L K+A L L++LN+ ++TD GL + SL L +DL+G
Sbjct: 352 LRNLLMSACQLSDEGLAKIANSLHDLETLNIGQCSRVTDKGLTTIAESLLRLKCIDLYGC 411
Query: 382 ARITDSG 388
RIT G
Sbjct: 412 TRITTVG 418
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 105/199 (52%), Gaps = 7/199 (3%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
V D+ + +AS SL + L ++D L H ++L S++ +FC+ I+D GL+HL
Sbjct: 235 VGDQGIQHLASGNPSLEHLGLQDCQKLSDEALKHATGLTSLISINLSFCVSITDSGLKHL 294
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRI-HGGLVNL-KGLMKLES 159
++NL L+ R + I+ GM A G + LD+ C +I LV++ +GL L +
Sbjct: 295 AKMTNLRELNLRSCDNISDTGMAFLAEGGSRISSLDVSFCDKIGDQALVHISQGLFNLRN 354
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCP-V 216
L + C + K + L +L++L I CS+VTD G+ + + L +L ++L GC +
Sbjct: 355 LLMSACQLSDEGLAKIANSLHDLETLNIGQCSRVTDKGLTTIAESLLRLKCIDLYGCTRI 414
Query: 217 TAACLDSLSALGSLFYLNL 235
T L+ + L L LNL
Sbjct: 415 TTVGLERIMKLPQLSVLNL 433
>gi|344174745|emb|CCA86555.1| leucine-rich-repeat type III effector protein (GALA5) [Ralstonia
syzygii R24]
Length = 468
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 96/321 (29%), Positives = 144/321 (44%), Gaps = 13/321 (4%)
Query: 73 GLIHLKDCSNLQSLDFNFCIQISDG--GLEHLRGLSN---LTSLSFRRNNAITAQGMKAF 127
G L + L SLD +S+G G E R L++ LT+LS N I A+G KA
Sbjct: 115 GARRLANHPTLTSLD------VSNGRIGPEGARALADNTKLTTLSVSHNR-IGAEGAKAL 167
Query: 128 AGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
A L LD+ + G L KL +LN+ N I K L+ L SL I
Sbjct: 168 AASKTLTSLDISENGIGNEGACALATNAKLTTLNVNR-NQIGVEGAKALAAGEALTSLDI 226
Query: 188 SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 247
+ + D G+ L +LT LN+E V A + +L+A +L L ++ + D G
Sbjct: 227 GGNDIGDEGVRALAANARLTTLNVERTRVGADGVGALAASKTLTSLRIDSNTIGDAGARA 286
Query: 248 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 307
+ SL L++ N I+ L T L +LNL GIGD G + L L +
Sbjct: 287 LATNTSLTTLHIESNGISPAGAQALAANTTLTTLNLGYNGIGDAGAQAWSANTTLISLSV 346
Query: 308 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 367
+ + +G L+ L +++ I D R LA +L +L++ + +I + G A
Sbjct: 347 RRSGLSDAGATTLAASKTLTTLDAGDNTIRDAGARALAANRTLTTLDVRSNEIENAGARA 406
Query: 368 LTSLTGLTHLDLFGARITDSG 388
L + T L LDL R+T +G
Sbjct: 407 LAANTRLASLDLRNNRVTKAG 427
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 75/261 (28%), Positives = 119/261 (45%), Gaps = 8/261 (3%)
Query: 133 LVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNC----ITDSDMKPLSGLTNLKSLQIS 188
L +LDL RC G + G+ L L + N I + L+ L SL +S
Sbjct: 76 LKELDLSRCR----GPITAAGIAHLSRLPLVRLNVRDKRIGAEGARRLANHPTLTSLDVS 131
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 248
++ G L KLT L++ + A +L+A +L L+++ + ++G
Sbjct: 132 NGRIGPEGARALADNTKLTTLSVSHNRIGAEGAKALAASKTLTSLDISENGIGNEGACAL 191
Query: 249 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 308
+ L LN+ N+I E L L SL++ IGDEG+ L L L +
Sbjct: 192 ATNAKLTTLNVNRNQIGVEGAKALAAGEALTSLDIGGNDIGDEGVRALAANARLTTLNVE 251
Query: 309 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 368
T+VG+ G+ L+ L S+ + I D R LA +SL +L++++ I+ G AL
Sbjct: 252 RTRVGADGVGALAASKTLTSLRIDSNTIGDAGARALATNTSLTTLHIESNGISPAGAQAL 311
Query: 369 TSLTGLTHLDLFGARITDSGA 389
+ T LT L+L I D+GA
Sbjct: 312 AANTTLTTLNLGYNGIGDAGA 332
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 83/277 (29%), Positives = 129/277 (46%), Gaps = 5/277 (1%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
+L S+D+S + + + G L + L +L+ N QI G + L LTSL N+
Sbjct: 172 TLTSLDISENGIGNEGACALATNAKLTTLNVNRN-QIGVEGAKALAAGEALTSLDIGGND 230
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
I +G++A A L L++ER TR+ G+ L L SL I N I D+ + L
Sbjct: 231 -IGDEGVRALAANARLTTLNVER-TRVGADGVGALAASKTLTSLRID-SNTIGDAGARAL 287
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ T+L +L I + ++ +G L LT LNL + A + SA +L L++
Sbjct: 288 ATNTSLTTLHIESNGISPAGAQALAANTTLTTLNLGYNGIGDAGAQAWSANTTLISLSVR 347
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
R LSD G + +L L+ G N I D L L +L++ S I + G L
Sbjct: 348 RSGLSDAGATTLAASKTLTTLDAGDNTIRDAGARALAANRTLTTLDVRSNEIENAGARAL 407
Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333
L L+L + +V +G+R L L S+ +SF
Sbjct: 408 AANTRLASLDLRNNRVTKAGVRALLANRTLSSLGVSF 444
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 79/312 (25%), Positives = 128/312 (41%), Gaps = 27/312 (8%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+ L ++ +S + + G L L SLD + I + G L + LT+L+ RN
Sbjct: 147 TKLTTLSVSHNRIGAEGAKALAASKTLTSLDISEN-GIGNEGACALATNAKLTTLNVNRN 205
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
I +G KA A L LD+ G+ L +L +LN++ D + L
Sbjct: 206 Q-IGVEGAKALAAGEALTSLDIGGNDIGDEGVRALAANARLTTLNVERTRVGADG-VGAL 263
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ L SL+I + + D+G L LT L++E ++ A
Sbjct: 264 AASKTLTSLRIDSNTIGDAGARALATNTSLTTLHIESNGISPA----------------- 306
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
G + + +L LNLG+N I D T L SL++ G+ D G L
Sbjct: 307 -------GAQALAANTTLTTLNLGYNGIGDAGAQAWSANTTLISLSVRRSGLSDAGATTL 359
Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
L L+ D + +G R L+ L ++++ I + R LA + L SL+L
Sbjct: 360 AASKTLTTLDAGDNTIRDAGARALAANRTLTTLDVRSNEIENAGARALAANTRLASLDLR 419
Query: 357 ARQITDTGLAAL 368
++T G+ AL
Sbjct: 420 NNRVTKAGVRAL 431
>gi|290977818|ref|XP_002671634.1| predicted protein [Naegleria gruberi]
gi|284085204|gb|EFC38890.1| predicted protein [Naegleria gruberi]
Length = 359
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 73/267 (27%), Positives = 128/267 (47%), Gaps = 1/267 (0%)
Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
F + L K+ L T G L GL L +++ N + + LS L+ L L
Sbjct: 58 FESMKKLTKVYLSSETIDSKGAKYLAGLNNLTDIHVDSYNNFGNESLYYLSKLSQLTKLS 117
Query: 187 I-SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 245
I S + +T G+ YL L KLT L + G T + +S+ L LN+ +SD
Sbjct: 118 IGSKNNITYEGVEYLSQLSKLTYLCITGNETTDEQVKLISSFKQLKTLNIYSNLISDKSA 177
Query: 246 EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 305
E S + L VL + N+I + + G+ L+ L+ +G+ G+ ++ + L L
Sbjct: 178 EYISNLDELTVLVINNNQIGSKGAKFISGMKQLKQLSDSYTKLGETGVKHICEMTQLTHL 237
Query: 306 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 365
+ +T++G+SG +++ L L+ +++S+ GI++ + L+ L L LN+ I + L
Sbjct: 238 YICNTKIGNSGAKNIIKLKQLQLLDISYNGINNEIVELLSQLDQLTFLNISGSAIDNLAL 297
Query: 366 AALTSLTGLTHLDLFGARITDSGAAYL 392
+ + LT+LD+ I D G Y+
Sbjct: 298 TFINKMNQLTYLDVSYNGINDEGLIYI 324
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 81/336 (24%), Positives = 155/336 (46%), Gaps = 10/336 (2%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLD-FNFCIQISDGGLEHL 102
V+ +W +VI + L++ D G L++ NLQ D F + E +
Sbjct: 6 VSKQWFNVIRNGIKHSLTIR---KDTKLKGQF-LENVENLQVFDKFRLPNRFDCEIFESM 61
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLN 161
+ L+ + + + I ++G K AGL NL + ++ + L L L +L L+
Sbjct: 62 KKLTKV----YLSSETIDSKGAKYLAGLNNLTDIHVDSYNNFGNESLYYLSKLSQLTKLS 117
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 221
I N IT ++ LS L+ L L I+ ++ TD + + ++L LN+ ++
Sbjct: 118 IGSKNNITYEGVEYLSQLSKLTYLCITGNETTDEQVKLISSFKQLKTLNIYSNLISDKSA 177
Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 281
+ +S L L L +N Q+ G + S + LK L+ + ++ + + H+ +T L L
Sbjct: 178 EYISNLDELTVLVINNNQIGSKGAKFISGMKQLKQLSDSYTKLGETGVKHICEMTQLTHL 237
Query: 282 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 341
+ + IG+ G N+ L L+ L++S + + + LS L L +N+S + I + +L
Sbjct: 238 YICNTKIGNSGAKNIIKLKQLQLLDISYNGINNEIVELLSQLDQLTFLNISGSAIDNLAL 297
Query: 342 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 377
+ ++ L L++ I D GL ++ + L +
Sbjct: 298 TFINKMNQLTYLDVSYNGINDEGLIYISKMKPLKQV 333
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 65/285 (22%), Positives = 123/285 (43%), Gaps = 30/285 (10%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L V LS + G +L +NL + + + L +L LS LT LS N
Sbjct: 64 LTKVYLSSETIDSKGAKYLAGLNNLTDIHVDSYNNFGNESLYYLSKLSQLTKLSIGSKNN 123
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
IT +G++ + L L L + + + +L++LNI + N I+D + +S
Sbjct: 124 ITYEGVEYLSQLSKLTYLCITGNETTDEQVKLISSFKQLKTLNI-YSNLISDKSAEYISN 182
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
L L L I+ +++ G ++ G+++L L+ + + + + L +L +
Sbjct: 183 LDELTVLVINNNQIGSKGAKFISGMKQLKQLSDSYTKLGETGVKHICEMTQLTHLYICNT 242
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDE------------------------CLVHLKG 274
++ + G + K+ L++L++ +N I +E L +
Sbjct: 243 KIGNSGAKNIIKLKQLQLLDISYNGINNEIVELLSQLDQLTFLNISGSAIDNLALTFINK 302
Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLCNLK-----CLELSDTQVGS 314
+ L L++ GI DEGL+ ++ + LK L+LS Q+GS
Sbjct: 303 MNQLTYLDVSYNGINDEGLIYISKMKPLKQVGIGFLQLSRNQMGS 347
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 73/150 (48%), Gaps = 2/150 (1%)
Query: 245 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLK 303
CE F + L + L I + +L GL NL +++DS G+E L L+ L L
Sbjct: 55 CEIFESMKKLTKVYLSSETIDSKGAKYLAGLNNLTDIHVDSYNNFGNESLYYLSKLSQLT 114
Query: 304 CLEL-SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L + S + G+ +LS L+ L + ++ +D ++ ++ LK+LN+ + I+D
Sbjct: 115 KLSIGSKNNITYEGVEYLSQLSKLTYLCITGNETTDEQVKLISSFKQLKTLNIYSNLISD 174
Query: 363 TGLAALTSLTGLTHLDLFGARITDSGAAYL 392
+++L LT L + +I GA ++
Sbjct: 175 KSAEYISNLDELTVLVINNNQIGSKGAKFI 204
Score = 42.4 bits (98), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
Query: 307 LSDTQVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNLDARQ-ITDTG 364
LS + S G ++L+GL NL I++ S+ + SL L+ LS L L++ ++ IT G
Sbjct: 69 LSSETIDSKGAKYLAGLNNLTDIHVDSYNNFGNESLYYLSKLSQLTKLSIGSKNNITYEG 128
Query: 365 LAALTSLTGLTHLDLFGARITDSGAAYLRS 394
+ L+ L+ LT+L + G TD + S
Sbjct: 129 VEYLSQLSKLTYLCITGNETTDEQVKLISS 158
>gi|270010132|gb|EFA06580.1| hypothetical protein TcasGA2_TC009492 [Tribolium castaneum]
Length = 474
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 106/307 (34%), Positives = 158/307 (51%), Gaps = 30/307 (9%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI------HGGLVNLKGLMK 156
RG+ + LS R++ QG+ NL L+L C + H + + L +
Sbjct: 156 RGIKRVQVLSLRKSLRDVIQGIP------NLESLNLRGCYNVGDVGISHAFVADSPTLTE 209
Query: 157 LESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLK-GLQKLTLLNLEG 213
L+ + C +TD+ + ++ L NL+ L++ CS VT+SG+ + GL+KL LNL
Sbjct: 210 LD---LSLCKQVTDTSLTRIAQHLKNLEVLELGGCSNVTNSGLMLIAWGLKKLKRLNLRS 266
Query: 214 C-PVTAACLDSL-SALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF-NEITDECL 269
C V + L S SL +L L CQ LSD+ + + + SL +NL F ITD L
Sbjct: 267 CWHVGDQGIQHLASGNPSLEHLGLQDCQKLSDEALKHATGLTSLISINLSFCVSITDSGL 326
Query: 270 VHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLS-GLTN 325
HL +TNL LNL SC I D G+ L G + L++S ++G L H+S GL N
Sbjct: 327 KHLAKMTNLRELNLRSCDNISDTGMAFLAEGGSRISSLDVSFCDKIGDQALVHISQGLFN 386
Query: 326 LESINLSFTGISDGSLRKLA-GLSSLKSLNL-DARQITDTGLAALT-SLTGLTHLDLFG- 381
L ++ +S +SD L K+A L L++LN+ ++TD GL + SL L +DL+G
Sbjct: 387 LRNLLMSACQLSDEGLAKIANSLHDLETLNIGQCSRVTDKGLTTIAESLLRLKCIDLYGC 446
Query: 382 ARITDSG 388
RIT G
Sbjct: 447 TRITTVG 453
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 105/199 (52%), Gaps = 7/199 (3%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
V D+ + +AS SL + L ++D L H ++L S++ +FC+ I+D GL+HL
Sbjct: 270 VGDQGIQHLASGNPSLEHLGLQDCQKLSDEALKHATGLTSLISINLSFCVSITDSGLKHL 329
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRI-HGGLVNL-KGLMKLES 159
++NL L+ R + I+ GM A G + LD+ C +I LV++ +GL L +
Sbjct: 330 AKMTNLRELNLRSCDNISDTGMAFLAEGGSRISSLDVSFCDKIGDQALVHISQGLFNLRN 389
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCP-V 216
L + C + K + L +L++L I CS+VTD G+ + + L +L ++L GC +
Sbjct: 390 LLMSACQLSDEGLAKIANSLHDLETLNIGQCSRVTDKGLTTIAESLLRLKCIDLYGCTRI 449
Query: 217 TAACLDSLSALGSLFYLNL 235
T L+ + L L LNL
Sbjct: 450 TTVGLERIMKLPQLSVLNL 468
>gi|149173873|ref|ZP_01852502.1| hypothetical protein PM8797T_05530 [Planctomyces maris DSM 8797]
gi|148847403|gb|EDL61737.1| hypothetical protein PM8797T_05530 [Planctomyces maris DSM 8797]
Length = 473
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 92/324 (28%), Positives = 152/324 (46%), Gaps = 27/324 (8%)
Query: 66 GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN----NAITA 121
G+ + +G + S L++ + + C ++D L L+GL L L N + ++
Sbjct: 111 GNSFSPAGWKQIGQISGLEAFNVS-CQYVTDEHLMGLQGLPQLKDLKILNNCMKQSPVSD 169
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGL------MKLESLNIKWCNCITDSDMKP 175
QG++ + L +L L H +N++G +L +L + W ITD +KP
Sbjct: 170 QGLQVLSSFPALRRLVL------HSREINVRGCELIGDCTELRALEL-W-GPITDECLKP 221
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
L L NLK L I +D+G+ +L GL++LT L L +T + L+S + L
Sbjct: 222 LGKLKNLKHL-IVVGTFSDAGLKHLSGLKQLTRLVLHSDQMTGSGLNSFAEAPELREFGF 280
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
+ + ++ ++ L VLNL + D L + L LE+L+L + I D+GL
Sbjct: 281 SGSPAGNATLKQLDQLPGLAVLNLSTPSVNDAVLQTMPDLPQLEALSLKNSNITDKGLDA 340
Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG----ISDGSLRKLAGLSSLK 351
L + NL+ L L T++ ++GL L L L + L G I+ L L LS L+
Sbjct: 341 LVKVKNLRELVLYSTEITNAGLIRLEPLQQLRLLVLGNPGHTELITGKGLESLTKLSRLE 400
Query: 352 SLNLD---ARQITDTGLAALTSLT 372
L++D A Q+ LA +SL
Sbjct: 401 VLDIDYVNAEQLDLRPLARCSSLV 424
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 82/281 (29%), Positives = 128/281 (45%), Gaps = 41/281 (14%)
Query: 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG 196
+L TR+ G L + ++ N + + K + ++ L++ +SC VTD
Sbjct: 93 ELPMLTRVEG----------LRAFDMFDGNSFSPAGWKQIGQISGLEAFNVSCQYVTDEH 142
Query: 197 IAYLKGLQKLT---LLN--LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI 251
+ L+GL +L +LN ++ PV+ L LS+ +L L L+ +++ GCE
Sbjct: 143 LMGLQGLPQLKDLKILNNCMKQSPVSDQGLQVLSSFPALRRLVLHSREINVRGCELIGDC 202
Query: 252 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 311
L+ L L + ITDECL L L NL+ L + D GL +L+GL L L L Q
Sbjct: 203 TELRALEL-WGPITDECLKPLGKLKNLKHLIVVGT-FSDAGLKHLSGLKQLTRLVLHSDQ 260
Query: 312 VGSSGL------------------------RHLSGLTNLESINLSFTGISDGSLRKLAGL 347
+ SGL + L L L +NLS ++D L+ + L
Sbjct: 261 MTGSGLNSFAEAPELREFGFSGSPAGNATLKQLDQLPGLAVLNLSTPSVNDAVLQTMPDL 320
Query: 348 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 388
L++L+L ITD GL AL + L L L+ IT++G
Sbjct: 321 PQLEALSLKNSNITDKGLDALVKVKNLRELVLYSTEITNAG 361
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 70/246 (28%), Positives = 105/246 (42%), Gaps = 30/246 (12%)
Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQI-----SCSKVTDSGIAYL---KGLQKLTL 208
LE+ N+ C +TD + L GL LK L+I S V+D G+ L L++L L
Sbjct: 128 LEAFNVS-CQYVTDEHLMGLQGLPQLKDLKILNNCMKQSPVSDQGLQVLSSFPALRRLVL 186
Query: 209 ----LNLEGC----------------PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 248
+N+ GC P+T CL L L +L +L + SD G +
Sbjct: 187 HSREINVRGCELIGDCTELRALELWGPITDECLKPLGKLKNLKHL-IVVGTFSDAGLKHL 245
Query: 249 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 308
S + L L L +++T L L G+ L L L L L LS
Sbjct: 246 SGLKQLTRLVLHSDQMTGSGLNSFAEAPELREFGFSGSPAGNATLKQLDQLPGLAVLNLS 305
Query: 309 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 368
V + L+ + L LE+++L + I+D L L + +L+ L L + +IT+ GL L
Sbjct: 306 TPSVNDAVLQTMPDLPQLEALSLKNSNITDKGLDALVKVKNLRELVLYSTEITNAGLIRL 365
Query: 369 TSLTGL 374
L L
Sbjct: 366 EPLQQL 371
>gi|195346821|ref|XP_002039953.1| GM15616 [Drosophila sechellia]
gi|194135302|gb|EDW56818.1| GM15616 [Drosophila sechellia]
Length = 538
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 121/374 (32%), Positives = 188/374 (50%), Gaps = 68/374 (18%)
Query: 7 SQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG 66
S +FN LV R + +V + + R +L+DL LG +L S++LSG
Sbjct: 202 SPSLFNCLV-KRGIKKVQILSLRR-SLKDLVLGV----------------PALTSLNLSG 243
Query: 67 S-DVTDSGLIHL--KDCSNLQSLDFNFCIQISDGGL----EHLRGLSNLTSLSFRRNNAI 119
+V D L H D NL++LD + C QI+D L +HLR NL +L I
Sbjct: 244 CFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLR---NLETLELGGCCNI 300
Query: 120 TAQGMKAFA-GLINLVKLDLERCTRIH-GGLVNLKGL--------MKLESLNIKWCNCIT 169
T G+ A GL L L+L C I G+ +L G ++LE L ++ C ++
Sbjct: 301 TNTGLLLIAWGLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEYLGLQDCQRLS 360
Query: 170 DSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
D + ++ GLT+LKS+ +S C VTDSG+ +L + KL LNL C D++S +
Sbjct: 361 DEALGHIAQGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSC-------DNISDI 413
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHL-KGLTNLESLNLDS 285
G + L++ G S I SL V F ++I+D+ L H+ +GL L SL+L+
Sbjct: 414 GMAY--------LTEGG----SGINSLDV---SFCDKISDQALTHIAQGLYRLRSLSLNQ 458
Query: 286 CGIGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLS-GLTNLESINL-SFTGISDGSL 341
C I D G++ + L L+ L + +++ GL+ L+ LTNL++I+L T +S +
Sbjct: 459 CQITDHGMLKIAKALHELENLNIGQCSRITDKGLQTLAEDLTNLKTIDLYGCTQLSSKGI 518
Query: 342 RKLAGLSSLKSLNL 355
+ L L+ LNL
Sbjct: 519 DIIMKLPKLQKLNL 532
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 98/306 (32%), Positives = 155/306 (50%), Gaps = 35/306 (11%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAF-----AGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
RG+ + LS RR+ G+ A +G N+ ++L + L L
Sbjct: 212 RGIKKVQILSLRRSLKDLVLGVPALTSLNLSGCFNVADMNLGHAFSV--------DLPNL 263
Query: 158 ESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLK-GLQKLTLLNLEGC 214
++L++ C ITD+ + ++ L NL++L++ C +T++G+ + GL+KL LNL C
Sbjct: 264 KTLDLSLCKQITDTSLGRIAQHLRNLETLELGGCCNITNTGLLLIAWGLKKLKHLNLRSC 323
Query: 215 PVTA-------ACLDSLSALGSL--FYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-N 262
+ A +A G+L YL L CQ LSD+ ++ + SLK +NL F
Sbjct: 324 WHISDQGIGHLAGFSRETAEGNLQLEYLGLQDCQRLSDEALGHIAQGLTSLKSINLSFCV 383
Query: 263 EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRH 319
+TD L HL + LE LNL SC I D G+ LT G + L++S ++ L H
Sbjct: 384 SVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGSGINSLDVSFCDKISDQALTH 443
Query: 320 LS-GLTNLESINLSFTGISDGSLRKLA-GLSSLKSLNL-DARQITDTGLAALTS-LTGLT 375
++ GL L S++L+ I+D + K+A L L++LN+ +ITD GL L LT L
Sbjct: 444 IAQGLYRLRSLSLNQCQITDHGMLKIAKALHELENLNIGQCSRITDKGLQTLAEDLTNLK 503
Query: 376 HLDLFG 381
+DL+G
Sbjct: 504 TIDLYG 509
>gi|442624469|ref|NP_001261138.1| partner of paired, isoform B [Drosophila melanogaster]
gi|440214583|gb|AGB93669.1| partner of paired, isoform B [Drosophila melanogaster]
Length = 562
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 121/374 (32%), Positives = 188/374 (50%), Gaps = 68/374 (18%)
Query: 7 SQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG 66
S +FN LV R + +V + + R +L+DL LG +L S++LSG
Sbjct: 202 SPSLFNCLV-KRGIKKVQILSLRR-SLKDLVLGV----------------PALTSLNLSG 243
Query: 67 S-DVTDSGLIHL--KDCSNLQSLDFNFCIQISDGGL----EHLRGLSNLTSLSFRRNNAI 119
+V D L H D NL++LD + C QI+D L +HLR NL +L I
Sbjct: 244 CFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLR---NLETLELGGCCNI 300
Query: 120 TAQGMKAFA-GLINLVKLDLERCTRIH-GGLVNLKGL--------MKLESLNIKWCNCIT 169
T G+ A GL L L+L C I G+ +L G ++LE L ++ C ++
Sbjct: 301 TNTGLLLIAWGLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEYLGLQDCQRLS 360
Query: 170 DSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
D + ++ GLT+LKS+ +S C VTDSG+ +L + KL LNL C D++S +
Sbjct: 361 DEALGHIAQGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSC-------DNISDI 413
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHL-KGLTNLESLNLDS 285
G + L++ G S I SL V F ++I+D+ L H+ +GL L SL+L+
Sbjct: 414 GMAY--------LTEGG----SGINSLDV---SFCDKISDQALTHIAQGLYRLRSLSLNQ 458
Query: 286 CGIGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLS-GLTNLESINL-SFTGISDGSL 341
C I D G++ + L L+ L + +++ GL+ L+ LTNL++I+L T +S +
Sbjct: 459 CQITDHGMLKIAKALHELENLNIGQCSRITDKGLQTLAEDLTNLKTIDLYGCTQLSSKGI 518
Query: 342 RKLAGLSSLKSLNL 355
+ L L+ LNL
Sbjct: 519 DIIMKLPKLQKLNL 532
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 98/306 (32%), Positives = 155/306 (50%), Gaps = 35/306 (11%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAF-----AGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
RG+ + LS RR+ G+ A +G N+ ++L + L L
Sbjct: 212 RGIKKVQILSLRRSLKDLVLGVPALTSLNLSGCFNVADMNLGHAFSV--------DLPNL 263
Query: 158 ESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLK-GLQKLTLLNLEGC 214
++L++ C ITD+ + ++ L NL++L++ C +T++G+ + GL+KL LNL C
Sbjct: 264 KTLDLSLCKQITDTSLGRIAQHLRNLETLELGGCCNITNTGLLLIAWGLKKLKHLNLRSC 323
Query: 215 PVTA-------ACLDSLSALGSL--FYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-N 262
+ A +A G+L YL L CQ LSD+ ++ + SLK +NL F
Sbjct: 324 WHISDQGIGHLAGFSRETAEGNLQLEYLGLQDCQRLSDEALGHIAQGLTSLKSINLSFCV 383
Query: 263 EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRH 319
+TD L HL + LE LNL SC I D G+ LT G + L++S ++ L H
Sbjct: 384 SVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGSGINSLDVSFCDKISDQALTH 443
Query: 320 LS-GLTNLESINLSFTGISDGSLRKLA-GLSSLKSLNL-DARQITDTGLAALTS-LTGLT 375
++ GL L S++L+ I+D + K+A L L++LN+ +ITD GL L LT L
Sbjct: 444 IAQGLYRLRSLSLNQCQITDHGMLKIAKALHELENLNIGQCSRITDKGLQTLAEDLTNLK 503
Query: 376 HLDLFG 381
+DL+G
Sbjct: 504 TIDLYG 509
>gi|17647819|ref|NP_523812.1| partner of paired, isoform A [Drosophila melanogaster]
gi|194884489|ref|XP_001976275.1| GG20101 [Drosophila erecta]
gi|10441427|gb|AAG17034.1|AF187980_1 Partner of Paired [Drosophila melanogaster]
gi|7291460|gb|AAF46886.1| partner of paired, isoform A [Drosophila melanogaster]
gi|21430560|gb|AAM50958.1| RE01138p [Drosophila melanogaster]
gi|190659462|gb|EDV56675.1| GG20101 [Drosophila erecta]
gi|220947678|gb|ACL86382.1| CG9952-PA [synthetic construct]
gi|220957060|gb|ACL91073.1| ppa-PA [synthetic construct]
Length = 538
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 121/374 (32%), Positives = 188/374 (50%), Gaps = 68/374 (18%)
Query: 7 SQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG 66
S +FN LV R + +V + + R +L+DL LG +L S++LSG
Sbjct: 202 SPSLFNCLV-KRGIKKVQILSLRR-SLKDLVLGV----------------PALTSLNLSG 243
Query: 67 S-DVTDSGLIHL--KDCSNLQSLDFNFCIQISDGGL----EHLRGLSNLTSLSFRRNNAI 119
+V D L H D NL++LD + C QI+D L +HLR NL +L I
Sbjct: 244 CFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLR---NLETLELGGCCNI 300
Query: 120 TAQGMKAFA-GLINLVKLDLERCTRIH-GGLVNLKGL--------MKLESLNIKWCNCIT 169
T G+ A GL L L+L C I G+ +L G ++LE L ++ C ++
Sbjct: 301 TNTGLLLIAWGLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEYLGLQDCQRLS 360
Query: 170 DSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
D + ++ GLT+LKS+ +S C VTDSG+ +L + KL LNL C D++S +
Sbjct: 361 DEALGHIAQGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSC-------DNISDI 413
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHL-KGLTNLESLNLDS 285
G + L++ G S I SL V F ++I+D+ L H+ +GL L SL+L+
Sbjct: 414 GMAY--------LTEGG----SGINSLDV---SFCDKISDQALTHIAQGLYRLRSLSLNQ 458
Query: 286 CGIGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLS-GLTNLESINL-SFTGISDGSL 341
C I D G++ + L L+ L + +++ GL+ L+ LTNL++I+L T +S +
Sbjct: 459 CQITDHGMLKIAKALHELENLNIGQCSRITDKGLQTLAEDLTNLKTIDLYGCTQLSSKGI 518
Query: 342 RKLAGLSSLKSLNL 355
+ L L+ LNL
Sbjct: 519 DIIMKLPKLQKLNL 532
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 98/306 (32%), Positives = 155/306 (50%), Gaps = 35/306 (11%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAF-----AGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
RG+ + LS RR+ G+ A +G N+ ++L + L L
Sbjct: 212 RGIKKVQILSLRRSLKDLVLGVPALTSLNLSGCFNVADMNLGHAFSV--------DLPNL 263
Query: 158 ESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLK-GLQKLTLLNLEGC 214
++L++ C ITD+ + ++ L NL++L++ C +T++G+ + GL+KL LNL C
Sbjct: 264 KTLDLSLCKQITDTSLGRIAQHLRNLETLELGGCCNITNTGLLLIAWGLKKLKHLNLRSC 323
Query: 215 PVTA-------ACLDSLSALGSL--FYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-N 262
+ A +A G+L YL L CQ LSD+ ++ + SLK +NL F
Sbjct: 324 WHISDQGIGHLAGFSRETAEGNLQLEYLGLQDCQRLSDEALGHIAQGLTSLKSINLSFCV 383
Query: 263 EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRH 319
+TD L HL + LE LNL SC I D G+ LT G + L++S ++ L H
Sbjct: 384 SVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGSGINSLDVSFCDKISDQALTH 443
Query: 320 LS-GLTNLESINLSFTGISDGSLRKLA-GLSSLKSLNL-DARQITDTGLAALTS-LTGLT 375
++ GL L S++L+ I+D + K+A L L++LN+ +ITD GL L LT L
Sbjct: 444 IAQGLYRLRSLSLNQCQITDHGMLKIAKALHELENLNIGQCSRITDKGLQTLAEDLTNLK 503
Query: 376 HLDLFG 381
+DL+G
Sbjct: 504 TIDLYG 509
>gi|434405929|ref|YP_007148814.1| Leucine Rich Repeat (LRR)-containing protein [Cylindrospermum
stagnale PCC 7417]
gi|428260184|gb|AFZ26134.1| Leucine Rich Repeat (LRR)-containing protein [Cylindrospermum
stagnale PCC 7417]
Length = 384
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 105/321 (32%), Positives = 162/321 (50%), Gaps = 27/321 (8%)
Query: 72 SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLI 131
S + L + +NL LD F QI D ++ L L+NLT ++ N I +K + L
Sbjct: 84 SDIKPLSNLNNLIYLDLGFN-QIID--IKPLSNLTNLTGINIYYNQII---DIKPLSNLT 137
Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 191
L+ L+L I ++K L L +L + +D+KPLS LTNL +L + +K
Sbjct: 138 KLIYLNL-----IKNEFSDIKPLSNLTNLIYLGLSRNQINDIKPLSNLTNLTTLDLIENK 192
Query: 192 VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI 251
++D I L L KLT L L ++ + LS L +L L L ++SD + S +
Sbjct: 193 ISD--IEPLSNLTKLTYLTLIENKISD--IKPLSNLTNLTALYLWNNEISD--IKHLSNL 246
Query: 252 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 311
L L L N+I+D + L LTNL SL LD I D + L+ L NL L L Q
Sbjct: 247 TKLTYLLLSENKISD--IKPLSNLTNLTSLGLDENQISD--IKPLSNLTNLTYLNLGLNQ 302
Query: 312 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 371
+ S ++ LS LTNL S+ L + IS+ ++ L L++L ++LD QI+D + L+++
Sbjct: 303 I--SDIKVLSNLTNLTSLYLDYNQISN--IQPLFNLNNLTKIDLDYNQISD--IKPLSNM 356
Query: 372 TGLTHLDLFGARITDSGAAYL 392
T L L++ I D ++
Sbjct: 357 TKLEKLEIQNNPIPDKACPFI 377
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 74/270 (27%), Positives = 118/270 (43%), Gaps = 52/270 (19%)
Query: 63 DLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQ 122
+L+G ++ + +I +K SNL L + I+ ++ L L+NL L RN
Sbjct: 116 NLTGINIYYNQIIDIKPLSNLTKLIYLNLIKNEFSDIKPLSNLTNLIYLGLSRNQI---N 172
Query: 123 GMKAFAGLINLVKLDL-----------------ERCTRIHGGLVNLKGLMKLESLN--IK 163
+K + L NL LDL T I + ++K L L +L
Sbjct: 173 DIKPLSNLTNLTTLDLIENKISDIEPLSNLTKLTYLTLIENKISDIKPLSNLTNLTALYL 232
Query: 164 WCNCITD--------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGL 203
W N I+D SD+KPLS LTNL SL + ++++D I L L
Sbjct: 233 WNNEISDIKHLSNLTKLTYLLLSENKISDIKPLSNLTNLTSLGLDENQISD--IKPLSNL 290
Query: 204 QKLTLLNLEGCPVT-AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 262
LT LNL ++ L +L+ L SL YL+ N+ + + +L ++L +N
Sbjct: 291 TNLTYLNLGLNQISDIKVLSNLTNLTSL-YLDYNQIS----NIQPLFNLNNLTKIDLDYN 345
Query: 263 EITDECLVHLKGLTNLESLNLDSCGIGDEG 292
+I+D + L +T LE L + + I D+
Sbjct: 346 QISD--IKPLSNMTKLEKLEIQNNPIPDKA 373
Score = 39.7 bits (91), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 64/132 (48%), Gaps = 15/132 (11%)
Query: 72 SGLIHLKDCSNLQSL--DFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAG 129
S + L + +NL SL D N QISD ++ LSNLT+L++ +K +
Sbjct: 260 SDIKPLSNLTNLTSLGLDEN---QISD-----IKPLSNLTNLTYLNLGLNQISDIKVLSN 311
Query: 130 LINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISC 189
L NL L L+ + + N++ L L +L + SD+KPLS +T L+ L+I
Sbjct: 312 LTNLTSLYLD-----YNQISNIQPLFNLNNLTKIDLDYNQISDIKPLSNMTKLEKLEIQN 366
Query: 190 SKVTDSGIAYLK 201
+ + D ++
Sbjct: 367 NPIPDKACPFIP 378
>gi|290987030|ref|XP_002676226.1| predicted protein [Naegleria gruberi]
gi|284089827|gb|EFC43482.1| predicted protein [Naegleria gruberi]
Length = 298
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 87/317 (27%), Positives = 151/317 (47%), Gaps = 28/317 (8%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDF-NFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQ 122
L S + D GL ++ + NL+ L+ + C + GLE + + LT L R + I +
Sbjct: 7 LEISRIGDMGLKYISELKNLRILNIHDPCFTFTRYGLESISEMPKLTCLKVR-DLKICNE 65
Query: 123 GMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNL 182
G+ + L LD CT + GL +L + +L SL + C + ++ + LT L
Sbjct: 66 GVNWISQSTQLTDLDFTTCT-LDQGLESLCEMKRLTSLWLPSCPKYANK-VELIGQLTQL 123
Query: 183 KSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
SL I + D ++K L +LT L++ + ++S+S L +L LN++ C + D
Sbjct: 124 TSLNICARGINDQDGVHIKELTQLTELDISLNQIVFETIESISQLTNLIILNMSYCNIGD 183
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG ++ L+ LK L NL I D G+++++ L +L
Sbjct: 184 DGACLIGELSQLR---------------ELKVLKNL---------ITDAGVISISQLKHL 219
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L++S+ ++ +G +SGL NL +N+ + I D + LS L+SL+ D I+
Sbjct: 220 IKLDISNNEISKTGAESISGLRNLTYLNIGYNLIGDEGCDFICDLSLLRSLHADKTGISS 279
Query: 363 TGLAALTSLTGLTHLDL 379
G+ ++ +L LT L L
Sbjct: 280 EGIKSIRNLRKLTSLSL 296
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 110/235 (46%), Gaps = 3/235 (1%)
Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQI--SCSKVTDSGIAYLKGLQKLTLLNLEGC 214
LE+L + I D +K +S L NL+ L I C T G+ + + KLT L +
Sbjct: 1 LENLTFLEISRIGDMGLKYISELKNLRILNIHDPCFTFTRYGLESISEMPKLTCLKVRDL 60
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 274
+ ++ +S L L+ C L D G E ++ L L L + +
Sbjct: 61 KICNEGVNWISQSTQLTDLDFTTCTL-DQGLESLCEMKRLTSLWLPSCPKYANKVELIGQ 119
Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 334
LT L SLN+ + GI D+ V++ L L L++S Q+ + +S LTNL +N+S+
Sbjct: 120 LTQLTSLNICARGINDQDGVHIKELTQLTELDISLNQIVFETIESISQLTNLIILNMSYC 179
Query: 335 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 389
I D + LS L+ L + ITD G+ +++ L L LD+ I+ +GA
Sbjct: 180 NIGDDGACLIGELSQLRELKVLKNLITDAGVISISQLKHLIKLDISNNEISKTGA 234
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 75/246 (30%), Positives = 119/246 (48%), Gaps = 14/246 (5%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+ + G+ + + L LDF C D GLE L + LTSL + + A ++
Sbjct: 62 ICNEGVNWISQSTQLTDLDFTTCTL--DQGLESLCEMKRLTSL-WLPSCPKYANKVELIG 118
Query: 129 GLINLVKLDLERCTRIHGGL-----VNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
L L L++ C R G+ V++K L +L L+I N I ++ +S LTNL
Sbjct: 119 QLTQLTSLNI--CAR---GINDQDGVHIKELTQLTELDISL-NQIVFETIESISQLTNLI 172
Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
L +S + D G + L +L L + +T A + S+S L L L+++ ++S
Sbjct: 173 ILNMSYCNIGDDGACLIGELSQLRELKVLKNLITDAGVISISQLKHLIKLDISNNEISKT 232
Query: 244 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 303
G E S + +L LN+G+N I DE + L+ L SL+ D GI EG+ ++ L L
Sbjct: 233 GAESISGLRNLTYLNIGYNLIGDEGCDFICDLSLLRSLHADKTGISSEGIKSIRNLRKLT 292
Query: 304 CLELSD 309
L LS+
Sbjct: 293 SLSLSN 298
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 68/262 (25%), Positives = 122/262 (46%), Gaps = 4/262 (1%)
Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIK-WCNCITDSDMKPLSGLTNLKSLQISCS 190
NL L++ R + GL + L L LNI C T ++ +S + L L++
Sbjct: 3 NLTFLEISRIGDM--GLKYISELKNLRILNIHDPCFTFTRYGLESISEMPKLTCLKVRDL 60
Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 250
K+ + G+ ++ +LT L+ C + L+SL + L L L C + E +
Sbjct: 61 KICNEGVNWISQSTQLTDLDFTTCTLDQG-LESLCEMKRLTSLWLPSCPKYANKVELIGQ 119
Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 310
+ L LN+ I D+ VH+K LT L L++ I E + +++ L NL L +S
Sbjct: 120 LTQLTSLNICARGINDQDGVHIKELTQLTELDISLNQIVFETIESISQLTNLIILNMSYC 179
Query: 311 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 370
+G G + L+ L + + I+D + ++ L L L++ +I+ TG +++
Sbjct: 180 NIGDDGACLIGELSQLRELKVLKNLITDAGVISISQLKHLIKLDISNNEISKTGAESISG 239
Query: 371 LTGLTHLDLFGARITDSGAAYL 392
L LT+L++ I D G ++
Sbjct: 240 LRNLTYLNIGYNLIGDEGCDFI 261
>gi|410907724|ref|XP_003967341.1| PREDICTED: F-box/LRR-repeat protein 14-like [Takifugu rubripes]
Length = 403
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 108/314 (34%), Positives = 160/314 (50%), Gaps = 36/314 (11%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFA-----GLINLVKLDLERCTRIHGGLVNLKGLMKL 157
RG+ + LS RR+ + QGM G NL L G ++ + L
Sbjct: 71 RGIKKVQILSLRRSLSYVIQGMPHIESLNLCGCFNLTDSGL--------GHAFVQDIPSL 122
Query: 158 ESLNIKWCNCITDSDM-KPLSGLTNLKSLQI-SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LN+ C ITDS + K L NL+ L++ CS +T++G+ + GL +L LNL C
Sbjct: 123 RVLNLSLCKQITDSSLGKIAEYLKNLEVLELGGCSNITNTGLLLVAWGLHRLKSLNLRSC 182
Query: 215 -PVTAACLDSLSALG--------SLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-N 262
V+ + LS + SL L L CQ L+D + SK + LKVLNL F
Sbjct: 183 RHVSDVGIGHLSGMTRSAAEGCLSLEKLTLQDCQKLTDLSLKHVSKGLNKLKVLNLSFCG 242
Query: 263 EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRH 319
I+D ++HL +T+L SLNL SC I D G+++L G L L++S ++G L +
Sbjct: 243 GISDVGMIHLSHMTHLCSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKIGDQSLAY 302
Query: 320 LS-GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALT-SLTGLT 375
++ GL L+S++L ISD + R + + LK+LN+ +ITD GL + LT LT
Sbjct: 303 IAQGLYQLKSLSLCSCHISDDGINRMVRQMHELKTLNIGQCGRITDKGLELIADHLTQLT 362
Query: 376 HLDLFG-ARITDSG 388
+DL+G +IT G
Sbjct: 363 GIDLYGCTKITKRG 376
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 98/307 (31%), Positives = 163/307 (53%), Gaps = 26/307 (8%)
Query: 81 SNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAG-LINLVKLD 137
+++SL+ C ++D GL H ++ + +L L+ IT + A L NL L+
Sbjct: 93 PHIESLNLCGCFNLTDSGLGHAFVQDIPSLRVLNLSLCKQITDSSLGKIAEYLKNLEVLE 152
Query: 138 LERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT--------NLKSLQI 187
L C+ I G L+ GL +L+SLN++ C ++D + LSG+T +L+ L +
Sbjct: 153 LGGCSNITNTGLLLVAWGLHRLKSLNLRSCRHVSDVGIGHLSGMTRSAAEGCLSLEKLTL 212
Query: 188 S-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDD 243
C K+TD + ++ KGL KL +LNL C ++ + LS + L LNL C +SD
Sbjct: 213 QDCQKLTDLSLKHVSKGLNKLKVLNLSFCGGISDVGMIHLSHMTHLCSLNLRSCDNISDT 272
Query: 244 GCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGLVNLT-G 298
G + +GSL++ L++ F ++I D+ L ++ +GL L+SL+L SC I D+G+ +
Sbjct: 273 GIMHLA-MGSLRLSGLDVSFCDKIGDQSLAYIAQGLYQLKSLSLCSCHISDDGINRMVRQ 331
Query: 299 LCNLKCLELSDT-QVGSSGLRHLS-GLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNL 355
+ LK L + ++ GL ++ LT L I+L T I+ L ++ L LK LNL
Sbjct: 332 MHELKTLNIGQCGRITDKGLELIADHLTQLTGIDLYGCTKITKRGLERITQLPCLKVLNL 391
Query: 356 DARQITD 362
Q+T+
Sbjct: 392 GLWQMTE 398
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 104/204 (50%), Gaps = 29/204 (14%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ K + L+ L+ +FC ISD G+ HL +++L SL+ R + I+ G+
Sbjct: 218 LTDLSLKHVSKGLNKLKVLNLSFCGGISDVGMIHLSHMTHLCSLNLRSCDNISDTGIMHL 277
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C +I + +GL +L+SL++ C+ D + + + LK+
Sbjct: 278 AMGSLRLSGLDVSFCDKIGDQSLAYIAQGLYQLKSLSLCSCHISDDGINRMVRQMHELKT 337
Query: 185 LQI-SCSKVTDSGIAYLK-GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
L I C ++TD G+ + L +LT ++L GC +++
Sbjct: 338 LNIGQCGRITDKGLELIADHLTQLTGIDLYGCT-----------------------KITK 374
Query: 243 DGCEKFSKIGSLKVLNLGFNEITD 266
G E+ +++ LKVLNLG ++T+
Sbjct: 375 RGLERITQLPCLKVLNLGLWQMTE 398
>gi|195487977|ref|XP_002092120.1| GE11843 [Drosophila yakuba]
gi|194178221|gb|EDW91832.1| GE11843 [Drosophila yakuba]
Length = 533
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 121/374 (32%), Positives = 188/374 (50%), Gaps = 68/374 (18%)
Query: 7 SQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG 66
S +FN LV R + +V + + R +L+DL LG +L S++LSG
Sbjct: 197 SPSLFNCLV-KRGIKKVQILSLRR-SLKDLVLGV----------------PALTSLNLSG 238
Query: 67 S-DVTDSGLIHL--KDCSNLQSLDFNFCIQISDGGL----EHLRGLSNLTSLSFRRNNAI 119
+V D L H D NL++LD + C QI+D L +HLR NL +L I
Sbjct: 239 CFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLR---NLETLELGGCCNI 295
Query: 120 TAQGMKAFA-GLINLVKLDLERCTRIH-GGLVNLKGL--------MKLESLNIKWCNCIT 169
T G+ A GL L L+L C I G+ +L G ++LE L ++ C ++
Sbjct: 296 TNTGLLLIAWGLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEYLGLQDCQRLS 355
Query: 170 DSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
D + ++ GLT+LKS+ +S C VTDSG+ +L + KL LNL C D++S +
Sbjct: 356 DEALGHIAQGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSC-------DNISDI 408
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHL-KGLTNLESLNLDS 285
G + L++ G S I SL V F ++I+D+ L H+ +GL L SL+L+
Sbjct: 409 GMAY--------LTEGG----SGINSLDV---SFCDKISDQALTHIAQGLYRLRSLSLNQ 453
Query: 286 CGIGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLS-GLTNLESINL-SFTGISDGSL 341
C I D G++ + L L+ L + +++ GL+ L+ LTNL++I+L T +S +
Sbjct: 454 CQITDHGMLKIAKALHELENLNIGQCSRITDKGLQTLAEDLTNLKTIDLYGCTQLSSKGI 513
Query: 342 RKLAGLSSLKSLNL 355
+ L L+ LNL
Sbjct: 514 DIIMKLPKLQKLNL 527
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 98/306 (32%), Positives = 155/306 (50%), Gaps = 35/306 (11%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAF-----AGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
RG+ + LS RR+ G+ A +G N+ ++L + L L
Sbjct: 207 RGIKKVQILSLRRSLKDLVLGVPALTSLNLSGCFNVADMNLGHAFSV--------DLPNL 258
Query: 158 ESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLK-GLQKLTLLNLEGC 214
++L++ C ITD+ + ++ L NL++L++ C +T++G+ + GL+KL LNL C
Sbjct: 259 KTLDLSLCKQITDTSLGRIAQHLRNLETLELGGCCNITNTGLLLIAWGLKKLKHLNLRSC 318
Query: 215 PVTA-------ACLDSLSALGSL--FYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-N 262
+ A +A G+L YL L CQ LSD+ ++ + SLK +NL F
Sbjct: 319 WHISDQGIGHLAGFSRETAEGNLQLEYLGLQDCQRLSDEALGHIAQGLTSLKSINLSFCV 378
Query: 263 EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRH 319
+TD L HL + LE LNL SC I D G+ LT G + L++S ++ L H
Sbjct: 379 SVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGSGINSLDVSFCDKISDQALTH 438
Query: 320 LS-GLTNLESINLSFTGISDGSLRKLA-GLSSLKSLNL-DARQITDTGLAALTS-LTGLT 375
++ GL L S++L+ I+D + K+A L L++LN+ +ITD GL L LT L
Sbjct: 439 IAQGLYRLRSLSLNQCQITDHGMLKIAKALHELENLNIGQCSRITDKGLQTLAEDLTNLK 498
Query: 376 HLDLFG 381
+DL+G
Sbjct: 499 TIDLYG 504
>gi|374850803|dbj|BAL53782.1| hypothetical conserved protein, partial [uncultured planctomycete]
Length = 351
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 80/255 (31%), Positives = 129/255 (50%), Gaps = 6/255 (2%)
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
+T QG + A L L +L L L L L LE+L++ W + + +K +
Sbjct: 100 LTPQGWRKIAELRALRELYLADSNVDDEDLQYLANLGSLETLDLAW-TPMKGTGLKHVGQ 158
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
+ NL+ L ++ +K+ D IA + L KL L+L G VT ++ +S L +L L RC
Sbjct: 159 IRNLRVLLLTHTKIADEHIAQIVPLTKLEKLDLGGTLVTDKGMEFVSRLANLKDL---RC 215
Query: 239 Q--LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
L+DD + +++ L+ L L + +T + + LK L+ L SL+L I D L +
Sbjct: 216 PESLTDDATKLLARLVQLRTLCLSSSCVTSQGVESLKTLSELRSLDLSRTKIDDRALDQI 275
Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
T L L+ L LS+T + + + NL+S+ L T ISD L+++ + +L+ LNL
Sbjct: 276 TVLSKLEHLLLSETNITDAVAPVIGRFMNLKSLFLDGTKISDSVLQEVGKVHTLERLNLS 335
Query: 357 ARQITDTGLAALTSL 371
+T GL LT L
Sbjct: 336 KTAVTGEGLQHLTPL 350
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 79/277 (28%), Positives = 124/277 (44%), Gaps = 35/277 (12%)
Query: 24 SLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNL 83
L A R+ L D V+D+ + +A+ GS L ++DL+ + + +GL H+ NL
Sbjct: 110 ELRALRELYLAD------SNVDDEDLQYLANLGS-LETLDLAWTPMKGTGLKHVGQIRNL 162
Query: 84 QSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTR 143
+ L +I+D + + L+ L L +T +GM+ + L NL L RC
Sbjct: 163 RVLLLTHT-KIADEHIAQIVPLTKLEKLDL-GGTLVTDKGMEFVSRLANLKDL---RCP- 216
Query: 144 IHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGL 203
ESL TD K L+ L L++L +S S VT G+ LK L
Sbjct: 217 --------------ESL--------TDDATKLLARLVQLRTLCLSSSCVTSQGVESLKTL 254
Query: 204 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE 263
+L L+L + LD ++ L L +L L+ ++D + +LK L L +
Sbjct: 255 SELRSLDLSRTKIDDRALDQITVLSKLEHLLLSETNITDAVAPVIGRFMNLKSLFLDGTK 314
Query: 264 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
I+D L + + LE LNL + EGL +LT L
Sbjct: 315 ISDSVLQEVGKVHTLERLNLSKTAVTGEGLQHLTPLA 351
>gi|449464060|ref|XP_004149747.1| PREDICTED: uncharacterized protein LOC101203036 [Cucumis sativus]
gi|449505065|ref|XP_004162366.1| PREDICTED: uncharacterized protein LOC101225004 [Cucumis sativus]
Length = 586
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 106/412 (25%), Positives = 173/412 (41%), Gaps = 79/412 (19%)
Query: 43 GVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEH 101
V+ +WM + S L S+++S ++ SG+ + + L+ L+ + C++++D G+ H
Sbjct: 73 AVDSEWMAYLGS-FRYLQSLNVSNCHRLSSSGVWTISGMTTLRELNVSRCLKVTDAGIRH 131
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL- 160
L + L L ITA G+ + L LV LDL L +L+ L KL+ L
Sbjct: 132 LLSIPTLEKLCIAET-GITAHGVTLLSSLKTLVFLDLGGLPVTDQALSSLQVLTKLQYLD 190
Query: 161 -----------------------NIKWC-----------------NCITDSDMKPLSGLT 180
NI W NCI DS +K L
Sbjct: 191 LWGSKISNSGSDVLQMFPKLSFLNIAWTSVTKFPNLPHLECLNMSNCIIDSTLKGLGA-- 248
Query: 181 NLKSLQISCSKVTDSGIAY--------LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
++ K+ SG + + L L+ + C LS + ++ +
Sbjct: 249 -----KVPPRKLIASGATFSNETEDLGFVAMDALYYLDFSNASLHRFCF--LSRMKAVEH 301
Query: 233 LNLNRCQLSDDGCEKFSKIG-SLKVLNLGFNEITDECLVHLKG-LTNLESLNLDSCGIGD 290
L+L+ + D E + +G +LK LNL ++ + L G ++NLE+L+L + D
Sbjct: 302 LDLSSTTIGDSSVELIASVGENLKYLNLSCTAVSSSGIGSLAGKVSNLETLSLSHTMVDD 361
Query: 291 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG-----------LTNL---ESINLSFTGI 336
L + + +LKC++LS+T + G HLS L NL E +NL T +
Sbjct: 362 VALSYMNMMPSLKCIDLSETDI--KGYIHLSAPETVKVFSLTELQNLDCLEMLNLEHTHV 419
Query: 337 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 388
D SLR L+ L L L + TDT L+ L+ L L L + A +T+
Sbjct: 420 DDESLRPLSRFRKLSHLMLRSPSFTDTVLSYLSILPNLKTLSIRDAVLTNQA 471
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 82/313 (26%), Positives = 138/313 (44%), Gaps = 54/313 (17%)
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMK 174
NA+ ++ M L L++ C R+ G+ + G+ L LN+ C +TD+ ++
Sbjct: 71 ENAVDSEWMAYLGSFRYLQSLNVSNCHRLSSSGVWTISGMTTLRELNVSRCLKVTDAGIR 130
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
L + L+ L I+ + +T G+ L L+ L L+L G PVT L SL L L YL+
Sbjct: 131 HLLSIPTLEKLCIAETGITAHGVTLLSSLKTLVFLDLGGLPVTDQALSSLQVLTKLQYLD 190
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-------G 287
L ++S+ G + L LN+ + +T L +LE LN+ +C G
Sbjct: 191 LWGSKISNSGSDVLQMFPKLSFLNIAWTSVTK-----FPNLPHLECLNMSNCIIDSTLKG 245
Query: 288 IG--------------------DEGLVNLTGLCNL-------------------KCLELS 308
+G D G V + L L + L+LS
Sbjct: 246 LGAKVPPRKLIASGATFSNETEDLGFVAMDALYYLDFSNASLHRFCFLSRMKAVEHLDLS 305
Query: 309 DTQVGSSGLRHLSGL-TNLESINLSFTGISDGSLRKLAG-LSSLKSLNLDARQITDTGLA 366
T +G S + ++ + NL+ +NLS T +S + LAG +S+L++L+L + D L+
Sbjct: 306 STTIGDSSVELIASVGENLKYLNLSCTAVSSSGIGSLAGKVSNLETLSLSHTMVDDVALS 365
Query: 367 ALTSLTGLTHLDL 379
+ + L +DL
Sbjct: 366 YMNMMPSLKCIDL 378
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 95/394 (24%), Positives = 168/394 (42%), Gaps = 73/394 (18%)
Query: 13 ELVYSRCLTEVSLEAFRD----CALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSD 68
EL SRCL +V+ R L+ LC+ + G+ + +++S +L+ +DL G
Sbjct: 115 ELNVSRCL-KVTDAGIRHLLSIPTLEKLCIAET-GITAHGVTLLSSL-KTLVFLDLGGLP 171
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
VTD L L+ + LQ LD + +IS+ G + L+ L+ L+ I + F
Sbjct: 172 VTDQALSSLQVLTKLQYLDL-WGSKISNSGSDVLQMFPKLSFLN------IAWTSVTKFP 224
Query: 129 GLINLVKLDLERC---TRIHG------------------------GLVNLKGLMKLESLN 161
L +L L++ C + + G G V + L L+ N
Sbjct: 225 NLPHLECLNMSNCIIDSTLKGLGAKVPPRKLIASGATFSNETEDLGFVAMDALYYLDFSN 284
Query: 162 I---KWC---------------NCITDSDMKPLSGL-TNLKSLQISCSKVTDSGIAYLKG 202
++C I DS ++ ++ + NLK L +SC+ V+ SGI L G
Sbjct: 285 ASLHRFCFLSRMKAVEHLDLSSTTIGDSSVELIASVGENLKYLNLSCTAVSSSGIGSLAG 344
Query: 203 -LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 261
+ L L+L V L ++ + SL ++L+ + G S ++KV +L
Sbjct: 345 KVSNLETLSLSHTMVDDVALSYMNMMPSLKCIDLSETDIK--GYIHLSAPETVKVFSL-- 400
Query: 262 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 321
L+ L LE LNL+ + DE L L+ L L L + L +LS
Sbjct: 401 --------TELQNLDCLEMLNLEHTHVDDESLRPLSRFRKLSHLMLRSPSFTDTVLSYLS 452
Query: 322 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355
L NL+++++ +++ + +++L+ ++L
Sbjct: 453 ILPNLKTLSIRDAVLTNQAFDTFKPVATLQKIDL 486
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 97/209 (46%), Gaps = 17/209 (8%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEHL 102
+ D +++IAS G +L ++LS + V+ SG+ L SNL++L + + + D L ++
Sbjct: 309 IGDSSVELIASVGENLKYLNLSCTAVSSSGIGSLAGKVSNLETLSLSHTM-VDDVALSYM 367
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
+ +L + + G I+L + + L L+ L LE LN+
Sbjct: 368 NMMPSLKCIDLSETD---------IKGYIHLSAPETVKV----FSLTELQNLDCLEMLNL 414
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
+ + + D ++PLS L L + TD+ ++YL L L L++ +T D
Sbjct: 415 EHTH-VDDESLRPLSRFRKLSHLMLRSPSFTDTVLSYLSILPNLKTLSIRDAVLTNQAFD 473
Query: 223 SLSALGSLFYLNLNRCQ-LSDDGCEKFSK 250
+ + +L ++L C L++DG F +
Sbjct: 474 TFKPVATLQKIDLRGCWLLTEDGLSVFHR 502
>gi|320169700|gb|EFW46599.1| protein tyrosine kinase [Capsaspora owczarzaki ATCC 30864]
Length = 1026
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 93/305 (30%), Positives = 132/305 (43%), Gaps = 5/305 (1%)
Query: 85 SLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI 144
SL FN I+ GL++LT ++ + NN IT F GL ++ + DL
Sbjct: 69 SLQFN---HITSLATNAFTGLTSLTQVTLQNNN-ITNIVATTFTGLSSVTQTDLSYNKLT 124
Query: 145 HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQ 204
GL L L++ N IT S LT L L ++ + + + GL
Sbjct: 125 SLSANAFTGLTALAQLDLS-MNQITSIHATAFSDLTALTQLSLTNNIIRTIPSSAFTGLT 183
Query: 205 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 264
L LNL G TA ++ + L +L YL+L C ++ F+ + +L L L N+I
Sbjct: 184 ALNTLNLGGNLFTAIPANAFTGLSALNYLSLFACLITVISANAFTGLTALTFLTLQSNQI 243
Query: 265 TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT 324
+ GLT L+ L L S I T L L L+LS + S +GL+
Sbjct: 244 LNIPANAFAGLTALQFLYLSSAQITSLSANAFTDLSALTQLDLSYNMITSLSANTFTGLS 303
Query: 325 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 384
L ++LS+ I+ S GLS+L L L QIT A LT LT L LF +I
Sbjct: 304 ALTRLDLSYNMITSLSANTFTGLSALTQLYLFENQITSIPADAFAGLTALTQLFLFENQI 363
Query: 385 TDSGA 389
T A
Sbjct: 364 TSIPA 368
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 94/314 (29%), Positives = 132/314 (42%), Gaps = 33/314 (10%)
Query: 92 IQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLV 149
I I L L L LS+ + I+AQ AF GL L LDL R T+I G L
Sbjct: 4 ISIPANAFAGLTALQYL-ELSYNQLTGISAQ---AFTGLTALNYLDLSNNRITKIPGSL- 58
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS--------------CSKVTDS 195
GL L +L++++ N IT +GLT+L + + S VT +
Sbjct: 59 -FTGLTMLTTLSLQF-NHITSLATNAFTGLTSLTQVTLQNNNITNIVATTFTGLSSVTQT 116
Query: 196 GIAYLK----------GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 245
++Y K GL L L+L +T+ + S L +L L+L +
Sbjct: 117 DLSYNKLTSLSANAFTGLTALAQLDLSMNQITSIHATAFSDLTALTQLSLTNNIIRTIPS 176
Query: 246 EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 305
F+ + +L LNLG N T GL+ L L+L +C I TGL L L
Sbjct: 177 SAFTGLTALNTLNLGGNLFTAIPANAFTGLSALNYLSLFACLITVISANAFTGLTALTFL 236
Query: 306 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 365
L Q+ + +GLT L+ + LS I+ S LS+L L+L IT
Sbjct: 237 TLQSNQILNIPANAFAGLTALQFLYLSSAQITSLSANAFTDLSALTQLDLSYNMITSLSA 296
Query: 366 AALTSLTGLTHLDL 379
T L+ LT LDL
Sbjct: 297 NTFTGLSALTRLDL 310
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 86/307 (28%), Positives = 126/307 (41%), Gaps = 30/307 (9%)
Query: 104 GLSNLTS--LSFRRNNAITAQGMKAFAGLINLVKLDLE--RCTRIHG------------G 147
GLS++T LS+ N +T+ AF GL L +LDL + T IH
Sbjct: 109 GLSSVTQTDLSY---NKLTSLSANAFTGLTALAQLDLSMNQITSIHATAFSDLTALTQLS 165
Query: 148 LVN----------LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGI 197
L N GL L +LN+ N T +GL+ L L + +T
Sbjct: 166 LTNNIIRTIPSSAFTGLTALNTLNLG-GNLFTAIPANAFTGLSALNYLSLFACLITVISA 224
Query: 198 AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 257
GL LT L L+ + ++ + L +L +L L+ Q++ F+ + +L L
Sbjct: 225 NAFTGLTALTFLTLQSNQILNIPANAFAGLTALQFLYLSSAQITSLSANAFTDLSALTQL 284
Query: 258 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 317
+L +N IT GL+ L L+L I TGL L L L + Q+ S
Sbjct: 285 DLSYNMITSLSANTFTGLSALTRLDLSYNMITSLSANTFTGLSALTQLYLFENQITSIPA 344
Query: 318 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 377
+GLT L + L I+ AGL++L L L +IT A LT LT L
Sbjct: 345 DAFAGLTALTQLFLFENQITSIPADAFAGLTALTQLELSHTRITSISANAFRGLTALTAL 404
Query: 378 DLFGARI 384
L ++
Sbjct: 405 YLHSVQL 411
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 94/340 (27%), Positives = 141/340 (41%), Gaps = 10/340 (2%)
Query: 45 NDKWMDVIASQGSSLLSV---DLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEH 101
N+ +++A+ + L SV DLS + +T + L LD + QI+
Sbjct: 96 NNNITNIVATTFTGLSSVTQTDLSYNKLTSLSANAFTGLTALAQLDLSMN-QITSIHATA 154
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL--ERCTRIHGGLVNLKGLMKLES 159
L+ LT LS NN I AF GL L L+L T I GL L
Sbjct: 155 FSDLTALTQLSLT-NNIIRTIPSSAFTGLTALNTLNLGGNLFTAIPANA--FTGLSALNY 211
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
L++ C IT +GLT L L + +++ + GL L L L +T+
Sbjct: 212 LSLFAC-LITVISANAFTGLTALTFLTLQSNQILNIPANAFAGLTALQFLYLSSAQITSL 270
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
++ + L +L L+L+ ++ F+ + +L L+L +N IT GL+ L
Sbjct: 271 SANAFTDLSALTQLDLSYNMITSLSANTFTGLSALTRLDLSYNMITSLSANTFTGLSALT 330
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L I GL L L L + Q+ S +GLT L + LS T I+
Sbjct: 331 QLYLFENQITSIPADAFAGLTALTQLFLFENQITSIPADAFAGLTALTQLELSHTRITSI 390
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
S GL++L +L L + Q+ A T L L L L
Sbjct: 391 SANAFRGLTALTALYLHSVQLNSIPANAFTDLPTLQRLAL 430
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 81/305 (26%), Positives = 124/305 (40%), Gaps = 3/305 (0%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L +DLS + +T D + L L I I GL+ L +L+
Sbjct: 135 TALAQLDLSMNQITSIHATAFSDLTALTQLSLTNNI-IRTIPSSAFTGLTALNTLNLG-G 192
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N TA AF GL L L L C GL L L ++ N I +
Sbjct: 193 NLFTAIPANAFTGLSALNYLSLFACLITVISANAFTGLTALTFLTLQ-SNQILNIPANAF 251
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+GLT L+ L +S +++T L LT L+L +T+ ++ + L +L L+L+
Sbjct: 252 AGLTALQFLYLSSAQITSLSANAFTDLSALTQLDLSYNMITSLSANTFTGLSALTRLDLS 311
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
++ F+ + +L L L N+IT GLT L L L I
Sbjct: 312 YNMITSLSANTFTGLSALTQLYLFENQITSIPADAFAGLTALTQLFLFENQITSIPADAF 371
Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
GL L LELS T++ S GLT L ++ L ++ L +L+ L L+
Sbjct: 372 AGLTALTQLELSHTRITSISANAFRGLTALTALYLHSVQLNSIPANAFTDLPTLQRLALN 431
Query: 357 ARQIT 361
+T
Sbjct: 432 DNPLT 436
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 91/222 (40%), Gaps = 2/222 (0%)
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 163
GL+ LT L+ + N + AFAGL L L L L L L++
Sbjct: 229 GLTALTFLTLQSNQILNIPA-NAFAGLTALQFLYLSSAQITSLSANAFTDLSALTQLDLS 287
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
+ N IT +GL+ L L +S + +T GL LT L L +T+ D+
Sbjct: 288 Y-NMITSLSANTFTGLSALTRLDLSYNMITSLSANTFTGLSALTQLYLFENQITSIPADA 346
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
+ L +L L L Q++ + F+ + +L L L IT +GLT L +L L
Sbjct: 347 FAGLTALTQLFLFENQITSIPADAFAGLTALTQLELSHTRITSISANAFRGLTALTALYL 406
Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 325
S + T L L+ L L+D + + GL N
Sbjct: 407 HSVQLNSIPANAFTDLPTLQRLALNDNPLTTLPPGLFKGLPN 448
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 64/147 (43%)
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
QL F+ + +L+ L L +N++T GLT L L+L + I TG
Sbjct: 2 QLISIPANAFAGLTALQYLELSYNQLTGISAQAFTGLTALNYLDLSNNRITKIPGSLFTG 61
Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
L L L L + S +GLT+L + L I++ GLSS+ +L
Sbjct: 62 LTMLTTLSLQFNHITSLATNAFTGLTSLTQVTLQNNNITNIVATTFTGLSSVTQTDLSYN 121
Query: 359 QITDTGLAALTSLTGLTHLDLFGARIT 385
++T A T LT L LDL +IT
Sbjct: 122 KLTSLSANAFTGLTALAQLDLSMNQIT 148
>gi|290996590|ref|XP_002680865.1| predicted protein [Naegleria gruberi]
gi|284094487|gb|EFC48121.1| predicted protein [Naegleria gruberi]
Length = 304
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 92/284 (32%), Positives = 133/284 (46%), Gaps = 9/284 (3%)
Query: 99 LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL---ERCTRIHGGLVNLKGLM 155
+++ L ++T LSF + + K F+ L NL LDL E T H ++L M
Sbjct: 2 IDYFPTLESVTDLSFNHH-QVRITNTKIFSKLKNLTALDLSYNELVTDAHVKEISLIPSM 60
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215
+ LNI +C I + +S + L+SL + ++ +AYLK L L LN P
Sbjct: 61 R--RLNI-FCTDIGKQSIVYISEMKLLESLILGELRLEAESVAYLKKLTNLKELNC--SP 115
Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 275
+ LS + SL L LN ++ E SK+ SL L L + I + L +
Sbjct: 116 DSYGTSAHLSEMKSLNSLILNVKYNKEEDIENISKLTSLNHLKLWNSNINSKGAEFLSNI 175
Query: 276 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 335
++ SLNL I D GLVN+ L NL L LS + SG+ +L L L +NL+
Sbjct: 176 SSFTSLNLSGNVIRDAGLVNIGKLANLTFLNLSYNGLSDSGITNLGNLRKLTDLNLNGNN 235
Query: 336 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
I D + ++ S LK L L QIT G L++L L LDL
Sbjct: 236 IEDQGAKIISKFSHLKYLQLRNNQITKNGANYLSNLNSLYSLDL 279
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 75/287 (26%), Positives = 132/287 (45%), Gaps = 42/287 (14%)
Query: 52 IASQGSSLLSVDLSGSD-VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTS 110
I S+ +L ++DLS ++ VTD+ + + +++ L+ FC I + ++ + L S
Sbjct: 28 IFSKLKNLTALDLSYNELVTDAHVKEISLIPSMRRLNI-FCTDIGKQSIVYISEMKLLES 86
Query: 111 L---SFRRNNAITAQGMKAFAGLINLVKLDLERCTR-IHGGLVNLKGLMKLESL--NIKW 164
L R + A+ + L NL +L+ C+ +G +L + L SL N+K+
Sbjct: 87 LILGELR----LEAESVAYLKKLTNLKELN---CSPDSYGTSAHLSEMKSLNSLILNVKY 139
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
+ D++ +S LT+L L++ S + G +L + T LNL G + A L ++
Sbjct: 140 N---KEEDIENISKLTSLNHLKLWNSNINSKGAEFLSNISSFTSLNLSGNVIRDAGLVNI 196
Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284
L +L +LNL+ LSD G + L LNL N
Sbjct: 197 GKLANLTFLNLSYNGLSDSGITNLGNLRKLTDLNLNGN---------------------- 234
Query: 285 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 331
I D+G ++ +LK L+L + Q+ +G +LS L +L S++L
Sbjct: 235 --NIEDQGAKIISKFSHLKYLQLRNNQITKNGANYLSNLNSLYSLDL 279
>gi|348505743|ref|XP_003440420.1| PREDICTED: F-box/LRR-repeat protein 14-like [Oreochromis niloticus]
Length = 403
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 106/314 (33%), Positives = 161/314 (51%), Gaps = 36/314 (11%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFA-----GLINLVKLDLERCTRIHGGLVNLKGLMKL 157
RG+ + LS RR+ + QGM G NL L G ++ + L
Sbjct: 71 RGIKKVQILSLRRSLSYVIQGMPHIESLNLCGCFNLTDNGL--------GHAFVQDISSL 122
Query: 158 ESLNIKWCNCITDSDMKPLSG-LTNLKSLQI-SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LN+ C ITDS + ++ L NL+ L++ CS +T++G+ + GL +L LNL C
Sbjct: 123 RVLNLSLCKQITDSSLGRIAQYLKNLEVLELGGCSNITNTGLLLIAWGLHRLKSLNLRSC 182
Query: 215 -PVTAACLDSLSALG--------SLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-N 262
V+ + LS + +L L L CQ L+D + SK + LKVLNL F
Sbjct: 183 RHVSDVGIGHLSGMTRSAAEGCLTLEKLTLQDCQKLTDLSLKHISKGLNKLKVLNLSFCG 242
Query: 263 EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRH 319
I+D ++HL +T+L SLNL SC I D G+++L G L L++S ++G L +
Sbjct: 243 GISDAGMIHLSHMTHLCSLNLRSCDNISDTGIMHLAMGSLRLTGLDVSFCDKIGDQSLAY 302
Query: 320 LS-GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALT-SLTGLT 375
++ GL L+S++L ISD + R + + LK+LN+ +ITD GL + LT LT
Sbjct: 303 IAQGLYQLKSLSLCSCHISDDGINRMVRQMHELKTLNIGQCVRITDKGLELIADHLTQLT 362
Query: 376 HLDLFG-ARITDSG 388
+DL+G +IT G
Sbjct: 363 GIDLYGCTKITKRG 376
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 100/308 (32%), Positives = 165/308 (53%), Gaps = 26/308 (8%)
Query: 81 SNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAG-LINLVKLD 137
+++SL+ C ++D GL H ++ +S+L L+ IT + A L NL L+
Sbjct: 93 PHIESLNLCGCFNLTDNGLGHAFVQDISSLRVLNLSLCKQITDSSLGRIAQYLKNLEVLE 152
Query: 138 LERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LKSLQI 187
L C+ I G L+ GL +L+SLN++ C ++D + LSG+T L+ L +
Sbjct: 153 LGGCSNITNTGLLLIAWGLHRLKSLNLRSCRHVSDVGIGHLSGMTRSAAEGCLTLEKLTL 212
Query: 188 S-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDD 243
C K+TD + ++ KGL KL +LNL C ++ A + LS + L LNL C +SD
Sbjct: 213 QDCQKLTDLSLKHISKGLNKLKVLNLSFCGGISDAGMIHLSHMTHLCSLNLRSCDNISDT 272
Query: 244 GCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGLVNLT-G 298
G + +GSL++ L++ F ++I D+ L ++ +GL L+SL+L SC I D+G+ +
Sbjct: 273 GIMHLA-MGSLRLTGLDVSFCDKIGDQSLAYIAQGLYQLKSLSLCSCHISDDGINRMVRQ 331
Query: 299 LCNLKCLELSD-TQVGSSGLRHLS-GLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNL 355
+ LK L + ++ GL ++ LT L I+L T I+ L ++ L LK LNL
Sbjct: 332 MHELKTLNIGQCVRITDKGLELIADHLTQLTGIDLYGCTKITKRGLERITQLPCLKVLNL 391
Query: 356 DARQITDT 363
Q+T++
Sbjct: 392 GLWQMTES 399
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 104/204 (50%), Gaps = 29/204 (14%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ K + L+ L+ +FC ISD G+ HL +++L SL+ R + I+ G+
Sbjct: 218 LTDLSLKHISKGLNKLKVLNLSFCGGISDAGMIHLSHMTHLCSLNLRSCDNISDTGIMHL 277
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C +I + +GL +L+SL++ C+ D + + + LK+
Sbjct: 278 AMGSLRLTGLDVSFCDKIGDQSLAYIAQGLYQLKSLSLCSCHISDDGINRMVRQMHELKT 337
Query: 185 LQI-SCSKVTDSGIAYLK-GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
L I C ++TD G+ + L +LT ++L GC +++
Sbjct: 338 LNIGQCVRITDKGLELIADHLTQLTGIDLYGCT-----------------------KITK 374
Query: 243 DGCEKFSKIGSLKVLNLGFNEITD 266
G E+ +++ LKVLNLG ++T+
Sbjct: 375 RGLERITQLPCLKVLNLGLWQMTE 398
>gi|320167107|gb|EFW44006.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 624
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 72/221 (32%), Positives = 105/221 (47%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
N IT +GLT L L + +++T GL LT L +T+ D+ +
Sbjct: 68 NSITSISANAFTGLTALTYLSLQYNQITGIPAGTFTGLTALTALFFAYNQITSIPADTFT 127
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
L SL YL+L Q++ F+ + +L L+LG N+IT GLT L +L+L +
Sbjct: 128 GLTSLTYLSLQNNQVTSISGTAFTGLTALTSLSLGPNQITSIPADTFTGLTALTTLSLQN 187
Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 345
I TGL L CL Q+ S +G+T+L ++L I+ S A
Sbjct: 188 NQITSISGTAFTGLTALTCLYFGSNQITSIPAGAFTGMTSLTYLSLYLNKITSISANAFA 247
Query: 346 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
GL++L L+L +IT + A T LTGLT L L G +IT
Sbjct: 248 GLTALTYLSLFNNKITSIPVGAFTGLTGLTDLYLDGNQITS 288
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 74/244 (30%), Positives = 110/244 (45%), Gaps = 11/244 (4%)
Query: 85 SLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCT 142
SL +N QI+ GL+ LT+L F N IT+ F GL +L L L+ + T
Sbjct: 88 SLQYN---QITGIPAGTFTGLTALTALFFAYNQ-ITSIPADTFTGLTSLTYLSLQNNQVT 143
Query: 143 RIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAYLK 201
I G GL L SL++ N IT +GLT L +L + +++T SG A+
Sbjct: 144 SISG--TAFTGLTALTSLSLGP-NQITSIPADTFTGLTALTTLSLQNNQITSISGTAF-T 199
Query: 202 GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 261
GL LT L +T+ + + + SL YL+L +++ F+ + +L L+L
Sbjct: 200 GLTALTCLYFGSNQITSIPAGAFTGMTSLTYLSLYLNKITSISANAFAGLTALTYLSLFN 259
Query: 262 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 321
N+IT + GLT L L LD I + T L L L L + + +
Sbjct: 260 NKITSIPVGAFTGLTGLTDLYLDGNQITSIPSSSFTNLTALTALALQNNPITTLPPGLFK 319
Query: 322 GLTN 325
GL N
Sbjct: 320 GLPN 323
>gi|195430566|ref|XP_002063325.1| GK21848 [Drosophila willistoni]
gi|194159410|gb|EDW74311.1| GK21848 [Drosophila willistoni]
Length = 543
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 120/374 (32%), Positives = 189/374 (50%), Gaps = 68/374 (18%)
Query: 7 SQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG 66
S +FN LV R + +V + + R +L+DL LG +L S++LSG
Sbjct: 207 SPSLFNCLV-RRGIKKVQILSLRR-SLKDLVLGV----------------PALTSLNLSG 248
Query: 67 S-DVTDSGLIHL--KDCSNLQSLDFNFCIQISDGGL----EHLRGLSNLTSLSFRRNNAI 119
+V D L H D NL++LD + C QI+D L +HLR NL +L I
Sbjct: 249 CFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLR---NLETLELGGCCNI 305
Query: 120 TAQGMKAFA-GLINLVKLDLERCTRIH-GGLVNLKGL--------MKLESLNIKWCNCIT 169
T G+ A GL L L+L C I G+ +L G ++LE L ++ C ++
Sbjct: 306 TNTGLLLIAWGLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEYLGLQDCQRLS 365
Query: 170 DSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
D + ++ GLT+LKS+ +S C VTDSG+ +L + KL LNL C D++S +
Sbjct: 366 DEALGHIAQGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSC-------DNISDI 418
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHL-KGLTNLESLNLDS 285
G + L++ G S I SL V F ++I+D+ L H+ +GL L SL+L+
Sbjct: 419 GMAY--------LTEGG----SGINSLDV---SFCDKISDQALTHIAQGLYRLRSLSLNQ 463
Query: 286 CGIGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLS-GLTNLESINL-SFTGISDGSL 341
C I D+G++ + L L+ L + +++ GL+ L+ LTNL++I+L T ++ +
Sbjct: 464 CQITDQGMLKIAKSLQELENLNIGQCSRITDKGLQTLAEDLTNLKTIDLYGCTQLTSKGI 523
Query: 342 RKLAGLSSLKSLNL 355
+ L L+ LNL
Sbjct: 524 DIIMKLPKLQKLNL 537
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 102/314 (32%), Positives = 161/314 (51%), Gaps = 36/314 (11%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAF-----AGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
RG+ + LS RR+ G+ A +G N+ ++L H V+L L
Sbjct: 217 RGIKKVQILSLRRSLKDLVLGVPALTSLNLSGCFNVADMNLG-----HAFSVDLPNL--- 268
Query: 158 ESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLK-GLQKLTLLNLEGC 214
++L++ C ITD+ + ++ L NL++L++ C +T++G+ + GL+KL LNL C
Sbjct: 269 KTLDLSLCKQITDTSLGRIAQHLRNLETLELGGCCNITNTGLLLIAWGLKKLKHLNLRSC 328
Query: 215 PVTA-------ACLDSLSALGSLF--YLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-N 262
+ A +A G+L YL L CQ LSD+ ++ + SLK +NL F
Sbjct: 329 WHISDQGIGHLAGFSRETAEGNLQLEYLGLQDCQRLSDEALGHIAQGLTSLKSINLSFCV 388
Query: 263 EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRH 319
+TD L HL + LE LNL SC I D G+ LT G + L++S ++ L H
Sbjct: 389 SVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGSGINSLDVSFCDKISDQALTH 448
Query: 320 LS-GLTNLESINLSFTGISDGSLRKLA-GLSSLKSLNL-DARQITDTGLAALTS-LTGLT 375
++ GL L S++L+ I+D + K+A L L++LN+ +ITD GL L LT L
Sbjct: 449 IAQGLYRLRSLSLNQCQITDQGMLKIAKSLQELENLNIGQCSRITDKGLQTLAEDLTNLK 508
Query: 376 HLDLFG-ARITDSG 388
+DL+G ++T G
Sbjct: 509 TIDLYGCTQLTSKG 522
>gi|430746590|ref|YP_007205719.1| hypothetical protein Sinac_5908 [Singulisphaera acidiphila DSM
18658]
gi|430018310|gb|AGA30024.1| hypothetical protein Sinac_5908 [Singulisphaera acidiphila DSM
18658]
Length = 506
Score = 88.2 bits (217), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 96/336 (28%), Positives = 150/336 (44%), Gaps = 36/336 (10%)
Query: 65 SGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM 124
+ ++T +G+ L+ S L+ L S G L L G + L+ L A+T M
Sbjct: 159 AAPNLTPAGMAQLRTLSRLKGLSVRGFTD-SHGFLAGLMGKTRLSHLRLP-EAAVTDDEM 216
Query: 125 KAFAGLINL--VKLDLERCT-RIHGGLVNLK--GLMKLESLNIKWCNCITD--------- 170
GL +L ++LD T R + NLK L+ + + I +TD
Sbjct: 217 AIIGGLTDLEVLQLDGRNVTDRGFAHVANLKELSLLDMPGVRITDLAPVTDLVQLDVLGL 276
Query: 171 -----------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
S + PL GLTNL L + +++ D +A GL KL+ L + G
Sbjct: 277 SPDRATFARSVPSPGGPSSLGPLRGLTNLTQLTLGATQIEDRELAVAAGLPKLSYLMIGG 336
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS-KIGSLKVLNLGFNEITDECLVHL 272
+T A L L+ SL L ++D S ++ +L L + + +TD L L
Sbjct: 337 RRITEAGLARLAESKSLTGLRFTDTSIAD--LRPLSPRLHALWGLYMENSALTDAGLEPL 394
Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 332
T + L + + D GL +L L +L L L + + +GL L L +LE+++L+
Sbjct: 395 SDATRIGDLTITGSRMTDAGLHHLAPLPSLWKLRLGRSAITDAGLGRLKSLKSLETLSLT 454
Query: 333 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 368
T ++D S+ LAG SLKSLNLD I+ G+ L
Sbjct: 455 ETKLTDSSVETLAGFQSLKSLNLDRSGISPAGIERL 490
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 105/365 (28%), Positives = 156/365 (42%), Gaps = 49/365 (13%)
Query: 47 KWM-DVIASQ-GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQ------ISDGG 98
KWM D ++++V L G +V D L++ L +++ F IQ ++ G
Sbjct: 112 KWMRDAFGPDLFDTVVNVHLEGDNVDDE---LLENVGKLHGVEW-FTIQGHAAPNLTPAG 167
Query: 99 LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158
+ LR LS L LS R F T HG L L G +L
Sbjct: 168 MAQLRTLSRLKGLSVR-----------GF--------------TDSHGFLAGLMGKTRLS 202
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT- 217
L + +TD +M + GLT+L+ LQ+ VTD G A++ L++L+LL++ G +T
Sbjct: 203 HLRLPEA-AVTDDEMAIIGGLTDLEVLQLDGRNVTDRGFAHVANLKELSLLDMPGVRITD 261
Query: 218 -AACLD--SLSALG-SLFYLNLNRCQLSDDGCEKFSKI---GSLKVLNLGFNEITDECLV 270
A D L LG S R S G + +L L LG +I D L
Sbjct: 262 LAPVTDLVQLDVLGLSPDRATFARSVPSPGGPSSLGPLRGLTNLTQLTLGATQIEDRELA 321
Query: 271 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG-LTNLESI 329
GL L L + I + GL L +L L +DT + LR LS L L +
Sbjct: 322 VAAGLPKLSYLMIGGRRITEAGLARLAESKSLTGLRFTDTSIAD--LRPLSPRLHALWGL 379
Query: 330 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 389
+ + ++D L L+ + + L + ++TD GL L L L L L + ITD+G
Sbjct: 380 YMENSALTDAGLEPLSDATRIGDLTITGSRMTDAGLHHLAPLPSLWKLRLGRSAITDAGL 439
Query: 390 AYLRS 394
L+S
Sbjct: 440 GRLKS 444
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 83/286 (29%), Positives = 123/286 (43%), Gaps = 39/286 (13%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISD------- 96
V D M +I + L + L G +VTD G H+ + L LD ++I+D
Sbjct: 211 VTDDEMAIIGGL-TDLEVLQLDGRNVTDRGFAHVANLKELSLLDMP-GVRITDLAPVTDL 268
Query: 97 ----------------------GG---LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLI 131
GG L LRGL+NLT L+ I + + AGL
Sbjct: 269 VQLDVLGLSPDRATFARSVPSPGGPSSLGPLRGLTNLTQLTLGATQ-IEDRELAVAAGLP 327
Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG-LTNLKSLQISCS 190
L L + GL L L L + +D++PLS L L L + S
Sbjct: 328 KLSYLMIGGRRITEAGLARLAESKSLTGLRFTDTSI---ADLRPLSPRLHALWGLYMENS 384
Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 250
+TD+G+ L ++ L + G +T A L L+ L SL+ L L R ++D G +
Sbjct: 385 ALTDAGLEPLSDATRIGDLTITGSRMTDAGLHHLAPLPSLWKLRLGRSAITDAGLGRLKS 444
Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
+ SL+ L+L ++TD + L G +L+SLNLD GI G+ L
Sbjct: 445 LKSLETLSLTETKLTDSSVETLAGFQSLKSLNLDRSGISPAGIERL 490
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 91/190 (47%), Gaps = 34/190 (17%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLS-NLTSLS--FRRNNAIT 120
+ G +T++GL L + +L L F +D + LR LS L +L + N+A+T
Sbjct: 334 IGGRRITEAGLARLAESKSLTGLRF------TDTSIADLRPLSPRLHALWGLYMENSALT 387
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
G++ L TRI G + + G + +TD+ + L+ L
Sbjct: 388 DAGLEP-----------LSDATRI--GDLTITG------------SRMTDAGLHHLAPLP 422
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
+L L++ S +TD+G+ LK L+ L L+L +T + +++L+ SL LNL+R +
Sbjct: 423 SLWKLRLGRSAITDAGLGRLKSLKSLETLSLTETKLTDSSVETLAGFQSLKSLNLDRSGI 482
Query: 241 SDDGCEKFSK 250
S G E+ +
Sbjct: 483 SPAGIERLKQ 492
>gi|428317856|ref|YP_007115738.1| Tetratricopeptide TPR_1 repeat-containing protein [Oscillatoria
nigro-viridis PCC 7112]
gi|428241536|gb|AFZ07322.1| Tetratricopeptide TPR_1 repeat-containing protein [Oscillatoria
nigro-viridis PCC 7112]
Length = 1221
Score = 88.2 bits (217), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 101/308 (32%), Positives = 148/308 (48%), Gaps = 32/308 (10%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH--GGLVNL--------- 151
+ L+NLT LS RN + + + F L L L + + T + GL NL
Sbjct: 83 KTLTNLTELSLIRNQIVDIKPLSKFTNLRKL-NLSINQITDVQPLSGLTNLRYLTLTSNQ 141
Query: 152 ----KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 207
K L L +L + + D+KPLS TNL+ L +S +++TD + L GL L
Sbjct: 142 ISDVKPLSGLTNLTLLYLADNQIVDIKPLSKFTNLRRLNLSVNQITD--VQPLSGLTNLR 199
Query: 208 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 267
L L ++ + LS L +L L L Q+ D + + + +L L+L N+I D
Sbjct: 200 SLVLNFNQIS--DVKPLSGLTNLTELFLEANQIVD--VKPLAGLTNLTGLSLASNQIVD- 254
Query: 268 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 327
+ L +T L L L I D + L+GL NL L L+ Q+ ++ LSGLTNL
Sbjct: 255 -VTPLSTMTELNFLYLSGNKIAD--VKPLSGLTNLIVLFLASNQIAD--VKPLSGLTNLP 309
Query: 328 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 387
+++LS I+D + LAGL++L +L+L QI D L L LT LDL +I D
Sbjct: 310 TLDLSRNQIADAT--PLAGLTNLTNLDLSRNQIADA--TPLAGLVYLTTLDLSRNQIPDG 365
Query: 388 GAAYLRSK 395
A L K
Sbjct: 366 EAERLIQK 373
Score = 88.2 bits (217), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 104/309 (33%), Positives = 154/309 (49%), Gaps = 49/309 (15%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ ++L ++LS + +TD + L +NL+ L QISD ++ L GL+NLT L
Sbjct: 105 SKFTNLRKLNLSINQITD--VQPLSGLTNLRYLTLT-SNQISD--VKPLSGLTNLTLLYL 159
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
N + +K + NL +L+L N IT D+
Sbjct: 160 ADNQIV---DIKPLSKFTNLRRLNLS-------------------------VNQIT--DV 189
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
+PLSGLTNL+SL ++ ++++D + L GL LT L LE + + L+ L +L L
Sbjct: 190 QPLSGLTNLRSLVLNFNQISD--VKPLSGLTNLTELFLEANQIV--DVKPLAGLTNLTGL 245
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+L Q+ D S + L L L N+I D + L GLTNL L L S I D +
Sbjct: 246 SLASNQIVD--VTPLSTMTELNFLYLSGNKIAD--VKPLSGLTNLIVLFLASNQIAD--V 299
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
L+GL NL L+LS Q+ + L+GLTNL +++LS I+D + LAGL L +L
Sbjct: 300 KPLSGLTNLPTLDLSRNQIADAT--PLAGLTNLTNLDLSRNQIADAT--PLAGLVYLTTL 355
Query: 354 NLDARQITD 362
+L QI D
Sbjct: 356 DLSRNQIPD 364
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 77/237 (32%), Positives = 113/237 (47%), Gaps = 44/237 (18%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ ++L ++LS + +TD + L +NL+SL NF QISD ++ L GL+NLT L
Sbjct: 171 SKFTNLRRLNLSVNQITD--VQPLSGLTNLRSLVLNFN-QISD--VKPLSGLTNLTELFL 225
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC--NCITD- 170
N + +K AGL NL L L +V++ L + LN + N I D
Sbjct: 226 EANQIV---DVKPLAGLTNLTGLSL-----ASNQIVDVTPLSTMTELNFLYLSGNKIADV 277
Query: 171 -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
+D+KPLSGLTNL +L +S +++ D+ L GL LT L+L
Sbjct: 278 KPLSGLTNLIVLFLASNQIADVKPLSGLTNLPTLDLSRNQIADA--TPLAGLTNLTNLDL 335
Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 268
+ A L+ L L L+L+R Q+ D E+ I K L N+ TDE
Sbjct: 336 SRNQIADAT--PLAGLVYLTTLDLSRNQIPDGEAERL--IQKNKQL---LNQKTDEA 385
>gi|347547841|ref|YP_004854169.1| putative internalin A [Listeria ivanovii subsp. ivanovii PAM 55]
gi|346980912|emb|CBW84831.1| Putative internalin A [Listeria ivanovii subsp. ivanovii PAM 55]
Length = 798
Score = 88.2 bits (217), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 116/358 (32%), Positives = 168/358 (46%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+++ +D S + +TD L L + + L SL N QI+D L L+ L++LT L+ N
Sbjct: 98 NNVTQLDFSYNQITD--LTPLANLTKLTSLVMNNN-QIAD--LTPLQNLTSLTELTLFYN 152
Query: 117 NAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
+ L NL D E T I G L NL+GL N +TD +K
Sbjct: 153 KITDVAPLANLTNLTNLAITDNEISDVTPI-GNLTNLEGL--------SIGNKVTD--IK 201
Query: 175 PLSGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
PL+ LT L+ L +S +K+TD S +A L LQ L+L N + + L L L +L L
Sbjct: 202 PLANLTKLERLNLSRNKITDISPVAKLINLQSLSLDNNQ-----FSDLTPLGILTNLTEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+L LSD G + + +LK LNL N+I++ L + LTNL LNL + I D L
Sbjct: 257 SLYSNHLSDIGT--LASLTNLKKLNLMDNQISN--LAPISNLTNLTDLNLSTNQISD--L 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS------------- 340
++ L NL L++ Q+ + +S L NLE + L ISD S
Sbjct: 311 KPISNLTNLTVLQVPTNQL--EDISPISSLPNLEFLTLYTNQISDLSPLENLTKLKQLFF 368
Query: 341 -------LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
+ +A L+SL+ L+ QI+D L L LT LT L L ++T Y
Sbjct: 369 YDNKVSDVSPIANLTSLQELSAGTNQISD--LTPLAKLTRLTQLGLDKQKVTSQPVKY 424
>gi|290976637|ref|XP_002671046.1| predicted protein [Naegleria gruberi]
gi|284084611|gb|EFC38302.1| predicted protein [Naegleria gruberi]
Length = 350
Score = 88.2 bits (217), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 82/327 (25%), Positives = 151/327 (46%), Gaps = 29/327 (8%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
+D+ + +L L L+ + C +I++ G+E + G+ LTSL N I G+K+
Sbjct: 36 NDIGYKAVEYLSKLEKLTILNISKC-KITNLGIESMIGMKQLTSLEISEN-GIDDSGVKS 93
Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
L L KLD++ + + C CI S + NL L
Sbjct: 94 LIELSQLTKLDIDH-----------------NEIRTEGCKCI--------SQMKNLTDLS 128
Query: 187 ISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA-CLDSLSALGSLFYLNLNRCQLSDDGC 245
+ + + + GI ++ L++LT L+ + + + S+++L L LN+ + D G
Sbjct: 129 VGLNGIDEEGIKFICELKQLTNLSAHAIQIVSVDGVQSITSLKQLISLNIGDNWIGDAGA 188
Query: 246 EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 305
+ S++ LK L + I + + +TNL L++ + +GDEG ++GL L L
Sbjct: 189 KVISEMKQLKTLYMHSTLIGIDGTKSISEMTNLTFLDISANNLGDEGAKLISGLNQLIKL 248
Query: 306 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 365
+S+ +G+ G +S L L +++ I + L+ L L L++ I D+G+
Sbjct: 249 WISEISIGNEGAESISKLEKLTELDVHRNSIETEGAKSLSKLKHLTRLDISENFIEDSGV 308
Query: 366 AALTSLTGLTHLDLFGARITDSGAAYL 392
L+ + L HL+++ I D+G YL
Sbjct: 309 KYLSKMKKLKHLNVYDNGI-DNGNKYL 334
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 83/301 (27%), Positives = 139/301 (46%), Gaps = 26/301 (8%)
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N I+++ ++ LINL +L + + + L L KL LNI C IT+ ++ +
Sbjct: 12 NVISSEATQSIGNLINLTELSIGYNDIGYKAVEYLSKLEKLTILNISKCK-ITNLGIESM 70
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL-------EGCP-------------- 215
G+ L SL+IS + + DSG+ L L +LT L++ EGC
Sbjct: 71 IGMKQLTSLEISENGIDDSGVKSLIELSQLTKLDIDHNEIRTEGCKCISQMKNLTDLSVG 130
Query: 216 ---VTAACLDSLSALGSLFYLNLNRCQL-SDDGCEKFSKIGSLKVLNLGFNEITDECLVH 271
+ + + L L L+ + Q+ S DG + + + L LN+G N I D
Sbjct: 131 LNGIDEEGIKFICELKQLTNLSAHAIQIVSVDGVQSITSLKQLISLNIGDNWIGDAGAKV 190
Query: 272 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 331
+ + L++L + S IG +G +++ + NL L++S +G G + +SGL L + +
Sbjct: 191 ISEMKQLKTLYMHSTLIGIDGTKSISEMTNLTFLDISANNLGDEGAKLISGLNQLIKLWI 250
Query: 332 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
S I + ++ L L L++ I G +L+ L LT LD+ I DSG Y
Sbjct: 251 SEISIGNEGAESISKLEKLTELDVHRNSIETEGAKSLSKLKHLTRLDISENFIEDSGVKY 310
Query: 392 L 392
L
Sbjct: 311 L 311
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 64/232 (27%), Positives = 115/232 (49%), Gaps = 7/232 (3%)
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
N I+ + + L NL L I + + + YL L+KLT+LN+ C +T ++S+
Sbjct: 11 SNVISSEATQSIGNLINLTELSIGYNDIGYKAVEYLSKLEKLTILNISKCKITNLGIESM 70
Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE---CLVHLKGLTNLESL 281
+ L L ++ + D G + ++ L L++ NEI E C+ +K LT+L S+
Sbjct: 71 IGMKQLTSLEISENGIDDSGVKSLIELSQLTKLDIDHNEIRTEGCKCISQMKNLTDL-SV 129
Query: 282 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS-SGLRHLSGLTNLESINLSFTGISDGS 340
L+ GI +EG+ + L L L Q+ S G++ ++ L L S+N+ I D
Sbjct: 130 GLN--GIDEEGIKFICELKQLTNLSAHAIQIVSVDGVQSITSLKQLISLNIGDNWIGDAG 187
Query: 341 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
+ ++ + LK+L + + I G +++ +T LT LD+ + D GA +
Sbjct: 188 AKVISEMKQLKTLYMHSTLIGIDGTKSISEMTNLTFLDISANNLGDEGAKLI 239
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 95/191 (49%), Gaps = 1/191 (0%)
Query: 203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 262
+ +L L+L +++ S+ L +L L++ + E SK+ L +LN+
Sbjct: 1 MDQLKKLDLISNVISSEATQSIGNLINLTELSIGYNDIGYKAVEYLSKLEKLTILNISKC 60
Query: 263 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 322
+IT+ + + G+ L SL + GI D G+ +L L L L++ ++ + G + +S
Sbjct: 61 KITNLGIESMIGMKQLTSLEISENGIDDSGVKSLIELSQLTKLDIDHNEIRTEGCKCISQ 120
Query: 323 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT-GLAALTSLTGLTHLDLFG 381
+ NL +++ GI + ++ + L L +L+ A QI G+ ++TSL L L++
Sbjct: 121 MKNLTDLSVGLNGIDEEGIKFICELKQLTNLSAHAIQIVSVDGVQSITSLKQLISLNIGD 180
Query: 382 ARITDSGAAYL 392
I D+GA +
Sbjct: 181 NWIGDAGAKVI 191
>gi|300704275|ref|YP_003745878.1| leucine-rich-repeat type III effector protein (gala6) [Ralstonia
solanacearum CFBP2957]
gi|299071939|emb|CBJ43268.1| leucine-rich-repeat type III effector protein (GALA6) [Ralstonia
solanacearum CFBP2957]
Length = 519
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 124/406 (30%), Positives = 183/406 (45%), Gaps = 36/406 (8%)
Query: 4 RDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVN------DKWMDVIASQGS 57
R++++++ N SR + V+ RD A+ LG+YP + + ++ + +
Sbjct: 2 REVNRELRN---ASRAV--VTHLTIRDPAMF-AHLGKYPALTSVRFKGELTLEALKALPP 55
Query: 58 SLLSVDLS---GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
+ +D+S G V+++GL HL L+SL N I+I G L ++LTSLS
Sbjct: 56 GVEHLDISRCTGRGVSNAGLAHLA-TRPLKSLSLN-GIEIDAEGARLLATCASLTSLSLT 113
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGL--------MKLESLNIKWCN 166
+I + A A ++ LDL VN+ G L SLN+ N
Sbjct: 114 -GCSIGDRAATALAQSRSIASLDLS---------VNMIGPDGARALASAPLVSLNLH-NN 162
Query: 167 CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 226
I D L+ LKSL S + + D+G+ LT LNL G + A +L
Sbjct: 163 GIGDEGALALATSGTLKSLNASNNGIGDAGVLGFADNTVLTQLNLAGNMIGPAGARALRR 222
Query: 227 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 286
SL L+L+ +L D G + + SL LN+ NEI D+ L T L+SLNL
Sbjct: 223 NTSLTELDLSTNRLGDAGAQALAGSRSLTSLNVRSNEIGDDGTEALARNTTLKSLNLSYN 282
Query: 287 GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG 346
IG G L G L+ L+L + G L+ T+L S++L I D R LA
Sbjct: 283 PIGFWGAGALGGSTTLRELDLRCCAIDPYGASALARNTSLASLHLGSNRIGDDGARALAT 342
Query: 347 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
+L L+L I D G AL LT L+L+G + D GAA L
Sbjct: 343 SRTLTLLDLSRNNIHDAGAQALAGNGSLTSLNLYGNEVDDDGAAAL 388
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 104/345 (30%), Positives = 151/345 (43%), Gaps = 31/345 (8%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+ L+S++L + + D G + L L+SL+ + I D G+ + LT L+
Sbjct: 152 APLVSLNLHNNGIGDEGALALATSGTLKSLNASNN-GIGDAGVLGFADNTVLTQLNLA-G 209
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N I G +A +L +LDL G L G L SLN++ N I D + L
Sbjct: 210 NMIGPAGARALRRNTSLTELDLSTNRLGDAGAQALAGSRSLTSLNVR-SNEIGDDGTEAL 268
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC---PVTAACLDSLSALGSLFY- 232
+ T LKSL +S + + G L G L L+L C P A+ L ++L SL
Sbjct: 269 ARNTTLKSLNLSYNPIGFWGAGALGGSTTLRELDLRCCAIDPYGASALARNTSLASLHLG 328
Query: 233 --------------------LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
L+L+R + D G + + GSL LNL NE+ D+ L
Sbjct: 329 SNRIGDDGARALATSRTLTLLDLSRNNIHDAGAQALAGNGSLTSLNLYGNEVDDDGAAAL 388
Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 332
L SLNL IG G +L L L+LS+ ++G G LS T L ++N+S
Sbjct: 389 AQHPRLTSLNLGRNRIGPNGAQHLAKSATLTELDLSENRLGPEGAEALSLSTVLTTLNVS 448
Query: 333 FTGISDGSLRKLAGLS-SLKSLNLDARQITDTG---LAALTSLTG 373
I + R A S SL SL+ ++ + G L A T LTG
Sbjct: 449 DNAIGEAGARAFAEKSTSLTSLDARNNRMGEAGANLLEANTRLTG 493
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 93/360 (25%), Positives = 145/360 (40%), Gaps = 22/360 (6%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLE-----------HLRGL 105
+SL S+ L+G + D L ++ SLD + + DG H G+
Sbjct: 105 ASLTSLSLTGCSIGDRAATALAQSRSIASLDLSVNMIGPDGARALASAPLVSLNLHNNGI 164
Query: 106 SNLTSLSFR----------RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLM 155
+ +L+ NN I G+ FA L +L+L G L+
Sbjct: 165 GDEGALALATSGTLKSLNASNNGIGDAGVLGFADNTVLTQLNLAGNMIGPAGARALRRNT 224
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215
L L++ N + D+ + L+G +L SL + +++ D G L L LNL P
Sbjct: 225 SLTELDLS-TNRLGDAGAQALAGSRSLTSLNVRSNEIGDDGTEALARNTTLKSLNLSYNP 283
Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 275
+ +L +L L+L C + G ++ SL L+LG N I D+ L
Sbjct: 284 IGFWGAGALGGSTTLRELDLRCCAIDPYGASALARNTSLASLHLGSNRIGDDGARALATS 343
Query: 276 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 335
L L+L I D G L G +L L L +V G L+ L S+NL
Sbjct: 344 RTLTLLDLSRNNIHDAGAQALAGNGSLTSLNLYGNEVDDDGAAALAQHPRLTSLNLGRNR 403
Query: 336 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRSK 395
I + LA ++L L+L ++ G AL+ T LT L++ I ++GA K
Sbjct: 404 IGPNGAQHLAKSATLTELDLSENRLGPEGAEALSLSTVLTTLNVSDNAIGEAGARAFAEK 463
>gi|320163275|gb|EFW40174.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 989
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 107/399 (26%), Positives = 177/399 (44%), Gaps = 42/399 (10%)
Query: 4 RDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVD 63
+++ Q+ +LV + L++ ++ F C LQ + L YP
Sbjct: 460 QEVGMQLMAQLVRDKQLSDKNMGVFLPCHLQVIRLDAYPY-------------------- 499
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF---RRNNAIT 120
VT+ L ++ S LQ L ++ G+ H+ GL+NL L R N+
Sbjct: 500 -----VTNELLCAMRFFSLLQELSIRSAEFVTHVGINHIAGLNNLRVLDLGITRLND--- 551
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGL-MKLESLNIKWCNCITDSDMKPLSGL 179
Q M + L L L+LER GL L L L+ L+I C+ +T+ + L+
Sbjct: 552 -QAMPTISQL-PLTVLNLERTLITDSGLARLAPLGATLQHLDISDCSKLTERGLALLAAF 609
Query: 180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 239
L++L I+ +TD G L +L LNL + LDS+ L +L+L +
Sbjct: 610 PQLRTLAIAGLPLTDVG--RLSNFPELRSLNLARTAIVEGKLDSIRRYIHLVHLSLANTK 667
Query: 240 LSDDGCEKFSKIGSLKVLNLGFN-EITDECLVHLKGLTNLESLNL-DSCGIGDEGLVNLT 297
L D+ + +L L L +I + + H+ L L L+L D + DEG+ ++
Sbjct: 668 LGDNDVRYLQYLTNLSSLKLPSRFQIGNSSIAHISKLP-LTELDLTDYIHVTDEGIQFIS 726
Query: 298 GLC-NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
L L L LS+T++ S+G+ ++ T LE + L T + D + LA L+ L++L+L
Sbjct: 727 ALAPTLVSLSLSNTKLTSAGIPAVAACTKLEVLQLDRTPLKDDVIPLLAPLTRLRTLSLS 786
Query: 357 ARQITDTGL--AALTSLTGLTHLDLFGARITDSGAAYLR 393
+T + A + T L L+L I + G LR
Sbjct: 787 RTHLTSAVVRSGAFSPFTRLESLNLSWTFIENQGLDQLR 825
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 82/313 (26%), Positives = 132/313 (42%), Gaps = 52/313 (16%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDC-SNLQSLDFNFCIQISDGGLEHL 102
+ND+ M I+ ++L +L + +TDSGL L + LQ LD + C ++++ GL L
Sbjct: 549 LNDQAMPTISQLPLTVL--NLERTLITDSGLARLAPLGATLQHLDISDCSKLTERGLALL 606
Query: 103 RGLSNLTSLSF---------RRNN------------AITAQGMKAFAGLINLVKLDLERC 141
L +L+ R +N AI + + I+LV L L
Sbjct: 607 AAFPQLRTLAIAGLPLTDVGRLSNFPELRSLNLARTAIVEGKLDSIRRYIHLVHLSLANT 666
Query: 142 ------TRIHGGLVNLKGL------------------MKLESLNIKWCNCITDSDMKPLS 177
R L NL L + L L++ +TD ++ +S
Sbjct: 667 KLGDNDVRYLQYLTNLSSLKLPSRFQIGNSSIAHISKLPLTELDLTDYIHVTDEGIQFIS 726
Query: 178 GL-TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
L L SL +S +K+T +GI + KL +L L+ P+ + L+ L L L+L+
Sbjct: 727 ALAPTLVSLSLSNTKLTSAGIPAVAACTKLEVLQLDRTPLKDDVIPLLAPLTRLRTLSLS 786
Query: 237 RCQLSDDGCEK--FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
R L+ FS L+ LNL + I ++ L L+ L L +LNLDS + +
Sbjct: 787 RTHLTSAVVRSGAFSPFTRLESLNLSWTFIENQGLDQLR-LPMLTTLNLDSTRVTANVPL 845
Query: 295 NLTGLCNLKCLEL 307
LT L L + +
Sbjct: 846 MLTQLPALTTVRM 858
>gi|290994542|ref|XP_002679891.1| predicted protein [Naegleria gruberi]
gi|284093509|gb|EFC47147.1| predicted protein [Naegleria gruberi]
Length = 359
Score = 87.8 bits (216), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 69/274 (25%), Positives = 131/274 (47%), Gaps = 1/274 (0%)
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
+ A+G + L +L LD+ + G ++ + +L LNI N I K +
Sbjct: 51 VNAEGANMISNLAHLADLDISNNQLLERGSKIIREMTQLTKLNISRNN-INAGGTKSICE 109
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
+T L L IS + + + G +Y+ G+ KLT L++ + + SL + +L LN++ C
Sbjct: 110 MTQLTDLDISNNFIGNEGASYIGGMTKLTNLSISENHIGVEGIKSLFHINNLICLNISSC 169
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
++ D+G S++ L L + NEI + + L LN+ +G+EG +
Sbjct: 170 KIGDEGARLISEMKQLTTLEISHNEIGSYGSKAISEMYQLTKLNIRYNVLGNEGAHYIGI 229
Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
+ L L++S ++ G + LS L+ L ++++ I D ++ ++ L L L++
Sbjct: 230 MEQLTELDISHNRISGEGAKSLSKLSQLTKLDINTNEIGDEGMKSISKLDQLLYLDIGEN 289
Query: 359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
+I D G + ++ LT L + R+ + GA L
Sbjct: 290 EIGDIGTGLIIGMSKLTELLINDNRVGNDGAESL 323
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 81/319 (25%), Positives = 151/319 (47%), Gaps = 3/319 (0%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L +D+S V G + + ++L LD + Q+ + G + +R ++ LT L+ RNN
Sbjct: 41 LTKLDVSSWLVNAEGANMISNLAHLADLDISNN-QLLERGSKIIREMTQLTKLNISRNN- 98
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
I A G K+ + L LD+ + G + G+ KL +L+I N I +K L
Sbjct: 99 INAGGTKSICEMTQLTDLDISNNFIGNEGASYIGGMTKLTNLSISE-NHIGVEGIKSLFH 157
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
+ NL L IS K+ D G + +++LT L + + + ++S + L LN+
Sbjct: 158 INNLICLNISSCKIGDEGARLISEMKQLTTLEISHNEIGSYGSKAISEMYQLTKLNIRYN 217
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
L ++G + L L++ N I+ E L L+ L L++++ IGDEG+ +++
Sbjct: 218 VLGNEGAHYIGIMEQLTELDISHNRISGEGAKSLSKLSQLTKLDINTNEIGDEGMKSISK 277
Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
L L L++ + ++G G + G++ L + ++ + + LA + L L++
Sbjct: 278 LDQLLYLDIGENEIGDIGTGLIIGMSKLTELLINDNRVGNDGAESLAQMHQLTQLDICNN 337
Query: 359 QITDTGLAALTSLTGLTHL 377
+ D L L+ L L +
Sbjct: 338 PVNDDSLELLSKLPDLINF 356
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 73/310 (23%), Positives = 143/310 (46%), Gaps = 3/310 (0%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
++ C L LD + + ++ G + L++L L NN + +G K + L KL
Sbjct: 35 IRMCGKLTKLDVSSWL-VNAEGANMISNLAHLADLDIS-NNQLLERGSKIIREMTQLTKL 92
Query: 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG 196
++ R GG ++ + +L L+I N I + + G+T L +L IS + + G
Sbjct: 93 NISRNNINAGGTKSICEMTQLTDLDIS-NNFIGNEGASYIGGMTKLTNLSISENHIGVEG 151
Query: 197 IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 256
I L + L LN+ C + +S + L L ++ ++ G + S++ L
Sbjct: 152 IKSLFHINNLICLNISSCKIGDEGARLISEMKQLTTLEISHNEIGSYGSKAISEMYQLTK 211
Query: 257 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 316
LN+ +N + +E ++ + L L++ I EG +L+ L L L+++ ++G G
Sbjct: 212 LNIRYNVLGNEGAHYIGIMEQLTELDISHNRISGEGAKSLSKLSQLTKLDINTNEIGDEG 271
Query: 317 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 376
++ +S L L +++ I D + G+S L L ++ ++ + G +L + LT
Sbjct: 272 MKSISKLDQLLYLDIGENEIGDIGTGLIIGMSKLTELLINDNRVGNDGAESLAQMHQLTQ 331
Query: 377 LDLFGARITD 386
LD+ + D
Sbjct: 332 LDICNNPVND 341
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 92/188 (48%)
Query: 205 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 264
KLT L++ V A + +S L L L+++ QL + G + ++ L LN+ N I
Sbjct: 40 KLTKLDVSSWLVNAEGANMISNLAHLADLDISNNQLLERGSKIIREMTQLTKLNISRNNI 99
Query: 265 TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT 324
+ +T L L++ + IG+EG + G+ L L +S+ +G G++ L +
Sbjct: 100 NAGGTKSICEMTQLTDLDISNNFIGNEGASYIGGMTKLTNLSISENHIGVEGIKSLFHIN 159
Query: 325 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 384
NL +N+S I D R ++ + L +L + +I G A++ + LT L++ +
Sbjct: 160 NLICLNISSCKIGDEGARLISEMKQLTTLEISHNEIGSYGSKAISEMYQLTKLNIRYNVL 219
Query: 385 TDSGAAYL 392
+ GA Y+
Sbjct: 220 GNEGAHYI 227
>gi|326427049|gb|EGD72619.1| hypothetical protein PTSG_04354 [Salpingoeca sp. ATCC 50818]
Length = 1165
Score = 87.8 bits (216), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 96/372 (25%), Positives = 165/372 (44%), Gaps = 33/372 (8%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
LP +++++ L S++AFR C +Q L V D ++ V+ +Q +L
Sbjct: 736 LPETLAREVMTAAAEKETLNSKSIKAFRSCGIQHLAFRSSVVVTDAFLRVLGTQFPTLYE 795
Query: 62 VDLSGSDV-TDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA-I 119
+++ + T G+ LK NL SL + +D ++ L L L S N A +
Sbjct: 796 LEIYDCPMLTFRGIAALKGAPNLASLHLSGA--FTDSCVDALMSLHPLEHFSL--NGARV 851
Query: 120 TAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGL 179
++Q F L T H L+SL + C + D + + GL
Sbjct: 852 SSQQFARF----------LSSPTATH-----------LQSLALTSCPALDDGILPSICGL 890
Query: 180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 239
T+L L +S + V + L L L LNL + + +L+A ++ L L
Sbjct: 891 TDLGHLSLSKTPV--RAVGQLASLPHLYSLNLSYTRASEREVGALAAATNMTTLGLFGLN 948
Query: 240 LSDDGCEKFSKIGSLKVLNLGFNE-ITDECLVHLKGLTNLESLNLDS-CGIGDEGLVNLT 297
LS D ++ GSL L L + D CL H+ LT++ +L+L + +GL +
Sbjct: 949 LSSDAYAPWAGHGSLAELTLSSRDSFDDACLAHVCTLTHVTTLDLSGYYQLTPDGLKAIA 1008
Query: 298 GLCNLKCLELSDTQVGSSGLRHLS--GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355
+ L+ L LS+T + + L H+ GL +L++ ++S T ++D G +++ LNL
Sbjct: 1009 AMQQLQSLSLSNTALTDAALLHIGGVGLPSLDTFDISRTDVTDACAPAFKGFAAVARLNL 1068
Query: 356 DARQITDTGLAA 367
+IT+T A
Sbjct: 1069 SRTRITNTFFHA 1080
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 67/228 (29%), Positives = 106/228 (46%), Gaps = 51/228 (22%)
Query: 157 LESLNIKWCNCITDSDMKPL-SGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGC 214
++ L + +TD+ ++ L + L L+I C +T GIA LKG L L+L G
Sbjct: 767 IQHLAFRSSVVVTDAFLRVLGTQFPTLYELEIYDCPMLTFRGIAALKGAPNLASLHLSGA 826
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 274
T +C+D+L +L L + +LN ++S ++F++ S
Sbjct: 827 -FTDSCVDALMSLHPLEHFSLNGARVS---SQQFARFLSSPTA----------------- 865
Query: 275 LTNLESLNLDSCGIGDEG-LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333
T+L+SL L SC D+G L ++ GL +L L LS T V + G L+ L +L S+NLS+
Sbjct: 866 -THLQSLALTSCPALDDGILPSICGLTDLGHLSLSKTPVRAVG--QLASLPHLYSLNLSY 922
Query: 334 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 381
T S+ R++ AL + T +T L LFG
Sbjct: 923 TRASE-------------------REV-----GALAAATNMTTLGLFG 946
>gi|296123881|ref|YP_003631659.1| serine/threonine protein kinase-related protein [Planctomyces
limnophilus DSM 3776]
gi|296016221|gb|ADG69460.1| Serine/threonine protein kinase-related protein [Planctomyces
limnophilus DSM 3776]
Length = 1655
Score = 87.8 bits (216), Expect = 8e-15, Method: Composition-based stats.
Identities = 95/364 (26%), Positives = 150/364 (41%), Gaps = 21/364 (5%)
Query: 25 LEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQ 84
L A +DC G+ D+ + I + +L S++L GS VT+ +L +L
Sbjct: 1279 LAALKDCHRLTFLALYNTGIGDEGVREIC-ELKALRSLELQGSKVTNEVFFYLMKLPHLL 1337
Query: 85 SLDFNFCIQISDGGLEHLRGLSNLTSL---------------SFRRNNAITAQGMKAFAG 129
S+D + Q++ +E R L + +N
Sbjct: 1338 SVDLRY-TQVTPEAIESFRKQKPLCEVKCDAGVLPRWEPNGDELVKNAKADRAAAAFVLK 1396
Query: 130 LINLVKLDLERCTRIHGGLVNLK-GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
V LD + +HG L L KL ++++ +T D + G NL LQ+
Sbjct: 1397 QGKYVWLDNAK-DPLHGDPAILPPHLFKLTGISLEGLKTLTPRDFEIFKGCQNLSDLQLL 1455
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 248
+TD + +G +T L L+G VT+ L S L +L++ Q D +
Sbjct: 1456 NMGITDEHLRAFEGTTSITKLKLDGQAVTSKGLSYFSGCKRLTFLSVWATQADDKFIQSI 1515
Query: 249 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 308
+ LNLG ITD + + L NLE L+ G+ DEG+ +L NL L L+
Sbjct: 1516 AS-PDYTYLNLGGTRITDASIAAFESLQNLEMATLNFTGLTDEGIEHLASAENLTYLGLN 1574
Query: 309 DTQVGSSGLRHLSGLTNLESINLSFTGISD-GSLRKLAGLSSLKSLNLDARQITDTGLAA 367
T++ + + L LE + LS T SD G L + L +LK LNL ++T +
Sbjct: 1575 HTRLTDASAKVFLKLNQLEELTLSNTQFSDQGLLLLVNALPNLKRLNLLETKVTADSVDK 1634
Query: 368 LTSL 371
SL
Sbjct: 1635 FQSL 1638
Score = 69.7 bits (169), Expect = 3e-09, Method: Composition-based stats.
Identities = 66/253 (26%), Positives = 110/253 (43%), Gaps = 34/253 (13%)
Query: 108 LTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNC 167
LT + FR + A+ + F+G +L K+ L +
Sbjct: 1146 LTGIEFRNKRDLDAKDFEVFSGCRDLEKVRLGFSS------------------------- 1180
Query: 168 ITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 226
I+D+ +KPL L L L++S C KVT + I + + LT L PV D L+
Sbjct: 1181 ISDAHLKPLENLPKLTHLELSQCEKVTGAAI---RKFKHLTHLEAWAVPVGD---DDLAP 1234
Query: 227 LGSLFYLNLNR--CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284
L + NL+ +++ F+ + L+ L F I ++ L LK L L L
Sbjct: 1235 LKDNPFRNLDLGGTRITGKALAAFTNLSDLRSSRLAFTSIKNKDLAALKDCHRLTFLALY 1294
Query: 285 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 344
+ GIGDEG+ + L L+ LEL ++V + +L L +L S++L +T ++ ++
Sbjct: 1295 NTGIGDEGVREICELKALRSLELQGSKVTNEVFFYLMKLPHLLSVDLRYTQVTPEAIESF 1354
Query: 345 AGLSSLKSLNLDA 357
L + DA
Sbjct: 1355 RKQKPLCEVKCDA 1367
Score = 60.1 bits (144), Expect = 2e-06, Method: Composition-based stats.
Identities = 46/168 (27%), Positives = 70/168 (41%), Gaps = 29/168 (17%)
Query: 244 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 303
GC+ S L++LN+G ITDE L +G T++ L LD + +GL +G L
Sbjct: 1445 GCQNLS---DLQLLNMG---ITDEHLRAFEGTTSITKLKLDGQAVTSKGLSYFSGCKRLT 1498
Query: 304 CLE-----------------------LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 340
L L T++ + + L NLE L+FTG++D
Sbjct: 1499 FLSVWATQADDKFIQSIASPDYTYLNLGGTRITDASIAAFESLQNLEMATLNFTGLTDEG 1558
Query: 341 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 388
+ LA +L L L+ ++TD L L L L + +D G
Sbjct: 1559 IEHLASAENLTYLGLNHTRLTDASAKVFLKLNQLEELTLSNTQFSDQG 1606
Score = 55.8 bits (133), Expect = 4e-05, Method: Composition-based stats.
Identities = 80/335 (23%), Positives = 135/335 (40%), Gaps = 13/335 (3%)
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
++DL G+ +T L + S+L+S F I + L L+ LT L+ N I
Sbjct: 1242 NLDLGGTRITGKALAAFTNLSDLRSSRLAF-TSIKNKDLAALKDCHRLTFLALY-NTGIG 1299
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
+G++ L L L+L+ + L L L S+++++ ++ +
Sbjct: 1300 DEGVREICELKALRSLELQGSKVTNEVFFYLMKLPHLLSVDLRYTQVTPEA-------IE 1352
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
+ + + C D+G+ L + ++ A + G +L+ + L
Sbjct: 1353 SFRKQKPLCEVKCDAGV--LPRWEPNGDELVKNAKADRAAAAFVLKQGKYVWLDNAKDPL 1410
Query: 241 SDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 299
D + L ++L G +T KG NL L L + GI DE L G
Sbjct: 1411 HGDPAILPPHLFKLTGISLEGLKTLTPRDFEIFKGCQNLSDLQLLNMGITDEHLRAFEGT 1470
Query: 300 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 359
++ L+L V S GL + SG L +++ T D ++ +A LNL +
Sbjct: 1471 TSITKLKLDGQAVTSKGLSYFSGCKRLTFLSVWATQADDKFIQSIAS-PDYTYLNLGGTR 1529
Query: 360 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRS 394
ITD +AA SL L L +TD G +L S
Sbjct: 1530 ITDASIAAFESLQNLEMATLNFTGLTDEGIEHLAS 1564
Score = 53.5 bits (127), Expect = 2e-04, Method: Composition-based stats.
Identities = 49/179 (27%), Positives = 73/179 (40%), Gaps = 23/179 (12%)
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-------- 287
N+ L E FS L+ + LGF+ I+D L L+ L L L L C
Sbjct: 1153 NKRDLDAKDFEVFSGCRDLEKVRLGFSSISDAHLKPLENLPKLTHLELSQCEKVTGAAIR 1212
Query: 288 --------------IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333
+GD+ L L + L+L T++ L + L++L S L+F
Sbjct: 1213 KFKHLTHLEAWAVPVGDDDLAPLKD-NPFRNLDLGGTRITGKALAAFTNLSDLRSSRLAF 1271
Query: 334 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
T I + L L L L L I D G+ + L L L+L G+++T+ YL
Sbjct: 1272 TSIKNKDLAALKDCHRLTFLALYNTGIGDEGVREICELKALRSLELQGSKVTNEVFFYL 1330
>gi|290978443|ref|XP_002671945.1| predicted protein [Naegleria gruberi]
gi|284085518|gb|EFC39201.1| predicted protein [Naegleria gruberi]
Length = 381
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 85/323 (26%), Positives = 146/323 (45%), Gaps = 20/323 (6%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L +++++ + + D G + L L +C +I + G + L NLT L+ N
Sbjct: 52 LTTLNINDNYILDEGAKFIGTMKQLTLLKMKYC-EIREEGARAISELKNLTFLNLH-GNF 109
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI----------KWCNCI 168
I +G + ++NL L++ G ++ GL L+SL I KW
Sbjct: 110 IGDKGASYISEMVNLTHLNVGSTQLTAEGARHVSGLKNLKSLLIHTNQIGHQGAKWI--- 166
Query: 169 TDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG 228
S MK L GLT SL +S + + D G+ YL + LT L++ V ++S+ +
Sbjct: 167 --STMKDLEGLT---SLDVSGNSILDQGVQYLSEMSNLTHLDIGSNHVGVKGIESIIGMK 221
Query: 229 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 288
L LN++ L G + S + +L LN+ N + E + + N+ L + + I
Sbjct: 222 GLISLNVSSNDLGSSGAKLISGMSNLTSLNISANRLLGEGAKFIGEMHNVTILVIRNNDI 281
Query: 289 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 348
GDEG + + LK L ++ S G +S + L S+++ + I + + L
Sbjct: 282 GDEGAKFICKMKQLKSLNAVYNRISSKGFESISEMKQLTSLDIGYNSIDSKGAKSVRKLK 341
Query: 349 SLKSLNLDARQITDTGLAALTSL 371
+L SLN+ + I D GL A+ L
Sbjct: 342 NLTSLNVRSNMIDDEGLKAIGQL 364
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/204 (29%), Positives = 103/204 (50%), Gaps = 3/204 (1%)
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
+ NLKSL I + + D + + ++ LTLL++ + +S + L LN+N
Sbjct: 1 MQNLKSLSIVGNGLVDEHLKEISEMKGLTLLDVSENKFGKEGAEKISGMVGLTTLNINDN 60
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
+ D+G + + L +L + + EI +E + L NL LNL IGD+G ++
Sbjct: 61 YILDEGAKFIGTMKQLTLLKMKYCEIREEGARAISELKNLTFLNLHGNFIGDKGASYISE 120
Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR---KLAGLSSLKSLNL 355
+ NL L + TQ+ + G RH+SGL NL+S+ + I + + L L SL++
Sbjct: 121 MVNLTHLNVGSTQLTAEGARHVSGLKNLKSLLIHTNQIGHQGAKWISTMKDLEGLTSLDV 180
Query: 356 DARQITDTGLAALTSLTGLTHLDL 379
I D G+ L+ ++ LTHLD+
Sbjct: 181 SGNSILDQGVQYLSEMSNLTHLDI 204
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 121/239 (50%), Gaps = 4/239 (1%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
+ L+SL+I N + D +K +S + L L +S +K G + G+ LT LN+
Sbjct: 1 MQNLKSLSI-VGNGLVDEHLKEISEMKGLTLLDVSENKFGKEGAEKISGMVGLTTLNIND 59
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
+ + + L L + C++ ++G S++ +L LNL N I D+ ++
Sbjct: 60 NYILDEGAKFIGTMKQLTLLKMKYCEIREEGARAISELKNLTFLNLHGNFIGDKGASYIS 119
Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE---SIN 330
+ NL LN+ S + EG +++GL NLK L + Q+G G + +S + +LE S++
Sbjct: 120 EMVNLTHLNVGSTQLTAEGARHVSGLKNLKSLLIHTNQIGHQGAKWISTMKDLEGLTSLD 179
Query: 331 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 389
+S I D ++ L+ +S+L L++ + + G+ ++ + GL L++ + SGA
Sbjct: 180 VSGNSILDQGVQYLSEMSNLTHLDIGSNHVGVKGIESIIGMKGLISLNVSSNDLGSSGA 238
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 84/344 (24%), Positives = 160/344 (46%), Gaps = 16/344 (4%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDG-----GLEHLRGLSNLTSLS 112
+L S+ + G+ + D HLK+ S ++ L + +S+ G E + G+ LT+L+
Sbjct: 3 NLKSLSIVGNGLVDE---HLKEISEMKGLTL---LDVSENKFGKEGAEKISGMVGLTTLN 56
Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 172
+N I +G K + L L ++ C G + L L LN+ N I D
Sbjct: 57 IN-DNYILDEGAKFIGTMKQLTLLKMKYCEIREEGARAISELKNLTFLNL-HGNFIGDKG 114
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT---AACLDSLSALGS 229
+S + NL L + +++T G ++ GL+ L L + + A + ++ L
Sbjct: 115 ASYISEMVNLTHLNVGSTQLTAEGARHVSGLKNLKSLLIHTNQIGHQGAKWISTMKDLEG 174
Query: 230 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 289
L L+++ + D G + S++ +L L++G N + + + + G+ L SLN+ S +G
Sbjct: 175 LTSLDVSGNSILDQGVQYLSEMSNLTHLDIGSNHVGVKGIESIIGMKGLISLNVSSNDLG 234
Query: 290 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 349
G ++G+ NL L +S ++ G + + + N+ + + I D + + +
Sbjct: 235 SSGAKLISGMSNLTSLNISANRLLGEGAKFIGEMHNVTILVIRNNDIGDEGAKFICKMKQ 294
Query: 350 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LKSLN +I+ G +++ + LT LD+ I GA +R
Sbjct: 295 LKSLNAVYNRISSKGFESISEMKQLTSLDIGYNSIDSKGAKSVR 338
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 64/118 (54%)
Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 334
+ NL+SL++ G+ DE L ++ + L L++S+ + G G +SG+ L ++N++
Sbjct: 1 MQNLKSLSIVGNGLVDEHLKEISEMKGLTLLDVSENKFGKEGAEKISGMVGLTTLNINDN 60
Query: 335 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
I D + + + L L + +I + G A++ L LT L+L G I D GA+Y+
Sbjct: 61 YILDEGAKFIGTMKQLTLLKMKYCEIREEGARAISELKNLTFLNLHGNFIGDKGASYI 118
>gi|168054406|ref|XP_001779622.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668936|gb|EDQ55533.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 627
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 110/430 (25%), Positives = 197/430 (45%), Gaps = 69/430 (16%)
Query: 18 RCLTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIH 76
R +T+V L A R C L+ L L G+ D + +A+ L ++DLS ++V+D G+
Sbjct: 145 RDVTDVGLSALRRCTELRILGLKYCSGIGDSGIQNVATGCPQLRNIDLSFTEVSDKGVSS 204
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLR-GLSNLTSLSFRRNNAITAQGMKAFAGL-INLV 134
L NL+ L CI ++D GL LR G +L L + + ++++G+ A G+ + L
Sbjct: 205 LALLKNLECLSIISCINVTDKGLSCLRSGCMSLQKLDVAKCSNVSSRGILALTGISLGLQ 264
Query: 135 KLDLERCTRIHG----------------------GLVNLK--GLMKLESLNIKWCNCITD 170
+L+L C +I G VNL G +L+ L++ C +TD
Sbjct: 265 ELNLSYCKKISDVLFASFQKLKTLQVVKLNGCAIGRVNLSLIGCKELKELSLSKCQGVTD 324
Query: 171 SDMK-PLSGLTNLKSLQISCSK-VTDSGI-AYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
+ + ++ T L+ L ++C + +TD + A + L L +E CP + + L+ +
Sbjct: 325 ASVVGVVTACTGLQKLDLTCCRDITDVALEAIAANCKGLLSLRMENCPSVTS--EGLTLI 382
Query: 228 GSLFY----LNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGL-TNLESL 281
G F L+L L+D+G + S+ +++L LG+ +IT+ L + NL
Sbjct: 383 GRNFAHLEELDLTDSNLNDNGLKSISRCTEMRLLKLGYCMDITNAGLASISSTCKNLREF 442
Query: 282 N-LDSCGIGDEGLVNLTGLCN-LK------CLELSDTQVGSSGLRH------LSGLTNLE 327
+ S GI D+G+ + C+ LK C ++D + S L L + +
Sbjct: 443 DCYRSVGISDDGVAAIARGCDRLKVVNLSYCASITDASLHSLALLRDLVQLELRACSQIT 502
Query: 328 SINLSFTGISDGSLRKL-----------------AGLSSLKSLNLDARQITDTGLAALTS 370
S+ +S+ G S LR+L G +L+ +NL +TD G+ A+ +
Sbjct: 503 SVGISYIGASCKHLRELDIKRCRFVGDPGVLALSRGCRNLRQINLSYTALTDLGMTAVAN 562
Query: 371 LTGLTHLDLF 380
++ + + L
Sbjct: 563 MSCIQDMKLV 572
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 107/392 (27%), Positives = 172/392 (43%), Gaps = 46/392 (11%)
Query: 44 VNDKWMDVIAS-QGSSLLSVDLSGSD-VTDSGLIHLKDCSNLQSLDFNFCIQISDG---- 97
V D+ + +A S LLS+ L + +G+ L +CS+LQ +D C QI D
Sbjct: 70 VTDQCLATVAKFTNSRLLSIKLIRTKGFGIAGVKSLVECSSLQDVDVTHCTQIGDAEVIV 129
Query: 98 ---------------------GLEHLRGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVK 135
GL LR + L L + + I G++ A G L
Sbjct: 130 LSKLKHLQKLKLNSCRDVTDVGLSALRRCTELRILGLKYCSGIGDSGIQNVATGCPQLRN 189
Query: 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL-SGLTNLKSLQIS-CSKVT 193
+DL G+ +L L LE L+I C +TD + L SG +L+ L ++ CS V+
Sbjct: 190 IDLSFTEVSDKGVSSLALLKNLECLSIISCINVTDKGLSCLRSGCMSLQKLDVAKCSNVS 249
Query: 194 DSGIAYLKGLQ-KLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI 251
GI L G+ L LNL C ++ S L +L + LN C + G S I
Sbjct: 250 SRGILALTGISLGLQELNLSYCKKISDVLFASFQKLKTLQVVKLNGCAI---GRVNLSLI 306
Query: 252 GSLKVLNLGFNE---ITDECLVH-LKGLTNLESLNLDSC-GIGDEGLVNLTGLCN-LKCL 305
G ++ L ++ +TD +V + T L+ L+L C I D L + C L L
Sbjct: 307 GCKELKELSLSKCQGVTDASVVGVVTACTGLQKLDLTCCRDITDVALEAIAANCKGLLSL 366
Query: 306 ELSD-TQVGSSGLRHL-SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD-ARQITD 362
+ + V S GL + +LE ++L+ + ++D L+ ++ + ++ L L IT+
Sbjct: 367 RMENCPSVTSEGLTLIGRNFAHLEELDLTDSNLNDNGLKSISRCTEMRLLKLGYCMDITN 426
Query: 363 TGLAALTSL-TGLTHLDLF-GARITDSGAAYL 392
GLA+++S L D + I+D G A +
Sbjct: 427 AGLASISSTCKNLREFDCYRSVGISDDGVAAI 458
Score = 45.1 bits (105), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 68/241 (28%), Positives = 112/241 (46%), Gaps = 32/241 (13%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215
++E L++ C +TD + ++ TN + L I + GIA +K
Sbjct: 58 QVEHLDLSSCVEVTDQCLATVAKFTNSRLLSIKLIRTKGFGIAGVK-------------- 103
Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN---EITDECLVHL 272
SL SL +++ C D E + L N ++TD L L
Sbjct: 104 -------SLVECSSLQDVDVTHCTQIGDA-EVIVLSKLKHLQKLKLNSCRDVTDVGLSAL 155
Query: 273 KGLTNLESLNLDSC-GIGDEGLVNL-TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 330
+ T L L L C GIGD G+ N+ TG L+ ++LS T+V G+ L+ L NLE ++
Sbjct: 156 RRCTELRILGLKYCSGIGDSGIQNVATGCPQLRNIDLSFTEVSDKGVSSLALLKNLECLS 215
Query: 331 -LSFTGISDGSLRKL-AGLSSLKSLNL-DARQITDTGLAALTSLT-GLTHLDL-FGARIT 385
+S ++D L L +G SL+ L++ ++ G+ ALT ++ GL L+L + +I+
Sbjct: 216 IISCINVTDKGLSCLRSGCMSLQKLDVAKCSNVSSRGILALTGISLGLQELNLSYCKKIS 275
Query: 386 D 386
D
Sbjct: 276 D 276
>gi|315301494|ref|ZP_07872641.1| internalin A, partial [Listeria ivanovii FSL F6-596]
gi|313630136|gb|EFR98122.1| internalin A [Listeria ivanovii FSL F6-596]
Length = 759
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 119/360 (33%), Positives = 173/360 (48%), Gaps = 58/360 (16%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+++ ++ S + +TD L L + S L SL N Q++D L L+ L++LT L+ N
Sbjct: 98 NNVTQLNFSYNQITD--LTPLANLSKLTSLVMNNN-QVAD--LTPLQNLTSLTDLTLFYN 152
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGG----LVNLKGLMKLESLNIKWCNCITDSD 172
IT + A L NL L I G L + L LE+L+I N +TD
Sbjct: 153 -KIT--DVTPLANLTNLTTL------AITGNEISDLTPIGSLTNLEALSI--GNQVTD-- 199
Query: 173 MKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
+KPL LTNL+ L +S +K+TD S +A L LQ LTL N + +T L L +L
Sbjct: 200 IKPLDKLTNLEQLNLSDNKITDISPVAKLINLQSLTLDNNQFSDLTP-----LGILTNLT 254
Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
L+L LSD G + + +LK LNL N+I++ L + LTNL LN+ + I D
Sbjct: 255 ELSLYSNHLSDIGT--LASLTNLKKLNLMDNQISN--LAPISNLTNLTDLNVSTNQISD- 309
Query: 292 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS----------- 340
L ++ L NL L++ QV + +S LTNL+ + L ISD S
Sbjct: 310 -LKPISNLTNLTVLQVPTNQV--EDISPISSLTNLDFLTLYSNQISDISPLENLTKLKQL 366
Query: 341 ---------LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
+ LA L++L+ L+ QI+D L L LT LT L L ++T Y
Sbjct: 367 FFYDNKVSDVSPLANLTTLQELSAGTNQISD--LTPLAKLTRLTQLGLDKQKVTSQPVKY 424
>gi|290976088|ref|XP_002670773.1| predicted protein [Naegleria gruberi]
gi|284084335|gb|EFC38029.1| predicted protein [Naegleria gruberi]
Length = 681
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/254 (25%), Positives = 126/254 (49%), Gaps = 25/254 (9%)
Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
L L++ +C I+D ++ +S + LK L +S ++ + + +K +++LT+L++ +
Sbjct: 415 LRRLHVVFCK-ISDREISVISQMKQLKELNVSGNRFSFESVCKIKDMKQLTILDMSYTKL 473
Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 276
++ +S + +L L +N L G E +++ L+ L +G N I DE + + +
Sbjct: 474 KCLDVEVVSGMRNLTSLRINDNDLGIQGAELIAQLDQLRELFIGSNNIGDEGMYSISHMK 533
Query: 277 NLESLNLDSCGIGDEGL---------------VNLTG---------LCNLKCLELSDTQV 312
NL L++ S GIG+EG NL G L L L +++ ++
Sbjct: 534 NLTKLDVSSNGIGEEGANSISQLKGLTFINVGFNLIGQQGAESIGELEQLTTLLINNCEI 593
Query: 313 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 372
G +G + +S + + +++S I D ++ L L L ++ +ITD GL A+T +
Sbjct: 594 GPTGAKFISKMQRVTELDISLNDIQDEGAHYISELEKLSILYVNNNEITDEGLKAITQMK 653
Query: 373 GLTHLDLFGARITD 386
L LD+ G +I+D
Sbjct: 654 NLQLLDVSGNKISD 667
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 62/252 (24%), Positives = 118/252 (46%), Gaps = 12/252 (4%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNF----CIQISDGGL 99
++D+ + VI SQ L +++SG+ + + +KD L LD ++ C+ +
Sbjct: 425 ISDREISVI-SQMKQLKELNVSGNRFSFESVCKIKDMKQLTILDMSYTKLKCLDV----- 478
Query: 100 EHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 159
E + G+ NLTSL +N + QG + A L L +L + G+ ++ + L
Sbjct: 479 EVVSGMRNLTSLRIN-DNDLGIQGAELIAQLDQLRELFIGSNNIGDEGMYSISHMKNLTK 537
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
L++ N I + +S L L + + + + G + L++LT L + C +
Sbjct: 538 LDVS-SNGIGEEGANSISQLKGLTFINVGFNLIGQQGAESIGELEQLTTLLINNCEIGPT 596
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+S + + L+++ + D+G S++ L +L + NEITDE L + + NL+
Sbjct: 597 GAKFISKMQRVTELDISLNDIQDEGAHYISELEKLSILYVNNNEITDEGLKAITQMKNLQ 656
Query: 280 SLNLDSCGIGDE 291
L++ I DE
Sbjct: 657 LLDVSGNKISDE 668
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/234 (23%), Positives = 100/234 (42%), Gaps = 27/234 (11%)
Query: 186 QISCSKVTDSGIAYLKGL---QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
Q V DS K + + L L++ C ++ + +S + L LN++ + S
Sbjct: 392 QTKSFSVVDSAFDRSKSIARCEHLRRLHVVFCKISDREISVISQMKQLKELNVSGNRFSF 451
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD------------------ 284
+ K + L +L++ + ++ + + G+ NL SL ++
Sbjct: 452 ESVCKIKDMKQLTILDMSYTKLKCLDVEVVSGMRNLTSLRINDNDLGIQGAELIAQLDQL 511
Query: 285 ------SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
S IGDEG+ +++ + NL L++S +G G +S L L IN+ F I
Sbjct: 512 RELFIGSNNIGDEGMYSISHMKNLTKLDVSSNGIGEEGANSISQLKGLTFINVGFNLIGQ 571
Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
+ L L +L ++ +I TG ++ + +T LD+ I D GA Y+
Sbjct: 572 QGAESIGELEQLTTLLINNCEIGPTGAKFISKMQRVTELDISLNDIQDEGAHYI 625
>gi|290972196|ref|XP_002668843.1| predicted protein [Naegleria gruberi]
gi|284082373|gb|EFC36099.1| predicted protein [Naegleria gruberi]
Length = 348
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 117/222 (52%), Gaps = 8/222 (3%)
Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
+D++ +S L NLK+L IS + + + G+ + L LT LN+E + + +S L +L
Sbjct: 8 NDVQDISKLVNLKTLNISINNIGNEGLIIVCNLINLTNLNIENNDIGDEGVQDISKLVNL 67
Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
LN+ L G ++ SK+ +L LN+ N + ++ K L S N + I +
Sbjct: 68 TNLNIKSNALRSKGAQEISKLTNLTSLNVAENNV----MLSEKNL----SRNNITHQIEN 119
Query: 291 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 350
+G+ ++ L NL L + + +G G++ +S L NL ++++ I D ++ + L +L
Sbjct: 120 DGIKSIFNLINLTNLNIQNNDIGDEGVQDISKLINLTNLDIGNNKIRDEGIKSIFNLINL 179
Query: 351 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
+LN+ I D G+ ++ L LT+LD+ +I D+GA +
Sbjct: 180 TNLNIQNNDIGDEGVQDISKLINLTNLDICQTKIGDNGAKEI 221
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 70/232 (30%), Positives = 120/232 (51%), Gaps = 18/232 (7%)
Query: 99 LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158
++ + L NL +L+ NN I +G+ LINL L++E G+ ++ L+ L
Sbjct: 10 VQDISKLVNLKTLNISINN-IGNEGLIIVCNLINLTNLNIENNDIGDEGVQDISKLVNLT 68
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
+LNIK N + + +S LTNL SL ++ + V L+ NL +T
Sbjct: 69 NLNIK-SNALRSKGAQEISKLTNLTSLNVAENNVM------------LSEKNLSRNNITH 115
Query: 219 AC----LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 274
+ S+ L +L LN+ + D+G + SK+ +L L++G N+I DE + +
Sbjct: 116 QIENDGIKSIFNLINLTNLNIQNNDIGDEGVQDISKLINLTNLDIGNNKIRDEGIKSIFN 175
Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 326
L NL +LN+ + IGDEG+ +++ L NL L++ T++G +G + + L NL
Sbjct: 176 LINLTNLNIQNNDIGDEGVQDISKLINLTNLDICQTKIGDNGAKEICKLINL 227
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 93/206 (45%), Gaps = 26/206 (12%)
Query: 66 GSDVTD-SGLIHLKDCSNLQSLDFNFCIQ-ISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
G+DV D S L++LK N I I + GL + L NLT+L+ NN I +G
Sbjct: 7 GNDVQDISKLVNLKT--------LNISINNIGNEGLIIVCNLINLTNLNIE-NNDIGDEG 57
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNC---------------I 168
++ + L+NL L+++ G + L L SLN+ N I
Sbjct: 58 VQDISKLVNLTNLNIKSNALRSKGAQEISKLTNLTSLNVAENNVMLSEKNLSRNNITHQI 117
Query: 169 TDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG 228
+ +K + L NL +L I + + D G+ + L LT L++ + + S+ L
Sbjct: 118 ENDGIKSIFNLINLTNLNIQNNDIGDEGVQDISKLINLTNLDIGNNKIRDEGIKSIFNLI 177
Query: 229 SLFYLNLNRCQLSDDGCEKFSKIGSL 254
+L LN+ + D+G + SK+ +L
Sbjct: 178 NLTNLNIQNNDIGDEGVQDISKLINL 203
Score = 39.3 bits (90), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 48/81 (59%), Gaps = 2/81 (2%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
+L ++++ +D+ D G+ + NL +LD +I D G++ + L NLT+L+ +NN
Sbjct: 130 NLTNLNIQNNDIGDEGVQDISKLINLTNLDIGNN-KIRDEGIKSIFNLINLTNLNI-QNN 187
Query: 118 AITAQGMKAFAGLINLVKLDL 138
I +G++ + LINL LD+
Sbjct: 188 DIGDEGVQDISKLINLTNLDI 208
>gi|343419347|emb|CCD19427.1| leucine-rich repeat protein, putative [Trypanosoma vivax Y486]
Length = 1478
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 116/349 (33%), Positives = 174/349 (49%), Gaps = 54/349 (15%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
+DV+ LI SNL++LD + C I+D + L +SNL +L IT +
Sbjct: 624 TDVSPLSLI-----SNLRTLDLSHCTGITD--VSPLSLISNLRTLDLSHCTGIT--DVPP 674
Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD---------------- 170
+ LI L KLDL CT I + L L +LE+LN+ +C ITD
Sbjct: 675 LSMLIRLEKLDLSGCTGI-TDVSPLSKLSRLETLNLMYCTGITDVSPLSKLSRLETLNLM 733
Query: 171 -----SDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
+D+ PLS +++L +L +S C+ +TD ++ L L +L L+L GC + L
Sbjct: 734 YCTGITDVSPLSKMSSLYTLNLSYCTGITD--VSPLSMLIRLETLDLTGC-TGITDVSPL 790
Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNL 283
S L L LNL C D SK+ L+ LNL + ITD + L L+ LE+LNL
Sbjct: 791 SKLSRLETLNLRYCTGITD-VSPLSKLSRLETLNLMYCTGITD--VSPLSKLSRLETLNL 847
Query: 284 DSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSL 341
C GI D ++L NL+ L+LS G + + LS ++NL S+ LS TGI+D +
Sbjct: 848 MYCTGITDVSPLSLIS--NLRTLDLSHC-TGITDVSPLSLMSNLCSLYLSHCTGITD--V 902
Query: 342 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD----LFGARITD 386
L+ L L+ L+L TG+ ++ L+ L+ L+ ++ ITD
Sbjct: 903 PPLSMLIRLEKLDLSGC----TGITDVSPLSKLSRLETLNLMYCTGITD 947
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 105/313 (33%), Positives = 160/313 (51%), Gaps = 28/313 (8%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
S L++L+ +C I+D + L +S+L +L+ IT + + LI L LDL
Sbjct: 725 SRLETLNLMYCTGITD--VSPLSKMSSLYTLNLSYCTGIT--DVSPLSMLIRLETLDLTG 780
Query: 141 CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ-ISCSKVTDSGIAY 199
CT I + L L +LE+LN+++C IT D+ PLS L+ L++L + C+ +TD ++
Sbjct: 781 CTGI-TDVSPLSKLSRLETLNLRYCTGIT--DVSPLSKLSRLETLNLMYCTGITD--VSP 835
Query: 200 LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 259
L L +L LNL C + LS + +L L+L+ C D S + +L L L
Sbjct: 836 LSKLSRLETLNLMYC-TGITDVSPLSLISNLRTLDLSHCTGITD-VSPLSLMSNLCSLYL 893
Query: 260 GF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ--VGSSG 316
ITD + L L LE L+L C G+ +++ L L LE + G +
Sbjct: 894 SHCTGITD--VPPLSMLIRLEKLDLSGC----TGITDVSPLSKLSRLETLNLMYCTGITD 947
Query: 317 LRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGL 374
+ LS L+ LE++NL + TGI+D S L+ LS L++LNL ITD ++ L+ L
Sbjct: 948 VSPLSKLSRLETLNLMYCTGITDVS--PLSKLSRLETLNLMYCTGITD--VSPLSDFINL 1003
Query: 375 THLDL-FGARITD 386
LDL F ITD
Sbjct: 1004 RTLDLSFYTGITD 1016
Score = 74.7 bits (182), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 102/302 (33%), Positives = 156/302 (51%), Gaps = 37/302 (12%)
Query: 77 LKDCSNLQSLDFNFCIQISDGG------------LEHLRGLSNLTSLS-FRRNNAITAQG 123
L D NL++LD +F I+D L ++ G+++++ LS R N + G
Sbjct: 997 LSDFINLRTLDLSFYTGITDVSPLSMLIRLENLSLSNIAGITDVSPLSTLIRLNVLYLSG 1056
Query: 124 ------MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
+ + L +L LDL CT I + L L +LE+LN+ +C IT D+ PLS
Sbjct: 1057 CTGITDVSPLSKLSSLRTLDLSHCTGI-TDVSPLSKLSRLETLNLMYCTGIT--DVSPLS 1113
Query: 178 GLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
++NL++L +S C+ +TD ++ L + L L L C + LS L L L+L+
Sbjct: 1114 LISNLRTLDLSHCTGITD--VSPLSLMSNLCSLYLSHC-TGITDVPPLSMLIRLEKLDLS 1170
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLV 294
C D SK+ L+ LNL + ITD + L ++NL SL L C GI D +
Sbjct: 1171 GCTGITD-VSPLSKLSRLETLNLMYCTGITD--VSPLSLMSNLCSLYLSHCTGITD--VS 1225
Query: 295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSL 353
L+ L L+ L+LS G + + LS L+ LE++NL + TGI+D S L+ LS L++L
Sbjct: 1226 PLSMLIRLEKLDLSGC-TGITDVSPLSKLSRLETLNLMYCTGITDVS--PLSKLSRLETL 1282
Query: 354 NL 355
NL
Sbjct: 1283 NL 1284
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 97/313 (30%), Positives = 150/313 (47%), Gaps = 40/313 (12%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
+ L+ LD + C++ D L H G+++++ LS L +L LDL
Sbjct: 415 ATLRDLDVSKCLRTLD--LSHCTGITDVSPLS----------------ELSSLRTLDLSH 456
Query: 141 CTRIHGGLVNLKGLMKLESL-NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAY 199
CT G+ ++ L KL SL +C +D+ PLS L+ L+ L +S SG+
Sbjct: 457 CT----GITDVSPLSKLSSLRTFDLSHCTGITDVSPLSTLSGLEVLNLSGCTGVASGVDS 512
Query: 200 LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 259
L L+ L L L + A L + L L L+L+ C S + L+VLNL
Sbjct: 513 LCSLRMLRELRLSRLAINDAVLRDIVVLKCLRTLDLSHCT-GITNVSPLSTLSGLEVLNL 571
Query: 260 -GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ--VGSSG 316
G +ITD + L L + +LNL C G+ +++ L L LE + G +
Sbjct: 572 SGCADITD--ISPLSDLNIMHTLNLSFC----TGITDVSPLSKLSRLETLNLMYCTGITD 625
Query: 317 LRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGL 374
+ LS ++NL +++LS TGI+D S L+ +S+L++L+L ITD + L+ L L
Sbjct: 626 VSPLSLISNLRTLDLSHCTGITDVS--PLSLISNLRTLDLSHCTGITD--VPPLSMLIRL 681
Query: 375 THLDLFGAR-ITD 386
LDL G ITD
Sbjct: 682 EKLDLSGCTGITD 694
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 85/283 (30%), Positives = 133/283 (46%), Gaps = 44/283 (15%)
Query: 62 VDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
+DLSG + +TD L S L++L+ +C I+D + L LS L +L+ IT
Sbjct: 1236 LDLSGCTGITDVS--PLSKLSRLETLNLMYCTGITD--VSPLSKLSRLETLNLMYCTGIT 1291
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
+ + + NL L L CT I + L L +LE+LN+ +C IT D+ PLS L+
Sbjct: 1292 --DVSPLSLMSNLCSLYLSHCTGI-TDVPPLSKLSRLETLNLMYCTGIT--DVSPLSKLS 1346
Query: 181 NLKSLQ-ISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 239
L++L + C+ +TD ++ L + L L+L C + LS + +L L L+ C
Sbjct: 1347 RLETLNLMYCTGITD--VSPLSLISNLRTLDLSHC-TGITDVSPLSLMSNLCSLYLSHCT 1403
Query: 240 LSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
D S + L+ +L G ITD + L L+ LE+LNL C
Sbjct: 1404 GITD-VPPLSMLIRLEKSDLSGCTGITD--VSPLSKLSRLETLNLMYC------------ 1448
Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGS 340
G + + LS ++ LE++NL + TGI+D S
Sbjct: 1449 -------------TGITDVSPLSKVSRLETLNLMYCTGITDVS 1478
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 108/388 (27%), Positives = 177/388 (45%), Gaps = 47/388 (12%)
Query: 21 TEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDC 80
+ SL RDC + CLG V+++ + G S L+ L+ ++TD L + C
Sbjct: 217 SHTSLTVGRDCFIP--CLGV---VSEEVL-----AGVSRLT--LNKVELTDRDLWRIHKC 264
Query: 81 SNLQSLDFNFC-------IQISDGG---------LEHLRGLSNLTSLSFRRNNAITAQGM 124
SNL++L C Q+ G E +RG+S L ++ +N + + +
Sbjct: 265 SNLKALSIEECTGRICLGTQMPHGNSPTRENCDDTERVRGISCLEEITI--SNCMNIKEI 322
Query: 125 KAFAGLINLVKLDLERCTRIHGGLVNL---KGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
K L + +L + N+ K +++LE + +C + ++PL+
Sbjct: 323 KGLNTLACISRLRFINSNISDDCVANISENKHILELE-----FQDCANITSLRPLANSQL 377
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
++SL IS +S I L L +L L L + A L L L L+L+ C
Sbjct: 378 IESLVISNCINLESEINVLAALNRLRELRLSRLAINDATLRDLDVSKCLRTLDLSHCTGI 437
Query: 242 DDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGL 299
D S++ SL+ L+L ITD + L L++L + +L C GI D + L+ L
Sbjct: 438 TD-VSPLSELSSLRTLDLSHCTGITD--VSPLSKLSSLRTFDLSHCTGITD--VSPLSTL 492
Query: 300 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 359
L+ L LS +SG+ L L L + LS I+D LR + L L++L+L +
Sbjct: 493 SGLEVLNLSGCTGVASGVDSLCSLRMLRELRLSRLAINDAVLRDIVVLKCLRTLDL-SHC 551
Query: 360 ITDTGLAALTSLTGLTHLDLFG-ARITD 386
T ++ L++L+GL L+L G A ITD
Sbjct: 552 TGITNVSPLSTLSGLEVLNLSGCADITD 579
>gi|195383050|ref|XP_002050239.1| GJ20310 [Drosophila virilis]
gi|194145036|gb|EDW61432.1| GJ20310 [Drosophila virilis]
Length = 542
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 118/371 (31%), Positives = 188/371 (50%), Gaps = 62/371 (16%)
Query: 7 SQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG 66
S +FN LV R + +V + + R +L+DL LG +L S++LSG
Sbjct: 206 SPSLFNCLV-RRGIKKVQILSLRR-SLKDLVLGV----------------PALTSLNLSG 247
Query: 67 S-DVTDSGLIHL--KDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQ 122
+V D L H D NL++LD + C QI+D L + + L NL +L IT
Sbjct: 248 CFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLKNLETLELGGCCNITNT 307
Query: 123 GMKAFA-GLINLVKLDLERCTRIH-GGLVNLKGL--------MKLESLNIKWCNCITDSD 172
G+ A GL L L+L C I G+ +L G ++LE L ++ C ++D
Sbjct: 308 GLLLIAWGLKKLRHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEYLGLQDCQRLSDEA 367
Query: 173 MKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
+ ++ GLT+LKS+ +S C VTDSG+ +L + KL LNL C D++S +G
Sbjct: 368 LGHIAQGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSC-------DNISDIGMA 420
Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHL-KGLTNLESLNLDSCGI 288
+ L++ G S I SL V F ++I+D+ L H+ +GL L SL+L+ C I
Sbjct: 421 Y--------LTEGG----SGINSLDV---SFCDKISDQALTHIAQGLYRLRSLSLNQCQI 465
Query: 289 GDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLS-GLTNLESINL-SFTGISDGSLRKL 344
D+G++ + L L+ L + +++ GL+ L+ L+NL++I+L T +S + +
Sbjct: 466 TDQGMLKIAKSLHELENLNIGQCSRITDKGLQTLAEDLSNLKTIDLYGCTQLSSKGIDII 525
Query: 345 AGLSSLKSLNL 355
L L+ LNL
Sbjct: 526 MKLPKLQKLNL 536
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 99/306 (32%), Positives = 157/306 (51%), Gaps = 35/306 (11%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAF-----AGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
RG+ + LS RR+ G+ A +G N+ ++L H V+L L
Sbjct: 216 RGIKKVQILSLRRSLKDLVLGVPALTSLNLSGCFNVADMNLG-----HAFSVDLPNL--- 267
Query: 158 ESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLK-GLQKLTLLNLEGC 214
++L++ C ITD+ + ++ L NL++L++ C +T++G+ + GL+KL LNL C
Sbjct: 268 KTLDLSLCKQITDTSLGRIAQHLKNLETLELGGCCNITNTGLLLIAWGLKKLRHLNLRSC 327
Query: 215 PVTA-------ACLDSLSALGSL--FYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-N 262
+ A +A G+L YL L CQ LSD+ ++ + SLK +NL F
Sbjct: 328 WHISDQGIGHLAGFSRETAEGNLQLEYLGLQDCQRLSDEALGHIAQGLTSLKSINLSFCV 387
Query: 263 EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRH 319
+TD L HL + LE LNL SC I D G+ LT G + L++S ++ L H
Sbjct: 388 SVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGSGINSLDVSFCDKISDQALTH 447
Query: 320 LS-GLTNLESINLSFTGISDGSLRKLA-GLSSLKSLNL-DARQITDTGLAALTS-LTGLT 375
++ GL L S++L+ I+D + K+A L L++LN+ +ITD GL L L+ L
Sbjct: 448 IAQGLYRLRSLSLNQCQITDQGMLKIAKSLHELENLNIGQCSRITDKGLQTLAEDLSNLK 507
Query: 376 HLDLFG 381
+DL+G
Sbjct: 508 TIDLYG 513
>gi|432862145|ref|XP_004069745.1| PREDICTED: F-box/LRR-repeat protein 14-like [Oryzias latipes]
Length = 403
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 106/314 (33%), Positives = 160/314 (50%), Gaps = 36/314 (11%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFA-----GLINLVKLDLERCTRIHGGLVNLKGLMKL 157
RG+ + LS RR+ + QGM G NL L G ++ + L
Sbjct: 71 RGIKKVQILSLRRSLSYVIQGMPHIESLNLCGCFNLTDNGL--------GHAFVQDIPSL 122
Query: 158 ESLNIKWCNCITDSDMKPLSG-LTNLKSLQI-SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LN+ C ITDS + ++ L NL++L + CS +T++G+ + GL KL LNL C
Sbjct: 123 RLLNLSLCKQITDSSLGRIAQYLKNLEALDLGGCSNITNTGLLLIAWGLHKLKSLNLRSC 182
Query: 215 -PVTAACLDSLSALG--------SLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-N 262
V+ + +S + SL L L CQ L+D + SK + LKVLNL F
Sbjct: 183 RHVSDVGIGHISGMTRSAAEGCLSLEKLTLQDCQKLTDLSLKHVSKGLNKLKVLNLSFCG 242
Query: 263 EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRH 319
I+D ++HL + +L SLNL SC I D G+++L G L L++S ++G L +
Sbjct: 243 GISDAGMIHLSHMAHLCSLNLRSCDNISDTGIMHLAMGSLQLSGLDVSFCDKIGDQSLAY 302
Query: 320 LS-GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALT-SLTGLT 375
++ GL L+S++L ISD + R + + LK+LN+ +ITD GL + LT LT
Sbjct: 303 VAQGLYQLKSLSLCSCHISDDGINRMVRQMHELKTLNIGQCVRITDKGLELIADHLTQLT 362
Query: 376 HLDLFG-ARITDSG 388
+DL+G +IT G
Sbjct: 363 GIDLYGCTKITKRG 376
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 101/308 (32%), Positives = 165/308 (53%), Gaps = 26/308 (8%)
Query: 81 SNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAG-LINLVKLD 137
+++SL+ C ++D GL H ++ + +L L+ IT + A L NL LD
Sbjct: 93 PHIESLNLCGCFNLTDNGLGHAFVQDIPSLRLLNLSLCKQITDSSLGRIAQYLKNLEALD 152
Query: 138 LERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT--------NLKSLQI 187
L C+ I G L+ GL KL+SLN++ C ++D + +SG+T +L+ L +
Sbjct: 153 LGGCSNITNTGLLLIAWGLHKLKSLNLRSCRHVSDVGIGHISGMTRSAAEGCLSLEKLTL 212
Query: 188 S-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDD 243
C K+TD + ++ KGL KL +LNL C ++ A + LS + L LNL C +SD
Sbjct: 213 QDCQKLTDLSLKHVSKGLNKLKVLNLSFCGGISDAGMIHLSHMAHLCSLNLRSCDNISDT 272
Query: 244 GCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGLVNLT-G 298
G + +GSL++ L++ F ++I D+ L ++ +GL L+SL+L SC I D+G+ +
Sbjct: 273 GIMHLA-MGSLQLSGLDVSFCDKIGDQSLAYVAQGLYQLKSLSLCSCHISDDGINRMVRQ 331
Query: 299 LCNLKCLELSD-TQVGSSGLRHLS-GLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNL 355
+ LK L + ++ GL ++ LT L I+L T I+ L ++ L LK LNL
Sbjct: 332 MHELKTLNIGQCVRITDKGLELIADHLTQLTGIDLYGCTKITKRGLERITQLPCLKVLNL 391
Query: 356 DARQITDT 363
Q+TD+
Sbjct: 392 GLWQMTDS 399
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 103/204 (50%), Gaps = 29/204 (14%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ K + L+ L+ +FC ISD G+ HL +++L SL+ R + I+ G+
Sbjct: 218 LTDLSLKHVSKGLNKLKVLNLSFCGGISDAGMIHLSHMAHLCSLNLRSCDNISDTGIMHL 277
Query: 128 A-GLINLVKLDLERCTRI--HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C +I +GL +L+SL++ C+ D + + + LK+
Sbjct: 278 AMGSLQLSGLDVSFCDKIGDQSLAYVAQGLYQLKSLSLCSCHISDDGINRMVRQMHELKT 337
Query: 185 LQI-SCSKVTDSGIAYLK-GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
L I C ++TD G+ + L +LT ++L GC +++
Sbjct: 338 LNIGQCVRITDKGLELIADHLTQLTGIDLYGCT-----------------------KITK 374
Query: 243 DGCEKFSKIGSLKVLNLGFNEITD 266
G E+ +++ LKVLNLG ++TD
Sbjct: 375 RGLERITQLPCLKVLNLGLWQMTD 398
>gi|299066813|emb|CBJ38007.1| leucine-rich-repeat type III effector protein (GALA5) [Ralstonia
solanacearum CMR15]
Length = 457
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 95/318 (29%), Positives = 143/318 (44%), Gaps = 14/318 (4%)
Query: 81 SNLQSLDFNFCI-QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE 139
++L+ LD + C I+ G+ HL L L L+ R N I A+G + A L L++
Sbjct: 63 ASLKELDLSQCRGPITAAGMAHLSRLP-LVRLNVR-NKRIGAKGARLLANHPTLTSLNVS 120
Query: 140 RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAY 199
G L G M+L +LN+ N + + K L+ L+SL +S +++ D G
Sbjct: 121 NNRIGPEGAQALAGNMRLTTLNVS-GNRLGVEEAKALAANQTLRSLDVSDNRIGDEGARV 179
Query: 200 LKGLQKLTLL--NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 257
L +LT L N G V A +L+A +L L + + D G + L L
Sbjct: 180 LAACTQLTTLDANRNGIGVDGAT--ALAACPTLRSLGIGGNAIGDAGVLALAANARLTTL 237
Query: 258 NL---GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 314
N+ G + L K LT L LD GIG+ G L L L L+ ++G+
Sbjct: 238 NVESTGVGAVGVGALAASKALT---WLRLDGNGIGNAGATALAASTRLTTLHLARNKIGA 294
Query: 315 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 374
G + L+ T L +++L + I D +R LA ++L SL + + D L + L
Sbjct: 295 EGAQALAANTKLTTLDLGYNKIGDTGVRALAANATLVSLTVRRNDLKDESAVILAASRTL 354
Query: 375 THLDLFGARITDSGAAYL 392
T LDL G I D GA L
Sbjct: 355 TTLDLSGNGIEDQGAKAL 372
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 100/366 (27%), Positives = 157/366 (42%), Gaps = 38/366 (10%)
Query: 57 SSLLSVDLSG--SDVTDSGLIHLKDCSNLQSLDFNF-CIQISDGGLEHLRGLSNLTSLSF 113
+SL +DLS +T +G+ HL S L + N +I G L LTSL+
Sbjct: 63 ASLKELDLSQCRGPITAAGMAHL---SRLPLVRLNVRNKRIGAKGARLLANHPTLTSLNV 119
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGL---MKLESLNIKWCNCITD 170
NN I +G +A AG + L L++ R+ G+ K L L SL++ N I D
Sbjct: 120 S-NNRIGPEGAQALAGNMRLTTLNVS-GNRL--GVEEAKALAANQTLRSLDVS-DNRIGD 174
Query: 171 SDMKPLSGLTNL------------------------KSLQISCSKVTDSGIAYLKGLQKL 206
+ L+ T L +SL I + + D+G+ L +L
Sbjct: 175 EGARVLAACTQLTTLDANRNGIGVDGATALAACPTLRSLGIGGNAIGDAGVLALAANARL 234
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 266
T LN+E V A + +L+A +L +L L+ + + G + L L+L N+I
Sbjct: 235 TTLNVESTGVGAVGVGALAASKALTWLRLDGNGIGNAGATALAASTRLTTLHLARNKIGA 294
Query: 267 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 326
E L T L +L+L IGD G+ L L L + + L+ L
Sbjct: 295 EGAQALAANTKLTTLDLGYNKIGDTGVRALAANATLVSLTVRRNDLKDESAVILAASRTL 354
Query: 327 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
+++LS GI D + LA +L +L++ + I + G AL + L LDL R+ +
Sbjct: 355 TTLDLSGNGIEDQGAKALAANPTLTTLDVSSNDIKNAGARALAANARLVWLDLRHNRMEE 414
Query: 387 SGAAYL 392
+G L
Sbjct: 415 AGTRAL 420
>gi|300691489|ref|YP_003752484.1| type III effector protein [Ralstonia solanacearum PSI07]
gi|299078549|emb|CBJ51205.2| leucine-rich-repeat type III effector protein (GALA5) [Ralstonia
solanacearum PSI07]
Length = 533
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 94/317 (29%), Positives = 142/317 (44%), Gaps = 13/317 (4%)
Query: 77 LKDCSNLQSLDFNFCIQISDG--GLEHLRGLSN---LTSLSFRRNNAITAQGMKAFAGLI 131
L + L SLD +S+G G E R L++ LT+LS N I A+G KA A
Sbjct: 184 LANHPTLTSLD------VSNGRIGPEGARALADNTRLTTLSVSHNR-IGAEGAKALAASE 236
Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 191
L LD+ G L KL +LN+ N I K L+ L SL I +
Sbjct: 237 TLTSLDISENGIGDEGACALATNTKLTTLNVN-RNRIGVEGAKALAAGEALTSLDIGGND 295
Query: 192 VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI 251
+ D G+ L +LT LN+E V A + +L+A +L L ++ + D G +
Sbjct: 296 IGDEGVRALAANARLTTLNVERTRVGADGVGALAASKTLTSLRIDSNNIGDAGARALATN 355
Query: 252 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 311
SL L++ N I+ L T L +LNL GIGD G + L L +
Sbjct: 356 TSLTTLHIESNGISPAGAQALAANTTLTTLNLGYNGIGDAGAQAWSANTTLISLSVRRNG 415
Query: 312 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 371
+ +G L+ + +++ I D R LA +L +L++ + +I + G AL +
Sbjct: 416 LSDAGATILAASKTMTTLDAGDNTIRDAGARALAANRTLTTLDVRSNEIENAGARALAAN 475
Query: 372 TGLTHLDLFGARITDSG 388
T L LDL R+T++G
Sbjct: 476 TWLASLDLRNNRVTEAG 492
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 84/313 (26%), Positives = 136/313 (43%), Gaps = 4/313 (1%)
Query: 81 SNLQSLDFNFCI-QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE 139
++L LD + C I+ G+ HL L L L+ R + I +G + A L LD+
Sbjct: 139 ASLTELDLSRCRGPITAAGIAHLSHLP-LVRLNVR-DQRIGVEGARLLANHPTLTSLDVS 196
Query: 140 RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAY 199
G L +L +L++ N I K L+ L SL IS + + D G
Sbjct: 197 NGRIGPEGARALADNTRLTTLSVS-HNRIGAEGAKALAASETLTSLDISENGIGDEGACA 255
Query: 200 LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 259
L KLT LN+ + +L+A +L L++ + D+G + L LN+
Sbjct: 256 LATNTKLTTLNVNRNRIGVEGAKALAAGEALTSLDIGGNDIGDEGVRALAANARLTTLNV 315
Query: 260 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 319
+ + + L L SL +DS IGD G L +L L + + +G +
Sbjct: 316 ERTRVGADGVGALAASKTLTSLRIDSNNIGDAGARALATNTSLTTLHIESNGISPAGAQA 375
Query: 320 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
L+ T L ++NL + GI D + + ++L SL++ ++D G L + +T LD
Sbjct: 376 LAANTTLTTLNLGYNGIGDAGAQAWSANTTLISLSVRRNGLSDAGATILAASKTMTTLDA 435
Query: 380 FGARITDSGAAYL 392
I D+GA L
Sbjct: 436 GDNTIRDAGARAL 448
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 86/315 (27%), Positives = 140/315 (44%), Gaps = 9/315 (2%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+L S+D+S + G L D + L +L + +I G + L LTSL
Sbjct: 188 PTLTSLDVSNGRIGPEGARALADNTRLTTLSVSHN-RIGAEGAKALAASETLTSLDIS-E 245
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMK---LESLNIKWCNCITDSDM 173
N I +G A A L L++ R RI G+ K L L SL+I N I D +
Sbjct: 246 NGIGDEGACALATNTKLTTLNVNR-NRI--GVEGAKALAAGEALTSLDIG-GNDIGDEGV 301
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
+ L+ L +L + ++V G+ L + LT L ++ + A +L+ SL L
Sbjct: 302 RALAANARLTTLNVERTRVGADGVGALAASKTLTSLRIDSNNIGDAGARALATNTSLTTL 361
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
++ +S G + + +L LNLG+N I D T L SL++ G+ D G
Sbjct: 362 HIESNGISPAGAQALAANTTLTTLNLGYNGIGDAGAQAWSANTTLISLSVRRNGLSDAGA 421
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
L + L+ D + +G R L+ L ++++ I + R LA + L SL
Sbjct: 422 TILAASKTMTTLDAGDNTIRDAGARALAANRTLTTLDVRSNEIENAGARALAANTWLASL 481
Query: 354 NLDARQITDTGLAAL 368
+L ++T+ G+ AL
Sbjct: 482 DLRNNRVTEAGVRAL 496
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 77/286 (26%), Positives = 130/286 (45%), Gaps = 12/286 (4%)
Query: 114 RRNNAITAQGMKAFA-GLINLVKLDLER-CTRIHGGLVNLK---GLMKLESLNIKWCNCI 168
RR+ + Q ++A + L V+ D+ + R GL +K LE L +
Sbjct: 72 RRSKPLAVQRLRAVSKPLKAAVEADMRQLVIRDRAGLAGVKRAGNYPALEKLTL--IGPF 129
Query: 169 TDSDMKPLSGLTNLKSLQIS-CS-KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 226
TD+D++ L +L L +S C +T +GIA+L L L LN+ + L+
Sbjct: 130 TDNDLRGLPA--SLTELDLSRCRGPITAAGIAHLSHL-PLVRLNVRDQRIGVEGARLLAN 186
Query: 227 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 286
+L L+++ ++ +G + L L++ N I E L L SL++
Sbjct: 187 HPTLTSLDVSNGRIGPEGARALADNTRLTTLSVSHNRIGAEGAKALAASETLTSLDISEN 246
Query: 287 GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG 346
GIGDEG L L L ++ ++G G + L+ L S+++ I D +R LA
Sbjct: 247 GIGDEGACALATNTKLTTLNVNRNRIGVEGAKALAAGEALTSLDIGGNDIGDEGVRALAA 306
Query: 347 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
+ L +LN++ ++ G+ AL + LT L + I D+GA L
Sbjct: 307 NARLTTLNVERTRVGADGVGALAASKTLTSLRIDSNNIGDAGARAL 352
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 83/324 (25%), Positives = 144/324 (44%), Gaps = 6/324 (1%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+ L ++ +S + + G L L SLD + I D G L + LT+L+ RN
Sbjct: 212 TRLTTLSVSHNRIGAEGAKALAASETLTSLDISEN-GIGDEGACALATNTKLTTLNVNRN 270
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
I +G KA A L LD+ G+ L +L +LN++ D + L
Sbjct: 271 R-IGVEGAKALAAGEALTSLDIGGNDIGDEGVRALAANARLTTLNVERTRVGADG-VGAL 328
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ L SL+I + + D+G L LT L++E ++ A +L+A +L LNL
Sbjct: 329 AASKTLTSLRIDSNNIGDAGARALATNTSLTTLHIESNGISPAGAQALAANTTLTTLNLG 388
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
+ D G + +S +L L++ N ++D L + +L+ I D G L
Sbjct: 389 YNGIGDAGAQAWSANTTLISLSVRRNGLSDAGATILAASKTMTTLDAGDNTIRDAGARAL 448
Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
L L++ ++ ++G R L+ T L S++L +++ +R L +L SL +
Sbjct: 449 AANRTLTTLDVRSNEIENAGARALAANTWLASLDLRNNRVTEAGVRALLANRTLSSLGVS 508
Query: 357 AR---QITDTGLAALTSLTGLTHL 377
+ T++ L A + G+T L
Sbjct: 509 FNYCSKPTESALMAWATRNGVTIL 532
>gi|343414367|emb|CCD21012.1| leucine-rich repeat protein, putative [Trypanosoma vivax Y486]
Length = 1699
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 121/354 (34%), Positives = 189/354 (53%), Gaps = 31/354 (8%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNF 90
+L L L G+ D S+ SSL ++DLS + +TD + L + S+L++LD +
Sbjct: 865 SLHTLDLSHCTGITDVSP---LSELSSLRTLDLSHCTGITD--VSPLSELSSLRTLDLSH 919
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN 150
C I+D + L LS+L +L IT + + L +L LDL CT I +
Sbjct: 920 CTGITD--VSPLSELSSLRTLDLSHCTGIT--DVSPLSKLSSLRTLDLSHCTGI-TDVSP 974
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLL 209
L L L +L++ C IT D+ PLS L++L++L +S C+ +TD ++ L L L L
Sbjct: 975 LSELSSLRTLDLSHCTGIT--DVSPLSKLSSLRTLDLSHCTGITD--VSPLSELSSLRTL 1030
Query: 210 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDEC 268
+L C + LS L SL L+L+ C D SK+ SL+ L+L ITD
Sbjct: 1031 DLSHC-TGITDVSPLSELSSLRTLDLSHCTGITD-VSPLSKLSSLRTLDLSHCTGITD-- 1086
Query: 269 LVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 327
+ L L++L +L+L C GI D + L+ L +L+ L+LS G + + LS L++L
Sbjct: 1087 VSPLSELSSLRTLDLSHCTGITD--VSPLSELSSLRTLDLSHC-TGITDVSPLSELSSLR 1143
Query: 328 SINLSF-TGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDL 379
+++LS TGI+D S L+ LSSL++L+L ITD ++ L+ L+ L L+L
Sbjct: 1144 TLDLSHCTGITDVS--PLSELSSLRTLDLSHCTGITD--VSPLSKLSSLCTLEL 1193
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 123/375 (32%), Positives = 190/375 (50%), Gaps = 50/375 (13%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNF 90
+L+ L L G+ D S+ SSL ++DLS + +TD + L S+L++LD +
Sbjct: 1348 SLRTLDLSHCTGITDVSP---LSELSSLRTLDLSHCTGITD--VSPLSKLSSLRTLDLSH 1402
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN 150
C I+D + L LS+L +L IT + + L +L LDL CT I +
Sbjct: 1403 CTGITD--VSPLSVLSSLRTLGLSHCTGIT--DVSPLSELSSLRTLDLSHCTGI-TDVSP 1457
Query: 151 LKGLMKLESLNIKWCNCITD---------------------SDMKPLSGLTNLKSLQIS- 188
L L L +L++ C ITD +D+ PLS L+NL++L +S
Sbjct: 1458 LSELSSLRTLDLSHCTGITDVSPLSVFSSLRTLGLSHCTGITDVSPLSELSNLRTLDLSH 1517
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 248
C+ +TD ++ L L L L+L C + LS L SL L+L+ C D
Sbjct: 1518 CTGITD--VSPLSELSSLRTLDLSHC-TGITDVSPLSELSSLRTLDLSHCTGITD-VSPL 1573
Query: 249 SKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLE 306
SK+ SL+ L+L ITD + L L++L +L+L C GI D + L+ L +L+ L+
Sbjct: 1574 SKLSSLRTLDLSHCTGITD--VSPLSELSSLRTLDLSHCTGITD--VSPLSELSSLRTLD 1629
Query: 307 LSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLN-LDARQITDTG 364
LS G + + LS L++L +++LS TGI+D S L+ LSSL++L+ L ITD
Sbjct: 1630 LSHC-TGITDVSPLSKLSSLRTLDLSHCTGITDVS--PLSELSSLRTLDLLHCTGITD-- 1684
Query: 365 LAALTSLTGLTHLDL 379
++ L+ L+ L LD
Sbjct: 1685 VSPLSELSSLGTLDF 1699
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 101/309 (32%), Positives = 162/309 (52%), Gaps = 27/309 (8%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
L + S+L++LD + C I+D + L S+L +L IT + + +L L
Sbjct: 630 LSELSSLRTLDLSHCTGITD--VSPLSKFSSLHTLDLSHCTGIT--NVSPLSKFSSLRML 685
Query: 137 DLERCTRIHGGLVNLKGLMKLESLN-IKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTD 194
D+ CT G+ N+ L KL SL+ + +C +D+ PLS L++L++L S C+ +T+
Sbjct: 686 DISHCT----GITNVSPLSKLSSLHTLDLSHCTGITDVSPLSKLSSLRTLDFSHCTGITN 741
Query: 195 SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL 254
++ L L L L++ C + LS L SL L+L+ C SKI +L
Sbjct: 742 --VSPLSELSSLRTLDISHC-TGITDVSPLSELSSLRTLDLSHCT-DITNVSPLSKISTL 797
Query: 255 KVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQV 312
+ L+L +TD + L + LE L L C GI D + L+ L +L+ L+LS
Sbjct: 798 QKLDLSHCTGVTD--VSPLSKMIGLEKLYLSHCTGITD--VPPLSELSSLRMLDLSHC-T 852
Query: 313 GSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTS 370
G + + LS L++L +++LS TGI+D S L+ LSSL++L+L ITD ++ L+
Sbjct: 853 GITDVSPLSELSSLHTLDLSHCTGITDVS--PLSELSSLRTLDLSHCTGITD--VSPLSE 908
Query: 371 LTGLTHLDL 379
L+ L LDL
Sbjct: 909 LSSLRTLDL 917
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 120/375 (32%), Positives = 190/375 (50%), Gaps = 51/375 (13%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNF 90
+L+ L L G+ D S+ SSL ++DLS + +TD + L S+L +L+ +
Sbjct: 1141 SLRTLDLSHCTGITDVSP---LSELSSLRTLDLSHCTGITD--VSPLSKLSSLCTLELSH 1195
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN 150
C I+D + L LS+L +L IT + + L N V+LDL CT I +
Sbjct: 1196 CTGITD--VSPLSELSSLRTLDLSHCRGIT--DVSPLSELSNFVQLDLSHCTGI-TDVSP 1250
Query: 151 LKGLMKLESLNIKWCNCITD---------------------SDMKPLSGLTNLKSLQIS- 188
L L L +L++ +C IT+ +D+ PLS L++L++L +S
Sbjct: 1251 LSVLSSLRTLDLSYCTGITNVSPLSNLSSLRSLDLSHCTGITDVSPLSELSSLRTLDLSH 1310
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 248
C + + ++ L L L +LNL C + LS L SL L+L+ C D
Sbjct: 1311 CRGI--ANVSPLSNLSSLRMLNLSHC-TGITDVSPLSVLSSLRTLDLSHCTGITD-VSPL 1366
Query: 249 SKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLE 306
S++ SL+ L+L ITD + L L++L +L+L C GI D + L+ L +L+ L
Sbjct: 1367 SELSSLRTLDLSHCTGITD--VSPLSKLSSLRTLDLSHCTGITD--VSPLSVLSSLRTLG 1422
Query: 307 LSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLD-ARQITD-T 363
LS G + + LS L++L +++LS TGI+D S L+ LSSL++L+L ITD +
Sbjct: 1423 LSHC-TGITDVSPLSELSSLRTLDLSHCTGITDVS--PLSELSSLRTLDLSHCTGITDVS 1479
Query: 364 GLAALTSLT--GLTH 376
L+ +SL GL+H
Sbjct: 1480 PLSVFSSLRTLGLSH 1494
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 105/318 (33%), Positives = 162/318 (50%), Gaps = 45/318 (14%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA-QGMKAFAGLINLVK 135
L + S+L++LD + C G+ ++ LSNL+SL + T + + L +L
Sbjct: 1297 LSELSSLRTLDLSHC-----RGIANVSPLSNLSSLRMLNLSHCTGITDVSPLSVLSSLRT 1351
Query: 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTD 194
LDL CT I + L L L +L++ C ITD + PLS L++L++L +S C+ +TD
Sbjct: 1352 LDLSHCTGI-TDVSPLSELSSLRTLDLSHCTGITD--VSPLSKLSSLRTLDLSHCTGITD 1408
Query: 195 SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL 254
++ L L L L L C + LS L SL L+L+ C D S++ SL
Sbjct: 1409 --VSPLSVLSSLRTLGLSHC-TGITDVSPLSELSSLRTLDLSHCTGITD-VSPLSELSSL 1464
Query: 255 KVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQV 312
+ L+L ITD + L ++L +L L C GI D + L+ L NL+ L+LS
Sbjct: 1465 RTLDLSHCTGITD--VSPLSVFSSLRTLGLSHCTGITD--VSPLSELSNLRTLDLS---- 1516
Query: 313 GSSGLRHLSGLTN---------LESINLSF-TGISDGSLRKLAGLSSLKSLNLD-ARQIT 361
H +G+T+ L +++LS TGI+D S L+ LSSL++L+L IT
Sbjct: 1517 ------HCTGITDVSPLSELSSLRTLDLSHCTGITDVS--PLSELSSLRTLDLSHCTGIT 1568
Query: 362 DTGLAALTSLTGLTHLDL 379
D ++ L+ L+ L LDL
Sbjct: 1569 D--VSPLSKLSSLRTLDL 1584
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 104/317 (32%), Positives = 159/317 (50%), Gaps = 25/317 (7%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
D+ D L L L++LD + C I+D L L LS L +L IT +
Sbjct: 345 DINDVTLRDLDGNECLRTLDLSHCTGITDVSL--LSKLSGLHTLGLSHCTGIT--DVSPL 400
Query: 128 AGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
+ L L L L CT I + L L L +L + C IT D+ PLS ++L++L I
Sbjct: 401 SNLSGLRMLGLSHCTGI-TDVSPLSELSSLRTLGLSHCTGIT--DVSPLSVFSSLRTLGI 457
Query: 188 S-CSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 245
S C+ +TD S ++ + GLQKL L + G +T + LSAL S L+L+ C D
Sbjct: 458 SHCTGITDVSPLSKMNGLQKLYLSHCTG--ITD--VPPLSALSSFEKLDLSHCTGITD-V 512
Query: 246 EKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLK 303
S + SL+ L++ ITD + L + L+ L L C GI D + L+ L + +
Sbjct: 513 SPLSVLSSLRTLDISHCTGITD--VSPLSKMNGLQKLYLSHCTGITD--VPPLSALSSFE 568
Query: 304 CLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDARQITD 362
L+LS G + + LS L++L +++LS TGI++ S L SSL+ L++ +
Sbjct: 569 KLDLSHC-TGITDVSPLSKLSSLHTLDLSHCTGITNVS--PLLKFSSLRMLDI-SHCTGI 624
Query: 363 TGLAALTSLTGLTHLDL 379
T ++ L+ L+ L LDL
Sbjct: 625 TNVSPLSELSSLRTLDL 641
>gi|290994522|ref|XP_002679881.1| leucine rich repeat protein [Naegleria gruberi]
gi|284093499|gb|EFC47137.1| leucine rich repeat protein [Naegleria gruberi]
Length = 340
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 74/245 (30%), Positives = 121/245 (49%), Gaps = 2/245 (0%)
Query: 153 GLMK-LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
G MK L L+I+ C+ I D K +S L L L IS + + G YL L +LT L +
Sbjct: 96 GKMKQLTFLDIRNCSMIDDKGAKYVSALNQLTFLNISQNNIGPEGAKYLSKLDQLTNLKI 155
Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS-LKVLNLGFNEITDECLV 270
+ S+S + L LN++ + +G + S+I S L +L++ N+I++E L
Sbjct: 156 NSNEIGPEGAKSISDMKQLTTLNISNNMIGMEGAKSISEISSQLTILDISSNQISNEGLK 215
Query: 271 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 330
+ ++ L SL+ + IGD+G L+ L NL+ L++S V +G +S L L ++N
Sbjct: 216 FISEMSQLTSLDTNGNNIGDKGAKYLSELKNLRVLDISKNFVYDNGADLISKLPQLTNLN 275
Query: 331 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 390
+SF I + L+ + L LN+ I G L + LT L++ ++ S A
Sbjct: 276 ISFNEIGNQGAIYLSKMEKLTILNISNNLIGPAGAKYLGEMQQLTKLNINRNYLSVSELA 335
Query: 391 YLRSK 395
L K
Sbjct: 336 LLNKK 340
>gi|332030619|gb|EGI70307.1| F-box/LRR-repeat protein 14 [Acromyrmex echinatior]
Length = 837
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 99/311 (31%), Positives = 157/311 (50%), Gaps = 63/311 (20%)
Query: 57 SSLLSVDLSG-SDVTDSGLIHL--KDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLS 112
+L +++LSG ++TDSG+ + ++ +L L+ + C Q++D L + + L NL L
Sbjct: 502 PNLEALNLSGCYNITDSGITNAFCQEYPSLIELNLSLCKQVTDTSLSRIAQFLKNLEHLE 561
Query: 113 FRRNNAITAQGMKAFA-GLINLVKLDLERCTRIHG-GLVNLKGL--------MKLESLNI 162
IT G+ A GL L +LDL C + G+ +L GL + LE L++
Sbjct: 562 LGGCCNITNTGLLLIAWGLKKLKRLDLRSCWHVSDLGIAHLAGLNRETADGNLALEHLSL 621
Query: 163 KWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 220
+ C ++D ++ +S GLT LKS+ +S C +TDSG+ +L + L LNL C
Sbjct: 622 QDCQRLSDEALRHVSLGLTTLKSINLSFCVCITDSGVKHLARMSSLRELNLRSC------ 675
Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHL-KGLTNL 278
D++S +G + YL E S+I SL V F ++I D+ LVH+ +GL NL
Sbjct: 676 -DNISDIG-MAYL-----------AEGGSRITSLDV---SFCDKIGDQALVHISQGLFNL 719
Query: 279 ESLNLDSCGIGDEGLVNLT------GLC----------------NLKCLELSD-TQVGSS 315
+SL+L +C I DEG+ + G C NLKC++L T++ +S
Sbjct: 720 KSLSLSACQISDEGICKIALETLNIGQCSRLTDRGLHTVAESMKNLKCIDLYGCTKITTS 779
Query: 316 GLRHLSGLTNL 326
GL + L L
Sbjct: 780 GLERIMKLPQL 790
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 86/278 (30%), Positives = 142/278 (51%), Gaps = 38/278 (13%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNL--KGLMKLES 159
RG+ + LS RR + G+ NL L+L C I G+ N + L
Sbjct: 480 RGVKKVQVLSLRRGLS------DVLKGVPNLEALNLSGCYNITDSGITNAFCQEYPSLIE 533
Query: 160 LNIKWCNCITDSDMKPLSG-LTNLKSLQIS-CSKVTDSGIAYLK-GLQKLTLLNLEGCPV 216
LN+ C +TD+ + ++ L NL+ L++ C +T++G+ + GL+KL L+L C
Sbjct: 534 LNLSLCKQVTDTSLSRIAQFLKNLEHLELGGCCNITNTGLLLIAWGLKKLKRLDLRSCW- 592
Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE---ITDECLVHLK 273
+S LG LNR + +D G+L + +L + ++DE L H+
Sbjct: 593 ------HVSDLGIAHLAGLNR-ETAD---------GNLALEHLSLQDCQRLSDEALRHVS 636
Query: 274 -GLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLEL-SDTQVGSSGLRHLS-GLTNLESI 329
GLT L+S+NL C I D G+ +L + +L+ L L S + G+ +L+ G + + S+
Sbjct: 637 LGLTTLKSINLSFCVCITDSGVKHLARMSSLRELNLRSCDNISDIGMAYLAEGGSRITSL 696
Query: 330 NLSF-TGISDGSLRKLA-GLSSLKSLNLDARQITDTGL 365
++SF I D +L ++ GL +LKSL+L A QI+D G+
Sbjct: 697 DVSFCDKIGDQALVHISQGLFNLKSLSLSACQISDEGI 734
>gi|283781267|ref|YP_003372022.1| hypothetical protein Psta_3501 [Pirellula staleyi DSM 6068]
gi|283439720|gb|ADB18162.1| hypothetical protein Psta_3501 [Pirellula staleyi DSM 6068]
Length = 436
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 86/306 (28%), Positives = 143/306 (46%), Gaps = 17/306 (5%)
Query: 94 ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTR----IHGGLV 149
+SD LS+L LS N IT +G++ L + +R ++G
Sbjct: 102 VSDEVFARSVALSDLQFLSIYETN-ITNEGLQVLRKFSKLRSFSVAPVSRYEKSMYGAPQ 160
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL 209
+K S K IT ++PL + ++SLQ+ +++ S +A L+ KL +
Sbjct: 161 WSYPFLKQRSDRPK----ITVQGLEPLRNIATIESLQLIDAQLAPSDLAILQSWPKLGSI 216
Query: 210 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
L +T+ + L+A + L L +++ D + SLK L L +++ + L
Sbjct: 217 ALSTT-MTSEAVQHLAACKRVSNLTLGYREITADEIRALGEWESLKKLMLLHAKLSSDAL 275
Query: 270 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 329
L L +LE L+L+ C + D+ L +L L L L ++ GLRHL L+ I
Sbjct: 276 AALASLESLEQLDLEECNLTDDDLAHLKLPAKLTILGLKRNEIDGPGLRHLVPF-QLKQI 334
Query: 330 NLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGAR----I 384
L F IS+ +L +LA L +L++LNL RQI + G+ + L +TH+ G R +
Sbjct: 335 GLEFNNISNATLGELAQLRTLETLNLSYCRQIDNQGIES-GVLQRMTHVRQLGLRGLKQV 393
Query: 385 TDSGAA 390
TD+ A
Sbjct: 394 TDASLA 399
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 91/214 (42%), Gaps = 26/214 (12%)
Query: 205 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE---KFSKIGSLKVLNLGF 261
+L L L G V+ AL L +L++ ++++G + KFSK+ S V +
Sbjct: 91 QLAHLGLWGEGVSDEVFARSVALSDLQFLSIYETNITNEGLQVLRKFSKLRSFSVAPVSR 150
Query: 262 NE----------------------ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 299
E IT + L L+ + +ESL L + L L
Sbjct: 151 YEKSMYGAPQWSYPFLKQRSDRPKITVQGLEPLRNIATIESLQLIDAQLAPSDLAILQSW 210
Query: 300 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 359
L + LS T + S ++HL+ + ++ L + I+ +R L SLK L L +
Sbjct: 211 PKLGSIALSTT-MTSEAVQHLAACKRVSNLTLGYREITADEIRALGEWESLKKLMLLHAK 269
Query: 360 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
++ LAAL SL L LDL +TD A+L+
Sbjct: 270 LSSDALAALASLESLEQLDLEECNLTDDDLAHLK 303
Score = 46.6 bits (109), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 57/239 (23%), Positives = 102/239 (42%), Gaps = 37/239 (15%)
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS--FRRNNA 118
S+ LS + +T + HL C + +L + +D +R L SL +
Sbjct: 215 SIALS-TTMTSEAVQHLAACKRVSNLTLGYREITAD----EIRALGEWESLKKLMLLHAK 269
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
+++ + A A L +L +LDLE C +TD D+ L
Sbjct: 270 LSSDALAALASLESLEQLDLEECN-------------------------LTDDDLAHLKL 304
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
L L + +++ G+ +L Q L + LE ++ A L L+ L +L LNL+ C
Sbjct: 305 PAKLTILGLKRNEIDGPGLRHLVPFQ-LKQIGLEFNNISNATLGELAQLRTLETLNLSYC 363
Query: 239 -QLSDDGCEK--FSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
Q+ + G E ++ ++ L L G ++TD L + +T+L+ + + GI E +
Sbjct: 364 RQIDNQGIESGVLQRMTHVRQLGLRGLKQVTDASLAEIVKMTHLKHITIRETGISWESV 422
>gi|18568221|gb|AAL75965.1|AF467461_1 PpaA [Danio rerio]
Length = 386
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 104/312 (33%), Positives = 162/312 (51%), Gaps = 32/312 (10%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + G ++ + L
Sbjct: 63 RGIKKVQILSLRRSLSYVIQGMP------NIESLNLSGCYNLTDNGLGHAFVQDIPSLRI 116
Query: 160 LNIKWCNCITDSDMKPLSG-LTNLKSLQI-SCSKVTDSGIAYLK-GLQKLTLLNLEGC-P 215
LN+ C ITDS + ++ L NL+ L + CS +T++G+ + GL L LNL C
Sbjct: 117 LNLSLCKQITDSSLGRIAQYLKNLELLDLGGCSNITNTGLLLIAWGLHNLKSLNLRSCRH 176
Query: 216 VTAACLDSLSALG--------SLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-NEI 264
V+ + L+ + +L +L L CQ L+D + SK + LK LNL F I
Sbjct: 177 VSDVGIGHLAGMTRSAAEGCLTLEHLTLQDCQKLTDLSLKHISKGLNKLKGLNLSFCGGI 236
Query: 265 TDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRHLS 321
+D ++HL +T L +LNL SC I D G+++L+ G L L++S +VG L +++
Sbjct: 237 SDAGMIHLSHMTQLWTLNLRSCDNISDTGIMHLSMGALRLYGLDVSFCDKVGDQSLAYIA 296
Query: 322 -GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALT-SLTGLTHL 377
GL L+S++L ISD + R + + LK+LN+ +ITD GL + LT LT +
Sbjct: 297 QGLYQLKSLSLCSCHISDDGINRMVRQMHELKTLNIGQCVRITDKGLELIADHLTQLTGI 356
Query: 378 DLFG-ARITDSG 388
DL+G +IT G
Sbjct: 357 DLYGCTKITKRG 368
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 102/320 (31%), Positives = 166/320 (51%), Gaps = 50/320 (15%)
Query: 61 SVDLSG-SDVTDSGLIH--LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
S++LSG ++TD+GL H ++D +L+ L+ + C QI+D L +
Sbjct: 89 SLNLSGCYNLTDNGLGHAFVQDIPSLRILNLSLCKQITDSSLGRI--------------- 133
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRI--HGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
AQ +K NL LDL C+ I G L+ GL L+SLN++ C ++D +
Sbjct: 134 ---AQYLK------NLELLDLGGCSNITNTGLLLIAWGLHNLKSLNLRSCRHVSDVGIGH 184
Query: 176 LSGLTN--------LKSLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSL 224
L+G+T L+ L + C K+TD + ++ KGL KL LNL C ++ A + L
Sbjct: 185 LAGMTRSAAEGCLTLEHLTLQDCQKLTDLSLKHISKGLNKLKGLNLSFCGGISDAGMIHL 244
Query: 225 SALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLE 279
S + L+ LNL C +SD G S +G+L++ L++ F +++ D+ L ++ +GL L+
Sbjct: 245 SHMTQLWTLNLRSCDNISDTGIMHLS-MGALRLYGLDVSFCDKVGDQSLAYIAQGLYQLK 303
Query: 280 SLNLDSCGIGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLS-GLTNLESINL-SFTG 335
SL+L SC I D+G+ + + LK L + ++ GL ++ LT L I+L T
Sbjct: 304 SLSLCSCHISDDGINRMVRQMHELKTLNIGQCVRITDKGLELIADHLTQLTGIDLYGCTK 363
Query: 336 ISDGSLRKLAGLSSLKSLNL 355
I+ L ++ L LK NL
Sbjct: 364 ITKRGLERITQLPCLKVFNL 383
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 87/278 (31%), Positives = 137/278 (49%), Gaps = 33/278 (11%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEH 101
+ D + IA +L +DL G S++T++GL+ + NL+SL+ C +SD G+ H
Sbjct: 125 ITDSSLGRIAQYLKNLELLDLGGCSNITNTGLLLIAWGLHNLKSLNLRSCRHVSDVGIGH 184
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNL-KGLMKLES 159
L G++ A G + L L L+ C ++ L ++ KGL KL+
Sbjct: 185 LAGMTR-----------------SAAEGCLTLEHLTLQDCQKLTDLSLKHISKGLNKLKG 227
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK-GLQKLTLLNLEGCPVT 217
LN+ +C I+D+ M LS +T L +L + SC ++D+GI +L G +L L++ C
Sbjct: 228 LNLSFCGGISDAGMIHLSHMTQLWTLNLRSCDNISDTGIMHLSMGALRLYGLDVSFCDKV 287
Query: 218 AACLDSLSALGSLFY----LNLNRCQLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVH 271
SL+ + Y L+L C +SDDG + + + LK LN+G ITD+ L
Sbjct: 288 GD--QSLAYIAQGLYQLKSLSLCSCHISDDGINRMVRQMHELKTLNIGQCVRITDKGLEL 345
Query: 272 LK-GLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLEL 307
+ LT L ++L C I GL +T L LK L
Sbjct: 346 IADHLTQLTGIDLYGCTKITKRGLERITQLPCLKVFNL 383
>gi|332661885|ref|YP_004451355.1| small GTP-binding protein [Haliscomenobacter hydrossis DSM 1100]
gi|332337382|gb|AEE54482.1| small GTP-binding protein [Haliscomenobacter hydrossis DSM 1100]
Length = 1141
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 102/294 (34%), Positives = 153/294 (52%), Gaps = 26/294 (8%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
Q+SD L LS L++LSF + + T + ++ + R T L +L+
Sbjct: 191 QVSD-----LDALSALSNLSF-LDLSFTQVSDLSGLSTLSNLSSLNLRDT-YSSDLRSLR 243
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
L+ L L + SD+ L+ L NL SL +S ++V+D ++ L L L+ L+L
Sbjct: 244 PLINLSDLKLSSTEV---SDLSVLAHLHNLSSLHLSYTQVSD--LSALSALSNLSFLDLS 298
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
V+ L +LSAL +L +LNL+ Q+SD + +L +++L E+TD L L
Sbjct: 299 DTQVSD--LSALSALYNLSFLNLSNTQISD--LSALRHLLNLSIIDLSSTELTD--LTTL 352
Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 332
+ L NL S+NL+ D L L+ L NL L LSDTQ +S L LS L NL S+NLS
Sbjct: 353 RHLQNLNSINLNKTHASD--LSALSNLSNLSELYLSDTQ--ASDLSALSALFNLNSLNLS 408
Query: 333 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
+T +S L LA L +L SL+L ++ D L+ L +L L+ LDL + D
Sbjct: 409 YTQVS--GLSALANLQNLSSLDLGDTEVFD--LSPLANLQNLSSLDLSDTEVVD 458
>gi|386333663|ref|YP_006029833.1| type III effector gala6 protein [Ralstonia solanacearum Po82]
gi|334196112|gb|AEG69297.1| type III effector gala6 protein [Ralstonia solanacearum Po82]
Length = 629
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 131/438 (29%), Positives = 185/438 (42%), Gaps = 53/438 (12%)
Query: 2 LPRDISQQIFNEL--VYSRCLTEVSLE------------AFRDCALQDLCLGQYPGVNDK 47
LP ++ QQI + R + EV+ E R+ A+ LG+YP +
Sbjct: 91 LPPELWQQIGSSAGARPRRAMREVNRELRNASRAVVTHLTIRNPAMFG-QLGKYPALKSV 149
Query: 48 W------MDVIASQGSSLLSVDLS---GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGG 98
++ + + + +D+S GS V+++GL L L+SL N I+I G
Sbjct: 150 RFKGALTLEALKALPPGVEHLDISRCTGSGVSNAGLALLA-TRPLKSLSLN-GIEIDAEG 207
Query: 99 LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158
L ++LTSLS +I + A A ++ LDL G L G L
Sbjct: 208 ARLLATCTSLTSLSLT-GCSIGDRAATALARSRSIASLDLSVNMIGPDGARALAG-APLA 265
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
SLN+ N I D L+ LKSL S + + D+G+ LT LNL G +
Sbjct: 266 SLNLH-NNGIGDEGALALATSGTLKSLNASNNGIGDAGVLGFADNAVLTQLNLAGNMIGP 324
Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD---ECLVH---- 271
A +L SL L+L+ +L D G + + SL LNL NEI D E L
Sbjct: 325 AGARALRCNTSLTELDLSTNRLGDAGAQVLAANRSLTSLNLRHNEIGDDGTEALARNTTL 384
Query: 272 -----------------LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 314
L G T L L+L C I G L +L L L ++G
Sbjct: 385 KSLNLSYNPIGFWGAGALGGSTTLRELDLRCCAIDPYGASALARNTSLASLHLGSNRIGD 444
Query: 315 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 374
SG R ++ L ++LS I D + LAG SL SLNL ++ D G AAL L
Sbjct: 445 SGARAIATSRTLTLLDLSRNNIHDAGAQALAGNGSLTSLNLYGNEVDDDGAAALAHHPRL 504
Query: 375 THLDLFGARITDSGAAYL 392
T L+L RI +GA +L
Sbjct: 505 TSLNLGRNRIGPNGAQHL 522
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 96/340 (28%), Positives = 148/340 (43%), Gaps = 4/340 (1%)
Query: 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
G+ L S++L + + D G + L L+SL+ + I D G+ + LT L+
Sbjct: 261 GAPLASLNLHNNGIGDEGALALATSGTLKSLNASNN-GIGDAGVLGFADNAVLTQLNLA- 318
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
N I G +A +L +LDL G L L SLN++ N I D +
Sbjct: 319 GNMIGPAGARALRCNTSLTELDLSTNRLGDAGAQVLAANRSLTSLNLRH-NEIGDDGTEA 377
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
L+ T LKSL +S + + G L G L L+L C + +L+ SL L+L
Sbjct: 378 LARNTTLKSLNLSYNPIGFWGAGALGGSTTLRELDLRCCAIDPYGASALARNTSLASLHL 437
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
++ D G + +L +L+L N I D L G +L SLNL + D+G
Sbjct: 438 GSNRIGDSGARAIATSRTLTLLDLSRNNIHDAGAQALAGNGSLTSLNLYGNEVDDDGAAA 497
Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355
L L L L ++G +G +HL+ L ++LS I L+ + L +LN+
Sbjct: 498 LAHHPRLTSLNLGRNRIGPNGAQHLAKSATLTELDLSENRIGPEGADALSLSTVLTTLNV 557
Query: 356 DARQITDTGLAALTSL-TGLTHLDLFGARITDSGAAYLRS 394
I + G A T LT LD + ++GA L +
Sbjct: 558 SDNAIGEKGARAFAEKSTSLTSLDARNNGMGEAGAKMLEA 597
>gi|290993458|ref|XP_002679350.1| leucine rich repeat protein [Naegleria gruberi]
gi|284092966|gb|EFC46606.1| leucine rich repeat protein [Naegleria gruberi]
Length = 528
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 98/345 (28%), Positives = 158/345 (45%), Gaps = 49/345 (14%)
Query: 52 IASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSL 111
I S+ SL +D+ +D+ GL+ + +LQ+L N I I E L + NLT L
Sbjct: 218 IISRLKSLTFLDIGNNDLGPLGLLPISSMESLQTLHINR-IWIESESCESLTKMINLTEL 276
Query: 112 SFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDS 171
+N+ +G+K + + NL LD+ + I + + D
Sbjct: 277 YISKND-FGNEGLKWISSMKNLRVLDIGNHSII---------------------DALGDE 314
Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
K ++ LT L L IS ++T SG YL L KLT L ++G + LDS+S+L L
Sbjct: 315 AAKLVASLTQLTYLNISQHEITSSGAKYLTSLTKLTTLFIDGNEICDDFLDSISSLKELT 374
Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
YLN++ Q+S G + SK+ L +L++ EC+ G E
Sbjct: 375 YLNISGGQISVKGVKSISKLPRLTILDIS------ECV-----------------GCCSE 411
Query: 292 GLVNLTGLCNLKCLELSDTQVGSS--GLRHL-SGLTNLESINLSFTGISDGSLRKLAGLS 348
L L + L L LS T + S G ++ L NL + ++F G+ D +++ ++GL
Sbjct: 412 VLKQLGLMKQLTSLHLSLTDLVESVEGFKYWHKNLINLTYLEMNFCGLDDNAIKWISGLP 471
Query: 349 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
+LK L+L + +TD + L + L +L LFG +T+ L
Sbjct: 472 NLKYLDLQSNDLTDDCIQHLLGMKKLEYLSLFGNNMTEKKTKRLE 516
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 68/267 (25%), Positives = 130/267 (48%), Gaps = 30/267 (11%)
Query: 152 KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
K L L++ NC + +K L L +L L +S +K + G+ Y+ ++ LT LN+
Sbjct: 125 KRFYNLRELDLSGQNCYREG-VKCLKSLKHLTVLNVSKTKCAN-GVKYIGMIENLTSLNI 182
Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 271
+ ++ LS+L L L++N C L+ + + S++ SL L++G N++ L+
Sbjct: 183 SSVHLENQDVEHLSSLKKLTSLDVNNCNLTFEDADIISRLKSLTFLDIGNNDLGPLGLLP 242
Query: 272 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 331
+ + +L++L+++ I E +LT + NL L +S G+ GL+ +S + NL +++
Sbjct: 243 ISSMESLQTLHINRIWIESESCESLTKMINLTELYISKNDFGNEGLKWISSMKNLRVLDI 302
Query: 332 SFTGISDG----SLRKLAGLSSLKSLNLDARQITDTG----------------------- 364
I D + + +A L+ L LN+ +IT +G
Sbjct: 303 GNHSIIDALGDEAAKLVASLTQLTYLNISQHEITSSGAKYLTSLTKLTTLFIDGNEICDD 362
Query: 365 -LAALTSLTGLTHLDLFGARITDSGAA 390
L +++SL LT+L++ G +I+ G
Sbjct: 363 FLDSISSLKELTYLNISGGQISVKGVK 389
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 89/331 (26%), Positives = 148/331 (44%), Gaps = 41/331 (12%)
Query: 83 LQSLDFNFCI----QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL 138
+ + FNF I + H + + + L + N I K F NL +LDL
Sbjct: 79 MTRIKFNFRISERREWKKLSQSHQKYIDRVECLHLKYNLLIFTIIQKRFY---NLRELDL 135
Query: 139 --ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG 196
+ C R G+ LK L L LN+ C + +K + + NL SL IS + +
Sbjct: 136 SGQNCYR--EGVKCLKSLKHLTVLNVSKTKCA--NGVKYIGMIENLTSLNISSVHLENQD 191
Query: 197 IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL----------------------- 233
+ +L L+KLT L++ C +T D +S L SL +L
Sbjct: 192 VEHLSSLKKLTSLDVNNCNLTFEDADIISRLKSLTFLDIGNNDLGPLGLLPISSMESLQT 251
Query: 234 -NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI---- 288
++NR + + CE +K+ +L L + N+ +E L + + NL L++ + I
Sbjct: 252 LHINRIWIESESCESLTKMINLTELYISKNDFGNEGLKWISSMKNLRVLDIGNHSIIDAL 311
Query: 289 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 348
GDE + L L L +S ++ SSG ++L+ LT L ++ + I D L ++ L
Sbjct: 312 GDEAAKLVASLTQLTYLNISQHEITSSGAKYLTSLTKLTTLFIDGNEICDDFLDSISSLK 371
Query: 349 SLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
L LN+ QI+ G+ +++ L LT LD+
Sbjct: 372 ELTYLNISGGQISVKGVKSISKLPRLTILDI 402
Score = 43.1 bits (100), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 76/161 (47%), Gaps = 4/161 (2%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
+I D L+ + L LT L+ I+ +G+K+ + L L LD+ C ++
Sbjct: 358 EICDDFLDSISSLKELTYLNIS-GGQISVKGVKSISKLPRLTILDISECVGCCSEVLKQL 416
Query: 153 GLMK-LESLNIKWCNCITDSD--MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL 209
GLMK L SL++ + + + L NL L+++ + D+ I ++ GL L L
Sbjct: 417 GLMKQLTSLHLSLTDLVESVEGFKYWHKNLINLTYLEMNFCGLDDNAIKWISGLPNLKYL 476
Query: 210 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 250
+L+ +T C+ L + L YL+L +++ ++ K
Sbjct: 477 DLQSNDLTDDCIQHLLGMKKLEYLSLFGNNMTEKKTKRLEK 517
>gi|290976253|ref|XP_002670855.1| predicted protein [Naegleria gruberi]
gi|284084418|gb|EFC38111.1| predicted protein [Naegleria gruberi]
Length = 286
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 112/228 (49%)
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
CN + D +S L SL + +++ +G + +++LT LN++ V S+
Sbjct: 11 CNQLGDESAHKISQFKQLTSLGVENNEIGPTGAKSISTMKQLTSLNIKNNSVGVEGAHSI 70
Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284
S + L +L+++ + D+G + ++ L LN+ +N+IT ++ K + L LN+
Sbjct: 71 SNMTRLTHLDISLNNIGDEGAKIICQLKQLTNLNISYNQITSNGMIPFKEMKQLIILNVG 130
Query: 285 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 344
S IG+EG+ N++GL L L++ G+ G + +S LTNL + I + + +
Sbjct: 131 SNRIGNEGIENISGLSQLTELDIGGCDFGNEGAKSISQLTNLTCLYCCSNNIREEGAKSI 190
Query: 345 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
+ L + LNL + G ++ + LTHL + I D GA L
Sbjct: 191 SQLEKVTCLNLCVNYLHADGAKHISQMKQLTHLYMDSNEIGDDGAEDL 238
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 70/271 (25%), Positives = 121/271 (44%), Gaps = 2/271 (0%)
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW 164
+S LT LS N + + + L L +E G ++ + +L SLNIK
Sbjct: 1 MSQLTELSLECN-QLGDESAHKISQFKQLTSLGVENNEIGPTGAKSISTMKQLTSLNIKN 59
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
N + +S +T L L IS + + D G + L++LT LN+ +T+ +
Sbjct: 60 -NSVGVEGAHSISNMTRLTHLDISLNNIGDEGAKIICQLKQLTNLNISYNQITSNGMIPF 118
Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284
+ L LN+ ++ ++G E S + L L++G + +E + LTNL L
Sbjct: 119 KEMKQLIILNVGSNRIGNEGIENISGLSQLTELDIGGCDFGNEGAKSISQLTNLTCLYCC 178
Query: 285 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 344
S I +EG +++ L + CL L + + G +H+S + L + + I D L
Sbjct: 179 SNNIREEGAKSISQLEKVTCLNLCVNYLHADGAKHISQMKQLTHLYMDSNEIGDDGAEDL 238
Query: 345 AGLSSLKSLNLDARQITDTGLAALTSLTGLT 375
GL +LK L++ I+ + A+ L T
Sbjct: 239 CGLENLKVLSIRGNNISYDMVQAIHELGKFT 269
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 100/217 (46%), Gaps = 6/217 (2%)
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
++ L L + C+++ D + ++LT L +E + S+S + L LN+
Sbjct: 1 MSQLTELSLECNQLGDESAHKISQFKQLTSLGVENNEIGPTGAKSISTMKQLTSLNIKNN 60
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDE---CLVHLKGLTNLESLNLDSCGIGDEGLVN 295
+ +G S + L L++ N I DE + LK LTNL N+ I G++
Sbjct: 61 SVGVEGAHSISNMTRLTHLDISLNNIGDEGAKIICQLKQLTNL---NISYNQITSNGMIP 117
Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355
+ L L + ++G+ G+ ++SGL+ L +++ + + ++ L++L L
Sbjct: 118 FKEMKQLIILNVGSNRIGNEGIENISGLSQLTELDIGGCDFGNEGAKSISQLTNLTCLYC 177
Query: 356 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
+ I + G +++ L +T L+L + GA ++
Sbjct: 178 CSNNIREEGAKSISQLEKVTCLNLCVNYLHADGAKHI 214
Score = 39.3 bits (90), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 84/179 (46%), Gaps = 3/179 (1%)
Query: 52 IASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSL 111
I Q L ++++S + +T +G+I K+ L L+ +I + G+E++ GLS LT L
Sbjct: 93 IICQLKQLTNLNISYNQITSNGMIPFKEMKQLIILNVG-SNRIGNEGIENISGLSQLTEL 151
Query: 112 SFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDS 171
+ +G K+ + L NL L G ++ L K+ LN+ N +
Sbjct: 152 DIGGCD-FGNEGAKSISQLTNLTCLYCCSNNIREEGAKSISQLEKVTCLNL-CVNYLHAD 209
Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
K +S + L L + +++ D G L GL+ L +L++ G ++ + ++ LG
Sbjct: 210 GAKHISQMKQLTHLYMDSNEIGDDGAEDLCGLENLKVLSIRGNNISYDMVQAIHELGKF 268
>gi|290985429|ref|XP_002675428.1| predicted protein [Naegleria gruberi]
gi|284089024|gb|EFC42684.1| predicted protein [Naegleria gruberi]
Length = 451
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 76/279 (27%), Positives = 143/279 (51%), Gaps = 6/279 (2%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L+S+++ G + D G ++ + L SLD ++ Q+ G + +R + LTSL+
Sbjct: 177 SEMKQLISLNI-GKNEIDEGAKYISEMKQLASLDISYT-QVDVEGAKCIREMRQLTSLNI 234
Query: 114 RRNNAITAQGMKAFAGLINLVKLDL-ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 172
N I +G+K + + L L++ E I G + + + +L SLNI N I D
Sbjct: 235 C-GNRIGIEGVKLISEMRQLTSLNIGESDIGIEGTKL-ISEMKQLTSLNIS-NNLIGDEG 291
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
K +S + L SL I +++ + G ++ +++L LN+ + + +S + L
Sbjct: 292 AKLISEMKQLISLNIRANRIVNQGAKFISEMRQLRSLNISNNRIGIEGVKLISEMKQLIS 351
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
LN+ ++S++G + S++ L +LN+ NEI DE + + L+SL++ IG EG
Sbjct: 352 LNIRSNRISNEGTKLISEMRQLTLLNISNNEIGDEETKLISEMKQLKSLDISYNQIGIEG 411
Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 331
++ + L L ++D ++G G + +S + L SI L
Sbjct: 412 AKLISEMKQLTSLNIADNRIGGEGAKLISEMKQLTSITL 450
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 95/387 (24%), Positives = 175/387 (45%), Gaps = 17/387 (4%)
Query: 6 ISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPG--VNDKWMDVI---------AS 54
IS+Q FN + LT + F +Q Q+ VN + D + S
Sbjct: 70 ISKQFFNVIKERSKLTIQFKKKFTKKRVQLFLKSQFMNCIVNVTYSDWLLDSFEEAKFIS 129
Query: 55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
+ L S+ +SG+ + D + + L SLD + + I D G ++L + L SL+
Sbjct: 130 KMKQLTSLSISGNGIGDEEAKLISEMKQLTSLDISANL-IGDEGAKYLSEMKQLISLNIG 188
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC-NCITDSDM 173
+N +G K + + L LD+ G ++ + +L SLNI C N I +
Sbjct: 189 KNE--IDEGAKYISEMKQLASLDISYTQVDVEGAKCIREMRQLTSLNI--CGNRIGIEGV 244
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
K +S + L SL I S + G + +++LT LN+ + +S + L L
Sbjct: 245 KLISEMRQLTSLNIGESDIGIEGTKLISEMKQLTSLNISNNLIGDEGAKLISEMKQLISL 304
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
N+ ++ + G + S++ L+ LN+ N I E + + + L SLN+ S I +EG
Sbjct: 305 NIRANRIVNQGAKFISEMRQLRSLNISNNRIGIEGVKLISEMKQLISLNIRSNRISNEGT 364
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
++ + L L +S+ ++G + +S + L+S+++S+ I + ++ + L SL
Sbjct: 365 KLISEMRQLTLLNISNNEIGDEETKLISEMKQLKSLDISYNQIGIEGAKLISEMKQLTSL 424
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLF 380
N+ +I G ++ + LT + L
Sbjct: 425 NIADNRIGGEGAKLISEMKQLTSITLI 451
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 96/194 (49%), Gaps = 1/194 (0%)
Query: 199 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 258
++ +++LT L++ G + +S + L L+++ + D+G + S++ L LN
Sbjct: 127 FISKMKQLTSLSISGNGIGDEEAKLISEMKQLTSLDISANLIGDEGAKYLSEMKQLISLN 186
Query: 259 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 318
+G NEI DE ++ + L SL++ + EG + + L L + ++G G++
Sbjct: 187 IGKNEI-DEGAKYISEMKQLASLDISYTQVDVEGAKCIREMRQLTSLNICGNRIGIEGVK 245
Query: 319 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 378
+S + L S+N+ + I + ++ + L SLN+ I D G ++ + L L+
Sbjct: 246 LISEMRQLTSLNIGESDIGIEGTKLISEMKQLTSLNISNNLIGDEGAKLISEMKQLISLN 305
Query: 379 LFGARITDSGAAYL 392
+ RI + GA ++
Sbjct: 306 IRANRIVNQGAKFI 319
>gi|320165720|gb|EFW42619.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 664
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 91/298 (30%), Positives = 127/298 (42%), Gaps = 10/298 (3%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL--ERCTRIHGGLVN 150
QI+ GL+ L L + NN I + AF+GL LV+L L + T I
Sbjct: 166 QITTVPSSAFTGLTAL-QLLYLYNNQIATVAIDAFSGLTALVQLYLYNNQITSISANA-- 222
Query: 151 LKGLMKLESL--NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTL 208
GL KL +L N W + I S +GLT L L + +++T + GL L
Sbjct: 223 FSGLSKLNTLQLNNNWLSAIPSSAF---TGLTALTQLLLYNNQITTVPSSAFTGLTALQF 279
Query: 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 268
L L + +++ S L +L L L+ Q++ FS + L L+L N ++
Sbjct: 280 LYLYNNQIATVAINAFSGLTALVQLRLDTNQITTVPANAFSGLSKLNTLHLYNNWLSAIP 339
Query: 269 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 328
GLT L L LD+ I +GL L L L + Q+ + SGLT L
Sbjct: 340 SSAFTGLTALTQLRLDTNQITTVPANAFSGLTALIYLYLYNNQITTVPANAFSGLTALVQ 399
Query: 329 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
+ L I+ L GLS+L L L QIT + LT LT L LF IT
Sbjct: 400 LYLYNNQITTIPSSALTGLSALTQLYLYNNQITSVPANGFSGLTALTDLRLFNNTITS 457
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 106/381 (27%), Positives = 155/381 (40%), Gaps = 38/381 (9%)
Query: 15 VYSRCLTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSG 73
+Y+ +T +S AF + L L L N+ W+ I S +G
Sbjct: 210 LYNNQITSISANAFSGLSKLNTLQL------NNNWLSAIPSSA-------FTGLTALTQL 256
Query: 74 LIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINL 133
L++ + + S F GL L+ L + NN I + AF+GL L
Sbjct: 257 LLYNNQITTVPSSAFT--------GLTALQFL-------YLYNNQIATVAINAFSGLTAL 301
Query: 134 V--KLDLERCTRIHGGLVNLKGLMKLESLNI--KWCNCITDSDMKPLSGLTNLKSLQISC 189
V +LD + T + GL KL +L++ W + I S +GLT L L++
Sbjct: 302 VQLRLDTNQITTVPANA--FSGLSKLNTLHLYNNWLSAIPSSAF---TGLTALTQLRLDT 356
Query: 190 SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 249
+++T GL L L L +T ++ S L +L L L Q++ +
Sbjct: 357 NQITTVPANAFSGLTALIYLYLYNNQITTVPANAFSGLTALVQLYLYNNQITTIPSSALT 416
Query: 250 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 309
+ +L L L N+IT GLT L L L + I TGL L L+LS
Sbjct: 417 GLSALTQLYLYNNQITSVPANGFSGLTALTDLRLFNNTITSILANAFTGLTKLTYLDLSL 476
Query: 310 TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 369
Q+ S SGLT L + L +S GL++L L L QIT A T
Sbjct: 477 NQLTSIPAGAFSGLTALTQLLLYNNWLSAVPSSAFTGLTALLYLYLYNNQITTVAANAFT 536
Query: 370 SLTGLTHLDLFGARITDSGAA 390
LT L L L+G +IT A+
Sbjct: 537 GLTALVQLQLYGNQITTISAS 557
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 87/301 (28%), Positives = 125/301 (41%), Gaps = 33/301 (10%)
Query: 117 NAITAQGMKAFAGLINLVKLDL--ERCTRIHGGLVNLKGLMKLESLNI--KWCNCITDSD 172
N IT AF+GL L LDL + T + GL KL +L + W + I S
Sbjct: 93 NPITNIASSAFSGLSVLNTLDLTNNQITTVPANA--FSGLSKLNTLYLYNNWLSAIPSSA 150
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
+GLT L L + +++T + GL L LL L + +D+ S L +L
Sbjct: 151 F---TGLTALTQLLLHNNQITTVPSSAFTGLTALQLLYLYNNQIATVAIDAFSGLTALVQ 207
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
L L Q++ FS + L L L N ++ GLT L L L + I
Sbjct: 208 LYLYNNQITSISANAFSGLSKLNTLQLNNNWLSAIPSSAFTGLTALTQLLLYNNQITTVP 267
Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL-----------SFTGISDGSL 341
TGL L+ L L + Q+ + + SGLT L + L +F+G+S +
Sbjct: 268 SSAFTGLTALQFLYLYNNQIATVAINAFSGLTALVQLRLDTNQITTVPANAFSGLSKLNT 327
Query: 342 RKL-------------AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 388
L GL++L L LD QIT A + LT L +L L+ +IT
Sbjct: 328 LHLYNNWLSAIPSSAFTGLTALTQLRLDTNQITTVPANAFSGLTALIYLYLYNNQITTVP 387
Query: 389 A 389
A
Sbjct: 388 A 388
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 99/334 (29%), Positives = 139/334 (41%), Gaps = 34/334 (10%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
S + S L + L+ LD N QI+ GL+ L L + NN IT A
Sbjct: 336 SAIPSSAFTGLTALTQLR-LDTN---QITTVPANAFSGLTALIYL-YLYNNQITTVPANA 390
Query: 127 FAGLINLVKLDL--ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
F+GL LV+L L + T I L GL L L + + N IT SGLT L
Sbjct: 391 FSGLTALVQLYLYNNQITTIPSSA--LTGLSALTQLYL-YNNQITSVPANGFSGLTALTD 447
Query: 185 LQISCSKVTDSGIAYLKGLQKLTLLNL---EGCPVTAACLDSLSALGSLFYLN------- 234
L++ + +T GL KLT L+L + + A L+AL L N
Sbjct: 448 LRLFNNTITSILANAFTGLTKLTYLDLSLNQLTSIPAGAFSGLTALTQLLLYNNWLSAVP 507
Query: 235 --------------LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 280
L Q++ F+ + +L L L N+IT G+++L
Sbjct: 508 SSAFTGLTALLYLYLYNNQITTVAANAFTGLTALVQLQLYGNQITTISASAFAGMSSLVQ 567
Query: 281 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 340
L L S I + TGL +L LELS+ Q+ S SGLT + ++L +S
Sbjct: 568 LYLYSNRITAIFVNAFTGLTHLSLLELSNNQITSLPANAFSGLTAMTQLSLYNNSLSAVP 627
Query: 341 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 374
GL++L++L L QIT A T LT L
Sbjct: 628 SSAFTGLTALQALLLYNNQITSVAANAFTGLTAL 661
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 109/376 (28%), Positives = 159/376 (42%), Gaps = 34/376 (9%)
Query: 14 LVYSRCLTEVSLEAFRD-CALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDS 72
L+Y+ +T V AF ALQ L L N++ V + S L +
Sbjct: 257 LLYNNQITTVPSSAFTGLTALQFLYL-----YNNQIATVAINAFSGL------------T 299
Query: 73 GLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLIN 132
L+ L+ LD N QI+ GLS L +L NN ++A AF GL
Sbjct: 300 ALVQLR-------LDTN---QITTVPANAFSGLSKLNTLHLY-NNWLSAIPSSAFTGLTA 348
Query: 133 L--VKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS 190
L ++LD + T + GL L L + + N IT SGLT L L + +
Sbjct: 349 LTQLRLDTNQITTVPANA--FSGLTALIYLYL-YNNQITTVPANAFSGLTALVQLYLYNN 405
Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 250
++T + L GL LT L L +T+ + S L +L L L ++ F+
Sbjct: 406 QITTIPSSALTGLSALTQLYLYNNQITSVPANGFSGLTALTDLRLFNNTITSILANAFTG 465
Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 310
+ L L+L N++T GLT L L L + + TGL L L L +
Sbjct: 466 LTKLTYLDLSLNQLTSIPAGAFSGLTALTQLLLYNNWLSAVPSSAFTGLTALLYLYLYNN 525
Query: 311 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 370
Q+ + +GLT L + L I+ S AG+SSL L L + +IT + A T
Sbjct: 526 QITTVAANAFTGLTALVQLQLYGNQITTISASAFAGMSSLVQLYLYSNRITAIFVNAFTG 585
Query: 371 LTGLTHLDLFGARITD 386
LT L+ L+L +IT
Sbjct: 586 LTHLSLLELSNNQITS 601
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 86/314 (27%), Positives = 128/314 (40%), Gaps = 33/314 (10%)
Query: 104 GLSNLTSLSFRRNNAITAQGMK------------------------AFAGLINLVKLDL- 138
G+ T++ + +NN IT+ AF+GL L LDL
Sbjct: 56 GIPVTTTILYLQNNQITSISANAFSSLTLLTYLSLSSNPITNIASSAFSGLSVLNTLDLT 115
Query: 139 -ERCTRIHGGLVNLKGLMKLESLNI--KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS 195
+ T + GL KL +L + W + I S +GLT L L + +++T
Sbjct: 116 NNQITTVPANA--FSGLSKLNTLYLYNNWLSAIPSSAF---TGLTALTQLLLHNNQITTV 170
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
+ GL L LL L + +D+ S L +L L L Q++ FS + L
Sbjct: 171 PSSAFTGLTALQLLYLYNNQIATVAIDAFSGLTALVQLYLYNNQITSISANAFSGLSKLN 230
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 315
L L N ++ GLT L L L + I TGL L+ L L + Q+ +
Sbjct: 231 TLQLNNNWLSAIPSSAFTGLTALTQLLLYNNQITTVPSSAFTGLTALQFLYLYNNQIATV 290
Query: 316 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 375
+ SGLT L + L I+ +GLS L +L+L ++ +A T LT LT
Sbjct: 291 AINAFSGLTALVQLRLDTNQITTVPANAFSGLSKLNTLHLYNNWLSAIPSSAFTGLTALT 350
Query: 376 HLDLFGARITDSGA 389
L L +IT A
Sbjct: 351 QLRLDTNQITTVPA 364
>gi|124004058|ref|ZP_01688905.1| Rab family protein [Microscilla marina ATCC 23134]
gi|123990637|gb|EAY30117.1| Rab family protein [Microscilla marina ATCC 23134]
Length = 1165
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 115/351 (32%), Positives = 169/351 (48%), Gaps = 55/351 (15%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
LL +DLS + + D L LK ++LQSL QISD L L+ L +L L R+N
Sbjct: 226 LLKLDLSNNQLDD--LHPLKSLNSLQSLVLRNN-QISD--LTPLQALHSL-QLIVLRDNP 279
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD-------- 170
+T + L NL LDL R +I L L+ L L+S++++ N I D
Sbjct: 280 VT--DLTPLQSLRNLQSLDL-RNNQI-SDLTPLQNLSSLQSIDLR-HNPINDLLPLQNLP 334
Query: 171 ------------SDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVT 217
+D+ PL L NL+S+ +S ++++D + + L LQ + L N
Sbjct: 335 NLQSIDLKYNHINDLAPLQNLPNLESIDLSDNQISDLTPLQNLSNLQSIDLSN------- 387
Query: 218 AACLDSLSALGSLFYL-NLNRCQLSDDGCEKFSK---IGSLKVLNLGFNEITDECLVHLK 273
+ ++ L SL YL NL LSD+ + +G L+ ++L N+I D L L+
Sbjct: 388 ----NQVNHLASLQYLPNLESIDLSDNQINDLAPLQNLGDLQSIDLSNNQIHD--LTPLQ 441
Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333
L NLES++L I D L L L +L+ + L + QV S L L L +L++INLS
Sbjct: 442 NLPNLESIDLSDNQISD--LTPLQNLGSLQSINLRNNQV--SDLSPLQALHDLQAINLSD 497
Query: 334 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 384
ISD L L L LKS++L QI +T+ LT L L+ I
Sbjct: 498 NQISD--LAPLQKLPHLKSIDLRDNQIEVFPEHLITNCPQLTSLHLYHNPI 546
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 78/254 (30%), Positives = 113/254 (44%), Gaps = 48/254 (18%)
Query: 171 SDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTA----------- 218
SD+KPL L NL+ L +S ++V D + + L GLQ + L + +T
Sbjct: 127 SDLKPLQNLANLQMLDMSDNRVADLTPLQNLPGLQSIVLSKNKVRDLTPLQHLTGLHTLL 186
Query: 219 ------ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
L L L L L+L+ ++SD K+ L L+L N++ D L L
Sbjct: 187 LHYNKIGDLAPLQHLTCLTMLSLHHNKISD--LAPLQKLRGLLKLDLSNNQLDD--LHPL 242
Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 332
K L +L+SL L + I D L L L +L+ + L D V + L L L NL+S++L
Sbjct: 243 KSLNSLQSLVLRNNQISD--LTPLQALHSLQLIVLRDNPV--TDLTPLQSLRNLQSLDLR 298
Query: 333 FTGISDGSLRKLAGLSSLKSLNLDARQITD--------------------TGLAALTSLT 372
ISD L L LSSL+S++L I D LA L +L
Sbjct: 299 NNQISD--LTPLQNLSSLQSIDLRHNPINDLLPLQNLPNLQSIDLKYNHINDLAPLQNLP 356
Query: 373 GLTHLDLFGARITD 386
L +DL +I+D
Sbjct: 357 NLESIDLSDNQISD 370
>gi|290980799|ref|XP_002673119.1| predicted protein [Naegleria gruberi]
gi|284086700|gb|EFC40375.1| predicted protein [Naegleria gruberi]
Length = 426
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 72/301 (23%), Positives = 140/301 (46%), Gaps = 3/301 (0%)
Query: 94 ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
I G +++ GL LT L+ R N IT G K + + L L + G + G
Sbjct: 117 IGPEGAKYISGLEQLTFLNIRAN-EITMDGAKFISEMKQLTGLKIVGNNICDEGAKFISG 175
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
+ +L +L+I N I ++ K +S + N++ L I + + D G+ +++LT LN+
Sbjct: 176 MKQLTNLDI-ASNNIGENGAKYVSEMMNIRKLDIGFNSIND-GVKCFGEMKQLTDLNVNS 233
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
C + +S+ L +L++ ++ G S++ +L L++ N I D + +
Sbjct: 234 CCIGLDGTKYISSFNQLTHLSIAENLITPYGAIHISQMKNLIKLDISDNRIRDNGVQSIS 293
Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333
+ L LN+ S I G+ + + NL L ++ +G +S + +L +++
Sbjct: 294 EMNQLTELNVSSIDITPIGIQYICKMDNLTYLIIAHNNIGEKSANQISEMKHLAQLSIYH 353
Query: 334 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
+ D + ++ + L L++ +I D G+ AL+ + LT L+ I+D G Y+R
Sbjct: 354 NAVGDEGAKFISEMEQLTFLDIGYNEIGDEGVKALSGMKQLTRLNAVDNNISDEGEKYIR 413
Query: 394 S 394
Sbjct: 414 E 414
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 109/242 (45%), Gaps = 26/242 (10%)
Query: 176 LSGLTNLKSLQISC-SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
L + LK L I SK+ SG Y+ L++LT L + C L +L SL YL
Sbjct: 28 LDSMKELKKLNIEFNSKIDPSGFKYICSLEQLTDLYMTFCYFGFDIAKHLPSLKSLTYLL 87
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG----- 289
+ + +G + ++ LK L++ N I E ++ GL L LN+ + I
Sbjct: 88 ITGNYIGVEGAKYIGEMKQLKQLHIANNNIGPEGAKYISGLEQLTFLNIRANEITMDGAK 147
Query: 290 -------------------DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 330
DEG ++G+ L L+++ +G +G +++S + N+ ++
Sbjct: 148 FISEMKQLTGLKIVGNNICDEGAKFISGMKQLTNLDIASNNIGENGAKYVSEMMNIRKLD 207
Query: 331 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 390
+ F I+DG ++ + L LN+++ I G ++S LTHL + IT GA
Sbjct: 208 IGFNSINDG-VKCFGEMKQLTDLNVNSCCIGLDGTKYISSFNQLTHLSIAENLITPYGAI 266
Query: 391 YL 392
++
Sbjct: 267 HI 268
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 64/284 (22%), Positives = 129/284 (45%), Gaps = 25/284 (8%)
Query: 133 LVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 191
L KL++E ++I G + L +L L + +C D K L L +L L I+ +
Sbjct: 34 LKKLNIEFNSKIDPSGFKYICSLEQLTDLYMTFCYFGFDI-AKHLPSLKSLTYLLITGNY 92
Query: 192 VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI 251
+ G Y+ +++L L++ + +S L L +LN+ +++ DG + S++
Sbjct: 93 IGVEGAKYIGEMKQLKQLHIANNNIGPEGAKYISGLEQLTFLNIRANEITMDGAKFISEM 152
Query: 252 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL------ 305
L L + N I DE + G+ L +L++ S IG+ G ++ + N++ L
Sbjct: 153 KQLTGLKIVGNNICDEGAKFISGMKQLTNLDIASNNIGENGAKYVSEMMNIRKLDIGFNS 212
Query: 306 ------------ELSDTQVGS-----SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 348
+L+D V S G +++S L ++++ I+ ++ +
Sbjct: 213 INDGVKCFGEMKQLTDLNVNSCCIGLDGTKYISSFNQLTHLSIAENLITPYGAIHISQMK 272
Query: 349 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
+L L++ +I D G+ +++ + LT L++ IT G Y+
Sbjct: 273 NLIKLDISDNRIRDNGVQSISEMNQLTELNVSSIDITPIGIQYI 316
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 70/149 (46%), Gaps = 1/149 (0%)
Query: 245 CEKFSKIGSLKVLNLGFNEITDEC-LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 303
CE + LK LN+ FN D ++ L L L + C G + +L L +L
Sbjct: 25 CEILDSMKELKKLNIEFNSKIDPSGFKYICSLEQLTDLYMTFCYFGFDIAKHLPSLKSLT 84
Query: 304 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 363
L ++ +G G +++ + L+ ++++ I + ++GL L LN+ A +IT
Sbjct: 85 YLLITGNYIGVEGAKYIGEMKQLKQLHIANNNIGPEGAKYISGLEQLTFLNIRANEITMD 144
Query: 364 GLAALTSLTGLTHLDLFGARITDSGAAYL 392
G ++ + LT L + G I D GA ++
Sbjct: 145 GAKFISEMKQLTGLKIVGNNICDEGAKFI 173
>gi|195121256|ref|XP_002005136.1| GI19235 [Drosophila mojavensis]
gi|193910204|gb|EDW09071.1| GI19235 [Drosophila mojavensis]
Length = 545
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 117/371 (31%), Positives = 188/371 (50%), Gaps = 62/371 (16%)
Query: 7 SQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG 66
S +FN LV R + +V + + R +L+DL +G +L S++LSG
Sbjct: 209 SPSLFNCLV-RRGIKKVQILSLRR-SLKDLVVGV----------------PALTSLNLSG 250
Query: 67 S-DVTDSGLIHL--KDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQ 122
+V D L H D NL++LD + C QI+D L + + L NL +L IT
Sbjct: 251 CFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLKNLETLELGGCCNITNT 310
Query: 123 GMKAFA-GLINLVKLDLERCTRIH-GGLVNLKGL--------MKLESLNIKWCNCITDSD 172
G+ A GL L L+L C I G+ +L G ++LE L ++ C ++D
Sbjct: 311 GLLLIAWGLKKLRHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEYLGLQDCQRLSDEA 370
Query: 173 MKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
+ ++ GLT+LKS+ +S C VTDSG+ +L + KL LNL C D++S +G
Sbjct: 371 LGHIAQGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSC-------DNISDIGMA 423
Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHL-KGLTNLESLNLDSCGI 288
+ L++ G S I SL V F ++I+D+ L H+ +GL L SL+L+ C I
Sbjct: 424 Y--------LTEGG----SGINSLDV---SFCDKISDQALTHIAQGLYRLRSLSLNQCQI 468
Query: 289 GDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLS-GLTNLESINL-SFTGISDGSLRKL 344
D+G++ + L L+ L + +++ GL+ L+ L+NL++I+L T +S + +
Sbjct: 469 TDQGMLKIAKSLHELENLNIGQCSRITDKGLQTLAEDLSNLKTIDLYGCTQLSSKGIDII 528
Query: 345 AGLSSLKSLNL 355
L L+ LNL
Sbjct: 529 MKLPKLQKLNL 539
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 99/306 (32%), Positives = 157/306 (51%), Gaps = 35/306 (11%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAF-----AGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
RG+ + LS RR+ G+ A +G N+ ++L H V+L L
Sbjct: 219 RGIKKVQILSLRRSLKDLVVGVPALTSLNLSGCFNVADMNLG-----HAFSVDLPNL--- 270
Query: 158 ESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLK-GLQKLTLLNLEGC 214
++L++ C ITD+ + ++ L NL++L++ C +T++G+ + GL+KL LNL C
Sbjct: 271 KTLDLSLCKQITDTSLGRIAQHLKNLETLELGGCCNITNTGLLLIAWGLKKLRHLNLRSC 330
Query: 215 PVTA-------ACLDSLSALGSL--FYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-N 262
+ A +A G+L YL L CQ LSD+ ++ + SLK +NL F
Sbjct: 331 WHISDQGIGHLAGFSRETAEGNLQLEYLGLQDCQRLSDEALGHIAQGLTSLKSINLSFCV 390
Query: 263 EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRH 319
+TD L HL + LE LNL SC I D G+ LT G + L++S ++ L H
Sbjct: 391 SVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGSGINSLDVSFCDKISDQALTH 450
Query: 320 LS-GLTNLESINLSFTGISDGSLRKLA-GLSSLKSLNL-DARQITDTGLAALTS-LTGLT 375
++ GL L S++L+ I+D + K+A L L++LN+ +ITD GL L L+ L
Sbjct: 451 IAQGLYRLRSLSLNQCQITDQGMLKIAKSLHELENLNIGQCSRITDKGLQTLAEDLSNLK 510
Query: 376 HLDLFG 381
+DL+G
Sbjct: 511 TIDLYG 516
>gi|195029827|ref|XP_001987773.1| GH22100 [Drosophila grimshawi]
gi|193903773|gb|EDW02640.1| GH22100 [Drosophila grimshawi]
Length = 550
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 114/371 (30%), Positives = 187/371 (50%), Gaps = 62/371 (16%)
Query: 7 SQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG 66
S +FN LV R + +V + + R +L+DL LG +L S++LSG
Sbjct: 214 SPSLFNCLV-RRGIKKVQILSLRR-SLKDLVLGV----------------PALTSLNLSG 255
Query: 67 S-DVTDSGLIHL--KDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQ 122
+V D L H D NL++LD + C QI+D L + + L NL +L IT
Sbjct: 256 CFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLKNLETLELGGCCNITNT 315
Query: 123 GMKAFA-GLINLVKLDLERCTRIH-GGLVNLKGL--------MKLESLNIKWCNCITDSD 172
G+ A GL L L+L C I G+ +L G ++LE L ++ C ++D
Sbjct: 316 GLLLIAWGLKKLRHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEFLGLQDCQRLSDEA 375
Query: 173 MKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
+ ++ GLT+LKS+ +S C VTDSG+ +L + KL LNL C D++S +G
Sbjct: 376 LGHIAQGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSC-------DNISDIGMA 428
Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHL-KGLTNLESLNLDSCGI 288
+ L++ G + L++ F ++I+D+ L H+ +GL L SL+L+ C I
Sbjct: 429 Y--------LTEGG-------SGINCLDVSFCDKISDQALTHIAQGLFRLRSLSLNQCHI 473
Query: 289 GDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLS-GLTNLESINL-SFTGISDGSLRKL 344
D+G++ + L L+ L + +++ GL+ L+ L+NL++I+L T +S + +
Sbjct: 474 TDQGMLKIAKSLHELENLNIGQCSRITDKGLQTLAEDLSNLKTIDLYGCTQLSSKGIDII 533
Query: 345 AGLSSLKSLNL 355
L L+ LNL
Sbjct: 534 MKLPKLQKLNL 544
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 99/306 (32%), Positives = 158/306 (51%), Gaps = 35/306 (11%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAF-----AGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
RG+ + LS RR+ G+ A +G N+ ++L H V+L L
Sbjct: 224 RGIKKVQILSLRRSLKDLVLGVPALTSLNLSGCFNVADMNLG-----HAFSVDLPNL--- 275
Query: 158 ESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLK-GLQKLTLLNLEGC 214
++L++ C ITD+ + ++ L NL++L++ C +T++G+ + GL+KL LNL C
Sbjct: 276 KTLDLSLCKQITDTSLGRIAQHLKNLETLELGGCCNITNTGLLLIAWGLKKLRHLNLRSC 335
Query: 215 PVTA-------ACLDSLSALGSL--FYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-N 262
+ A +A G+L +L L CQ LSD+ ++ + SLK +NL F
Sbjct: 336 WHISDQGIGHLAGFSRETAEGNLQLEFLGLQDCQRLSDEALGHIAQGLTSLKSINLSFCV 395
Query: 263 EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRH 319
+TD L HL + LE LNL SC I D G+ LT G + CL++S ++ L H
Sbjct: 396 SVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGSGINCLDVSFCDKISDQALTH 455
Query: 320 LS-GLTNLESINLSFTGISDGSLRKLA-GLSSLKSLNL-DARQITDTGLAALTS-LTGLT 375
++ GL L S++L+ I+D + K+A L L++LN+ +ITD GL L L+ L
Sbjct: 456 IAQGLFRLRSLSLNQCHITDQGMLKIAKSLHELENLNIGQCSRITDKGLQTLAEDLSNLK 515
Query: 376 HLDLFG 381
+DL+G
Sbjct: 516 TIDLYG 521
>gi|320168558|gb|EFW45457.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 828
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 81/273 (29%), Positives = 127/273 (46%), Gaps = 7/273 (2%)
Query: 116 NNAITAQGMKAFAGLINLVKLDL--ERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSD 172
NN IT+ AF GL L +L L + + I +L L+ L + N IT +
Sbjct: 118 NNQITSISANAFVGLTALTQLLLYNNQISSIPASAWADLNTLINLS----LYQNRITSIN 173
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
L+ LT LK+L + +++T GL LT L ++ P+T+ + ++L +L
Sbjct: 174 DASLTSLTALKTLILDNNQITSVPANAFAGLTSLTYLTVQSNPITSISAGAFASLSALTC 233
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
L L+ QL + F+ + +L +LNL N++T GL L L L I
Sbjct: 234 LYLSSNQLVSIPADAFTDLTALTLLNLRDNQLTSISANAFTGLVALTQLQLPGNQITSIA 293
Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
TGL L L+L+ Q S L+GL L ++ L I+ AG+++L++
Sbjct: 294 ADAFTGLNALSFLDLTSNQFSSIPSSALTGLPALSTLILYTNSITSIPANAFAGMTALQA 353
Query: 353 LNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
+ L QIT +A T LT +T+L L G +T
Sbjct: 354 VVLSTNQITSIAASAFTGLTAVTYLVLDGNPVT 386
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 65/229 (28%), Positives = 100/229 (43%), Gaps = 1/229 (0%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
GL L +L++ + N +T + LT LK L++ +++T GL LT L
Sbjct: 81 FTGLTALTTLHL-YANQLTSIPAYNFTVLTALKDLRLDNNQITSISANAFVGLTALTQLL 139
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
L +++ + + L +L L+L + +++ + + +LK L L N+IT
Sbjct: 140 LYNNQISSIPASAWADLNTLINLSLYQNRITSINDASLTSLTALKTLILDNNQITSVPAN 199
Query: 271 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 330
GLT+L L + S I L L CL LS Q+ S + LT L +N
Sbjct: 200 AFAGLTSLTYLTVQSNPITSISAGAFASLSALTCLYLSSNQLVSIPADAFTDLTALTLLN 259
Query: 331 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
L ++ S GL +L L L QIT A T L L+ LDL
Sbjct: 260 LRDNQLTSISANAFTGLVALTQLQLPGNQITSIAADAFTGLNALSFLDL 308
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 72/261 (27%), Positives = 102/261 (39%), Gaps = 10/261 (3%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
S + S L NL SL N I+D L L L L NN IT+ A
Sbjct: 146 SSIPASAWADLNTLINL-SLYQNRITSINDASLTSLTALKTL----ILDNNQITSVPANA 200
Query: 127 FAGLINLVKLDLE--RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
FAGL +L L ++ T I G L L L + N + + LT L
Sbjct: 201 FAGLTSLTYLTVQSNPITSISAGA--FASLSALTCLYLS-SNQLVSIPADAFTDLTALTL 257
Query: 185 LQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 244
L + +++T GL LT L L G +T+ D+ + L +L +L+L Q S
Sbjct: 258 LNLRDNQLTSISANAFTGLVALTQLQLPGNQITSIAADAFTGLNALSFLDLTSNQFSSIP 317
Query: 245 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 304
+ + +L L L N IT G+T L+++ L + I TGL +
Sbjct: 318 SSALTGLPALSTLILYTNSITSIPANAFAGMTALQAVVLSTNQITSIAASAFTGLTAVTY 377
Query: 305 LELSDTQVGSSGLRHLSGLTN 325
L L V + GL N
Sbjct: 378 LVLDGNPVTTLPPGLFQGLPN 398
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 64/142 (45%), Gaps = 6/142 (4%)
Query: 247 KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS---CGIGDEGLVNLTGLCNLK 303
F+ + +L L+L N++T + LT L+ L LD+ I V LT L L
Sbjct: 80 AFTGLTALTTLHLYANQLTSIPAYNFTVLTALKDLRLDNNQITSISANAFVGLTALTQLL 139
Query: 304 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 363
+ + +S L+ L NL T I+D SL L ++LK+L LD QIT
Sbjct: 140 LYNNQISSIPASAWADLNTLINLSLYQNRITSINDASLTSL---TALKTLILDNNQITSV 196
Query: 364 GLAALTSLTGLTHLDLFGARIT 385
A LT LT+L + IT
Sbjct: 197 PANAFAGLTSLTYLTVQSNPIT 218
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 68/151 (45%), Gaps = 2/151 (1%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
Q++ GL LT L N IT+ AF GL L LDL L
Sbjct: 264 QLTSISANAFTGLVALTQLQLPGNQ-ITSIAADAFTGLNALSFLDLTSNQFSSIPSSALT 322
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
GL L +L I + N IT +G+T L+++ +S +++T + GL +T L L+
Sbjct: 323 GLPALSTL-ILYTNSITSIPANAFAGMTALQAVVLSTNQITSIAASAFTGLTAVTYLVLD 381
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
G PVT L + YL++++ +S +
Sbjct: 382 GNPVTTLPPGLFQGLPNGLYLSVSQQYMSPN 412
Score = 45.8 bits (107), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 84/197 (42%), Gaps = 24/197 (12%)
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 266
T L+L+G + + + + L +L L+L QL+ F+ + +LK L L N+IT
Sbjct: 64 TRLSLQGNLIPSIAAGAFTGLTALTTLHLYANQLTSIPAYNFTVLTALKDLRLDNNQITS 123
Query: 267 ECLVHLKGLTNLESL--------NLDSCGIGD-EGLVN---------------LTGLCNL 302
GLT L L ++ + D L+N LT L L
Sbjct: 124 ISANAFVGLTALTQLLLYNNQISSIPASAWADLNTLINLSLYQNRITSINDASLTSLTAL 183
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
K L L + Q+ S +GLT+L + + I+ S A LS+L L L + Q+
Sbjct: 184 KTLILDNNQITSVPANAFAGLTSLTYLTVQSNPITSISAGAFASLSALTCLYLSSNQLVS 243
Query: 363 TGLAALTSLTGLTHLDL 379
A T LT LT L+L
Sbjct: 244 IPADAFTDLTALTLLNL 260
>gi|417399805|gb|JAA46888.1| Putative f-box/lrr-repeat protein 14 [Desmodus rotundus]
Length = 368
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 100/315 (31%), Positives = 170/315 (53%), Gaps = 32/315 (10%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
++ +N++SL+ + C ++D GL H ++ +S+L +L+ IT + A + L
Sbjct: 54 IQGMANIESLNLSGCYNLTDNGLGHAFVQEISSLRALNLSLCKQITDSSLGRIAQYLKGL 113
Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LK 183
L+L C+ I G L+ GL +L+SLN++ C ++D + L+G+T L+
Sbjct: 114 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLE 173
Query: 184 SLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-Q 239
L + C K+TD + ++ +GL L LLNL C ++ A L LS +GSL LNL C
Sbjct: 174 QLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDN 233
Query: 240 LSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGLVN 295
+SD G + +GSL++ L++ F +++ D+ L ++ +GL L+SL+L SC I D+G+
Sbjct: 234 ISDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINR 292
Query: 296 LT----GLCNL---KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 348
+ GL L +C+ ++D + HLS LT ++ T I+ L ++ L
Sbjct: 293 MVRQMHGLRTLNIGQCVRITDKGLELIA-EHLSQLTGIDLYG--CTRITKRGLERITQLP 349
Query: 349 SLKSLNLDARQITDT 363
LK LNL Q+TD+
Sbjct: 350 CLKVLNLGLWQMTDS 364
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 95/302 (31%), Positives = 152/302 (50%), Gaps = 38/302 (12%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + G ++ + L +
Sbjct: 36 RGIRRVQILSLRRSLSYVIQGMA------NIESLNLSGCYNLTDNGLGHAFVQEISSLRA 89
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LN+ C ITDS + ++ LK L++ CS +T++G+ + GLQ+L LNL C
Sbjct: 90 LNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSC 147
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL-K 273
LS +G + R + +GC +G ++ ++TD L H+ +
Sbjct: 148 R-------HLSDVGIGHLAGMTRS--AAEGC-----LGLEQLTLQDCQKLTDLSLKHISR 193
Query: 274 GLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLEL-SDTQVGSSGLRHLS-GLTNLESIN 330
GLT L LNL CG I D GL++L+ + +L+ L L S + +G+ HL+ G L ++
Sbjct: 194 GLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLD 253
Query: 331 LSFT-GISDGSLRKLA-GLSSLKSLNLDARQITDTGLAALT-SLTGLTHLDLFG-ARITD 386
+SF + D SL +A GL LKSL+L + I+D G+ + + GL L++ RITD
Sbjct: 254 VSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITD 313
Query: 387 SG 388
G
Sbjct: 314 KG 315
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 103/204 (50%), Gaps = 29/204 (14%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ + + L+ L+ +FC ISD GL HL + +L SL+ R + I+ G+
Sbjct: 183 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 242
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C ++ + +GL L+SL++ C+ D + + + L++
Sbjct: 243 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 302
Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
L I C ++TD G+ + + L +LT ++L GC +++
Sbjct: 303 LNIGQCVRITDKGLELIAEHLSQLTGIDLYGCT-----------------------RITK 339
Query: 243 DGCEKFSKIGSLKVLNLGFNEITD 266
G E+ +++ LKVLNLG ++TD
Sbjct: 340 RGLERITQLPCLKVLNLGLWQMTD 363
>gi|149175637|ref|ZP_01854257.1| putative serine/threonine-protein kinase [Planctomyces maris DSM
8797]
gi|148845622|gb|EDL59965.1| putative serine/threonine-protein kinase [Planctomyces maris DSM
8797]
Length = 718
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 94/174 (54%), Gaps = 10/174 (5%)
Query: 228 GSLFYLNLNRCQLSDDG-CEKFSKIGSLKVLNLGFNEI-------TDECLVHLKGLTNLE 279
+++ LN ++C++ DG E +++ L V++ EI T E + LKGL LE
Sbjct: 510 AAVWLLN-HQCEIIIDGRYEPVTQVQELPVVDFYIREIKFHPQTITREVMAPLKGLAKLE 568
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT-GISD 338
+L+L+ C + D+ L L G LK L+L +T + ++GL H+S L NL ++L I+D
Sbjct: 569 TLHLEDCHVMDDALAPLEGKLTLKTLDLHETGLTNAGLSHISSLLNLTHLSLQKNREITD 628
Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
L+ LA L L S+NLD ITD G+ + L L++ +I+D+ L
Sbjct: 629 EGLQALANLKKLSSINLDRLNITDEGITFIKHNPRLDWLNIKDTQISDTSIPLL 682
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 96/199 (48%), Gaps = 12/199 (6%)
Query: 165 CNCITDSDMKPLSGLTNL-------KSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
C I D +P++ + L + ++ +T +A LKGL KL L+LE C V
Sbjct: 519 CEIIIDGRYEPVTQVQELPVVDFYIREIKFHPQTITREVMAPLKGLAKLETLHLEDCHVM 578
Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN-EITDECLVHLKGLT 276
L L +L L+L+ L++ G S + +L L+L N EITDE L L L
Sbjct: 579 DDALAPLEGKLTLKTLDLHETGLTNAGLSHISSLLNLTHLSLQKNREITDEGLQALANLK 638
Query: 277 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 336
L S+NLD I DEG+ + L L + DTQ+ + + L L ++++ L + I
Sbjct: 639 KLSSINLDRLNITDEGITFIKHNPRLDWLNIKDTQISDTSIPLLIKLNRMKNLYLEGSKI 698
Query: 337 SDGSLRKL----AGLSSLK 351
+D ++K+ AG +K
Sbjct: 699 TDQGIQKIKNAYAGRDPIK 717
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 79/146 (54%), Gaps = 2/146 (1%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+ L ++ L V D L L+ L++LD + +++ GL H+ L NLT LS ++N
Sbjct: 565 AKLETLHLEDCHVMDDALAPLEGKLTLKTLDLHET-GLTNAGLSHISSLLNLTHLSLQKN 623
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
IT +G++A A L L ++L+R G+ +K +L+ LNIK I+D+ + L
Sbjct: 624 REITDEGLQALANLKKLSSINLDRLNITDEGITFIKHNPRLDWLNIK-DTQISDTSIPLL 682
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKG 202
L +K+L + SK+TD GI +K
Sbjct: 683 IKLNRMKNLYLEGSKITDQGIQKIKN 708
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 90/191 (47%), Gaps = 8/191 (4%)
Query: 91 CIQISDGGLEHLRGLSNLTSLSFR------RNNAITAQGMKAFAGLINLVKLDLERCTRI 144
C I DG E + + L + F IT + M GL L L LE C +
Sbjct: 519 CEIIIDGRYEPVTQVQELPVVDFYIREIKFHPQTITREVMAPLKGLAKLETLHLEDCHVM 578
Query: 145 HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK-VTDSGIAYLKGL 203
L L+G + L++L++ +T++ + +S L NL L + ++ +TD G+ L L
Sbjct: 579 DDALAPLEGKLTLKTLDLHETG-LTNAGLSHISSLLNLTHLSLQKNREITDEGLQALANL 637
Query: 204 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE 263
+KL+ +NL+ +T + + L +LN+ Q+SD K+ +K L L ++
Sbjct: 638 KKLSSINLDRLNITDEGITFIKHNPRLDWLNIKDTQISDTSIPLLIKLNRMKNLYLEGSK 697
Query: 264 ITDECLVHLKG 274
ITD+ + +K
Sbjct: 698 ITDQGIQKIKN 708
>gi|356513289|ref|XP_003525346.1| PREDICTED: uncharacterized protein LOC100814174 [Glycine max]
Length = 589
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 84/302 (27%), Positives = 140/302 (46%), Gaps = 28/302 (9%)
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIH-GGLVNLKGLMKLESLNIKWCNCITDSD 172
R +N++ A+ M +L L+L C R+ L + G+ L+ L++ C + D+
Sbjct: 71 RGDNSVDAEWMAYLGAYRHLRYLNLSDCHRVSTSALWPITGMSSLQELDLSRCFKVNDAG 130
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
+ + + NL+ L+IS + VT G+ L L+ L+LL+L G PV L SL L L Y
Sbjct: 131 INHILSIPNLERLRISETSVTAKGVKLLASLKNLSLLDLGGLPVDDVALTSLQVLKRLHY 190
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI---- 288
++L ++S+ G + L LNL + +T L L+ LE LN+ +C I
Sbjct: 191 IDLWGSKISNKGASVLNTFPKLTYLNLAWTSVTK-----LPKLSFLEYLNMSNCTIDSIL 245
Query: 289 -GDEGLVN---LTGLCNLKCLE---------LSDTQVGSSGLRH---LSGLTNLESINLS 332
D+ + L+G + E LS V +S LS + +E +NLS
Sbjct: 246 EDDKAPLAKLILSGAMFMNEAEALLYANTNFLSFLDVANSSFHRFFFLSKMKVIEHLNLS 305
Query: 333 FTGISDGSLRKLA-GLSSLKSLNLDARQITDTGLAALT-SLTGLTHLDLFGARITDSGAA 390
+ D S+ +A +LKSLNL +++ GL L + L L L + D+ +
Sbjct: 306 SCMMGDDSVEMVACAGGNLKSLNLSGTRVSSAGLGILAGHVPHLEILSLSQTPVDDTAIS 365
Query: 391 YL 392
++
Sbjct: 366 FI 367
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 76/137 (55%), Gaps = 2/137 (1%)
Query: 260 GFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSD-TQVGSSGL 317
G N + E + +L +L LNL C + L +TG+ +L+ L+LS +V +G+
Sbjct: 72 GDNSVDAEWMAYLGAYRHLRYLNLSDCHRVSTSALWPITGMSSLQELDLSRCFKVNDAGI 131
Query: 318 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 377
H+ + NLE + +S T ++ ++ LA L +L L+L + D L +L L L ++
Sbjct: 132 NHILSIPNLERLRISETSVTAKGVKLLASLKNLSLLDLGGLPVDDVALTSLQVLKRLHYI 191
Query: 378 DLFGARITDSGAAYLRS 394
DL+G++I++ GA+ L +
Sbjct: 192 DLWGSKISNKGASVLNT 208
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 93/209 (44%), Gaps = 20/209 (9%)
Query: 151 LKGLMKLESLNIKWCNCITDS-DMKPLSGLTNLKSLQISCSKVTDSGIAYLKG-LQKLTL 208
L + +E LN+ C DS +M +G NLKSL +S ++V+ +G+ L G + L +
Sbjct: 293 LSKMKVIEHLNLSSCMMGDDSVEMVACAG-GNLKSLNLSGTRVSSAGLGILAGHVPHLEI 351
Query: 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 268
L+L PV + +S + SL LS+ + F G V
Sbjct: 352 LSLSQTPVDDTAISFISMMPSL-----KDVDLSNTNIKGFLHQGRTDV----------NS 396
Query: 269 LVHLKGLTNL--ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 326
L+ L L NL E LNL+ + DE L L+ L+ L L + L +LS + L
Sbjct: 397 LLSLMALQNLKLERLNLEHTQVRDEALYPLSSFQELRYLSLKSASLADISLYYLSSIPKL 456
Query: 327 ESINLSFTGISDGSLRKLAGLSSLKSLNL 355
++++ +++ L +LK L+L
Sbjct: 457 TNLSICDAVLTNYGLDMFKAPETLKLLDL 485
Score = 41.6 bits (96), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 88/198 (44%), Gaps = 21/198 (10%)
Query: 46 DKWMDVIASQGSSLLSVDLSGSDVTDSGL-IHLKDCSNLQSLDFNFCIQISDGGLEHLRG 104
D ++++A G +L S++LSG+ V+ +GL I +L+ L + + D + +
Sbjct: 311 DDSVEMVACAGGNLKSLNLSGTRVSSAGLGILAGHVPHLEILSLS-QTPVDDTAISFISM 369
Query: 105 LSNLTSLSFRRNN--AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
+ +L + N QG L++L+ L NLK LE LN+
Sbjct: 370 MPSLKDVDLSNTNIKGFLHQGRTDVNSLLSLM------------ALQNLK----LERLNL 413
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
+ + D + PLS L+ L + + + D + YL + KLT L++ +T LD
Sbjct: 414 EHTQ-VRDEALYPLSSFQELRYLSLKSASLADISLYYLSSIPKLTNLSICDAVLTNYGLD 472
Query: 223 SLSALGSLFYLNLNRCQL 240
A +L L+L C L
Sbjct: 473 MFKAPETLKLLDLKGCWL 490
>gi|397781344|ref|YP_006545817.1| Internalin-A [Methanoculleus bourgensis MS2]
gi|396939846|emb|CCJ37101.1| Internalin-A [Methanoculleus bourgensis MS2]
Length = 2759
Score = 85.5 bits (210), Expect = 4e-14, Method: Composition-based stats.
Identities = 89/254 (35%), Positives = 134/254 (52%), Gaps = 21/254 (8%)
Query: 137 DLERCTRIHG---GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT 193
D+ TR+ G+ +L GL +L + + SD+ PL+GLTNL++L + ++V+
Sbjct: 1506 DMATLTRLSAAGRGIRDLSGLEYAVNLQTLYISNNQISDLSPLAGLTNLQTLWLQDNQVS 1565
Query: 194 D-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG 252
D S +A L LQ+L L + V+ L+ L +L L L Q+SD + +
Sbjct: 1566 DLSPLAGLTNLQRLWLNQNQIRDVS-----PLAGLTNLRELLLAVNQISD--LSPLAGLT 1618
Query: 253 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 312
+L + L N+I+D L L GLTNL + L I D L L GL NL L++S Q+
Sbjct: 1619 NLGYVQLYRNQISD--LSPLAGLTNLGYVQLYRNQISD--LSPLAGLTNLYFLDISYNQI 1674
Query: 313 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 372
S L L+ LTNL +++S+ ISD + LAGL+ L L+LD QI+D ++ L L
Sbjct: 1675 --SDLSPLASLTNLYFLDISYNQISD--ISPLAGLTRLSRLSLDNNQISD--ISPLAGLI 1728
Query: 373 GLTHLDLFGARITD 386
L L+L +I D
Sbjct: 1729 NLYVLNLNYNQIRD 1742
Score = 50.4 bits (119), Expect = 0.002, Method: Composition-based stats.
Identities = 49/150 (32%), Positives = 71/150 (47%), Gaps = 36/150 (24%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
QISD L L GL+NL + RN + AGL NL LD+
Sbjct: 1629 QISD--LSPLAGLTNLGYVQLYRNQI---SDLSPLAGLTNLYFLDISY------------ 1671
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
N I SD+ PL+ LTNL L IS ++++D I+ L GL +L+ L+L+
Sbjct: 1672 -------------NQI--SDLSPLASLTNLYFLDISYNQISD--ISPLAGLTRLSRLSLD 1714
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
++ + L+ L +L+ LNLN Q+ D
Sbjct: 1715 NNQISD--ISPLAGLINLYVLNLNYNQIRD 1742
Score = 48.1 bits (113), Expect = 0.007, Method: Composition-based stats.
Identities = 38/93 (40%), Positives = 52/93 (55%), Gaps = 6/93 (6%)
Query: 272 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 331
L GLT+L++L+L + I D L L GL NL L L Q+ G L+GLT+L+ ++L
Sbjct: 757 LAGLTDLQTLDLWNNQISD--LSPLAGLTNLSVLLLGSNQISDIG--PLAGLTDLQRLHL 812
Query: 332 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 364
I D + LAGL++L L L QI D G
Sbjct: 813 YDNQIRD--IGPLAGLTNLWELRLYNNQIRDIG 843
Score = 47.4 bits (111), Expect = 0.013, Method: Composition-based stats.
Identities = 40/100 (40%), Positives = 57/100 (57%), Gaps = 8/100 (8%)
Query: 292 GLVNLTGL---CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 348
G+ +L+GL NL+ L L + S L L+GLT+L++++L ISD L LAGL+
Sbjct: 727 GIRDLSGLEYAVNLQHLYLQQNR-QISDLGPLAGLTDLQTLDLWNNQISD--LSPLAGLT 783
Query: 349 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 388
+L L L + QI+D G L LT L L L+ +I D G
Sbjct: 784 NLSVLLLGSNQISDIG--PLAGLTDLQRLHLYDNQIRDIG 821
Score = 47.0 bits (110), Expect = 0.017, Method: Composition-based stats.
Identities = 43/127 (33%), Positives = 71/127 (55%), Gaps = 13/127 (10%)
Query: 122 QGMKAFAGL---INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
+G++ +GL +NL L L++ +I L L GL L++L++ W N I SD+ PL+G
Sbjct: 726 RGIRDLSGLEYAVNLQHLYLQQNRQI-SDLGPLAGLTDLQTLDL-WNNQI--SDLSPLAG 781
Query: 179 LTNLKSLQISCSKVTDSG-IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
LTNL L + ++++D G +A L LQ+L L + + + L+ L +L+ L L
Sbjct: 782 LTNLSVLLLGSNQISDIGPLAGLTDLQRLHLYDNQ-----IRDIGPLAGLTNLWELRLYN 836
Query: 238 CQLSDDG 244
Q+ D G
Sbjct: 837 NQIRDIG 843
>gi|291000432|ref|XP_002682783.1| predicted protein [Naegleria gruberi]
gi|284096411|gb|EFC50039.1| predicted protein [Naegleria gruberi]
Length = 303
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 63/231 (27%), Positives = 112/231 (48%), Gaps = 26/231 (11%)
Query: 161 NIKWCNCITDS--DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
N+K+ + DS K +S + LKSL I + + D G ++ +++LT L
Sbjct: 97 NVKFSRRLLDSIEQAKFISEMKQLKSLTIDENGIGDEGAKFISEMKQLTSL--------- 147
Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 278
S++Y Q+ D+G + S++ L L++ N+I DE + + L
Sbjct: 148 ----------SVYY-----NQIGDEGAKSISEMNQLTSLDISGNQIGDEGAKSIIEVKQL 192
Query: 279 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
SL++ IG+EG ++G+ L L++S ++G G + +SG+ L S+N+ I D
Sbjct: 193 TSLDIYFNQIGEEGAKFISGMNQLTSLDISGNRIGDEGAKSISGMNQLTSLNVYNNRIGD 252
Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 389
+ + + LKSLN+ +I D +++ + LT LD+ RI D A
Sbjct: 253 EGAKSIIDMKQLKSLNIGGNRIGDEEAKSISEMKQLTSLDISNNRIGDEEA 303
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 80/154 (51%), Gaps = 4/154 (2%)
Query: 41 YPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLE 100
Y + D+ I S+ + L S+D+SG+ + D G + + L SLD F QI + G +
Sbjct: 151 YNQIGDEGAKSI-SEMNQLTSLDISGNQIGDEGAKSIIEVKQLTSLDIYFN-QIGEEGAK 208
Query: 101 HLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 160
+ G++ LTSL N I +G K+ +G+ L L++ G ++ + +L+SL
Sbjct: 209 FISGMNQLTSLDI-SGNRIGDEGAKSISGMNQLTSLNVYNNRIGDEGAKSIIDMKQLKSL 267
Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 194
NI N I D + K +S + L SL IS +++ D
Sbjct: 268 NI-GGNRIGDEEAKSISEMKQLTSLDISNNRIGD 300
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 53/97 (54%)
Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355
++ + LK L + + +G G + +S + L S+++ + I D + ++ ++ L SL++
Sbjct: 114 ISEMKQLKSLTIDENGIGDEGAKFISEMKQLTSLSVYYNQIGDEGAKSISEMNQLTSLDI 173
Query: 356 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
QI D G ++ + LT LD++ +I + GA ++
Sbjct: 174 SGNQIGDEGAKSIIEVKQLTSLDIYFNQIGEEGAKFI 210
>gi|343417958|emb|CCD19884.1| leucine-rich repeat region [Trypanosoma vivax Y486]
Length = 389
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 114/325 (35%), Positives = 169/325 (52%), Gaps = 33/325 (10%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
L + S+L++LD + C I+D + L LS+L +L AIT + + L +L L
Sbjct: 62 LSELSSLRTLDLSHCTGITD--VSPLSKLSSLRTLDLSHCTAIT--DVSPLSKLSSLRML 117
Query: 137 DLERCTRIHGGLVNLKGLMKLESL-NIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTD 194
DL CT G+ ++ L KL SL + +C +D+ PLS L++L++L +S C+ +TD
Sbjct: 118 DLSHCT----GITDVSPLSKLSSLRTLDLSHCTGITDVSPLSELSSLRTLDLSHCTGITD 173
Query: 195 SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL 254
++ L L L L+L C + LS L SL L+L+ C D + G
Sbjct: 174 --VSPLSELSSLRTLDLSHC-TGITDVSPLSKLSSLHELDLSHCTGITDVSLLYRFFGLD 230
Query: 255 KVLNLGFNE---ITDECLVHLKGLTNLESLNLDSC-GIGD-EGLVNLTGLCNLKCLELSD 309
K LG + ITD + L L+ L +L+L C GI D L L GLC L +LS
Sbjct: 231 K---LGLSHCTGITD--VSPLSKLSGLRTLDLSHCTGITDVSPLSKLGGLCEL---DLSH 282
Query: 310 TQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAA 367
G + + LS L++L ++LS TGI+D S L+ LSSL++L+L R ITD ++
Sbjct: 283 CT-GITDVSPLSKLSSLRKLDLSHCTGITDVS--PLSVLSSLRTLDLSHCRGITD--VSP 337
Query: 368 LTSLTGLTHLDLFGARITDSGAAYL 392
L++L+GL LDL G SG L
Sbjct: 338 LSTLSGLEVLDLSGCTGVRSGLESL 362
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 67/226 (29%), Positives = 110/226 (48%), Gaps = 33/226 (14%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNF 90
+L+ L L G+ D S+ SSL ++DLS + +TD + L S+L LD +
Sbjct: 159 SLRTLDLSHCTGITDVSP---LSELSSLRTLDLSHCTGITD--VSPLSKLSSLHELDLSH 213
Query: 91 CIQISDG------------GLEHLRGLSNLTSLS-------FRRNNAITAQGMKAFAGLI 131
C I+D GL H G+++++ LS ++ + + L
Sbjct: 214 CTGITDVSLLYRFFGLDKLGLSHCTGITDVSPLSKLSGLRTLDLSHCTGITDVSPLSKLG 273
Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKLESL-NIKWCNCITDSDMKPLSGLTNLKSLQIS-C 189
L +LDL CT G+ ++ L KL SL + +C +D+ PLS L++L++L +S C
Sbjct: 274 GLCELDLSHCT----GITDVSPLSKLSSLRKLDLSHCTGITDVSPLSVLSSLRTLDLSHC 329
Query: 190 SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
+TD ++ L L L +L+L GC + L+SL +L L YL+
Sbjct: 330 RGITD--VSPLSTLSGLEVLDLSGCTGVRSGLESLCSLSFLRYLSF 373
Score = 42.7 bits (99), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 62/133 (46%), Gaps = 7/133 (5%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
S L++LD + C I+D + L L L L IT + + L +L KLDL
Sbjct: 250 SGLRTLDLSHCTGITD--VSPLSKLGGLCELDLSHCTGIT--DVSPLSKLSSLRKLDLSH 305
Query: 141 CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL 200
CT I + L L L +L++ C ITD + PLS L+ L+ L +S SG+ L
Sbjct: 306 CTGI-TDVSPLSVLSSLRTLDLSHCRGITD--VSPLSTLSGLEVLDLSGCTGVRSGLESL 362
Query: 201 KGLQKLTLLNLEG 213
L L L+ G
Sbjct: 363 CSLSFLRYLSFLG 375
>gi|320166209|gb|EFW43108.1| ephrin type-B receptor 3 [Capsaspora owczarzaki ATCC 30864]
Length = 1219
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 95/306 (31%), Positives = 133/306 (43%), Gaps = 13/306 (4%)
Query: 76 HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135
HL D ++L FN QI+ GL+ LT L NN IT FA L L +
Sbjct: 54 HLGD----RTLSFN---QITSISANAFAGLTALTDLQLNNNN-ITIIPDYTFANLPALTE 105
Query: 136 LDL--ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT 193
L L T I + GL L LN C IT + L+ L ++Q+S +++T
Sbjct: 106 LHLFFNPITSISAN--SFAGLTVLNLLNSYNCQ-ITSIAANAFTDLSKLTNMQMSGNQIT 162
Query: 194 DSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS 253
G+ L +L L G +T+ + + L +L YL+L+ Q+S F + +
Sbjct: 163 SIAPNVFSGMSALKILYLNGNQITSISASAFTGLTALTYLSLDSNQISSIALNAFPGMSA 222
Query: 254 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 313
LK+L L N+IT L+ L+ L L+ I TGL L L L Q+
Sbjct: 223 LKILRLNINQITGISAGVFTDLSALKELWLNDNQITSISANAFTGLTALTFLRLYVNQIT 282
Query: 314 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 373
S + L L ++ LS I+ S GL++L L LDA QIT A T L
Sbjct: 283 SISPGAFTDLGALTTLILSTNKITSISENAFTGLTALTFLQLDANQITSISAGAFTDLGA 342
Query: 374 LTHLDL 379
LT L L
Sbjct: 343 LTTLIL 348
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 99/220 (45%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
N IT +GLT L LQ++ + +T L LT L+L P+T+ +S +
Sbjct: 63 NQITSISANAFAGLTALTDLQLNNNNITIIPDYTFANLPALTELHLFFNPITSISANSFA 122
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
L L LN CQ++ F+ + L + + N+IT G++ L+ L L+
Sbjct: 123 GLTVLNLLNSYNCQITSIAANAFTDLSKLTNMQMSGNQITSIAPNVFSGMSALKILYLNG 182
Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 345
I TGL L L L Q+ S L G++ L+ + L+ I+ S
Sbjct: 183 NQITSISASAFTGLTALTYLSLDSNQISSIALNAFPGMSALKILRLNINQITGISAGVFT 242
Query: 346 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
LS+LK L L+ QIT A T LT LT L L+ +IT
Sbjct: 243 DLSALKELWLNDNQITSISANAFTGLTALTFLRLYVNQIT 282
Score = 71.2 bits (173), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 85/314 (27%), Positives = 138/314 (43%), Gaps = 15/314 (4%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
S L ++ +SG+ +T S L+ L N QI+ GL+ LT LS +
Sbjct: 149 SKLTNMQMSGNQITSIAPNVFSGMSALKILYLN-GNQITSISASAFTGLTALTYLSLD-S 206
Query: 117 NAITAQGMKAFAGL--INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCN--CITDSD 172
N I++ + AF G+ + +++L++ + T I G+ L +L W N IT
Sbjct: 207 NQISSIALNAFPGMSALKILRLNINQITGISAGV-----FTDLSALKELWLNDNQITSIS 261
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
+GLT L L++ +++T L LT L L +T+ ++ + L +L +
Sbjct: 262 ANAFTGLTALTFLRLYVNQITSISPGAFTDLGALTTLILSTNKITSISENAFTGLTALTF 321
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
L L+ Q++ F+ +G+L L L N IT GLT L +L L +
Sbjct: 322 LQLDANQITSISAGAFTDLGALTTLILSINTITSISANAFTGLTALTALYLQQNQLDSIS 381
Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL---SFTGISDGSLRKLAGLSS 349
+ TGL L+ L L + S S LT L I L FT + G + L +S
Sbjct: 382 AIAFTGLTALRELWLQVNLITSISANAFSDLTTLVGIYLNRNPFTTLPPGLFKGLRNVSH 441
Query: 350 LKSLNLDARQITDT 363
L S +L Q++ +
Sbjct: 442 L-SRDLSTAQVSQS 454
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 75/284 (26%), Positives = 121/284 (42%), Gaps = 6/284 (2%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL--INLVKLDLERCTRIHGGLVN 150
QI+ LS LT++ N IT+ F+G+ + ++ L+ + T I
Sbjct: 136 QITSIAANAFTDLSKLTNMQMS-GNQITSIAPNVFSGMSALKILYLNGNQITSISASA-- 192
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
GL L L++ N I+ + G++ LK L+++ +++T L L L
Sbjct: 193 FTGLTALTYLSLD-SNQISSIALNAFPGMSALKILRLNINQITGISAGVFTDLSALKELW 251
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
L +T+ ++ + L +L +L L Q++ F+ +G+L L L N+IT
Sbjct: 252 LNDNQITSISANAFTGLTALTFLRLYVNQITSISPGAFTDLGALTTLILSTNKITSISEN 311
Query: 271 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 330
GLT L L LD+ I T L L L LS + S +GLT L ++
Sbjct: 312 AFTGLTALTFLQLDANQITSISAGAFTDLGALTTLILSINTITSISANAFTGLTALTALY 371
Query: 331 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 374
L + S GL++L+ L L IT A + LT L
Sbjct: 372 LQQNQLDSISAIAFTGLTALRELWLQVNLITSISANAFSDLTTL 415
>gi|168701211|ref|ZP_02733488.1| leucine-rich repeat domain protein [Gemmata obscuriglobus UQM 2246]
Length = 702
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 112/407 (27%), Positives = 174/407 (42%), Gaps = 76/407 (18%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR 103
V D M +A+ L ++DLS VTD+GL L NL++L F Q++ GL
Sbjct: 230 VTDAGMKHLAAV-EGLEALDLSRLRVTDAGLKELAGLKNLRALTLLFT-QVTGAGLRPFA 287
Query: 104 GLSNLTSLSF----------------RRNNAITAQG------MKAFAGLINLVKLDLERC 141
G + LT L+ R A+ +G + AGL L L +
Sbjct: 288 G-AGLTHLALSGSKVKAADVADVVACRALAALAVEGRWPADAVAQLAGLPELRSLHFQSD 346
Query: 142 TRIHGGLVNLKGLMKLESLNIKWC------------------------------------ 165
L L G KLE++++
Sbjct: 347 LLDGKVLAELSGASKLEAVHLATVTDDALAGLRRAGKLHTIPQARAERGRPAGPDEVVHL 406
Query: 166 ----NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL-----EGCPV 216
+T + +K L+ NL +L + ++V GI L L+KL+ L L + V
Sbjct: 407 DLSGQPVTGAGLKELTVFRNLDTLVLRNTRVA-GGIGALADLRKLSALTLPLYGGDDRAV 465
Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 276
T A + L+AL +L L+L+ L + I +L L+ F D L L
Sbjct: 466 TPAEMRRLAALDTLEELHLHGV-LVPGMARAVASIPNLTTLSGTFQ---DTDLREFPALK 521
Query: 277 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSFTG 335
+L +L GI DEG ++ + L+C+ LSDT+ + +G R L+ L NL+ + LS TG
Sbjct: 522 HLRALMTGGAGITDEGAWDVARMKRLECVSLSDTRRLTDAGARDLAALPNLKHLCLSRTG 581
Query: 336 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 382
++D ++ LAG+ +L++L L ++ G+AAL GL LDL GA
Sbjct: 582 VTDEGVQVLAGVKTLRTLWLSEIKVGPAGVAALGRHPGLVALDLSGA 628
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 103/386 (26%), Positives = 168/386 (43%), Gaps = 63/386 (16%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
L S+ L + VTD+G+ HL L++LD + ++++D GL+ L GL NL +L+
Sbjct: 218 PKLKSLRLERTQVTDAGMKHLAAVEGLEALDLSR-LRVTDAGLKELAGLKNLRALTLLFT 276
Query: 117 NAITAQGMKAFAG--LINL------VKL----DLERCTRIHG----------GLVNLKGL 154
+T G++ FAG L +L VK D+ C + + L GL
Sbjct: 277 Q-VTGAGLRPFAGAGLTHLALSGSKVKAADVADVVACRALAALAVEGRWPADAVAQLAGL 335
Query: 155 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLK------------- 201
+L SL+ + + + + LSG + L+++ ++ VTD +A L+
Sbjct: 336 PELRSLHFQ-SDLLDGKVLAELSGASKLEAVHLAT--VTDDALAGLRRAGKLHTIPQARA 392
Query: 202 ------GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G ++ L+L G PVT A L L+ +L L L +++ G + + L
Sbjct: 393 ERGRPAGPDEVVHLDLSGQPVTGAGLKELTVFRNLDTLVLRNTRVAG-GIGALADLRKLS 451
Query: 256 VLNLGF-----NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN-LTGLCNLKCLE--L 307
L L +T + L L LE L+L G+ G+ + + NL L
Sbjct: 452 ALTLPLYGGDDRAVTPAEMRRLAALDTLEELHLH--GVLVPGMARAVASIPNLTTLSGTF 509
Query: 308 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLA 366
DT LR L +L ++ GI+D +A + L+ ++L D R++TD G
Sbjct: 510 QDTD-----LREFPALKHLRALMTGGAGITDEGAWDVARMKRLECVSLSDTRRLTDAGAR 564
Query: 367 ALTSLTGLTHLDLFGARITDSGAAYL 392
L +L L HL L +TD G L
Sbjct: 565 DLAALPNLKHLCLSRTGVTDEGVQVL 590
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 96/332 (28%), Positives = 147/332 (44%), Gaps = 23/332 (6%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S S L +V L+ VTD L L+ L ++ + G + + L LS
Sbjct: 357 SGASKLEAVHLA--TVTDDALAGLRRAGKLHTIPQARAERGRPAGPDEVVHLD----LS- 409
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC----NCIT 169
+T G+K NL L L R TR+ GG+ L L KL +L + +T
Sbjct: 410 --GQPVTGAGLKELTVFRNLDTLVL-RNTRVAGGIGALADLRKLSALTLPLYGGDDRAVT 466
Query: 170 DSDMKPLSGLTNLKSLQISCSKVTDSGIAY-LKGLQKLTLLNLEGCPVTAACLDSLSALG 228
++M+ L+ L L+ L + V G+A + + LT L G L AL
Sbjct: 467 PAEMRRLAALDTLEELHLHGVLV--PGMARAVASIPNLT--TLSGT-FQDTDLREFPALK 521
Query: 229 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG-FNEITDECLVHLKGLTNLESLNLDSCG 287
L L ++D+G +++ L+ ++L +TD L L NL+ L L G
Sbjct: 522 HLRALMTGGAGITDEGAWDVARMKRLECVSLSDTRRLTDAGARDLAALPNLKHLCLSRTG 581
Query: 288 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 347
+ DEG+ L G+ L+ L LS+ +VG +G+ L L +++LS G G LAG+
Sbjct: 582 VTDEGVQVLAGVKTLRTLWLSEIKVGPAGVAALGRHPGLVALDLS--GAPRGEAEPLAGI 639
Query: 348 SSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
++L+ LNL + LAAL L L L L
Sbjct: 640 TTLEYLNLAGALTGERTLAALAKLPHLRVLHL 671
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 75/138 (54%), Gaps = 1/138 (0%)
Query: 247 KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 306
+ +KI ++ + L + T L L L L+L +GD+ L L LK L
Sbjct: 165 EIAKIDNVTYIGLSSSRDTGAKLRALAAAKGLTHLDLSFSRVGDDDLKLLAAFPKLKSLR 224
Query: 307 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 366
L TQV +G++HL+ + LE+++LS ++D L++LAGL +L++L L Q+T GL
Sbjct: 225 LERTQVTDAGMKHLAAVEGLEALDLSRLRVTDAGLKELAGLKNLRALTLLFTQVTGAGLR 284
Query: 367 ALTSLTGLTHLDLFGARI 384
GLTHL L G+++
Sbjct: 285 PFAG-AGLTHLALSGSKV 301
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 73/148 (49%), Gaps = 5/148 (3%)
Query: 230 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 289
L +L+L+ ++ DD + + LK L L ++TD + HL + LE+L+L +
Sbjct: 196 LTHLDLSFSRVGDDDLKLLAAFPKLKSLRLERTQVTDAGMKHLAAVEGLEALDLSRLRVT 255
Query: 290 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 349
D GL L GL NL+ L L TQV +GLR +G L + LS + + + + +
Sbjct: 256 DAGLKELAGLKNLRALTLLFTQVTGAGLRPFAG-AGLTHLALSGSKVKAADVADVVACRA 314
Query: 350 LKSLNLDARQITDTGLAALTSLTGLTHL 377
L +L ++ R D A+ L GL L
Sbjct: 315 LAALAVEGRWPAD----AVAQLAGLPEL 338
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 105/221 (47%), Gaps = 9/221 (4%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
+ D D+K L+ LKSL++ ++VTD+G+ +L ++ L L+L VT A L L+ L
Sbjct: 206 VGDDDLKLLAAFPKLKSLRLERTQVTDAGMKHLAAVEGLEALDLSRLRVTDAGLKELAGL 265
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
+L L L Q++ G F+ G L L L +++ + + L +L ++
Sbjct: 266 KNLRALTLLFTQVTGAGLRPFAGAG-LTHLALSGSKVKAADVADVVACRALAALAVEGRW 324
Query: 288 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 347
D + L GL L+ L + L LSG + LE+++L+ ++D + LAGL
Sbjct: 325 PAD-AVAQLAGLPELRSLHFQSDLLDGKVLAELSGASKLEAVHLAT--VTDDA---LAGL 378
Query: 348 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 388
L+ + + G A + HLDL G +T +G
Sbjct: 379 RRAGKLHTIPQARAERGRPA--GPDEVVHLDLSGQPVTGAG 417
>gi|158336627|ref|YP_001517801.1| internalin A protein [Acaryochloris marina MBIC11017]
gi|158306868|gb|ABW28485.1| internalin A protein [Acaryochloris marina MBIC11017]
Length = 627
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 124/431 (28%), Positives = 192/431 (44%), Gaps = 83/431 (19%)
Query: 23 VSLEAFRDCALQDLCLGQYPGVNDKWM-DVIASQGSSLLS------VDLSGSDVTDSGLI 75
+SL+ L D + QYP ++ ++ D+++ + S + LSG DVT + +
Sbjct: 55 LSLQGVDGHELVDASIEQYPHLSALYLFDIVSPEIVPFASLPGLSTIALSGQDVTAASYL 114
Query: 76 H--------------------LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
L D NL LD + QI+D L ++ L LTSL
Sbjct: 115 QPTTNLTTVYLKTTNISDYSFLSDLKNLTHLDLSNN-QIAD--LSFIQDLKQLTSLGLAS 171
Query: 116 NNAITAQGMKA----------------FAGLINLVKL-DLERCTRIHGGLVNLKGLMKLE 158
N + G+K ++ L+NL +L L R L L+ L L
Sbjct: 172 NKIVDISGLKDLTKLNTLNLRSNAIDDYSVLLNLKELRQLTVSVREATDLAFLQDLKDLT 231
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
L++ + + I SD+ L L L L + +++ S IA L LQ+LT L+L ++
Sbjct: 232 HLDLSYNHWI--SDISVLRNLPKLTHLDLGSNQI--SNIAVLLDLQQLTHLSLSSNQISD 287
Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 278
+ L L L L+++ +++D + L L++ NE++D + L+ LT L
Sbjct: 288 VSV--LQTLQGLERLDVSANEIADIAI--LQNLQGLTHLDISSNEVSDISV--LQDLTTL 341
Query: 279 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
LN+ S I D + L GL L L++SD Q+ S + L GL +L S+NLS+ +SD
Sbjct: 342 TQLNVSSNEIIDYSV--LQGLTQLTSLDVSDNQM--SEISDLQGLHSLTSLNLSYNQLSD 397
Query: 339 GS----LRKLAGLS----------------SLKSLNLDARQITDTGLAALTSLTGLTHLD 378
S L++LA L+ L +LNL QITD L+ L L GL LD
Sbjct: 398 ISVLQDLKQLATLNLSYNPVSDIAVLQNFKDLTTLNLSFTQITD--LSHLQDLKGLISLD 455
Query: 379 LFGARITDSGA 389
L +ITD A
Sbjct: 456 LHSNQITDISA 466
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 103/342 (30%), Positives = 156/342 (45%), Gaps = 49/342 (14%)
Query: 62 VDLSGSDVTD-------SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
+D+S +++ D GL HL SN ++SD + L+ L+ LT L+
Sbjct: 300 LDVSANEIADIAILQNLQGLTHLDISSN----------EVSDISV--LQDLTTLTQLNVS 347
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
N I GL L LD+ + +L+GL L SLN+ + SD+
Sbjct: 348 SNEII---DYSVLQGLTQLTSLDVSDNQM--SEISDLQGLHSLTSLNLSYNQL---SDIS 399
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
L L L +L +S + V+D IA L+ + LT LNL +T L L L L L+
Sbjct: 400 VLQDLKQLATLNLSYNPVSD--IAVLQNFKDLTTLNLSFTQITD--LSHLQDLKGLISLD 455
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
L+ Q++D + L LN+ N+++D + L+ L L SLNL I D +
Sbjct: 456 LHSNQITD--ISALQDLEGLYRLNVSDNQLSD--IAALRKLKGLFSLNLSINQILD--IA 509
Query: 295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS-LRKLAGLSSLKSL 353
L L L L +S Q+ S + L GLT L S++L I+D S L+ + GL S
Sbjct: 510 ALQDLTRLTSLNVSHNQL--SDISVLQGLTRLNSLDLGANQIADISVLQNIPGLFS---- 563
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRSK 395
LD R + ++ GLT L+L +I+ S +LR +
Sbjct: 564 -LDLRF---SDVSVFQDFKGLTSLNLSSNQIS-SVPEWLREQ 600
Score = 37.7 bits (86), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 77/160 (48%), Gaps = 15/160 (9%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L +++LS + +TD L HL+D L SLD + QI+D + L+ L L L+ N
Sbjct: 429 LTTLNLSFTQITD--LSHLQDLKGLISLDLH-SNQITD--ISALQDLEGLYRLNVSDNQL 483
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
++ GL +L L + + I L+ L +L SLN+ SD+ L G
Sbjct: 484 SDIAALRKLKGLFSL-NLSINQILDIAA----LQDLTRLTSLNVSHNQL---SDISVLQG 535
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
LT L SL + +++ D I+ L+ + L L+L V+
Sbjct: 536 LTRLNSLDLGANQIAD--ISVLQNIPGLFSLDLRFSDVSV 573
>gi|255523032|ref|ZP_05390004.1| leucine-rich repeat protein [Clostridium carboxidivorans P7]
gi|255513147|gb|EET89415.1| leucine-rich repeat protein [Clostridium carboxidivorans P7]
Length = 676
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 101/350 (28%), Positives = 176/350 (50%), Gaps = 53/350 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++L S++ D + LK+ LQS+D ++ +ISD + L+ L+NL L+ N
Sbjct: 180 TNLKQLNLRESEIND--ISELKNLVKLQSIDLSYN-KISD--ISALKNLTNLKKLNLGNN 234
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+ + + L NL +L+L G + E+ + + N SD+ L
Sbjct: 235 ---KVRDISVLSKLTNLQELNL--------GYI---PYHDFETPDPE-ANYNEISDISAL 279
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT--AACLDSLSALGSLFYLN 234
LTNL++L + +K+ D + LKGL L L+L G ++ ++ ++ L L SL LN
Sbjct: 280 KNLTNLQTLNLGYTKIKD--LNALKGLNNLKTLDLSGNQISDISSIVNVLKELTSLNDLN 337
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG-- 292
L+ ++S+ ++ +K+ SLK+L L N+I++ + LKGL+NL++L+L S I D
Sbjct: 338 LSTNEISN--IDELNKLTSLKMLKLNSNKISN--INRLKGLSNLQTLDLSSNQISDTANT 393
Query: 293 -------------------LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333
+ L L NLK L L ++ S + L GL+NL+ I+LS+
Sbjct: 394 LKELNNLNDLNLSNNQISNIGELNKLTNLKALNLYYNKI--SDISALKGLSNLQMIDLSY 451
Query: 334 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 383
ISD S+ L++L+ L L + I+D + AL + H++ +
Sbjct: 452 NEISDISV--FENLANLRELILLSNPISDVDIQALKNALPQCHINEIPVK 499
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 94/292 (32%), Positives = 145/292 (49%), Gaps = 50/292 (17%)
Query: 124 MKAFAG---LINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
+K F+G L NL +L+L R + I+ + LK L+KL+S+++ + SD+ L LT
Sbjct: 170 IKDFSGIENLTNLKQLNL-RESEIND-ISELKNLVKLQSIDLSYNKI---SDISALKNLT 224
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
NLK L + +KV D I+ L L L LNL P A N ++
Sbjct: 225 NLKKLNLGNNKVRD--ISVLSKLTNLQELNLGYIPYHDFETPDPEA---------NYNEI 273
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EGLVN-LTG 298
SD + +L+ LNLG+ +I D L LKGL NL++L+L I D +VN L
Sbjct: 274 SD--ISALKNLTNLQTLNLGYTKIKD--LNALKGLNNLKTLDLSGNQISDISSIVNVLKE 329
Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
L +L L LS ++ S + L+ LT+L+ + L+ IS+ + +L GLS+L++L+L +
Sbjct: 330 LTSLNDLNLSTNEI--SNIDELNKLTSLKMLKLNSNKISN--INRLKGLSNLQTLDLSSN 385
Query: 359 QITDTG---------------------LAALTSLTGLTHLDLFGARITDSGA 389
QI+DT + L LT L L+L+ +I+D A
Sbjct: 386 QISDTANTLKELNNLNDLNLSNNQISNIGELNKLTNLKALNLYYNKISDISA 437
>gi|301756605|ref|XP_002914145.1| PREDICTED: f-box/LRR-repeat protein 14-like [Ailuropoda
melanoleuca]
Length = 420
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 99/315 (31%), Positives = 169/315 (53%), Gaps = 32/315 (10%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
++ +N++SL+ + C ++D GL H ++ + +L +L+ IT + A + L
Sbjct: 86 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 145
Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LK 183
L+L C+ I G L+ GL +L+SLN++ C ++D + L+G+T L+
Sbjct: 146 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLE 205
Query: 184 SLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-Q 239
L + C K+TD + ++ +GL L LLNL C ++ A L LS +GSL LNL C
Sbjct: 206 QLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDN 265
Query: 240 LSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGL-- 293
+SD G + +GSL++ L++ F +++ D+ L ++ +GL L+SL+L SC I D+G+
Sbjct: 266 ISDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINR 324
Query: 294 --VNLTGLCNL---KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 348
+ GL L +C+ ++D + HLS LT ++ T I+ L ++ L
Sbjct: 325 MVRQMHGLRTLNIGQCVRITDKGLELIA-EHLSQLTGIDLYGC--TRITKRGLERITQLP 381
Query: 349 SLKSLNLDARQITDT 363
LK LNL Q+TD+
Sbjct: 382 CLKVLNLGLWQMTDS 396
Score = 74.7 bits (182), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 95/302 (31%), Positives = 152/302 (50%), Gaps = 38/302 (12%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + G ++ + L +
Sbjct: 68 RGIRRVQILSLRRSLSYVIQGMA------NIESLNLSGCYNLTDNGLGHAFVQEIGSLRA 121
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LN+ C ITDS + ++ LK L++ CS +T++G+ + GLQ+L LNL C
Sbjct: 122 LNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSC 179
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL-K 273
LS +G + R + +GC +G ++ ++TD L H+ +
Sbjct: 180 R-------HLSDVGIGHLAGMTRS--AAEGC-----LGLEQLTLQDCQKLTDLSLKHISR 225
Query: 274 GLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLEL-SDTQVGSSGLRHLS-GLTNLESIN 330
GLT L LNL CG I D GL++L+ + +L+ L L S + +G+ HL+ G L ++
Sbjct: 226 GLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLD 285
Query: 331 LSFT-GISDGSLRKLA-GLSSLKSLNLDARQITDTGLAALT-SLTGLTHLDLFG-ARITD 386
+SF + D SL +A GL LKSL+L + I+D G+ + + GL L++ RITD
Sbjct: 286 VSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITD 345
Query: 387 SG 388
G
Sbjct: 346 KG 347
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 103/204 (50%), Gaps = 29/204 (14%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ + + L+ L+ +FC ISD GL HL + +L SL+ R + I+ G+
Sbjct: 215 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 274
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C ++ + +GL L+SL++ C+ D + + + L++
Sbjct: 275 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 334
Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
L I C ++TD G+ + + L +LT ++L GC +++
Sbjct: 335 LNIGQCVRITDKGLELIAEHLSQLTGIDLYGCT-----------------------RITK 371
Query: 243 DGCEKFSKIGSLKVLNLGFNEITD 266
G E+ +++ LKVLNLG ++TD
Sbjct: 372 RGLERITQLPCLKVLNLGLWQMTD 395
>gi|332249163|ref|XP_003273734.1| PREDICTED: F-box/LRR-repeat protein 14 isoform 2 [Nomascus
leucogenys]
gi|119609335|gb|EAW88929.1| F-box and leucine-rich repeat protein 14, isoform CRA_b [Homo
sapiens]
Length = 401
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 99/315 (31%), Positives = 169/315 (53%), Gaps = 32/315 (10%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
++ +N++SL+ + C ++D GL H ++ + +L +L+ IT + A + L
Sbjct: 86 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 145
Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LK 183
L+L C+ I G L+ GL +L+SLN++ C ++D + L+G+T L+
Sbjct: 146 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLE 205
Query: 184 SLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-Q 239
L + C K+TD + ++ +GL L LLNL C ++ A L LS +GSL LNL C
Sbjct: 206 QLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDN 265
Query: 240 LSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGL-- 293
+SD G + +GSL++ L++ F +++ D+ L ++ +GL L+SL+L SC I D+G+
Sbjct: 266 ISDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINR 324
Query: 294 --VNLTGLCNL---KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 348
+ GL L +C+ ++D + HLS LT ++ T I+ L ++ L
Sbjct: 325 MVRQMHGLRTLNIGQCVRITDKGLELIA-EHLSQLTGIDLYG--CTRITKRGLERITQLP 381
Query: 349 SLKSLNLDARQITDT 363
LK LNL Q+TD+
Sbjct: 382 CLKVLNLGLWQMTDS 396
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 95/302 (31%), Positives = 152/302 (50%), Gaps = 38/302 (12%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + G ++ + L +
Sbjct: 68 RGIRRVQILSLRRSLSYVIQGMA------NIESLNLSGCYNLTDNGLGHAFVQEIGSLRA 121
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LN+ C ITDS + ++ LK L++ CS +T++G+ + GLQ+L LNL C
Sbjct: 122 LNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSC 179
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL-K 273
LS +G + R + +GC +G ++ ++TD L H+ +
Sbjct: 180 R-------HLSDVGIGHLAGMTRS--AAEGC-----LGLEQLTLQDCQKLTDLSLKHISR 225
Query: 274 GLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLEL-SDTQVGSSGLRHLS-GLTNLESIN 330
GLT L LNL CG I D GL++L+ + +L+ L L S + +G+ HL+ G L ++
Sbjct: 226 GLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLD 285
Query: 331 LSFT-GISDGSLRKLA-GLSSLKSLNLDARQITDTGLAALT-SLTGLTHLDLFG-ARITD 386
+SF + D SL +A GL LKSL+L + I+D G+ + + GL L++ RITD
Sbjct: 286 VSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITD 345
Query: 387 SG 388
G
Sbjct: 346 KG 347
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 103/204 (50%), Gaps = 29/204 (14%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ + + L+ L+ +FC ISD GL HL + +L SL+ R + I+ G+
Sbjct: 215 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 274
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C ++ + +GL L+SL++ C+ D + + + L++
Sbjct: 275 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 334
Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
L I C ++TD G+ + + L +LT ++L GC +++
Sbjct: 335 LNIGQCVRITDKGLELIAEHLSQLTGIDLYGCT-----------------------RITK 371
Query: 243 DGCEKFSKIGSLKVLNLGFNEITD 266
G E+ +++ LKVLNLG ++TD
Sbjct: 372 RGLERITQLPCLKVLNLGLWQMTD 395
>gi|395845616|ref|XP_003795523.1| PREDICTED: F-box/LRR-repeat protein 14 isoform 2 [Otolemur
garnettii]
Length = 401
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 99/315 (31%), Positives = 169/315 (53%), Gaps = 32/315 (10%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
++ +N++SL+ + C ++D GL H ++ + +L +L+ IT + A + L
Sbjct: 86 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 145
Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LK 183
L+L C+ I G L+ GL +L+SLN++ C ++D + L+G+T L+
Sbjct: 146 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLE 205
Query: 184 SLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-Q 239
L + C K+TD + ++ +GL L LLNL C ++ A L LS +GSL LNL C
Sbjct: 206 QLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDN 265
Query: 240 LSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGL-- 293
+SD G + +GSL++ L++ F +++ D+ L ++ +GL L+SL+L SC I D+G+
Sbjct: 266 ISDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINR 324
Query: 294 --VNLTGLCNL---KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 348
+ GL L +C+ ++D + HLS LT ++ T I+ L ++ L
Sbjct: 325 MVRQMHGLRTLNIGQCVRITDKGLELIA-EHLSQLTGIDLYGC--TRITKRGLERITQLP 381
Query: 349 SLKSLNLDARQITDT 363
LK LNL Q+TD+
Sbjct: 382 CLKVLNLGLWQMTDS 396
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 95/302 (31%), Positives = 152/302 (50%), Gaps = 38/302 (12%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + G ++ + L +
Sbjct: 68 RGIRRVQILSLRRSLSYVIQGMA------NIESLNLSGCYNLTDNGLGHAFVQEIGSLRA 121
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LN+ C ITDS + ++ LK L++ CS +T++G+ + GLQ+L LNL C
Sbjct: 122 LNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSC 179
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL-K 273
LS +G + R + +GC +G ++ ++TD L H+ +
Sbjct: 180 R-------HLSDVGIGHLAGMTRS--AAEGC-----LGLEQLTLQDCQKLTDLSLKHISR 225
Query: 274 GLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLEL-SDTQVGSSGLRHLS-GLTNLESIN 330
GLT L LNL CG I D GL++L+ + +L+ L L S + +G+ HL+ G L ++
Sbjct: 226 GLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLD 285
Query: 331 LSF-TGISDGSLRKLA-GLSSLKSLNLDARQITDTGLAALT-SLTGLTHLDLFG-ARITD 386
+SF + D SL +A GL LKSL+L + I+D G+ + + GL L++ RITD
Sbjct: 286 VSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITD 345
Query: 387 SG 388
G
Sbjct: 346 KG 347
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 103/204 (50%), Gaps = 29/204 (14%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ + + L+ L+ +FC ISD GL HL + +L SL+ R + I+ G+
Sbjct: 215 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 274
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C ++ + +GL L+SL++ C+ D + + + L++
Sbjct: 275 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 334
Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
L I C ++TD G+ + + L +LT ++L GC +++
Sbjct: 335 LNIGQCVRITDKGLELIAEHLSQLTGIDLYGCT-----------------------RITK 371
Query: 243 DGCEKFSKIGSLKVLNLGFNEITD 266
G E+ +++ LKVLNLG ++TD
Sbjct: 372 RGLERITQLPCLKVLNLGLWQMTD 395
>gi|290997297|ref|XP_002681218.1| leucine-rich repeat ribonuclease inhibitor family protein
[Naegleria gruberi]
gi|284094841|gb|EFC48474.1| leucine-rich repeat ribonuclease inhibitor family protein
[Naegleria gruberi]
Length = 342
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 108/217 (49%)
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
++ + L SL I +++ D G Y+ +++LT LN+ + +S + L L++
Sbjct: 124 VTEMKQLTSLNIRGNRIGDEGAKYISEMKQLTSLNIRENEIGDEGAKFISEMKQLTSLDI 183
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
++ D+G + S++ L LN+ + I E + + L LN+ IG EG
Sbjct: 184 RGNRIGDEGAKYISEMKQLTSLNIYYTLIGIEGAKFISEMKQLTLLNIYYNLIGIEGAKF 243
Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355
++ + L L++S+ ++G G + +S + L S+N+++ I D + ++ + L SLN+
Sbjct: 244 ISEMKQLTLLDISNNEIGIEGAKFISEMKQLTSLNINYNEIGDRGAKFISEMKQLTSLNI 303
Query: 356 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
D G ++ + LT LD+ RI D GA Y+
Sbjct: 304 SYNITGDRGAKFISEMKQLTSLDISNNRICDEGAKYI 340
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 102/228 (44%), Gaps = 26/228 (11%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
+I D G +++ + LTSL+ R N I +G K + + L LD I G
Sbjct: 139 RIGDEGAKYISEMKQLTSLNIRE-NEIGDEGAKFISEMKQLTSLD------IRG------ 185
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
N I D K +S + L SL I + + G ++ +++LTLLN+
Sbjct: 186 -------------NRIGDEGAKYISEMKQLTSLNIYYTLIGIEGAKFISEMKQLTLLNIY 232
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
+ +S + L L+++ ++ +G + S++ L LN+ +NEI D +
Sbjct: 233 YNLIGIEGAKFISEMKQLTLLDISNNEIGIEGAKFISEMKQLTSLNINYNEIGDRGAKFI 292
Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 320
+ L SLN+ GD G ++ + L L++S+ ++ G +++
Sbjct: 293 SEMKQLTSLNISYNITGDRGAKFISEMKQLTSLDISNNRICDEGAKYI 340
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 76/158 (48%), Gaps = 3/158 (1%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L S+D+ G+ + D G ++ + L SL+ + + I G + + + LT L+
Sbjct: 173 SEMKQLTSLDIRGNRIGDEGAKYISEMKQLTSLNIYYTL-IGIEGAKFISEMKQLTLLNI 231
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
N I +G K + + L LD+ G + + +L SLNI + N I D
Sbjct: 232 YY-NLIGIEGAKFISEMKQLTLLDISNNEIGIEGAKFISEMKQLTSLNINY-NEIGDRGA 289
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
K +S + L SL IS + D G ++ +++LT L++
Sbjct: 290 KFISEMKQLTSLNISYNITGDRGAKFISEMKQLTSLDI 327
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 49/239 (20%), Positives = 95/239 (39%), Gaps = 51/239 (21%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L S+++ +++ D G + + L SLD +I D G +++ + LTSL+
Sbjct: 149 SEMKQLTSLNIRENEIGDEGAKFISEMKQLTSLDIR-GNRIGDEGAKYISEMKQLTSLN- 206
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
I+ L+ ++G
Sbjct: 207 ------------------------------IYYTLIGIEG-------------------A 217
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
K +S + L L I + + G ++ +++LTLL++ + +S + L L
Sbjct: 218 KFISEMKQLTLLNIYYNLIGIEGAKFISEMKQLTLLDISNNEIGIEGAKFISEMKQLTSL 277
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
N+N ++ D G + S++ L LN+ +N D + + L SL++ + I DEG
Sbjct: 278 NINYNEIGDRGAKFISEMKQLTSLNISYNITGDRGAKFISEMKQLTSLDISNNRICDEG 336
>gi|18204097|gb|AAH21329.1| F-box and leucine-rich repeat protein 14 [Mus musculus]
Length = 400
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 99/315 (31%), Positives = 169/315 (53%), Gaps = 32/315 (10%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
++ +N++SL+ + C ++D GL H ++ + +L +L+ IT + A + L
Sbjct: 86 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 145
Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LK 183
L+L C+ I G L+ GL +L+SLN++ C ++D + L+G+T L+
Sbjct: 146 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLE 205
Query: 184 SLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-Q 239
L + C K+TD + ++ +GL L LLNL C ++ A L LS +GSL LNL C
Sbjct: 206 QLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDN 265
Query: 240 LSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGL-- 293
+SD G + +GSL++ L++ F +++ D+ L ++ +GL L+SL+L SC I D+G+
Sbjct: 266 ISDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINR 324
Query: 294 --VNLTGLCNL---KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 348
+ GL L +C+ ++D + HLS LT ++ T I+ L ++ L
Sbjct: 325 MVRQMHGLRTLNIGQCVRITDKGLELIA-EHLSQLTGIDLYGC--TRITKRGLERITQLP 381
Query: 349 SLKSLNLDARQITDT 363
LK LNL Q+TD+
Sbjct: 382 CLKVLNLGLWQMTDS 396
Score = 74.7 bits (182), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 95/302 (31%), Positives = 152/302 (50%), Gaps = 38/302 (12%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + G ++ + L +
Sbjct: 68 RGIRRVQILSLRRSLSYVIQGMA------NIESLNLSGCYNLTDNGLGHAFVQEIGSLRA 121
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LN+ C ITDS + ++ LK L++ CS +T++G+ + GLQ+L LNL C
Sbjct: 122 LNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSC 179
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL-K 273
LS +G + R + +GC +G ++ ++TD L H+ +
Sbjct: 180 R-------HLSDVGIGHLAGMTRS--AAEGC-----LGLEQLTLQDCQKLTDLSLKHISR 225
Query: 274 GLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLEL-SDTQVGSSGLRHLS-GLTNLESIN 330
GLT L LNL CG I D GL++L+ + +L+ L L S + +G+ HL+ G L ++
Sbjct: 226 GLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLD 285
Query: 331 LSF-TGISDGSLRKLA-GLSSLKSLNLDARQITDTGLAALT-SLTGLTHLDLFG-ARITD 386
+SF + D SL +A GL LKSL+L + I+D G+ + + GL L++ RITD
Sbjct: 286 VSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITD 345
Query: 387 SG 388
G
Sbjct: 346 KG 347
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 103/204 (50%), Gaps = 29/204 (14%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ + + L+ L+ +FC ISD GL HL + +L SL+ R + I+ G+
Sbjct: 215 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 274
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C ++ + +GL L+SL++ C+ D + + + L++
Sbjct: 275 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 334
Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
L I C ++TD G+ + + L +LT ++L GC +++
Sbjct: 335 LNIGQCVRITDKGLELIAEHLSQLTGIDLYGCT-----------------------RITK 371
Query: 243 DGCEKFSKIGSLKVLNLGFNEITD 266
G E+ +++ LKVLNLG ++TD
Sbjct: 372 RGLERITQLPCLKVLNLGLWQMTD 395
>gi|168700135|ref|ZP_02732412.1| hypothetical protein GobsU_11445 [Gemmata obscuriglobus UQM 2246]
Length = 120
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 54/120 (45%), Positives = 74/120 (61%), Gaps = 3/120 (2%)
Query: 269 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 328
L LKGLT L +L + D G+ L+GL L LEL+ TQV +G++ LSGLT L +
Sbjct: 4 LAALKGLTQL---DLFDTKVTDVGVKELSGLKGLTRLELTFTQVTDAGVKALSGLTALTT 60
Query: 329 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 388
++L FT ++D ++ L+GL L LNL +TD G+ AL L GLT LDL R+TD+G
Sbjct: 61 LDLGFTKVTDAGVKALSGLKHLIQLNLGVTVVTDAGVKALAGLKGLTILDLSFTRVTDAG 120
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 68/119 (57%), Gaps = 4/119 (3%)
Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 207
L LKGL +L+ + K +TD +K LSGL L L+++ ++VTD+G+ L GL LT
Sbjct: 4 LAALKGLTQLDLFDTK----VTDVGVKELSGLKGLTRLELTFTQVTDAGVKALSGLTALT 59
Query: 208 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 266
L+L VT A + +LS L L LNL ++D G + + + L +L+L F +TD
Sbjct: 60 TLDLGFTKVTDAGVKALSGLKHLIQLNLGVTVVTDAGVKALAGLKGLTILDLSFTRVTD 118
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 67/121 (55%), Gaps = 1/121 (0%)
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
MK A L L +LDL G+ L GL L L + + +TD+ +K LSGLT L
Sbjct: 1 MKELAALKGLTQLDLFDTKVTDVGVKELSGLKGLTRLELTFTQ-VTDAGVKALSGLTALT 59
Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
+L + +KVTD+G+ L GL+ L LNL VT A + +L+ L L L+L+ +++D
Sbjct: 60 TLDLGFTKVTDAGVKALSGLKHLIQLNLGVTVVTDAGVKALAGLKGLTILDLSFTRVTDA 119
Query: 244 G 244
G
Sbjct: 120 G 120
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 68/118 (57%)
Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 280
+ L+AL L L+L +++D G ++ S + L L L F ++TD + L GLT L +
Sbjct: 1 MKELAALKGLTQLDLFDTKVTDVGVKELSGLKGLTRLELTFTQVTDAGVKALSGLTALTT 60
Query: 281 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
L+L + D G+ L+GL +L L L T V +G++ L+GL L ++LSFT ++D
Sbjct: 61 LDLGFTKVTDAGVKALSGLKHLIQLNLGVTVVTDAGVKALAGLKGLTILDLSFTRVTD 118
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 63/120 (52%)
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
MK L+ L L L + +KVTD G+ L GL+ LT L L VT A + +LS L +L
Sbjct: 1 MKELAALKGLTQLDLFDTKVTDVGVKELSGLKGLTRLELTFTQVTDAGVKALSGLTALTT 60
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
L+L +++D G + S + L LNLG +TD + L GL L L+L + D G
Sbjct: 61 LDLGFTKVTDAGVKALSGLKHLIQLNLGVTVVTDAGVKALAGLKGLTILDLSFTRVTDAG 120
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 66/120 (55%)
Query: 245 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 304
++ + + L L+L ++TD + L GL L L L + D G+ L+GL L
Sbjct: 1 MKELAALKGLTQLDLFDTKVTDVGVKELSGLKGLTRLELTFTQVTDAGVKALSGLTALTT 60
Query: 305 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 364
L+L T+V +G++ LSGL +L +NL T ++D ++ LAGL L L+L ++TD G
Sbjct: 61 LDLGFTKVTDAGVKALSGLKHLIQLNLGVTVVTDAGVKALAGLKGLTILDLSFTRVTDAG 120
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 59/98 (60%)
Query: 295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 354
L L L L+L DT+V G++ LSGL L + L+FT ++D ++ L+GL++L +L+
Sbjct: 3 ELAALKGLTQLDLFDTKVTDVGVKELSGLKGLTRLELTFTQVTDAGVKALSGLTALTTLD 62
Query: 355 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
L ++TD G+ AL+ L L L+L +TD+G L
Sbjct: 63 LGFTKVTDAGVKALSGLKHLIQLNLGVTVVTDAGVKAL 100
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 61/121 (50%), Gaps = 3/121 (2%)
Query: 76 HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135
L L LD F +++D G++ L GL LT L +T G+KA +GL L
Sbjct: 3 ELAALKGLTQLDL-FDTKVTDVGVKELSGLKGLTRLELTFTQ-VTDAGVKALSGLTALTT 60
Query: 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS 195
LDL G+ L GL L LN+ +TD+ +K L+GL L L +S ++VTD+
Sbjct: 61 LDLGFTKVTDAGVKALSGLKHLIQLNL-GVTVVTDAGVKALAGLKGLTILDLSFTRVTDA 119
Query: 196 G 196
G
Sbjct: 120 G 120
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 46/76 (60%)
Query: 317 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 376
++ L+ L L ++L T ++D +++L+GL L L L Q+TD G+ AL+ LT LT
Sbjct: 1 MKELAALKGLTQLDLFDTKVTDVGVKELSGLKGLTRLELTFTQVTDAGVKALSGLTALTT 60
Query: 377 LDLFGARITDSGAAYL 392
LDL ++TD+G L
Sbjct: 61 LDLGFTKVTDAGVKAL 76
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 49/86 (56%), Gaps = 3/86 (3%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L ++L+ + VTD+G+ L + L +LD F +++D G++ L GL +L L+
Sbjct: 34 LTRLELTFTQVTDAGVKALSGLTALTTLDLGFT-KVTDAGVKALSGLKHLIQLNLGV-TV 91
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRI 144
+T G+KA AGL L LDL TR+
Sbjct: 92 VTDAGVKALAGLKGLTILDLS-FTRV 116
>gi|410963525|ref|XP_003988315.1| PREDICTED: F-box/LRR-repeat protein 14, partial [Felis catus]
Length = 411
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 99/315 (31%), Positives = 169/315 (53%), Gaps = 32/315 (10%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
++ +N++SL+ + C ++D GL H ++ + +L +L+ IT + A + L
Sbjct: 77 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 136
Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LK 183
L+L C+ I G L+ GL +L+SLN++ C ++D + L+G+T L+
Sbjct: 137 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLE 196
Query: 184 SLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-Q 239
L + C K+TD + ++ +GL L LLNL C ++ A L LS +GSL LNL C
Sbjct: 197 QLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDN 256
Query: 240 LSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGL-- 293
+SD G + +GSL++ L++ F +++ D+ L ++ +GL L+SL+L SC I D+G+
Sbjct: 257 ISDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINR 315
Query: 294 --VNLTGLCNL---KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 348
+ GL L +C+ ++D + HLS LT ++ T I+ L ++ L
Sbjct: 316 MVRQMHGLRTLNIGQCVRITDKGLELIA-EHLSQLTGIDLYGC--TRITKRGLERITQLP 372
Query: 349 SLKSLNLDARQITDT 363
LK LNL Q+TD+
Sbjct: 373 CLKVLNLGLWQMTDS 387
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 95/302 (31%), Positives = 152/302 (50%), Gaps = 38/302 (12%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + G ++ + L +
Sbjct: 59 RGIRRVQILSLRRSLSYVIQGMA------NIESLNLSGCYNLTDNGLGHAFVQEIGSLRA 112
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LN+ C ITDS + ++ LK L++ CS +T++G+ + GLQ+L LNL C
Sbjct: 113 LNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSC 170
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL-K 273
LS +G + R + +GC +G ++ ++TD L H+ +
Sbjct: 171 R-------HLSDVGIGHLAGMTRS--AAEGC-----LGLEQLTLQDCQKLTDLSLKHISR 216
Query: 274 GLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLEL-SDTQVGSSGLRHLS-GLTNLESIN 330
GLT L LNL CG I D GL++L+ + +L+ L L S + +G+ HL+ G L ++
Sbjct: 217 GLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLD 276
Query: 331 LSFT-GISDGSLRKLA-GLSSLKSLNLDARQITDTGLAALT-SLTGLTHLDLFG-ARITD 386
+SF + D SL +A GL LKSL+L + I+D G+ + + GL L++ RITD
Sbjct: 277 VSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITD 336
Query: 387 SG 388
G
Sbjct: 337 KG 338
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 103/204 (50%), Gaps = 29/204 (14%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ + + L+ L+ +FC ISD GL HL + +L SL+ R + I+ G+
Sbjct: 206 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 265
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C ++ + +GL L+SL++ C+ D + + + L++
Sbjct: 266 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 325
Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
L I C ++TD G+ + + L +LT ++L GC +++
Sbjct: 326 LNIGQCVRITDKGLELIAEHLSQLTGIDLYGCT-----------------------RITK 362
Query: 243 DGCEKFSKIGSLKVLNLGFNEITD 266
G E+ +++ LKVLNLG ++TD
Sbjct: 363 RGLERITQLPCLKVLNLGLWQMTD 386
>gi|115495249|ref|NP_001069415.1| F-box/LRR-repeat protein 14 [Bos taurus]
gi|225543352|ref|NP_598701.2| F-box/LRR-repeat protein 14 [Mus musculus]
gi|404312677|ref|NP_001258205.1| F-box/LRR-repeat protein 14 [Rattus norvegicus]
gi|296211085|ref|XP_002752262.1| PREDICTED: F-box/LRR-repeat protein 14 isoform 1 [Callithrix
jacchus]
gi|332249161|ref|XP_003273733.1| PREDICTED: F-box/LRR-repeat protein 14 isoform 1 [Nomascus
leucogenys]
gi|348555895|ref|XP_003463758.1| PREDICTED: F-box/LRR-repeat protein 14-like [Cavia porcellus]
gi|395845614|ref|XP_003795522.1| PREDICTED: F-box/LRR-repeat protein 14 isoform 1 [Otolemur
garnettii]
gi|48428059|sp|Q8BID8.1|FXL14_MOUSE RecName: Full=F-box/LRR-repeat protein 14; AltName: Full=F-box and
leucine-rich repeat protein 14
gi|122144674|sp|Q17R01.1|FXL14_BOVIN RecName: Full=F-box/LRR-repeat protein 14; AltName: Full=F-box and
leucine-rich repeat protein 14
gi|26351129|dbj|BAC39201.1| unnamed protein product [Mus musculus]
gi|74196388|dbj|BAE33081.1| unnamed protein product [Mus musculus]
gi|109659305|gb|AAI18094.1| F-box and leucine-rich repeat protein 14 [Bos taurus]
gi|119609336|gb|EAW88930.1| F-box and leucine-rich repeat protein 14, isoform CRA_c [Homo
sapiens]
gi|148667199|gb|EDK99615.1| F-box and leucine-rich repeat protein 14 [Mus musculus]
gi|149049602|gb|EDM02056.1| rCG29594 [Rattus norvegicus]
gi|296487055|tpg|DAA29168.1| TPA: F-box/LRR-repeat protein 14 [Bos taurus]
Length = 400
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 99/315 (31%), Positives = 169/315 (53%), Gaps = 32/315 (10%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
++ +N++SL+ + C ++D GL H ++ + +L +L+ IT + A + L
Sbjct: 86 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 145
Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LK 183
L+L C+ I G L+ GL +L+SLN++ C ++D + L+G+T L+
Sbjct: 146 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLE 205
Query: 184 SLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-Q 239
L + C K+TD + ++ +GL L LLNL C ++ A L LS +GSL LNL C
Sbjct: 206 QLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDN 265
Query: 240 LSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGL-- 293
+SD G + +GSL++ L++ F +++ D+ L ++ +GL L+SL+L SC I D+G+
Sbjct: 266 ISDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINR 324
Query: 294 --VNLTGLCNL---KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 348
+ GL L +C+ ++D + HLS LT ++ T I+ L ++ L
Sbjct: 325 MVRQMHGLRTLNIGQCVRITDKGLELIA-EHLSQLTGIDLYGC--TRITKRGLERITQLP 381
Query: 349 SLKSLNLDARQITDT 363
LK LNL Q+TD+
Sbjct: 382 CLKVLNLGLWQMTDS 396
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 95/302 (31%), Positives = 152/302 (50%), Gaps = 38/302 (12%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + G ++ + L +
Sbjct: 68 RGIRRVQILSLRRSLSYVIQGMA------NIESLNLSGCYNLTDNGLGHAFVQEIGSLRA 121
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LN+ C ITDS + ++ LK L++ CS +T++G+ + GLQ+L LNL C
Sbjct: 122 LNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSC 179
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL-K 273
LS +G + R + +GC +G ++ ++TD L H+ +
Sbjct: 180 R-------HLSDVGIGHLAGMTRS--AAEGC-----LGLEQLTLQDCQKLTDLSLKHISR 225
Query: 274 GLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLEL-SDTQVGSSGLRHLS-GLTNLESIN 330
GLT L LNL CG I D GL++L+ + +L+ L L S + +G+ HL+ G L ++
Sbjct: 226 GLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLD 285
Query: 331 LSFT-GISDGSLRKLA-GLSSLKSLNLDARQITDTGLAALT-SLTGLTHLDLFG-ARITD 386
+SF + D SL +A GL LKSL+L + I+D G+ + + GL L++ RITD
Sbjct: 286 VSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITD 345
Query: 387 SG 388
G
Sbjct: 346 KG 347
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 103/204 (50%), Gaps = 29/204 (14%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ + + L+ L+ +FC ISD GL HL + +L SL+ R + I+ G+
Sbjct: 215 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 274
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C ++ + +GL L+SL++ C+ D + + + L++
Sbjct: 275 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 334
Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
L I C ++TD G+ + + L +LT ++L GC +++
Sbjct: 335 LNIGQCVRITDKGLELIAEHLSQLTGIDLYGCT-----------------------RITK 371
Query: 243 DGCEKFSKIGSLKVLNLGFNEITD 266
G E+ +++ LKVLNLG ++TD
Sbjct: 372 RGLERITQLPCLKVLNLGLWQMTD 395
>gi|344278047|ref|XP_003410808.1| PREDICTED: F-box/LRR-repeat protein 14 [Loxodonta africana]
Length = 514
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 101/319 (31%), Positives = 170/319 (53%), Gaps = 40/319 (12%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
++ +N++SL+ + C ++D GL H ++ + +L +L+ IT + A + L
Sbjct: 86 IQGMANIESLNLSGCYHLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 145
Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LK 183
L+L C+ I G L+ GL +L+SLN++ C ++D + L+G+T L+
Sbjct: 146 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLE 205
Query: 184 SLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-Q 239
L + C K+TD + ++ +GL L LLNL C ++ A L LS +GSL LNL C
Sbjct: 206 QLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDN 265
Query: 240 LSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGL-- 293
+SD G + +GSL++ L++ F +++ D+ L ++ +GL L+SL+L SC I D+G+
Sbjct: 266 ISDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINR 324
Query: 294 --VNLTGLCNL---KCLELSDTQVGSSGL----RHLSGLTNLESINLSFTGISDGSLRKL 344
+ GL L +C+ ++D GL HLS LT ++ T I+ L ++
Sbjct: 325 MVRQMHGLRTLNIGQCVRITD-----KGLELIAEHLSQLTGIDLYGC--TRITKRGLERI 377
Query: 345 AGLSSLKSLNLDARQITDT 363
L LK LNL Q+TD+
Sbjct: 378 TQLPCLKVLNLGLWQMTDS 396
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 95/302 (31%), Positives = 152/302 (50%), Gaps = 38/302 (12%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + G ++ + L +
Sbjct: 68 RGIRRVQILSLRRSLSYVIQGMA------NIESLNLSGCYHLTDNGLGHAFVQEIGSLRA 121
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LN+ C ITDS + ++ LK L++ CS +T++G+ + GLQ+L LNL C
Sbjct: 122 LNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSC 179
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL-K 273
LS +G + R + +GC +G ++ ++TD L H+ +
Sbjct: 180 -------RHLSDVGIGHLAGMTRS--AAEGC-----LGLEQLTLQDCQKLTDLSLKHISR 225
Query: 274 GLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLEL-SDTQVGSSGLRHLS-GLTNLESIN 330
GLT L LNL CG I D GL++L+ + +L+ L L S + +G+ HL+ G L ++
Sbjct: 226 GLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLD 285
Query: 331 LSF-TGISDGSLRKLA-GLSSLKSLNLDARQITDTGLAALT-SLTGLTHLDLFG-ARITD 386
+SF + D SL +A GL LKSL+L + I+D G+ + + GL L++ RITD
Sbjct: 286 VSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITD 345
Query: 387 SG 388
G
Sbjct: 346 KG 347
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 105/206 (50%), Gaps = 33/206 (16%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ + + L+ L+ +FC ISD GL HL + +L SL+ R + I+ G+
Sbjct: 215 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 274
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL----KGLMKLESLNIKWCNCITDSDMKPLSGLTNL 182
A G + L LD+ C ++ G +L +GL L+SL++ C+ D + + + L
Sbjct: 275 AMGSLRLSGLDVSFCDKV--GDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGL 332
Query: 183 KSLQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
++L I C ++TD G+ + + L +LT ++L GC ++
Sbjct: 333 RTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGC-----------------------TRI 369
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITD 266
+ G E+ +++ LKVLNLG ++TD
Sbjct: 370 TKRGLERITQLPCLKVLNLGLWQMTD 395
>gi|290974964|ref|XP_002670214.1| predicted protein [Naegleria gruberi]
gi|284083770|gb|EFC37470.1| predicted protein [Naegleria gruberi]
Length = 383
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 120/239 (50%), Gaps = 1/239 (0%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
+ +L+SL+I N I D K +S + L SL I +++ G+ ++ ++ LT L++ G
Sbjct: 126 MKQLKSLDISE-NRIGDEGAKFISEMKQLTSLDIGYNRIGVVGVKFINEMKHLTSLDISG 184
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
+ + S+S L L L+ N ++ D G + S++ L +L++ N I E +
Sbjct: 185 NGIGDEGVKSISELKQLTSLDFNNNRIGDKGAKSISEMKHLTLLSINNNHIGAEGARFIS 244
Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333
+ L+SL++ + IGDEG + + L L++S ++G G+ +S + L S+ +
Sbjct: 245 EMKQLKSLSIYNNQIGDEGAKFINEMKQLTSLDISGNEIGVEGVIPISEMKQLTSLEIGG 304
Query: 334 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
I D + ++ + L SLN+ QI G ++ + L L + G +I D G ++
Sbjct: 305 NQIGDEGAKLISEMKQLISLNIYNNQIGIEGAKFISEMKQLKSLYIGGNQIGDEGVKFI 363
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 116/226 (51%), Gaps = 1/226 (0%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
+ +L SL+I + N I +K ++ + +L SL IS + + D G+ + L++LT L+
Sbjct: 150 MKQLTSLDIGY-NRIGVVGVKFINEMKHLTSLDISGNGIGDEGVKSISELKQLTSLDFNN 208
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
+ S+S + L L++N + +G S++ LK L++ N+I DE +
Sbjct: 209 NRIGDKGAKSISEMKHLTLLSINNNHIGAEGARFISEMKQLKSLSIYNNQIGDEGAKFIN 268
Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333
+ L SL++ IG EG++ ++ + L LE+ Q+G G + +S + L S+N+
Sbjct: 269 EMKQLTSLDISGNEIGVEGVIPISEMKQLTSLEIGGNQIGDEGAKLISEMKQLISLNIYN 328
Query: 334 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
I + ++ + LKSL + QI D G+ ++ + LT LD+
Sbjct: 329 NQIGIEGAKFISEMKQLKSLYIGGNQIGDEGVKFISEMKQLTSLDI 374
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/234 (23%), Positives = 121/234 (51%), Gaps = 1/234 (0%)
Query: 160 LNIKWCNCITDS-DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
+N+K+ + DS +K ++ + LKSL IS +++ D G ++ +++LT L++ +
Sbjct: 106 VNLKFSRRLLDSIQVKFITEMKQLKSLDISENRIGDEGAKFISEMKQLTSLDIGYNRIGV 165
Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 278
+ ++ + L L+++ + D+G + S++ L L+ N I D+ + + +L
Sbjct: 166 VGVKFINEMKHLTSLDISGNGIGDEGVKSISELKQLTSLDFNNNRIGDKGAKSISEMKHL 225
Query: 279 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
L++++ IG EG ++ + LK L + + Q+G G + ++ + L S+++S I
Sbjct: 226 TLLSINNNHIGAEGARFISEMKQLKSLSIYNNQIGDEGAKFINEMKQLTSLDISGNEIGV 285
Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
+ ++ + L SL + QI D G ++ + L L+++ +I GA ++
Sbjct: 286 EGVIPISEMKQLTSLEIGGNQIGDEGAKLISEMKQLISLNIYNNQIGIEGAKFI 339
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 68/248 (27%), Positives = 125/248 (50%), Gaps = 7/248 (2%)
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGL--MK-LESLNIKWCNCITDSDM 173
N I +G K + + L LD+ RI G+V +K + MK L SL+I N I D +
Sbjct: 137 NRIGDEGAKFISEMKQLTSLDI-GYNRI--GVVGVKFINEMKHLTSLDIS-GNGIGDEGV 192
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
K +S L L SL + +++ D G + ++ LTLL++ + A +S + L L
Sbjct: 193 KSISELKQLTSLDFNNNRIGDKGAKSISEMKHLTLLSINNNHIGAEGARFISEMKQLKSL 252
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
++ Q+ D+G + +++ L L++ NEI E ++ + + L SL + IGDEG
Sbjct: 253 SIYNNQIGDEGAKFINEMKQLTSLDISGNEIGVEGVIPISEMKQLTSLEIGGNQIGDEGA 312
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
++ + L L + + Q+G G + +S + L+S+ + I D ++ ++ + L SL
Sbjct: 313 KLISEMKQLISLNIYNNQIGIEGAKFISEMKQLKSLYIGGNQIGDEGVKFISEMKQLTSL 372
Query: 354 NLDARQIT 361
++ +I
Sbjct: 373 DIGYNEIV 380
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 80/318 (25%), Positives = 150/318 (47%), Gaps = 15/318 (4%)
Query: 6 ISQQIFNELVYSRCLTEVSLEAFRDCALQDLCL-GQYPG--VNDKW----MDVIA----S 54
IS+Q FN + L + F + + +LC+ Q+ VN K+ +D I +
Sbjct: 66 ISKQFFNVIKERSKLVIKFKQKFTETRI-ELCMKSQFMNSIVNLKFSRRLLDSIQVKFIT 124
Query: 55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
+ L S+D+S + + D G + + L SLD + +I G++ + + +LTSL
Sbjct: 125 EMKQLKSLDISENRIGDEGAKFISEMKQLTSLDIGYN-RIGVVGVKFINEMKHLTSLDI- 182
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
N I +G+K+ + L L LD G ++ + L L+I N I +
Sbjct: 183 SGNGIGDEGVKSISELKQLTSLDFNNNRIGDKGAKSISEMKHLTLLSIN-NNHIGAEGAR 241
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
+S + LKSL I +++ D G ++ +++LT L++ G + + +S + L L
Sbjct: 242 FISEMKQLKSLSIYNNQIGDEGAKFINEMKQLTSLDISGNEIGVEGVIPISEMKQLTSLE 301
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
+ Q+ D+G + S++ L LN+ N+I E + + L+SL + IGDEG+
Sbjct: 302 IGGNQIGDEGAKLISEMKQLISLNIYNNQIGIEGAKFISEMKQLKSLYIGGNQIGDEGVK 361
Query: 295 NLTGLCNLKCLELSDTQV 312
++ + L L++ ++
Sbjct: 362 FISEMKQLTSLDIGYNEI 379
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 103/207 (49%), Gaps = 3/207 (1%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L S+D+SG+ + D G+ + + L SLDFN +I D G + + + +LT LS NN
Sbjct: 177 LTSLDISGNGIGDEGVKSISELKQLTSLDFNNN-RIGDKGAKSISEMKHLTLLSIN-NNH 234
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
I A+G + + + L L + G + + +L SL+I N I + P+S
Sbjct: 235 IGAEGARFISEMKQLKSLSIYNNQIGDEGAKFINEMKQLTSLDIS-GNEIGVEGVIPISE 293
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
+ L SL+I +++ D G + +++L LN+ + +S + L L +
Sbjct: 294 MKQLTSLEIGGNQIGDEGAKLISEMKQLISLNIYNNQIGIEGAKFISEMKQLKSLYIGGN 353
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEIT 265
Q+ D+G + S++ L L++G+NEI
Sbjct: 354 QIGDEGVKFISEMKQLTSLDIGYNEIV 380
>gi|291230586|ref|XP_002735244.1| PREDICTED: partner of paired-like [Saccoglossus kowalevskii]
Length = 396
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 102/298 (34%), Positives = 155/298 (52%), Gaps = 24/298 (8%)
Query: 82 NLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAG-LINLVKLDL 138
NLQSL+ + C ++D GL H +R + +LT L+ IT + A L NL LDL
Sbjct: 93 NLQSLNLSGCYNLTDVGLAHAFVREMPSLTVLNLSLCKQITDSSLGRIAQYLRNLEHLDL 152
Query: 139 ERCTRI--HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LKSLQIS 188
C I G L+ GL KL LN++ C ++DS + L+GLT L+ L +
Sbjct: 153 GGCCNITNTGLLLIAWGLTKLRYLNLRSCRHVSDSGIAHLAGLTKNDAGGTLFLQHLVLQ 212
Query: 189 -CSKVTDSGIA-YLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDDG 244
C K+TD + +GL KL LNL C +T + + LS + SL LNL C +SD G
Sbjct: 213 DCQKLTDLALLNAARGLVKLESLNLSFCGGITDSGMVHLSRMPSLKELNLRSCDNISDIG 272
Query: 245 CEKFSKIGS-LKVLNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGLVNLT-GLC 300
++ G+ L+ L++ F +++ D L H+ +G+ +L S++L SC I D+G+ L L
Sbjct: 273 IAHLAEGGAYLRTLDVSFCDKVGDASLTHIAQGMYSLMSISLSSCPITDDGMARLVRTLR 332
Query: 301 NLKCLELSD-TQVGSSGLRHL-SGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNL 355
+LK L + +++ GL + + L L I+L T I+ L K+ L L LNL
Sbjct: 333 DLKTLNIGQCSRITDEGLGLIATNLRKLSCIDLYGCTKITTVGLEKIMQLPCLSVLNL 390
Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 92/277 (33%), Positives = 145/277 (52%), Gaps = 34/277 (12%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGS-DVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEH 101
+ D + IA +L +DL G ++T++GL+ + + L+ L+ C +SD G+ H
Sbjct: 132 ITDSSLGRIAQYLRNLEHLDLGGCCNITNTGLLLIAWGLTKLRYLNLRSCRHVSDSGIAH 191
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNL-KGLMKLES 159
L GL+ +N+A G + L L L+ C ++ L+N +GL+KLES
Sbjct: 192 LAGLT--------KNDA---------GGTLFLQHLVLQDCQKLTDLALLNAARGLVKLES 234
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGC-PV 216
LN+ +C ITDS M LS + +LK L + SC ++D GIA+L +G L L++ C V
Sbjct: 235 LNLSFCGGITDSGMVHLSRMPSLKELNLRSCDNISDIGIAHLAEGGAYLRTLDVSFCDKV 294
Query: 217 TAACLDSLS-ALGSLFYLNLNRCQLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK 273
A L ++ + SL ++L+ C ++DDG + + + LK LN+G + ITDE L
Sbjct: 295 GDASLTHIAQGMYSLMSISLSSCPITDDGMARLVRTLRDLKTLNIGQCSRITDEGL---- 350
Query: 274 GL--TNLESLN-LDSCGIGDEGLVNLTGLCNLKCLEL 307
GL TNL L+ +D G V L + L CL +
Sbjct: 351 GLIATNLRKLSCIDLYGCTKITTVGLEKIMQLPCLSV 387
>gi|281349609|gb|EFB25193.1| hypothetical protein PANDA_001999 [Ailuropoda melanoleuca]
Length = 398
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 99/315 (31%), Positives = 169/315 (53%), Gaps = 32/315 (10%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
++ +N++SL+ + C ++D GL H ++ + +L +L+ IT + A + L
Sbjct: 86 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 145
Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LK 183
L+L C+ I G L+ GL +L+SLN++ C ++D + L+G+T L+
Sbjct: 146 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLE 205
Query: 184 SLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-Q 239
L + C K+TD + ++ +GL L LLNL C ++ A L LS +GSL LNL C
Sbjct: 206 QLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDN 265
Query: 240 LSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGL-- 293
+SD G + +GSL++ L++ F +++ D+ L ++ +GL L+SL+L SC I D+G+
Sbjct: 266 ISDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINR 324
Query: 294 --VNLTGLCNL---KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 348
+ GL L +C+ ++D + HLS LT ++ T I+ L ++ L
Sbjct: 325 MVRQMHGLRTLNIGQCVRITDKGLELIA-EHLSQLTGIDLYGC--TRITKRGLERITQLP 381
Query: 349 SLKSLNLDARQITDT 363
LK LNL Q+TD+
Sbjct: 382 CLKVLNLGLWQMTDS 396
Score = 74.3 bits (181), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 95/302 (31%), Positives = 152/302 (50%), Gaps = 38/302 (12%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + G ++ + L +
Sbjct: 68 RGIRRVQILSLRRSLSYVIQGMA------NIESLNLSGCYNLTDNGLGHAFVQEIGSLRA 121
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LN+ C ITDS + ++ LK L++ CS +T++G+ + GLQ+L LNL C
Sbjct: 122 LNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSC 179
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL-K 273
LS +G + R + +GC +G ++ ++TD L H+ +
Sbjct: 180 R-------HLSDVGIGHLAGMTRS--AAEGC-----LGLEQLTLQDCQKLTDLSLKHISR 225
Query: 274 GLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLEL-SDTQVGSSGLRHLS-GLTNLESIN 330
GLT L LNL CG I D GL++L+ + +L+ L L S + +G+ HL+ G L ++
Sbjct: 226 GLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLD 285
Query: 331 LSF-TGISDGSLRKLA-GLSSLKSLNLDARQITDTGLAALT-SLTGLTHLDLFG-ARITD 386
+SF + D SL +A GL LKSL+L + I+D G+ + + GL L++ RITD
Sbjct: 286 VSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITD 345
Query: 387 SG 388
G
Sbjct: 346 KG 347
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 103/204 (50%), Gaps = 29/204 (14%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ + + L+ L+ +FC ISD GL HL + +L SL+ R + I+ G+
Sbjct: 215 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 274
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C ++ + +GL L+SL++ C+ D + + + L++
Sbjct: 275 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 334
Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
L I C ++TD G+ + + L +LT ++L GC +++
Sbjct: 335 LNIGQCVRITDKGLELIAEHLSQLTGIDLYGCT-----------------------RITK 371
Query: 243 DGCEKFSKIGSLKVLNLGFNEITD 266
G E+ +++ LKVLNLG ++TD
Sbjct: 372 RGLERITQLPCLKVLNLGLWQMTD 395
>gi|22748931|ref|NP_689654.1| F-box/LRR-repeat protein 14 [Homo sapiens]
gi|386782025|ref|NP_001247451.1| F-box/LRR-repeat protein 14 [Macaca mulatta]
gi|390467358|ref|XP_003733751.1| PREDICTED: F-box/LRR-repeat protein 14 isoform 2 [Callithrix
jacchus]
gi|402884767|ref|XP_003905846.1| PREDICTED: F-box/LRR-repeat protein 14 [Papio anubis]
gi|441670511|ref|XP_004092204.1| PREDICTED: F-box/LRR-repeat protein 14 [Nomascus leucogenys]
gi|48428083|sp|Q8N1E6.1|FXL14_HUMAN RecName: Full=F-box/LRR-repeat protein 14; AltName: Full=F-box and
leucine-rich repeat protein 14
gi|20381419|gb|AAH28132.1| F-box and leucine-rich repeat protein 14 [Homo sapiens]
gi|119609334|gb|EAW88928.1| F-box and leucine-rich repeat protein 14, isoform CRA_a [Homo
sapiens]
gi|312150528|gb|ADQ31776.1| F-box and leucine-rich repeat protein 14 [synthetic construct]
gi|355563880|gb|EHH20380.1| F-box and leucine-rich repeat protein 14 [Macaca mulatta]
gi|384945426|gb|AFI36318.1| F-box/LRR-repeat protein 14 [Macaca mulatta]
gi|410217776|gb|JAA06107.1| F-box and leucine-rich repeat protein 14 [Pan troglodytes]
Length = 418
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 99/315 (31%), Positives = 169/315 (53%), Gaps = 32/315 (10%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
++ +N++SL+ + C ++D GL H ++ + +L +L+ IT + A + L
Sbjct: 86 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 145
Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LK 183
L+L C+ I G L+ GL +L+SLN++ C ++D + L+G+T L+
Sbjct: 146 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLE 205
Query: 184 SLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-Q 239
L + C K+TD + ++ +GL L LLNL C ++ A L LS +GSL LNL C
Sbjct: 206 QLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDN 265
Query: 240 LSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGL-- 293
+SD G + +GSL++ L++ F +++ D+ L ++ +GL L+SL+L SC I D+G+
Sbjct: 266 ISDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINR 324
Query: 294 --VNLTGLCNL---KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 348
+ GL L +C+ ++D + HLS LT ++ T I+ L ++ L
Sbjct: 325 MVRQMHGLRTLNIGQCVRITDKGLELIA-EHLSQLTGIDLYGC--TRITKRGLERITQLP 381
Query: 349 SLKSLNLDARQITDT 363
LK LNL Q+TD+
Sbjct: 382 CLKVLNLGLWQMTDS 396
Score = 74.3 bits (181), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 95/302 (31%), Positives = 152/302 (50%), Gaps = 38/302 (12%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + G ++ + L +
Sbjct: 68 RGIRRVQILSLRRSLSYVIQGMA------NIESLNLSGCYNLTDNGLGHAFVQEIGSLRA 121
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LN+ C ITDS + ++ LK L++ CS +T++G+ + GLQ+L LNL C
Sbjct: 122 LNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSC 179
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL-K 273
LS +G + R + +GC +G ++ ++TD L H+ +
Sbjct: 180 R-------HLSDVGIGHLAGMTRS--AAEGC-----LGLEQLTLQDCQKLTDLSLKHISR 225
Query: 274 GLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLEL-SDTQVGSSGLRHLS-GLTNLESIN 330
GLT L LNL CG I D GL++L+ + +L+ L L S + +G+ HL+ G L ++
Sbjct: 226 GLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLD 285
Query: 331 LSF-TGISDGSLRKLA-GLSSLKSLNLDARQITDTGLAALT-SLTGLTHLDLFG-ARITD 386
+SF + D SL +A GL LKSL+L + I+D G+ + + GL L++ RITD
Sbjct: 286 VSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITD 345
Query: 387 SG 388
G
Sbjct: 346 KG 347
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 103/204 (50%), Gaps = 29/204 (14%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ + + L+ L+ +FC ISD GL HL + +L SL+ R + I+ G+
Sbjct: 215 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 274
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C ++ + +GL L+SL++ C+ D + + + L++
Sbjct: 275 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 334
Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
L I C ++TD G+ + + L +LT ++L GC +++
Sbjct: 335 LNIGQCVRITDKGLELIAEHLSQLTGIDLYGCT-----------------------RITK 371
Query: 243 DGCEKFSKIGSLKVLNLGFNEITD 266
G E+ +++ LKVLNLG ++TD
Sbjct: 372 RGLERITQLPCLKVLNLGLWQMTD 395
>gi|222630606|gb|EEE62738.1| hypothetical protein OsJ_17541 [Oryza sativa Japonica Group]
Length = 973
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 100/358 (27%), Positives = 160/358 (44%), Gaps = 42/358 (11%)
Query: 39 GQYPGVNDKWMDVIASQGS------SLLSVDLSGSDVTDSG------------LIHLKDC 80
+Y V +W+ + S S+ +DLSG D+ ++ L DC
Sbjct: 588 ARYGYVPPRWLPALRPGRSLRVFQHSVEEIDLSGHIAVDAEWLAYLGAFRYLRVLKLADC 647
Query: 81 SN--------------LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
N L+ LD + C +ISD G++H+ + +L L + +T G+ A
Sbjct: 648 KNVNSSAVWALSGMRTLKELDLSRCSKISDAGIKHIASIESLEKLHVSQ-TGLTDNGVMA 706
Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
+ LINL LDL L +L+ L +LE L+I W + IT+ L T+L L
Sbjct: 707 ISSLINLRLLDLGGVRFTDKALRSLQVLTQLEHLDI-WGSEITNEGASVLIAFTSLSFLN 765
Query: 187 ISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE 246
IS ++VT L L L LN+ C + + C L L L ++ + E
Sbjct: 766 ISWTRVT-----CLPILPTLRCLNMSNCTIHSICNGEFQVLIHLEKLIISAASFGNID-E 819
Query: 247 KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL-CNLKCL 305
FS I + L + + L L + NLE L+L I + + + + NLK L
Sbjct: 820 VFSSILPSSLTYLDMSSCSSSNLYFLGNMRNLEHLDLSYSRIISDAIEYIANIGMNLKFL 879
Query: 306 ELSDTQVGSSGLRHLSG-LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
LS+++V S L L+G + +L +++L+ T I D +L ++ + SL+ LNL I D
Sbjct: 880 SLSNSEVTSQALCVLAGTVPSLTTLSLAHTKIDDSALLYISMMPSLRILNLSRTCIKD 937
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 78/299 (26%), Positives = 141/299 (47%), Gaps = 27/299 (9%)
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLV-NLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ A+ + L L L C ++ V L G+ L+ L++ C+ I+D+ +K +
Sbjct: 624 AVDAEWLAYLGAFRYLRVLKLADCKNVNSSAVWALSGMRTLKELDLSRCSKISDAGIKHI 683
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ + +L+ L +S + +TD+G+ + L L LL+L G T L SL L L +L++
Sbjct: 684 ASIESLEKLHVSQTGLTDNGVMAISSLINLRLLDLGGVRFTDKALRSLQVLTQLEHLDIW 743
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEIT-------------DECLVH------LKGLTN 277
+++++G SL LN+ + +T C +H + L +
Sbjct: 744 GSEITNEGASVLIAFTSLSFLNISWTRVTCLPILPTLRCLNMSNCTIHSICNGEFQVLIH 803
Query: 278 LESLNLDSCGIG--DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 335
LE L + + G DE ++ +L L++S SS L L + NLE ++LS++
Sbjct: 804 LEKLIISAASFGNIDEVFSSILP-SSLTYLDMSSCS--SSNLYFLGNMRNLEHLDLSYSR 860
Query: 336 ISDGSLRKLAGLS-SLKSLNLDARQITDTGLAALT-SLTGLTHLDLFGARITDSGAAYL 392
I ++ +A + +LK L+L ++T L L ++ LT L L +I DS Y+
Sbjct: 861 IISDAIEYIANIGMNLKFLSLSNSEVTSQALCVLAGTVPSLTTLSLAHTKIDDSALLYI 919
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 78/135 (57%), Gaps = 2/135 (1%)
Query: 260 GFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGL 317
G + E L +L L L L C + + L+G+ LK L+LS +++ +G+
Sbjct: 621 GHIAVDAEWLAYLGAFRYLRVLKLADCKNVNSSAVWALSGMRTLKELDLSRCSKISDAGI 680
Query: 318 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 377
+H++ + +LE +++S TG++D + ++ L +L+ L+L + TD L +L LT L HL
Sbjct: 681 KHIASIESLEKLHVSQTGLTDNGVMAISSLINLRLLDLGGVRFTDKALRSLQVLTQLEHL 740
Query: 378 DLFGARITDSGAAYL 392
D++G+ IT+ GA+ L
Sbjct: 741 DIWGSEITNEGASVL 755
>gi|422811192|ref|ZP_16859602.1| internalin P4 [Listeria monocytogenes FSL J1-208]
gi|378750825|gb|EHY61417.1| internalin P4 [Listeria monocytogenes FSL J1-208]
Length = 776
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 97/325 (29%), Positives = 154/325 (47%), Gaps = 63/325 (19%)
Query: 100 EHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 159
+ L + N+++ S +N + +G++ L NL +L LE L L GL+KLE
Sbjct: 72 DELNSVENISADSGLYDNVASIEGVQY---LNNLTELRLENVDNSVSDLRPLSGLIKLEV 128
Query: 160 LNIKWCNCITD--------------------SDMKPLSGLTNLKSLQISCSKVTD-SGIA 198
++ + + I+D SD+ PL+ TNL +L +S +K++D S ++
Sbjct: 129 ISF-YHSQISDLSPLSELINLTSLTLNDNQISDISPLANSTNLTTLNMSSNKISDLSPLS 187
Query: 199 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 258
L L KL + + L LS L +L L +N ++SD + + +L LN
Sbjct: 188 NLSNLNKLDFRENQ-----ISDLSPLSGLINLTSLTINANKISD--ISPLANLTNLTTLN 240
Query: 259 LGFNEITDEC--------------------LVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
+G N+ITD + L LTNL SL++D I D L +L+
Sbjct: 241 MGINQITDLSSLSGLISLVDLHLSVNQITDISALSDLTNLRSLDIDHNQIID--LSSLSN 298
Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
L NLK L L D Q+ S + LSGL NL + + + D S L+ L++L+ L +D+
Sbjct: 299 LTNLKRLHLVDNQI--SSITPLSGLINLTDLEIRINQVKDVS--PLSSLANLEMLYVDSN 354
Query: 359 QITDTGLAALTSLTGLTHLDLFGAR 383
QI+D ++SL L +L LF A
Sbjct: 355 QISD-----ISSLKNLKNLVLFSAH 374
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 71/226 (31%), Positives = 116/226 (51%), Gaps = 23/226 (10%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
+ ++L ++++S + ++D L L + SNL LDF QISD L L GL NLTSL+
Sbjct: 165 ANSTNLTTLNMSSNKISD--LSPLSNLSNLNKLDFREN-QISD--LSPLSGLINLTSLTI 219
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
NA + A L NL L++ +I + ++ L++ N IT D+
Sbjct: 220 ---NANKISDISPLANLTNLTTLNM-GINQITDLSSLSGLISLVD-LHLS-VNQIT--DI 271
Query: 174 KPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
LS LTNL+SL I +++ D S ++ L L++L L++ + +T LS L +L
Sbjct: 272 SALSDLTNLRSLDIDHNQIIDLSSLSNLTNLKRLHLVDNQISSITP-----LSGLINLTD 326
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 278
L + Q+ D S + +L++L + N+I+D + LK L NL
Sbjct: 327 LEIRINQVKD--VSPLSSLANLEMLYVDSNQISD--ISSLKNLKNL 368
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 66/117 (56%), Gaps = 13/117 (11%)
Query: 275 LTNLESLNLDSCGIGD-----EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 329
L ++E+++ DS G+ D EG+ L L L+ LE D V S LR LSGL LE I
Sbjct: 74 LNSVENISADS-GLYDNVASIEGVQYLNNLTELR-LENVDNSV--SDLRPLSGLIKLEVI 129
Query: 330 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
+ + ISD L L+ L +L SL L+ QI+D ++ L + T LT L++ +I+D
Sbjct: 130 SFYHSQISD--LSPLSELINLTSLTLNDNQISD--ISPLANSTNLTTLNMSSNKISD 182
>gi|334117579|ref|ZP_08491670.1| Adenylate cyclase [Microcoleus vaginatus FGP-2]
gi|333460688|gb|EGK89296.1| Adenylate cyclase [Microcoleus vaginatus FGP-2]
Length = 516
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 104/291 (35%), Positives = 148/291 (50%), Gaps = 26/291 (8%)
Query: 97 GGLEHLRGLSNLTSLSFRRNNAITAQG-MKAFAGLINLVKLDLERCTRIHGGLVNLKGLM 155
G + L L+NLT L N A G +K A L NL +L+L G + L L
Sbjct: 100 GDITPLASLTNLTVLDLGFN----ALGDIKPLASLTNLTRLNL--FGNQIGDIKPLASLT 153
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215
KL L + N I D+KPL+ LTNL L +S ++V D I L L LT L+L+G
Sbjct: 154 KLTELTLN-NNKI--GDIKPLASLTNLTDLVLSSNQVGD--IKPLASLTNLTRLDLDGNV 208
Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 275
+ + L++L +L L+L+ + D + + + +L L+L N+I D + L L
Sbjct: 209 I--GDIKPLASLTNLTRLDLDGNVIGD--IKPLASLTNLSSLDLDDNQIGD--IKPLASL 262
Query: 276 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 335
TNL L+L IGD + L L NL L L D Q+G ++ L+ LTNL + LS
Sbjct: 263 TNLMGLDLRRIVIGD--IKPLASLTNLTDLSLDDNQIGD--IKPLASLTNLTRLVLSSNQ 318
Query: 336 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
I D ++ LA L++L SL+L I D + L SLT L+ LDL +I D
Sbjct: 319 IRD--IKPLASLTNLSSLDLSGNVIGD--IKPLASLTNLSSLDLNNNKIGD 365
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 120/372 (32%), Positives = 178/372 (47%), Gaps = 50/372 (13%)
Query: 35 DLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQI 94
D+ L Q G ND D + SSL + LSG+ + D + L +NL LD F
Sbjct: 68 DVLLEQA-GTND--CDAADRKLSSLTELFLSGNVIGD--ITPLASLTNLTVLDLGFN--- 119
Query: 95 SDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGL 154
+ G ++ L L+NLT L+ N +K A L L +L L + + ++K L
Sbjct: 120 ALGDIKPLASLTNLTRLNLFGNQI---GDIKPLASLTKLTELTLN-----NNKIGDIKPL 171
Query: 155 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 214
L +L + D+KPL+ LTNL L + + + D I L L LT L+L+G
Sbjct: 172 ASLTNLTDLVLSSNQVGDIKPLASLTNLTRLDLDGNVIGD--IKPLASLTNLTRLDLDGN 229
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 274
+ + L++L +L L+L+ Q+ D + + + +L L+L I D + L
Sbjct: 230 VI--GDIKPLASLTNLSSLDLDDNQIGD--IKPLASLTNLMGLDLRRIVIGD--IKPLAS 283
Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 334
LTNL L+LD IGD + L L NL L LS Q+ ++ L+ LTNL S++LS
Sbjct: 284 LTNLTDLSLDDNQIGD--IKPLASLTNLTRLVLSSNQI--RDIKPLASLTNLSSLDLSGN 339
Query: 335 GISDGSLRKLAGLSSLKSLNLDARQITDT-GLAALT-------------------SLTGL 374
I G ++ LA L++L SL+L+ +I D LA+LT SLT L
Sbjct: 340 VI--GDIKPLASLTNLSSLDLNNNKIGDIKPLASLTKLTELTLSGNVIGDIKPLASLTNL 397
Query: 375 THLDLFGARITD 386
+ L LFG I D
Sbjct: 398 SSLVLFGNVIGD 409
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 104/324 (32%), Positives = 154/324 (47%), Gaps = 45/324 (13%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L +DL G+ + D + L +NL LD + + G ++ L L+NL+SL N
Sbjct: 197 TNLTRLDLDGNVIGD--IKPLASLTNLTRLDLDGNVI---GDIKPLASLTNLSSLDLDDN 251
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+K A L NL+ LDL R + G + L L L L++ N I D+KPL
Sbjct: 252 QI---GDIKPLASLTNLMGLDLRRI--VIGDIKPLASLTNLTDLSLD-DNQI--GDIKPL 303
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LTNL L +S +++ D I L L L+ L+L G + + L++L +L L+LN
Sbjct: 304 ASLTNLTRLVLSSNQIRD--IKPLASLTNLSSLDLSGNVI--GDIKPLASLTNLSSLDLN 359
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITD----------ECLV----------HLKGLT 276
++ D + + + L L L N I D LV L LT
Sbjct: 360 NNKIGD--IKPLASLTKLTELTLSGNVIGDIKPLASLTNLSSLVLFGNVIGDIKPLASLT 417
Query: 277 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 336
NL SL LD IGD + L L NL L LS +G ++ L+ LTNL S++LS I
Sbjct: 418 NLSSLVLDGNVIGD--IKALASLTNLAGLFLSSNVIGD--IKPLASLTNLSSLDLSDNHI 473
Query: 337 SDGSLRKLAGLSSLKSLNLDARQI 360
G ++ LA L++L L+L I
Sbjct: 474 --GDIKPLASLTNLIELHLSGNPI 495
>gi|21674346|ref|NP_662411.1| Rab family protein [Chlorobium tepidum TLS]
gi|21647522|gb|AAM72753.1| Rab family protein [Chlorobium tepidum TLS]
Length = 1102
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 83/239 (34%), Positives = 126/239 (52%), Gaps = 16/239 (6%)
Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 207
+ ++ L L SL++ W SD+ PL L +L LQ+S +++TD IA L L+ LT
Sbjct: 97 ITDIAPLASLNSLSMLWLFGNKISDIAPLESLKSLTELQLSSNQITD--IAPLASLKSLT 154
Query: 208 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 267
L+L G ++ L +L SL L+L+ Q++D + + SL L+L N+I+D
Sbjct: 155 ELSLSGNNISDIA--PLESLKSLTELSLSSNQITD--IAPLASLKSLTELSLSSNQISD- 209
Query: 268 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 327
+ L+ L +L L L I D + L L +L L+LS Q+ + + L+ L +L
Sbjct: 210 -IAPLESLKSLTELQLSRNQISD--IAPLESLKSLTELQLSSNQI--TDIAPLASLKSLT 264
Query: 328 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
+ LS ISD + L L+SL L L+ QITD +A L SL LT L+L +ITD
Sbjct: 265 ELQLSRNQISD--IAPLESLNSLSKLWLNGNQITD--IAPLASLNSLTELELSSNQITD 319
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 97/197 (49%), Gaps = 16/197 (8%)
Query: 190 SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 249
+++TD I+ L L L++L L+ +T L++L SL L L ++SD
Sbjct: 73 NQITD--ISPLASLNSLSMLWLDRNQITDIA--PLASLNSLSMLWLFGNKISD--IAPLE 126
Query: 250 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 309
+ SL L L N+ITD + L L +L L+L I D + L L +L L LS
Sbjct: 127 SLKSLTELQLSSNQITD--IAPLASLKSLTELSLSGNNISD--IAPLESLKSLTELSLSS 182
Query: 310 TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 369
Q+ + + L+ L +L ++LS ISD + L L SL L L QI+D +A L
Sbjct: 183 NQI--TDIAPLASLKSLTELSLSSNQISD--IAPLESLKSLTELQLSRNQISD--IAPLE 236
Query: 370 SLTGLTHLDLFGARITD 386
SL LT L L +ITD
Sbjct: 237 SLKSLTELQLSSNQITD 253
>gi|406831652|ref|ZP_11091246.1| hypothetical protein SpalD1_08439 [Schlesneria paludicola DSM
18645]
Length = 267
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 87/154 (56%)
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 274
P+ A L + L L L L Q++D EK + +L L LG+++++D + HLKG
Sbjct: 92 PLPAELLSEIGTLKELKTLWLLGPQVTDVAVEKLVGMKNLTGLYLGYSQLSDRGIEHLKG 151
Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 334
L+ LE + L +GD+ L GL NLK + L+DT V +G++ L L +L+ + L+ T
Sbjct: 152 LSGLEWIFLIQTQVGDKTCDILQGLPNLKSIALNDTNVTDAGVKKLKALGDLQYLGLAGT 211
Query: 335 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 368
+SD L+ L + +LK L++ I+D G AA+
Sbjct: 212 DVSDDGLKYLIEMKALKRLDIGNTLISDEGQAAI 245
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 79/152 (51%), Gaps = 3/152 (1%)
Query: 245 CEKFSKIGSLKVLNLGF---NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN 301
E S+IG+LK L + ++TD + L G+ NL L L + D G+ +L GL
Sbjct: 95 AELLSEIGTLKELKTLWLLGPQVTDVAVEKLVGMKNLTGLYLGYSQLSDRGIEHLKGLSG 154
Query: 302 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 361
L+ + L TQVG L GL NL+SI L+ T ++D ++KL L L+ L L ++
Sbjct: 155 LEWIFLIQTQVGDKTCDILQGLPNLKSIALNDTNVTDAGVKKLKALGDLQYLGLAGTDVS 214
Query: 362 DTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
D GL L + L LD+ I+D G A +R
Sbjct: 215 DDGLKYLIEMKALKRLDIGNTLISDEGQAAIR 246
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 93/200 (46%), Gaps = 20/200 (10%)
Query: 112 SFRRNNAITAQGMKAFAGLINLV---KLDLERCTRIHGGLVN--------------LKGL 154
SF+ I A+ +++ G + + + + R HGG+ + L +
Sbjct: 43 SFQDERRIAAK-IESLGGRVEFRFTGPMWVPKSIRSHGGVTSISLTTTDRPLPAELLSEI 101
Query: 155 MKLESLNIKWC--NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
L+ L W +TD ++ L G+ NL L + S+++D GI +LKGL L + L
Sbjct: 102 GTLKELKTLWLLGPQVTDVAVEKLVGMKNLTGLYLGYSQLSDRGIEHLKGLSGLEWIFLI 161
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
V D L L +L + LN ++D G +K +G L+ L L +++D+ L +L
Sbjct: 162 QTQVGDKTCDILQGLPNLKSIALNDTNVTDAGVKKLKALGDLQYLGLAGTDVSDDGLKYL 221
Query: 273 KGLTNLESLNLDSCGIGDEG 292
+ L+ L++ + I DEG
Sbjct: 222 IEMKALKRLDIGNTLISDEG 241
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 79/152 (51%), Gaps = 6/152 (3%)
Query: 195 SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL 254
S I LK L+ L LL G VT ++ L + +L L L QLSD G E + L
Sbjct: 99 SEIGTLKELKTLWLL---GPQVTDVAVEKLVGMKNLTGLYLGYSQLSDRGIEHLKGLSGL 155
Query: 255 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 314
+ + L ++ D+ L+GL NL+S+ L+ + D G+ L L +L+ L L+ T V
Sbjct: 156 EWIFLIQTQVGDKTCDILQGLPNLKSIALNDTNVTDAGVKKLKALGDLQYLGLAGTDVSD 215
Query: 315 SGLRHLSGLTNLESINLSFTGISD---GSLRK 343
GL++L + L+ +++ T ISD ++RK
Sbjct: 216 DGLKYLIEMKALKRLDIGNTLISDEGQAAIRK 247
Score = 46.6 bits (109), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 64/138 (46%), Gaps = 3/138 (2%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
L G VTD + L NL L + Q+SD G+EHL+GLS L + F + +
Sbjct: 112 LLGPQVTDVAVEKLVGMKNLTGLYLGYS-QLSDRGIEHLKGLSGLEWI-FLIQTQVGDKT 169
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
GL NL + L G+ LK L L+ L + + ++D +K L + LK
Sbjct: 170 CDILQGLPNLKSIALNDTNVTDAGVKKLKALGDLQYLGLAGTD-VSDDGLKYLIEMKALK 228
Query: 184 SLQISCSKVTDSGIAYLK 201
L I + ++D G A ++
Sbjct: 229 RLDIGNTLISDEGQAAIR 246
Score = 41.2 bits (95), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 57/128 (44%), Gaps = 24/128 (18%)
Query: 267 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 326
E L + L L++L L + D + L G+ NL L L +Q+ G+ HL GL+ L
Sbjct: 96 ELLSEIGTLKELKTLWLLGPQVTDVAVEKLVGMKNLTGLYLGYSQLSDRGIEHLKGLSGL 155
Query: 327 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
E I L T + D + L GL +LKS+ L+ DT +TD
Sbjct: 156 EWIFLIQTQVGDKTCDILQGLPNLKSIALN-----DTN-------------------VTD 191
Query: 387 SGAAYLRS 394
+G L++
Sbjct: 192 AGVKKLKA 199
>gi|345791735|ref|XP_543882.2| PREDICTED: F-box/LRR-repeat protein 14 [Canis lupus familiaris]
Length = 420
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 99/311 (31%), Positives = 167/311 (53%), Gaps = 32/311 (10%)
Query: 81 SNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-LVKLD 137
+N++SL+ + C ++D GL H ++ + +L +L+ IT + A + L L+
Sbjct: 90 ANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGLEVLE 149
Query: 138 LERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LKSLQI 187
L C+ I G L+ GL +L+SLN++ C ++D + L+G+T L+ L +
Sbjct: 150 LGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLEQLTL 209
Query: 188 S-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDD 243
C K+TD + ++ +GL L LLNL C ++ A L LS +GSL LNL C +SD
Sbjct: 210 QDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDT 269
Query: 244 GCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGL----VN 295
G + +GSL++ L++ F +++ D+ L ++ +GL L+SL+L SC I D+G+
Sbjct: 270 GIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQ 328
Query: 296 LTGLCNL---KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
+ GL L +C+ ++D + HLS LT ++ T I+ L ++ L LK
Sbjct: 329 MHGLRTLNIGQCVRITDKGLELIA-EHLSQLTGIDLYGC--TRITKRGLERITQLPCLKV 385
Query: 353 LNLDARQITDT 363
LNL Q+TD+
Sbjct: 386 LNLGLWQMTDS 396
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 95/302 (31%), Positives = 152/302 (50%), Gaps = 38/302 (12%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + G ++ + L +
Sbjct: 68 RGIRRVQILSLRRSLSYVIQGMA------NIESLNLSGCYNLTDNGLGHAFVQEIGSLRA 121
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LN+ C ITDS + ++ LK L++ CS +T++G+ + GLQ+L LNL C
Sbjct: 122 LNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSC 179
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL-K 273
LS +G + R + +GC +G ++ ++TD L H+ +
Sbjct: 180 R-------HLSDVGIGHLAGMTRS--AAEGC-----LGLEQLTLQDCQKLTDLSLKHISR 225
Query: 274 GLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLEL-SDTQVGSSGLRHLS-GLTNLESIN 330
GLT L LNL CG I D GL++L+ + +L+ L L S + +G+ HL+ G L ++
Sbjct: 226 GLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLD 285
Query: 331 LSFT-GISDGSLRKLA-GLSSLKSLNLDARQITDTGLAALT-SLTGLTHLDLFG-ARITD 386
+SF + D SL +A GL LKSL+L + I+D G+ + + GL L++ RITD
Sbjct: 286 VSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITD 345
Query: 387 SG 388
G
Sbjct: 346 KG 347
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 103/204 (50%), Gaps = 29/204 (14%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ + + L+ L+ +FC ISD GL HL + +L SL+ R + I+ G+
Sbjct: 215 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 274
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C ++ + +GL L+SL++ C+ D + + + L++
Sbjct: 275 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 334
Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
L I C ++TD G+ + + L +LT ++L GC +++
Sbjct: 335 LNIGQCVRITDKGLELIAEHLSQLTGIDLYGCT-----------------------RITK 371
Query: 243 DGCEKFSKIGSLKVLNLGFNEITD 266
G E+ +++ LKVLNLG ++TD
Sbjct: 372 RGLERITQLPCLKVLNLGLWQMTD 395
>gi|406831323|ref|ZP_11090917.1| hypothetical protein SpalD1_06790 [Schlesneria paludicola DSM
18645]
Length = 539
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 86/346 (24%), Positives = 159/346 (45%), Gaps = 19/346 (5%)
Query: 24 SLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNL 83
+++A ++ A Q L + + + + + +++S+ G + D L S L
Sbjct: 129 TMKAVKERAKQRLPKWIHEYFDSPKLRIFSDDDGNVVSLSDYGV-LNDKALAKFSVLSTL 187
Query: 84 QSLDFNFCIQISDGGLEHLRGLSNL----TSLSFRRNNAITAQGMKAFAGLINLVKLDLE 139
+ + F Q + GL HL L+NL S S + N + +++ + + +L +L+L
Sbjct: 188 RGIQFEGAPQFTVEGLSHLSKLTNLERLSASFSSQSANELGDATLRSISEIESLRELNLS 247
Query: 140 RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS--------K 191
C GL +L+ L L L+I +TD+ + ++ L +LK L ++
Sbjct: 248 ECGVTDEGLKSLEKLPNLTHLSIYQEGRLTDAALSTIAKLKHLKVLTLTTHVGTPLGRMH 307
Query: 192 VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI 251
++S L L +L L+L G V+ L+ L L +NR Q DD + +K
Sbjct: 308 FSESATNQLIALTELEHLDLSGHDVSTDLLN----FPRLKSLRINRNQFDDDLAKAIAKC 363
Query: 252 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 311
L L++ +E+TD L HL+ L +L L++ + I D + +L NL + L +
Sbjct: 364 RELTHLDVSCSEMTDTALEHLRPLPSLTQLHIRAEEISDNAIAHLKLFPNLASVTLHTAE 423
Query: 312 VGSSGLRHLSGLTNLESINLSFT--GISDGSLRKLAGLSSLKSLNL 355
+ L +LS +L ++L++ S L +LA L +L++L L
Sbjct: 424 LTDKSLEYLSQTASLTKLDLNWATNHFSRHGLEQLANLPNLETLEL 469
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 73/266 (27%), Positives = 118/266 (44%), Gaps = 24/266 (9%)
Query: 147 GLVNLKGLMK------LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS-----KVTDS 195
G++N K L K L + + T + LS LTNL+ L S S ++ D+
Sbjct: 171 GVLNDKALAKFSVLSTLRGIQFEGAPQFTVEGLSHLSKLTNLERLSASFSSQSANELGDA 230
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL-NRCQLSDDGCEKFSKIGSL 254
+ + ++ L LNL C VT L SL L +L +L++ +L+D +K+ L
Sbjct: 231 TLRSISEIESLRELNLSECGVTDEGLKSLEKLPNLTHLSIYQEGRLTDAALSTIAKLKHL 290
Query: 255 KVLNL--------GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 306
KVL L G ++ L LT LE L+L G + +L LK L
Sbjct: 291 KVLTLTTHVGTPLGRMHFSESATNQLIALTELEHLDLS----GHDVSTDLLNFPRLKSLR 346
Query: 307 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 366
++ Q + ++ L +++S + ++D +L L L SL L++ A +I+D +A
Sbjct: 347 INRNQFDDDLAKAIAKCRELTHLDVSCSEMTDTALEHLRPLPSLTQLHIRAEEISDNAIA 406
Query: 367 ALTSLTGLTHLDLFGARITDSGAAYL 392
L L + L A +TD YL
Sbjct: 407 HLKLFPNLASVTLHTAELTDKSLEYL 432
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/243 (25%), Positives = 109/243 (44%), Gaps = 21/243 (8%)
Query: 167 CITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTA-----AC 220
+ D + S L+ L+ +Q + T G+++L L L L+ +A A
Sbjct: 172 VLNDKALAKFSVLSTLRGIQFEGAPQFTVEGLSHLSKLTNLERLSASFSSQSANELGDAT 231
Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE--ITDECLVHLKGLTNL 278
L S+S + SL LNL+ C ++D+G + K+ +L L++ + E +TD L + L +L
Sbjct: 232 LRSISEIESLRELNLSECGVTDEGLKSLEKLPNLTHLSI-YQEGRLTDAALSTIAKLKHL 290
Query: 279 ESLNLDS--------CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 330
+ L L + + L L L+ L+LS V + L L+S+
Sbjct: 291 KVLTLTTHVGTPLGRMHFSESATNQLIALTELEHLDLSGHDVSTDLL----NFPRLKSLR 346
Query: 331 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 390
++ D + +A L L++ ++TDT L L L LT L + I+D+ A
Sbjct: 347 INRNQFDDDLAKAIAKCRELTHLDVSCSEMTDTALEHLRPLPSLTQLHIRAEEISDNAIA 406
Query: 391 YLR 393
+L+
Sbjct: 407 HLK 409
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 54/107 (50%), Gaps = 4/107 (3%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L +D+S S++TD+ L HL+ +L L +ISD + HL+ NL S++
Sbjct: 366 LTHLDVSCSEMTDTALEHLRPLPSLTQLHIR-AEEISDNAIAHLKLFPNLASVTL-HTAE 423
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRI--HGGLVNLKGLMKLESLNIK 163
+T + ++ + +L KLDL T GL L L LE+L ++
Sbjct: 424 LTDKSLEYLSQTASLTKLDLNWATNHFSRHGLEQLANLPNLETLELR 470
>gi|290991310|ref|XP_002678278.1| predicted protein [Naegleria gruberi]
gi|284091890|gb|EFC45534.1| predicted protein [Naegleria gruberi]
Length = 346
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 60/245 (24%), Positives = 121/245 (49%), Gaps = 3/245 (1%)
Query: 149 VNLKGLMKLESLN-IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 207
+N + L ++ ++N +K C+CI D + L NL +L ++C K+ D G+ + +++LT
Sbjct: 71 INGQFLQRIVAVNGMKKCDCIPFLDQ--VFDLKNLTTLDVNCMKIKDEGVKIISEMKQLT 128
Query: 208 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 267
LN+ ++ + +S + L LN++R + +G S++ L LN+ N I E
Sbjct: 129 NLNVGSSGISVEGVKYISGMNQLTNLNISRNNIRAEGARYVSEMKLLTNLNIYLNGIRAE 188
Query: 268 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 327
++ + L LN+ S I D+G +L + L L ++ + G + +S + +L
Sbjct: 189 GTKYISEMKELTCLNIMSNAIHDKGAEHLRQMPKLNTLNINSNSISVEGAKFISEIQSLT 248
Query: 328 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 387
++++ F I D ++ ++ + L L I + G ++ + LT L++ +
Sbjct: 249 NLDIGFNTIGDDGVKFISKMEKLTKLYTMYINIGEKGAKHISEMEQLTSLNINSNNVGTE 308
Query: 388 GAAYL 392
GA YL
Sbjct: 309 GAKYL 313
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/272 (23%), Positives = 127/272 (46%), Gaps = 11/272 (4%)
Query: 110 SLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNC-- 167
SL+ I Q ++ + + K D C + +LK L L+ NC
Sbjct: 62 SLTHNSKKKINGQFLQRIVAVNGMKKCD---CIPFLDQVFDLKNLTTLD------VNCMK 112
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
I D +K +S + L +L + S ++ G+ Y+ G+ +LT LN+ + A +S +
Sbjct: 113 IKDEGVKIISEMKQLTNLNVGSSGISVEGVKYISGMNQLTNLNISRNNIRAEGARYVSEM 172
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
L LN+ + +G + S++ L LN+ N I D+ HL+ + L +LN++S
Sbjct: 173 KLLTNLNIYLNGIRAEGTKYISEMKELTCLNIMSNAIHDKGAEHLRQMPKLNTLNINSNS 232
Query: 288 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 347
I EG ++ + +L L++ +G G++ +S + L + + I + + ++ +
Sbjct: 233 ISVEGAKFISEIQSLTNLDIGFNTIGDDGVKFISKMEKLTKLYTMYINIGEKGAKHISEM 292
Query: 348 SSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
L SLN+++ + G L + LT++++
Sbjct: 293 EQLTSLNINSNNVGTEGAKYLCEMKHLTYMNI 324
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 112/227 (49%), Gaps = 6/227 (2%)
Query: 79 DCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL 138
D NL +LD N C++I D G++ + + LT+L+ ++ I+ +G+K +G+ L L++
Sbjct: 99 DLKNLTTLDVN-CMKIKDEGVKIISEMKQLTNLNVG-SSGISVEGVKYISGMNQLTNLNI 156
Query: 139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIA 198
R G + + L +LNI + N I K +S + L L I + + D G
Sbjct: 157 SRNNIRAEGARYVSEMKLLTNLNI-YLNGIRAEGTKYISEMKELTCLNIMSNAIHDKGAE 215
Query: 199 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 258
+L+ + KL LN+ ++ +S + SL L++ + DDG + SK+ L L
Sbjct: 216 HLRQMPKLNTLNINSNSISVEGAKFISEIQSLTNLDIGFNTIGDDGVKFISKMEKLTKLY 275
Query: 259 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 305
+ I ++ H+ + L SLN++S +G EG LC +K L
Sbjct: 276 TMYINIGEKGAKHISEMEQLTSLNINSNNVGTEG---AKYLCEMKHL 319
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 62/119 (52%)
Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 334
L NL +L+++ I DEG+ ++ + L L + + + G++++SG+ L ++N+S
Sbjct: 100 LKNLTTLDVNCMKIKDEGVKIISEMKQLTNLNVGSSGISVEGVKYISGMNQLTNLNISRN 159
Query: 335 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
I R ++ + L +LN+ I G ++ + LT L++ I D GA +LR
Sbjct: 160 NIRAEGARYVSEMKLLTNLNIYLNGIRAEGTKYISEMKELTCLNIMSNAIHDKGAEHLR 218
>gi|149175123|ref|ZP_01853746.1| hypothetical protein PM8797T_25626 [Planctomyces maris DSM 8797]
gi|148846101|gb|EDL60441.1| hypothetical protein PM8797T_25626 [Planctomyces maris DSM 8797]
Length = 1079
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 72/244 (29%), Positives = 118/244 (48%), Gaps = 5/244 (2%)
Query: 106 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN---- 161
+ + R + +G++ F + K R R+ V L+ L +LE
Sbjct: 24 EKVAPVEARTPEQLAVEGLRRFCTNLQTNKDGSARLVRLSKPHVTLEALNQLEQFPRLDY 83
Query: 162 -IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 220
C + D + + LTNL +L +S S V DSG++ LK L KL L L+ VT A
Sbjct: 84 LAMVCPHLGDEALLYIRDLTNLDTLMLSESAVGDSGLSCLKKLNKLERLYLDNTKVTDAG 143
Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 280
L LS+L L L+L ++D G + + + +L+VL L +++D L L L L+
Sbjct: 144 LQHLSSLKQLKVLSLRNLNVTDQGMQTLADLNNLEVLFLSGTQVSDAGLKSLTELKQLKI 203
Query: 281 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 340
L L I L L L +L+ L L+ T++ + LSGLT L+ + + +TG+ + S
Sbjct: 204 LYLARTAITGSQLSALNTLESLEHLSLNRTKLQPVVVDALSGLTQLKGLEIQYTGLGESS 263
Query: 341 LRKL 344
+++L
Sbjct: 264 IQQL 267
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 84/172 (48%)
Query: 208 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 267
L+ L VT L+ L L YL + L D+ + +L L L + + D
Sbjct: 59 LVRLSKPHVTLEALNQLEQFPRLDYLAMVCPHLGDEALLYIRDLTNLDTLMLSESAVGDS 118
Query: 268 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 327
L LK L LE L LD+ + D GL +L+ L LK L L + V G++ L+ L NLE
Sbjct: 119 GLSCLKKLNKLERLYLDNTKVTDAGLQHLSSLKQLKVLSLRNLNVTDQGMQTLADLNNLE 178
Query: 328 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
+ LS T +SD L+ L L LK L L IT + L+AL +L L HL L
Sbjct: 179 VLFLSGTQVSDAGLKSLTELKQLKILYLARTAITGSQLSALNTLESLEHLSL 230
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 88/160 (55%)
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
GS + L++ ++ + + + L L + + DE L++++ LTNL++L L
Sbjct: 55 GSARLVRLSKPHVTLEALNQLEQFPRLDYLAMVCPHLGDEALLYIRDLTNLDTLMLSESA 114
Query: 288 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 347
+GD GL L L L+ L L +T+V +GL+HLS L L+ ++L ++D ++ LA L
Sbjct: 115 VGDSGLSCLKKLNKLERLYLDNTKVTDAGLQHLSSLKQLKVLSLRNLNVTDQGMQTLADL 174
Query: 348 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 387
++L+ L L Q++D GL +LT L L L L IT S
Sbjct: 175 NNLEVLFLSGTQVSDAGLKSLTELKQLKILYLARTAITGS 214
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 82/156 (52%), Gaps = 6/156 (3%)
Query: 239 QLSDDGCEKF------SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
QL+ +G +F +K GS +++ L +T E L L+ L+ L + +GDE
Sbjct: 36 QLAVEGLRRFCTNLQTNKDGSARLVRLSKPHVTLEALNQLEQFPRLDYLAMVCPHLGDEA 95
Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
L+ + L NL L LS++ VG SGL L L LE + L T ++D L+ L+ L LK
Sbjct: 96 LLYIRDLTNLDTLMLSESAVGDSGLSCLKKLNKLERLYLDNTKVTDAGLQHLSSLKQLKV 155
Query: 353 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 388
L+L +TD G+ L L L L L G +++D+G
Sbjct: 156 LSLRNLNVTDQGMQTLADLNNLEVLFLSGTQVSDAG 191
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/147 (37%), Positives = 77/147 (52%), Gaps = 9/147 (6%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
LS S V DSGL LK + L+ L + +++D GL+HL L L LS R N +T QG
Sbjct: 110 LSESAVGDSGLSCLKKLNKLERLYLD-NTKVTDAGLQHLSSLKQLKVLSLRNLN-VTDQG 167
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
M+ A L NL L L GL +L L +L+ L + IT S + L+ L +L+
Sbjct: 168 MQTLADLNNLEVLFLSGTQVSDAGLKSLTELKQLKILYLA-RTAITGSQLSALNTLESLE 226
Query: 184 SLQISCSK----VTD--SGIAYLKGLQ 204
L ++ +K V D SG+ LKGL+
Sbjct: 227 HLSLNRTKLQPVVVDALSGLTQLKGLE 253
>gi|87309591|ref|ZP_01091725.1| probable G protein-coupled receptor [Blastopirellula marina DSM
3645]
gi|87287355|gb|EAQ79255.1| probable G protein-coupled receptor [Blastopirellula marina DSM
3645]
Length = 328
Score = 84.3 bits (207), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 66/223 (29%), Positives = 105/223 (47%), Gaps = 5/223 (2%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
+TD+ L L +L+ L ++ S VTD + + L +L L LE VT+A + +L++
Sbjct: 80 MTDNAASHLVMLQSLQRLNLNQSGVTDKSLEIMGALPELRSLYLERTAVTSAGVAALASC 139
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
L L L C + DD E ++ +L +L+L ITD + HL+ L +L++L L
Sbjct: 140 EKLEELMLTECAIQDDALETIGQLPALTLLSLSETPITDAGMFHLQSLPHLKTLYLRDTA 199
Query: 288 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 347
+ EG L +L+ ++LSD + S + L NLE + L T ++D L +
Sbjct: 200 VTGEGFAMLKSSTDLRLIDLSDNSINRSTIETLRSFPNLERLYLGRTSLTDELLPEFIDT 259
Query: 348 -----SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
L+ L + ITD L L L L L + R T
Sbjct: 260 LIRFNPHLRGLAIMEVPITDNSLTPLKRLAELPDLAVVDFRET 302
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 84/178 (47%)
Query: 185 LQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 244
L+ + +++TD+ ++L LQ L LNL VT L+ + AL L L L R ++ G
Sbjct: 73 LRANSARMTDNAASHLVMLQSLQRLNLNQSGVTDKSLEIMGALPELRSLYLERTAVTSAG 132
Query: 245 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 304
+ L+ L L I D+ L + L L L+L I D G+ +L L +LK
Sbjct: 133 VAALASCEKLEELMLTECAIQDDALETIGQLPALTLLSLSETPITDAGMFHLQSLPHLKT 192
Query: 305 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L DT V G L T+L I+LS I+ ++ L +L+ L L +TD
Sbjct: 193 LYLRDTAVTGEGFAMLKSSTDLRLIDLSDNSINRSTIETLRSFPNLERLYLGRTSLTD 250
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 72/148 (48%)
Query: 247 KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 306
++ G++ L +TD HL L +L+ LNL+ G+ D+ L + L L+ L
Sbjct: 63 EYDDQGAVVELRANSARMTDNAASHLVMLQSLQRLNLNQSGVTDKSLEIMGALPELRSLY 122
Query: 307 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 366
L T V S+G+ L+ LE + L+ I D +L + L +L L+L ITD G+
Sbjct: 123 LERTAVTSAGVAALASCEKLEELMLTECAIQDDALETIGQLPALTLLSLSETPITDAGMF 182
Query: 367 ALTSLTGLTHLDLFGARITDSGAAYLRS 394
L SL L L L +T G A L+S
Sbjct: 183 HLQSLPHLKTLYLRDTAVTGEGFAMLKS 210
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 77/167 (46%)
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
G++ L N +++D+ + SL+ LNL + +TD+ L + L L SL L+
Sbjct: 68 GAVVELRANSARMTDNAASHLVMLQSLQRLNLNQSGVTDKSLEIMGALPELRSLYLERTA 127
Query: 288 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 347
+ G+ L L+ L L++ + L + L L ++LS T I+D + L L
Sbjct: 128 VTSAGVAALASCEKLEELMLTECAIQDDALETIGQLPALTLLSLSETPITDAGMFHLQSL 187
Query: 348 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRS 394
LK+L L +T G A L S T L +DL I S LRS
Sbjct: 188 PHLKTLYLRDTAVTGEGFAMLKSSTDLRLIDLSDNSINRSTIETLRS 234
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 96/228 (42%), Gaps = 19/228 (8%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
+++D HL L +L L+ ++ +T + ++ L L L LER G+ L
Sbjct: 79 RMTDNAASHLVMLQSLQRLNLNQS-GVTDKSLEIMGALPELRSLYLERTAVTSAGVAALA 137
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
KLE L + C I D ++ + L L L +S + +TD+G+ +L+ L L L L
Sbjct: 138 SCEKLEELMLTEC-AIQDDALETIGQLPALTLLSLSETPITDAGMFHLQSLPHLKTLYLR 196
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL--- 269
VT L + L ++L+ ++ E +L+ L LG +TDE L
Sbjct: 197 DTAVTGEGFAMLKSSTDLRLIDLSDNSINRSTIETLRSFPNLERLYLGRTSLTDELLPEF 256
Query: 270 --------VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 309
HL+GL +E I D L L L L L + D
Sbjct: 257 IDTLIRFNPHLRGLAIME------VPITDNSLTPLKRLAELPDLAVVD 298
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 73/163 (44%)
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
L L SL LNLN+ ++D E + L+ L L +T + L LE L L
Sbjct: 88 LVMLQSLQRLNLNQSGVTDKSLEIMGALPELRSLYLERTAVTSAGVAALASCEKLEELML 147
Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
C I D+ L + L L L LS+T + +G+ HL L +L+++ L T ++
Sbjct: 148 TECAIQDDALETIGQLPALTLLSLSETPITDAGMFHLQSLPHLKTLYLRDTAVTGEGFAM 207
Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
L + L+ ++L I + + L S L L L +TD
Sbjct: 208 LKSSTDLRLIDLSDNSINRSTIETLRSFPNLERLYLGRTSLTD 250
>gi|449134939|ref|ZP_21770403.1| leucine-rich repeat domain protein [Rhodopirellula europaea 6C]
gi|448886418|gb|EMB16825.1| leucine-rich repeat domain protein [Rhodopirellula europaea 6C]
Length = 341
Score = 84.3 bits (207), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 67/228 (29%), Positives = 107/228 (46%), Gaps = 15/228 (6%)
Query: 127 FAGLINLVKLDLERCTRIHGGLVN------LKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
A L NL +L RI+G + + GL L ++ + +TD L+ L
Sbjct: 113 LAALPNLKRL------RIYGKEFDDAKAKSISGLPALIAVTFQ-DTSVTDDGASVLAELN 165
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
L+ + + S VTD + + L KLT LNL G +T + +S L L L L
Sbjct: 166 ELQDISLMNSPVTDKTLIAISTLPKLTKLNLRGTKITGEAFEPISKL-PLEDLELAETDF 224
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGL 299
+G + I L+ +NL +I +E L +G T+L +LN+D+C I +E + + L
Sbjct: 225 GPEGMPAIANIEGLEKVNLWLTKIDNESLKAFEGKTSLTALNIDNCPAITEEAIPVIVSL 284
Query: 300 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 347
+LK L L T V L L L LE++ ++ G+ +G +KL +
Sbjct: 285 PHLKLLHLGKTSVAPDALPQLKPLQELETLFVTNLGLEEGPAKKLEAM 332
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 105/226 (46%), Gaps = 2/226 (0%)
Query: 170 DSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 229
D+ +K LS + + L + + D + L L L L + G A S+S L +
Sbjct: 83 DNAVKLLSKTSTVSELFMPAAAWADGTVLRLAALPNLKRLRIYGKEFDDAKAKSISGLPA 142
Query: 230 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 289
L + ++DDG +++ L+ ++L + +TD+ L+ + L L LNL I
Sbjct: 143 LIAVTFQDTSVTDDGASVLAELNELQDISLMNSPVTDKTLIAISTLPKLTKLNLRGTKIT 202
Query: 290 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 349
E ++ L L+ LEL++T G G+ ++ + LE +NL T I + SL+ G +S
Sbjct: 203 GEAFEPISKLP-LEDLELAETDFGPEGMPAIANIEGLEKVNLWLTKIDNESLKAFEGKTS 261
Query: 350 LKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRS 394
L +LN+D IT+ + + SL L L L + L+
Sbjct: 262 LTALNIDNCPAITEEAIPVIVSLPHLKLLHLGKTSVAPDALPQLKP 307
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 64/152 (42%), Gaps = 3/152 (1%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
L + L S VTD LI + L L+ +I+ E + L L L +
Sbjct: 166 ELQDISLMNSPVTDKTLIAISTLPKLTKLNLR-GTKITGEAFEPISKLP-LEDLELAETD 223
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
+GM A A + L K++L + L +G L +LNI C IT+ + +
Sbjct: 224 -FGPEGMPAIANIEGLEKVNLWLTKIDNESLKAFEGKTSLTALNIDNCPAITEEAIPVIV 282
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL 209
L +LK L + + V + LK LQ+L L
Sbjct: 283 SLPHLKLLHLGKTSVAPDALPQLKPLQELETL 314
>gi|290994540|ref|XP_002679890.1| predicted protein [Naegleria gruberi]
gi|284093508|gb|EFC47146.1| predicted protein [Naegleria gruberi]
Length = 293
Score = 84.3 bits (207), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 76/282 (26%), Positives = 140/282 (49%), Gaps = 2/282 (0%)
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW 164
+ LTSLS N I +G K + + L LD+ G + + +L SLNI +
Sbjct: 1 MKQLTSLSIGVNE-IGVEGGKFISEIKQLTSLDISDNQIGVEGAKLISEMKQLTSLNI-F 58
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
N I K +S + L SL IS + + D G+ + +++LT L++ + +
Sbjct: 59 KNGIGVEGAKLISEMKQLTSLDISGNLIYDEGVKSISEMKQLTSLDISKNEIGVEGAKLI 118
Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284
S + L LN+++ ++SD+G + S++ L L + + I D+ +L + L SL++
Sbjct: 119 SGMKQLTSLNISKNEISDEGAKLISEMKQLTSLTIYKSGIDDKGAKYLSEIKQLTSLDIS 178
Query: 285 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 344
S +G EG ++ + L L++S+ + G +SG+ L S+N+S I D + +
Sbjct: 179 SNPMGVEGAKFISEMKQLTSLDISNNLIYDEGAEFISGMKQLTSLNISNNIILDEGAKLI 238
Query: 345 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
+ + L SL++ +I D G ++ + LT L ++ RI+D
Sbjct: 239 SEMKQLTSLDICYNEIGDEGAKFISGMKQLTSLYVYANRISD 280
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 110/219 (50%)
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
K +S + L SL I + + G + +++LT L++ G + + S+S + L L
Sbjct: 44 KLISEMKQLTSLNIFKNGIGVEGAKLISEMKQLTSLDISGNLIYDEGVKSISEMKQLTSL 103
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
++++ ++ +G + S + L LN+ NEI+DE + + L SL + GI D+G
Sbjct: 104 DISKNEIGVEGAKLISGMKQLTSLNISKNEISDEGAKLISEMKQLTSLTIYKSGIDDKGA 163
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
L+ + L L++S +G G + +S + L S+++S I D ++G+ L SL
Sbjct: 164 KYLSEIKQLTSLDISSNPMGVEGAKFISEMKQLTSLDISNNLIYDEGAEFISGMKQLTSL 223
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
N+ I D G ++ + LT LD+ I D GA ++
Sbjct: 224 NISNNIILDEGAKLISEMKQLTSLDICYNEIGDEGAKFI 262
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 104/214 (48%)
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
+ L SL I +++ G ++ +++LT L++ + +S + L LN+ +
Sbjct: 1 MKQLTSLSIGVNEIGVEGGKFISEIKQLTSLDISDNQIGVEGAKLISEMKQLTSLNIFKN 60
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
+ +G + S++ L L++ N I DE + + + L SL++ IG EG ++G
Sbjct: 61 GIGVEGAKLISEMKQLTSLDISGNLIYDEGVKSISEMKQLTSLDISKNEIGVEGAKLISG 120
Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
+ L L +S ++ G + +S + L S+ + +GI D + L+ + L SL++ +
Sbjct: 121 MKQLTSLNISKNEISDEGAKLISEMKQLTSLTIYKSGIDDKGAKYLSEIKQLTSLDISSN 180
Query: 359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
+ G ++ + LT LD+ I D GA ++
Sbjct: 181 PMGVEGAKFISEMKQLTSLDISNNLIYDEGAEFI 214
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 106/216 (49%), Gaps = 3/216 (1%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
+ + L SLD + + I D G++ + + LTSL +N I +G K +G+ L L
Sbjct: 70 ISEMKQLTSLDISGNL-IYDEGVKSISEMKQLTSLDISKNE-IGVEGAKLISGMKQLTSL 127
Query: 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG 196
++ + G + + +L SL I + + I D K LS + L SL IS + + G
Sbjct: 128 NISKNEISDEGAKLISEMKQLTSLTI-YKSGIDDKGAKYLSEIKQLTSLDISSNPMGVEG 186
Query: 197 IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 256
++ +++LT L++ + + +S + L LN++ + D+G + S++ L
Sbjct: 187 AKFISEMKQLTSLDISNNLIYDEGAEFISGMKQLTSLNISNNIILDEGAKLISEMKQLTS 246
Query: 257 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
L++ +NEI DE + G+ L SL + + I DE
Sbjct: 247 LDICYNEIGDEGAKFISGMKQLTSLYVYANRISDEA 282
>gi|403286756|ref|XP_003934642.1| PREDICTED: F-box/LRR-repeat protein 14, partial [Saimiri
boliviensis boliviensis]
Length = 349
Score = 84.3 bits (207), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 99/315 (31%), Positives = 170/315 (53%), Gaps = 32/315 (10%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
++ +N++SL+ + C ++D GL H ++ + +L +L+ IT + A + L
Sbjct: 34 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 93
Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT--------NLK 183
L+L C+ I G L+ GL +L+SLN++ C ++D + L+G+T +L+
Sbjct: 94 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLSLE 153
Query: 184 SLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-Q 239
L + C K+TD + ++ +GL L LLNL C ++ A L LS +GSL LNL C
Sbjct: 154 QLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDN 213
Query: 240 LSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGLVN 295
+SD G + +GSL++ L++ F +++ D+ L ++ +GL L+SL+L SC I D+G+
Sbjct: 214 ISDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINR 272
Query: 296 LT----GLCNL---KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 348
+ GL L +C+ ++D + HLS LT ++ T I+ L ++ L
Sbjct: 273 MVRQMHGLRTLNIGQCVRITDKGLELIA-EHLSQLTGIDLYG--CTRITKRGLERITQLP 329
Query: 349 SLKSLNLDARQITDT 363
LK LNL Q+TD+
Sbjct: 330 CLKVLNLGLWQMTDS 344
Score = 74.3 bits (181), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 98/303 (32%), Positives = 153/303 (50%), Gaps = 40/303 (13%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + G ++ + L +
Sbjct: 16 RGIRRVQILSLRRSLSYVIQGMA------NIESLNLSGCYNLTDNGLGHAFVQEIGSLRA 69
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LN+ C ITDS + ++ LK L++ CS +T++G+ + GLQ+L LNL C
Sbjct: 70 LNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSC 127
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG-FNEITDECLVHL- 272
LS +G + R + +GC SL+ L L ++TD L H+
Sbjct: 128 R-------HLSDVGIGHLAGMTRS--AAEGCL------SLEQLTLQDCQKLTDLSLKHIS 172
Query: 273 KGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLEL-SDTQVGSSGLRHLS-GLTNLESI 329
+GLT L LNL CG I D GL++L+ + +L+ L L S + +G+ HL+ G L +
Sbjct: 173 RGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGL 232
Query: 330 NLSFT-GISDGSLRKLA-GLSSLKSLNLDARQITDTGLAALT-SLTGLTHLDLFG-ARIT 385
++SF + D SL +A GL LKSL+L + I+D G+ + + GL L++ RIT
Sbjct: 233 DVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRIT 292
Query: 386 DSG 388
D G
Sbjct: 293 DKG 295
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 103/204 (50%), Gaps = 29/204 (14%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ + + L+ L+ +FC ISD GL HL + +L SL+ R + I+ G+
Sbjct: 163 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 222
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C ++ + +GL L+SL++ C+ D + + + L++
Sbjct: 223 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 282
Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
L I C ++TD G+ + + L +LT ++L GC +++
Sbjct: 283 LNIGQCVRITDKGLELIAEHLSQLTGIDLYGCT-----------------------RITK 319
Query: 243 DGCEKFSKIGSLKVLNLGFNEITD 266
G E+ +++ LKVLNLG ++TD
Sbjct: 320 RGLERITQLPCLKVLNLGLWQMTD 343
>gi|290984286|ref|XP_002674858.1| predicted protein [Naegleria gruberi]
gi|284088451|gb|EFC42114.1| predicted protein [Naegleria gruberi]
Length = 385
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 86/316 (27%), Positives = 143/316 (45%), Gaps = 58/316 (18%)
Query: 64 LSGSDVTDSGLIHLK-----------DCSNLQSLDFNFCI---QISDGGLEHLRGLS-NL 108
+S SD T+S L +++ + N +++ F CI S G + L+G++ N
Sbjct: 87 ISDSDFTESKLENIQFILCKFNNSNFNYENFENVTFTDCIYDDNCSFSGEKQLKGIALNQ 146
Query: 109 TSLSF----RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW 164
S+ F ++NN I IN + L+ ++ + L L+ +LNI
Sbjct: 147 NSIKFEILDQKNNWI-----------INYLDLNNNVGYKLAKFIGKLNNLI---TLNITS 192
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
CN I + K ++ L+NL L+I + + G+ Y+ L LT LN+ +
Sbjct: 193 CN-IGEEGSKEIAKLSNLTELKIDNNNIGSEGVKYIAQLSNLTSLNVYNNNIGT------ 245
Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284
+G ++ K+ +LK LN+ N I DE + L NL SLN+
Sbjct: 246 ------------------EGAKEIGKLLNLKTLNIDNNYIGDEGAQEISKLINLTSLNMY 287
Query: 285 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 344
IG EG ++ L NL+ L + + +G G + +S LTNL S+N+S I D +++
Sbjct: 288 KNSIGYEGAKAISKLGNLRALTIYNNYIGEEGAKEISKLTNLTSLNISNNNIGDEGAKEI 347
Query: 345 AGLSSLKSLNLDARQI 360
LS+L L +D I
Sbjct: 348 TKLSNLTGLKIDNNNI 363
Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 88/166 (53%)
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
+ L +L LN+ C + ++G ++ +K+ +L L + N I E + ++ L+NL SLN+
Sbjct: 179 IGKLNNLITLNITSCNIGEEGSKEIAKLSNLTELKIDNNNIGSEGVKYIAQLSNLTSLNV 238
Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
+ IG EG + L NLK L + + +G G + +S L NL S+N+ I +
Sbjct: 239 YNNNIGTEGAKEIGKLLNLKTLNIDNNYIGDEGAQEISKLINLTSLNMYKNSIGYEGAKA 298
Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 389
++ L +L++L + I + G ++ LT LT L++ I D GA
Sbjct: 299 ISKLGNLRALTIYNNYIGEEGAKEISKLTNLTSLNISNNNIGDEGA 344
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 96/195 (49%)
Query: 199 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 258
++ L L LN+ C + ++ L +L L ++ + +G + +++ +L LN
Sbjct: 178 FIGKLNNLITLNITSCNIGEEGSKEIAKLSNLTELKIDNNNIGSEGVKYIAQLSNLTSLN 237
Query: 259 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 318
+ N I E + L NL++LN+D+ IGDEG ++ L NL L + +G G +
Sbjct: 238 VYNNNIGTEGAKEIGKLLNLKTLNIDNNYIGDEGAQEISKLINLTSLNMYKNSIGYEGAK 297
Query: 319 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 378
+S L NL ++ + I + ++++ L++L SLN+ I D G +T L+ LT L
Sbjct: 298 AISKLGNLRALTIYNNYIGEEGAKEISKLTNLTSLNISNNNIGDEGAKEITKLSNLTGLK 357
Query: 379 LFGARITDSGAAYLR 393
+ I A +R
Sbjct: 358 IDNNNIGYEAAKEIR 372
>gi|410046126|ref|XP_003952131.1| PREDICTED: LOW QUALITY PROTEIN: F-box/LRR-repeat protein 14 [Pan
troglodytes]
Length = 568
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 101/319 (31%), Positives = 170/319 (53%), Gaps = 40/319 (12%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
++ +N++SL+ + C ++D GL H ++ + +L +L+ IT + A + L
Sbjct: 236 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 295
Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LK 183
L+L C+ I G L+ GL +L+SLN++ C ++D + L+G+T L+
Sbjct: 296 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLE 355
Query: 184 SLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-Q 239
L + C K+TD + ++ +GL L LLNL C ++ A L LS +GSL LNL C
Sbjct: 356 QLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDN 415
Query: 240 LSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGL-- 293
+SD G + +GSL++ L++ F +++ D+ L ++ +GL L+SL+L SC I D+G+
Sbjct: 416 ISDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINR 474
Query: 294 --VNLTGLCNL---KCLELSDTQVGSSGL----RHLSGLTNLESINLSFTGISDGSLRKL 344
+ GL L +C+ ++D GL HLS LT ++ T I+ L ++
Sbjct: 475 MVRQMHGLRTLNIGQCVRITD-----KGLELIAEHLSQLTGIDLYGC--TRITKRGLERI 527
Query: 345 AGLSSLKSLNLDARQITDT 363
L LK LNL Q+TD+
Sbjct: 528 TQLPCLKVLNLGLWQMTDS 546
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 95/302 (31%), Positives = 152/302 (50%), Gaps = 38/302 (12%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + G ++ + L +
Sbjct: 218 RGIRRVQILSLRRSLSYVIQGMA------NIESLNLSGCYNLTDNGLGHAFVQEIGSLRA 271
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LN+ C ITDS + ++ LK L++ CS +T++G+ + GLQ+L LNL C
Sbjct: 272 LNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSC 329
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL-K 273
LS +G + R + +GC +G ++ ++TD L H+ +
Sbjct: 330 -------RHLSDVGIGHLAGMTRS--AAEGC-----LGLEQLTLQDCQKLTDLSLKHISR 375
Query: 274 GLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLEL-SDTQVGSSGLRHLS-GLTNLESIN 330
GLT L LNL CG I D GL++L+ + +L+ L L S + +G+ HL+ G L ++
Sbjct: 376 GLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLD 435
Query: 331 LSF-TGISDGSLRKLA-GLSSLKSLNLDARQITDTGLAALT-SLTGLTHLDLFG-ARITD 386
+SF + D SL +A GL LKSL+L + I+D G+ + + GL L++ RITD
Sbjct: 436 VSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITD 495
Query: 387 SG 388
G
Sbjct: 496 KG 497
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 103/204 (50%), Gaps = 29/204 (14%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ + + L+ L+ +FC ISD GL HL + +L SL+ R + I+ G+
Sbjct: 365 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 424
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C ++ + +GL L+SL++ C+ D + + + L++
Sbjct: 425 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 484
Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
L I C ++TD G+ + + L +LT ++L GC +++
Sbjct: 485 LNIGQCVRITDKGLELIAEHLSQLTGIDLYGC-----------------------TRITK 521
Query: 243 DGCEKFSKIGSLKVLNLGFNEITD 266
G E+ +++ LKVLNLG ++TD
Sbjct: 522 RGLERITQLPCLKVLNLGLWQMTD 545
>gi|300697280|ref|YP_003747941.1| leucine-rich-repeat type III effector protein (GALA2) [Ralstonia
solanacearum CFBP2957]
gi|299074004|emb|CBJ53541.1| leucine-rich-repeat type III effector protein (GALA2) [Ralstonia
solanacearum CFBP2957]
Length = 1051
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 103/351 (29%), Positives = 157/351 (44%), Gaps = 7/351 (1%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR 103
+ D+ + +AS +SL S++LSG+ + D+G L + L SL+ + I D G++ L
Sbjct: 685 IGDREVQALASS-ASLTSLNLSGNRIGDAGAQALGRNTVLTSLNVS-ANPIGDTGVQALA 742
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 163
G +LTSL R I G+ A A L LD+ L L SL
Sbjct: 743 GSRSLTSLELR-GIRIGEAGIAALASNTVLRSLDISSNDLSEQSAAELARNQTLTSLKAN 801
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
C +T+ + L+ + +L++L++ + + D+G+ + L LNL P+T L
Sbjct: 802 DCG-LTNGMAQQLARIRSLRTLEVGSNSIGDTGVLAIARNASLRTLNLSHNPITLQGLRP 860
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
L +L L+++R D G SK +L L LGFN I L L SL+L
Sbjct: 861 LELSRTLTSLDVSRIGCGDRGALLLSKNRALTSLKLGFNGIGSAGAQGLTANRTLISLDL 920
Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
I L L L +SD ++ L+ L ++++S +S + R
Sbjct: 921 RGNTIDVAAATALAHTGRLGSLNVSDCKLDDEAASALAESLTLTALDVSMNRLSSQAARA 980
Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRS 394
LAG ++L SLN+ I G AL T LT LD AR D G A R+
Sbjct: 981 LAGNATLTSLNISHNHIGPDGAQALAESTSLTFLD---ARANDIGEAGARA 1028
Score = 74.7 bits (182), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 99/339 (29%), Positives = 156/339 (46%), Gaps = 7/339 (2%)
Query: 57 SSLLSVDLSG---SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ +DLSG + V+++GL L L SLD + +I D ++ L ++LTSL+
Sbjct: 647 PSVRHLDLSGCTGAAVSEAGLADLARRP-LASLDLSRT-RIGDREVQALASSASLTSLNL 704
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
N I G +A L L++ G+ L G L SL ++ I ++ +
Sbjct: 705 S-GNRIGDAGAQALGRNTVLTSLNVSANPIGDTGVQALAGSRSLTSLELRGIR-IGEAGI 762
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
L+ T L+SL IS + +++ A L Q LT L C +T L+ + SL L
Sbjct: 763 AALASNTVLRSLDISSNDLSEQSAAELARNQTLTSLKANDCGLTNGMAQQLARIRSLRTL 822
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+ + D G ++ SL+ LNL N IT + L L+ L SL++ G GD G
Sbjct: 823 EVGSNSIGDTGVLAIARNASLRTLNLSHNPITLQGLRPLELSRTLTSLDVSRIGCGDRGA 882
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
+ L+ L L+L +GS+G + L+ L S++L I + LA L SL
Sbjct: 883 LLLSKNRALTSLKLGFNGIGSAGAQGLTANRTLISLDLRGNTIDVAAATALAHTGRLGSL 942
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
N+ ++ D +AL LT LD+ R++ A L
Sbjct: 943 NVSDCKLDDEAASALAESLTLTALDVSMNRLSSQAARAL 981
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 81/320 (25%), Positives = 139/320 (43%), Gaps = 30/320 (9%)
Query: 14 LVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSG 73
L SR LT + L R + + + +AS + L S+D+S +D+++
Sbjct: 741 LAGSRSLTSLELRGIR--------------IGEAGIAALASN-TVLRSLDISSNDLSEQS 785
Query: 74 LIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINL 133
L L SL N C +++G + L + +L +L +N+I G+ A A +L
Sbjct: 786 AAELARNQTLTSLKANDC-GLTNGMAQQLARIRSLRTLEVG-SNSIGDTGVLAIARNASL 843
Query: 134 VKLDLERCTRIHGGLVNLKGLMKLE------SLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
L+L + L+GL LE SL++ C D LS L SL++
Sbjct: 844 RTLNLSHNP------ITLQGLRPLELSRTLTSLDVSRIGC-GDRGALLLSKNRALTSLKL 896
Query: 188 SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 247
+ + +G L + L L+L G + A +L+ G L LN++ C+L D+
Sbjct: 897 GFNGIGSAGAQGLTANRTLISLDLRGNTIDVAAATALAHTGRLGSLNVSDCKLDDEAASA 956
Query: 248 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 307
++ +L L++ N ++ + L G L SLN+ IG +G L +L L+
Sbjct: 957 LAESLTLTALDVSMNRLSSQAARALAGNATLTSLNISHNHIGPDGAQALAESTSLTFLDA 1016
Query: 308 SDTQVGSSGLRHLSGLTNLE 327
+G +G R L T ++
Sbjct: 1017 RANDIGEAGARALENNTRMQ 1036
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 64/122 (52%), Gaps = 4/122 (3%)
Query: 276 TNLESLNLDSC---GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 332
++ L+L C + + GL +L L L+LS T++G ++ L+ +L S+NLS
Sbjct: 647 PSVRHLDLSGCTGAAVSEAGLADLA-RRPLASLDLSRTRIGDREVQALASSASLTSLNLS 705
Query: 333 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
I D + L + L SLN+ A I DTG+ AL LT L+L G RI ++G A L
Sbjct: 706 GNRIGDAGAQALGRNTVLTSLNVSANPIGDTGVQALAGSRSLTSLELRGIRIGEAGIAAL 765
Query: 393 RS 394
S
Sbjct: 766 AS 767
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 70/203 (34%), Positives = 99/203 (48%), Gaps = 31/203 (15%)
Query: 197 IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 256
++ L LT L L+G +T A L +L A +L +L+L+ C GS K
Sbjct: 99 LSELHHYPNLTSLQLKGN-LTLADLKALPA--TLRHLDLSAC------------TGSAK- 142
Query: 257 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 316
+ E + +L GL LESLN+ IGD G L +L+ L ++ +G++G
Sbjct: 143 --------SSEAIAYLAGLP-LESLNVAGADIGDGGARLLAANPSLRALNAANGGIGAAG 193
Query: 317 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 376
R L+ L S++LS GI D R LAG SL +L + +TD G AL LT
Sbjct: 194 ARALAESPVLTSLDLSQNGIGDEGARALAGSRSLTNLAVLNCLVTDVGARALAGNRTLTA 253
Query: 377 LDLFGARITDSG-----AAYLRS 394
LDL G IT++G AAY R+
Sbjct: 254 LDL-GNLITETGNELEQAAYDRT 275
Score = 38.5 bits (88), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 79/286 (27%), Positives = 125/286 (43%), Gaps = 20/286 (6%)
Query: 99 LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT---RIHGGLVNLKGLM 155
L L NLTSL + N +T +KA L LDL CT + + L GL
Sbjct: 99 LSELHHYPNLTSLQLKGN--LTLADLKALPA--TLRHLDLSACTGSAKSSEAIAYLAGL- 153
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215
LESLN+ + I D + L+ +L++L + + +G L LT L+L
Sbjct: 154 PLESLNVAGAD-IGDGGARLLAANPSLRALNAANGGIGAAGARALAESPVLTSLDLSQNG 212
Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 275
+ +L+ SL L + C ++D G + +L L+LG N IT+
Sbjct: 213 IGDEGARALAGSRSLTNLAVLNCLVTDVGARALAGNRTLTALDLG-NLITETG------- 264
Query: 276 TNLESLNLDSCG--IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333
LE D I +G L +L L + G +G++ L+G + L S+N+++
Sbjct: 265 NELEQAAYDRTANEITAQGAWALAQNRSLTSLSIQGNLCGDAGVQALAGSSTLTSLNVAY 324
Query: 334 TGISDGSLRKLAGLSSLKSLNLDARQ-ITDTGLAALTSLTGLTHLD 378
T ++ S ++LA L SL++ + D G+ L LT LD
Sbjct: 325 TDMTLESAKELARNPVLTSLSVRWNYGLGDAGVVELAKSPSLTLLD 370
>gi|47219755|emb|CAG03382.1| unnamed protein product [Tetraodon nigroviridis]
Length = 388
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 103/312 (33%), Positives = 153/312 (49%), Gaps = 46/312 (14%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFA-----GLINLVKLDLERCTRIHGGLVNLKGLMKL 157
RG+ + LS RR+ + QGM G NL L G ++ + L
Sbjct: 71 RGIKKVQILSLRRSLSYVIQGMPHIESLNLCGCFNLTDNGL--------GHAFVQDIPSL 122
Query: 158 ESLNIKWCNCITDSDMKPLSG-LTNLKSLQI-SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LN+ C ITDS + ++ L NL+ L++ CS +T++G+ + GL +L LNL C
Sbjct: 123 RVLNLSLCKQITDSSLGRIAQYLKNLEVLELGGCSNITNTGLLLVAWGLHRLKSLNLRSC 182
Query: 215 -PVTAACLDSLSALG--------SLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-N 262
V+ + LS + SL L L CQ L+D + SK + LKVLNL F
Sbjct: 183 RHVSDVGIGHLSGMTRSAAEGCLSLEKLTLQDCQKLTDLSLKHVSKGLNKLKVLNLSFCG 242
Query: 263 EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRH 319
I+D ++HL +T+L SLNL SC I D G+++L G L L++S ++G L H
Sbjct: 243 GISDGGMIHLSHMTHLCSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKIGDQSLAH 302
Query: 320 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALT-SLTGLTHL 377
++ G+ DG R + + LK+LN+ +ITD GL + LT LT +
Sbjct: 303 IA------------QGLDDGINRMVRQMHELKTLNIGQCGRITDKGLELIADHLTQLTGI 350
Query: 378 DLFG-ARITDSG 388
DL+G +IT G
Sbjct: 351 DLYGCTKITKRG 362
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 90/310 (29%), Positives = 152/310 (49%), Gaps = 69/310 (22%)
Query: 68 DVTDSGLIH--LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMK 125
++TD+GL H ++D +L+ L+ + C QI+D L + AQ +K
Sbjct: 105 NLTDNGLGHAFVQDIPSLRVLNLSLCKQITDSSLGRI------------------AQYLK 146
Query: 126 AFAGLINLVKLDLERCTRI--HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT--- 180
NL L+L C+ I G L+ GL +L+SLN++ C ++D + LSG+T
Sbjct: 147 ------NLEVLELGGCSNITNTGLLLVAWGLHRLKSLNLRSCRHVSDVGIGHLSGMTRSA 200
Query: 181 -----NLKSLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFY 232
+L+ L + C K+TD + ++ KGL KL +LNL C ++ + LS + L
Sbjct: 201 AEGCLSLEKLTLQDCQKLTDLSLKHVSKGLNKLKVLNLSFCGGISDGGMIHLSHMTHLCS 260
Query: 233 LNLNRC-QLSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL------------KGLT 276
LNL C +SD G + +GSL++ L++ F ++I D+ L H+ + +
Sbjct: 261 LNLRSCDNISDTGIMHLA-MGSLRLSGLDVSFCDKIGDQSLAHIAQGLDDGINRMVRQMH 319
Query: 277 NLESLNLDSCG-IGDEG-------LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 328
L++LN+ CG I D+G L LTG+ C T++ GL ++ L L+
Sbjct: 320 ELKTLNIGQCGRITDKGLELIADHLTQLTGIDLYGC-----TKITKRGLERITQLPCLKV 374
Query: 329 INLSFTGISD 338
+NL +++
Sbjct: 375 LNLGLWQMTE 384
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 130/252 (51%), Gaps = 29/252 (11%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEH 101
+ D + IA +L ++L G S++T++GL+ + L+SL+ C +SD G+ H
Sbjct: 133 ITDSSLGRIAQYLKNLEVLELGGCSNITNTGLLLVAWGLHRLKSLNLRSCRHVSDVGIGH 192
Query: 102 LRGLS--------NLTSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRIH-GGLVNL 151
L G++ +L L+ + +T +K + GL L L+L C I GG+++L
Sbjct: 193 LSGMTRSAAEGCLSLEKLTLQDCQKLTDLSLKHVSKGLNKLKVLNLSFCGGISDGGMIHL 252
Query: 152 KGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYL--------- 200
+ L SLN++ C+ I+D+ + L+ G L L +S C K+ D +A++
Sbjct: 253 SHMTHLCSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKIGDQSLAHIAQGLDDGIN 312
Query: 201 ---KGLQKLTLLNLEGC-PVTAACLDSLS-ALGSLFYLNLNRC-QLSDDGCEKFSKIGSL 254
+ + +L LN+ C +T L+ ++ L L ++L C +++ G E+ +++ L
Sbjct: 313 RMVRQMHELKTLNIGQCGRITDKGLELIADHLTQLTGIDLYGCTKITKRGLERITQLPCL 372
Query: 255 KVLNLGFNEITD 266
KVLNLG ++T+
Sbjct: 373 KVLNLGLWQMTE 384
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 76/236 (32%), Positives = 119/236 (50%), Gaps = 40/236 (16%)
Query: 176 LSGLTNLKSLQI-SCSKVTDSGI--AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
+ G+ +++SL + C +TD+G+ A+++ + L +LNL C S+LG +
Sbjct: 89 IQGMPHIESLNLCGCFNLTDNGLGHAFVQDIPSLRVLNLSLCKQITD-----SSLGRIAQ 143
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDE 291
N L GC + G L V GL L+SLNL SC + D
Sbjct: 144 YLKNLEVLELGGCSNITNTGLLLVA---------------WGLHRLKSLNLRSCRHVSDV 188
Query: 292 GLVNLTGLC--------NLKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISDGS 340
G+ +L+G+ +L+ L L D Q + L+H+S GL L+ +NLSF G ISDG
Sbjct: 189 GIGHLSGMTRSAAEGCLSLEKLTLQDCQKLTDLSLKHVSKGLNKLKVLNLSFCGGISDGG 248
Query: 341 LRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL 392
+ L+ ++ L SLNL + I+DTG+ A+ SL L+ LD+ F +I D A++
Sbjct: 249 MIHLSHMTHLCSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKIGDQSLAHI 303
>gi|66807643|ref|XP_637544.1| hypothetical protein DDB_G0286583 [Dictyostelium discoideum AX4]
gi|60465980|gb|EAL64047.1| hypothetical protein DDB_G0286583 [Dictyostelium discoideum AX4]
Length = 722
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 119/373 (31%), Positives = 188/373 (50%), Gaps = 43/373 (11%)
Query: 47 KWMDVIASQGSSLLSVDLSG--SDVTDSGLIH-LKDCSNLQSLDFNFCIQISDGGLEHLR 103
K MD I + G+ + S+DLS + V + L++ K + L ++ F C ++D GL+ R
Sbjct: 309 KKMDQIVASGARIYSLDLSHQFAVVNNDFLLNCFKYMAELSNVYFRNCENLNDIGLQIFR 368
Query: 104 GLS---NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER--CTRIHGGLVNLKGLMKLE 158
+ NL +L R +N IT G++ GL+NL +L L CT I GL L L+KL+
Sbjct: 369 QPNFEKNLKTLDLR-DNRITDVGIRNLKGLLNLEELYLGSTGCTDI--GLALLCNLLKLK 425
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC-PVT 217
+L++ CN ITDS M + T LK L +S ++VTD GI + L L L + C +T
Sbjct: 426 TLDVSKCN-ITDSSMDIICRFTELKFLYLSGTQVTDKGINTISKLPNLIQLYVSNCLRIT 484
Query: 218 AACLDSLSALG-SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGL 275
L L+ LG +L L++ + ++ +G + L+ L L G + I D + HL L
Sbjct: 485 NQSLFFLAYLGKTLKLLDIFQTKIGLNGFIQLRMFKQLQFLVLPGRDSINDATIGHLNSL 544
Query: 276 TNLESLNL-DSCGIGDEGLVNLTGLCNLKCLELSDTQVG-SSGLRHLSGLTNLESINLSF 333
+NL L+L D I D L LT L +L L LS+T++ +S + + + +LE ++L+
Sbjct: 545 SNLRKLDLSDYRNISD--LSPLTNLQSLTELLLSNTKISDNSIINSIKTMDSLEVLSLNK 602
Query: 334 TGIS----------------------DG-SLRKLAGLSSLKSLNLDARQITDTGLAALTS 370
T ++ DG SL L + SL+ L++ ITD + L
Sbjct: 603 TEVTTEGVSQLVNLNLTSLSLSSTKIDGKSLYYLGQMKSLQKLDISFNDITDNSMDYLKP 662
Query: 371 LTG-LTHLDLFGA 382
+ L+H+DL G
Sbjct: 663 IADTLSHIDLRGT 675
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 69/212 (32%), Positives = 110/212 (51%), Gaps = 6/212 (2%)
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
NLK+L + +++TD GI LKGL L L L T L L L L L++++C +
Sbjct: 375 NLKTLDLRDNRITDVGIRNLKGLLNLEELYLGSTGCTDIGLALLCNLLKLKTLDVSKCNI 434
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGL 299
+D + + LK L L ++TD+ + + L NL L + +C I ++ L L L
Sbjct: 435 TDSSMDIICRFTELKFLYLSGTQVTDKGINTISKLPNLIQLYVSNCLRITNQSLFFLAYL 494
Query: 300 -CNLKCLELSDTQVGSSGLRHLSGLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNL-D 356
LK L++ T++G +G L L+ + L I+D ++ L LS+L+ L+L D
Sbjct: 495 GKTLKLLDIFQTKIGLNGFIQLRMFKQLQFLVLPGRDSINDATIGHLNSLSNLRKLDLSD 554
Query: 357 ARQITDTGLAALTSLTGLTHLDLFGARITDSG 388
R I+D L+ LT+L LT L L +I+D+
Sbjct: 555 YRNISD--LSPLTNLQSLTELLLSNTKISDNS 584
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 93/180 (51%), Gaps = 9/180 (5%)
Query: 220 CLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIG---SLKVLNLGFNEITDECLVHLKGL 275
C ++ L ++++ N C+ L+D G + F + +LK L+L N ITD + +LKGL
Sbjct: 341 CFKYMAELSNVYFRN---CENLNDIGLQIFRQPNFEKNLKTLDLRDNRITDVGIRNLKGL 397
Query: 276 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 335
NLE L L S G D GL L L LK L++S + S + + T L+ + LS T
Sbjct: 398 LNLEELYLGSTGCTDIGLALLCNLLKLKTLDVSKCNITDSSMDIICRFTELKFLYLSGTQ 457
Query: 336 ISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSL-TGLTHLDLFGARITDSGAAYLR 393
++D + ++ L +L L + + +IT+ L L L L LD+F +I +G LR
Sbjct: 458 VTDKGINTISKLPNLIQLYVSNCLRITNQSLFFLAYLGKTLKLLDIFQTKIGLNGFIQLR 517
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 88/187 (47%), Gaps = 18/187 (9%)
Query: 203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 262
+Q+L L + +T +D + A G+ Y S D +F+ + + +LN
Sbjct: 293 IQRLIELMVSSNRLTRKKMDQIVASGARIY--------SLDLSHQFAVVNNDFLLN---- 340
Query: 263 EITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 321
C ++ L+N+ N ++ IG + NLK L+L D ++ G+R+L
Sbjct: 341 -----CFKYMAELSNVYFRNCENLNDIGLQIFRQPNFEKNLKTLDLRDNRITDVGIRNLK 395
Query: 322 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 381
GL NLE + L TG +D L L L LK+L++ ITD+ + + T L L L G
Sbjct: 396 GLLNLEELYLGSTGCTDIGLALLCNLLKLKTLDVSKCNITDSSMDIICRFTELKFLYLSG 455
Query: 382 ARITDSG 388
++TD G
Sbjct: 456 TQVTDKG 462
>gi|291392871|ref|XP_002712822.1| PREDICTED: F-box/LRR-repeat protein 14-like [Oryctolagus cuniculus]
Length = 400
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 98/315 (31%), Positives = 169/315 (53%), Gaps = 32/315 (10%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
++ +N++SL+ + C ++D GL H ++ + +L +L+ IT + A + L
Sbjct: 86 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 145
Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LK 183
L+L C+ I G L+ GL +L++LN++ C ++D + L+G+T L+
Sbjct: 146 EVLELGGCSNITNTGLLLIAWGLQRLKTLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLE 205
Query: 184 SLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-Q 239
L + C K+TD + ++ +GL L LLNL C ++ A L LS +GSL LNL C
Sbjct: 206 QLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDN 265
Query: 240 LSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGL-- 293
+SD G + +GSL++ L++ F +++ D+ L ++ +GL L+SL+L SC I D+G+
Sbjct: 266 ISDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINR 324
Query: 294 --VNLTGLCNL---KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 348
+ GL L +C+ ++D + HLS LT ++ T I+ L ++ L
Sbjct: 325 MVRQMHGLRTLNIGQCVRITDKGLELIA-EHLSQLTGIDLYGC--TRITKRGLERITQLP 381
Query: 349 SLKSLNLDARQITDT 363
LK LNL Q+TD+
Sbjct: 382 CLKVLNLGLWQMTDS 396
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 103/314 (32%), Positives = 162/314 (51%), Gaps = 36/314 (11%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + G ++ + L +
Sbjct: 68 RGIRRVQILSLRRSLSYVIQGMA------NIESLNLSGCYNLTDNGLGHAFVQEIGSLRA 121
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LN+ C ITDS + ++ LK L++ CS +T++G+ + GLQ+L LNL C
Sbjct: 122 LNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKTLNLRSC 179
Query: 215 PVTA-------ACLDSLSALG--SLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-N 262
+ A + +A G L L L CQ L+D + S+ + L++LNL F
Sbjct: 180 RHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCG 239
Query: 263 EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRH 319
I+D L+HL + +L SLNL SC I D G+++L G L L++S +VG L +
Sbjct: 240 GISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAY 299
Query: 320 LS-GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALTS-LTGLT 375
++ GL L+S++L ISD + R + + L++LN+ +ITD GL + L+ LT
Sbjct: 300 IAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLT 359
Query: 376 HLDLFG-ARITDSG 388
+DL+G RIT G
Sbjct: 360 GIDLYGCTRITKRG 373
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 72/266 (27%), Positives = 127/266 (47%), Gaps = 43/266 (16%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEH 101
+ D + IA L ++L G S++T++GL+ + L++L+ C +SD G+ H
Sbjct: 130 ITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKTLNLRSCRHLSDVGIGH 189
Query: 102 LRGLSN--------LTSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRIH-GGLVNL 151
L G++ L L+ + +T +K + GL L L+L C I GL++L
Sbjct: 190 LAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHL 249
Query: 152 KGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYL-KGLQKLTL 208
+ L SLN++ C+ I+D+ + L+ G L L +S C KV D +AY+ +GL L
Sbjct: 250 SHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKS 309
Query: 209 LNLEGCPVTAACLDSL-SALGSLFYLNLNRC---------------------------QL 240
L+L C ++ ++ + + L LN+ +C ++
Sbjct: 310 LSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRI 369
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITD 266
+ G E+ +++ LKVLNLG ++TD
Sbjct: 370 TKRGLERITQLPCLKVLNLGLWQMTD 395
>gi|13905232|gb|AAH06913.1| Fbx14l protein, partial [Mus musculus]
Length = 327
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 99/315 (31%), Positives = 169/315 (53%), Gaps = 32/315 (10%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
++ +N++SL+ + C ++D GL H ++ + +L +L+ IT + A + L
Sbjct: 13 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 72
Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LK 183
L+L C+ I G L+ GL +L+SLN++ C ++D + L+G+T L+
Sbjct: 73 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLE 132
Query: 184 SLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-Q 239
L + C K+TD + ++ +GL L LLNL C ++ A L LS +GSL LNL C
Sbjct: 133 QLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDN 192
Query: 240 LSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGLVN 295
+SD G + +GSL++ L++ F +++ D+ L ++ +GL L+SL+L SC I D+G+
Sbjct: 193 ISDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINR 251
Query: 296 LT----GLCNL---KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 348
+ GL L +C+ ++D + HLS LT ++ T I+ L ++ L
Sbjct: 252 MVRQMHGLRTLNIGQCVRITDKGLELIA-EHLSQLTGIDLYG--CTRITKRGLERITQLP 308
Query: 349 SLKSLNLDARQITDT 363
LK LNL Q+TD+
Sbjct: 309 CLKVLNLGLWQMTDS 323
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 93/294 (31%), Positives = 149/294 (50%), Gaps = 38/294 (12%)
Query: 111 LSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLESLNIKWCNC 167
LS RR+ + QGM N+ L+L C + G ++ + L +LN+ C
Sbjct: 3 LSLRRSLSYVIQGMA------NIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQ 56
Query: 168 ITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNLEGCPVTAACLD 222
ITDS + ++ LK L++ CS +T++G+ + GLQ+L LNL C
Sbjct: 57 ITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCR------- 107
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL-KGLTNLESL 281
LS +G + R + +GC ++ +L+ ++TD L H+ +GLT L L
Sbjct: 108 HLSDVGIGHLAGMTRS--AAEGCLGLEQL-TLQ----DCQKLTDLSLKHISRGLTGLRLL 160
Query: 282 NLDSCG-IGDEGLVNLTGLCNLKCLEL-SDTQVGSSGLRHLS-GLTNLESINLSFT-GIS 337
NL CG I D GL++L+ + +L+ L L S + +G+ HL+ G L +++SF +
Sbjct: 161 NLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVG 220
Query: 338 DGSLRKLA-GLSSLKSLNLDARQITDTGLAALT-SLTGLTHLDLFG-ARITDSG 388
D SL +A GL LKSL+L + I+D G+ + + GL L++ RITD G
Sbjct: 221 DQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKG 274
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 103/204 (50%), Gaps = 29/204 (14%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ + + L+ L+ +FC ISD GL HL + +L SL+ R + I+ G+
Sbjct: 142 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 201
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C ++ + +GL L+SL++ C+ D + + + L++
Sbjct: 202 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 261
Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
L I C ++TD G+ + + L +LT ++L GC +++
Sbjct: 262 LNIGQCVRITDKGLELIAEHLSQLTGIDLYGCT-----------------------RITK 298
Query: 243 DGCEKFSKIGSLKVLNLGFNEITD 266
G E+ +++ LKVLNLG ++TD
Sbjct: 299 RGLERITQLPCLKVLNLGLWQMTD 322
>gi|343420997|emb|CCD18942.1| leucine-rich repeat protein, putative [Trypanosoma vivax Y486]
Length = 623
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 113/338 (33%), Positives = 173/338 (51%), Gaps = 35/338 (10%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
+DV+ LI SNL++LD + C I+D + L +SNL S+ IT +
Sbjct: 7 TDVSPLSLI-----SNLRTLDLSHCTGITD--VLPLSLMSNLCSVYLSHCTGIT--DVPP 57
Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
+ L L L+L CT I + L L +LE+LN+ +C IT D+ PLS L+ L++L
Sbjct: 58 LSKLSRLETLNLMYCTGI-TDVSPLSKLSRLETLNLMYCTGIT--DVSPLSKLSRLETLN 114
Query: 187 I-SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 245
+ C+ +TD ++ L + L L+L C L LS + +L L L+ C D
Sbjct: 115 LMYCTGITD--VSPLSLISNLRTLDLSHCTGITDVL-PLSLMSNLCSLYLSHCTGITD-V 170
Query: 246 EKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLK 303
SK+ L+ LNL + ITD + L L+ LE+LNL C GI D ++L NL+
Sbjct: 171 PPLSKLSRLETLNLMYCTGITD--VSPLSKLSRLETLNLMYCTGITDVSPLSLIS--NLR 226
Query: 304 CLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDARQITD 362
L+LS G + + LS ++NL S+ LS TGI+D + L+ LS L++LNL +
Sbjct: 227 TLDLSHCT-GITDVLPLSLMSNLCSVYLSHCTGITD--VPPLSKLSRLETLNL----MYC 279
Query: 363 TGLAALTSLTGLTHLD----LFGARITDSGAAYLRSKF 396
TG+ ++ L+ L+ L+ ++ ITD L S
Sbjct: 280 TGITDVSPLSKLSRLETLNLMYCTGITDVSPLSLMSNL 317
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 118/392 (30%), Positives = 179/392 (45%), Gaps = 63/392 (16%)
Query: 50 DVIA-SQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSN 107
DV+ S S+L SV LS + +TD + L S L++L+ +C I+D + L LS
Sbjct: 238 DVLPLSLMSNLCSVYLSHCTGITD--VPPLSKLSRLETLNLMYCTGITD--VSPLSKLSR 293
Query: 108 LTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNC 167
L +L+ IT + + + NL L L CT I + L L +LE+LN+ +C
Sbjct: 294 LETLNLMYCTGIT--DVSPLSLMSNLCSLYLSHCTGI-TDVPPLSKLSRLETLNLMYCTG 350
Query: 168 ITD---------------------SDMKPLSGLTNLKSLQIS-CSKVTD----------- 194
ITD +D+ PLS L+NL++L +S C+ +TD
Sbjct: 351 ITDVSPLSLMSRLEMLDVSGCTGITDVSPLSDLSNLRTLDLSYCTGITDVSPLSEIIELA 410
Query: 195 ----------SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 244
+ ++ LK ++KL +L L GC + + LS L L L+L C D
Sbjct: 411 NLYMIGLTSITDVSLLKKVKKLEVLYLSGC-TSITDVSPLSTLSGLEKLDLRYCTGITD- 468
Query: 245 CEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNL 302
S + L+ L+L + ITD + L L+ L L+L C GI D L+ L L
Sbjct: 469 VSPLSTLSGLEKLDLRYCTGITD--VSPLSTLSGLGKLDLSGCTGITDVS--PLSTLSRL 524
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
+ L+LS+ S + L L L + LS I+D LR + L L++L+L TD
Sbjct: 525 ETLDLSECPGVMSDVDSLCSLRMLRELRLSRLAINDAVLRDIVVLKCLRTLDLS--HCTD 582
Query: 363 -TGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
T ++ L+++ L L L G SG LR
Sbjct: 583 VTDVSPLSTVIRLEVLVLRGYTGLRSGLESLR 614
>gi|355785801|gb|EHH65984.1| F-box and leucine-rich repeat protein 14 [Macaca fascicularis]
Length = 330
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 99/311 (31%), Positives = 167/311 (53%), Gaps = 32/311 (10%)
Query: 81 SNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-LVKLD 137
+N++SL+ + C ++D GL H ++ + +L +L+ IT + A + L L+
Sbjct: 2 ANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGLEVLE 61
Query: 138 LERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LKSLQI 187
L C+ I G L+ GL +L+SLN++ C ++D + L+G+T L+ L +
Sbjct: 62 LGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLEQLTL 121
Query: 188 S-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDD 243
C K+TD + ++ +GL L LLNL C ++ A L LS +GSL LNL C +SD
Sbjct: 122 QDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDT 181
Query: 244 GCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGLVNLT-- 297
G + +GSL++ L++ F +++ D+ L ++ +GL L+SL+L SC I D+G+ +
Sbjct: 182 GIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQ 240
Query: 298 --GLCNL---KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
GL L +C+ ++D + HLS LT ++ T I+ L ++ L LK
Sbjct: 241 MHGLRTLNIGQCVRITDKGLELIA-EHLSQLTGIDLYG--CTRITKRGLERITQLPCLKV 297
Query: 353 LNLDARQITDT 363
LNL Q+TD+
Sbjct: 298 LNLGLWQMTDS 308
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 88/262 (33%), Positives = 136/262 (51%), Gaps = 30/262 (11%)
Query: 154 LMKLESLNIKWCNCITDSDMKP--LSGLTNLKSLQIS-CSKVTDSGIA----YLKGLQKL 206
+ +ESLN+ C +TD+ + + + +L++L +S C ++TDS + YLKGL+
Sbjct: 1 MANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGLE-- 58
Query: 207 TLLNLEGCP--VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKI------GSLKVL 257
+L L GC L L L LNL C+ LSD G + + G L +
Sbjct: 59 -VLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLE 117
Query: 258 NLGFNE---ITDECLVHL-KGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLEL-SDTQ 311
L + +TD L H+ +GLT L LNL CG I D GL++L+ + +L+ L L S
Sbjct: 118 QLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDN 177
Query: 312 VGSSGLRHLS-GLTNLESINLSF-TGISDGSLRKLA-GLSSLKSLNLDARQITDTGLAAL 368
+ +G+ HL+ G L +++SF + D SL +A GL LKSL+L + I+D G+ +
Sbjct: 178 ISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRM 237
Query: 369 T-SLTGLTHLDLFG-ARITDSG 388
+ GL L++ RITD G
Sbjct: 238 VRQMHGLRTLNIGQCVRITDKG 259
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 103/204 (50%), Gaps = 29/204 (14%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ + + L+ L+ +FC ISD GL HL + +L SL+ R + I+ G+
Sbjct: 127 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 186
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C ++ + +GL L+SL++ C+ D + + + L++
Sbjct: 187 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 246
Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
L I C ++TD G+ + + L +LT ++L GC +++
Sbjct: 247 LNIGQCVRITDKGLELIAEHLSQLTGIDLYGCT-----------------------RITK 283
Query: 243 DGCEKFSKIGSLKVLNLGFNEITD 266
G E+ +++ LKVLNLG ++TD
Sbjct: 284 RGLERITQLPCLKVLNLGLWQMTD 307
>gi|302804592|ref|XP_002984048.1| hypothetical protein SELMODRAFT_445748 [Selaginella moellendorffii]
gi|300148400|gb|EFJ15060.1| hypothetical protein SELMODRAFT_445748 [Selaginella moellendorffii]
Length = 657
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 107/390 (27%), Positives = 183/390 (46%), Gaps = 46/390 (11%)
Query: 43 GVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
G+ D + ++A L ++DLS ++VTD GL + +L+ L+ C + DGGL L
Sbjct: 190 GITDIGIALVAVNCKQLRTLDLSYTEVTDEGLASIATLHSLEVLNLVSCNNVDDGGLRSL 249
Query: 103 -RGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRIHGGLVN---------- 150
R +L L R + ++ G+ A A ++L +L L C+ I L+
Sbjct: 250 KRSCRSLLKLDVSRCSNVSDAGLAALATSHLSLEQLTLSYCSIITDDLLATFQKFDHLQS 309
Query: 151 ----------------LKGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKSLQISCSK-V 192
+G +L+ L++ C +TD + ++ G T L L ++C + +
Sbjct: 310 IVLDGCEIARNGLPFIARGCKQLKELSLSKCRGVTDRGIAAVAQGCTALHKLNLTCCREL 369
Query: 193 TDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGS----LFYLNLNRCQLSDDGCEK 247
TD+ + + K + L L +E C + D L LG L L+ C +SD G +
Sbjct: 370 TDASLCRISKDCKGLESLKMESCSLITE--DGLCGLGEGCPRLEELDFTECNMSDTGLKY 427
Query: 248 FSKIGSLKVLNLGF-NEITDECLVHLKG-LTNLESLNL-DSCGIGDEGLVNLTGLC-NLK 303
SK +L+ L LGF + ITD+ + H+ NL L+ S GIGD G+ + C LK
Sbjct: 428 ISKCTALRSLKLGFCSTITDKGVAHIGARCCNLRELDFYRSKGIGDAGVAAIASGCPKLK 487
Query: 304 CLELSD-TQVGSSGLRHLSGLTNLESINLS-FTGISDGSLRKLA-GLSSLKSLNLD-ARQ 359
L+LS +++ L+ LS L L+ + L +S L +A G L +++ Q
Sbjct: 488 LLDLSYCSKITDCSLQSLSQLRELQRVELRGCVLVSSTGLAVMASGCKRLTEIDIKRCSQ 547
Query: 360 ITDTGLAALTSL-TGLTHLDLFGARITDSG 388
I + G++AL+ GL +++ I+++G
Sbjct: 548 IGNAGVSALSFFCPGLRMMNISYCPISNAG 577
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 108/381 (28%), Positives = 174/381 (45%), Gaps = 64/381 (16%)
Query: 56 GSSLLSVDLS---GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS 112
G+ L S++LS G GL+ C++L +D ++C + D + L +SNL +L
Sbjct: 99 GNRLASINLSRVGGFTSAGLGLLARSCCASLTDVDLSYCSNLKDSDVLALAQISNLQALR 158
Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 172
++IT G+ A ++KL L +K C ITD
Sbjct: 159 LTGCHSITDIGLGCLAAGCKMLKL-----------------------LTLKGCLGITDIG 195
Query: 173 MKPLS-GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLS-ALGS 229
+ ++ L++L +S ++VTD G+A + L L +LNL C V L SL + S
Sbjct: 196 IALVAVNCKQLRTLDLSYTEVTDEGLASIATLHSLEVLNLVSCNNVDDGGLRSLKRSCRS 255
Query: 230 LFYLNLNRC-QLSDDGCEKFSKIG-SLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC 286
L L+++RC +SD G + SL+ L L + + ITD+ L + +L+S+ LD C
Sbjct: 256 LLKLDVSRCSNVSDAGLAALATSHLSLEQLTLSYCSIITDDLLATFQKFDHLQSIVLDGC 315
Query: 287 GIGDEGLVNLTGLC-NLKCLELSDTQ-VGSSGLRHLS-GLTNLESINLS-FTGISDGSLR 342
I GL + C LK L LS + V G+ ++ G T L +NL+ ++D SL
Sbjct: 316 EIARNGLPFIARGCKQLKELSLSKCRGVTDRGIAAVAQGCTALHKLNLTCCRELTDASLC 375
Query: 343 KLA----GLSSLK-----------------------SLNLDARQITDTGLAALTSLTGLT 375
+++ GL SLK L+ ++DTGL ++ T L
Sbjct: 376 RISKDCKGLESLKMESCSLITEDGLCGLGEGCPRLEELDFTECNMSDTGLKYISKCTALR 435
Query: 376 HLDL-FGARITDSGAAYLRSK 395
L L F + ITD G A++ ++
Sbjct: 436 SLKLGFCSTITDKGVAHIGAR 456
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 128/292 (43%), Gaps = 48/292 (16%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHL-KDCSNLQSLDFNF 90
L++L L + GV D+ + +A ++L ++L+ ++TD+ L + KDC L+SL
Sbjct: 332 LKELSLSKCRGVTDRGIAAVAQGCTALHKLNLTCCRELTDASLCRISKDCKGLESLKMES 391
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN 150
C I++ GL GL G L +LD C GL
Sbjct: 392 CSLITEDGLC---GLGE---------------------GCPRLEELDFTECNMSDTGLKY 427
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSG-LTNLKSLQISCSK-VTDSGIAYLK-GLQKLT 207
+ L SL + +C+ ITD + + NL+ L SK + D+G+A + G KL
Sbjct: 428 ISKCTALRSLKLGFCSTITDKGVAHIGARCCNLRELDFYRSKGIGDAGVAAIASGCPKLK 487
Query: 208 LLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQLSDD--------GCEKFSKIGSLK--- 255
LL+L C +T L SLS L L + L C L GC++ ++I +
Sbjct: 488 LLDLSYCSKITDCSLQSLSQLRELQRVELRGCVLVSSTGLAVMASGCKRLTEIDIKRCSQ 547
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 307
+ N G + ++ C L +N+ C I + GL++L L L+ + L
Sbjct: 548 IGNAGVSALSFFC-------PGLRMMNISYCPISNAGLLSLPRLSCLQSVRL 592
Score = 43.1 bits (100), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 75/162 (46%), Gaps = 28/162 (17%)
Query: 29 RDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDF 88
R C L++L + G+ D + IAS C L+ LD
Sbjct: 456 RCCNLRELDFYRSKGIGDAGVAAIAS------------------------GCPKLKLLDL 491
Query: 89 NFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRI-HG 146
++C +I+D L+ L L L + R +++ G+ A G L ++D++RC++I +
Sbjct: 492 SYCSKITDCSLQSLSQLRELQRVELRGCVLVSSTGLAVMASGCKRLTEIDIKRCSQIGNA 551
Query: 147 GLVNLKGLMK-LESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
G+ L L +NI +C I+++ + L L+ L+S+++
Sbjct: 552 GVSALSFFCPGLRMMNISYCP-ISNAGLLSLPRLSCLQSVRL 592
>gi|290982059|ref|XP_002673748.1| predicted protein [Naegleria gruberi]
gi|284087334|gb|EFC41004.1| predicted protein [Naegleria gruberi]
Length = 370
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 76/294 (25%), Positives = 133/294 (45%), Gaps = 3/294 (1%)
Query: 99 LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158
L+ L + L L+ NN I G+K L L L++ C I L +L L L
Sbjct: 24 LQVLDSMKELKKLNLEYNN-IDPNGIKYLGSLKQLTDLNVS-CCYIGLNLSHLILLKALT 81
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
LNI N I K + + L L I + + G Y+ GL++LT LN+ +
Sbjct: 82 HLNI-TSNNIRAEGAKYIGEMKQLTKLSIGSNDIGPEGAKYISGLEQLTYLNIRSNDIKK 140
Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 278
+S + L YLN+ + D G S++ L L++G+N+I +E ++ L N+
Sbjct: 141 DGAKHISEMKQLTYLNVVGNHICDGGARFISEMKQLSNLSVGYNDIGEEGAKYISELMNV 200
Query: 279 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
L++ I ++G + + L L + +G G +++S L L +++S I D
Sbjct: 201 SILDIGGNSINEKGAKFIGEMKQLTDLRIYCCNIGVEGTQYISSLNQLTHLSISTNNIGD 260
Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
+ + + L L++ +I G ++ L L +L + G I D+GA ++
Sbjct: 261 EGAKYIGQMKQLTDLSIRENKIGIEGAKSIGQLKNLLNLYISGNEIGDNGAQFI 314
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 77/336 (22%), Positives = 145/336 (43%), Gaps = 30/336 (8%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC-IQISDGGLEHLRGLSNLTSLSFRRN 116
L ++L +++ +G+ +L L L+ + C I ++ L HL L LT L+ N
Sbjct: 32 ELKKLNLEYNNIDPNGIKYLGSLKQLTDLNVSCCYIGLN---LSHLILLKALTHLNITSN 88
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N I A+G K + L KL + N I K +
Sbjct: 89 N-IRAEGAKYIGEMKQLTKLSI-------------------------GSNDIGPEGAKYI 122
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
SGL L L I + + G ++ +++LT LN+ G + +S + L L++
Sbjct: 123 SGLEQLTYLNIRSNDIKKDGAKHISEMKQLTYLNVVGNHICDGGARFISEMKQLSNLSVG 182
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
+ ++G + S++ ++ +L++G N I ++ + + L L + C IG EG +
Sbjct: 183 YNDIGEEGAKYISELMNVSILDIGGNSINEKGAKFIGEMKQLTDLRIYCCNIGVEGTQYI 242
Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
+ L L L +S +G G +++ + L +++ I + + L +L +L +
Sbjct: 243 SSLNQLTHLSISTNNIGDEGAKYIGQMKQLTDLSIRENKIGIEGAKSIGQLKNLLNLYIS 302
Query: 357 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
+I D G ++ + LT LD+ IT G Y+
Sbjct: 303 GNEIGDNGAQFISEMNQLTILDISSINITPIGIKYI 338
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/245 (24%), Positives = 114/245 (46%), Gaps = 25/245 (10%)
Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
+++ L + LK L + + + +GI YL L++LT LN+ C + L L L +L
Sbjct: 23 NLQVLDSMKELKKLNLEYNNIDPNGIKYLGSLKQLTDLNVSCCYI-GLNLSHLILLKALT 81
Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
+LN+ + +G + ++ L L++G N+I E ++ GL L LN+ S I +
Sbjct: 82 HLNITSNNIRAEGAKYIGEMKQLTKLSIGSNDIGPEGAKYISGLEQLTYLNIRSNDIKKD 141
Query: 292 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 351
G +++ + L L + + G R +S + L ++++ + I + + ++ L ++
Sbjct: 142 GAKHISEMKQLTYLNVVGNHICDGGARFISEMKQLSNLSVGYNDIGEEGAKYISELMNVS 201
Query: 352 SLNL--------------DARQITD----------TGLAALTSLTGLTHLDLFGARITDS 387
L++ + +Q+TD G ++SL LTHL + I D
Sbjct: 202 ILDIGGNSINEKGAKFIGEMKQLTDLRIYCCNIGVEGTQYISSLNQLTHLSISTNNIGDE 261
Query: 388 GAAYL 392
GA Y+
Sbjct: 262 GAKYI 266
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/233 (24%), Positives = 113/233 (48%), Gaps = 2/233 (0%)
Query: 94 ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
I G +++ GL LT L+ R N+ I G K + + L L++ GG +
Sbjct: 114 IGPEGAKYISGLEQLTYLNIRSND-IKKDGAKHISEMKQLTYLNVVGNHICDGGARFISE 172
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
+ +L +L++ + N I + K +S L N+ L I + + + G ++ +++LT L +
Sbjct: 173 MKQLSNLSVGY-NDIGEEGAKYISELMNVSILDIGGNSINEKGAKFIGEMKQLTDLRIYC 231
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
C + +S+L L +L+++ + D+G + ++ L L++ N+I E +
Sbjct: 232 CNIGVEGTQYISSLNQLTHLSISTNNIGDEGAKYIGQMKQLTDLSIRENKIGIEGAKSIG 291
Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 326
L NL +L + IGD G ++ + L L++S + G++++S + L
Sbjct: 292 QLKNLLNLYISGNEIGDNGAQFISEMNQLTILDISSINITPIGIKYISNMEYL 344
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 99/214 (46%), Gaps = 1/214 (0%)
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
L N+ +L + + + L +++L LNLE + + L +L L LN++ C
Sbjct: 6 LENIANLAVRMNGEIGFNLQVLDSMKELKKLNLEYNNIDPNGIKYLGSLKQLTDLNVSCC 65
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
+ + + +L LN+ N I E ++ + L L++ S IG EG ++G
Sbjct: 66 YIGLN-LSHLILLKALTHLNITSNNIRAEGAKYIGEMKQLTKLSIGSNDIGPEGAKYISG 124
Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
L L L + + G +H+S + L +N+ I DG R ++ + L +L++
Sbjct: 125 LEQLTYLNIRSNDIKKDGAKHISEMKQLTYLNVVGNHICDGGARFISEMKQLSNLSVGYN 184
Query: 359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
I + G ++ L ++ LD+ G I + GA ++
Sbjct: 185 DIGEEGAKYISELMNVSILDIGGNSINEKGAKFI 218
>gi|428212495|ref|YP_007085639.1| hypothetical protein Oscil6304_2053 [Oscillatoria acuminata PCC
6304]
gi|428000876|gb|AFY81719.1| leucine-rich repeat (LRR) protein [Oscillatoria acuminata PCC 6304]
Length = 455
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 105/328 (32%), Positives = 154/328 (46%), Gaps = 35/328 (10%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
+DLS + + D + +NL +L F + I D +E + L+NLT+L +
Sbjct: 125 LDLSYNKIED-----IASLANLNNLKF---LAIRDNQIEDVAPLTNLTNLEVLWLDENKI 176
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
+ +FA L L +L L +I + L L LESL W N D+ L +T
Sbjct: 177 GEVASFASLTQLTQLHL-SGNQIED-VAPLANLTNLESL---WLNENKIKDVASLVSMTK 231
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
L L +S +++ D +A LKGL ++ L L + L++L +L L LN Q+
Sbjct: 232 LTQLYLSSNEIED--LAPLKGLPEMAELQLNNNQIVNVA--PLASLTNLTTLELNENQIK 287
Query: 242 DDGCEKFSKIGSLKVLNLGFNEITDECLVH---LKGLTNLESLNLDSCGIGDEGLVNLTG 298
D + + SL LGF ++T +V+ L LT LE+L L I D + L
Sbjct: 288 D-----IAPLASLT--QLGFLQLTKNQIVNISPLATLTKLETLQLLYNEIKD--VAPLAS 338
Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
L NL L L + Q+ + L+ LT L S++LS I D + LA L+ L L+L
Sbjct: 339 LTNLTFLTLGENQI--KDVAPLASLTELTSLDLSNNEIKD--IDPLANLTQLTFLHLSDN 394
Query: 359 QITDTGLAALTSLTGLTHLDLFGARITD 386
QI D +A L SLT L HL L I D
Sbjct: 395 QIKD--VAPLASLTQLKHLHLRNNEIKD 420
Score = 77.8 bits (190), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 100/306 (32%), Positives = 142/306 (46%), Gaps = 44/306 (14%)
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
L GL+NL L N + + AGL NL LDL +I + +L L L+ L
Sbjct: 94 LAGLTNLEWLELSYNKI---EDIAPLAGLTNLEWLDL-SYNKIE-DIASLANLNNLKFLA 148
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT-AAC 220
I+ N I D+ PL+ LTNL+ L + +K+ + +A L +LT L+L G + A
Sbjct: 149 IR-DNQI--EDVAPLTNLTNLEVLWLDENKIGE--VASFASLTQLTQLHLSGNQIEDVAP 203
Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 280
L +L+ L SL +LN N+ + + L L L NEI D L LKGL +
Sbjct: 204 LANLTNLESL-WLNENKIK----DVASLVSMTKLTQLYLSSNEIED--LAPLKGLPEMAE 256
Query: 281 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG--------------------LRHL 320
L L++ I + + L L NL LEL++ Q+ + L
Sbjct: 257 LQLNNNQIVN--VAPLASLTNLTTLELNENQIKDIAPLASLTQLGFLQLTKNQIVNISPL 314
Query: 321 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 380
+ LT LE++ L + I D + LA L++L L L QI D +A L SLT LT LDL
Sbjct: 315 ATLTKLETLQLLYNEIKD--VAPLASLTNLTFLTLGENQIKD--VAPLASLTELTSLDLS 370
Query: 381 GARITD 386
I D
Sbjct: 371 NNEIKD 376
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 72/215 (33%), Positives = 109/215 (50%), Gaps = 16/215 (7%)
Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
D+ PL+GLTNL+ L++S +K+ D IA L GL L L+L + SL+ L +L
Sbjct: 90 DIAPLAGLTNLEWLELSYNKIED--IAPLAGLTNLEWLDLSYNKIEDIA--SLANLNNLK 145
Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
+L + Q+ D + + +L+VL L N+I + + LT L L+L I D
Sbjct: 146 FLAIRDNQIED--VAPLTNLTNLEVLWLDENKIGE--VASFASLTQLTQLHLSGNQIED- 200
Query: 292 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 351
+ L L NL+ L L++ ++ + L +T L + LS I D L L GL +
Sbjct: 201 -VAPLANLTNLESLWLNENKI--KDVASLVSMTKLTQLYLSSNEIED--LAPLKGLPEMA 255
Query: 352 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
L L+ QI + +A L SLT LT L+L +I D
Sbjct: 256 ELQLNNNQIVN--VAPLASLTNLTTLELNENQIKD 288
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 94/344 (27%), Positives = 149/344 (43%), Gaps = 61/344 (17%)
Query: 27 AFRDCALQDLC-LGQYPGVNDKWMDV-----IASQGS--SLLSVDLSGSDVTDSGLIHLK 78
A RD ++D+ L + W+D +AS S L + LSG+ + D L
Sbjct: 148 AIRDNQIEDVAPLTNLTNLEVLWLDENKIGEVASFASLTQLTQLHLSGNQIEDVA--PLA 205
Query: 79 DCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL 138
+ +NL+SL N +I D L ++ LT L N + + GL + +L L
Sbjct: 206 NLTNLESLWLNEN-KIKDVA--SLVSMTKLTQLYLSSNEI---EDLAPLKGLPEMAELQL 259
Query: 139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGI 197
+ +VN+ L L +L N D+ PL+ LT L LQ++ +++ + S +
Sbjct: 260 N-----NNQIVNVAPLASLTNLTTLELNENQIKDIAPLASLTQLGFLQLTKNQIVNISPL 314
Query: 198 AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 257
A L L+ L LL E + ++ L SL +L L
Sbjct: 315 ATLTKLETLQLLYNE--------IKDVAPLASL---------------------TNLTFL 345
Query: 258 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSG 316
LG N+I D + L LT L SL+L + I D + L NLT L L LSD Q+
Sbjct: 346 TLGENQIKD--VAPLASLTELTSLDLSNNEIKDIDPLANLTQLT---FLHLSDNQI--KD 398
Query: 317 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
+ L+ LT L+ ++L I D + +L L+ + + ++D I
Sbjct: 399 VAPLASLTQLKHLHLRNNEIKD--IARLPNLTQMDNFSVDGNPI 440
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 74/151 (49%), Gaps = 19/151 (12%)
Query: 242 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN 301
D E SK+ L + +EI D + L GLTNLE L L I D + L GL N
Sbjct: 69 DRAQESLSKMTELGIRG---DEIKD--IAPLAGLTNLEWLELSYNKIED--IAPLAGLTN 121
Query: 302 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN---LDAR 358
L+ L+LS ++ ++ L NL NL F I D + +A L++L +L LD
Sbjct: 122 LEWLDLSYNKI-----EDIASLANLN--NLKFLAIRDNQIEDVAPLTNLTNLEVLWLDEN 174
Query: 359 QITDTGLAALTSLTGLTHLDLFGARITDSGA 389
+I + +A+ SLT LT L L G +I D
Sbjct: 175 KIGE--VASFASLTQLTQLHLSGNQIEDVAP 203
>gi|390335362|ref|XP_003724129.1| PREDICTED: uncharacterized protein LOC100890653 [Strongylocentrotus
purpuratus]
Length = 990
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 107/419 (25%), Positives = 177/419 (42%), Gaps = 78/419 (18%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
+P +++++ EL S L +L F C LQ L L Y ++ + +
Sbjct: 589 VPPTVAERLLTELKKSGHLRPKTLMMFIPCHLQRLALDCYKYTTNELLQTVRPH------ 642
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
IHL SL+ C I+D GL + L L L+ N ++T
Sbjct: 643 -------------IHLS------SLNLASCPLITDQGLLQITSLKKLQHLNLSNNKSLTD 683
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
+ + +L L LE GL + P LTN
Sbjct: 684 KVFQTVQEFSSLTTLLLEGTGVTDAGLETFVAV--------------------PPPNLTN 723
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
L ++ + VTD + +L L KL L LE V + L+ + L L LN++R +L
Sbjct: 724 LS---LNRTNVTDMAVLFLARLSKLKNLGLEQTQVKS--LEHVGHLSQLVSLNVSRNRLQ 778
Query: 242 DDGCEKFSKIGSLKVLNLGFNE-IT-DECLVHLKGLTNLE-------------------- 279
D K ++ LKVL++ E IT DE L L+GL ++
Sbjct: 779 RDALLKLHQVTHLKVLHISHVEGITGDEALTCLQGLQLMQLSLPDRHTTTDNGLKCIAGM 838
Query: 280 ---SLNL-DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 335
S++L D I D G+ +L + +L L +++T+V S+G+++LSGLT L ++L T
Sbjct: 839 SLCSIDLTDYSNITDAGIHHLADMTSLHKLSITNTKVTSAGMQYLSGLTELLELHLDRTL 898
Query: 336 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAA--LTSLTGLTHLDLFGARITDSGAAYL 392
+ D + + L+ L+ L++ +ITD L + + S ++ L+L I++ G L
Sbjct: 899 VDDEGAKVIGQLTKLQVLSMAETKITDRFLLSNVINSCPHISRLNLSRTNISERGITVL 957
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 81/285 (28%), Positives = 143/285 (50%), Gaps = 13/285 (4%)
Query: 43 GVNDKWMDV-IASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEH 101
GV D ++ +A +L ++ L+ ++VTD ++ L S L++L Q LEH
Sbjct: 704 GVTDAGLETFVAVPPPNLTNLSLNRTNVTDMAVLFLARLSKLKNLGLE---QTQVKSLEH 760
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG--GLVNLKGLMKLES 159
+ LS L SL+ RN + + + +L L + I G L L+GL +L
Sbjct: 761 VGHLSQLVSLNVSRNR-LQRDALLKLHQVTHLKVLHISHVEGITGDEALTCLQGL-QLMQ 818
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
L++ + TD+ +K ++G++ L S+ ++ S +TD+GI +L + L L++ VT+
Sbjct: 819 LSLPDRHTTTDNGLKCIAGMS-LCSIDLTDYSNITDAGIHHLADMTSLHKLSITNTKVTS 877
Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH--LKGLT 276
A + LS L L L+L+R + D+G + ++ L+VL++ +ITD L+ +
Sbjct: 878 AGMQYLSGLTELLELHLDRTLVDDEGAKVIGQLTKLQVLSMAETKITDRFLLSNVINSCP 937
Query: 277 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 321
++ LNL I + G+ L+ L L L L T V +HL+
Sbjct: 938 HISRLNLSRTNISERGITVLS-LPYLTLLNLDYTCVSVDCAQHLT 981
>gi|48096980|ref|XP_393659.1| PREDICTED: f-box/LRR-repeat protein 14 [Apis mellifera]
gi|380017700|ref|XP_003692785.1| PREDICTED: F-box/LRR-repeat protein 14-like [Apis florea]
Length = 481
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 101/321 (31%), Positives = 171/321 (53%), Gaps = 44/321 (13%)
Query: 57 SSLLSVDLSG-SDVTDSGLIHL--KDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLS 112
+L +++LSG ++TD+GLI+ ++ + L L+ + C Q+SD L + + L NL L
Sbjct: 177 PNLEALNLSGCYNITDAGLINAFCQEYTTLTELNLSLCKQVSDISLGRIVQYLKNLEHLE 236
Query: 113 FRRNNAITAQGMKAFA-GLINLVKLDLERCTRIHG-GLVNLKGL--------MKLESLNI 162
IT G+ A L L +LDL C ++ G+ +L G+ + LE L++
Sbjct: 237 LGGCCNITNGGLLCIAWNLKKLKRLDLRSCWQVSDLGIAHLAGVNREAAGGNLALEHLSL 296
Query: 163 KWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 220
+ C ++D ++ +S GLT LKS+ +S C +TDSG+ +L + L LNL C
Sbjct: 297 QDCQRLSDEALRHVSIGLTTLKSINLSFCVCITDSGLKHLAKMSSLRELNLRSC------ 350
Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHL-KGLTNL 278
D++S +G + L++ G S+I SL V F ++I D+ LVH+ +GL NL
Sbjct: 351 -DNVSDIGMAY--------LAEGG----SRISSLDV---SFCDKIGDQALVHISQGLFNL 394
Query: 279 ESLNLDSCGIGDEGLVNLTG-LCNLKCLELSD-TQVGSSGLRHLS-GLTNLESINL-SFT 334
+ L+L +C I DEG+ + L +L+ L + +++ GL ++ + +L+ I+L T
Sbjct: 395 KLLSLSACQISDEGICKIAKTLHDLETLNIGQCSRLTDKGLYTIAESMKHLKCIDLYGCT 454
Query: 335 GISDGSLRKLAGLSSLKSLNL 355
IS L ++ L L +LNL
Sbjct: 455 RISTNGLERIMKLPQLSTLNL 475
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 120/247 (48%), Gaps = 39/247 (15%)
Query: 28 FRDC-ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSD---VTDSGLIHLK-DCSN 82
R C + DL + GVN + + G +L LS D ++D L H+ +
Sbjct: 263 LRSCWQVSDLGIAHLAGVNRE------AAGGNLALEHLSLQDCQRLSDEALRHVSIGLTT 316
Query: 83 LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT 142
L+S++ +FC+ I+D GL+HL +S+L L+ R + ++ GM A
Sbjct: 317 LKSINLSFCVCITDSGLKHLAKMSSLRELNLRSCDNVSDIGMAYLA-------------- 362
Query: 143 RIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKSLQISCSKVTDSGIAYL- 200
+G ++ SL++ +C+ I D + +S GL NLK L +S +++D GI +
Sbjct: 363 ---------EGGSRISSLDVSFCDKIGDQALVHISQGLFNLKLLSLSACQISDEGICKIA 413
Query: 201 KGLQKLTLLNLEGCP-VTAACLDSLS-ALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVL 257
K L L LN+ C +T L +++ ++ L ++L C ++S +G E+ K+ L L
Sbjct: 414 KTLHDLETLNIGQCSRLTDKGLYTIAESMKHLKCIDLYGCTRISTNGLERIMKLPQLSTL 473
Query: 258 NLGFNEI 264
NLG +
Sbjct: 474 NLGLWHV 480
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 69/210 (32%), Positives = 103/210 (49%), Gaps = 38/210 (18%)
Query: 200 LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 259
LKG+ L LNL GC N+ L + C++++ +L LNL
Sbjct: 173 LKGVPNLEALNLSGC------------------YNITDAGLINAFCQEYT---TLTELNL 211
Query: 260 GF-NEITDECLVHL-KGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLEL-SDTQVGS 314
+++D L + + L NLE L L C I + GL+ + L LK L+L S QV
Sbjct: 212 SLCKQVSDISLGRIVQYLKNLEHLELGGCCNITNGGLLCIAWNLKKLKRLDLRSCWQVSD 271
Query: 315 SGLRHLSGLT------NLESINLSFTG---ISDGSLRKLA-GLSSLKSLNLD-ARQITDT 363
G+ HL+G+ NL +LS +SD +LR ++ GL++LKS+NL ITD+
Sbjct: 272 LGIAHLAGVNREAAGGNLALEHLSLQDCQRLSDEALRHVSIGLTTLKSINLSFCVCITDS 331
Query: 364 GLAALTSLTGLTHLDLFGA-RITDSGAAYL 392
GL L ++ L L+L ++D G AYL
Sbjct: 332 GLKHLAKMSSLRELNLRSCDNVSDIGMAYL 361
>gi|148228501|ref|NP_001083845.1| F-box and leucine-rich repeat protein 14 [Xenopus laevis]
gi|50603939|gb|AAH77430.1| Fbl13 protein [Xenopus laevis]
Length = 400
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 97/311 (31%), Positives = 166/311 (53%), Gaps = 32/311 (10%)
Query: 81 SNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-LVKLD 137
N++SL+ + C ++D GL H ++ + +L +L+ +T + A + L L+
Sbjct: 90 PNIESLNLSGCYNLTDNGLGHAFVQEIGSLRTLNLSLCKQVTDSSLGRIAQYLKGLQVLE 149
Query: 138 LERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT--------NLKSLQI 187
L CT I G L+ GL L+SLN++ C ++D + L+G+T +L+ L +
Sbjct: 150 LGGCTNITNTGLLLIAWGLHGLKSLNLRSCRHVSDVGIGHLAGMTRSAAEGCLSLEQLTL 209
Query: 188 S-CSKVTDSGIAYL-KGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDD 243
C K+TD + ++ +GLQ L +LNL C ++ A L LS +G L LNL C +SD
Sbjct: 210 QDCQKLTDLALKHISRGLQGLRVLNLSFCGGISDAGLLHLSHMGGLRSLNLRSCDNISDT 269
Query: 244 GCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGL----VN 295
G + +GSL++ L++ F +++ D+ L ++ +GL L+SL+L SC I D+G+
Sbjct: 270 GIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLYGLKSLSLCSCHISDDGINRMVRQ 328
Query: 296 LTGLCNL---KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
+ GL L +C+ ++D + HLS LT ++ T I+ L ++ L LK
Sbjct: 329 MHGLRTLNIGQCVRITDKGLELIA-EHLSQLTGIDLYGC--TRITKKGLERITQLPCLKV 385
Query: 353 LNLDARQITDT 363
LNL Q+T++
Sbjct: 386 LNLGLWQMTES 396
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 97/288 (33%), Positives = 146/288 (50%), Gaps = 50/288 (17%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKP--LSGLTNLKSLQIS-CSKVTDSGIA----YLKGL 203
++GL +ESLN+ C +TD+ + + + +L++L +S C +VTDS + YLKGL
Sbjct: 86 IQGLPNIESLNLSGCYNLTDNGLGHAFVQEIGSLRTLNLSLCKQVTDSSLGRIAQYLKGL 145
Query: 204 QKLTL-----------------------LNLEGCPVTA-------ACLDSLSALG--SLF 231
Q L L LNL C + A + +A G SL
Sbjct: 146 QVLELGGCTNITNTGLLLIAWGLHGLKSLNLRSCRHVSDVGIGHLAGMTRSAAEGCLSLE 205
Query: 232 YLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-G 287
L L CQ L+D + S+ + L+VLNL F I+D L+HL + L SLNL SC
Sbjct: 206 QLTLQDCQKLTDLALKHISRGLQGLRVLNLSFCGGISDAGLLHLSHMGGLRSLNLRSCDN 265
Query: 288 IGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRHLS-GLTNLESINLSFTGISDGSL-RK 343
I D G+++L G L L++S +VG L +++ GL L+S++L ISD + R
Sbjct: 266 ISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLYGLKSLSLCSCHISDDGINRM 325
Query: 344 LAGLSSLKSLNL-DARQITDTGLAALTS-LTGLTHLDLFG-ARITDSG 388
+ + L++LN+ +ITD GL + L+ LT +DL+G RIT G
Sbjct: 326 VRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKKG 373
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 83/286 (29%), Positives = 142/286 (49%), Gaps = 33/286 (11%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEH 101
V D + IA L ++L G +++T++GL+ + L+SL+ C +SD G+ H
Sbjct: 130 VTDSSLGRIAQYLKGLQVLELGGCTNITNTGLLLIAWGLHGLKSLNLRSCRHVSDVGIGH 189
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNL-KGLMKLES 159
L G++ A G ++L +L L+ C ++ L ++ +GL L
Sbjct: 190 LAGMTR-----------------SAAEGCLSLEQLTLQDCQKLTDLALKHISRGLQGLRV 232
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK-GLQKLTLLNLEGCPVT 217
LN+ +C I+D+ + LS + L+SL + SC ++D+GI +L G +L+ L++ C
Sbjct: 233 LNLSFCGGISDAGLLHLSHMGGLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKV 292
Query: 218 AACLDSLSALGSLFY----LNLNRCQLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVH 271
SL+ + Y L+L C +SDDG + + + L+ LN+G ITD+ L
Sbjct: 293 GD--QSLAYIAQGLYGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLEL 350
Query: 272 L-KGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQVGSS 315
+ + L+ L ++L C I +GL +T L LK L L Q+ S
Sbjct: 351 IAEHLSQLTGIDLYGCTRITKKGLERITQLPCLKVLNLGLWQMTES 396
>gi|290991638|ref|XP_002678442.1| leucine rich repeat domain-containing protein [Naegleria gruberi]
gi|284092054|gb|EFC45698.1| leucine rich repeat domain-containing protein [Naegleria gruberi]
Length = 646
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 103/343 (30%), Positives = 165/343 (48%), Gaps = 38/343 (11%)
Query: 64 LSGSDVTD-SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLS-NLTSLSFRRNNAITA 121
L+ S VT +GL L+ S+ +S+ C +++G L+ L L +L SL+ NN I +
Sbjct: 256 LTSSAVTSLTGLTSLEMVSSHRSIGSKGCKYLANGKLKCLTSLDVSLESLNETNNNGIKS 315
Query: 122 QGMKAFAG--LINLVKLDL-------ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 172
G K A L +L++L+L + C + G GL+ L LN+ C D+
Sbjct: 316 NGCKYLANGNLNHLIQLNLSGNRIYSKGCQYLSNG-----GLLTLTHLNLSCCALDFDAC 370
Query: 173 MKPLSG-LTNLKSLQISCSKVTDSGIAYL--KGLQKLTLLNLEGCPVTAA--CLDSLSAL 227
+G L NL L +S + + SGI ++ + LT L+LE C V + + +
Sbjct: 371 QYLGNGNLKNLVQLNLSKNMLIGSGIQFIFNGNMPNLTWLSLESCEVRPSDCAFIGNADV 430
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL----------GFNEITDECLVHLKGLTN 277
SL YLN++ +SD+GC+ +K L + +L GF E+T G+
Sbjct: 431 SSLVYLNISNNPISDEGCKNLAKAQFLSLQDLYLRDCQIGSSGFAELT------ANGIGK 484
Query: 278 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 337
L L +D+ IGDEG +N++ L L L +S+ +GS G R +S L L+ + +S +
Sbjct: 485 LTKLYVDNNNIGDEGCLNISSLPFLNLLSVSNNNLGSKGCRCISLLPQLQHLTISRNNVG 544
Query: 338 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 380
L LS L+ L+L I D G L + LT++ +F
Sbjct: 545 SSGCLYLNALSKLEYLDLVGNDIRDAGCEILCN-GSLTNVRVF 586
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 89/324 (27%), Positives = 141/324 (43%), Gaps = 39/324 (12%)
Query: 89 NFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGL 148
+ C ++ + L GL++L +S R +I ++G K A +G L
Sbjct: 251 HLCEYLTSSAVTSLTGLTSLEMVSSHR--SIGSKGCKYLA----------------NGKL 292
Query: 149 VNLKGL-MKLESLNIKWCNCITDSDMKPLSG--LTNLKSLQISCSKVTDSGIAYLK--GL 203
L L + LESLN N I + K L+ L +L L +S +++ G YL GL
Sbjct: 293 KCLTSLDVSLESLNETNNNGIKSNGCKYLANGNLNHLIQLNLSGNRIYSKGCQYLSNGGL 352
Query: 204 QKLTLLNLEGCPVTAACLDSLSALGS-----LFYLNLNRCQLSDDGCEKF--SKIGSLKV 256
LT LNL C A D+ LG+ L LNL++ L G + + +L
Sbjct: 353 LTLTHLNLSCC---ALDFDACQYLGNGNLKNLVQLNLSKNMLIGSGIQFIFNGNMPNLTW 409
Query: 257 LNLGFNEI--TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG--LCNLKCLELSDTQV 312
L+L E+ +D + +++L LN+ + I DEG NL +L+ L L D Q+
Sbjct: 410 LSLESCEVRPSDCAFIGNADVSSLVYLNISNNPISDEGCKNLAKAQFLSLQDLYLRDCQI 469
Query: 313 GSSGLRHLS--GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 370
GSSG L+ G+ L + + I D ++ L L L++ + G ++
Sbjct: 470 GSSGFAELTANGIGKLTKLYVDNNNIGDEGCLNISSLPFLNLLSVSNNNLGSKGCRCISL 529
Query: 371 LTGLTHLDLFGARITDSGAAYLRS 394
L L HL + + SG YL +
Sbjct: 530 LPQLQHLTISRNNVGSSGCLYLNA 553
>gi|126340111|ref|XP_001366661.1| PREDICTED: f-box/LRR-repeat protein 14-like [Monodelphis domestica]
Length = 400
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 98/315 (31%), Positives = 169/315 (53%), Gaps = 32/315 (10%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
++ +N++SL+ + C ++D GL H ++ + +L +L+ IT + A + L
Sbjct: 86 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 145
Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LK 183
L+L C+ I G L+ GL +L+SLN++ C ++D + L+G+T L+
Sbjct: 146 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLE 205
Query: 184 SLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-Q 239
L + C K+TD + ++ +GL L LLNL C ++ A L LS +GSL LNL C
Sbjct: 206 QLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDN 265
Query: 240 LSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGL-- 293
+SD G + +GSL++ L++ F +++ D+ L ++ +GL L+SL+L SC I D+G+
Sbjct: 266 ISDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINR 324
Query: 294 --VNLTGLCNL---KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 348
+ GL L +C+ ++D + HLS LT ++ T I+ L ++ L
Sbjct: 325 MVRQMHGLRTLNIGQCVRITDKGLELIA-EHLSQLTGIDLYGC--TRITKRGLERITQLP 381
Query: 349 SLKSLNLDARQITDT 363
LK LNL Q+T++
Sbjct: 382 CLKVLNLGLWQMTES 396
Score = 74.3 bits (181), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 95/302 (31%), Positives = 152/302 (50%), Gaps = 38/302 (12%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + G ++ + L +
Sbjct: 68 RGIRRVQILSLRRSLSYVIQGMA------NIESLNLSGCYNLTDNGLGHAFVQEIGSLRA 121
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LN+ C ITDS + ++ LK L++ CS +T++G+ + GLQ+L LNL C
Sbjct: 122 LNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSC 179
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL-K 273
LS +G + R + +GC +G ++ ++TD L H+ +
Sbjct: 180 R-------HLSDVGIGHLAGMTRS--AAEGC-----LGLEQLTLQDCQKLTDLSLKHISR 225
Query: 274 GLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLEL-SDTQVGSSGLRHLS-GLTNLESIN 330
GLT L LNL CG I D GL++L+ + +L+ L L S + +G+ HL+ G L ++
Sbjct: 226 GLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLD 285
Query: 331 LSFT-GISDGSLRKLA-GLSSLKSLNLDARQITDTGLAALT-SLTGLTHLDLFG-ARITD 386
+SF + D SL +A GL LKSL+L + I+D G+ + + GL L++ RITD
Sbjct: 286 VSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITD 345
Query: 387 SG 388
G
Sbjct: 346 KG 347
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 103/204 (50%), Gaps = 29/204 (14%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ + + L+ L+ +FC ISD GL HL + +L SL+ R + I+ G+
Sbjct: 215 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 274
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C ++ + +GL L+SL++ C+ D + + + L++
Sbjct: 275 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 334
Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
L I C ++TD G+ + + L +LT ++L GC +++
Sbjct: 335 LNIGQCVRITDKGLELIAEHLSQLTGIDLYGCT-----------------------RITK 371
Query: 243 DGCEKFSKIGSLKVLNLGFNEITD 266
G E+ +++ LKVLNLG ++T+
Sbjct: 372 RGLERITQLPCLKVLNLGLWQMTE 395
>gi|320165522|gb|EFW42421.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 743
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 85/294 (28%), Positives = 132/294 (44%), Gaps = 5/294 (1%)
Query: 86 LDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH 145
L++N QI+ + GL+ L L F N IT+ AFA L++LDL
Sbjct: 113 LNYN---QITSFPADTFIGLTFLREL-FLNYNQITSIPTSAFASQTALIQLDLRSNLITS 168
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK 205
GL L++L + + N T +GLT L L + +++ GL
Sbjct: 169 FPADTFIGLTMLKNLYMDF-NQFTSIPANTFTGLTALTFLSLHTNQIASIPANTFTGLTA 227
Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265
LT L+L +T +D+ + L +L +L+L +++ FS + +L++LNL N+IT
Sbjct: 228 LTFLDLTNNQITNTSVDAFTGLTALTHLDLTDNRITTISASTFSGLTALRLLNLNGNQIT 287
Query: 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 325
GLT L L L + I GL L + L++ + S + LT
Sbjct: 288 TISANTFSGLTTLNYLFLTTNQISSISTSAFAGLTVLTEMSLNNNSITSISANTFAVLTA 347
Query: 326 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
L ++LS I+ A L++L +L+L+ QIT A TSLT L L L
Sbjct: 348 LTILDLSDNQITSIPADAFASLTALDTLSLNDNQITSIPANAFTSLTTLHRLPL 401
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 79/277 (28%), Positives = 123/277 (44%), Gaps = 1/277 (0%)
Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 172
+ NN+IT AFAGL L +L+L+ GL L L + + N IT
Sbjct: 64 YLNNNSITIISASAFAGLTALTRLELKTNQITSFPADTFIGLTFLRELFLNY-NQITSFP 122
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
GLT L+ L ++ +++T + L L+L +T+ D+ L L
Sbjct: 123 ADTFIGLTFLRELFLNYNQITSIPTSAFASQTALIQLDLRSNLITSFPADTFIGLTMLKN 182
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
L ++ Q + F+ + +L L+L N+I GLT L L+L + I +
Sbjct: 183 LYMDFNQFTSIPANTFTGLTALTFLSLHTNQIASIPANTFTGLTALTFLDLTNNQITNTS 242
Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
+ TGL L L+L+D ++ + SGLT L +NL+ I+ S +GL++L
Sbjct: 243 VDAFTGLTALTHLDLTDNRITTISASTFSGLTALRLLNLNGNQITTISANTFSGLTTLNY 302
Query: 353 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 389
L L QI+ +A LT LT + L IT A
Sbjct: 303 LFLTTNQISSISTSAFAGLTVLTEMSLNNNSITSISA 339
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 69/249 (27%), Positives = 112/249 (44%), Gaps = 5/249 (2%)
Query: 115 RNNAITAQGMKAFAGLINL--VKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 172
R+N IT+ F GL L + +D + T I GL L L++ N I
Sbjct: 162 RSNLITSFPADTFIGLTMLKNLYMDFNQFTSIPAN--TFTGLTALTFLSLH-TNQIASIP 218
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
+GLT L L ++ +++T++ + GL LT L+L +T + S L +L
Sbjct: 219 ANTFTGLTALTFLDLTNNQITNTSVDAFTGLTALTHLDLTDNRITTISASTFSGLTALRL 278
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
LNLN Q++ FS + +L L L N+I+ GLT L ++L++ I
Sbjct: 279 LNLNGNQITTISANTFSGLTTLNYLFLTTNQISSISTSAFAGLTVLTEMSLNNNSITSIS 338
Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
L L L+LSD Q+ S + LT L++++L+ I+ L++L
Sbjct: 339 ANTFAVLTALTILDLSDNQITSIPADAFASLTALDTLSLNDNQITSIPANAFTSLTTLHR 398
Query: 353 LNLDARQIT 361
L L+ +T
Sbjct: 399 LPLENNPLT 407
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 86/191 (45%)
Query: 200 LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 259
GL LT L L+ +T+ D+ L L L LN Q++ + F + L+ L L
Sbjct: 78 FAGLTALTRLELKTNQITSFPADTFIGLTFLRELFLNYNQITSFPADTFIGLTFLRELFL 137
Query: 260 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 319
+N+IT T L L+L S I GL LK L + Q S
Sbjct: 138 NYNQITSIPTSAFASQTALIQLDLRSNLITSFPADTFIGLTMLKNLYMDFNQFTSIPANT 197
Query: 320 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
+GLT L ++L I+ GL++L L+L QIT+T + A T LT LTHLDL
Sbjct: 198 FTGLTALTFLSLHTNQIASIPANTFTGLTALTFLDLTNNQITNTSVDAFTGLTALTHLDL 257
Query: 380 FGARITDSGAA 390
RIT A+
Sbjct: 258 TDNRITTISAS 268
Score = 39.7 bits (91), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 64/157 (40%)
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
G+ L LN ++ F+ + +L L L N+IT GLT L L L+
Sbjct: 58 GTTTQLYLNNNSITIISASAFAGLTALTRLELKTNQITSFPADTFIGLTFLRELFLNYNQ 117
Query: 288 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 347
I GL L+ L L+ Q+ S + T L ++L I+ GL
Sbjct: 118 ITSFPADTFIGLTFLRELFLNYNQITSIPTSAFASQTALIQLDLRSNLITSFPADTFIGL 177
Query: 348 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 384
+ LK+L +D Q T T LT LT L L +I
Sbjct: 178 TMLKNLYMDFNQFTSIPANTFTGLTALTFLSLHTNQI 214
>gi|397499401|ref|XP_003820442.1| PREDICTED: F-box/LRR-repeat protein 14 [Pan paniscus]
Length = 561
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 101/319 (31%), Positives = 170/319 (53%), Gaps = 40/319 (12%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
++ +N++SL+ + C ++D GL H ++ + +L +L+ IT + A + L
Sbjct: 246 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 305
Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LK 183
L+L C+ I G L+ GL +L+SLN++ C ++D + L+G+T L+
Sbjct: 306 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLE 365
Query: 184 SLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-Q 239
L + C K+TD + ++ +GL L LLNL C ++ A L LS +GSL LNL C
Sbjct: 366 QLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDN 425
Query: 240 LSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGL-- 293
+SD G + +GSL++ L++ F +++ D+ L ++ +GL L+SL+L SC I D+G+
Sbjct: 426 ISDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINR 484
Query: 294 --VNLTGLCNL---KCLELSDTQVGSSGL----RHLSGLTNLESINLSFTGISDGSLRKL 344
+ GL L +C+ ++D GL HLS LT ++ T I+ L ++
Sbjct: 485 MVRQMHGLRTLNIGQCVRITD-----KGLELIAEHLSQLTGIDLYGC--TRITKRGLERI 537
Query: 345 AGLSSLKSLNLDARQITDT 363
L LK LNL Q+TD+
Sbjct: 538 TQLPCLKVLNLGLWQMTDS 556
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 95/302 (31%), Positives = 152/302 (50%), Gaps = 38/302 (12%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + G ++ + L +
Sbjct: 228 RGIRRVQILSLRRSLSYVIQGM------ANIESLNLSGCYNLTDNGLGHAFVQEIGSLRA 281
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LN+ C ITDS + ++ LK L++ CS +T++G+ + GLQ+L LNL C
Sbjct: 282 LNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSC 339
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL-K 273
LS +G + R + +GC +G ++ ++TD L H+ +
Sbjct: 340 -------RHLSDVGIGHLAGMTRS--AAEGC-----LGLEQLTLQDCQKLTDLSLKHISR 385
Query: 274 GLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLEL-SDTQVGSSGLRHLS-GLTNLESIN 330
GLT L LNL CG I D GL++L+ + +L+ L L S + +G+ HL+ G L ++
Sbjct: 386 GLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLD 445
Query: 331 LSF-TGISDGSLRKLA-GLSSLKSLNLDARQITDTGLAALT-SLTGLTHLDLFG-ARITD 386
+SF + D SL +A GL LKSL+L + I+D G+ + + GL L++ RITD
Sbjct: 446 VSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITD 505
Query: 387 SG 388
G
Sbjct: 506 KG 507
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 103/204 (50%), Gaps = 29/204 (14%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ + + L+ L+ +FC ISD GL HL + +L SL+ R + I+ G+
Sbjct: 375 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 434
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C ++ + +GL L+SL++ C+ D + + + L++
Sbjct: 435 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 494
Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
L I C ++TD G+ + + L +LT ++L GC +++
Sbjct: 495 LNIGQCVRITDKGLELIAEHLSQLTGIDLYGC-----------------------TRITK 531
Query: 243 DGCEKFSKIGSLKVLNLGFNEITD 266
G E+ +++ LKVLNLG ++TD
Sbjct: 532 RGLERITQLPCLKVLNLGLWQMTD 555
>gi|290984930|ref|XP_002675179.1| predicted protein [Naegleria gruberi]
gi|284088774|gb|EFC42435.1| predicted protein [Naegleria gruberi]
Length = 330
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/289 (23%), Positives = 137/289 (47%), Gaps = 6/289 (2%)
Query: 95 SDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGL 154
SDG + + +LT L R NN I +G ++ ++ L +L + G ++ L
Sbjct: 43 SDGNFQVFEMMKHLTHLDIR-NNGIGYEGAQSIGKVMQLTRLCIAGNNIGEKGAKSISQL 101
Query: 155 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 214
+L +L++ + N + D K +S L+ L L I +++TD G +L L++L LN+
Sbjct: 102 TQLTTLDVSF-NQLCDYGTKFISQLSRLTDLNIRGNRITDKGAIFLSDLKELRFLNISSN 160
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI----TDECLV 270
+ + SL+ L L L+++ + + S++ L LNL +N+ +
Sbjct: 161 TILLEGIKSLTNLKQLTQLDISYNNILPSYAQTISEMDQLTNLNLSYNDYGWGSDSNGVR 220
Query: 271 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 330
++ + NL++L I + + L CL + + +GSS + +S + L ++
Sbjct: 221 YICEMKNLKTLTFGGICIRQYIFNYIKEMKQLACLNIRSSYIGSSSAKLISSMNQLTELD 280
Query: 331 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
+S+ I D + ++ + L SLN++ +I G L + LT+L++
Sbjct: 281 ISYNEIGDVGAKHISEMDQLTSLNVEGCRINSEGTEYLKQMKQLTYLNI 329
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 66/249 (26%), Positives = 118/249 (47%), Gaps = 7/249 (2%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
++G+++ + G + + L +LD +F Q+ D G + + LS LT L+ R N IT +G
Sbjct: 85 IAGNNIGEKGAKSISQLTQLTTLDVSFN-QLCDYGTKFISQLSRLTDLNIR-GNRITDKG 142
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
+ L L L++ T + G+ +L L +L L+I + N I S + +S + L
Sbjct: 143 AIFLSDLKELRFLNISSNTILLEGIKSLTNLKQLTQLDISYNN-ILPSYAQTISEMDQLT 201
Query: 184 SLQISCSKV---TDS-GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 239
+L +S + +DS G+ Y+ ++ L L G + + + + L LN+
Sbjct: 202 NLNLSYNDYGWGSDSNGVRYICEMKNLKTLTFGGICIRQYIFNYIKEMKQLACLNIRSSY 261
Query: 240 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 299
+ + S + L L++ +NEI D H+ + L SLN++ C I EG L +
Sbjct: 262 IGSSSAKLISSMNQLTELDISYNEIGDVGAKHISEMDQLTSLNVEGCRINSEGTEYLKQM 321
Query: 300 CNLKCLELS 308
L L +S
Sbjct: 322 KQLTYLNIS 330
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 64/252 (25%), Positives = 112/252 (44%), Gaps = 28/252 (11%)
Query: 169 TDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG 228
+D + + + +L L I + + G + + +LT L + G + S+S L
Sbjct: 43 SDGNFQVFEMMKHLTHLDIRNNGIGYEGAQSIGKVMQLTRLCIAGNNIGEKGAKSISQLT 102
Query: 229 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 288
L L+++ QL D G + S++ L LN+ N ITD+ + L L L LN+ S I
Sbjct: 103 QLTTLDVSFNQLCDYGTKFISQLSRLTDLNIRGNRITDKGAIFLSDLKELRFLNISSNTI 162
Query: 289 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS----LRKL 344
EG+ +LT L L L++S + S + +S + L ++NLS+ GS +R +
Sbjct: 163 LLEGIKSLTNLKQLTQLDISYNNILPSYAQTISEMDQLTNLNLSYNDYGWGSDSNGVRYI 222
Query: 345 AGLSSLKS------------------------LNLDARQITDTGLAALTSLTGLTHLDLF 380
+ +LK+ LN+ + I + ++S+ LT LD+
Sbjct: 223 CEMKNLKTLTFGGICIRQYIFNYIKEMKQLACLNIRSSYIGSSSAKLISSMNQLTELDIS 282
Query: 381 GARITDSGAAYL 392
I D GA ++
Sbjct: 283 YNEIGDVGAKHI 294
>gi|383852952|ref|XP_003701989.1| PREDICTED: F-box/LRR-repeat protein 14-like [Megachile rotundata]
Length = 479
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 79/274 (28%), Positives = 140/274 (51%), Gaps = 50/274 (18%)
Query: 68 DVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
++T++GL+ + + L+ LD C Q+SD G+ HL G++ +A
Sbjct: 240 NITNTGLLCIAWNLKKLKRLDLRSCWQVSDLGIAHLAGVNR-----------------EA 282
Query: 127 FAGLINLVKLDLERCTRIHG-GLVNLK-GLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
G L L L+ C R+ L ++ GL L+S+N+ +C CITDS +K L+ +++L+
Sbjct: 283 AGGNFALEHLSLQDCQRLSDEALRHISIGLTTLKSINLSFCVCITDSGVKHLAKMSSLRE 342
Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTA--ACLDSLSALGSLFYLNLNRCQL 240
L + SC ++D G+AYL +G +++ L++ C A + L +L L+L+ CQ+
Sbjct: 343 LNLRSCDNISDIGMAYLAEGGSRISSLDVSFCDKIGDQALVHISQGLFNLKSLSLSACQI 402
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLT-G 298
SD+G K +K L +LE+LN+ C + D+GL +
Sbjct: 403 SDEGICKIAKT-----------------------LHDLETLNIGQCSRLTDKGLYTIAES 439
Query: 299 LCNLKCLELSD-TQVGSSGLRHLSGLTNLESINL 331
+ +LKC++L T++ ++GL + L L ++NL
Sbjct: 440 MKHLKCIDLYGCTRISTNGLERIMKLPQLSTLNL 473
Score = 74.7 bits (182), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 96/325 (29%), Positives = 159/325 (48%), Gaps = 68/325 (20%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGL------EH----------------------LRGLSNL 108
L+ NL++L+ + C I+D GL E+ ++ L NL
Sbjct: 171 LRGVPNLEALNLSGCYNITDAGLINAFCQEYSTLTELNLSLCKQVSDISLGRIVQYLKNL 230
Query: 109 TSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRIHG-GLVNLKGLMK--------LE 158
L IT G+ A L L +LDL C ++ G+ +L G+ + LE
Sbjct: 231 EHLELGGCCNITNTGLLCIAWNLKKLKRLDLRSCWQVSDLGIAHLAGVNREAAGGNFALE 290
Query: 159 SLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
L+++ C ++D ++ +S GLT LKS+ +S C +TDSG+ +L + L LNL C
Sbjct: 291 HLSLQDCQRLSDEALRHISIGLTTLKSINLSFCVCITDSGVKHLAKMSSLRELNLRSC-- 348
Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHL-KG 274
D++S +G + L++ G S+I SL V F ++I D+ LVH+ +G
Sbjct: 349 -----DNISDIGMAY--------LAEGG----SRISSLDV---SFCDKIGDQALVHISQG 388
Query: 275 LTNLESLNLDSCGIGDEGLVNLTG-LCNLKCLELSD-TQVGSSGLRHLS-GLTNLESINL 331
L NL+SL+L +C I DEG+ + L +L+ L + +++ GL ++ + +L+ I+L
Sbjct: 389 LFNLKSLSLSACQISDEGICKIAKTLHDLETLNIGQCSRLTDKGLYTIAESMKHLKCIDL 448
Query: 332 -SFTGISDGSLRKLAGLSSLKSLNL 355
T IS L ++ L L +LNL
Sbjct: 449 YGCTRISTNGLERIMKLPQLSTLNL 473
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 94/311 (30%), Positives = 149/311 (47%), Gaps = 56/311 (18%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNL--KGLMKLES 159
RG+ + LS RR G+ NL L+L C I GL+N + L
Sbjct: 153 RGVKRVQVLSLRRGLG------DVLRGVPNLEALNLSGCYNITDAGLINAFCQEYSTLTE 206
Query: 160 LNIKWCNCITDSDM-KPLSGLTNLKSLQIS-CSKVTDSG---IAYLKGLQKLTLLNLEGC 214
LN+ C ++D + + + L NL+ L++ C +T++G IA+ L+KL L+L C
Sbjct: 207 LNLSLCKQVSDISLGRIVQYLKNLEHLELGGCCNITNTGLLCIAW--NLKKLKRLDLRSC 264
Query: 215 PVTA-------ACLDSLSALG--SLFYLNLNRCQ-LSDDGCEKFS-KIGSLKVLNLGFNE 263
+ A ++ +A G +L +L+L CQ LSD+ S + +LK +NL F
Sbjct: 265 WQVSDLGIAHLAGVNREAAGGNFALEHLSLQDCQRLSDEALRHISIGLTTLKSINLSFCV 324
Query: 264 -ITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 321
ITD + HL +++L LNL SC I D G+ L
Sbjct: 325 CITDSGVKHLAKMSSLRELNLRSCDNISDIGMAYLA-----------------------E 361
Query: 322 GLTNLESINLSFT-GISDGSLRKLA-GLSSLKSLNLDARQITDTGLAALT-SLTGLTHLD 378
G + + S+++SF I D +L ++ GL +LKSL+L A QI+D G+ + +L L L+
Sbjct: 362 GGSRISSLDVSFCDKIGDQALVHISQGLFNLKSLSLSACQISDEGICKIAKTLHDLETLN 421
Query: 379 LFG-ARITDSG 388
+ +R+TD G
Sbjct: 422 IGQCSRLTDKG 432
>gi|290972583|ref|XP_002669031.1| predicted protein [Naegleria gruberi]
gi|284082572|gb|EFC36287.1| predicted protein [Naegleria gruberi]
Length = 369
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 82/299 (27%), Positives = 139/299 (46%), Gaps = 7/299 (2%)
Query: 99 LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158
+E + + LT L N I M+ + L +LD+ERC G+ L + +L
Sbjct: 18 IEAISEMRQLTKLGI---NGIQDNDMRQIGMMSQLTELDIERCDISGEGIKFLIVMPQLT 74
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
SLN + N + D K +S ++ L L I+ +++ G Y+ L +LT L++ + +
Sbjct: 75 SLNGGY-NYLQCGDAKLISEMSKLTKLDINTNEIGTEGAKYISTLNQLTELDIGNNNILS 133
Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 278
+ L +L LN+ R + D+G S++ L L++GFN E + + L +L
Sbjct: 134 EGAKFIRNLKNLVKLNVERNNIGDEGANYISEMKQLTALDIGFNMFGFEGIKAISQLNHL 193
Query: 279 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT--QVGSSGLRHL-SGLTNLESINLSFTG 335
L++ I G+ +T NL L L + + L L S + L ++++
Sbjct: 194 IELSIQGNEITINGVKLITEKKNLTSLNLGNIFYDTKTPELSQLVSQMHQLTTLDIENNN 253
Query: 336 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRS 394
I LA + +LK LN+ I GL+ +T LT LT L++ G +I D GA + S
Sbjct: 254 IGPEVANLLAEMKNLKHLNIAFNNIEKEGLSHITQLTQLTSLNVCGNQIDDEGAKIVSS 312
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 74/282 (26%), Positives = 131/282 (46%), Gaps = 6/282 (2%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
+ + S L LD N +I G +++ L+ LT L NN I ++G K L NLVKL
Sbjct: 91 ISEMSKLTKLDINTN-EIGTEGAKYISTLNQLTELDIGNNN-ILSEGAKFIRNLKNLVKL 148
Query: 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG 196
++ER G + + +L +L+I + N +K +S L +L L I +++T +G
Sbjct: 149 NVERNNIGDEGANYISEMKQLTALDIGF-NMFGFEGIKAISQLNHLIELSIQGNEITING 207
Query: 197 IAYLKGLQKLTLLNLEGC---PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS 253
+ + + LT LNL T +S + L L++ + + +++ +
Sbjct: 208 VKLITEKKNLTSLNLGNIFYDTKTPELSQLVSQMHQLTTLDIENNNIGPEVANLLAEMKN 267
Query: 254 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 313
LK LN+ FN I E L H+ LT L SLN+ I DEG ++ + L L + + +
Sbjct: 268 LKHLNIAFNNIEKEGLSHITQLTQLTSLNVCGNQIDDEGAKIVSSMKQLLKLNIEENFLN 327
Query: 314 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355
G + + L + +S I + + + G +L+ + +
Sbjct: 328 EGGCETIIEMPQLTQLYISSNRIGEKQVEMICGKKNLRDIRI 369
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 95/205 (46%), Gaps = 6/205 (2%)
Query: 193 TDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG 252
T S I + +++LT L + G + + + + L L++ RC +S +G + +
Sbjct: 14 TSSSIEAISEMRQLTKLGING--IQDNDMRQIGMMSQLTELDIERCDISGEGIKFLIVMP 71
Query: 253 SLKVLNLGFNEIT--DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 310
L LN G+N + D L+ ++ L L++++ IG EG ++ L L L++ +
Sbjct: 72 QLTSLNGGYNYLQCGDAKLI--SEMSKLTKLDINTNEIGTEGAKYISTLNQLTELDIGNN 129
Query: 311 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 370
+ S G + + L NL +N+ I D ++ + L +L++ G+ A++
Sbjct: 130 NILSEGAKFIRNLKNLVKLNVERNNIGDEGANYISEMKQLTALDIGFNMFGFEGIKAISQ 189
Query: 371 LTGLTHLDLFGARITDSGAAYLRSK 395
L L L + G IT +G + K
Sbjct: 190 LNHLIELSIQGNEITINGVKLITEK 214
>gi|307215039|gb|EFN89866.1| F-box/LRR-repeat protein 14 [Harpegnathos saltator]
Length = 457
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 86/287 (29%), Positives = 142/287 (49%), Gaps = 41/287 (14%)
Query: 68 DVTDSGLIHLKDC-SNLQSLDFNFCIQISDGGLEHLR-GLSNLTSLSFRRNNAITAQGMK 125
VTD+ L + NL+ L+ C I++ GL + GL L L R ++ QG+
Sbjct: 193 QVTDTSLGRIAQYLKNLEHLELGGCCNITNTGLMVIAWGLKKLKRLDLRSCWHVSDQGIA 252
Query: 126 AFAGL-------INLVKLDLERCTRIHG-GLVNLK-GLMKLESLNIKWCNCITDSDMKPL 176
AGL + L L L+ C R+ L N+ GL L+S+N+ +C CITDS +K L
Sbjct: 253 YLAGLNREADGNLALEHLSLQDCQRLSDEALRNVSLGLTTLKSINLSFCVCITDSGVKHL 312
Query: 177 SGLTNLKSLQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTA--ACLDSLSALGSLFY 232
+ +++L+ L + SC ++D G+AYL +G ++T L++ C A + L +L
Sbjct: 313 ARMSSLRELNLRSCDNISDIGMAYLAEGGSRITSLDVSFCDKIGDQALVHISQGLFNLKS 372
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDE 291
L+L+ CQ+SD+G K +K L +LE+LN+ C + D
Sbjct: 373 LSLSACQISDEGICKIAKT-----------------------LHDLETLNIGQCSRLTDR 409
Query: 292 GLVNLT-GLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSFTGI 336
L + + +LKC++L T++ +SGL + L L ++NL +
Sbjct: 410 SLHTMAENMKHLKCIDLYGCTKITTSGLERIMKLPQLSTLNLGLWHV 456
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 102/318 (32%), Positives = 156/318 (49%), Gaps = 53/318 (16%)
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG--- 178
Q FA L+ ++ + HG L+G+ LE+LN+ C ITD+ + +SG
Sbjct: 121 QAPALFASLVRRGVKKVQVLSLRHGLSAVLRGVPNLEALNLSGCYNITDTGI--MSGFCQ 178
Query: 179 -LTNLKSLQIS-CSKVTDSGIA----YLK-----------------------GLQKLTLL 209
L L L +S C +VTD+ + YLK GL+KL L
Sbjct: 179 ELPTLTVLNLSLCKQVTDTSLGRIAQYLKNLEHLELGGCCNITNTGLMVIAWGLKKLKRL 238
Query: 210 NLEGC-PVTAACLDSLSALG-------SLFYLNLNRCQ-LSDDGCEKFS-KIGSLKVLNL 259
+L C V+ + L+ L +L +L+L CQ LSD+ S + +LK +NL
Sbjct: 239 DLRSCWHVSDQGIAYLAGLNREADGNLALEHLSLQDCQRLSDEALRNVSLGLTTLKSINL 298
Query: 260 GFNE-ITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSDT-QVGSS 315
F ITD + HL +++L LNL SC I D G+ L G + L++S ++G
Sbjct: 299 SFCVCITDSGVKHLARMSSLRELNLRSCDNISDIGMAYLAEGGSRITSLDVSFCDKIGDQ 358
Query: 316 GLRHLS-GLTNLESINLSFTGISDGSLRKLAG-LSSLKSLNL-DARQITDTGLAALT-SL 371
L H+S GL NL+S++LS ISD + K+A L L++LN+ ++TD L + ++
Sbjct: 359 ALVHISQGLFNLKSLSLSACQISDEGICKIAKTLHDLETLNIGQCSRLTDRSLHTMAENM 418
Query: 372 TGLTHLDLFG-ARITDSG 388
L +DL+G +IT SG
Sbjct: 419 KHLKCIDLYGCTKITTSG 436
>gi|428304096|ref|YP_007140921.1| hypothetical protein Cri9333_0441 [Crinalium epipsammum PCC 9333]
gi|428245631|gb|AFZ11411.1| leucine-rich repeat-containing protein [Crinalium epipsammum PCC
9333]
Length = 504
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 100/280 (35%), Positives = 145/280 (51%), Gaps = 49/280 (17%)
Query: 98 GLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
LE ++ L NLT+L+ FA I+ VK L+ L KL
Sbjct: 83 SLEGIQALRNLTTLNL-------------FANQISDVK--------------PLRSLTKL 115
Query: 158 ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
+L + N I SD+KPL GLTNL L +S +K++D + L GL KLT L+L ++
Sbjct: 116 TTLELV-SNKI--SDVKPLFGLTNLNRLDLSDNKISD--VKPLTGLTKLTELDLSDNKIS 170
Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 277
++ L L +L L+L+R +LSD + + L +L L N+I+D L L LT
Sbjct: 171 D--VEPLFGLTNLGVLDLSRNKLSD--LKPLWGLTKLTMLLLNTNQISD--LKPLANLTK 224
Query: 278 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 337
L +L+L I D + LTGL L L L D ++ S L+ L GLTNL + L+ IS
Sbjct: 225 LTTLDLSDNKISD--VKPLTGLTKLTELALGDNKI--SDLKPLLGLTNLTELVLNTNEIS 280
Query: 338 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 377
D + L GL+++ SL+L +I++ +TSLTGLT L
Sbjct: 281 D--VTSLTGLTNITSLHLGGNKISN-----VTSLTGLTKL 313
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 84/237 (35%), Positives = 134/237 (56%), Gaps = 21/237 (8%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
++ L L +LN+ + N I SD+KPL LT L +L++ +K++D + L GL L L+
Sbjct: 87 IQALRNLTTLNL-FANQI--SDVKPLRSLTKLTTLELVSNKISD--VKPLFGLTNLNRLD 141
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
L + + + L+ L L L+L+ ++SD E + +L VL+L N+++D L
Sbjct: 142 LSDNKI--SDVKPLTGLTKLTELDLSDNKISD--VEPLFGLTNLGVLDLSRNKLSD--LK 195
Query: 271 HLKGLTNLESLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 329
L GLT L L L++ I D + L NLT L L+LSD ++ S ++ L+GLT L +
Sbjct: 196 PLWGLTKLTMLLLNTNQISDLKPLANLTKLT---TLDLSDNKI--SDVKPLTGLTKLTEL 250
Query: 330 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
L ISD L+ L GL++L L L+ +I+D + +LT LT +T L L G +I++
Sbjct: 251 ALGDNKISD--LKPLLGLTNLTELVLNTNEISD--VTSLTGLTNITSLHLGGNKISN 303
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 70/203 (34%), Positives = 102/203 (50%), Gaps = 19/203 (9%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
+NL LD + +ISD ++ L GL+ LT L N ++ GL NL LDL R
Sbjct: 135 TNLNRLDLSDN-KISD--VKPLTGLTKLTELDLSDNKI---SDVEPLFGLTNLGVLDLSR 188
Query: 141 CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL 200
L +LK L L L + N SD+KPL+ LT L +L +S +K++D + L
Sbjct: 189 -----NKLSDLKPLWGLTKLTMLLLNTNQISDLKPLANLTKLTTLDLSDNKISD--VKPL 241
Query: 201 KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG 260
GL KLT L L + + L L L +L L LN ++SD + + ++ L+LG
Sbjct: 242 TGLTKLTELALGDNKI--SDLKPLLGLTNLTELVLNTNEISD--VTSLTGLTNITSLHLG 297
Query: 261 FNEITDECLVHLKGLTNLESLNL 283
N+I++ + L GLT L L L
Sbjct: 298 GNKISN--VTSLTGLTKLAWLYL 318
>gi|357134265|ref|XP_003568738.1| PREDICTED: uncharacterized protein LOC100844673 [Brachypodium
distachyon]
Length = 547
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 100/428 (23%), Positives = 170/428 (39%), Gaps = 87/428 (20%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
LP ++ + L R L+ LE FR S+
Sbjct: 44 LPGQLADALLQRLAARRLLSPSLLEVFRH---------------------------SVEE 76
Query: 62 VDLSGSDVTDS-GLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
+DLSG+ D+ L +L L+ L C +++ + L L + +T
Sbjct: 77 IDLSGNIAVDAEWLAYLGSFRYLRVLKLADCKNVNNSAVWALSDLGGI---------HMT 127
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
+ +++ L L LD+ + G LK +L LN+ W + + + PL L
Sbjct: 128 DKTLRSLQVLTRLEHLDIWGSEITNEGASVLKAFTRLSFLNVSWTHV---TRLPPLPNLQ 184
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA-CLDSLSAL--GSLFYLNLNR 237
+L + + D L+K T+ C + + S++ SL YL+++
Sbjct: 185 HLNMSNCTIHSIRDGDSEVNVPLEKFTV-----CAASFGNIFEVFSSIQGSSLLYLDMSG 239
Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL---------------------- 275
C LS+ F K+ ++ L+L F+ ITD + H+ +
Sbjct: 240 CSLSN--LHIFEKMKHIEHLDLSFSRITDAAIQHVANIGMNLRHLSLKNTGITSQAPCIL 297
Query: 276 ----TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS-----------SGLRHL 320
NL SL+L I D L ++ + +L+ ++LS T + + L
Sbjct: 298 AGTVPNLSSLSLAYTEIDDSALAYISMMPSLRVIDLSHTSIKGFTCVEVNSEKIPSMPPL 357
Query: 321 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 380
L LES+NL T +SD + LA ++K L L + ++D L AL+S + LTHL
Sbjct: 358 EHLMYLESLNLEDTALSDEVIPPLASFRAIKYLYLKSDFLSDPALHALSSASNLTHLGFC 417
Query: 381 GARITDSG 388
G ++DSG
Sbjct: 418 GNILSDSG 425
Score = 43.1 bits (100), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 83/194 (42%), Gaps = 32/194 (16%)
Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 281
+ L+ LGS YL + +L+D C+ + + +LG +TD+ L L+ LT LE L
Sbjct: 88 EWLAYLGSFRYLRV--LKLAD--CKNVNNSAVWALSDLGGIHMTDKTLRSLQVLTRLEHL 143
Query: 282 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS---FTGISD 338
++ I +EG L L L +S T V L L NL+ +N+S I D
Sbjct: 144 DIWGSEITNEGASVLKAFTRLSFLNVSWTHVT-----RLPPLPNLQHLNMSNCTIHSIRD 198
Query: 339 G------SLRKLAG-----------LSSLKS---LNLDARQITDTGLAALTSLTGLTHLD 378
G L K SS++ L LD + + L + + HLD
Sbjct: 199 GDSEVNVPLEKFTVCAASFGNIFEVFSSIQGSSLLYLDMSGCSLSNLHIFEKMKHIEHLD 258
Query: 379 LFGARITDSGAAYL 392
L +RITD+ ++
Sbjct: 259 LSFSRITDAAIQHV 272
>gi|290974952|ref|XP_002670208.1| leucine-rich repeat protein [Naegleria gruberi]
gi|284083764|gb|EFC37464.1| leucine-rich repeat protein [Naegleria gruberi]
Length = 252
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 111/231 (48%)
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
+CN + K +S + L SL IS +++ D G ++ G+++LT LN+ S
Sbjct: 10 YCNQVGVEGAKSISEMKQLTSLNISNNEIGDKGANFISGMKQLTSLNIGSNKFGNEGAKS 69
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
+S + L L + Q+ D+G + S++ L +++ +N I + + + L SL++
Sbjct: 70 ISEMKQLTVLYIGLNQIGDEGVKFISEMKRLTSVDICYNGIGVKGANSISEMKQLTSLDI 129
Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
IGDEG +++ L L L +S Q+G G + +S L L S+ +S I
Sbjct: 130 CLNQIGDEGAKSISELEQLTLLYISANQIGDEGAKSISELKQLTSLAISANQIGVKGAES 189
Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRS 394
++ L L SL A QI G+ ++ + LT LD+ RI G L S
Sbjct: 190 ISELKQLTSLAASANQIGAEGVKFISEMKQLTSLDIGNNRIGAEGVTLLTS 240
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 100/213 (46%), Gaps = 2/213 (0%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
+I D G + G+ LTSL+ +N +G K+ + + L L + G+ +
Sbjct: 37 EIGDKGANFISGMKQLTSLNIG-SNKFGNEGAKSISEMKQLTVLYIGLNQIGDEGVKFIS 95
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
+ +L S++I + N I +S + L SL I +++ D G + L++LTLL +
Sbjct: 96 EMKRLTSVDICY-NGIGVKGANSISEMKQLTSLDICLNQIGDEGAKSISELEQLTLLYIS 154
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
+ S+S L L L ++ Q+ G E S++ L L N+I E + +
Sbjct: 155 ANQIGDEGAKSISELKQLTSLAISANQIGVKGAESISELKQLTSLAASANQIGAEGVKFI 214
Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 305
+ L SL++ + IG EG+ LT L +LK L
Sbjct: 215 SEMKQLTSLDIGNNRIGAEGVTLLTSLTSLKFL 247
>gi|241724224|ref|XP_002413721.1| F-box/LRR-repeat protein, putative [Ixodes scapularis]
gi|215507537|gb|EEC17029.1| F-box/LRR-repeat protein, putative [Ixodes scapularis]
Length = 315
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 95/340 (27%), Positives = 166/340 (48%), Gaps = 62/340 (18%)
Query: 69 VTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
V+D GL +L NL SLD + C+ ++D GLEH+ +S+L L+ +T+Q M
Sbjct: 12 VSDLGLEYLSLRLKNLVSLDLSMCLSVTDAGLEHIAKISSLKKLTLLGCEDLTSQSMFHL 71
Query: 128 AGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS---GLTNLKS 184
A +L L I +CN I D+ + ++ GL +L +
Sbjct: 72 A-----------------------TARFRLNCLIISYCNQIEDTGIHMINRGQGLVSLTT 108
Query: 185 LQISCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGS----LFYLNLNRCQ 239
L ++ +TD G++ + + L+ LT LN+ C + D +S + + L ++N+ C
Sbjct: 109 LNVNACPITDVGLSVVAEKLRDLTALNISECEYVSK--DGISVVAANLRKLRFINMRLCT 166
Query: 240 -LSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
L++ + +++ SL+V+NL G +IT KG+ + S G G ++
Sbjct: 167 GLTNISLKHLARMSSLEVINLKGCTKITG------KGMAFMAS------GEGQSSVLE-- 212
Query: 298 GLCNLKCLELSDTQVGSSGLRHLS-GLTNLESINLSFTGISDGSLRKLA-GLSSLKSLNL 355
L++S T +G +GLR+++ G+ L S++L ISD L ++A L +L +L +
Sbjct: 213 -------LDVSFTSIGDTGLRYIAQGMQKLRSLSLCGCLISDKGLTRIARNLHALNTLKI 265
Query: 356 D-ARQITDTGLAALT-SLTGLTHLDLFG-ARITDSGAAYL 392
+ITD G+ + +L L +DL G +RIT +G L
Sbjct: 266 SRCSRITDNGIKVVACNLKRLRQIDLKGCSRITSAGKRSL 305
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 77/249 (30%), Positives = 128/249 (51%), Gaps = 34/249 (13%)
Query: 157 LESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC 214
LE L ++ C ++D ++ LS L NL SL +S C VTD+G+ ++ + L L L GC
Sbjct: 1 LEYLGLEDCALVSDLGLEYLSLRLKNLVSLDLSMCLSVTDAGLEHIAKISSLKKLTLLGC 60
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLS---DDGCEKFSKIGSLKVLNLGFNEITDECLVH 271
+ L++ S+F+L R +L+ C + G + ++N G
Sbjct: 61 -------EDLTS-QSMFHLATARFRLNCLIISYCNQIEDTG-IHMINRG----------- 100
Query: 272 LKGLTNLESLNLDSCGIGDEGL-VNLTGLCNLKCLELSDTQ-VGSSGLRHLSG-LTNLES 328
+GL +L +LN+++C I D GL V L +L L +S+ + V G+ ++ L L
Sbjct: 101 -QGLVSLTTLNVNACPITDVGLSVVAEKLRDLTALNISECEYVSKDGISVVAANLRKLRF 159
Query: 329 INLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTG---LTHLDLFGAR 383
IN+ TG+++ SL+ LA +SSL+ +NL +IT G+A + S G + LD+
Sbjct: 160 INMRLCTGLTNISLKHLARMSSLEVINLKGCTKITGKGMAFMASGEGQSSVLELDVSFTS 219
Query: 384 ITDSGAAYL 392
I D+G Y+
Sbjct: 220 IGDTGLRYI 228
Score = 45.1 bits (105), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 73/131 (55%), Gaps = 7/131 (5%)
Query: 20 LTEVSLEAF-RDCALQDLCLGQYPGVNDKWMDVIAS-QG-SSLLSVDLSGSDVTDSGLIH 76
LT +SL+ R +L+ + L + K M +AS +G SS+L +D+S + + D+GL +
Sbjct: 168 LTNISLKHLARMSSLEVINLKGCTKITGKGMAFMASGEGQSSVLELDVSFTSIGDTGLRY 227
Query: 77 L-KDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFA-GLINL 133
+ + L+SL C+ ISD GL + R L L +L R + IT G+K A L L
Sbjct: 228 IAQGMQKLRSLSLCGCL-ISDKGLTRIARNLHALNTLKISRCSRITDNGIKVVACNLKRL 286
Query: 134 VKLDLERCTRI 144
++DL+ C+RI
Sbjct: 287 RQIDLKGCSRI 297
>gi|302753328|ref|XP_002960088.1| hypothetical protein SELMODRAFT_437235 [Selaginella moellendorffii]
gi|300171027|gb|EFJ37627.1| hypothetical protein SELMODRAFT_437235 [Selaginella moellendorffii]
Length = 657
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 103/378 (27%), Positives = 171/378 (45%), Gaps = 66/378 (17%)
Query: 43 GVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
G+ D + ++A L ++DLS ++VTD GL + +L+ L+ C + DGGL L
Sbjct: 190 GITDIGIALVAVNCKQLRTLDLSYTEVTDEGLASIATLHSLEVLNLVSCNNVDDGGLRSL 249
Query: 103 -RGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRIHGGLVN---------- 150
R +L L R + ++ G+ A A ++L +L L C+ I L+
Sbjct: 250 KRSCRSLLKLDVSRCSNVSDAGLAALATSHLSLEQLTLSYCSIITDDLLATFQKFDHLQS 309
Query: 151 ----------------LKGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKSLQISCSK-V 192
+G +L+ L++ C +TD + ++ G T L L ++C + +
Sbjct: 310 IVLDGCEIARNGLPFIARGCKQLKELSLSKCRGVTDRGIAAVAQGCTALHKLNLTCCREL 369
Query: 193 TDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGS----LFYLNLNRCQLSDDGCEK 247
TD+ + + K + L L +E C + D L LG L L+ C +SD G +
Sbjct: 370 TDASLCRISKDCKGLESLKMESCSLITE--DGLCGLGEGCPRLEELDFTECNMSDTGLKY 427
Query: 248 FSKIGSLKVLNLGF-NEITDECLVHLKG-LTNLESLNL-DSCGIGDEGLVNLTGLCNLKC 304
SK +L+ L LGF + ITD+ + H+ NL L+ S GIGD G+ +
Sbjct: 428 ISKCTALRSLKLGFCSTITDKGVAHIGARCCNLRELDFYRSKGIGDAGVAAIA------- 480
Query: 305 LELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITD 362
SG L+ ++LS+ + I+D SL+ L+ L L+ L L ++
Sbjct: 481 ----------------SGCPKLKLLDLSYCSKITDCSLQSLSQLRELQRLELRGCVLVSS 524
Query: 363 TGLAALTS-LTGLTHLDL 379
TGLA + S LT +D+
Sbjct: 525 TGLAVMASGCKRLTEIDI 542
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 108/381 (28%), Positives = 174/381 (45%), Gaps = 64/381 (16%)
Query: 56 GSSLLSVDLS---GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS 112
G+ L S++LS G GL+ C++L +D ++C + D + L +SNL +L
Sbjct: 99 GNRLASINLSRVGGFTSAGLGLLARSCCASLTDVDLSYCSNLKDSDVLALAQISNLQALR 158
Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 172
++IT G+ A ++KL L +K C ITD
Sbjct: 159 LTGCHSITDIGLGCLAAGCKMLKL-----------------------LTLKGCLGITDIG 195
Query: 173 MKPLS-GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLS-ALGS 229
+ ++ L++L +S ++VTD G+A + L L +LNL C V L SL + S
Sbjct: 196 IALVAVNCKQLRTLDLSYTEVTDEGLASIATLHSLEVLNLVSCNNVDDGGLRSLKRSCRS 255
Query: 230 LFYLNLNRC-QLSDDGCEKFSKIG-SLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC 286
L L+++RC +SD G + SL+ L L + + ITD+ L + +L+S+ LD C
Sbjct: 256 LLKLDVSRCSNVSDAGLAALATSHLSLEQLTLSYCSIITDDLLATFQKFDHLQSIVLDGC 315
Query: 287 GIGDEGLVNLTGLC-NLKCLELSDTQ-VGSSGLRHLS-GLTNLESINLS-FTGISDGSLR 342
I GL + C LK L LS + V G+ ++ G T L +NL+ ++D SL
Sbjct: 316 EIARNGLPFIARGCKQLKELSLSKCRGVTDRGIAAVAQGCTALHKLNLTCCRELTDASLC 375
Query: 343 KLA----GLSSLK-----------------------SLNLDARQITDTGLAALTSLTGLT 375
+++ GL SLK L+ ++DTGL ++ T L
Sbjct: 376 RISKDCKGLESLKMESCSLITEDGLCGLGEGCPRLEELDFTECNMSDTGLKYISKCTALR 435
Query: 376 HLDL-FGARITDSGAAYLRSK 395
L L F + ITD G A++ ++
Sbjct: 436 SLKLGFCSTITDKGVAHIGAR 456
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 80/292 (27%), Positives = 127/292 (43%), Gaps = 48/292 (16%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHL-KDCSNLQSLDFNF 90
L++L L + GV D+ + +A ++L ++L+ ++TD+ L + KDC L+SL
Sbjct: 332 LKELSLSKCRGVTDRGIAAVAQGCTALHKLNLTCCRELTDASLCRISKDCKGLESLKMES 391
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN 150
C I++ GL GL G L +LD C GL
Sbjct: 392 CSLITEDGLC---GLGE---------------------GCPRLEELDFTECNMSDTGLKY 427
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSG-LTNLKSLQISCSK-VTDSGIAYLK-GLQKLT 207
+ L SL + +C+ ITD + + NL+ L SK + D+G+A + G KL
Sbjct: 428 ISKCTALRSLKLGFCSTITDKGVAHIGARCCNLRELDFYRSKGIGDAGVAAIASGCPKLK 487
Query: 208 LLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQLSDD--------GCEKFSKIGSLK--- 255
LL+L C +T L SLS L L L L C L GC++ ++I +
Sbjct: 488 LLDLSYCSKITDCSLQSLSQLRELQRLELRGCVLVSSTGLAVMASGCKRLTEIDIKRCSQ 547
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 307
+ N G + ++ C L +N+ C I GL++L L L+ + L
Sbjct: 548 IGNAGVSALSFFC-------PGLRMMNISYCPISKAGLLSLPRLSCLQSVRL 592
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 75/164 (45%), Gaps = 4/164 (2%)
Query: 29 RDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLS-GSDVTDSGLIHLKDCSNLQSLD 87
R C L++L + G+ D + IAS L +DLS S +TD L L LQ L+
Sbjct: 456 RCCNLRELDFYRSKGIGDAGVAAIASGCPKLKLLDLSYCSKITDCSLQSLSQLRELQRLE 515
Query: 88 FNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFAGLI-NLVKLDLERCTRIH 145
C+ +S GL + G LT + +R + I G+ A + L +++ C
Sbjct: 516 LRGCVLVSSTGLAVMASGCKRLTEIDIKRCSQIGNAGVSALSFFCPGLRMMNISYCPISK 575
Query: 146 GGLVNLKGLMKLESLN-IKWCNCITDSDMKPLSGLTNLKSLQIS 188
GL++L L L+S+ + N D + L +LK++++
Sbjct: 576 AGLLSLPRLSCLQSVRLVHLKNVTVDCFVTVLQNCKSLKNVKLP 619
>gi|219821342|gb|ACL37806.1| internalin A [Listeria monocytogenes]
Length = 739
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 118/358 (32%), Positives = 172/358 (48%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 252
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
LTGL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 253 SPLTGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 310
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 311 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNY 366
>gi|260804809|ref|XP_002597280.1| hypothetical protein BRAFLDRAFT_260896 [Branchiostoma floridae]
gi|229282543|gb|EEN53292.1| hypothetical protein BRAFLDRAFT_260896 [Branchiostoma floridae]
Length = 398
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 104/312 (33%), Positives = 162/312 (51%), Gaps = 32/312 (10%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC---TRIHGGLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+V L+L C T I + + L
Sbjct: 69 RGIRKVQILSLRRSLSYVVQGMS------NIVSLNLSGCYNLTDIGLSHAFTQDVPSLTE 122
Query: 160 LNIKWCNCITDSDMKPLSG-LTNLKSLQI-SCSKVTDSGIAYLK-GLQKLTLLNLEGC-P 215
LN+ C ITDS + ++ L NL+ L + C +T++G+ GL KL LNL C
Sbjct: 123 LNLSLCKQITDSSLGRIAQYLKNLERLDLGGCCNITNTGLLLCAWGLLKLRYLNLRSCRH 182
Query: 216 VTAACLDSLSALGS--------LFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-NEI 264
++ + LS + L +L L CQ L+D + SK + LK LNL F I
Sbjct: 183 ISDVGIGHLSGISKNAAEGCLHLEHLCLQDCQKLTDLALKHVSKGLQRLKSLNLSFCCGI 242
Query: 265 TDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRHLS 321
+D +++L +++L+ LNL SC I D G+ +L G + L++S +VG S L H++
Sbjct: 243 SDGGMMYLAKMSSLKELNLRSCDNISDIGIAHLADGSATISHLDVSFCDKVGDSALGHIA 302
Query: 322 -GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALT-SLTGLTHL 377
GL +L S++L ISD L R + + L +L++ +ITD GL + +LT LT++
Sbjct: 303 HGLYHLHSLSLGSCNISDEGLNRMVRSMHELTTLDIGQCYKITDKGLGLIADNLTQLTNI 362
Query: 378 DLFG-ARITDSG 388
DL+G +IT +G
Sbjct: 363 DLYGCTKITTAG 374
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 99/303 (32%), Positives = 153/303 (50%), Gaps = 32/303 (10%)
Query: 81 SNLQSLDFNFCIQISDGGLEHL--RGLSNLTSLSFRRNNAITAQGMKAFAG-LINLVKLD 137
SN+ SL+ + C ++D GL H + + +LT L+ IT + A L NL +LD
Sbjct: 91 SNIVSLNLSGCYNLTDIGLSHAFTQDVPSLTELNLSLCKQITDSSLGRIAQYLKNLERLD 150
Query: 138 LERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT--------NLKSLQI 187
L C I G L+ GL+KL LN++ C I+D + LSG++ +L+ L +
Sbjct: 151 LGGCCNITNTGLLLCAWGLLKLRYLNLRSCRHISDVGIGHLSGISKNAAEGCLHLEHLCL 210
Query: 188 S-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDD 243
C K+TD + ++ KGLQ+L LNL C ++ + L+ + SL LNL C +SD
Sbjct: 211 QDCQKLTDLALKHVSKGLQRLKSLNLSFCCGISDGGMMYLAKMSSLKELNLRSCDNISDI 270
Query: 244 GCEKFSK-IGSLKVLNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGL------- 293
G + ++ L++ F +++ D L H+ GL +L SL+L SC I DEGL
Sbjct: 271 GIAHLADGSATISHLDVSFCDKVGDSALGHIAHGLYHLHSLSLGSCNISDEGLNRMVRSM 330
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLKS 352
LT L +C +++D +G LT L +I+L T I+ L ++ L L
Sbjct: 331 HELTTLDIGQCYKITDKGLGLIA----DNLTQLTNIDLYGCTKITTAGLERIMQLPRLSV 386
Query: 353 LNL 355
LNL
Sbjct: 387 LNL 389
Score = 67.8 bits (164), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 78/236 (33%), Positives = 121/236 (51%), Gaps = 40/236 (16%)
Query: 176 LSGLTNLKSLQIS-CSKVTDSGI--AYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLF 231
+ G++N+ SL +S C +TD G+ A+ + + LT LNL C +T + L ++ +
Sbjct: 87 VQGMSNIVSLNLSGCYNLTDIGLSHAFTQDVPSLTELNLSLCKQITDSSLGRIAQ----Y 142
Query: 232 YLNLNRCQLSDDGCEKFSKIG---------SLKVLNL-GFNEITDECLVHLKGLTNLESL 281
NL R L GC + G L+ LNL I+D + HL G++ +
Sbjct: 143 LKNLERLDLG--GCCNITNTGLLLCAWGLLKLRYLNLRSCRHISDVGIGHLSGISKNAA- 199
Query: 282 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS-GLTNLESINLSFT-GISDG 339
EG ++L LC C +L+D L+H+S GL L+S+NLSF GISDG
Sbjct: 200 ---------EGCLHLEHLCLQDCQKLTDL-----ALKHVSKGLQRLKSLNLSFCCGISDG 245
Query: 340 SLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTG-LTHLDL-FGARITDSGAAYL 392
+ LA +SSLK LNL + I+D G+A L + ++HLD+ F ++ DS ++
Sbjct: 246 GMMYLAKMSSLKELNLRSCDNISDIGIAHLADGSATISHLDVSFCDKVGDSALGHI 301
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 90/174 (51%), Gaps = 7/174 (4%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ K L+SL+ +FC ISDGG+ +L +S+L L+ R + I+ G+
Sbjct: 216 LTDLALKHVSKGLQRLKSLNLSFCCGISDGGMMYLAKMSSLKELNLRSCDNISDIGIAHL 275
Query: 128 A-GLINLVKLDLERCTRIHGGLVN--LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + LD+ C ++ + GL L SL++ CN + + + + L +
Sbjct: 276 ADGSATISHLDVSFCDKVGDSALGHIAHGLYHLHSLSLGSCNISDEGLNRMVRSMHELTT 335
Query: 185 LQI-SCSKVTDSGIAYLK-GLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNL 235
L I C K+TD G+ + L +LT ++L GC +T A L+ + L L LNL
Sbjct: 336 LDIGQCYKITDKGLGLIADNLTQLTNIDLYGCTKITTAGLERIMQLPRLSVLNL 389
>gi|290998760|ref|XP_002681948.1| predicted protein [Naegleria gruberi]
gi|284095574|gb|EFC49204.1| predicted protein [Naegleria gruberi]
Length = 391
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 76/301 (25%), Positives = 138/301 (45%), Gaps = 6/301 (1%)
Query: 89 NFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL-ERCTRIHGG 147
N ++ D L+++ L LTSL I + A L L +LD+ + G
Sbjct: 53 NKKFKVDDETLQYIGELKQLTSLHIH---GIGIDNVWDIADLKQLTELDISDNKINSEGA 109
Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 207
V + L L+I N D K +S L L L +S +++ + + Y+ + LT
Sbjct: 110 RVISESFKHLTKLDI--SNNTIDVGTKYISQLKQLTYLDVSNNEIEEEDVKYIGNMNGLT 167
Query: 208 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 267
L+++ + +S L + L++ + D+G + S++ L LN+GFN I
Sbjct: 168 SLSIQYNHIGNIGAQYISGLKQITTLSIYSGDIGDEGAKYISEMKQLTNLNIGFNNINIR 227
Query: 268 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 327
+H+ L L L++ + G GL +T L L L D+++ S G++++S + L
Sbjct: 228 GAIHISKLKQLTELSISANNFGSGGLKYITQLKQLTKLYCCDSEIDSEGVKYISEMKQLT 287
Query: 328 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 387
++LS+ I+ ++ L L L L + + + G ++ L LTHLD+ ++D
Sbjct: 288 DVDLSYNNINSEGVKYLNKLKKLTKLYIGGNDLGNKGAMYISRLNQLTHLDICRNNVSDE 347
Query: 388 G 388
G
Sbjct: 348 G 348
>gi|301617436|ref|XP_002938142.1| PREDICTED: f-box/LRR-repeat protein 14-like [Xenopus (Silurana)
tropicalis]
Length = 400
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 104/331 (31%), Positives = 173/331 (52%), Gaps = 56/331 (16%)
Query: 61 SVDLSG-SDVTDSGLIH--LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
S++LSG ++TD+GL H +++ +L+SL+ + C Q++D L +
Sbjct: 94 SLNLSGCYNLTDNGLGHAFVQEIGSLRSLNLSLCKQVTDSSLGRI--------------- 138
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
AQ +K L L+L CT I G L+ GL L+SLN++ C ++D +
Sbjct: 139 ---AQYLKG------LQVLELGGCTNITNTGLLLIAWGLHGLKSLNLRSCRHVSDVGIGH 189
Query: 176 LSGLTN--------LKSLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGCP-VTAACLDSL 224
L+G+T L+ L + C K+TD + ++ +GLQ L +LNL C ++ A L L
Sbjct: 190 LAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLQGLRVLNLSFCGGISDAGLLHL 249
Query: 225 SALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLE 279
S +G L LNL C +SD G + +GSL++ L++ F +++ D+ L ++ +GL L+
Sbjct: 250 SHMGGLRSLNLRSCDNISDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLYGLK 308
Query: 280 SLNLDSCGIGDEGL----VNLTGLCNL---KCLELSDTQVGSSGLRHLSGLTNLESINLS 332
SL+L SC I D+G+ + GL L +C+ ++D + HLS LT ++
Sbjct: 309 SLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIA-EHLSQLTGIDLYGC- 366
Query: 333 FTGISDGSLRKLAGLSSLKSLNLDARQITDT 363
T I+ L ++ L LK LNL Q+T++
Sbjct: 367 -TRITKKGLERITQLPCLKVLNLGLWQMTES 396
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 97/288 (33%), Positives = 145/288 (50%), Gaps = 50/288 (17%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKP--LSGLTNLKSLQIS-CSKVTDSGIA----YLKGL 203
++GL +ESLN+ C +TD+ + + + +L+SL +S C +VTDS + YLKGL
Sbjct: 86 IQGLPDIESLNLSGCYNLTDNGLGHAFVQEIGSLRSLNLSLCKQVTDSSLGRIAQYLKGL 145
Query: 204 QKLTL-----------------------LNLEGCPVTA-------ACLDSLSALG--SLF 231
Q L L LNL C + A + +A G L
Sbjct: 146 QVLELGGCTNITNTGLLLIAWGLHGLKSLNLRSCRHVSDVGIGHLAGMTRSAAEGCLGLE 205
Query: 232 YLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-G 287
L L CQ L+D + S+ + L+VLNL F I+D L+HL + L SLNL SC
Sbjct: 206 QLTLQDCQKLTDLSLKHISRGLQGLRVLNLSFCGGISDAGLLHLSHMGGLRSLNLRSCDN 265
Query: 288 IGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLS-GLTNLESINLSFTGISDGSL-RK 343
I D G+++L G L L++S +VG L +++ GL L+S++L ISD + R
Sbjct: 266 ISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLYGLKSLSLCSCHISDDGINRM 325
Query: 344 LAGLSSLKSLNL-DARQITDTGLAALTS-LTGLTHLDLFG-ARITDSG 388
+ + L++LN+ +ITD GL + L+ LT +DL+G RIT G
Sbjct: 326 VRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKKG 373
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 84/290 (28%), Positives = 140/290 (48%), Gaps = 41/290 (14%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEH 101
V D + IA L ++L G +++T++GL+ + L+SL+ C +SD G+ H
Sbjct: 130 VTDSSLGRIAQYLKGLQVLELGGCTNITNTGLLLIAWGLHGLKSLNLRSCRHVSDVGIGH 189
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL------KGLM 155
L G++ A G + L +L L+ C + L +L +GL
Sbjct: 190 LAGMTR-----------------SAAEGCLGLEQLTLQDCQK----LTDLSLKHISRGLQ 228
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK-GLQKLTLLNLEG 213
L LN+ +C I+D+ + LS + L+SL + SC ++D+GI +L G +L+ L++
Sbjct: 229 GLRVLNLSFCGGISDAGLLHLSHMGGLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSF 288
Query: 214 CPVTAACLDSLSALGSLFY----LNLNRCQLSDDGCEKFSK-IGSLKVLNLG-FNEITDE 267
C SL+ + Y L+L C +SDDG + + + L+ LN+G ITD+
Sbjct: 289 CDKVGD--QSLAYIAQGLYGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDK 346
Query: 268 CLVHL-KGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQVGSS 315
L + + L+ L ++L C I +GL +T L LK L L Q+ S
Sbjct: 347 GLELIAEHLSQLTGIDLYGCTRITKKGLERITQLPCLKVLNLGLWQMTES 396
>gi|290994554|ref|XP_002679897.1| leucine rich repeat domain protein [Naegleria gruberi]
gi|284093515|gb|EFC47153.1| leucine rich repeat domain protein [Naegleria gruberi]
Length = 331
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 79/287 (27%), Positives = 137/287 (47%), Gaps = 10/287 (3%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQS---LDFNFCIQISDGGLE 100
++ ++++VI + LS++ ++TDS ++ L+S L F ++ D
Sbjct: 46 ISKQFLNVINERAK--LSIEFK--NITDSKFNAVRKSQFLESFTSLKFISVEEVFDIKYL 101
Query: 101 HLRGL-SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 159
L GL NLT L N I QG K + L L ++ G + G+ KL
Sbjct: 102 ELVGLMRNLTKLCVG-GNEIGLQGAKIVSEFKQLTSLYIDSSQIGTEGAKLISGMTKLTE 160
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
L+I N + K +SG+ +L L IS S + GI + ++ LT L++ G + A
Sbjct: 161 LDIS-ANYLCAEGAKSISGMDHLTFLNISSSNIDQEGIKSISEMKNLTKLDICGNNLGAE 219
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
S+S + L YL L +G S++ L LN+ +NEI DE + + NL
Sbjct: 220 GAKSISQMKQLTYLKAYTNSLRSEGAIFISELDKLTTLNICYNEIGDEGAKAISQMPNLT 279
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 326
L +D IG EG +++ + L+ L++S ++G G++++ G+ +L
Sbjct: 280 DLRIDGNRIGPEGAKSISEMKQLRLLDISFNRIGEEGVKYVKGMKHL 326
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 87/180 (48%)
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
K +SG+T L L IS + + G + G+ LT LN+ + + S+S + +L L
Sbjct: 150 KLISGMTKLTELDISANYLCAEGAKSISGMDHLTFLNISSSNIDQEGIKSISEMKNLTKL 209
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
++ L +G + S++ L L N + E + + L L +LN+ IGDEG
Sbjct: 210 DICGNNLGAEGAKSISQMKQLTYLKAYTNSLRSEGAIFISELDKLTTLNICYNEIGDEGA 269
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
++ + NL L + ++G G + +S + L +++SF I + ++ + G+ L L
Sbjct: 270 KAISQMPNLTDLRIDGNRIGPEGAKSISEMKQLRLLDISFNRIGEEGVKYVKGMKHLTRL 329
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 97/222 (43%), Gaps = 28/222 (12%)
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
K +S L SL I S++ G + G+ KLT L++ + A S+S + L +L
Sbjct: 126 KIVSEFKQLTSLYIDSSQIGTEGAKLISGMTKLTELDISANYLCAEGAKSISGMDHLTFL 185
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG--IGDE 291
N++ + +G + S +K LT LD CG +G E
Sbjct: 186 NISSSNIDQEGIKSIS---------------------EMKNLT-----KLDICGNNLGAE 219
Query: 292 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 351
G +++ + L L+ + S G +S L L ++N+ + I D + ++ + +L
Sbjct: 220 GAKSISQMKQLTYLKAYTNSLRSEGAIFISELDKLTTLNICYNEIGDEGAKAISQMPNLT 279
Query: 352 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
L +D +I G +++ + L LD+ RI + G Y++
Sbjct: 280 DLRIDGNRIGPEGAKSISEMKQLRLLDISFNRIGEEGVKYVK 321
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 68/261 (26%), Positives = 123/261 (47%), Gaps = 10/261 (3%)
Query: 135 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ----ISCS 190
K L +C+ I +N+ + + L+I++ N ITDS + L+S IS
Sbjct: 37 KFILYKCSLISKQFLNV--INERAKLSIEFKN-ITDSKFNAVRKSQFLESFTSLKFISVE 93
Query: 191 KVTDSGIAYLKGLQK-LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 249
+V D L GL + LT L + G + +S L L ++ Q+ +G + S
Sbjct: 94 EVFDIKYLELVGLMRNLTKLCVGGNEIGLQGAKIVSEFKQLTSLYIDSSQIGTEGAKLIS 153
Query: 250 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 309
+ L L++ N + E + G+ +L LN+ S I EG+ +++ + NL L++
Sbjct: 154 GMTKLTELDISANYLCAEGAKSISGMDHLTFLNISSSNIDQEGIKSISEMKNLTKLDICG 213
Query: 310 TQVGSSGLRHLSGLTNLESINLSFTGI-SDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 368
+G+ G + +S + L + + S+G++ ++ L L +LN+ +I D G A+
Sbjct: 214 NNLGAEGAKSISQMKQLTYLKAYTNSLRSEGAIF-ISELDKLTTLNICYNEIGDEGAKAI 272
Query: 369 TSLTGLTHLDLFGARITDSGA 389
+ + LT L + G RI GA
Sbjct: 273 SQMPNLTDLRIDGNRIGPEGA 293
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 68/134 (50%)
Query: 259 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 318
+G NEI + + L SL +DS IG EG ++G+ L L++S + + G +
Sbjct: 115 VGGNEIGLQGAKIVSEFKQLTSLYIDSSQIGTEGAKLISGMTKLTELDISANYLCAEGAK 174
Query: 319 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 378
+SG+ +L +N+S + I ++ ++ + +L L++ + G +++ + LT+L
Sbjct: 175 SISGMDHLTFLNISSSNIDQEGIKSISEMKNLTKLDICGNNLGAEGAKSISQMKQLTYLK 234
Query: 379 LFGARITDSGAAYL 392
+ + GA ++
Sbjct: 235 AYTNSLRSEGAIFI 248
>gi|261334051|emb|CBH17045.1| T. brucei spp.-specific protein [Trypanosoma brucei gambiense
DAL972]
Length = 1399
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 91/319 (28%), Positives = 151/319 (47%), Gaps = 38/319 (11%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
LS + +TD + H C L +LD +FC ++ D + LSN+T+L
Sbjct: 590 LSNTHITDRDISHFSKCKELVTLDLSFCDELFD-----ITSLSNITTLE----------- 633
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL-SGLTNL 182
L+L+ C++I GL L L +L LN+K + +T+S + L +G + +
Sbjct: 634 -----------DLNLDNCSKIRKGLSVLGELPRLRVLNVKGVH-LTNSVIGSLGNGKSFV 681
Query: 183 KSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
K + +C ++D + +L L L LNL C + + +L L L L+L ++ +
Sbjct: 682 KLILDNCKGLSD--VTFLSSLSTLKELNLHHCDAVTSGIGTLGRLLQLRVLDLGWTKIDN 739
Query: 243 DGCEKFSKIGS-LKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
+ E S L LNL EIT + + L LE LN+D+C G L
Sbjct: 740 NSLEDICACSSPLVSLNLSHCKEITS--ISAIASLNALEKLNIDNCCHVTSGWNVFGTLH 797
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDARQ 359
L+ LS+T++ +RH+S +L ++NL+F I+D + L+ ++ L+ LN+D
Sbjct: 798 QLRVAVLSNTRINDENIRHISECKSLNTLNLAFCNDITD--ITALSNITMLRELNIDWCF 855
Query: 360 ITDTGLAALTSLTGLTHLD 378
+ G+ AL L L LD
Sbjct: 856 NIEKGVEALGKLPKLRELD 874
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 74/274 (27%), Positives = 118/274 (43%), Gaps = 46/274 (16%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAI---- 119
LS + + D + H+ +C +L +L+ FC I+D + LSN+T L R N
Sbjct: 804 LSNTRINDENIRHISECKSLNTLNLAFCNDITD-----ITALSNITML--RELNIDWCFN 856
Query: 120 TAQGMKAFAGLINLVKLDLERC------TRIHGGLVNLKGLMKLESLNIKWCNCI----- 168
+G++A L L +LD ++C + + K L+KL N + C+
Sbjct: 857 IEKGVEALGKLPKLRELDAKKCGTSVRWMQQYPYNTLFKSLVKLNLENGRESFCVGTLSS 916
Query: 169 -------------TDSDMKPLSGLTNLKSLQISCSKVTD---SGIAYLKGLQKLTLLNLE 212
+ P+S L L+ L + +V D GI+ K LQ L N+
Sbjct: 917 TAIVEELLLGRACEPYHLPPISSLRRLRVLNLDDGRVCDIWLEGISQSKSLQSL---NVS 973
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
C + +LS+L +L LN+N C G E F + L+V L +T+E + L
Sbjct: 974 NCNYITD-ISALSSLSTLEELNVNCCDRIRKGWEAFEALTRLRVATLSVTWVTNEGIRLL 1032
Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 306
G NL +L L C + N+ + N+K LE
Sbjct: 1033 SGCKNLRNLELYCC----RDVSNIEPINNIKSLE 1062
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 92/338 (27%), Positives = 156/338 (46%), Gaps = 36/338 (10%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ ++L +DL+ +++ DS + + C+ L L + C I D + L+ L L+
Sbjct: 225 SRLTNLKCLDLNSTNIDDSCIGEISACAKLSKLSVSECNNIIDAT--PISQLAALEELNL 282
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
N IT +G+ L+ L LDL + L +L LE LN+ +C I +++
Sbjct: 283 NSNCHIT-KGIGTLGMLLRLRMLDLSGVSVEDNFLKDLCDCGPLERLNLSYC--IQLTNI 339
Query: 174 KPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
PLS T ++ L ++ C ++T GI + L KL +L+++G ++ LDS+ GSL
Sbjct: 340 NPLSNATAIEELNLNGCRRIT-RGIGVVWALPKLRVLHMKGVHLSEPSLDSVGTGGSLVK 398
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
++L+ C GF ++T L + LE LN+ C G
Sbjct: 399 VSLDNCA--------------------GFGDMT-----LLSSIVTLEELNIQKCADIISG 433
Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLK 351
+ L L L+ L + + + S + +L + L S TG+S+ + LA + +L+
Sbjct: 434 VCCLGTLPYLRVLNIKEAHISSLDFTGIGASKSLLQLTLESITGLSN--VEALANILTLE 491
Query: 352 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 389
L+L D G+ L +L L LDL G TDS +
Sbjct: 492 KLSLLGCNGIDAGIGCLGNLPQLKVLDLSGTN-TDSDS 528
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 80/310 (25%), Positives = 144/310 (46%), Gaps = 20/310 (6%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
++ D LE + +L SL+ N IT + A + L L +L++ C RI G +
Sbjct: 952 RVCDIWLEGISQSKSLQSLNVSNCNYIT--DISALSSLSTLEELNVNCCDRIRKGWEAFE 1009
Query: 153 GLMKLE--SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
L +L +L++ W +T+ ++ LSG NL++L++ C + S I + ++ L L
Sbjct: 1010 ALTRLRVATLSVTW---VTNEGIRLLSGCKNLRNLELYCCRDV-SNIEPINNIKSLEELT 1065
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL-GFNEITDECL 269
++ C L + L L L L + Q + + SL L + G E+ D
Sbjct: 1066 IQNCHNINEGLLKVGMLPRLRVLVLRKLQSTYFSLSSLGESKSLVKLTIEGPEELCD--- 1122
Query: 270 VHLKGLTNLESLNLDSCGIGDEGLVNLTG----LCNLKCLELSDTQVGSSGLRHLSGLTN 325
+K ++N+ +L GD L+N G L L L LS +G++ + + +
Sbjct: 1123 --IKLISNIATLKELKIAHGDR-LLNDVGDLGKLPWLHVLTLSHFNMGNTCFESVCKIRS 1179
Query: 326 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
L+S++++ + + ++ L++L+ LNL +G ALT+L L L+L R+T
Sbjct: 1180 LKSLDITHS-FELPDIYHISNLTALEELNLSGCYHIISGWEALTALPRLRVLNLSSTRVT 1238
Query: 386 DSGAAYLRSK 395
S Y S+
Sbjct: 1239 TSYGGYYISR 1248
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 93/332 (28%), Positives = 144/332 (43%), Gaps = 39/332 (11%)
Query: 65 SGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM 124
SG V D+ L L DC L+ L+ ++CIQ+++ + LSN T++
Sbjct: 307 SGVSVEDNFLKDLCDCGPLERLNLSYCIQLTN-----INPLSNATAIE------------ 349
Query: 125 KAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
+L+L C RI G+ + L KL L++K + S +G + +K
Sbjct: 350 ----------ELNLNGCRRITRGIGVVWALPKLRVLHMKGVHLSEPSLDSVGTGGSLVKV 399
Query: 185 LQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 244
+C+ D + L + L LN++ C A + + LG+L YL + + +
Sbjct: 400 SLDNCAGFGD--MTLLSSIVTLEELNIQKC---ADIISGVCCLGTLPYLRVLNIKEAHIS 454
Query: 245 CEKFSKIGSLK-VLNLGFNEITDECLVHLKGLTN---LESLNLDSCGIGDEGLVNLTGLC 300
F+ IG+ K +L L IT L +++ L N LE L+L C D G+ L L
Sbjct: 455 SLDFTGIGASKSLLQLTLESITG--LSNVEALANILTLEKLSLLGCNGIDAGIGCLGNLP 512
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
LK L+LS T S LR L + S+NLS S+ ++ L +L LNL
Sbjct: 513 QLKVLDLSGTNTDSDSLRGLCVSQTIVSLNLSHCW-KVTSVFHISALETLNELNLSDCIR 571
Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
+ G AL L L L ITD ++
Sbjct: 572 INAGWEALEKLQQLHVAILSNTHITDRDISHF 603
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 91/286 (31%), Positives = 132/286 (46%), Gaps = 49/286 (17%)
Query: 133 LVKLDLERCTRIHGGLVNLKGL---MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISC 189
L++L LE T GL N++ L + LE L++ CN I D+ + L L LK L +S
Sbjct: 467 LLQLTLESIT----GLSNVEALANILTLEKLSLLGCNGI-DAGIGCLGNLPQLKVLDLSG 521
Query: 190 SKVTDSGIAYLKGL---QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE 246
+ TDS L+GL Q + LNL C + +SAL +L LNL+ C + G E
Sbjct: 522 TN-TDSD--SLRGLCVSQTIVSLNLSHCWKVTSVFH-ISALETLNELNLSDCIRINAGWE 577
Query: 247 KFSKIGSLKVLNLGFNEITDECLVH-----------------------LKGLTNLESLNL 283
K+ L V L ITD + H L +T LE LNL
Sbjct: 578 ALEKLQQLHVAILSNTHITDRDISHFSKCKELVTLDLSFCDELFDITSLSNITTLEDLNL 637
Query: 284 DSCGIGDEGLVNLTGLC-----NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
D+C +GL L L N+K + L+++ +GS G +G + ++ I + G+SD
Sbjct: 638 DNCSKIRKGLSVLGELPRLRVLNVKGVHLTNSVIGSLG----NGKSFVKLILDNCKGLSD 693
Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 384
+ L+ LS+LK LNL +G+ L L L LDL +I
Sbjct: 694 VTF--LSSLSTLKELNLHHCDAVTSGIGTLGRLLQLRVLDLGWTKI 737
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 87/171 (50%), Gaps = 10/171 (5%)
Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS-GIAYLKGLQKL 206
+ ++ L LE LN+ C I S + L+ L L+ L +S ++VT S G Y+ + L
Sbjct: 1194 IYHISNLTALEELNLSGCYHII-SGWEALTALPRLRVLNLSSTRVTTSYGGYYISRCKSL 1252
Query: 207 TLLNLEGCPVT-AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265
LNLE C +T A+CL + + +L L++ +C+ G + L++LNL + IT
Sbjct: 1253 ITLNLESCDMTDASCL---ADIKTLEELHIGKCEELTRGFSALFTLPQLRILNLMDSLIT 1309
Query: 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 316
DE L ++ +E LNL C + L ++T + +K ++ D S G
Sbjct: 1310 DEDLREIQLSHTIEDLNLSYC----KELNDITPVRRIKSIKKMDLHRSSEG 1356
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 97/384 (25%), Positives = 156/384 (40%), Gaps = 81/384 (21%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSD-VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
V D W++ I SQ SL S+++S + +TD + L S L+ L+ N C +I G E
Sbjct: 953 VCDIWLEGI-SQSKSLQSLNVSNCNYITD--ISALSSLSTLEELNVNCCDRIRKG-WEAF 1008
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
L+ L + +T +G++ +G NL L+L C R + + + LE L I
Sbjct: 1009 EALTRLRVATLSVT-WVTNEGIRLLSGCKNLRNLEL-YCCRDVSNIEPINNIKSLEELTI 1066
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG----CPVTA 218
+ C+ I + +K + L L+ L + + T ++ L + L L +EG C +
Sbjct: 1067 QNCHNINEGLLK-VGMLPRLRVLVLRKLQSTYFSLSSLGESKSLVKLTIEGPEELCDIKL 1125
Query: 219 AC----------------LDSLSALGSLFYLN---LNRCQLSDDGCEKFSKIGSLKVLNL 259
L+ + LG L +L+ L+ + + E KI SLK L++
Sbjct: 1126 ISNIATLKELKIAHGDRLLNDVGDLGKLPWLHVLTLSHFNMGNTCFESVCKIRSLKSLDI 1185
Query: 260 GFN-EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS--- 315
+ E+ D + H+ LT LE LNL C G LT L L+ L LS T+V +S
Sbjct: 1186 THSFELPD--IYHISNLTALEELNLSGCYHIISGWEALTALPRLRVLNLSSTRVTTSYGG 1243
Query: 316 --------------------------------------------GLRHLSGLTNLESINL 331
G L L L +NL
Sbjct: 1244 YYISRCKSLITLNLESCDMTDASCLADIKTLEELHIGKCEELTRGFSALFTLPQLRILNL 1303
Query: 332 SFTGISDGSLRKLAGLSSLKSLNL 355
+ I+D LR++ +++ LNL
Sbjct: 1304 MDSLITDEDLREIQLSHTIEDLNL 1327
>gi|71754651|ref|XP_828240.1| hypothetical protein [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|70833626|gb|EAN79128.1| hypothetical protein Tb11.53.0001 [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 1399
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 91/319 (28%), Positives = 151/319 (47%), Gaps = 38/319 (11%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
LS + +TD + H C L +LD +FC ++ D + LSN+T+L
Sbjct: 590 LSNTHITDRDISHFSKCKELVTLDLSFCDELFD-----ITSLSNITTLE----------- 633
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL-SGLTNL 182
L+L+ C++I GL L L +L LN+K + +T+S + L +G + +
Sbjct: 634 -----------DLNLDNCSKIRKGLSVLGELPRLRVLNVKGVH-LTNSVIGSLGNGKSFV 681
Query: 183 KSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
K + +C ++D + +L L L LNL C + + +L L L L+L ++ +
Sbjct: 682 KLILDNCKGLSD--VTFLSSLSTLKELNLHHCDAVTSGIGTLGRLLQLRVLDLGWTKIDN 739
Query: 243 DGCEKFSKIGS-LKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
+ E S L LNL EIT + + L LE LN+D+C G L
Sbjct: 740 NSLEDICACSSPLVSLNLSHCKEITS--ISAIASLNALEKLNIDNCCHVTSGWNVFGTLH 797
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDARQ 359
L+ LS+T++ +RH+S +L ++NL+F I+D + L+ ++ L+ LN+D
Sbjct: 798 QLRVAVLSNTRINDENIRHISECKSLNTLNLAFCNDITD--ITALSNITMLRELNIDWCF 855
Query: 360 ITDTGLAALTSLTGLTHLD 378
+ G+ AL L L LD
Sbjct: 856 NIEKGVEALGKLPKLRELD 874
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 75/274 (27%), Positives = 119/274 (43%), Gaps = 46/274 (16%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAI---- 119
LS + + D + H+ +C +L +L+ FC I+D + LSN+T L R N
Sbjct: 804 LSNTRINDENIRHISECKSLNTLNLAFCNDITD-----ITALSNITML--RELNIDWCFN 856
Query: 120 TAQGMKAFAGLINLVKLDLERC------TRIHGGLVNLKGLMKLESLNIKWCNCI----- 168
+G++A L L +LD ++C + + K L+KL N + C+
Sbjct: 857 IEKGVEALGKLPKLRELDAKKCGTSVRWMQQYPYNTLFKSLVKLNLENGRESFCVGTLSS 916
Query: 169 -------------TDSDMKPLSGLTNLKSLQISCSKVTD---SGIAYLKGLQKLTLLNLE 212
+ P+S L L+ L + +V D GI+ K LQ L N+
Sbjct: 917 TAIVEELLLGRACEPYHLPPISSLRRLRVLNLDDGRVCDIWLEGISQSKSLQSL---NVS 973
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
C + +LS+L +L LN+N C G E F + L+V L +T+E + L
Sbjct: 974 NCNYITD-ISALSSLSTLEELNVNCCDRIRKGWEAFEALTRLRVATLSVTWVTNEGIRLL 1032
Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 306
G NL +L L CG + N+ + N+K LE
Sbjct: 1033 SGCKNLRNLELYCCG----DVSNIEPINNIKSLE 1062
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 96/333 (28%), Positives = 144/333 (43%), Gaps = 41/333 (12%)
Query: 65 SGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM 124
SG V D+ L L DC L+ L+ + CIQ++D + LSN T++
Sbjct: 307 SGVSVEDNFLKDLCDCGPLERLNLSHCIQLTD-----INPLSNATAIQ------------ 349
Query: 125 KAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
+L+L RC RI G+ + L KL L++K + +++S + + +L
Sbjct: 350 ----------ELNLNRCHRITQGISVVWELPKLRVLHMKDMH-LSESSLDSVGTSESLVK 398
Query: 185 LQI-SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
L I +C+ D + L L LN++ C + + L L L LN+ +S
Sbjct: 399 LSIENCAGFGD--MTLLSSFVALEELNIQKCADIISGVGCLGTLPYLRVLNIKEAHISSI 456
Query: 244 GCEKFSKIGSLK-VLNLGFNEITDECLVHLKGLTN---LESLNLDSCGIGDEGLVNLTGL 299
G F+ IG+ K +L L T L ++ L N LE L+L C D G+ L L
Sbjct: 457 G---FTGIGASKSLLQLTIESTTG--LSDVEALANILTLEKLSLLGCNGIDAGIGCLGNL 511
Query: 300 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 359
LK L+LS T S LR L + S+NLS S+ ++ L +L LNL
Sbjct: 512 PQLKVLDLSGTNTDSDSLRGLCVSQTIVSLNLSHCW-KVTSVFHISALETLNELNLSDCI 570
Query: 360 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
+ G AL L L L ITD ++
Sbjct: 571 RINAGWEALEKLQQLHVAILSNTHITDRDISHF 603
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 88/335 (26%), Positives = 146/335 (43%), Gaps = 60/335 (17%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
+NL+ L+FN+ I D +E + + L+ LS N++T + + L L +L+L
Sbjct: 228 TNLKCLEFNY-TSIDDSCIEEICECATLSKLSVSECNSLT--DVTPISQLAALEELNLSN 284
Query: 141 CTRIHGG------------------------LVNLKGLMKLESLNIKWCNCITDSDMKPL 176
C I G L +L LE LN+ +CI +D+ PL
Sbjct: 285 CYHITKGIGALVRLLRLRALDLSGVSVEDNFLKDLCDCGPLERLNLS--HCIQLTDINPL 342
Query: 177 SGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
S T ++ L ++ C ++T GI+ + L KL +L+++ ++ + LDS+ SL L++
Sbjct: 343 SNATAIQELNLNRCHRITQ-GISVVWELPKLRVLHMKDMHLSESSLDSVGTSESLVKLSI 401
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
C GF ++T L LE LN+ C G+
Sbjct: 402 ENCA--------------------GFGDMT-----LLSSFVALEELNIQKCADIISGVGC 436
Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLN 354
L L L+ L + + + S G + +L + + S TG+SD + LA + +L+ L+
Sbjct: 437 LGTLPYLRVLNIKEAHISSIGFTGIGASKSLLQLTIESTTGLSD--VEALANILTLEKLS 494
Query: 355 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 389
L D G+ L +L L LDL G TDS +
Sbjct: 495 LLGCNGIDAGIGCLGNLPQLKVLDLSGTN-TDSDS 528
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 80/310 (25%), Positives = 143/310 (46%), Gaps = 20/310 (6%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
++ D LE + +L SL+ N IT + A + L L +L++ C RI G +
Sbjct: 952 RVCDIWLEGISQSKSLQSLNVSNCNYIT--DISALSSLSTLEELNVNCCDRIRKGWEAFE 1009
Query: 153 GLMKLE--SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
L +L +L++ W +T+ ++ LSG NL++L++ C S I + ++ L L
Sbjct: 1010 ALTRLRVATLSVTW---VTNEGIRLLSGCKNLRNLELYCCGDV-SNIEPINNIKSLEELT 1065
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL-GFNEITDECL 269
++ C L + L L L L + Q + + SL L + G E+ D
Sbjct: 1066 IQNCHNINEGLLKVGMLPRLRVLVLRKLQSTYFSLSSLGESKSLVKLTIEGPEELCD--- 1122
Query: 270 VHLKGLTNLESLNLDSCGIGDEGLVNLTG----LCNLKCLELSDTQVGSSGLRHLSGLTN 325
+K ++N+ +L GD L+N G L L L LS +G++ + + +
Sbjct: 1123 --IKLISNIATLKELKIAHGDR-LLNDVGDLGKLPWLHVLTLSHFNMGNTCFESVCKIRS 1179
Query: 326 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
L+S++++ + + ++ L++L+ LNL +G ALT+L L L+L R+T
Sbjct: 1180 LKSLDITHS-FELPDIYHISNLTALEELNLSGCYHIISGWEALTALPRLRVLNLSSTRVT 1238
Query: 386 DSGAAYLRSK 395
S Y S+
Sbjct: 1239 TSYGGYYISR 1248
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 89/297 (29%), Positives = 135/297 (45%), Gaps = 43/297 (14%)
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
I++ G +L++L +E T + + L ++ LE L++ CN I D+ + L
Sbjct: 453 ISSIGFTGIGASKSLLQLTIESTTGL-SDVEALANILTLEKLSLLGCNGI-DAGIGCLGN 510
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGL---QKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
L LK L +S + TDS L+GL Q + LNL C + +SAL +L LNL
Sbjct: 511 LPQLKVLDLSGTN-TDSD--SLRGLCVSQTIVSLNLSHCWKVTSVFH-ISALETLNELNL 566
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH-----------------------L 272
+ C + G E K+ L V L ITD + H L
Sbjct: 567 SDCIRINAGWEALEKLQQLHVAILSNTHITDRDISHFSKCKELVTLDLSFCDELFDITSL 626
Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTGLC-----NLKCLELSDTQVGSSGLRHLSGLTNLE 327
+T LE LNLD+C +GL L L N+K + L+++ +GS G +G + ++
Sbjct: 627 SNITTLEDLNLDNCSKIRKGLSVLGELPRLRVLNVKGVHLTNSVIGSLG----NGKSFVK 682
Query: 328 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 384
I + G+SD + L+ LS+LK LNL +G+ L L L LDL +I
Sbjct: 683 LILDNCKGLSDVTF--LSSLSTLKELNLHHCDAVTSGIGTLGRLLQLRVLDLGWTKI 737
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 85/171 (49%), Gaps = 10/171 (5%)
Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS-GIAYLKGLQKL 206
+ ++ L LE LN+ C I S + L+ L L+ L +S ++VT S G Y+ + L
Sbjct: 1194 IYHISNLTALEELNLSGCYHII-SGWEALTALPRLRVLNLSSTRVTTSYGGYYISRCKSL 1252
Query: 207 TLLNLEGCPVT-AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265
LNLE C +T A+CL + L L ++ +C+ G + L++LNL + IT
Sbjct: 1253 ITLNLESCDMTDASCLADIKTLEEL---HIGKCEELTRGFSALFTLPQLRILNLMDSLIT 1309
Query: 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 316
DE L ++ +E LNL C + L ++T + +K ++ D S G
Sbjct: 1310 DEDLREIQLSHTIEDLNLSYC----KELNDITPVRRIKSIKKMDLHRSSEG 1356
Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 96/384 (25%), Positives = 156/384 (40%), Gaps = 81/384 (21%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSD-VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
V D W++ I SQ SL S+++S + +TD + L S L+ L+ N C +I G E
Sbjct: 953 VCDIWLEGI-SQSKSLQSLNVSNCNYITD--ISALSSLSTLEELNVNCCDRIRKG-WEAF 1008
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
L+ L + +T +G++ +G NL L+L C + + + + LE L I
Sbjct: 1009 EALTRLRVATLSVT-WVTNEGIRLLSGCKNLRNLELYCCGDV-SNIEPINNIKSLEELTI 1066
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG----CPVTA 218
+ C+ I + +K + L L+ L + + T ++ L + L L +EG C +
Sbjct: 1067 QNCHNINEGLLK-VGMLPRLRVLVLRKLQSTYFSLSSLGESKSLVKLTIEGPEELCDIKL 1125
Query: 219 AC----------------LDSLSALGSLFYLN---LNRCQLSDDGCEKFSKIGSLKVLNL 259
L+ + LG L +L+ L+ + + E KI SLK L++
Sbjct: 1126 ISNIATLKELKIAHGDRLLNDVGDLGKLPWLHVLTLSHFNMGNTCFESVCKIRSLKSLDI 1185
Query: 260 GFN-EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS--- 315
+ E+ D + H+ LT LE LNL C G LT L L+ L LS T+V +S
Sbjct: 1186 THSFELPD--IYHISNLTALEELNLSGCYHIISGWEALTALPRLRVLNLSSTRVTTSYGG 1243
Query: 316 --------------------------------------------GLRHLSGLTNLESINL 331
G L L L +NL
Sbjct: 1244 YYISRCKSLITLNLESCDMTDASCLADIKTLEELHIGKCEELTRGFSALFTLPQLRILNL 1303
Query: 332 SFTGISDGSLRKLAGLSSLKSLNL 355
+ I+D LR++ +++ LNL
Sbjct: 1304 MDSLITDEDLREIQLSHTIEDLNL 1327
>gi|71912406|gb|AAZ53235.1| InlA [Listeria monocytogenes]
Length = 800
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 109/333 (32%), Positives = 169/333 (50%), Gaps = 36/333 (10%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
L GL L LEL++ Q+ + +S L NL + L F ISD + ++ L+ L+ L
Sbjct: 311 SPLAGLTALTSLELNENQL--EDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRL 366
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
+++D +++L SLT + L +I+D
Sbjct: 367 FFYNNKVSD--VSSLASLTNINWLSAGHNQISD 397
>gi|344169683|emb|CCA82044.1| putative leucine-rich-repeat type III effector protein (GALA1-like)
[blood disease bacterium R229]
Length = 590
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 74/231 (32%), Positives = 116/231 (50%), Gaps = 5/231 (2%)
Query: 168 ITDSDMKPLSGLTNLKSLQIS--CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
+TD D+K L +LK+L +S +++T GIA+L L L LN+ + A L+
Sbjct: 132 VTDDDLKGLPA--SLKALDLSDCRAQITSEGIAHLSKL-PLVRLNVSHNRIDAEGARLLA 188
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
A+ +L L+++ + DG + + +L +LN+G N I D L T L SLN +
Sbjct: 189 AMPTLTELDISHNDIRADGAQALADSATLTLLNVGNNRIGDRGAQALAANTKLTSLNASA 248
Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 345
GIG G+ L L L+LS T + + L+ T L S+N+ + + D R LA
Sbjct: 249 NGIGSAGVQALAANATLAALDLSCTPIDEESAQALARNTTLTSLNVRLSRLGDAGARALA 308
Query: 346 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRSKF 396
++L SLN+ +I G AL + T LT LD+ G ++ GA L +
Sbjct: 309 ATTTLTSLNVSLNEIGPEGAKALANNTSLTSLDIGGNKVGVDGAQALATSM 359
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 99/337 (29%), Positives = 152/337 (45%), Gaps = 7/337 (2%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC-IQISDGGLEHLRGLSNLTSLSFRR 115
++L + LSG DVTD L L ++L++LD + C QI+ G+ HL L L L+
Sbjct: 121 AALEKLTLSG-DVTDDDLKGLP--ASLKALDLSDCRAQITSEGIAHLSKLP-LVRLNVSH 176
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
N I A+G + A + L +LD+ G L L LN+ N I D +
Sbjct: 177 NR-IDAEGARLLAAMPTLTELDISHNDIRADGAQALADSATLTLLNVG-NNRIGDRGAQA 234
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
L+ T L SL S + + +G+ L L L+L P+ +L+ +L LN+
Sbjct: 235 LAANTKLTSLNASANGIGSAGVQALAANATLAALDLSCTPIDEESAQALARNTTLTSLNV 294
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
+L D G + +L LN+ NEI E L T+L SL++ +G +G
Sbjct: 295 RLSRLGDAGARALAATTTLTSLNVSLNEIGPEGAKALANNTSLTSLDIGGNKVGVDGAQA 354
Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355
L L L + ++ +G + L+ T L S+++S G+ R +L SL +
Sbjct: 355 LATSMTLTSLVIHRNRIEVAGAQALANNTRLTSLDISDNGLGVWGARAFVDNETLTSLRI 414
Query: 356 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
I D G L T LT LD+ RI ++GA L
Sbjct: 415 ATNMIGDEGAKWLARNTTLTSLDIGENRIGETGAQAL 451
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 77/256 (30%), Positives = 123/256 (48%), Gaps = 11/256 (4%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L S+++S +++ G L + ++L SLD ++ G + L LTSL RN
Sbjct: 311 TTLTSLNVSLNEIGPEGAKALANNTSLTSLDIGGN-KVGVDGAQALATSMTLTSLVIHRN 369
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLM---KLESLNIKWCNCITDSD 172
I G +A A L LD+ +G G+ + + L SL I N I D
Sbjct: 370 R-IEVAGAQALANNTRLTSLDISD----NGLGVWGARAFVDNETLTSLRIA-TNMIGDEG 423
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
K L+ T L SL I +++ ++G L G KLT LN+ G + + L+ +L
Sbjct: 424 AKWLARNTTLTSLDIGENRIGETGAQALAGNTKLTSLNISGNAIGMMGVLRLARNTTLAA 483
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
LN++R Q+ G + ++ +L+ L + +NEI +E L G L SL++ C IGDEG
Sbjct: 484 LNVSRNQIGVAGAQDLARNTTLRSLVVNYNEIGNEGARALAGNKTLVSLSVVDCRIGDEG 543
Query: 293 LVNLTGLCNLKCLELS 308
L L L++S
Sbjct: 544 AHALAANTTLALLDVS 559
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 95/340 (27%), Positives = 155/340 (45%), Gaps = 11/340 (3%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+L +D+S +D+ G L D + L L+ +I D G + L + LTSL+ N
Sbjct: 191 PTLTELDISHNDIRADGAQALADSATLTLLNVGNN-RIGDRGAQALAANTKLTSLNASAN 249
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
I + G++A A L LDL CT I L L SLN++ + D+ +
Sbjct: 250 -GIGSAGVQALAANATLAALDLS-CTPIDEESAQALARNTTLTSLNVRLSR-LGDAGARA 306
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
L+ T L SL +S +++ G L LT L++ G V +L+ +L L +
Sbjct: 307 LAATTTLTSLNVSLNEIGPEGAKALANNTSLTSLDIGGNKVGVDGAQALATSMTLTSLVI 366
Query: 236 NRCQLSDDGCEKFS---KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
+R ++ G + + ++ SL + + G V + LT SL + + IGDEG
Sbjct: 367 HRNRIEVAGAQALANNTRLTSLDISDNGLGVWGARAFVDNETLT---SLRIATNMIGDEG 423
Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
L L L++ + ++G +G + L+G T L S+N+S I + +LA ++L +
Sbjct: 424 AKWLARNTTLTSLDIGENRIGETGAQALAGNTKLTSLNISGNAIGMMGVLRLARNTTLAA 483
Query: 353 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
LN+ QI G L T L L + I + GA L
Sbjct: 484 LNVSRNQIGVAGAQDLARNTTLRSLVVNYNEIGNEGARAL 523
>gi|167861908|gb|ACA05653.1| InlA [Listeria monocytogenes]
Length = 800
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 118/358 (32%), Positives = 171/358 (47%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QITD L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQITD--LTPLANLTRITQLGLNDQEWTNPPVNY 424
>gi|297171918|gb|ADI22905.1| hypothetical protein [uncultured Rhizobium sp. HF0500_35F13]
Length = 307
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 87/165 (52%), Gaps = 2/165 (1%)
Query: 198 AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 257
A + G++ +T+ +T L+ L LG++ YL+L+ + DDG +K+ L+VL
Sbjct: 41 AQVSGIRSVTV-RFTNSALTGKDLEPLGKLGTVHYLDLSDTSVGDDGMVHINKLEGLQVL 99
Query: 258 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 317
L EITD L L++L L +GD + L L L+++ QV SGL
Sbjct: 100 VLSGTEITDAGFSQLSNLSDLNQLTASEL-MGDGTMAALASATKLNFLDMTGGQVTDSGL 158
Query: 318 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
HLSG+ NL+ + LS T I+D L L ++ L+ L L+ +ITD
Sbjct: 159 SHLSGMKNLKRLTLSRTAITDKGLEHLQSITVLQDLQLNNTKITD 203
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 81/157 (51%), Gaps = 2/157 (1%)
Query: 157 LESLNIKWCN-CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215
+ S+ +++ N +T D++PL L + L +S + V D G+ ++ L+ L +L L G
Sbjct: 46 IRSVTVRFTNSALTGKDLEPLGKLGTVHYLDLSDTSVGDDGMVHINKLEGLQVLVLSGTE 105
Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 275
+T A LS L L L + + D + L L++ ++TD L HL G+
Sbjct: 106 ITDAGFSQLSNLSDLNQLTASEL-MGDGTMAALASATKLNFLDMTGGQVTDSGLSHLSGM 164
Query: 276 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 312
NL+ L L I D+GL +L + L+ L+L++T++
Sbjct: 165 KNLKRLTLSRTAITDKGLEHLQSITVLQDLQLNNTKI 201
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 72/131 (54%), Gaps = 1/131 (0%)
Query: 264 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 323
+T + L L L + L+L +GD+G+V++ L L+ L LS T++ +G LS L
Sbjct: 58 LTGKDLEPLGKLGTVHYLDLSDTSVGDDGMVHINKLEGLQVLVLSGTEITDAGFSQLSNL 117
Query: 324 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 383
++L + S + DG++ LA + L L++ Q+TD+GL+ L+ + L L L
Sbjct: 118 SDLNQLTASEL-MGDGTMAALASATKLNFLDMTGGQVTDSGLSHLSGMKNLKRLTLSRTA 176
Query: 384 ITDSGAAYLRS 394
ITD G +L+S
Sbjct: 177 ITDKGLEHLQS 187
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 66/134 (49%), Gaps = 6/134 (4%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
+DLS + V D G++H+ LQ L + +I+D G L LS+L L+ +
Sbjct: 75 LDLSDTSVGDDGMVHINKLEGLQVLVLS-GTEITDAGFSQLSNLSDLNQLTASE---LMG 130
Query: 122 QG-MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
G M A A L LD+ GL +L G+ L+ L + ITD ++ L +T
Sbjct: 131 DGTMAALASATKLNFLDMTGGQVTDSGLSHLSGMKNLKRLTLSRT-AITDKGLEHLQSIT 189
Query: 181 NLKSLQISCSKVTD 194
L+ LQ++ +K+TD
Sbjct: 190 VLQDLQLNNTKITD 203
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Query: 46 DKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGL 105
D M +AS + L +D++G VTDSGL HL NL+ L + I+D GLEHL+ +
Sbjct: 131 DGTMAALAS-ATKLNFLDMTGGQVTDSGLSHLSGMKNLKRLTLSRT-AITDKGLEHLQSI 188
Query: 106 SNLTSLSFRRNNAIT 120
+ L L N IT
Sbjct: 189 TVLQDLQL-NNTKIT 202
>gi|406833162|ref|ZP_11092756.1| hypothetical protein SpalD1_16026 [Schlesneria paludicola DSM
18645]
Length = 447
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 89/335 (26%), Positives = 149/335 (44%), Gaps = 31/335 (9%)
Query: 66 GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMK 125
GS++ L+ S+L+ L C ++D + L GL LTSL+ N+ I G++
Sbjct: 92 GSNLQSEDLVLFGKLSDLKKLQIFNCRTLNDEMVAQLSGLKGLTSLALT-NSVINDSGVE 150
Query: 126 AFA-GLINLVKLDLERCTRIHGGLVN-------------------------LKGLMKLES 159
L +LDL T + G+V L L +L S
Sbjct: 151 TIVKSFPELTELDLSSNTNMTNGVVKIISNLGKLQRLTLVQNQINDIGAQRLSKLQELRS 210
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
L+++ D ++ ++GL +L+S + + V DSG+ YL Q L L L+ +T
Sbjct: 211 LDLRGNMEAGDMTLEVVAGLPHLQSFKHRSTAVNDSGLEYLSQGQALESLLLQDFVITDQ 270
Query: 220 CLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 278
L+ L L L + RCQ DG +G +++ + D + L L
Sbjct: 271 SGPHLAKLSKLSQLEIFRCQGFGSDGVLALKGMGLIRLTLRDLPNVDDRAMEVFDDLPQL 330
Query: 279 ESLNLDS-CGIGDEGLVNLTGLCNLKCLEL-SDTQVGSSGLRHLSGLTNLESINLSFTGI 336
L L +GD GL +L GL +L+ L++ + Q+ + +S L NL+ +++ TG+
Sbjct: 331 RRLYLHELTSVGDAGLKHLAGLKSLELLDIWTVPQMTDETVDVISQLPNLKDLSIRVTGV 390
Query: 337 SDGSLRKLAGLSSLKSLNLDAR-QITDTGLAALTS 370
+D ++ KL + SL+SL IT GL L++
Sbjct: 391 TDSAIDKLLTMKSLQSLTFKENGSITAEGLKKLSA 425
Score = 67.8 bits (164), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 66/188 (35%), Positives = 89/188 (47%), Gaps = 8/188 (4%)
Query: 43 GVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
VND ++ + SQG +L S+ L +TD HL S L L+ C G+ L
Sbjct: 242 AVNDSGLEYL-SQGQALESLLLQDFVITDQSGPHLAKLSKLSQLEIFRCQGFGSDGVLAL 300
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLN 161
+G+ L L+ R + + M+ F L L +L L T + GL +L GL LE L+
Sbjct: 301 KGM-GLIRLTLRDLPNVDDRAMEVFDDLPQLRRLYLHELTSVGDAGLKHLAGLKSLELLD 359
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL---KGLQKLTLLNLEGCPVTA 218
I +TD + +S L NLK L I + VTDS I L K LQ LT E +TA
Sbjct: 360 IWTVPQMTDETVDVISQLPNLKDLSIRVTGVTDSAIDKLLTMKSLQSLTF--KENGSITA 417
Query: 219 ACLDSLSA 226
L LSA
Sbjct: 418 EGLKKLSA 425
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 85/305 (27%), Positives = 138/305 (45%), Gaps = 16/305 (5%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI--QISDGGLEH 101
+ND ++ I L +DLS + +G++ + SNL L + QI+D G +
Sbjct: 144 INDSGVETIVKSFPELTELDLSSNTNMTNGVVKI--ISNLGKLQRLTLVQNQINDIGAQR 201
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH-GGLVNLKGLMKLESL 160
L L L SL R N ++ AGL +L R T ++ GL L LESL
Sbjct: 202 LSKLQELRSLDLRGNMEAGDMTLEVVAGLPHLQSFK-HRSTAVNDSGLEYLSQGQALESL 260
Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK--GLQKLTLLNLEGCPVT 217
++ ITD L+ L+ L L+I C G+ LK GL +LTL +L
Sbjct: 261 LLQDF-VITDQSGPHLAKLSKLSQLEIFRCQGFGSDGVLALKGMGLIRLTLRDLPNVDDR 319
Query: 218 A-ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGL 275
A D L L L+ L + D G + + + SL++L++ ++TDE + + L
Sbjct: 320 AMEVFDDLPQLRRLYLHEL--TSVGDAGLKHLAGLKSLELLDIWTVPQMTDETVDVISQL 377
Query: 276 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT-QVGSSGLRHLSGLTNLESINLSFT 334
NL+ L++ G+ D + L + +L+ L + + + GL+ LS ++L +
Sbjct: 378 PNLKDLSIRVTGVTDSAIDKLLTMKSLQSLTFKENGSITAEGLKKLSA-RKWSKLDLGTS 436
Query: 335 GISDG 339
SDG
Sbjct: 437 NQSDG 441
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 91/206 (44%), Gaps = 28/206 (13%)
Query: 179 LTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
L++LK LQI +C + D +A L GL+ LT L L
Sbjct: 106 LSDLKKLQIFNCRTLNDEMVAQLSGLKGLT------------------------SLALTN 141
Query: 238 CQLSDDGCEKFSK-IGSLKVLNLGFN-EITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
++D G E K L L+L N +T+ + + L L+ L L I D G
Sbjct: 142 SVINDSGVETIVKSFPELTELDLSSNTNMTNGVVKIISNLGKLQRLTLVQNQINDIGAQR 201
Query: 296 LTGLCNLKCLELS-DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 354
L+ L L+ L+L + + G L ++GL +L+S T ++D L L+ +L+SL
Sbjct: 202 LSKLQELRSLDLRGNMEAGDMTLEVVAGLPHLQSFKHRSTAVNDSGLEYLSQGQALESLL 261
Query: 355 LDARQITDTGLAALTSLTGLTHLDLF 380
L ITD L L+ L+ L++F
Sbjct: 262 LQDFVITDQSGPHLAKLSKLSQLEIF 287
Score = 42.7 bits (99), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 62/118 (52%), Gaps = 3/118 (2%)
Query: 267 ECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL-SGLT 324
E LV L++L+ L + +C + DE + L+GL L L L+++ + SG+ +
Sbjct: 98 EDLVLFGKLSDLKKLQIFNCRTLNDEMVAQLSGLKGLTSLALTNSVINDSGVETIVKSFP 157
Query: 325 NLESINLSF-TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 381
L ++LS T +++G ++ ++ L L+ L L QI D G L+ L L LDL G
Sbjct: 158 ELTELDLSSNTNMTNGVVKIISNLGKLQRLTLVQNQINDIGAQRLSKLQELRSLDLRG 215
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 71/174 (40%), Gaps = 30/174 (17%)
Query: 248 FSKIGSLKVLNLGFN--EITDECLVHLKGLTNLESLNLDSCGIGDEGL------------ 293
F K+ LK L + FN + DE + L GL L SL L + I D G+
Sbjct: 103 FGKLSDLKKLQI-FNCRTLNDEMVAQLSGLKGLTSLALTNSVINDSGVETIVKSFPELTE 161
Query: 294 ------VNLTG--------LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT-GISD 338
N+T L L+ L L Q+ G + LS L L S++L D
Sbjct: 162 LDLSSNTNMTNGVVKIISNLGKLQRLTLVQNQINDIGAQRLSKLQELRSLDLRGNMEAGD 221
Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
+L +AGL L+S + + D+GL L+ L L L ITD +L
Sbjct: 222 MTLEVVAGLPHLQSFKHRSTAVNDSGLEYLSQGQALESLLLQDFVITDQSGPHL 275
>gi|300694035|ref|YP_003750008.1| type III effector protein [Ralstonia solanacearum PSI07]
gi|299076072|emb|CBJ35382.1| putative leucine-rich-repeat type III effector protein (GALA1-like)
[Ralstonia solanacearum PSI07]
Length = 590
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 75/231 (32%), Positives = 117/231 (50%), Gaps = 5/231 (2%)
Query: 168 ITDSDMKPLSGLTNLKSLQIS-C-SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
+TD D+K L +LK+L +S C +++T GIA+L L L LN+ + A L+
Sbjct: 132 VTDDDLKGLPA--SLKALDLSDCRAQITSEGIAHLSKL-PLVRLNVSHNRIDAEGARLLA 188
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
A+ +L L+++ + DG + + +L +LN+G N I D L T L SLN +
Sbjct: 189 AMPTLTELDISHNDIRADGAQALADSATLTLLNVGNNRIGDRGAQALAANTKLTSLNASA 248
Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 345
GIG G+ L L L+LS T + + L+ T L S+N+ + + D R LA
Sbjct: 249 NGIGSAGVQALAANATLAALDLSCTSIDEESAQALARNTTLTSLNVRLSRLGDAGARALA 308
Query: 346 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRSKF 396
++L SLN+ +I G AL + T LT LD+ G ++ GA L +
Sbjct: 309 ATTTLTSLNVSLNEIGPEGAKALANNTSLTSLDIGGNKVGVDGAQALATSM 359
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 98/337 (29%), Positives = 151/337 (44%), Gaps = 7/337 (2%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC-IQISDGGLEHLRGLSNLTSLSFRR 115
++L + LSG DVTD L L ++L++LD + C QI+ G+ HL L L L+
Sbjct: 121 AALEKLTLSG-DVTDDDLKGLP--ASLKALDLSDCRAQITSEGIAHLSKLP-LVRLNVSH 176
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
N I A+G + A + L +LD+ G L L LN+ N I D +
Sbjct: 177 NR-IDAEGARLLAAMPTLTELDISHNDIRADGAQALADSATLTLLNVG-NNRIGDRGAQA 234
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
L+ T L SL S + + +G+ L L L+L + +L+ +L LN+
Sbjct: 235 LAANTKLTSLNASANGIGSAGVQALAANATLAALDLSCTSIDEESAQALARNTTLTSLNV 294
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
+L D G + +L LN+ NEI E L T+L SL++ +G +G
Sbjct: 295 RLSRLGDAGARALAATTTLTSLNVSLNEIGPEGAKALANNTSLTSLDIGGNKVGVDGAQA 354
Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355
L L L + ++ +G + L+ T L S+++S G+ R +L SL +
Sbjct: 355 LATSMTLTSLVIHRNRIEVAGAQALANNTRLTSLDISDNGLGVWGARAFVDNETLTSLRI 414
Query: 356 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
I D G L T LT LD+ RI ++GA L
Sbjct: 415 ATNMIGDEGAKWLARNTTLTSLDIGENRIGETGAQAL 451
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 77/256 (30%), Positives = 123/256 (48%), Gaps = 11/256 (4%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L S+++S +++ G L + ++L SLD ++ G + L LTSL RN
Sbjct: 311 TTLTSLNVSLNEIGPEGAKALANNTSLTSLDIGGN-KVGVDGAQALATSMTLTSLVIHRN 369
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLM---KLESLNIKWCNCITDSD 172
I G +A A L LD+ +G G+ + + L SL I N I D
Sbjct: 370 R-IEVAGAQALANNTRLTSLDISD----NGLGVWGARAFVDNETLTSLRIA-TNMIGDEG 423
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
K L+ T L SL I +++ ++G L G KLT LN+ G + + L+ +L
Sbjct: 424 AKWLARNTTLTSLDIGENRIGETGAQALAGNTKLTSLNISGNAIGMMGVLRLARNTTLAA 483
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
LN++R Q+ G + ++ +L+ L + +NEI +E L G L SL++ C IGDEG
Sbjct: 484 LNVSRNQIGVAGAQDLARNTTLRSLVVNYNEIGNEGARALAGNKTLASLSVVDCRIGDEG 543
Query: 293 LVNLTGLCNLKCLELS 308
L L L++S
Sbjct: 544 AHALAANTTLALLDVS 559
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 95/339 (28%), Positives = 155/339 (45%), Gaps = 11/339 (3%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
+L +D+S +D+ G L D + L L+ +I D G + L + LTSL+ N
Sbjct: 192 TLTELDISHNDIRADGAQALADSATLTLLNVGNN-RIGDRGAQALAANTKLTSLNASAN- 249
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
I + G++A A L LDL CT I L L SLN++ + D+ + L
Sbjct: 250 GIGSAGVQALAANATLAALDLS-CTSIDEESAQALARNTTLTSLNVRLSR-LGDAGARAL 307
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ T L SL +S +++ G L LT L++ G V +L+ +L L ++
Sbjct: 308 AATTTLTSLNVSLNEIGPEGAKALANNTSLTSLDIGGNKVGVDGAQALATSMTLTSLVIH 367
Query: 237 RCQLSDDGCEKFS---KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
R ++ G + + ++ SL + + G V + LT SL + + IGDEG
Sbjct: 368 RNRIEVAGAQALANNTRLTSLDISDNGLGVWGARAFVDNETLT---SLRIATNMIGDEGA 424
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
L L L++ + ++G +G + L+G T L S+N+S I + +LA ++L +L
Sbjct: 425 KWLARNTTLTSLDIGENRIGETGAQALAGNTKLTSLNISGNAIGMMGVLRLARNTTLAAL 484
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
N+ QI G L T L L + I + GA L
Sbjct: 485 NVSRNQIGVAGAQDLARNTTLRSLVVNYNEIGNEGARAL 523
>gi|350417674|ref|XP_003491538.1| PREDICTED: F-box/LRR-repeat protein 14-like [Bombus impatiens]
Length = 485
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 101/321 (31%), Positives = 170/321 (52%), Gaps = 44/321 (13%)
Query: 57 SSLLSVDLSG-SDVTDSGLIHL--KDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLS 112
+L +++LSG ++TD GLI+ ++ + L L+ + C Q+SD L + + L NL L
Sbjct: 181 PNLEALNLSGCYNITDVGLINAFCQEYATLIELNLSLCKQVSDISLGRIVQYLKNLEHLE 240
Query: 113 FRRNNAITAQGMKAFA-GLINLVKLDLERCTRIHG-GLVNLKGL--------MKLESLNI 162
IT G+ A L L +LDL C ++ G+ +L G+ + LE L++
Sbjct: 241 LGGCCNITNGGLLCIAWNLKKLKRLDLRSCWQVSDLGIAHLAGVNRESAGGNLALEHLSL 300
Query: 163 KWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 220
+ C ++D ++ +S GLT LKS+ +S C +TDSG+ +L + L LNL C
Sbjct: 301 QDCQRLSDEALRHVSIGLTTLKSINLSFCVCITDSGLKHLAKMSSLRELNLRSC------ 354
Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHL-KGLTNL 278
D++S +G + L++ G S+I SL V F ++I D+ LVH+ +GL NL
Sbjct: 355 -DNISDIGMAY--------LAEGG----SRISSLDV---SFCDKIGDQALVHISQGLFNL 398
Query: 279 ESLNLDSCGIGDEGLVNLTG-LCNLKCLELSD-TQVGSSGLRHLS-GLTNLESINL-SFT 334
+ L+L +C I DEG+ + L +L+ L + +++ GL ++ + +L+ I+L T
Sbjct: 399 KLLSLSACQISDEGICKIAKTLHDLETLNIGQCSRLTDKGLYTIAESMKHLKCIDLYGCT 458
Query: 335 GISDGSLRKLAGLSSLKSLNL 355
IS L ++ L L +LNL
Sbjct: 459 RISTNGLERIMKLPQLSTLNL 479
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 71/247 (28%), Positives = 120/247 (48%), Gaps = 39/247 (15%)
Query: 28 FRDC-ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSD---VTDSGLIHLK-DCSN 82
R C + DL + GVN + S G +L LS D ++D L H+ +
Sbjct: 267 LRSCWQVSDLGIAHLAGVNRE------SAGGNLALEHLSLQDCQRLSDEALRHVSIGLTT 320
Query: 83 LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT 142
L+S++ +FC+ I+D GL+HL +S+L L+ R + I+ GM A
Sbjct: 321 LKSINLSFCVCITDSGLKHLAKMSSLRELNLRSCDNISDIGMAYLA-------------- 366
Query: 143 RIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKSLQISCSKVTDSGIAYL- 200
+G ++ SL++ +C+ I D + +S GL NLK L +S +++D GI +
Sbjct: 367 ---------EGGSRISSLDVSFCDKIGDQALVHISQGLFNLKLLSLSACQISDEGICKIA 417
Query: 201 KGLQKLTLLNLEGCP-VTAACLDSLS-ALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVL 257
K L L LN+ C +T L +++ ++ L ++L C ++S +G E+ K+ L L
Sbjct: 418 KTLHDLETLNIGQCSRLTDKGLYTIAESMKHLKCIDLYGCTRISTNGLERIMKLPQLSTL 477
Query: 258 NLGFNEI 264
NLG +
Sbjct: 478 NLGLWHV 484
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 70/210 (33%), Positives = 103/210 (49%), Gaps = 38/210 (18%)
Query: 200 LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 259
LKG+ L LNL GC N+ L + C++++ +L LNL
Sbjct: 177 LKGVPNLEALNLSGC------------------YNITDVGLINAFCQEYA---TLIELNL 215
Query: 260 GF-NEITDECLVHL-KGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLEL-SDTQVGS 314
+++D L + + L NLE L L C I + GL+ + L LK L+L S QV
Sbjct: 216 SLCKQVSDISLGRIVQYLKNLEHLELGGCCNITNGGLLCIAWNLKKLKRLDLRSCWQVSD 275
Query: 315 SGLRHLSGLT------NLESINLSFTG---ISDGSLRKLA-GLSSLKSLNLD-ARQITDT 363
G+ HL+G+ NL +LS +SD +LR ++ GL++LKS+NL ITD+
Sbjct: 276 LGIAHLAGVNRESAGGNLALEHLSLQDCQRLSDEALRHVSIGLTTLKSINLSFCVCITDS 335
Query: 364 GLAALTSLTGLTHLDLFGA-RITDSGAAYL 392
GL L ++ L L+L I+D G AYL
Sbjct: 336 GLKHLAKMSSLRELNLRSCDNISDIGMAYL 365
>gi|299065269|emb|CBJ36437.1| leucine-rich-repeat type III effector protein (GALA8) [Ralstonia
solanacearum CMR15]
Length = 524
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 108/364 (29%), Positives = 166/364 (45%), Gaps = 28/364 (7%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
+L S+DL G+ +TD G L L +L+ + I G + L LT+L+ R N
Sbjct: 158 TLTSLDLRGNKITDLGAQALATSRTLTTLNLDTNT-IGAKGAQALAASRTLTTLNLR-GN 215
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
I G +A A L L E C G+ L L +LN+ N I D+ + L+
Sbjct: 216 KIEDAGAQALAASTTLTSLSAEGCRIGLAGVQALAASRSLTTLNLAGNN-IDDAGAQALA 274
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
L +L +S +K+ D+G L + L L ++ C + AA +L+ SL LN++
Sbjct: 275 ASRTLTTLDLSANKIGDAGALALAASRTLASLEVDHCEIGAAGAQALATSDSLAALNISH 334
Query: 238 CQLSDDG------CEKFSKIG------------------SLKVLNLGFNEITDECLVHLK 273
+ D G C + I SL L+L N+I D+ L
Sbjct: 335 NPVGDAGAQALAICRTLTSIKAKDCQIGAAGAQALAASDSLTSLDLDANQIGDDGAQALA 394
Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333
L SLN+ IGD G+ L L+ L++SD ++G + ++ L+ L S+N+S
Sbjct: 395 TSNTLTSLNVRYNTIGDLGVQALAANRLLESLDVSDNKIGITSVQALAENCTLTSLNVSG 454
Query: 334 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA-AYL 392
I D + LA SL SLN+ +I D G AL + LT LD+ RI ++GA A +
Sbjct: 455 NNIGDAGAQLLAANRSLTSLNVCWSRIGDAGALALAANRSLTSLDVSVNRIGEAGARALV 514
Query: 393 RSKF 396
++F
Sbjct: 515 ANRF 518
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 94/316 (29%), Positives = 138/316 (43%), Gaps = 5/316 (1%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR----RNNAITAQGMKAFAGLINLVKL 136
++++ +D + C S + GL L L ++ +T+ G +A A L L
Sbjct: 103 ASVRHIDLSGCNATSSTSATSVAGLKYLAKLPITSLVIQDAGMTSVGARALAASDTLTSL 162
Query: 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG 196
DL G L L +LN+ N I + L+ L +L + +K+ D+G
Sbjct: 163 DLRGNKITDLGAQALATSRTLTTLNLD-TNTIGAKGAQALAASRTLTTLNLRGNKIEDAG 221
Query: 197 IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 256
L LT L+ EGC + A + +L+A SL LNL + D G + + +L
Sbjct: 222 AQALAASTTLTSLSAEGCRIGLAGVQALAASRSLTTLNLAGNNIDDAGAQALAASRTLTT 281
Query: 257 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 316
L+L N+I D + L L SL +D C IG G L +L L +S VG +G
Sbjct: 282 LDLSANKIGDAGALALAASRTLASLEVDHCEIGAAGAQALATSDSLAALNISHNPVGDAG 341
Query: 317 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 376
+ L+ L SI I + LA SL SL+LDA QI D G AL + LT
Sbjct: 342 AQALAICRTLTSIKAKDCQIGAAGAQALAASDSLTSLDLDANQIGDDGAQALATSNTLTS 401
Query: 377 LDLFGARITDSGAAYL 392
L++ I D G L
Sbjct: 402 LNVRYNTIGDLGVQAL 417
>gi|255525367|ref|ZP_05392306.1| putative cell wall binding repeat 2-containing protein [Clostridium
carboxidivorans P7]
gi|296187977|ref|ZP_06856369.1| leucine Rich repeat protein [Clostridium carboxidivorans P7]
gi|255510938|gb|EET87239.1| putative cell wall binding repeat 2-containing protein [Clostridium
carboxidivorans P7]
gi|296047103|gb|EFG86545.1| leucine Rich repeat protein [Clostridium carboxidivorans P7]
Length = 660
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 100/319 (31%), Positives = 162/319 (50%), Gaps = 45/319 (14%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
+KD S L++L + ++D + L L NLT NL KL
Sbjct: 373 IKDISGLENLTNLQILALTDTEVSDLSPLKNLT----------------------NLQKL 410
Query: 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG 196
+L RC ++ + LK L L++LN+ WC + SD+ PL LTNL+ L + +++D+
Sbjct: 411 NL-RCAQV-SDISPLKYLTNLQNLNL-WCAQV--SDISPLKDLTNLQKLDLHIPQISDT- 464
Query: 197 IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD-DGCEKFSKIGSLK 255
+ LK L L L+L+ V + ++ L L +L LNL+R Q+SD G + + + L
Sbjct: 465 -SALKNLTNLQQLSLQYTQV--SHINGLENLTNLQQLNLDRTQVSDISGLKDLTNLQKLN 521
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 315
+ N + I+ LK LTNL+ L+L S + D + L L NL+ L+L++ QV S
Sbjct: 522 LNNNQVSNIS-----PLKYLTNLQELDLSSNQVSD--ISPLKYLTNLQKLDLNNNQV--S 572
Query: 316 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 375
+ L LTNL+ + L+ ISD + L L +L+ L L QI+D ++ L L L
Sbjct: 573 DVSPLKYLTNLQDLLLNVNQISD--ISPLKDLINLQGLYLGINQISD--ISPLKYLINLR 628
Query: 376 HLDLFGARITDSGAAYLRS 394
L+L +++D+ L++
Sbjct: 629 ELNLKHTQVSDADKQSLKN 647
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 92/299 (30%), Positives = 142/299 (47%), Gaps = 56/299 (18%)
Query: 116 NNAITAQGM---KAFAGLIN-----LVKLDLERCTRI-------HGGLVNLKGLMKLESL 160
NN +T + KA IN L+K D+ + T + H + ++ GL L +L
Sbjct: 326 NNIVTFKDKNLEKAIRATINKPTGELLKSDVNQITELDVSIINEHTDIKDISGLENLTNL 385
Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAA 219
I SD+ PL LTNL+ L + C++V+D S + YL LQ L L C +
Sbjct: 386 QILALTDTEVSDLSPLKNLTNLQKLNLRCAQVSDISPLKYLTNLQNLNLW----C-AQVS 440
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG---LT 276
+ L L +L L+L+ Q+SD K + +L+ L+L + +++ H+ G LT
Sbjct: 441 DISPLKDLTNLQKLDLHIPQISDTSALK--NLTNLQQLSLQYTQVS-----HINGLENLT 493
Query: 277 NLESLNLDSCGIGD--------------------EGLVNLTGLCNLKCLELSDTQVGSSG 316
NL+ LNLD + D + L L NL+ L+LS QV S
Sbjct: 494 NLQQLNLDRTQVSDISGLKDLTNLQKLNLNNNQVSNISPLKYLTNLQELDLSSNQV--SD 551
Query: 317 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD-TGLAALTSLTGL 374
+ L LTNL+ ++L+ +SD S L L++L+ L L+ QI+D + L L +L GL
Sbjct: 552 ISPLKYLTNLQKLDLNNNQVSDVS--PLKYLTNLQDLLLNVNQISDISPLKDLINLQGL 608
Score = 38.9 bits (89), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 64/133 (48%), Gaps = 15/133 (11%)
Query: 72 SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLI 131
S + LK +NLQ LD + Q+SD + L+ L+NL L N +K L
Sbjct: 528 SNISPLKYLTNLQELDLS-SNQVSD--ISPLKYLTNLQKLDLNNNQVSDVSPLKYLTNLQ 584
Query: 132 NLVKLDLERCTRIHG--GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISC 189
+L+ L++ + + I L+NL+GL L I SD+ PL L NL+ L +
Sbjct: 585 DLL-LNVNQISDISPLKDLINLQGLY----LGINQI-----SDISPLKYLINLRELNLKH 634
Query: 190 SKVTDSGIAYLKG 202
++V+D+ LK
Sbjct: 635 TQVSDADKQSLKN 647
>gi|157865941|ref|XP_001681677.1| putative surface antigen protein [Leishmania major strain Friedlin]
gi|68124975|emb|CAJ02737.1| putative surface antigen protein [Leishmania major strain Friedlin]
Length = 776
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 78/333 (23%), Positives = 157/333 (47%), Gaps = 5/333 (1%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ SL +++L G+ V+ + +L++L+ Q+S +++L +L+
Sbjct: 251 SEMKSLTNLELEGTQVSGTLPPGWSSIKSLRTLNLE-GTQVSGSLPPEWVSMASLRTLNL 309
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMK-LESLNIKWCNCITDSD 172
++ ++ + +L L+LE T++ G L MK L +LN++ ++ S
Sbjct: 310 E-GTQVSGTLPPGWSEMKSLTSLELE-GTQVSGTLPPRWSEMKSLRTLNLE-GTQVSGSL 366
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
+ +L++L + ++V+ S + L LNLEG V+ S + SL
Sbjct: 367 PPQWVSMASLRTLNLEGTQVSGSLPPEWVSMASLRTLNLEGTQVSGTLPPGWSEMKSLTS 426
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
L L Q+S ++S++ SL+ LNL +++ + +L +LNL+ +
Sbjct: 427 LELEGTQVSGTLPPRWSEMKSLRTLNLEGTQVSGSLPPEWVSMASLRTLNLEGTQVSGTL 486
Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
+ + +L LEL TQV + S + +L ++NL T +S + ++SL++
Sbjct: 487 PPGWSEMKSLTSLELEGTQVSGTLPPRWSEMKSLRTLNLEGTQVSGSLPPEWVSMASLRT 546
Query: 353 LNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
LNL+ Q++ T + + LT L+L G +++
Sbjct: 547 LNLEGTQVSGTLPPGWSEMKSLTSLELEGTQVS 579
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 97/389 (24%), Positives = 165/389 (42%), Gaps = 40/389 (10%)
Query: 6 ISQQIF---NELVYSRCLTEVSLEA-FRDCALQDLCLGQYP----GVNDKWMDVIASQGS 57
+S +F N Y+ L E+ + +R ++DL P + D W SQ
Sbjct: 78 VSVNVFVGLNVSTYAGTLPEIPVNVDYRHVMIRDLGFWNMPLLSGTLPDSW-----SQLG 132
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
LLSV LSG V+ + L+ L C HL G +L SL
Sbjct: 133 GLLSVTLSGCGVSGTLPASWGLMVRLRELTVRDC--------RHLTG--SLPSL------ 176
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGL-VNLKGLMKLESLNIKWCNCITDSDMKPL 176
++ L NL KL L R ++ G L + L L I IT +
Sbjct: 177 ---------WSWLPNLQKLVL-RQLQLSGTLPAEWSRVTSLLELEIVAAGDITGTLPPEW 226
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
S + +L++L + ++V+ + ++ LT L LEG V+ S++ SL LNL
Sbjct: 227 SSIKSLRTLNLEGTQVSGTLPPGWSEMKSLTNLELEGTQVSGTLPPGWSSIKSLRTLNLE 286
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q+S ++ + SL+ LNL +++ + +L SL L+ +
Sbjct: 287 GTQVSGSLPPEWVSMASLRTLNLEGTQVSGTLPPGWSEMKSLTSLELEGTQVSGTLPPRW 346
Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
+ + +L+ L L TQV S + +L ++NL T +S + ++SL++LNL+
Sbjct: 347 SEMKSLRTLNLEGTQVSGSLPPQWVSMASLRTLNLEGTQVSGSLPPEWVSMASLRTLNLE 406
Query: 357 ARQITDTGLAALTSLTGLTHLDLFGARIT 385
Q++ T + + LT L+L G +++
Sbjct: 407 GTQVSGTLPPGWSEMKSLTSLELEGTQVS 435
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 81/346 (23%), Positives = 154/346 (44%), Gaps = 27/346 (7%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ SL S++L G+ V+ + + +L++L+ Q+S +++L +L+
Sbjct: 323 SEMKSLTSLELEGTQVSGTLPPRWSEMKSLRTLNLE-GTQVSGSLPPQWVSMASLRTLNL 381
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHG----GLVNLKGLMKLE--------SLN 161
++ + + +L L+LE T++ G G +K L LE +L
Sbjct: 382 E-GTQVSGSLPPEWVSMASLRTLNLE-GTQVSGTLPPGWSEMKSLTSLELEGTQVSGTLP 439
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 221
+W S+MK +L++L + ++V+ S + L LNLEG V+
Sbjct: 440 PRW------SEMK------SLRTLNLEGTQVSGSLPPEWVSMASLRTLNLEGTQVSGTLP 487
Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 281
S + SL L L Q+S ++S++ SL+ LNL +++ + +L +L
Sbjct: 488 PGWSEMKSLTSLELEGTQVSGTLPPRWSEMKSLRTLNLEGTQVSGSLPPEWVSMASLRTL 547
Query: 282 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 341
NL+ + + + +L LEL TQV + S + +L ++NL T +S
Sbjct: 548 NLEGTQVSGTLPPGWSEMKSLTSLELEGTQVSGTLPPRWSEMKSLRTLNLEGTQVSGALP 607
Query: 342 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 387
+ SL +L L+ Q++ + + LT+L L G +++ S
Sbjct: 608 PGWGEMKSLTNLYLEGTQLSGSLPTEWRGMKSLTNLYLEGTQVSGS 653
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 81/336 (24%), Positives = 154/336 (45%), Gaps = 11/336 (3%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ SL +++L G+ V+ S ++L++L+ Q+S +++L +L+
Sbjct: 347 SEMKSLRTLNLEGTQVSGSLPPQWVSMASLRTLNLE-GTQVSGSLPPEWVSMASLRTLNL 405
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMK-LESLNIKWCNCITDSD 172
++ ++ + +L L+LE T++ G L MK L +LN++ ++ S
Sbjct: 406 E-GTQVSGTLPPGWSEMKSLTSLELE-GTQVSGTLPPRWSEMKSLRTLNLE-GTQVSGSL 462
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
+ +L++L + ++V+ + ++ LT L LEG V+ S + SL
Sbjct: 463 PPEWVSMASLRTLNLEGTQVSGTLPPGWSEMKSLTSLELEGTQVSGTLPPRWSEMKSLRT 522
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
LNL Q+S ++ + SL+ LNL +++ + +L SL L+ +
Sbjct: 523 LNLEGTQVSGSLPPEWVSMASLRTLNLEGTQVSGTLPPGWSEMKSLTSLELEGTQVSGTL 582
Query: 293 LVNLTGLCNLKCLELSDTQVG---SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 349
+ + +L+ L L TQV G + LTNL L T +S + G+ S
Sbjct: 583 PPRWSEMKSLRTLNLEGTQVSGALPPGWGEMKSLTNL---YLEGTQLSGSLPTEWRGMKS 639
Query: 350 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
L +L L+ Q++ + +SLT L LDL G +++
Sbjct: 640 LTNLYLEGTQVSGSLPPQWSSLTSLRTLDLEGTQVS 675
>gi|340728038|ref|XP_003402339.1| PREDICTED: f-box/LRR-repeat protein 14-like [Bombus terrestris]
Length = 485
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 101/321 (31%), Positives = 170/321 (52%), Gaps = 44/321 (13%)
Query: 57 SSLLSVDLSG-SDVTDSGLIHL--KDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLS 112
+L +++LSG ++TD GLI+ ++ + L L+ + C Q+SD L + + L NL L
Sbjct: 181 PNLEALNLSGCYNITDVGLINAFCQEYATLIELNLSLCKQVSDISLGRIVQYLKNLEHLE 240
Query: 113 FRRNNAITAQGMKAFA-GLINLVKLDLERCTRIHG-GLVNLKGL--------MKLESLNI 162
IT G+ A L L +LDL C ++ G+ +L G+ + LE L++
Sbjct: 241 LGGCCNITNGGLLCIAWNLKKLKRLDLRSCWQVSDLGIAHLAGVNRESAGGNLALEHLSL 300
Query: 163 KWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 220
+ C ++D ++ +S GLT LKS+ +S C +TDSG+ +L + L LNL C
Sbjct: 301 QDCQRLSDEALRHVSIGLTTLKSINLSFCVCITDSGLKHLAKMSSLRELNLRSC------ 354
Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHL-KGLTNL 278
D++S +G + L++ G S+I SL V F ++I D+ LVH+ +GL NL
Sbjct: 355 -DNISDIGMAY--------LAEGG----SRISSLDV---SFCDKIGDQALVHISQGLFNL 398
Query: 279 ESLNLDSCGIGDEGLVNLTG-LCNLKCLELSD-TQVGSSGLRHLS-GLTNLESINL-SFT 334
+ L+L +C I DEG+ + L +L+ L + +++ GL ++ + +L+ I+L T
Sbjct: 399 KLLSLSACQISDEGICKIAKTLHDLETLNIGQCSRLTDKGLYTIAESMKHLKCIDLYGCT 458
Query: 335 GISDGSLRKLAGLSSLKSLNL 355
IS L ++ L L +LNL
Sbjct: 459 RISTNGLERIMKLPQLSTLNL 479
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 71/247 (28%), Positives = 120/247 (48%), Gaps = 39/247 (15%)
Query: 28 FRDC-ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSD---VTDSGLIHLK-DCSN 82
R C + DL + GVN + S G +L LS D ++D L H+ +
Sbjct: 267 LRSCWQVSDLGIAHLAGVNRE------SAGGNLALEHLSLQDCQRLSDEALRHVSIGLTT 320
Query: 83 LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT 142
L+S++ +FC+ I+D GL+HL +S+L L+ R + I+ GM A
Sbjct: 321 LKSINLSFCVCITDSGLKHLAKMSSLRELNLRSCDNISDIGMAYLA-------------- 366
Query: 143 RIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKSLQISCSKVTDSGIAYL- 200
+G ++ SL++ +C+ I D + +S GL NLK L +S +++D GI +
Sbjct: 367 ---------EGGSRISSLDVSFCDKIGDQALVHISQGLFNLKLLSLSACQISDEGICKIA 417
Query: 201 KGLQKLTLLNLEGCP-VTAACLDSLS-ALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVL 257
K L L LN+ C +T L +++ ++ L ++L C ++S +G E+ K+ L L
Sbjct: 418 KTLHDLETLNIGQCSRLTDKGLYTIAESMKHLKCIDLYGCTRISTNGLERIMKLPQLSTL 477
Query: 258 NLGFNEI 264
NLG +
Sbjct: 478 NLGLWHV 484
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 70/210 (33%), Positives = 103/210 (49%), Gaps = 38/210 (18%)
Query: 200 LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 259
LKG+ L LNL GC N+ L + C++++ +L LNL
Sbjct: 177 LKGVPNLEALNLSGC------------------YNITDVGLINAFCQEYA---TLIELNL 215
Query: 260 GF-NEITDECLVHL-KGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLEL-SDTQVGS 314
+++D L + + L NLE L L C I + GL+ + L LK L+L S QV
Sbjct: 216 SLCKQVSDISLGRIVQYLKNLEHLELGGCCNITNGGLLCIAWNLKKLKRLDLRSCWQVSD 275
Query: 315 SGLRHLSGLT------NLESINLSFTG---ISDGSLRKLA-GLSSLKSLNLD-ARQITDT 363
G+ HL+G+ NL +LS +SD +LR ++ GL++LKS+NL ITD+
Sbjct: 276 LGIAHLAGVNRESAGGNLALEHLSLQDCQRLSDEALRHVSIGLTTLKSINLSFCVCITDS 335
Query: 364 GLAALTSLTGLTHLDLFGA-RITDSGAAYL 392
GL L ++ L L+L I+D G AYL
Sbjct: 336 GLKHLAKMSSLRELNLRSCDNISDIGMAYL 365
>gi|224124658|ref|XP_002330078.1| predicted protein [Populus trichocarpa]
gi|222871503|gb|EEF08634.1| predicted protein [Populus trichocarpa]
Length = 1228
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 105/320 (32%), Positives = 149/320 (46%), Gaps = 25/320 (7%)
Query: 83 LQSLD--FNFCIQISDG-GLEHLRG-LSNLTSLSFRRNNAITAQG-MKAFAGLINLVKLD 137
LQSLD +N + S+ G E L L L L RN +G + F GL L LD
Sbjct: 97 LQSLDLSYNGLVGCSENEGFEVLSSKLRKLEVLDLTRNRFNNDKGILSCFNGLSALKSLD 156
Query: 138 LERCTRIHGGLVNLKG-LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG 196
L GL L L KLE+L++ C DS ++G ++LKSL +S ++VT SG
Sbjct: 157 LSDNQLTGSGLKVLSSRLKKLENLHLSANQC-NDSIFSSITGFSSLKSLDLSYNEVTGSG 215
Query: 197 IAYLKG-LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
+ L L++L L+L + SL+ SL LNL+ QL+ K G
Sbjct: 216 LKVLSSRLKRLENLDLSDNQCNDSIFSSLTGFSSLKSLNLSYNQLTGSSMVSIEKNGYYS 275
Query: 256 VLNL--------GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 307
L + V + GL NLE L+L S + + L +L+G LK L+L
Sbjct: 276 FLQYTKWILPLYPSDNFLSGFQVLVSGLRNLEELHLYSNKLNNNILSSLSGFSTLKSLDL 335
Query: 308 SDTQV-GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 366
S + GS+GL+ GL NLE + L F ++ L L+G S+LKSL+L + T +
Sbjct: 336 SYNKFTGSTGLK---GLRNLEELYLGFNKFNNSILSSLSGFSTLKSLDLSNNKFTGS--- 389
Query: 367 ALTSLTGLTHLDLFGARITD 386
L GL +L+ TD
Sbjct: 390 --IGLKGLRNLETLNLEYTD 407
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 101/352 (28%), Positives = 161/352 (45%), Gaps = 52/352 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLI----HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS 112
S+L S+DLS + +T SGL LK NL L N C +D + G S+L SL
Sbjct: 150 SALKSLDLSDNQLTGSGLKVLSSRLKKLENLH-LSANQC---NDSIFSSITGFSSLKSLD 205
Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 172
N +T G+K + L +LE+L++ C DS
Sbjct: 206 LSYN-EVTGSGLKVLS-----------------------SRLKRLENLDLSDNQC-NDSI 240
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL-------- 224
L+G ++LKSL +S +++T S + ++ + L + D+
Sbjct: 241 FSSLTGFSSLKSLNLSYNQLTGSSMVSIEKNGYYSFLQYTKWILPLYPSDNFLSGFQVLV 300
Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284
S L +L L+L +L+++ S +LK L+L +N+ T LKGL NLE L L
Sbjct: 301 SGLRNLEELHLYSNKLNNNILSSLSGFSTLKSLDLSYNKFTGS--TGLKGLRNLEELYLG 358
Query: 285 SCGIGDEGLVNLTGLCNLKCLELSDTQV-GSSGLRHLSGLTNLESINLSFTGISDGSL-R 342
+ L +L+G LK L+LS+ + GS GL+ GL NLE++NL +T + L
Sbjct: 359 FNKFNNSILSSLSGFSTLKSLDLSNNKFTGSIGLK---GLRNLETLNLEYTDFKESILIE 415
Query: 343 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRS 394
L L SLK+L + G L++ + L + L+ + + A++LR+
Sbjct: 416 SLGALPSLKTLYASYSKFKHFG-KGLSNSSSLEEVFLYYSYLP---ASFLRN 463
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 102/333 (30%), Positives = 151/333 (45%), Gaps = 41/333 (12%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKD-CSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
SSL S+DLS ++VT SGL L L++LD + Q +D L G S+L SL+
Sbjct: 199 SSLKSLDLSYNEVTGSGLKVLSSRLKRLENLDLS-DNQCNDSIFSSLTGFSSLKSLNLSY 257
Query: 116 NN-------AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCI 168
N +I G +F + + G V + GL LE L++ + N +
Sbjct: 258 NQLTGSSMVSIEKNGYYSFLQYTKWILPLYPSDNFLSGFQVLVSGLRNLEELHL-YSNKL 316
Query: 169 TDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG 228
++ + LSG + LKSL +S +K T G LKGL+ L L L + L SLS
Sbjct: 317 NNNILSSLSGFSTLKSLDLSYNKFT--GSTGLKGLRNLEELYLGFNKFNNSILSSLSGF- 373
Query: 229 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 288
+LK L+L N+ T + LKGL NLE+LNL+
Sbjct: 374 -----------------------STLKSLDLSNNKFTGS--IGLKGLRNLETLNLEYTDF 408
Query: 289 GDEGLV-NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 347
+ L+ +L L +LK L S ++ G + LS ++LE + L ++ + LR + L
Sbjct: 409 KESILIESLGALPSLKTLYASYSKFKHFG-KGLSNSSSLEEVFLYYSYLPASFLRNIGHL 467
Query: 348 SSLKSLNLDARQITDTGLA-ALTSLTGLTHLDL 379
S+LK L+L + T A L L HL L
Sbjct: 468 STLKVLSLAGVDFSSTLPAEGWCELKNLEHLFL 500
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/101 (41%), Positives = 61/101 (60%), Gaps = 3/101 (2%)
Query: 290 DEGLVN-LTGLCNLKCLELSDTQVGSSGLRHLSG-LTNLESINLSFTGISDGSLRKLAGL 347
D+G+++ GL LK L+LSD Q+ SGL+ LS L LE+++LS +D + G
Sbjct: 139 DKGILSCFNGLSALKSLDLSDNQLTGSGLKVLSSRLKKLENLHLSANQCNDSIFSSITGF 198
Query: 348 SSLKSLNLDARQITDTGLAALTS-LTGLTHLDLFGARITDS 387
SSLKSL+L ++T +GL L+S L L +LDL + DS
Sbjct: 199 SSLKSLDLSYNEVTGSGLKVLSSRLKRLENLDLSDNQCNDS 239
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 99/203 (48%), Gaps = 37/203 (18%)
Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFS-KIGSLKVLNLGFNEITDECLVHLKGLTN 277
+C + LSAL SL +L+ QL+ G + S ++ L+ L+L N+ D + G ++
Sbjct: 144 SCFNGLSALKSL---DLSDNQLTGSGLKVLSSRLKKLENLHLSANQCNDSIFSSITGFSS 200
Query: 278 LESLNLDSCGIGDEGLVNLTG-LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF--- 333
L+SL+L + GL L+ L L+ L+LSD Q S L+G ++L+S+NLS+
Sbjct: 201 LKSLDLSYNEVTGSGLKVLSSRLKRLENLDLSDNQCNDSIFSSLTGFSSLKSLNLSYNQL 260
Query: 334 TGISDGSLRK-----------------------------LAGLSSLKSLNLDARQITDTG 364
TG S S+ K ++GL +L+ L+L + ++ +
Sbjct: 261 TGSSMVSIEKNGYYSFLQYTKWILPLYPSDNFLSGFQVLVSGLRNLEELHLYSNKLNNNI 320
Query: 365 LAALTSLTGLTHLDLFGARITDS 387
L++L+ + L LDL + T S
Sbjct: 321 LSSLSGFSTLKSLDLSYNKFTGS 343
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 71/149 (47%), Gaps = 8/149 (5%)
Query: 49 MDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNL 108
V+ S +L + L + + ++ L L S L+SLD ++ GL+ LR L L
Sbjct: 296 FQVLVSGLRNLEELHLYSNKLNNNILSSLSGFSTLKSLDLSYNKFTGSTGLKGLRNLEEL 355
Query: 109 TSLSFRR-NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNC 167
L F + NN+I + + +G L LDL G + LKGL LE+LN+++ +
Sbjct: 356 Y-LGFNKFNNSI----LSSLSGFSTLKSLDLS--NNKFTGSIGLKGLRNLETLNLEYTDF 408
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSG 196
++ L L +LK+L S SK G
Sbjct: 409 KESILIESLGALPSLKTLYASYSKFKHFG 437
>gi|194755888|ref|XP_001960211.1| GF13252 [Drosophila ananassae]
gi|190621509|gb|EDV37033.1| GF13252 [Drosophila ananassae]
Length = 492
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 105/331 (31%), Positives = 162/331 (48%), Gaps = 68/331 (20%)
Query: 7 SQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG 66
S +FN LV R + +V + + R +L+DL LG +L S++LSG
Sbjct: 208 SPSLFNCLV-KRGIKKVQILSLRR-SLKDLVLGV----------------PALTSLNLSG 249
Query: 67 S-DVTDSGLIHL--KDCSNLQSLDFNFCIQISDGGL----EHLRGLSNLTSLSFRRNNAI 119
+V D L H D NL++LD + C QI+D L +HLR NL +L I
Sbjct: 250 CFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLR---NLETLELGGCCNI 306
Query: 120 TAQGMKAFA-GLINLVKLDLERCTRIH-GGLVNLKGL--------MKLESLNIKWCNCIT 169
T G+ A GL L L+L C I G+ +L G ++LE L ++ C ++
Sbjct: 307 TNTGLLLIAWGLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEYLGLQDCQRLS 366
Query: 170 DSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
D + ++ GLT+LKS+ +S C VTDSG+ +L + KL LNL C D++S +
Sbjct: 367 DEALGHIAQGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSC-------DNISDI 419
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHL-KGLTNLESLNLDS 285
G + L++ G S I SL V F ++I+D+ L H+ +GL L SL+L+
Sbjct: 420 GMAY--------LTEGG----SGINSLDV---SFCDKISDQALTHIAQGLYRLRSLSLNQ 464
Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 316
C I D G++ + + EL + +G +
Sbjct: 465 CQITDHGMLKIAKALH----ELENLNIGHAA 491
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 83/251 (33%), Positives = 118/251 (47%), Gaps = 54/251 (21%)
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSG--LTNLKSLQIS-CSKVTDSGIAYL-KGLQKLTL 208
G+ L SLN+ C + D ++ L NLK+L +S C ++TD+ + + + L+ L
Sbjct: 238 GVPALTSLNLSGCFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLRNLET 297
Query: 209 LNLEGC-PVTAACLDSLS-ALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNEIT 265
L L GC +T L ++ L L +LNL C +SD G IG L GF+ T
Sbjct: 298 LELGGCCNITNTGLLLIAWGLKKLKHLNLRSCWHISDQG------IGHLA----GFSRET 347
Query: 266 DECLVHLKGLTNLESLNLDSCG-IGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLSG 322
E G LE L L C + DE L ++ GL +LK + LS V SGL+HL+
Sbjct: 348 AE------GNLQLEYLGLQDCQRLSDEALGHIAQGLTSLKSINLSFCVSVTDSGLKHLAR 401
Query: 323 LTNLESINL--------------------------SF-TGISDGSLRKLA-GLSSLKSLN 354
+ LE +NL SF ISD +L +A GL L+SL+
Sbjct: 402 MPKLEQLNLRSCDNISDIGMAYLTEGGSGINSLDVSFCDKISDQALTHIAQGLYRLRSLS 461
Query: 355 LDARQITDTGL 365
L+ QITD G+
Sbjct: 462 LNQCQITDHGM 472
>gi|290980745|ref|XP_002673092.1| predicted protein [Naegleria gruberi]
gi|284086673|gb|EFC40348.1| predicted protein [Naegleria gruberi]
Length = 498
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 71/301 (23%), Positives = 143/301 (47%), Gaps = 3/301 (0%)
Query: 94 ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
I G +++ GL LT L+ R N IT G K + + L L++ G + G
Sbjct: 189 IGPEGAKYISGLEQLTFLNIRAN-EITVDGAKFISEMKQLTVLNIIGNNICDEGAKFISG 247
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
+ +L +L+I N I ++ K +S + N+ L I + + D G+ +++LT LN+
Sbjct: 248 MKQLTNLDIS-VNNIGENGAKYVSEMMNITKLNIGFNSIND-GVKCFGEMKQLTDLNVNS 305
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
+ + ++ +S+ L +L++ + +S S++ +L L++ N+I D + +
Sbjct: 306 RCIGSNGVEYISSFNQLTHLSIAKNLISLYEAMHISQMKNLIKLDISDNDIGDNGVQSIS 365
Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333
+ L LN+ S I G+ + + NL L + +G+ G + +S + +L +++
Sbjct: 366 EMNQLTELNVSSIDITPIGIQYICKMDNLTYLISAHNNIGAKGAKQISEMKHLAQLSIYH 425
Query: 334 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
+ D + ++ + L L++ +I D G+ L + LT L+ I+D G Y+R
Sbjct: 426 NAVGDEGAKFISEMEQLTFLDIGYNEIGDEGVKFLCGMKQLTRLNTVDNNISDEGEKYIR 485
Query: 394 S 394
Sbjct: 486 E 486
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 104/229 (45%), Gaps = 26/229 (11%)
Query: 176 LSGLTNLKSLQISC-SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
L + LK L I S + SG Y+ L++LT L + C L +L SL YL
Sbjct: 100 LDSMKELKKLNIEYNSNIDPSGFKYICSLEQLTDLYMTFCYFRLPIAKHLPSLKSLTYLL 159
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG----- 289
+ + +G + ++ LK L++ N I E ++ GL L LN+ + I
Sbjct: 160 ITGNYIGVEGAKYIGEMKQLKQLHIANNNIGPEGAKYISGLEQLTFLNIRANEITVDGAK 219
Query: 290 -------------------DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 330
DEG ++G+ L L++S +G +G +++S + N+ +N
Sbjct: 220 FISEMKQLTVLNIIGNNICDEGAKFISGMKQLTNLDISVNNIGENGAKYVSEMMNITKLN 279
Query: 331 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
+ F I+DG ++ + L LN+++R I G+ ++S LTHL +
Sbjct: 280 IGFNSINDG-VKCFGEMKQLTDLNVNSRCIGSNGVEYISSFNQLTHLSI 327
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 65/288 (22%), Positives = 131/288 (45%), Gaps = 3/288 (1%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
+I+ G + + + LT L+ NN I +G K +G+ L LD+ G +
Sbjct: 212 EITVDGAKFISEMKQLTVLNIIGNN-ICDEGAKFISGMKQLTNLDISVNNIGENGAKYVS 270
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
+M + LNI + N I D +K + L L ++ + +G+ Y+ +LT L++
Sbjct: 271 EMMNITKLNIGF-NSINDG-VKCFGEMKQLTDLNVNSRCIGSNGVEYISSFNQLTHLSIA 328
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
++ +S + +L L+++ + D+G + S++ L LN+ +IT + ++
Sbjct: 329 KNLISLYEAMHISQMKNLIKLDISDNDIGDNGVQSISEMNQLTELNVSSIDITPIGIQYI 388
Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 332
+ NL L IG +G ++ + +L L + VG G + +S + L +++
Sbjct: 389 CKMDNLTYLISAHNNIGAKGAKQISEMKHLAQLSIYHNAVGDEGAKFISEMEQLTFLDIG 448
Query: 333 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 380
+ I D ++ L G+ L LN I+D G + + H+ ++
Sbjct: 449 YNEIGDEGVKFLCGMKQLTRLNTVDNNISDEGEKYIREMNLADHVGIY 496
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/268 (23%), Positives = 124/268 (46%), Gaps = 6/268 (2%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L +++ G+++ D G + L +LD + I + G +++ + N+T L+
Sbjct: 222 SEMKQLTVLNIIGNNICDEGAKFISGMKQLTNLDISVN-NIGENGAKYVSEMMNITKLNI 280
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLE-RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 172
N+ G+K F + L L++ RC G+ + +L L+I N I+ +
Sbjct: 281 GFNS--INDGVKCFGEMKQLTDLNVNSRCIG-SNGVEYISSFNQLTHLSIAK-NLISLYE 336
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
+S + NL L IS + + D+G+ + + +LT LN+ +T + + + +L Y
Sbjct: 337 AMHISQMKNLIKLDISDNDIGDNGVQSISEMNQLTELNVSSIDITPIGIQYICKMDNLTY 396
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
L + G ++ S++ L L++ N + DE + + L L++ IGDEG
Sbjct: 397 LISAHNNIGAKGAKQISEMKHLAQLSIYHNAVGDEGAKFISEMEQLTFLDIGYNEIGDEG 456
Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHL 320
+ L G+ L L D + G +++
Sbjct: 457 VKFLCGMKQLTRLNTVDNNISDEGEKYI 484
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 87/197 (44%), Gaps = 4/197 (2%)
Query: 197 IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN-RCQLSDDGCEKFSKIGSLK 255
+ +L+ + L ++N E LDS+ L L N+ + G + + L
Sbjct: 76 LPFLENIANLRVINNEEIGFNCEILDSMKELKKL---NIEYNSNIDPSGFKYICSLEQLT 132
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 315
L + F HL L +L L + IG EG + + LK L +++ +G
Sbjct: 133 DLYMTFCYFRLPIAKHLPSLKSLTYLLITGNYIGVEGAKYIGEMKQLKQLHIANNNIGPE 192
Query: 316 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 375
G +++SGL L +N+ I+ + ++ + L LN+ I D G ++ + LT
Sbjct: 193 GAKYISGLEQLTFLNIRANEITVDGAKFISEMKQLTVLNIIGNNICDEGAKFISGMKQLT 252
Query: 376 HLDLFGARITDSGAAYL 392
+LD+ I ++GA Y+
Sbjct: 253 NLDISVNNIGENGAKYV 269
>gi|28210241|ref|NP_781185.1| internalin A-like protein/ S-layer protein [Clostridium tetani E88]
gi|28202677|gb|AAO35122.1| internalin A-like protein/putative S-layer protein [Clostridium
tetani E88]
Length = 695
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 106/328 (32%), Positives = 161/328 (49%), Gaps = 45/328 (13%)
Query: 72 SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLI 131
S L LK NL++L + + LE LRGL+NL +L N + LI
Sbjct: 372 SNLEPLKSMDNLENL---YLTKTKVVSLEPLRGLTNLKALVI---NETNVSDLTPIKNLI 425
Query: 132 NLVKLDLERCTRIHGGLVNLKG---LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
NL ER T LV+L G L+ LESL+I N S++ + LTNLKSL I+
Sbjct: 426 NL-----ERLTLGDNKLVSLAGIENLVNLESLDINKNNV---SNLASIRDLTNLKSLNIN 477
Query: 189 CSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 247
+ VTD S + LK L++++ LN G L +L+AL L ++ L+
Sbjct: 478 ENNVTDLSVVTNLKNLERIS-LNKNGV----TSLGALAALPELEWVTAKENGLT------ 526
Query: 248 FSKIG-----SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
S +G LK L L N+I+D L L LT+LE+L+L + I D + +L+ L +
Sbjct: 527 -STVGLQNALKLKELFLDSNQISD--LSSLANLTSLETLSLRTNNISD--VSSLSDLTRM 581
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
K L L +GS + L+ + NL + + ISD S +A + +LK+L++ +++
Sbjct: 582 KNLYLHKNNIGS--IAPLASMENLTRLYVGKNNISDIS--AVANMKNLKTLSIGENMVSN 637
Query: 363 TGLAALTSLTGLTHLDLFGARITDSGAA 390
G ++ L L LD+ ITD+ A
Sbjct: 638 IG--PVSGLQSLETLDVADNFITDASPA 663
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 87/290 (30%), Positives = 141/290 (48%), Gaps = 38/290 (13%)
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
+ + AG+ NL+ DL + NL+ L +++L + ++PL GLTN
Sbjct: 347 KNVTNLAGIENLI--DLRVLNAGKNNISNLEPLKSMDNLENLYLTKTKVVSLEPLRGLTN 404
Query: 182 LKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
LK+L I+ + V+D + I L L++LTL + V+ A +++L L S L++N+ +
Sbjct: 405 LKALVINETNVSDLTPIKNLINLERLTL--GDNKLVSLAGIENLVNLES---LDINKNNV 459
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI------------ 288
S+ + +LK LN+ N +TD +V L NLE ++L+ G+
Sbjct: 460 SN--LASIRDLTNLKSLNINENNVTDLSVVT--NLKNLERISLNKNGVTSLGALAALPEL 515
Query: 289 -----GDEGLVNLTGLCN---LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 340
+ GL + GL N LK L L Q+ S L L+ LT+LE+++L ISD S
Sbjct: 516 EWVTAKENGLTSTVGLQNALKLKELFLDSNQI--SDLSSLANLTSLETLSLRTNNISDVS 573
Query: 341 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 390
L+ L+ +K+L L I +A L S+ LT L + I+D A
Sbjct: 574 --SLSDLTRMKNLYLHKNNI--GSIAPLASMENLTRLYVGKNNISDISAV 619
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 76/259 (29%), Positives = 130/259 (50%), Gaps = 27/259 (10%)
Query: 135 KLDLERCTRIH---GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 191
K DL+R T++ + NL G+ L L + S+++PL + NL++L ++ +K
Sbjct: 333 KADLQRVTQLDLWDKNVTNLAGIENLIDLRVLNAGKNNISNLEPLKSMDNLENLYLTKTK 392
Query: 192 VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI 251
V + L+GL NL+ + + L+ + +L +NL R L D+ + I
Sbjct: 393 VV--SLEPLRGLT-----NLKALVINETNVSDLTPIKNL--INLERLTLGDNKLVSLAGI 443
Query: 252 G---SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE-L 307
+L+ L++ N +++ L ++ LTNL+SLN++ + D L+ + NLK LE +
Sbjct: 444 ENLVNLESLDINKNNVSN--LASIRDLTNLKSLNINENNVTD-----LSVVTNLKNLERI 496
Query: 308 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 367
S + G + L L+ L LE + G++ S L LK L LD+ QI+D L++
Sbjct: 497 SLNKNGVTSLGALAALPELEWVTAKENGLT--STVGLQNALKLKELFLDSNQISD--LSS 552
Query: 368 LTSLTGLTHLDLFGARITD 386
L +LT L L L I+D
Sbjct: 553 LANLTSLETLSLRTNNISD 571
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 114/428 (26%), Positives = 181/428 (42%), Gaps = 117/428 (27%)
Query: 57 SSLLSVDLSGSDVTD----SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS 112
+L S+DLS +++ D SGL +LK+ + ++ +I+D ++ L GL NL L+
Sbjct: 103 ENLQSLDLSNNEIKDLGSLSGLKYLKELTLYKN-------KITD--VKALDGLKNLEKLN 153
Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERCT-------------RI----HGGLVNLKGLM 155
R N +G+K GL L +LDL + + RI G+ N + L
Sbjct: 154 LRDNKVKNIEGLK---GLEKLRELDLGKNSVFQPKPLKDLKNLRILNLESNGIGNAEDLE 210
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215
+L+ + + T D++PL LTN+ L + + VT I LK + L LN+
Sbjct: 211 ELKQVEHLILSNNTVDDVEPLLTLTNVNKLYLDDNPVT--HIGKLKDMTNLKRLNINNDS 268
Query: 216 VTA-ACLDSLSALGSLFYLN----LNRCQLSD---------------------DGCEK-- 247
+ A L L L + N L+ +L+D D EK
Sbjct: 269 IEDLAELKKFKNLQWLKFKNQEMVLDNKKLNDLLVDPNKEVKFADKNLEFAIRDKIEKPK 328
Query: 248 --------------------------FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 281
+ L+VLN G N I++ L LK + NLE+L
Sbjct: 329 GAIKKADLQRVTQLDLWDKNVTNLAGIENLIDLRVLNAGKNNISN--LEPLKSMDNLENL 386
Query: 282 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQV-----------------GSSGLRHLSG-- 322
L + L L GL NLK L +++T V G + L L+G
Sbjct: 387 YLTKTKVV--SLEPLRGLTNLKALVINETNVSDLTPIKNLINLERLTLGDNKLVSLAGIE 444
Query: 323 -LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 381
L NLES++++ +S+ L + L++LKSLN++ +TD L+ +T+L L + L
Sbjct: 445 NLVNLESLDINKNNVSN--LASIRDLTNLKSLNINENNVTD--LSVVTNLKNLERISLNK 500
Query: 382 ARITDSGA 389
+T GA
Sbjct: 501 NGVTSLGA 508
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 69/220 (31%), Positives = 103/220 (46%), Gaps = 40/220 (18%)
Query: 172 DMKPLSGLT---NLKSLQISCSKVTDSG-IAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
++K +SGL NL+SL +S +++ D G ++ LK L++LTL + V A L L
Sbjct: 92 NIKDISGLEFFENLQSLDLSNNEIKDLGSLSGLKYLKELTLYKNKITDVKA-----LDGL 146
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
+L LNL ++ + E + L+ L+LG N + LK L NL LNL+S G
Sbjct: 147 KNLEKLNLRDNKVKN--IEGLKGLEKLRELDLGKNSVFQPK--PLKDLKNLRILNLESNG 202
Query: 288 IGD----------EGLV----------NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 327
IG+ E L+ L L N+ L L D V G L +TNL+
Sbjct: 203 IGNAEDLEELKQVEHLILSNNTVDDVEPLLTLTNVNKLYLDDNPVTHIG--KLKDMTNLK 260
Query: 328 SINLSFTGISD-GSLRKLAGLSSLKSLN----LDARQITD 362
+N++ I D L+K L LK N LD +++ D
Sbjct: 261 RLNINNDSIEDLAELKKFKNLQWLKFKNQEMVLDNKKLND 300
>gi|321455314|gb|EFX66450.1| hypothetical protein DAPPUDRAFT_302690 [Daphnia pulex]
Length = 397
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 100/316 (31%), Positives = 157/316 (49%), Gaps = 43/316 (13%)
Query: 61 SVDLSGS-DVTDSGLIHL--KDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRN 116
S+DLSG +VTD G+ H D L+ L+ + C QI+D L L + L L
Sbjct: 98 SLDLSGCFNVTDIGIAHALTADVPTLKRLNLSLCKQITDSSLSKLAQYCRQLQELDLGGC 157
Query: 117 NAITAQGMKAFA-GLINLVKLDLERCTRIHG-GLVNLKGL-------MKLESLNIKWCNC 167
+T G+ A GL +L L+L C + G+ +L GL + LE L ++ C
Sbjct: 158 CNVTNAGLLLIAWGLKSLKSLNLRSCWHVSDLGIASLAGLGSDAEGNLALEHLGLQDCQK 217
Query: 168 ITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
+TD + +S GL LKS+ +S C ++DSG+ YL + L LNL C D++S
Sbjct: 218 LTDDALMHVSTGLKQLKSINLSFCLSISDSGLKYLAKMPSLAELNLRSC-------DNIS 270
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHL-KGLTNLESLNL 283
+G + YL E S+I SL V F + I D+ +VH+ +GL +L+ L+L
Sbjct: 271 DVG-MAYL-----------AEGGSRITSLDV---SFCDRIDDQAVVHVAQGLVHLKQLSL 315
Query: 284 DSCGIGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLS-GLTNLESINL-SFTGISDG 339
+C + DEGL+ + L +L+ L + +++ ++ ++ L L I+L T I+
Sbjct: 316 SACHVSDEGLIRVALSLLDLQTLNIGQCSRITDRSIQAVADHLRKLRCIDLYGCTKITTS 375
Query: 340 SLRKLAGLSSLKSLNL 355
L K+ L L LNL
Sbjct: 376 GLEKIMKLPELSVLNL 391
>gi|283778456|ref|YP_003369211.1| hypothetical protein Psta_0665 [Pirellula staleyi DSM 6068]
gi|283436909|gb|ADB15351.1| hypothetical protein Psta_0665 [Pirellula staleyi DSM 6068]
Length = 397
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 61/227 (26%), Positives = 111/227 (48%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
TD + L + L+ + IS + ++ +G+A L ++L ++L G + L +++
Sbjct: 120 RAFTDKCIDELIKVHQLRGVSISKTSISPAGLARLASCRELVSISLWGPEIEDDHLKAVA 179
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
+ S+ +L + R ++D+G + F++ +L L + ITD L L L L L L
Sbjct: 180 GIPSVQHLQVIRSSITDEGLQHFAERENLATLEIYVAAITDAGLKSLVNLPKLRKLELLG 239
Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 345
+ D+ + + +L+ L L + GL LS LE + +S I KL
Sbjct: 240 TSVTDQSMPTIGRFRSLRQLRLDAHSISDEGLTFLSRNEKLEVLLVSGCPIDGTGFAKLC 299
Query: 346 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
L +L+ ++ + I D GLAA+ SL GLT L++ +++T G +L
Sbjct: 300 ELQNLRLVDASSTNINDEGLAAIASLPGLTLLEIRQSKVTGKGLQHL 346
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 83/311 (26%), Positives = 139/311 (44%), Gaps = 25/311 (8%)
Query: 40 QYPGVND---------KWMDVIASQ--GSSLLSVDL----SGSDVTDSGLIH-LKDCSNL 83
+YP V D +W+ + + G+++L+V SG D+ +H ++D S L
Sbjct: 59 EYPNVIDGSIQQSNQPRWLRYLFGENFGANVLTVTARGTSSGDDIEGVHQLHGIRDIS-L 117
Query: 84 QSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTR 143
F +D ++ L + L +S + +I+ G+ A LV + L
Sbjct: 118 HGRAF------TDKCIDELIKVHQLRGVSISKT-SISPAGLARLASCRELVSISLWGPEI 170
Query: 144 IHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGL 203
L + G+ ++ L + + ITD ++ + NL +L+I + +TD+G+ L L
Sbjct: 171 EDDHLKAVAGIPSVQHLQVI-RSSITDEGLQHFAERENLATLEIYVAAITDAGLKSLVNL 229
Query: 204 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE 263
KL L L G VT + ++ SL L L+ +SD+G S+ L+VL +
Sbjct: 230 PKLRKLELLGTSVTDQSMPTIGRFRSLRQLRLDAHSISDEGLTFLSRNEKLEVLLVSGCP 289
Query: 264 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 323
I L L NL ++ S I DEGL + L L LE+ ++V GL+HL
Sbjct: 290 IDGTGFAKLCELQNLRLVDASSTNINDEGLAAIASLPGLTLLEIRQSKVTGKGLQHLERS 349
Query: 324 TNLESINLSFT 334
L S+ +S T
Sbjct: 350 EQLRSLLISIT 360
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 96/208 (46%), Gaps = 1/208 (0%)
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK 205
GL L +L S+++ W I D +K ++G+ +++ LQ+ S +TD G+ + +
Sbjct: 149 AGLARLASCRELVSISL-WGPEIEDDHLKAVAGIPSVQHLQVIRSSITDEGLQHFAEREN 207
Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265
L L + +T A L SL L L L L ++D + SL+ L L + I+
Sbjct: 208 LATLEIYVAAITDAGLKSLVNLPKLRKLELLGTSVTDQSMPTIGRFRSLRQLRLDAHSIS 267
Query: 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 325
DE L L LE L + C I G L L NL+ ++ S T + GL ++ L
Sbjct: 268 DEGLTFLSRNEKLEVLLVSGCPIDGTGFAKLCELQNLRLVDASSTNINDEGLAAIASLPG 327
Query: 326 LESINLSFTGISDGSLRKLAGLSSLKSL 353
L + + + ++ L+ L L+SL
Sbjct: 328 LTLLEIRQSKVTGKGLQHLERSEQLRSL 355
Score = 74.3 bits (181), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 95/198 (47%), Gaps = 3/198 (1%)
Query: 195 SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL 254
G+ L G++ ++L G T C+D L + L +++++ +S G + + L
Sbjct: 104 EGVHQLHGIRDISL---HGRAFTDKCIDELIKVHQLRGVSISKTSISPAGLARLASCREL 160
Query: 255 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 314
++L EI D+ L + G+ +++ L + I DEGL + NL LE+ +
Sbjct: 161 VSISLWGPEIEDDHLKAVAGIPSVQHLQVIRSSITDEGLQHFAERENLATLEIYVAAITD 220
Query: 315 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 374
+GL+ L L L + L T ++D S+ + SL+ L LDA I+D GL L+ L
Sbjct: 221 AGLKSLVNLPKLRKLELLGTSVTDQSMPTIGRFRSLRQLRLDAHSISDEGLTFLSRNEKL 280
Query: 375 THLDLFGARITDSGAAYL 392
L + G I +G A L
Sbjct: 281 EVLLVSGCPIDGTGFAKL 298
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 70/146 (47%)
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
S D E ++ ++ ++L TD+C+ L + L +++ I GL L
Sbjct: 99 SGDDIEGVHQLHGIRDISLHGRAFTDKCIDELIKVHQLRGVSISKTSISPAGLARLASCR 158
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
L + L ++ L+ ++G+ +++ + + + I+D L+ A +L +L + I
Sbjct: 159 ELVSISLWGPEIEDDHLKAVAGIPSVQHLQVIRSSITDEGLQHFAERENLATLEIYVAAI 218
Query: 361 TDTGLAALTSLTGLTHLDLFGARITD 386
TD GL +L +L L L+L G +TD
Sbjct: 219 TDAGLKSLVNLPKLRKLELLGTSVTD 244
>gi|290998898|ref|XP_002682017.1| predicted protein [Naegleria gruberi]
gi|284095643|gb|EFC49273.1| predicted protein [Naegleria gruberi]
Length = 408
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 66/239 (27%), Positives = 123/239 (51%), Gaps = 2/239 (0%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
+ +L SLNI N I K +S +T L SL IS +++ G ++ +++LT L++
Sbjct: 130 MKQLTSLNIS-DNQIGLEGAKYISEMTQLTSLDISVNRIGVEGAKFISEMKQLTSLDISV 188
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
+ + +S + L L+++ Q+ +G + S++ L L++ N I E +
Sbjct: 189 NRIGVEGVKFISEMKQLTSLDISDNQIGLEGSKYISEMTQLTSLDISVNRIGVEGAKFIS 248
Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333
+ L SLN+ IG EG+ ++ + L L++SD Q+G G +++S +T L S+++S
Sbjct: 249 EMKQLTSLNISVNRIGVEGVKFISEMKQLTSLDISDNQIG-LGAKYISEMTQLTSLDISV 307
Query: 334 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
I D + ++ + L SL++ QI G ++ +T LT L + RI GA ++
Sbjct: 308 NRIGDEGAKFISEMKQLTSLDICDNQIGVEGAKFISEMTQLTSLVITSNRIGVEGAKFI 366
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 73/281 (25%), Positives = 139/281 (49%), Gaps = 5/281 (1%)
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH-GGLVNLKGLMKLESLNIK 163
+ LTSL+ +N I +G K + + L LD+ RI G + + +L SL+I
Sbjct: 130 MKQLTSLNIS-DNQIGLEGAKYISEMTQLTSLDIS-VNRIGVEGAKFISEMKQLTSLDIS 187
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
N I +K +S + L SL IS +++ G Y+ + +LT L++ +
Sbjct: 188 -VNRIGVEGVKFISEMKQLTSLDISDNQIGLEGSKYISEMTQLTSLDISVNRIGVEGAKF 246
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
+S + L LN++ ++ +G + S++ L L++ N+I ++ +T L SL++
Sbjct: 247 ISEMKQLTSLNISVNRIGVEGVKFISEMKQLTSLDISDNQIGLGA-KYISEMTQLTSLDI 305
Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
IGDEG ++ + L L++ D Q+G G + +S +T L S+ ++ I +
Sbjct: 306 SVNRIGDEGAKFISEMKQLTSLDICDNQIGVEGAKFISEMTQLTSLVITSNRIGVEGAKF 365
Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 384
++ + L SL++ +I D G+ ++ + LT L++ RI
Sbjct: 366 ISEMKQLTSLDISGNRIGDEGVKFISEMKQLTSLNISVNRI 406
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 93/184 (50%), Gaps = 7/184 (3%)
Query: 215 PVTAACLDSL------SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 268
V+ LDSL S + L LN++ Q+ +G + S++ L L++ N I E
Sbjct: 112 KVSRRLLDSLEQPKFISEMKQLTSLNISDNQIGLEGAKYISEMTQLTSLDISVNRIGVEG 171
Query: 269 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 328
+ + L SL++ IG EG+ ++ + L L++SD Q+G G +++S +T L S
Sbjct: 172 AKFISEMKQLTSLDISVNRIGVEGVKFISEMKQLTSLDISDNQIGLEGSKYISEMTQLTS 231
Query: 329 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 388
+++S I + ++ + L SLN+ +I G+ ++ + LT LD+ +I G
Sbjct: 232 LDISVNRIGVEGAKFISEMKQLTSLNISVNRIGVEGVKFISEMKQLTSLDISDNQI-GLG 290
Query: 389 AAYL 392
A Y+
Sbjct: 291 AKYI 294
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 68/261 (26%), Positives = 123/261 (47%), Gaps = 6/261 (2%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ + L S+D+S + + G + + L SLD + +I G++ + + LTSL
Sbjct: 152 SEMTQLTSLDISVNRIGVEGAKFISEMKQLTSLDISVN-RIGVEGVKFISEMKQLTSLDI 210
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIH-GGLVNLKGLMKLESLNIKWCNCITDSD 172
+N I +G K + + L LD+ RI G + + +L SLNI N I
Sbjct: 211 S-DNQIGLEGSKYISEMTQLTSLDIS-VNRIGVEGAKFISEMKQLTSLNIS-VNRIGVEG 267
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
+K +S + L SL IS +++ G Y+ + +LT L++ + +S + L
Sbjct: 268 VKFISEMKQLTSLDISDNQI-GLGAKYISEMTQLTSLDISVNRIGDEGAKFISEMKQLTS 326
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
L++ Q+ +G + S++ L L + N I E + + L SL++ IGDEG
Sbjct: 327 LDICDNQIGVEGAKFISEMTQLTSLVITSNRIGVEGAKFISEMKQLTSLDISGNRIGDEG 386
Query: 293 LVNLTGLCNLKCLELSDTQVG 313
+ ++ + L L +S ++G
Sbjct: 387 VKFISEMKQLTSLNISVNRIG 407
>gi|320170955|gb|EFW47854.1| hypothetical protein CAOG_05792 [Capsaspora owczarzaki ATCC 30864]
Length = 727
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 88/303 (29%), Positives = 121/303 (39%), Gaps = 10/303 (3%)
Query: 85 SLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL--ERCT 142
SL N I G L L +L F N IT+ AF L L L L + T
Sbjct: 122 SLSSNQITSIPAGAFTDLTALRSL----FLYANLITSISANAFTSLTALTYLHLYGNQIT 177
Query: 143 RIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKG 202
I L L +L N N IT + LT L L + +++T G
Sbjct: 178 SISNAFTGLTALTELHLYN----NHITSISANAFTDLTALTELSLISNQITSIPADTFTG 233
Query: 203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 262
L LT L L +T+ D+ + L +L YL+LN ++ F+ + +L L+ N
Sbjct: 234 LTALTYLYLNSNQITSIPADTFTGLTALTYLSLNSNSITSIAATAFTDLTALTYLSFNSN 293
Query: 263 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 322
IT GLT L L S I GL L L L Q+ S +G
Sbjct: 294 SITSISANAFAGLTALTYLFFSSNLITSISANAFAGLTALTYLSLGSNQITSIPAGTFTG 353
Query: 323 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 382
+T L ++L I+ GL++L L L QIT ++ T+LT LT+L L
Sbjct: 354 VTALTYLSLDSNQITSIPADTFTGLTALTYLYLGTNQITSLPSSSFTNLTALTYLVLQSN 413
Query: 383 RIT 385
IT
Sbjct: 414 PIT 416
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 91/327 (27%), Positives = 132/327 (40%), Gaps = 32/327 (9%)
Query: 85 SLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCT 142
SLD+N I + GL+ LT LS N IT+ F G+ L L L + T
Sbjct: 74 SLDYNLITSIPA---DAFTGLTALTYLSLYAN-PITSIPAGTFTGVTALTYLSLSSNQIT 129
Query: 143 RIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAY--- 199
I G L L SL + + N IT + LT L L + +++T A+
Sbjct: 130 SIPAGA--FTDLTALRSLFL-YANLITSISANAFTSLTALTYLHLYGNQITSISNAFTGL 186
Query: 200 --------------------LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 239
L LT L+L +T+ D+ + L +L YL LN Q
Sbjct: 187 TALTELHLYNNHITSISANAFTDLTALTELSLISNQITSIPADTFTGLTALTYLYLNSNQ 246
Query: 240 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 299
++ + F+ + +L L+L N IT LT L L+ +S I GL
Sbjct: 247 ITSIPADTFTGLTALTYLSLNSNSITSIAATAFTDLTALTYLSFNSNSITSISANAFAGL 306
Query: 300 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 359
L L S + S +GLT L ++L I+ G+++L L+LD+ Q
Sbjct: 307 TALTYLFFSSNLITSISANAFAGLTALTYLSLGSNQITSIPAGTFTGVTALTYLSLDSNQ 366
Query: 360 ITDTGLAALTSLTGLTHLDLFGARITD 386
IT T LT LT+L L +IT
Sbjct: 367 ITSIPADTFTGLTALTYLYLGTNQITS 393
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 79/289 (27%), Positives = 126/289 (43%), Gaps = 7/289 (2%)
Query: 92 IQISDGGLEHLR-GLSNLTSLSFRRNNAITAQGMKAFAGL--INLVKLDLERCTRIHGGL 148
+ S G L + G+ T+ + +N IT+ AF GL + + LD T I
Sbjct: 28 VTCSGGSLTAIPSGIPTDTTKLYINSNPITSIPTNAFTGLTALTFLSLDYNLITSIPADA 87
Query: 149 VNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTL 208
GL L L++ + N IT +G+T L L +S +++T L L
Sbjct: 88 --FTGLTALTYLSL-YANPITSIPAGTFTGVTALTYLSLSSNQITSIPAGAFTDLTALRS 144
Query: 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 268
L L +T+ ++ ++L +L YL+L Q++ F+ + +L L+L N IT
Sbjct: 145 LFLYANLITSISANAFTSLTALTYLHLYGNQITSIS-NAFTGLTALTELHLYNNHITSIS 203
Query: 269 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 328
LT L L+L S I TGL L L L+ Q+ S +GLT L
Sbjct: 204 ANAFTDLTALTELSLISNQITSIPADTFTGLTALTYLYLNSNQITSIPADTFTGLTALTY 263
Query: 329 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 377
++L+ I+ + L++L L+ ++ IT A LT LT+L
Sbjct: 264 LSLNSNSITSIAATAFTDLTALTYLSFNSNSITSISANAFAGLTALTYL 312
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 57/125 (45%)
Query: 262 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 321
N IT GLT L L+LD I TGL L L L + S +
Sbjct: 54 NPITSIPTNAFTGLTALTFLSLDYNLITSIPADAFTGLTALTYLSLYANPITSIPAGTFT 113
Query: 322 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 381
G+T L ++LS I+ L++L+SL L A IT A TSLT LT+L L+G
Sbjct: 114 GVTALTYLSLSSNQITSIPAGAFTDLTALRSLFLYANLITSISANAFTSLTALTYLHLYG 173
Query: 382 ARITD 386
+IT
Sbjct: 174 NQITS 178
>gi|217965469|ref|YP_002351147.1| internalin-A [Listeria monocytogenes HCC23]
gi|386007166|ref|YP_005925444.1| internalin A [Listeria monocytogenes L99]
gi|386025755|ref|YP_005946531.1| internalin A [Listeria monocytogenes M7]
gi|167861970|gb|ACA05684.1| InlA [Listeria monocytogenes]
gi|167861982|gb|ACA05690.1| InlA [Listeria monocytogenes]
gi|217334739|gb|ACK40533.1| internalin-A [Listeria monocytogenes HCC23]
gi|307569976|emb|CAR83155.1| internalin A [Listeria monocytogenes L99]
gi|336022336|gb|AEH91473.1| internalin A [Listeria monocytogenes M7]
Length = 800
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 109/333 (32%), Positives = 169/333 (50%), Gaps = 36/333 (10%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
L GL L LEL++ Q+ + +S L NL + L F ISD + ++ L+ L+ L
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRL 366
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
+++D +++L SLT + L +I+D
Sbjct: 367 FFYNNKVSD--VSSLASLTNINWLSAGHNQISD 397
>gi|22347570|gb|AAM95930.1| internalin A precursor [Listeria monocytogenes]
Length = 744
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 109/333 (32%), Positives = 169/333 (50%), Gaps = 36/333 (10%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 42 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 95
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 96 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 147
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 148 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 200
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 201 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 254
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
L GL L LEL++ Q+ + +S L NL + L F ISD + ++ L+ L+ L
Sbjct: 255 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRL 310
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
+++D +++L SLT + L +I+D
Sbjct: 311 FFYNNKVSD--VSSLASLTNINWLSAGHNQISD 341
>gi|290998998|ref|XP_002682067.1| predicted protein [Naegleria gruberi]
gi|284095693|gb|EFC49323.1| predicted protein [Naegleria gruberi]
Length = 427
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 82/310 (26%), Positives = 146/310 (47%), Gaps = 16/310 (5%)
Query: 92 IQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER--CTRIHGGLV 149
++I + G++ + L L SL + + + + + L +LD+ R C R +GG
Sbjct: 114 LKIGEDGIKAISQLKQLKSLYLYAD--VDSNALNGVFEMTQLTELDINRKQCHRWNGGFK 171
Query: 150 NLKGLMKLESLNIKWCNCITDSDM-KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTL 208
LK L L+ L C CI D+ + +S L L L I+ + + G + L+ LT+
Sbjct: 172 KLKQLTNLKKLCAVGC-CIDYEDVFQSISQLDQLTELHIASNSLYSDGAKLIGKLKNLTI 230
Query: 209 LNLEGCPVTAAC---LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265
L++ C V L+S+S L +L YL+ L G SK+ +L L + N I+
Sbjct: 231 LDISYCGVCIPHNEGLESISELINLTYLDCANNGLRSIG--PISKLENLTFLRVSLNRIS 288
Query: 266 --DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 323
DE +V LK LTNL+ + I D+ + + L L + + +G + +S +
Sbjct: 289 SLDESIVKLKKLTNLD---VGYNSISDQSAEVFSSMKQLTSLFIQENNIGDKSAKSISEI 345
Query: 324 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 383
+ L+++ + +SD + ++ + +L L++ I D G +LT LT L L +
Sbjct: 346 SQLKNLCIDSNIVSDKGAKSISTMENLTELDIRNNDIGDDGAKSLTRLTKLKTLRIAQNN 405
Query: 384 ITDSGAAYLR 393
I++ G L+
Sbjct: 406 ISEEGMMTLK 415
>gi|219821312|gb|ACL37786.1| internalin A [Listeria monocytogenes]
Length = 742
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 109/333 (32%), Positives = 169/333 (50%), Gaps = 36/333 (10%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQL--SFGNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 252
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
L GL L LEL++ Q+ + +S L NL + L F ISD + ++ L+ L+ L
Sbjct: 253 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRL 308
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
+++D +++L SLT + L +I+D
Sbjct: 309 FFYNNKVSD--VSSLASLTNINWLSAGHNQISD 339
>gi|167862040|gb|ACA05719.1| InlA [Listeria monocytogenes]
gi|194326153|emb|CAQ77235.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 117/358 (32%), Positives = 171/358 (47%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNY 424
>gi|313485061|gb|ADR53004.1| InlA [Listeria monocytogenes]
Length = 724
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 117/358 (32%), Positives = 171/358 (47%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNY 424
>gi|290972542|ref|XP_002669011.1| predicted protein [Naegleria gruberi]
gi|284082551|gb|EFC36267.1| predicted protein [Naegleria gruberi]
Length = 335
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 86/326 (26%), Positives = 156/326 (47%), Gaps = 32/326 (9%)
Query: 96 DGGLEHLRGLSNLTSLSFR--RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
D LE + +SN + L+ ++ +T Q A L NL L + RC+ G N+
Sbjct: 3 DCNLETINEISNHSKLTELCINSSELTPQSAHLIAKLSNLTNLSINRCSIADLGTNNISQ 62
Query: 154 LMKLESLNIKWC-------------------------NCITDSDMKPLSGLTNLKSLQIS 188
L +++ L + C N I D ++ + L+ L L +
Sbjct: 63 LKQIKYL--RACENGIGSIGARNIGEMKNLTLLELSGNRIGDDGLESIGKLSKLAYLDLG 120
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 248
+++TD G+ L L+KL LNL+ +T L+++S L L L++ ++ ++G +
Sbjct: 121 ENEITDQGLKSLNNLEKLVTLNLKNNKITN--LETISHL-KLTNLDVTTNKIGNEGAKYI 177
Query: 249 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 308
+++ LKVL + N IT + L G+T L + L IGDEG +++ L NL+ L+L
Sbjct: 178 AEMKRLKVLRINDNHITSDGAKILSGMTQLTCIFLCDNLIGDEGALSIGLLYNLEYLDLK 237
Query: 309 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 368
+ GL+ + L NL +++S ISD + ++G+++L +LN+ I G +
Sbjct: 238 GAGITGEGLKTICELINLRRLHVSHNQISDLGAKYISGMNNLTALNVCDCNIGFEGAQFI 297
Query: 369 TSLTGLTHLDLFGARITDSGAAYLRS 394
+++ L LD+ +T +G R+
Sbjct: 298 SNMQSLADLDITKNNLTTNGIKLCRN 323
>gi|219821396|gb|ACL37842.1| internalin A [Listeria monocytogenes]
Length = 739
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 117/358 (32%), Positives = 171/358 (47%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 252
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 253 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 310
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 311 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVKY 366
>gi|290994342|ref|XP_002679791.1| predicted protein [Naegleria gruberi]
gi|284093409|gb|EFC47047.1| predicted protein [Naegleria gruberi]
Length = 300
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 65/265 (24%), Positives = 133/265 (50%), Gaps = 2/265 (0%)
Query: 107 NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCN 166
NLTSL+ RN I +G K + L NL LD+ + G ++ + ++ +L++ N
Sbjct: 4 NLTSLNISRN-WIGEEGAKYISELDNLTILDIHGNDIVANGANHISKMKRITTLSV-GLN 61
Query: 167 CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 226
+ K +S + L +L+I+ + + + G ++ GL++LT L++ + LS
Sbjct: 62 NLGKEGTKYISEMKQLTNLEINNNNIQEEGAKFISGLKQLTELSIHFNNIGDVGTKHLSE 121
Query: 227 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 286
L L LN+ + D+G + ++ L L++ N I + ++ G+ L L+++SC
Sbjct: 122 LKQLTRLNIGENNIGDEGVKHILEMKQLTDLDISNNNIRHKGSEYISGMNQLRILDINSC 181
Query: 287 GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG 346
I G ++ + L L ++ Q G G + +S + L ++ L ISD + ++
Sbjct: 182 NIDPIGAQKISEMKQLTDLNIAWNQFGDEGAKFISDMKQLTTLELFNCDISDIGAKCVSE 241
Query: 347 LSSLKSLNLDARQITDTGLAALTSL 371
+S L +L++ ++D G+ A++++
Sbjct: 242 MSKLTNLDIGENNLSDEGVRAVSNM 266
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 61/233 (26%), Positives = 106/233 (45%), Gaps = 24/233 (10%)
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS----------------- 223
NL SL IS + + + G Y+ L LT+L++ G + A +
Sbjct: 4 NLTSLNISRNWIGEEGAKYISELDNLTILDIHGNDIVANGANHISKMKRITTLSVGLNNL 63
Query: 224 -------LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 276
+S + L L +N + ++G + S + L L++ FN I D HL L
Sbjct: 64 GKEGTKYISEMKQLTNLEINNNNIQEEGAKFISGLKQLTELSIHFNNIGDVGTKHLSELK 123
Query: 277 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 336
L LN+ IGDEG+ ++ + L L++S+ + G ++SG+ L ++++ I
Sbjct: 124 QLTRLNIGENNIGDEGVKHILEMKQLTDLDISNNNIRHKGSEYISGMNQLRILDINSCNI 183
Query: 337 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 389
+K++ + L LN+ Q D G ++ + LT L+LF I+D GA
Sbjct: 184 DPIGAQKISEMKQLTDLNIAWNQFGDEGAKFISDMKQLTTLELFNCDISDIGA 236
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 83/164 (50%)
Query: 229 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 288
+L LN++R + ++G + S++ +L +L++ N+I H+ + + +L++ +
Sbjct: 4 NLTSLNISRNWIGEEGAKYISELDNLTILDIHGNDIVANGANHISKMKRITTLSVGLNNL 63
Query: 289 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 348
G EG ++ + L LE+++ + G + +SGL L +++ F I D + L+ L
Sbjct: 64 GKEGTKYISEMKQLTNLEINNNNIQEEGAKFISGLKQLTELSIHFNNIGDVGTKHLSELK 123
Query: 349 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
L LN+ I D G+ + + LT LD+ I G+ Y+
Sbjct: 124 QLTRLNIGENNIGDEGVKHILEMKQLTDLDISNNNIRHKGSEYI 167
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 92/198 (46%), Gaps = 3/198 (1%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L +++++ +++ + G + L L +F I D G +HL L LT L+
Sbjct: 72 SEMKQLTNLEINNNNIQEEGAKFISGLKQLTELSIHFN-NIGDVGTKHLSELKQLTRLNI 130
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
NN I +G+K + L LD+ H G + G+ +L L+I CN I
Sbjct: 131 GENN-IGDEGVKHILEMKQLTDLDISNNNIRHKGSEYISGMNQLRILDINSCN-IDPIGA 188
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
+ +S + L L I+ ++ D G ++ +++LT L L C ++ +S + L L
Sbjct: 189 QKISEMKQLTDLNIAWNQFGDEGAKFISDMKQLTTLELFNCDISDIGAKCVSEMSKLTNL 248
Query: 234 NLNRCQLSDDGCEKFSKI 251
++ LSD+G S +
Sbjct: 249 DIGENNLSDEGVRAVSNM 266
Score = 39.3 bits (90), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 76/180 (42%), Gaps = 26/180 (14%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
+++ D G HL + L L+ I D G++H+ + LT L NN I +G +
Sbjct: 109 NNIGDVGTKHLSELKQLTRLNIGEN-NIGDEGVKHILEMKQLTDLDISNNN-IRHKGSEY 166
Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW---------------------- 164
+G+ L LD+ C G + + +L LNI W
Sbjct: 167 ISGMNQLRILDINSCNIDPIGAQKISEMKQLTDLNIAWNQFGDEGAKFISDMKQLTTLEL 226
Query: 165 CNC-ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
NC I+D K +S ++ L +L I + ++D G+ + + KL +L++ A D+
Sbjct: 227 FNCDISDIGAKCVSEMSKLTNLDIGENNLSDEGVRAVSNM-KLMILSVSSSKKGQAKKDA 285
>gi|326201424|ref|ZP_08191295.1| Dockerin type 1 [Clostridium papyrosolvens DSM 2782]
gi|325988024|gb|EGD48849.1| Dockerin type 1 [Clostridium papyrosolvens DSM 2782]
Length = 1098
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 111/375 (29%), Positives = 178/375 (47%), Gaps = 32/375 (8%)
Query: 10 IFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDV 69
I +L + + F D L+ + G +N D++ + SS+ S+ ++
Sbjct: 18 ILTQLFVHNAFADSDIVTFADPNLEAVVRG---AINKPTGDILKTDVSSITSIIAENKNI 74
Query: 70 TDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAG 129
+ L ++ +NL L + +ISD + L GL++L L+ ++N + A AG
Sbjct: 75 NN--LTGIECLTNLTMLSLSKN-KISD--VTPLAGLTSLKYLALYQSNI---SNINALAG 126
Query: 130 LINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISC 189
LINL LDL + + LK + KL L + W N +D+ LS LTNL+ LQ+ C
Sbjct: 127 LINLEYLDLGMNSV--SDISALKNMTKLTYLELSWNNI---TDISALSKLTNLQYLQLGC 181
Query: 190 SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 249
+++ D I+ + L KL L+L ++ + LS L +L YL+LN +S+ +
Sbjct: 182 NRIVD--ISPISNLTKLKTLHLFYNRISD--ISGLSGLKTLTYLHLNSNNVSN--INPLN 235
Query: 250 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EGLVNLTGLCNLKCLELS 308
+ L L+LGFN+ITD + L LT + L+L I + L NLT L +LK LE +
Sbjct: 236 GLTMLSYLDLGFNKITD--ISALNKLTKITDLDLSYNKITNINVLSNLTSLNDLK-LENN 292
Query: 309 DTQVGSSGLRHLSGLT----NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT--D 362
S +S LT NLE I+ ++ +L S ++A QIT D
Sbjct: 293 PINNYSPITGIISKLTKKDFNLEPISFPDADLAKAVCHQLGKNSEDMIYKIEAPQITVLD 352
Query: 363 TGLAALTSLTGLTHL 377
G + SL+G+ L
Sbjct: 353 AGNMEIKSLSGIEQL 367
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 95/338 (28%), Positives = 157/338 (46%), Gaps = 43/338 (12%)
Query: 71 DSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL 130
D G+ + D S L+++ +++S + + LS LT+L + + + + L
Sbjct: 134 DLGMNSVSDISALKNMTKLTYLELSWNNITDISALSKLTNLQYLQLGCNRIVDISPISNL 193
Query: 131 INLVKLDL--ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
L L L R + I G L GL L L++ N S++ PL+GLT L L +
Sbjct: 194 TKLKTLHLFYNRISDISG----LSGLKTLTYLHLNSNNV---SNINPLNGLTMLSYLDLG 246
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 248
+K+TD I+ L L K+T L+L +T ++ LS L S LN +L ++ +
Sbjct: 247 FNKITD--ISALNKLTKITDLDLSYNKITN--INVLSNLTS-----LNDLKLENNPINNY 297
Query: 249 SKIGSL------KVLNLGFNEITD----ECLVHLKG------LTNLESLNLDSCGIGDEG 292
S I + K NL D + + H G + +E+ + G+
Sbjct: 298 SPITGIISKLTKKDFNLEPISFPDADLAKAVCHQLGKNSEDMIYKIEAPQITVLDAGNME 357
Query: 293 LVNLTG---LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 349
+ +L+G LCNLK L L+ ++ + +S LT+LE++NL ISD L L L +
Sbjct: 358 IKSLSGIEQLCNLKDLYLAGNEL--DNINPISALTSLEALNLEKNQISD--LNVLRNLHN 413
Query: 350 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 387
LK L L +I+D + L+ L+ L LDL +T++
Sbjct: 414 LKYLILRDNKISD--ITPLSDLSSLKTLDLSYNSLTNT 449
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 101/187 (54%), Gaps = 14/187 (7%)
Query: 203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 262
L LT+L+L ++ L+ L SL YL L + +S+ + + +L+ L+LG N
Sbjct: 83 LTNLTMLSLSKNKISDVT--PLAGLTSLKYLALYQSNISN--INALAGLINLEYLDLGMN 138
Query: 263 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 322
++D + LK +T L L L I D + L+ L NL+ L+L ++ + +S
Sbjct: 139 SVSD--ISALKNMTKLTYLELSWNNITD--ISALSKLTNLQYLQLGCNRI--VDISPISN 192
Query: 323 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 382
LT L++++L + ISD + L+GL +L L+L++ +++ + L LT L++LDL
Sbjct: 193 LTKLKTLHLFYNRISD--ISGLSGLKTLTYLHLNSNNVSN--INPLNGLTMLSYLDLGFN 248
Query: 383 RITDSGA 389
+ITD A
Sbjct: 249 KITDISA 255
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 62/103 (60%), Gaps = 9/103 (8%)
Query: 290 DEGLVNLTG---LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG 346
++ + NLTG L NL L LS ++ S + L+GLT+L+ + L + IS+ + LAG
Sbjct: 71 NKNINNLTGIECLTNLTMLSLSKNKI--SDVTPLAGLTSLKYLALYQSNISN--INALAG 126
Query: 347 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 389
L +L+ L+L ++D ++AL ++T LT+L+L ITD A
Sbjct: 127 LINLEYLDLGMNSVSD--ISALKNMTKLTYLELSWNNITDISA 167
Score = 38.9 bits (89), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 66/124 (53%), Gaps = 11/124 (8%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
+ L LE+LN++ SD+ L L NLK L + +K++D I L L L L+
Sbjct: 386 ISALTSLEALNLEKNQI---SDLNVLRNLHNLKYLILRDNKISD--ITPLSDLSSLKTLD 440
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSD-DGCEKFSKIGSLKVLNLGFNEITDECL 269
L +T +LS L +L+ L+L+ +++D +G + +K LK+L L N+I D CL
Sbjct: 441 LSYNSLTNT--KNLSKLVNLYELHLDDNEINDINGLQNITK---LKILTLDKNQIQDVCL 495
Query: 270 VHLK 273
+ K
Sbjct: 496 LKNK 499
>gi|351713942|gb|EHB16861.1| F-box/LRR-repeat protein 14 [Heterocephalus glaber]
Length = 399
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 97/314 (30%), Positives = 165/314 (52%), Gaps = 31/314 (9%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
++ +N++SL+ + C ++D GL H ++ + +L +L+ IT + A + L
Sbjct: 86 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 145
Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LK 183
L+L C+ I G L+ GL +L+SLN++ C ++D + L+G+T L+
Sbjct: 146 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLE 205
Query: 184 SLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QL 240
L + C K+TD +G + LLNL C ++ A L LS +GSL LNL C +
Sbjct: 206 QLTLQDCQKLTDLSQHISRGRWRGRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNI 265
Query: 241 SDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGL--- 293
SD G + +GSL++ L++ F +++ D+ L ++ +GL L+SL+L SC I D+G+
Sbjct: 266 SDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRM 324
Query: 294 -VNLTGLCNL---KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 349
+ GL L +C+ ++D + HLS LT ++ T I+ L ++ L
Sbjct: 325 VRQMHGLRTLNIGQCVRITDKGLELIA-EHLSQLTGIDLYGC--TRITKRGLERITQLPC 381
Query: 350 LKSLNLDARQITDT 363
LK LNL Q+TD+
Sbjct: 382 LKVLNLGLWQMTDS 395
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 93/312 (29%), Positives = 145/312 (46%), Gaps = 59/312 (18%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + G ++ + L +
Sbjct: 68 RGIRRVQILSLRRSLSYVIQGMA------NIESLNLSGCYNLTDNGLGHAFVQEIGSLRA 121
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LN+ C ITDS + ++ LK L++ CS +T++G+ + GLQ+L LNL C
Sbjct: 122 LNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSC 179
Query: 215 P----VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL--------KVLNLGF- 261
V L ++ + L L + L D C+K + + ++LNL F
Sbjct: 180 RHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQD--CQKLTDLSQHISRGRWRGRLLNLSFC 237
Query: 262 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 321
I+D L+HL + +L SLNL SC +SDT G+ HL+
Sbjct: 238 GGISDAGLLHLSHMGSLRSLNLRSCD------------------NISDT-----GIMHLA 274
Query: 322 -GLTNLESINLSF-TGISDGSLRKLA-GLSSLKSLNLDARQITDTGLAALT-SLTGLTHL 377
G L +++SF + D SL +A GL LKSL+L + I+D G+ + + GL L
Sbjct: 275 MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTL 334
Query: 378 DLFG-ARITDSG 388
++ RITD G
Sbjct: 335 NIGQCVRITDKG 346
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 91/202 (45%), Gaps = 51/202 (25%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
++D+GL+HL +L+SL+ C ISD G+ HL
Sbjct: 240 ISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL------------------------AM 275
Query: 129 GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
G + L LD+ C ++ + +GL L+SL++ C+ D + + + L++L
Sbjct: 276 GSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLN 335
Query: 187 I-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 244
I C ++TD G+ + + L +LT ++L GC +++ G
Sbjct: 336 IGQCVRITDKGLELIAEHLSQLTGIDLYGCT-----------------------RITKRG 372
Query: 245 CEKFSKIGSLKVLNLGFNEITD 266
E+ +++ LKVLNLG ++TD
Sbjct: 373 LERITQLPCLKVLNLGLWQMTD 394
>gi|290892407|ref|ZP_06555401.1| InlA protein [Listeria monocytogenes FSL J2-071]
gi|290557973|gb|EFD91493.1| InlA protein [Listeria monocytogenes FSL J2-071]
Length = 796
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 117/358 (32%), Positives = 171/358 (47%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 101 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 154
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 155 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 206
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 207 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 259
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 260 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 313
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 314 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 371
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 372 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNY 427
>gi|430746592|ref|YP_007205721.1| WD40 repeat-containing protein [Singulisphaera acidiphila DSM
18658]
gi|430018312|gb|AGA30026.1| WD40 repeat-containing protein [Singulisphaera acidiphila DSM
18658]
Length = 830
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 67/226 (29%), Positives = 102/226 (45%), Gaps = 36/226 (15%)
Query: 158 ESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
+ L I I D+ ++ L+ L NL+ L I +++ G+A+L L KLT LNL
Sbjct: 623 KDLRIDSEEGIDDAGLEHLARLVNLEGLSIHQTARIRGPGLAHLAKLPKLTKLNLS---- 678
Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 276
LSD + + + LK L+L ++ D + LKG+T
Sbjct: 679 ---------------------SGLSDKAVARLAPLKELKRLSLDHTDLRDSGMAALKGMT 717
Query: 277 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 336
L L+LD + D GL L G+ ++ L L + V GL +L G++ L+S LSF +
Sbjct: 718 TLTELSLDETKVTDAGLSALKGMVQMERLSLGNVSVRGPGLANLKGMSRLKS--LSFVAV 775
Query: 337 S--------DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 374
+ D L L L +L LNL +TD G+AA + L
Sbjct: 776 AQYKPSPLTDAGLVHLENLPALDFLNLGETSVTDAGMAAARKIKPL 821
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 89/179 (49%), Gaps = 9/179 (5%)
Query: 123 GMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
G++ A L+NL L + + RI G GL +L L KL LN+ + ++D + L+ L
Sbjct: 637 GLEHLARLVNLEGLSIHQTARIRGPGLAHLAKLPKLTKLNL--SSGLSDKAVARLAPLKE 694
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
LK L + + + DSG+A LKG+ LT L+L+ VT A L +L + + L+L +
Sbjct: 695 LKRLSLDHTDLRDSGMAALKGMTTLTELSLDETKVTDAGLSALKGMVQMERLSLGNVSVR 754
Query: 242 DDGCEKFSKIGSLK------VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
G + LK V + +TD LVHL+ L L+ LNL + D G+
Sbjct: 755 GPGLANLKGMSRLKSLSFVAVAQYKPSPLTDAGLVHLENLPALDFLNLGETSVTDAGMA 813
Score = 71.2 bits (173), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 91/192 (47%), Gaps = 9/192 (4%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+ D+GL HL NL+ L + +I GL HL L LT L+ ++ ++ + + A
Sbjct: 633 IDDAGLEHLARLVNLEGLSIHQTARIRGPGLAHLAKLPKLTKLNL--SSGLSDKAVARLA 690
Query: 129 GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
L L +L L+ G+ LKG+ L L++ +TD+ + L G+ ++ L +
Sbjct: 691 PLKELKRLSLDHTDLRDSGMAALKGMTTLTELSLDETK-VTDAGLSALKGMVQMERLSLG 749
Query: 189 CSKVTDSGIAYLKGLQKLTLLNL------EGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
V G+A LKG+ +L L+ + P+T A L L L +L +LNL ++D
Sbjct: 750 NVSVRGPGLANLKGMSRLKSLSFVAVAQYKPSPLTDAGLVHLENLPALDFLNLGETSVTD 809
Query: 243 DGCEKFSKIGSL 254
G KI L
Sbjct: 810 AGMAAARKIKPL 821
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 77/160 (48%), Gaps = 8/160 (5%)
Query: 240 LSDDGCEKFSKIGSLKVLNLGFN-EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
+ D G E +++ +L+ L++ I L HL L L LNL S G+ D+ + L
Sbjct: 633 IDDAGLEHLARLVNLEGLSIHQTARIRGPGLAHLAKLPKLTKLNL-SSGLSDKAVARLAP 691
Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
L LK L L T + SG+ L G+T L ++L T ++D L L G+ ++ L+L
Sbjct: 692 LKELKRLSLDHTDLRDSGMAALKGMTTLTELSLDETKVTDAGLSALKGMVQMERLSLGNV 751
Query: 359 QITDTGLAALTSLTGLTHLDLFG------ARITDSGAAYL 392
+ GLA L ++ L L + +TD+G +L
Sbjct: 752 SVRGPGLANLKGMSRLKSLSFVAVAQYKPSPLTDAGLVHL 791
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 73/147 (49%), Gaps = 7/147 (4%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
S ++D + L L+ L + + D G+ L+G++ LT LS +T G+ A
Sbjct: 679 SGLSDKAVARLAPLKELKRLSLDHT-DLRDSGMAALKGMTTLTELSLDETK-VTDAGLSA 736
Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC-----NCITDSDMKPLSGLTN 181
G++ + +L L + GL NLKG+ +L+SL+ + +TD+ + L L
Sbjct: 737 LKGMVQMERLSLGNVSVRGPGLANLKGMSRLKSLSFVAVAQYKPSPLTDAGLVHLENLPA 796
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTL 208
L L + + VTD+G+A + ++ L L
Sbjct: 797 LDFLNLGETSVTDAGMAAARKIKPLIL 823
>gi|290989399|ref|XP_002677325.1| predicted protein [Naegleria gruberi]
gi|284090932|gb|EFC44581.1| predicted protein [Naegleria gruberi]
Length = 412
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 84/303 (27%), Positives = 144/303 (47%), Gaps = 36/303 (11%)
Query: 94 ISDGGLEHLRGL--SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL 151
+SD ++H G S++ L F + MK ++ + NL L +++C V L
Sbjct: 64 VSDK-IDHKWGFTGSSIKKLKFSHLTIKSTDFMKIYSNMKNLKSLSMKKCRIEKKDFVYL 122
Query: 152 KGLMKLESLNI--KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL 209
+ +LESLNI + N + K + LTNLK D GI+
Sbjct: 123 MKIKQLESLNIIPHFSNITNEEICKICTNLTNLK----------DFGIS----------- 161
Query: 210 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
G + L ++ + SL L+++ +L ++ ++ K+ L LN+G N L
Sbjct: 162 ---GMSLQYKTLQYITNMKSLTSLDISNTELYEEYLQEIGKMTHLTSLNIGDNGTIP--L 216
Query: 270 VHLKGLTNLESLNLDSCGI--GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL-SGLTNL 326
++K L L+SLN++ I G L L L +L L +S + + GL++L +L
Sbjct: 217 QYIKSLAGLKSLNINGRFINNGFYELRELKDLHSLTELSVSHNTIKTKGLKYLIDTFPDL 276
Query: 327 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
S+++S+ G+ GS++K+ L L L++ I+D L +T L LT L++ +ITD
Sbjct: 277 TSLDISYNGL--GSIKKIRKLKHLTKLDISNNSISDQDLIYITCLPQLTKLNISSNQITD 334
Query: 387 SGA 389
+GA
Sbjct: 335 NGA 337
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 65/244 (26%), Positives = 119/244 (48%), Gaps = 24/244 (9%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
+SG + L ++ + +L SLD + ++ + L+ + +++LTSL+ N I Q
Sbjct: 160 ISGMSLQYKTLQYITNMKSLTSLDIS-NTELYEEYLQEIGKMTHLTSLNIGDNGTIPLQY 218
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVN--------LKGLMKLESLNIKWCNCITDSDMKP 175
+K+ AGL +L I+G +N LK L L L++ N I +K
Sbjct: 219 IKSLAGLKSL---------NINGRFINNGFYELRELKDLHSLTELSVS-HNTIKTKGLKY 268
Query: 176 L-SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
L +L SL IS + + I ++ L+ LT L++ ++ L ++ L L LN
Sbjct: 269 LIDTFPDLTSLDISYNGL--GSIKKIRKLKHLTKLDISNNSISDQDLIYITCLPQLTKLN 326
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
++ Q++D+G F+ + SL+ +++ FN+IT++ + +G+ NLE L S +
Sbjct: 327 ISSNQITDNGALLFASMESLRNIDVRFNDITNDKV--FQGMINLEKLKFKSFSLEPSSRK 384
Query: 295 NLTG 298
N G
Sbjct: 385 NKDG 388
>gi|22347544|gb|AAM95917.1| internalin A precursor [Listeria monocytogenes]
Length = 741
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 117/358 (32%), Positives = 171/358 (47%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 42 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 95
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 96 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 147
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 148 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 200
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 201 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 254
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 255 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 312
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 313 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVKY 368
>gi|72385461|ref|XP_846398.1| leucine-rich repeat protein (LRRP) [Trypanosoma brucei TREU927]
gi|25956236|emb|CAB95328.2| leucine-rich repeat protein (LRRP), putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
Length = 1448
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 102/344 (29%), Positives = 155/344 (45%), Gaps = 40/344 (11%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC 91
AL +L L G+N W + Q L LS + +TD + H +C NL +LD +FC
Sbjct: 610 ALNELNLSNCFGINAGWEALEKLQ--QLHVAILSNTHITDRDISHFSNCKNLITLDLSFC 667
Query: 92 IQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL 151
++ D + LSN+T+L +L+L+ C+ I GL L
Sbjct: 668 NKLLD-----VTALSNITTLE----------------------ELNLDSCSNIRKGLSVL 700
Query: 152 KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLN 210
L +L LNIK + DS + L + L + +C D +A L L L LN
Sbjct: 701 GELPRLCVLNIKGVQ-LEDSVIVSLGNGNSFVRLSLENCKGFGD--VAPLSNLVTLEELN 757
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV-LNLG-FNEITDEC 268
L C + + +L L L L+L R Q+ D+ E S V LNL +IT
Sbjct: 758 LHYCDKVTSGMGTLGRLPQLRVLDLGRTQVDDNSLENICTCSSPLVSLNLSNCKKITS-- 815
Query: 269 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 328
+ + LT LE LN+D+C G L L+ LS+T+ +RH+S +L +
Sbjct: 816 ISAIASLTALEELNIDNCCNVTSGWNVFGTLHQLRVATLSNTRTNDENVRHVSECKSLNT 875
Query: 329 INLSF-TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 371
+NL+F I+D + L+ ++ L+ LNLD G+ L +L
Sbjct: 876 LNLAFCKDITD--VTALSKITMLEELNLDCCHNIRKGIETLGTL 917
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 93/372 (25%), Positives = 149/372 (40%), Gaps = 69/372 (18%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISD-------------------GGLEHLRG 104
LS + +T + L C L L F C ++SD GL+ L
Sbjct: 1069 LSDTKITAKDIACLSSCKKLVKLKFFQCEKLSDVTVVYKIQSLEELIVTSCSDGLKGLNA 1128
Query: 105 LSNLTSLSFR--RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
L L L F RN + +++ +LV+L +E + + L + LE L++
Sbjct: 1129 LGTLPRLRFHHLRNVRGSDISVESIGTSKSLVRLHIEVGEEL-TDITPLSNITSLEELSL 1187
Query: 163 KWCNCITDSDMKP-----LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
+ D P L L LKSL + S+++DS + + + +T LNL+
Sbjct: 1188 R------DYRKPPEGVGTLGKLPRLKSLDLGLSRISDSTLYCICLSRSITSLNLDS-SWK 1240
Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE---------- 267
+ +S L +L LNL C G E S++ L+VLNL F T
Sbjct: 1241 LTDISHISNLTALEELNLGGCYYITSGWEALSELPRLRVLNLEFTRATTRDGGYYISRCK 1300
Query: 268 ----------------CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 311
CL ++K LE L++ C +G L L L+ L L +
Sbjct: 1301 YLVTLNLELCDMTDASCLANIK---TLEELHIGGCDELTQGFSALFTLPQLRILNLICSL 1357
Query: 312 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL----DARQITDTGLAA 367
+ LR + +E +NLS+ + + L + S+K L+L D R+ T+ G +
Sbjct: 1358 ITDEDLREIQPPHTIEELNLSYC-VELNDITPLGRIKSIKKLHLRQRHDVRRPTE-GFRS 1415
Query: 368 LTSLTGLTHLDL 379
L L L+ +DL
Sbjct: 1416 LLELPCLSWVDL 1427
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 96/392 (24%), Positives = 150/392 (38%), Gaps = 98/392 (25%)
Query: 65 SGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM 124
SG V D+ L L DC +L+ L+ ++ IQ++D + LSN T++
Sbjct: 357 SGVPVEDNCLKDLCDCGSLERLNISYRIQLTD-----INPLSNATAIE------------ 399
Query: 125 KAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC------------------- 165
+L+L C RI G+ + L KL L++K
Sbjct: 400 ----------ELNLNGCRRITRGIGVVWALPKLRVLHMKDVHLSEPSLDSVGTGGPLVKV 449
Query: 166 ---NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
NC DM LS + L+ L I SG+ L L L +LN++ +++
Sbjct: 450 SLDNCAGFGDMTLLSSIVTLEELNIQKCADIISGVGCLGTLPYLRVLNIKEAHISSLDFT 509
Query: 223 SLSALGSLFYLN-----------------------LNRCQLSDDGCEKFSKIGSLKVLNL 259
+ A SL LN L+ C D G + LK+L+L
Sbjct: 510 GIGASKSLLQLNMESITGLSNVEALANILTLEKLSLHGCTGIDAGIGCLGNLPQLKMLDL 569
Query: 260 GFNEITDECL-----------------------VHLKGLTNLESLNLDSCGIGDEGLVNL 296
+E L H+ L L LNL +C + G L
Sbjct: 570 SGTNTDNESLRSLCLSQTVVSLNLSHCWKMTNVSHISSLEALNELNLSNCFGINAGWEAL 629
Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNL 355
L L LS+T + + H S NL +++LSF + D + L+ +++L+ LNL
Sbjct: 630 EKLQQLHVAILSNTHITDRDISHFSNCKNLITLDLSFCNKLLD--VTALSNITTLEELNL 687
Query: 356 DARQITDTGLAALTSLTGLTHLDLFGARITDS 387
D+ GL+ L L L L++ G ++ DS
Sbjct: 688 DSCSNIRKGLSVLGELPRLCVLNIKGVQLEDS 719
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 91/342 (26%), Positives = 144/342 (42%), Gaps = 57/342 (16%)
Query: 100 EHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 159
HL + L L+ +T ++ + L NL L+L + + KL
Sbjct: 250 RHLFNIGTLEELAITDTMQLT--NIRGISRLTNLKCLELNSTNIDDSCVEEISACAKLSK 307
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
L I CN ITD+ P+S L L+ L +S +T GI L L +L +L+L G PV
Sbjct: 308 LCISKCNNITDA--TPISQLAALEELNLSNCHIT-KGIGTLGMLLRLRMLDLSGVPVEDN 364
Query: 220 CLDSLSALGSLFYLNLN-RCQLSD---------------DGCEKFSK-------IGSLKV 256
CL L GSL LN++ R QL+D +GC + ++ + L+V
Sbjct: 365 CLKDLCDCGSLERLNISYRIQLTDINPLSNATAIEELNLNGCRRITRGIGVVWALPKLRV 424
Query: 257 LNLGFNEIT------------------DEC-----LVHLKGLTNLESLNLDSCGIGDEGL 293
L++ ++ D C + L + LE LN+ C G+
Sbjct: 425 LHMKDVHLSEPSLDSVGTGGPLVKVSLDNCAGFGDMTLLSSIVTLEELNIQKCADIISGV 484
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLKS 352
L L L+ L + + + S + +L +N+ S TG+S+ + LA + +L+
Sbjct: 485 GCLGTLPYLRVLNIKEAHISSLDFTGIGASKSLLQLNMESITGLSN--VEALANILTLEK 542
Query: 353 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRS 394
L+L D G+ L +L L LDL G T++ LRS
Sbjct: 543 LSLHGCTGIDAGIGCLGNLPQLKMLDLSG---TNTDNESLRS 581
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 111/428 (25%), Positives = 174/428 (40%), Gaps = 109/428 (25%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISD-------GGLEHL---------RGLSN 107
LS + D + H+ +C +L +L+ FC I+D LE L +G+
Sbjct: 854 LSNTRTNDENVRHVSECKSLNTLNLAFCKDITDVTALSKITMLEELNLDCCHNIRKGIET 913
Query: 108 LTSLSFRRNNAIT--------AQGMKAFAGLINLVKLDLERCT-RI-------------- 144
L +L R ++ AQ +LVKL+LER RI
Sbjct: 914 LGTLPKARILSMKECYMGDGYAQQCSILGNSKSLVKLNLERSRGRISVKALSNVATLEEL 973
Query: 145 ---HGGLV----NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSG 196
H V + L +L LN+K+ + I K +S +L+SL +S C VTD
Sbjct: 974 VLDHARKVCCIPSFSCLPRLRVLNLKYTD-INGDVTKNISESKSLRSLNLSHCKWVTDIS 1032
Query: 197 IAY-------------------LKGLQKLTLLN---LEGCPVTAACLDSLSALGSLFYLN 234
+ + L KL LL L +TA + LS+ L L
Sbjct: 1033 VLSSLLTLEELNVNCCNGIRKGWESLGKLPLLRVAILSDTKITAKDIACLSSCKKLVKLK 1092
Query: 235 LNRCQ-LSD-------------------DGCEKFSKIGSLKVL------NLGFNEITDEC 268
+C+ LSD DG + + +G+L L N+ ++I+ E
Sbjct: 1093 FFQCEKLSDVTVVYKIQSLEELIVTSCSDGLKGLNALGTLPRLRFHHLRNVRGSDISVES 1152
Query: 269 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE---LSDTQVGSSGLRHLSGLTN 325
+ K L L +G+E L ++T L N+ LE L D + G+ L L
Sbjct: 1153 IGTSKSLVRLH------IEVGEE-LTDITPLSNITSLEELSLRDYRKPPEGVGTLGKLPR 1205
Query: 326 LESINLSFTGISDGSLRKLAGLSSLKSLNLDAR-QITDTGLAALTSLTGLTHLDLFGARI 384
L+S++L + ISD +L + S+ SLNLD+ ++TD ++ +++LT L L+L G
Sbjct: 1206 LKSLDLGLSRISDSTLYCICLSRSITSLNLDSSWKLTD--ISHISNLTALEELNLGGCYY 1263
Query: 385 TDSGAAYL 392
SG L
Sbjct: 1264 ITSGWEAL 1271
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 63/202 (31%), Positives = 96/202 (47%), Gaps = 13/202 (6%)
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS-GIAYLKGLQKLTL 208
++ L LE LN+ C IT S + LS L L+ L + ++ T G Y+ + L
Sbjct: 1246 HISNLTALEELNLGGCYYIT-SGWEALSELPRLRVLNLEFTRATTRDGGYYISRCKYLVT 1304
Query: 209 LNLEGCPVT-AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 267
LNLE C +T A+CL ++ L L ++ C G + L++LNL + ITDE
Sbjct: 1305 LNLELCDMTDASCLANIKTLEEL---HIGGCDELTQGFSALFTLPQLRILNLICSLITDE 1361
Query: 268 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL---SDTQVGSSGLRHLSGLT 324
L ++ +E LNL C + + L + ++K L L D + + G R L L
Sbjct: 1362 DLREIQPPHTIEELNLSYC-VELNDITPLGRIKSIKKLHLRQRHDVRRPTEGFRSLLELP 1420
Query: 325 NLESINL-SFTGISDGS--LRK 343
L ++L + G SD S LRK
Sbjct: 1421 CLSWVDLDNVYGWSDVSCELRK 1442
>gi|290993787|ref|XP_002679514.1| predicted protein [Naegleria gruberi]
gi|284093131|gb|EFC46770.1| predicted protein [Naegleria gruberi]
Length = 282
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 77/239 (32%), Positives = 117/239 (48%), Gaps = 3/239 (1%)
Query: 155 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 214
+KLESL + C +T L +T+LK L +S + + D YL L L L+L
Sbjct: 25 LKLESLGLCRC-ALTSKSTSFLCKITSLKKLDLSENIINDECGFYLSMLTDLEELDLHDN 83
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF-SKIGSLKVLNLGFNEITDECLVHLK 273
+ C S+L L L L + ++S + + S+ SLK LNL N I +HL
Sbjct: 84 SIEGKCFKEFSSLKKLKTLKLCQNRISQEEAMIYLSQTVSLKSLNLSQNNIGQSS-IHLS 142
Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333
LTNL+ L L+ C I GL + L L+ L++S +G LS L L +++
Sbjct: 143 NLTNLKELELNLCKITKGGLSFFSNLKKLEILKISQNSLGYDDFEELSHLVRLRILSIFG 202
Query: 334 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
G+ S + + +L++L + + I D GLA+L+ L L L L RITD+G +L
Sbjct: 203 CGLEKNSTNFIGNIKTLRNLEMFSNNIYDAGLASLSGLVNLQILKLDSTRITDTGIQHL 261
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 88/171 (51%), Gaps = 2/171 (1%)
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
++ L + L+SLN+ N I S + LS LTNLK L+++ K+T G+++ L+KL
Sbjct: 114 AMIYLSQTVSLKSLNLSQNN-IGQSSI-HLSNLTNLKELELNLCKITKGGLSFFSNLKKL 171
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 266
+L + + + LS L L L++ C L + I +L+ L + N I D
Sbjct: 172 EILKISQNSLGYDDFEELSHLVRLRILSIFGCGLEKNSTNFIGNIKTLRNLEMFSNNIYD 231
Query: 267 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 317
L L GL NL+ L LDS I D G+ +L+ + L+ L L+ +G+ L
Sbjct: 232 AGLASLSGLVNLQILKLDSTRITDTGIQHLSQMKELEILRLNSNSLGNETL 282
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 90/172 (52%), Gaps = 7/172 (4%)
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
M LS +LKSL +S + + S I +L L L L L C +T L S L L
Sbjct: 115 MIYLSQTVSLKSLNLSQNNIGQSSI-HLSNLTNLKELELNLCKITKGGLSFFSNLKKLEI 173
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNL---GFNEITDECLVHLKGLTNLESLNLDSCGIG 289
L +++ L D E+ S + L++L++ G + + + ++K L NLE S I
Sbjct: 174 LKISQNSLGYDDFEELSHLVRLRILSIFGCGLEKNSTNFIGNIKTLRNLEMF---SNNIY 230
Query: 290 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 341
D GL +L+GL NL+ L+L T++ +G++HLS + LE + L+ + + +L
Sbjct: 231 DAGLASLSGLVNLQILKLDSTRITDTGIQHLSQMKELEILRLNSNSLGNETL 282
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 77/274 (28%), Positives = 129/274 (47%), Gaps = 7/274 (2%)
Query: 94 ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL-ERCTRIHGGLVNLK 152
I D G+E + L L SL R A+T++ + +L KLDL E G L
Sbjct: 14 IEDEGVEFISDLK-LESLGLCRC-ALTSKSTSFLCKITSLKKLDLSENIINDECGFY-LS 70
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT-DSGIAYLKGLQKLTLLNL 211
L LE L++ N I K S L LK+L++ ++++ + + YL L LNL
Sbjct: 71 MLTDLEELDLHD-NSIEGKCFKEFSSLKKLKTLKLCQNRISQEEAMIYLSQTVSLKSLNL 129
Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 271
+ + + LS L +L L LN C+++ G FS + L++L + N + +
Sbjct: 130 SQNNIGQSSIH-LSNLTNLKELELNLCKITKGGLSFFSNLKKLEILKISQNSLGYDDFEE 188
Query: 272 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 331
L L L L++ CG+ + + L+ LE+ + +GL LSGL NL+ + L
Sbjct: 189 LSHLVRLRILSIFGCGLEKNSTNFIGNIKTLRNLEMFSNNIYDAGLASLSGLVNLQILKL 248
Query: 332 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 365
T I+D ++ L+ + L+ L L++ + + L
Sbjct: 249 DSTRITDTGIQHLSQMKELEILRLNSNSLGNETL 282
>gi|291001373|ref|XP_002683253.1| hypothetical protein NAEGRDRAFT_45222 [Naegleria gruberi]
gi|284096882|gb|EFC50509.1| hypothetical protein NAEGRDRAFT_45222 [Naegleria gruberi]
Length = 461
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 86/319 (26%), Positives = 162/319 (50%), Gaps = 19/319 (5%)
Query: 67 SDVTDSGLIH---LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
D+ +G+I + +NLQ L+ N C +I + G++ + L NL LS N + A+G
Sbjct: 144 KDIPKAGIIFCQAISQLTNLQKLNVNNC-KIGNLGVQFITQLGNLMELSVI-NTGMDAKG 201
Query: 124 MKAFAG-LINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNL 182
+ A L NL KL + L N+K +L SL++ + + K +S + NL
Sbjct: 202 LNLIATRLKNLTKLQFNGTVQHVTSLSNMK---QLTSLSMGFDVDVDVKGAKAISEMNNL 258
Query: 183 KSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-LS 241
+L ++ + D G+ + + +LT L + G +T L L L L LNLN +
Sbjct: 259 TNLSLNTN---DEGLEEICKMTQLTSLKVCGFYLTTLGLKFLPRLKKLRKLNLNDHEDFG 315
Query: 242 DDGCE---KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
++G + + ++ SL++ ++G ++ + + +LK LT SL + + I +EG+ LT
Sbjct: 316 NEGAKLISELDQLTSLEINDIGIDKKGAKFITNLKQLT---SLTISNNPIFNEGVKYLTE 372
Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
L L L T++ + G+++LS + NL+ +N+ + D + + G+ +L L+++
Sbjct: 373 LPQLTNLNARFTKIDNEGVKYLSEMANLKILNIKRNYVQDLGVESICGMKNLTELDIEQN 432
Query: 359 QITDTGLAALTSLTGLTHL 377
+I++ G+A L + L L
Sbjct: 433 EISEEGVAKLKEMKQLKVL 451
Score = 77.8 bits (190), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 68/273 (24%), Positives = 130/273 (47%), Gaps = 7/273 (2%)
Query: 43 GVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
G++ K +++IA++ +L + +G T + L + L SL F + + G + +
Sbjct: 196 GMDAKGLNLIATRLKNLTKLQFNG---TVQHVTSLSNMKQLTSLSMGFDVDVDVKGAKAI 252
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
++NLT+LS N+ +G++ + L L + GL L L KL LN+
Sbjct: 253 SEMNNLTNLSLNTND----EGLEEICKMTQLTSLKVCGFYLTTLGLKFLPRLKKLRKLNL 308
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
+ K +S L L SL+I+ + G ++ L++LT L + P+ +
Sbjct: 309 NDHEDFGNEGAKLISELDQLTSLEINDIGIDKKGAKFITNLKQLTSLTISNNPIFNEGVK 368
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282
L+ L L LN ++ ++G + S++ +LK+LN+ N + D + + G+ NL L+
Sbjct: 369 YLTELPQLTNLNARFTKIDNEGVKYLSEMANLKILNIKRNYVQDLGVESICGMKNLTELD 428
Query: 283 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 315
++ I +EG+ L + LK L+ +D +
Sbjct: 429 IEQNEISEEGVAKLKEMKQLKVLKKADQRASKE 461
>gi|322790910|gb|EFZ15576.1| hypothetical protein SINV_11426 [Solenopsis invicta]
Length = 526
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 96/316 (30%), Positives = 156/316 (49%), Gaps = 68/316 (21%)
Query: 57 SSLLSVDLSG-SDVTDSGLIHL--KDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLS 112
+L +++LSG ++TD G+ + ++ +L L+ + C Q++D L + + L NL L
Sbjct: 233 PNLEALNLSGCYNITDIGITNAFCQEYPSLTELNLSLCKQVTDTSLSRIAQYLKNLEHLE 292
Query: 113 FRRNNAITAQGMKAFA-GLINLVKLDLERCTRIHG-GLVNLKGL--------MKLESLNI 162
IT G+ A GL L +LDL C + G+ +L GL + LE L++
Sbjct: 293 LGGCCNITNTGLLLIAWGLKKLKRLDLRSCWHVSDIGIAHLAGLNRETADGNLALEHLSL 352
Query: 163 KWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 220
+ C ++D ++ +S G T LKS+ +S C +TDSG+ +L + L LNL C
Sbjct: 353 QDCQRLSDEALRHVSLGFTTLKSINLSFCVCITDSGVKHLARMSSLRELNLRSC------ 406
Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHL-KGLTNL 278
D++S +G + L++ G S+I SL V F ++I D+ LVH+ +GL NL
Sbjct: 407 -DNISDIGMAY--------LAEGG----SRITSLDV---SFCDKIGDQALVHISQGLFNL 450
Query: 279 ESLNLDSCGIGDEGLVNLT-----------GLC----------------NLKCLELSD-T 310
+SL+L +C I DEG+ + G C NLKC++L T
Sbjct: 451 KSLSLSACQISDEGICKIAKTLHDLETLNIGQCSRLTDRGLHTVAESMKNLKCIDLYGCT 510
Query: 311 QVGSSGLRHLSGLTNL 326
++ +SGL + L L
Sbjct: 511 KITTSGLERIMKLPQL 526
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 94/309 (30%), Positives = 149/309 (48%), Gaps = 52/309 (16%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNL--KGLMKLES 159
RG+ + LS RR + G+ NL L+L C I G+ N + L
Sbjct: 211 RGVKKVQVLSLRRGLS------DVLKGVPNLEALNLSGCYNITDIGITNAFCQEYPSLTE 264
Query: 160 LNIKWCNCITDSDMKPLSG-LTNLKSLQIS-CSKVTDSGIAYLK-GLQKLTLLNLEGCPV 216
LN+ C +TD+ + ++ L NL+ L++ C +T++G+ + GL+KL L+L C
Sbjct: 265 LNLSLCKQVTDTSLSRIAQYLKNLEHLELGGCCNITNTGLLLIAWGLKKLKRLDLRSCWH 324
Query: 217 TA-------ACLDSLSALG--SLFYLNLNRCQ-LSDDGCEKFS-KIGSLKVLNLGFNE-I 264
+ A L+ +A G +L +L+L CQ LSD+ S +LK +NL F I
Sbjct: 325 VSDIGIAHLAGLNRETADGNLALEHLSLQDCQRLSDEALRHVSLGFTTLKSINLSFCVCI 384
Query: 265 TDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 323
TD + HL +++L LNL SC I D G+ L G
Sbjct: 385 TDSGVKHLARMSSLRELNLRSCDNISDIGMAYLA-----------------------EGG 421
Query: 324 TNLESINLSF-TGISDGSLRKLA-GLSSLKSLNLDARQITDTGLAALT-SLTGLTHLDLF 380
+ + S+++SF I D +L ++ GL +LKSL+L A QI+D G+ + +L L L++
Sbjct: 422 SRITSLDVSFCDKIGDQALVHISQGLFNLKSLSLSACQISDEGICKIAKTLHDLETLNIG 481
Query: 381 G-ARITDSG 388
+R+TD G
Sbjct: 482 QCSRLTDRG 490
>gi|290981696|ref|XP_002673566.1| LRR_RI domain-containing protein [Naegleria gruberi]
gi|284087150|gb|EFC40822.1| LRR_RI domain-containing protein [Naegleria gruberi]
Length = 411
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 76/322 (23%), Positives = 143/322 (44%), Gaps = 28/322 (8%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN-N 117
L +D+ +++ + ++ L++LD + I G +++ LS LT L+ N
Sbjct: 117 LTDLDVQYNNLGTDEVKYISQLKQLRNLDISIN-NIDKEGAKYISQLSQLTKLNISGNCY 175
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
I +G K + + L LD+ + G ++ L +L SL I N I D K +S
Sbjct: 176 CIGTEGAKHISSMKQLTYLDISKNEIGDEGAKSISELKQLTSLYI-LTNNIGDEGAKHIS 234
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
G+ L L IS + + G+ ++ +++LT L++ + L A+ L LN+
Sbjct: 235 GMNQLTELDISFNLIGIEGVRHISSMKQLTSLSINNAKIGDGA-KYLGAMSQLTNLNIFS 293
Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
C + +G ++ S + LK L +G+N+ +G EG N++
Sbjct: 294 CNIESNGAKQISALQQLKFLGIGYNQ------------------------LGHEGAKNIS 329
Query: 298 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 357
+ L L + +G G +H+SG+ L ++N+ I D + ++ SL L++ +
Sbjct: 330 EMKQLDSLYICGNDIGERGAKHISGMKRLTTLNICENNIGDNGAKFISQSKSLTILSIYS 389
Query: 358 RQITDTGLAALTSLTGLTHLDL 379
I+ G L + L LD+
Sbjct: 390 NDISQVGEKFLQRMKQLERLDI 411
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 80/333 (24%), Positives = 147/333 (44%), Gaps = 55/333 (16%)
Query: 111 LSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD 170
LS + NN +G F I +K+D E T + + L+ + +L L++++ N TD
Sbjct: 74 LSLKCNNDDKLKGQ--FLQNIETLKVDRESLTIMFDCKI-LEFMKQLTDLDVQYNNLGTD 130
Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG---CPVTAACLDSLSAL 227
++K +S L L++L IS + + G Y+ L +LT LN+ G C T +S++
Sbjct: 131 -EVKYISQLKQLRNLDISINNIDKEGAKYISQLSQLTKLNISGNCYCIGTEGA-KHISSM 188
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL------------ 275
L YL++++ ++ D+G + S++ L L + N I DE H+ G+
Sbjct: 189 KQLTYLDISKNEIGDEGAKSISELKQLTSLYILTNNIGDEGAKHISGMNQLTELDISFNL 248
Query: 276 -----------------------------------TNLESLNLDSCGIGDEGLVNLTGLC 300
+ L +LN+ SC I G ++ L
Sbjct: 249 IGIEGVRHISSMKQLTSLSINNAKIGDGAKYLGAMSQLTNLNIFSCNIESNGAKQISALQ 308
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
LK L + Q+G G +++S + L+S+ + I + + ++G+ L +LN+ I
Sbjct: 309 QLKFLGIGYNQLGHEGAKNISEMKQLDSLYICGNDIGERGAKHISGMKRLTTLNICENNI 368
Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
D G ++ LT L ++ I+ G +L+
Sbjct: 369 GDNGAKFISQSKSLTILSIYSNDISQVGEKFLQ 401
Score = 44.7 bits (104), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 70/152 (46%), Gaps = 2/152 (1%)
Query: 245 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 304
C+ + L L++ +N + + + ++ L L +L++ I EG ++ L L
Sbjct: 108 CKILEFMKQLTDLDVQYNNLGTDEVKYISQLKQLRNLDISINNIDKEGAKYISQLSQLTK 167
Query: 305 LELSDTQ--VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L +S +G+ G +H+S + L +++S I D + ++ L L SL + I D
Sbjct: 168 LNISGNCYCIGTEGAKHISSMKQLTYLDISKNEIGDEGAKSISELKQLTSLYILTNNIGD 227
Query: 363 TGLAALTSLTGLTHLDLFGARITDSGAAYLRS 394
G ++ + LT LD+ I G ++ S
Sbjct: 228 EGAKHISGMNQLTELDISFNLIGIEGVRHISS 259
>gi|219821273|gb|ACL37760.1| internalin A [Listeria monocytogenes]
Length = 739
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 107/329 (32%), Positives = 166/329 (50%), Gaps = 39/329 (11%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDIVMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQL--SFGNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 252
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
L GL L LEL++ Q+ + +S L NL + L F ISD + ++ L+ L+ L
Sbjct: 253 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRL 308
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGA 382
+++D ++SL LT+++ A
Sbjct: 309 FFYNNKVSD-----VSSLANLTNINWLSA 332
>gi|85679218|gb|ABC72025.1| InlA [Listeria monocytogenes]
gi|85679232|gb|ABC72032.1| InlA [Listeria monocytogenes]
Length = 794
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 117/358 (32%), Positives = 171/358 (47%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 97 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 150
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 151 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 202
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 203 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 255
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 256 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 309
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 310 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 367
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 368 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNY 423
>gi|385800049|ref|YP_005836453.1| hypothetical protein [Halanaerobium praevalens DSM 2228]
gi|309389413|gb|ADO77293.1| conserved repeat domain protein [Halanaerobium praevalens DSM 2228]
Length = 2607
Score = 81.3 bits (199), Expect = 8e-13, Method: Composition-based stats.
Identities = 110/333 (33%), Positives = 155/333 (46%), Gaps = 47/333 (14%)
Query: 32 ALQDLCLGQYPGVNDK----WMDVIASQGSSLLSVDLS-GSDVTDSGLIHLKDCSNLQSL 86
A +D YPG+NDK + VI S+L L G D G I L + NL +L
Sbjct: 1017 AFKDQSGNAYPGMNDKTSWNFKTVINIPDSNLKQQILDRGIDNNGDGEISLSESVNLYTL 1076
Query: 87 DFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG 146
+F +ISD L GL + TSL KL L +I
Sbjct: 1077 K-SFYTEISD-----LSGLEHFTSLD----------------------KLALYGGKKI-S 1107
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
L L+ L L SL + N I + D L+ LTNL L +S +K++D I+ L L KL
Sbjct: 1108 DLSPLQNLTNLNSLTLTE-NVINNIDY--LANLTNLTRLDLSSNKISD--ISVLANLTKL 1162
Query: 207 TLLNLEGCPVT-AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265
T L L +T + L L L L +L+L ++S+ + S + L L+LG +
Sbjct: 1163 TELVLGSNIITDESDLSVLENLTELEHLSLEENEISN--IDSLSNLSKLNYLHLGSTNVE 1220
Query: 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 325
D + LK LT L LNL+S I DE L L+ +L L L + S + ++ LTN
Sbjct: 1221 D--ISSLKNLTALNFLNLNSTYINDEDLTILSNFKSLTELYLQSSNDKISDISVVADLTN 1278
Query: 326 LESINLSFTGISDGSLRKLAGLSSLKSL-NLDA 357
L+ + L + ISD +R L+ L+ L SL NL+A
Sbjct: 1279 LKYLYLGYNEISD--IRALSDLTKLTSLYNLNA 1309
Score = 61.6 bits (148), Expect = 6e-07, Method: Composition-based stats.
Identities = 71/220 (32%), Positives = 103/220 (46%), Gaps = 16/220 (7%)
Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
SD+ L T+L L + K I+ L LQ LT NL +T ++++ L +L
Sbjct: 1084 SDLSGLEHFTSLDKLALYGGK----KISDLSPLQNLT--NLNSLTLTENVINNIDYLANL 1137
Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLN---LGFNEITDEC-LVHLKGLTNLESLNLDSC 286
NL R LS + S + +L L LG N ITDE L L+ LT LE L+L+
Sbjct: 1138 --TNLTRLDLSSNKISDISVLANLTKLTELVLGSNIITDESDLSVLENLTELEHLSLEEN 1195
Query: 287 GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG 346
I + + +L+ L L L L T V + L LT L +NL+ T I+D L L+
Sbjct: 1196 EISN--IDSLSNLSKLNYLHLGSTNV--EDISSLKNLTALNFLNLNSTYINDEDLTILSN 1251
Query: 347 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
SL L L + + ++ + LT L +L L I+D
Sbjct: 1252 FKSLTELYLQSSNDKISDISVVADLTNLKYLYLGYNEISD 1291
>gi|219821267|gb|ACL37756.1| internalin A [Listeria monocytogenes]
Length = 739
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 117/358 (32%), Positives = 171/358 (47%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 252
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 253 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 310
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 311 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVKY 366
>gi|85679224|gb|ABC72028.1| InlA [Listeria monocytogenes]
Length = 794
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 117/358 (32%), Positives = 171/358 (47%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 97 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 150
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 151 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 202
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 203 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 255
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 256 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 309
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 310 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 367
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 368 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVKY 423
>gi|219821288|gb|ACL37770.1| internalin A [Listeria monocytogenes]
Length = 739
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 117/358 (32%), Positives = 171/358 (47%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 252
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 253 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 310
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 311 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVKY 366
>gi|219821300|gb|ACL37778.1| internalin A [Listeria monocytogenes]
gi|219821378|gb|ACL37830.1| internalin A [Listeria monocytogenes]
Length = 739
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 117/358 (32%), Positives = 171/358 (47%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQL--SFGNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 252
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 253 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 310
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 311 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNY 366
>gi|290989200|ref|XP_002677229.1| predicted protein [Naegleria gruberi]
gi|284090835|gb|EFC44485.1| predicted protein [Naegleria gruberi]
Length = 308
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 107/217 (49%)
Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
D K + L +L IS + + Y+ L KL LN+ G +T LS L L
Sbjct: 57 DCKIFEWMKQLTNLSISYNNMNVENTKYIGQLDKLINLNINGNAITHEGAKYLSELEQLN 116
Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
L+++ C++ +G + S++ L LN+G N I E + H+ GL+ L L++ + IG+E
Sbjct: 117 TLHIDNCEIGVEGAKYLSEMKHLTNLNIGSNRIGVEGVKHIIGLSKLTFLDISNNKIGEE 176
Query: 292 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 351
G L + L L++S + G+ ++S + L S++++ I + ++ ++ L
Sbjct: 177 GAKYLREMRQLNNLDVSTNALRQQGIEYISEMKQLTSLSIAVNLIGVEGAKHISEMTQLT 236
Query: 352 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 388
LN++ I G+ + ++ L HL + G I + G
Sbjct: 237 KLNMNCCNIGVEGVKHIINMKQLKHLIISGNNIGNKG 273
Score = 44.3 bits (103), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 48/213 (22%), Positives = 91/213 (42%), Gaps = 25/213 (11%)
Query: 55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI---------------------- 92
Q L++++++G+ +T G +L + L +L + C
Sbjct: 87 QLDKLINLNINGNAITHEGAKYLSELEQLNTLHIDNCEIGVEGAKYLSEMKHLTNLNIGS 146
Query: 93 -QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL 151
+I G++H+ GLS LT L NN I +G K + L LD+ G+ +
Sbjct: 147 NRIGVEGVKHIIGLSKLTFLDI-SNNKIGEEGAKYLREMRQLNNLDVSTNALRQQGIEYI 205
Query: 152 KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
+ +L SL+I N I K +S +T L L ++C + G+ ++ +++L L +
Sbjct: 206 SEMKQLTSLSIA-VNLIGVEGAKHISEMTQLTKLNMNCCNIGVEGVKHIINMKQLKHLII 264
Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 244
G + + + L L +LN+ + +G
Sbjct: 265 SGNNIGNKGCELILDLEQLTFLNIENNNIDVEG 297
>gi|219821330|gb|ACL37798.1| internalin A [Listeria monocytogenes]
gi|219821348|gb|ACL37810.1| internalin A [Listeria monocytogenes]
Length = 739
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 108/333 (32%), Positives = 169/333 (50%), Gaps = 36/333 (10%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 252
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
L GL L LEL++ Q+ + +S L NL + L F ISD + ++ L+ L+ L
Sbjct: 253 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRL 308
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
+++D +++L +LT + L +I+D
Sbjct: 309 FFYNNKVSD--VSSLANLTNINWLSAAHNQISD 339
>gi|112959522|gb|ABI27288.1| truncated internalin A [Listeria monocytogenes]
Length = 538
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 116/358 (32%), Positives = 171/358 (47%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 31 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 84
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 85 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQL--SFGNQVTD--LKPL 136
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 137 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 189
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 190 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 243
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 244 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 301
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 302 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNY 357
>gi|428303964|ref|YP_007140789.1| hypothetical protein Cri9333_0293 [Crinalium epipsammum PCC 9333]
gi|428245499|gb|AFZ11279.1| leucine-rich repeat-containing protein [Crinalium epipsammum PCC
9333]
Length = 409
Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 96/298 (32%), Positives = 150/298 (50%), Gaps = 33/298 (11%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
++ DS + L+ ++ LD N +I+ LE ++ L NLT L N +
Sbjct: 128 EIPDSKRLTLEVLQGIKVLDANNA-EIT--SLEGIQALRNLTILRLDGNKI---SDVTPL 181
Query: 128 AGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
AGL NL L L+ H + ++K L L +L++ + N SD+ PL+GL NL+ L++
Sbjct: 182 AGLTNLRNLRLD-----HSQISDVKPLTGLTNLSVLYLNKNQISDVTPLAGLINLRDLRL 236
Query: 188 SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF-YLNLNRCQLSD--DG 244
++++D + L G L+NL G + + +S + LF ++NL L+D D
Sbjct: 237 DQNQISD--VTPLAG-----LINLRGLGLDQ---NQISDVKPLFGFVNLTTLYLNDNSDV 286
Query: 245 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 304
FS + +L VL L N+I+D + L LTNL L LD I D + L L L
Sbjct: 287 TPLFS-LANLTVLTLYDNKISD--VKPLTALTNLTVLELDQNQISD--VKPLASLARLTR 341
Query: 305 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L+D Q+ S + L+GL L S+ LS ISD ++ L GL++L L L I++
Sbjct: 342 LSLNDNQI--SDVEPLAGLAKLTSLRLSQNQISD--VKPLTGLTNLSGLGLSDNPISN 395
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 88/272 (32%), Positives = 127/272 (46%), Gaps = 69/272 (25%)
Query: 145 HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQ 204
+ + +L+G+ L +L I + SD+ PL+GLTNL++L++ S+++D + L GL
Sbjct: 150 NAEITSLEGIQALRNLTILRLDGNKISDVTPLAGLTNLRNLRLDHSQISD--VKPLTGLT 207
Query: 205 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 264
L S+ YLN N Q+SD + + +L+ L L N+I
Sbjct: 208 NL----------------------SVLYLNKN--QISD--VTPLAGLINLRDLRLDQNQI 241
Query: 265 TDECLVHLKGLTNLESLNLDSCGIGDE----GLVNLT--------------GLCNLKCLE 306
+D + L GL NL L LD I D G VNLT L NL L
Sbjct: 242 SD--VTPLAGLINLRGLGLDQNQISDVKPLFGFVNLTTLYLNDNSDVTPLFSLANLTVLT 299
Query: 307 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT--- 363
L D ++ S ++ L+ LTNL + L ISD ++ LA L+ L L+L+ QI+D
Sbjct: 300 LYDNKI--SDVKPLTALTNLTVLELDQNQISD--VKPLASLARLTRLSLNDNQISDVEPL 355
Query: 364 -GLAALTS-------------LTGLTHLDLFG 381
GLA LTS LTGLT+L G
Sbjct: 356 AGLAKLTSLRLSQNQISDVKPLTGLTNLSGLG 387
>gi|219821309|gb|ACL37784.1| internalin A [Listeria monocytogenes]
gi|219821393|gb|ACL37840.1| internalin A [Listeria monocytogenes]
Length = 739
Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 117/358 (32%), Positives = 171/358 (47%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 252
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 253 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 310
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 311 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNY 366
>gi|112961640|gb|ABI28446.1| truncated internalin A [Listeria monocytogenes]
gi|112961643|gb|ABI28448.1| truncated internalin A [Listeria monocytogenes]
gi|112961661|gb|ABI28460.1| truncated internalin A [Listeria monocytogenes]
Length = 556
Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 116/358 (32%), Positives = 171/358 (47%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 49 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 102
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 103 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQL--SFGNQVTD--LKPL 154
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 155 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 207
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 208 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 261
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 262 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 319
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 320 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNY 375
>gi|167861924|gb|ACA05661.1| InlA [Listeria monocytogenes]
Length = 800
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 117/358 (32%), Positives = 171/358 (47%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLSDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNY 424
>gi|313485075|gb|ADR53008.1| InlA [Listeria monocytogenes]
Length = 800
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 117/358 (32%), Positives = 171/358 (47%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNY 424
>gi|112959440|gb|ABI27247.1| truncated internalin A [Listeria monocytogenes]
gi|112959442|gb|ABI27248.1| truncated internalin A [Listeria monocytogenes]
gi|112959448|gb|ABI27251.1| truncated internalin A [Listeria monocytogenes]
gi|112959454|gb|ABI27254.1| truncated internalin A [Listeria monocytogenes]
gi|112959458|gb|ABI27256.1| truncated internalin A [Listeria monocytogenes]
gi|112959460|gb|ABI27257.1| truncated internalin A [Listeria monocytogenes]
gi|112959462|gb|ABI27258.1| truncated internalin A [Listeria monocytogenes]
gi|112959472|gb|ABI27263.1| truncated internalin A [Listeria monocytogenes]
gi|112959480|gb|ABI27267.1| truncated internalin A [Listeria monocytogenes]
gi|112959482|gb|ABI27268.1| truncated internalin A [Listeria monocytogenes]
gi|112959488|gb|ABI27271.1| truncated internalin A [Listeria monocytogenes]
gi|112959514|gb|ABI27284.1| truncated internalin A [Listeria monocytogenes]
gi|112959538|gb|ABI27296.1| truncated internalin A [Listeria monocytogenes]
gi|112959542|gb|ABI27298.1| truncated internalin A [Listeria monocytogenes]
gi|112959548|gb|ABI27301.1| truncated internalin A [Listeria monocytogenes]
Length = 542
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 116/358 (32%), Positives = 171/358 (47%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 35 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 88
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 89 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQL--SFGNQVTD--LKPL 140
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 141 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 193
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 194 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 247
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 248 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 305
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 306 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNY 361
>gi|46906689|ref|YP_013078.1| internalin A [Listeria monocytogenes serotype 4b str. F2365]
gi|254932755|ref|ZP_05266114.1| internalin A [Listeria monocytogenes HPB2262]
gi|405748809|ref|YP_006672275.1| internalin A [Listeria monocytogenes ATCC 19117]
gi|405751670|ref|YP_006675135.1| internalin A [Listeria monocytogenes SLCC2378]
gi|417316727|ref|ZP_12103366.1| internalin A [Listeria monocytogenes J1-220]
gi|424713328|ref|YP_007014043.1| Internalin-A [Listeria monocytogenes serotype 4b str. LL195]
gi|424822183|ref|ZP_18247196.1| Internalin-A [Listeria monocytogenes str. Scott A]
gi|50400895|sp|Q723K6.1|INLA_LISMF RecName: Full=Internalin-A; Flags: Precursor
gi|46879954|gb|AAT03255.1| internalin A [Listeria monocytogenes serotype 4b str. F2365]
gi|130774757|gb|ABO32393.1| InlA [Listeria monocytogenes]
gi|130774763|gb|ABO32396.1| InlA [Listeria monocytogenes]
gi|130774781|gb|ABO32405.1| InlA [Listeria monocytogenes]
gi|130774785|gb|ABO32407.1| InlA [Listeria monocytogenes]
gi|130774789|gb|ABO32409.1| InlA [Listeria monocytogenes]
gi|167861870|gb|ACA05634.1| InlA [Listeria monocytogenes]
gi|167861880|gb|ACA05639.1| InlA [Listeria monocytogenes]
gi|167861882|gb|ACA05640.1| InlA [Listeria monocytogenes]
gi|167861884|gb|ACA05641.1| InlA [Listeria monocytogenes]
gi|167861886|gb|ACA05642.1| InlA [Listeria monocytogenes]
gi|167861896|gb|ACA05647.1| InlA [Listeria monocytogenes]
gi|167861898|gb|ACA05648.1| InlA [Listeria monocytogenes]
gi|167861910|gb|ACA05654.1| InlA [Listeria monocytogenes]
gi|167861912|gb|ACA05655.1| InlA [Listeria monocytogenes]
gi|167861952|gb|ACA05675.1| InlA [Listeria monocytogenes]
gi|167861958|gb|ACA05678.1| InlA [Listeria monocytogenes]
gi|167861960|gb|ACA05679.1| InlA [Listeria monocytogenes]
gi|167861966|gb|ACA05682.1| InlA [Listeria monocytogenes]
gi|167861988|gb|ACA05693.1| InlA [Listeria monocytogenes]
gi|167861996|gb|ACA05697.1| InlA [Listeria monocytogenes]
gi|167862008|gb|ACA05703.1| InlA [Listeria monocytogenes]
gi|167862010|gb|ACA05704.1| InlA [Listeria monocytogenes]
gi|167862014|gb|ACA05706.1| InlA [Listeria monocytogenes]
gi|167862016|gb|ACA05707.1| InlA [Listeria monocytogenes]
gi|194239380|emb|CAQ76830.1| internalin A [Listeria monocytogenes]
gi|194239394|emb|CAQ76837.1| internalin A [Listeria monocytogenes]
gi|194326167|emb|CAQ77242.1| internalin A [Listeria monocytogenes]
gi|223006786|gb|ACM69350.1| internalin A [Listeria monocytogenes]
gi|223006788|gb|ACM69351.1| internalin A [Listeria monocytogenes]
gi|223006798|gb|ACM69356.1| internalin A [Listeria monocytogenes]
gi|223006804|gb|ACM69359.1| internalin A [Listeria monocytogenes]
gi|223006810|gb|ACM69362.1| internalin A [Listeria monocytogenes]
gi|293584308|gb|EFF96340.1| internalin A [Listeria monocytogenes HPB2262]
gi|294358391|gb|ADE73848.1| InlA [Listeria monocytogenes]
gi|294358403|gb|ADE73854.1| InlA [Listeria monocytogenes]
gi|298359884|gb|ADI77521.1| internalin A [Listeria monocytogenes]
gi|298359898|gb|ADI77528.1| internalin A [Listeria monocytogenes]
gi|298359902|gb|ADI77530.1| internalin A [Listeria monocytogenes]
gi|298359908|gb|ADI77533.1| internalin A [Listeria monocytogenes]
gi|298359940|gb|ADI77549.1| internalin A [Listeria monocytogenes]
gi|298359948|gb|ADI77553.1| internalin A [Listeria monocytogenes]
gi|298360056|gb|ADI77607.1| internalin A [Listeria monocytogenes]
gi|298360094|gb|ADI77626.1| internalin A [Listeria monocytogenes]
gi|298360148|gb|ADI77653.1| internalin A [Listeria monocytogenes]
gi|298360270|gb|ADI77714.1| internalin A [Listeria monocytogenes]
gi|298360288|gb|ADI77723.1| internalin A [Listeria monocytogenes]
gi|298360324|gb|ADI77741.1| internalin A [Listeria monocytogenes]
gi|298360326|gb|ADI77742.1| internalin A [Listeria monocytogenes]
gi|298360350|gb|ADI77754.1| internalin A [Listeria monocytogenes]
gi|298360362|gb|ADI77760.1| internalin A [Listeria monocytogenes]
gi|298360456|gb|ADI77807.1| internalin A [Listeria monocytogenes]
gi|298360480|gb|ADI77819.1| internalin A [Listeria monocytogenes]
gi|298360508|gb|ADI77833.1| internalin A [Listeria monocytogenes]
gi|298360520|gb|ADI77839.1| internalin A [Listeria monocytogenes]
gi|298360554|gb|ADI77856.1| internalin A [Listeria monocytogenes]
gi|298360632|gb|ADI77895.1| internalin A [Listeria monocytogenes]
gi|298360634|gb|ADI77896.1| internalin A [Listeria monocytogenes]
gi|298360662|gb|ADI77910.1| internalin A [Listeria monocytogenes]
gi|328475915|gb|EGF46639.1| internalin A [Listeria monocytogenes J1-220]
gi|332310863|gb|EGJ23958.1| Internalin-A [Listeria monocytogenes str. Scott A]
gi|340052073|emb|CBY84388.1| internalin A [Listeria monocytogenes]
gi|340052075|emb|CBY84389.1| internalin A [Listeria monocytogenes]
gi|404218009|emb|CBY69373.1| internalin A (LPXTG motif) [Listeria monocytogenes ATCC 19117]
gi|404220870|emb|CBY72233.1| internalin A (LPXTG motif) [Listeria monocytogenes SLCC2378]
gi|424012512|emb|CCO63052.1| Internalin-A [Listeria monocytogenes serotype 4b str. LL195]
gi|443428812|gb|AGC92205.1| internalin A [Listeria monocytogenes]
gi|443428814|gb|AGC92206.1| internalin A [Listeria monocytogenes]
gi|443428816|gb|AGC92207.1| internalin A [Listeria monocytogenes]
gi|443428818|gb|AGC92208.1| internalin A [Listeria monocytogenes]
gi|443428826|gb|AGC92212.1| internalin A [Listeria monocytogenes]
gi|443428836|gb|AGC92217.1| internalin A [Listeria monocytogenes]
gi|443428840|gb|AGC92219.1| internalin A [Listeria monocytogenes]
gi|443428852|gb|AGC92225.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 117/358 (32%), Positives = 171/358 (47%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNY 424
>gi|167862002|gb|ACA05700.1| InlA [Listeria monocytogenes]
Length = 800
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 117/358 (32%), Positives = 171/358 (47%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNY 424
>gi|322952092|gb|ADX21045.1| internalin A [Listeria monocytogenes]
gi|322952094|gb|ADX21046.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 117/358 (32%), Positives = 171/358 (47%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNY 424
>gi|340052071|emb|CBY84387.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 117/358 (32%), Positives = 171/358 (47%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNY 424
>gi|298359896|gb|ADI77527.1| internalin A [Listeria monocytogenes]
Length = 797
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 117/358 (32%), Positives = 171/358 (47%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNY 424
>gi|223006806|gb|ACM69360.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 117/358 (32%), Positives = 171/358 (47%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNY 424
>gi|219821369|gb|ACL37824.1| internalin A [Listeria monocytogenes]
Length = 739
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 117/358 (32%), Positives = 171/358 (47%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 252
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 253 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 310
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 311 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNY 366
>gi|404406915|ref|YP_006689630.1| internalin A [Listeria monocytogenes SLCC2376]
gi|130774829|gb|ABO32427.1| InlA [Listeria monocytogenes]
gi|167861972|gb|ACA05685.1| InlA [Listeria monocytogenes]
gi|194326147|emb|CAQ77232.1| internalin A [Listeria monocytogenes]
gi|404241064|emb|CBY62464.1| internalin A (LPXTG motif) [Listeria monocytogenes SLCC2376]
Length = 800
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 117/358 (32%), Positives = 171/358 (47%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNY 424
>gi|85679228|gb|ABC72030.1| InlA [Listeria monocytogenes]
Length = 794
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 117/358 (32%), Positives = 171/358 (47%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 97 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 150
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 151 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 202
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 203 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 255
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 256 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 309
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 310 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 367
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 368 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNY 423
>gi|17548893|ref|NP_522233.1| GALA protein [Ralstonia solanacearum GMI1000]
Length = 981
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 106/339 (31%), Positives = 157/339 (46%), Gaps = 7/339 (2%)
Query: 57 SSLLSVDLSG---SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ +DLSG S V+++GL +L L SLD + I + G + L ++LTSL+
Sbjct: 577 PSVRHLDLSGCTGSAVSEAGLAYLARLP-LASLDLSDT-GIGNRGAQALAASASLTSLNL 634
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
N I G +A L LD+ + G L G L SL ++ I D +
Sbjct: 635 S-GNGIGTAGAEALGRNTVLTALDISANPIRNAGAQALAGSRSLTSLELR-DTGIEDGGI 692
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
+ L+ T L+SL IS + ++D A L + LT L GC +T L+ + SL L
Sbjct: 693 EALAANTVLRSLDISGNDLSDQSAAALAANRTLTSLKANGCGLTNDMAQQLARIRSLRTL 752
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+ + D G ++ SL+ LNL N IT + L L L+SL++ G GD G
Sbjct: 753 EVGSNSIGDAGVLTIARNASLRSLNLSRNPITPQGLYPLALSRTLKSLDVSRIGCGDRGA 812
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
+ L+G L L+L +V S G R L+ L S++L I + R LA L SL
Sbjct: 813 LLLSGNRALTSLKLGFNRVSSEGARRLAANRTLVSLDLRGNTIDVAAARALANAEPLASL 872
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
N+ ++ D AL LT LD+ R++ A L
Sbjct: 873 NVSDCRLDDAVACALAESRTLTSLDVSWNRLSHRAARAL 911
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 78/287 (27%), Positives = 126/287 (43%), Gaps = 8/287 (2%)
Query: 43 GVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGG--LE 100
G+ D ++ +A+ + L S+D+SG+D++D L L SL N C +D L
Sbjct: 686 GIEDGGIEALAAN-TVLRSLDISGNDLSDQSAAALAANRTLTSLKANGCGLTNDMAQQLA 744
Query: 101 HLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 160
+R L L S N+I G+ A +L L+L R GL L L+SL
Sbjct: 745 RIRSLRTLEVGS----NSIGDAGVLTIARNASLRSLNLSRNPITPQGLYPLALSRTLKSL 800
Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 220
++ C D LSG L SL++ ++V+ G L + L L+L G + A
Sbjct: 801 DVSRIGC-GDRGALLLSGNRALTSLKLGFNRVSSEGARRLAANRTLVSLDLRGNTIDVAA 859
Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 280
+L+ L LN++ C+L D ++ +L L++ +N ++ L L S
Sbjct: 860 ARALANAEPLASLNVSDCRLDDAVACALAESRTLTSLDVSWNRLSHRAARALANNPVLAS 919
Query: 281 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 327
L + IG EG L +L L+ ++G +G R L T +
Sbjct: 920 LYISHNDIGPEGAQALADSASLTFLDARANRIGEAGARLLEANTRMR 966
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 65/217 (29%), Positives = 92/217 (42%), Gaps = 47/217 (21%)
Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
D + LSGL + L+ +LKG TL +L+ P T L
Sbjct: 40 DRRALSGLRDHPHLES----------VHLKG--DFTLADLKALPTT------------LR 75
Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
+L+L+ C GS K + +L GL LESLN+ IGD
Sbjct: 76 HLDLSEC------------TGSAKSF---------RAIAYLAGLP-LESLNVAGAEIGDG 113
Query: 292 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 351
G L +LK L + + +SG R L+ LES++L+ I D + LAG SL+
Sbjct: 114 GARLLAANPSLKSLNAASGGISASGARMLAESPTLESLDLTQNAIGDAGAQALAGSRSLR 173
Query: 352 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 388
L + +TD G AL L LDL G +T++G
Sbjct: 174 HLAVRNGLVTDLGTRALALNPALVSLDL-GNLVTETG 209
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 100/229 (43%), Gaps = 16/229 (6%)
Query: 133 LVKLDLERCT---RIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISC 189
L LDL CT + + L GL LESLN+ I D + L+ +LKSL +
Sbjct: 74 LRHLDLSECTGSAKSFRAIAYLAGL-PLESLNVAGAE-IGDGGARLLAANPSLKSLNAAS 131
Query: 190 SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 249
++ SG L L L+L + A +L+ SL +L + ++D G +
Sbjct: 132 GGISASGARMLAESPTLESLDLTQNAIGDAGAQALAGSRSLRHLAVRNGLVTDLGTRALA 191
Query: 250 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG--IGDEGLVNLTGLCNLKCLEL 307
+L L+LG N +T+ +E D I +G L +LK L +
Sbjct: 192 LNPALVSLDLG-NLVTETG-------NQVEQDGYDKTANNITAQGAWALAQNRSLKSLSV 243
Query: 308 SDTQV-GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355
+ G G+R L+ L S+N++FT ++ S + LA L SL++
Sbjct: 244 QGNDLCGDDGVRALARNRTLTSLNVAFTNMTSASAKALADNPVLTSLSV 292
>gi|219821363|gb|ACL37820.1| internalin A [Listeria monocytogenes]
Length = 742
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 117/358 (32%), Positives = 171/358 (47%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 94 NQIT--DINPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL--SFGNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 252
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 253 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 310
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 311 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNY 366
>gi|219821297|gb|ACL37776.1| internalin A [Listeria monocytogenes]
gi|219821303|gb|ACL37780.1| internalin A [Listeria monocytogenes]
Length = 742
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 117/358 (32%), Positives = 171/358 (47%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQL--SFGNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 252
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 253 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 310
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 311 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNY 366
>gi|219821264|gb|ACL37754.1| internalin A [Listeria monocytogenes]
gi|219821306|gb|ACL37782.1| internalin A [Listeria monocytogenes]
Length = 742
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 117/358 (32%), Positives = 171/358 (47%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQL--SFGNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 252
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 253 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 310
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 311 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNY 366
>gi|167861906|gb|ACA05652.1| InlA [Listeria monocytogenes]
Length = 800
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 117/358 (32%), Positives = 171/358 (47%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNY 424
>gi|223006796|gb|ACM69355.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 117/358 (32%), Positives = 171/358 (47%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNY 424
>gi|219821282|gb|ACL37766.1| internalin A [Listeria monocytogenes]
Length = 742
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 107/329 (32%), Positives = 167/329 (50%), Gaps = 39/329 (11%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQL--SFGNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 252
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
+L GL L LEL++ Q+ + +S L NL + L F ISD + ++ L+ L+ L
Sbjct: 253 SSLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRL 308
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGA 382
+++D ++SL LT+++ A
Sbjct: 309 FFYNNKVSD-----VSSLANLTNINWLSA 332
>gi|18413537|emb|CAD21866.1| hypothetical leucine-rich repeat protein 1 (LRRP1) [Trypanosoma
brucei]
Length = 1393
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 102/344 (29%), Positives = 155/344 (45%), Gaps = 40/344 (11%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC 91
AL +L L G+N W + Q L LS + +TD + H +C NL +LD +FC
Sbjct: 555 ALNELNLSNCFGINAGWEAIEKLQ--QLHVAILSNTHITDRDISHFSNCKNLITLDLSFC 612
Query: 92 IQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL 151
++ D + LSN+T+L +L+L+ C+ I GL L
Sbjct: 613 NKLLD-----VTALSNITTLE----------------------ELNLDSCSNIRKGLSVL 645
Query: 152 KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLN 210
L +L LNIK + DS + L + L + +C D +A L L L LN
Sbjct: 646 GELPRLCVLNIKGVQ-LEDSVIVSLGNGNSFVRLSLENCKGFGD--VAPLSNLVTLEELN 702
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS-LKVLNL-GFNEITDEC 268
L C + + +L L L L+L R Q+ D+ E S L LNL +IT
Sbjct: 703 LHYCDKVTSGMGTLGRLLQLRVLDLGRTQVDDNSLENICTCSSPLVSLNLSNCKKITS-- 760
Query: 269 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 328
+ + LT LE LN+D+C G L L+ LS+T+ +RH+S +L +
Sbjct: 761 ISAIASLTALEELNIDNCCNVTSGWNVFGTLHQLRVATLSNTRTNDENIRHVSECKSLNT 820
Query: 329 INLSF-TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 371
+NL+F I+D + L+ ++ L+ LNLD G+ L +L
Sbjct: 821 LNLAFCKDITD--VTALSKITMLEELNLDCCHNIRKGIETLGTL 862
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 91/348 (26%), Positives = 149/348 (42%), Gaps = 57/348 (16%)
Query: 94 ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
I + HL + L L+ +T ++ + L NL L+L + +
Sbjct: 189 IDNNDARHLFNIGTLEELAITDTMQLT--NIRGISRLTNLKCLELNSTNIDDSCVRRICA 246
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
+KL L++ CN ITD+ P+S L+ L+ L +S +T GI L L +L +L+L G
Sbjct: 247 CVKLSKLSVSECNNITDA--TPISQLSALEELNLSNCHIT-KGIGTLGMLLRLRILDLSG 303
Query: 214 CPVTAACLDSLSALGSLFYLNLN-RCQLSD---------------DGCEKFSK------- 250
PV CL L GSL LN++ R QL+D +GC + ++
Sbjct: 304 VPVEDNCLKDLCDCGSLERLNISYRIQLTDINPLSNATAIEELNLNGCRRITRGIGVVWA 363
Query: 251 IGSLKVLNLGFNEIT------------------DEC-----LVHLKGLTNLESLNLDSCG 287
+ L+VL++ ++ D C + L + LE LN+ C
Sbjct: 364 LPKLRVLHMKDVHLSEPSLDSVGTGGPLVKVSLDNCAGFGDMTLLSSIVTLEELNIQKCA 423
Query: 288 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAG 346
G+ L L L+ L + + + S + +L +N+ S TG+S+ + LA
Sbjct: 424 DIISGVGCLGTLPYLRVLNIKEAHISSLDFTGIGASKSLLQLNMESITGLSN--VEALAN 481
Query: 347 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRS 394
+ +L+ L+L D G+ L +L L LDL G T++ LRS
Sbjct: 482 ILTLEKLSLHGCTGIDAGIGCLGNLPQLKMLDLSG---TNTDNESLRS 526
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 97/395 (24%), Positives = 153/395 (38%), Gaps = 98/395 (24%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
+DLSG V D+ L L DC +L+ L+ ++ IQ++D + LSN T++
Sbjct: 299 LDLSGVPVEDNCLKDLCDCGSLERLNISYRIQLTD-----INPLSNATAIE--------- 344
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC---------------- 165
+L+L C RI G+ + L KL L++K
Sbjct: 345 -------------ELNLNGCRRITRGIGVVWALPKLRVLHMKDVHLSEPSLDSVGTGGPL 391
Query: 166 ------NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
NC DM LS + L+ L I SG+ L L L +LN++ +++
Sbjct: 392 VKVSLDNCAGFGDMTLLSSIVTLEELNIQKCADIISGVGCLGTLPYLRVLNIKEAHISSL 451
Query: 220 CLDSLSALGSLFYLN-----------------------LNRCQLSDDGCEKFSKIGSLKV 256
+ A SL LN L+ C D G + LK+
Sbjct: 452 DFTGIGASKSLLQLNMESITGLSNVEALANILTLEKLSLHGCTGIDAGIGCLGNLPQLKM 511
Query: 257 LNLGFNEITDECL-----------------------VHLKGLTNLESLNLDSCGIGDEGL 293
L+L +E L H+ L L LNL +C + G
Sbjct: 512 LDLSGTNTDNESLRSLCLSQTVVSLNLSHCWKMTNVSHISSLEALNELNLSNCFGINAGW 571
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKS 352
+ L L LS+T + + H S NL +++LSF + D + L+ +++L+
Sbjct: 572 EAIEKLQQLHVAILSNTHITDRDISHFSNCKNLITLDLSFCNKLLD--VTALSNITTLEE 629
Query: 353 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 387
LNLD+ GL+ L L L L++ G ++ DS
Sbjct: 630 LNLDSCSNIRKGLSVLGELPRLCVLNIKGVQLEDS 664
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 92/372 (24%), Positives = 150/372 (40%), Gaps = 69/372 (18%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISD-------------------GGLEHLRG 104
LS + +T + L C L L F C ++SD GL+ L
Sbjct: 1014 LSDTKITAKDIACLSSCKKLVKLKFFRCKKLSDVTVVYKIQSLEELIVTSCSDGLKGLNA 1073
Query: 105 LSNLTSLSFR--RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
L L L F RN + +++ +LV+L +E + + L + LE L++
Sbjct: 1074 LGTLPRLRFHHLRNVRGSDISVESIGTSKSLVRLHIEVGEEL-TDITPLSNITSLEELSL 1132
Query: 163 KWCNCITDSDMKP-----LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
+ D P L L LKSL + S+++DS + + + +T LNL+
Sbjct: 1133 R------DYRKPPEGVGTLGKLPRLKSLDLGLSRISDSTLYCICLSRSITSLNLDS-SWK 1185
Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE---------- 267
+ +S L +L LNL C G + S++ L+VLNL F +T
Sbjct: 1186 LTDISHISNLTALEELNLGGCYYITSGWKALSELPRLRVLNLEFTRVTTRDGGYYISRCK 1245
Query: 268 ----------------CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 311
CL ++K LE L++ C +G L L L+ L L +
Sbjct: 1246 YLVTLNLELCDMTDASCLANIK---TLEELHIGGCDELTQGFSALFTLPQLRILNLICSL 1302
Query: 312 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL----DARQITDTGLAA 367
+ LR + +E +NLS+ + + L + S+K L+L D R+ T+ G +
Sbjct: 1303 ITDEDLREIQPPHTIEELNLSYC-VELNDITPLGRIKSIKKLHLRQRHDVRRPTE-GFRS 1360
Query: 368 LTSLTGLTHLDL 379
L L L+ +DL
Sbjct: 1361 LLELPCLSWVDL 1372
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 107/231 (46%), Gaps = 9/231 (3%)
Query: 168 ITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 226
IT D+ LS L L+ C K++D + Y +Q L L + C L++L
Sbjct: 1019 ITAKDIACLSSCKKLVKLKFFRCKKLSDVTVVY--KIQSLEELIVTSCSDGLKGLNALGT 1076
Query: 227 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDS 285
L L + +L + SD E SL L++ E+TD + L +T+LE L+L
Sbjct: 1077 LPRLRFHHLRNVRGSDISVESIGTSKSLVRLHIEVGEELTD--ITPLSNITSLEELSLRD 1134
Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKL 344
EG+ L L LK L+L +++ S L + ++ S+NL S ++D S +
Sbjct: 1135 YRKPPEGVGTLGKLPRLKSLDLGLSRISDSTLYCICLSRSITSLNLDSSWKLTDIS--HI 1192
Query: 345 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRSK 395
+ L++L+ LNL +G AL+ L L L+L R+T Y S+
Sbjct: 1193 SNLTALEELNLGGCYYITSGWKALSELPRLRVLNLEFTRVTTRDGGYYISR 1243
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 65/202 (32%), Positives = 97/202 (48%), Gaps = 13/202 (6%)
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS-GIAYLKGLQKLTL 208
++ L LE LN+ C IT S K LS L L+ L + ++VT G Y+ + L
Sbjct: 1191 HISNLTALEELNLGGCYYIT-SGWKALSELPRLRVLNLEFTRVTTRDGGYYISRCKYLVT 1249
Query: 209 LNLEGCPVT-AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 267
LNLE C +T A+CL ++ L L ++ C G + L++LNL + ITDE
Sbjct: 1250 LNLELCDMTDASCLANIKTLEEL---HIGGCDELTQGFSALFTLPQLRILNLICSLITDE 1306
Query: 268 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS---DTQVGSSGLRHLSGLT 324
L ++ +E LNL C + + L + ++K L L D + + G R L L
Sbjct: 1307 DLREIQPPHTIEELNLSYC-VELNDITPLGRIKSIKKLHLRQRHDVRRPTEGFRSLLELP 1365
Query: 325 NLESINL-SFTGISDGS--LRK 343
L ++L + G SD S LRK
Sbjct: 1366 CLSWVDLDNVYGWSDVSCELRK 1387
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 112/428 (26%), Positives = 174/428 (40%), Gaps = 109/428 (25%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISD-------GGLEHL---------RGLSN 107
LS + D + H+ +C +L +L+ FC I+D LE L +G+
Sbjct: 799 LSNTRTNDENIRHVSECKSLNTLNLAFCKDITDVTALSKITMLEELNLDCCHNIRKGIET 858
Query: 108 LTSLSFRRNNAIT--------AQGMKAFAGLINLVKLDLERCT-RI-------------- 144
L +L R ++ AQ +LVKL+LER RI
Sbjct: 859 LGTLPKARILSMKECYMGDGYAQQCSILGNSKSLVKLNLERSRGRISVKALSNVATLEEL 918
Query: 145 ---HGGLV----NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSG 196
H V + L +L LN+K+ + I K +S +L+SL +S C VTD
Sbjct: 919 VLDHARKVCCIPSFSCLPRLRVLNLKYTD-INGDVTKNISESKSLRSLNLSHCKWVTDIS 977
Query: 197 IAY-------------------LKGLQKLTLLN---LEGCPVTAACLDSLSALGSLFYLN 234
+ + L KL LL L +TA + LS+ L L
Sbjct: 978 VLSSLLTLEELNVNCCNGIRKGWESLGKLPLLRVAILSDTKITAKDIACLSSCKKLVKLK 1037
Query: 235 LNRCQ-LSD-------------------DGCEKFSKIGSLKVL------NLGFNEITDEC 268
RC+ LSD DG + + +G+L L N+ ++I+ E
Sbjct: 1038 FFRCKKLSDVTVVYKIQSLEELIVTSCSDGLKGLNALGTLPRLRFHHLRNVRGSDISVES 1097
Query: 269 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE---LSDTQVGSSGLRHLSGLTN 325
+ K L L +G+E L ++T L N+ LE L D + G+ L L
Sbjct: 1098 IGTSKSLVRLH------IEVGEE-LTDITPLSNITSLEELSLRDYRKPPEGVGTLGKLPR 1150
Query: 326 LESINLSFTGISDGSLRKLAGLSSLKSLNLDAR-QITDTGLAALTSLTGLTHLDLFGARI 384
L+S++L + ISD +L + S+ SLNLD+ ++TD ++ +++LT L L+L G
Sbjct: 1151 LKSLDLGLSRISDSTLYCICLSRSITSLNLDSSWKLTD--ISHISNLTALEELNLGGCYY 1208
Query: 385 TDSGAAYL 392
SG L
Sbjct: 1209 ITSGWKAL 1216
>gi|116621127|ref|YP_823283.1| hypothetical protein Acid_2008 [Candidatus Solibacter usitatus
Ellin6076]
gi|116224289|gb|ABJ82998.1| hypothetical protein Acid_2008 [Candidatus Solibacter usitatus
Ellin6076]
Length = 248
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 66/221 (29%), Positives = 113/221 (51%), Gaps = 8/221 (3%)
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL 209
L+ LE L I W IT+ ++P+S +T L + + V D + +L+ L++L L
Sbjct: 21 KLESRRDLEELVI-WGGAITNDRLEPVSRMTWLTGVGLGEVPVDDGVLVHLQPLRELECL 79
Query: 210 NLEGCPVTAACLDSLSALGS-LFYLNLNRCQLSDDGCEK-FSKIGSLKVLNLGFNEITDE 267
NL VT D LG+ L + L C+ + D C + ++ +L+ + + +TD+
Sbjct: 80 NLAYTGVTG---DFTRLLGTPLRDVRLEGCRRTGDACARSLARFPTLRQVEMHMTGLTDD 136
Query: 268 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 327
L + L LE L L I D G+ + G NL+ L++ + G+R L+GL L+
Sbjct: 137 GLAAMAALP-LEVLWLGP-RITDRGMETIGGFANLRHLDICTHLITDEGVRALAGLQQLQ 194
Query: 328 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 368
+ L+ + +SD S+ L+ + L+ LN++ +IT GLA L
Sbjct: 195 VLWLTRSRVSDASIEVLSQFTGLRELNVNYTEITAQGLARL 235
Score = 45.1 bits (105), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 64/150 (42%), Gaps = 25/150 (16%)
Query: 262 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 321
+++ D L+ +LE L + I ++ L ++ + L + L + V L HL
Sbjct: 12 DQVDDALWRKLESRRDLEELVIWGGAITNDRLEPVSRMTWLTGVGLGEVPVDDGVLVHLQ 71
Query: 322 GLTNLESINLSFTGIS-----------------------DGSLRKLAGLSSLKSLNLDAR 358
L LE +NL++TG++ D R LA +L+ + +
Sbjct: 72 PLRELECLNLAYTGVTGDFTRLLGTPLRDVRLEGCRRTGDACARSLARFPTLRQVEMHMT 131
Query: 359 QITDTGLAALTSLTGLTHLDLFGARITDSG 388
+TD GLAA+ +L + G RITD G
Sbjct: 132 GLTDDGLAAMAALP--LEVLWLGPRITDRG 159
Score = 41.6 bits (96), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 49/85 (57%), Gaps = 5/85 (5%)
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRI--HGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
IT +GM+ G NL LD+ CT + G+ L GL +L+ L + + ++D+ ++ L
Sbjct: 155 ITDRGMETIGGFANLRHLDI--CTHLITDEGVRALAGLQQLQVLWLT-RSRVSDASIEVL 211
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLK 201
S T L+ L ++ +++T G+A LK
Sbjct: 212 SQFTGLRELNVNYTEITAQGLARLK 236
>gi|300693896|ref|YP_003749869.1| type III effector protein [Ralstonia solanacearum PSI07]
gi|299075933|emb|CBJ35242.1| leucine-rich-repeat type III effector protein (GALA2) [Ralstonia
solanacearum PSI07]
Length = 1002
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 102/339 (30%), Positives = 157/339 (46%), Gaps = 7/339 (2%)
Query: 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
G L S+DLS + + D G L ++L SL+ + +ISD G ++LTSL+ R
Sbjct: 599 GRKLESLDLSDTPIGDRGAQLLASSTSLTSLNLSGN-EISDAGAAAFADNTSLTSLNLRG 657
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI--KWCNCITDSDM 173
N+ I+ G +A L LD+ + G+ L L SLN+ W I D +
Sbjct: 658 NH-ISDAGAEALGRNTVLTSLDVSANPIGNTGVQALASSRSLTSLNLCSTW---IEDEGV 713
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
+ L+ T L+SL IS ++ A L + L L C +T L+++ SL L
Sbjct: 714 EALASNTVLRSLDISHNRFGAQFAAELAQNRTLASLKANHCSLTNNVAQQLASIRSLTAL 773
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
L+ + D G + + SL+ L+L N I L L L SL++ G GD G
Sbjct: 774 ELSSNLIDDAGVQAIVRNASLRSLDLSQNPIGLGGLHALALSRTLTSLDVSCIGCGDRGG 833
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
+ L+ +L L+L + S G++ L+ +L S++LS I + R LA L SL
Sbjct: 834 LVLSKSRSLTLLKLGSNGIASEGVQILAANRSLISLDLSGNTIDVVAARALAKNPRLASL 893
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
N + + D ++AL LT LD+ R+ GA L
Sbjct: 894 NASSCGLDDAAVSALAESRSLTSLDVSKNRLFSPGARAL 932
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 84/294 (28%), Positives = 131/294 (44%), Gaps = 13/294 (4%)
Query: 95 SDGGLEHLRGLS----NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGL-- 148
S G R LS NL + R +T AF+ L N L+ HG L
Sbjct: 510 SHAGPRTRRALSTVSRNLRDAAVARTKHLTVWDKAAFSRLGNYSALE---SLSFHGNLTI 566
Query: 149 VNLKGLMK-LESLNIKWCN--CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK 205
+LK L + L++ C ++ + + L+G L+SL +S + + D G L
Sbjct: 567 ADLKALPPSVRHLDLSGCTGTAVSGAGLAYLAG-RKLESLDLSDTPIGDRGAQLLASSTS 625
Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265
LT LNL G ++ A + + SL LNL +SD G E + L L++ N I
Sbjct: 626 LTSLNLSGNEISDAGAAAFADNTSLTSLNLRGNHISDAGAEALGRNTVLTSLDVSANPIG 685
Query: 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 325
+ + L +L SLNL S I DEG+ L L+ L++S + G+ L+
Sbjct: 686 NTGVQALASSRSLTSLNLCSTWIEDEGVEALASNTVLRSLDISHNRFGAQFAAELAQNRT 745
Query: 326 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
L S+ + +++ ++LA + SL +L L + I D G+ A+ L LDL
Sbjct: 746 LASLKANHCSLTNNVAQQLASIRSLTALELSSNLIDDAGVQAIVRNASLRSLDL 799
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 76/280 (27%), Positives = 125/280 (44%), Gaps = 4/280 (1%)
Query: 76 HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135
L + S L+SL F+ + I+D L+ L LS A++ G+ AG L
Sbjct: 548 RLGNYSALESLSFHGNLTIAD--LKALPPSVRHLDLSGCTGTAVSGAGLAYLAGR-KLES 604
Query: 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS 195
LDL G L L SLN+ N I+D+ + T+L SL + + ++D+
Sbjct: 605 LDLSDTPIGDRGAQLLASSTSLTSLNLS-GNEISDAGAAAFADNTSLTSLNLRGNHISDA 663
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G L LT L++ P+ + +L++ SL LNL + D+G E + L+
Sbjct: 664 GAEALGRNTVLTSLDVSANPIGNTGVQALASSRSLTSLNLCSTWIEDEGVEALASNTVLR 723
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 315
L++ N + L L SL + C + + L + +L LELS + +
Sbjct: 724 SLDISHNRFGAQFAAELAQNRTLASLKANHCSLTNNVAQQLASIRSLTALELSSNLIDDA 783
Query: 316 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355
G++ + +L S++LS I G L LA +L SL++
Sbjct: 784 GVQAIVRNASLRSLDLSQNPIGLGGLHALALSRTLTSLDV 823
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 63/131 (48%), Gaps = 1/131 (0%)
Query: 264 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 323
++ L +L G LESL+L IGD G L +L L LS ++ +G +
Sbjct: 589 VSGAGLAYLAG-RKLESLDLSDTPIGDRGAQLLASSTSLTSLNLSGNEISDAGAAAFADN 647
Query: 324 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 383
T+L S+NL ISD L + L SL++ A I +TG+ AL S LT L+L
Sbjct: 648 TSLTSLNLRGNHISDAGAEALGRNTVLTSLDVSANPIGNTGVQALASSRSLTSLNLCSTW 707
Query: 384 ITDSGAAYLRS 394
I D G L S
Sbjct: 708 IEDEGVEALAS 718
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 92/333 (27%), Positives = 138/333 (41%), Gaps = 28/333 (8%)
Query: 72 SGLIHLKDCSNLQSLDFNFCIQISDG-GLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL 130
S + H + LQ + + I D L LR NL S+ + N T +KA
Sbjct: 74 SAVYHDPQTAALQRVTH---LSIHDQRALSELRYYPNLESVHLKGN--FTLADLKALPA- 127
Query: 131 INLVKLDLERCT---RIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
L+ LDL CT R + L L LESLN+K I D + L+ +LK+L +
Sbjct: 128 -TLLHLDLSECTGSARSSKAIAYLASL-PLESLNVKGAQ-IGDHGARLLAANPSLKTLNM 184
Query: 188 SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 247
+ + +G A L + L L+L + + +L+A SL L ++ C ++D G E
Sbjct: 185 AIGGIGAAGAANLAESRTLMSLDLTQNKIGDKGVQALAASRSLTNLTVSNCLVTDIGLEA 244
Query: 248 FSKIGSLKVLNLG--FNEITDECLVHLKGLTNLESLNLDSCG--IGDEGLVNLTGLCNLK 303
++ +L L+LG + DE E + D I +G L +L
Sbjct: 245 LARSRTLTSLDLGNLVSATYDEA----------EQADFDRTANDITVKGTRALVQSPSLT 294
Query: 304 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR-QITD 362
L + G +G+ L+ L +N++FT + S R LA L SLN+ I
Sbjct: 295 SLSVQGNLCGDAGVLELAKSRTLTHLNVAFTNMGPVSARALARNPVLTSLNVRWNYDIGT 354
Query: 363 TGLAALTSLTGLTHLDLFGARITDSGAAYLRSK 395
G LT L LD A I G L +K
Sbjct: 355 EGALELTKSESLISLDARDASIGAEGVLALEAK 387
>gi|290977840|ref|XP_002671645.1| member of the leucine-rich repeat protein family [Naegleria
gruberi]
gi|284085215|gb|EFC38901.1| member of the leucine-rich repeat protein family [Naegleria
gruberi]
Length = 392
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 72/274 (26%), Positives = 130/274 (47%), Gaps = 4/274 (1%)
Query: 125 KAFAGLIN--LVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNL 182
K F+ ++ LV LD++ G+ + L KL LN+ + N I+ K LS + L
Sbjct: 99 KIFSAMMKNRLVDLDMKMNNIGDIGVSYISNLTKLTKLNVSY-NRISSEGAKYLSKMKQL 157
Query: 183 KSLQISCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
L IS +K+ + G ++ G+++LT LN+ + + + AL L LN+ ++
Sbjct: 158 TYLDISHNKIGEDGSKFICNGIRQLTHLNIYYNEIGVRGVKFIGALKQLTSLNVGGNRIG 217
Query: 242 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN 301
D G E ++ L LN+ N I E + +T L +LN+ IGD+G ++ +
Sbjct: 218 DQGIEHLMRMHQLVDLNISNNNIRVEGAKLVSEMTQLTNLNIRKNIIGDDGAKYISEMKQ 277
Query: 302 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 361
L L++ + + G +++S + L ++++ I + + + L +LNL+ IT
Sbjct: 278 LIKLDIGKNYLSNRGAKYISEMKYLTNLDIRSNNIREEGAEFIGEMKQLTNLNLNGNYIT 337
Query: 362 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRSK 395
D G+ L L L L ++ I A L S+
Sbjct: 338 DEGIKHLCGLYQLVSLSIYNTGIQMEDGAKLLSE 371
Score = 45.1 bits (105), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 76/159 (47%), Gaps = 3/159 (1%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
+I D G+EHL + L L+ NN I +G K + + L L++ + G +
Sbjct: 215 RIGDQGIEHLMRMHQLVDLNISNNN-IRVEGAKLVSEMTQLTNLNIRKNIIGDDGAKYIS 273
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
+ +L L+I N +++ K +S + L +L I + + + G ++ +++LT LNL
Sbjct: 274 EMKQLIKLDI-GKNYLSNRGAKYISEMKYLTNLDIRSNNIREEGAEFIGEMKQLTNLNLN 332
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLS-DDGCEKFSK 250
G +T + L L L L++ + +DG + S+
Sbjct: 333 GNYITDEGIKHLCGLYQLVSLSIYNTGIQMEDGAKLLSE 371
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 82/161 (50%), Gaps = 5/161 (3%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDF-NFCIQISDGGLEHLRGLSNLTSLSFRR 115
L S+++ G+ + D G+ HL L L+ N I++ G + + ++ LT+L+ R+
Sbjct: 204 KQLTSLNVGGNRIGDQGIEHLMRMHQLVDLNISNNNIRVE--GAKLVSEMTQLTNLNIRK 261
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
N I G K + + L+KLD+ + + G + + L +L+I+ N I + +
Sbjct: 262 -NIIGDDGAKYISEMKQLIKLDIGKNYLSNRGAKYISEMKYLTNLDIR-SNNIREEGAEF 319
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
+ + L +L ++ + +TD GI +L GL +L L++ +
Sbjct: 320 IGEMKQLTNLNLNGNYITDEGIKHLCGLYQLVSLSIYNTGI 360
>gi|150371726|dbj|BAF65678.1| internalin A [Listeria monocytogenes]
gi|194326151|emb|CAQ77234.1| internalin A [Listeria monocytogenes]
gi|298360180|gb|ADI77669.1| internalin A [Listeria monocytogenes]
gi|298360390|gb|ADI77774.1| internalin A [Listeria monocytogenes]
gi|298360416|gb|ADI77787.1| internalin A [Listeria monocytogenes]
gi|298360620|gb|ADI77889.1| internalin A [Listeria monocytogenes]
gi|298360656|gb|ADI77907.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 107/329 (32%), Positives = 166/329 (50%), Gaps = 39/329 (11%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
L GL L LEL++ Q+ + +S L NL + L F ISD + ++ L+ L+ L
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRL 366
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGA 382
+++D ++SL LT+++ A
Sbjct: 367 FFYNNKVSD-----VSSLANLTNINWLSA 390
>gi|223006802|gb|ACM69358.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 117/358 (32%), Positives = 171/358 (47%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNY 424
>gi|195585785|ref|XP_002082659.1| GD25110 [Drosophila simulans]
gi|194194668|gb|EDX08244.1| GD25110 [Drosophila simulans]
Length = 522
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 89/308 (28%), Positives = 147/308 (47%), Gaps = 51/308 (16%)
Query: 35 DLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGS-DVTDSGLIHLK-DCSNLQSLDFNFCI 92
D+ LG + D + IA +L +++L G ++T++GL+ + L+ L+ C
Sbjct: 249 DMNLGHAFSITDTSLGRIAQHLRNLETLELGGCCNITNTGLLLIAWGLKKLKHLNLRSCW 308
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN-- 150
ISD G+ HL G S T+ G + L L L+ C R+ +
Sbjct: 309 HISDQGIGHLAGFSRETA-----------------EGNLQLEYLGLQDCQRLSDEALGHI 351
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYL-KGLQKLTL 208
+GL L+S+N+ +C +TDS +K L+ + L+ L + SC ++D G+AYL +G +
Sbjct: 352 AQGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGSGINS 411
Query: 209 LNLEGC-PVTAACLDSLS-ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 266
L++ C ++ L ++ L L L+LN+CQ++D G K +
Sbjct: 412 LDVSFCDKISDQALTHIAQGLYRLRSLSLNQCQITDHGMLKIA----------------- 454
Query: 267 ECLVHLKGLTNLESLNLDSCG-IGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLSGL 323
K L LE+LN+ C I D+GL L L NLK ++L TQ+ S G+ + L
Sbjct: 455 ------KALHELENLNIGQCSRITDKGLQTLAEDLTNLKTIDLYGCTQLSSKGIDIIMKL 508
Query: 324 TNLESINL 331
L+ +NL
Sbjct: 509 PKLQKLNL 516
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 96/301 (31%), Positives = 147/301 (48%), Gaps = 41/301 (13%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
RG+ + LS RR+ G+ A L NL G + +N+
Sbjct: 212 RGIKKVQILSLRRSLKDLVLGVPALTSL-------------------NLSGCFNVADMNL 252
Query: 163 KWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLK-GLQKLTLLNLEGCPVTA- 218
ITD+ + ++ L NL++L++ C +T++G+ + GL+KL LNL C +
Sbjct: 253 GHAFSITDTSLGRIAQHLRNLETLELGGCCNITNTGLLLIAWGLKKLKHLNLRSCWHISD 312
Query: 219 ------ACLDSLSALGSL--FYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-NEITDE 267
A +A G+L YL L CQ LSD+ ++ + SLK +NL F +TD
Sbjct: 313 QGIGHLAGFSRETAEGNLQLEYLGLQDCQRLSDEALGHIAQGLTSLKSINLSFCVSVTDS 372
Query: 268 CLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLS-GL 323
L HL + LE LNL SC I D G+ LT G + L++S ++ L H++ GL
Sbjct: 373 GLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGSGINSLDVSFCDKISDQALTHIAQGL 432
Query: 324 TNLESINLSFTGISDGSLRKLA-GLSSLKSLNL-DARQITDTGLAALTS-LTGLTHLDLF 380
L S++L+ I+D + K+A L L++LN+ +ITD GL L LT L +DL+
Sbjct: 433 YRLRSLSLNQCQITDHGMLKIAKALHELENLNIGQCSRITDKGLQTLAEDLTNLKTIDLY 492
Query: 381 G 381
G
Sbjct: 493 G 493
>gi|85679220|gb|ABC72026.1| InlA [Listeria monocytogenes]
Length = 794
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 107/329 (32%), Positives = 166/329 (50%), Gaps = 39/329 (11%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 97 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 150
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 151 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 202
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 203 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 255
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 256 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 309
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
L GL L LEL++ Q+ + +S L NL + L F ISD + ++ L+ L+ L
Sbjct: 310 SPLAGLAALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRL 365
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGA 382
+++D ++SL LT+++ A
Sbjct: 366 FFYNNKVSD-----VSSLANLTNINWLSA 389
>gi|149242641|pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
gi|149242643|pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 106/329 (32%), Positives = 167/329 (50%), Gaps = 39/329 (11%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 63 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 116
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ LN + N +TD +KPL
Sbjct: 117 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLN--FGNQVTD--LKPL 168
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 169 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 221
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 222 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 275
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
L GL L LEL++ Q+ + +S L NL + L F ISD + ++ L+ L+ L
Sbjct: 276 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRL 331
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGA 382
+++D ++SL LT+++ A
Sbjct: 332 FFSNNKVSD-----VSSLANLTNINWLSA 355
>gi|22347552|gb|AAM95921.1| internalin A precursor [Listeria monocytogenes]
Length = 744
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 117/358 (32%), Positives = 171/358 (47%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 42 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 95
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 96 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 147
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 148 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 200
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 201 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 254
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 255 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 312
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 313 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNY 368
>gi|112961610|gb|ABI28426.1| internalin A [Listeria monocytogenes]
gi|112961613|gb|ABI28428.1| internalin A [Listeria monocytogenes]
gi|112961625|gb|ABI28436.1| internalin A [Listeria monocytogenes]
gi|112961628|gb|ABI28438.1| internalin A [Listeria monocytogenes]
gi|112961631|gb|ABI28440.1| internalin A [Listeria monocytogenes]
gi|112961634|gb|ABI28442.1| internalin A [Listeria monocytogenes]
gi|112961670|gb|ABI28466.1| internalin A [Listeria monocytogenes]
gi|112961673|gb|ABI28468.1| internalin A [Listeria monocytogenes]
gi|112961676|gb|ABI28470.1| internalin A [Listeria monocytogenes]
gi|112961688|gb|ABI28478.1| internalin A [Listeria monocytogenes]
gi|112961703|gb|ABI28488.1| internalin A [Listeria monocytogenes]
gi|112961712|gb|ABI28494.1| internalin A [Listeria monocytogenes]
gi|112961715|gb|ABI28496.1| internalin A [Listeria monocytogenes]
gi|112961724|gb|ABI28502.1| internalin A [Listeria monocytogenes]
gi|112961733|gb|ABI28508.1| internalin A [Listeria monocytogenes]
gi|112961736|gb|ABI28510.1| internalin A [Listeria monocytogenes]
gi|112961739|gb|ABI28512.1| internalin A [Listeria monocytogenes]
gi|112961742|gb|ABI28514.1| internalin A [Listeria monocytogenes]
gi|112961745|gb|ABI28516.1| internalin A [Listeria monocytogenes]
gi|112961754|gb|ABI28522.1| internalin A [Listeria monocytogenes]
Length = 751
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 117/358 (32%), Positives = 171/358 (47%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 49 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 102
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 103 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 154
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 155 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 207
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 208 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 261
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 262 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 319
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 320 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNY 375
>gi|56797879|emb|CAH04901.1| internalin A [Listeria monocytogenes]
Length = 483
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 117/358 (32%), Positives = 172/358 (48%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 90 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 143
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 144 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL--SFGNQVTD--LKPL 195
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 196 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 248
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 249 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 302
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 303 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 360
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 361 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNY 416
>gi|85679230|gb|ABC72031.1| InlA [Listeria monocytogenes]
Length = 794
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 107/329 (32%), Positives = 166/329 (50%), Gaps = 39/329 (11%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 97 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 150
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 151 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 202
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 203 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 255
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 256 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 309
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
L GL L LEL++ Q+ + +S L NL + L F ISD + ++ L+ L+ L
Sbjct: 310 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRL 365
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGA 382
+++D ++SL LT+++ A
Sbjct: 366 FFYNNKVSD-----VSSLANLTNINWLSA 389
>gi|322952096|gb|ADX21047.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 117/358 (32%), Positives = 171/358 (47%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNY 424
>gi|313485065|gb|ADR53005.1| InlA [Listeria monocytogenes]
Length = 801
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 117/358 (32%), Positives = 172/358 (48%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNY 424
>gi|126143308|gb|ABN80096.1| InlA [Listeria monocytogenes]
Length = 800
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 107/329 (32%), Positives = 166/329 (50%), Gaps = 39/329 (11%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
L GL L LEL++ Q+ + +S L NL + L F ISD + ++ L+ L+ L
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRL 366
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGA 382
+++D ++SL LT+++ A
Sbjct: 367 FFYNNKVSD-----VSSLANLTNINWLSA 390
>gi|390362171|ref|XP_003730087.1| PREDICTED: F-box/LRR-repeat protein 14-like [Strongylocentrotus
purpuratus]
Length = 478
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 97/299 (32%), Positives = 152/299 (50%), Gaps = 24/299 (8%)
Query: 81 SNLQSLDFNFCIQISDGGLEHL--RGLSNLTSLSFRRNNAITAQGM-KAFAGLINLVKLD 137
N+QSL+ + C ++D GL H + + LT L+ IT + + L L LD
Sbjct: 174 PNIQSLNLSGCYNLTDVGLSHAFSKEIPTLTVLNLSLCKQITDTSLWRIEQYLKQLEVLD 233
Query: 138 LERCTRI--HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT-----NLKSLQI--- 187
L C+ I G LV +GL KL+ LN++ C I+D + L+G++ + L++
Sbjct: 234 LAGCSNITNTGLLVIARGLHKLKGLNLRSCRHISDVGIGYLAGVSVEAARGTRDLELLVL 293
Query: 188 -SCSKVTDSGIAYL-KGLQKLTLLNLEG-CPVTAACLDSLSALGSLFYLNLNRC-QLSDD 243
C K++D+ + + KGL KL LNL C +T + SLS + SL LNL C +SD
Sbjct: 294 QDCQKLSDTALMSIAKGLHKLRSLNLSFCCGITDTGMISLSRMQSLRELNLRSCDNISDI 353
Query: 244 GCEKFSKI-GSLKVLNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGLVNLT-GL 299
G ++ G L+ F ++I D L H+ +G+ NL++++L SC I DEG+ L L
Sbjct: 354 GLAHLAEYGGHFATLDASFCDKIGDAALSHISQGMPNLKNVSLSSCHITDEGVGRLVRSL 413
Query: 300 CNLKCLELSD-TQVGSSGLRHLS-GLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNL 355
N+ L + +V GL ++ L L+ I+L T I+ L ++ L L LNL
Sbjct: 414 HNMTTLNIGQCVRVTDKGLALIAEHLKELKCIDLYGCTMITTVGLERIMQLPCLTVLNL 472
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 79/281 (28%), Positives = 139/281 (49%), Gaps = 51/281 (18%)
Query: 62 VDLSG-SDVTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAI 119
+DL+G S++T++GL+ + + L+ L+ C ISD G+ +L G+S
Sbjct: 232 LDLAGCSNITNTGLLVIARGLHKLKGLNLRSCRHISDVGIGYLAGVS------------- 278
Query: 120 TAQGMKAFAGLINLVKLDLERCTRIH-GGLVNL-KGLMKLESLNIKWCNCITDSDMKPLS 177
++A G +L L L+ C ++ L+++ KGL KL SLN+ +C ITD+ M LS
Sbjct: 279 ----VEAARGTRDLELLVLQDCQKLSDTALMSIAKGLHKLRSLNLSFCCGITDTGMISLS 334
Query: 178 GLTNLKSLQI-SCSKVTDSGIAYLKGL-QKLTLLNLEGC-PVTAACLDSLS-ALGSLFYL 233
+ +L+ L + SC ++D G+A+L L+ C + A L +S + +L +
Sbjct: 335 RMQSLRELNLRSCDNISDIGLAHLAEYGGHFATLDASFCDKIGDAALSHISQGMPNLKNV 394
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEG 292
+L+ C ++D+G +G L ++ L N+ +LN+ C + D+G
Sbjct: 395 SLSSCHITDEG------VGRL-----------------VRSLHNMTTLNIGQCVRVTDKG 431
Query: 293 LVNLT-GLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINL 331
L + L LKC++L T + + GL + L L +NL
Sbjct: 432 LALIAEHLKELKCIDLYGCTMITTVGLERIMQLPCLTVLNL 472
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 82/280 (29%), Positives = 133/280 (47%), Gaps = 49/280 (17%)
Query: 151 LKGLMKLESLNIKWCNCITDSDM-----KPLSGLT--------------------NLKSL 185
++G+ ++SLN+ C +TD + K + LT LK L
Sbjct: 170 MQGMPNIQSLNLSGCYNLTDVGLSHAFSKEIPTLTVLNLSLCKQITDTSLWRIEQYLKQL 229
Query: 186 QI----SCSKVTDSGIAYL-KGLQKLTLLNLEGCP---------VTAACLDSLSALGSLF 231
++ CS +T++G+ + +GL KL LNL C + +++ L
Sbjct: 230 EVLDLAGCSNITNTGLLVIARGLHKLKGLNLRSCRHISDVGIGYLAGVSVEAARGTRDLE 289
Query: 232 YLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-G 287
L L CQ LSD +K + L+ LNL F ITD ++ L + +L LNL SC
Sbjct: 290 LLVLQDCQKLSDTALMSIAKGLHKLRSLNLSFCCGITDTGMISLSRMQSLRELNLRSCDN 349
Query: 288 IGDEGLVNLTGL-CNLKCLELSDT-QVGSSGLRHLS-GLTNLESINLSFTGISD-GSLRK 343
I D GL +L + L+ S ++G + L H+S G+ NL++++LS I+D G R
Sbjct: 350 ISDIGLAHLAEYGGHFATLDASFCDKIGDAALSHISQGMPNLKNVSLSSCHITDEGVGRL 409
Query: 344 LAGLSSLKSLNL-DARQITDTGLAALTS-LTGLTHLDLFG 381
+ L ++ +LN+ ++TD GLA + L L +DL+G
Sbjct: 410 VRSLHNMTTLNIGQCVRVTDKGLALIAEHLKELKCIDLYG 449
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 70/228 (30%), Positives = 107/228 (46%), Gaps = 50/228 (21%)
Query: 176 LSGLTNLKSLQIS-CSKVTDSGI--AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
+ G+ N++SL +S C +TD G+ A+ K + LT+LNL C
Sbjct: 170 MQGMPNIQSLNLSGCYNLTDVGLSHAFSKEIPTLTVLNLSLCK----------------- 212
Query: 233 LNLNRCQLSDDGCEKFSK-IGSLKVLNL-GFNEITDE-CLVHLKGLTNLESLNLDSC-GI 288
Q++D + + + L+VL+L G + IT+ LV +GL L+ LNL SC I
Sbjct: 213 ------QITDTSLWRIEQYLKQLEVLDLAGCSNITNTGLLVIARGLHKLKGLNLRSCRHI 266
Query: 289 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS-FTGISDGSLRKLA-G 346
D G+ L G+ + G +LE + L +SD +L +A G
Sbjct: 267 SDVGIGYLAGV----------------SVEAARGTRDLELLVLQDCQKLSDTALMSIAKG 310
Query: 347 LSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGA-RITDSGAAYL 392
L L+SLNL ITDTG+ +L+ + L L+L I+D G A+L
Sbjct: 311 LHKLRSLNLSFCCGITDTGMISLSRMQSLRELNLRSCDNISDIGLAHL 358
>gi|313485058|gb|ADR53003.1| InlA [Listeria monocytogenes]
Length = 765
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 116/358 (32%), Positives = 171/358 (47%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNY 424
>gi|298359724|gb|ADI77441.1| truncated internalin A [Listeria monocytogenes]
gi|298359728|gb|ADI77443.1| truncated internalin A [Listeria monocytogenes]
gi|298359760|gb|ADI77459.1| truncated internalin A [Listeria monocytogenes]
gi|298359768|gb|ADI77463.1| truncated internalin A [Listeria monocytogenes]
gi|298359778|gb|ADI77468.1| truncated internalin A [Listeria monocytogenes]
gi|298359784|gb|ADI77471.1| truncated internalin A [Listeria monocytogenes]
gi|298359796|gb|ADI77477.1| truncated internalin A [Listeria monocytogenes]
gi|298359800|gb|ADI77479.1| truncated internalin A [Listeria monocytogenes]
gi|298359816|gb|ADI77487.1| truncated internalin A [Listeria monocytogenes]
gi|298359840|gb|ADI77499.1| truncated internalin A [Listeria monocytogenes]
gi|298359850|gb|ADI77504.1| truncated internalin A [Listeria monocytogenes]
gi|298359852|gb|ADI77505.1| truncated internalin A [Listeria monocytogenes]
gi|298359860|gb|ADI77509.1| truncated internalin A [Listeria monocytogenes]
gi|298359916|gb|ADI77537.1| truncated internalin A [Listeria monocytogenes]
gi|298359928|gb|ADI77543.1| truncated internalin A [Listeria monocytogenes]
gi|298359936|gb|ADI77547.1| truncated internalin A [Listeria monocytogenes]
gi|298359962|gb|ADI77560.1| truncated internalin A [Listeria monocytogenes]
gi|298359996|gb|ADI77577.1| truncated internalin A [Listeria monocytogenes]
gi|298360016|gb|ADI77587.1| truncated internalin A [Listeria monocytogenes]
gi|298360018|gb|ADI77588.1| truncated internalin A [Listeria monocytogenes]
gi|298360022|gb|ADI77590.1| truncated internalin A [Listeria monocytogenes]
gi|298360024|gb|ADI77591.1| truncated internalin A [Listeria monocytogenes]
gi|298360046|gb|ADI77602.1| truncated internalin A [Listeria monocytogenes]
gi|298360048|gb|ADI77603.1| truncated internalin A [Listeria monocytogenes]
gi|298360058|gb|ADI77608.1| truncated internalin A [Listeria monocytogenes]
gi|298360062|gb|ADI77610.1| truncated internalin A [Listeria monocytogenes]
gi|298360088|gb|ADI77623.1| truncated internalin A [Listeria monocytogenes]
gi|298360120|gb|ADI77639.1| truncated internalin A [Listeria monocytogenes]
gi|298360152|gb|ADI77655.1| truncated internalin A [Listeria monocytogenes]
gi|298360168|gb|ADI77663.1| truncated internalin A [Listeria monocytogenes]
gi|298360204|gb|ADI77681.1| truncated internalin A [Listeria monocytogenes]
gi|298360210|gb|ADI77684.1| truncated internalin A [Listeria monocytogenes]
gi|298360224|gb|ADI77691.1| truncated internalin A [Listeria monocytogenes]
gi|298360248|gb|ADI77703.1| truncated internalin A [Listeria monocytogenes]
gi|298360250|gb|ADI77704.1| truncated internalin A [Listeria monocytogenes]
gi|298360272|gb|ADI77715.1| truncated internalin A [Listeria monocytogenes]
gi|298360308|gb|ADI77733.1| truncated internalin A [Listeria monocytogenes]
gi|298360340|gb|ADI77749.1| truncated internalin A [Listeria monocytogenes]
gi|298360382|gb|ADI77770.1| truncated internalin A [Listeria monocytogenes]
gi|298360392|gb|ADI77775.1| truncated internalin A [Listeria monocytogenes]
gi|298360408|gb|ADI77783.1| truncated internalin A [Listeria monocytogenes]
gi|298360418|gb|ADI77788.1| truncated internalin A [Listeria monocytogenes]
gi|298360430|gb|ADI77794.1| truncated internalin A [Listeria monocytogenes]
gi|298360438|gb|ADI77798.1| truncated internalin A [Listeria monocytogenes]
gi|298360444|gb|ADI77801.1| truncated internalin A [Listeria monocytogenes]
gi|298360446|gb|ADI77802.1| truncated internalin A [Listeria monocytogenes]
gi|298360476|gb|ADI77817.1| truncated internalin A [Listeria monocytogenes]
gi|298360482|gb|ADI77820.1| truncated internalin A [Listeria monocytogenes]
gi|298360484|gb|ADI77821.1| truncated internalin A [Listeria monocytogenes]
gi|298360486|gb|ADI77822.1| truncated internalin A [Listeria monocytogenes]
gi|298360490|gb|ADI77824.1| truncated internalin A [Listeria monocytogenes]
gi|298360512|gb|ADI77835.1| truncated internalin A [Listeria monocytogenes]
gi|298360526|gb|ADI77842.1| truncated internalin A [Listeria monocytogenes]
gi|298360534|gb|ADI77846.1| truncated internalin A [Listeria monocytogenes]
gi|298360574|gb|ADI77866.1| truncated internalin A [Listeria monocytogenes]
gi|298360584|gb|ADI77871.1| truncated internalin A [Listeria monocytogenes]
gi|298360618|gb|ADI77888.1| truncated internalin A [Listeria monocytogenes]
gi|298360622|gb|ADI77890.1| truncated internalin A [Listeria monocytogenes]
gi|298360626|gb|ADI77892.1| truncated internalin A [Listeria monocytogenes]
gi|298360628|gb|ADI77893.1| truncated internalin A [Listeria monocytogenes]
gi|298360646|gb|ADI77902.1| truncated internalin A [Listeria monocytogenes]
gi|298360650|gb|ADI77904.1| truncated internalin A [Listeria monocytogenes]
gi|298360664|gb|ADI77911.1| truncated internalin A [Listeria monocytogenes]
gi|298360686|gb|ADI77922.1| truncated internalin A [Listeria monocytogenes]
gi|298360702|gb|ADI77930.1| truncated internalin A [Listeria monocytogenes]
gi|298360718|gb|ADI77938.1| truncated internalin A [Listeria monocytogenes]
gi|443428870|gb|AGC92234.1| truncated internalin A [Listeria monocytogenes]
Length = 605
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 116/358 (32%), Positives = 171/358 (47%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQL--SFGNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNY 424
>gi|112959500|gb|ABI27277.1| internalin A [Listeria monocytogenes]
gi|112959502|gb|ABI27278.1| internalin A [Listeria monocytogenes]
gi|112959510|gb|ABI27282.1| internalin A [Listeria monocytogenes]
gi|112959512|gb|ABI27283.1| internalin A [Listeria monocytogenes]
gi|112959524|gb|ABI27289.1| internalin A [Listeria monocytogenes]
gi|112959530|gb|ABI27292.1| internalin A [Listeria monocytogenes]
Length = 737
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 117/358 (32%), Positives = 171/358 (47%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 35 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 88
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 89 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL--SFGNQVTD--LKPL 140
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 141 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 193
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 194 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 247
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 248 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 305
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 306 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNY 361
>gi|219821333|gb|ACL37800.1| internalin A [Listeria monocytogenes]
Length = 739
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 116/358 (32%), Positives = 171/358 (47%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DINPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 252
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 253 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 310
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 311 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVKY 366
>gi|130774813|gb|ABO32419.1| InlA [Listeria monocytogenes]
Length = 800
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 117/358 (32%), Positives = 172/358 (48%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNY 424
>gi|322952083|gb|ADX21041.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 117/358 (32%), Positives = 171/358 (47%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNY 424
>gi|219821357|gb|ACL37816.1| internalin A [Listeria monocytogenes]
Length = 742
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 108/333 (32%), Positives = 169/333 (50%), Gaps = 36/333 (10%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQL--SFGNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESIIATNNQISDITPLGILTNLDEL 198
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 252
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
L GL L LEL++ Q+ + +S L NL + L F ISD + ++ L+ L+ L
Sbjct: 253 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRL 308
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
+++D +++L +LT + L +I+D
Sbjct: 309 FFYNNKVSD--VSSLANLTNINWLSAGHNQISD 339
>gi|219821375|gb|ACL37828.1| internalin A [Listeria monocytogenes]
Length = 739
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 107/329 (32%), Positives = 166/329 (50%), Gaps = 39/329 (11%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 252
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
L GL L LEL++ Q+ + +S L NL + L F ISD + ++ L+ L+ L
Sbjct: 253 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRL 308
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGA 382
+++D ++SL LT+++ A
Sbjct: 309 FFYNNKVSD-----VSSLANLTNINWLSA 332
>gi|149242645|pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 116/358 (32%), Positives = 173/358 (48%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 63 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 116
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ LN + N +TD +KPL
Sbjct: 117 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLN--FGNQVTD--LKPL 168
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 169 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 221
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 222 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 275
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 276 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 333
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 334 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNY 389
>gi|422808574|ref|ZP_16856985.1| Internalin A [Listeria monocytogenes FSL J1-208]
gi|378752188|gb|EHY62773.1| Internalin A [Listeria monocytogenes FSL J1-208]
Length = 802
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 107/329 (32%), Positives = 166/329 (50%), Gaps = 39/329 (11%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
L GL L LEL++ Q+ + +S L NL + L F ISD + ++ L+ L+ L
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRL 366
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGA 382
+++D ++SL LT+++ A
Sbjct: 367 FFYNNKVSD-----VSSLANLTNINWLSA 390
>gi|290980538|ref|XP_002672989.1| predicted protein [Naegleria gruberi]
gi|284086569|gb|EFC40245.1| predicted protein [Naegleria gruberi]
Length = 315
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 106/204 (51%), Gaps = 2/204 (0%)
Query: 160 LNIKWCNCITDSDMKP--LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
+N+K+ + + DS + +S + L SL I +++ D G Y+ +++LT LN+ G +
Sbjct: 107 VNVKFSSWLLDSFERAEFISEMKQLTSLNIYNNRIGDVGAKYINEMKQLTSLNIGGNRIG 166
Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 277
+S + L L+ ++ D+G + S++ L L++G N+I DE + G+
Sbjct: 167 IKGAKLISEMKQLTSLHTYNNRIGDEGAKYISEMKQLTSLDIGGNQIGDEGAKLISGMKR 226
Query: 278 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 337
L SL++ + IGDEG ++G+ L L + ++G G + +SG+ L S+ + I
Sbjct: 227 LTSLHIYNNRIGDEGAKLISGMKQLTSLNIGVNEIGDEGAKLISGMKRLTSLQIYNNRIG 286
Query: 338 DGSLRKLAGLSSLKSLNLDARQIT 361
D + ++ + L SLN+ ++
Sbjct: 287 DEGAKYISEMKQLTSLNIGGNELV 310
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 87/169 (51%)
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
+S + L LN+ ++ D G + +++ L LN+G N I + + + L SL+
Sbjct: 125 ISEMKQLTSLNIYNNRIGDVGAKYINEMKQLTSLNIGGNRIGIKGAKLISEMKQLTSLHT 184
Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
+ IGDEG ++ + L L++ Q+G G + +SG+ L S+++ I D +
Sbjct: 185 YNNRIGDEGAKYISEMKQLTSLDIGGNQIGDEGAKLISGMKRLTSLHIYNNRIGDEGAKL 244
Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
++G+ L SLN+ +I D G ++ + LT L ++ RI D GA Y+
Sbjct: 245 ISGMKQLTSLNIGVNEIGDEGAKLISGMKRLTSLQIYNNRIGDEGAKYI 293
>gi|112959444|gb|ABI27249.1| truncated internalin A [Listeria monocytogenes]
gi|112959490|gb|ABI27272.1| truncated internalin A [Listeria monocytogenes]
Length = 542
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 116/358 (32%), Positives = 171/358 (47%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 35 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 88
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 89 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQL--SFGNQVTD--LKPL 140
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 141 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 193
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 194 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTGLKLGANQISN--I 247
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 248 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 305
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 306 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNY 361
>gi|85679236|gb|ABC72034.1| InlA [Listeria monocytogenes]
Length = 794
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 107/329 (32%), Positives = 166/329 (50%), Gaps = 39/329 (11%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 97 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 150
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 151 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 202
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 203 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 255
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 256 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 309
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
L GL L LEL++ Q+ + +S L NL + L F ISD + ++ L+ L+ L
Sbjct: 310 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRL 365
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGA 382
+++D ++SL LT+++ A
Sbjct: 366 FFYNNKVSD-----VSSLANLTNINWLSA 389
>gi|283779449|ref|YP_003370204.1| hypothetical protein Psta_1669 [Pirellula staleyi DSM 6068]
gi|283437902|gb|ADB16344.1| hypothetical protein Psta_1669 [Pirellula staleyi DSM 6068]
Length = 633
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/139 (38%), Positives = 73/139 (52%)
Query: 257 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 316
L+LG +TD+ L L L+ L+L + D GL L L L L L T + S+
Sbjct: 478 LSLGRTTVTDQGLAQLGQFKRLKWLDLSLTKVTDTGLEQLDQLTQLNQLFLEGTAISSAS 537
Query: 317 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 376
+ ++ L NLE ++LS I+D L K+A L LK L L +TD GLA L SL L
Sbjct: 538 IPAIARLRNLEELDLSKVNIADDDLAKIATLKQLKVLYLVGTPVTDAGLAKLVSLQNLEM 597
Query: 377 LDLFGARITDSGAAYLRSK 395
LDL G R++ A L+S+
Sbjct: 598 LDLRGTRVSADAAEKLKSR 616
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 66/118 (55%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
+TD + L LK L +S +KVTD+G+ L L +L L LEG +++A + +++
Sbjct: 483 TTVTDQGLAQLGQFKRLKWLDLSLTKVTDTGLEQLDQLTQLNQLFLEGTAISSASIPAIA 542
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
L +L L+L++ ++DD K + + LKVL L +TD L L L NLE L+L
Sbjct: 543 RLRNLEELDLSKVNIADDDLAKIATLKQLKVLYLVGTPVTDAGLAKLVSLQNLEMLDL 600
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 81/168 (48%), Gaps = 27/168 (16%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++ +++ L + VTD GL L L+ LD + +++D GLE L L+ L L F
Sbjct: 473 ATTINLSLGRTTVTDQGLAQLGQFKRLKWLDLSLT-KVTDTGLEQLDQLTQLNQL-FLEG 530
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
AI++ + A A L NL +LDL + VN I D D+ +
Sbjct: 531 TAISSASIPAIARLRNLEELDLSK--------VN-----------------IADDDLAKI 565
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
+ L LK L + + VTD+G+A L LQ L +L+L G V+A + L
Sbjct: 566 ATLKQLKVLYLVGTPVTDAGLAKLVSLQNLEMLDLRGTRVSADAAEKL 613
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 70/145 (48%), Gaps = 2/145 (1%)
Query: 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 268
L+L VT L L L +L+L+ +++D G E+ ++ L L L I+
Sbjct: 478 LSLGRTTVTDQGLAQLGQFKRLKWLDLSLTKVTDTGLEQLDQLTQLNQLFLEGTAISSAS 537
Query: 269 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 328
+ + L NLE L+L I D+ L + L LK L L T V +GL L L NLE
Sbjct: 538 IPAIARLRNLEELDLSKVNIADDDLAKIATLKQLKVLYLVGTPVTDAGLAKLVSLQNLEM 597
Query: 329 INLSFTGISDGSLRKLAGLSSLKSL 353
++L T +S + KL S +KSL
Sbjct: 598 LDLRGTRVSADAAEKLK--SRIKSL 620
>gi|357615345|gb|EHJ69606.1| hypothetical protein KGM_07261 [Danaus plexippus]
Length = 438
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 102/301 (33%), Positives = 150/301 (49%), Gaps = 29/301 (9%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMK-AFAGLINLVKLDLERCTRIHGGLVN---LKGLMKLE 158
RG+ L LS RR G++ A A L L L L C + + L L+
Sbjct: 116 RGVRRLQVLSLRR-------GLRDAVAALPGLESLSLSGCYSVTDAALASAFATELPALK 168
Query: 159 SLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLK-GLQKLTLLNLEGC- 214
L++ C +TDS + ++ L NL+ L++ C VTD+G+ + GL+KL LNL C
Sbjct: 169 RLDLSLCKQVTDSSLGRIAQSLKNLEELELGGCCNVTDTGLLLIAWGLRKLRRLNLRSCW 228
Query: 215 PVTAACLDSLSALGS------LFYLNLNRCQLSDDGCEKFSKIG--SLKVLNLGF-NEIT 265
V + L G L +L L CQ D K + G LK +NL F +T
Sbjct: 229 HVNDDGIAHLCGGGEARGTPELEHLGLQDCQRLTDEALKHAATGLPKLKSINLSFCVAVT 288
Query: 266 DECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLS-G 322
D L HL L +LE +NL +C G+ D G+ +L L+ L++S +VG L H + G
Sbjct: 289 DAGLRHLARLPHLEDVNLRACDGVSDAGVAHLAESGRLRALDVSFCDKVGDEALSHATLG 348
Query: 323 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAAL-TSLTGLTHLDLF 380
L+ L ++LS ++D L ++A LS L++LN+ Q+TD GL AL L L +DL+
Sbjct: 349 LSGLRCLSLSACRLTDEGLERVARLSQLETLNIGQCTQVTDRGLRALGEGLKNLKAIDLY 408
Query: 381 G 381
G
Sbjct: 409 G 409
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 84/290 (28%), Positives = 144/290 (49%), Gaps = 37/290 (12%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGS-DVTDSGLIHLK-DCSNLQSLDFN 89
AL+ L L V D + IA +L ++L G +VTD+GL+ + L+ L+
Sbjct: 166 ALKRLDLSLCKQVTDSSLGRIAQSLKNLEELELGGCCNVTDTGLLLIAWGLRKLRRLNLR 225
Query: 90 FCIQISDGGLEHL------RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTR 143
C ++D G+ HL RG L L + +T + +K A
Sbjct: 226 SCWHVNDDGIAHLCGGGEARGTPELEHLGLQDCQRLTDEALKHAA--------------- 270
Query: 144 IHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKG 202
GL KL+S+N+ +C +TD+ ++ L+ L +L+ + + +C V+D+G+A+L
Sbjct: 271 --------TGLPKLKSINLSFCVAVTDAGLRHLARLPHLEDVNLRACDGVSDAGVAHLAE 322
Query: 203 LQKLTLLNLEGCPVTAACLDSLSALG--SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG 260
+L L++ C S + LG L L+L+ C+L+D+G E+ +++ L+ LN+G
Sbjct: 323 SGRLRALDVSFCDKVGDEALSHATLGLSGLRCLSLSACRLTDEGLERVARLSQLETLNIG 382
Query: 261 F-NEITDECLVHL-KGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLEL 307
++TD L L +GL NL++++L C I EGL ++ L L L L
Sbjct: 383 QCTQVTDRGLRALGEGLKNLKAIDLYGCTCITHEGLDHIVKLPRLSVLNL 432
>gi|313485044|gb|ADR52997.1| InlA [Listeria monocytogenes]
Length = 771
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 116/358 (32%), Positives = 171/358 (47%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNY 424
>gi|290972682|ref|XP_002669080.1| predicted protein [Naegleria gruberi]
gi|284082622|gb|EFC36336.1| predicted protein [Naegleria gruberi]
Length = 434
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 95/356 (26%), Positives = 163/356 (45%), Gaps = 27/356 (7%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
++LSG++++ + + + S L L I + G+ + LS LT L+ N IT+
Sbjct: 74 LELSGNEISKNSMKFISQLSELTKLSVGLN-SIENEGINSIINLSKLTCLNIINAN-ITS 131
Query: 122 QGMKAFAGLINLVKLDLE------RCTRIHGGLVNLK------------GLMKLESLN-- 161
+G+K L NL LD+ + G L NLK G + +N
Sbjct: 132 EGVKLIGKLSNLTILDISGNLIGAEGGQYIGELNNLKILVASDNELGVFGAKSIGEMNQL 191
Query: 162 IKWC---NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
C N I + K +S LT L L + +++ + G L L+KLT NL+
Sbjct: 192 TSLCLIGNSIGNEGAKYISQLTQLTDLDLGRNEIGNEGFKLLTKLEKLT--NLDMVSNNI 249
Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 278
+ L S+ LG L L++ + ++ D G ++G L L L N IT E L + L
Sbjct: 250 SDLSSIGQLGLLNCLDVRKNKIEDTGIRNICQLGGLNALRLCGNPITSEGAKILSEMVQL 309
Query: 279 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
+L++ I DEG + L LK L++S ++ ++G++ + L+ L S+++++ I D
Sbjct: 310 TNLSISETHIDDEGAKFIAQLTTLKYLDISTKRITANGVKFICQLSKLISLDINWNNIGD 369
Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRS 394
+ ++ + L++LN I G L+ + LT LD+ RI G L +
Sbjct: 370 EGVLYISRMQQLETLNAVYCNIGLEGAKLLSEMEQLTVLDVKIKRIPGEGIQLLEN 425
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 104/216 (48%)
Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
S++ S L L L ++ +++ D + + L+ LTLL L G ++ + +S L L
Sbjct: 36 SEIDKFSRLDQLTELNVNWNRLKDEDVKSIGNLKNLTLLELSGNEISKNSMKFISQLSEL 95
Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
L++ + ++G + L LN+ IT E + + L+NL L++ IG
Sbjct: 96 TKLSVGLNSIENEGINSIINLSKLTCLNIINANITSEGVKLIGKLSNLTILDISGNLIGA 155
Query: 291 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 350
EG + L NLK L SD ++G G + + + L S+ L I + + ++ L+ L
Sbjct: 156 EGGQYIGELNNLKILVASDNELGVFGAKSIGEMNQLTSLCLIGNSIGNEGAKYISQLTQL 215
Query: 351 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
L+L +I + G LT L LT+LD+ I+D
Sbjct: 216 TDLDLGRNEIGNEGFKLLTKLEKLTNLDMVSNNISD 251
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 79/297 (26%), Positives = 147/297 (49%), Gaps = 5/297 (1%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
S+L +D+SG+ + G ++ + +NL+ L + ++ G + + ++ LTSL
Sbjct: 141 SNLTILDISGNLIGAEGGQYIGELNNLKILVASDN-ELGVFGAKSIGEMNQLTSLCLI-G 198
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N+I +G K + L L LDL R + G L L KL +L++ N SD+ +
Sbjct: 199 NSIGNEGAKYISQLTQLTDLDLGRNEIGNEGFKLLTKLEKLTNLDMVSNNI---SDLSSI 255
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
L L L + +K+ D+GI + L L L L G P+T+ LS + L L+++
Sbjct: 256 GQLGLLNCLDVRKNKIEDTGIRNICQLGGLNALRLCGNPITSEGAKILSEMVQLTNLSIS 315
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
+ D+G + +++ +LK L++ IT + + L+ L SL+++ IGDEG++ +
Sbjct: 316 ETHIDDEGAKFIAQLTTLKYLDISTKRITANGVKFICQLSKLISLDINWNNIGDEGVLYI 375
Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
+ + L+ L +G G + LS + L +++ I ++ L ++ KSL
Sbjct: 376 SRMQQLETLNAVYCNIGLEGAKLLSEMEQLTVLDVKIKRIPGEGIQLLENIARFKSL 432
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 103/214 (48%), Gaps = 5/214 (2%)
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
+ NL L I +K+++ L G++ L +L G + D S L L LN+N
Sbjct: 1 MKNLTYLNIDWNKISEKSKIILSGMKHLKILAASGSEI-----DKFSRLDQLTELNVNWN 55
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
+L D+ + + +L +L L NEI+ + + L+ L L++ I +EG+ ++
Sbjct: 56 RLKDEDVKSIGNLKNLTLLELSGNEISKNSMKFISQLSELTKLSVGLNSIENEGINSIIN 115
Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
L L CL + + + S G++ + L+NL +++S I + + L++LK L
Sbjct: 116 LSKLTCLNIINANITSEGVKLIGKLSNLTILDISGNLIGAEGGQYIGELNNLKILVASDN 175
Query: 359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
++ G ++ + LT L L G I + GA Y+
Sbjct: 176 ELGVFGAKSIGEMNQLTSLCLIGNSIGNEGAKYI 209
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 68/236 (28%), Positives = 114/236 (48%), Gaps = 6/236 (2%)
Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
L LNI W N I++ LSG+ +LK L S S+ I L +LT LN+ +
Sbjct: 4 LTYLNIDW-NKISEKSKIILSGMKHLKILAASGSE-----IDKFSRLDQLTELNVNWNRL 57
Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 276
+ S+ L +L L L+ ++S + + S++ L L++G N I +E + + L+
Sbjct: 58 KDEDVKSIGNLKNLTLLELSGNEISKNSMKFISQLSELTKLSVGLNSIENEGINSIINLS 117
Query: 277 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 336
L LN+ + I EG+ + L NL L++S +G+ G +++ L NL+ + S +
Sbjct: 118 KLTCLNIINANITSEGVKLIGKLSNLTILDISGNLIGAEGGQYIGELNNLKILVASDNEL 177
Query: 337 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
+ + ++ L SL L I + G ++ LT LT LDL I + G L
Sbjct: 178 GVFGAKSIGEMNQLTSLCLIGNSIGNEGAKYISQLTQLTDLDLGRNEIGNEGFKLL 233
>gi|219821318|gb|ACL37790.1| internalin A [Listeria monocytogenes]
Length = 742
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 107/329 (32%), Positives = 166/329 (50%), Gaps = 39/329 (11%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQL--SFGNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 252
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
L GL L LEL++ Q+ + +S L NL + L F ISD + ++ L+ L+ L
Sbjct: 253 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRL 308
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGA 382
+++D ++SL LT+++ A
Sbjct: 309 FFYNNKVSD-----VSSLANLTNINWLSA 332
>gi|112961667|gb|ABI28464.1| truncated internalin A [Listeria monocytogenes]
Length = 556
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 116/358 (32%), Positives = 171/358 (47%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 49 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 102
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 103 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQL--SFGNQVTD--LKPL 154
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 155 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 207
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 208 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTGLKLGANQISN--I 261
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 262 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 319
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 320 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNY 375
>gi|322952088|gb|ADX21043.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 116/358 (32%), Positives = 171/358 (47%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNY 424
>gi|322952090|gb|ADX21044.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 116/358 (32%), Positives = 171/358 (47%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNY 424
>gi|219821279|gb|ACL37764.1| internalin A [Listeria monocytogenes]
Length = 739
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 107/329 (32%), Positives = 166/329 (50%), Gaps = 39/329 (11%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL--SFGNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 252
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
L GL L LEL++ Q+ + +S L NL + L F ISD + ++ L+ L+ L
Sbjct: 253 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRL 308
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGA 382
+++D ++SL LT+++ A
Sbjct: 309 FFYNNKVSD-----VSSLANLTNINWLSA 332
>gi|313485079|gb|ADR53010.1| InlA [Listeria monocytogenes]
Length = 800
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 116/358 (32%), Positives = 171/358 (47%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNY 424
>gi|313485054|gb|ADR53001.1| InlA [Listeria monocytogenes]
Length = 771
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 116/358 (32%), Positives = 171/358 (47%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNY 424
>gi|298359764|gb|ADI77461.1| truncated internalin A [Listeria monocytogenes]
gi|298359862|gb|ADI77510.1| truncated internalin A [Listeria monocytogenes]
gi|298360070|gb|ADI77614.1| truncated internalin A [Listeria monocytogenes]
gi|298360108|gb|ADI77633.1| truncated internalin A [Listeria monocytogenes]
gi|298360174|gb|ADI77666.1| truncated internalin A [Listeria monocytogenes]
gi|298360196|gb|ADI77677.1| truncated internalin A [Listeria monocytogenes]
gi|298360268|gb|ADI77713.1| truncated internalin A [Listeria monocytogenes]
gi|298360290|gb|ADI77724.1| truncated internalin A [Listeria monocytogenes]
gi|298360536|gb|ADI77847.1| truncated internalin A [Listeria monocytogenes]
gi|298360608|gb|ADI77883.1| truncated internalin A [Listeria monocytogenes]
gi|298360658|gb|ADI77908.1| truncated internalin A [Listeria monocytogenes]
gi|298360684|gb|ADI77921.1| truncated internalin A [Listeria monocytogenes]
Length = 605
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 116/358 (32%), Positives = 171/358 (47%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQL--SFGNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTGLKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNY 424
>gi|219821351|gb|ACL37812.1| internalin A [Listeria monocytogenes]
Length = 742
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 116/358 (32%), Positives = 171/358 (47%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 252
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 253 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 310
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 311 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVKY 366
>gi|168030611|ref|XP_001767816.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162680898|gb|EDQ67330.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 628
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 123/440 (27%), Positives = 194/440 (44%), Gaps = 73/440 (16%)
Query: 18 RCLTEVSLEAFRDC-ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIH 76
R +T+ L + C L+ L L G+ D + +A L +DLS ++V+D GL
Sbjct: 145 RDVTDSGLSSLSRCKGLRILGLKYCSGLGDFGIQNVAIGCQRLYIIDLSFTEVSDKGLAS 204
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLR-GLSNLTSLSFRRNNAITAQGMKAFAG-LINLV 134
L +L+ L CI ++D GL LR G +L L+ + +++QG+ G + L
Sbjct: 205 LALLKHLECLSLISCINVTDKGLSCLRNGCKSLQKLNVAKCLNVSSQGIIELTGSSVQLQ 264
Query: 135 KLDLERCTRIHGGL-VNLKGLMKLESLNIKWCNCITDSDMKPL-SGLTNLKSLQIS-CSK 191
+L+L C I L + + L L+ + + C I DS++ + SG LK L +S C
Sbjct: 265 ELNLSYCKLISNVLFASFQKLKTLQVVKLDGC-VIGDSNLSLIGSGCIELKELSLSKCQG 323
Query: 192 VTDSGIAYL----KGLQKLTL-----------------------LNLEGCPVTAACLDSL 224
VTD+G+ + GLQKL L L +E C + A + L
Sbjct: 324 VTDAGVVGVVTSCTGLQKLDLTCCRDITDTALKAVATSCTGLLSLRMENCLLVTA--EGL 381
Query: 225 SALG-SLFY---LNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKG-LTNL 278
+G S Y L+L C L+D+G + + L++L +G+ +IT L + TNL
Sbjct: 382 IMIGKSCVYLEELDLTDCNLNDNGLKSIGRCRGLRLLKVGYCMDITYAGLASIGATCTNL 441
Query: 279 ESLN-LDSCGIGDEGLVNLTGLCN-LKCLELSD----TQVGSSGLRHLSGLTNLE----- 327
L+ S GI DEG+ + C LK + LS T L LS L LE
Sbjct: 442 RELDCYRSVGISDEGVAAIASGCKRLKVVNLSYCSSITDASLHSLALLSDLVQLELRACS 501
Query: 328 ---SINLSFTGISDGSLRKL-----------------AGLSSLKSLNLDARQITDTGLAA 367
S +S+ G S LR+L G +L+ +NL +TD G+ A
Sbjct: 502 QITSAGISYIGASCKHLRELDVKRCKFVGDHGVLALSRGCRNLRQVNLSYTAVTDAGMMA 561
Query: 368 LTSLTGLTHLDLFGARITDS 387
+ +++ + + L +T S
Sbjct: 562 IANMSCIQDMKLVHVNVTSS 581
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 96/351 (27%), Positives = 157/351 (44%), Gaps = 88/351 (25%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
L+ ++ LD + C++++D + L ++ TS AI +G AG +LV+
Sbjct: 53 LRRYPQIECLDLSSCVEVTD---QCLAAVAKFTSSRLISIKAIRTKGF-TIAGFRSLVEC 108
Query: 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDS 195
L+ +++ +C + D+++ LS L +L+ L++ SC VTDS
Sbjct: 109 RF------------------LQDVDVTFCTQVGDAEVIALSELRHLQKLKLDSCRDVTDS 150
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G++ L + L +L L+ C S LG N+ GC++ L
Sbjct: 151 GLSSLSRCKGLRILGLKYC----------SGLGDFGIQNVA------IGCQR------LY 188
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCN-------LKCLEL 307
+++L F E++D+ L L L +LE L+L SC + D+GL L C KCL +
Sbjct: 189 IIDLSFTEVSDKGLASLALLKHLECLSLISCINVTDKGLSCLRNGCKSLQKLNVAKCLNV 248
Query: 308 SDTQVGSSGLRHLSGLT-NLESINLSF----TGISDGSLRKL------------------ 344
S S G+ L+G + L+ +NLS+ + + S +KL
Sbjct: 249 S-----SQGIIELTGSSVQLQELNLSYCKLISNVLFASFQKLKTLQVVKLDGCVIGDSNL 303
Query: 345 ----AGLSSLKSLNLDARQ-ITDTGLA-ALTSLTGLTHLDLFGAR-ITDSG 388
+G LK L+L Q +TD G+ +TS TGL LDL R ITD+
Sbjct: 304 SLIGSGCIELKELSLSKCQGVTDAGVVGVVTSCTGLQKLDLTCCRDITDTA 354
>gi|320169763|gb|EFW46662.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 684
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 83/278 (29%), Positives = 126/278 (45%), Gaps = 9/278 (3%)
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL--ERCTRIHGGLVNLKGLMKLES 159
GL+ L SL F NN IT+ + AF+GL L +L L T I GL L
Sbjct: 53 FSGLTALNSL-FLSNNPITSIAVNAFSGLTALTQLSLAGNPLTTIPDN--TFTGLTALTR 109
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
L++ + I +GL L+ L ++ +++T+ GL LT L+L +T+
Sbjct: 110 LDV-YVTQIASISASAFAGLPVLEVLSLNDNQITNIASNTFTGLTALTRLSLFNNNITSI 168
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+ + L +L YL+L Q++ F + L L+L NEIT GLT L
Sbjct: 169 PASAFADLSALTYLDLAGNQMTSLSANAFIGLTELTYLSLTSNEITSISPAAFTGLTALT 228
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L++ I + GL +L L + + Q+ S +GL +L ++L ++
Sbjct: 229 ELVLENNLIASISANDFAGLTSLNLLRMRNNQITSLSANGFAGLPSLTELDLDLNLMTSI 288
Query: 340 SLRKLAGLSSLKSLNLDARQITD---TGLAALTSLTGL 374
AGL+SL L++ QIT G A L SLT L
Sbjct: 289 DASAFAGLTSLNLLSVQNNQITSISANGFAGLPSLTAL 326
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 70/234 (29%), Positives = 109/234 (46%), Gaps = 13/234 (5%)
Query: 57 SSLLSVDLSGSDVTD---SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+L +DL+G+ +T + I L + + L SL N IS L L+ L
Sbjct: 177 SALTYLDLAGNQMTSLSANAFIGLTELTYL-SLTSNEITSISPAAFTGLTALTELV---- 231
Query: 114 RRNNAITAQGMKAFAGL--INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDS 171
NN I + FAGL +NL+++ + T + GL L L++ N +T
Sbjct: 232 LENNLIASISANDFAGLTSLNLLRMRNNQITSLSAN--GFAGLPSLTELDLD-LNLMTSI 288
Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
D +GLT+L L + +++T GL LT L LE +T+ ++ + L SL
Sbjct: 289 DASAFAGLTSLNLLSVQNNQITSISANGFAGLPSLTALGLESNQITSISANAFAGLTSLN 348
Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
+L L Q++ F+ + SL VL+L FN+IT GLT + L L+S
Sbjct: 349 FLRLEGNQITSISANAFAAVTSLSVLSLHFNQITSFSANAFTGLTTMMYLLLNS 402
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 101/363 (27%), Positives = 149/363 (41%), Gaps = 14/363 (3%)
Query: 20 LTEVSLEAFRD-CALQDLCLGQYPGVNDKWMDVIASQG-SSLLSVDLSGSDVTDSGLIHL 77
T V+ AF AL L L P + + V A G ++L + L+G+ +T
Sbjct: 45 FTSVAANAFSGLTALNSLFLSNNPITS---IAVNAFSGLTALTQLSLAGNPLTTIPDNTF 101
Query: 78 KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLD 137
+ L LD + QI+ GL L LS +N IT F GL L +L
Sbjct: 102 TGLTALTRLDV-YVTQIASISASAFAGLPVLEVLSLN-DNQITNIASNTFTGLTALTRLS 159
Query: 138 L--ERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 194
L T I +L L L+ N +T GLT L L ++ +++T
Sbjct: 160 LFNNNITSIPASAFADLSALTYLD----LAGNQMTSLSANAFIGLTELTYLSLTSNEITS 215
Query: 195 SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL 254
A GL LT L LE + + + + L SL L + Q++ F+ + SL
Sbjct: 216 ISPAAFTGLTALTELVLENNLIASISANDFAGLTSLNLLRMRNNQITSLSANGFAGLPSL 275
Query: 255 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 314
L+L N +T GLT+L L++ + I GL +L L L Q+ S
Sbjct: 276 TELDLDLNLMTSIDASAFAGLTSLNLLSVQNNQITSISANGFAGLPSLTALGLESNQITS 335
Query: 315 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 374
+GLT+L + L I+ S A ++SL L+L QIT A T LT +
Sbjct: 336 ISANAFAGLTSLNFLRLEGNQITSISANAFAAVTSLSVLSLHFNQITSFSANAFTGLTTM 395
Query: 375 THL 377
+L
Sbjct: 396 MYL 398
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 70/238 (29%), Positives = 101/238 (42%), Gaps = 24/238 (10%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
N T SGLT L SL +S + +T + GL LT L+L G P+T ++ +
Sbjct: 43 NLFTSVAANAFSGLTALNSLFLSNNPITSIAVNAFSGLTALTQLSLAGNPLTTIPDNTFT 102
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
L +L L++ Q++ F+ + L+VL+L N+IT+ GLT L L+L +
Sbjct: 103 GLTALTRLDVYVTQIASISASAFAGLPVLEVLSLNDNQITNIASNTFTGLTALTRLSLFN 162
Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS-----------FT 334
I L L L+L+ Q+ S GLT L ++L+ FT
Sbjct: 163 NNITSIPASAFADLSALTYLDLAGNQMTSLSANAFIGLTELTYLSLTSNEITSISPAAFT 222
Query: 335 G-------------ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
G I+ S AGL+SL L + QIT L LT LDL
Sbjct: 223 GLTALTELVLENNLIASISANDFAGLTSLNLLRMRNNQITSLSANGFAGLPSLTELDL 280
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 78/177 (44%), Gaps = 4/177 (2%)
Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 275
V A L+AL SLF L+ ++ FS + +L L+L N +T GL
Sbjct: 48 VAANAFSGLTALNSLF---LSNNPITSIAVNAFSGLTALTQLSLAGNPLTTIPDNTFTGL 104
Query: 276 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 335
T L L++ I GL L+ L L+D Q+ + +GLT L ++L
Sbjct: 105 TALTRLDVYVTQIASISASAFAGLPVLEVLSLNDNQITNIASNTFTGLTALTRLSLFNNN 164
Query: 336 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD-SGAAY 391
I+ A LS+L L+L Q+T A LT LT+L L IT S AA+
Sbjct: 165 ITSIPASAFADLSALTYLDLAGNQMTSLSANAFIGLTELTYLSLTSNEITSISPAAF 221
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 60/134 (44%)
Query: 257 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 316
L L N T GLT L SL L + I + +GL L L L+ + +
Sbjct: 38 LRLHLNLFTSVAANAFSGLTALNSLFLSNNPITSIAVNAFSGLTALTQLSLAGNPLTTIP 97
Query: 317 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 376
+GLT L +++ T I+ S AGL L+ L+L+ QIT+ T LT LT
Sbjct: 98 DNTFTGLTALTRLDVYVTQIASISASAFAGLPVLEVLSLNDNQITNIASNTFTGLTALTR 157
Query: 377 LDLFGARITDSGAA 390
L LF IT A+
Sbjct: 158 LSLFNNNITSIPAS 171
>gi|334117577|ref|ZP_08491668.1| leucine-rich repeat-containing protein [Microcoleus vaginatus
FGP-2]
gi|333460686|gb|EGK89294.1| leucine-rich repeat-containing protein [Microcoleus vaginatus
FGP-2]
Length = 348
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 80/228 (35%), Positives = 116/228 (50%), Gaps = 34/228 (14%)
Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
D+KPL+ LTNL L + +++ D I L L LT L+L P+ + L++L +L
Sbjct: 91 DIKPLASLTNLTWLFLGSNQIGD--IKPLASLTNLTRLSLSENPI--GDIKPLASLTNLT 146
Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
+L+L+ Q+ D + + + +L +L L N+I D + L LTNL L L IGD
Sbjct: 147 FLDLSDNQIGD--IKPLASLTNLTILFLSDNQIGD--IKPLASLTNLTFLFLSDNKIGD- 201
Query: 292 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD------------- 338
+ L L NL L+LSD Q+G ++ L+ LTNL S++LS I D
Sbjct: 202 -IKPLASLTNLTFLDLSDNQIGD--IKPLASLTNLSSLDLSDNRIGDIKPLASLTNLTRL 258
Query: 339 -------GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
G ++ LA L++L LNLD I D + L SLT L LDL
Sbjct: 259 NLLDNQIGDIKPLASLTNLTRLNLDGNVIGD--IKPLASLTNLRSLDL 304
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 87/269 (32%), Positives = 136/269 (50%), Gaps = 20/269 (7%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
L+ D+ D+ + +K ++L +L + F G ++ L L+NLT LS N
Sbjct: 79 LTKLDLFDNQIGDIKPLASLTNLTWLFLGSNQIGDIKPLASLTNLTRLSLSEN---PIGD 135
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
+K A L NL LDL + ++K L L +L I + + D+KPL+ LTNL
Sbjct: 136 IKPLASLTNLTFLDLS-----DNQIGDIKPLASLTNLTILFLSDNQIGDIKPLASLTNLT 190
Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
L +S +K+ D I L L LT L+L + + L++L +L L+L+ ++ D
Sbjct: 191 FLFLSDNKIGD--IKPLASLTNLTFLDLSDNQI--GDIKPLASLTNLSSLDLSDNRIGD- 245
Query: 244 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 303
+ + + +L LNL N+I D + L LTNL LNLD IGD + L L NL+
Sbjct: 246 -IKPLASLTNLTRLNLLDNQIGD--IKPLASLTNLTRLNLDGNVIGD--IKPLASLTNLR 300
Query: 304 CLELSDTQVGSSGLRHLSGLTNLESINLS 332
L+LS +G ++ L+ LT L ++LS
Sbjct: 301 SLDLSRNVIGD--IKPLASLTKLTVLHLS 327
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 62/160 (38%), Positives = 85/160 (53%), Gaps = 12/160 (7%)
Query: 227 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 286
L SL L+L Q+ D + + + +L L LG N+I D + L LTNL L+L
Sbjct: 76 LSSLTKLDLFDNQIGD--IKPLASLTNLTWLFLGSNQIGD--IKPLASLTNLTRLSLSEN 131
Query: 287 GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG 346
IGD + L L NL L+LSD Q+G ++ L+ LTNL + LS I G ++ LA
Sbjct: 132 PIGD--IKPLASLTNLTFLDLSDNQIGD--IKPLASLTNLTILFLSDNQI--GDIKPLAS 185
Query: 347 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
L++L L L +I D + L SLT LT LDL +I D
Sbjct: 186 LTNLTFLFLSDNKIGD--IKPLASLTNLTFLDLSDNQIGD 223
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/140 (39%), Positives = 73/140 (52%), Gaps = 16/140 (11%)
Query: 250 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 309
K+ SL L+L N+I D + L LTNL L L S IGD + L L NL L LS+
Sbjct: 75 KLSSLTKLDLFDNQIGD--IKPLASLTNLTWLFLGSNQIGD--IKPLASLTNLTRLSLSE 130
Query: 310 TQVGSSGLRHLSGLTNLESINLSFTGISD---GSLRKLAGLSSLKSLNLDARQITDTGLA 366
+G ++ L+ LTNL +F +SD G ++ LA L++L L L QI D +
Sbjct: 131 NPIGD--IKPLASLTNL-----TFLDLSDNQIGDIKPLASLTNLTILFLSDNQIGD--IK 181
Query: 367 ALTSLTGLTHLDLFGARITD 386
L SLT LT L L +I D
Sbjct: 182 PLASLTNLTFLFLSDNKIGD 201
>gi|313485052|gb|ADR53000.1| InlA [Listeria monocytogenes]
Length = 771
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 116/358 (32%), Positives = 171/358 (47%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNY 424
>gi|219821372|gb|ACL37826.1| internalin A [Listeria monocytogenes]
Length = 739
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 108/333 (32%), Positives = 169/333 (50%), Gaps = 36/333 (10%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL--SFGNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 252
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
L GL L LEL++ Q+ + +S L NL + L F ISD + ++ L+ L+ L
Sbjct: 253 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRL 308
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
+++D +++L +LT + L +I+D
Sbjct: 309 FFYNNKVSD--VSSLANLTNINWLSAGHNQISD 339
>gi|115689700|ref|XP_783241.2| PREDICTED: F-box/LRR-repeat protein 13-like [Strongylocentrotus
purpuratus]
Length = 871
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 102/377 (27%), Positives = 165/377 (43%), Gaps = 57/377 (15%)
Query: 20 LTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHL- 77
LT+ S +A C LQDL + + PG+ND M +A S LL +++S +++TD+ L L
Sbjct: 312 LTKPSFKAVGQCRNLQDLNMSECPGLNDDTMKYVAEGCSVLLYLNISFTNITDATLRLLA 371
Query: 78 KDCSNLQSLDFNFCIQISDGGLEHL---RGLSNLTSLSFRRNNAITAQGMKAFA-GLINL 133
+ CSNLQ L +C + SD GL++L RG L L IT G K + G L
Sbjct: 372 RCCSNLQYLSLAYCKRFSDKGLQYLGTGRGGRRLVHLDLSGCPQITVNGYKNISGGCPKL 431
Query: 134 VKLDLERCTRIHGGLV--------NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
L + C + ++ N++ + L + N ITD +K L+ L+ +
Sbjct: 432 QHLIINDCYTLRDDMIVAVAANCHNIRCISFLYTPN------ITDVALKALAVHRKLQQI 485
Query: 186 QISCS-KVTDSGIAYL-KGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLS 241
+I + K+TD+ L + L + + CP +T A L SL+ ++ LN+ C ++S
Sbjct: 486 RIEGNCKITDASFKLLGRYCVDLRHIYVSDCPRITDAALKSLATCRNINVLNVADCIRIS 545
Query: 242 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLC 300
D+G LV L +NL +C + D ++ +T
Sbjct: 546 DNGVRN---------------------LVEGPSGPKLREMNLTNCVRVTDVSIMKITQ-- 582
Query: 301 NLKCLELS------DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 354
KC L + +G L + L S+++S I+D L L L+ +
Sbjct: 583 --KCYSLVYGSFCFSEHITDAGAEMLGNMPALSSLDISGCNITDTGLGALGNCYHLRDVV 640
Query: 355 L-DARQITDTGLAALTS 370
L + QITD G+
Sbjct: 641 LSECHQITDLGIQKFAQ 657
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 89/175 (50%), Gaps = 28/175 (16%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRR 115
+L S+D+SG ++TD+GL L +C +L+ + + C QI+D G++ + +L L
Sbjct: 610 PALSSLDISGCNITDTGLGALGNCYHLRDVVLSECHQITDLGIQKFAQQCRDLDRLDISH 669
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
+T Q +K A C R KL LNI C+ ++D ++
Sbjct: 670 CLQLTDQAIKNLAF-----------CCR------------KLSFLNIAGCSQLSDMSIRY 706
Query: 176 LSGLTN-LKSLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGCP-VTAACLDSLSA 226
+SG+ + L+SL S C KV+D + +L KGL++L LN+ C +T + LSA
Sbjct: 707 ISGVCHYLQSLNFSGCIKVSDDSMRFLRKGLKRLRNLNMLYCHLITKPTIVKLSA 761
Score = 43.1 bits (100), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 66/246 (26%), Positives = 117/246 (47%), Gaps = 16/246 (6%)
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGCPVT 217
LNIK C+ +T K + NL+ L +S C + D + Y+ +G L LN+ +T
Sbjct: 304 LNIKGCSMLTKPSFKAVGQCRNLQDLNMSECPGLNDDTMKYVAEGCSVLLYLNISFTNIT 363
Query: 218 AACLDSLSALGS-LFYLNLNRCQ-LSDDGCEKF-SKIGSLKVLNL---GFNEITDECLVH 271
A L L+ S L YL+L C+ SD G + + G ++++L G +IT +
Sbjct: 364 DATLRLLARCCSNLQYLSLAYCKRFSDKGLQYLGTGRGGRRLVHLDLSGCPQITVNGYKN 423
Query: 272 LK-GLTNLESLNLDSC-GIGDEGLVNLTGLC-NLKCLE-LSDTQVGSSGLRHLSGLTNLE 327
+ G L+ L ++ C + D+ +V + C N++C+ L + L+ L+ L+
Sbjct: 424 ISGGCPKLQHLIINDCYTLRDDMIVAVAANCHNIRCISFLYTPNITDVALKALAVHRKLQ 483
Query: 328 SINLSFT-GISDGSLRKLAGL-SSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGA-R 383
I + I+D S + L L+ + + D +ITD L +L + + L++ R
Sbjct: 484 QIRIEGNCKITDASFKLLGRYCVDLRHIYVSDCPRITDAALKSLATCRNINVLNVADCIR 543
Query: 384 ITDSGA 389
I+D+G
Sbjct: 544 ISDNGV 549
>gi|290990083|ref|XP_002677666.1| predicted protein [Naegleria gruberi]
gi|284091275|gb|EFC44922.1| predicted protein [Naegleria gruberi]
Length = 262
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 72/248 (29%), Positives = 118/248 (47%), Gaps = 8/248 (3%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL-KGLQKLTLLNLE 212
L +L SLNI +C+ D+ PL L +L L I+ + G+ + + LQ+L L++
Sbjct: 5 LKQLNSLNIGYCSV---EDIAPLGQLKDLTCLNINHIPIGLEGLKIIGENLQQLKSLDVT 61
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRC--QLSDDGCEKFSKIGSLKVLNLGFNEIT--DEC 268
C +T + L +L L + Q G E S++ LK LN+G + +
Sbjct: 62 NCGITNEAAQYIRQLNNLESLTITFVFYQKCLKGVEALSEMKQLKSLNIGNSSDIGGPQG 121
Query: 269 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 328
+ L NL SL +D I DEG ++ L +L+ L+L+ + G + +SGL ++
Sbjct: 122 AKLISSLYNLTSLRMDGTMIEDEGARFISELKHLRFLDLTGNNISDEGAKSISGLKHVTD 181
Query: 329 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 388
++++ I D + +A ++ LK L LD +I D G + L L L + G RIT
Sbjct: 182 LDMARNDIGDEGAKAIATMNQLKRLILDNNKIGDDGAQYIGKLPQLRSLAVCGNRITPVS 241
Query: 389 AAYLRSKF 396
LR F
Sbjct: 242 IQNLRMSF 249
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 102/229 (44%), Gaps = 27/229 (11%)
Query: 47 KWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI-QISDGGLEHLRGL 105
+ + +I L S+D++ +T+ +++ +NL+SL F Q G+E L +
Sbjct: 43 EGLKIIGENLQQLKSLDVTNCGITNEAAQYIRQLNNLESLTITFVFYQKCLKGVEALSEM 102
Query: 106 SNLTSLSFRRNNAI-TAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW 164
L SL+ ++ I QG K + L NL L R+ G +
Sbjct: 103 KQLKSLNIGNSSDIGGPQGAKLISSLYNLTSL------RMDGTM---------------- 140
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
I D + +S L +L+ L ++ + ++D G + GL+ +T L++ + ++
Sbjct: 141 ---IEDEGARFISELKHLRFLDLTGNNISDEGAKSISGLKHVTDLDMARNDIGDEGAKAI 197
Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
+ + L L L+ ++ DDG + K+ L+ L + N IT + +L+
Sbjct: 198 ATMNQLKRLILDNNKIGDDGAQYIGKLPQLRSLAVCGNRITPVSIQNLR 246
>gi|47092503|ref|ZP_00230292.1| internalin A [Listeria monocytogenes str. 4b H7858]
gi|417314487|ref|ZP_12101186.1| internalin A [Listeria monocytogenes J1816]
gi|47019095|gb|EAL09839.1| internalin A [Listeria monocytogenes str. 4b H7858]
gi|130774783|gb|ABO32406.1| InlA [Listeria monocytogenes]
gi|130774787|gb|ABO32408.1| InlA [Listeria monocytogenes]
gi|167861878|gb|ACA05638.1| InlA [Listeria monocytogenes]
gi|167861926|gb|ACA05662.1| InlA [Listeria monocytogenes]
gi|194239406|emb|CAQ76843.1| internalin A [Listeria monocytogenes]
gi|223006800|gb|ACM69357.1| internalin A [Listeria monocytogenes]
gi|223006808|gb|ACM69361.1| internalin A [Listeria monocytogenes]
gi|294358399|gb|ADE73852.1| InlA [Listeria monocytogenes]
gi|298359958|gb|ADI77558.1| internalin A [Listeria monocytogenes]
gi|298359988|gb|ADI77573.1| internalin A [Listeria monocytogenes]
gi|298360010|gb|ADI77584.1| internalin A [Listeria monocytogenes]
gi|298360208|gb|ADI77683.1| internalin A [Listeria monocytogenes]
gi|298360370|gb|ADI77764.1| internalin A [Listeria monocytogenes]
gi|298360402|gb|ADI77780.1| internalin A [Listeria monocytogenes]
gi|298360472|gb|ADI77815.1| internalin A [Listeria monocytogenes]
gi|298360544|gb|ADI77851.1| internalin A [Listeria monocytogenes]
gi|298360592|gb|ADI77875.1| internalin A [Listeria monocytogenes]
gi|328467733|gb|EGF38785.1| internalin A [Listeria monocytogenes J1816]
gi|443428820|gb|AGC92209.1| truncated internalin A [Listeria monocytogenes]
gi|443428844|gb|AGC92221.1| truncated internalin A [Listeria monocytogenes]
gi|443428846|gb|AGC92222.1| truncated internalin A [Listeria monocytogenes]
gi|443428850|gb|AGC92224.1| truncated internalin A [Listeria monocytogenes]
gi|443428854|gb|AGC92226.1| truncated internalin A [Listeria monocytogenes]
gi|443428856|gb|AGC92227.1| truncated internalin A [Listeria monocytogenes]
Length = 797
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 116/358 (32%), Positives = 171/358 (47%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNY 424
>gi|219821360|gb|ACL37818.1| internalin A [Listeria monocytogenes]
Length = 742
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 107/329 (32%), Positives = 166/329 (50%), Gaps = 39/329 (11%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQL--SFGNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 252
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
L GL L LEL++ Q+ + +S L NL + L F ISD + ++ L+ L+ L
Sbjct: 253 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRL 308
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGA 382
+++D ++SL LT+++ A
Sbjct: 309 FFYNNKVSD-----VSSLANLTNINWLSA 332
>gi|371942090|gb|AEX60857.1| internaline [Listeria monocytogenes]
Length = 790
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 116/358 (32%), Positives = 171/358 (47%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNY 424
>gi|219821294|gb|ACL37774.1| internalin A [Listeria monocytogenes]
Length = 742
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 107/329 (32%), Positives = 166/329 (50%), Gaps = 39/329 (11%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQL--SFGNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 252
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
L GL L LEL++ Q+ + +S L NL + L F ISD + ++ L+ L+ L
Sbjct: 253 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRL 308
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGA 382
+++D ++SL LT+++ A
Sbjct: 309 FFYNNKVSD-----VSSLANLTNINWLSA 332
>gi|290999054|ref|XP_002682095.1| predicted protein [Naegleria gruberi]
gi|284095721|gb|EFC49351.1| predicted protein [Naegleria gruberi]
Length = 357
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 80/312 (25%), Positives = 145/312 (46%), Gaps = 33/312 (10%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLE---HLRGLSNLTSLSFRRNNAITAQGMKAFAGLINL 133
LK L+ L + C+ + GLE ++ L L SLS R N I A+G K + + L
Sbjct: 53 LKSIGTLKHL-IHLCVDFNGIGLEGANYISQLEKLESLSIRYN-YIGAEGAKVISEMKTL 110
Query: 134 VKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT 193
L++ N I K +S + L L I +KV
Sbjct: 111 TWLNVS-------------------------SNRIGGEGAKAISQMKQLTYLDIGDNKVG 145
Query: 194 DSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS 253
D + L L +LT L+++ + ++++S + L L++N C + D+ CE+ SK+
Sbjct: 146 DEEVILLSELDQLTALSID--RINPDGINAISKMNKLVSLSINNCTILDE-CEELSKMKQ 202
Query: 254 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 313
L +L++ N I+ + + L GL+ L LN+ S GD+G +++ + L L ++D Q+
Sbjct: 203 LTLLDIKSNGISAKGVKQLSGLSQLTHLNISSNAFGDDGAKSISEIKQLTELFVNDCQIS 262
Query: 314 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 373
G++ L L L +++S I+D L L L +L ++ +++ G+ + ++
Sbjct: 263 DDGMKSLGDLNELTILDISNNYITDEGSLYLTKLEKLTALEVNNNELSYQGVKHMINMNQ 322
Query: 374 LTHLDLFGARIT 385
LT L + + T
Sbjct: 323 LTALSIRHNQFT 334
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 82/292 (28%), Positives = 140/292 (47%), Gaps = 13/292 (4%)
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG----GLVNLKGLMKLESL 160
+ NLT L+ ++ G+K+ L +L+ L C +G G + L KLESL
Sbjct: 35 MKNLTHLTLG-SHFTNEDGLKSIGTLKHLIHL----CVDFNGIGLEGANYISQLEKLESL 89
Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 220
+I++ N I K +S + L L +S +++ G + +++LT L++ V
Sbjct: 90 SIRY-NYIGAEGAKVISEMKTLTWLNVSSNRIGGEGAKAISQMKQLTYLDIGDNKVGDEE 148
Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 280
+ LS L L L+++R ++ DG SK+ L L++ I DEC L + L
Sbjct: 149 VILLSELDQLTALSIDR--INPDGINAISKMNKLVSLSINNCTILDEC-EELSKMKQLTL 205
Query: 281 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 340
L++ S GI +G+ L+GL L L +S G G + +S + L + ++ ISD
Sbjct: 206 LDIKSNGISAKGVKQLSGLSQLTHLNISSNAFGDDGAKSISEIKQLTELFVNDCQISDDG 265
Query: 341 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
++ L L+ L L++ ITD G LT L LT L++ ++ G ++
Sbjct: 266 MKSLGDLNELTILDISNNYITDEGSLYLTKLEKLTALEVNNNELSYQGVKHM 317
Score = 42.0 bits (97), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 66/134 (49%)
Query: 254 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 313
+K L +N + + + + NL L L S ++GL ++ L +L L + +G
Sbjct: 14 IKFLTFNYNTLGAKVIQGFVLMKNLTHLTLGSHFTNEDGLKSIGTLKHLIHLCVDFNGIG 73
Query: 314 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 373
G ++S L LES+++ + I + ++ + +L LN+ + +I G A++ +
Sbjct: 74 LEGANYISQLEKLESLSIRYNYIGAEGAKVISEMKTLTWLNVSSNRIGGEGAKAISQMKQ 133
Query: 374 LTHLDLFGARITDS 387
LT+LD+ ++ D
Sbjct: 134 LTYLDIGDNKVGDE 147
>gi|371942140|gb|AEX60882.1| internaline [Listeria monocytogenes]
Length = 790
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 116/358 (32%), Positives = 171/358 (47%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNY 424
>gi|290978509|ref|XP_002671978.1| predicted protein [Naegleria gruberi]
gi|284085551|gb|EFC39234.1| predicted protein [Naegleria gruberi]
Length = 284
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 108/221 (48%), Gaps = 2/221 (0%)
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
K +S L NL +L I S++ + G+ + L+ LT LN+ + ++ + L +L L
Sbjct: 57 KSISDLKNLTTLDIGYSRIGNEGLESIGQLENLTRLNIRSNNI--GLVEPIINLKTLTAL 114
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
++ + ++G + SK+ L L + +++I +E +L L NL L+L IGDEG
Sbjct: 115 DIGENSIGNEGVKSISKLTELTSLFIDYDDINEEGAKYLCELPNLTILDLTGSNIGDEGA 174
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
+ LK L LS + + G+ +LS L L + LS I D L+ L+ L L L
Sbjct: 175 KFIGQSTKLKHLFLSLADISNVGVNYLSSLNELVDLILSLNDIGDEGLKHLSSLKMLNYL 234
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRS 394
N+ QITD G+ + + L + + +T G ++
Sbjct: 235 NVSGNQITDEGVVFIREMENLKRISITNNLLTAVGENLIQE 275
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 78/254 (30%), Positives = 118/254 (46%), Gaps = 32/254 (12%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
+ D NL +LD + +I + GLE + L NLT L+ R NN I LV+
Sbjct: 59 ISDLKNLTTLDIGYS-RIGNEGLESIGQLENLTRLNIRSNN-------------IGLVE- 103
Query: 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG 196
++NLK L L+ N I + +K +S LT L SL I + + G
Sbjct: 104 ----------PIINLKTLTALDI----GENSIGNEGVKSISKLTELTSLFIDYDDINEEG 149
Query: 197 IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 256
YL L LT+L+L G + + L +L L+ +S+ G S + L
Sbjct: 150 AKYLCELPNLTILDLTGSNIGDEGAKFIGQSTKLKHLFLSLADISNVGVNYLSSLNELVD 209
Query: 257 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD---TQVG 313
L L N+I DE L HL L L LN+ I DEG+V + + NLK + +++ T VG
Sbjct: 210 LILSLNDIGDEGLKHLSSLKMLNYLNVSGNQITDEGVVFIREMENLKRISITNNLLTAVG 269
Query: 314 SSGLRHLSGLTNLE 327
+ ++ +S T+L+
Sbjct: 270 ENLIQEMSITTDLD 283
>gi|371942068|gb|AEX60846.1| internaline [Listeria monocytogenes]
gi|371942088|gb|AEX60856.1| internaline [Listeria monocytogenes]
gi|371942106|gb|AEX60865.1| internaline [Listeria monocytogenes]
gi|371942134|gb|AEX60879.1| internaline [Listeria monocytogenes]
Length = 790
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 116/358 (32%), Positives = 171/358 (47%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNY 424
>gi|325108218|ref|YP_004269286.1| hypothetical protein Plabr_1653 [Planctomyces brasiliensis DSM
5305]
gi|324968486|gb|ADY59264.1| hypothetical protein Plabr_1653 [Planctomyces brasiliensis DSM
5305]
Length = 1046
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/232 (28%), Positives = 106/232 (45%), Gaps = 23/232 (9%)
Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 220
++ W NC D D+ LS +L+ + I+ +TD L Q+L + L G +T A
Sbjct: 312 DLDWMNC-NDDDVALLSDCPSLRRVYIASDAITDRAAELLADTQQLRHIRLTGNQLTEAS 370
Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 280
L LS RCQ ++I +++ G I +E L L
Sbjct: 371 LRHLS-----------RCQ---------AEI--IELTGRGLKHIPNEIFSQLAKSETLRD 408
Query: 281 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 340
L L + D+ L L+ L +L+ L Q+ +GL+ L+ + L+ I L +D +
Sbjct: 409 LRLWDTALTDDNLQALSSLTSLRVLCADGHQLTPAGLKQLASMPFLQEIRLPGANWTDET 468
Query: 341 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
+ L L SL+ ++L IT+ GLA L ++T L +DL G IT+ G A L
Sbjct: 469 IALLQPLKSLRRIDLADSAITNAGLAELANITSLEWIDLQGTDITNQGVAAL 520
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 103/229 (44%), Gaps = 31/229 (13%)
Query: 50 DVIASQGSSLLS-------VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
D I + + LL+ + L+G+ +T++ L HL C I+++ GL+H+
Sbjct: 340 DAITDRAAELLADTQQLRHIRLTGNQLTEASLRHLSRCQAE-------IIELTGRGLKHI 392
Query: 103 RG--LSNLTSLSFRRN-----NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLM 155
S L R+ A+T ++A + L +L L + GL L +
Sbjct: 393 PNEIFSQLAKSETLRDLRLWDTALTDDNLQALSSLTSLRVLCADGHQLTPAGLKQLASMP 452
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215
L+ + + N TD + L L +L+ + ++ S +T++G+A L + L ++L+G
Sbjct: 453 FLQEIRLPGANW-TDETIALLQPLKSLRRIDLADSAITNAGLAELANITSLEWIDLQGTD 511
Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 264
+T + +L+AL +L R +L C + GS L+ F +I
Sbjct: 512 ITNQGVAALAALN-----DLQRLELRGTRCNR----GSWNTLSKPFPDI 551
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 72/162 (44%), Gaps = 14/162 (8%)
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
+DD S SL+ + + + ITD L L + L + + L +L+ C
Sbjct: 319 NDDDVALLSDCPSLRRVYIASDAITDRAAELLADTQQLRHIRLTGNQLTEASLRHLS-RC 377
Query: 301 NLKCLELSDTQVGSSGLRH--------LSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
+ +EL+ GL+H L+ L + L T ++D +L+ L+ L+SL+
Sbjct: 378 QAEIIELT-----GRGLKHIPNEIFSQLAKSETLRDLRLWDTALTDDNLQALSSLTSLRV 432
Query: 353 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRS 394
L D Q+T GL L S+ L + L GA TD A L+
Sbjct: 433 LCADGHQLTPAGLKQLASMPFLQEIRLPGANWTDETIALLQP 474
>gi|22347566|gb|AAM95928.1| internalin A precursor [Listeria monocytogenes]
Length = 746
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 107/329 (32%), Positives = 166/329 (50%), Gaps = 39/329 (11%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 42 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 95
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 96 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 147
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 148 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 200
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 201 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 254
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
L GL L LEL++ Q+ + +S L NL + L F ISD + ++ L+ L+ L
Sbjct: 255 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRL 310
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGA 382
+++D ++SL LT+++ A
Sbjct: 311 FFYNNKVSD-----VSSLANLTNINWLSA 334
>gi|290979019|ref|XP_002672232.1| predicted protein [Naegleria gruberi]
gi|284085807|gb|EFC39488.1| predicted protein [Naegleria gruberi]
Length = 426
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 72/301 (23%), Positives = 142/301 (47%), Gaps = 3/301 (0%)
Query: 94 ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
I G +H+ GL LT L+ R N IT G K + + L L++ G + G
Sbjct: 117 IGPEGAKHISGLEQLTILNIRAN-EITVDGAKFISEMKQLTVLNIIGNDICDEGAKFISG 175
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
+ +L +L+I N I ++ K +S + N+ L I + + D + K +++LT LN+
Sbjct: 176 MKQLTNLDIS-VNNIGENGAKYVSEMLNITKLNIGFNSINDCVECFGK-MKQLTDLNVNS 233
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
+ + +S+ L +L++ +S+ S++ ++ L++ N I D + +
Sbjct: 234 SCIGLCGIVFISSFNQLTHLSIASNSISNYEASHISQMKNVIKLDISDNRIGDNGVQSIS 293
Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333
+ L LN+ S I G+ + + NL L ++ +G G +S + +L +++
Sbjct: 294 EMNQLTELNVSSIDITPIGIQYICKMDNLTYLIIAHNNIGVKGANQISEMKHLAQLSIYN 353
Query: 334 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
+ D + ++ + L LN+ + +I D G+ AL+ + LT L+ I++ G Y+R
Sbjct: 354 NAVGDEGAKFISEMEQLTFLNIGSNEIGDEGVKALSGMKQLTELNTVDNNISEEGENYIR 413
Query: 394 S 394
Sbjct: 414 E 414
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 109/242 (45%), Gaps = 26/242 (10%)
Query: 176 LSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
L + LK L + + S + SG Y+ L++LT L + C L +L SL YL
Sbjct: 28 LDSMKELKKLNLENNSNIHPSGFKYICSLEQLTDLYMTFCYFRLPIAKHLPSLKSLTYLL 87
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG----- 289
+ + +G + ++ LK L++ N I E H+ GL L LN+ + I
Sbjct: 88 ITGNYIGVEGAKYIGEMKQLKQLHIANNNIGPEGAKHISGLEQLTILNIRANEITVDGAK 147
Query: 290 -------------------DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 330
DEG ++G+ L L++S +G +G +++S + N+ +N
Sbjct: 148 FISEMKQLTVLNIIGNDICDEGAKFISGMKQLTNLDISVNNIGENGAKYVSEMLNITKLN 207
Query: 331 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 390
+ F I+D + + L LN+++ I G+ ++S LTHL + I++ A+
Sbjct: 208 IGFNSIND-CVECFGKMKQLTDLNVNSSCIGLCGIVFISSFNQLTHLSIASNSISNYEAS 266
Query: 391 YL 392
++
Sbjct: 267 HI 268
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 68/286 (23%), Positives = 133/286 (46%), Gaps = 11/286 (3%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L +++ G+D+ D G + L +LD + I + G +++ + N+T L+
Sbjct: 150 SEMKQLTVLNIIGNDICDEGAKFISGMKQLTNLDISVN-NIGENGAKYVSEMLNITKLNI 208
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
N+ ++ F + L L++ G+V + +L L+I N I++ +
Sbjct: 209 GFNS--INDCVECFGKMKQLTDLNVNSSCIGLCGIVFISSFNQLTHLSI-ASNSISNYEA 265
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
+S + N+ L IS +++ D+G+ + + +LT LN+ +T + + + +L YL
Sbjct: 266 SHISQMKNVIKLDISDNRIGDNGVQSISEMNQLTELNVSSIDITPIGIQYICKMDNLTYL 325
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+ + G + S++ L L++ N + DE + + L LN+ S IGDEG+
Sbjct: 326 IIAHNNIGVKGANQISEMKHLAQLSIYNNAVGDEGAKFISEMEQLTFLNIGSNEIGDEGV 385
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS-FTGISD 338
L+G+ L L D + G + + +NL+ TGI D
Sbjct: 386 KALSGMKQLTELNTVDNNISEEGENY------IREMNLTDHTGIYD 425
>gi|219821390|gb|ACL37838.1| internalin A [Listeria monocytogenes]
Length = 744
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 107/329 (32%), Positives = 166/329 (50%), Gaps = 39/329 (11%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 252
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
L GL L LEL++ Q+ + +S L NL + L F ISD + ++ L+ L+ L
Sbjct: 253 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRL 308
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGA 382
+++D ++SL LT+++ A
Sbjct: 309 FFYNNKVSD-----VSSLANLTNINWLSA 332
>gi|313485046|gb|ADR52998.1| InlA [Listeria monocytogenes]
Length = 774
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 116/358 (32%), Positives = 171/358 (47%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNY 424
>gi|297171917|gb|ADI22904.1| hypothetical protein [uncultured Rhizobium sp. HF0500_35F13]
Length = 412
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 85/165 (51%), Gaps = 2/165 (1%)
Query: 198 AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 257
A + G + +T+ +T L+ L LG++ YL+L+ + DDG +K+ L+VL
Sbjct: 41 AQVSGTRSVTV-RFTNSALTGKDLEPLGKLGTVHYLDLSDTSVGDDGMVHINKLEGLQVL 99
Query: 258 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 317
L EITD L L++L L +GD L L L+++ QV SGL
Sbjct: 100 VLSGTEITDTGFSQLSNLSDLNQLTASEL-MGDGTTAALASATKLNFLDMTGGQVTDSGL 158
Query: 318 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
HLSG+ NL+ + LS T I+D L L ++ L+ L L+ +ITD
Sbjct: 159 SHLSGMKNLKRLTLSRTAITDKGLEHLQSITVLRDLQLNNTKITD 203
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 79/155 (50%), Gaps = 2/155 (1%)
Query: 159 SLNIKWCN-CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
S+ +++ N +T D++PL L + L +S + V D G+ ++ L+ L +L L G +T
Sbjct: 48 SVTVRFTNSALTGKDLEPLGKLGTVHYLDLSDTSVGDDGMVHINKLEGLQVLVLSGTEIT 107
Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 277
LS L L L + + D + L L++ ++TD L HL G+ N
Sbjct: 108 DTGFSQLSNLSDLNQLTASEL-MGDGTTAALASATKLNFLDMTGGQVTDSGLSHLSGMKN 166
Query: 278 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 312
L+ L L I D+GL +L + L+ L+L++T++
Sbjct: 167 LKRLTLSRTAITDKGLEHLQSITVLRDLQLNNTKI 201
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 66/135 (48%), Gaps = 8/135 (5%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR--NNAI 119
+DLS + V D G++H+ LQ L + +I+D G L LS+L L+ +
Sbjct: 75 LDLSDTSVGDDGMVHINKLEGLQVLVLS-GTEITDTGFSQLSNLSDLNQLTASELMGDGT 133
Query: 120 TAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGL 179
TA A A L LD+ GL +L G+ L+ L + ITD ++ L +
Sbjct: 134 TA----ALASATKLNFLDMTGGQVTDSGLSHLSGMKNLKRLTLSRT-AITDKGLEHLQSI 188
Query: 180 TNLKSLQISCSKVTD 194
T L+ LQ++ +K+TD
Sbjct: 189 TVLRDLQLNNTKITD 203
>gi|167862012|gb|ACA05705.1| InlA [Listeria monocytogenes]
Length = 797
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 116/358 (32%), Positives = 171/358 (47%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNY 424
>gi|313485056|gb|ADR53002.1| InlA [Listeria monocytogenes]
Length = 789
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 116/358 (32%), Positives = 171/358 (47%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNY 424
>gi|219821291|gb|ACL37772.1| internalin A [Listeria monocytogenes]
Length = 742
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 107/329 (32%), Positives = 166/329 (50%), Gaps = 39/329 (11%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNKVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 252
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
L GL L LEL++ Q+ + +S L NL + L F ISD + ++ L+ L+ L
Sbjct: 253 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRL 308
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGA 382
+++D ++SL LT+++ A
Sbjct: 309 FFYNNKVSD-----VSSLANLTNINWLSA 332
>gi|150371888|dbj|BAF65733.1| internalin A [Listeria monocytogenes]
gi|150371890|dbj|BAF65734.1| internalin A [Listeria monocytogenes]
Length = 797
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 116/358 (32%), Positives = 171/358 (47%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNY 424
>gi|112961772|gb|ABI28534.1| internalin A [Listeria monocytogenes]
Length = 748
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 116/358 (32%), Positives = 171/358 (47%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 49 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 102
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 103 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL--SFGNQVTD--LKPL 154
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 155 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 207
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 208 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 261
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 262 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 319
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 320 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNY 375
>gi|112961700|gb|ABI28486.1| internalin A [Listeria monocytogenes]
Length = 748
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 116/358 (32%), Positives = 171/358 (47%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 49 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 102
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 103 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL--SFGNQVTD--LKPL 154
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 155 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 207
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 208 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 261
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 262 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 319
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 320 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNY 375
>gi|395538856|ref|XP_003771390.1| PREDICTED: F-box/LRR-repeat protein 14, partial [Sarcophilus
harrisii]
Length = 341
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 102/314 (32%), Positives = 160/314 (50%), Gaps = 36/314 (11%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + G ++ + +
Sbjct: 9 RGIRRVQILSLRRSLSYVIQGMA------NIESLNLSGCYNLTDNGLGHAVVQEIGSPRA 62
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LN+ C ITDS + ++ LK L++ CS +T++G+ + GLQ+L LNL GC
Sbjct: 63 LNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRGC 120
Query: 215 PVTA-------ACLDSLSALG--SLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-N 262
+ A + +A G L L L CQ L+D + S+ + L++LNL F
Sbjct: 121 RHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLAGLRLLNLSFCG 180
Query: 263 EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRH 319
I+D L+HL + +L SLNL SC I D G+++L G L L++S +VG L +
Sbjct: 181 GISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAY 240
Query: 320 LS-GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALTS-LTGLT 375
++ GL L S++ ISD + R + + L++LN+ +ITD GL + L+ LT
Sbjct: 241 IAQGLDGLNSLSRCPCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLT 300
Query: 376 HLDLFG-ARITDSG 388
+DL+G RIT G
Sbjct: 301 GIDLYGCTRITKRG 314
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 95/315 (30%), Positives = 165/315 (52%), Gaps = 32/315 (10%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
++ +N++SL+ + C ++D GL H ++ + + +L+ IT + A + L
Sbjct: 27 IQGMANIESLNLSGCYNLTDNGLGHAVVQEIGSPRALNLSLCKQITDSSLGRIAQYLKGL 86
Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LK 183
L+L C+ I G L+ GL +L+SLN++ C ++D + L+G+T L+
Sbjct: 87 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRGCRHLSDVGIGHLAGMTRSAAEGCLGLE 146
Query: 184 SLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-Q 239
L + C K+TD + ++ +GL L LLNL C ++ A L LS +GSL LNL C
Sbjct: 147 QLTLQDCQKLTDLSLKHISRGLAGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDN 206
Query: 240 LSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGLVN 295
+SD G + +GSL++ L++ F +++ D+ L ++ +GL L SL+ C I D+G+
Sbjct: 207 ISDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLNSLSRCPCHISDDGINR 265
Query: 296 LT----GLCNL---KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 348
+ GL L +C+ ++D + HLS LT ++ T I+ L ++ L
Sbjct: 266 MVRQMHGLRTLNIGQCVRITDKGLELIA-EHLSQLTGIDLYG--CTRITKRGLERITQLP 322
Query: 349 SLKSLNLDARQITDT 363
LK LNL Q+T++
Sbjct: 323 CLKVLNLGLWQMTES 337
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 101/204 (49%), Gaps = 29/204 (14%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ + + L+ L+ +FC ISD GL HL + +L SL+ R + I+ G+
Sbjct: 156 LTDLSLKHISRGLAGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 215
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C ++ + +GL L SL+ C+ D + + + L++
Sbjct: 216 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLNSLSRCPCHISDDGINRMVRQMHGLRT 275
Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
L I C ++TD G+ + + L +LT ++L GC +++
Sbjct: 276 LNIGQCVRITDKGLELIAEHLSQLTGIDLYGCT-----------------------RITK 312
Query: 243 DGCEKFSKIGSLKVLNLGFNEITD 266
G E+ +++ LKVLNLG ++T+
Sbjct: 313 RGLERITQLPCLKVLNLGLWQMTE 336
>gi|298359924|gb|ADI77541.1| internalin A [Listeria monocytogenes]
gi|298359926|gb|ADI77542.1| internalin A [Listeria monocytogenes]
gi|298360172|gb|ADI77665.1| internalin A [Listeria monocytogenes]
gi|298360388|gb|ADI77773.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 116/358 (32%), Positives = 171/358 (47%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNY 424
>gi|298360648|gb|ADI77903.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 116/358 (32%), Positives = 171/358 (47%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNY 424
>gi|443428800|gb|AGC92199.1| truncated internalin A [Listeria monocytogenes]
gi|443428802|gb|AGC92200.1| truncated internalin A [Listeria monocytogenes]
gi|443428806|gb|AGC92202.1| truncated internalin A [Listeria monocytogenes]
gi|443428824|gb|AGC92211.1| truncated internalin A [Listeria monocytogenes]
gi|443428830|gb|AGC92214.1| truncated internalin A [Listeria monocytogenes]
gi|443428832|gb|AGC92215.1| truncated internalin A [Listeria monocytogenes]
gi|443428834|gb|AGC92216.1| truncated internalin A [Listeria monocytogenes]
Length = 797
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 116/358 (32%), Positives = 171/358 (47%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNY 424
>gi|371942070|gb|AEX60847.1| internaline [Listeria monocytogenes]
Length = 789
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 116/358 (32%), Positives = 171/358 (47%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNY 424
>gi|294358389|gb|ADE73847.1| InlA [Listeria monocytogenes]
Length = 800
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 116/358 (32%), Positives = 171/358 (47%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNY 424
>gi|384252153|gb|EIE25630.1| hypothetical protein COCSUDRAFT_83637 [Coccomyxa subellipsoidea
C-169]
Length = 433
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 99/373 (26%), Positives = 183/373 (49%), Gaps = 25/373 (6%)
Query: 32 ALQ-DLCLGQ-YPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFN 89
ALQ +CL + +P + +MD +G V+++ VT++G + L++L
Sbjct: 56 ALQHPVCLAERFPELQALFMD--GCEG-----VNMTNEQVTEAGRLRY-----LKTLSLA 103
Query: 90 FCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGL 148
C +D GL L + L LS + NA+T++ + +L+ LDL +C + +
Sbjct: 104 GCRACTDKGLAGLAVIEGLQKLSLSKCNALTSRTLDLLQTSSSLISLDLGQCAWVDDSSM 163
Query: 149 VNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLT 207
L L+ L++ C +T+ ++ ++ L +++L +S ++ D+G+ L + L
Sbjct: 164 ALLCNSASLKQLSLADCVRLTNRGVQSVAKLKCIEALNLSGLREIDDAGVEALAAVTSLR 223
Query: 208 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF-NEIT 265
LNL+ C +L+ LG L L++ C ++DD S + SL+ L L ++IT
Sbjct: 224 ELNLDRCGQVRGL--TLAKLGGLHKLSMCDCPCIADDSLGCLSGVTSLEDLKLDMCDKIT 281
Query: 266 DECLVHLKGLTNLESLNLDSCGIGD-EGLVNLTGLCNLKCLELSD-TQVGSSGLRHLS-G 322
D+ L ++ LE L+L C D E + L+ L L+ L LS + + GL HL+ G
Sbjct: 282 DKGAGALASMSALEDLDLHRCERLDCEAMRRLSALGQLRSLRLSGCVYIKAEGLGHLARG 341
Query: 323 LTNLESINLS-FTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLF 380
L ++L+ GI D ++ LA + L++LN++ + ++D G A L + + + +
Sbjct: 342 CPLLSRLDLAGCVGIKDEGMQALAEMQHLQALNINQCKYVSDAGAAVLATSVSIRDVFVL 401
Query: 381 GARITDSGAAYLR 393
I+ G L+
Sbjct: 402 TTNISQHGLQLLQ 414
>gi|112959468|gb|ABI27261.1| internalin A [Listeria monocytogenes]
Length = 730
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 116/358 (32%), Positives = 171/358 (47%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 28 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 81
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 82 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 133
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 134 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 186
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 187 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 240
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 241 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 298
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 299 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNY 354
>gi|371942076|gb|AEX60850.1| internaline [Listeria monocytogenes]
gi|371942078|gb|AEX60851.1| internaline [Listeria monocytogenes]
gi|371942082|gb|AEX60853.1| internaline [Listeria monocytogenes]
Length = 789
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 116/358 (32%), Positives = 171/358 (47%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQL--SFGNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNY 424
>gi|223698613|gb|ACN18982.1| internalin A [Listeria monocytogenes]
Length = 715
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 106/329 (32%), Positives = 167/329 (50%), Gaps = 39/329 (11%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 13 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 66
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL+ L+ L+ N +TD +KPL
Sbjct: 67 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLISLQQLSF--GNQVTD--LKPL 118
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 119 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 171
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 172 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 225
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
L GL L LEL++ Q+ + +S L NL + L F ISD + ++ L+ L+ L
Sbjct: 226 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRL 281
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGA 382
+++D ++SL LT+++ A
Sbjct: 282 FFYNNKVSD-----VSSLANLTNINWLSA 305
>gi|359464005|ref|ZP_09252568.1| internalin A protein [Acaryochloris sp. CCMEE 5410]
Length = 624
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 121/431 (28%), Positives = 191/431 (44%), Gaps = 83/431 (19%)
Query: 23 VSLEAFRDCALQDLCLGQYPGVNDKWM-DVIASQGSSLLS------VDLSGSDVTDSGLI 75
+SL+ L D + QYP ++ ++ D+++ + S + LSG DVT + +
Sbjct: 55 LSLQGVDGHELVDASIEQYPHLSALYLFDIVSPEIVPFASLPGLSTIALSGQDVTATSYL 114
Query: 76 H--------------------LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
L D NL LD + QI+D + ++ L LTSL
Sbjct: 115 QQATNLTTVYLKTTHISDYSFLSDLKNLTHLDLSNN-QIAD--ISFIQDLKQLTSLGLAA 171
Query: 116 NNAITAQGMKA----------------FAGLINLVKL-DLERCTRIHGGLVNLKGLMKLE 158
N + G+K ++ L+N +L L R GL L+ L L
Sbjct: 172 NKIVDISGLKDLTTLNSLNLRSNAIDDYSVLLNFKELSQLTVSVREATGLAFLQDLRGLT 231
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
L++ + + I SD+ L L L L + ++++D IA L L +LT L+L ++
Sbjct: 232 YLDLSYNHWI--SDISVLRHLPKLTHLDLGSNQISD--IAVLSDLPQLTHLSLSANKISD 287
Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 278
L L L L L+++ +++D + L L++ N+++D + L+ LT L
Sbjct: 288 --LSVLQTLQGLESLDISANEIADIAI--LQNLQGLTQLDISSNDVSD--ISALQDLTTL 341
Query: 279 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
LN+ S + D + L GL L L++SD Q+ S + L GL L S+NLS+ +SD
Sbjct: 342 TQLNVSSNEVIDYSV--LQGLTELTNLDVSDNQL--SEISDLQGLHALTSLNLSYNQLSD 397
Query: 339 GS----LRKLAGLS----------------SLKSLNLDARQITDTGLAALTSLTGLTHLD 378
S L++LA L+ L +LNL QITD L+ L L GLT LD
Sbjct: 398 ISVLQDLKQLATLNLSYNPVSDIAVLQNFKDLTTLNLSFTQITD--LSTLQGLKGLTSLD 455
Query: 379 LFGARITDSGA 389
L +I D A
Sbjct: 456 LHSNQIRDISA 466
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 103/330 (31%), Positives = 154/330 (46%), Gaps = 42/330 (12%)
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
S+D+S +++ D + L++ L LD + +SD + L+ L+ LT L+ N I
Sbjct: 299 SLDISANEIADIAI--LQNLQGLTQLDIS-SNDVSD--ISALQDLTTLTQLNVSSNEVI- 352
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
GL L LD+ + +L+GL L SLN+ + SD+ L L
Sbjct: 353 --DYSVLQGLTELTNLDVSDNQL--SEISDLQGLHALTSLNLSYNQL---SDISVLQDLK 405
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
L +L +S + V+D IA L+ + LT LNL +T L +L L L L+L+ Q+
Sbjct: 406 QLATLNLSYNPVSD--IAVLQNFKDLTTLNLSFTQITD--LSTLQGLKGLTSLDLHSNQI 461
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITD-ECLVHLKGLTNLESLNLDSCGIGD-EGLVNLTG 298
D + L LN+ N+++D L +LKGL SLNL I D L +LT
Sbjct: 462 RD--ISALQDLKGLYRLNVSDNQLSDISALRNLKGLF---SLNLSINQISDIAALQDLTR 516
Query: 299 LCNLKCLE--LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS-LRKLAGLSSLKSLNL 355
L +L LSD V L GLT L S++L I+D S L+ + GL S L
Sbjct: 517 LTSLNASHNRLSDISV-------LQGLTRLNSLDLGANQIADISVLQNIPGLFS-----L 564
Query: 356 DARQITDTGLAALTSLTGLTHLDLFGARIT 385
D R + ++ GLT L+L +I+
Sbjct: 565 DLRF---SDVSVFQDFKGLTSLNLSSNQIS 591
>gi|298360700|gb|ADI77929.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 116/358 (32%), Positives = 171/358 (47%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNY 424
>gi|130774759|gb|ABO32394.1| InlA [Listeria monocytogenes]
gi|298360132|gb|ADI77645.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 116/358 (32%), Positives = 171/358 (47%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNY 424
>gi|112959536|gb|ABI27295.1| internalin A [Listeria monocytogenes]
gi|112959546|gb|ABI27300.1| internalin A [Listeria monocytogenes]
Length = 734
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 116/358 (32%), Positives = 171/358 (47%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 35 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 88
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 89 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL--SFGNQVTD--LKPL 140
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 141 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 193
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 194 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 247
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 248 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 305
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 306 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNY 361
>gi|299067411|emb|CBJ38610.1| leucine-rich-repeat type III effector protein (GALA6) [Ralstonia
solanacearum CMR15]
Length = 620
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 99/338 (29%), Positives = 151/338 (44%), Gaps = 3/338 (0%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+ L S++L +++ D G L L SLD + I + G E L + L L+ +
Sbjct: 259 APLTSLNLYYNEIGDDGAGALAASKTLTSLDASKN-GIGNAGAEALAKNTVLRELNLA-H 316
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N I G++A AG +L +LDL G + L G L SL + N I + L
Sbjct: 317 NMIGTPGVRALAGNTSLTELDLGGNRLGDAGALELAGNRSLLSLKVD-HNEIGGGGAQAL 375
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ L SL +S + + G L L++LNL C + + +L+ SL L LN
Sbjct: 376 ARHATLTSLDLSYNAIGLWGAGALGANTTLSVLNLSFCGIDSHSACALACNKSLAELYLN 435
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
+ D G + +K +L +L+L N I + L G L SL L GI D+G L
Sbjct: 436 GNWIGDYGALELAKNRTLTLLDLSRNGIRNAGAEALGGNQALTSLKLAGNGIDDDGAAAL 495
Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
L L+LS ++G+ G RHL+ L ++LS I L+ ++L +LN+
Sbjct: 496 ARHPRLTTLDLSRNRIGAEGARHLAQSATLAELDLSQNRIGPDGAEALSQSTALITLNVS 555
Query: 357 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRS 394
I + G +L LT LD I + GA L +
Sbjct: 556 HNAIGEAGARSLADSASLTSLDARRNGIGEDGAKVLEA 593
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 78/268 (29%), Positives = 117/268 (43%), Gaps = 26/268 (9%)
Query: 112 SFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDS 171
S R +T + +KA L L++ RCT G ++ +GL L +
Sbjct: 145 SVRFKGELTLEALKALP--PTLEHLEIGRCT---GSAISAEGLAHLAEMP---------- 189
Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
LKSL ++ ++ G L L L L GC + +L+A S+
Sbjct: 190 ----------LKSLNLTGIEIGVEGARTLAASTSLVSLTLIGCGIGDRAAQALAASQSIK 239
Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
L+L+ + DG + + L LNL +NEI D+ L L SL+ GIG+
Sbjct: 240 SLDLSVNMIGRDGAQALAA-APLTSLNLYYNEIGDDGAGALAASKTLTSLDASKNGIGNA 298
Query: 292 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 351
G L L+ L L+ +G+ G+R L+G T+L ++L + D +LAG SL
Sbjct: 299 GAEALAKNTVLRELNLAHNMIGTPGVRALAGNTSLTELDLGGNRLGDAGALELAGNRSLL 358
Query: 352 SLNLDARQITDTGLAALTSLTGLTHLDL 379
SL +D +I G AL LT LDL
Sbjct: 359 SLKVDHNEIGGGGAQALARHATLTSLDL 386
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 88/197 (44%), Gaps = 28/197 (14%)
Query: 220 CLDSLSALG-SLFYLNLNRC---QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 275
L++L AL +L +L + RC +S +G +++ LK LNL EI E L
Sbjct: 153 TLEALKALPPTLEHLEIGRCTGSAISAEGLAHLAEM-PLKSLNLTGIEIGVEGARTLAAS 211
Query: 276 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT----------- 324
T+L SL L CGIGD L ++K L+LS +G G + L+
Sbjct: 212 TSLVSLTLIGCGIGDRAAQALAASQSIKSLDLSVNMIGRDGAQALAAAPLTSLNLYYNEI 271
Query: 325 ------------NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 372
L S++ S GI + LA + L+ LNL I G+ AL T
Sbjct: 272 GDDGAGALAASKTLTSLDASKNGIGNAGAEALAKNTVLRELNLAHNMIGTPGVRALAGNT 331
Query: 373 GLTHLDLFGARITDSGA 389
LT LDL G R+ D+GA
Sbjct: 332 SLTELDLGGNRLGDAGA 348
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 77/273 (28%), Positives = 118/273 (43%), Gaps = 9/273 (3%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+SL +DL G+ + D+G + L +L SL + +I GG + L + LTSL N
Sbjct: 331 TSLTELDLGGNRLGDAGALELAGNRSLLSLKVDHN-EIGGGGAQALARHATLTSLDLSYN 389
Query: 117 NAITAQGMKAFAGLINLVKLDLERC---TRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
AI G A L L+L C + L K L +L LN W I D
Sbjct: 390 -AIGLWGAGALGANTTLSVLNLSFCGIDSHSACALACNKSLAELY-LNGNW---IGDYGA 444
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
L+ L L +S + + ++G L G Q LT L L G + +L+ L L
Sbjct: 445 LELAKNRTLTLLDLSRNGIRNAGAEALGGNQALTSLKLAGNGIDDDGAAALARHPRLTTL 504
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+L+R ++ +G ++ +L L+L N I + L T L +LN+ IG+ G
Sbjct: 505 DLSRNRIGAEGARHLAQSATLAELDLSQNRIGPDGAEALSQSTALITLNVSHNAIGEAGA 564
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 326
+L +L L+ +G G + L T L
Sbjct: 565 RSLADSASLTSLDARRNGIGEDGAKVLEANTRL 597
Score = 45.1 bits (105), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 66/133 (49%), Gaps = 7/133 (5%)
Query: 263 EITDECLVHLKGLTNLESLNLDSC---GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 319
E+T E L L LE L + C I EGL +L + LK L L+ ++G G R
Sbjct: 151 ELTLEALKALP--PTLEHLEIGRCTGSAISAEGLAHLAEMP-LKSLNLTGIEIGVEGART 207
Query: 320 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
L+ T+L S+ L GI D + + LA S+KSL+L I G AL + LT L+L
Sbjct: 208 LAASTSLVSLTLIGCGIGDRAAQALAASQSIKSLDLSVNMIGRDGAQALAAAP-LTSLNL 266
Query: 380 FGARITDSGAAYL 392
+ I D GA L
Sbjct: 267 YYNEIGDDGAGAL 279
>gi|313485077|gb|ADR53009.1| InlA [Listeria monocytogenes]
Length = 800
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 116/358 (32%), Positives = 171/358 (47%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNY 424
>gi|290981600|ref|XP_002673518.1| predicted protein [Naegleria gruberi]
gi|284087102|gb|EFC40774.1| predicted protein [Naegleria gruberi]
Length = 399
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/251 (28%), Positives = 115/251 (45%), Gaps = 24/251 (9%)
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
C + + ++ L NLK L I S + D YL + L LN C + L
Sbjct: 34 CRSVGVAILENFPYLENLKELIIDGSYIGDENAIYLSKFKCLKRLNACSCNLGPKSLQYF 93
Query: 225 SALGSLFYLNLNRCQ-----------------------LSDDGCEKFSKIGSLKVLNLGF 261
S L SL L L + LS D E+ S+I +L LNL
Sbjct: 94 SNLNSLEELTLPYNKVSGGLYHLKKLKGLKKLDLSKNVLSMDDIEQLSEISNLNHLNLNG 153
Query: 262 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 321
++ +C+ ++ L L +L L++ I + GL N++ + L L+L GS LRHL
Sbjct: 154 VDLGGKCMEYISKLP-LITLELEASNIDEIGLGNISQITTLSKLKLFGNNFGSESLRHLV 212
Query: 322 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 381
L+NL+ ++L++ I D + L+ L SL+ L+L I + G+ ++ L L+ L+L
Sbjct: 213 KLSNLKYLSLAYNKIDDEGVEYLSLLQSLEYLSLSYNNIGNDGVQFISKLENLSQLELIR 272
Query: 382 ARITDSGAAYL 392
RI + G ++
Sbjct: 273 NRIDERGVQFI 283
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/229 (26%), Positives = 115/229 (50%), Gaps = 1/229 (0%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
N ++ D++ LS ++NL L ++ + + Y+ L +TL LE + L ++S
Sbjct: 130 NVLSMDDIEQLSEISNLNHLNLNGVDLGGKCMEYISKLPLITL-ELEASNIDEIGLGNIS 188
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
+ +L L L + K+ +LK L+L +N+I DE + +L L +LE L+L
Sbjct: 189 QITTLSKLKLFGNNFGSESLRHLVKLSNLKYLSLAYNKIDDEGVEYLSLLQSLEYLSLSY 248
Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 345
IG++G+ ++ L NL LEL ++ G++ +S + NL +NL I + L+
Sbjct: 249 NNIGNDGVQFISKLENLSQLELIRNRIDERGVQFISKMKNLTKLNLGENPIRNIGALYLS 308
Query: 346 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRS 394
+ LK L+LD +I D + L + L +L++ ++++ L+
Sbjct: 309 KMKQLKGLDLDGTKIDDFSIEHLCLMKNLQYLNIERTNLSETKVETLKE 357
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 109/208 (52%), Gaps = 2/208 (0%)
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
M+ +S L L +L++ S + + G+ + + L+ L L G + L L L +L Y
Sbjct: 161 MEYISKLP-LITLELEASNIDEIGLGNISQITTLSKLKLFGNNFGSESLRHLVKLSNLKY 219
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
L+L ++ D+G E S + SL+ L+L +N I ++ + + L NL L L I + G
Sbjct: 220 LSLAYNKIDDEGVEYLSLLQSLEYLSLSYNNIGNDGVQFISKLENLSQLELIRNRIDERG 279
Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
+ ++ + NL L L + + + G +LS + L+ ++L T I D S+ L + +L+
Sbjct: 280 VQFISKMKNLTKLNLGENPIRNIGALYLSKMKQLKGLDLDGTKIDDFSIEHLCLMKNLQY 339
Query: 353 LNLDARQITDTGLAALT-SLTGLTHLDL 379
LN++ +++T + L SL + +L+L
Sbjct: 340 LNIERTNLSETKVETLKESLKLVKNLEL 367
>gi|320168649|gb|EFW45548.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 977
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 92/322 (28%), Positives = 131/322 (40%), Gaps = 35/322 (10%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
QI+ GLS LT L + N I++ AF GL L ++DL I
Sbjct: 93 QITSISANAFTGLSALTYLVLKENE-ISSISANAFTGLSALKEVDLSNNRIIDLPTAAFA 151
Query: 153 GLMKLESLNIK--WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
GL ++ +L + N I + + +GLT LK L + + ++ A G LT L
Sbjct: 152 GLPQMSTLRLSRNQFNSIPSTAIT--TGLTALKELYLDANNISSISTAAFTGFPALTYLY 209
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
L P+T ++ + L L +L L Q+S F+ + +L L+L N+I+
Sbjct: 210 LADNPITDIPANTFADLTELRHLYLRNNQISSVSATAFAGLSALNYLDLSMNKISSLSAS 269
Query: 271 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ------------------- 311
GLT L L L S + + T L L+ L LS Q
Sbjct: 270 VFTGLTALSILYLQSNQLSSIPASSFTDLAALQHLYLSSNQFTNLPAAAFTGLDALIVLW 329
Query: 312 --------VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 363
V +S L LS L NL+ LS T I+ S AGL++L L L I
Sbjct: 330 LSGNPLTSVPTSALTSLSALRNLD---LSSTKITSISANAFAGLNALTVLALHYNPIASI 386
Query: 364 GLAALTSLTGLTHLDLFGARIT 385
+A T LT LT L L +T
Sbjct: 387 SGSAFTGLTALTALHLSNTPLT 408
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 80/184 (43%), Gaps = 1/184 (0%)
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 266
T L+L+ +T+ +++ + L +L +L L Q++ F+ + +L L L NEI+
Sbjct: 61 THLSLQSNQITSISVNAFTGLTALIWLYLTDNQITSISANAFTGLSALTYLVLKENEISS 120
Query: 267 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS-SGLRHLSGLTN 325
GL+ L+ ++L + I D GL + L LS Q S +GLT
Sbjct: 121 ISANAFTGLSALKEVDLSNNRIIDLPTAAFAGLPQMSTLRLSRNQFNSIPSTAITTGLTA 180
Query: 326 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
L+ + L IS S G +L L L ITD LT L HL L +I+
Sbjct: 181 LKELYLDANNISSISTAAFTGFPALTYLYLADNPITDIPANTFADLTELRHLYLRNNQIS 240
Query: 386 DSGA 389
A
Sbjct: 241 SVSA 244
Score = 39.3 bits (90), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 48/104 (46%)
Query: 276 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 335
+N L+L S I + TGL L L L+D Q+ S +GL+ L + L
Sbjct: 58 SNTTHLSLQSNQITSISVNAFTGLTALIWLYLTDNQITSISANAFTGLSALTYLVLKENE 117
Query: 336 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
IS S GLS+LK ++L +I D AA L ++ L L
Sbjct: 118 ISSISANAFTGLSALKEVDLSNNRIIDLPTAAFAGLPQMSTLRL 161
>gi|294358387|gb|ADE73846.1| InlA [Listeria monocytogenes]
Length = 800
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 106/329 (32%), Positives = 167/329 (50%), Gaps = 39/329 (11%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL+ L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLISLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
L GL L LEL++ Q+ + +S L NL + L F ISD + ++ L+ L+ L
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRL 366
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGA 382
+++D ++SL LT+++ A
Sbjct: 367 FFYNNKVSD-----VSSLANLTNINWLSA 390
>gi|298360122|gb|ADI77640.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 116/358 (32%), Positives = 171/358 (47%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNY 424
>gi|130774769|gb|ABO32399.1| InlA [Listeria monocytogenes]
gi|130774773|gb|ABO32401.1| InlA [Listeria monocytogenes]
gi|167861932|gb|ACA05665.1| InlA [Listeria monocytogenes]
gi|167861992|gb|ACA05695.1| InlA [Listeria monocytogenes]
gi|167861994|gb|ACA05696.1| InlA [Listeria monocytogenes]
gi|167861998|gb|ACA05698.1| InlA [Listeria monocytogenes]
gi|167862004|gb|ACA05701.1| InlA [Listeria monocytogenes]
gi|167862034|gb|ACA05716.1| InlA [Listeria monocytogenes]
gi|194326169|emb|CAQ77243.1| internalin A [Listeria monocytogenes]
gi|298359894|gb|ADI77526.1| internalin A [Listeria monocytogenes]
gi|298360034|gb|ADI77596.1| internalin A [Listeria monocytogenes]
gi|298360110|gb|ADI77634.1| internalin A [Listeria monocytogenes]
gi|298360112|gb|ADI77635.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 116/358 (32%), Positives = 171/358 (47%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNY 424
>gi|427793023|gb|JAA61963.1| Putative f-box and leucine-rich repeat protein 14a, partial
[Rhipicephalus pulchellus]
Length = 372
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 91/312 (29%), Positives = 149/312 (47%), Gaps = 53/312 (16%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHL--KDCSNLQSLDF 88
+L +L L + D + IA L +DL G +DVT++GL HL NL+SL+
Sbjct: 82 SLTELNLSMCKQITDNSLGRIAQHLQGLERLDLGGCTDVTNTGL-HLIAWGLHNLRSLNL 140
Query: 89 NFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGL 148
C +SD G+ HL G++ N+AI G + L L L+ C ++
Sbjct: 141 RSCRGVSDPGISHLAGINP--------NSAI---------GTLRLESLCLQDCQKLTDDA 183
Query: 149 VNLK--GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYL-KGLQ 204
+ GL L SLN+ +C +TD+ +K + + L+ L + SC ++D G+AYL +G
Sbjct: 184 LRFISIGLQDLRSLNLSFCASVTDAGLKHAARMARLRELNLRSCDNISDLGLAYLAEGGS 243
Query: 205 KLTLLNLEGCPVTA--ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 262
+++ L++ C L + L L L+LN C +SDDG + +
Sbjct: 244 RISTLDVSFCDKVGDQGLLHASQGLFQLRSLSLNACPVSDDGIGRVA------------- 290
Query: 263 EITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRH 319
+ L +L++L+L CG + D+GL + L L+C++L T++ + GL
Sbjct: 291 ----------RSLGDLQTLHLGQCGRVTDKGLSLIADHLKQLRCIDLYGCTKITTVGLEK 340
Query: 320 LSGLTNLESINL 331
L L NL +NL
Sbjct: 341 LMQLPNLGVLNL 352
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 96/303 (31%), Positives = 154/303 (50%), Gaps = 24/303 (7%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFA-GLINL 133
++ NL+SL+ C ++D L H ++ + +LT L+ IT + A L L
Sbjct: 50 IQGVPNLESLNMIGCFNLTDAWLNHAFVQDVHSLTELNLSMCKQITDNSLGRIAQHLQGL 109
Query: 134 VKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLT--------NLK 183
+LDL CT + ++L GL L SLN++ C ++D + L+G+ L+
Sbjct: 110 ERLDLGGCTDVTNTGLHLIAWGLHNLRSLNLRSCRGVSDPGISHLAGINPNSAIGTLRLE 169
Query: 184 SLQIS-CSKVTDSGIAYLK-GLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-Q 239
SL + C K+TD + ++ GLQ L LNL C VT A L + + L LNL C
Sbjct: 170 SLCLQDCQKLTDDALRFISIGLQDLRSLNLSFCASVTDAGLKHAARMARLRELNLRSCDN 229
Query: 240 LSDDGCEKFSKIGS-LKVLNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGLVNL 296
+SD G ++ GS + L++ F +++ D+ L+H +GL L SL+L++C + D+G+ +
Sbjct: 230 ISDLGLAYLAEGGSRISTLDVSFCDKVGDQGLLHASQGLFQLRSLSLNACPVSDDGIGRV 289
Query: 297 T-GLCNLKCLELSDT-QVGSSGLRHLS-GLTNLESINL-SFTGISDGSLRKLAGLSSLKS 352
L +L+ L L +V GL ++ L L I+L T I+ L KL L +L
Sbjct: 290 ARSLGDLQTLHLGQCGRVTDKGLSLIADHLKQLRCIDLYGCTKITTVGLEKLMQLPNLGV 349
Query: 353 LNL 355
LNL
Sbjct: 350 LNL 352
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 90/288 (31%), Positives = 139/288 (48%), Gaps = 50/288 (17%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKP--LSGLTNLKSLQIS-CSKVTDSGIA----YLKGL 203
++G+ LESLN+ C +TD+ + + + +L L +S C ++TD+ + +L+GL
Sbjct: 50 IQGVPNLESLNMIGCFNLTDAWLNHAFVQDVHSLTELNLSMCKQITDNSLGRIAQHLQGL 109
Query: 204 QKLTL-----------------------LNLEGCPVTA-------ACLDSLSALGSLFY- 232
++L L LNL C + A ++ SA+G+L
Sbjct: 110 ERLDLGGCTDVTNTGLHLIAWGLHNLRSLNLRSCRGVSDPGISHLAGINPNSAIGTLRLE 169
Query: 233 -LNLNRCQLSDDGCEKFSKIG--SLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-G 287
L L CQ D +F IG L+ LNL F +TD L H + L LNL SC
Sbjct: 170 SLCLQDCQKLTDDALRFISIGLQDLRSLNLSFCASVTDAGLKHAARMARLRELNLRSCDN 229
Query: 288 IGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLS-GLTNLESINLSFTGISDGSLRKL 344
I D GL L G + L++S +VG GL H S GL L S++L+ +SD + ++
Sbjct: 230 ISDLGLAYLAEGGSRISTLDVSFCDKVGDQGLLHASQGLFQLRSLSLNACPVSDDGIGRV 289
Query: 345 A-GLSSLKSLNL-DARQITDTGLAALT-SLTGLTHLDLFG-ARITDSG 388
A L L++L+L ++TD GL+ + L L +DL+G +IT G
Sbjct: 290 ARSLGDLQTLHLGQCGRVTDKGLSLIADHLKQLRCIDLYGCTKITTVG 337
>gi|112961622|gb|ABI28434.1| internalin A [Listeria monocytogenes]
Length = 751
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 116/358 (32%), Positives = 171/358 (47%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 49 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 102
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 103 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQL--SFGNQVTD--LKPL 154
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 155 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 207
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 208 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 261
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 262 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 319
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 320 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNY 375
>gi|298359892|gb|ADI77525.1| internalin A [Listeria monocytogenes]
gi|298360422|gb|ADI77790.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 116/358 (32%), Positives = 171/358 (47%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNY 424
>gi|226223065|ref|YP_002757172.1| Internalin A [Listeria monocytogenes serotype 4b str. CLIP 80459]
gi|386731210|ref|YP_006204706.1| internalin A [Listeria monocytogenes 07PF0776]
gi|406703224|ref|YP_006753578.1| internalin A (LPXTG motif) [Listeria monocytogenes L312]
gi|167861892|gb|ACA05645.1| InlA [Listeria monocytogenes]
gi|167861914|gb|ACA05656.1| InlA [Listeria monocytogenes]
gi|167861978|gb|ACA05688.1| InlA [Listeria monocytogenes]
gi|194239396|emb|CAQ76838.1| internalin A [Listeria monocytogenes]
gi|225875527|emb|CAS04230.1| Internalin A [Listeria monocytogenes serotype 4b str. CLIP 80459]
gi|298359780|gb|ADI77469.1| internalin A [Listeria monocytogenes]
gi|384389968|gb|AFH79038.1| internalin A [Listeria monocytogenes 07PF0776]
gi|406360254|emb|CBY66527.1| internalin A (LPXTG motif) [Listeria monocytogenes L312]
Length = 800
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 116/358 (32%), Positives = 171/358 (47%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNY 424
>gi|112959518|gb|ABI27286.1| internalin A [Listeria monocytogenes]
gi|112959520|gb|ABI27287.1| internalin A [Listeria monocytogenes]
Length = 737
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 116/358 (32%), Positives = 171/358 (47%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 35 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 88
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 89 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQL--SFGNQVTD--LKPL 140
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 141 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 193
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 194 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 247
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 248 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 305
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 306 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNY 361
>gi|322952085|gb|ADX21042.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 116/358 (32%), Positives = 171/358 (47%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNY 424
>gi|254854324|ref|ZP_05243672.1| internalin A [Listeria monocytogenes FSL R2-503]
gi|300766414|ref|ZP_07076370.1| internalin A precursor [Listeria monocytogenes FSL N1-017]
gi|404279991|ref|YP_006680889.1| internalin A [Listeria monocytogenes SLCC2755]
gi|404285805|ref|YP_006692391.1| internalin A [Listeria monocytogenes serotype 7 str. SLCC2482]
gi|405754532|ref|YP_006677996.1| internalin A [Listeria monocytogenes SLCC2540]
gi|130774761|gb|ABO32395.1| InlA [Listeria monocytogenes]
gi|130774765|gb|ABO32397.1| InlA [Listeria monocytogenes]
gi|130774775|gb|ABO32402.1| InlA [Listeria monocytogenes]
gi|150371872|dbj|BAF65725.1| internalin A [Listeria monocytogenes]
gi|150371878|dbj|BAF65728.1| internalin A [Listeria monocytogenes]
gi|150371880|dbj|BAF65729.1| internalin A [Listeria monocytogenes]
gi|150371882|dbj|BAF65730.1| internalin A [Listeria monocytogenes]
gi|150371884|dbj|BAF65731.1| internalin A [Listeria monocytogenes]
gi|150371886|dbj|BAF65732.1| internalin A [Listeria monocytogenes]
gi|167861936|gb|ACA05667.1| InlA [Listeria monocytogenes]
gi|167861950|gb|ACA05674.1| InlA [Listeria monocytogenes]
gi|167861974|gb|ACA05686.1| InlA [Listeria monocytogenes]
gi|167861990|gb|ACA05694.1| InlA [Listeria monocytogenes]
gi|194239386|emb|CAQ76833.1| internalin A [Listeria monocytogenes]
gi|194239390|emb|CAQ76835.1| internalin A [Listeria monocytogenes]
gi|194239398|emb|CAQ76839.1| internalin A [Listeria monocytogenes]
gi|194326159|emb|CAQ77238.1| internalin A [Listeria monocytogenes]
gi|223006782|gb|ACM69348.1| internalin A [Listeria monocytogenes]
gi|258607720|gb|EEW20328.1| internalin A [Listeria monocytogenes FSL R2-503]
gi|290350822|dbj|BAI78332.1| internalin A [Listeria monocytogenes]
gi|290350824|dbj|BAI78333.1| internalin A [Listeria monocytogenes]
gi|298359734|gb|ADI77446.1| internalin A [Listeria monocytogenes]
gi|298359740|gb|ADI77449.1| internalin A [Listeria monocytogenes]
gi|298359774|gb|ADI77466.1| internalin A [Listeria monocytogenes]
gi|298359822|gb|ADI77490.1| internalin A [Listeria monocytogenes]
gi|298359826|gb|ADI77492.1| internalin A [Listeria monocytogenes]
gi|298359830|gb|ADI77494.1| internalin A [Listeria monocytogenes]
gi|298359834|gb|ADI77496.1| internalin A [Listeria monocytogenes]
gi|298359836|gb|ADI77497.1| internalin A [Listeria monocytogenes]
gi|298359846|gb|ADI77502.1| internalin A [Listeria monocytogenes]
gi|298359848|gb|ADI77503.1| internalin A [Listeria monocytogenes]
gi|298359854|gb|ADI77506.1| internalin A [Listeria monocytogenes]
gi|298359856|gb|ADI77507.1| internalin A [Listeria monocytogenes]
gi|298359868|gb|ADI77513.1| internalin A [Listeria monocytogenes]
gi|298359870|gb|ADI77514.1| internalin A [Listeria monocytogenes]
gi|298359888|gb|ADI77523.1| internalin A [Listeria monocytogenes]
gi|298359920|gb|ADI77539.1| internalin A [Listeria monocytogenes]
gi|298359954|gb|ADI77556.1| internalin A [Listeria monocytogenes]
gi|298359968|gb|ADI77563.1| internalin A [Listeria monocytogenes]
gi|298359972|gb|ADI77565.1| internalin A [Listeria monocytogenes]
gi|298359984|gb|ADI77571.1| internalin A [Listeria monocytogenes]
gi|298359998|gb|ADI77578.1| internalin A [Listeria monocytogenes]
gi|298360002|gb|ADI77580.1| internalin A [Listeria monocytogenes]
gi|298360006|gb|ADI77582.1| internalin A [Listeria monocytogenes]
gi|298360040|gb|ADI77599.1| internalin A [Listeria monocytogenes]
gi|298360042|gb|ADI77600.1| internalin A [Listeria monocytogenes]
gi|298360044|gb|ADI77601.1| internalin A [Listeria monocytogenes]
gi|298360050|gb|ADI77604.1| internalin A [Listeria monocytogenes]
gi|298360080|gb|ADI77619.1| internalin A [Listeria monocytogenes]
gi|298360090|gb|ADI77624.1| internalin A [Listeria monocytogenes]
gi|298360100|gb|ADI77629.1| internalin A [Listeria monocytogenes]
gi|298360126|gb|ADI77642.1| internalin A [Listeria monocytogenes]
gi|298360150|gb|ADI77654.1| internalin A [Listeria monocytogenes]
gi|298360156|gb|ADI77657.1| internalin A [Listeria monocytogenes]
gi|298360166|gb|ADI77662.1| internalin A [Listeria monocytogenes]
gi|298360188|gb|ADI77673.1| internalin A [Listeria monocytogenes]
gi|298360190|gb|ADI77674.1| internalin A [Listeria monocytogenes]
gi|298360194|gb|ADI77676.1| internalin A [Listeria monocytogenes]
gi|298360220|gb|ADI77689.1| internalin A [Listeria monocytogenes]
gi|298360222|gb|ADI77690.1| internalin A [Listeria monocytogenes]
gi|298360238|gb|ADI77698.1| internalin A [Listeria monocytogenes]
gi|298360246|gb|ADI77702.1| internalin A [Listeria monocytogenes]
gi|298360260|gb|ADI77709.1| internalin A [Listeria monocytogenes]
gi|298360264|gb|ADI77711.1| internalin A [Listeria monocytogenes]
gi|298360266|gb|ADI77712.1| internalin A [Listeria monocytogenes]
gi|298360294|gb|ADI77726.1| internalin A [Listeria monocytogenes]
gi|298360298|gb|ADI77728.1| internalin A [Listeria monocytogenes]
gi|298360312|gb|ADI77735.1| internalin A [Listeria monocytogenes]
gi|298360318|gb|ADI77738.1| internalin A [Listeria monocytogenes]
gi|298360356|gb|ADI77757.1| internalin A [Listeria monocytogenes]
gi|298360368|gb|ADI77763.1| internalin A [Listeria monocytogenes]
gi|298360396|gb|ADI77777.1| internalin A [Listeria monocytogenes]
gi|298360398|gb|ADI77778.1| internalin A [Listeria monocytogenes]
gi|298360400|gb|ADI77779.1| internalin A [Listeria monocytogenes]
gi|298360428|gb|ADI77793.1| internalin A [Listeria monocytogenes]
gi|298360434|gb|ADI77796.1| internalin A [Listeria monocytogenes]
gi|298360448|gb|ADI77803.1| internalin A [Listeria monocytogenes]
gi|298360462|gb|ADI77810.1| internalin A [Listeria monocytogenes]
gi|298360498|gb|ADI77828.1| internalin A [Listeria monocytogenes]
gi|298360502|gb|ADI77830.1| internalin A [Listeria monocytogenes]
gi|298360510|gb|ADI77834.1| internalin A [Listeria monocytogenes]
gi|298360514|gb|ADI77836.1| internalin A [Listeria monocytogenes]
gi|298360558|gb|ADI77858.1| internalin A [Listeria monocytogenes]
gi|298360560|gb|ADI77859.1| internalin A [Listeria monocytogenes]
gi|298360566|gb|ADI77862.1| internalin A [Listeria monocytogenes]
gi|298360586|gb|ADI77872.1| internalin A [Listeria monocytogenes]
gi|298360614|gb|ADI77886.1| internalin A [Listeria monocytogenes]
gi|298360630|gb|ADI77894.1| internalin A [Listeria monocytogenes]
gi|298360638|gb|ADI77898.1| internalin A [Listeria monocytogenes]
gi|298360652|gb|ADI77905.1| internalin A [Listeria monocytogenes]
gi|298360680|gb|ADI77919.1| internalin A [Listeria monocytogenes]
gi|298360682|gb|ADI77920.1| internalin A [Listeria monocytogenes]
gi|298360694|gb|ADI77926.1| internalin A [Listeria monocytogenes]
gi|298360704|gb|ADI77931.1| internalin A [Listeria monocytogenes]
gi|298360706|gb|ADI77932.1| internalin A [Listeria monocytogenes]
gi|300512880|gb|EFK39971.1| internalin A precursor [Listeria monocytogenes FSL N1-017]
gi|302034315|gb|ADK92311.1| internalin A [Listeria monocytogenes]
gi|302034317|gb|ADK92312.1| internalin A [Listeria monocytogenes]
gi|404223732|emb|CBY75094.1| internalin A (LPXTG motif) [Listeria monocytogenes SLCC2540]
gi|404226626|emb|CBY48031.1| internalin A (LPXTG motif) [Listeria monocytogenes SLCC2755]
gi|404244734|emb|CBY02959.1| internalin A (LPXTG motif) [Listeria monocytogenes serotype 7 str.
SLCC2482]
Length = 800
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 116/358 (32%), Positives = 171/358 (47%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNY 424
>gi|112961697|gb|ABI28484.1| internalin A [Listeria monocytogenes]
gi|112961709|gb|ABI28492.1| internalin A [Listeria monocytogenes]
gi|112961730|gb|ABI28506.1| internalin A [Listeria monocytogenes]
gi|112961760|gb|ABI28526.1| internalin A [Listeria monocytogenes]
Length = 751
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 116/358 (32%), Positives = 171/358 (47%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 49 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 102
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 103 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 154
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 155 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 207
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 208 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 261
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 262 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 319
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 320 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNY 375
>gi|298360360|gb|ADI77759.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 116/358 (32%), Positives = 171/358 (47%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNY 424
>gi|254825753|ref|ZP_05230754.1| internalin A [Listeria monocytogenes FSL J1-194]
gi|255521302|ref|ZP_05388539.1| internalin A [Listeria monocytogenes FSL J1-175]
gi|130774771|gb|ABO32400.1| InlA [Listeria monocytogenes]
gi|130774777|gb|ABO32403.1| InlA [Listeria monocytogenes]
gi|130774779|gb|ABO32404.1| InlA [Listeria monocytogenes]
gi|150371874|dbj|BAF65726.1| internalin A [Listeria monocytogenes]
gi|150371876|dbj|BAF65727.1| internalin A [Listeria monocytogenes]
gi|223006790|gb|ACM69352.1| internalin A [Listeria monocytogenes]
gi|290350838|dbj|BAI78340.1| internalin A [Listeria monocytogenes]
gi|293594997|gb|EFG02758.1| internalin A [Listeria monocytogenes FSL J1-194]
gi|298359742|gb|ADI77450.1| internalin A [Listeria monocytogenes]
gi|298359744|gb|ADI77451.1| internalin A [Listeria monocytogenes]
gi|298359756|gb|ADI77457.1| internalin A [Listeria monocytogenes]
gi|298359790|gb|ADI77474.1| internalin A [Listeria monocytogenes]
gi|298359872|gb|ADI77515.1| internalin A [Listeria monocytogenes]
gi|298359880|gb|ADI77519.1| internalin A [Listeria monocytogenes]
gi|298359942|gb|ADI77550.1| internalin A [Listeria monocytogenes]
gi|298359946|gb|ADI77552.1| internalin A [Listeria monocytogenes]
gi|298360032|gb|ADI77595.1| internalin A [Listeria monocytogenes]
gi|298360064|gb|ADI77611.1| internalin A [Listeria monocytogenes]
gi|298360114|gb|ADI77636.1| internalin A [Listeria monocytogenes]
gi|298360202|gb|ADI77680.1| internalin A [Listeria monocytogenes]
gi|298360282|gb|ADI77720.1| internalin A [Listeria monocytogenes]
gi|298360284|gb|ADI77721.1| internalin A [Listeria monocytogenes]
gi|298360314|gb|ADI77736.1| internalin A [Listeria monocytogenes]
gi|298360330|gb|ADI77744.1| internalin A [Listeria monocytogenes]
gi|298360346|gb|ADI77752.1| internalin A [Listeria monocytogenes]
gi|298360410|gb|ADI77784.1| internalin A [Listeria monocytogenes]
gi|298360420|gb|ADI77789.1| internalin A [Listeria monocytogenes]
gi|298360440|gb|ADI77799.1| internalin A [Listeria monocytogenes]
gi|298360454|gb|ADI77806.1| internalin A [Listeria monocytogenes]
gi|298360470|gb|ADI77814.1| internalin A [Listeria monocytogenes]
gi|298360494|gb|ADI77826.1| internalin A [Listeria monocytogenes]
gi|298360506|gb|ADI77832.1| internalin A [Listeria monocytogenes]
gi|298360604|gb|ADI77881.1| internalin A [Listeria monocytogenes]
gi|298360610|gb|ADI77884.1| internalin A [Listeria monocytogenes]
gi|298360612|gb|ADI77885.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 116/358 (32%), Positives = 171/358 (47%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNY 424
>gi|112961619|gb|ABI28432.1| internalin A [Listeria monocytogenes]
gi|112961637|gb|ABI28444.1| internalin A [Listeria monocytogenes]
gi|112961655|gb|ABI28456.1| internalin A [Listeria monocytogenes]
gi|112961658|gb|ABI28458.1| internalin A [Listeria monocytogenes]
gi|112961766|gb|ABI28530.1| internalin A [Listeria monocytogenes]
Length = 751
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 116/358 (32%), Positives = 171/358 (47%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 49 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 102
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 103 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 154
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 155 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 207
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 208 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 261
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 262 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 319
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 320 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNY 375
>gi|112961694|gb|ABI28482.1| internalin A [Listeria monocytogenes]
gi|112961706|gb|ABI28490.1| internalin A [Listeria monocytogenes]
gi|112961763|gb|ABI28528.1| internalin A [Listeria monocytogenes]
Length = 751
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 116/358 (32%), Positives = 171/358 (47%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 49 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 102
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 103 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 154
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 155 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 207
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 208 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 261
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 262 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 319
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 320 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNY 375
>gi|22347548|gb|AAM95919.1| internalin A precursor [Listeria monocytogenes]
gi|22347558|gb|AAM95924.1| internalin A precursor [Listeria monocytogenes]
gi|22347560|gb|AAM95925.1| internalin A precursor [Listeria monocytogenes]
Length = 744
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 116/358 (32%), Positives = 171/358 (47%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 42 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 95
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 96 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 147
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 148 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 200
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 201 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 254
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 255 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 312
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 313 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNY 368
>gi|223698871|gb|ACN19154.1| internalin A [Listeria monocytogenes]
Length = 715
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 116/358 (32%), Positives = 172/358 (48%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 13 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 66
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 67 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 118
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 119 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 171
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 172 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 225
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 226 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 283
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 284 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNY 339
>gi|219821366|gb|ACL37822.1| internalin A [Listeria monocytogenes]
Length = 742
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 116/358 (32%), Positives = 171/358 (47%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL--SFGNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 252
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 253 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 310
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 311 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNY 366
>gi|168704644|ref|ZP_02736921.1| hypothetical protein GobsU_34225 [Gemmata obscuriglobus UQM 2246]
Length = 952
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 118/345 (34%), Positives = 170/345 (49%), Gaps = 32/345 (9%)
Query: 46 DKWMDVIASQ---GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
DK ++++ +Q G SL + LS +D+ D L L + L+ LD + C +SD L
Sbjct: 619 DKRLEMLWTQIRRGLSLRRLVLSKTDIAD--LSPLAPLTALEELDLSGCAGVSD-----L 671
Query: 103 RGLSNLTSLSFRR-NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
L+NLT+L F + + A L L LDL C + L L L LE LN
Sbjct: 672 SPLANLTALRFLDLSGCAGGADLSPLANLTALRFLDLSGCAGV-SDLAPLANLTALEGLN 730
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAA 219
++ C + SD+ PL+ LT L+ L +S C+ D S +A L GL+ LNL GC +
Sbjct: 731 LRGCAGV--SDLSPLANLTGLRHLNLSGCAGWADLSPLANLTGLRH---LNLNGC-TGVS 784
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNL 278
L L+ L +L L+L+ C D + + +L+ L+L G ++D L L T L
Sbjct: 785 DLSPLAPLTALEELDLSGCAGVSD-LSPLANLTALEGLDLSGCAGVSD--LSPLAPHTAL 841
Query: 279 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGIS 337
L+L C G L L L+ L+LS G S L L+ LT LE ++LS G+S
Sbjct: 842 RFLDLSGCA-GVSCLSPLAPHTALRFLDLSGC-AGVSDLSPLANLTALEDLDLSGCAGVS 899
Query: 338 DGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFG 381
D L LA L++L+ L+L + D L+ L LT L LDL G
Sbjct: 900 D--LSPLANLTALEGLDLSGCTGVLD--LSPLAPLTALQFLDLGG 940
>gi|46445898|ref|YP_007263.1| hypothetical protein pc0264 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46399539|emb|CAF22988.1| hypothetical protein pc0264 [Candidatus Protochlamydia amoebophila
UWE25]
Length = 1805
Score = 79.7 bits (195), Expect = 2e-12, Method: Composition-based stats.
Identities = 107/388 (27%), Positives = 188/388 (48%), Gaps = 66/388 (17%)
Query: 44 VNDKWMDVIA---SQGSSLLSVDLSGSDVTDSGLIHLKDC--SNLQSLDFNF-CIQISDG 97
++DK + IA + ++L + L+G+ ++D G+ SN +D + QISD
Sbjct: 1408 ISDKGAEAIAQSLASNAALWKLSLNGNQISDQGMEAFAQALASNTILMDLSLNGNQISDQ 1467
Query: 98 GLEHL-RGLSNLTSLSFR--RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGL 154
G++ + L++ TS+ N I+ + M+AFA L T I G+++L G
Sbjct: 1468 GMKAFAQALASNTSIRVLSLNENQISDKEMEAFAQA-------LASNTSI--GVLSLNG- 1517
Query: 155 MKLESLNIKWCNCITDSDM----KPLSGLTNLKSLQISCSKVTDSGI-AYLKGLQKLT-- 207
N I+D M + L+ T L++L++ ++++D G+ A+ + L T
Sbjct: 1518 -----------NQISDKGMEAFAQALASNTTLRTLRLDNNQISDKGMEAFAQALASNTSI 1566
Query: 208 -LLNLEGCPVTAACLDSLS-ALGS---LFYLNLNRCQLSDDGCEKFSKI----GSLKVLN 258
+L+L G ++ + +L+ AL S L L+LN Q+SD G E F++ +L+ L
Sbjct: 1567 GVLSLNGNQISDKGIVALAQALASNTILSELSLNENQISDQGMEAFAQALASNTALRALR 1626
Query: 259 LGFNEITDECL----VHLKGLTNLESLNLDSCGIGDEGL----VNLTGLCNLKCLELSDT 310
L N+I+D+ + L T L L+L+ I D+G+ L L+ L L +
Sbjct: 1627 LDNNQISDKGMEAFAQALASNTILSELSLNGNQISDQGMEAFAQALASNITLRALRLDNN 1686
Query: 311 QVGSSGL----RHLSGLTNLESINLSFTGISDGSL----RKLAGLSSLKSLNLDARQITD 362
Q+ G+ + L+ T L ++ L ISD + + +A +S++ L+L+ QI+D
Sbjct: 1687 QISDQGMEAFAQTLASNTTLRALRLDNNQISDKGMEAFAQTMASNTSIRVLSLNGNQISD 1746
Query: 363 TGLAA----LTSLTGLTHLDLFGARITD 386
G+ A L S T L L L G +I+D
Sbjct: 1747 QGMKAFAQTLVSNTILMDLSLNGNQISD 1774
Score = 58.9 bits (141), Expect = 4e-06, Method: Composition-based stats.
Identities = 71/245 (28%), Positives = 119/245 (48%), Gaps = 32/245 (13%)
Query: 176 LSGLTNLKSLQISCSKVTDSG---IAY-LKGLQKLTLLNLEGCPVT----AACLDSLSAL 227
L+ T LKSL + ++++D G IA L L L L G ++ A SL++
Sbjct: 1364 LASNTTLKSLDLDRNQISDKGAEAIAQALASNAALETLWLNGNQISDKGAEAIAQSLASN 1423
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGS----LKVLNLGFNEITDECL----VHLKGLTNLE 279
+L+ L+LN Q+SD G E F++ + L L+L N+I+D+ + L T++
Sbjct: 1424 AALWKLSLNGNQISDQGMEAFAQALASNTILMDLSLNGNQISDQGMKAFAQALASNTSIR 1483
Query: 280 SLNLDSCGIGDEGL----VNLTGLCNLKCLELSDTQVGSSGL----RHLSGLTNLESINL 331
L+L+ I D+ + L ++ L L+ Q+ G+ + L+ T L ++ L
Sbjct: 1484 VLSLNENQISDKEMEAFAQALASNTSIGVLSLNGNQISDKGMEAFAQALASNTTLRTLRL 1543
Query: 332 SFTGISDGSL----RKLAGLSSLKSLNLDARQITDTGLA----ALTSLTGLTHLDLFGAR 383
ISD + + LA +S+ L+L+ QI+D G+ AL S T L+ L L +
Sbjct: 1544 DNNQISDKGMEAFAQALASNTSIGVLSLNGNQISDKGIVALAQALASNTILSELSLNENQ 1603
Query: 384 ITDSG 388
I+D G
Sbjct: 1604 ISDQG 1608
Score = 49.7 bits (117), Expect = 0.003, Method: Composition-based stats.
Identities = 56/190 (29%), Positives = 93/190 (48%), Gaps = 24/190 (12%)
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKI----GSLKVLNLGFNEITD---ECLVH-LKG 274
SL++ +L L+L+R Q+SD G E ++ +L+ L L N+I+D E + L
Sbjct: 1363 SLASNTTLKSLDLDRNQISDKGAEAIAQALASNAALETLWLNGNQISDKGAEAIAQSLAS 1422
Query: 275 LTNLESLNLDSCGIGDEGL----VNLTGLCNLKCLELSDTQVGSSGLR----HLSGLTNL 326
L L+L+ I D+G+ L L L L+ Q+ G++ L+ T++
Sbjct: 1423 NAALWKLSLNGNQISDQGMEAFAQALASNTILMDLSLNGNQISDQGMKAFAQALASNTSI 1482
Query: 327 ESINLSFTGISDGSL----RKLAGLSSLKSLNLDARQITDTGL----AALTSLTGLTHLD 378
++L+ ISD + + LA +S+ L+L+ QI+D G+ AL S T L L
Sbjct: 1483 RVLSLNENQISDKEMEAFAQALASNTSIGVLSLNGNQISDKGMEAFAQALASNTTLRTLR 1542
Query: 379 LFGARITDSG 388
L +I+D G
Sbjct: 1543 LDNNQISDKG 1552
Score = 38.5 bits (88), Expect = 5.2, Method: Composition-based stats.
Identities = 30/70 (42%), Positives = 37/70 (52%), Gaps = 8/70 (11%)
Query: 328 SINLSFTGISDGSLR----KLAGLSSLKSLNLDARQITDTG----LAALTSLTGLTHLDL 379
S+NLS ISD LA ++LKSL+LD QI+D G AL S L L L
Sbjct: 1344 SVNLSNQKISDRGAEVLAHSLASNTTLKSLDLDRNQISDKGAEAIAQALASNAALETLWL 1403
Query: 380 FGARITDSGA 389
G +I+D GA
Sbjct: 1404 NGNQISDKGA 1413
>gi|219821339|gb|ACL37804.1| internalin A [Listeria monocytogenes]
Length = 742
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 116/358 (32%), Positives = 171/358 (47%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL--SFGNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 252
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 253 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 310
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 311 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNY 366
>gi|130774755|gb|ABO32392.1| InlA [Listeria monocytogenes]
gi|130774767|gb|ABO32398.1| InlA [Listeria monocytogenes]
gi|298359732|gb|ADI77445.1| internalin A [Listeria monocytogenes]
gi|298360004|gb|ADI77581.1| internalin A [Listeria monocytogenes]
gi|298360478|gb|ADI77818.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 116/358 (32%), Positives = 171/358 (47%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNY 424
>gi|112959552|gb|ABI27303.1| internalin A [Listeria monocytogenes]
gi|112959556|gb|ABI27305.1| internalin A [Listeria monocytogenes]
Length = 737
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 116/358 (32%), Positives = 171/358 (47%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 35 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 88
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 89 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQL--SFGNQVTD--LKPL 140
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 141 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 193
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 194 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 247
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 248 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 305
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 306 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNY 361
>gi|328698260|ref|XP_001948969.2| PREDICTED: leucine-rich repeats and immunoglobulin-like domains
protein 1-like [Acyrthosiphon pisum]
Length = 537
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 95/328 (28%), Positives = 139/328 (42%), Gaps = 35/328 (10%)
Query: 85 SLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL--INLVKLDLERCT 142
L FN I L HL L L +N I AFA L + L+ LD
Sbjct: 73 ELSFNKIRDIEPKSLTHLTELETL----ILSHNIIREMKNGAFANLSKLRLLYLDANEIE 128
Query: 143 RIHGGLVN----------------------LKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
I G+ N GL KL++L++ N I D + K L+ LT
Sbjct: 129 NIENGVFNNLTTLEKLYLNYNKIHKLDSDIFIGLTKLKTLDLS-NNKIRDIEPKSLTHLT 187
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNL---EGCPVTAACLDSLSALGSLFYLNLNR 237
L+ L +S +K++D I L KL LL L E + ++L++L +L YLN N
Sbjct: 188 ELEILILSNNKISDVKIGVFTNLSKLRLLYLDLNEIENIETGVFNNLTSLENL-YLNFNN 246
Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
D E F + L L L +N+I D L LT L+ L+L + I D + T
Sbjct: 247 IHKLD--SEMFIGLTKLNTLYLSYNKIRDIVPKLLSNLTELKVLSLSNNKISDVKIGAFT 304
Query: 298 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 357
L NL+ L L++ ++ + + LT+LE++ L + I GL+ L L+L
Sbjct: 305 NLSNLRTLSLNENKIENLETGVFNNLTSLENLYLDYNRIHYLDSEMFKGLTKLNELHLHN 364
Query: 358 RQITDTGLAALTSLTGLTHLDLFGARIT 385
I + SLT L +L L +T
Sbjct: 365 NMIRNIPRGIFDSLTSLGNLTLRNVPLT 392
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 68/224 (30%), Positives = 103/224 (45%), Gaps = 6/224 (2%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA---ACLD 222
N I D + K L+ LT L++L +S + + + L KL LL L+ + +
Sbjct: 77 NKIRDIEPKSLTHLTELETLILSHNIIREMKNGAFANLSKLRLLYLDANEIENIENGVFN 136
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282
+L+ L L YLN N+ D F + LK L+L N+I D L LT LE L
Sbjct: 137 NLTTLEKL-YLNYNKIHKLDSDI--FIGLTKLKTLDLSNNKIRDIEPKSLTHLTELEILI 193
Query: 283 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 342
L + I D + T L L+ L L ++ + + LT+LE++ L+F I
Sbjct: 194 LSNNKISDVKIGVFTNLSKLRLLYLDLNEIENIETGVFNNLTSLENLYLNFNNIHKLDSE 253
Query: 343 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
GL+ L +L L +I D L++LT L L L +I+D
Sbjct: 254 MFIGLTKLNTLYLSYNKIRDIVPKLLSNLTELKVLSLSNNKISD 297
>gi|313485048|gb|ADR52999.1| InlA [Listeria monocytogenes]
gi|313485083|gb|ADR53012.1| InlA [Listeria monocytogenes]
Length = 800
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 116/358 (32%), Positives = 171/358 (47%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNY 424
>gi|294358397|gb|ADE73851.1| InlA [Listeria monocytogenes]
Length = 800
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 106/329 (32%), Positives = 166/329 (50%), Gaps = 39/329 (11%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNT--ISDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
L GL L LEL++ Q+ + +S L NL + L F ISD + ++ L+ L+ L
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRL 366
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGA 382
+++D ++SL LT+++ A
Sbjct: 367 FFYNNKVSD-----VSSLANLTNINWLSA 390
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 86/275 (31%), Positives = 129/275 (46%), Gaps = 50/275 (18%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCNCITDSD 172
A+ MK G N+ + DL++ T + + +K + LE LN I + N +D
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQL-TD 112
Query: 173 MKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
+ PL LT L + ++ +++ D + +A L L LTL N + +D L L
Sbjct: 113 ITPLKDLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQ-----ITDIDPLKNL---- 163
Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
NLNR +LS N I+D + L GLTNL+ L S G
Sbjct: 164 -TNLNRLELSS-------------------NTISD--ISALSGLTNLQQL---SFGNQVT 198
Query: 292 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 351
L L L L+ L++S +V S + L+ LTNLES+ + ISD + L L++L
Sbjct: 199 DLKPLANLTTLERLDISSNKV--SDISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 352 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
L+L+ Q+ D G L SLT LT LDL +I++
Sbjct: 255 ELSLNGNQLKDIG--TLASLTNLTDLDLANNQISN 287
>gi|290996013|ref|XP_002680577.1| predicted protein [Naegleria gruberi]
gi|284094198|gb|EFC47833.1| predicted protein [Naegleria gruberi]
Length = 395
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/291 (24%), Positives = 135/291 (46%), Gaps = 2/291 (0%)
Query: 98 GLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
G+E + L LT L R + +G K + L L LD+ + G + + +L
Sbjct: 68 GVEAIGLLKQLTELDVRYC-RMGEEGSKIISKLGQLTNLDISHNSIRSKGFKFICEMKQL 126
Query: 158 ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
L +++ N + S + L L L IS + + D G + L++LT L++ ++
Sbjct: 127 IILKVQY-NKLEKSSSNQIEDLKQLTKLDISGNNIDDEGAKSIGQLKQLTKLDISVNYLS 185
Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 277
+ LS L L YLN++ + ++ + + L LN+G N++ E + + +
Sbjct: 186 NVGVKHLSDLQQLIYLNVSYNDVDEEVAKDIYNMKKLSKLNIGGNDLNIESFSMIGKMDH 245
Query: 278 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 337
L+ L G+G++G ++ L +L L++S+ Q+ +G LS + +L +++ F I
Sbjct: 246 LKKLEFGVVGLGNDGFEFISKLKHLTMLDISENQINDNGAELLSRMEHLTKLDVGFNSIG 305
Query: 338 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 388
D +R ++ L L LN + + G ++ + LT L + + D G
Sbjct: 306 DRGIRSISMLKKLTDLNARNNEFGNEGAKYISEMMQLTILQVDENKFGDEG 356
Score = 74.3 bits (181), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 71/294 (24%), Positives = 135/294 (45%), Gaps = 3/294 (1%)
Query: 99 LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158
+E + LT L+ N + +G++A L L +LD+ C G + L +L
Sbjct: 46 IEPIGKFKQLTILNISDNPIM--KGVEAIGLLKQLTELDVRYCRMGEEGSKIISKLGQLT 103
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
+L+I N I K + + L L++ +K+ S ++ L++LT L++ G +
Sbjct: 104 NLDISH-NSIRSKGFKFICEMKQLIILKVQYNKLEKSSSNQIEDLKQLTKLDISGNNIDD 162
Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 278
S+ L L L+++ LS+ G + S + L LN+ +N++ +E + + L
Sbjct: 163 EGAKSIGQLKQLTKLDISVNYLSNVGVKHLSDLQQLIYLNVSYNDVDEEVAKDIYNMKKL 222
Query: 279 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
LN+ + E + + +LK LE +G+ G +S L +L +++S I+D
Sbjct: 223 SKLNIGGNDLNIESFSMIGKMDHLKKLEFGVVGLGNDGFEFISKLKHLTMLDISENQIND 282
Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
L+ + L L++ I D G+ +++ L LT L+ + GA Y+
Sbjct: 283 NGAELLSRMEHLTKLDVGFNSIGDRGIRSISMLKKLTDLNARNNEFGNEGAKYI 336
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 53/255 (20%), Positives = 106/255 (41%), Gaps = 49/255 (19%)
Query: 186 QISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 245
++ SK T + I + ++LT+LN+ P+ +++ L L L++ C++ ++G
Sbjct: 35 ELKLSKHTFNDIEPIGKFKQLTILNISDNPIMKGV-EAIGLLKQLTELDVRYCRMGEEGS 93
Query: 246 EKFSKIGSLK------------------------VLNLGFNEITDECLVHLKGLTNLESL 281
+ SK+G L +L + +N++ ++ L L L
Sbjct: 94 KIISKLGQLTNLDISHNSIRSKGFKFICEMKQLIILKVQYNKLEKSSSNQIEDLKQLTKL 153
Query: 282 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 341
++ I DEG ++ L L L++S + + G++HLS L L +N+S+ + +
Sbjct: 154 DISGNNIDDEGAKSIGQLKQLTKLDISVNYLSNVGVKHLSDLQQLIYLNVSYNDVDEEVA 213
Query: 342 RKLAGLSSLKSLNLDARQIT------------------------DTGLAALTSLTGLTHL 377
+ + + L LN+ + + G ++ L LT L
Sbjct: 214 KDIYNMKKLSKLNIGGNDLNIESFSMIGKMDHLKKLEFGVVGLGNDGFEFISKLKHLTML 273
Query: 378 DLFGARITDSGAAYL 392
D+ +I D+GA L
Sbjct: 274 DISENQINDNGAELL 288
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 64/264 (24%), Positives = 110/264 (41%), Gaps = 35/264 (13%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
L +D+SG+++ D G + L LD + +S+ G++HL L L L+ N
Sbjct: 148 KQLTKLDISGNNIDDEGAKSIGQLKQLTKLDISVNY-LSNVGVKHLSDLQQLIYLNVSYN 206
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL----ESLNIKWCNCITDSD 172
+ +D E I+ N+K L KL LNI+ + I D
Sbjct: 207 D------------------VDEEVAKDIY----NMKKLSKLNIGGNDLNIESFSMIGKMD 244
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
+LK L+ + + G ++ L+ LT+L++ + + LS + L
Sbjct: 245 --------HLKKLEFGVVGLGNDGFEFISKLKHLTMLDISENQINDNGAELLSRMEHLTK 296
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
L++ + D G S + L LN NE +E ++ + L L +D GDEG
Sbjct: 297 LDVGFNSIGDRGIRSISMLKKLTDLNARNNEFGNEGAKYISEMMQLTILQVDENKFGDEG 356
Query: 293 LVNLTGLCNLKCLELSDTQVGSSG 316
++ +T + NLK L + + G
Sbjct: 357 IIAITKMKNLKKLRIFSEYMDKEG 380
>gi|219821276|gb|ACL37762.1| internalin A [Listeria monocytogenes]
gi|219821336|gb|ACL37802.1| internalin A [Listeria monocytogenes]
Length = 739
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 116/358 (32%), Positives = 171/358 (47%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 252
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 253 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 310
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 311 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNY 366
>gi|112959452|gb|ABI27253.1| internalin A [Listeria monocytogenes]
Length = 737
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 116/358 (32%), Positives = 171/358 (47%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 35 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 88
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 89 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 140
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 141 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 193
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 194 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 247
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 248 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 305
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 306 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNY 361
>gi|95108203|emb|CAD17823.3| lrr-gala family type III effector protein (gala 2) [Ralstonia
solanacearum GMI1000]
Length = 1035
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 106/339 (31%), Positives = 157/339 (46%), Gaps = 7/339 (2%)
Query: 57 SSLLSVDLSG---SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ +DLSG S V+++GL +L L SLD + I + G + L ++LTSL+
Sbjct: 631 PSVRHLDLSGCTGSAVSEAGLAYLARLP-LASLDLSDT-GIGNRGAQALAASASLTSLNL 688
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
N I G +A L LD+ + G L G L SL ++ I D +
Sbjct: 689 S-GNGIGTAGAEALGRNTVLTALDISANPIRNAGAQALAGSRSLTSLELR-DTGIEDGGI 746
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
+ L+ T L+SL IS + ++D A L + LT L GC +T L+ + SL L
Sbjct: 747 EALAANTVLRSLDISGNDLSDQSAAALAANRTLTSLKANGCGLTNDMAQQLARIRSLRTL 806
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+ + D G ++ SL+ LNL N IT + L L L+SL++ G GD G
Sbjct: 807 EVGSNSIGDAGVLTIARNASLRSLNLSRNPITPQGLYPLALSRTLKSLDVSRIGCGDRGA 866
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
+ L+G L L+L +V S G R L+ L S++L I + R LA L SL
Sbjct: 867 LLLSGNRALTSLKLGFNRVSSEGARRLAANRTLVSLDLRGNTIDVAAARALANAEPLASL 926
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
N+ ++ D AL LT LD+ R++ A L
Sbjct: 927 NVSDCRLDDAVACALAESRTLTSLDVSWNRLSHRAARAL 965
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 78/287 (27%), Positives = 126/287 (43%), Gaps = 8/287 (2%)
Query: 43 GVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGG--LE 100
G+ D ++ +A+ + L S+D+SG+D++D L L SL N C +D L
Sbjct: 740 GIEDGGIEALAAN-TVLRSLDISGNDLSDQSAAALAANRTLTSLKANGCGLTNDMAQQLA 798
Query: 101 HLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 160
+R L L S N+I G+ A +L L+L R GL L L+SL
Sbjct: 799 RIRSLRTLEVGS----NSIGDAGVLTIARNASLRSLNLSRNPITPQGLYPLALSRTLKSL 854
Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 220
++ C D LSG L SL++ ++V+ G L + L L+L G + A
Sbjct: 855 DVSRIGC-GDRGALLLSGNRALTSLKLGFNRVSSEGARRLAANRTLVSLDLRGNTIDVAA 913
Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 280
+L+ L LN++ C+L D ++ +L L++ +N ++ L L S
Sbjct: 914 ARALANAEPLASLNVSDCRLDDAVACALAESRTLTSLDVSWNRLSHRAARALANNPVLAS 973
Query: 281 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 327
L + IG EG L +L L+ ++G +G R L T +
Sbjct: 974 LYISHNDIGPEGAQALADSASLTFLDARANRIGEAGARLLEANTRMR 1020
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 65/217 (29%), Positives = 92/217 (42%), Gaps = 47/217 (21%)
Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
D + LSGL + L+ +LKG TL +L+ P T L
Sbjct: 94 DRRALSGLRDHPHLES----------VHLKG--DFTLADLKALPTT------------LR 129
Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
+L+L+ C GS K + +L GL LESLN+ IGD
Sbjct: 130 HLDLSEC------------TGSAKSF---------RAIAYLAGLP-LESLNVAGAEIGDG 167
Query: 292 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 351
G L +LK L + + +SG R L+ LES++L+ I D + LAG SL+
Sbjct: 168 GARLLAANPSLKSLNAASGGISASGARMLAESPTLESLDLTQNAIGDAGAQALAGSRSLR 227
Query: 352 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 388
L + +TD G AL L LDL G +T++G
Sbjct: 228 HLAVRNGLVTDLGTRALALNPALVSLDL-GNLVTETG 263
Score = 39.7 bits (91), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 100/229 (43%), Gaps = 16/229 (6%)
Query: 133 LVKLDLERCT---RIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISC 189
L LDL CT + + L GL LESLN+ I D + L+ +LKSL +
Sbjct: 128 LRHLDLSECTGSAKSFRAIAYLAGL-PLESLNVAGAE-IGDGGARLLAANPSLKSLNAAS 185
Query: 190 SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 249
++ SG L L L+L + A +L+ SL +L + ++D G +
Sbjct: 186 GGISASGARMLAESPTLESLDLTQNAIGDAGAQALAGSRSLRHLAVRNGLVTDLGTRALA 245
Query: 250 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG--IGDEGLVNLTGLCNLKCLEL 307
+L L+LG N +T+ +E D I +G L +LK L +
Sbjct: 246 LNPALVSLDLG-NLVTETG-------NQVEQDGYDKTANNITAQGAWALAQNRSLKSLSV 297
Query: 308 SDTQV-GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355
+ G G+R L+ L S+N++FT ++ S + LA L SL++
Sbjct: 298 QGNDLCGDDGVRALARNRTLTSLNVAFTNMTSASAKALADNPVLTSLSV 346
>gi|112961679|gb|ABI28472.1| internalin A [Listeria monocytogenes]
gi|112961682|gb|ABI28474.1| internalin A [Listeria monocytogenes]
gi|112961685|gb|ABI28476.1| internalin A [Listeria monocytogenes]
Length = 751
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 116/358 (32%), Positives = 171/358 (47%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 49 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 102
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 103 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 154
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 155 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 207
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 208 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 261
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 262 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 319
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 320 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNY 375
>gi|112961646|gb|ABI28450.1| internalin A [Listeria monocytogenes]
gi|112961721|gb|ABI28500.1| internalin A [Listeria monocytogenes]
gi|112961757|gb|ABI28524.1| internalin A [Listeria monocytogenes]
Length = 751
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 116/358 (32%), Positives = 171/358 (47%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 49 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 102
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 103 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 154
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 155 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 207
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 208 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 261
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 262 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 319
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 320 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNY 375
>gi|112959438|gb|ABI27246.1| internalin A [Listeria monocytogenes]
gi|112959450|gb|ABI27252.1| internalin A [Listeria monocytogenes]
gi|112959456|gb|ABI27255.1| internalin A [Listeria monocytogenes]
gi|112959496|gb|ABI27275.1| internalin A [Listeria monocytogenes]
gi|112959498|gb|ABI27276.1| internalin A [Listeria monocytogenes]
gi|112959526|gb|ABI27290.1| internalin A [Listeria monocytogenes]
gi|112959528|gb|ABI27291.1| internalin A [Listeria monocytogenes]
Length = 737
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 116/358 (32%), Positives = 171/358 (47%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 35 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 88
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 89 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 140
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 141 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 193
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 194 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 247
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 248 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 305
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 306 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNY 361
>gi|112961616|gb|ABI28430.1| internalin A [Listeria monocytogenes]
gi|112961649|gb|ABI28452.1| internalin A [Listeria monocytogenes]
gi|112961652|gb|ABI28454.1| internalin A [Listeria monocytogenes]
gi|112961664|gb|ABI28462.1| internalin A [Listeria monocytogenes]
gi|112961691|gb|ABI28480.1| internalin A [Listeria monocytogenes]
gi|112961718|gb|ABI28498.1| internalin A [Listeria monocytogenes]
gi|112961727|gb|ABI28504.1| internalin A [Listeria monocytogenes]
gi|112961748|gb|ABI28518.1| internalin A [Listeria monocytogenes]
gi|112961751|gb|ABI28520.1| internalin A [Listeria monocytogenes]
gi|112961769|gb|ABI28532.1| internalin A [Listeria monocytogenes]
gi|112961775|gb|ABI28536.1| internalin A [Listeria monocytogenes]
Length = 751
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 116/358 (32%), Positives = 171/358 (47%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 49 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 102
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 103 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 154
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 155 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 207
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 208 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 261
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 262 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 319
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 320 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNY 375
>gi|85679234|gb|ABC72033.1| InlA [Listeria monocytogenes]
Length = 794
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 106/329 (32%), Positives = 166/329 (50%), Gaps = 39/329 (11%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 97 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 150
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 151 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 202
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 203 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 255
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 256 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 309
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
L GL L LEL++ Q+ + +S L NL + L F ISD + ++ L+ L+ L
Sbjct: 310 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD--ISPVSNLTKLQRL 365
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGA 382
+++D ++SL LT+++ A
Sbjct: 366 FFYNNKVSD-----VSSLANLTNINWLSA 389
>gi|430743420|ref|YP_007202549.1| hypothetical protein Sinac_2547 [Singulisphaera acidiphila DSM
18658]
gi|430015140|gb|AGA26854.1| hypothetical protein Sinac_2547 [Singulisphaera acidiphila DSM
18658]
Length = 356
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 72/225 (32%), Positives = 117/225 (52%), Gaps = 5/225 (2%)
Query: 169 TDSDMKPLSGLTNLKSLQISC-SKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSA 226
T++ M + L+ L+ L + SK+T++G+ +L+ L +L +++L P VT L L+
Sbjct: 121 TNATMSHVGRLSQLEELDATGGSKLTNAGLVHLQSLTRLRMVDLSLLPGVTGKGLIHLAE 180
Query: 227 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDS 285
L SL LNL+ D + G N ITDE L +LKGLT L L L +
Sbjct: 181 LTSLERLNLSSPVADADLVNLSRLTNLRLLRLNGGGNGITDEGLANLKGLTELRELILRN 240
Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 345
+ GL L G+ + L+L ++ + + L L +T L+S+ + + + D L+ +
Sbjct: 241 SQVTGTGLTALQGMIAMADLKLINSHLET--LEPLQRMTGLKSLWIHRSPLDDRGLKHVE 298
Query: 346 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 390
L SL+ L+L+ +ITD GL +L L GL +D G +T G+A
Sbjct: 299 NLKSLQYLSLEDTRITDDGLKSLLDLRGLREVDARGTGVTIMGSA 343
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/223 (28%), Positives = 104/223 (46%), Gaps = 27/223 (12%)
Query: 66 GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMK 125
GS +T++GL+HL+ + L+ +D + ++ GL HL L++L L+
Sbjct: 142 GSKLTNAGLVHLQSLTRLRMVDLSLLPGVTGKGLIHLAELTSLERLNL--------SSPV 193
Query: 126 AFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
A A L+NL +L R R++GG N ITD + L GLT L+ L
Sbjct: 194 ADADLVNLSRLTNLRLLRLNGG-----------------GNGITDEGLANLKGLTELREL 236
Query: 186 QISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 245
+ S+VT +G+ L+G+ + L L + L+ L + L L ++R L D G
Sbjct: 237 ILRNSQVTGTGLTALQGMIAMADLKLINSHL--ETLEPLQRMTGLKSLWIHRSPLDDRGL 294
Query: 246 EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 288
+ + SL+ L+L ITD+ L L L L ++ G+
Sbjct: 295 KHVENLKSLQYLSLEDTRITDDGLKSLLDLRGLREVDARGTGV 337
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 54/144 (37%), Positives = 84/144 (58%), Gaps = 10/144 (6%)
Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG---IGDEGLVNLTGLCNLKCLEL 307
GS+K +LG ++ T+ + H+ L+ LE LD+ G + + GLV+L L L+ ++L
Sbjct: 108 FGSVKQASLG-SQATNATMSHVGRLSQLE--ELDATGGSKLTNAGLVHLQSLTRLRMVDL 164
Query: 308 SD-TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA--RQITDTG 364
S V GL HL+ LT+LE +NLS + ++D L L+ L++L+ L L+ ITD G
Sbjct: 165 SLLPGVTGKGLIHLAELTSLERLNLS-SPVADADLVNLSRLTNLRLLRLNGGGNGITDEG 223
Query: 365 LAALTSLTGLTHLDLFGARITDSG 388
LA L LT L L L +++T +G
Sbjct: 224 LANLKGLTELRELILRNSQVTGTG 247
>gi|71912408|gb|AAZ53236.1| InlA [Listeria monocytogenes]
Length = 800
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 116/358 (32%), Positives = 172/358 (48%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNY 424
>gi|32477277|ref|NP_870271.1| G protein-coupled receptor LGR4 [Rhodopirellula baltica SH 1]
gi|32447828|emb|CAD77346.1| probable G protein-coupled receptor LGR4 [Rhodopirellula baltica SH
1]
Length = 341
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 104/226 (46%), Gaps = 2/226 (0%)
Query: 170 DSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 229
D +K LS + + L + + +D + L L L L + G A S+S L +
Sbjct: 83 DGAVKLLSNTSTVSELFMPAAAWSDGTVLRLAALPNLKRLRVYGKAFDDAKAKSISGLPA 142
Query: 230 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 289
L + ++DDG +++ L+ ++L + +TD+ L + L L LNL I
Sbjct: 143 LVAVTFQDTSVTDDGASVLAELNELQDVSLMKSPVTDKTLTSISTLPKLTKLNLRGTKIT 202
Query: 290 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 349
E ++ L L+ LEL++T G G+ ++ + LE INL T I + SL+ G +S
Sbjct: 203 GEAFEPISKLP-LESLELAETDFGPEGMPAIANIEGLEKINLWLTKIDNESLKAFEGKTS 261
Query: 350 LKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRS 394
L LN+D IT+ + + SL L L L ++ L+
Sbjct: 262 LTVLNVDNCPAITEEAIPVIVSLPHLKLLHLGKTSVSPDALPQLKP 307
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 103/226 (45%), Gaps = 25/226 (11%)
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK 205
G ++ L L L+ L + + D+ K +SGL L ++ + VTD G + L L +
Sbjct: 108 GTVLRLAALPNLKRLRV-YGKAFDDAKAKSISGLPALVAVTFQDTSVTDDGASVLAELNE 166
Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK--------------- 250
L ++L PVT L S+S L L LNL +++ + E SK
Sbjct: 167 LQDVSLMKSPVTDKTLTSISTLPKLTKLNLRGTKITGEAFEPISKLPLESLELAETDFGP 226
Query: 251 --------IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCN 301
I L+ +NL +I +E L +G T+L LN+D+C I +E + + L +
Sbjct: 227 EGMPAIANIEGLEKINLWLTKIDNESLKAFEGKTSLTVLNVDNCPAITEEAIPVIVSLPH 286
Query: 302 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 347
LK L L T V L L L LE++ ++ G+ + ++L +
Sbjct: 287 LKLLHLGKTSVSPDALPQLKPLQELETLFVTNLGLEEEPAKELEAM 332
Score = 42.7 bits (99), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 71/176 (40%), Gaps = 25/176 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+L++V + VTD G L + + LQ + ++D L + L LT L+ R
Sbjct: 141 PALVAVTFQDTSVTDDGASVLAELNELQDVSL-MKSPVTDKTLTSISTLPKLTKLNLR-G 198
Query: 117 NAIT-----------------------AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
IT +GM A A + L K++L + L +G
Sbjct: 199 TKITGEAFEPISKLPLESLELAETDFGPEGMPAIANIEGLEKINLWLTKIDNESLKAFEG 258
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL 209
L LN+ C IT+ + + L +LK L + + V+ + LK LQ+L L
Sbjct: 259 KTSLTVLNVDNCPAITEEAIPVIVSLPHLKLLHLGKTSVSPDALPQLKPLQELETL 314
>gi|112959508|gb|ABI27281.1| internalin A [Listeria monocytogenes]
Length = 737
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 116/358 (32%), Positives = 171/358 (47%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 35 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 88
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 89 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 140
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 141 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 193
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 194 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 247
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 248 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 305
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 306 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNY 361
>gi|112959506|gb|ABI27280.1| internalin A [Listeria monocytogenes]
Length = 737
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 116/358 (32%), Positives = 171/358 (47%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 35 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 88
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 89 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQL--SFGNQVTD--LKPL 140
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 141 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 193
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 194 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 247
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 248 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 305
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 306 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNY 361
>gi|298359932|gb|ADI77545.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 116/358 (32%), Positives = 172/358 (48%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNY 424
>gi|284800720|ref|YP_003412585.1| Internalin A [Listeria monocytogenes 08-5578]
gi|284993906|ref|YP_003415674.1| Internalin A [Listeria monocytogenes 08-5923]
gi|130774827|gb|ABO32426.1| InlA [Listeria monocytogenes]
gi|167862038|gb|ACA05718.1| InlA [Listeria monocytogenes]
gi|194326145|emb|CAQ77231.1| internalin A [Listeria monocytogenes]
gi|194326165|emb|CAQ77241.1| internalin A [Listeria monocytogenes]
gi|284056282|gb|ADB67223.1| Internalin A [Listeria monocytogenes 08-5578]
gi|284059373|gb|ADB70312.1| Internalin A [Listeria monocytogenes 08-5923]
gi|298359730|gb|ADI77444.1| internalin A [Listeria monocytogenes]
gi|298359786|gb|ADI77472.1| internalin A [Listeria monocytogenes]
gi|298359904|gb|ADI77531.1| internalin A [Listeria monocytogenes]
gi|298359978|gb|ADI77568.1| internalin A [Listeria monocytogenes]
gi|298360068|gb|ADI77613.1| internalin A [Listeria monocytogenes]
gi|298360228|gb|ADI77693.1| internalin A [Listeria monocytogenes]
gi|298360452|gb|ADI77805.1| internalin A [Listeria monocytogenes]
gi|298360556|gb|ADI77857.1| internalin A [Listeria monocytogenes]
gi|298360576|gb|ADI77867.1| internalin A [Listeria monocytogenes]
gi|298360600|gb|ADI77879.1| internalin A [Listeria monocytogenes]
gi|298360678|gb|ADI77918.1| internalin A [Listeria monocytogenes]
gi|443428872|gb|AGC92235.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 116/358 (32%), Positives = 172/358 (48%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNY 424
>gi|112959446|gb|ABI27250.1| internalin A [Listeria monocytogenes]
gi|112959466|gb|ABI27260.1| internalin A [Listeria monocytogenes]
gi|112959470|gb|ABI27262.1| internalin A [Listeria monocytogenes]
gi|112959474|gb|ABI27264.1| internalin A [Listeria monocytogenes]
gi|112959476|gb|ABI27265.1| internalin A [Listeria monocytogenes]
gi|112959478|gb|ABI27266.1| internalin A [Listeria monocytogenes]
gi|112959484|gb|ABI27269.1| internalin A [Listeria monocytogenes]
gi|112959486|gb|ABI27270.1| internalin A [Listeria monocytogenes]
gi|112959492|gb|ABI27273.1| internalin A [Listeria monocytogenes]
gi|112959494|gb|ABI27274.1| internalin A [Listeria monocytogenes]
gi|112959504|gb|ABI27279.1| internalin A [Listeria monocytogenes]
gi|112959516|gb|ABI27285.1| internalin A [Listeria monocytogenes]
gi|112959532|gb|ABI27293.1| internalin A [Listeria monocytogenes]
gi|112959534|gb|ABI27294.1| internalin A [Listeria monocytogenes]
gi|112959540|gb|ABI27297.1| internalin A [Listeria monocytogenes]
gi|112959544|gb|ABI27299.1| internalin A [Listeria monocytogenes]
gi|112959550|gb|ABI27302.1| internalin A [Listeria monocytogenes]
gi|112959554|gb|ABI27304.1| internalin A [Listeria monocytogenes]
gi|112959558|gb|ABI27306.1| internalin A [Listeria monocytogenes]
gi|112959560|gb|ABI27307.1| internalin A [Listeria monocytogenes]
Length = 737
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 116/358 (32%), Positives = 171/358 (47%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 35 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 88
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 89 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 140
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 141 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 193
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 194 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 247
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 248 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 305
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 306 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNY 361
>gi|254828935|ref|ZP_05233622.1| internalin A [Listeria monocytogenes FSL N3-165]
gi|130774797|gb|ABO32413.1| InlA [Listeria monocytogenes]
gi|130774811|gb|ABO32418.1| InlA [Listeria monocytogenes]
gi|194239388|emb|CAQ76834.1| internalin A [Listeria monocytogenes]
gi|258601346|gb|EEW14671.1| internalin A [Listeria monocytogenes FSL N3-165]
gi|298360424|gb|ADI77791.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 106/329 (32%), Positives = 166/329 (50%), Gaps = 39/329 (11%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
L GL L LEL++ Q+ + +S L NL + L F ISD + ++ L+ L+ L
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRL 366
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGA 382
+++D ++SL LT+++ A
Sbjct: 367 FFYNNKVSD-----VSSLANLTNINWLSA 390
>gi|22347562|gb|AAM95926.1| internalin A precursor [Listeria monocytogenes]
Length = 744
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 116/358 (32%), Positives = 171/358 (47%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 42 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 95
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 96 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 147
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 148 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 200
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 201 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 254
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 255 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 312
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 313 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNY 368
>gi|149674|gb|AAA25289.1| internalin [Listeria monocytogenes]
gi|22347564|gb|AAM95927.1| internalin A precursor [Listeria monocytogenes]
Length = 744
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 116/358 (32%), Positives = 172/358 (48%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 42 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 95
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 96 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 147
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 148 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 200
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 201 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 254
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 255 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 312
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 313 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNY 368
>gi|130774791|gb|ABO32410.1| InlA [Listeria monocytogenes]
gi|298360240|gb|ADI77699.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 106/329 (32%), Positives = 166/329 (50%), Gaps = 39/329 (11%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
L GL L LEL++ Q+ + +S L NL + L F ISD + ++ L+ L+ L
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRL 366
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGA 382
+++D ++SL LT+++ A
Sbjct: 367 FFYNNKVSD-----VSSLANLTNINWLSA 390
>gi|421610748|ref|ZP_16051914.1| leucine-rich repeat domain protein [Rhodopirellula baltica SH28]
gi|408498532|gb|EKK03025.1| leucine-rich repeat domain protein [Rhodopirellula baltica SH28]
Length = 341
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 104/226 (46%), Gaps = 2/226 (0%)
Query: 170 DSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 229
D +K LS + + L + + +D + L L L L + G A S+S L +
Sbjct: 83 DGAVKLLSNTSTVSELFMPAAAWSDGTVLRLAALPNLKRLRVYGKAFDDAKAKSISGLPA 142
Query: 230 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 289
L + ++DDG +++ L+ ++L + +TD+ L + L L LNL I
Sbjct: 143 LVAVTFQDTSVTDDGASVLAELNELQDVSLMNSPVTDKTLASISTLPKLTKLNLRGTKIT 202
Query: 290 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 349
E ++ L L+ LEL++T G G+ ++ + LE INL T I + SL+ G +S
Sbjct: 203 GEAFEPISKLP-LESLELAETDFGPEGMPAIANIEGLEKINLWLTKIDNESLKAFEGKTS 261
Query: 350 LKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRS 394
L LN+D IT+ + + SL L L L ++ L+
Sbjct: 262 LTVLNVDNCPAITEEAIPVIVSLPHLKLLHLGKTSVSPDALPQLKP 307
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 103/226 (45%), Gaps = 25/226 (11%)
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK 205
G ++ L L L+ L + + D+ K +SGL L ++ + VTD G + L L +
Sbjct: 108 GTVLRLAALPNLKRLRV-YGKAFDDAKAKSISGLPALVAVTFQDTSVTDDGASVLAELNE 166
Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK--------------- 250
L ++L PVT L S+S L L LNL +++ + E SK
Sbjct: 167 LQDVSLMNSPVTDKTLASISTLPKLTKLNLRGTKITGEAFEPISKLPLESLELAETDFGP 226
Query: 251 --------IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCN 301
I L+ +NL +I +E L +G T+L LN+D+C I +E + + L +
Sbjct: 227 EGMPAIANIEGLEKINLWLTKIDNESLKAFEGKTSLTVLNVDNCPAITEEAIPVIVSLPH 286
Query: 302 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 347
LK L L T V L L L LE++ ++ G+ + ++L +
Sbjct: 287 LKLLHLGKTSVSPDALPQLKPLQELETLFVTNLGLEEEPAKELEAM 332
Score = 42.7 bits (99), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 71/176 (40%), Gaps = 25/176 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+L++V + VTD G L + + LQ + ++D L + L LT L+ R
Sbjct: 141 PALVAVTFQDTSVTDDGASVLAELNELQDVSL-MNSPVTDKTLASISTLPKLTKLNLR-G 198
Query: 117 NAIT-----------------------AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
IT +GM A A + L K++L + L +G
Sbjct: 199 TKITGEAFEPISKLPLESLELAETDFGPEGMPAIANIEGLEKINLWLTKIDNESLKAFEG 258
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL 209
L LN+ C IT+ + + L +LK L + + V+ + LK LQ+L L
Sbjct: 259 KTSLTVLNVDNCPAITEEAIPVIVSLPHLKLLHLGKTSVSPDALPQLKPLQELETL 314
>gi|386042770|ref|YP_005961575.1| internalin A [Listeria monocytogenes 10403S]
gi|404409675|ref|YP_006695263.1| internalin A [Listeria monocytogenes SLCC5850]
gi|403399436|sp|G2K3G6.1|INLA_LISM4 RecName: Full=Internalin-A; Flags: Precursor
gi|150371722|dbj|BAF65676.1| internalin A [Listeria monocytogenes]
gi|150371786|dbj|BAF65682.1| internalin A [Listeria monocytogenes]
gi|150371800|dbj|BAF65689.1| internalin A [Listeria monocytogenes]
gi|150371810|dbj|BAF65694.1| internalin A [Listeria monocytogenes]
gi|150371812|dbj|BAF65695.1| internalin A [Listeria monocytogenes]
gi|150371816|dbj|BAF65697.1| internalin A [Listeria monocytogenes]
gi|150371826|dbj|BAF65702.1| internalin A [Listeria monocytogenes]
gi|150371840|dbj|BAF65709.1| internalin A [Listeria monocytogenes]
gi|150371842|dbj|BAF65710.1| internalin A [Listeria monocytogenes]
gi|150371862|dbj|BAF65720.1| internalin A [Listeria monocytogenes]
gi|150371866|dbj|BAF65722.1| internalin A [Listeria monocytogenes]
gi|167861902|gb|ACA05650.1| InlA [Listeria monocytogenes]
gi|167861984|gb|ACA05691.1| InlA [Listeria monocytogenes]
gi|167862000|gb|ACA05699.1| InlA [Listeria monocytogenes]
gi|167862006|gb|ACA05702.1| InlA [Listeria monocytogenes]
gi|194239412|emb|CAQ76846.1| internalin A [Listeria monocytogenes]
gi|223006784|gb|ACM69349.1| internalin A [Listeria monocytogenes]
gi|298359776|gb|ADI77467.1| internalin A [Listeria monocytogenes]
gi|298359804|gb|ADI77481.1| internalin A [Listeria monocytogenes]
gi|298359874|gb|ADI77516.1| internalin A [Listeria monocytogenes]
gi|298360072|gb|ADI77615.1| internalin A [Listeria monocytogenes]
gi|298360106|gb|ADI77632.1| internalin A [Listeria monocytogenes]
gi|298360118|gb|ADI77638.1| internalin A [Listeria monocytogenes]
gi|298360218|gb|ADI77688.1| internalin A [Listeria monocytogenes]
gi|298360262|gb|ADI77710.1| internalin A [Listeria monocytogenes]
gi|298360280|gb|ADI77719.1| internalin A [Listeria monocytogenes]
gi|298360386|gb|ADI77772.1| internalin A [Listeria monocytogenes]
gi|298360468|gb|ADI77813.1| internalin A [Listeria monocytogenes]
gi|298360570|gb|ADI77864.1| internalin A [Listeria monocytogenes]
gi|298360722|gb|ADI77940.1| internalin A [Listeria monocytogenes]
gi|302034307|gb|ADK92307.1| internalin A [Listeria monocytogenes]
gi|302034309|gb|ADK92308.1| internalin A [Listeria monocytogenes]
gi|302034311|gb|ADK92309.1| internalin A [Listeria monocytogenes]
gi|302034313|gb|ADK92310.1| internalin A [Listeria monocytogenes]
gi|302034319|gb|ADK92313.1| internalin A [Listeria monocytogenes]
gi|302034321|gb|ADK92314.1| internalin A [Listeria monocytogenes]
gi|302034323|gb|ADK92315.1| internalin A [Listeria monocytogenes]
gi|302034325|gb|ADK92316.1| internalin A [Listeria monocytogenes]
gi|345536004|gb|AEO05444.1| internalin A [Listeria monocytogenes 10403S]
gi|404229501|emb|CBY50905.1| internalin A (LPXTG motif) [Listeria monocytogenes SLCC5850]
gi|443428772|gb|AGC92185.1| internalin A [Listeria monocytogenes]
gi|443428780|gb|AGC92189.1| internalin A [Listeria monocytogenes]
gi|443428864|gb|AGC92231.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 116/358 (32%), Positives = 172/358 (48%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNY 424
>gi|256395747|ref|YP_003117311.1| hypothetical protein Caci_6624 [Catenulispora acidiphila DSM 44928]
gi|256361973|gb|ACU75470.1| hypothetical protein Caci_6624 [Catenulispora acidiphila DSM 44928]
Length = 175
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 74/124 (59%), Gaps = 2/124 (1%)
Query: 247 KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 306
+F +G+ +V + +T E LV L G+ L +LNL++ IGD+ L + L L+ L+
Sbjct: 7 RFFDVGAERVY--ADDRVTREDLVALAGMPRLRALNLNTAAIGDDDLEAVGRLVGLQDLD 64
Query: 307 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 366
+S T + +G+RHLSGLT++ + + T ++D LR LA + +L+++NL I+D GL
Sbjct: 65 VSTTDITDAGVRHLSGLTDMRHLRIKETRVTDAGLRLLAPMGALETVNLRRLDISDEGLR 124
Query: 367 ALTS 370
L
Sbjct: 125 GLAE 128
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 82/151 (54%), Gaps = 7/151 (4%)
Query: 139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIA 198
+R TR LV L G+ +L +LN+ I D D++ + L L+ L +S + +TD+G+
Sbjct: 20 DRVTR--EDLVALAGMPRLRALNLNTA-AIGDDDLEAVGRLVGLQDLDVSTTDITDAGVR 76
Query: 199 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 258
+L GL + L ++ VT A L L+ +G+L +NL R +SD+G ++ + L+
Sbjct: 77 HLSGLTDMRHLRIKETRVTDAGLRLLAPMGALETVNLRRLDISDEGLRGLAE--RHRCLD 134
Query: 259 -LGFNEITDECLVHLKGLTNLESLNLDSCGI 288
+ ++ DEC + GL ++ L L +C I
Sbjct: 135 TIVISDEVDECRFTVAGLAEVQRL-LPACEI 164
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 53/98 (54%)
Query: 291 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 350
E LV L G+ L+ L L+ +G L + L L+ +++S T I+D +R L+GL+ +
Sbjct: 25 EDLVALAGMPRLRALNLNTAAIGDDDLEAVGRLVGLQDLDVSTTDITDAGVRHLSGLTDM 84
Query: 351 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 388
+ L + ++TD GL L + L ++L I+D G
Sbjct: 85 RHLRIKETRVTDAGLRLLAPMGALETVNLRRLDISDEG 122
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 62/130 (47%), Gaps = 24/130 (18%)
Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 275
VT L +L+ + L LNLN + DD E ++ L+ L++ +ITD + HL GL
Sbjct: 22 VTREDLVALAGMPRLRALNLNTAAIGDDDLEAVGRLVGLQDLDVSTTDITDAGVRHLSGL 81
Query: 276 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 335
T +++ L + +T+V +GLR L+ + LE++NL
Sbjct: 82 T------------------------DMRHLRIKETRVTDAGLRLLAPMGALETVNLRRLD 117
Query: 336 ISDGSLRKLA 345
ISD LR LA
Sbjct: 118 ISDEGLRGLA 127
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%)
Query: 308 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 367
+D +V L L+G+ L ++NL+ I D L + L L+ L++ ITD G+
Sbjct: 18 ADDRVTREDLVALAGMPRLRALNLNTAAIGDDDLEAVGRLVGLQDLDVSTTDITDAGVRH 77
Query: 368 LTSLTGLTHLDLFGARITDSG 388
L+ LT + HL + R+TD+G
Sbjct: 78 LSGLTDMRHLRIKETRVTDAG 98
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 51/106 (48%)
Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 250
+VT + L G+ +L LNL + L+++ L L L+++ ++D G S
Sbjct: 21 RVTREDLVALAGMPRLRALNLNTAAIGDDDLEAVGRLVGLQDLDVSTTDITDAGVRHLSG 80
Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
+ ++ L + +TD L L + LE++NL I DEGL L
Sbjct: 81 LTDMRHLRIKETRVTDAGLRLLAPMGALETVNLRRLDISDEGLRGL 126
>gi|130774815|gb|ABO32420.1| InlA [Listeria monocytogenes]
gi|194239404|emb|CAQ76842.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 116/358 (32%), Positives = 172/358 (48%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNY 424
>gi|440712554|ref|ZP_20893170.1| hypothetical protein RBSWK_00227 [Rhodopirellula baltica SWK14]
gi|436442709|gb|ELP35820.1| hypothetical protein RBSWK_00227 [Rhodopirellula baltica SWK14]
Length = 341
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 104/226 (46%), Gaps = 2/226 (0%)
Query: 170 DSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 229
D +K LS + + L + + +D + L L L L + G A S+S L +
Sbjct: 83 DGAVKLLSNTSTVSELFMPAAAWSDGTVLRLAALPNLKRLRVYGKAFDDAKAKSISGLPA 142
Query: 230 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 289
L + ++DDG +++ L+ ++L + +TD+ L + L L LNL I
Sbjct: 143 LVAVTFQDTSVTDDGASVLAELNELQDVSLMNSPVTDKTLASISTLPKLTKLNLRGTKIT 202
Query: 290 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 349
E ++ L L+ LEL++T G G+ ++ + LE INL T I + SL+ G +S
Sbjct: 203 GEAFEPISKLP-LESLELAETDFGPEGMPAIANIEGLEKINLWLTKIDNESLKAFEGKTS 261
Query: 350 LKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRS 394
L LN+D IT+ + + SL L L L ++ L+
Sbjct: 262 LTVLNVDNCPAITEEAIPVIVSLPHLKLLHLGKTSVSPDALPQLKP 307
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 103/226 (45%), Gaps = 25/226 (11%)
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK 205
G ++ L L L+ L + + D+ K +SGL L ++ + VTD G + L L +
Sbjct: 108 GTVLRLAALPNLKRLRV-YGKAFDDAKAKSISGLPALVAVTFQDTSVTDDGASVLAELNE 166
Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK--------------- 250
L ++L PVT L S+S L L LNL +++ + E SK
Sbjct: 167 LQDVSLMNSPVTDKTLASISTLPKLTKLNLRGTKITGEAFEPISKLPLESLELAETDFGP 226
Query: 251 --------IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCN 301
I L+ +NL +I +E L +G T+L LN+D+C I +E + + L +
Sbjct: 227 EGMPAIANIEGLEKINLWLTKIDNESLKAFEGKTSLTVLNVDNCPAITEEAIPVIVSLPH 286
Query: 302 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 347
LK L L T V L L L LE++ ++ G+ + ++L +
Sbjct: 287 LKLLHLGKTSVSPDALPQLKPLQELETLFVTNLGLEEEPAKELEAM 332
Score = 42.7 bits (99), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 71/176 (40%), Gaps = 25/176 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+L++V + VTD G L + + LQ + ++D L + L LT L+ R
Sbjct: 141 PALVAVTFQDTSVTDDGASVLAELNELQDVSL-MNSPVTDKTLASISTLPKLTKLNLR-G 198
Query: 117 NAIT-----------------------AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
IT +GM A A + L K++L + L +G
Sbjct: 199 TKITGEAFEPISKLPLESLELAETDFGPEGMPAIANIEGLEKINLWLTKIDNESLKAFEG 258
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL 209
L LN+ C IT+ + + L +LK L + + V+ + LK LQ+L L
Sbjct: 259 KTSLTVLNVDNCPAITEEAIPVIVSLPHLKLLHLGKTSVSPDALPQLKPLQELETL 314
>gi|223698610|gb|ACN18980.1| internalin A [Listeria monocytogenes]
gi|223698616|gb|ACN18984.1| internalin A [Listeria monocytogenes]
gi|223698631|gb|ACN18994.1| internalin A [Listeria monocytogenes]
gi|223698637|gb|ACN18998.1| internalin A [Listeria monocytogenes]
gi|223698640|gb|ACN19000.1| internalin A [Listeria monocytogenes]
gi|223698649|gb|ACN19006.1| internalin A [Listeria monocytogenes]
gi|223698652|gb|ACN19008.1| internalin A [Listeria monocytogenes]
gi|223698661|gb|ACN19014.1| internalin A [Listeria monocytogenes]
gi|223698667|gb|ACN19018.1| internalin A [Listeria monocytogenes]
gi|223698676|gb|ACN19024.1| internalin A [Listeria monocytogenes]
gi|223698679|gb|ACN19026.1| internalin A [Listeria monocytogenes]
gi|223698685|gb|ACN19030.1| internalin A [Listeria monocytogenes]
gi|223698688|gb|ACN19032.1| internalin A [Listeria monocytogenes]
gi|223698709|gb|ACN19046.1| internalin A [Listeria monocytogenes]
gi|223698721|gb|ACN19054.1| internalin A [Listeria monocytogenes]
gi|223698724|gb|ACN19056.1| internalin A [Listeria monocytogenes]
gi|223698727|gb|ACN19058.1| internalin A [Listeria monocytogenes]
gi|223698730|gb|ACN19060.1| internalin A [Listeria monocytogenes]
gi|223698733|gb|ACN19062.1| internalin A [Listeria monocytogenes]
gi|223698742|gb|ACN19068.1| internalin A [Listeria monocytogenes]
gi|223698763|gb|ACN19082.1| internalin A [Listeria monocytogenes]
gi|223698790|gb|ACN19100.1| internalin A [Listeria monocytogenes]
gi|223698808|gb|ACN19112.1| internalin A [Listeria monocytogenes]
gi|223698811|gb|ACN19114.1| internalin A [Listeria monocytogenes]
gi|223698823|gb|ACN19122.1| internalin A [Listeria monocytogenes]
gi|223698853|gb|ACN19142.1| internalin A [Listeria monocytogenes]
gi|223698874|gb|ACN19156.1| internalin A [Listeria monocytogenes]
gi|223698889|gb|ACN19166.1| internalin A [Listeria monocytogenes]
gi|223698949|gb|ACN19206.1| internalin A [Listeria monocytogenes]
Length = 715
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 106/329 (32%), Positives = 166/329 (50%), Gaps = 39/329 (11%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 13 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 66
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 67 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 118
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 119 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 171
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 172 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 225
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
L GL L LEL++ Q+ + +S L NL + L F ISD + ++ L+ L+ L
Sbjct: 226 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRL 281
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGA 382
+++D ++SL LT+++ A
Sbjct: 282 FFYNNKVSD-----VSSLANLTNINWLSA 305
>gi|298360200|gb|ADI77679.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 116/358 (32%), Positives = 172/358 (48%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNY 424
>gi|112959464|gb|ABI27259.1| internalin A [Listeria monocytogenes]
Length = 698
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 115/353 (32%), Positives = 168/353 (47%), Gaps = 54/353 (15%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
++ S + +TD + LKD + L + N QI+D + L L+NLT L+ NN IT
Sbjct: 1 INFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQIT- 53
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
+ L NL +L+L T + L GL L+ L+ N +TD +KPL+ LT
Sbjct: 54 -DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPLANLTT 106
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNLNRC 238
L+ L IS +KV+D + L KLT NLE T + ++ LG +L L+LN
Sbjct: 107 LERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSLNGN 159
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
QL D G + + +L L+L N+I++ L L GLT L L L + I + + L G
Sbjct: 160 QLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAG 213
Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK----------- 343
L L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 214 LTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKV 271
Query: 344 -----LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 272 SDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNY 322
>gi|219821255|gb|ACL37748.1| internalin A [Listeria monocytogenes]
Length = 742
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 106/329 (32%), Positives = 166/329 (50%), Gaps = 39/329 (11%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQL--SFGNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 252
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
L GL L LEL++ Q+ + +S L NL + L F ISD + ++ L+ L+ L
Sbjct: 253 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRL 308
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGA 382
+++D ++SL LT+++ A
Sbjct: 309 FFYNNKVSD-----VSSLANLTNINWLSA 332
>gi|294358393|gb|ADE73849.1| InlA [Listeria monocytogenes]
Length = 800
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 116/358 (32%), Positives = 171/358 (47%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL + G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKEIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNY 424
>gi|419761284|ref|ZP_14287540.1| internalin-A [Thermosipho africanus H17ap60334]
gi|407513590|gb|EKF48487.1| internalin-A [Thermosipho africanus H17ap60334]
Length = 598
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 86/241 (35%), Positives = 130/241 (53%), Gaps = 25/241 (10%)
Query: 149 VNLKGLMKLESLNIKWCNCITDSDMKPLSGL---TNLKSLQISCSKVTDSGIAYLKGLQK 205
+ ++ + +LE+L++ + S ++ LSGL NL+SL +S S+V D ++ L L K
Sbjct: 41 ITVQDMWELENLSLSF------SSVRDLSGLEYAVNLESLDLSNSEVPD--LSPLAKLPK 92
Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265
L L+L GC + L L +L L L+ ++SD +K L++L+L N I+
Sbjct: 93 LVKLDLSGCGIEDLS--LLPNLPNLISLRLSGNEISD--ISPLTKFSKLRMLDLSSNIIS 148
Query: 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 325
D + LK L NLE LNL I D + L+ L LK L+LS ++ S + L+ LTN
Sbjct: 149 D--ISPLKDLPNLEELNLSVNKISD--ITPLSNLTKLKRLDLSYNRI--SDISSLTNLTN 202
Query: 326 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
LE + LS+ ISD S LA L +L L+L +I+D ++ L LT L LDL I+
Sbjct: 203 LEELVLSYNEISDIS--PLANLPNLAGLDLSNNEISD--ISPLKDLTNLELLDLAENEIS 258
Query: 386 D 386
D
Sbjct: 259 D 259
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 86/258 (33%), Positives = 127/258 (49%), Gaps = 25/258 (9%)
Query: 96 DGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLM 155
D ++ + L NL SLSF + + + +NL LDL L L L
Sbjct: 40 DITVQDMWELENL-SLSFS-----SVRDLSGLEYAVNLESLDLSNSE--VPDLSPLAKLP 91
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215
KL L++ C D+ L L NL SL++S ++++D I+ L KL +L+L
Sbjct: 92 KLVKLDLSGCGI---EDLSLLPNLPNLISLRLSGNEISD--ISPLTKFSKLRMLDLSSNI 146
Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 275
++ L L +L LNL+ ++SD S + LK L+L +N I+D + L L
Sbjct: 147 ISDIS--PLKDLPNLEELNLSVNKISD--ITPLSNLTKLKRLDLSYNRISD--ISSLTNL 200
Query: 276 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 335
TNLE L L I D + L L NL L+LS+ ++ S + L LTNLE ++L+
Sbjct: 201 TNLEELVLSYNEISD--ISPLANLPNLAGLDLSNNEI--SDISPLKDLTNLELLDLAENE 256
Query: 336 ISDGSLRKLAGLSSLKSL 353
ISD SL L L+SL+ L
Sbjct: 257 ISDISL--LFNLTSLREL 272
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 76/246 (30%), Positives = 112/246 (45%), Gaps = 32/246 (13%)
Query: 75 IHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134
I ++D L++L +F GLE+ NL SL + + A L LV
Sbjct: 41 ITVQDMWELENLSLSFSSVRDLSGLEYA---VNLESLDLSNS---EVPDLSPLAKLPKLV 94
Query: 135 KLDLERC----------------TRIHGGLV-NLKGLMKLESLNIKWCNCITDSDMKPLS 177
KLDL C R+ G + ++ L K L + + SD+ PL
Sbjct: 95 KLDLSGCGIEDLSLLPNLPNLISLRLSGNEISDISPLTKFSKLRMLDLSSNIISDISPLK 154
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
L NL+ L +S +K++D I L L KL L+L ++ SL+ L +L L L+
Sbjct: 155 DLPNLEELNLSVNKISD--ITPLSNLTKLKRLDLSYNRISDIS--SLTNLTNLEELVLSY 210
Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV-NL 296
++SD + + +L L+L NEI+D + LK LTNLE L+L I D L+ NL
Sbjct: 211 NEISD--ISPLANLPNLAGLDLSNNEISD--ISPLKDLTNLELLDLAENEISDISLLFNL 266
Query: 297 TGLCNL 302
T L L
Sbjct: 267 TSLREL 272
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 78/256 (30%), Positives = 122/256 (47%), Gaps = 25/256 (9%)
Query: 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-S 195
D++ T ++ NL+ ++ E+L I+ IT DM L++L +S S V D S
Sbjct: 328 DIDEETVVNFNDSNLEEAVR-EALKIEEDEDITVQDM------WELENLSLSFSSVRDLS 380
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ Y L+ L L N E L L+ L L L+L+ C + D + +L
Sbjct: 381 GLEYAVNLESLDLSNSE-----VPDLSPLAKLPKLVKLDLSGCGIED--LSLLPNLPNLI 433
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 315
L L NEI+D + L + L L+L S I D + L L L+ L+L +V S
Sbjct: 434 SLRLSGNEISD--ISPLTKFSKLRMLDLSSNIISD--ISPLAKLTKLRFLDLYANEV--S 487
Query: 316 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 375
+ L+ LT L ++ S ++D S L L+ L+ L L +I D ++ L++LT L
Sbjct: 488 DVSPLAKLTKLRVLDFSQNKVNDIS--PLVKLTKLRVLELQYNKIND--ISPLSNLTNLI 543
Query: 376 HLDLFGARITDSGAAY 391
LDL G +I+D +
Sbjct: 544 GLDLTGNKISDISPLF 559
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 80/301 (26%), Positives = 130/301 (43%), Gaps = 70/301 (23%)
Query: 138 LERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SG 196
L+ + I + LK L LE LN+ N I SD+ PLS LT LK L +S ++++D S
Sbjct: 140 LDLSSNIISDISPLKDLPNLEELNLS-VNKI--SDITPLSNLTKLKRLDLSYNRISDISS 196
Query: 197 IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 256
+ L L++L L E ++ L+ L +L L+L+ ++SD + +L++
Sbjct: 197 LTNLTNLEELVLSYNEISDISP-----LANLPNLAGLDLSNNEISD--ISPLKDLTNLEL 249
Query: 257 LNLGFNEITD-----------ECLVHLKGL-------------------------TNLES 280
L+L NEI+D E V+ K E
Sbjct: 250 LDLAENEISDISLLFNLTSLRELYVYPKDFKMKMIMFIEKYEDVDEDIDYEDIDEDTFED 309
Query: 281 LNLDS------------CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 328
++LD+ I +E +VN NL+ ++ + + LE+
Sbjct: 310 IDLDNDEYIDVDIDEYIEDIDEETVVNFND-SNLEEAVREALKIEEDEDITVQDMWELEN 368
Query: 329 INLSFTGISDGSLRKLAGLS---SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
++LSF+ S+R L+GL +L+SL+L ++ D L+ L L L LDL G I
Sbjct: 369 LSLSFS-----SVRDLSGLEYAVNLESLDLSNSEVPD--LSPLAKLPKLVKLDLSGCGIE 421
Query: 386 D 386
D
Sbjct: 422 D 422
Score = 45.1 bits (105), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 104/227 (45%), Gaps = 22/227 (9%)
Query: 75 IHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134
I ++D L++L +F GLE+ NL SL + + A L LV
Sbjct: 358 ITVQDMWELENLSLSFSSVRDLSGLEYA---VNLESLDLSNS---EVPDLSPLAKLPKLV 411
Query: 135 KLDLERCTRIHGGLVNLKGLMKLESLNIKWC-NCITDSDMKPLSGLTNLKSLQISCSKVT 193
KLDL C G ++++ N I SD+ PL+ + L+ L +S + ++
Sbjct: 412 KLDLSGC----GIEDLSLLPNLPNLISLRLSGNEI--SDISPLTKFSKLRMLDLSSNIIS 465
Query: 194 DSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS 253
D I+ L L KL L+L V+ L+ L L L+ ++ +++D K+
Sbjct: 466 D--ISPLAKLTKLRFLDLYANEVSDVS--PLAKLTKLRVLDFSQNKVND--ISPLVKLTK 519
Query: 254 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EGLVNLTGL 299
L+VL L +N+I D + L LTNL L+L I D L +L+GL
Sbjct: 520 LRVLELQYNKIND--ISPLSNLTNLIGLDLTGNKISDISPLFSLSGL 564
>gi|223698625|gb|ACN18990.1| internalin A [Listeria monocytogenes]
gi|223698736|gb|ACN19064.1| internalin A [Listeria monocytogenes]
gi|223698739|gb|ACN19066.1| internalin A [Listeria monocytogenes]
gi|223698847|gb|ACN19138.1| internalin A [Listeria monocytogenes]
gi|223698904|gb|ACN19176.1| internalin A [Listeria monocytogenes]
gi|223698955|gb|ACN19210.1| internalin A [Listeria monocytogenes]
Length = 715
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 107/333 (32%), Positives = 169/333 (50%), Gaps = 36/333 (10%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 13 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 66
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 67 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 118
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 119 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 171
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 172 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 225
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
L GL L LEL++ Q+ + +S L NL + L F ISD + ++ L+ L+ L
Sbjct: 226 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRL 281
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
+++D +++L +LT + L +I+D
Sbjct: 282 FFYNNKVSD--VSSLANLTNINWLSAGHNQISD 312
>gi|223698883|gb|ACN19162.1| internalin A [Listeria monocytogenes]
Length = 715
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 107/333 (32%), Positives = 169/333 (50%), Gaps = 36/333 (10%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 13 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 66
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 67 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 118
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 119 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 171
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 172 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 225
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
L GL L LEL++ Q+ + +S L NL + L F ISD + ++ L+ L+ L
Sbjct: 226 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRL 281
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
+++D +++L +LT + L +I+D
Sbjct: 282 FFYNNKVSD--VSSLANLTNINWLSAGHNQISD 312
>gi|290997880|ref|XP_002681509.1| predicted protein [Naegleria gruberi]
gi|284095133|gb|EFC48765.1| predicted protein [Naegleria gruberi]
Length = 226
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 112/222 (50%), Gaps = 1/222 (0%)
Query: 160 LNIKWCNCITDSD-MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
+N+ + DSD +K +S + L +L + +++ D G + +++L L + + A
Sbjct: 5 VNVNVSENLLDSDNVKFISEMKQLVALFVPTNRIGDEGTKLISEMKQLISLGISKNQIGA 64
Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 278
+ L L L L++NR ++ D+G + SK+ L +L++G N+I + + ++ + L
Sbjct: 65 KGVKYLCKLKQLIALDINRNRIGDEGAKLISKMKQLTLLHVGDNQIGVKGVKYISEMKQL 124
Query: 279 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
L + GIGDEG ++G+ L L + ++G G + +S + L +++ + I D
Sbjct: 125 TCLYIYGNGIGDEGAKLISGMKQLTELSIGHNEIGDEGAKFISEMKQLTELSIFYNRIGD 184
Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 380
+ ++ + L L++ +I D G ++ + L L L+
Sbjct: 185 EGAKYISEMKQLTDLDIRHNRIGDKGEKLISGMKKLKRLCLY 226
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 93/182 (51%), Gaps = 5/182 (2%)
Query: 216 VTAACLDS-----LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
V+ LDS +S + L L + ++ D+G + S++ L L + N+I + +
Sbjct: 9 VSENLLDSDNVKFISEMKQLVALFVPTNRIGDEGTKLISEMKQLISLGISKNQIGAKGVK 68
Query: 271 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 330
+L L L +L+++ IGDEG ++ + L L + D Q+G G++++S + L +
Sbjct: 69 YLCKLKQLIALDINRNRIGDEGAKLISKMKQLTLLHVGDNQIGVKGVKYISEMKQLTCLY 128
Query: 331 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 390
+ GI D + ++G+ L L++ +I D G ++ + LT L +F RI D GA
Sbjct: 129 IYGNGIGDEGAKLISGMKQLTELSIGHNEIGDEGAKFISEMKQLTELSIFYNRIGDEGAK 188
Query: 391 YL 392
Y+
Sbjct: 189 YI 190
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 95/213 (44%), Gaps = 26/213 (12%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
+I D G + + + L SL +N I A+G+K L L+ LD+ R
Sbjct: 37 RIGDEGTKLISEMKQLISLGISKNQ-IGAKGVKYLCKLKQLIALDINR------------ 83
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
N I D K +S + L L + +++ G+ Y+ +++LT L +
Sbjct: 84 -------------NRIGDEGAKLISKMKQLTLLHVGDNQIGVKGVKYISEMKQLTCLYIY 130
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
G + +S + L L++ ++ D+G + S++ L L++ +N I DE ++
Sbjct: 131 GNGIGDEGAKLISGMKQLTELSIGHNEIGDEGAKFISEMKQLTELSIFYNRIGDEGAKYI 190
Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 305
+ L L++ IGD+G ++G+ LK L
Sbjct: 191 SEMKQLTDLDIRHNRIGDKGEKLISGMKKLKRL 223
>gi|29423714|gb|AAO73555.1| internalin A [Listeria monocytogenes]
Length = 743
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 116/358 (32%), Positives = 172/358 (48%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 41 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 94
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 95 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 146
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 147 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 199
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 200 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 253
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 254 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 311
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 312 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNY 367
>gi|219821261|gb|ACL37752.1| internalin A [Listeria monocytogenes]
Length = 742
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 106/329 (32%), Positives = 166/329 (50%), Gaps = 39/329 (11%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQL--SFGNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 252
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
L GL L LEL++ Q+ + +S L NL + L F ISD + ++ L+ L+ L
Sbjct: 253 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRL 308
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGA 382
+++D ++SL LT+++ A
Sbjct: 309 FFYNNKVSD-----VSSLANLTNINWLSA 332
>gi|428163352|gb|EKX32427.1| hypothetical protein GUITHDRAFT_121393 [Guillardia theta CCMP2712]
Length = 1894
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 82/288 (28%), Positives = 133/288 (46%), Gaps = 6/288 (2%)
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL--ERCTRIHGGLVNLKGLMKLESLN 161
GL++L SL + NN +T+ FAGL +L L L T I + GL L++L
Sbjct: 208 GLASLRSL-YLDNNELTSVPETVFAGLASLQTLYLYDNELTSIPATV--FAGLASLQTLY 264
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 221
+ + N +T GL +L+SL +S +++T GL L L L +T+
Sbjct: 265 LSY-NKLTSVPETVFDGLASLRSLYLSYNELTSVPETVFDGLASLQYLYLSSNKLTSVPA 323
Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 281
+ L SL L L+ +L+ F+ + SL+ L L N++T GL +L++L
Sbjct: 324 TVFAGLTSLQTLYLSGNELTSVPETVFTGLASLQTLYLSSNKLTSVPETVFNGLASLQTL 383
Query: 282 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 341
L S + GL +L+ L L D ++ S +GLT+L+S+ LS ++
Sbjct: 384 YLSSNKLTSVPATVFAGLASLQYLYLYDNELTSIPATVFAGLTSLQSLYLSSNKLTSVPE 443
Query: 342 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 389
GL+SL++L L + ++T L L L L+ +T A
Sbjct: 444 TVFDGLASLQTLYLSSNKLTSVPATVFNGLASLQTLYLYDNELTSIPA 491
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 76/282 (26%), Positives = 129/282 (45%), Gaps = 2/282 (0%)
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 163
GL++L +L + +N +T+ F GL +L L L GL L++L +
Sbjct: 472 GLASLQTL-YLYDNELTSIPATGFNGLASLQTLYLSSNELTSIPETVFAGLASLQTLYLS 530
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
N +T +GL +L++L +S +++T GL L L L +T+
Sbjct: 531 -GNELTSVPETVFAGLASLQTLYLSGNELTSVPETVFAGLASLQTLYLSSNELTSIPETV 589
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
+ L SL YL L+ +L+ F+ + SL+ L L +NE+T GL +L++L L
Sbjct: 590 FAGLASLQYLYLSSNKLTSVPETVFAGLASLQTLYLSYNELTSVPETVFNGLASLQTLYL 649
Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
+ GL +L+ L L D ++ S +GL +L S++L F ++
Sbjct: 650 SYNKLTSVPATVFAGLASLRSLGLYDNKLTSVPATVFAGLASLRSLSLDFNELTSIPETV 709
Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
AGL+SL++L L ++T L L +L L ++T
Sbjct: 710 FAGLTSLQTLYLYDNELTSVPETVFNGLASLQYLYLDNNKLT 751
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 77/278 (27%), Positives = 130/278 (46%), Gaps = 11/278 (3%)
Query: 117 NAITAQGMKAFAGLINL--VKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
N +T+ FAGL +L + LD + T + + N GL L++L + N +T
Sbjct: 148 NELTSVPETVFAGLASLQYLYLDNNKLTSVPATVFN--GLASLQTLYLS-SNKLTSVPET 204
Query: 175 PLSGLTNLKSLQI---SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
+GL +L+SL + + V ++ A L LQ L L + E + A L++L +L
Sbjct: 205 VFNGLASLRSLYLDNNELTSVPETVFAGLASLQTLYLYDNELTSIPATVFAGLASLQTL- 263
Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
YL+ N+ L+ F + SL+ L L +NE+T GL +L+ L L S +
Sbjct: 264 YLSYNK--LTSVPETVFDGLASLRSLYLSYNELTSVPETVFDGLASLQYLYLSSNKLTSV 321
Query: 292 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 351
GL +L+ L LS ++ S +GL +L+++ LS ++ GL+SL+
Sbjct: 322 PATVFAGLTSLQTLYLSGNELTSVPETVFTGLASLQTLYLSSNKLTSVPETVFNGLASLQ 381
Query: 352 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 389
+L L + ++T L L +L L+ +T A
Sbjct: 382 TLYLSSNKLTSVPATVFAGLASLQYLYLYDNELTSIPA 419
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 78/282 (27%), Positives = 126/282 (44%), Gaps = 2/282 (0%)
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 163
GL++L SL + N +T+ F GL +L L L GL L++L +
Sbjct: 280 GLASLRSL-YLSYNELTSVPETVFDGLASLQYLYLSSNKLTSVPATVFAGLTSLQTLYLS 338
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
N +T +GL +L++L +S +K+T GL L L L +T+
Sbjct: 339 -GNELTSVPETVFTGLASLQTLYLSSNKLTSVPETVFNGLASLQTLYLSSNKLTSVPATV 397
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
+ L SL YL L +L+ F+ + SL+ L L N++T GL +L++L L
Sbjct: 398 FAGLASLQYLYLYDNELTSIPATVFAGLTSLQSLYLSSNKLTSVPETVFDGLASLQTLYL 457
Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
S + GL +L+ L L D ++ S +GL +L+++ LS ++
Sbjct: 458 SSNKLTSVPATVFNGLASLQTLYLYDNELTSIPATGFNGLASLQTLYLSSNELTSIPETV 517
Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
AGL+SL++L L ++T L L L L G +T
Sbjct: 518 FAGLASLQTLYLSGNELTSVPETVFAGLASLQTLYLSGNELT 559
Score = 74.7 bits (182), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 88/332 (26%), Positives = 151/332 (45%), Gaps = 11/332 (3%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDF--NFCIQISDGGLEHLRGLSNLTSLSFR 114
+SL ++ LSG+++T ++LQ+L N I + L L L +
Sbjct: 546 ASLQTLYLSGNELTSVPETVFAGLASLQTLYLSSNELTSIPETVFAGLASLQYL----YL 601
Query: 115 RNNAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 172
+N +T+ FAGL +L L L T + + N GL L++L + + N +T
Sbjct: 602 SSNKLTSVPETVFAGLASLQTLYLSYNELTSVPETVFN--GLASLQTLYLSY-NKLTSVP 658
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
+GL +L+SL + +K+T GL L L+L+ +T+ + L SL
Sbjct: 659 ATVFAGLASLRSLGLYDNKLTSVPATVFAGLASLRSLSLDFNELTSIPETVFAGLTSLQT 718
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
L L +L+ F+ + SL+ L L N++T GL ++++L L +
Sbjct: 719 LYLYDNELTSVPETVFNGLASLQYLYLDNNKLTSIPETVFAGLASVQTLYLSGNELTSVP 778
Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
GL +L+ L +S ++ S GL +L++++LS+ ++ AGL+SL+S
Sbjct: 779 ETVFNGLASLQYLNVSSNELTSVPETVFDGLASLQTLDLSYNKLTSVPETVFAGLASLRS 838
Query: 353 LNLDARQITDTGLAALTSLTGLTHLDLFGARI 384
L LD ++T L L LDL R+
Sbjct: 839 LYLDNNELTSVPETVFAGLDSLWRLDLHSNRL 870
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 104/224 (46%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
N +T +GL +L+ L +S +K+T GL + +L L G +T+ +
Sbjct: 100 NKLTSVPATVFAGLASLQYLYLSSNKLTSIPETVFAGLASIRVLILSGNELTSVPETVFA 159
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
L SL YL L+ +L+ F+ + SL+ L L N++T GL +L SL LD+
Sbjct: 160 GLASLQYLYLDNNKLTSVPATVFNGLASLQTLYLSSNKLTSVPETVFNGLASLRSLYLDN 219
Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 345
+ GL +L+ L L D ++ S +GL +L+++ LS+ ++
Sbjct: 220 NELTSVPETVFAGLASLQTLYLYDNELTSIPATVFAGLASLQTLYLSYNKLTSVPETVFD 279
Query: 346 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 389
GL+SL+SL L ++T L L +L L ++T A
Sbjct: 280 GLASLRSLYLSYNELTSVPETVFDGLASLQYLYLSSNKLTSVPA 323
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 78/274 (28%), Positives = 126/274 (45%), Gaps = 5/274 (1%)
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 163
GL++L +L + +N +T+ F GL +L L L GL L+ L +
Sbjct: 352 GLASLQTL-YLSSNKLTSVPETVFNGLASLQTLYLSSNKLTSVPATVFAGLASLQYLYL- 409
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
+ N +T +GLT+L+SL +S +K+T GL L L L +T+
Sbjct: 410 YDNELTSIPATVFAGLTSLQSLYLSSNKLTSVPETVFDGLASLQTLYLSSNKLTSVPATV 469
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
+ L SL L L +L+ F+ + SL+ L L NE+T GL +L++L L
Sbjct: 470 FNGLASLQTLYLYDNELTSIPATGFNGLASLQTLYLSSNELTSIPETVFAGLASLQTLYL 529
Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
+ GL +L+ L LS ++ S +GL +L+++ LS ++
Sbjct: 530 SGNELTSVPETVFAGLASLQTLYLSGNELTSVPETVFAGLASLQTLYLSSNELTSIPETV 589
Query: 344 LAGLSSLKSLNLDARQIT---DTGLAALTSLTGL 374
AGL+SL+ L L + ++T +T A L SL L
Sbjct: 590 FAGLASLQYLYLSSNKLTSVPETVFAGLASLQTL 623
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 92/355 (25%), Positives = 157/355 (44%), Gaps = 31/355 (8%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+SL ++ LS +++T ++LQ+L ++ +++ GL++L SL +
Sbjct: 618 ASLQTLYLSYNELTSVPETVFNGLASLQTLYLSYN-KLTSVPATVFAGLASLRSLGLY-D 675
Query: 117 NAITAQGMKAFAGLINL--VKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
N +T+ FAGL +L + LD T I + GL L++L + + N +T
Sbjct: 676 NKLTSVPATVFAGLASLRSLSLDFNELTSIPETV--FAGLTSLQTLYL-YDNELTSVPET 732
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
+GL +L+ L + +K+T GL + L L G +T+ + L SL YLN
Sbjct: 733 VFNGLASLQYLYLDNNKLTSIPETVFAGLASVQTLYLSGNELTSVPETVFNGLASLQYLN 792
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
++ +L+ F + SL+ L+L +N++T GL +L SL LD+ +
Sbjct: 793 VSSNELTSVPETVFDGLASLQTLDLSYNKLTSVPETVFAGLASLRSLYLDNNELTSVPET 852
Query: 295 NLTGLCNLKCLELSDTQVGSSGLR------------------------HLSGLTNLESIN 330
GL +L L+L ++ S L L GL +LE++
Sbjct: 853 VFAGLDSLWRLDLHSNRLASLALSLFYDCHDLMELYLNNNLLSGLLPGSLDGLVSLEALY 912
Query: 331 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
L ++D S A LSSL +L L +++ A L LT L + R+T
Sbjct: 913 LHSNQLADISSDVFAQLSSLTTLTLHNNRLSSLSPGAFAGLARLTTLSIHHNRLT 967
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 76/274 (27%), Positives = 125/274 (45%), Gaps = 5/274 (1%)
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 163
GL++L L + +N +T+ FAGL +L L L GL L++L +
Sbjct: 304 GLASLQYL-YLSSNKLTSVPATVFAGLTSLQTLYLSGNELTSVPETVFTGLASLQTLYLS 362
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
N +T +GL +L++L +S +K+T GL L L L +T+
Sbjct: 363 -SNKLTSVPETVFNGLASLQTLYLSSNKLTSVPATVFAGLASLQYLYLYDNELTSIPATV 421
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
+ L SL L L+ +L+ F + SL+ L L N++T GL +L++L L
Sbjct: 422 FAGLTSLQSLYLSSNKLTSVPETVFDGLASLQTLYLSSNKLTSVPATVFNGLASLQTLYL 481
Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
+ GL +L+ L LS ++ S +GL +L+++ LS ++
Sbjct: 482 YDNELTSIPATGFNGLASLQTLYLSSNELTSIPETVFAGLASLQTLYLSGNELTSVPETV 541
Query: 344 LAGLSSLKSLNLDARQIT---DTGLAALTSLTGL 374
AGL+SL++L L ++T +T A L SL L
Sbjct: 542 FAGLASLQTLYLSGNELTSVPETVFAGLASLQTL 575
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 98/375 (26%), Positives = 151/375 (40%), Gaps = 73/375 (19%)
Query: 85 SLDFNFCIQISD---GGLEHLRGL----SNLTSLS-------------FRRNNAITAQGM 124
SLDFN I + GL L+ L + LTS+ + NN +T+
Sbjct: 696 SLDFNELTSIPETVFAGLTSLQTLYLYDNELTSVPETVFNGLASLQYLYLDNNKLTSIPE 755
Query: 125 KAFAGLINLVKLDLE--RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNL 182
FAGL ++ L L T + + N GL L+ LN+ N +T GL +L
Sbjct: 756 TVFAGLASVQTLYLSGNELTSVPETVFN--GLASLQYLNVS-SNELTSVPETVFDGLASL 812
Query: 183 KSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA------ACLDSLSALG-------- 228
++L +S +K+T GL L L L+ +T+ A LDSL L
Sbjct: 813 QTLDLSYNKLTSVPETVFAGLASLRSLYLDNNELTSVPETVFAGLDSLWRLDLHSNRLAS 872
Query: 229 ---SLFY-------------------------------LNLNRCQLSDDGCEKFSKIGSL 254
SLFY L L+ QL+D + F+++ SL
Sbjct: 873 LALSLFYDCHDLMELYLNNNLLSGLLPGSLDGLVSLEALYLHSNQLADISSDVFAQLSSL 932
Query: 255 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 314
L L N ++ GL L +L++ + GL L L+L D + S
Sbjct: 933 TTLTLHNNRLSSLSPGAFAGLARLTTLSIHHNRLTRLSPGAFQGLSTLATLDLHDNHLTS 992
Query: 315 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 374
L+GL + +++LS ++D + L L+ L++L+LD Q+T L L GL
Sbjct: 993 LTAGALTGLDAMRALDLSSNKLADLPAQALHNLTGLRNLSLDDNQLTSLSAGVLEPLAGL 1052
Query: 375 THLDLFGARITDSGA 389
+L L R+ + A
Sbjct: 1053 EYLWLSHNRLAEVPA 1067
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 89/197 (45%), Gaps = 6/197 (3%)
Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265
LT + L G +T+ + L SL YL L+ +L+ F+ + S++VL L NE+T
Sbjct: 92 LTEIRLSGNKLTSVPATVFAGLASLQYLYLSSNKLTSIPETVFAGLASIRVLILSGNELT 151
Query: 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 325
GL +L+ L LD+ + GL +L+ L LS ++ S +GL +
Sbjct: 152 SVPETVFAGLASLQYLYLDNNKLTSVPATVFNGLASLQTLYLSSNKLTSVPETVFNGLAS 211
Query: 326 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
L S+ L ++ AGL+SL++L L ++T L L L L ++T
Sbjct: 212 LRSLYLDNNELTSVPETVFAGLASLQTLYLYDNELTSIPATVFAGLASLQTLYLSYNKLT 271
Query: 386 D------SGAAYLRSKF 396
G A LRS +
Sbjct: 272 SVPETVFDGLASLRSLY 288
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 92/331 (27%), Positives = 144/331 (43%), Gaps = 34/331 (10%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVN 150
Q++D + LS+LT+L+ NN +++ AFAGL L L + R TR+ G
Sbjct: 917 QLADISSDVFAQLSSLTTLTLH-NNRLSSLSPGAFAGLARLTTLSIHHNRLTRLSPG--A 973
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
+GL L +L++ N +T L+GL +++L +S +K+ D L L L L+
Sbjct: 974 FQGLSTLATLDLH-DNHLTSLTAGALTGLDAMRALDLSSNKLADLPAQALHNLTGLRNLS 1032
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
L+ +T+ L L L YL L+ +L++ + SL+ L L N +T +
Sbjct: 1033 LDDNQLTSLSAGVLEPLAGLEYLWLSHNRLAEVPA-GLGSLASLRYLLLDHNPLTSLDVS 1091
Query: 271 HLKGLTNLESLNLDS---CGIGDEGLVNLTGLCNLKCLELSDTQVGSSG---LRHLSGLT 324
L +L +L ++S + + L L L + D Q S+ L LS LT
Sbjct: 1092 LLDNKPDLRALGVNSDAFKALSAQRPSVLETLLELWLCKSDDDQDQSAAGELLDKLSQLT 1151
Query: 325 NLESINLSFTGISDGSLRKLAG---------------------LSSLKSLNLDARQITDT 363
L + I G L L+ L SL+SL L +T
Sbjct: 1152 GLYLFGFDQSLIHAGMLSSLSSVRVLWLEDNLLDQLPPGTFDQLPSLQSLYLIHNGLTAV 1211
Query: 364 GLAALTSLTGLTHLDLFGARITDSGAAYLRS 394
+AAL++L+GLT L + IT A RS
Sbjct: 1212 PVAALSNLSGLTELHIVNDGITRVPAGAFRS 1242
>gi|887862|gb|AAA69530.1| internalin, partial [Listeria monocytogenes]
Length = 344
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 107/329 (32%), Positives = 167/329 (50%), Gaps = 39/329 (11%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 24 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 77
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L++ N +TD +KPL
Sbjct: 78 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSL--GNQVTD--LKPL 129
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 130 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 182
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 183 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLPGLTKLTELKLGANQISN--I 236
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
L GL L LEL++ Q+ + +S L NL + L F ISD + ++ L+ L+ L
Sbjct: 237 XPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRL 292
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGA 382
+++D ++SL LT+++ A
Sbjct: 293 FFYNNKVSD-----VSSLANLTNINWLSA 316
>gi|219821354|gb|ACL37814.1| internalin A [Listeria monocytogenes]
Length = 739
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 115/358 (32%), Positives = 171/358 (47%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL--SFGNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 252
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
+ GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 253 SPIAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 310
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 311 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNY 366
>gi|194239378|emb|CAQ76829.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 106/329 (32%), Positives = 166/329 (50%), Gaps = 39/329 (11%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
L GL L LEL++ Q+ + +S L NL + L F ISD + ++ L+ L+ L
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNKISD--ISPVSSLTKLQRL 366
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGA 382
+++D ++SL LT+++ A
Sbjct: 367 FFYNNKVSD-----VSSLANLTNINWLSA 390
>gi|417302467|ref|ZP_12089567.1| conserved hypothetical protein, secreted [Rhodopirellula baltica
WH47]
gi|327541207|gb|EGF27751.1| conserved hypothetical protein, secreted [Rhodopirellula baltica
WH47]
Length = 341
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 104/226 (46%), Gaps = 2/226 (0%)
Query: 170 DSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 229
D +K LS + + L + + +D + L L L L + G A S+S L +
Sbjct: 83 DGAVKLLSNTSTVSELFMPAAAWSDGTVLRLAALPNLKRLRVYGKAFDDAKAKSISGLPA 142
Query: 230 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 289
L + ++DDG +++ L+ ++L + +TD+ L + L L LNL I
Sbjct: 143 LVAVTFQDTSVTDDGASVLAELNELQDVSLMNSPVTDKTLASISTLPKLTKLNLRGTKIT 202
Query: 290 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 349
E ++ L L+ LEL++T G G+ ++ + LE INL T I + SL+ G +S
Sbjct: 203 GEAFEPISKLP-LESLELAETDFGPEGMPAIANIEGLEKINLWLTKIDNESLKAFEGKTS 261
Query: 350 LKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRS 394
L LN+D IT+ + + SL L L L ++ L+
Sbjct: 262 LTVLNVDNCPAITEEAIPVIISLPHLKLLHLGKTSVSPDALPQLKP 307
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 103/226 (45%), Gaps = 25/226 (11%)
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK 205
G ++ L L L+ L + + D+ K +SGL L ++ + VTD G + L L +
Sbjct: 108 GTVLRLAALPNLKRLRV-YGKAFDDAKAKSISGLPALVAVTFQDTSVTDDGASVLAELNE 166
Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK--------------- 250
L ++L PVT L S+S L L LNL +++ + E SK
Sbjct: 167 LQDVSLMNSPVTDKTLASISTLPKLTKLNLRGTKITGEAFEPISKLPLESLELAETDFGP 226
Query: 251 --------IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCN 301
I L+ +NL +I +E L +G T+L LN+D+C I +E + + L +
Sbjct: 227 EGMPAIANIEGLEKINLWLTKIDNESLKAFEGKTSLTVLNVDNCPAITEEAIPVIISLPH 286
Query: 302 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 347
LK L L T V L L L LE++ ++ G+ + ++L +
Sbjct: 287 LKLLHLGKTSVSPDALPQLKPLQELETLFVTNLGLEEEPAKELEAM 332
Score = 42.4 bits (98), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 64/151 (42%), Gaps = 3/151 (1%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L V L S VTD L + L L+ +I+ E + L L SL +
Sbjct: 167 LQDVSLMNSPVTDKTLASISTLPKLTKLNLR-GTKITGEAFEPISKLP-LESLELAETD- 223
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
+GM A A + L K++L + L +G L LN+ C IT+ + +
Sbjct: 224 FGPEGMPAIANIEGLEKINLWLTKIDNESLKAFEGKTSLTVLNVDNCPAITEEAIPVIIS 283
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLL 209
L +LK L + + V+ + LK LQ+L L
Sbjct: 284 LPHLKLLHLGKTSVSPDALPQLKPLQELETL 314
>gi|328719510|ref|XP_001948716.2| PREDICTED: f-box/LRR-repeat protein 14-like [Acyrthosiphon pisum]
Length = 467
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 105/336 (31%), Positives = 173/336 (51%), Gaps = 52/336 (15%)
Query: 52 IASQGSSLLSVDLSG-SDVTDSGL--IHLKDCSNLQSLDFNFCIQISDGGL----EHLRG 104
I +L+S+++SG + D L + L+ N+ L+ + C Q++DGGL + LRG
Sbjct: 156 IVQNVPNLVSLNMSGCYHIKDEDLHQMFLEHHPNITELNLSLCKQLTDGGLIRIADTLRG 215
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER-CTRIHG-GLVNLKGLMK------ 156
L T L + + IT +G A + +K R C + GL ++ G K
Sbjct: 216 L---TRLEIQGCSYITNKGFSHIARKLKKLKYLNLRSCWHLSDVGLSHISGASKDSTDGN 272
Query: 157 --LESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLE 212
LE L ++ C ITD +K +S GL +L+SL +S C +TD+G+ Y+ + L LNL
Sbjct: 273 AQLEFLGLQDCQHITDEGLKYVSEGLRSLRSLNLSFCVNITDTGLNYVSRMNTLDELNLS 332
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVH 271
C D++S +G + YL+ +GC +K+GSL N+ F ++I D+ L+H
Sbjct: 333 AC-------DNISDIG-IGYLS--------EGC---TKLGSL---NVSFCDKIGDQALLH 370
Query: 272 L-KGLTNLESLNLDSCGIGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLSGLTN-LE 327
+ GL L +L+L SC I D+G++ ++ L NL+ L + V GL HLS L
Sbjct: 371 VSHGLYGLHTLSLGSCQISDDGILYISKSLRNLEVLNIGQCNSVTDKGLEHLSDSCKLLR 430
Query: 328 SINL-SFTGISDGSLRKLAGLSSLK--SLNLDARQI 360
SI+L T I+ + K+ + +++ ++N D Q+
Sbjct: 431 SIDLYGCTKITKEAKEKILKMPNIRRDTVNEDLWQL 466
Score = 45.8 bits (107), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 81/156 (51%), Gaps = 6/156 (3%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
+ D+ + ++ SL S++LS ++TD+GL ++ + L L+ + C ISD G+ +L
Sbjct: 286 ITDEGLKYVSEGLRSLRSLNLSFCVNITDTGLNYVSRMNTLDELNLSACDNISDIGIGYL 345
Query: 103 -RGLSNLTSLSFRRNNAITAQG-MKAFAGLINLVKLDLERCTRIHGGLVNL-KGLMKLES 159
G + L SL+ + I Q + GL L L L C G++ + K L LE
Sbjct: 346 SEGCTKLGSLNVSFCDKIGDQALLHVSHGLYGLHTLSLGSCQISDDGILYISKSLRNLEV 405
Query: 160 LNIKWCNCITDSDMKPLSGLTN-LKSLQI-SCSKVT 193
LNI CN +TD ++ LS L+S+ + C+K+T
Sbjct: 406 LNIGQCNSVTDKGLEHLSDSCKLLRSIDLYGCTKIT 441
>gi|320169501|gb|EFW46400.1| tyrosine-protein kinase Src42A [Capsaspora owczarzaki ATCC 30864]
Length = 1286
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 95/329 (28%), Positives = 132/329 (40%), Gaps = 29/329 (8%)
Query: 86 LDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH 145
L+FN I L GLS L R+N IT+ AF GL L ++D+
Sbjct: 188 LEFNQITSIPASVFTDLTGLSVLV----LRSNNITSIPPYAFTGLTALSQIDVSINLITS 243
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK 205
GL L++ + N IT +GLT L L + +++T GL
Sbjct: 244 IPAFAFAGLTAATYLDL-YINQITSISDSAFTGLTALTFLNMDNNRLTSILSTTFAGLTA 302
Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265
L L L VT+ ++ + L +L L L Q++ F + L L+L N IT
Sbjct: 303 LQYLYLWSNQVTSIAPNTFAGLTALNSLQLYDNQITSIPANAFDDLSVLNTLSLNDNLIT 362
Query: 266 DECLVHLKGLTNLESLNLDS---CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 322
LT+L+ L+L + I +LT L +L T + S+ LS
Sbjct: 363 SVPASAFANLTSLQYLSLFNNRITSIAANAFDDLTALGSLHLHTNRITNIPSTAFASLSA 422
Query: 323 LTNLESINLSFTGISDGSLRKLA---------------------GLSSLKSLNLDARQIT 361
LT L N S T IS G+ L+ G++SLK L L QIT
Sbjct: 423 LTQLHLYNNSITSISAGTFSSLSAVTYMYMYDNQISSIPANTFTGMTSLKLLYLSGNQIT 482
Query: 362 DTGLAALTSLTGLTHLDLFGARITDSGAA 390
A + LT LT L L+ RIT AA
Sbjct: 483 SVSANAFSGLTALTQLSLYLNRITSISAA 511
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 84/299 (28%), Positives = 132/299 (44%), Gaps = 6/299 (2%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVN 150
QI+ + GL+ + SL NN +T AF GL L +L L R + + G
Sbjct: 96 QITYIPADAFTGLTAVISLQLN-NNRLTDISANAFTGLSALSQLFLNNNRLSSVPAGA-- 152
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
GL L+ L + N IT +GLT L L++ +++T + L L++L
Sbjct: 153 FAGLPALKQLQLN-SNRITSISATLFTGLTALTWLRLEFNQITSIPASVFTDLTGLSVLV 211
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
L +T+ + + L +L ++++ ++ F+ + + L+L N+IT
Sbjct: 212 LRSNNITSIPPYAFTGLTALSQIDVSINLITSIPAFAFAGLTAATYLDLYINQITSISDS 271
Query: 271 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 330
GLT L LN+D+ + GL L+ L L QV S +GLT L S+
Sbjct: 272 AFTGLTALTFLNMDNNRLTSILSTTFAGLTALQYLYLWSNQVTSIAPNTFAGLTALNSLQ 331
Query: 331 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 389
L I+ LS L +L+L+ IT +A +LT L +L LF RIT A
Sbjct: 332 LYDNQITSIPANAFDDLSVLNTLSLNDNLITSVPASAFANLTSLQYLSLFNNRITSIAA 390
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 89/302 (29%), Positives = 131/302 (43%), Gaps = 35/302 (11%)
Query: 117 NAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
N IT+ AF GL L L+++ R T I GL L+ L + W N +T
Sbjct: 263 NQITSISDSAFTGLTALTFLNMDNNRLTSILS--TTFAGLTALQYLYL-WSNQVTSIAPN 319
Query: 175 PLSGLTNLKSLQISCSKVTD---------------------------SGIAYLKGLQKLT 207
+GLT L SLQ+ +++T S A L LQ L+
Sbjct: 320 TFAGLTALNSLQLYDNQITSIPANAFDDLSVLNTLSLNDNLITSVPASAFANLTSLQYLS 379
Query: 208 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 267
L N + A D L+ALGSL +L+ NR +++ F+ + +L L+L N IT
Sbjct: 380 LFNNRITSIAANAFDDLTALGSL-HLHTNR--ITNIPSTAFASLSALTQLHLYNNSITSI 436
Query: 268 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 327
L+ + + + I TG+ +LK L LS Q+ S SGLT L
Sbjct: 437 SAGTFSSLSAVTYMYMYDNQISSIPANTFTGMTSLKLLYLSGNQITSVSANAFSGLTALT 496
Query: 328 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 387
++L I+ S GL++L +L+L QI+ +A T LT L L L+ +IT
Sbjct: 497 QLSLYLNRITSISAAAFPGLTALLTLSLSDNQISSIPSSAFTDLTLLKFLYLYNNQITSI 556
Query: 388 GA 389
A
Sbjct: 557 AA 558
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 75/282 (26%), Positives = 120/282 (42%), Gaps = 25/282 (8%)
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 163
G+ N T+ + NN IT+ AF GL L L +++G
Sbjct: 58 GIPNTTTQLYLNNNQITSIPTSAFPGLTVLQIL------QVYG----------------- 94
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
N IT +GLT + SLQ++ +++TD GL L+ L L +++ +
Sbjct: 95 --NQITYIPADAFTGLTAVISLQLNNNRLTDISANAFTGLSALSQLFLNNNRLSSVPAGA 152
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
+ L +L L LN +++ F+ + +L L L FN+IT LT L L L
Sbjct: 153 FAGLPALKQLQLNSNRITSISATLFTGLTALTWLRLEFNQITSIPASVFTDLTGLSVLVL 212
Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
S I TGL L +++S + S +GLT ++L I+ S
Sbjct: 213 RSNNITSIPPYAFTGLTALSQIDVSINLITSIPAFAFAGLTAATYLDLYINQITSISDSA 272
Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
GL++L LN+D ++T LT L +L L+ ++T
Sbjct: 273 FTGLTALTFLNMDNNRLTSILSTTFAGLTALQYLYLWSNQVT 314
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 79/279 (28%), Positives = 116/279 (41%), Gaps = 8/279 (2%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL--INLVKLDLERCTRIHG-GLV 149
Q++ GL+ L SL +N IT+ AF L +N + L+ T +
Sbjct: 312 QVTSIAPNTFAGLTALNSLQLY-DNQITSIPANAFDDLSVLNTLSLNDNLITSVPASAFA 370
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL 209
NL L L N N IT LT L SL + +++T+ L LT L
Sbjct: 371 NLTSLQYLSLFN----NRITSIAANAFDDLTALGSLHLHTNRITNIPSTAFASLSALTQL 426
Query: 210 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
+L +T+ + S+L ++ Y+ + Q+S F+ + SLK+L L N+IT
Sbjct: 427 HLYNNSITSISAGTFSSLSAVTYMYMYDNQISSIPANTFTGMTSLKLLYLSGNQITSVSA 486
Query: 270 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 329
GLT L L+L I GL L L LSD Q+ S + LT L+ +
Sbjct: 487 NAFSGLTALTQLSLYLNRITSISAAAFPGLTALLTLSLSDNQISSIPSSAFTDLTLLKFL 546
Query: 330 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 368
L I+ + GL +L +L L IT T A
Sbjct: 547 YLYNNQITSIAANAFVGLPALSTLLLHNNTITSTFATAF 585
Score = 41.2 bits (95), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 60/134 (44%)
Query: 257 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 316
L L N+IT GLT L+ L + I TGL + L+L++ ++
Sbjct: 66 LYLNNNQITSIPTSAFPGLTVLQILQVYGNQITYIPADAFTGLTAVISLQLNNNRLTDIS 125
Query: 317 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 376
+GL+ L + L+ +S AGL +LK L L++ +IT T LT LT
Sbjct: 126 ANAFTGLSALSQLFLNNNRLSSVPAGAFAGLPALKQLQLNSNRITSISATLFTGLTALTW 185
Query: 377 LDLFGARITDSGAA 390
L L +IT A+
Sbjct: 186 LRLEFNQITSIPAS 199
>gi|290984372|ref|XP_002674901.1| predicted protein [Naegleria gruberi]
gi|284088494|gb|EFC42157.1| predicted protein [Naegleria gruberi]
Length = 599
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 74/297 (24%), Positives = 141/297 (47%), Gaps = 5/297 (1%)
Query: 100 EHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 159
+ +R ++ LT L F +N + +G + L NL L + G L + KL +
Sbjct: 306 DFIREMNQLTRLEFYGSN-LEPKGFDPISHLSNLTFLTIRGRNIADGDLECIGQFKKLTT 364
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
LN+ CN + K + GL NL L +S +K+ + + L+ LT L++ G +
Sbjct: 365 LNVPSCNI--NQGFKSICGLKNLTFLDLSYNKI--ESVESITNLKSLTQLDINGNRIGHE 420
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
S+S L +L L + + D+G + S + L L + N+I+ E + L
Sbjct: 421 GAKSISQLDNLTNLQIGHNLIQDEGIKYLSTMQCLTTLGVAENQISIEGAKFISKSHQLT 480
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
SL+L + I EG L+ L NL L + ++ G +++S + L +++++ I+D
Sbjct: 481 SLDLTNNVIETEGAKILSELNNLTGLFVYGNRIRDEGAKYISTMQQLTILDIAYNEITDE 540
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRSKF 396
+ ++ L L +L + + +I D G ++ + LT LD+ +++ + LR ++
Sbjct: 541 GAKAISNLDQLSTLYIYSNEICDEGAKSICGMKQLTILDIDYNVLSEEVSNQLRMEY 597
Score = 77.8 bits (190), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 94/402 (23%), Positives = 169/402 (42%), Gaps = 68/402 (16%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L S+++ + + G H+ L LD N + I + G+E + + LT L
Sbjct: 167 SKLKELTSLEIGDNHLKSEGAAHIAQMRKLTFLDINTNM-IGNEGIELISRMEQLTDLDV 225
Query: 114 RRNNAITAQGMKAFAGLINLVKLDL-----------------------ERCTRI-HGGLV 149
NN I ++G+K+ + +L L++ C I G
Sbjct: 226 MDNN-IRSEGVKSLCKMKHLTNLNIGNNPIEDEGAILLGEMKQLKNLITACNNIGMKGFS 284
Query: 150 NLKGLMKLESLNI-----KWCNCITDSD----------------MKPLSGLTNLKSLQIS 188
+L L+ LESL I K + I + + P+S L+NL L I
Sbjct: 285 SLSTLLNLESLVILGLDGKSTDFIREMNQLTRLEFYGSNLEPKGFDPISHLSNLTFLTIR 344
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA---------------------CLDSLSAL 227
+ D + + +KLT LN+ C + ++S++ L
Sbjct: 345 GRNIADGDLECIGQFKKLTTLNVPSCNINQGFKSICGLKNLTFLDLSYNKIESVESITNL 404
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
SL L++N ++ +G + S++ +L L +G N I DE + +L + L +L +
Sbjct: 405 KSLTQLDINGNRIGHEGAKSISQLDNLTNLQIGHNLIQDEGIKYLSTMQCLTTLGVAENQ 464
Query: 288 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 347
I EG ++ L L+L++ + + G + LS L NL + + I D + ++ +
Sbjct: 465 ISIEGAKFISKSHQLTSLDLTNNVIETEGAKILSELNNLTGLFVYGNRIRDEGAKYISTM 524
Query: 348 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 389
L L++ +ITD G A+++L L+ L ++ I D GA
Sbjct: 525 QQLTILDIAYNEITDEGAKAISNLDQLSTLYIYSNEICDEGA 566
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 99/197 (50%)
Query: 185 LQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 244
L+IS ++ + ++ +++LT L++ + ++S L L LN+ + ++ +G
Sbjct: 103 LEISYCRLEAEDVNFIGEMKQLTELDISLNNINCKGAITISQLSKLTKLNVYQTKMGVEG 162
Query: 245 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 304
++ SK+ L L +G N + E H+ + L L++++ IG+EG+ ++ + L
Sbjct: 163 AKELSKLKELTSLEIGDNHLKSEGAAHIAQMRKLTFLDINTNMIGNEGIELISRMEQLTD 222
Query: 305 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 364
L++ D + S G++ L + +L ++N+ I D L + LK+L I G
Sbjct: 223 LDVMDNNIRSEGVKSLCKMKHLTNLNIGNNPIEDEGAILLGEMKQLKNLITACNNIGMKG 282
Query: 365 LAALTSLTGLTHLDLFG 381
++L++L L L + G
Sbjct: 283 FSSLSTLLNLESLVILG 299
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 77/166 (46%)
Query: 227 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 286
+ + L ++ C+L + ++ L L++ N I + + + L+ L LN+
Sbjct: 97 MKGMIRLEISYCRLEAEDVNFIGEMKQLTELDISLNNINCKGAITISQLSKLTKLNVYQT 156
Query: 287 GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG 346
+G EG L+ L L LE+ D + S G H++ + L ++++ I + + ++
Sbjct: 157 KMGVEGAKELSKLKELTSLEIGDNHLKSEGAAHIAQMRKLTFLDINTNMIGNEGIELISR 216
Query: 347 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
+ L L++ I G+ +L + LT+L++ I D GA L
Sbjct: 217 MEQLTDLDVMDNNIRSEGVKSLCKMKHLTNLNIGNNPIEDEGAILL 262
>gi|441470006|emb|CCQ19761.1| Internalin-A [Listeria monocytogenes]
Length = 489
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 115/358 (32%), Positives = 172/358 (48%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL--SFGNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNY 424
>gi|327272147|ref|XP_003220847.1| PREDICTED: f-box/LRR-repeat protein 14-like [Anolis carolinensis]
Length = 400
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 103/331 (31%), Positives = 170/331 (51%), Gaps = 56/331 (16%)
Query: 61 SVDLSG-SDVTDSGLIH--LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
S++LSG ++TD+GL H + + S+L++L+ + C QI+D L +
Sbjct: 94 SLNLSGCYNLTDNGLGHAFVAEISSLRALNLSLCKQITDSSLGRI--------------- 138
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRI--HGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
AQ +K L L+L C+ I G L+ GL +L+SLN++ C ++D +
Sbjct: 139 ---AQYLKG------LEALELGGCSNITNTGLLLVAWGLPRLKSLNLRSCRHLSDVGIGH 189
Query: 176 LSGLTN--------LKSLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSL 224
L+G+T L+ L + C K++D + +L +GL +L LNL C ++ A L L
Sbjct: 190 LAGMTRSAAEGCLGLEQLTLQDCQKLSDLSLKHLSRGLSRLRQLNLSFCGGISDAGLLHL 249
Query: 225 SALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLE 279
S + L LNL C +SD G + GSL++ L++ F +++ D+ L ++ +GL L
Sbjct: 250 SHMSCLRVLNLRSCDNISDTGIMHLAT-GSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLR 308
Query: 280 SLNLDSCGIGDEGL----VNLTGLCNL---KCLELSDTQVGSSGLRHLSGLTNLESINLS 332
SL+L SC I DEG+ + GL L +C+ ++D + HLS LT ++
Sbjct: 309 SLSLCSCHISDEGINRMVRQMHGLRTLNIGQCVRITDKGLELIA-EHLSQLTGIDLYGC- 366
Query: 333 FTGISDGSLRKLAGLSSLKSLNLDARQITDT 363
T I+ L ++ L LK LNL Q+T++
Sbjct: 367 -TRITKRGLERITQLPCLKVLNLGLWQMTES 396
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 103/312 (33%), Positives = 159/312 (50%), Gaps = 32/312 (10%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM + L+L C + G + + L +
Sbjct: 68 RGIRRVQILSLRRSLSYVIQGMA------EIESLNLSGCYNLTDNGLGHAFVAEISSLRA 121
Query: 160 LNIKWCNCITDSDMKPLSG-LTNLKSLQI-SCSKVTDSGIAYLK-GLQKLTLLNLEGCPV 216
LN+ C ITDS + ++ L L++L++ CS +T++G+ + GL +L LNL C
Sbjct: 122 LNLSLCKQITDSSLGRIAQYLKGLEALELGGCSNITNTGLLLVAWGLPRLKSLNLRSCRH 181
Query: 217 TA-------ACLDSLSALG--SLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-NEI 264
+ A + +A G L L L CQ LSD + S+ + L+ LNL F I
Sbjct: 182 LSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLSDLSLKHLSRGLSRLRQLNLSFCGGI 241
Query: 265 TDECLVHLKGLTNLESLNLDSC-GIGDEGLVNL-TGLCNLKCLELSDT-QVGSSGLRHLS 321
+D L+HL ++ L LNL SC I D G+++L TG L L++S +VG L +++
Sbjct: 242 SDAGLLHLSHMSCLRVLNLRSCDNISDTGIMHLATGSLRLSGLDVSFCDKVGDQSLAYIA 301
Query: 322 -GLTNLESINLSFTGISD-GSLRKLAGLSSLKSLNL-DARQITDTGLAALTS-LTGLTHL 377
GL L S++L ISD G R + + L++LN+ +ITD GL + L+ LT +
Sbjct: 302 QGLDGLRSLSLCSCHISDEGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGI 361
Query: 378 DLFG-ARITDSG 388
DL+G RIT G
Sbjct: 362 DLYGCTRITKRG 373
>gi|223698748|gb|ACN19072.1| truncated internalin A [Listeria monocytogenes]
gi|223698961|gb|ACN19214.1| truncated internalin A [Listeria monocytogenes]
Length = 491
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 115/358 (32%), Positives = 172/358 (48%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 13 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 66
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 67 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL--SFGNQVTD--LKPL 118
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 119 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 171
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 172 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 225
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 226 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 283
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 284 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNY 339
>gi|150371828|dbj|BAF65703.1| internalin A [Listeria monocytogenes]
Length = 526
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 115/358 (32%), Positives = 172/358 (48%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL--SFGNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNY 424
>gi|259489824|ref|NP_001159243.1| uncharacterized protein LOC100304332 [Zea mays]
gi|223942967|gb|ACN25567.1| unknown [Zea mays]
gi|413920256|gb|AFW60188.1| hypothetical protein ZEAMMB73_234209 [Zea mays]
Length = 648
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 115/431 (26%), Positives = 205/431 (47%), Gaps = 51/431 (11%)
Query: 11 FNELVYSRCL--TEVSLE--AFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG 66
+LV +CL T+V L A LQ L L ++D +D++A + L S+D+S
Sbjct: 147 LRDLVMDKCLGVTDVGLAKVAVGCPGLQSLSLKWCREISDIGVDLLAKKCPQLRSLDISY 206
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
VT+ L L L+ + C+ + D GL+ L S+L S+ R + +++ G+ +
Sbjct: 207 LKVTNESLRSLSTLEKLEDIAMVSCLFVDDDGLQMLSMCSSLQSIDVARCHHVSSLGLAS 266
Query: 127 FA-GLINLVKL-------DLERCT--------------RIHGGLV---NLKGL----MKL 157
G +L K+ ++E C R+ G + NL+ + L
Sbjct: 267 LMDGQRSLRKINVAHSLHEIEACVLSKLSTIGETLTVLRLDGLEIFASNLQAIGSTCKNL 326
Query: 158 ESLNIKWCNCITDSDMKPL-SGLTNLKSLQISCSK-VTDSGIAYL-KGLQKLTLLNLEGC 214
+ + CN +TD + L + +L+++ ++C +T++ +A + + +K+ L LE C
Sbjct: 327 VEIGLSKCNGVTDDGIVSLVARCRDLRTIDVTCCHLLTNAALAAIAENCRKIECLRLESC 386
Query: 215 P-VTAACLDSLSALGS-LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVH 271
P V+ L+S++ L S L ++L C+++D ++ + L +L LG + I+DE LV+
Sbjct: 387 PFVSEKGLESIATLCSDLKEIDLTDCRINDAALQQLASCSELLILKLGLCSSISDEGLVY 446
Query: 272 LKG-LTNLESLNLDSC-GIGDEGLVNLTGLC-NLKCLELSD-TQVGSSGLRHLSGLTNLE 327
+ L L+L C + D+GL + C ++ L L TQ+ GL+H+ GL L
Sbjct: 447 ISANCGKLVELDLYRCSAVTDDGLAAVASGCKKMRMLNLCYCTQITDGGLKHVGGLEELA 506
Query: 328 SINL----SFTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLT-GLTHLDLFG 381
++ L TG+ S+ G SSL L+L + D GL AL+ + L L +
Sbjct: 507 NLELRCLVRVTGVGITSIA--VGCSSLVELDLKRCYSVDDAGLWALSRYSQNLRQLTVSY 564
Query: 382 ARITDSGAAYL 392
++T G +L
Sbjct: 565 CQVTGLGLCHL 575
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 67/237 (28%), Positives = 99/237 (41%), Gaps = 50/237 (21%)
Query: 42 PGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEH 101
P V++K ++ IA+ S L +DL+ + D+ L L CS L L C ISD GL +
Sbjct: 387 PFVSEKGLESIATLCSDLKEIDLTDCRINDAALQQLASCSELLILKLGLCSSISDEGLVY 446
Query: 102 LRG-LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 160
+ L L R +A+T G+ A A G K+ L
Sbjct: 447 ISANCGKLVELDLYRCSAVTDDGLAAVA-----------------------SGCKKMRML 483
Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQISC-SKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
N+ +C ITD +K + GL L +L++ C +VT GI + GC
Sbjct: 484 NLCYCTQITDGGLKHVGGLEELANLELRCLVRVTGVGITSIA----------VGC----- 528
Query: 220 CLDSLSALGSLFYLNLNRCQLSDD-GCEKFSKIG-SLKVLNLGFNEITDECLVHLKG 274
SL L+L RC DD G S+ +L+ L + + ++T L HL G
Sbjct: 529 --------SSLVELDLKRCYSVDDAGLWALSRYSQNLRQLTVSYCQVTGLGLCHLLG 577
>gi|171912739|ref|ZP_02928209.1| Leucine-rich repeat [Verrucomicrobium spinosum DSM 4136]
Length = 443
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 103/354 (29%), Positives = 168/354 (47%), Gaps = 41/354 (11%)
Query: 47 KWMDVIAS--------QG-SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDG 97
+W+D+ A+ +G S+L S++LS S ++++ L +L C+++
Sbjct: 87 EWLDLRATGFNNCAALEGFSALRSLNLSHS--------YVRNIEPLSALSQLQCLELCQT 138
Query: 98 GLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
+ + L L +L + + ++ A L L +L++ C+ L L GL L
Sbjct: 139 QVTDFKPLQRLGALQQLDLYSTSVSDLEPLAALHALQQLNI--CSTKVTDLEPLAGLSSL 196
Query: 158 ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPV 216
N + +++ PL+ +T L+ L+ + + D +A L+ LQKL L E
Sbjct: 197 RQFNFSFTGV---TELDPLAKITTLQQLEFRLAPIFDLDALAGLRELQKLDLSTTE---- 249
Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG-FNEITDECLVHLKGL 275
L+ LS LG+L L N +SD G + + +L+ L+L +TD + L GL
Sbjct: 250 -VRDLEPLSGLGALQKLYFNHTAVSDLG--PLAGLSALRKLDLRCARRVTD--IGPLAGL 304
Query: 276 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 335
L+ L L S + D L LT L NL+ L+LS T+V S L L+ LT L S+ L+ T
Sbjct: 305 HALQRLILASTQVTD--LTPLTELRNLQHLDLSRTKV--SDLSPLTSLTALRSLGLTSTQ 360
Query: 336 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 389
+SD L LA L+ L LD+ Q++D G A + L L + +TD G
Sbjct: 361 VSD--LAPLAAYRDLQRLFLDSTQVSDLGPVA--GMNSLQELYVSHTSVTDLGP 410
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 119/390 (30%), Positives = 178/390 (45%), Gaps = 55/390 (14%)
Query: 20 LTEVSLEAFRDCALQDLCLG-QYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLK 78
L EV LE L+ L LG Y KW + S + G+ S L HL
Sbjct: 34 LDEVPLEVAELSHLRQLSLGWNYSPSAKKW-----NPDRSFFN---PGAMSNLSELAHLP 85
Query: 79 -DCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLD 137
+ +L++ FN C + G LR L NL S S+ RN ++ + L L L+
Sbjct: 86 LEWLDLRATGFNNCAALE--GFSALRSL-NL-SHSYVRN-------IEPLSALSQLQCLE 134
Query: 138 LERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD--- 194
L C + + K L +L +L + SD++PL+ L L+ L I +KVTD
Sbjct: 135 L--C---QTQVTDFKPLQRLGALQQLDLYSTSVSDLEPLAALHALQQLNICSTKVTDLEP 189
Query: 195 --------------SGIAYLKGLQKLTLL-NLEGCPVTAACLDSLSALGSLFYLNLNRCQ 239
+G+ L L K+T L LE LD+L+ L L L+L+ +
Sbjct: 190 LAGLSSLRQFNFSFTGVTELDPLAKITTLQQLEFRLAPIFDLDALAGLRELQKLDLSTTE 249
Query: 240 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 299
+ D E S +G+L+ L ++D L L GL+ L L+L C + L GL
Sbjct: 250 VRD--LEPLSGLGALQKLYFNHTAVSD--LGPLAGLSALRKLDL-RCARRVTDIGPLAGL 304
Query: 300 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 359
L+ L L+ TQV + L L+ L NL+ ++LS T +SD L L L++L+SL L + Q
Sbjct: 305 HALQRLILASTQV--TDLTPLTELRNLQHLDLSRTKVSD--LSPLTSLTALRSLGLTSTQ 360
Query: 360 ITDTGLAALTSLTGLTHLDLFGARITDSGA 389
++D LA L + L L L +++D G
Sbjct: 361 VSD--LAPLAAYRDLQRLFLDSTQVSDLGP 388
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 96/300 (32%), Positives = 142/300 (47%), Gaps = 50/300 (16%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
+L +++ + VTD L L S+L+ +F+F G+ L L+ +T+L
Sbjct: 173 ALQQLNICSTKVTD--LEPLAGLSSLRQFNFSFT------GVTELDPLAKITTLQQLEFR 224
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
+ A AGL L KLDL T + L L GL L+ L + N SD+ PL+
Sbjct: 225 LAPIFDLDALAGLRELQKLDLS-TTEVRD-LEPLSGLGALQKL---YFNHTAVSDLGPLA 279
Query: 178 GLTNLKSLQISCS-KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
GL+ L+ L + C+ +VTD I L GL L L L VT L L+ L +L +L+L+
Sbjct: 280 GLSALRKLDLRCARRVTD--IGPLAGLHALQRLILASTQVTD--LTPLTELRNLQHLDLS 335
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
R ++SD L L LT L SL L S + D L L
Sbjct: 336 RTKVSD--------------------------LSPLTSLTALRSLGLTSTQVSD--LAPL 367
Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
+L+ L L TQV S L ++G+ +L+ + +S T ++D L LAGL+ LK L++D
Sbjct: 368 AAYRDLQRLFLDSTQV--SDLGPVAGMNSLQELYVSHTSVTD--LGPLAGLTELKRLSVD 423
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 100/207 (48%), Gaps = 18/207 (8%)
Query: 82 NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC 141
LQ LD + ++ D LE L GL L L F N + AGL L KLDL RC
Sbjct: 239 ELQKLDLS-TTEVRD--LEPLSGLGALQKLYF---NHTAVSDLGPLAGLSALRKLDL-RC 291
Query: 142 TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLK 201
R + L GL L+ L + +D+ PL+ L NL+ L +S +KV+D ++ L
Sbjct: 292 ARRVTDIGPLAGLHALQRLILASTQV---TDLTPLTELRNLQHLDLSRTKVSD--LSPLT 346
Query: 202 GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 261
L L L L V+ L L+A L L L+ Q+SD G + + SL+ L +
Sbjct: 347 SLTALRSLGLTSTQVSD--LAPLAAYRDLQRLFLDSTQVSDLG--PVAGMNSLQELYVSH 402
Query: 262 NEITDECLVHLKGLTNLESLNLDSCGI 288
+TD L L GLT L+ L++D C +
Sbjct: 403 TSVTD--LGPLAGLTELKRLSVDECAV 427
>gi|371942084|gb|AEX60854.1| internaline [Listeria monocytogenes]
Length = 790
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 115/358 (32%), Positives = 171/358 (47%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNY 424
>gi|56797877|emb|CAH04900.1| internalin A [Listeria monocytogenes]
Length = 792
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 116/358 (32%), Positives = 170/358 (47%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L SNLT L+ N
Sbjct: 90 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANSSNLTGLTLF-N 143
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 144 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 195
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 196 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 248
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 249 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 302
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 303 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 360
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 361 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNY 416
>gi|167861934|gb|ACA05666.1| InlA [Listeria monocytogenes]
gi|194326141|emb|CAQ77229.1| internalin A [Listeria monocytogenes]
Length = 538
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 115/358 (32%), Positives = 172/358 (48%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL--SFGNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNY 424
>gi|85679240|gb|ABC72036.1| InlA [Listeria monocytogenes]
Length = 794
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 106/329 (32%), Positives = 166/329 (50%), Gaps = 39/329 (11%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 97 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 150
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 151 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 202
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +K++D + L KLT NLE T + ++ LG +L L
Sbjct: 203 ANLTTLERLDISSNKLSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 255
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 256 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 309
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
L GL L LEL++ Q+ + +S L NL + L F ISD + ++ L+ L+ L
Sbjct: 310 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRL 365
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGA 382
+++D ++SL LT+++ A
Sbjct: 366 FFYNNKVSD-----VSSLANLTNINWLSA 389
>gi|290991272|ref|XP_002678259.1| predicted protein [Naegleria gruberi]
gi|284091871|gb|EFC45515.1| predicted protein [Naegleria gruberi]
Length = 434
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 95/356 (26%), Positives = 163/356 (45%), Gaps = 27/356 (7%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
++LSG++++ + + + S L L I + G+ + LS LT L+ N IT+
Sbjct: 74 LELSGNEISKNSMKFISQLSELTKLSVGLN-SIENEGINSIINLSKLTCLNIINAN-ITS 131
Query: 122 QGMKAFAGLINLVKLDLE------RCTRIHGGLVNLKGLM----KLESLNIKWC------ 165
+G+K L NL LD+ + G L NLK L+ +L L K
Sbjct: 132 EGVKLIGKLSNLTILDISGNLIGAEGGQYIGELKNLKTLVASDNELGVLGAKSIGEMNQL 191
Query: 166 -------NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
N I + K +S L+ L L + +++ D G L L+KLT NL+
Sbjct: 192 TSLCLIGNSIGNEGAKYISQLSQLTDLDLGKNEIGDEGFKLLAKLEKLT--NLDLVSNNI 249
Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 278
+ L S LG L L++ + ++ D G ++ L+ L L N IT E L + L
Sbjct: 250 SDLSSTGQLGLLNCLDVRKNKIEDKGIRNICQLSGLQSLRLCANPITSEGAKILSEMVQL 309
Query: 279 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
+L++ I DEG + L LK L++S ++ ++G++ + L+ L S+++++ I D
Sbjct: 310 TNLSISETHIDDEGAKFIAQLTTLKYLDISTKRITANGVKFICQLSKLISLDINWNNIGD 369
Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRS 394
+ ++ + L++LN I G L+ + LT LD+ RI G L +
Sbjct: 370 EGVLYISRMQQLETLNAVYCNIGLEGAKLLSEMEQLTVLDVKINRIPGEGIQLLEN 425
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 103/216 (47%)
Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
S++ S L L L ++ +++ D + + L+ LTLL L G ++ + +S L L
Sbjct: 36 SEIDKFSRLDQLTELNVNWNRLKDEDVESIGNLKNLTLLELSGNEISKNSMKFISQLSEL 95
Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
L++ + ++G + L LN+ IT E + + L+NL L++ IG
Sbjct: 96 TKLSVGLNSIENEGINSIINLSKLTCLNIINANITSEGVKLIGKLSNLTILDISGNLIGA 155
Query: 291 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 350
EG + L NLK L SD ++G G + + + L S+ L I + + ++ LS L
Sbjct: 156 EGGQYIGELKNLKTLVASDNELGVLGAKSIGEMNQLTSLCLIGNSIGNEGAKYISQLSQL 215
Query: 351 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
L+L +I D G L L LT+LDL I+D
Sbjct: 216 TDLDLGKNEIGDEGFKLLAKLEKLTNLDLVSNNISD 251
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 103/214 (48%), Gaps = 5/214 (2%)
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
+ NL L I +K+++ L G++ L +L G + D S L L LN+N
Sbjct: 1 MKNLTYLNIDWNKISEKSKIILSGMKHLKILAASGSEI-----DKFSRLDQLTELNVNWN 55
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
+L D+ E + +L +L L NEI+ + + L+ L L++ I +EG+ ++
Sbjct: 56 RLKDEDVESIGNLKNLTLLELSGNEISKNSMKFISQLSELTKLSVGLNSIENEGINSIIN 115
Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
L L CL + + + S G++ + L+NL +++S I + + L +LK+L
Sbjct: 116 LSKLTCLNIINANITSEGVKLIGKLSNLTILDISGNLIGAEGGQYIGELKNLKTLVASDN 175
Query: 359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
++ G ++ + LT L L G I + GA Y+
Sbjct: 176 ELGVLGAKSIGEMNQLTSLCLIGNSIGNEGAKYI 209
Score = 67.8 bits (164), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 68/236 (28%), Positives = 116/236 (49%), Gaps = 6/236 (2%)
Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
L LNI W N I++ LSG+ +LK L S S+ I L +LT LN+ +
Sbjct: 4 LTYLNIDW-NKISEKSKIILSGMKHLKILAASGSE-----IDKFSRLDQLTELNVNWNRL 57
Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 276
++S+ L +L L L+ ++S + + S++ L L++G N I +E + + L+
Sbjct: 58 KDEDVESIGNLKNLTLLELSGNEISKNSMKFISQLSELTKLSVGLNSIENEGINSIINLS 117
Query: 277 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 336
L LN+ + I EG+ + L NL L++S +G+ G +++ L NL+++ S +
Sbjct: 118 KLTCLNIINANITSEGVKLIGKLSNLTILDISGNLIGAEGGQYIGELKNLKTLVASDNEL 177
Query: 337 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
+ + ++ L SL L I + G ++ L+ LT LDL I D G L
Sbjct: 178 GVLGAKSIGEMNQLTSLCLIGNSIGNEGAKYISQLSQLTDLDLGKNEIGDEGFKLL 233
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 79/320 (24%), Positives = 144/320 (45%), Gaps = 27/320 (8%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
S L +++ +++T G+ + SNL LD + + ++GG +++ L NL +L N
Sbjct: 117 SKLTCLNIINANITSEGVKLIGKLSNLTILDISGNLIGAEGG-QYIGELKNLKTLVASDN 175
Query: 117 -----------------------NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
N+I +G K + L L LDL + G L
Sbjct: 176 ELGVLGAKSIGEMNQLTSLCLIGNSIGNEGAKYISQLSQLTDLDLGKNEIGDEGFKLLAK 235
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
L KL +L++ N SD+ L L L + +K+ D GI + L L L L
Sbjct: 236 LEKLTNLDLVSNNI---SDLSSTGQLGLLNCLDVRKNKIEDKGIRNICQLSGLQSLRLCA 292
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
P+T+ LS + L L+++ + D+G + +++ +LK L++ IT + +
Sbjct: 293 NPITSEGAKILSEMVQLTNLSISETHIDDEGAKFIAQLTTLKYLDISTKRITANGVKFIC 352
Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333
L+ L SL+++ IGDEG++ ++ + L+ L +G G + LS + L +++
Sbjct: 353 QLSKLISLDINWNNIGDEGVLYISRMQQLETLNAVYCNIGLEGAKLLSEMEQLTVLDVKI 412
Query: 334 TGISDGSLRKLAGLSSLKSL 353
I ++ L ++ KSL
Sbjct: 413 NRIPGEGIQLLENIARFKSL 432
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 104/228 (45%), Gaps = 5/228 (2%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
SQ S L +DL +++ D G L L +LD ISD L L L L
Sbjct: 210 SQLSQLTDLDLGKNEIGDEGFKLLAKLEKLTNLDL-VSNNISD--LSSTGQLGLLNCLDV 266
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
R+ N I +G++ L L L L G L +++L +L+I + I D
Sbjct: 267 RK-NKIEDKGIRNICQLSGLQSLRLCANPITSEGAKILSEMVQLTNLSISETH-IDDEGA 324
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
K ++ LT LK L IS ++T +G+ ++ L KL L++ + + +S + L L
Sbjct: 325 KFIAQLTTLKYLDISTKRITANGVKFICQLSKLISLDINWNNIGDEGVLYISRMQQLETL 384
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 281
N C + +G + S++ L VL++ N I E + L+ + +SL
Sbjct: 385 NAVYCNIGLEGAKLLSEMEQLTVLDVKINRIPGEGIQLLENIARFKSL 432
>gi|149173875|ref|ZP_01852504.1| hypothetical protein PM8797T_05540 [Planctomyces maris DSM 8797]
gi|148847405|gb|EDL61739.1| hypothetical protein PM8797T_05540 [Planctomyces maris DSM 8797]
Length = 525
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 98/372 (26%), Positives = 156/372 (41%), Gaps = 44/372 (11%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
+ G+ TD GL ++ L+ LD + Q++D G+ HL L L L T
Sbjct: 104 IKGNHFTDDGLRYVGQLKKLRYLDLSVNYQLTDAGMRHLESLKQLEHLDLSGCRRFTDAS 163
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK-----WCN------------ 166
K+ A L +L L L + + L L L +L+ L +K W N
Sbjct: 164 GKSLAQLTSLRTLKLRQTSLTPDVLTALSQLPELKHLAVKYSKGMWLNENTIVPLEKMPL 223
Query: 167 ------CITDSDMKPLSGLTNLKSLQISCSK-VTDSGIAYLKGLQKLTLLNL---EGCPV 216
I D ++ ++ + +LKSL + + D ++YL ++++ LN+ G
Sbjct: 224 EELEGMLIKDENLPLIAQMKSLKSLPFEQDRSIKDDQLSYLTHIRQIKKLNIVLTRGTSD 283
Query: 217 TAACLDSLSALGSLFYLNL---NRCQ---LSDDGCEKFSKIGSLKVLNLGF-NEITDECL 269
T+ + L AL L L++ N + L G +KI +LK L +G N E +
Sbjct: 284 TSQLI-QLQALPELETLSISLGNSTEGDPLDRSGLLALAKIPALKELGIGLVNVPILEAI 342
Query: 270 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 329
H + L +LN+D+ L L + LK L + V L + +LE I
Sbjct: 343 SHCTQVQKL-NLNVDTSQFQPTDLAYLKEMSRLKDLTVQIALVSDDLWATLGQVKSLEEI 401
Query: 330 NLSF--------TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 381
+ ++ S SL++L L LK L+L+ +TD GL L L L L
Sbjct: 402 SFNWGWPPQKEPPPFSMTSLKQLQNLPRLKGLDLNGFPVTDEGLGYLGQCRTLERLGLNN 461
Query: 382 ARITDSGAAYLR 393
A IT++G LR
Sbjct: 462 APITNAGLLQLR 473
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 71/259 (27%), Positives = 114/259 (44%), Gaps = 21/259 (8%)
Query: 94 ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLD--LERCTRIHGGLVNL 151
I D L + + +L SL F ++ +I + + + KL+ L R T L+ L
Sbjct: 231 IKDENLPLIAQMKSLKSLPFEQDRSIKDDQLSYLTHIRQIKKLNIVLTRGTSDTSQLIQL 290
Query: 152 KGLMKLESLNIKWCNCITDSDMKPLSGL------TNLKSLQISCSKVTD-SGIAYLKGLQ 204
+ L +LE+L+I N T+ D SGL LK L I V I++ +Q
Sbjct: 291 QALPELETLSISLGNS-TEGDPLDRSGLLALAKIPALKELGIGLVNVPILEAISHCTQVQ 349
Query: 205 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL--NLGFN 262
KL L N++ L L + L L + +SDD ++ SL+ + N G+
Sbjct: 350 KLNL-NVDTSQFQPTDLAYLKEMSRLKDLTVQIALVSDDLWATLGQVKSLEEISFNWGWP 408
Query: 263 EITDE------CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 316
+ L L+ L L+ L+L+ + DEGL L L+ L L++ + ++G
Sbjct: 409 PQKEPPPFSMTSLKQLQNLPRLKGLDLNGFPVTDEGLGYLGQCRTLERLGLNNAPITNAG 468
Query: 317 LRHLSGLTNLESINLSFTG 335
L L L+ L+ LSF G
Sbjct: 469 LLQLRHLSQLK--KLSFYG 485
Score = 39.7 bits (91), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
+DL+G VTD GL +L C L+ L N I++ GL LR LS L LSF
Sbjct: 433 LDLNGFPVTDEGLGYLGQCRTLERLGLNNA-PITNAGLLQLRHLSQLKKLSF 483
>gi|405757422|ref|YP_006686698.1| internalin A protein InlA, N-terminal part, partial [Listeria
monocytogenes SLCC2479]
gi|145687805|gb|ABP88875.1| truncated internalin A precursor [Listeria monocytogenes]
gi|145687811|gb|ABP88878.1| truncated internalin A precursor [Listeria monocytogenes]
gi|145687813|gb|ABP88879.1| truncated internalin A precursor [Listeria monocytogenes]
gi|167861890|gb|ACA05644.1| InlA [Listeria monocytogenes]
gi|167861942|gb|ACA05670.1| InlA [Listeria monocytogenes]
gi|167861986|gb|ACA05692.1| InlA [Listeria monocytogenes]
gi|194326143|emb|CAQ77230.1| internalin A [Listeria monocytogenes]
gi|298359794|gb|ADI77476.1| truncated internalin A [Listeria monocytogenes]
gi|298359982|gb|ADI77570.1| truncated internalin A [Listeria monocytogenes]
gi|298360074|gb|ADI77616.1| truncated internalin A [Listeria monocytogenes]
gi|298360136|gb|ADI77647.1| truncated internalin A [Listeria monocytogenes]
gi|298360184|gb|ADI77671.1| truncated internalin A [Listeria monocytogenes]
gi|298360286|gb|ADI77722.1| truncated internalin A [Listeria monocytogenes]
gi|298360300|gb|ADI77729.1| truncated internalin A [Listeria monocytogenes]
gi|298360306|gb|ADI77732.1| truncated internalin A [Listeria monocytogenes]
gi|298360344|gb|ADI77751.1| truncated internalin A [Listeria monocytogenes]
gi|298360352|gb|ADI77755.1| truncated internalin A [Listeria monocytogenes]
gi|298360358|gb|ADI77758.1| truncated internalin A [Listeria monocytogenes]
gi|298360602|gb|ADI77880.1| truncated internalin A [Listeria monocytogenes]
gi|298360636|gb|ADI77897.1| truncated internalin A [Listeria monocytogenes]
gi|371942098|gb|AEX60861.1| truncated internaline [Listeria monocytogenes]
gi|371942122|gb|AEX60873.1| truncated internaline [Listeria monocytogenes]
gi|404235304|emb|CBY56706.1| similar to internalin A protein InlA, N-terminal part [Listeria
monocytogenes SLCC2479]
Length = 576
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 115/358 (32%), Positives = 172/358 (48%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL--SFGNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNY 424
>gi|157118403|ref|XP_001659098.1| F-Box protein, putative [Aedes aegypti]
gi|108875753|gb|EAT39978.1| AAEL008262-PA, partial [Aedes aegypti]
Length = 381
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 91/257 (35%), Positives = 133/257 (51%), Gaps = 42/257 (16%)
Query: 152 KGLMKLESLNIKWCNCITDSDMKPL--SGLTNLKSLQIS-CSKVTDSGIAYL-KGLQKLT 207
+G+ K++ L C ITD + + + L NL++L +S C +VTDS + + + L+ +
Sbjct: 132 RGIKKVQILG---CYNITDISLGYVFSTDLLNLRTLDLSLCKQVTDSSLGRIAQHLKNVE 188
Query: 208 LLNLEGCP--VTAACLDSLSALGS--LFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF 261
+L L GC A L +A G+ L YL L CQ LSD+ ++ + SLK +NL F
Sbjct: 189 ILELGGCSNITNTAGLSKETADGTPALEYLGLQDCQRLSDEALRHIAQGLTSLKSINLSF 248
Query: 262 -NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 319
+TD L HL +T LE LNL +C I D G+ LT
Sbjct: 249 CVSVTDSGLKHLAKMTKLEELNLRACDNISDIGMAYLT---------------------- 286
Query: 320 LSGLTNLESINLSF-TGISDGSLRKLA-GLSSLKSLNLDARQITDTGLAALT-SLTGLTH 376
G + + S+++SF I+D +L ++ GL LKSL+L A QITD GLA + SL L
Sbjct: 287 -EGGSAIISLDVSFCDKIADQALTHISQGLFHLKSLSLSACQITDEGLAKIAKSLHDLET 345
Query: 377 LDLFG-ARITDSGAAYL 392
L++ AR+TD G YL
Sbjct: 346 LNIGQCARVTDKGLEYL 362
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 123/235 (52%), Gaps = 29/235 (12%)
Query: 73 GLIHLKDCSNLQSLDFNFCIQISDGGL----EHLR--------GLSNLTSLSFRRNNAIT 120
G + D NL++LD + C Q++D L +HL+ G SN+T+ + T
Sbjct: 151 GYVFSTDLLNLRTLDLSLCKQVTDSSLGRIAQHLKNVEILELGGCSNITNTAGLSKE--T 208
Query: 121 AQGMKA--FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
A G A + GL + +L E I GL +LK S+N+ +C +TDS +K L+
Sbjct: 209 ADGTPALEYLGLQDCQRLSDEALRHIAQGLTSLK------SINLSFCVSVTDSGLKHLAK 262
Query: 179 LTNLKSLQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLS-ALGSLFYLN 234
+T L+ L + +C ++D G+AYL +G + L++ C + L +S L L L+
Sbjct: 263 MTKLEELNLRACDNISDIGMAYLTEGGSAIISLDVSFCDKIADQALTHISQGLFHLKSLS 322
Query: 235 LNRCQLSDDGCEKFSK-IGSLKVLNLGF-NEITDECLVHLKG-LTNLESLNLDSC 286
L+ CQ++D+G K +K + L+ LN+G +TD+ L +L L NL +++L C
Sbjct: 323 LSACQITDEGLAKIAKSLHDLETLNIGQCARVTDKGLEYLADELNNLRAIDLYGC 377
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 85/152 (55%), Gaps = 6/152 (3%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
++D L H+ + ++L+S++ +FC+ ++D GL+HL ++ L L+ R + I+ GM
Sbjct: 226 LSDEALRHIAQGLTSLKSINLSFCVSVTDSGLKHLAKMTKLEELNLRACDNISDIGMAYL 285
Query: 128 A-GLINLVKLDLERCTRI-HGGLVNL-KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
G ++ LD+ C +I L ++ +GL L+SL++ C + K L +L++
Sbjct: 286 TEGGSAIISLDVSFCDKIADQALTHISQGLFHLKSLSLSACQITDEGLAKIAKSLHDLET 345
Query: 185 LQI-SCSKVTDSGIAYLKG-LQKLTLLNLEGC 214
L I C++VTD G+ YL L L ++L GC
Sbjct: 346 LNIGQCARVTDKGLEYLADELNNLRAIDLYGC 377
Score = 42.4 bits (98), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 66/116 (56%), Gaps = 5/116 (4%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSD-VTDSGLIHL-KDCSNLQSLDFNF 90
L++L L ++D M + GS+++S+D+S D + D L H+ + +L+SL +
Sbjct: 266 LEELNLRACDNISDIGMAYLTEGGSAIISLDVSFCDKIADQALTHISQGLFHLKSLSLSA 325
Query: 91 CIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFAG-LINLVKLDLERCTRI 144
C QI+D GL + + L +L +L+ + +T +G++ A L NL +DL CTR+
Sbjct: 326 C-QITDEGLAKIAKSLHDLETLNIGQCARVTDKGLEYLADELNNLRAIDLYGCTRL 380
>gi|371942108|gb|AEX60866.1| truncated internaline [Listeria monocytogenes]
Length = 491
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 115/358 (32%), Positives = 172/358 (48%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNT--ISDISALSGLTSLQQL--SFGNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNY 424
>gi|145687803|gb|ABP88874.1| truncated internalin A precursor [Listeria monocytogenes]
gi|145687809|gb|ABP88877.1| truncated internalin A precursor [Listeria monocytogenes]
gi|194326155|emb|CAQ77236.1| internalin A [Listeria monocytogenes]
gi|294358379|gb|ADE73842.1| truncated InlA [Listeria monocytogenes]
gi|294358381|gb|ADE73843.1| truncated InlA [Listeria monocytogenes]
gi|294358383|gb|ADE73844.1| truncated InlA [Listeria monocytogenes]
gi|294358385|gb|ADE73845.1| truncated InlA [Listeria monocytogenes]
gi|298359890|gb|ADI77524.1| truncated internalin A [Listeria monocytogenes]
gi|298359938|gb|ADI77548.1| truncated internalin A [Listeria monocytogenes]
gi|298359960|gb|ADI77559.1| truncated internalin A [Listeria monocytogenes]
gi|298360012|gb|ADI77585.1| truncated internalin A [Listeria monocytogenes]
gi|371942072|gb|AEX60848.1| truncated internaline [Listeria monocytogenes]
gi|371942094|gb|AEX60859.1| truncated internaline [Listeria monocytogenes]
gi|371942120|gb|AEX60872.1| truncated internaline [Listeria monocytogenes]
gi|371942130|gb|AEX60877.1| truncated internaline [Listeria monocytogenes]
Length = 491
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 115/358 (32%), Positives = 172/358 (48%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNT--ISDISALSGLTSLQQL--SFGNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNY 424
>gi|22347568|gb|AAM95929.1| internalin A precursor [Listeria monocytogenes]
Length = 743
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 107/333 (32%), Positives = 169/333 (50%), Gaps = 36/333 (10%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 42 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 95
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 96 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 147
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +K++D + L KLT NLE T + ++ LG +L L
Sbjct: 148 ANLTTLERLDISSNKLSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 200
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 201 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 254
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
L GL L LEL++ Q+ + +S L NL + L F ISD + ++ L+ L+ L
Sbjct: 255 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRL 310
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
+++D +++L +LT + L +I+D
Sbjct: 311 FFYNNKVSD--VSSLANLTNINWLSAGHNQISD 341
>gi|148607488|gb|ABQ95520.1| InlA [Listeria monocytogenes]
Length = 797
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 115/358 (32%), Positives = 171/358 (47%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNY 424
>gi|29423725|gb|AAO73556.1| internalin A [Listeria monocytogenes]
Length = 739
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 107/333 (32%), Positives = 169/333 (50%), Gaps = 36/333 (10%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 41 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 94
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 95 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL--SFGNQVTD--LKPL 146
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +K++D + L KLT NLE T + ++ LG +L L
Sbjct: 147 ANLTTLERLDISSNKLSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 199
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 200 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 253
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
L GL L LEL++ Q+ + +S L NL + L F ISD + ++ L+ L+ L
Sbjct: 254 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRL 309
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
+++D +++L +LT + L +I+D
Sbjct: 310 FFYNNKVSD--VSSLANLTNINWLSAGHNQISD 340
>gi|414076287|ref|YP_006995605.1| hypothetical protein ANA_C11003 [Anabaena sp. 90]
gi|413969703|gb|AFW93792.1| leucine-rich repeat-containing protein [Anabaena sp. 90]
Length = 474
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 89/254 (35%), Positives = 126/254 (49%), Gaps = 48/254 (18%)
Query: 171 SDMKPLSGLTNLKSLQISCSKVTD--------------------SGIAYLKGLQKLTLLN 210
SD+KPLS LT L SL +S +K++D S I L L KLT L+
Sbjct: 98 SDIKPLSNLTKLTSLGLSKNKISDIKSLSNLTKLTSLGLSKNKISDIKSLSNLTKLTKLD 157
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
L G ++ LS L L L+L Q+SD + S + +L LNL N+I+D +
Sbjct: 158 LVGNQISDTT--PLSNLTKLTSLDLWGNQISD--IKPLSNLTNLTFLNLVGNKISD--IK 211
Query: 271 HLKGLTNLESLNLDSCGIGD-EGLVNLTGLCNLKCL--ELSDTQVGS------------- 314
L LT L SL L I D + L N T L L + ++SDT S
Sbjct: 212 PLSNLTKLTSLGLSKNKISDIKSLSNFTNLTKLDLVGNQISDTTPLSNLTKLTSLDLWGN 271
Query: 315 --SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 372
S ++ LS LTNL + L IS+ ++ L+ L++L SL L QI+D + L++LT
Sbjct: 272 QISDIKPLSNLTNLTFLILWGNQISN--IKPLSNLTNLTSLTLSLNQISD--IKPLSNLT 327
Query: 373 GLTHLDLFGARITD 386
LT+LDL+G +I+D
Sbjct: 328 NLTYLDLWGNKISD 341
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 119/334 (35%), Positives = 172/334 (51%), Gaps = 33/334 (9%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI--QISDGGLEHLRGLSNLTSL 111
S + L S+DL G+ ++D +K SNL +L F + +ISD ++ L L+ LTSL
Sbjct: 170 SNLTKLTSLDLWGNQISD-----IKPLSNLTNLTFLNLVGNKISD--IKPLSNLTKLTSL 222
Query: 112 SFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDS 171
+N +K+ + NL KLDL L L KL SL++ W N I S
Sbjct: 223 GLSKNK---ISDIKSLSNFTNLTKLDL--VGNQISDTTPLSNLTKLTSLDL-WGNQI--S 274
Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
D+KPLS LTNL L + +++ S I L L LT L L ++ + LS L +L
Sbjct: 275 DIKPLSNLTNLTFLILWGNQI--SNIKPLSNLTNLTSLTLSLNQISD--IKPLSNLTNLT 330
Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
YL+L ++SD + S + +L L L N+I+D + L LTNL L L I D
Sbjct: 331 YLDLWGNKISD--IKPLSNLTNLTYLYLLSNKISD--IKPLSNLTNLTLLFLSLNQISD- 385
Query: 292 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 351
+ L+ L NL L LS Q+ S ++ LS LTNL S+ LS ISD ++ L+ L++L
Sbjct: 386 -IKPLSSLTNLTFLILSKNQI--SDIKPLSNLTNLTSLGLSENKISD--IKPLSNLTNLT 440
Query: 352 SLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
L+L I+D + L++LT LT L L+ T
Sbjct: 441 YLSLWENPISD--IKPLSNLTNLTELYLWENPFT 472
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 71/211 (33%), Positives = 104/211 (49%), Gaps = 38/211 (18%)
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
LTNL SL +S +K++D I L L KLT L L ++ + SLS L L L L++
Sbjct: 84 LTNLTSLGLSENKISD--IKPLSNLTKLTSLGLSKNKISD--IKSLSNLTKLTSLGLSKN 139
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
++SD + S + L L+L N+I+D L LT L SL+L I D
Sbjct: 140 KISD--IKSLSNLTKLTKLDLVGNQISDTT--PLSNLTKLTSLDLWGNQISD-------- 187
Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
++ LS LTNL +NL ISD ++ L+ L+ L SL L
Sbjct: 188 ------------------IKPLSNLTNLTFLNLVGNKISD--IKPLSNLTKLTSLGLSKN 227
Query: 359 QITDTGLAALTSLTGLTHLDLFGARITDSGA 389
+I+D + +L++ T LT LDL G +I+D+
Sbjct: 228 KISD--IKSLSNFTNLTKLDLVGNQISDTTP 256
>gi|334119190|ref|ZP_08493277.1| leucine-rich repeat-containing protein [Microcoleus vaginatus
FGP-2]
gi|333458661|gb|EGK87278.1| leucine-rich repeat-containing protein [Microcoleus vaginatus
FGP-2]
Length = 489
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 99/312 (31%), Positives = 148/312 (47%), Gaps = 47/312 (15%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS--FRRNNAITAQGMKAFAGLINLV 134
+ D L+SL + +SD + ++ L +LT+L+ + NN I + +K L NL
Sbjct: 98 INDIKPLESLTNLTGLVLSDNQINDIKPLESLTNLTKLYLGNNKI--KDIKPLQSLTNLT 155
Query: 135 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 194
+L L TRI SD+KPL LTNL L +S +K D
Sbjct: 156 QLGLHN-TRI--------------------------SDIKPLQSLTNLTKLDLSNNKTLD 188
Query: 195 SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL 254
I L+ L LT L L+ + + L +L +L +L L Q+ D + + +L
Sbjct: 189 --IKPLQSLTNLTKLYLDNNKIKD--IKPLESLTNLTHLQLMSNQIKD--IKPLESLTNL 242
Query: 255 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 314
L+L N+I+D + L+ LT L L LD+ I D + L L NL ++L ++
Sbjct: 243 TSLHLYNNQISD--IKPLESLTKLTWLWLDNNKISD--IKPLKSLTNLTEIKLGSNKI-- 296
Query: 315 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 374
S ++ L LTNL S+ L ISD ++ L L+ L SL L QI+D + L SLT L
Sbjct: 297 SDIKPLESLTNLTSLYLHNNQISD--IKPLESLTKLTSLWLINNQISD--IKPLESLTNL 352
Query: 375 THLDLFGARITD 386
T + L RI+D
Sbjct: 353 TGIVLSNNRISD 364
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 78/234 (33%), Positives = 118/234 (50%), Gaps = 16/234 (6%)
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
KL S+ + N +D+KPL LTNL L +S +++ D I L+ L LT L L
Sbjct: 81 AYQKLSSIEELYLNDKKINDIKPLESLTNLTGLVLSDNQIND--IKPLESLTNLTKLYLG 138
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
+ + L +L +L L L+ ++SD + + +L L+L N+ D + L
Sbjct: 139 NNKIKD--IKPLQSLTNLTQLGLHNTRISD--IKPLQSLTNLTKLDLSNNKTLD--IKPL 192
Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 332
+ LTNL L LD+ I D + L L NL L+L Q+ ++ L LTNL S++L
Sbjct: 193 QSLTNLTKLYLDNNKIKD--IKPLESLTNLTHLQLMSNQIK--DIKPLESLTNLTSLHLY 248
Query: 333 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
ISD ++ L L+ L L LD +I+D + L SLT LT + L +I+D
Sbjct: 249 NNQISD--IKPLESLTKLTWLWLDNNKISD--IKPLKSLTNLTEIKLGSNKISD 298
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 90/327 (27%), Positives = 146/327 (44%), Gaps = 63/327 (19%)
Query: 79 DCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL 138
D LQSL + + + ++ ++ L +LT+L+ + + + +K L NL L L
Sbjct: 188 DIKPLQSLTNLTKLYLDNNKIKDIKPLESLTNLTHLQLMSNQIKDIKPLESLTNLTSLHL 247
Query: 139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIA 198
+ + ++K L L L W + SD+KPL LTNL +++ +K++D
Sbjct: 248 -----YNNQISDIKPLESLTKLTWLWLDNNKISDIKPLKSLTNLTEIKLGSNKISD---- 298
Query: 199 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD-DGCEKFSKIGSLKVL 257
L+SL+ L SL+ L+ Q+SD E +K+ SL ++
Sbjct: 299 -------------------IKPLESLTNLTSLY---LHNNQISDIKPLESLTKLTSLWLI 336
Query: 258 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 317
N N+I+D + L+ LTNL + L + I D + L L L L L++ Q+ S +
Sbjct: 337 N---NQISD--IKPLESLTNLTGIVLSNNRISD--IKPLESLNKLTLLALTNNQI--SDI 387
Query: 318 RHLSGLTNLESINLSFTGISD--------------------GSLRKLAGLSSLKSLNLDA 357
+ L LTNL I L I D ++ L L++L L+L+
Sbjct: 388 KPLESLTNLTGIVLMSNQIQDIKPLQSLTNLTLLALTNNKISDIKPLQSLTNLTLLSLEK 447
Query: 358 RQITDTGLAALTSLTGLTHLDLFGARI 384
QI+D + L SLT LT + L G I
Sbjct: 448 NQISD--IKPLESLTNLTEIRLSGNPI 472
>gi|290973418|ref|XP_002669445.1| predicted protein [Naegleria gruberi]
gi|284082993|gb|EFC36701.1| predicted protein [Naegleria gruberi]
Length = 280
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 115/239 (48%), Gaps = 1/239 (0%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
+ +L LNI N I D +S + L L I ++++D G + +++LT L++ G
Sbjct: 25 MKQLTLLNI-GTNEIGDEGAIMISEMKQLTFLDIGGNQISDEGARSISKMRQLTFLDIYG 83
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
+ S+S + L LN+ Q+ D+G + S++ L L++ NEI E +
Sbjct: 84 NGIGDKGAKSISEMQQLTLLNIGGNQIGDEGAKLISQMKQLTFLDIYCNEIDVEGAKCIS 143
Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333
+ L SLN+ S IG EG+ L+ + L L + + +G G + +S + L +++
Sbjct: 144 EMQQLTSLNIGSNEIGVEGVKFLSEMQQLTSLNIGENLIGDEGAKLISQMKQLTFLDIYC 203
Query: 334 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
I + ++ + L SLN+ I D G ++ + LT LD++ I GA Y+
Sbjct: 204 NEIGVEGAKSISEMQQLTSLNIGENGIGDEGAKLISEMKQLTFLDIYCNEIGVEGAKYI 262
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/268 (25%), Positives = 129/268 (48%), Gaps = 1/268 (0%)
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N I +G K + + L L++ G + + + +L L+I N I+D + +
Sbjct: 12 NQIGVEGAKLISEMKQLTLLNIGTNEIGDEGAIMISEMKQLTFLDI-GGNQISDEGARSI 70
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
S + L L I + + D G + +Q+LTLLN+ G + +S + L +L++
Sbjct: 71 SKMRQLTFLDIYGNGIGDKGAKSISEMQQLTLLNIGGNQIGDEGAKLISQMKQLTFLDIY 130
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
++ +G + S++ L LN+G NEI E + L + L SLN+ IGDEG +
Sbjct: 131 CNEIDVEGAKCISEMQQLTSLNIGSNEIGVEGVKFLSEMQQLTSLNIGENLIGDEGAKLI 190
Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
+ + L L++ ++G G + +S + L S+N+ GI D + ++ + L L++
Sbjct: 191 SQMKQLTFLDIYCNEIGVEGAKSISEMQQLTSLNIGENGIGDEGAKLISEMKQLTFLDIY 250
Query: 357 ARQITDTGLAALTSLTGLTHLDLFGARI 384
+I G ++ + LT L++ +I
Sbjct: 251 CNEIGVEGAKYISEMKQLTSLNISNNQI 278
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 69/137 (50%)
Query: 253 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 312
L +L++G+N+I E + + L LN+ + IGDEG + ++ + L L++ Q+
Sbjct: 3 QLTLLDIGYNQIGVEGAKLISEMKQLTLLNIGTNEIGDEGAIMISEMKQLTFLDIGGNQI 62
Query: 313 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 372
G R +S + L +++ GI D + ++ + L LN+ QI D G ++ +
Sbjct: 63 SDEGARSISKMRQLTFLDIYGNGIGDKGAKSISEMQQLTLLNIGGNQIGDEGAKLISQMK 122
Query: 373 GLTHLDLFGARITDSGA 389
LT LD++ I GA
Sbjct: 123 QLTFLDIYCNEIDVEGA 139
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 111/240 (46%), Gaps = 5/240 (2%)
Query: 51 VIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTS 110
++ S+ L +D+ G+ ++D G + L LD + I D G + + + LT
Sbjct: 44 IMISEMKQLTFLDIGGNQISDEGARSISKMRQLTFLDI-YGNGIGDKGAKSISEMQQLTL 102
Query: 111 LSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH-GGLVNLKGLMKLESLNIKWCNCIT 169
L+ N I +G K + + L LD+ C I G + + +L SLNI N I
Sbjct: 103 LNIG-GNQIGDEGAKLISQMKQLTFLDI-YCNEIDVEGAKCISEMQQLTSLNI-GSNEIG 159
Query: 170 DSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 229
+K LS + L SL I + + D G + +++LT L++ + S+S +
Sbjct: 160 VEGVKFLSEMQQLTSLNIGENLIGDEGAKLISQMKQLTFLDIYCNEIGVEGAKSISEMQQ 219
Query: 230 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 289
L LN+ + D+G + S++ L L++ NEI E ++ + L SLN+ + IG
Sbjct: 220 LTSLNIGENGIGDEGAKLISEMKQLTFLDIYCNEIGVEGAKYISEMKQLTSLNISNNQIG 279
>gi|371942132|gb|AEX60878.1| internaline [Listeria monocytogenes]
Length = 790
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 115/358 (32%), Positives = 171/358 (47%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGDNQISD--LTPLANLTRITQLGLNDQEWTNPPVNY 424
>gi|156377140|ref|XP_001630715.1| predicted protein [Nematostella vectensis]
gi|156217741|gb|EDO38652.1| predicted protein [Nematostella vectensis]
Length = 398
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 98/308 (31%), Positives = 158/308 (51%), Gaps = 33/308 (10%)
Query: 81 SNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLI-NLVKLD 137
S ++SL+ C ++D + H ++ L LT L IT + A + NL LD
Sbjct: 94 SCIESLNLKGCYNVTDTSIGHAFVKYLPTLTVLDLSLCKQITDSSLGKIADFLKNLEFLD 153
Query: 138 LERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT---------NLKSLQ 186
L C I G L+ GL+KL+ LN++ C I+D+ + LSGL+ NL +L
Sbjct: 154 LAGCCNITNTGLLLCSWGLVKLKHLNLRSCRHISDAGILHLSGLSNNINAHGNKNLTTLC 213
Query: 187 IS-CSKVTDSGIAYL-KGLQKLTLLNLE-GCPVTAACLDSLSALGSLFYLNLNRCQ-LSD 242
+ C K+TD+ + ++ KGL L LNL C ++ A L L+ L SL LNL C+ +++
Sbjct: 214 LQDCQKITDNALRHISKGLINLECLNLSFCCGISGAGLAHLATLRSLRELNLRSCEGVNN 273
Query: 243 DGCEKFSKIG-SLKVLNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGLVNLT-- 297
+G + G +L L++ F ++I D L H+ GL +L++L L+S I DEGL ++
Sbjct: 274 EGIAHLAVGGLNLVCLDVSFCDKIGDVALNHISSGLNHLQNLGLNSSHITDEGLCKISRH 333
Query: 298 ----GLCNL-KCLELSDTQVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLK 351
+ N+ +C +++D + S S L + +I+L T ++ L KL L L+
Sbjct: 334 LRELRVLNIGQCTQITDQSIASIA----SNLICITNIDLYGCTKVTKCGLEKLMHLPKLR 389
Query: 352 SLNLDARQ 359
LNL Q
Sbjct: 390 VLNLGLWQ 397
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 81/236 (34%), Positives = 122/236 (51%), Gaps = 23/236 (9%)
Query: 157 LESLNIKWCNCITDSDMKP--LSGLTNLKSLQIS-CSKVTDSGIAYLKG-LQKLTLLNLE 212
+ESLN+K C +TD+ + + L L L +S C ++TDS + + L+ L L+L
Sbjct: 96 IESLNLKGCYNVTDTSIGHAFVKYLPTLTVLDLSLCKQITDSSLGKIADFLKNLEFLDLA 155
Query: 213 GC--PVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKI-------GSLKVLNLGFN 262
GC L L L +LNL C+ +SD G S + G+ + L
Sbjct: 156 GCCNITNTGLLLCSWGLVKLKHLNLRSCRHISDAGILHLSGLSNNINAHGNKNLTTLCLQ 215
Query: 263 E---ITDECLVHL-KGLTNLESLNLD-SCGIGDEGLVNLTGLCNLKCLELSDTQ-VGSSG 316
+ ITD L H+ KGL NLE LNL CGI GL +L L +L+ L L + V + G
Sbjct: 216 DCQKITDNALRHISKGLINLECLNLSFCCGISGAGLAHLATLRSLRELNLRSCEGVNNEG 275
Query: 317 LRHLS-GLTNLESINLSFT-GISDGSLRKLA-GLSSLKSLNLDARQITDTGLAALT 369
+ HL+ G NL +++SF I D +L ++ GL+ L++L L++ ITD GL ++
Sbjct: 276 IAHLAVGGLNLVCLDVSFCDKIGDVALNHISSGLNHLQNLGLNSSHITDEGLCKIS 331
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 91/175 (52%), Gaps = 9/175 (5%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD+ L H+ K NL+ L+ +FC IS GL HL L +L L+ R + +G+
Sbjct: 220 ITDNALRHISKGLINLECLNLSFCCGISGAGLAHLATLRSLRELNLRSCEGVNNEGIAHL 279
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLS-GLTNLK 183
A G +NLV LD+ C +I +N GL L++L + + ITD + +S L L+
Sbjct: 280 AVGGLNLVCLDVSFCDKIGDVALNHISSGLNHLQNLGLNSSH-ITDEGLCKISRHLRELR 338
Query: 184 SLQI-SCSKVTDSGIAYLKG-LQKLTLLNLEGCPVTAAC-LDSLSALGSLFYLNL 235
L I C+++TD IA + L +T ++L GC C L+ L L L LNL
Sbjct: 339 VLNIGQCTQITDQSIASIASNLICITNIDLYGCTKVTKCGLEKLMHLPKLRVLNL 393
Score = 38.9 bits (89), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 72/136 (52%), Gaps = 6/136 (4%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSD-VTDSGLIHLKD-CSNLQSLDFN 89
+L++L L GVN++ + +A G +L+ +D+S D + D L H+ ++LQ+L N
Sbjct: 259 SLRELNLRSCEGVNNEGIAHLAVGGLNLVCLDVSFCDKIGDVALNHISSGLNHLQNLGLN 318
Query: 90 FCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFAG-LINLVKLDLERCTRIHG- 146
I+D GL + R L L L+ + IT Q + + A LI + +DL CT++
Sbjct: 319 SS-HITDEGLCKISRHLRELRVLNIGQCTQITDQSIASIASNLICITNIDLYGCTKVTKC 377
Query: 147 GLVNLKGLMKLESLNI 162
GL L L KL LN+
Sbjct: 378 GLEKLMHLPKLRVLNL 393
>gi|219821381|gb|ACL37832.1| internalin A [Listeria monocytogenes]
gi|219821384|gb|ACL37834.1| internalin A [Listeria monocytogenes]
Length = 741
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 106/329 (32%), Positives = 166/329 (50%), Gaps = 39/329 (11%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL--SFGNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +K++D + L KLT NLE T + ++ LG +L L
Sbjct: 146 ANLTTLERLDISSNKLSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 252
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
L GL L LEL++ Q+ + +S L NL + L F ISD + ++ L+ L+ L
Sbjct: 253 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRL 308
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGA 382
+++D ++SL LT+++ A
Sbjct: 309 FFYNNKVSD-----VSSLANLTNINWLSA 332
>gi|148607496|gb|ABQ95524.1| InlA [Listeria monocytogenes]
Length = 730
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 115/358 (32%), Positives = 171/358 (47%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL--SFGNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNY 424
>gi|27574254|pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
gi|27574256|pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
gi|27574257|pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
gi|27574258|pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 115/358 (32%), Positives = 172/358 (48%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 68 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 121
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 122 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL--SFGNQVTD--LKPL 173
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 174 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 226
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 227 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 280
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 281 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 338
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 339 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNY 394
>gi|313485040|gb|ADR52996.1| InlA [Listeria monocytogenes]
Length = 491
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 115/358 (32%), Positives = 172/358 (48%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNT--ISDISALSGLTSLQQL--SFGNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNY 424
>gi|298360550|gb|ADI77854.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 115/358 (32%), Positives = 171/358 (47%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNY 424
>gi|223698952|gb|ACN19208.1| internalin A [Listeria monocytogenes]
Length = 715
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 116/358 (32%), Positives = 172/358 (48%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 13 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 66
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 67 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQL--FFGNQVTD--LKPL 118
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 119 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 171
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 172 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 225
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 226 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 283
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 284 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNY 339
>gi|158429248|pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 115/358 (32%), Positives = 172/358 (48%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 67 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 120
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 121 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL--SFGNQVTD--LKPL 172
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 173 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 225
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 226 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 279
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 280 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 337
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 338 ANNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNY 393
>gi|112961793|gb|ABI28548.1| internalin A [Listeria monocytogenes]
Length = 696
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 116/351 (33%), Positives = 166/351 (47%), Gaps = 54/351 (15%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
S + +TD + LKD + L + N QI+D + L LSNLT L+ NN IT
Sbjct: 1 FSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-NNQIT--D 52
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
+ L NL +L+L T + L GL L+ L+ N +TD +KPL+ LT L+
Sbjct: 53 IDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPLANLTTLE 106
Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNLNRCQL 240
L IS +KV+D + L KLT NLE T + ++ LG +L L+LN QL
Sbjct: 107 RLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSLNGNQL 159
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
D G + + +L L+L N+I++ L L GLT L L L + I + + L GL
Sbjct: 160 KDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLT 213
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------------- 343
L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 214 ALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSD 271
Query: 344 ---LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 272 VSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNY 320
>gi|371942144|gb|AEX60884.1| truncated internaline [Listeria monocytogenes]
Length = 491
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 115/358 (32%), Positives = 172/358 (48%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNT--ISDISALSGLTSLQQL--SFGNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNY 424
>gi|298360020|gb|ADI77589.1| truncated internalin A [Listeria monocytogenes]
gi|298360528|gb|ADI77843.1| truncated internalin A [Listeria monocytogenes]
Length = 459
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 115/358 (32%), Positives = 172/358 (48%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNT--ISDISALSGLTSLQQL--SFGNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNY 424
>gi|298359722|gb|ADI77440.1| truncated internalin A [Listeria monocytogenes]
gi|298359752|gb|ADI77455.1| truncated internalin A [Listeria monocytogenes]
gi|298359762|gb|ADI77460.1| truncated internalin A [Listeria monocytogenes]
gi|298359812|gb|ADI77485.1| truncated internalin A [Listeria monocytogenes]
gi|298359814|gb|ADI77486.1| truncated internalin A [Listeria monocytogenes]
gi|298359858|gb|ADI77508.1| truncated internalin A [Listeria monocytogenes]
gi|298359886|gb|ADI77522.1| truncated internalin A [Listeria monocytogenes]
gi|298359900|gb|ADI77529.1| truncated internalin A [Listeria monocytogenes]
gi|298359906|gb|ADI77532.1| truncated internalin A [Listeria monocytogenes]
gi|298359912|gb|ADI77535.1| truncated internalin A [Listeria monocytogenes]
gi|298359944|gb|ADI77551.1| truncated internalin A [Listeria monocytogenes]
gi|298359980|gb|ADI77569.1| truncated internalin A [Listeria monocytogenes]
gi|298359990|gb|ADI77574.1| truncated internalin A [Listeria monocytogenes]
gi|298359992|gb|ADI77575.1| truncated internalin A [Listeria monocytogenes]
gi|298359994|gb|ADI77576.1| truncated internalin A [Listeria monocytogenes]
gi|298360008|gb|ADI77583.1| truncated internalin A [Listeria monocytogenes]
gi|298360026|gb|ADI77592.1| truncated internalin A [Listeria monocytogenes]
gi|298360060|gb|ADI77609.1| truncated internalin A [Listeria monocytogenes]
gi|298360078|gb|ADI77618.1| truncated internalin A [Listeria monocytogenes]
gi|298360082|gb|ADI77620.1| truncated internalin A [Listeria monocytogenes]
gi|298360096|gb|ADI77627.1| truncated internalin A [Listeria monocytogenes]
gi|298360142|gb|ADI77650.1| truncated internalin A [Listeria monocytogenes]
gi|298360144|gb|ADI77651.1| truncated internalin A [Listeria monocytogenes]
gi|298360146|gb|ADI77652.1| truncated internalin A [Listeria monocytogenes]
gi|298360160|gb|ADI77659.1| truncated internalin A [Listeria monocytogenes]
gi|298360192|gb|ADI77675.1| truncated internalin A [Listeria monocytogenes]
gi|298360252|gb|ADI77705.1| truncated internalin A [Listeria monocytogenes]
gi|298360274|gb|ADI77716.1| truncated internalin A [Listeria monocytogenes]
gi|298360276|gb|ADI77717.1| truncated internalin A [Listeria monocytogenes]
gi|298360296|gb|ADI77727.1| truncated internalin A [Listeria monocytogenes]
gi|298360304|gb|ADI77731.1| truncated internalin A [Listeria monocytogenes]
gi|298360316|gb|ADI77737.1| truncated internalin A [Listeria monocytogenes]
gi|298360320|gb|ADI77739.1| truncated internalin A [Listeria monocytogenes]
gi|298360336|gb|ADI77747.1| truncated internalin A [Listeria monocytogenes]
gi|298360342|gb|ADI77750.1| truncated internalin A [Listeria monocytogenes]
gi|298360348|gb|ADI77753.1| truncated internalin A [Listeria monocytogenes]
gi|298360374|gb|ADI77766.1| truncated internalin A [Listeria monocytogenes]
gi|298360380|gb|ADI77769.1| truncated internalin A [Listeria monocytogenes]
gi|298360404|gb|ADI77781.1| truncated internalin A [Listeria monocytogenes]
gi|298360414|gb|ADI77786.1| truncated internalin A [Listeria monocytogenes]
gi|298360426|gb|ADI77792.1| truncated internalin A [Listeria monocytogenes]
gi|298360458|gb|ADI77808.1| truncated internalin A [Listeria monocytogenes]
gi|298360464|gb|ADI77811.1| truncated internalin A [Listeria monocytogenes]
gi|298360488|gb|ADI77823.1| truncated internalin A [Listeria monocytogenes]
gi|298360492|gb|ADI77825.1| truncated internalin A [Listeria monocytogenes]
gi|298360518|gb|ADI77838.1| truncated internalin A [Listeria monocytogenes]
gi|298360538|gb|ADI77848.1| truncated internalin A [Listeria monocytogenes]
gi|298360562|gb|ADI77860.1| truncated internalin A [Listeria monocytogenes]
gi|298360594|gb|ADI77876.1| truncated internalin A [Listeria monocytogenes]
gi|298360616|gb|ADI77887.1| truncated internalin A [Listeria monocytogenes]
gi|298360654|gb|ADI77906.1| truncated internalin A [Listeria monocytogenes]
gi|298360660|gb|ADI77909.1| truncated internalin A [Listeria monocytogenes]
gi|298360668|gb|ADI77913.1| truncated internalin A [Listeria monocytogenes]
gi|298360690|gb|ADI77924.1| truncated internalin A [Listeria monocytogenes]
gi|298360696|gb|ADI77927.1| truncated internalin A [Listeria monocytogenes]
gi|298360720|gb|ADI77939.1| truncated internalin A [Listeria monocytogenes]
gi|443428784|gb|AGC92191.1| truncated internalin A [Listeria monocytogenes]
gi|443428786|gb|AGC92192.1| truncated internalin A [Listeria monocytogenes]
gi|443428790|gb|AGC92194.1| truncated internalin A [Listeria monocytogenes]
gi|443428794|gb|AGC92196.1| truncated internalin A [Listeria monocytogenes]
gi|443428808|gb|AGC92203.1| truncated internalin A [Listeria monocytogenes]
gi|443428810|gb|AGC92204.1| truncated internalin A [Listeria monocytogenes]
gi|443428828|gb|AGC92213.1| truncated internalin A [Listeria monocytogenes]
gi|443428866|gb|AGC92232.1| truncated internalin A [Listeria monocytogenes]
gi|443428874|gb|AGC92236.1| truncated internalin A [Listeria monocytogenes]
gi|443428876|gb|AGC92237.1| truncated internalin A [Listeria monocytogenes]
Length = 699
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 115/358 (32%), Positives = 172/358 (48%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNY 424
>gi|167861956|gb|ACA05677.1| InlA [Listeria monocytogenes]
Length = 800
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 105/327 (32%), Positives = 165/327 (50%), Gaps = 35/327 (10%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
+ LT L+ L IS +KV+D S +A L L+ L N + +T L L +L L+L
Sbjct: 204 ANLTTLERLDISSNKVSDISVLARLPTLESLIATNNQISDITP-----LGILTNLDELSL 258
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
N QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 259 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISP 312
Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355
L GL L LEL++ Q+ + +S L NL + L F ISD + ++ L+ L+ L
Sbjct: 313 LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRLFF 368
Query: 356 DARQITDTGLAALTSLTGLTHLDLFGA 382
+++D ++SL LT+++ A
Sbjct: 369 YNNKVSD-----VSSLANLTNINWLSA 390
>gi|167861930|gb|ACA05664.1| InlA [Listeria monocytogenes]
gi|167862036|gb|ACA05717.1| InlA [Listeria monocytogenes]
gi|194239408|emb|CAQ76844.1| internalin A [Listeria monocytogenes]
gi|222543296|gb|ACM66668.1| internalin A [Listeria monocytogenes]
gi|298359976|gb|ADI77567.1| internalin A [Listeria monocytogenes]
gi|298360582|gb|ADI77870.1| internalin A [Listeria monocytogenes]
gi|298360712|gb|ADI77935.1| internalin A [Listeria monocytogenes]
gi|298360716|gb|ADI77937.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 116/358 (32%), Positives = 172/358 (48%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQL--FFGNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNY 424
>gi|371942138|gb|AEX60881.1| internaline [Listeria monocytogenes]
Length = 789
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 115/358 (32%), Positives = 172/358 (48%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNAPVNY 424
>gi|291239173|ref|XP_002739507.1| PREDICTED: F-box and leucine-rich repeat protein 20-like
[Saccoglossus kowalevskii]
Length = 794
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 110/419 (26%), Positives = 191/419 (45%), Gaps = 68/419 (16%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHL-KDCSNLQSLDFNFC 91
LQDL + + GVND M IA S LL +++S +++ D+ L L + C+NLQ L +C
Sbjct: 319 LQDLNISECSGVNDDMMKDIAEGCSILLYLNISHTNIADASLRVLSRCCANLQYLSLAYC 378
Query: 92 IQISDGGLEHL---RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGL 148
+ SD GL++L RG L L IT +G + + E C+ I
Sbjct: 379 KRFSDKGLQYLSHSRGCRKLIYLDLSGCTQITQEGYRNMS----------EGCSNIQSIF 428
Query: 149 VNLKGLMKLESLNIKWCNC-------------ITDSDMKPLSGLTNLKSLQIS-CSKVTD 194
+N +K E L+ C ++DS +K L+ L+ +++ ++++D
Sbjct: 429 LNDNNTLKDECLSAVTSKCHNIRSMSLLGTPHLSDSAIKTLALNRRLQKIRMEGNNRISD 488
Query: 195 SGIAYL-KGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDDG------- 244
GI +L K L + L CP +T L SLS ++ LN+ C ++SD G
Sbjct: 489 LGIKHLAKYCHDLRHVYLSDCPRLTDTALKSLSNCRNVSVLNIADCVRISDSGVRQMVEG 548
Query: 245 -------------CEKFSKIGSLKVL----NLGF------NEITDECLVHLKGLTNLESL 281
C + S + L+++ NL + ITD + L + +L S+
Sbjct: 549 PSGPKIRELNLTNCVRVSDVSILRIMQKCHNLSYASFCFCEHITDAGVELLGSMPSLMSV 608
Query: 282 NLDSCGIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLS-GLTNLESINLSF-TGISD 338
++ C + D GL +L L + +++ Q+ G++ + +LE +++S + ++D
Sbjct: 609 DISGCNVTDSGLASLGNNPRLLDVTIAECYQITDLGIQKFAQQCRDLERLDVSHCSSLTD 668
Query: 339 GSLRKLAG-LSSLKSLNLDARQ-ITDTGLAALTSLTGLTH-LDLFG-ARITDSGAAYLR 393
+++ LA L LNL Q +TD + L+ + H LD+ G ++D YLR
Sbjct: 669 SAIKNLAFCCRRLVVLNLTGCQLLTDLSIQYLSGVCHYLHSLDISGCVHVSDKSLRYLR 727
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 78/163 (47%), Gaps = 29/163 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
SL+SVD+SG +VTDSGL L + L + C QI+D G++
Sbjct: 603 PSLMSVDISGCNVTDSGLASLGNNPRLLDVTIAECYQITDLGIQKF-------------- 648
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGL--MKLESLNIKWCNCITDSDMK 174
AQ + +L +LD+ C+ + + +L LN+ C +TD ++
Sbjct: 649 ----AQQCR------DLERLDVSHCSSLTDSAIKNLAFCCRRLVVLNLTGCQLLTDLSIQ 698
Query: 175 PLSGLTN-LKSLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGC 214
LSG+ + L SL IS C V+D + YL KG +++ +L + C
Sbjct: 699 YLSGVCHYLHSLDISGCVHVSDKSLRYLRKGCKRIKVLVMLYC 741
>gi|167862030|gb|ACA05714.1| InlA [Listeria monocytogenes]
Length = 576
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 115/358 (32%), Positives = 172/358 (48%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 152 NHIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL--SFGNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNY 424
>gi|441473145|emb|CCQ22899.1| Internalin-A [Listeria monocytogenes N53-1]
Length = 455
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 115/358 (32%), Positives = 172/358 (48%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNT--ISDISALSGLTSLQQL--SFGNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNY 424
>gi|313485081|gb|ADR53011.1| InlA [Listeria monocytogenes]
Length = 800
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 116/358 (32%), Positives = 172/358 (48%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQL--FFGNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNY 424
>gi|290997259|ref|XP_002681199.1| predicted protein [Naegleria gruberi]
gi|284094822|gb|EFC48455.1| predicted protein [Naegleria gruberi]
Length = 449
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 70/236 (29%), Positives = 111/236 (47%), Gaps = 19/236 (8%)
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
K +S + L L I CSK + I + L LT LN C +++ L L L L L
Sbjct: 155 KSISTFSQLTKLNIQCSKNINMIITSVGSLSNLTYLNASQCNISSVNLKFLQ-LFKLTKL 213
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+L++ + DG + + + +LK LNL IT++C+ HL LT L LN+ IG+EGL
Sbjct: 214 DLSKNNIGGDGMKVIALLTNLKYLNLQDCNITNDCITHLTSLTKLVHLNVGDNYIGNEGL 273
Query: 294 VNLTGLCNLKCLELSD-----------------TQVGSSGLRHLSGLTNLESINLSFTGI 336
++ L NL L + ++ G+ HL+ L NL ++ S I
Sbjct: 274 FLISSLRNLTYLSVERGTGRRFNERQVDIANQGMEINHQGIAHLTNLHNLRHLDFSGKPI 333
Query: 337 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
D + + L+S++ LN+ +R + +L L +L++ G I D GA L
Sbjct: 334 CDKGIEFIGKLNSIEILNV-SRCNCSGDIESLQKSPHLINLNIVGNPIGDKGAEIL 388
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 78/240 (32%), Positives = 110/240 (45%), Gaps = 24/240 (10%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
SNL L+ + C IS L+ L+ L LT L +NN I GMK A L NL L+L+
Sbjct: 185 SNLTYLNASQC-NISSVNLKFLQ-LFKLTKLDLSKNN-IGGDGMKVIALLTNLKYLNLQD 241
Query: 141 CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS---------- 190
C + + +L L KL LN+ N I + + +S L NL L +
Sbjct: 242 CNITNDCITHLTSLTKLVHLNV-GDNYIGNEGLFLISSLRNLTYLSVERGTGRRFNERQV 300
Query: 191 -------KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
++ GIA+L L L L+ G P+ ++ + L S+ LN++RC S D
Sbjct: 301 DIANQGMEINHQGIAHLTNLHNLRHLDFSGKPICDKGIEFIGKLNSIEILNVSRCNCSGD 360
Query: 244 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 303
E K L LN+ N I D+ L +T LE LN +CGI +G V L G +K
Sbjct: 361 -IESLQKSPHLINLNIVGNPIGDKGAEILSRMT-LEELNARNCGISYDG-VKLIGNSKIK 417
Score = 42.4 bits (98), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 96/214 (44%), Gaps = 6/214 (2%)
Query: 179 LTNLKSLQISCSKVT-DSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL--FYLNL 235
L N+ SL++ + V + +LK L+ L N E T + ++ L +L F +
Sbjct: 61 LNNITSLKVRFNTVVLIPRMNHLKHLEILENPN-EKSQFTDIRVGTICKLKNLESFVVRF 119
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITD-ECLVHLKGLTNLESLNLDSCGIGDEGLV 294
+L + EK S + L L + + D E + + L LN+ + +
Sbjct: 120 PNPRLPPEYFEKLSVLSKLTELEISTDSSNDWEKAKSISTFSQLTKLNIQCSKNINMIIT 179
Query: 295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 354
++ L NL L S + S L+ L L L ++LS I ++ +A L++LK LN
Sbjct: 180 SVGSLSNLTYLNASQCNISSVNLKFLQ-LFKLTKLDLSKNNIGGDGMKVIALLTNLKYLN 238
Query: 355 LDARQITDTGLAALTSLTGLTHLDLFGARITDSG 388
L IT+ + LTSLT L HL++ I + G
Sbjct: 239 LQDCNITNDCITHLTSLTKLVHLNVGDNYIGNEG 272
>gi|38154344|gb|AAR12159.1| internalin A [Listeria monocytogenes]
Length = 685
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 115/358 (32%), Positives = 172/358 (48%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 42 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 95
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 96 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 147
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 148 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 200
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 201 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 254
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 255 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 312
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 313 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNY 368
>gi|290991518|ref|XP_002678382.1| predicted protein [Naegleria gruberi]
gi|284091994|gb|EFC45638.1| predicted protein [Naegleria gruberi]
Length = 344
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 88/342 (25%), Positives = 147/342 (42%), Gaps = 31/342 (9%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC-IQISDGGLEHLRGL-SNLTSLSFR 114
L+ +D+ G+++ D G+ + L L+ C +I D G++ L L S+LT L R
Sbjct: 26 KQLIKLDIGGTEIGDEGMKSIGKMKQLTKLEM--CGNKIGDEGIKALSNLNSSLTHLCVR 83
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
+NN I +G K L L LD+ + N + + K
Sbjct: 84 KNN-IGQEGAKTLKHLTRLNYLDIRK-------------------------NKLGNQGAK 117
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
+S L L L I + + D G + +Q LT L + P+ S+S L L L
Sbjct: 118 EISELPQLTRLFICKNNIGDEGAKAIGEIQTLTQLVMSENPIGDGGAISVSQLRHLKTLC 177
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
+ + +G + + L L++ N++ + + + L L L + IGD G
Sbjct: 178 IQWTNVRTEGIKAICNMKQLTCLHIQSNKLGFDDIKPIGQLNQLTRLLISDNQIGDSGAK 237
Query: 295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 354
++ L L L + D+ +G G + LSG+ NL +NLS I + L ++G+ L+ L+
Sbjct: 238 IISELNQLTNLRIYDSNIGIEGAKSLSGMKNLTKLNLSGNKIGNKGLEAISGMLQLQKLS 297
Query: 355 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRSKF 396
+ +I D G L ++ L L G I+D LR K
Sbjct: 298 VIHCEIGDEGAKYLLNMPNLRKL-YIGDDISDRIIKELRKKM 338
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 82/179 (45%), Gaps = 7/179 (3%)
Query: 203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 262
+ + T LN+ P+T+ + + L L L++ ++ D+G + K+ L L + N
Sbjct: 1 MTQFTELNVFNNPITSKGAEYFTNLKQLIKLDIGGTEIGDEGMKSIGKMKQLTKLEMCGN 60
Query: 263 EITDECLVHLKGLTNLES----LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 318
+I DE +K L+NL S L + IG EG L L L L++ ++G+ G +
Sbjct: 61 KIGDEG---IKALSNLNSSLTHLCVRKNNIGQEGAKTLKHLTRLNYLDIRKNKLGNQGAK 117
Query: 319 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 377
+S L L + + I D + + + +L L + I D G +++ L L L
Sbjct: 118 EISELPQLTRLFICKNNIGDEGAKAIGEIQTLTQLVMSENPIGDGGAISVSQLRHLKTL 176
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 334
+T LN+ + I +G T L L L++ T++G G++ + + L + +
Sbjct: 1 MTQFTELNVFNNPITSKGAEYFTNLKQLIKLDIGGTEIGDEGMKSIGKMKQLTKLEMCGN 60
Query: 335 GISDGSLRKLAGL-SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
I D ++ L+ L SSL L + I G L LT L +LD+ ++ + GA +
Sbjct: 61 KIGDEGIKALSNLNSSLTHLCVRKNNIGQEGAKTLKHLTRLNYLDIRKNKLGNQGAKEI 119
>gi|242004502|ref|XP_002423122.1| fbxl14, putative [Pediculus humanus corporis]
gi|212506068|gb|EEB10384.1| fbxl14, putative [Pediculus humanus corporis]
Length = 461
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 100/321 (31%), Positives = 162/321 (50%), Gaps = 52/321 (16%)
Query: 61 SVDLSG-SDVTDSGLIH--LKDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRN 116
S++LSG +VTD GL H + L L+ + C Q++D L + + L+NL L
Sbjct: 161 SLNLSGCYNVTDIGLSHAFVTTLPTLTELNLSLCKQVTDTSLGRIAQYLTNLEVLELGGC 220
Query: 117 NAITAQGMKAFA-GLINLVKLDLERCTRIHG-GLVNLKGL--------MKLESLNIKWCN 166
+T G+ GL L +L+L C I G+ +L G LE L ++ C
Sbjct: 221 CNVTNTGLLLVGWGLKKLKRLNLRSCWHISDQGISHLAGPNPDVGDGNPALEYLGLQDCQ 280
Query: 167 CITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
++D ++ +S GLT LKS+ +S C +TDSG+ YL + L LNL C D++
Sbjct: 281 RLSDEALRHVSVGLTGLKSINLSFCVSITDSGLKYLAKMTSLRELNLRAC-------DNI 333
Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHL-KGLTNLESLN 282
S LG + L++ G S+I SL V F ++I D+ L+H+ +GL +L+SL+
Sbjct: 334 SDLGMAY--------LAEGG----SRISSLDV---SFCDKIGDQALLHVSQGLFHLKSLS 378
Query: 283 LDSCGIGDEGLV-------NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL-SFT 334
L++C I D+G+V +L L +C +++D V + + L +L I+L +
Sbjct: 379 LNACNISDDGIVRIAITLHDLETLNIGQCWKITDRGVHTI----VDSLKHLRCIDLYGCS 434
Query: 335 GISDGSLRKLAGLSSLKSLNL 355
I+ L ++ L L +LNL
Sbjct: 435 KITTVGLERIMKLPQLTTLNL 455
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 83/234 (35%), Positives = 117/234 (50%), Gaps = 44/234 (18%)
Query: 152 KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGI--AYLKGLQKLTL 208
+G+ +++ L++K S + G+ NL SL +S C VTD G+ A++ L LT
Sbjct: 135 RGIRRVQVLSLK------RSLRDVVQGIPNLDSLNLSGCYNVTDIGLSHAFVTTLPTLTE 188
Query: 209 LNLEGCP-VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 267
LNL C VT L ++ + NL +L GC + G L V G+
Sbjct: 189 LNLSLCKQVTDTSLGRIAQ----YLTNLEVLELG--GCCNVTNTGLLLV---GW------ 233
Query: 268 CLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGL--------CNLKCLELSDTQ-VGSSGL 317
GL L+ LNL SC I D+G+ +L G L+ L L D Q + L
Sbjct: 234 ------GLKKLKRLNLRSCWHISDQGISHLAGPNPDVGDGNPALEYLGLQDCQRLSDEAL 287
Query: 318 RHLS-GLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAAL 368
RH+S GLT L+SINLSF I+D L+ LA ++SL+ LNL A I+D G+A L
Sbjct: 288 RHVSVGLTGLKSINLSFCVSITDSGLKYLAKMTSLRELNLRACDNISDLGMAYL 341
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 94/310 (30%), Positives = 147/310 (47%), Gaps = 52/310 (16%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVN--LKGLMKLES 159
RG+ + LS +R+ QG+ NL L+L C + GL + + L L
Sbjct: 135 RGIRRVQVLSLKRSLRDVVQGIP------NLDSLNLSGCYNVTDIGLSHAFVTTLPTLTE 188
Query: 160 LNIKWCNCITDSDMKPLSG-LTNLKSLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGC-P 215
LN+ C +TD+ + ++ LTNL+ L++ C VT++G+ + GL+KL LNL C
Sbjct: 189 LNLSLCKQVTDTSLGRIAQYLTNLEVLELGGCCNVTNTGLLLVGWGLKKLKRLNLRSCWH 248
Query: 216 VTAACLDSLSALG--------SLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-NEI 264
++ + L+ +L YL L CQ LSD+ S + LK +NL F I
Sbjct: 249 ISDQGISHLAGPNPDVGDGNPALEYLGLQDCQRLSDEALRHVSVGLTGLKSINLSFCVSI 308
Query: 265 TDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 323
TD L +L +T+L LNL +C I D G+ L G
Sbjct: 309 TDSGLKYLAKMTSLRELNLRACDNISDLGMAYLA-----------------------EGG 345
Query: 324 TNLESINLSF-TGISDGSLRKLA-GLSSLKSLNLDARQITDTGLAALT-SLTGLTHLDLF 380
+ + S+++SF I D +L ++ GL LKSL+L+A I+D G+ + +L L L++
Sbjct: 346 SRISSLDVSFCDKIGDQALLHVSQGLFHLKSLSLNACNISDDGIVRIAITLHDLETLNIG 405
Query: 381 GA-RITDSGA 389
+ITD G
Sbjct: 406 QCWKITDRGV 415
>gi|223698619|gb|ACN18986.1| truncated internalin A [Listeria monocytogenes]
gi|223698691|gb|ACN19034.1| truncated internalin A [Listeria monocytogenes]
gi|223698706|gb|ACN19044.1| truncated internalin A [Listeria monocytogenes]
gi|223698715|gb|ACN19050.1| truncated internalin A [Listeria monocytogenes]
gi|223698781|gb|ACN19094.1| truncated internalin A [Listeria monocytogenes]
gi|223698784|gb|ACN19096.1| truncated internalin A [Listeria monocytogenes]
gi|223698814|gb|ACN19116.1| truncated internalin A [Listeria monocytogenes]
gi|223698838|gb|ACN19132.1| truncated internalin A [Listeria monocytogenes]
gi|223698844|gb|ACN19136.1| truncated internalin A [Listeria monocytogenes]
gi|223698850|gb|ACN19140.1| truncated internalin A [Listeria monocytogenes]
gi|223698856|gb|ACN19144.1| truncated internalin A [Listeria monocytogenes]
gi|223698880|gb|ACN19160.1| truncated internalin A [Listeria monocytogenes]
gi|223698958|gb|ACN19212.1| truncated internalin A [Listeria monocytogenes]
gi|223698967|gb|ACN19218.1| truncated internalin A [Listeria monocytogenes]
gi|223698970|gb|ACN19220.1| truncated internalin A [Listeria monocytogenes]
gi|223698973|gb|ACN19222.1| truncated internalin A [Listeria monocytogenes]
gi|223698982|gb|ACN19228.1| truncated internalin A [Listeria monocytogenes]
Length = 614
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 115/358 (32%), Positives = 172/358 (48%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 13 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 66
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 67 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 118
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 119 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 171
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 172 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 225
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 226 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 283
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 284 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNY 339
>gi|223698697|gb|ACN19038.1| truncated internalin A [Listeria monocytogenes]
gi|223698841|gb|ACN19134.1| truncated internalin A [Listeria monocytogenes]
gi|223698877|gb|ACN19158.1| truncated internalin A [Listeria monocytogenes]
gi|223698922|gb|ACN19188.1| truncated internalin A [Listeria monocytogenes]
Length = 406
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 115/358 (32%), Positives = 172/358 (48%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 13 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 66
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 67 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL--SFGNQVTD--LKPL 118
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 119 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 171
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 172 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 225
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 226 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 283
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 284 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNY 339
>gi|443316011|ref|ZP_21045475.1| Leucine Rich Repeat (LRR)-containing protein [Leptolyngbya sp. PCC
6406]
gi|442784393|gb|ELR94269.1| Leucine Rich Repeat (LRR)-containing protein [Leptolyngbya sp. PCC
6406]
Length = 437
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 104/338 (30%), Positives = 165/338 (48%), Gaps = 39/338 (11%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L S+ LSG+ ++D + L + L+SL F QI++ ++ L GL NLT LS N
Sbjct: 102 TNLTSLVLSGNQISD--IQPLASLTKLESL-FLESNQITN--IQSLGGLHNLTWLSLSGN 156
Query: 117 NAITAQGMKAFAGL----------INLVKL----DLERCTRIHGGLVNLKGLMKLESLNI 162
+ Q + GL +++ L +LER + +V + L LE L
Sbjct: 157 QVVDVQPLSNLTGLEWLFLDDNQIVDVAPLATLQNLERLLLSYNQIVEIGALSALEKLQN 216
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
+ N D++PLSGL NL L++ ++V + I L L+ L L L+ + +
Sbjct: 217 LYLNGNQIEDVQPLSGLRNLAWLELKENQVMN--IQPLADLENLRWLGLDDNQIVD--VQ 272
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282
L+AL +L L LN Q++D + + +L+ L LG N+I D ++ L+ LE N
Sbjct: 273 PLAALSTLKNLYLNGNQITD--VSSLAALTNLESLVLGDNQIVD-----IQSLSLLE--N 323
Query: 283 LDSCGIGDEGLVN---LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L + +VN L+ L L+ L L+D Q+ ++ L+ LTNL + LS I D
Sbjct: 324 LTFLVLSGNQIVNVSPLSALVRLERLGLNDNQI--QDVQPLATLTNLSVLVLSNNQIVD- 380
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 377
+ LA L ++ L+LD QI D + S GL HL
Sbjct: 381 -VEPLAALENVGLLSLDHNQIVDIQPLSQLSRLGLLHL 417
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 81/223 (36%), Positives = 116/223 (52%), Gaps = 29/223 (13%)
Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
D++PLS LTNL SL +S ++++D I L L KL L LE +T + SL L +L
Sbjct: 94 DVRPLSTLTNLTSLVLSGNQISD--IQPLASLTKLESLFLESNQIT--NIQSLGGLHNLT 149
Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC-----------------LVHLKG 274
+L+L+ Q+ D + S + L+ L L N+I D +V +
Sbjct: 150 WLSLSGNQVVD--VQPLSNLTGLEWLFLDDNQIVDVAPLATLQNLERLLLSYNQIVEIGA 207
Query: 275 LTNLESL-NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333
L+ LE L NL G E + L+GL NL LEL + QV ++ L+ L NL + L
Sbjct: 208 LSALEKLQNLYLNGNQIEDVQPLSGLRNLAWLELKENQV--MNIQPLADLENLRWLGLDD 265
Query: 334 TGISDGSLRKLAGLSSLKSLNLDARQITD-TGLAALTSLTGLT 375
I D ++ LA LS+LK+L L+ QITD + LAALT+L L
Sbjct: 266 NQIVD--VQPLAALSTLKNLYLNGNQITDVSSLAALTNLESLV 306
>gi|371942074|gb|AEX60849.1| internaline [Listeria monocytogenes]
gi|371942102|gb|AEX60863.1| internaline [Listeria monocytogenes]
gi|371942114|gb|AEX60869.1| internaline [Listeria monocytogenes]
gi|371942124|gb|AEX60874.1| internaline [Listeria monocytogenes]
Length = 790
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 115/358 (32%), Positives = 171/358 (47%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNY 424
>gi|149173736|ref|ZP_01852365.1| leucine-rich repeat domain protein [Planctomyces maris DSM 8797]
gi|148847266|gb|EDL61600.1| leucine-rich repeat domain protein [Planctomyces maris DSM 8797]
Length = 496
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 108/243 (44%), Gaps = 28/243 (11%)
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT-AACLDSLSALGSLFYLNL 235
GL + + + +++TD G+ YL L L LNL+ VT A L L L L L+L
Sbjct: 116 PGLRPVPAANVRRNQITDRGLGYLTELSSLRSLNLQATRVTDAGLLQYLPELPRLQRLSL 175
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT--NLESLNLDSCGIGDEGL 293
++D + L+ +NLG +++E +++L G +L LNL + + D+ L
Sbjct: 176 ACLDITDAALLALESLAWLESINLGHTAVSNEAILNLVGAKAFSLRRLNLSNTAVNDQAL 235
Query: 294 VNLTGLCNLKCLELSD------------------------TQVGSSGLRHLSGLTNLESI 329
L LELSD T + G+RHL+ +L +
Sbjct: 236 AECLPDSQLNKLELSDTGITDAACQSCVECEWLTDLCLNFTDITDDGVRHLANCGHLRKL 295
Query: 330 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 389
L T I+D SL LA S ++ L L ITD G+ ALT L LDL +TD G
Sbjct: 296 ELFKTKITDTSLVWLAD-SGIEDLGLGFTAITDAGIPALTDFPALESLDLQKTSLTDKGL 354
Query: 390 AYL 392
+L
Sbjct: 355 RFL 357
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 76/267 (28%), Positives = 126/267 (47%), Gaps = 29/267 (10%)
Query: 152 KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGI-AYLKGLQKLTLLN 210
GL + + N++ N ITD + L+ L++L+SL + ++VTD+G+ YL L +L L+
Sbjct: 116 PGLRPVPAANVRR-NQITDRGLGYLTELSSLRSLNLQATRVTDAGLLQYLPELPRLQRLS 174
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF--SKIGSLKVLNLGFNEITDEC 268
L +T A L +L +L L +NL +S++ +K SL+ LNL + D+
Sbjct: 175 LACLDITDAALLALESLAWLESINLGHTAVSNEAILNLVGAKAFSLRRLNLSNTAVNDQA 234
Query: 269 LVHLKGLTNLESLNLDSCGIGD------------------------EGLVNLTGLCNLKC 304
L + L L L GI D +G+ +L +L+
Sbjct: 235 LAECLPDSQLNKLELSDTGITDAACQSCVECEWLTDLCLNFTDITDDGVRHLANCGHLRK 294
Query: 305 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 364
LEL T++ + L L+ + +E + L FT I+D + L +L+SL+L +TD G
Sbjct: 295 LELFKTKITDTSLVWLAD-SGIEDLGLGFTAITDAGIPALTDFPALESLDLQKTSLTDKG 353
Query: 365 LAALTSLTGLTHLDLFGARITDSGAAY 391
L L+ T L L L I+ +G +
Sbjct: 354 LRFLSEATNLKQLQLDNTEISHAGIEF 380
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 98/357 (27%), Positives = 154/357 (43%), Gaps = 48/357 (13%)
Query: 57 SSLLSVDLSGSDVTDSGLI-HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
SSL S++L + VTD+GL+ +L + LQ L C+ I+D L L L+ L S+
Sbjct: 143 SSLRSLNLQATRVTDAGLLQYLPELPRLQRLSL-ACLDITDAALLALESLAWLESI---- 197
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
N TA +A L+ L R + VN + L + C+ DS
Sbjct: 198 NLGHTAVSNEAILNLVGAKAFSLRRLN-LSNTAVNDQALAE----------CLPDS---- 242
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
L L++S + +TD+ + LT L L +T + L+ G L L L
Sbjct: 243 -----QLNKLELSDTGITDAACQSCVECEWLTDLCLNFTDITDDGVRHLANCGHLRKLEL 297
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
+ +++D + G ++ L LGF ITD + L LESL+L + D+GL
Sbjct: 298 FKTKITDTSLVWLADSG-IEDLGLGFTAITDAGIPALTDFPALESLDLQKTSLTDKGLRF 356
Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355
L+ NLK L+L +T++ +G+ L L GI + L L +SL++L +
Sbjct: 357 LSEATNLKQLQLDNTEISHAGIEFLLSLP--LESLSLNPGIDNAGLNTLVRHNSLRNLAI 414
Query: 356 DARQITD-------------------TGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
+T+ T L+ L L L +L L+G R + + A LR
Sbjct: 415 WNCNVTNWQPLMKLELLEVLLIDDSVTDLSPLRELDQLKYLLLWGDRFSPTELARLR 471
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/133 (37%), Positives = 73/133 (54%), Gaps = 5/133 (3%)
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 315
++NL +E+ +E L HL E+L LD+ I D GL + + NL+ L L DT V
Sbjct: 32 LVNLMNSEVANEDLRHLIFYPGFEALILDNTSISDAGLNFIGEMRNLERLGLYDTLVSDD 91
Query: 316 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 375
GL+ L L+ LE +N++ + G L GL + + N+ QITD GL LT L+ L
Sbjct: 92 GLKPLLKLSKLEKLNIA---CAPGCLSP--GLRPVPAANVRRNQITDRGLGYLTELSSLR 146
Query: 376 HLDLFGARITDSG 388
L+L R+TD+G
Sbjct: 147 SLNLQATRVTDAG 159
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 87/189 (46%), Gaps = 16/189 (8%)
Query: 15 VYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGL 74
++ +T+ SL D ++DL LG + + D + + + +L S+DL + +TD GL
Sbjct: 297 LFKTKITDTSLVWLADSGIEDLGLG-FTAITDAGIPAL-TDFPALESLDLQKTSLTDKGL 354
Query: 75 IHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134
L + +NL+ L + +IS G+E L L + N I G+ +L
Sbjct: 355 RFLSEATNLKQLQLDN-TEISHAGIEFLLSLPLESLSL---NPGIDNAGLNTLVRHNSLR 410
Query: 135 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDS--DMKPLSGLTNLKSLQISCSKV 192
L + C + N + LMKLE L + I DS D+ PL L LK L + +
Sbjct: 411 NLAIWNC-----NVTNWQPLMKLELLEVL---LIDDSVTDLSPLRELDQLKYLLLWGDRF 462
Query: 193 TDSGIAYLK 201
+ + +A L+
Sbjct: 463 SPTELARLR 471
>gi|167861900|gb|ACA05649.1| InlA [Listeria monocytogenes]
gi|194326161|emb|CAQ77239.1| internalin A [Listeria monocytogenes]
gi|298360364|gb|ADI77761.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 105/329 (31%), Positives = 166/329 (50%), Gaps = 39/329 (11%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
L GL L LEL++ Q+ + +S L NL + L F ISD + ++ L+ L+ L
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRL 366
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGA 382
+++D ++SL LT+++ A
Sbjct: 367 FFYNNKVSD-----VSSLANLTNINWLSA 390
>gi|371942096|gb|AEX60860.1| internaline [Listeria monocytogenes]
Length = 790
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 115/358 (32%), Positives = 171/358 (47%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNY 424
>gi|371942104|gb|AEX60864.1| internaline [Listeria monocytogenes]
Length = 790
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 115/358 (32%), Positives = 171/358 (47%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNY 424
>gi|148607482|gb|ABQ95519.1| InlA [Listeria monocytogenes]
Length = 800
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 115/358 (32%), Positives = 172/358 (48%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNY 424
>gi|290987592|ref|XP_002676506.1| predicted protein [Naegleria gruberi]
gi|284090109|gb|EFC43762.1| predicted protein [Naegleria gruberi]
Length = 259
Score = 77.8 bits (190), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 103/214 (48%)
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
+ L L+I + + D +++LT L++ ++ + + L YLN+N
Sbjct: 32 MKQLTKLKIGENNIGDQNAKCFIEMKQLTSLDVYHNNISKEGAKFIGEMTQLTYLNVNTN 91
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
+ + G + SK+ L LN+G N I ++ ++ + L LN+ SC IG+ G +++
Sbjct: 92 NVGELGAKYISKLNQLITLNIGLNSIGEQGAEYISEMKQLTDLNIYSCNIGNRGANHISR 151
Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
+ L L + G++++S L L +N++ + IS+ L ++G+ + L++
Sbjct: 152 MKQLISLNTGRNGLDDEGVKYISELNQLNFLNIADSNISEEGLNYISGMKQIIHLDISNN 211
Query: 359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
I D G ++ + LT LD+ I + G Y+
Sbjct: 212 FIDDEGAEIISRMKQLTRLDISNNSIGEEGTKYI 245
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 100/214 (46%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
N I D + K + L SL + + ++ G ++ + +LT LN+ V +S
Sbjct: 43 NNIGDQNAKCFIEMKQLTSLDVYHNNISKEGAKFIGEMTQLTYLNVNTNNVGELGAKYIS 102
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
L L LN+ + + G E S++ L LN+ I + H+ + L SLN
Sbjct: 103 KLNQLITLNIGLNSIGEQGAEYISEMKQLTDLNIYSCNIGNRGANHISRMKQLISLNTGR 162
Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 345
G+ DEG+ ++ L L L ++D+ + GL ++SG+ + +++S I D ++
Sbjct: 163 NGLDDEGVKYISELNQLNFLNIADSNISEEGLNYISGMKQIIHLDISNNFIDDEGAEIIS 222
Query: 346 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
+ L L++ I + G ++ + LT+LD+
Sbjct: 223 RMKQLTRLDISNNSIGEEGTKYISEMKKLTYLDI 256
Score = 46.2 bits (108), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 42/190 (22%), Positives = 76/190 (40%), Gaps = 48/190 (25%)
Query: 248 FSKIGSLKVLNLGFNEITDE---CLVHLKGLTNLE------------------------- 279
F + L L +G N I D+ C + +K LT+L+
Sbjct: 29 FGTMKQLTKLKIGENNIGDQNAKCFIEMKQLTSLDVYHNNISKEGAKFIGEMTQLTYLNV 88
Query: 280 --------------------SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 319
+LN+ IG++G ++ + L L + +G+ G H
Sbjct: 89 NTNNVGELGAKYISKLNQLITLNIGLNSIGEQGAEYISEMKQLTDLNIYSCNIGNRGANH 148
Query: 320 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
+S + L S+N G+ D ++ ++ L+ L LN+ I++ GL ++ + + HLD+
Sbjct: 149 ISRMKQLISLNTGRNGLDDEGVKYISELNQLNFLNIADSNISEEGLNYISGMKQIIHLDI 208
Query: 380 FGARITDSGA 389
I D GA
Sbjct: 209 SNNFIDDEGA 218
>gi|130774809|gb|ABO32417.1| InlA [Listeria monocytogenes]
Length = 800
Score = 77.8 bits (190), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 115/358 (32%), Positives = 172/358 (48%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNY 424
>gi|371942126|gb|AEX60875.1| internaline [Listeria monocytogenes]
Length = 790
Score = 77.8 bits (190), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 115/358 (32%), Positives = 171/358 (47%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNY 424
>gi|112961787|gb|ABI28544.1| internalin A [Listeria monocytogenes]
Length = 696
Score = 77.8 bits (190), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 115/351 (32%), Positives = 166/351 (47%), Gaps = 54/351 (15%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
S + +TD + LKD + L + N QI+D + L L+NLT L+ NN IT
Sbjct: 1 FSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQIT--D 52
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
+ L NL +L+L T + L GL L+ L+ N +TD +KPL+ LT L+
Sbjct: 53 IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPLANLTTLE 106
Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNLNRCQL 240
L IS +KV+D + L KLT NLE T + ++ LG +L L+LN QL
Sbjct: 107 RLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSLNGNQL 159
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
D G + + +L L+L N+I++ L L GLT L L L + I + + L GL
Sbjct: 160 KDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLT 213
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------------- 343
L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 214 ALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSD 271
Query: 344 ---LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 272 VSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNY 320
>gi|255028812|ref|ZP_05300763.1| internalin A [Listeria monocytogenes LO28]
Length = 502
Score = 77.8 bits (190), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 115/358 (32%), Positives = 172/358 (48%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 90 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 143
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 144 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL--SFGNQVTD--LKPL 195
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 196 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 248
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 249 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 302
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 303 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 360
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 361 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNY 416
>gi|112961784|gb|ABI28542.1| internalin A [Listeria monocytogenes]
gi|112961796|gb|ABI28550.1| internalin A [Listeria monocytogenes]
Length = 696
Score = 77.8 bits (190), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 115/351 (32%), Positives = 166/351 (47%), Gaps = 54/351 (15%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
S + +TD + LKD + L + N QI+D + L L+NLT L+ NN IT
Sbjct: 1 FSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQIT--D 52
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
+ L NL +L+L T + L GL L+ L+ N +TD +KPL+ LT L+
Sbjct: 53 IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPLANLTTLE 106
Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNLNRCQL 240
L IS +KV+D + L KLT NLE T + ++ LG +L L+LN QL
Sbjct: 107 RLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSLNGNQL 159
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
D G + + +L L+L N+I++ L L GLT L L L + I + + L GL
Sbjct: 160 KDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLT 213
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------------- 343
L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 214 ALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSD 271
Query: 344 ---LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 272 VSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNY 320
>gi|223698700|gb|ACN19040.1| truncated internalin A [Listeria monocytogenes]
Length = 599
Score = 77.8 bits (190), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 115/358 (32%), Positives = 172/358 (48%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 13 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 66
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 67 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL--SFGNQVTD--LKPL 118
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 119 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 171
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 172 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 225
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 226 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 283
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 284 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNY 339
>gi|112961778|gb|ABI28538.1| internalin A [Listeria monocytogenes]
Length = 696
Score = 77.8 bits (190), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 115/351 (32%), Positives = 166/351 (47%), Gaps = 54/351 (15%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
S + +TD + LKD + L + N QI+D + L L+NLT L+ NN IT
Sbjct: 1 FSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQIT--D 52
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
+ L NL +L+L T + L GL L+ L+ N +TD +KPL+ LT L+
Sbjct: 53 IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPLANLTTLE 106
Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNLNRCQL 240
L IS +KV+D + L KLT NLE T + ++ LG +L L+LN QL
Sbjct: 107 RLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSLNGNQL 159
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
D G + + +L L+L N+I++ L L GLT L L L + I + + L GL
Sbjct: 160 KDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLT 213
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------------- 343
L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 214 ALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSD 271
Query: 344 ---LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 272 VSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNY 320
>gi|255025517|ref|ZP_05297503.1| internalin A [Listeria monocytogenes FSL J2-003]
Length = 744
Score = 77.8 bits (190), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 115/358 (32%), Positives = 172/358 (48%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNY 424
>gi|313485070|gb|ADR53006.1| InlA [Listeria monocytogenes]
Length = 800
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 105/329 (31%), Positives = 166/329 (50%), Gaps = 39/329 (11%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
L GL L LEL++ Q+ + +S L NL + L F ISD + ++ L+ L+ L
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRL 366
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGA 382
+++D ++SL LT+++ A
Sbjct: 367 FFYNNKVSD-----VSSLANLTNINWLSA 390
>gi|290986246|ref|XP_002675835.1| predicted protein [Naegleria gruberi]
gi|284089434|gb|EFC43091.1| predicted protein [Naegleria gruberi]
Length = 820
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 104/202 (51%), Gaps = 13/202 (6%)
Query: 197 IAYLKGLQKLTLLNL------EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 250
I +LK +++LTLL+ EG + +S + L L+++ + +G + S+
Sbjct: 617 INFLKKMKQLTLLDFIYNIGDEGAKL-------ISEMKQLTSLDISENNIGVEGAKYISE 669
Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 310
+ L LN+ NEI E + ++ + L SL++ IG EG ++ + L L++S+
Sbjct: 670 MKQLTSLNICRNEIGVEGVKYISEMKQLTSLDISYNKIGVEGAKYISEMKQLTSLDISEN 729
Query: 311 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 370
+G G +++S + L S+++++ I D + ++ + L SLN+ +I G+ ++
Sbjct: 730 NIGVEGAKYISEMKQLTSLDINYNKIGDEGAKYISKMKQLTSLNIRRNEIGVEGVKYISE 789
Query: 371 LTGLTHLDLFGARITDSGAAYL 392
+ LT LD+ +I GA YL
Sbjct: 790 MKQLTSLDISYNKIGVEGAKYL 811
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 100/201 (49%), Gaps = 3/201 (1%)
Query: 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS 195
L L +C L+N MK +L + + I D K +S + L SL IS + +
Sbjct: 606 LTLNKCP--SNELINFLKKMKQLTL-LDFIYNIGDEGAKLISEMKQLTSLDISENNIGVE 662
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G Y+ +++LT LN+ + + +S + L L+++ ++ +G + S++ L
Sbjct: 663 GAKYISEMKQLTSLNICRNEIGVEGVKYISEMKQLTSLDISYNKIGVEGAKYISEMKQLT 722
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 315
L++ N I E ++ + L SL+++ IGDEG ++ + L L + ++G
Sbjct: 723 SLDISENNIGVEGAKYISEMKQLTSLDINYNKIGDEGAKYISKMKQLTSLNIRRNEIGVE 782
Query: 316 GLRHLSGLTNLESINLSFTGI 336
G++++S + L S+++S+ I
Sbjct: 783 GVKYISEMKQLTSLDISYNKI 803
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/182 (21%), Positives = 89/182 (48%)
Query: 194 DSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS 253
D G + +++LT L++ + +S + L LN+ R ++ +G + S++
Sbjct: 637 DEGAKLISEMKQLTSLDISENNIGVEGAKYISEMKQLTSLNICRNEIGVEGVKYISEMKQ 696
Query: 254 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 313
L L++ +N+I E ++ + L SL++ IG EG ++ + L L+++ ++G
Sbjct: 697 LTSLDISYNKIGVEGAKYISEMKQLTSLDISENNIGVEGAKYISEMKQLTSLDINYNKIG 756
Query: 314 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 373
G +++S + L S+N+ I ++ ++ + L SL++ +I G L+ +
Sbjct: 757 DEGAKYISKMKQLTSLNIRRNEIGVEGVKYISEMKQLTSLDISYNKIGVEGAKYLSEMKT 816
Query: 374 LT 375
T
Sbjct: 817 KT 818
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 94/216 (43%), Gaps = 28/216 (12%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
LK L LDF I D G + + + LTSL NN I +G K + + L L
Sbjct: 620 LKKMKQLTLLDF--IYNIGDEGAKLISEMKQLTSLDISENN-IGVEGAKYISEMKQLTSL 676
Query: 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG 196
++ R N I +K +S + L SL IS +K+ G
Sbjct: 677 NICR-------------------------NEIGVEGVKYISEMKQLTSLDISYNKIGVEG 711
Query: 197 IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 256
Y+ +++LT L++ + +S + L L++N ++ D+G + SK+ L
Sbjct: 712 AKYISEMKQLTSLDISENNIGVEGAKYISEMKQLTSLDINYNKIGDEGAKYISKMKQLTS 771
Query: 257 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
LN+ NEI E + ++ + L SL++ IG EG
Sbjct: 772 LNIRRNEIGVEGVKYISEMKQLTSLDISYNKIGVEG 807
Score = 45.4 bits (106), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L S+D+S +++ G ++ + L SLD N+ +I D G +++ + LTSL+
Sbjct: 716 SEMKQLTSLDISENNIGVEGAKYISEMKQLTSLDINYN-KIGDEGAKYISKMKQLTSLNI 774
Query: 114 RRNNAITAQGMKAFAGLINLVKLDL 138
RR N I +G+K + + L LD+
Sbjct: 775 RR-NEIGVEGVKYISEMKQLTSLDI 798
>gi|167861940|gb|ACA05669.1| InlA [Listeria monocytogenes]
gi|167861954|gb|ACA05676.1| InlA [Listeria monocytogenes]
gi|194239400|emb|CAQ76840.1| internalin A [Listeria monocytogenes]
gi|298360640|gb|ADI77899.1| truncated internalin A [Listeria monocytogenes]
gi|298360688|gb|ADI77923.1| truncated internalin A [Listeria monocytogenes]
gi|443428860|gb|AGC92229.1| truncated internalin A [Listeria monocytogenes]
gi|443428878|gb|AGC92238.1| truncated internalin A [Listeria monocytogenes]
Length = 684
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 115/358 (32%), Positives = 172/358 (48%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNY 424
>gi|130774793|gb|ABO32411.1| InlA [Listeria monocytogenes]
gi|194239384|emb|CAQ76832.1| internalin A [Listeria monocytogenes]
Length = 797
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 115/358 (32%), Positives = 172/358 (48%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNY 424
>gi|371942136|gb|AEX60880.1| internaline [Listeria monocytogenes]
Length = 789
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 105/329 (31%), Positives = 166/329 (50%), Gaps = 39/329 (11%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
L GL L LEL++ Q+ + +S L NL + L F ISD + ++ L+ L+ L
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRL 366
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGA 382
+++D ++SL LT+++ A
Sbjct: 367 FFYNNKVSD-----VSSLANLTNINWLSA 390
>gi|112961781|gb|ABI28540.1| internalin A [Listeria monocytogenes]
Length = 696
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 115/351 (32%), Positives = 166/351 (47%), Gaps = 54/351 (15%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
S + +TD + LKD + L + N QI+D + L L+NLT L+ NN IT
Sbjct: 1 FSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQIT--D 52
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
+ L NL +L+L T + L GL L+ L+ N +TD +KPL+ LT L+
Sbjct: 53 IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPLANLTTLE 106
Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNLNRCQL 240
L IS +KV+D + L KLT NLE T + ++ LG +L L+LN QL
Sbjct: 107 RLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSLNGNQL 159
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
D G + + +L L+L N+I++ L L GLT L L L + I + + L GL
Sbjct: 160 KDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLT 213
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------------- 343
L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 214 ALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSD 271
Query: 344 ---LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 272 VSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNY 320
>gi|298360724|gb|ADI77941.1| truncated internalin A [Listeria monocytogenes]
Length = 403
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 106/322 (32%), Positives = 164/322 (50%), Gaps = 35/322 (10%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNT--ISDISALSGLTSLQQL--SFGNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
L GL L LEL++ Q+ + +S L NL + L F ISD + ++ L+ L+ L
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRL 366
Query: 354 NLDARQITD-TGLAALTSLTGL 374
+++D + LA LT++ L
Sbjct: 367 FFYNNKVSDVSSLANLTNINWL 388
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 83/278 (29%), Positives = 128/278 (46%), Gaps = 56/278 (20%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCNCITDSD 172
A+ MK G N+ + DL++ T + + +K + LE LN I + N +D
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQL-TD 112
Query: 173 MKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
+ PL LT L + ++ +++ D + +A L L LTL N + + D L L
Sbjct: 113 ITPLKDLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDI-----DPLKNLT--- 164
Query: 232 YLNLNRCQLSDDGCEKFSKIG---SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 288
NLNR +LS + S + SL+ L+ G N++TD L L LT LE L++ S +
Sbjct: 165 --NLNRLELSSNTISDISALSGLTSLQQLSFG-NQVTD--LKPLANLTTLERLDISSNKV 219
Query: 289 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 348
D + L+ LTNLES+ + ISD + L L+
Sbjct: 220 SD--------------------------ISVLAKLTNLESLIATNNQISD--ITPLGILT 251
Query: 349 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
+L L+L+ Q+ D G L SLT LT LDL +I++
Sbjct: 252 NLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQISN 287
>gi|366165824|ref|ZP_09465579.1| internalin A [Acetivibrio cellulolyticus CD2]
Length = 614
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 105/336 (31%), Positives = 159/336 (47%), Gaps = 59/336 (17%)
Query: 83 LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT 142
L+ LD N+ + S L L GL NLT L+ NA + + + L NL L L
Sbjct: 160 LEYLDLNYYVTTS-SDLICLEGLDNLTELNL---NAYKIRDLSHLSNLSNLQILKLN--- 212
Query: 143 RIHGGLVNLKGLMKLESLN--IKWCNCITD-SDMKPLSGLTNLKSLQISCSKVTD-SGIA 198
+G + +K L LE L+ I + N +T+ ++ LS +NL +L+I + D SGI+
Sbjct: 213 --NGPDIKMKPLCGLEKLHTLIVYSNLLTNLNNYSELSA-SNLSTLEILSGNLNDISGIS 269
Query: 199 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF---YLNL------------NRCQLSD- 242
+K L KLTL ++ L +SA+G+L YLNL N LS+
Sbjct: 270 NIKSLTKLTL-------ISNINLSDISAIGNLTNLSYLNLCNNNIVDTTPIGNLTNLSEL 322
Query: 243 -------DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
F+ + +L L L N I D + L LT L L +D+ I V+
Sbjct: 323 YLYENNISDVSSFASLTNLSTLYLHNNNIVD--VSSLSNLTKLSDLTIDNNKI-----VD 375
Query: 296 LTGLCNLK--CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
+ LCNLK C++ S + + +S +TN+ S+NL+ I D + L+ L+ L +L
Sbjct: 376 IAPLCNLKLGCIDFSFNNI--VDISPISKVTNIYSVNLNNNNIVD--ISPLSNLTMLYTL 431
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 389
NL ITD + L +L ++HL+L ITD A
Sbjct: 432 NLSNNLITD--ITPLGNLNSVSHLNLINNPITDVSA 465
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 74/254 (29%), Positives = 122/254 (48%), Gaps = 35/254 (13%)
Query: 138 LERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGI 197
LE+C R G K+ I D+K NL+SL++ S GI
Sbjct: 92 LEKCIRYATG---------------KFTGDIYYGDVK------NLESLEVD-SAFDFEGI 129
Query: 198 AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 257
+L L+KLT ++E + L ++S+L L YL+LN + + +L L
Sbjct: 130 QFLTSLKKLTAKSIEES--YSLDLSAISSLKQLEYLDLNYYVTTSSDLICLEGLDNLTEL 187
Query: 258 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 317
NL +I D L HL L+NL+ L L++ G + + + LC L+ +L V S+ L
Sbjct: 188 NLNAYKIRD--LSHLSNLSNLQILKLNN---GPD--IKMKPLCGLE--KLHTLIVYSNLL 238
Query: 318 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN--LDARQITDTGLAALTSLTGLT 375
+L+ + L + NLS I G+L ++G+S++KSL I + ++A+ +LT L+
Sbjct: 239 TNLNNYSELSASNLSTLEILSGNLNDISGISNIKSLTKLTLISNINLSDISAIGNLTNLS 298
Query: 376 HLDLFGARITDSGA 389
+L+L I D+
Sbjct: 299 YLNLCNNNIVDTTP 312
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 67/242 (27%), Positives = 108/242 (44%), Gaps = 18/242 (7%)
Query: 150 NLKGLMKLESLNIKWCNCITDS---DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
+ +G+ L SL I +S D+ +S L L+ L ++ T S + L+GL L
Sbjct: 125 DFEGIQFLTSLKKLTAKSIEESYSLDLSAISSLKQLEYLDLNYYVTTSSDLICLEGLDNL 184
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 266
T LNL + L LS L +L L LN D + + L L +
Sbjct: 185 TELNLNAYKIRD--LSHLSNLSNLQILKLNNGP--DIKMKPLCGLEKLHTL-----IVYS 235
Query: 267 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL-ELS-DTQVGSSGLRHLSGLT 324
L +L + L + NL + I L +++G+ N+K L +L+ + + S + + LT
Sbjct: 236 NLLTNLNNYSELSASNLSTLEILSGNLNDISGISNIKSLTKLTLISNINLSDISAIGNLT 295
Query: 325 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 384
NL +NL I D + + L++L L L I+D +++ SLT L+ L L I
Sbjct: 296 NLSYLNLCNNNIVDTT--PIGNLTNLSELYLYENNISD--VSSFASLTNLSTLYLHNNNI 351
Query: 385 TD 386
D
Sbjct: 352 VD 353
>gi|290350826|dbj|BAI78334.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 105/329 (31%), Positives = 166/329 (50%), Gaps = 39/329 (11%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
L GL L LEL++ Q+ + +S L NL + L F ISD + ++ L+ L+ L
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRL 366
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGA 382
+++D ++SL LT+++ A
Sbjct: 367 FFYNNKVSD-----VSSLANLTNINWLSA 390
>gi|198432493|ref|XP_002130800.1| PREDICTED: similar to F-box and leucine-rich repeat protein 13
[Ciona intestinalis]
Length = 798
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 111/409 (27%), Positives = 190/409 (46%), Gaps = 48/409 (11%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCS-NLQSLDFNFC 91
+QDL + GVND+ M IA +LL +++S +++TD L L C N+Q L +C
Sbjct: 321 VQDLNFSECKGVNDEVMRTIAESCPTLLYLNISHTEITDGTLRTLSRCCLNMQYLSLAYC 380
Query: 92 IQISDGGLEHL---RGLSNLTSLSFRRNNAITAQGMKAFA----GLINLVKLDL------ 138
+ +D GL ++ +G LT + F ITAQG + A L ++V D+
Sbjct: 381 SKYTDRGLHYMASGKGCRKLTYIDFSGCLQITAQGFRHVAHGCTSLQSIVLNDMPSLTDS 440
Query: 139 ------ERCTRIHG----GLVNLKGLM--------KLESLNIKWCNCITDSDMKPLSGLT 180
E+CT + G NL + KL+ L I+ ITD+ K L +
Sbjct: 441 CIISLVEKCTNLRSVSLIGSPNLTDMAFKALAQAKKLQKLRIESNQNITDNTFKTLGKMC 500
Query: 181 NL--KSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGS---LFYLN 234
+ C ++TD + L L+ + +LNL C ++ + + + S + +N
Sbjct: 501 PYIGHFYVVDCQRLTDMMLKALSPLRSIIVLNLADCVRISDSGVRQMVEGPSGSKIREMN 560
Query: 235 LNRC-QLSDDGCEKFS-KIGSLKVLNLGFNE-ITDECLVHLKGLTNLESLNLDSCGIGDE 291
L C ++SD + + + SL L L F E +TD + L + L ++L I D+
Sbjct: 561 LTNCVRVSDVSLLRVAQRCHSLTHLCLCFCEHVTDAGIELLGSMPALLHVDLSGTNIKDQ 620
Query: 292 GLVNLTGLCNLKCLELSDTQ-VGSSGLRHL-SGLTNLESINLSF-TGISDGSLRKLAGLS 348
GL +L ++ + +S+ Q + GL+ +T L+++++S +SD +++ LA
Sbjct: 621 GLASLGVNSRIRSVVMSECQGITDLGLQKFCQKVTELDTLDVSHCMSLSDAAIKNLAFCC 680
Query: 349 S-LKSLNLDA-RQITDTGLAALTSLTGLTH-LDLFGA-RITDSGAAYLR 393
L SLN+ +TD + L+ + H L+L G I+D YLR
Sbjct: 681 RMLTSLNVAGCPLLTDLSIQYLSGVCHYIHFLNLSGCIHISDRAVKYLR 729
>gi|56797881|emb|CAH04902.1| internalin A [Listeria monocytogenes]
Length = 773
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 105/329 (31%), Positives = 167/329 (50%), Gaps = 39/329 (11%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 71 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 124
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 125 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQL--SFGNQVTD--LKPL 176
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT+L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 177 ANLTSLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILANLDEL 229
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L ++I++ L L GLT L L L + I + +
Sbjct: 230 SLNGNQLKDIGT--LASLTNLTDLDLANDQISN--LAPLSGLTKLTELKLGANQISN--I 283
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
L GL L LEL++ Q+ + +S L NL + L F ISD + ++ L+ L+ L
Sbjct: 284 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRL 339
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGA 382
+++D ++SL LT+++ A
Sbjct: 340 FFYNNKVSD-----VSSLANLTNINWLSA 363
>gi|130774825|gb|ABO32425.1| InlA [Listeria monocytogenes]
Length = 800
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 105/329 (31%), Positives = 166/329 (50%), Gaps = 39/329 (11%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
L GL L LEL++ Q+ + +S L NL + L F ISD + ++ L+ L+ L
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRL 366
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGA 382
+++D ++SL LT+++ A
Sbjct: 367 FFYNNKVSD-----VSSLANLTNINWLSA 390
>gi|371942142|gb|AEX60883.1| internaline [Listeria monocytogenes]
Length = 790
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 115/358 (32%), Positives = 172/358 (48%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNY 424
>gi|371942086|gb|AEX60855.1| truncated internaline [Listeria monocytogenes]
gi|371942128|gb|AEX60876.1| truncated internaline [Listeria monocytogenes]
Length = 491
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 115/358 (32%), Positives = 172/358 (48%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNT--ISDISALSGLTSLQQL--SFGNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSDGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNY 424
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 83/278 (29%), Positives = 128/278 (46%), Gaps = 56/278 (20%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKWCNCITDSD 172
A+ MK G N+ + DL++ T + + +K + +E LN I + N +D
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQL-TD 112
Query: 173 MKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
+ PL LT L + ++ +++ D + +A L L LTL N + LD L L
Sbjct: 113 ITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQ-----ITDLDPLKNLT--- 164
Query: 232 YLNLNRCQLSDDGCEKFSKIG---SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 288
NLNR +LS + S + SL+ L+ G N++TD L L LT LE L++ S +
Sbjct: 165 --NLNRLELSSNTISDISALSGLTSLQQLSFG-NQVTD--LKPLANLTTLERLDISSNKV 219
Query: 289 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 348
D + L+ LTNLES+ + ISD + L L+
Sbjct: 220 SD--------------------------ISVLAKLTNLESLIATNNQISD--ITPLGILT 251
Query: 349 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
+L L+L+ Q+ D G L SLT LT LDL +I++
Sbjct: 252 NLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQISN 287
>gi|326487896|dbj|BAJ89787.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 661
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 117/403 (29%), Positives = 180/403 (44%), Gaps = 67/403 (16%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGS-DVTDSGLIHLKDCSNLQSLDFNFC 91
++ +CL + GV + ++ + + L +VDLS D L S L+ L+ C
Sbjct: 106 VRQVCLARASGVGWRGLEALVAACPRLEAVDLSHCVGAGDREAAALAAASGLRELNLEKC 165
Query: 92 IQISDGGLEHLR-GLSNLTSLSFRRNNAITAQGMKAFAGLI-NLVKLDLERCTRIHGGLV 149
+ ++D GL + G L +LSF+ I+ G+ +L LD+ + L
Sbjct: 166 LGVTDMGLAKVAVGCPRLETLSFKWCREISDIGVDLLVKKCRDLRSLDISYLKVSNESLR 225
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYL----KGL 203
++ L KLE L + C+CI D ++ LS G +L+S+ +S C+ VT G+A L L
Sbjct: 226 SISTLEKLEELAMVACSCIDDEGLELLSRGSNSLQSVDVSRCNHVTSQGLASLIDGHSFL 285
Query: 204 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE 263
QKL AA DSL +G F L + +L VL L E
Sbjct: 286 QKL----------NAA--DSLHEIGQNFLSKL------------VTLKATLTVLRLDGFE 321
Query: 264 ITDECLVHL-KGLTNLESLNLDSC-GIGDEGLVNLTGLCN-------------------- 301
++ L + +G TNL + L C G+ DEG+ +L C+
Sbjct: 322 VSSSLLSAIGEGCTNLVEIGLSKCNGVTDEGISSLVARCSYLRKIDLTCCNLVTNDSLDS 381
Query: 302 -------LKCLEL-SDTQVGSSGLRHL-SGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
L+CL L S + + GL + S NL+ I+L+ G++D +L LA S L
Sbjct: 382 IADNCKMLECLRLESCSSINEKGLERIASCCPNLKEIDLTDCGVNDEALHHLAKCSELLI 441
Query: 353 LNLD-ARQITDTGLAALTSLTG-LTHLDLFG-ARITDSGAAYL 392
L L + I+D GL ++S G L LDL+ + ITD G A L
Sbjct: 442 LKLGLSSSISDKGLGFISSKCGKLIELDLYRCSSITDDGLAAL 484
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 79/174 (45%), Gaps = 26/174 (14%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR 103
+N+K ++ IAS +L +DL+ V D L HL CS L L ISD GL +
Sbjct: 400 INEKGLERIASCCPNLKEIDLTDCGVNDEALHHLAKCSELLILKLGLSSSISDKGLGFIS 459
Query: 104 G-LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
L L R ++IT G+ A A G K++ LN+
Sbjct: 460 SKCGKLIELDLYRCSSITDDGLAALAN-----------------------GCKKIKLLNL 496
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISC-SKVTDSGI-AYLKGLQKLTLLNLEGC 214
+CN ITDS + L L L +L++ C ++T GI + + G + L L+L+ C
Sbjct: 497 CYCNKITDSGLSHLGALEELTNLELRCLVRITGIGISSVVIGCKSLVELDLKRC 550
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 108/375 (28%), Positives = 167/375 (44%), Gaps = 67/375 (17%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL- 102
++D +D++ + L S+D+S V++ L + L+ L C I D GLE L
Sbjct: 194 ISDIGVDLLVKKCRDLRSLDISYLKVSNESLRSISTLEKLEELAMVACSCIDDEGLELLS 253
Query: 103 RGLSNLTSLSFRRNNAITAQGM------KAFAGLINLVKLDLERCTRIHGGLVNLKG--- 153
RG ++L S+ R N +T+QG+ +F +N E LV LK
Sbjct: 254 RGSNSLQSVDVSRCNHVTSQGLASLIDGHSFLQKLNAADSLHEIGQNFLSKLVTLKATLT 313
Query: 154 LMKLESLNIKWCNCITDSDMKPL-SGLTNLKSLQIS-CSKVTDSGI-------AYLKGLQ 204
+++L+ ++ S + + G TNL + +S C+ VTD GI +YL+ +
Sbjct: 314 VLRLDGFE------VSSSLLSAIGEGCTNLVEIGLSKCNGVTDEGISSLVARCSYLRKID 367
Query: 205 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 264
LT NL VT LDS++ + C++ + C + S+ G I
Sbjct: 368 -LTCCNL----VTNDSLDSIA----------DNCKMLE--CLRLESCSSIN--EKGLERI 408
Query: 265 TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT 324
C NL+ ++L CG+ DE L +L KC EL ++G S GL
Sbjct: 409 ASCC-------PNLKEIDLTDCGVNDEALHHLA-----KCSELLILKLGLSSSISDKGLG 456
Query: 325 NLES-----INLSF---TGISDGSLRKLA-GLSSLKSLNL-DARQITDTGLAALTSLTGL 374
+ S I L + I+D L LA G +K LNL +ITD+GL+ L +L L
Sbjct: 457 FISSKCGKLIELDLYRCSSITDDGLAALANGCKKIKLLNLCYCNKITDSGLSHLGALEEL 516
Query: 375 THLDLFG-ARITDSG 388
T+L+L RIT G
Sbjct: 517 TNLELRCLVRITGIG 531
>gi|298359950|gb|ADI77554.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 115/358 (32%), Positives = 172/358 (48%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNY 424
>gi|427735495|ref|YP_007055039.1| Leucine Rich Repeat (LRR)-containing protein [Rivularia sp. PCC
7116]
gi|427370536|gb|AFY54492.1| Leucine Rich Repeat (LRR)-containing protein [Rivularia sp. PCC
7116]
Length = 396
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 103/321 (32%), Positives = 162/321 (50%), Gaps = 32/321 (9%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
SSL + L ++D L L +NL ++D + +ISD ++ L L+NLT+L+ N
Sbjct: 71 SSLTELRLLTKQISD--LKPLSGLTNLTNIDL-WGNKISD--VKPLVNLTNLTNLNIGGN 125
Query: 117 NAITAQGMKAFAGLINLVKLDL--ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
+K A L NL LDL + + + L +L L++L+ + N I SD+
Sbjct: 126 ---KISDVKPLASLTNLTNLDLGGNKISDV-TPLASLTNLIRLDV----YSNQI--SDIN 175
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
L L NL L++ +++ D + LT L LE ++ + LS+L +L LN
Sbjct: 176 SLENLNNLTFLRVGSNRIVD--VKQFANFTNLTELWLEENQISD--VRPLSSLNNLTKLN 231
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
L Q+SD + + + SL L+L N+I+D + L LTNL +L LD I + +
Sbjct: 232 LMSNQISD--IKPIASLNSLNSLDLDKNQISD--IEALSNLTNLTTLGLDRNQIIN--IK 285
Query: 295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 354
L+ L L+ L L Q+ S ++ LS LTNL + L I D ++ L L+ L++LN
Sbjct: 286 PLSNLTKLRWLFLRQNQI--SDIKPLSSLTNLRWLELKSNKIRD--VKPLTNLAKLRNLN 341
Query: 355 LDARQITDT-GLAALTSLTGL 374
L + QIT+ LA LT+L
Sbjct: 342 LSSNQITNVQSLANLTNLVNF 362
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 76/209 (36%), Positives = 118/209 (56%), Gaps = 16/209 (7%)
Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
SD+KPLSGLTNL ++ + +K++D + L L LT LN+ G ++ + L++L +L
Sbjct: 84 SDLKPLSGLTNLTNIDLWGNKISD--VKPLVNLTNLTNLNIGGNKISD--VKPLASLTNL 139
Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
L+L ++SD + + +L L++ N+I+D + L+ L NL L + S I D
Sbjct: 140 TNLDLGGNKISD--VTPLASLTNLIRLDVYSNQISD--INSLENLNNLTFLRVGSNRIVD 195
Query: 291 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 350
+ NL L L + Q+ S +R LS L NL +NL ISD ++ +A L+SL
Sbjct: 196 --VKQFANFTNLTELWLEENQI--SDVRPLSSLNNLTKLNLMSNQISD--IKPIASLNSL 249
Query: 351 KSLNLDARQITDTGLAALTSLTGLTHLDL 379
SL+LD QI+D + AL++LT LT L L
Sbjct: 250 NSLDLDKNQISD--IEALSNLTNLTTLGL 276
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 86/284 (30%), Positives = 137/284 (48%), Gaps = 47/284 (16%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++DL G+ ++D + L +NL LD + QISD + L NL +L+F R
Sbjct: 137 TNLTNLDLGGNKISD--VTPLASLTNLIRLDV-YSNQISD-----INSLENLNNLTFLRV 188
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+ +K FA NL +L LE N I SD++PL
Sbjct: 189 GSNRIVDVKQFANFTNLTELWLEE-------------------------NQI--SDVRPL 221
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
S L NL L + ++++D I + L L L+L+ ++ +++LS L +L L L+
Sbjct: 222 SSLNNLTKLNLMSNQISD--IKPIASLNSLNSLDLDKNQISD--IEALSNLTNLTTLGLD 277
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
R Q+ + + S + L+ L L N+I+D + L LTNL L L S I D + L
Sbjct: 278 RNQIIN--IKPLSNLTKLRWLFLRQNQISD--IKPLSSLTNLRWLELKSNKIRD--VKPL 331
Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 340
T L L+ L LS Q+ + ++ L+ LTNL + N+ I+ S
Sbjct: 332 TNLAKLRNLNLSSNQI--TNVQSLANLTNLVNFNVEENPINTKS 373
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 85/170 (50%), Gaps = 15/170 (8%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
QISD ++ + L++L SL +N ++A + L NL L L+R ++N+K
Sbjct: 236 QISD--IKPIASLNSLNSLDLDKN---QISDIEALSNLTNLTTLGLDR-----NQIINIK 285
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
L L L + SD+KPLS LTNL+ L++ +K+ D + L L KL LNL
Sbjct: 286 PLSNLTKLRWLFLRQNQISDIKPLSSLTNLRWLELKSNKIRD--VKPLTNLAKLRNLNLS 343
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE-KFSKIGSLKVLNLGF 261
+T + SL+ L +L N+ ++ C + +K GS K+ + F
Sbjct: 344 SNQITN--VQSLANLTNLVNFNVEENPINTKSCPGRSTKCGSTKLKHRTF 391
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 70/122 (57%), Gaps = 8/122 (6%)
Query: 265 TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT 324
T +C + L++L L L + I D L L+GL NL ++L ++ S ++ L LT
Sbjct: 60 TQDCHQANRKLSSLTELRLLTKQISD--LKPLSGLTNLTNIDLWGNKI--SDVKPLVNLT 115
Query: 325 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 384
NL ++N+ ISD ++ LA L++L +L+L +I+D + L SLT L LD++ +I
Sbjct: 116 NLTNLNIGGNKISD--VKPLASLTNLTNLDLGGNKISD--VTPLASLTNLIRLDVYSNQI 171
Query: 385 TD 386
+D
Sbjct: 172 SD 173
>gi|167861888|gb|ACA05643.1| InlA [Listeria monocytogenes]
gi|194326163|emb|CAQ77240.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 115/358 (32%), Positives = 172/358 (48%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNY 424
>gi|47096455|ref|ZP_00234048.1| internalin A precursor [Listeria monocytogenes str. 1/2a F6854]
gi|254913677|ref|ZP_05263689.1| internalin A [Listeria monocytogenes J2818]
gi|254937992|ref|ZP_05269689.1| internalin A [Listeria monocytogenes F6900]
gi|386046091|ref|YP_005964423.1| internalin A [Listeria monocytogenes J0161]
gi|47015176|gb|EAL06116.1| internalin A precursor [Listeria monocytogenes str. 1/2a F6854]
gi|194239410|emb|CAQ76845.1| internalin A [Listeria monocytogenes]
gi|223006792|gb|ACM69353.1| internalin A [Listeria monocytogenes]
gi|223006794|gb|ACM69354.1| internalin A [Listeria monocytogenes]
gi|258610604|gb|EEW23212.1| internalin A [Listeria monocytogenes F6900]
gi|293591690|gb|EFG00025.1| internalin A [Listeria monocytogenes J2818]
gi|298359952|gb|ADI77555.1| internalin A [Listeria monocytogenes]
gi|298359956|gb|ADI77557.1| internalin A [Listeria monocytogenes]
gi|298359986|gb|ADI77572.1| internalin A [Listeria monocytogenes]
gi|298360086|gb|ADI77622.1| internalin A [Listeria monocytogenes]
gi|298360130|gb|ADI77644.1| internalin A [Listeria monocytogenes]
gi|298360206|gb|ADI77682.1| internalin A [Listeria monocytogenes]
gi|298360572|gb|ADI77865.1| internalin A [Listeria monocytogenes]
gi|298360644|gb|ADI77901.1| internalin A [Listeria monocytogenes]
gi|345533082|gb|AEO02523.1| internalin A [Listeria monocytogenes J0161]
gi|443428774|gb|AGC92186.1| internalin A [Listeria monocytogenes]
gi|443428776|gb|AGC92187.1| internalin A [Listeria monocytogenes]
gi|443428868|gb|AGC92233.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 105/329 (31%), Positives = 166/329 (50%), Gaps = 39/329 (11%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
L GL L LEL++ Q+ + +S L NL + L F ISD + ++ L+ L+ L
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRL 366
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGA 382
+++D ++SL LT+++ A
Sbjct: 367 FFYNNKVSD-----VSSLANLTNINWLSA 390
>gi|340052077|emb|CBY84390.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 115/358 (32%), Positives = 172/358 (48%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNY 424
>gi|326505700|dbj|BAJ95521.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 661
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 117/403 (29%), Positives = 180/403 (44%), Gaps = 67/403 (16%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGS-DVTDSGLIHLKDCSNLQSLDFNFC 91
++ +CL + GV + ++ + + L +VDLS D L S L+ L+ C
Sbjct: 106 VRQVCLARASGVGWRGLEALVAACPRLEAVDLSHCVGAGDREAAALAAASGLRELNLEKC 165
Query: 92 IQISDGGLEHLR-GLSNLTSLSFRRNNAITAQGMKAFAGLI-NLVKLDLERCTRIHGGLV 149
+ ++D GL + G L +LSF+ I+ G+ +L LD+ + L
Sbjct: 166 LGVTDMGLAKVAVGCPRLETLSFKWCREISDIGVDLLVKKCRDLRSLDISYLKVSNESLR 225
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYL----KGL 203
++ L KLE L + C+CI D ++ LS G +L+S+ +S C+ VT G+A L L
Sbjct: 226 SISTLEKLEELAMVACSCIDDEGLELLSRGSNSLQSVDVSRCNHVTSQGLASLIDGHSFL 285
Query: 204 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE 263
QKL AA DSL +G F L + +L VL L E
Sbjct: 286 QKL----------NAA--DSLHEIGQNFLSKL------------VTLKATLTVLRLDGFE 321
Query: 264 ITDECLVHL-KGLTNLESLNLDSC-GIGDEGLVNLTGLCN-------------------- 301
++ L + +G TNL + L C G+ DEG+ +L C+
Sbjct: 322 VSSSLLSAIGEGCTNLVEIGLSKCNGVTDEGISSLVARCSYLRKIDLTCCNLVTNDSLDS 381
Query: 302 -------LKCLEL-SDTQVGSSGLRHL-SGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
L+CL L S + + GL + S NL+ I+L+ G++D +L LA S L
Sbjct: 382 IADNCKMLECLRLESCSSINEKGLERIASCCPNLKEIDLTDCGVNDEALHHLAKCSELLI 441
Query: 353 LNLD-ARQITDTGLAALTSLTG-LTHLDLFG-ARITDSGAAYL 392
L L + I+D GL ++S G L LDL+ + ITD G A L
Sbjct: 442 LKLGLSSSISDKGLGFISSKCGKLIELDLYRCSSITDDGLAAL 484
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 79/174 (45%), Gaps = 26/174 (14%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR 103
+N+K ++ IAS +L +DL+ V D L HL CS L L ISD GL +
Sbjct: 400 INEKGLERIASCCPNLKEIDLTDCGVNDEALHHLAKCSELLILKLGLSSSISDKGLGFIS 459
Query: 104 G-LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
L L R ++IT G+ A A G K++ LN+
Sbjct: 460 SKCGKLIELDLYRCSSITDDGLAALAN-----------------------GCKKIKLLNL 496
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISC-SKVTDSGI-AYLKGLQKLTLLNLEGC 214
+CN ITDS + L L L +L++ C ++T GI + + G + L L+L+ C
Sbjct: 497 CYCNKITDSGLSHLGALEELTNLELRCLVRITGIGISSVVIGCKSLVELDLKRC 550
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 108/375 (28%), Positives = 167/375 (44%), Gaps = 67/375 (17%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL- 102
++D +D++ + L S+D+S V++ L + L+ L C I D GLE L
Sbjct: 194 ISDIGVDLLVKKCRDLRSLDISYLKVSNESLRSISTLEKLEELAMVACSCIDDEGLELLS 253
Query: 103 RGLSNLTSLSFRRNNAITAQGM------KAFAGLINLVKLDLERCTRIHGGLVNLKG--- 153
RG ++L S+ R N +T+QG+ +F +N E LV LK
Sbjct: 254 RGSNSLQSVDVSRCNHVTSQGLASLIDGHSFLQKLNAADSLHEIGQNFLSKLVTLKATLT 313
Query: 154 LMKLESLNIKWCNCITDSDMKPL-SGLTNLKSLQIS-CSKVTDSGI-------AYLKGLQ 204
+++L+ ++ S + + G TNL + +S C+ VTD GI +YL+ +
Sbjct: 314 VLRLDGFE------VSSSLLSAIGEGCTNLVEIGLSKCNGVTDEGISSLVARCSYLRKID 367
Query: 205 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 264
LT NL VT LDS++ + C++ + C + S+ G I
Sbjct: 368 -LTCCNL----VTNDSLDSIA----------DNCKMLE--CLRLESCSSIN--EKGLERI 408
Query: 265 TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT 324
C NL+ ++L CG+ DE L +L KC EL ++G S GL
Sbjct: 409 ASCC-------PNLKEIDLTDCGVNDEALHHLA-----KCSELLILKLGLSSSISDKGLG 456
Query: 325 NLES-----INLSF---TGISDGSLRKLA-GLSSLKSLNL-DARQITDTGLAALTSLTGL 374
+ S I L + I+D L LA G +K LNL +ITD+GL+ L +L L
Sbjct: 457 FISSKCGKLIELDLYRCSSITDDGLAALANGCKKIKLLNLCYCNKITDSGLSHLGALEEL 516
Query: 375 THLDLFG-ARITDSG 388
T+L+L RIT G
Sbjct: 517 TNLELRCLVRITGIG 531
>gi|298360234|gb|ADI77696.1| internalin A [Listeria monocytogenes]
gi|298360500|gb|ADI77829.1| internalin A [Listeria monocytogenes]
gi|298360708|gb|ADI77933.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 105/329 (31%), Positives = 167/329 (50%), Gaps = 39/329 (11%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
+L GL L LEL++ Q+ + +S L NL + L F ISD + ++ L+ L+ L
Sbjct: 311 SSLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNDISD--ISPVSSLTKLQRL 366
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGA 382
+++D ++SL LT+++ A
Sbjct: 367 FFYNNKVSD-----VSSLANLTNINWLSA 390
>gi|298360230|gb|ADI77694.1| internalin A [Listeria monocytogenes]
gi|298360588|gb|ADI77873.1| internalin A [Listeria monocytogenes]
gi|298360606|gb|ADI77882.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 115/358 (32%), Positives = 172/358 (48%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNY 424
>gi|404412528|ref|YP_006698115.1| internalin A [Listeria monocytogenes SLCC7179]
gi|298360000|gb|ADI77579.1| internalin A [Listeria monocytogenes]
gi|298360676|gb|ADI77917.1| internalin A [Listeria monocytogenes]
gi|404238227|emb|CBY59628.1| internalin A (LPXTG motif) [Listeria monocytogenes SLCC7179]
gi|443428842|gb|AGC92220.1| internalin A [Listeria monocytogenes]
gi|443428848|gb|AGC92223.1| internalin A [Listeria monocytogenes]
gi|443428858|gb|AGC92228.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 115/358 (32%), Positives = 172/358 (48%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNY 424
>gi|38154342|gb|AAR12158.1| internalin A [Listeria monocytogenes]
Length = 728
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 115/358 (32%), Positives = 172/358 (48%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 42 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 95
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 96 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 147
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 148 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 200
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 201 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 254
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 255 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 312
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 313 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNY 368
>gi|371942100|gb|AEX60862.1| internaline [Listeria monocytogenes]
Length = 789
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 105/329 (31%), Positives = 166/329 (50%), Gaps = 39/329 (11%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
L GL L LEL++ Q+ + +S L NL + L F ISD + ++ L+ L+ L
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRL 366
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGA 382
+++D ++SL LT+++ A
Sbjct: 367 FFYNNKVSD-----VSSLANLTNINWLSA 390
>gi|281210637|gb|EFA84803.1| hypothetical protein PPL_01796 [Polysphondylium pallidum PN500]
Length = 739
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 94/338 (27%), Positives = 154/338 (45%), Gaps = 32/338 (9%)
Query: 82 NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC 141
+LQ + C +D G+E+ + + +LTSL + A+T +K+ ++ L +L L
Sbjct: 365 HLQKVSLVACFGFTDLGMENFKRMEHLTSLILT-DCAVTNVSVKSLKQMVKLEELSLRNT 423
Query: 142 TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLK 201
GL L L++L+ L++ CN + + T L++L +S + VT+ I L
Sbjct: 424 KITDSGLTLLSSLVELKFLDLSACNITDEGITFAIPCFTKLETLNLSATSVTEKAIQKLT 483
Query: 202 GLQKLTLLNLEGCPVTA-ACLDSLSALG-SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 259
L L L L CP+ L ++ G +L L++ ++ G ++ +L VL L
Sbjct: 484 KL-PLVSLYLSNCPMIGNQSLFFITLFGKTLKLLDIFGTKIGGAGFVNLQRLPNLTVLKL 542
Query: 260 -GFNEITDECLVHLKGLTNLESLNL-DSCGIGDEGLVN-LTGLC---------------- 300
G + ++D + HL L N+ L+L D I +N L LC
Sbjct: 543 PGRDSLSDAHISHLNALQNVRRLDLSDYINITTIAPLNPLRYLCELSLSNTKISDDSIDS 602
Query: 301 -----NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355
NL L L T+V G+ L L+ L +++L TGI L L+ L +L SLN+
Sbjct: 603 IIGCSNLVILNLDRTRVRDIGVSKLISLS-LHTLSLMATGIRGDCLTTLSQLITLTSLNI 661
Query: 356 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
+ I D + L L LT++DL R T + A L+
Sbjct: 662 SSNDIQDAKVLPLLDLPNLTYIDL---RNTQAFTASLK 696
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 72/257 (28%), Positives = 117/257 (45%), Gaps = 31/257 (12%)
Query: 153 GLMKLESLNIKWCNCITDSDMKP--LSGLTNLKSLQ-ISCSKVTDSGIAYLKGLQKLTLL 209
G K+E LN+ + + I +D LS + +L+ + ++C TD G+ K ++ LT L
Sbjct: 335 GNAKIEELNLNYQHLIVSNDFLQNCLSRMYHLQKVSLVACFGFTDLGMENFKRMEHLTSL 394
Query: 210 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
L C VT + SL + L L+L +++D G S + LK L+L ITDE +
Sbjct: 395 ILTDCAVTNVSVKSLKQMVKLEELSLRNTKITDSGLTLLSSLVELKFLDLSACNITDEGI 454
Query: 270 VH-LKGLTNLESLNLDSCGIGDEGLVNLTGLC-------------------------NLK 303
+ T LE+LNL + + ++ + LT L LK
Sbjct: 455 TFAIPCFTKLETLNLSATSVTEKAIQKLTKLPLVSLYLSNCPMIGNQSLFFITLFGKTLK 514
Query: 304 CLELSDTQVGSSGLRHLSGLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L++ T++G +G +L L NL + L +SD + L L +++ L+L + I
Sbjct: 515 LLDIFGTKIGGAGFVNLQRLPNLTVLKLPGRDSLSDAHISHLNALQNVRRLDL-SDYINI 573
Query: 363 TGLAALTSLTGLTHLDL 379
T +A L L L L L
Sbjct: 574 TTIAPLNPLRYLCELSL 590
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 82/291 (28%), Positives = 134/291 (46%), Gaps = 32/291 (10%)
Query: 55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEH-LRGLSNLTSLSF 113
Q L + L + +TDSGL L L+ LD + C I+D G+ + + L +L+
Sbjct: 411 QMVKLEELSLRNTKITDSGLTLLSSLVELKFLDLSAC-NITDEGITFAIPCFTKLETLNL 469
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERC-------------------------TRIHG-G 147
++T + ++ L LV L L C T+I G G
Sbjct: 470 SAT-SVTEKAIQKLTKL-PLVSLYLSNCPMIGNQSLFFITLFGKTLKLLDIFGTKIGGAG 527
Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 207
VNL+ L L L + + ++D+ + L+ L N++ L +S + + IA L L+ L
Sbjct: 528 FVNLQRLPNLTVLKLPGRDSLSDAHISHLNALQNVRRLDLS-DYINITTIAPLNPLRYLC 586
Query: 208 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 267
L+L ++ +DS+ +L LNL+R ++ D G K + SL L+L I +
Sbjct: 587 ELSLSNTKISDDSIDSIIGCSNLVILNLDRTRVRDIGVSKLISL-SLHTLSLMATGIRGD 645
Query: 268 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 318
CL L L L SLN+ S I D ++ L L NL ++L +TQ ++ L+
Sbjct: 646 CLTTLSQLITLTSLNISSNDIQDAKVLPLLDLPNLTYIDLRNTQAFTASLK 696
Score = 38.5 bits (88), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 94/233 (40%), Gaps = 42/233 (18%)
Query: 20 LTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKD 79
+TE +++ L L L P + ++ + I G +L +D+ G+ + +G ++L+
Sbjct: 474 VTEKAIQKLTKLPLVSLYLSNCPMIGNQSLFFITLFGKTLKLLDIFGTKIGGAGFVNLQR 533
Query: 80 CSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR----------------------RNN 117
NL L +SD + HL L N+ L N
Sbjct: 534 LPNLTVLKLPGRDSLSDAHISHLNALQNVRRLDLSDYINITTIAPLNPLRYLCELSLSNT 593
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC---------NCI 168
I+ + + G NLV L+L+R TR+ G+ KL SL++ +C+
Sbjct: 594 KISDDSIDSIIGCSNLVILNLDR-TRVRDI-----GVSKLISLSLHTLSLMATGIRGDCL 647
Query: 169 TDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 221
T LS L L SL IS + + D+ + L L LT ++L A L
Sbjct: 648 TT-----LSQLITLTSLNISSNDIQDAKVLPLLDLPNLTYIDLRNTQAFTASL 695
>gi|386052707|ref|YP_005970265.1| internalin A [Listeria monocytogenes Finland 1998]
gi|130774801|gb|ABO32414.1| InlA [Listeria monocytogenes]
gi|130774805|gb|ABO32415.1| InlA [Listeria monocytogenes]
gi|130774807|gb|ABO32416.1| InlA [Listeria monocytogenes]
gi|150371724|dbj|BAF65677.1| internalin A [Listeria monocytogenes]
gi|150371780|dbj|BAF65679.1| internalin A [Listeria monocytogenes]
gi|150371784|dbj|BAF65681.1| internalin A [Listeria monocytogenes]
gi|150371788|dbj|BAF65683.1| internalin A [Listeria monocytogenes]
gi|150371790|dbj|BAF65684.1| internalin A [Listeria monocytogenes]
gi|150371792|dbj|BAF65685.1| internalin A [Listeria monocytogenes]
gi|150371798|dbj|BAF65688.1| internalin A [Listeria monocytogenes]
gi|150371802|dbj|BAF65690.1| internalin A [Listeria monocytogenes]
gi|150371808|dbj|BAF65693.1| internalin A [Listeria monocytogenes]
gi|150371814|dbj|BAF65696.1| internalin A [Listeria monocytogenes]
gi|150371818|dbj|BAF65698.1| internalin A [Listeria monocytogenes]
gi|150371824|dbj|BAF65701.1| internalin A [Listeria monocytogenes]
gi|150371830|dbj|BAF65704.1| internalin A [Listeria monocytogenes]
gi|150371832|dbj|BAF65705.1| internalin A [Listeria monocytogenes]
gi|150371834|dbj|BAF65706.1| internalin A [Listeria monocytogenes]
gi|150371836|dbj|BAF65707.1| internalin A [Listeria monocytogenes]
gi|150371838|dbj|BAF65708.1| internalin A [Listeria monocytogenes]
gi|150371844|dbj|BAF65711.1| internalin A [Listeria monocytogenes]
gi|150371848|dbj|BAF65713.1| internalin A [Listeria monocytogenes]
gi|150371850|dbj|BAF65714.1| internalin A [Listeria monocytogenes]
gi|150371854|dbj|BAF65716.1| internalin A [Listeria monocytogenes]
gi|150371864|dbj|BAF65721.1| internalin A [Listeria monocytogenes]
gi|150371870|dbj|BAF65724.1| internalin A [Listeria monocytogenes]
gi|290350828|dbj|BAI78335.1| internalin A [Listeria monocytogenes]
gi|290350832|dbj|BAI78337.1| internalin A [Listeria monocytogenes]
gi|290350834|dbj|BAI78338.1| internalin A [Listeria monocytogenes]
gi|290350840|dbj|BAI78341.1| internalin A [Listeria monocytogenes]
gi|298359802|gb|ADI77480.1| internalin A [Listeria monocytogenes]
gi|298359828|gb|ADI77493.1| internalin A [Listeria monocytogenes]
gi|298359876|gb|ADI77517.1| internalin A [Listeria monocytogenes]
gi|298359878|gb|ADI77518.1| internalin A [Listeria monocytogenes]
gi|298359918|gb|ADI77538.1| internalin A [Listeria monocytogenes]
gi|298359964|gb|ADI77561.1| internalin A [Listeria monocytogenes]
gi|298359966|gb|ADI77562.1| internalin A [Listeria monocytogenes]
gi|298360014|gb|ADI77586.1| internalin A [Listeria monocytogenes]
gi|298360038|gb|ADI77598.1| internalin A [Listeria monocytogenes]
gi|298360084|gb|ADI77621.1| internalin A [Listeria monocytogenes]
gi|298360104|gb|ADI77631.1| internalin A [Listeria monocytogenes]
gi|298360134|gb|ADI77646.1| internalin A [Listeria monocytogenes]
gi|298360170|gb|ADI77664.1| internalin A [Listeria monocytogenes]
gi|298360178|gb|ADI77668.1| internalin A [Listeria monocytogenes]
gi|298360214|gb|ADI77686.1| internalin A [Listeria monocytogenes]
gi|298360242|gb|ADI77700.1| internalin A [Listeria monocytogenes]
gi|298360244|gb|ADI77701.1| internalin A [Listeria monocytogenes]
gi|298360254|gb|ADI77706.1| internalin A [Listeria monocytogenes]
gi|298360278|gb|ADI77718.1| internalin A [Listeria monocytogenes]
gi|298360310|gb|ADI77734.1| internalin A [Listeria monocytogenes]
gi|298360334|gb|ADI77746.1| internalin A [Listeria monocytogenes]
gi|298360338|gb|ADI77748.1| internalin A [Listeria monocytogenes]
gi|298360376|gb|ADI77767.1| internalin A [Listeria monocytogenes]
gi|298360384|gb|ADI77771.1| internalin A [Listeria monocytogenes]
gi|298360436|gb|ADI77797.1| internalin A [Listeria monocytogenes]
gi|298360532|gb|ADI77845.1| internalin A [Listeria monocytogenes]
gi|298360542|gb|ADI77850.1| internalin A [Listeria monocytogenes]
gi|298360552|gb|ADI77855.1| internalin A [Listeria monocytogenes]
gi|298360564|gb|ADI77861.1| internalin A [Listeria monocytogenes]
gi|298360568|gb|ADI77863.1| internalin A [Listeria monocytogenes]
gi|298360596|gb|ADI77877.1| internalin A [Listeria monocytogenes]
gi|298360666|gb|ADI77912.1| internalin A [Listeria monocytogenes]
gi|298360710|gb|ADI77934.1| internalin A [Listeria monocytogenes]
gi|346645358|gb|AEO37983.1| internalin A [Listeria monocytogenes Finland 1998]
gi|443428778|gb|AGC92188.1| internalin A [Listeria monocytogenes]
gi|443428804|gb|AGC92201.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 105/329 (31%), Positives = 166/329 (50%), Gaps = 39/329 (11%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
L GL L LEL++ Q+ + +S L NL + L F ISD + ++ L+ L+ L
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRL 366
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGA 382
+++D ++SL LT+++ A
Sbjct: 367 FFYNNKVSD-----VSSLANLTNINWLSA 390
>gi|290350830|dbj|BAI78336.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 115/358 (32%), Positives = 172/358 (48%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LTPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNY 424
>gi|223698901|gb|ACN19174.1| internalin A [Listeria monocytogenes]
Length = 715
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 105/329 (31%), Positives = 166/329 (50%), Gaps = 39/329 (11%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 13 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 66
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 67 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 118
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 119 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 171
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 172 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 225
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
L GL L LEL++ Q+ + +S L NL + L F ISD + ++ L+ L+ L
Sbjct: 226 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRL 281
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGA 382
+++D ++SL LT+++ A
Sbjct: 282 FFYNNKVSD-----VSSLANLTNINWLSA 305
>gi|194239392|emb|CAQ76836.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 105/329 (31%), Positives = 166/329 (50%), Gaps = 39/329 (11%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
L GL L LEL++ Q+ + +S L NL + L F ISD + ++ L+ L+ L
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRL 366
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGA 382
+++D ++SL LT+++ A
Sbjct: 367 FFYNNKVSD-----VSSLANLTNINWLSA 390
>gi|371942110|gb|AEX60867.1| internaline [Listeria monocytogenes]
gi|371942112|gb|AEX60868.1| internaline [Listeria monocytogenes]
Length = 789
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 115/358 (32%), Positives = 172/358 (48%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNY 424
>gi|313485072|gb|ADR53007.1| InlA [Listeria monocytogenes]
Length = 800
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 105/329 (31%), Positives = 166/329 (50%), Gaps = 39/329 (11%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
L GL L LEL++ Q+ + +S L NL + L F ISD + ++ L+ L+ L
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRL 366
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGA 382
+++D ++SL LT+++ A
Sbjct: 367 FFYNNKVSD-----VSSLANLTNINWLSA 390
>gi|130774819|gb|ABO32422.1| InlA [Listeria monocytogenes]
gi|167861894|gb|ACA05646.1| InlA [Listeria monocytogenes]
gi|167861946|gb|ACA05672.1| InlA [Listeria monocytogenes]
gi|167861948|gb|ACA05673.1| InlA [Listeria monocytogenes]
gi|194239402|emb|CAQ76841.1| internalin A [Listeria monocytogenes]
gi|298360052|gb|ADI77605.1| internalin A [Listeria monocytogenes]
gi|298360164|gb|ADI77661.1| internalin A [Listeria monocytogenes]
gi|298360372|gb|ADI77765.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 105/329 (31%), Positives = 166/329 (50%), Gaps = 39/329 (11%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
L GL L LEL++ Q+ + +S L NL + L F ISD + ++ L+ L+ L
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRL 366
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGA 382
+++D ++SL LT+++ A
Sbjct: 367 FFYNNKVSD-----VSSLANLTNINWLSA 390
>gi|223698868|gb|ACN19152.1| internalin A [Listeria monocytogenes]
gi|223698898|gb|ACN19172.1| internalin A [Listeria monocytogenes]
Length = 715
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 105/329 (31%), Positives = 166/329 (50%), Gaps = 39/329 (11%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 13 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 66
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 67 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 118
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 119 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 171
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 172 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 225
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
L GL L LEL++ Q+ + +S L NL + L F ISD + ++ L+ L+ L
Sbjct: 226 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRL 281
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGA 382
+++D ++SL LT+++ A
Sbjct: 282 FFYNNKVSD-----VSSLANLTNINWLSA 305
>gi|294358395|gb|ADE73850.1| InlA [Listeria monocytogenes]
Length = 800
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 105/329 (31%), Positives = 166/329 (50%), Gaps = 39/329 (11%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
L GL L LEL++ Q+ + +S L NL + L F ISD + ++ L+ L+ L
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRL 366
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGA 382
+++D ++SL LT+++ A
Sbjct: 367 FFYNNKVSD-----VSSLANLTNINWLSA 390
>gi|150371858|dbj|BAF65718.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 115/358 (32%), Positives = 172/358 (48%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL+ L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLISLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LGSLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNY 424
>gi|130774795|gb|ABO32412.1| InlA [Listeria monocytogenes]
gi|150371796|dbj|BAF65687.1| internalin A [Listeria monocytogenes]
gi|150371806|dbj|BAF65692.1| internalin A [Listeria monocytogenes]
gi|150371822|dbj|BAF65700.1| internalin A [Listeria monocytogenes]
gi|194326149|emb|CAQ77233.1| internalin A [Listeria monocytogenes]
gi|298359930|gb|ADI77544.1| internalin A [Listeria monocytogenes]
gi|298360322|gb|ADI77740.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 105/329 (31%), Positives = 166/329 (50%), Gaps = 39/329 (11%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
L GL L LEL++ Q+ + +S L NL + L F ISD + ++ L+ L+ L
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRL 366
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGA 382
+++D ++SL LT+++ A
Sbjct: 367 FFYNNKVSD-----VSSLANLTNINWLSA 390
>gi|22347554|gb|AAM95922.1| internalin A precursor [Listeria monocytogenes]
Length = 741
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 115/358 (32%), Positives = 172/358 (48%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 42 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 95
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 96 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 147
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 148 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 200
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 201 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 254
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 255 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 312
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 313 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNY 368
>gi|371942116|gb|AEX60870.1| internaline [Listeria monocytogenes]
Length = 789
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 105/329 (31%), Positives = 166/329 (50%), Gaps = 39/329 (11%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
L GL L LEL++ Q+ + +S L NL + L F ISD + ++ L+ L+ L
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRL 366
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGA 382
+++D ++SL LT+++ A
Sbjct: 367 FFYNNKVSD-----VSSLANLTNINWLSA 390
>gi|223698658|gb|ACN19012.1| internalin A [Listeria monocytogenes]
Length = 715
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 105/329 (31%), Positives = 166/329 (50%), Gaps = 39/329 (11%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 13 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 66
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 67 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 118
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 119 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 171
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 172 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 225
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
L GL L LEL++ Q+ + +S L NL + L F ISD + ++ L+ L+ L
Sbjct: 226 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRL 281
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGA 382
+++D ++SL LT+++ A
Sbjct: 282 FFYNNKVSD-----VSSLANLTNINWLSA 305
>gi|194326157|emb|CAQ77237.1| internalin A [Listeria monocytogenes]
gi|290350820|dbj|BAI78331.1| internalin A [Listeria monocytogenes]
gi|290350836|dbj|BAI78339.1| internalin A [Listeria monocytogenes]
gi|298360124|gb|ADI77641.1| internalin A [Listeria monocytogenes]
gi|298360394|gb|ADI77776.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 105/329 (31%), Positives = 166/329 (50%), Gaps = 39/329 (11%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
L GL L LEL++ Q+ + +S L NL + L F ISD + ++ L+ L+ L
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRL 366
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGA 382
+++D ++SL LT+++ A
Sbjct: 367 FFYNNKVSD-----VSSLANLTNINWLSA 390
>gi|22347556|gb|AAM95923.1| internalin A precursor [Listeria monocytogenes]
Length = 744
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 115/358 (32%), Positives = 172/358 (48%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 42 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 95
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 96 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 147
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 148 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 200
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 201 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 254
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 255 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 312
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 313 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNY 368
>gi|223698976|gb|ACN19224.1| internalin A [Listeria monocytogenes]
Length = 715
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 115/358 (32%), Positives = 172/358 (48%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 13 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 66
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 67 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 118
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 119 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 171
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 172 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 225
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 226 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 283
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 284 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNY 339
>gi|72385469|ref|XP_846402.1| leucine-rich repeat protein (LRRP) [Trypanosoma brucei TREU927]
gi|9366571|emb|CAB95333.1| leucine-rich repeat protein (LRRP), putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
Length = 1448
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 114/446 (25%), Positives = 183/446 (41%), Gaps = 108/446 (24%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC 91
AL +L L +N W + Q L LS + +TD + H C NL +LD +FC
Sbjct: 610 ALNELNLSNCIRINAGWEAIEKLQ--QLHVAILSNTHITDRDISHFSKCKNLVTLDLSFC 667
Query: 92 IQISD-------GGLEHL---------RGLSNLTSLSFRRNNAITAQGMKAFAGLI---- 131
++ D LE L +GLS L L R + +G++ +I
Sbjct: 668 NKLLDVTTLSNITTLEELNLDSCSNIRKGLSVLGELP--RLCVLNIKGVQLEDSVIGSLG 725
Query: 132 ---NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
+ V+L LE C + GG+ L L+ LE LN+ +C+ +T S M L L L+ L +
Sbjct: 726 NGNSFVRLSLENC-KGFGGVTPLSNLVTLEELNLHYCDKVT-SGMGTLGRLLQLRVLDLG 783
Query: 189 CSKVTD------------------------SGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
++V D + I+ + L L LN++ C + +
Sbjct: 784 RTQVDDNSLENICTCSSPLVSLNLSHCKKITSISAIASLTALEELNIDNCCNVTSGWNVF 843
Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNL 283
L L L+ +++D+ + S+ SL LNL F +ITD + L +T LE LNL
Sbjct: 844 GTLHQLRVATLSNTRINDENIQHVSECKSLNTLNLAFCKDITD--VTALSTITMLEELNL 901
Query: 284 D------------------------SCGIGDE-----------------------GLVNL 296
D C +GD G +++
Sbjct: 902 DCCHNIRKGIETLGKLPKVRILSMKECYMGDSDAQQCSILGNSKSLVKLNLERSMGFISV 961
Query: 297 TGLCNLKCLE--LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 354
L N+ LE + D+ G + S L L +NL +T I+D + ++ SL+SLN
Sbjct: 962 KALSNIATLEELVLDSVCGIYDVLSFSCLPRLRVLNLKYTDINDDVTKNISESKSLQSLN 1021
Query: 355 L-DARQITDTGLAALTSLTGLTHLDL 379
L + +TD ++ L+SL+ L L++
Sbjct: 1022 LSHCKWVTD--ISVLSSLSTLEELNV 1045
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 83/271 (30%), Positives = 135/271 (49%), Gaps = 18/271 (6%)
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
++A A ++ L KL L CT I G+ L L +L+ L++ N +S ++ L +
Sbjct: 531 VEALANILTLEKLSLHGCTGIDAGIGCLGNLPQLKMLDLSGTNTDNES-LRSLCLSQTVV 589
Query: 184 SLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
SL +S C K+T+ ++++ L+ L LNL C A +++ L L L+ ++D
Sbjct: 590 SLNLSHCWKMTN--VSHISSLEALNELNLSNCIRINAGWEAIEKLQQLHVAILSNTHITD 647
Query: 243 DGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLV---NLTG 298
FSK +L L+L F N++ D + L +T LE LNLDSC +GL L
Sbjct: 648 RDISHFSKCKNLVTLDLSFCNKLLD--VTTLSNITTLEELNLDSCSNIRKGLSVLGELPR 705
Query: 299 LC--NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
LC N+K ++L D+ +GS G + +LE+ F G++ L+ L +L+ LNL
Sbjct: 706 LCVLNIKGVQLEDSVIGSLGNGNSFVRLSLENCK-GFGGVT-----PLSNLVTLEELNLH 759
Query: 357 ARQITDTGLAALTSLTGLTHLDLFGARITDS 387
+G+ L L L LDL ++ D+
Sbjct: 760 YCDKVTSGMGTLGRLLQLRVLDLGRTQVDDN 790
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 98/375 (26%), Positives = 163/375 (43%), Gaps = 58/375 (15%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISD-------GGLEHL---------RGL 105
+DLSG V D+ L L DC +L+ L+ ++CIQ++D +E L RG+
Sbjct: 354 LDLSGVPVEDNCLKDLCDCGSLERLNISYCIQLTDINPLSNATAIEELNLNGCRRITRGI 413
Query: 106 SNLTSLSFRR-----NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 160
+ +L R + ++ + + LVK+ L+ C G + L ++ LE L
Sbjct: 414 GVVWALPRLRILHMKDVHLSEPSLDSVGTGGLLVKVSLDNCAGF-GDMTLLSSIVTLEEL 472
Query: 161 NIKWCNCITDS----DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
NI+ C I P + N+K + IS GI K L +LTL + G
Sbjct: 473 NIQKCADIISGVGCLGTLPYLRVLNVKEVHISSLDFI--GIGASKSLLQLTLESFTG--- 527
Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL------- 269
+ +++L+ + +L L+L+ C D G + LK+L+L +E L
Sbjct: 528 -LSNVEALANILTLEKLSLHGCTGIDAGIGCLGNLPQLKMLDLSGTNTDNESLRSLCLSQ 586
Query: 270 ----------------VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 313
H+ L L LNL +C + G + L L LS+T +
Sbjct: 587 TVVSLNLSHCWKMTNVSHISSLEALNELNLSNCIRINAGWEAIEKLQQLHVAILSNTHIT 646
Query: 314 SSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 372
+ H S NL +++LSF + D + L+ +++L+ LNLD+ GL+ L L
Sbjct: 647 DRDISHFSKCKNLVTLDLSFCNKLLD--VTTLSNITTLEELNLDSCSNIRKGLSVLGELP 704
Query: 373 GLTHLDLFGARITDS 387
L L++ G ++ DS
Sbjct: 705 RLCVLNIKGVQLEDS 719
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 89/343 (25%), Positives = 155/343 (45%), Gaps = 39/343 (11%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ ++L ++L+ +++ DS + + C L L + C ++D + L+ L L+
Sbjct: 276 SRLTNLKCLELNSTNIDDSCVEEISACVKLSKLSVSECNNVTDAT--PISQLAALEELNL 333
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
+N +G+ L+ L LDL L +L LE LNI +C I +D+
Sbjct: 334 --SNCHITKGIGTLGMLLRLRILDLSGVPVEDNCLKDLCDCGSLERLNISYC--IQLTDI 389
Query: 174 KPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
PLS T ++ L ++ C ++T GI + L +L +L+++ ++ LDS+ G L
Sbjct: 390 NPLSNATAIEELNLNGCRRIT-RGIGVVWALPRLRILHMKDVHLSEPSLDSVGTGGLLVK 448
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
++L+ C GF ++T L + LE LN+ C G
Sbjct: 449 VSLDNCA--------------------GFGDMT-----LLSSIVTLEELNIQKCADIISG 483
Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLK 351
+ L L L+ L + + + S + +L + L SFTG+S+ + LA + +L+
Sbjct: 484 VGCLGTLPYLRVLNVKEVHISSLDFIGIGASKSLLQLTLESFTGLSN--VEALANILTLE 541
Query: 352 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRS 394
L+L D G+ L +L L LDL G T++ LRS
Sbjct: 542 KLSLHGCTGIDAGIGCLGNLPQLKMLDLSG---TNTDNESLRS 581
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 92/349 (26%), Positives = 145/349 (41%), Gaps = 47/349 (13%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISD----------------------GGLEH 101
LS + + D + H+ +C +L +L+ FC I+D G+E
Sbjct: 854 LSNTRINDENIQHVSECKSLNTLNLAFCKDITDVTALSTITMLEELNLDCCHNIRKGIET 913
Query: 102 LRGLSNLTSLSFRR--NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 159
L L + LS + AQ +LVKL+LER G +++K L + +
Sbjct: 914 LGKLPKVRILSMKECYMGDSDAQQCSILGNSKSLVKLNLERSM----GFISVKALSNIAT 969
Query: 160 LNIKWCNCITDS-----DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 214
L + DS D+ S L L+ L + + + D + + L LNL C
Sbjct: 970 LE----ELVLDSVCGIYDVLSFSCLPRLRVLNLKYTDINDDVTKNISESKSLQSLNLSHC 1025
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 274
+ LS+L +L LN+N C G E K+ L+V L IT + + L
Sbjct: 1026 KWVTD-ISVLSSLSTLEELNVNFCNGIRKGWESLGKLPLLRVAILSDTNITAKDIACLSS 1084
Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE---LSDTQVGSSGLRHLSGLTNLESINL 331
L L C E L ++T + ++ LE + G GL L L+ L ++L
Sbjct: 1085 CKKLVKLQFFRC----EKLSDVTVVYEIQSLEELIVRKYSDGLKGLNALGTLSRLRFLHL 1140
Query: 332 SFTGISDGSLRKLAGLSSLKSLNLDAR-QITD-TGLAALTSLTGLTHLD 378
SD S+ + SL LN++ R ++TD T L+ +TSL L+ D
Sbjct: 1141 RNARGSDISVESIGTSKSLVRLNIETREELTDATPLSNITSLEELSLRD 1189
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 96/359 (26%), Positives = 152/359 (42%), Gaps = 61/359 (16%)
Query: 62 VDLSGSDVTDSGLIHLKDCSN-LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
+DL + V D+ L ++ CS+ L SL+ + C +I+ + + L+ L L+ +T
Sbjct: 780 LDLGRTQVDDNSLENICTCSSPLVSLNLSHCKKIT--SISAIASLTALEELNIDNCCNVT 837
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGL 179
+ G F L L L TRI+ + ++ L +LN+ +C ITD + LS +
Sbjct: 838 S-GWNVFGTLHQLRVATLSN-TRINDENIQHVSECKSLNTLNLAFCKDITD--VTALSTI 893
Query: 180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNLN 236
T L+ L + C GI L L K+ +L+++ C + + S LG SL LNL
Sbjct: 894 TMLEELNLDCCHNIRKGIETLGKLPKVRILSMKECYMGDSDAQQCSILGNSKSLVKLNLE 953
Query: 237 RCQ-----------------LSDDGCE-----KFSKIGSLKVLNLGFNEITDECLVHLKG 274
R + D C FS + L+VLNL + +I D+ ++
Sbjct: 954 RSMGFISVKALSNIATLEELVLDSVCGIYDVLSFSCLPRLRVLNLKYTDINDDVTKNISE 1013
Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF- 333
+L+SLNL C ++D V LS L+ LE +N++F
Sbjct: 1014 SKSLQSLNLSHCKW------------------VTDISV-------LSSLSTLEELNVNFC 1048
Query: 334 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAY 391
GI G L L L+ L IT +A L+S L L F +++D Y
Sbjct: 1049 NGIRKG-WESLGKLPLLRVAILSDTNITAKDIACLSSCKKLVKLQFFRCEKLSDVTVVY 1106
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 92/365 (25%), Positives = 157/365 (43%), Gaps = 55/365 (15%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISD-------------------GGLEHLRG 104
LS +++T + L C L L F C ++SD GL+ L
Sbjct: 1069 LSDTNITAKDIACLSSCKKLVKLQFFRCEKLSDVTVVYEIQSLEELIVRKYSDGLKGLNA 1128
Query: 105 LSNLTSLSFR--RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
L L+ L F RN + +++ +LV+L++E + L + LE L++
Sbjct: 1129 LGTLSRLRFLHLRNARGSDISVESIGTSKSLVRLNIETREELTDA-TPLSNITSLEELSL 1187
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
+ C T L L L+SL + S ++D+ + + + +T LNL +
Sbjct: 1188 RDCG-DTLEGAWTLGKLPRLRSLDLGLSDISDNTLDEICLSRFITSLNLRY-NFKLTDIS 1245
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD-ECLVHLKGLTNLESL 281
S+S L +L LNL+ C G E S++ L+VLNL +T + ++ +L +L
Sbjct: 1246 SISNLTALEELNLSGCHRITSGWEALSELPRLRVLNLESTSVTTRDGGYYISRCKSLVTL 1305
Query: 282 NLDSCGIGD----------------------EGLVNLTGLCNLKCLELSDTQVGSSGLRH 319
NL+SC + D +G L L L+ L L D+ + LR
Sbjct: 1306 NLESCDMTDASCLANIKTLEELHIGECDELTQGFSALFTLPRLRILNLMDSLITDEDLRE 1365
Query: 320 LSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNL----DARQITDTGLAALTSLTGL 374
+ +E +NLS+ ++D + L + S+K L+L D R++ + G +L L L
Sbjct: 1366 IQPPHTIEELNLSYCKNLND--ITPLGRIKSIKKLHLSQSHDVRRLRE-GFRSLLELPCL 1422
Query: 375 THLDL 379
+ +DL
Sbjct: 1423 SWVDL 1427
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 94/229 (41%), Gaps = 55/229 (24%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L S+DL SD++D+ L + + SL+ + +++D + +SNLT+L
Sbjct: 1206 LRSLDLGLSDISDNTLDEICLSRFITSLNLRYNFKLTD-----ISSISNLTALE------ 1254
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
+L+L C RI G L L +L LN++
Sbjct: 1255 ----------------ELNLSGCHRITSGWEALSELPRLRVLNLE--------------- 1283
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT-AACLDSLSALGSLFYLNLNR 237
S S T G Y+ + L LNLE C +T A+CL ++ L L++
Sbjct: 1284 ---------STSVTTRDGGYYISRCKSLVTLNLESCDMTDASCLANIKTLEE---LHIGE 1331
Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 286
C G + L++LNL + ITDE L ++ +E LNL C
Sbjct: 1332 CDELTQGFSALFTLPRLRILNLMDSLITDEDLREIQPPHTIEELNLSYC 1380
Score = 45.8 bits (107), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 87/186 (46%), Gaps = 29/186 (15%)
Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGL--------MKLESLNIKWCN------------ 166
G+ L +L+ R HG LVN+ L ++L S NI +
Sbjct: 201 LQGVSKLKQLEELRIEYPHGKLVNMISLNNLDMLKRLRLRSNNIDNNDARHLFSVGTLEE 260
Query: 167 -CITD----SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAAC 220
ITD ++++ +S LTNLK L+++ + + DS + + KL+ L++ C VT A
Sbjct: 261 LAITDTMQLTNIREISRLTNLKCLELNSTNIDDSCVEEISACVKLSKLSVSECNNVTDA- 319
Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 280
+S L +L LNL+ C ++ G + L++L+L + D CL L +LE
Sbjct: 320 -TPISQLAALEELNLSNCHIT-KGIGTLGMLLRLRILDLSGVPVEDNCLKDLCDCGSLER 377
Query: 281 LNLDSC 286
LN+ C
Sbjct: 378 LNISYC 383
Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 69/136 (50%), Gaps = 7/136 (5%)
Query: 254 LKVLNLGFNEITDECLVHLKGLTNLESLNL-DSCGIGDEGLVNLTGLCNLKCLELSDTQV 312
LK L L N I + HL + LE L + D+ + + + ++ L NLKCLEL+ T +
Sbjct: 234 LKRLRLRSNNIDNNDARHLFSVGTLEELAITDTMQLTN--IREISRLTNLKCLELNSTNI 291
Query: 313 GSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 371
S + +S L +++S ++D + ++ L++L+ LNL IT G+ L L
Sbjct: 292 DDSCVEEISACVKLSKLSVSECNNVTDAT--PISQLAALEELNLSNCHITK-GIGTLGML 348
Query: 372 TGLTHLDLFGARITDS 387
L LDL G + D+
Sbjct: 349 LRLRILDLSGVPVEDN 364
>gi|223698643|gb|ACN19002.1| internalin A [Listeria monocytogenes]
gi|223698646|gb|ACN19004.1| internalin A [Listeria monocytogenes]
gi|223698670|gb|ACN19020.1| internalin A [Listeria monocytogenes]
gi|223698673|gb|ACN19022.1| internalin A [Listeria monocytogenes]
gi|223698718|gb|ACN19052.1| internalin A [Listeria monocytogenes]
gi|223698754|gb|ACN19076.1| internalin A [Listeria monocytogenes]
gi|223698757|gb|ACN19078.1| internalin A [Listeria monocytogenes]
gi|223698796|gb|ACN19104.1| internalin A [Listeria monocytogenes]
gi|223698826|gb|ACN19124.1| internalin A [Listeria monocytogenes]
gi|223698829|gb|ACN19126.1| internalin A [Listeria monocytogenes]
gi|223698832|gb|ACN19128.1| internalin A [Listeria monocytogenes]
gi|223698862|gb|ACN19148.1| internalin A [Listeria monocytogenes]
gi|223698895|gb|ACN19170.1| internalin A [Listeria monocytogenes]
gi|223698925|gb|ACN19190.1| internalin A [Listeria monocytogenes]
gi|223698928|gb|ACN19192.1| internalin A [Listeria monocytogenes]
gi|223698931|gb|ACN19194.1| internalin A [Listeria monocytogenes]
gi|223698934|gb|ACN19196.1| internalin A [Listeria monocytogenes]
gi|223698937|gb|ACN19198.1| internalin A [Listeria monocytogenes]
gi|223698940|gb|ACN19200.1| internalin A [Listeria monocytogenes]
gi|223698943|gb|ACN19202.1| internalin A [Listeria monocytogenes]
Length = 715
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 105/329 (31%), Positives = 166/329 (50%), Gaps = 39/329 (11%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 13 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 66
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 67 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 118
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 119 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 171
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 172 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 225
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
L GL L LEL++ Q+ + +S L NL + L F ISD + ++ L+ L+ L
Sbjct: 226 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRL 281
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGA 382
+++D ++SL LT+++ A
Sbjct: 282 FFYNNKVSD-----VSSLANLTNINWLSA 305
>gi|384252696|gb|EIE26172.1| RNI-like protein [Coccomyxa subellipsoidea C-169]
Length = 663
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 101/318 (31%), Positives = 145/318 (45%), Gaps = 25/318 (7%)
Query: 89 NFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-- 146
F I D L L GLS L L F NA+ G + L +L L + G
Sbjct: 183 RFLITERDAVL--LGGLSRLQHLQF---NAVAFDGRTLISKLSSLQGLRQLEMANVVGAY 237
Query: 147 ---GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ-ISCSKVTD---SGIAY 199
G LK L KL SL ++ N + + P+ L+ L+SLQ +S ++ G+
Sbjct: 238 PAEGDAFLKSLTKLSSLRMR--NDSATAKLPPMHCLSELRSLQELSLTEHLHLLLPGLTN 295
Query: 200 LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL-NRCQLSDDGCEKFSKIGSLKVLN 258
L L L L L VT L AL L L++ + +++D G S + L L+
Sbjct: 296 LSALTDLRQLRLVKVGVTNGVLRCAGALTKLQSLHIPDAFRVTDTGLHHLSSLTGLTHLD 355
Query: 259 LGF------NEITDECLVHLKGLTNLESLNLD-SCGIGDEGLVNLTGLCNLKCLELSDTQ 311
+IT+ + L LTNL SLNL + EGL L L CL+LS
Sbjct: 356 FCSPSHRRDEDITNAGVAALSALTNLRSLNLAGHSEVTAEGLAFLADATALTCLDLSGLP 415
Query: 312 VGSSG-LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 370
+G +G + L+ LTNL S+ L T +S+ +++L L++L SL L I D AAL
Sbjct: 416 LGPTGGVDFLASLTNLRSLCLQRTQLSNEHVQQLGSLTALTSLGLAWCAIDDEAAAALAP 475
Query: 371 LTGLTHLDLFGARITDSG 388
LT L LD+ +T++G
Sbjct: 476 LTKLADLDVRYCPMTNAG 493
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 84/274 (30%), Positives = 132/274 (48%), Gaps = 26/274 (9%)
Query: 102 LRGLSNLTSLSFRRNNAITAQ--GMKAFAGLINLVKLDL-ERCTRIHGGLVNLKGLMKLE 158
L+ L+ L+SL R N++ TA+ M + L +L +L L E + GL NL L L
Sbjct: 245 LKSLTKLSSLRMR-NDSATAKLPPMHCLSELRSLQELSLTEHLHLLLPGLTNLSALTDLR 303
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
L + +T+ ++ LT L+SL I +VTD+G+ +L L LT L+
Sbjct: 304 QLRLVKVG-VTNGVLRCAGALTKLQSLHIPDAFRVTDTGLHHLSSLTGLTHLDF------ 356
Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLT 276
C S + +++ G S + +L+ LNL G +E+T E L L T
Sbjct: 357 --CSPS----------HRRDEDITNAGVAALSALTNLRSLNLAGHSEVTAEGLAFLADAT 404
Query: 277 NLESLNLDSCGIGDEGLVN-LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 335
L L+L +G G V+ L L NL+ L L TQ+ + ++ L LT L S+ L++
Sbjct: 405 ALTCLDLSGLPLGPTGGVDFLASLTNLRSLCLQRTQLSNEHVQQLGSLTALTSLGLAWCA 464
Query: 336 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 369
I D + LA L+ L L++ +T+ GL L+
Sbjct: 465 IDDEAAAALAPLTKLADLDVRYCPMTNAGLCQLS 498
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 82/184 (44%), Gaps = 38/184 (20%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQ-------ISDGGLEHLRGLSNLTSLSFRRNNAITA 121
VTD+GL HL + L LD FC I++ G+ L L+NL SL+ ++ +TA
Sbjct: 337 VTDTGLHHLSSLTGLTHLD--FCSPSHRRDEDITNAGVAALSALTNLRSLNLAGHSEVTA 394
Query: 122 QGMKAF--------------------------AGLINLVKLDLERCTRIHGGLVNLKGLM 155
+G+ AF A L NL L L+R + + L L
Sbjct: 395 EGL-AFLADATALTCLDLSGLPLGPTGGVDFLASLTNLRSLCLQRTQLSNEHVQQLGSLT 453
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL-KGLQKLTLLNLEGC 214
L SL + WC I D L+ LT L L + +T++G+ L + + L + +EGC
Sbjct: 454 ALTSLGLAWC-AIDDEAAAALAPLTKLADLDVRYCPMTNAGLCQLSRAMPDLAIFAVEGC 512
Query: 215 PVTA 218
P T+
Sbjct: 513 PATS 516
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 84/176 (47%), Gaps = 6/176 (3%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF-----RRNNAITAQGMKAFAGLINLVK 135
+ LQSL +++D GL HL L+ LT L F RR+ IT G+ A + L NL
Sbjct: 324 TKLQSLHIPDAFRVTDTGLHHLSSLTGLTHLDFCSPSHRRDEDITNAGVAALSALTNLRS 383
Query: 136 LDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 194
L+L + + GL L L L++ + L+ LTNL+SL + +++++
Sbjct: 384 LNLAGHSEVTAEGLAFLADATALTCLDLSGLPLGPTGGVDFLASLTNLRSLCLQRTQLSN 443
Query: 195 SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 250
+ L L LT L L C + +L+ L L L++ C +++ G + S+
Sbjct: 444 EHVQQLGSLTALTSLGLAWCAIDDEAAAALAPLTKLADLDVRYCPMTNAGLCQLSR 499
>gi|298359882|gb|ADI77520.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 105/329 (31%), Positives = 166/329 (50%), Gaps = 39/329 (11%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
L GL L LEL++ Q+ + +S L NL + L F ISD + ++ L+ L+ L
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRL 366
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGA 382
+++D ++SL LT+++ A
Sbjct: 367 FFYNNKVSD-----VSSLANLTNINWLSA 390
>gi|223698664|gb|ACN19016.1| internalin A [Listeria monocytogenes]
Length = 715
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 115/358 (32%), Positives = 172/358 (48%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 13 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 66
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 67 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 118
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 119 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 171
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 172 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 225
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 226 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 283
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 284 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNY 339
>gi|167862032|gb|ACA05715.1| InlA [Listeria monocytogenes]
Length = 800
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 105/329 (31%), Positives = 166/329 (50%), Gaps = 39/329 (11%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
L GL L LEL++ Q+ + +S L NL + L F ISD + ++ L+ L+ L
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRL 366
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGA 382
+++D ++SL LT+++ A
Sbjct: 367 FFYNNKVSD-----VSSLANLTNINWLSA 390
>gi|223698835|gb|ACN19130.1| internalin A [Listeria monocytogenes]
Length = 715
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 105/329 (31%), Positives = 166/329 (50%), Gaps = 39/329 (11%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 13 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 66
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 67 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 118
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 119 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 171
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 172 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 225
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
L GL L LEL++ Q+ + +S L NL + L F ISD + ++ L+ L+ L
Sbjct: 226 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRL 281
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGA 382
+++D ++SL LT+++ A
Sbjct: 282 FFYNNKVSD-----VSSLANLTNINWLSA 305
>gi|242057027|ref|XP_002457659.1| hypothetical protein SORBIDRAFT_03g011312 [Sorghum bicolor]
gi|241929634|gb|EES02779.1| hypothetical protein SORBIDRAFT_03g011312 [Sorghum bicolor]
Length = 81
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/53 (73%), Positives = 45/53 (84%)
Query: 341 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
L+K++GLSS+K LNLD RQIT+TGLA+L SLTGLTHLDLFGARI DSG R
Sbjct: 29 LKKISGLSSMKPLNLDNRQITNTGLASLASLTGLTHLDLFGARIIDSGMNCFR 81
>gi|112961790|gb|ABI28546.1| internalin A [Listeria monocytogenes]
Length = 693
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 115/351 (32%), Positives = 166/351 (47%), Gaps = 54/351 (15%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
S + +TD + LKD + L + N QI+D + L L+NLT L+ NN IT
Sbjct: 1 FSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQIT--D 52
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
+ L NL +L+L T + L GL L+ L+ N +TD +KPL+ LT L+
Sbjct: 53 IDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPLANLTTLE 106
Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNLNRCQL 240
L IS +KV+D + L KLT NLE T + ++ LG +L L+LN QL
Sbjct: 107 RLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSLNGNQL 159
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
D G + + +L L+L N+I++ L L GLT L L L + I + + L GL
Sbjct: 160 KDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLT 213
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------------- 343
L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 214 ALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSD 271
Query: 344 ---LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 272 VSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNY 320
>gi|22347572|gb|AAM95931.1| internalin A precursor [Listeria monocytogenes]
Length = 741
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 102/312 (32%), Positives = 156/312 (50%), Gaps = 37/312 (11%)
Query: 74 LIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINL 133
+ LKD + L + N QI+D + L L+NLT L+ NN IT + L NL
Sbjct: 57 ITPLKDLTKLVDIVMNNN-QITD--ISPLANLTNLTGLTLF-NNQIT--DIDPLKNLTNL 110
Query: 134 VKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT 193
+L+L T + L GL L+ L+ N +TD +KPL+ LT L+ L IS +KV+
Sbjct: 111 NRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPLANLTTLERLDISSNKVS 164
Query: 194 DSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSK 250
D + L KLT NLE T + ++ LG +L L+LN QL D G +
Sbjct: 165 DISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LAS 215
Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 310
+ +L L+L N+I++ L L GLT L L L + I + + L GL L LEL++
Sbjct: 216 LTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNEN 271
Query: 311 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 370
Q+ + +S L NL + L F ISD + ++ L+ L+ L +++D ++S
Sbjct: 272 QL--EDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRLFFYNNKVSD-----VSS 322
Query: 371 LTGLTHLDLFGA 382
L LT+++ A
Sbjct: 323 LANLTNINWLSA 334
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 78/144 (54%), Gaps = 14/144 (9%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N GFN++TD + LK LT L + +++ I D + L L NL
Sbjct: 36 DGLEY---LNNLTQINFGFNQLTD--ITPLKDLTKLVDIVMNNNQITD--ISPLANLTNL 88
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + + L LTNL + LS ISD + L+GL++L+ L+ Q+TD
Sbjct: 89 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQLSF-GNQVTD 143
Query: 363 TGLAALTSLTGLTHLDLFGARITD 386
L L +LT L LD+ +++D
Sbjct: 144 --LKPLANLTTLERLDISSNKVSD 165
>gi|223698607|gb|ACN18978.1| internalin A [Listeria monocytogenes]
gi|223698703|gb|ACN19042.1| internalin A [Listeria monocytogenes]
gi|223698760|gb|ACN19080.1| internalin A [Listeria monocytogenes]
gi|223698907|gb|ACN19178.1| internalin A [Listeria monocytogenes]
gi|223698910|gb|ACN19180.1| internalin A [Listeria monocytogenes]
gi|223698916|gb|ACN19184.1| internalin A [Listeria monocytogenes]
gi|223698919|gb|ACN19186.1| internalin A [Listeria monocytogenes]
gi|223698964|gb|ACN19216.1| internalin A [Listeria monocytogenes]
Length = 715
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 105/329 (31%), Positives = 166/329 (50%), Gaps = 39/329 (11%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 13 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 66
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 67 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 118
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 119 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 171
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 172 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 225
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
L GL L LEL++ Q+ + +S L NL + L F ISD + ++ L+ L+ L
Sbjct: 226 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRL 281
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGA 382
+++D ++SL LT+++ A
Sbjct: 282 FFYNNKVSD-----VSSLANLTNINWLSA 305
>gi|443428838|gb|AGC92218.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 105/329 (31%), Positives = 166/329 (50%), Gaps = 39/329 (11%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
L GL L LEL++ Q+ + +S L NL + L F ISD + ++ L+ L+ L
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRL 366
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGA 382
+++D ++SL LT+++ A
Sbjct: 367 FFYNNKVSD-----VSSLANLTNINWLSA 390
>gi|223698655|gb|ACN19010.1| internalin A [Listeria monocytogenes]
gi|223698913|gb|ACN19182.1| internalin A [Listeria monocytogenes]
Length = 715
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 105/329 (31%), Positives = 166/329 (50%), Gaps = 39/329 (11%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 13 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 66
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 67 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 118
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 119 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 171
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 172 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 225
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
L GL L LEL++ Q+ + +S L NL + L F ISD + ++ L+ L+ L
Sbjct: 226 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRL 281
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGA 382
+++D ++SL LT+++ A
Sbjct: 282 FFYNNKVSD-----VSSLANLTNINWLSA 305
>gi|223698682|gb|ACN19028.1| internalin A [Listeria monocytogenes]
Length = 712
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 106/333 (31%), Positives = 169/333 (50%), Gaps = 36/333 (10%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 13 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 66
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 67 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 118
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 119 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 171
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 172 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 225
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
L GL L LEL++ Q+ + +S L NL + L F ISD + ++ L+ L+ L
Sbjct: 226 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRL 281
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
+++D +++L +LT + L +I+D
Sbjct: 282 FFYNNKVSD--VSSLANLTNINWLSAGHNQISD 312
>gi|302767392|ref|XP_002967116.1| hypothetical protein SELMODRAFT_87311 [Selaginella moellendorffii]
gi|300165107|gb|EFJ31715.1| hypothetical protein SELMODRAFT_87311 [Selaginella moellendorffii]
Length = 637
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 105/409 (25%), Positives = 182/409 (44%), Gaps = 60/409 (14%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
LQ + L G++D + +AS L ++D+S +++TD G+ L + +L+ L+ C
Sbjct: 171 LQVVVLKGCVGISDAGLCFLASNCKELTTIDVSYTEITDDGVRCLSNLPSLRVLNLAACS 230
Query: 93 QISDGGLEH------------LRGLSNL-------TSLSF---------RRNNAITAQGM 124
+ D GL R ++N+ SL F ++ + IT Q +
Sbjct: 231 NVGDAGLTRTSTSLLELDLSCCRSVTNVGISFLSKRSLQFLKLGFCSPVKKRSQITGQLL 290
Query: 125 KAFAGLINLVKLDLERCTRIHGGLVNLKG--LMKLESLNIKWCNCITDSDMKPL-SGLTN 181
+A L + L L C I G + G ++L L++ C +TDS M + G N
Sbjct: 291 EAVGKLTQIQTLKLAGC-EIAGDGLRFVGSCCLQLSDLSLSKCRGVTDSGMASIFHGCKN 349
Query: 182 LKSLQISC----SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL----GSLFYL 233
L+ L ++C +++T IA + L L +E C + +++ L L L
Sbjct: 350 LRKLDLTCCLDLTEITAYNIA--RSSAGLVSLKIEACRILTE--NNIPLLMERCSCLEEL 405
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL-KGLTNLESLNLDSCG-IGDE 291
++ C + D G E +K LK L LGF +++D + H+ + ++L L+L G +GD
Sbjct: 406 DVTDCNIDDAGLECIAKCKFLKTLKLGFCKVSDNGIEHVGRNCSDLIELDLYRSGNVGDA 465
Query: 292 GLVNLTGLC------NLK-CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 344
G+ ++ C NL C ++D + S + LS L LE G+ +KL
Sbjct: 466 GVASIAAGCRKLRILNLSYCPNITDASIVS--ISQLSHLQQLEIRGCKRVGLE----KKL 519
Query: 345 AGLSSLKSLNLDARQITDTGLAALT-SLTGLTHLDLFGARITDSGAAYL 392
+L L+L I D G+ ++ L L+L RI+++G L
Sbjct: 520 PEFKNLVELDLKHCGIGDRGMTSIVYCFPNLQQLNLSYCRISNAGLVML 568
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 111/389 (28%), Positives = 168/389 (43%), Gaps = 86/389 (22%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLS--NLTSLSFRRNNAITAQGMKAFA---------- 128
+ ++SLD + CI+I+D L + L+ L SL R T G+ A A
Sbjct: 65 TGIESLDLSSCIKITDEDLALVGELAGTRLRSLGLARMGGFTVAGIVALARNCSALVELD 124
Query: 129 ----------------GLINLVKLDLERCTRIH-GGLVNLK-GLMKLESLNIKWCNCITD 170
L +L KLDL C I GL L G KL+ + +K C I+D
Sbjct: 125 LRCCNSLGDLELAAVCQLGSLRKLDLTGCYMISDAGLGCLAAGCKKLQVVVLKGCVGISD 184
Query: 171 SDMKPL-SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALG 228
+ + L S L ++ +S +++TD G+ L L L +LNL C V A L S
Sbjct: 185 AGLCFLASNCKELTTIDVSYTEITDDGVRCLSNLPSLRVLNLAACSNVGDAGLTRTST-- 242
Query: 229 SLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF-------NEITDECLVHLKGLTNLES 280
SL L+L+ C+ +++ G SK SL+ L LGF ++IT + L + LT +++
Sbjct: 243 SLLELDLSCCRSVTNVGISFLSK-RSLQFLKLGFCSPVKKRSQITGQLLEAVGKLTQIQT 301
Query: 281 LNLDSCGIGDEGLVNLTGLCNLKCLELSD---------TQVGSSGLRHLSGLTNLESINL 331
L L C I +GL G C CL+LSD T G + + H G NL ++L
Sbjct: 302 LKLAGCEIAGDGL-RFVGSC---CLQLSDLSLSKCRGVTDSGMASIFH--GCKNLRKLDL 355
Query: 332 S----FTGISDGSL-RKLAGLSSLK-----------------------SLNLDARQITDT 363
+ T I+ ++ R AGL SLK L++ I D
Sbjct: 356 TCCLDLTEITAYNIARSSAGLVSLKIEACRILTENNIPLLMERCSCLEELDVTDCNIDDA 415
Query: 364 GLAALTSLTGLTHLDLFGARITDSGAAYL 392
GL + L L L +++D+G ++
Sbjct: 416 GLECIAKCKFLKTLKLGFCKVSDNGIEHV 444
>gi|219821387|gb|ACL37836.1| internalin A [Listeria monocytogenes]
Length = 739
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 102/312 (32%), Positives = 156/312 (50%), Gaps = 37/312 (11%)
Query: 74 LIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINL 133
+ LKD + L + N QI+D + L L+NLT L+ NN IT + L NL
Sbjct: 55 ITPLKDLTKLVDIVMNNN-QITD--ISPLANLTNLTGLTLF-NNQIT--DIDPLKNLTNL 108
Query: 134 VKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT 193
+L+L T + L GL L+ L + N +TD +KPL+ LT L+ L IS +KV+
Sbjct: 109 NRLELSSNTI--SDISALSGLTNLQQL--SFGNQVTD--LKPLANLTTLERLDISSNKVS 162
Query: 194 DSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSK 250
D + L KLT NLE T + ++ LG +L L+LN QL D G +
Sbjct: 163 DISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LAS 213
Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 310
+ +L L+L N+I++ L L GLT L L L + I + + L GL L LEL++
Sbjct: 214 LTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNEN 269
Query: 311 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 370
Q+ + +S L NL + L F ISD + ++ L+ L+ L +++D ++S
Sbjct: 270 QL--EDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRLFFYNNKVSD-----VSS 320
Query: 371 LTGLTHLDLFGA 382
L LT+++ A
Sbjct: 321 LANLTNINWLSA 332
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 78/144 (54%), Gaps = 14/144 (9%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N GFN++TD + LK LT L + +++ I D + L L NL
Sbjct: 34 DGLEY---LNNLTQINFGFNQLTD--ITPLKDLTKLVDIVMNNNQITD--ISPLANLTNL 86
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + + L LTNL + LS ISD + L+GL++L+ L+ Q+TD
Sbjct: 87 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQLSF-GNQVTD 141
Query: 363 TGLAALTSLTGLTHLDLFGARITD 386
L L +LT L LD+ +++D
Sbjct: 142 --LKPLANLTTLERLDISSNKVSD 163
>gi|148607492|gb|ABQ95522.1| InlA [Listeria monocytogenes]
Length = 800
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 115/358 (32%), Positives = 172/358 (48%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNY 424
>gi|16802477|ref|NP_463962.1| internalin A [Listeria monocytogenes EGD-e]
gi|386049359|ref|YP_005967350.1| internalin-A [Listeria monocytogenes FSL R2-561]
gi|404282867|ref|YP_006683764.1| internalin A [Listeria monocytogenes SLCC2372]
gi|403399437|sp|P0DJM0.1|INLA_LISMO RecName: Full=Internalin-A; Flags: Precursor
gi|12054782|emb|CAC20628.1| internalin A [Listeria monocytogenes]
gi|16409810|emb|CAC98512.1| Internalin A [Listeria monocytogenes EGD-e]
gi|130774817|gb|ABO32421.1| InlA [Listeria monocytogenes]
gi|130774821|gb|ABO32423.1| InlA [Listeria monocytogenes]
gi|130774823|gb|ABO32424.1| InlA [Listeria monocytogenes]
gi|150371782|dbj|BAF65680.1| internalin A [Listeria monocytogenes]
gi|150371794|dbj|BAF65686.1| internalin A [Listeria monocytogenes]
gi|150371804|dbj|BAF65691.1| internalin A [Listeria monocytogenes]
gi|150371820|dbj|BAF65699.1| internalin A [Listeria monocytogenes]
gi|150371846|dbj|BAF65712.1| internalin A [Listeria monocytogenes]
gi|150371852|dbj|BAF65715.1| internalin A [Listeria monocytogenes]
gi|150371856|dbj|BAF65717.1| internalin A [Listeria monocytogenes]
gi|150371860|dbj|BAF65719.1| internalin A [Listeria monocytogenes]
gi|150371868|dbj|BAF65723.1| internalin A [Listeria monocytogenes]
gi|167861980|gb|ACA05689.1| InlA [Listeria monocytogenes]
gi|194239382|emb|CAQ76831.1| internalin A [Listeria monocytogenes]
gi|298359818|gb|ADI77488.1| internalin A [Listeria monocytogenes]
gi|298359832|gb|ADI77495.1| internalin A [Listeria monocytogenes]
gi|298360054|gb|ADI77606.1| internalin A [Listeria monocytogenes]
gi|298360128|gb|ADI77643.1| internalin A [Listeria monocytogenes]
gi|298360212|gb|ADI77685.1| internalin A [Listeria monocytogenes]
gi|298360216|gb|ADI77687.1| internalin A [Listeria monocytogenes]
gi|298360256|gb|ADI77707.1| internalin A [Listeria monocytogenes]
gi|298360522|gb|ADI77840.1| internalin A [Listeria monocytogenes]
gi|346423205|gb|AEO24730.1| internalin-A [Listeria monocytogenes FSL R2-561]
gi|404232369|emb|CBY53772.1| internalin A (LPXTG motif) [Listeria monocytogenes SLCC2372]
Length = 800
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 105/329 (31%), Positives = 166/329 (50%), Gaps = 39/329 (11%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
L GL L LEL++ Q+ + +S L NL + L F ISD + ++ L+ L+ L
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRL 366
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGA 382
+++D ++SL LT+++ A
Sbjct: 367 FFYNNKVSD-----VSSLANLTNINWLSA 390
>gi|223698892|gb|ACN19168.1| internalin A [Listeria monocytogenes]
Length = 715
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 106/333 (31%), Positives = 169/333 (50%), Gaps = 36/333 (10%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 13 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 66
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 67 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 118
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 119 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 171
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 172 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 225
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
L GL L LEL++ Q+ + +S L NL + L F ISD + ++ L+ L+ L
Sbjct: 226 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRL 281
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
+++D +++L +LT + L +I+D
Sbjct: 282 FFYNNKVSD--VSSLANLTNINWLSAGHNQISD 312
>gi|290989752|ref|XP_002677501.1| predicted protein [Naegleria gruberi]
gi|284091109|gb|EFC44757.1| predicted protein [Naegleria gruberi]
Length = 340
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 85/313 (27%), Positives = 141/313 (45%), Gaps = 39/313 (12%)
Query: 73 GLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLIN 132
G+ +L + NL L N +I D G E + G+ LT L N+ IT +G K + L
Sbjct: 47 GIKYLGNLMNLSELYINSN-EIGDNGAEDISGMKQLTKLDVSSND-ITTKGAKHISKLNK 104
Query: 133 LVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM----------KPLSGLTNL 182
LV L +E +++ +G+ + N +T+ D+ K +S L+ L
Sbjct: 105 LVSLKMEE------NMIDAQGIKYI----TDQLNQLTELDIGSNDLGVLGAKAVSELSQL 154
Query: 183 KSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
SL I + + + G AY+ L LT L + + + + L L L ++ L D
Sbjct: 155 TSLSIENNNLLNEGAAYISRLLNLTDLCINSNQIDSEGAKDIIKLKQLTTLFISGNSLLD 214
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
+G + S++ +L VL++ NE+TDE + + L L++L +D I DEG+ ++ GL L
Sbjct: 215 EGAKLISELNNLTVLDISDNELTDEGVEPISKLKQLKTLEIDENQISDEGIESICGLNQL 274
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA----- 357
L + + + GL +SG I D + L++LK L +D
Sbjct: 275 TELNIDYNLISAEGLSSISG-----------NEIGDEGAEIIGDLTNLKELTVDQNSRSK 323
Query: 358 -RQITDTGLAALT 369
+I T L LT
Sbjct: 324 YHEILKTKLPLLT 336
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 71/273 (26%), Positives = 130/273 (47%), Gaps = 13/273 (4%)
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
++G+K L+NL +L + G ++ G+ +L L++ N IT K +S L
Sbjct: 45 SKGIKYLGNLMNLSELYINSNEIGDNGAEDISGMKQLTKLDVS-SNDITTKGAKHISKLN 103
Query: 181 NLKSLQISCSKVTDSGIAYLKG-LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 239
L SL++ + + GI Y+ L +LT L++ + ++S L L L++
Sbjct: 104 KLVSLKMEENMIDAQGIKYITDQLNQLTELDIGSNDLGVLGAKAVSELSQLTSLSIENNN 163
Query: 240 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 299
L ++G S++ +L L + N+I E + L L +L + + DEG ++ L
Sbjct: 164 LLNEGAAYISRLLNLTDLCINSNQIDSEGAKDIIKLKQLTTLFISGNSLLDEGAKLISEL 223
Query: 300 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 359
NL L++SD ++ G+ +S L L+++ + ISD + + GL+ L LN+D
Sbjct: 224 NNLTVLDISDNELTDEGVEPISKLKQLKTLEIDENQISDEGIESICGLNQLTELNIDYNL 283
Query: 360 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
I+ GL++++ G I D GA +
Sbjct: 284 ISAEGLSSIS-----------GNEIGDEGAEII 305
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 74/272 (27%), Positives = 124/272 (45%), Gaps = 39/272 (14%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L +D+S +D+T G +H+ L+ L SL N
Sbjct: 81 LTKLDVSSNDITTK-------------------------GAKHISKLNKLVSLKMEE-NM 114
Query: 119 ITAQGMKAFAGLIN-LVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
I AQG+K +N L +LD+ G + L +L SL+I+ N + + +S
Sbjct: 115 IDAQGIKYITDQLNQLTELDIGSNDLGVLGAKAVSELSQLTSLSIENNNLLNEG-AAYIS 173
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
L NL L I+ +++ G + L++LT L + G + +S L +L L+++
Sbjct: 174 RLLNLTDLCINSNQIDSEGAKDIIKLKQLTTLFISGNSLLDEGAKLISELNNLTVLDISD 233
Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
+L+D+G E SK+ LK L + N+I+DE + + GL L LN+D I EGL +++
Sbjct: 234 NELTDEGVEPISKLKQLKTLEIDENQISDEGIESICGLNQLTELNIDYNLISAEGLSSIS 293
Query: 298 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 329
G ++G G + LTNL+ +
Sbjct: 294 G-----------NEIGDEGAEIIGDLTNLKEL 314
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 58/101 (57%), Gaps = 7/101 (6%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ ++L +D+S +++TD G+ + L++L+ + QISD G+E + GL+ LT L+
Sbjct: 221 SELNNLTVLDISDNELTDEGVEPISKLKQLKTLEIDEN-QISDEGIESICGLNQLTELNI 279
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGL 154
N I+A+G+ + +G N + + I G L NLK L
Sbjct: 280 DY-NLISAEGLSSISG--NEIG---DEGAEIIGDLTNLKEL 314
>gi|29823176|emb|CAD15503.2| probable lrr-gala family type III effector protein (gala 5)
[Ralstonia solanacearum GMI1000]
Length = 538
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 113/410 (27%), Positives = 180/410 (43%), Gaps = 42/410 (10%)
Query: 1 MLPRDISQQI--------FNELVYSRCLTEVSLEA-FRDCALQD-------LCLGQYPGV 44
LP DI ++I L + + ++EA R+ ++D L G YP +
Sbjct: 66 QLPPDIFREIARRSDPLTVQRLRVASKPVKAAIEADMRELVIKDRAGLAGVLRAGNYPAL 125
Query: 45 NDKWM------DVIASQGSSLLSVDLS---GSDVTDSGLIHLKDCSNLQSLDFNFCIQIS 95
+ D + +SL ++DLS GS +T +G+ HL S L + N ++
Sbjct: 126 EKLTLAGTFTDDDLRGLPASLKALDLSRCRGS-ITAAGIAHL---SRLPLVRLN--VRNK 179
Query: 96 DGGLEHLRGLSN---LTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
G E R L+N LTSL+ N I +G +A A L L++ RI G+ K
Sbjct: 180 RIGAEGARLLANHPTLTSLNVS-NGRIGPEGAQALAANTRLTTLNVS-GNRI--GVAGAK 235
Query: 153 GL---MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL 209
L L SL++ N I D + L+ T L +L + + + G L + LT L
Sbjct: 236 ALAANQTLRSLDVS-DNRIGDEGARELAACTQLTTLDANRNGIGVDGATALAASRTLTSL 294
Query: 210 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
+ G + A + +L+A L LN+ + DG + + +L L L N+I +
Sbjct: 295 AIGGNEIGDAGVLALAANARLTTLNVESTGVGADGVKALAASKTLTWLRLDGNDIGNAGA 354
Query: 270 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 329
L T+L +L+L+ IG EG L L L+L +G +G+R LS L +
Sbjct: 355 TALAASTSLTTLHLEHSRIGAEGAQALAANTKLTTLDLGYNDIGDAGVRALSANATLVWL 414
Query: 330 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
++ + D S LA +L +L++ I D G AL + LT LD+
Sbjct: 415 SVRRNNLEDASAVSLAAGKTLTTLDISGNGIQDQGAKALAANPTLTTLDV 464
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 79/312 (25%), Positives = 135/312 (43%), Gaps = 27/312 (8%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+ L ++++SG+ + +G L L+SLD + +I D G L + LT+L RN
Sbjct: 217 TRLTTLNVSGNRIGVAGAKALAANQTLRSLDVSDN-RIGDEGARELAACTQLTTLDANRN 275
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
I G A A L L + GG N I D+ + L
Sbjct: 276 -GIGVDGATALAASRTLTSLAI-------GG------------------NEIGDAGVLAL 309
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ L +L + + V G+ L + LT L L+G + A +L+A SL L+L
Sbjct: 310 AANARLTTLNVESTGVGADGVKALAASKTLTWLRLDGNDIGNAGATALAASTSLTTLHLE 369
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
++ +G + + L L+LG+N+I D + L L L++ + D V+L
Sbjct: 370 HSRIGAEGAQALAANTKLTTLDLGYNDIGDAGVRALSANATLVWLSVRRNNLEDASAVSL 429
Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
L L++S + G + L+ L ++++S I + R LA + L SL+L
Sbjct: 430 AAGKTLTTLDISGNGIQDQGAKALAANPTLTTLDVSSNDIKNAGARALAANARLVSLDLR 489
Query: 357 ARQITDTGLAAL 368
++ ++G AL
Sbjct: 490 NNRMEESGTRAL 501
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 76/276 (27%), Positives = 120/276 (43%), Gaps = 3/276 (1%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
+L S+D+S + + D G L C+ L +LD N I G L LTSL+ N
Sbjct: 242 TLRSLDVSDNRIGDEGARELAACTQLTTLDANRN-GIGVDGATALAASRTLTSLAIG-GN 299
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
I G+ A A L L++E G+ L L L + N I ++ L+
Sbjct: 300 EIGDAGVLALAANARLTTLNVESTGVGADGVKALAASKTLTWLRLD-GNDIGNAGATALA 358
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
T+L +L + S++ G L KLT L+L + A + +LSA +L +L++ R
Sbjct: 359 ASTSLTTLHLEHSRIGAEGAQALAANTKLTTLDLGYNDIGDAGVRALSANATLVWLSVRR 418
Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
L D + +L L++ N I D+ L L +L++ S I + G L
Sbjct: 419 NNLEDASAVSLAAGKTLTTLDISGNGIQDQGAKALAANPTLTTLDVSSNDIKNAGARALA 478
Query: 298 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333
L L+L + ++ SG R L L S+ +S
Sbjct: 479 ANARLVSLDLRNNRMEESGTRALLANRTLSSLGVSL 514
>gi|290972233|ref|XP_002668860.1| predicted protein [Naegleria gruberi]
gi|284082393|gb|EFC36116.1| predicted protein [Naegleria gruberi]
Length = 296
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 72/265 (27%), Positives = 127/265 (47%), Gaps = 30/265 (11%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
+ +L +LN++ N I + K +S L N+ +L IS + + G Y+ +++LT L +
Sbjct: 1 MKQLTNLNVRH-NDIDEEGAKYISELMNVSTLDISGNSINKRGAKYIGEMKQLTDLGMYC 59
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
C + +S+L L +L++N + D+G + +I L L++ N+I E + ++
Sbjct: 60 CSIGVEGTKYISSLNQLTHLSININNIGDEGAKYIGQIKQLTDLSICDNKIGSEGVKYIG 119
Query: 274 GLTNLESLNLDSCGIGDEGL----------------VNLT--GLCNLKCLE------LSD 309
L NL L + IGD G VN+T G+ + +E +SD
Sbjct: 120 QLKNLLKLYVSCNEIGDNGAQFISEMNQLTKLDISSVNITPIGIKYISKMEHLIDLMISD 179
Query: 310 TQVGSSGLRHLS--GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 367
+ S G +H+S LT+LE N I + L+ + L +L + +I D G+
Sbjct: 180 NNIDSMGAKHISQMKLTSLEVYN---NTIDVEGAKYLSEMEQLTNLEISKNEIGDKGVQF 236
Query: 368 LTSLTGLTHLDLFGARITDSGAAYL 392
L+ + LT LD+ +I+D GA Y+
Sbjct: 237 LSGMKQLTSLDINENKISDVGAKYI 261
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 70/296 (23%), Positives = 142/296 (47%), Gaps = 15/296 (5%)
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG------LMKLE 158
+ LT+L+ R N+ I +G K + L+N+ LD I G +N +G + +L
Sbjct: 1 MKQLTNLNVRHND-IDEEGAKYISELMNVSTLD------ISGNSINKRGAKYIGEMKQLT 53
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
L + +C I K +S L L L I+ + + D G Y+ +++LT L++ + +
Sbjct: 54 DLGM-YCCSIGVEGTKYISSLNQLTHLSININNIGDEGAKYIGQIKQLTDLSICDNKIGS 112
Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 278
+ + L +L L ++ ++ D+G + S++ L L++ IT + ++ + +L
Sbjct: 113 EGVKYIGQLKNLLKLYVSCNEIGDNGAQFISEMNQLTKLDISSVNITPIGIKYISKMEHL 172
Query: 279 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
L + I G +++ + L LE+ + + G ++LS + L ++ +S I D
Sbjct: 173 IDLMISDNNIDSMGAKHISQM-KLTSLEVYNNTIDVEGAKYLSEMEQLTNLEISKNEIGD 231
Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRS 394
++ L+G+ L SL+++ +I+D G + + L L +F I++ LR
Sbjct: 232 KGVQFLSGMKQLTSLDINENKISDVGAKYILEMKNLIDLSVFDNEISEDIIERLRE 287
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 70/297 (23%), Positives = 135/297 (45%), Gaps = 32/297 (10%)
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
++D+SG+ + G ++ + L L +C I G +++ L+ LT LS NN I
Sbjct: 30 TLDISGNSINKRGAKYIGEMKQLTDLGM-YCCSIGVEGTKYISSLNQLTHLSININN-IG 87
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
+G K + L DL C N I +K + L
Sbjct: 88 DEGAKYIGQIKQLT--DLSICD-----------------------NKIGSEGVKYIGQLK 122
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
NL L +SC+++ D+G ++ + +LT L++ +T + +S + L L ++ +
Sbjct: 123 NLLKLYVSCNEIGDNGAQFISEMNQLTKLDISSVNITPIGIKYISKMEHLIDLMISDNNI 182
Query: 241 SDDGCEKFS--KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
G + S K+ SL+V N N I E +L + L +L + IGD+G+ L+G
Sbjct: 183 DSMGAKHISQMKLTSLEVYN---NTIDVEGAKYLSEMEQLTNLEISKNEIGDKGVQFLSG 239
Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355
+ L L++++ ++ G +++ + NL +++ IS+ + +L + L L++
Sbjct: 240 MKQLTSLDINENKISDVGAKYILEMKNLIDLSVFDNEISEDIIERLREMKQLTYLDI 296
>gi|223698622|gb|ACN18988.1| internalin A [Listeria monocytogenes]
gi|223698634|gb|ACN18996.1| internalin A [Listeria monocytogenes]
gi|223698694|gb|ACN19036.1| internalin A [Listeria monocytogenes]
gi|223698712|gb|ACN19048.1| internalin A [Listeria monocytogenes]
gi|223698745|gb|ACN19070.1| internalin A [Listeria monocytogenes]
gi|223698751|gb|ACN19074.1| internalin A [Listeria monocytogenes]
gi|223698766|gb|ACN19084.1| internalin A [Listeria monocytogenes]
gi|223698769|gb|ACN19086.1| internalin A [Listeria monocytogenes]
gi|223698772|gb|ACN19088.1| internalin A [Listeria monocytogenes]
gi|223698775|gb|ACN19090.1| internalin A [Listeria monocytogenes]
gi|223698778|gb|ACN19092.1| internalin A [Listeria monocytogenes]
gi|223698787|gb|ACN19098.1| internalin A [Listeria monocytogenes]
gi|223698793|gb|ACN19102.1| internalin A [Listeria monocytogenes]
gi|223698799|gb|ACN19106.1| internalin A [Listeria monocytogenes]
gi|223698802|gb|ACN19108.1| internalin A [Listeria monocytogenes]
gi|223698805|gb|ACN19110.1| internalin A [Listeria monocytogenes]
gi|223698817|gb|ACN19118.1| internalin A [Listeria monocytogenes]
gi|223698859|gb|ACN19146.1| internalin A [Listeria monocytogenes]
gi|223698865|gb|ACN19150.1| internalin A [Listeria monocytogenes]
gi|223698979|gb|ACN19226.1| internalin A [Listeria monocytogenes]
Length = 715
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 105/329 (31%), Positives = 166/329 (50%), Gaps = 39/329 (11%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 13 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 66
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 67 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 118
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 119 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 171
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 172 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 225
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
L GL L LEL++ Q+ + +S L NL + L F ISD + ++ L+ L+ L
Sbjct: 226 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRL 281
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGA 382
+++D ++SL LT+++ A
Sbjct: 282 FFYNNKVSD-----VSSLANLTNINWLSA 305
>gi|443428862|gb|AGC92230.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 105/329 (31%), Positives = 166/329 (50%), Gaps = 39/329 (11%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL+ L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLISLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LGSLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
L GL L LEL++ Q+ + +S L NL + L F ISD + ++ L+ L+ L
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRL 366
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGA 382
+++D ++SL LT+++ A
Sbjct: 367 FFYNNKVSD-----VSSLANLTNINWLSA 390
>gi|290988772|ref|XP_002677066.1| predicted protein [Naegleria gruberi]
gi|284090672|gb|EFC44322.1| predicted protein [Naegleria gruberi]
Length = 289
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 113/229 (49%), Gaps = 1/229 (0%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
N + D+ L +T L +L+I + + D+ + + +++LT L+LE + S+S
Sbjct: 44 NILNDNWFNMLGRMTQLTTLEIGNNLIDDNMVKLISEMKQLTGLDLEINQIFNEGAKSIS 103
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
L +L YLN+ ++D+G E S++ +L L + IT + + L NL LN+
Sbjct: 104 ELRNLTYLNIGNNPINDEGIESISQLDNLTDLTVSSLRITSKSAKFISKLNNLTLLNIAY 163
Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT-GISDGSLRKL 344
IGDEG ++ + +LK L++S + G + +S L L + +S I D R +
Sbjct: 164 NNIGDEGAKFISEIKSLKILDISLNGISPIGAKSISELDQLTVLYISQNFSIGDEGARMI 223
Query: 345 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
+ + L L + I + G +++ + LTHLD+ I G + +R
Sbjct: 224 SEMKQLNELYIQDCFIGNAGAISISRMDKLTHLDISENEIQIEGESVIR 272
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 76/289 (26%), Positives = 135/289 (46%), Gaps = 17/289 (5%)
Query: 44 VNDKWMDVIASQGS-SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
V +W++VI + S+++ + + V + L DC S+ F I ++D L
Sbjct: 2 VTKQWLNVIRDRSELSMMANNHLVNQVNNEFL----DC--FVSITFARNI-LNDNWFNML 54
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
++ LT+L NN I +K + + L LDLE + G ++ L L LNI
Sbjct: 55 GRMTQLTTLEIG-NNLIDDNMVKLISEMKQLTGLDLEINQIFNEGAKSISELRNLTYLNI 113
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
N I D ++ +S L NL L +S ++T ++ L LTLLN+ +
Sbjct: 114 G-NNPINDEGIESISQLDNLTDLTVSSLRITSKSAKFISKLNNLTLLNIAYNNIGDEGAK 172
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN-EITDECLVHLKGLTNLESL 281
+S + SL L+++ +S G + S++ L VL + N I DE + + L L
Sbjct: 173 FISEIKSLKILDISLNGISPIGAKSISELDQLTVLYISQNFSIGDEGARMISEMKQLNEL 232
Query: 282 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG------LRHLSGLT 324
+ C IG+ G ++++ + L L++S+ ++ G ++HLS L+
Sbjct: 233 YIQDCFIGNAGAISISRMDKLTHLDISENEIQIEGESVIRDMKHLSYLS 281
>gi|22347546|gb|AAM95918.1| internalin A precursor [Listeria monocytogenes]
gi|22347550|gb|AAM95920.1| internalin A precursor [Listeria monocytogenes]
Length = 744
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 115/358 (32%), Positives = 172/358 (48%), Gaps = 54/358 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 42 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 95
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 96 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 147
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 148 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 200
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 201 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 254
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 255 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 312
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 313 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNY 368
>gi|17546520|ref|NP_519922.1| GALA protein 3 [Ralstonia solanacearum GMI1000]
Length = 522
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 113/410 (27%), Positives = 180/410 (43%), Gaps = 42/410 (10%)
Query: 1 MLPRDISQQI--------FNELVYSRCLTEVSLEA-FRDCALQD-------LCLGQYPGV 44
LP DI ++I L + + ++EA R+ ++D L G YP +
Sbjct: 50 QLPPDIFREIARRSDPLTVQRLRVASKPVKAAIEADMRELVIKDRAGLAGVLRAGNYPAL 109
Query: 45 NDKWM------DVIASQGSSLLSVDLS---GSDVTDSGLIHLKDCSNLQSLDFNFCIQIS 95
+ D + +SL ++DLS GS +T +G+ HL S L + N ++
Sbjct: 110 EKLTLAGTFTDDDLRGLPASLKALDLSRCRGS-ITAAGIAHL---SRLPLVRLN--VRNK 163
Query: 96 DGGLEHLRGLSN---LTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
G E R L+N LTSL+ N I +G +A A L L++ RI G+ K
Sbjct: 164 RIGAEGARLLANHPTLTSLNVS-NGRIGPEGAQALAANTRLTTLNVS-GNRI--GVAGAK 219
Query: 153 GL---MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL 209
L L SL++ N I D + L+ T L +L + + + G L + LT L
Sbjct: 220 ALAANQTLRSLDVS-DNRIGDEGARELAACTQLTTLDANRNGIGVDGATALAASRTLTSL 278
Query: 210 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
+ G + A + +L+A L LN+ + DG + + +L L L N+I +
Sbjct: 279 AIGGNEIGDAGVLALAANARLTTLNVESTGVGADGVKALAASKTLTWLRLDGNDIGNAGA 338
Query: 270 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 329
L T+L +L+L+ IG EG L L L+L +G +G+R LS L +
Sbjct: 339 TALAASTSLTTLHLEHSRIGAEGAQALAANTKLTTLDLGYNDIGDAGVRALSANATLVWL 398
Query: 330 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
++ + D S LA +L +L++ I D G AL + LT LD+
Sbjct: 399 SVRRNNLEDASAVSLAAGKTLTTLDISGNGIQDQGAKALAANPTLTTLDV 448
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 79/312 (25%), Positives = 135/312 (43%), Gaps = 27/312 (8%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+ L ++++SG+ + +G L L+SLD + +I D G L + LT+L RN
Sbjct: 201 TRLTTLNVSGNRIGVAGAKALAANQTLRSLDVSDN-RIGDEGARELAACTQLTTLDANRN 259
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
I G A A L L + GG N I D+ + L
Sbjct: 260 -GIGVDGATALAASRTLTSLAI-------GG------------------NEIGDAGVLAL 293
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ L +L + + V G+ L + LT L L+G + A +L+A SL L+L
Sbjct: 294 AANARLTTLNVESTGVGADGVKALAASKTLTWLRLDGNDIGNAGATALAASTSLTTLHLE 353
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
++ +G + + L L+LG+N+I D + L L L++ + D V+L
Sbjct: 354 HSRIGAEGAQALAANTKLTTLDLGYNDIGDAGVRALSANATLVWLSVRRNNLEDASAVSL 413
Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
L L++S + G + L+ L ++++S I + R LA + L SL+L
Sbjct: 414 AAGKTLTTLDISGNGIQDQGAKALAANPTLTTLDVSSNDIKNAGARALAANARLVSLDLR 473
Query: 357 ARQITDTGLAAL 368
++ ++G AL
Sbjct: 474 NNRMEESGTRAL 485
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 76/276 (27%), Positives = 120/276 (43%), Gaps = 3/276 (1%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
+L S+D+S + + D G L C+ L +LD N I G L LTSL+ N
Sbjct: 226 TLRSLDVSDNRIGDEGARELAACTQLTTLDANRN-GIGVDGATALAASRTLTSLAIG-GN 283
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
I G+ A A L L++E G+ L L L + N I ++ L+
Sbjct: 284 EIGDAGVLALAANARLTTLNVESTGVGADGVKALAASKTLTWLRLD-GNDIGNAGATALA 342
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
T+L +L + S++ G L KLT L+L + A + +LSA +L +L++ R
Sbjct: 343 ASTSLTTLHLEHSRIGAEGAQALAANTKLTTLDLGYNDIGDAGVRALSANATLVWLSVRR 402
Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
L D + +L L++ N I D+ L L +L++ S I + G L
Sbjct: 403 NNLEDASAVSLAAGKTLTTLDISGNGIQDQGAKALAANPTLTTLDVSSNDIKNAGARALA 462
Query: 298 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333
L L+L + ++ SG R L L S+ +S
Sbjct: 463 ANARLVSLDLRNNRMEESGTRALLANRTLSSLGVSL 498
>gi|330806226|ref|XP_003291073.1| hypothetical protein DICPUDRAFT_98891 [Dictyostelium purpureum]
gi|325078753|gb|EGC32387.1| hypothetical protein DICPUDRAFT_98891 [Dictyostelium purpureum]
Length = 793
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 101/343 (29%), Positives = 151/343 (44%), Gaps = 69/343 (20%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQ--DLCLGQYPGVNDKWMDVIAS-QGSS 58
LP ++ Q+I + L+ +L FR+C L +LC + P ++D W+++ S+
Sbjct: 294 LPDELCQKIIPLFQRRKILSSRTLSLFRNCKLTRLELCGKEVP-ISDDWLNITKGLMAST 352
Query: 59 LLSVDLS-GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
+ V++S S +TD G+ L NLQSLD ++ +I GL L
Sbjct: 353 ITYVNISKNSLLTDQGIASLSHLRNLQSLDISYVDKIDGSGLAAL--------------- 397
Query: 118 AITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
AG + L KL +E C ++ L L L SL CN +TD D +
Sbjct: 398 --------VDAG-VPLQKLQMEGCLSLKLPQLFTTLSKLKTLSSLYAGACN-MTDDDCQQ 447
Query: 176 LSGLTNLKSLQISCSKV-TDSGIAYLKGLQKLTLLNLEGCPVTAA----CLDSLSALGSL 230
LS L L L + + V T+ G+ ++ L +LT L++ G A CL L L SL
Sbjct: 448 LSQLQTLTHLDVCRNAVITNRGLQFICNLSRLTELDIGGINQLDAQGIKCLLQLPHLESL 507
Query: 231 FYLNLNRCQLSDDGC-----------------EKFSKIGSLKVLNLGF---------NEI 264
N C + DD C FS +G+ + NL + I
Sbjct: 508 AAEN---CGI-DDKCMNYIGSLKSLKSLSLINNPFSDVGAKHIGNLIYLTTLDLSMCANI 563
Query: 265 TDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLT-GLCNLKCL 305
TD LVH + L+ + LNL+ CG + D G+ +LT GL LK L
Sbjct: 564 TDATLVHFRNLSQISKLNLNFCGNLTDSGVTSLTGGLSQLKTL 606
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 90/311 (28%), Positives = 146/311 (46%), Gaps = 51/311 (16%)
Query: 113 FRRNNAITAQGMKAFAGLINLVKLDL-ERCTRIHGGLVNL-KGLMK--LESLNIKWCNCI 168
F+R ++++ + F L +L+L + I +N+ KGLM + +NI + +
Sbjct: 306 FQRRKILSSRTLSLFRN-CKLTRLELCGKEVPISDDWLNITKGLMASTITYVNISKNSLL 364
Query: 169 TDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLK----GLQKLTLLNLEGC-----PVTA 218
TD + LS L NL+SL IS K+ SG+A L LQKL +EGC P
Sbjct: 365 TDQGIASLSHLRNLQSLDISYVDKIDGSGLAALVDAGVPLQKL---QMEGCLSLKLPQLF 421
Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL------------------- 259
L L L SL+ C ++DD C++ S++ +L L++
Sbjct: 422 TTLSKLKTLSSLYA---GACNMTDDDCQQLSQLQTLTHLDVCRNAVITNRGLQFICNLSR 478
Query: 260 -------GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 312
G N++ + + L L +LESL ++CGI D+ + + L +LK L L +
Sbjct: 479 LTELDIGGINQLDAQGIKCLLQLPHLESLAAENCGIDDKCMNYIGSLKSLKSLSLINNPF 538
Query: 313 GSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTS 370
G +H+ L L +++LS I+D +L LS + LNL+ +TD+G+ +LT
Sbjct: 539 SDVGAKHIGNLIYLTTLDLSMCANITDATLVHFRNLSQISKLNLNFCGNLTDSGVTSLTG 598
Query: 371 LTGLTHLDLFG 381
GL+ L G
Sbjct: 599 --GLSQLKTLG 607
Score = 38.1 bits (87), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 68/170 (40%), Gaps = 36/170 (21%)
Query: 37 CLGQYP----------GVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSL 86
CL Q P G++DK M+ I S S ++ +D G H+ + L +L
Sbjct: 497 CLLQLPHLESLAAENCGIDDKCMNYIGSLKSLKSLSLINNP-FSDVGAKHIGNLIYLTTL 555
Query: 87 DFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG 146
D + C I+D L H R LS ++ L+ +T G+ + G
Sbjct: 556 DLSMCANITDATLVHFRNLSQISKLNLNFCGNLTDSGVTSLTG----------------- 598
Query: 147 GLVNLKGLMKLESLNIKWCN-CITDSDMKPLSGLTNLKSLQISC-SKVTD 194
GL +L++L I CN + +PL L LQI SKV +
Sbjct: 599 ------GLSQLKTLGIIGCNRLLIKVKHRPLVLLVEDNQLQIKVISKVME 642
>gi|294358401|gb|ADE73853.1| InlA [Listeria monocytogenes]
Length = 800
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 105/329 (31%), Positives = 166/329 (50%), Gaps = 39/329 (11%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LAGLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
L GL L LEL++ Q+ + +S L NL + L F ISD + ++ L+ L+ L
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRL 366
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGA 382
+++D ++SL LT+++ A
Sbjct: 367 FFYNNKVSD-----VSSLANLTNINWLSA 390
>gi|51850107|dbj|BAD42395.1| leucine-rich repeat protein [Ralstonia solanacearum]
Length = 538
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 111/409 (27%), Positives = 178/409 (43%), Gaps = 40/409 (9%)
Query: 1 MLPRDISQQI--------FNELVYSRCLTEVSLEA-FRDCALQD-------LCLGQYPGV 44
LP DI ++I L + + ++EA R+ ++D L G YP +
Sbjct: 66 QLPPDIFREIARRSDPLTVQRLRVASKPVKAAIEADMRELVIKDRAGLAGVLRAGNYPAL 125
Query: 45 NDKWM------DVIASQGSSLLSVDLSG--SDVTDSGLIHLKDCSNLQSLDFNFCIQISD 96
+ D + +SL ++DLS +T +G+ HL S L + N ++
Sbjct: 126 EKLTLAGTFTDDDLRGLPASLKALDLSRCRGPITAAGIAHL---SRLPLVRLN--VRNKR 180
Query: 97 GGLEHLRGLSN---LTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
G E R L+N LTSL+ N I +G +A A L L++ RI G+ K
Sbjct: 181 IGAEGARLLANHPTLTSLNVS-NGRIGPEGAQALAANTRLTTLNVS-GNRI--GVAGAKA 236
Query: 154 L---MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
L L SL++ N I D + L+ T L +L + + + G L + LT L
Sbjct: 237 LAANQTLRSLDVS-DNRIGDEGARELAACTQLTTLDANRNGIGVDGATALAASRTLTSLA 295
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
+ G + A + +L+A L LN+ + DG + + +L L L N+I +
Sbjct: 296 IGGNEIGDAGVLALAANARLTTLNVESTGVGADGVKALAASKTLTWLRLDGNDIGNAGAT 355
Query: 271 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 330
L T+L +L+L+ IG EG L L L+L +G +G+R LS L ++
Sbjct: 356 ALAASTSLTTLHLEHSRIGAEGAQALAANTKLTTLDLGYNDIGDAGVRTLSANATLVWLS 415
Query: 331 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
+ + D S LA +L +L++ I D G AL + LT LD+
Sbjct: 416 VRRNNLEDASAVSLAAGKTLTTLDISGNGIQDQGAKALAANPTLTTLDV 464
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 79/312 (25%), Positives = 135/312 (43%), Gaps = 27/312 (8%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+ L ++++SG+ + +G L L+SLD + +I D G L + LT+L RN
Sbjct: 217 TRLTTLNVSGNRIGVAGAKALAANQTLRSLDVSDN-RIGDEGARELAACTQLTTLDANRN 275
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
I G A A L L + GG N I D+ + L
Sbjct: 276 -GIGVDGATALAASRTLTSLAI-------GG------------------NEIGDAGVLAL 309
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ L +L + + V G+ L + LT L L+G + A +L+A SL L+L
Sbjct: 310 AANARLTTLNVESTGVGADGVKALAASKTLTWLRLDGNDIGNAGATALAASTSLTTLHLE 369
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
++ +G + + L L+LG+N+I D + L L L++ + D V+L
Sbjct: 370 HSRIGAEGAQALAANTKLTTLDLGYNDIGDAGVRTLSANATLVWLSVRRNNLEDASAVSL 429
Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
L L++S + G + L+ L ++++S I + R LA + L SL+L
Sbjct: 430 AAGKTLTTLDISGNGIQDQGAKALAANPTLTTLDVSSNDIRNAGARALAANARLVSLDLR 489
Query: 357 ARQITDTGLAAL 368
++ ++G AL
Sbjct: 490 NNRMEESGTRAL 501
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 78/280 (27%), Positives = 124/280 (44%), Gaps = 11/280 (3%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
+L S+D+S + + D G L C+ L +LD N I G L LTSL+ N
Sbjct: 242 TLRSLDVSDNRIGDEGARELAACTQLTTLDANRN-GIGVDGATALAASRTLTSLAIG-GN 299
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC----NCITDSDM 173
I G+ A A L L++E T + G +K L ++L W N I ++
Sbjct: 300 EIGDAGVLALAANARLTTLNVE-STGV--GADGVKALAASKTLT--WLRLDGNDIGNAGA 354
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
L+ T+L +L + S++ G L KLT L+L + A + +LSA +L +L
Sbjct: 355 TALAASTSLTTLHLEHSRIGAEGAQALAANTKLTTLDLGYNDIGDAGVRTLSANATLVWL 414
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
++ R L D + +L L++ N I D+ L L +L++ S I + G
Sbjct: 415 SVRRNNLEDASAVSLAAGKTLTTLDISGNGIQDQGAKALAANPTLTTLDVSSNDIRNAGA 474
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333
L L L+L + ++ SG R L L S+ +S
Sbjct: 475 RALAANARLVSLDLRNNRMEESGTRALLANRTLSSLGVSL 514
>gi|395845618|ref|XP_003795524.1| PREDICTED: F-box/LRR-repeat protein 14 isoform 3 [Otolemur
garnettii]
Length = 387
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 94/305 (30%), Positives = 162/305 (53%), Gaps = 32/305 (10%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
++ +N++SL+ + C ++D GL H ++ + +L +L+ IT + A + L
Sbjct: 86 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 145
Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LK 183
L+L C+ I G L+ GL +L+SLN++ C ++D + L+G+T L+
Sbjct: 146 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLE 205
Query: 184 SLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-Q 239
L + C K+TD + ++ +GL L LLNL C ++ A L LS +GSL LNL C
Sbjct: 206 QLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDN 265
Query: 240 LSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGL-- 293
+SD G + +GSL++ L++ F +++ D+ L ++ +GL L+SL+L SC I D+G+
Sbjct: 266 ISDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINR 324
Query: 294 --VNLTGLCNL---KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 348
+ GL L +C+ ++D + HLS LT ++ T I+ L ++ L
Sbjct: 325 MVRQMHGLRTLNIGQCVRITDKGLELIA-EHLSQLTGIDLYGC--TRITKRGLERITQLP 381
Query: 349 SLKSL 353
LK L
Sbjct: 382 CLKRL 386
Score = 74.3 bits (181), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 95/302 (31%), Positives = 152/302 (50%), Gaps = 38/302 (12%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + G ++ + L +
Sbjct: 68 RGIRRVQILSLRRSLSYVIQGMA------NIESLNLSGCYNLTDNGLGHAFVQEIGSLRA 121
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LN+ C ITDS + ++ LK L++ CS +T++G+ + GLQ+L LNL C
Sbjct: 122 LNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSC 179
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL-K 273
LS +G + R + +GC +G ++ ++TD L H+ +
Sbjct: 180 R-------HLSDVGIGHLAGMTRS--AAEGC-----LGLEQLTLQDCQKLTDLSLKHISR 225
Query: 274 GLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLEL-SDTQVGSSGLRHLS-GLTNLESIN 330
GLT L LNL CG I D GL++L+ + +L+ L L S + +G+ HL+ G L ++
Sbjct: 226 GLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLD 285
Query: 331 LSFT-GISDGSLRKLA-GLSSLKSLNLDARQITDTGLAALT-SLTGLTHLDLFG-ARITD 386
+SF + D SL +A GL LKSL+L + I+D G+ + + GL L++ RITD
Sbjct: 286 VSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITD 345
Query: 387 SG 388
G
Sbjct: 346 KG 347
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 81/238 (34%), Positives = 126/238 (52%), Gaps = 44/238 (18%)
Query: 176 LSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
+ G+ N++SL +S C +TD+G+ + + +GSL LN
Sbjct: 86 IQGMANIESLNLSGCYNLTDNGLGH----------------------AFVQEIGSLRALN 123
Query: 235 LNRC-QLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIG 289
L+ C Q++D + ++ + L+VL LG + IT+ L+ + GL L+SLNL SC +
Sbjct: 124 LSLCKQITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLS 183
Query: 290 DEGLVNLTGLCN--------LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISD 338
D G+ +L G+ L+ L L D Q + L+H+S GLT L +NLSF G ISD
Sbjct: 184 DVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISD 243
Query: 339 GSLRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL 392
L L+ + SL+SLNL + I+DTG+ A+ SL L+ LD+ F ++ D AY+
Sbjct: 244 AGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYI 300
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 92/172 (53%), Gaps = 7/172 (4%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ + + L+ L+ +FC ISD GL HL + +L SL+ R + I+ G+
Sbjct: 215 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 274
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C ++ + +GL L+SL++ C+ D + + + L++
Sbjct: 275 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 334
Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYL 233
L I C ++TD G+ + + L +LT ++L GC +T L+ ++ L L L
Sbjct: 335 LNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPCLKRL 386
>gi|356551924|ref|XP_003544322.1| PREDICTED: F-box/LRR-repeat protein 3-like [Glycine max]
Length = 652
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 106/373 (28%), Positives = 177/373 (47%), Gaps = 58/373 (15%)
Query: 20 LTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGS-DVTD--SGLI 75
LT+V+ +A + L+ LCLG+ G+ D + IA + S L V L VTD +GLI
Sbjct: 139 LTDVAAKAIAEAVNLERLCLGRCKGITDLGIGCIAVRCSKLRHVGLRWCIRVTDFGAGLI 198
Query: 76 HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF-AGLINLV 134
+K C ++SLD ++ + I++ L H+ L +L L I G+ A ++
Sbjct: 199 AIK-CKEIRSLDLSY-LPITEKCLNHILQLEHLEDLILEHCLGIEDHGLATLQASCKSMK 256
Query: 135 KLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT 193
L+L +C I H G+ +L SG NL+ L +S S +
Sbjct: 257 MLNLSKCQNIGHIGIASLT------------------------SGSQNLEKLILSSSVIV 292
Query: 194 DSGIAY-LKGLQKLTLLNLEGCPVTAACLDSLSALG-SLFYLNLNRCQ-LSDDG------ 244
+ +A L+ +L + L+ C T + L ++ LG SL LNL++C ++D+
Sbjct: 293 TTDLAKCLQSFSRLQSVKLDSCLGTKSGLKAIGNLGASLKELNLSKCVGVTDENLPFLVQ 352
Query: 245 ----CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGL 299
EK + + + +T+ CL L SL ++SC + EG + G
Sbjct: 353 PHKDLEKLDITCCHTITHASISSLTNSCL-------RLTSLRMESCSLVSREGFL-FIGR 404
Query: 300 CN-LKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLA-GLSSLKSLNL- 355
C L+ L+++DT++ GL+ +S T L S+ L + I+D L+ +A S LK L+L
Sbjct: 405 CQLLEELDVTDTEIDDQGLQSISRCTKLSSLKLGICSMITDNGLKHIASSCSKLKQLDLY 464
Query: 356 DARQITDTGLAAL 368
+ +ITD G+ A+
Sbjct: 465 RSSRITDEGIVAI 477
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 92/188 (48%), Gaps = 33/188 (17%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNN 117
L +D++ +++ D GL + C+ L SL C I+D GL+H+ S L L R++
Sbjct: 408 LEELDVTDTEIDDQGLQSISRCTKLSSLKLGICSMITDNGLKHIASSCSKLKQLDLYRSS 467
Query: 118 AITAQGMKAFA------GLINLV--------------------KLDLERCTRIHG-GLVN 150
IT +G+ A A ++N+ L++ C RI GL N
Sbjct: 468 RITDEGIVAIALGCPSLEVVNIAYNSNTTDTSLEFLSKCQKLRTLEIRGCPRISPKGLSN 527
Query: 151 LKGLMK-LESLNIKWCNCITDSDMKPLSGLT-NLKSLQISCSKVTDSG---IAYLKGLQK 205
+ + LE L+IK C+ I D+ M L+ + NLK +++S VTD G +A + LQ
Sbjct: 528 IVARCRYLEMLDIKKCHKINDTGMIQLAQHSQNLKHIKLSYCSVTDVGLIALASISCLQH 587
Query: 206 LTLLNLEG 213
+++ ++EG
Sbjct: 588 ISIFHVEG 595
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 108/215 (50%), Gaps = 20/215 (9%)
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
C C+ ++D+ LT+ V IA L++L L +G +T + +
Sbjct: 125 CTCLVEADLSNRPDLTD----------VAAKAIAEAVNLERLCLGRCKG--ITDLGIGCI 172
Query: 225 SALGS-LFYLNLNRC-QLSDDGCEKFS-KIGSLKVLNLGFNEITDECLVHLKGLTNLESL 281
+ S L ++ L C +++D G + K ++ L+L + IT++CL H+ L +LE L
Sbjct: 173 AVRCSKLRHVGLRWCIRVTDFGAGLIAIKCKEIRSLDLSYLPITEKCLNHILQLEHLEDL 232
Query: 282 NLDSC-GIGDEGLVNLTGLC-NLKCLELSDTQ-VGSSGLRHL-SGLTNLESINLSFTGIS 337
L+ C GI D GL L C ++K L LS Q +G G+ L SG NLE + LS + I
Sbjct: 233 ILEHCLGIEDHGLATLQASCKSMKMLNLSKCQNIGHIGIASLTSGSQNLEKLILSSSVIV 292
Query: 338 DGSLRK-LAGLSSLKSLNLDARQITDTGLAALTSL 371
L K L S L+S+ LD+ T +GL A+ +L
Sbjct: 293 TTDLAKCLQSFSRLQSVKLDSCLGTKSGLKAIGNL 327
>gi|320165418|gb|EFW42317.1| tyrosine-protein kinase CSK [Capsaspora owczarzaki ATCC 30864]
Length = 953
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 90/280 (32%), Positives = 127/280 (45%), Gaps = 14/280 (5%)
Query: 113 FRRNNAITAQGMKAFAGLINLVKLDL--ERCTRIHGGLVNLKGLMKLESLNIKWCNCITD 170
+ +N IT+ AF GL L +L L + T I G GL L +L N IT
Sbjct: 5 YINSNPITSIPTNAFTGLTALTELSLLYNQITGISAG--TFTGLTALTALYFA-SNQITS 61
Query: 171 SDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLS-ALG 228
+GLT L L + +++T SG A+ L LT L+L+ +T+ + + L
Sbjct: 62 IPADAFTGLTALTHLSLQYNQITSISGTAF-TSLTALTYLSLQYNQITSISGTAFTFNLT 120
Query: 229 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 288
+L YL+L+ Q++ F+ + +L L+L N+IT + GLT L SL L + I
Sbjct: 121 ALTYLSLDSNQITSIPVGAFTGLTALTYLSLYTNQITSISVNAFTGLTALASLVLQNNQI 180
Query: 289 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI---NLSFTGISDGSLRKLA 345
TGL L L L Q+ S +GLT L + N T I G+ LA
Sbjct: 181 TSIPAAACTGLPALTELSLGINQITSIPADAFTGLTALTYLSVENNQITSIPAGAFTDLA 240
Query: 346 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
L+ L +LD QIT + T LT LT L L IT
Sbjct: 241 ALTDL---HLDGNQITSIPDFSFTGLTALTTLALQNNPIT 277
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 76/273 (27%), Positives = 119/273 (43%), Gaps = 8/273 (2%)
Query: 85 SLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCT 142
SL +N IS G GL+ LT+L F N IT+ AF GL L L L+ + T
Sbjct: 29 SLLYNQITGISAGTF---TGLTALTALYFASNQ-ITSIPADAFTGLTALTHLSLQYNQIT 84
Query: 143 RIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKG 202
I G L L L++++ + S LT L L + +++T + G
Sbjct: 85 SISG--TAFTSLTALTYLSLQYNQITSISGTAFTFNLTALTYLSLDSNQITSIPVGAFTG 142
Query: 203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 262
L LT L+L +T+ +++ + L +L L L Q++ + + +L L+LG N
Sbjct: 143 LTALTYLSLYTNQITSISVNAFTGLTALASLVLQNNQITSIPAAACTGLPALTELSLGIN 202
Query: 263 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 322
+IT GLT L L++++ I T L L L L Q+ S +G
Sbjct: 203 QITSIPADAFTGLTALTYLSVENNQITSIPAGAFTDLAALTDLHLDGNQITSIPDFSFTG 262
Query: 323 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355
LT L ++ L I+ GL + +L+L
Sbjct: 263 LTALTTLALQNNPITTLPPGLFKGLPNALALSL 295
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 69/245 (28%), Positives = 109/245 (44%), Gaps = 9/245 (3%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCTRIHGG--L 148
QI+ + GL+ LT LS + N IT+ AF L L L L+ + T I G
Sbjct: 58 QITSIPADAFTGLTALTHLSLQYNQ-ITSISGTAFTSLTALTYLSLQYNQITSISGTAFT 116
Query: 149 VNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTL 208
NL L L SL+ N IT + +GLT L L + +++T + GL L
Sbjct: 117 FNLTALTYL-SLD---SNQITSIPVGAFTGLTALTYLSLYTNQITSISVNAFTGLTALAS 172
Query: 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 268
L L+ +T+ + + L +L L+L Q++ + F+ + +L L++ N+IT
Sbjct: 173 LVLQNNQITSIPAAACTGLPALTELSLGINQITSIPADAFTGLTALTYLSVENNQITSIP 232
Query: 269 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 328
L L L+LD I + TGL L L L + + + GL N +
Sbjct: 233 AGAFTDLAALTDLHLDGNQITSIPDFSFTGLTALTTLALQNNPITTLPPGLFKGLPNALA 292
Query: 329 INLSF 333
++LS+
Sbjct: 293 LSLSY 297
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 77/177 (43%), Gaps = 1/177 (0%)
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 274
P+T+ ++ + L +L L+L Q++ F+ + +L L N+IT G
Sbjct: 10 PITSIPTNAFTGLTALTELSLLYNQITGISAGTFTGLTALTALYFASNQITSIPADAFTG 69
Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS-SGLRHLSGLTNLESINLSF 333
LT L L+L I T L L L L Q+ S SG LT L ++L
Sbjct: 70 LTALTHLSLQYNQITSISGTAFTSLTALTYLSLQYNQITSISGTAFTFNLTALTYLSLDS 129
Query: 334 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 390
I+ + GL++L L+L QIT + A T LT L L L +IT AA
Sbjct: 130 NQITSIPVGAFTGLTALTYLSLYTNQITSISVNAFTGLTALASLVLQNNQITSIPAA 186
>gi|168703296|ref|ZP_02735573.1| hypothetical protein GobsU_27441 [Gemmata obscuriglobus UQM 2246]
Length = 635
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 108/231 (46%), Gaps = 14/231 (6%)
Query: 169 TDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG 228
TD +++ + + ++ ++I+ VT +G+ +L L KL L ++ CPV + + L+A
Sbjct: 228 TDDELRVFTSIREVEHVRIANGDVTTAGLYHLPRLSKLKTLEIDSCPVDS--IAPLTACP 285
Query: 229 SLFYLNL-------NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 281
+L L + R ++D G K+ +L+ L L + EI + L L L L SL
Sbjct: 286 NLTELVITAEAGTERRAVVNDTGTAGLEKLTNLRRLKLDWCEIGGQTLRRLAALHRLRSL 345
Query: 282 NL---DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
L I L LTGL L+ L L + L ++ L L ++ LS G D
Sbjct: 346 ELMLFWGQHISGTDLAELTGLLELEKLTLH--PIPPWALEYIGPLRTLRTLTLSLFGEGD 403
Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 389
R LA L++L L L +TD L L +L L L + + +T +GA
Sbjct: 404 SEFRHLAQLTNLCWLKLTGPAVTDCALGHLRTLRSLRTLHISESAVTATGA 454
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/257 (26%), Positives = 110/257 (42%), Gaps = 28/257 (10%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
V ++ DVT +GL HL S L++L+ + C S + L NLT L ITA
Sbjct: 244 VRIANGDVTTAGLYHLPRLSKLKTLEIDSCPVDS---IAPLTACPNLTEL------VITA 294
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
+ ++N G L+ L L L + WC I ++ L+ L
Sbjct: 295 EAGTERRAVVN------------DTGTAGLEKLTNLRRLKLDWCE-IGGQTLRRLAALHR 341
Query: 182 LKSLQISC---SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
L+SL++ ++ + +A L GL +L L L P+ L+ + L +L L L+
Sbjct: 342 LRSLELMLFWGQHISGTDLAELTGLLELEKLTLH--PIPPWALEYIGPLRTLRTLTLSLF 399
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
D +++ +L L L +TD L HL+ L +L +L++ + G + L
Sbjct: 400 GEGDSEFRHLAQLTNLCWLKLTGPAVTDCALGHLRTLRSLRTLHISESAVTATGALTLAH 459
Query: 299 LCNLKCLELSDTQVGSS 315
+ +SDT V S
Sbjct: 460 QLPAAKI-ISDTVVAWS 475
>gi|83747318|ref|ZP_00944359.1| Leucine-rich repeat family protein [Ralstonia solanacearum UW551]
gi|207739111|ref|YP_002257504.1| type III effector protein gala2 [Ralstonia solanacearum IPO1609]
gi|83726018|gb|EAP73155.1| Leucine-rich repeat family protein [Ralstonia solanacearum UW551]
gi|206592484|emb|CAQ59390.1| type III effector protein gala2 [Ralstonia solanacearum IPO1609]
Length = 978
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 98/349 (28%), Positives = 155/349 (44%), Gaps = 4/349 (1%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR 103
+ D+ + +AS +SL S++LSG+ + ++G L + L +L+ + I D G++ L
Sbjct: 612 IGDREVQALASS-TSLTSLNLSGNRIGNAGAQALGRNTVLTALNVS-ANPIGDAGVQALA 669
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 163
+LTSL R I G+ A A L LD+ L L SL
Sbjct: 670 DSRSLTSLELR-GIGIGEAGIAALASNTVLRSLDISSNDLSEQSAAELARNQTLASLKAN 728
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
C +T+S + L+ + +L++L++ + + D+G+ + L LNL P+T L
Sbjct: 729 ACG-LTNSMAQQLARIRSLRTLEVGSNSIGDTGVLAIARNASLRTLNLSHNPITLQGLRP 787
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
L +L L+++ D G SK +L L LGFN I L L SL+L
Sbjct: 788 LELSRTLTSLDVSGIGCGDRGALLLSKNRALTSLKLGFNGIGSAGAQGLAANRTLISLDL 847
Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
I + L L L +SD ++ L+ L S+++S +S + R
Sbjct: 848 RGNTIDVDAAKALANTGCLTSLNVSDCKLDDEAASALAESLTLTSLDVSVNRLSGQAARA 907
Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
LAG ++L SLN+ I G AL LT LD I ++GA L
Sbjct: 908 LAGNATLTSLNISHNHIGPDGAQALAESPSLTSLDARANGIGEAGARAL 956
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 98/339 (28%), Positives = 157/339 (46%), Gaps = 7/339 (2%)
Query: 57 SSLLSVDLSG---SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ +DLSG S V+++GL L L+SLD + +I D ++ L ++LTSL+
Sbjct: 574 PSVRHLDLSGCTGSAVSEAGLAVLARLP-LESLDLS-GTRIGDREVQALASSTSLTSLNL 631
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
N I G +A L L++ G+ L L SL ++ I ++ +
Sbjct: 632 S-GNRIGNAGAQALGRNTVLTALNVSANPIGDAGVQALADSRSLTSLELRGIG-IGEAGI 689
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
L+ T L+SL IS + +++ A L Q L L C +T + L+ + SL L
Sbjct: 690 AALASNTVLRSLDISSNDLSEQSAAELARNQTLASLKANACGLTNSMAQQLARIRSLRTL 749
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+ + D G ++ SL+ LNL N IT + L L+ L SL++ G GD G
Sbjct: 750 EVGSNSIGDTGVLAIARNASLRTLNLSHNPITLQGLRPLELSRTLTSLDVSGIGCGDRGA 809
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
+ L+ L L+L +GS+G + L+ L S++L I + + LA L SL
Sbjct: 810 LLLSKNRALTSLKLGFNGIGSAGAQGLAANRTLISLDLRGNTIDVDAAKALANTGCLTSL 869
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
N+ ++ D +AL LT LD+ R++ A L
Sbjct: 870 NVSDCKLDDEAASALAESLTLTSLDVSVNRLSGQAARAL 908
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 72/285 (25%), Positives = 128/285 (44%), Gaps = 4/285 (1%)
Query: 43 GVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
G+ + + +AS + L S+D+S +D+++ L L SL N C +++ + L
Sbjct: 683 GIGEAGIAALASN-TVLRSLDISSNDLSEQSAAELARNQTLASLKANAC-GLTNSMAQQL 740
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
+ +L +L +N+I G+ A A +L L+L GL L+ L SL++
Sbjct: 741 ARIRSLRTLEVG-SNSIGDTGVLAIARNASLRTLNLSHNPITLQGLRPLELSRTLTSLDV 799
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
C D LS L SL++ + + +G L + L L+L G +
Sbjct: 800 SGIGC-GDRGALLLSKNRALTSLKLGFNGIGSAGAQGLAANRTLISLDLRGNTIDVDAAK 858
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282
+L+ G L LN++ C+L D+ ++ +L L++ N ++ + L G L SLN
Sbjct: 859 ALANTGCLTSLNVSDCKLDDEAASALAESLTLTSLDVSVNRLSGQAARALAGNATLTSLN 918
Query: 283 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 327
+ IG +G L +L L+ +G +G R L T ++
Sbjct: 919 ISHNHIGPDGAQALAESPSLTSLDARANGIGEAGARALENNTRMQ 963
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 64/122 (52%), Gaps = 4/122 (3%)
Query: 276 TNLESLNLDSC---GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 332
++ L+L C + + GL L L L+ L+LS T++G ++ L+ T+L S+NLS
Sbjct: 574 PSVRHLDLSGCTGSAVSEAGLAVLARLP-LESLDLSGTRIGDREVQALASSTSLTSLNLS 632
Query: 333 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
I + + L + L +LN+ A I D G+ AL LT L+L G I ++G A L
Sbjct: 633 GNRIGNAGAQALGRNTVLTALNVSANPIGDAGVQALADSRSLTSLELRGIGIGEAGIAAL 692
Query: 393 RS 394
S
Sbjct: 693 AS 694
Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 66/122 (54%), Gaps = 2/122 (1%)
Query: 267 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 326
E + +L GL LESLN+ IGD+G L +L+ L ++ +G++G R L+ L
Sbjct: 145 EAIAYLAGLP-LESLNVAGADIGDDGARLLAANPSLRALNAANGGIGAAGARALAESPVL 203
Query: 327 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
S++L+ GI D R LA SL +L + +TD G AL LT LDL G IT+
Sbjct: 204 ASLDLTRNGIGDEGARALADSRSLTNLAVLNCLVTDVGARALAGNGTLTALDL-GNLITE 262
Query: 387 SG 388
+G
Sbjct: 263 TG 264
>gi|168052598|ref|XP_001778727.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669846|gb|EDQ56425.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 643
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 105/407 (25%), Positives = 179/407 (43%), Gaps = 27/407 (6%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIA--SQGSS 58
MLP +++ ++FN L+ S L+ + F+ LQ++ L V+ +WM + +
Sbjct: 41 MLPSELAHELFNSLLQSHLLSATLIGLFQS-NLQEVNLSGEATVDGEWMAYLGGCRHLRA 99
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L + D +T++ + L + ++ LD C +ISD + H+ L L
Sbjct: 100 LRATDCKA--LTNNAIRQLTGLTAMEELDLARCRKISDDAVPHILSFKMLRKLGLAETGL 157
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
T + GL LV LDL C L++ + L LE L++ W + +T+ + LS
Sbjct: 158 TTKGLLLL-PGLSRLVLLDLGGCPVTDADLISFQALGMLEHLDL-WGSKVTNMGARCLSS 215
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
LK L ++ + VT L ++E DSL L LF L+
Sbjct: 216 FKTLKYLNLAMTAVTAIPQLNSLLSLNLCNCDVESIYGDGTFSDSL--LRELF---LSGA 270
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITD-ECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
LS S +L +L+L + + D + VH+ L L+L + G+ +E ++
Sbjct: 271 SLSLKDVISGSNTRNLHLLDLASSRVNDLDAFVHIP---KLAILDLRATGLTNELMLKFQ 327
Query: 298 GLC-NLKCLELSDTQVGSSGLRHLSG-LTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355
GL NL+ ++LS T++ S G+ ++G N+E ++L+ T + D L L+SLNL
Sbjct: 328 GLGDNLRWIDLSYTKIDSEGVGAIAGHAPNVEQLSLNHTPVDDNVFIYLVHFPVLQSLNL 387
Query: 356 DARQITD---------TGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
++ ++ L+ L L HL R T G A L
Sbjct: 388 GGSKVNGFMTVGSEEFQQISVLSYLEQLQHLRRLDMRYTGVGDAALH 434
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 80/332 (24%), Positives = 145/332 (43%), Gaps = 30/332 (9%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
+DL G VTD+ LI + L+ LD + ++++ G L L L+ A+TA
Sbjct: 174 LDLGGCPVTDADLISFQALGMLEHLDL-WGSKVTNMGARCLSSFKTLKYLNLAM-TAVTA 231
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMK---LESLNIKWCNCITDSDMKPLSG 178
+NL D+E I+G L++ L ++ + I+ S+ +
Sbjct: 232 IPQLNSLLSLNLCNCDVE---SIYGDGTFSDSLLRELFLSGASLSLKDVISGSNTR---- 284
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG-SLFYLNLNR 237
NL L ++ S+V D + + KL +L+L +T + LG +L +++L+
Sbjct: 285 --NLHLLDLASSRVND--LDAFVHIPKLAILDLRATGLTNELMLKFQGLGDNLRWIDLSY 340
Query: 238 CQLSDDGCEKFS-KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
++ +G + +++ L+L + D ++L L+SLNL G +
Sbjct: 341 TKIDSEGVGAIAGHAPNVEQLSLNHTPVDDNVFIYLVHFPVLQSLNL--------GGSKV 392
Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
G + E V L +L L +L +++ +TG+ D +L L L L L++
Sbjct: 393 NGFMTVGSEEFQQISV----LSYLEQLQHLRRLDMRYTGVGDAALHGLKNLVQLSHLHIH 448
Query: 357 ARQITDTGLAALTSLTGLTHLDLFGARITDSG 388
+ ++D L L+S L L + GA IT G
Sbjct: 449 SNSLSDECLQQLSSFPNLVCLGIGGATITADG 480
Score = 42.7 bits (99), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 78/179 (43%), Gaps = 14/179 (7%)
Query: 168 ITDSDMKPLSGL-TNLKSLQISCSKVTDSGIAYLKG-LQKLTLLNLEGCPVTAACLDSLS 225
+T+ M GL NL+ + +S +K+ G+ + G + L+L PV L
Sbjct: 318 LTNELMLKFQGLGDNLRWIDLSYTKIDSEGVGAIAGHAPNVEQLSLNHTPVDDNVFIYLV 377
Query: 226 ALGSLFYLNLNRCQLS---DDGCEKFSKIG---------SLKVLNLGFNEITDECLVHLK 273
L LNL +++ G E+F +I L+ L++ + + D L LK
Sbjct: 378 HFPVLQSLNLGGSKVNGFMTVGSEEFQQISVLSYLEQLQHLRRLDMRYTGVGDAALHGLK 437
Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 332
L L L++ S + DE L L+ NL CL + + + GL + LE ++L+
Sbjct: 438 NLVQLSHLHIHSNSLSDECLQQLSSFPNLVCLGIGGATITADGLLSYKPPSLLEELDLT 496
Score = 41.6 bits (96), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 68/146 (46%), Gaps = 27/146 (18%)
Query: 276 TNLESLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSF 333
+NL+ +NL D E + L G +L+ L +D + + ++ +R L+GLT +E ++L+
Sbjct: 70 SNLQEVNLSGEATVDGEWMAYLGGCRHLRALRATDCKALTNNAIRQLTGLTAMEELDLAR 129
Query: 334 -TGISDGSLRKLAGLSSLKSLNLDAR------------------------QITDTGLAAL 368
ISD ++ + L+ L L +TD L +
Sbjct: 130 CRKISDDAVPHILSFKMLRKLGLAETGLTTKGLLLLPGLSRLVLLDLGGCPVTDADLISF 189
Query: 369 TSLTGLTHLDLFGARITDSGAAYLRS 394
+L L HLDL+G+++T+ GA L S
Sbjct: 190 QALGMLEHLDLWGSKVTNMGARCLSS 215
>gi|219821285|gb|ACL37768.1| internalin A [Listeria monocytogenes]
gi|219821315|gb|ACL37788.1| internalin A [Listeria monocytogenes]
gi|219821321|gb|ACL37792.1| internalin A [Listeria monocytogenes]
gi|219821327|gb|ACL37796.1| internalin A [Listeria monocytogenes]
gi|219821345|gb|ACL37808.1| internalin A [Listeria monocytogenes]
Length = 742
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 101/316 (31%), Positives = 157/316 (49%), Gaps = 34/316 (10%)
Query: 74 LIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINL 133
+ LKD + L + N QI+D + L L+NLT L+ NN IT + L NL
Sbjct: 55 ITPLKDLTKLVDIVMNNN-QITD--ISPLANLTNLTGLTLF-NNQIT--DIDPLKNLTNL 108
Query: 134 VKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT 193
+L+L T + L GL L+ L+ N +TD +KPL+ LT L+ L IS +KV+
Sbjct: 109 NRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPLANLTTLERLDISSNKVS 162
Query: 194 DSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSK 250
D + L KLT NLE T + ++ LG +L L+LN QL D G +
Sbjct: 163 DISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LAS 213
Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 310
+ +L L++ N+I++ L L GLT L L L I + + + GL L LEL +
Sbjct: 214 LTNLTSLDVANNQISN--LAPLSGLTKLTELELGYNQISN--ISPIEGLTALTSLELHEN 269
Query: 311 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 370
Q+ + +S L NL + L F ISD + ++ L+ L+ L +++D +++L +
Sbjct: 270 QL--EDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLAN 323
Query: 371 LTGLTHLDLFGARITD 386
LT + L +I+D
Sbjct: 324 LTNINWLSAAHNQISD 339
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 78/144 (54%), Gaps = 14/144 (9%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N GFN++TD + LK LT L + +++ I D + L L NL
Sbjct: 34 DGLEY---LNNLTQINFGFNQLTD--ITPLKDLTKLVDIVMNNNQITD--ISPLANLTNL 86
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + + L LTNL + LS ISD + L+GL++L+ L+ Q+TD
Sbjct: 87 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQLSF-GNQVTD 141
Query: 363 TGLAALTSLTGLTHLDLFGARITD 386
L L +LT L LD+ +++D
Sbjct: 142 --LKPLANLTTLERLDISSNKVSD 163
>gi|395539122|ref|XP_003771522.1| PREDICTED: F-box/LRR-repeat protein 13, partial [Sarcophilus
harrisii]
Length = 509
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 113/408 (27%), Positives = 181/408 (44%), Gaps = 49/408 (12%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDC-SNLQSLDFNFC 91
LQ+L + Q G+ND M + SL+ ++++ +D+++ L L C NLQ L +C
Sbjct: 83 LQELNVSQCEGLNDDAMRYVLEGCPSLIHLNIAHTDISNGTLKLLSRCFPNLQKLSLAYC 142
Query: 92 IQISDGGLEHL---RGLSNLTSLSFRRNNAITAQGMKAFA----GLINLVKLDL------ 138
++ GL +L +G +T+L I+ QG K A G+ +LV D+
Sbjct: 143 RNFTEKGLLYLNLGKGCHKITNLDLSGCTQISVQGFKDIASSCTGIKHLVINDMPTLTDN 202
Query: 139 ------ERCTRI---------HGGLVNLKGLM--KLESLNIKWCNCITDSDMKPL-SGLT 180
ERC I H K L L + ++ N ITD K +
Sbjct: 203 CIKALVERCKSITSVIFIGSPHLSDTAFKYLTDCSLNKVRVEGNNRITDLTFKLMDKHYG 262
Query: 181 NLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG-----SLFYLN 234
+L + ++ C ++TD + + L+ L +LNL C + + S LG L LN
Sbjct: 263 DLSHIYMTDCERITDVSLKSIANLKNLVVLNLANC-IRIGDVGLRSFLGGPSSSKLRELN 321
Query: 235 LNRC-QLSD-DGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
L C Q+SD E + SL LNL ++TD + + L NL S++L I DE
Sbjct: 322 LTHCAQISDLSLAEMGERCRSLTYLNLRSCTQLTDCGIEFITKLPNLISIDLSVTAITDE 381
Query: 292 GLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTN-LESINLSFTGISDGSLRKLAGLSS 349
L +L+ LK L +S+ + + SG++H T LE +++SF G + K
Sbjct: 382 ALTSLSNHKKLKELSVSECEFITDSGVKHFCQSTPILEHLDVSFCLKLSGEILKALSTKC 441
Query: 350 LKSLNLD---ARQITDTGLAALTSLTGLTH-LDLFG-ARITDSGAAYL 392
L+ +L ++ D + L+ H LD+ G R+TD YL
Sbjct: 442 LRLTSLSIAGCPKMNDLAIRILSKKCHYLHILDVSGCVRLTDKAIEYL 489
>gi|343413823|emb|CCD21194.1| leucine-rich repeat protein, putative [Trypanosoma vivax Y486]
Length = 707
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 103/309 (33%), Positives = 160/309 (51%), Gaps = 27/309 (8%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
L + S+L++LD + C I+D + L LS+L +L IT + + L +L L
Sbjct: 177 LSELSSLRTLDLSHCTGITD--VSPLSKLSSLRTLDLSHCTGIT--DVSPLSKLSSLRTL 232
Query: 137 DLERCTRIHGGLVNLKGLMKLESL-NIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTD 194
DL CT G+ ++ L KL SL + +C +D+ PLS L++L++L +S C+ +TD
Sbjct: 233 DLSHCT----GITDVSPLSKLSSLRTLDLSHCTGITDVSPLSELSSLRTLGLSHCTGITD 288
Query: 195 SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL 254
++ L L L L+L C + LS L SL L+L+ C D SK+ SL
Sbjct: 289 --VSPLSELSSLRTLDLSHC-TGITDVSPLSELSSLRTLDLSHCTGITD-VSPLSKLSSL 344
Query: 255 KVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQV 312
+ L + ITD + L L++L +L C GI D + L+ L L+ L LS
Sbjct: 345 RTLYFLYCTGITD--VSPLSELSSLRTLYFSHCTGITD--VSPLSELSGLRMLYLSHCT- 399
Query: 313 GSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTS 370
G + + LS ++L ++ S TGI+D S L+ LSSL++L+L ITD ++ L+
Sbjct: 400 GITDVSPLSVFSSLRMLDFSHCTGITDVS--PLSKLSSLRTLDLSHCTGITD--VSPLSE 455
Query: 371 LTGLTHLDL 379
L+ L LDL
Sbjct: 456 LSSLHTLDL 464
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 88/296 (29%), Positives = 135/296 (45%), Gaps = 52/296 (17%)
Query: 5 DISQ-QIFNELV---YSRC--LTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSS 58
D+S +F+ L +S C +T+VS + +L+ L L G+ D S+ SS
Sbjct: 403 DVSPLSVFSSLRMLDFSHCTGITDVS-PLSKLSSLRTLDLSHCTGITDVSP---LSELSS 458
Query: 59 LLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
L ++DLS + +TD + L + S+L++LD + C I+D
Sbjct: 459 LHTLDLSHCTGITD--VSPLSELSSLRTLDLSHCTGITD--------------------- 495
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
+ + L +L LDL CT I + L L L +L++ C IT D+ PLS
Sbjct: 496 ------VSPLSELSSLCTLDLSHCTGI-TDVSPLSELSSLRTLDLSHCTGIT--DVSPLS 546
Query: 178 GLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
++L +L +S C+ +TD ++ L L L +LNL C + LS SL L+L+
Sbjct: 547 EFSSLHTLDLSHCTGITD--VSPLSELSSLRMLNLSHC-TGITDVSPLSEFSSLHTLDLS 603
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGD 290
C D SK+ SL +L L ITD + L + E L L +C GI D
Sbjct: 604 HCTGITD-VSPLSKLSSLHILGLSHCTGITD--VSPLTTIIGFEKLYLSNCTGITD 656
>gi|51850115|dbj|BAD42399.1| leucine-rich repeat protein [Ralstonia solanacearum]
Length = 1035
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 104/339 (30%), Positives = 156/339 (46%), Gaps = 7/339 (2%)
Query: 57 SSLLSVDLSG---SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ +DLSG S V+++GL +L L SLD + I + G + L ++LTSL+
Sbjct: 631 PSVRHLDLSGCTGSAVSEAGLAYLARLP-LASLDLSDT-GIGNRGAQALAASASLTSLNL 688
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
N I G +A L LD+ + G L L SL ++ I D +
Sbjct: 689 S-GNGIGTAGAEALGRNTVLTALDISANPIRNAGAQALASSRSLTSLELR-DTGIEDGGI 746
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
+ L+ T L+SL IS + ++D A L + LT L GC +T L+ + SL L
Sbjct: 747 EALAANTVLRSLDISGNDLSDQSAAALAANRTLTSLKANGCGLTNDMAQQLARIRSLRTL 806
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+ + D G ++ SL+ LNL N IT + L L L+SL++ G GD G
Sbjct: 807 EVGSNSIGDAGVLTIARNASLRSLNLSRNSITPQGLYPLALSRTLKSLDVSRIGCGDRGA 866
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
+ L+G L L+L ++ S G R L+ L S++L I + R LA L SL
Sbjct: 867 LLLSGNRALTSLKLGFNRISSEGARRLAANRTLVSLDLRGNTIDVAAARALANAEPLASL 926
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
N+ ++ D AL LT LD+ R++ A L
Sbjct: 927 NVSDCRLDDAVACALAESRTLTSLDVSWNRLSHRAARAL 965
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 87/316 (27%), Positives = 138/316 (43%), Gaps = 22/316 (6%)
Query: 14 LVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSG 73
L SR LT SLE RD G+ D ++ +A+ + L S+D+SG+D++D
Sbjct: 725 LASSRSLT--SLE-LRDT-----------GIEDGGIEALAAN-TVLRSLDISGNDLSDQS 769
Query: 74 LIHLKDCSNLQSLDFNFCIQISDGG--LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLI 131
L L SL N C +D L +R L L S N+I G+ A
Sbjct: 770 AAALAANRTLTSLKANGCGLTNDMAQQLARIRSLRTLEVGS----NSIGDAGVLTIARNA 825
Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 191
+L L+L R + GL L L+SL++ C D LSG L SL++ ++
Sbjct: 826 SLRSLNLSRNSITPQGLYPLALSRTLKSLDVSRIGC-GDRGALLLSGNRALTSLKLGFNR 884
Query: 192 VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI 251
++ G L + L L+L G + A +L+ L LN++ C+L D ++
Sbjct: 885 ISSEGARRLAANRTLVSLDLRGNTIDVAAARALANAEPLASLNVSDCRLDDAVACALAES 944
Query: 252 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 311
+L L++ +N ++ L L SL++ IG EG L +L L+ +
Sbjct: 945 RTLTSLDVSWNRLSHRAARALADNPVLASLDISHNDIGPEGAQALADSASLTILDARANR 1004
Query: 312 VGSSGLRHLSGLTNLE 327
+G +G R L T +
Sbjct: 1005 IGEAGARLLEANTRMR 1020
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 65/217 (29%), Positives = 92/217 (42%), Gaps = 47/217 (21%)
Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
D + LSGL + L+ +LKG TL +L+ P T L
Sbjct: 94 DRRALSGLRDHPHLES----------VHLKG--DFTLADLKALPTT------------LR 129
Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
+L+L+ C GS K + +L GL LESLN+ IGD
Sbjct: 130 HLDLSEC------------TGSAKSF---------RAIAYLAGLP-LESLNVAGAEIGDG 167
Query: 292 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 351
G L +LK L + + +SG R L+ LES++L+ I D + LAG SL+
Sbjct: 168 GARLLAANPSLKSLNAASGGISASGARMLAESPTLESLDLTQNAIGDAGAQALAGSRSLR 227
Query: 352 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 388
L + +TD G AL L LDL G +T++G
Sbjct: 228 HLAVRNGLVTDVGTRALALNPALVSLDL-GNLVTETG 263
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 70/253 (27%), Positives = 108/253 (42%), Gaps = 17/253 (6%)
Query: 133 LVKLDLERCT---RIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISC 189
L LDL CT + + L GL LESLN+ I D + L+ +LKSL +
Sbjct: 128 LRHLDLSECTGSAKSFRAIAYLAGL-PLESLNVAGAE-IGDGGARLLAANPSLKSLNAAS 185
Query: 190 SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 249
++ SG L L L+L + A +L+ SL +L + ++D G +
Sbjct: 186 GGISASGARMLAESPTLESLDLTQNAIGDAGAQALAGSRSLRHLAVRNGLVTDVGTRALA 245
Query: 250 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG--IGDEGLVNLTGLCNLKCLEL 307
+L L+LG N +T+ +E D I +G L +LK L +
Sbjct: 246 LNPALVSLDLG-NLVTETG-------NQVEQDGYDKTANNITAQGAWALAQNRSLKSLSV 297
Query: 308 SDTQV-GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ-ITDTGL 365
+ G G+R L+ L S+N++FT ++ S + LA L SL++ + D G
Sbjct: 298 QGNDLCGDDGVRALARNRTLTSLNVAFTNMTSASAKALADNPVLTSLSVRWNYGLDDAGA 357
Query: 366 AALTSLTGLTHLD 378
L LT LD
Sbjct: 358 MELARSRSLTSLD 370
>gi|434385223|ref|YP_007095834.1| Leucine Rich Repeat (LRR)-containing protein [Chamaesiphon minutus
PCC 6605]
gi|428016213|gb|AFY92307.1| Leucine Rich Repeat (LRR)-containing protein [Chamaesiphon minutus
PCC 6605]
Length = 362
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 74/207 (35%), Positives = 116/207 (56%), Gaps = 19/207 (9%)
Query: 171 SDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 229
SD++P++ LTNL+ L + +TD + +A LK L L + + L L LGS
Sbjct: 98 SDLRPIASLTNLRKLSLYSHNITDLTPLANLKQLDALV--------INSNKLTDLKPLGS 149
Query: 230 LFYLNLNRCQLSD-DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 288
L LN + + +K+ +LK L L ++ I D + +K LT L ++ I
Sbjct: 150 LNNLNDLGLLGRNIVNIKPIAKLTNLKKLTLWYSSIQD--IKAVKNLTQLTEVSFIDTKI 207
Query: 289 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 348
D L L L +L LE+++++V + +R LSGLTNL+ I L+ IS+ ++ LA L+
Sbjct: 208 AD--LSPLANLKSLTTLEVTNSKV--TDIRALSGLTNLKRIVLNNNQISN--IQPLARLT 261
Query: 349 SLKSLNLDARQITD-TGLAALTSLTGL 374
+LKSLNL+ +I++ T LA LTSLTG+
Sbjct: 262 NLKSLNLNFNRISNLTPLAGLTSLTGI 288
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 89/288 (30%), Positives = 134/288 (46%), Gaps = 29/288 (10%)
Query: 92 IQISD---GGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGL 148
IQI D LE LS T L ++ A L NL KL L +
Sbjct: 69 IQIPDCRAAALE----LSQRTELLTSSPTPADISDLRPIASLTNLRKLSLY-----SHNI 119
Query: 149 VNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQKLT 207
+L L L+ L+ N +D+KPL L NL L + + + IA L L+KLT
Sbjct: 120 TDLTPLANLKQLDALVINSNKLTDLKPLGSLNNLNDLGLLGRNIVNIKPIAKLTNLKKLT 179
Query: 208 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 267
L + A + +L+ L + +++ LS + + SL L + +++TD
Sbjct: 180 LWYSSIQDIKA--VKNLTQLTEVSFIDTKIADLSP-----LANLKSLTTLEVTNSKVTD- 231
Query: 268 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 327
+ L GLTNL+ + L++ I + + L L NLK L L+ ++ S L L+GLT+L
Sbjct: 232 -IRALSGLTNLKRIVLNNNQISN--IQPLARLTNLKSLNLNFNRI--SNLTPLAGLTSLT 286
Query: 328 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT-GLAALTSLTGL 374
INLS I D ++ +A L+ L LNL+ +IT+ LA L L L
Sbjct: 287 GINLSDNQIVD--IQPIAALTQLVGLNLNNNKITNIKPLAKLQKLETL 332
>gi|223698886|gb|ACN19164.1| internalin A [Listeria monocytogenes]
Length = 715
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 106/333 (31%), Positives = 168/333 (50%), Gaps = 36/333 (10%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI G + L L+NLT L+ N
Sbjct: 13 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QI--GDITPLANLTNLTGLTLF-N 66
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 67 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 118
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 119 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 171
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 172 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 225
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
L GL L LEL++ Q+ + +S L NL + L F ISD + ++ L+ L+ L
Sbjct: 226 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRL 281
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
+++D +++L +LT + L +I+D
Sbjct: 282 FFYNNKVSD--VSSLANLTNINWLSAGHNQISD 312
>gi|431892162|gb|ELK02609.1| F-box/LRR-repeat protein 14 [Pteropus alecto]
Length = 412
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 93/301 (30%), Positives = 151/301 (50%), Gaps = 41/301 (13%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + G ++ + L +
Sbjct: 68 RGIRRVQILSLRRSLSYVIQGMA------NIESLNLSGCYNLTDNGLGHAFVQEISSLRA 121
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LN+ C ITDS + ++ LK L++ CS +T++G+ + GLQ+L LNL C
Sbjct: 122 LNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSC 179
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL-K 273
LS +G + R + +GC +G ++ ++TD L H+ +
Sbjct: 180 R-------HLSDVGIGHLAGMTRS--AAEGC-----LGLEQLTLQDCQKLTDLSLKHISR 225
Query: 274 GLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLEL-SDTQVGSSGLRHLSGLTNLESINL 331
GLT L LNL C GI D GL++L+ + +L+ L L S + +G+ HL+ + S+ L
Sbjct: 226 GLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLA----MGSLRL 281
Query: 332 SFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALTS-LTGLTHLDLFG-ARITDS 387
S +SD + R + + L++LN+ +ITD GL + L+ LT +DL+G RIT
Sbjct: 282 SGLDVSDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKR 341
Query: 388 G 388
G
Sbjct: 342 G 342
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 90/306 (29%), Positives = 153/306 (50%), Gaps = 45/306 (14%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
++ +N++SL+ + C ++D GL H ++ +S+L +L+ IT + A + L
Sbjct: 86 IQGMANIESLNLSGCYNLTDNGLGHAFVQEISSLRALNLSLCKQITDSSLGRIAQYLKGL 145
Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LK 183
L+L C+ I G L+ GL +L+SLN++ C ++D + L+G+T L+
Sbjct: 146 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLE 205
Query: 184 SLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-Q 239
L + C K+TD + ++ +GL L LLNL C ++ A L LS +GSL LNL C
Sbjct: 206 QLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDN 265
Query: 240 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL-KGLTNLESLNLDSC-GIGDEGLVNLT 297
+SD G + +GSL++ L +++D+ + + + + L +LN+ C I D+GL +
Sbjct: 266 ISDTGIMHLA-MGSLRLSGL---DVSDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIA 321
Query: 298 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 357
HLS LT ++ T I+ L ++ L LK LNL
Sbjct: 322 --------------------EHLSQLTGIDLYGC--TRITKRGLERITQLPCLKVLNLGL 359
Query: 358 RQITDT 363
Q+TD+
Sbjct: 360 WQMTDS 365
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 89/201 (44%), Gaps = 54/201 (26%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ + + L+ L+ +FC ISD GL HL + +L SL+ R + I+ G+
Sbjct: 215 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 274
Query: 128 AGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
A G ++L L++ D + + + L++L I
Sbjct: 275 A-----------------------MGSLRLSGLDVS-----DDGINRMVRQMHGLRTLNI 306
Query: 188 -SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 245
C ++TD G+ + + L +LT ++L GC +++ G
Sbjct: 307 GQCVRITDKGLELIAEHLSQLTGIDLYGCT-----------------------RITKRGL 343
Query: 246 EKFSKIGSLKVLNLGFNEITD 266
E+ +++ LKVLNLG ++TD
Sbjct: 344 ERITQLPCLKVLNLGLWQMTD 364
Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 73/144 (50%), Gaps = 11/144 (7%)
Query: 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFR 114
G LL++ G ++D+GL+HL +L+SL+ C ISD G+ HL G L+ L
Sbjct: 229 GLRLLNLSFCGG-ISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLD-- 285
Query: 115 RNNAITAQGM-KAFAGLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDS 171
++ G+ + + L L++ +C RI + L + L +L +++ C IT
Sbjct: 286 ----VSDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKR 341
Query: 172 DMKPLSGLTNLKSLQISCSKVTDS 195
++ ++ L LK L + ++TDS
Sbjct: 342 GLERITQLPCLKVLNLGLWQMTDS 365
>gi|320169490|gb|EFW46389.1| hypothetical protein CAOG_04357 [Capsaspora owczarzaki ATCC 30864]
Length = 620
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 81/284 (28%), Positives = 127/284 (44%), Gaps = 5/284 (1%)
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINL--VKLDLERCTRIHGGLVNLKGLMKLESLN 161
G+ T + NN I + AF+GL L + LD + T I L LE L
Sbjct: 54 GIPVTTRALYLSNNQIASIPAYAFSGLTALTWLYLDSNQITSISASA--FSDLTSLEQLR 111
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 221
++ N IT +GLT + L ++ +++T GL L L L +T+
Sbjct: 112 MEE-NQITSISDGAFTGLTAVLELGLNRNQITSISANAFTGLTGLHFLELSNNQLTSIPS 170
Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 281
+++ +L L L + +++ F+ + +LK L L N IT +GL+ L L
Sbjct: 171 SVFASVTTLLDLLLYKNRITSIPTSAFTTLTALKTLRLYDNPITSISANAFEGLSALTVL 230
Query: 282 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 341
+L S I + TGL L+ L L Q+ + +GLT ++++ L I+ S
Sbjct: 231 HLSSNHITSILPSSFTGLTALEALLLDKNQISNIPASAFTGLTAMQTLYLDSNRITSIST 290
Query: 342 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
GL++L + LD+ QIT A T LT LT+L L G T
Sbjct: 291 NAFTGLTALTYMYLDSNQITRIPANAFTGLTALTYLTLDGNPFT 334
Score = 45.4 bits (106), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 75/178 (42%), Gaps = 12/178 (6%)
Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 271
G PVT L YL+ N Q++ FS + +L L L N+IT
Sbjct: 53 SGIPVTTRAL----------YLSNN--QIASIPAYAFSGLTALTWLYLDSNQITSISASA 100
Query: 272 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 331
LT+LE L ++ I TGL + L L+ Q+ S +GLT L + L
Sbjct: 101 FSDLTSLEQLRMEENQITSISDGAFTGLTAVLELGLNRNQITSISANAFTGLTGLHFLEL 160
Query: 332 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 389
S ++ A +++L L L +IT +A T+LT L L L+ IT A
Sbjct: 161 SNNQLTSIPSSVFASVTTLLDLLLYKNRITSIPTSAFTTLTALKTLRLYDNPITSISA 218
>gi|428313363|ref|YP_007124340.1| Leucine Rich Repeat (LRR)-containing protein [Microcoleus sp. PCC
7113]
gi|428254975|gb|AFZ20934.1| Leucine Rich Repeat (LRR)-containing protein [Microcoleus sp. PCC
7113]
Length = 254
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 65/158 (41%), Positives = 89/158 (56%), Gaps = 15/158 (9%)
Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 280
L L+ +L L L+ Q++D +++ +LK L L ++ITD L L GLT LE
Sbjct: 88 LTPLAGFTNLEVLILDSNQITD--VTPLARLTNLKDLTLAGSQITD--LTPLAGLTKLEV 143
Query: 281 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 340
L L+S I D + L GL NLK L+L Q+ L L+GL NLE+++LS I+D
Sbjct: 144 LYLESNQIKD--INPLAGLANLKTLQLMYNQIAD--LTPLAGLKNLEALHLSGNQITD-- 197
Query: 341 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 378
+ L GL +LK LNLD QITD +T L GL +LD
Sbjct: 198 ITPLGGLKNLKVLNLDNNQITD-----ITPLAGLANLD 230
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 70/208 (33%), Positives = 96/208 (46%), Gaps = 47/208 (22%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
QI+D L L G +NL L +N IT + A L NL L L L L
Sbjct: 84 QITD--LTPLAGFTNLEVL-ILDSNQIT--DVTPLARLTNLKDLTLAGSQITD--LTPLA 136
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
GL KLE L ++ N I D+ PL+GL NLK+LQ+ +++ D + L GL+ L L+L
Sbjct: 137 GLTKLEVLYLE-SNQI--KDINPLAGLANLKTLQLMYNQIAD--LTPLAGLKNLEALHLS 191
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
G +T ++ LG L +LKVLNL N+ITD + L
Sbjct: 192 GNQIT-----DITPLGGL---------------------KNLKVLNLDNNQITD--ITPL 223
Query: 273 KGLTNLESLNLD-------SCGIGDEGL 293
GL NL+SL + +C I D +
Sbjct: 224 AGLANLDSLYVPGNPITQRTCPITDRNV 251
>gi|84043372|ref|XP_951476.1| hypothetical protein [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|33348176|gb|AAQ15503.1| leucine-rich repeat protein (LRRP), putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
gi|62359981|gb|AAX80405.1| leucine-rich repeat protein (LRRP), putative [Trypanosoma brucei]
Length = 1393
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 82/267 (30%), Positives = 127/267 (47%), Gaps = 30/267 (11%)
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
++A A ++ L KL L CT I G+ L L +L+ L++ N +S ++ L +
Sbjct: 477 VEALANILTLEKLSLHGCTDIDAGIGCLGNLPQLKVLDLSGTNTDNES-LRSLCLSQTMV 535
Query: 184 SLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
SL +S C K+T+ ++++ L+ L LNL C A ++L L L L+ ++D
Sbjct: 536 SLNLSHCWKMTN--VSHISSLEALNELNLSNCIRINAGWEALEKLQQLHVAILSNTHITD 593
Query: 243 DGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLV---NLTG 298
G FSK +L L+L F N++ D + L +T LE LNLDSC +GL L
Sbjct: 594 RGISYFSKCKNLVTLDLSFCNKLLD--VTTLSNITTLEELNLDSCSNIRKGLSVLGELPR 651
Query: 299 LC--NLKCLELSDTQVGSSG------------------LRHLSGLTNLESINLSFTGISD 338
LC N+K ++L D+ +GS G + LS L LE +NL +
Sbjct: 652 LCVLNIKGVQLEDSVIGSLGNGKSLVRLSLENCKGFGDVTPLSNLVTLEELNLHYCDKVT 711
Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGL 365
+ L L L+ L+L Q+ D L
Sbjct: 712 SGMGTLGRLPQLRVLDLGRTQVDDNSL 738
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 110/446 (24%), Positives = 181/446 (40%), Gaps = 108/446 (24%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC 91
AL +L L +N W + Q L LS + +TD G+ + C NL +LD +FC
Sbjct: 556 ALNELNLSNCIRINAGWEALEKLQ--QLHVAILSNTHITDRGISYFSKCKNLVTLDLSFC 613
Query: 92 IQISD-------GGLEHL---------RGLSNLTSLSFRRNNAITAQGMKAFAGLI---- 131
++ D LE L +GLS L L R + +G++ +I
Sbjct: 614 NKLLDVTTLSNITTLEELNLDSCSNIRKGLSVLGELP--RLCVLNIKGVQLEDSVIGSLG 671
Query: 132 ---NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
+LV+L LE C + G + L L+ LE LN+ +C+ +T S M L L L+ L +
Sbjct: 672 NGKSLVRLSLENC-KGFGDVTPLSNLVTLEELNLHYCDKVT-SGMGTLGRLPQLRVLDLG 729
Query: 189 CSKVTD------------------------SGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
++V D + I+ + L L LN++ C + +
Sbjct: 730 RTQVDDNSLENICTSSIPLVSLNFSHCKKITSISAIASLTALEELNIDNCCNVTSGWNVF 789
Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNL 283
L L L+ +++D+ S+ SL LNL F +ITD + L +T LE LNL
Sbjct: 790 GTLHQLRVATLSNTRINDEKIRHVSECKSLNTLNLAFCKDITD--VTALSKITMLEELNL 847
Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS--------------------------GL 317
D C +G+ L L + L + + +G +
Sbjct: 848 DCCPNIRKGIETLGTLPKARILSMKECYMGDGYAQQCSILGNSKSLVKLNLERSRGRISV 907
Query: 318 RHLSGLTNLESI-----------------------NLSFTGISDGSLRKLAGLSSLKSLN 354
+ LS + LE + NL +T I+ + + ++ SL+SLN
Sbjct: 908 KALSDIATLEELVLDHAREVCCIPSFSCLPRLRVLNLKYTDINGDATKNISESKSLRSLN 967
Query: 355 LD-ARQITDTGLAALTSLTGLTHLDL 379
L + +TD ++ L+SL+ L L++
Sbjct: 968 LSHCKWVTD--ISVLSSLSTLEELNV 991
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 97/372 (26%), Positives = 163/372 (43%), Gaps = 58/372 (15%)
Query: 65 SGSDVTDSGLIHLKDCSNLQSLDFNFCIQISD-------GGLEHL---------RGLSNL 108
SG V D+ L L DC +L+ L+ ++CIQ++D +E L RG+ +
Sbjct: 303 SGVPVEDNCLKDLCDCGSLERLNISYCIQLTDINPLSNATAIEELNLNGCRRITRGIDVV 362
Query: 109 TSLSFRR-----NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 163
+L R + ++ + + +LVK+ L+ C G + L ++ LE LNI+
Sbjct: 363 WALPKLRVFHMKDVHLSEPSLDSVGTGGSLVKVSLDNCAGF-GDMSLLSSIVTLEELNIQ 421
Query: 164 WCNCITDS----DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
C I P + N+K + IS T GI K L +L + ++ G +
Sbjct: 422 KCADIISGVGCLGTLPYLRVLNIKEVHISSLDFT--GIGASKSLLQLNMESITG----LS 475
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL---------- 269
+++L+ + +L L+L+ C D G + LKVL+L +E L
Sbjct: 476 NVEALANILTLEKLSLHGCTDIDAGIGCLGNLPQLKVLDLSGTNTDNESLRSLCLSQTMV 535
Query: 270 -------------VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 316
H+ L L LNL +C + G L L L LS+T + G
Sbjct: 536 SLNLSHCWKMTNVSHISSLEALNELNLSNCIRINAGWEALEKLQQLHVAILSNTHITDRG 595
Query: 317 LRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 375
+ + S NL +++LSF + D + L+ +++L+ LNLD+ GL+ L L L
Sbjct: 596 ISYFSKCKNLVTLDLSFCNKLLD--VTTLSNITTLEELNLDSCSNIRKGLSVLGELPRLC 653
Query: 376 HLDLFGARITDS 387
L++ G ++ DS
Sbjct: 654 VLNIKGVQLEDS 665
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 91/336 (27%), Positives = 153/336 (45%), Gaps = 38/336 (11%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
++L +D+ ++ + +L+SL+ + C ++D +S L+SLS
Sbjct: 942 LNLKYTDINGDATKNISESKSLRSLNLSHCKWVTD--------ISVLSSLS--------- 984
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
L +L++ C I G +L G + L + I IT D+ LS
Sbjct: 985 ----------TLEELNVNCCNAIRKGWESL-GKLPLLRVAILSDTNITAKDIACLSSCKK 1033
Query: 182 LKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
L L+ C K++D + Y +Q L L ++ C L++L L L +L+L
Sbjct: 1034 LVKLKFFRCKKLSDVTVVY--KIQSLEELIVKNCSGGLKGLNALGTLPRLRFLHLRNVSG 1091
Query: 241 SDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 299
SD E SL LN+ E+TD L +T+LE L+L CG EG+ L L
Sbjct: 1092 SDISVESIGTSKSLVRLNIETREELTDT--TPLSNITSLEELSLRKCGNNLEGVGTLGKL 1149
Query: 300 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT-GISDGSLRKLAGLSSLKSLNLDAR 358
L+ L L +++ S L ++ ++ S+NL+ + ++D S ++ L++L+ LNL
Sbjct: 1150 PRLRSLYLGLSRINDSTLYYICLSRSITSLNLASSWKLTDIS--HISKLTALEELNLRGC 1207
Query: 359 QITDTGLAALTSLTGLTHLDLFGARITDS-GAAYLR 393
+G AL+ L L L+L R+T G Y+R
Sbjct: 1208 YPITSGWEALSELPRLRVLNLESTRVTTRYGGYYIR 1243
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 86/320 (26%), Positives = 143/320 (44%), Gaps = 39/320 (12%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISD-------------------GGLEHLRG 104
LS +++T + L C L L F C ++SD GGL+ L
Sbjct: 1015 LSDTNITAKDIACLSSCKKLVKLKFFRCKKLSDVTVVYKIQSLEELIVKNCSGGLKGLNA 1074
Query: 105 LSNLTSLSFR--RNNAITAQGMKAFAGLINLVKLDLERCTRIH-GGLVNLKGLMKLESLN 161
L L L F RN + + +++ +LV+L++E TR L + LE L+
Sbjct: 1075 LGTLPRLRFLHLRNVSGSDISVESIGTSKSLVRLNIE--TREELTDTTPLSNITSLEELS 1132
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 221
++ C + + L L L+SL + S++ DS + Y+ + +T LNL +
Sbjct: 1133 LRKCGNNLEG-VGTLGKLPRLRSLYLGLSRINDSTLYYICLSRSITSLNL-ASSWKLTDI 1190
Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL-VHLKGLTNLES 280
+S L +L LNL C G E S++ L+VLNL +T +++ +L +
Sbjct: 1191 SHISKLTALEELNLRGCYPITSGWEALSELPRLRVLNLESTRVTTRYGGYYIRRCKSLVT 1250
Query: 281 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS-----GLRHLSGLTNLESINLSFTG 335
L+L+SC + D + L N+K LE + +G G L L L +NL +
Sbjct: 1251 LSLESCDMTDA-----SCLANIKTLE--ELHIGRCKELRWGFSPLFTLPRLRILNLICSL 1303
Query: 336 ISDGSLRKLAGLSSLKSLNL 355
I+D LR++ +++ LNL
Sbjct: 1304 ITDEDLREIQPPHTIEELNL 1323
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 95/191 (49%), Gaps = 16/191 (8%)
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS-GIAYLKGLQKLTL 208
++ L LE LN++ C IT S + LS L L+ L + ++VT G Y++ + L
Sbjct: 1192 HISKLTALEELNLRGCYPIT-SGWEALSELPRLRVLNLESTRVTTRYGGYYIRRCKSLVT 1250
Query: 209 LNLEGCPVT-AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 267
L+LE C +T A+CL ++ L L ++ RC+ G + L++LNL + ITDE
Sbjct: 1251 LSLESCDMTDASCLANIKTLEEL---HIGRCKELRWGFSPLFTLPRLRILNLICSLITDE 1307
Query: 268 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL------ELSDTQVGSSGLRHLS 321
L ++ +E LNL C E L ++T L +K + + D + + G R L
Sbjct: 1308 DLREIQPPHTIEELNLSYC----EELNDITPLGRIKSIKKLHLRQSHDARRPTEGFRSLL 1363
Query: 322 GLTNLESINLS 332
L L ++L+
Sbjct: 1364 ELPCLSWVDLN 1374
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 96/385 (24%), Positives = 149/385 (38%), Gaps = 81/385 (21%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLS-NLTSLSFRRN 116
+L ++L D SG+ L L+ LD Q+ D LE++ S L SL+F
Sbjct: 698 TLEELNLHYCDKVTSGMGTLGRLPQLRVLDLGR-TQVDDNSLENICTSSIPLVSLNFSHC 756
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGG------------------------LVNLK 152
IT+ + A A L L +L+++ C + G + ++
Sbjct: 757 KKITS--ISAIASLTALEELNIDNCCNVTSGWNVFGTLHQLRVATLSNTRINDEKIRHVS 814
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
L +LN+ +C ITD + LS +T L+ L + C GI L L K +L+++
Sbjct: 815 ECKSLNTLNLAFCKDITD--VTALSKITMLEELNLDCCPNIRKGIETLGTLPKARILSMK 872
Query: 213 GCPVTAACLDSLSALG---SLFYLNLNRCQ-------LSD-------------DGC--EK 247
C + S LG SL LNL R + LSD + C
Sbjct: 873 ECYMGDGYAQQCSILGNSKSLVKLNLERSRGRISVKALSDIATLEELVLDHAREVCCIPS 932
Query: 248 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 307
FS + L+VLNL + +I + ++ +L SLNL C +
Sbjct: 933 FSCLPRLRVLNLKYTDINGDATKNISESKSLRSLNLSHCKW------------------V 974
Query: 308 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 367
+D V LS L+ LE +N++ L L L+ L IT +A
Sbjct: 975 TDISV-------LSSLSTLEELNVNCCNAIRKGWESLGKLPLLRVAILSDTNITAKDIAC 1027
Query: 368 LTSLTGLTHLDLFG-ARITDSGAAY 391
L+S L L F +++D Y
Sbjct: 1028 LSSCKKLVKLKFFRCKKLSDVTVVY 1052
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 117/451 (25%), Positives = 185/451 (41%), Gaps = 92/451 (20%)
Query: 17 SRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIH 76
+ C+ V+L D A D G Y G I ++ L++ LS G ++
Sbjct: 96 TECIHRVTLYNAADNAFSDE--GLYEGALSSLCGRIQAKK---LTITLS-----KGGKLN 145
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNL---TSLSFRRNN---------------- 117
LK S L+ L+ I+ G L ++ L+NL L R NN
Sbjct: 146 LKRVSKLKQLE-ELRIEYPRGKLVNIISLNNLDMLKRLCLRSNNVDNNDVCHLFSVGTLE 204
Query: 118 --AIT----AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDS 171
AIT ++ + L NL+ L+L + + KL L++ CN ITD+
Sbjct: 205 ELAITDTMQLTNIRGISRLTNLMCLELNSTDIDDTCIGEISACAKLSKLSVSECNNITDA 264
Query: 172 DMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
P+S L L+ L + SC +T GI L L +L +L+L G PV CL L GSL
Sbjct: 265 --TPISQLAALEELNLNSCYHIT-KGIGTLGMLLRLRMLDLSGVPVEDNCLKDLCDCGSL 321
Query: 231 FYLNLNRC-QLSD---------------DGCEKFSK-------IGSLKVLNLGFNEIT-- 265
LN++ C QL+D +GC + ++ + L+V ++ ++
Sbjct: 322 ERLNISYCIQLTDINPLSNATAIEELNLNGCRRITRGIDVVWALPKLRVFHMKDVHLSEP 381
Query: 266 ----------------DEC-----LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 304
D C + L + LE LN+ C G+ L L L+
Sbjct: 382 SLDSVGTGGSLVKVSLDNCAGFGDMSLLSSIVTLEELNIQKCADIISGVGCLGTLPYLRV 441
Query: 305 LELSDTQVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNLDARQITDT 363
L + + + S + +L +N+ S TG+S+ + LA + +L+ L+L D
Sbjct: 442 LNIKEVHISSLDFTGIGASKSLLQLNMESITGLSN--VEALANILTLEKLSLHGCTDIDA 499
Query: 364 GLAALTSLTGLTHLDLFGARITDSGAAYLRS 394
G+ L +L L LDL G T++ LRS
Sbjct: 500 GIGCLGNLPQLKVLDLSG---TNTDNESLRS 527
>gi|406830657|ref|ZP_11090251.1| hypothetical protein SpalD1_03434 [Schlesneria paludicola DSM
18645]
Length = 254
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 93/173 (53%)
Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 280
L+ L L +L+++ +++ G + K+ SL L L ++I+D L L+ L NL +
Sbjct: 66 LNLLKPFRDLTWLDVSGTTITNAGMPEIGKLTSLTALYLSKSQISDAGLSELRSLKNLTT 125
Query: 281 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 340
L++ GI +EG+ ++ L L+ L L T + GL L LT+L +NL + ++D +
Sbjct: 126 LHIVGNGISNEGMRSIGELDELRILHLGRTTITEEGLHELKKLTHLSDLNLIHSNLNDDA 185
Query: 341 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
L+ L+SL +L+L +I+D GLA+ L LT L + T +G L+
Sbjct: 186 ANVLSELTSLTTLHLGRNEISDVGLASFNKLNNLTILTYQRNKTTLAGEEALK 238
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 87/163 (53%), Gaps = 3/163 (1%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
+D+SG+ +T++G+ + ++L +L + QISD GL LR L NLT+L N I+
Sbjct: 78 LDVSGTTITNAGMPEIGKLTSLTALYLSKS-QISDAGLSELRSLKNLTTLHIV-GNGISN 135
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
+GM++ L L L L R T GL LK L L LN+ N + D LS LT+
Sbjct: 136 EGMRSIGELDELRILHLGRTTITEEGLHELKKLTHLSDLNLIHSN-LNDDAANVLSELTS 194
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
L +L + ++++D G+A L LT+L + T A ++L
Sbjct: 195 LTTLHLGRNEISDVGLASFNKLNNLTILTYQRNKTTLAGEEAL 237
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 88/178 (49%), Gaps = 11/178 (6%)
Query: 149 VNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTL 208
VN KG K N K+ N +KP LT L +S + +T++G+ + L LT
Sbjct: 53 VNFKGNKKF---NYKYLNL-----LKPFRDLT---WLDVSGTTITNAGMPEIGKLTSLTA 101
Query: 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 268
L L ++ A L L +L +L L++ +S++G ++ L++L+LG IT+E
Sbjct: 102 LYLSKSQISDAGLSELRSLKNLTTLHIVGNGISNEGMRSIGELDELRILHLGRTTITEEG 161
Query: 269 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 326
L LK LT+L LNL + D+ L+ L +L L L ++ GL + L NL
Sbjct: 162 LHELKKLTHLSDLNLIHSNLNDDAANVLSELTSLTTLHLGRNEISDVGLASFNKLNNL 219
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 79/168 (47%), Gaps = 1/168 (0%)
Query: 111 LSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD 170
++F+ N + + +L LD+ T + G+ + L L +L + I+D
Sbjct: 53 VNFKGNKKFNYKYLNLLKPFRDLTWLDVSGTTITNAGMPEIGKLTSLTALYLSKSQ-ISD 111
Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
+ + L L NL +L I + +++ G+ + L +L +L+L +T L L L L
Sbjct: 112 AGLSELRSLKNLTTLHIVGNGISNEGMRSIGELDELRILHLGRTTITEEGLHELKKLTHL 171
Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 278
LNL L+DD S++ SL L+LG NEI+D L L NL
Sbjct: 172 SDLNLIHSNLNDDAANVLSELTSLTTLHLGRNEISDVGLASFNKLNNL 219
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 73/147 (49%), Gaps = 1/147 (0%)
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
IT GM L +L L L + GL L+ L L +L+I N I++ M+ +
Sbjct: 85 ITNAGMPEIGKLTSLTALYLSKSQISDAGLSELRSLKNLTTLHI-VGNGISNEGMRSIGE 143
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
L L+ L + + +T+ G+ LK L L+ LNL + + LS L SL L+L R
Sbjct: 144 LDELRILHLGRTTITEEGLHELKKLTHLSDLNLIHSNLNDDAANVLSELTSLTTLHLGRN 203
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEIT 265
++SD G F+K+ +L +L N+ T
Sbjct: 204 EISDVGLASFNKLNNLTILTYQRNKTT 230
>gi|17546075|ref|NP_519477.1| GALA protein 4 [Ralstonia solanacearum GMI1000]
gi|17428371|emb|CAD15058.1| type III effector protein gala6 [Ralstonia solanacearum GMI1000]
Length = 620
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 98/339 (28%), Positives = 147/339 (43%), Gaps = 4/339 (1%)
Query: 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
G+ L+S++L +++ + G L L SLD + + + G E G + L LS
Sbjct: 259 GAPLVSLNLHNNEIGNEGARVLATSRTLTSLDVSNN-GVGNAGAEAFAGNTVLKQLSLA- 316
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
I+ G +A A +L LDL G L SL + N I +
Sbjct: 317 GGMISGDGAQALADNKSLTDLDLSNNRLGDAGAQALADSESFVSLKLG-GNEIGADGAEA 375
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
L+ L+SL +S + + G+ L G KL L+L C + + +L+ SL L L
Sbjct: 376 LARNVVLQSLNLSYNPIGFWGVNAL-GRAKLRKLDLCACAIDSDGASALARNTSLASLYL 434
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
++ DDG +K +L +LNL N I L +L +L+L GIGD+G
Sbjct: 435 GSNRIGDDGARALAKNSTLTLLNLSGNNIHAVGAQALASNDSLITLDLSRNGIGDDGTAA 494
Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355
L L L LS Q+GS+G + L+ L ++LS I LA + L +LN+
Sbjct: 495 LACHPRLTSLNLSRNQIGSTGAQQLAKSATLAELDLSENRIGPEGAEALARSTVLTTLNV 554
Query: 356 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRS 394
I + G AL LT LD I + GA L +
Sbjct: 555 SYNAIGEAGARALAESVSLTSLDARRNGIGEDGAKVLEA 593
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 82/293 (27%), Positives = 122/293 (41%), Gaps = 30/293 (10%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L + L+G ++ G L D +L LD + ++ D G + L + SL N
Sbjct: 310 LKQLSLAGGMISGDGAQALADNKSLTDLDLSNN-RLGDAGAQALADSESFVSLKLG-GNE 367
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD-MKPLS 177
I A G +A A + L L+L G VN G KL L++ C C DSD L+
Sbjct: 368 IGADGAEALARNVVLQSLNLSYNPIGFWG-VNALGRAKLRKLDL--CACAIDSDGASALA 424
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL---- 233
T+L SL + +++ D G L LTLLNL G + A +L++ SL L
Sbjct: 425 RNTSLASLYLGSNRIGDDGARALAKNSTLTLLNLSGNNIHAVGAQALASNDSLITLDLSR 484
Query: 234 --------------------NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
NL+R Q+ G ++ +K +L L+L N I E L
Sbjct: 485 NGIGDDGTAALACHPRLTSLNLSRNQIGSTGAQQLAKSATLAELDLSENRIGPEGAEALA 544
Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 326
T L +LN+ IG+ G L +L L+ +G G + L T +
Sbjct: 545 RSTVLTTLNVSYNAIGEAGARALAESVSLTSLDARRNGIGEDGAKVLEANTRI 597
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 88/199 (44%), Gaps = 26/199 (13%)
Query: 220 CLDSLSALGS-LFYLNLNRCQLSDDGCEKFSKIGS--LKVLNLGFNEITDECLVHLKGLT 276
L++L AL L +L + RC S E + + S LK LNL EI E L
Sbjct: 154 TLEALKALPPELEHLEIGRCTGSAISAEGLAHLASMPLKSLNLNGIEIGVEGARTLAASK 213
Query: 277 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT------------ 324
+L SL+L CGIGD L +++CL+LS ++G G + L+G
Sbjct: 214 SLVSLSLIGCGIGDRAAQALVASRSIQCLDLSVNRIGRDGAQALAGAPLVSLNLHNNEIG 273
Query: 325 -----------NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 373
L S+++S G+ + AG + LK L+L I+ G AL
Sbjct: 274 NEGARVLATSRTLTSLDVSNNGVGNAGAEAFAGNTVLKQLSLAGGMISGDGAQALADNKS 333
Query: 374 LTHLDLFGARITDSGAAYL 392
LT LDL R+ D+GA L
Sbjct: 334 LTDLDLSNNRLGDAGAQAL 352
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 79/289 (27%), Positives = 123/289 (42%), Gaps = 29/289 (10%)
Query: 92 IQISDGGLEHLRGLSNLTSL-SFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN 150
+ ISD + R LS +L S R +T + +KA L L++ RCT G ++
Sbjct: 127 LTISDPAM--FRQLSLYPALKSVRFKGELTLEALKALP--PELEHLEIGRCT---GSAIS 179
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
+GL L S+ LKSL ++ ++ G L + L L+
Sbjct: 180 AEGLAHLASMP--------------------LKSLNLNGIEIGVEGARTLAASKSLVSLS 219
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
L GC + +L A S+ L+L+ ++ DG + + L LNL NEI +E
Sbjct: 220 LIGCGIGDRAAQALVASRSIQCLDLSVNRIGRDGAQALAG-APLVSLNLHNNEIGNEGAR 278
Query: 271 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 330
L L SL++ + G+G+ G G LK L L+ + G + L+ +L ++
Sbjct: 279 VLATSRTLTSLDVSNNGVGNAGAEAFAGNTVLKQLSLAGGMISGDGAQALADNKSLTDLD 338
Query: 331 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
LS + D + LA S SL L +I G AL L L+L
Sbjct: 339 LSNNRLGDAGAQALADSESFVSLKLGGNEIGADGAEALARNVVLQSLNL 387
>gi|374293090|ref|YP_005040125.1| hypothetical protein AZOLI_2723 [Azospirillum lipoferum 4B]
gi|357425029|emb|CBS87910.1| Conserved protein of unknown function; Leucine-rich repeat domain
[Azospirillum lipoferum 4B]
Length = 1026
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 108/331 (32%), Positives = 159/331 (48%), Gaps = 35/331 (10%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
SL ++ SG+ V+D L L LQ LD C S L L GLS+L LS +
Sbjct: 19 SLQQLNCSGTSVSD--LSPLNGLRGLQQLD---CSLTSVSDLSPLSGLSDLQQLSC---S 70
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIH-GGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+ + + +GL L +LD C+ L L GL L+ L+ C+ + SD+ PL
Sbjct: 71 STSVSDLSPLSGLSGLQQLD---CSSTSVSDLFPLSGLSGLQQLS---CSSTSVSDLFPL 124
Query: 177 SGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAAC-LDSLSALGSLFYLN 234
SGL+ L+ L S + V+D S ++ L GLQ+L C +T+ L LS L L L+
Sbjct: 125 SGLSGLQELSCSGTSVSDLSPLSGLNGLQQLD------CSLTSVSDLSPLSGLSGLQELS 178
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
+ +SD S + L+ L+ ++D L L GL+ L+ L + D L
Sbjct: 179 CSGTSVSD--LSPLSGLSGLQELSCSGTSVSD--LSPLSGLSGLQQLYCSGTSVSD--LS 232
Query: 295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 354
L+GL L+ L S T V L LSGL+ L+ + S T +SD L L+GLS L+ L+
Sbjct: 233 PLSGLSGLQQLSCSGTSVND--LSPLSGLSGLQQLYCSVTSVSD--LSPLSGLSGLQELS 288
Query: 355 LDARQITDTGLAALTSLTGLTHLDLFGARIT 385
++D L L+ L+ L L L+ I
Sbjct: 289 CSDTSVSD--LFPLSGLSSLQELYLYNVEIP 317
Score = 41.2 bits (95), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 81/182 (44%), Gaps = 26/182 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
S L + SG+ V+D L L S LQ L C S L L GLS L L
Sbjct: 172 SGLQELSCSGTSVSD--LSPLSGLSGLQELS---CSGTSVSDLSPLSGLSGLQQLYC--- 223
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN-LKGLMKLESLNIKWCNCITDSDMKP 175
+ + + +GL L +L C+ G VN L L L L +C+ + SD+ P
Sbjct: 224 SGTSVSDLSPLSGLSGLQQLS---CS---GTSVNDLSPLSGLSGLQQLYCSVTSVSDLSP 277
Query: 176 LSGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLE--GCPVTAA--------CLDSL 224
LSGL+ L+ L S + V+D ++ L LQ+L L N+E G P CLD L
Sbjct: 278 LSGLSGLQELSCSDTSVSDLFPLSGLSSLQELYLYNVEIPGIPTAGVLSQEPDDNCLDRL 337
Query: 225 SA 226
A
Sbjct: 338 RA 339
>gi|219821270|gb|ACL37758.1| internalin A [Listeria monocytogenes]
Length = 739
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 101/316 (31%), Positives = 157/316 (49%), Gaps = 34/316 (10%)
Query: 74 LIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINL 133
+ LKD + L + N QI+D + L L+NLT L+ NN IT + L NL
Sbjct: 55 ITPLKDLTKLVDIVMNNN-QITD--ISPLANLTNLTGLTLF-NNQIT--DIDPLKNLTNL 108
Query: 134 VKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT 193
+L+L T + L GL L+ L+ N +TD +KPL+ LT L+ L IS +KV+
Sbjct: 109 NRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPLANLTTLERLDISSNKVS 162
Query: 194 DSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSK 250
D + L KLT NLE T + ++ LG +L L+LN QL D G +
Sbjct: 163 DISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LAS 213
Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 310
+ +L L++ N+I++ L L GLT L L L I + + + GL L LEL +
Sbjct: 214 LTNLTSLDVANNQISN--LAPLSGLTKLTELELGYNQISN--ISPIEGLTALTSLELHEN 269
Query: 311 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 370
Q+ + +S L NL + L F ISD + ++ L+ L+ L +++D +++L +
Sbjct: 270 QL--EDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLAN 323
Query: 371 LTGLTHLDLFGARITD 386
LT + L +I+D
Sbjct: 324 LTNINWLSAAHNQISD 339
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 78/144 (54%), Gaps = 14/144 (9%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N GFN++TD + LK LT L + +++ I D + L L NL
Sbjct: 34 DGLEY---LNNLTQINFGFNQLTD--ITPLKDLTKLVDIVMNNNQITD--ISPLANLTNL 86
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + + L LTNL + LS ISD + L+GL++L+ L+ Q+TD
Sbjct: 87 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQLSF-GNQVTD 141
Query: 363 TGLAALTSLTGLTHLDLFGARITD 386
L L +LT L LD+ +++D
Sbjct: 142 --LKPLANLTTLERLDISSNKVSD 163
>gi|343421695|emb|CCD18730.1| hypothetical protein, conserved [Trypanosoma vivax Y486]
Length = 582
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 100/339 (29%), Positives = 153/339 (45%), Gaps = 37/339 (10%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
+L +DLSG+ V D L + NL ++ C +SD + L + +L L
Sbjct: 128 NLRELDLSGTRVQDEVFYELSENPNLTKVNLRQCQGLSD--VSPLADIESLQELDLGLCR 185
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
+I +G++ A L NL L+LE+ L L LE LN+ C + D + PLS
Sbjct: 186 SIN-EGVQDLAELPNLRVLNLEKVNVPSDSLFELCKSRSLEKLNLSSCKRLLD--VSPLS 242
Query: 178 GLTNLKSLQIS--CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
+ L L +S CS T G++ L LQ L +LNL VT L LS SL LNL
Sbjct: 243 EIKTLVELDLSLCCSLFT--GVSELGKLQCLRILNLRNTAVTDHSLPGLSESDSLEILNL 300
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
+ C+ G ++ LK + +L L+L +C +G+ +
Sbjct: 301 SSCR--------------------GLTNVSP-----LKEIKSLVQLDLSNCPALRDGIGS 335
Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLN 354
L L L L+L +T + + LR + +LE ++ S T +SD + ++ L++L LN
Sbjct: 336 LVALPFLCTLKLRNTAITNESLRDICESESLEELDASSCTALSD--VFHISVLNTLVELN 393
Query: 355 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
L G+ A+ SL L LD+ G IT+ LR
Sbjct: 394 LSFCPNLVKGMEAIASLPFLRALDISGTPITNHCLRGLR 432
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 106/208 (50%), Gaps = 11/208 (5%)
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
+ GL NL+ L +S ++V D L LT +NL C + + L+ + SL L+L
Sbjct: 123 IGGLKNLRELDLSGTRVQDEVFYELSENPNLTKVNLRQCQGLSD-VSPLADIESLQELDL 181
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
C+ ++G + +++ +L+VLNL + + L L +LE LNL SC + L++
Sbjct: 182 GLCRSINEGVQDLAELPNLRVLNLEKVNVPSDSLFELCKSRSLEKLNLSSC----KRLLD 237
Query: 296 LTGLCNLKCLELSDTQVGSS---GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
++ L +K L D + S G+ L L L +NL T ++D SL L+ SL+
Sbjct: 238 VSPLSEIKTLVELDLSLCCSLFTGVSELGKLQCLRILNLRNTAVTDHSLPGLSESDSLEI 297
Query: 353 LNLDA-RQITDTGLAALTSLTGLTHLDL 379
LNL + R +T+ ++ L + L LDL
Sbjct: 298 LNLSSCRGLTN--VSPLKEIKSLVQLDL 323
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 76/318 (23%), Positives = 137/318 (43%), Gaps = 48/318 (15%)
Query: 6 ISQQIFNELVYSRCLTEVSLEAFRDC-------------ALQDLCLGQYPGVNDKWMDVI 52
+ ++F EL + LT+V+L R C +LQ+L LG +N+ D+
Sbjct: 139 VQDEVFYELSENPNLTKVNL---RQCQGLSDVSPLADIESLQELDLGLCRSINEGVQDL- 194
Query: 53 ASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISD---------------- 96
++ +L ++L +V L L +L+ L+ + C ++ D
Sbjct: 195 -AELPNLRVLNLEKVNVPSDSLFELCKSRSLEKLNLSSCKRLLDVSPLSEIKTLVELDLS 253
Query: 97 ------GGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN 150
G+ L L L L+ R N A+T + + +L L+L C GL N
Sbjct: 254 LCCSLFTGVSELGKLQCLRILNLR-NTAVTDHSLPGLSESDSLEILNLSSCR----GLTN 308
Query: 151 LKGLMKLESL-NIKWCNCITDSD-MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTL 208
+ L +++SL + NC D + L L L +L++ + +T+ + + + L
Sbjct: 309 VSPLKEIKSLVQLDLSNCPALRDGIGSLVALPFLCTLKLRNTAITNESLRDICESESLEE 368
Query: 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 268
L+ C + +S L +L LNL+ C G E + + L+ L++ IT+ C
Sbjct: 369 LDASSCTALSDVFH-ISVLNTLVELNLSFCPNLVKGMEAIASLPFLRALDISGTPITNHC 427
Query: 269 LVHLKGLTNLESLNLDSC 286
L L+ +LE+++L SC
Sbjct: 428 LRGLRKSNSLETVSLRSC 445
>gi|452824610|gb|EME31612.1| F-box and leucine-rich repeat protein GRR1 [Galdieria sulphuraria]
Length = 740
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 108/404 (26%), Positives = 181/404 (44%), Gaps = 60/404 (14%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPG-VNDKWMDVIASQGSSLL 60
LP+D+ + + R L+ L+ Q L L G V+D WM I S+ L
Sbjct: 30 LPKDLLNILVEKFSTDRKLSFRVLQWLEGTEFQQLNLSSQAGRVSDDWMSPI----STFL 85
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
L++L +FC+ ++D GL L + +++ +T
Sbjct: 86 ----------------------LEALVLSFCVHLTDEGLYKLTS----SQEDLHKDSPLT 119
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGL 179
+L LDL C+++ G+ L LE+L + C+ + + + + +
Sbjct: 120 C----------SLKLLDLSGCSQLSNVGMEALSYFRSLETLVLDHCSSLGNISLSYIRDI 169
Query: 180 TNLKSLQISC-SKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNR 237
LKSL I+C K++ SG+ L L++L LNL C +T+ L + +L +L +L L
Sbjct: 170 PCLKSLSIACCDKISGSGLEQLFYLKRLEFLNLSSCSRITSDALLHIGSLKNLKHLKLRN 229
Query: 238 CQLSDD-GCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
C D+ E + SL+ L L +I D L +L+ + + L L I +G+ +
Sbjct: 230 CARVDNRALEHIGNLTSLETLELYECVKIDDNGLKYLQKCSQIRHLCLSGTCISADGIAS 289
Query: 296 L-----TGLCNL---KCLELSDTQVGSSGLRHLSGLTNLESINLSFTG-ISDGSLRKLA- 345
L L NL +C L +Q S LR LS N++ + L + + D L+ ++
Sbjct: 290 LADIFMPHLENLHLTRCSNLVGSQFSVS-LRKLS--KNMKRLQLRYLHCVDDEVLQAISD 346
Query: 346 GLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARITDSG 388
L+SLNL D R +TD G++ L L+ L+ L L G ++D G
Sbjct: 347 SFPQLESLNLTDCRYVTDRGISWLEKLSSLSMLKLGGTSVSDYG 390
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 82/283 (28%), Positives = 143/283 (50%), Gaps = 23/283 (8%)
Query: 58 SLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
SL +DLSG S +++ G+ L +L++L + C + + L ++R + L SLS
Sbjct: 121 SLKLLDLSGCSQLSNVGMEALSYFRSLETLVLDHCSSLGNISLSYIRDIPCLKSLSIACC 180
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKP 175
+ I+ G++ L L L+L C+RI L+++ L L+ L ++ C + + ++
Sbjct: 181 DKISGSGLEQLFYLKRLEFLNLSSCSRITSDALLHIGSLKNLKHLKLRNCARVDNRALEH 240
Query: 176 LSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY-- 232
+ LT+L++L++ C K+ D+G+ YL+ ++ L L G ++A D +++L +F
Sbjct: 241 IGNLTSLETLELYECVKIDDNGLKYLQKCSQIRHLCLSGTCISA---DGIASLADIFMPH 297
Query: 233 ---LNLNRC------QLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLK-GLTNLESL 281
L+L RC Q S K SK ++K L L + + + DE L + LESL
Sbjct: 298 LENLHLTRCSNLVGSQFS-VSLRKLSK--NMKRLQLRYLHCVDDEVLQAISDSFPQLESL 354
Query: 282 NLDSCG-IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 323
NL C + D G+ L L +L L+L T V G+ + L
Sbjct: 355 NLTDCRYVTDRGISWLEKLSSLSMLKLGGTSVSDYGILRIKDL 397
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 93/346 (26%), Positives = 157/346 (45%), Gaps = 56/346 (16%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
V + L H+ + ++L++L+ C++I D GL++L+ S + L I+A G+ + A
Sbjct: 233 VDNRALEHIGNLTSLETLELYECVKIDDNGLKYLQKCSQIRHLCLS-GTCISADGIASLA 291
Query: 129 GLI--NLVKLDLERCTRIHGGL--VNLKGLMK---------------------------L 157
+ +L L L RC+ + G V+L+ L K L
Sbjct: 292 DIFMPHLENLHLTRCSNLVGSQFSVSLRKLSKNMKRLQLRYLHCVDDEVLQAISDSFPQL 351
Query: 158 ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKG-LQKLTLLNLEGCPV 216
ESLN+ C +TD + L L++L L++ + V+D GI +K L++++ L++ C +
Sbjct: 352 ESLNLTDCRYVTDRGISWLEKLSSLSMLKLGGTSVSDYGILRIKDLLKRISELDISSCIL 411
Query: 217 TAACLDS--LSALGSLFYLNL-NRCQLSDDGC----EKFSKIGSLKVL------NLGFNE 263
+ + S L+ + L L++ N QL+ + + F K LK L LG +
Sbjct: 412 CSEKITSHILNNVEHLKVLDISNNPQLTKNSWSLSYQNFLKRLPLKTLVIEEGGTLGKDF 471
Query: 264 ITD-ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS-GLRHLS 321
+T CL LE+L L C I + T L+ L+LS +V L
Sbjct: 472 LTSVACL-----FPKLETLLLSKCRIDGDDFKAFTDFGCLRHLKLSHCEVSKPFKFDFLI 526
Query: 322 GLTN-LESINLSFTGISDGSLRKLAG-LSSLKSLNL-DARQITDTG 364
L N L+ +NLS L + G L +L+SLNL + R +T+
Sbjct: 527 SLKNALQHLNLSSCHFVTDDLCTIIGELINLESLNLKNCRNVTNRA 572
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 72/246 (29%), Positives = 111/246 (45%), Gaps = 41/246 (16%)
Query: 168 ITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQK-----------LTLLNLEGC- 214
++D M P+S L++L +S C +TD G+ L Q+ L LL+L GC
Sbjct: 73 VSDDWMSPISTFL-LEALVLSFCVHLTDEGLYKLTSSQEDLHKDSPLTCSLKLLDLSGCS 131
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHL 272
++ +++LS SL L L+ C L + I LK L++ ++I+ L L
Sbjct: 132 QLSNVGMEALSYFRSLETLVLDHCSSLGNISLSYIRDIPCLKSLSIACCDKISGSGLEQL 191
Query: 273 KGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESIN 330
L LE LNL SC I + L+++ L NLK L+L + +V + L H+ LT+LE++
Sbjct: 192 FYLKRLEFLNLSSCSRITSDALLHIGSLKNLKHLKLRNCARVDNRALEHIGNLTSLETLE 251
Query: 331 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 390
L + +I D GL L + + HL L G I+ G A
Sbjct: 252 L-----------------------YECVKIDDNGLKYLQKCSQIRHLCLSGTCISADGIA 288
Query: 391 YLRSKF 396
L F
Sbjct: 289 SLADIF 294
>gi|320164980|gb|EFW41879.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 769
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 84/277 (30%), Positives = 115/277 (41%), Gaps = 26/277 (9%)
Query: 109 TSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCI 168
TSLS +N IT+ AF L LV + L+ N I
Sbjct: 45 TSLSLY-DNQITSLPASAFTSLTALVAVYLQD-------------------------NQI 78
Query: 169 TDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG 228
T +G+T LK L ++ +++T GL L L L G +T L++ L
Sbjct: 79 TAVPASAFAGMTTLKQLHLANNQLTSISTGTFAGLTSLVSLYLAGNQITTIPLNAFVDLT 138
Query: 229 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 288
L L LN Q++D F+ + +K L L N+IT GLT L L L S I
Sbjct: 139 QLVGLELNNNQITDIPASSFTGLSGMKRLTLNNNQITILSANAFTGLTALTELYLSSNTI 198
Query: 289 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 348
TGL L +EL Q+ S +GL++L + LS I+ S GL+
Sbjct: 199 TSISANAFTGLSALTMVELQFNQITSIASNSFTGLSSLIFLGLSSNRITSISDNAFTGLT 258
Query: 349 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
L SL L + QIT +ALT + L L L G T
Sbjct: 259 QLVSLTLFSNQITSISASALTGMPVLLQLTLTGNPFT 295
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 99/227 (43%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
N IT + LT L ++ + +++T + G+ L L+L +T+ + +
Sbjct: 52 NQITSLPASAFTSLTALVAVYLQDNQITAVPASAFAGMTTLKQLHLANNQLTSISTGTFA 111
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
L SL L L Q++ F + L L L N+ITD GL+ ++ L L++
Sbjct: 112 GLTSLVSLYLAGNQITTIPLNAFVDLTQLVGLELNNNQITDIPASSFTGLSGMKRLTLNN 171
Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 345
I TGL L L LS + S +GL+ L + L F I+ +
Sbjct: 172 NQITILSANAFTGLTALTELYLSSNTITSISANAFTGLSALTMVELQFNQITSIASNSFT 231
Query: 346 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
GLSSL L L + +IT A T LT L L LF +IT A+ L
Sbjct: 232 GLSSLIFLGLSSNRITSISDNAFTGLTQLVSLTLFSNQITSISASAL 278
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 70/235 (29%), Positives = 109/235 (46%), Gaps = 14/235 (5%)
Query: 113 FRRNNAITAQGMKAFAGLINLVKLDL--ERCTRIHGGLVNLKGLMKLESLNIKWCNCITD 170
+ ++N ITA AFAG+ L +L L + T I G GL L SL + N IT
Sbjct: 72 YLQDNQITAVPASAFAGMTTLKQLHLANNQLTSISTG--TFAGLTSLVSLYLAG-NQITT 128
Query: 171 SDMKPLSGLTNLKSLQISCSKVTD---SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
+ LT L L+++ +++TD S L G+++LTL N + ++A L+AL
Sbjct: 129 IPLNAFVDLTQLVGLELNNNQITDIPASSFTGLSGMKRLTLNNNQITILSANAFTGLTAL 188
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
L+ L+ ++ F+ + +L ++ L FN+IT GL++L L L S
Sbjct: 189 TELY---LSSNTITSISANAFTGLSALTMVELQFNQITSIASNSFTGLSSLIFLGLSSNR 245
Query: 288 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS---FTGISDG 339
I TGL L L L Q+ S L+G+ L + L+ FT + G
Sbjct: 246 ITSISDNAFTGLTQLVSLTLFSNQITSISASALTGMPVLLQLTLTGNPFTTLPPG 300
>gi|887026|gb|AAA69527.1| internalin, partial [Listeria monocytogenes]
Length = 346
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 106/329 (32%), Positives = 165/329 (50%), Gaps = 39/329 (11%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 26 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 79
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD + PL
Sbjct: 80 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL--SFGNQVTD--LXPL 131
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 132 ANLTTLERLDISXNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 184
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 185 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLXGLTKLTELKLGANQISN--I 238
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
L GL L LEL++ Q+ + +S L NL + L F ISD + ++ L+ L+ L
Sbjct: 239 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRL 294
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGA 382
+++D ++SL LT+++ A
Sbjct: 295 FFYNNKVSD-----VSSLANLTNINWLSA 318
>gi|219821324|gb|ACL37794.1| internalin A [Listeria monocytogenes]
Length = 739
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 101/316 (31%), Positives = 157/316 (49%), Gaps = 34/316 (10%)
Query: 74 LIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINL 133
+ LKD + L + N QI+D + L L+NLT L+ NN IT + L NL
Sbjct: 55 ITPLKDLTKLVDIVMNNN-QITD--ISPLANLTNLTGLTLF-NNQIT--DIDPLKNLTNL 108
Query: 134 VKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT 193
+L+L T + L GL L+ L+ N +TD +KPL+ LT L+ L IS +KV+
Sbjct: 109 NRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPLANLTTLERLDISSNKVS 162
Query: 194 DSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSK 250
D + L KLT NLE T + ++ LG +L L+LN QL D G +
Sbjct: 163 DISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LAS 213
Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 310
+ +L L++ N+I++ L L GLT L L L I + + + GL L LEL +
Sbjct: 214 LTNLTSLDVANNQISN--LAPLSGLTKLTELELGYNQISN--ISPIAGLTALTSLELHEN 269
Query: 311 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 370
Q+ + +S L NL + L F ISD + ++ L+ L+ L +++D +++L +
Sbjct: 270 QL--EDISPISNLKNLTYLALYFNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLAN 323
Query: 371 LTGLTHLDLFGARITD 386
LT + L +I+D
Sbjct: 324 LTNINWLSAAHNQISD 339
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 78/144 (54%), Gaps = 14/144 (9%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N GFN++TD + LK LT L + +++ I D + L L NL
Sbjct: 34 DGLEY---LNNLTQINFGFNQLTD--ITPLKDLTKLVDIVMNNNQITD--ISPLANLTNL 86
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + + L LTNL + LS ISD + L+GL++L+ L+ Q+TD
Sbjct: 87 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQLSF-GNQVTD 141
Query: 363 TGLAALTSLTGLTHLDLFGARITD 386
L L +LT L LD+ +++D
Sbjct: 142 --LKPLANLTTLERLDISSNKVSD 163
>gi|18378037|emb|CAD21749.1| hypothetical leucine-rich repeat protein 1, LRRP1 [Trypanosoma
brucei]
Length = 1394
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 102/407 (25%), Positives = 172/407 (42%), Gaps = 66/407 (16%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC 91
AL +L L G+N W + Q L L + +TD + H +C NL +LD +FC
Sbjct: 556 ALNELNLSNCFGINAGWEAIEKLQ--QLHVAILPNTHITDRDISHFSNCKNLVTLDLSFC 613
Query: 92 IQISDGGLEHLRGLSNLTSLS-------------------FRRNNAITAQGMKAFAGLI- 131
++ D + LSN+T+L R + +G+ +I
Sbjct: 614 NKLLD-----VTTLSNITTLEDLNLDNCSNIRKGLSVLGELPRLCVLNIKGVHLKDSVIG 668
Query: 132 ------NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
+ VKL LE C + G + L L+ LE LN+ +C+ +T S M L L L+ L
Sbjct: 669 SLGNGNSFVKLSLENC-KGFGDVKPLSNLVTLEELNLHYCDKVT-SGMGTLGRLLQLRVL 726
Query: 186 QISCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 244
+ ++V ++ + + L LNL C + + ++++L +L LN++ C G
Sbjct: 727 DLGRTQVDNNSLENICTSSSPLVSLNLSHCKKITS-ISAIASLTALEELNIDNCCNVTSG 785
Query: 245 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL----------------------- 281
F + L+V L I DE + H+ +L +L
Sbjct: 786 WNVFGTLHQLRVATLSNTRINDENVRHVSECKSLNTLNLAFCKDITDVTALSKITMLEEL 845
Query: 282 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG-- 339
NLD C +G+ L L + L + + Q+G S + S L N +S+ S G
Sbjct: 846 NLDCCPNIRKGIETLGTLPKARILSMKECQIGDSDAQQCSILGNSKSLVKLNLERSRGRI 905
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
S++ L+ +++L+ L LD Q + + S + L HL + + TD
Sbjct: 906 SVKALSNIATLEELVLDHAQ----EVCCIPSFSCLPHLRVLNVKYTD 948
Score = 67.8 bits (164), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 105/386 (27%), Positives = 167/386 (43%), Gaps = 50/386 (12%)
Query: 37 CLGQYPGVNDKWMDVIA------SQGSSLLSVDLSGSD-VTDSGLIHLKDCSNLQSLDFN 89
CL +N K+ D+ S+ SL ++LS VTD + L S L+ L+
Sbjct: 935 CLPHLRVLNVKYTDINGDVTKNISESKSLRLLNLSHCKWVTDISV--LSSLSTLEKLNVK 992
Query: 90 FCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLV 149
C I G E L L L ++ + ITA+ + + LVKL RC ++ V
Sbjct: 993 CCNGIRKG-WESLGKLP-LLRVAILSDTNITAKDIACLSSCKTLVKLKFFRCEKLSDVTV 1050
Query: 150 NLKGLMKLESLNIKWCNCITDSD----MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK 205
K + LE L ++ C SD + L L L+ L + K +D + + +
Sbjct: 1051 VYK-IQSLEELMVRSC-----SDGLKGLNALGTLPRLRFLHLRNLKGSDISVESIGTSKS 1104
Query: 206 LTLLNLE-GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 264
L LN+E +T A LS + SL L+L C + +G K+ LK L+LG + I
Sbjct: 1105 LVRLNIEMREELTNA--TPLSNITSLEELSLRDCGDNLEGVGTLGKLPRLKSLDLGLSRI 1162
Query: 265 TDECL-----------------------VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN 301
+D+ L H+ LT LE +NL C + G L+ L
Sbjct: 1163 SDDTLDDICLSRSITSLNLASSWKLTDISHISNLTALEEMNLSGCYPINSGWKALSELPR 1222
Query: 302 LKCLELSDTQVGSS-GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
L+ + L V + ++S L ++N+ + ++D S +A + +L+ L + +
Sbjct: 1223 LRVVNLESASVTTRYDGYYISRCKYLVTLNIQLSDMTDASY--IANIKTLEELRIGKSKE 1280
Query: 361 TDTGLAALTSLTGLTHLDLFGARITD 386
G +AL +L L LDLF +RITD
Sbjct: 1281 LTQGFSALFTLPRLRILDLFMSRITD 1306
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 93/349 (26%), Positives = 149/349 (42%), Gaps = 58/349 (16%)
Query: 94 ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
I + HL + L L+ +T ++ + L NL+ LDL + +
Sbjct: 189 IDNNDARHLFNIGTLEKLAITDTMQLT--NIRGISRLTNLMCLDLNSTNIDDSCVRRICA 246
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLE 212
+KL L++ CN ITD+ P+S L L+ L + SC +T GI L L +L +L+L
Sbjct: 247 CVKLSKLSVSECNNITDA--TPISQLEALEELNLNSCYHIT-KGIGTLGMLLRLRILDLS 303
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRC-QLSD---------------DGCEKFSK------ 250
G PV CL L GSL LN++ C QL D +GC + ++
Sbjct: 304 GVPVEDNCLKGLCDCGSLERLNISYCIQLKDINPLSNATATEELNLNGCRRITRGIGVVW 363
Query: 251 -IGSLKVLNLGFNEIT------------------DEC-----LVHLKGLTNLESLNLDSC 286
+ L+VL++ ++ D C + L + LE LN+ C
Sbjct: 364 ALPKLRVLHMKDVHLSEPSLDSVGTGGPLVKVSLDNCAGFGDMTLLSSIVTLEELNIQKC 423
Query: 287 GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLA 345
G+ L L L+ L + + + S + +L +N+ S TG+S+ + LA
Sbjct: 424 ADIISGVGCLGTLPYLRVLNIKEAHISSLDFTGIGASKSLLQLNMESITGLSN--VEALA 481
Query: 346 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRS 394
+ +L+ L+L D G+ L +L L LDL G T++ LRS
Sbjct: 482 NILTLEKLSLHGCTDIDAGIGCLGNLPQLKMLDLSG---TNTDNESLRS 527
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 95/374 (25%), Positives = 161/374 (43%), Gaps = 56/374 (14%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISD----------------GGLEHLRGL 105
+DLSG V D+ L L DC +L+ L+ ++CIQ+ D G RG+
Sbjct: 300 LDLSGVPVEDNCLKGLCDCGSLERLNISYCIQLKDINPLSNATATEELNLNGCRRITRGI 359
Query: 106 SNLTSLSFRR-----NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 160
+ +L R + ++ + + LVK+ L+ C G + L ++ LE L
Sbjct: 360 GVVWALPKLRVLHMKDVHLSEPSLDSVGTGGPLVKVSLDNCAGF-GDMTLLSSIVTLEEL 418
Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD---SGIAYLKGLQKLTLLNLEGCPVT 217
NI+ C I S + L L L+ L I + ++ +GI K L +L + ++ G
Sbjct: 419 NIQKCADII-SGVGCLGTLPYLRVLNIKEAHISSLDFTGIGASKSLLQLNMESITG---- 473
Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL-------- 269
+ +++L+ + +L L+L+ C D G + LK+L+L +E L
Sbjct: 474 LSNVEALANILTLEKLSLHGCTDIDAGIGCLGNLPQLKMLDLSGTNTDNESLRSLCLSQT 533
Query: 270 ---------------VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 314
H+ L L LNL +C + G + L L L +T +
Sbjct: 534 MVSLNLSHCWKMTNVSHISSLEALNELNLSNCFGINAGWEAIEKLQQLHVAILPNTHITD 593
Query: 315 SGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 373
+ H S NL +++LSF + D + L+ +++L+ LNLD GL+ L L
Sbjct: 594 RDISHFSNCKNLVTLDLSFCNKLLD--VTTLSNITTLEDLNLDNCSNIRKGLSVLGELPR 651
Query: 374 LTHLDLFGARITDS 387
L L++ G + DS
Sbjct: 652 LCVLNIKGVHLKDS 665
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 106/392 (27%), Positives = 164/392 (41%), Gaps = 66/392 (16%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ ++L+ +DL+ +++ DS + + C L L + C I+D + L L L+
Sbjct: 221 SRLTNLMCLDLNSTNIDDSCVRRICACVKLSKLSVSECNNITDAT--PISQLEALEELNL 278
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
IT +G+ L+ L LDL L L LE LNI +C I D+
Sbjct: 279 NSCYHIT-KGIGTLGMLLRLRILDLSGVPVEDNCLKGLCDCGSLERLNISYC--IQLKDI 335
Query: 174 KPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS--------- 223
PLS T + L ++ C ++T GI + L KL +L+++ ++ LDS
Sbjct: 336 NPLSNATATEELNLNGCRRIT-RGIGVVWALPKLRVLHMKDVHLSEPSLDSVGTGGPLVK 394
Query: 224 --------------LSALGSLFYLNLNRCQ--LSDDGCE-------------------KF 248
LS++ +L LN+ +C +S GC F
Sbjct: 395 VSLDNCAGFGDMTLLSSIVTLEELNIQKCADIISGVGCLGTLPYLRVLNIKEAHISSLDF 454
Query: 249 SKIGSLK-VLNLGFNEITDECLVHLKGLTN---LESLNLDSCGIGDEGLVNLTGLCNLKC 304
+ IG+ K +L L IT L +++ L N LE L+L C D G+ L L LK
Sbjct: 455 TGIGASKSLLQLNMESITG--LSNVEALANILTLEKLSLHGCTDIDAGIGCLGNLPQLKM 512
Query: 305 LELSDTQVGSSGLRHLSGLTNLESINLS----FTGISDGSLRKLAGLSSLKSLNLDARQI 360
L+LS T + LR L + S+NLS T +S ++ L +L LNL
Sbjct: 513 LDLSGTNTDNESLRSLCLSQTMVSLNLSHCWKMTNVS-----HISSLEALNELNLSNCFG 567
Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
+ G A+ L L L ITD ++
Sbjct: 568 INAGWEAIEKLQQLHVAILPNTHITDRDISHF 599
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 77/275 (28%), Positives = 129/275 (46%), Gaps = 10/275 (3%)
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
+ + L L KL+++ C I G +L G + L + I IT D+ LS L
Sbjct: 977 ISVLSSLSTLEKLNVKCCNGIRKGWESL-GKLPLLRVAILSDTNITAKDIACLSSCKTLV 1035
Query: 184 SLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
L+ C K++D + Y +Q L L + C L++L L L +L+L + SD
Sbjct: 1036 KLKFFRCEKLSDVTVVY--KIQSLEELMVRSCSDGLKGLNALGTLPRLRFLHLRNLKGSD 1093
Query: 243 DGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN 301
E SL LN+ E+T+ L +T+LE L+L CG EG+ L L
Sbjct: 1094 ISVESIGTSKSLVRLNIEMREELTNA--TPLSNITSLEELSLRDCGDNLEGVGTLGKLPR 1151
Query: 302 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFT-GISDGSLRKLAGLSSLKSLNLDARQI 360
LK L+L +++ L + ++ S+NL+ + ++D S ++ L++L+ +NL
Sbjct: 1152 LKSLDLGLSRISDDTLDDICLSRSITSLNLASSWKLTDIS--HISNLTALEEMNLSGCYP 1209
Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRSK 395
++G AL+ L L ++L A +T Y S+
Sbjct: 1210 INSGWKALSELPRLRVVNLESASVTTRYDGYYISR 1244
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 76/319 (23%), Positives = 137/319 (42%), Gaps = 37/319 (11%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISD-------------------GGLEHLRG 104
LS +++T + L C L L F C ++SD GL+ L
Sbjct: 1015 LSDTNITAKDIACLSSCKTLVKLKFFRCEKLSDVTVVYKIQSLEELMVRSCSDGLKGLNA 1074
Query: 105 LSNLTSLSFR--RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
L L L F RN + +++ +LV+L++E + L + LE L++
Sbjct: 1075 LGTLPRLRFLHLRNLKGSDISVESIGTSKSLVRLNIEMREELTNA-TPLSNITSLEELSL 1133
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
+ C + + L L LKSL + S+++D + + + +T LNL +
Sbjct: 1134 RDCGDNLEG-VGTLGKLPRLKSLDLGLSRISDDTLDDICLSRSITSLNL-ASSWKLTDIS 1191
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL-VHLKGLTNLESL 281
+S L +L +NL+ C + G + S++ L+V+NL +T ++ L +L
Sbjct: 1192 HISNLTALEEMNLSGCYPINSGWKALSELPRLRVVNLESASVTTRYDGYYISRCKYLVTL 1251
Query: 282 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS-----GLRHLSGLTNLESINLSFTGI 336
N+ + D + N+K LE + ++G S G L L L ++L + I
Sbjct: 1252 NIQLSDMTDASYI-----ANIKTLE--ELRIGKSKELTQGFSALFTLPRLRILDLFMSRI 1304
Query: 337 SDGSLRKLAGLSSLKSLNL 355
+D LR++ +++ LNL
Sbjct: 1305 TDEDLREIQPPHTIEELNL 1323
Score = 42.0 bits (97), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 72/271 (26%), Positives = 118/271 (43%), Gaps = 44/271 (16%)
Query: 83 LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT 142
L+SLD +ISD L+ + ++TSL+ + +T + + L L +++L C
Sbjct: 1152 LKSLDLGLS-RISDDTLDDICLSRSITSLNLASSWKLT--DISHISNLTALEEMNLSGCY 1208
Query: 143 RIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAYLK 201
I+ G L L +L +N++ + T D +S L +L I S +TD S IA +K
Sbjct: 1209 PINSGWKALSELPRLRVVNLESASVTTRYDGYYISRCKYLVTLNIQLSDMTDASYIANIK 1268
Query: 202 GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 261
L++L + + +LF L L++L+L
Sbjct: 1269 TLEELRI---------GKSKELTQGFSALFTL------------------PRLRILDLFM 1301
Query: 262 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL------ELSDTQVGSS 315
+ ITDE L ++ +E LNL C E L ++T L +K + + D + +
Sbjct: 1302 SRITDEDLREIQPPHTIEELNLSYC----EELNDITPLGRIKSIKKLHLRQRHDVRRPTE 1357
Query: 316 GLRHLSGLTNLESINL-SFTGISDGS--LRK 343
G R L L L ++L + G SD S LRK
Sbjct: 1358 GFRSLLELPCLSWVDLDNVYGWSDVSCELRK 1388
>gi|320165520|gb|EFW42419.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 694
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 71/245 (28%), Positives = 107/245 (43%), Gaps = 24/245 (9%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
N IT + LT L L ++ +++TD GL LT+L L G +T + +
Sbjct: 77 NQITSIPASAFANLTALTELDLTVNQITDISANAFAGLAALTMLFLPGNNITGIPANVFA 136
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
L +L LNL+ QL+ + F+ + +L+ LNL N+IT L L+SL L
Sbjct: 137 GLTALLVLNLSGNQLASIPADAFTGLTALQTLNLQSNQITSISAAGFADLAALKSLGLSG 196
Query: 286 CGIGDE-----------GLVNL-------------TGLCNLKCLELSDTQVGSSGLRHLS 321
+G G ++L TGL L L LS+ + S ++
Sbjct: 197 NRLGSNLANAFTNQSALGFIDLSNNQITSLLADAFTGLAALNTLFLSNNNITSIPANAVT 256
Query: 322 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 381
GLT L+ +++S + AGL++L L+L Q T A T LT LT L L
Sbjct: 257 GLTALKYLDVSGNQFTSFPASSFAGLTALTYLSLSNNQATSISAWAFTGLTALTSLQLSN 316
Query: 382 ARITD 386
+ TD
Sbjct: 317 NQFTD 321
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 79/276 (28%), Positives = 119/276 (43%), Gaps = 4/276 (1%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL- 151
QI+ L+ LT L N IT AFAGL L L L I G N+
Sbjct: 78 QITSIPASAFANLTALTELDLTVNQ-ITDISANAFAGLAALTMLFLPG-NNITGIPANVF 135
Query: 152 KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
GL L LN+ N + +GLT L++L + +++T A L L L L
Sbjct: 136 AGLTALLVLNLSG-NQLASIPADAFTGLTALQTLNLQSNQITSISAAGFADLAALKSLGL 194
Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 271
G + + ++ + +L +++L+ Q++ + F+ + +L L L N IT
Sbjct: 195 SGNRLGSNLANAFTNQSALGFIDLSNNQITSLLADAFTGLAALNTLFLSNNNITSIPANA 254
Query: 272 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 331
+ GLT L+ L++ + GL L L LS+ Q S +GLT L S+ L
Sbjct: 255 VTGLTALKYLDVSGNQFTSFPASSFAGLTALTYLSLSNNQATSISAWAFTGLTALTSLQL 314
Query: 332 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 367
S +D S AGL +L L L Q+T +A
Sbjct: 315 SNNQFTDISANAFAGLPALMELGLAGNQLTSIPTSA 350
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 81/317 (25%), Positives = 122/317 (38%), Gaps = 50/317 (15%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
QI+D GL+ LT L F N IT FAGL L+ L+L
Sbjct: 102 QITDISANAFAGLAALTML-FLPGNNITGIPANVFAGLTALLVLNLSGNQLASIPADAFT 160
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKV---------TDSGIAYL--- 200
GL L++LN++ N IT + L LKSL +S +++ S + ++
Sbjct: 161 GLTALQTLNLQ-SNQITSISAAGFADLAALKSLGLSGNRLGSNLANAFTNQSALGFIDLS 219
Query: 201 ------------KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 248
GL L L L +T+ ++++ L +L YL+++ Q + F
Sbjct: 220 NNQITSLLADAFTGLAALNTLFLSNNNITSIPANAVTGLTALKYLDVSGNQFTSFPASSF 279
Query: 249 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL--- 305
+ + +L L+L N+ T GLT L SL L + D GL L L
Sbjct: 280 AGLTALTYLSLSNNQATSISAWAFTGLTALTSLQLSNNQFTDISANAFAGLPALMELGLA 339
Query: 306 ---------------------ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 344
LS Q+ S +GLT L S+ LS ++
Sbjct: 340 GNQLTSIPTSALLDLTLLNFLSLSANQITSIPASAFTGLTALFSLILSRNQLTSIPAAAF 399
Query: 345 AGLSSLKSLNLDARQIT 361
+GL+ L L+LD T
Sbjct: 400 SGLTLLNILSLDTNPFT 416
>gi|320168280|gb|EFW45179.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 769
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 87/295 (29%), Positives = 128/295 (43%), Gaps = 6/295 (2%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL--ERCTRIHGGLVN 150
QI+ GLS LT L + N IT AF GL +L +L L + T I
Sbjct: 91 QITGLSANAFAGLSALTLLDLKGNQ-ITTIPENAFTGLASLQQLWLYTNQITSISANA-- 147
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
GL L L + + N + + +GLT L S+Q+ +++T G+ LT L
Sbjct: 148 FAGLSALTQLWM-YSNPLPNITANAFAGLTALNSMQLDRNQLTSIVANAFAGMPALTDLE 206
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
L+ +T+ + + L +L YLN+ + ++ F+ + +L L L N IT
Sbjct: 207 LQNNAITSISPSAFAGLTALTYLNMVQNHITGISANSFTGLSALNELYLSQNSITVISSN 266
Query: 271 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 330
GLT L SL L S I T L L L L + S + L L S+
Sbjct: 267 AFNGLTALSSLYLPSNQITSISANVFTNLPALSSLRLQSNSITSISSNAFTNLPALSSLR 326
Query: 331 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
L I+ S L +L +L+L +IT + A T+L GLT L L+ +IT
Sbjct: 327 LKSNSITSISSNAFTNLPALSALDLSDNEITVIPVNAFTNLPGLTDLKLYANKIT 381
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 98/224 (43%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
N IT + LT L+SL++ +++T GL LTLL+L+G +T ++ +
Sbjct: 66 NPITSIPANAFATLTALESLRLYNNQITGLSANAFAGLSALTLLDLKGNQITTIPENAFT 125
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
L SL L L Q++ F+ + +L L + N + + GLT L S+ LD
Sbjct: 126 GLASLQQLWLYTNQITSISANAFAGLSALTQLWMYSNPLPNITANAFAGLTALNSMQLDR 185
Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 345
+ G+ L LEL + + S +GLT L +N+ I+ S
Sbjct: 186 NQLTSIVANAFAGMPALTDLELQNNAITSISPSAFAGLTALTYLNMVQNHITGISANSFT 245
Query: 346 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 389
GLS+L L L IT A LT L+ L L +IT A
Sbjct: 246 GLSALNELYLSQNSITVISSNAFNGLTALSSLYLPSNQITSISA 289
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 94/336 (27%), Positives = 137/336 (40%), Gaps = 9/336 (2%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
S+L +DL G+ +T ++LQ L + + QI+ GLS LT L + +
Sbjct: 104 SALTLLDLKGNQITTIPENAFTGLASLQQL-WLYTNQITSISANAFAGLSALTQL-WMYS 161
Query: 117 NAITAQGMKAFAGLINLVKLDLER---CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
N + AFAGL L + L+R + + + L LE N N IT
Sbjct: 162 NPLPNITANAFAGLTALNSMQLDRNQLTSIVANAFAGMPALTDLELQN----NAITSISP 217
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
+GLT L L + + +T GL L L L +T ++ + L +L L
Sbjct: 218 SAFAGLTALTYLNMVQNHITGISANSFTGLSALNELYLSQNSITVISSNAFNGLTALSSL 277
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
L Q++ F+ + +L L L N IT L L SL L S I
Sbjct: 278 YLPSNQITSISANVFTNLPALSSLRLQSNSITSISSNAFTNLPALSSLRLKSNSITSISS 337
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
T L L L+LSD ++ + + L L + L I+ +GLS L SL
Sbjct: 338 NAFTNLPALSALDLSDNEITVIPVNAFTNLPGLTDLKLYANKITTIFANAFSGLSVLDSL 397
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 389
+L IT A+ SLT L L L +IT+ A
Sbjct: 398 DLSGNLITVIPANAIASLTALNFLYLNENQITNIPA 433
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 92/342 (26%), Positives = 136/342 (39%), Gaps = 53/342 (15%)
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN-LKGLMKLESL 160
G+ LT L + NNAIT+ AFAGL L L++ + I G N GL L L
Sbjct: 196 FAGMPALTDLELQ-NNAITSISPSAFAGLTALTYLNMVQ-NHITGISANSFTGLSALNEL 253
Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 220
+ N IT +GLT L SL + +++T L L+ L L+ +T+
Sbjct: 254 YLSQ-NSITVISSNAFNGLTALSSLYLPSNQITSISANVFTNLPALSSLRLQSNSITSIS 312
Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD---ECLVHLKGLTN 277
++ + L +L L L ++ F+ + +L L+L NEIT +L GLT+
Sbjct: 313 SNAFTNLPALSSLRLKSNSITSISSNAFTNLPALSALDLSDNEITVIPVNAFTNLPGLTD 372
Query: 278 LESL-------------------NLDSCG-----IGDEGLVNLTGL-------------- 299
L+ +LD G I + +LT L
Sbjct: 373 LKLYANKITTIFANAFSGLSVLDSLDLSGNLITVIPANAIASLTALNFLYLNENQITNIP 432
Query: 300 -------CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
L L L Q+ S +GLT L ++L I+ + L++L S
Sbjct: 433 ANAFASLTALTGLFLQQNQLASIDANAFAGLTALIDLDLREASITVMPVNAFTALTALTS 492
Query: 353 LNLDARQITDTGLAALTSLTGLTHLDLFGARITD-SGAAYLR 393
L L QIT SLT L +LDL +IT +A+ R
Sbjct: 493 LYLSLNQITTISANVFASLTALNYLDLSANQITSIEASAFTR 534
>gi|401426392|ref|XP_003877680.1| hypothetical protein, unknown function [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322493926|emb|CBZ29217.1| hypothetical protein, unknown function [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 811
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 94/317 (29%), Positives = 140/317 (44%), Gaps = 51/317 (16%)
Query: 63 DLSGSDVTDSGLIHLKDCSNLQSLDF--NFCIQISDGGLEHLRGL-------SNLTSLSF 113
DLS + + + L+ C NL LD +F Q GLE L L +++ SL
Sbjct: 472 DLSLAHTRVTNVTELQHCHNLWRLDLQGSFVDQAGIAGLERLPKLRVLLLSKTDVASLEL 531
Query: 114 RRNNAITAQ---------GMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMK-LESLNIK 163
+A Q AF G+ L T +N G+ K L LN+
Sbjct: 532 ILQSASLEQLEVKFSRVNEKSAFFGVTKASALTYVTLTHCDVSDINNLGMCKELRLLNV- 590
Query: 164 WCNCITDSDMKPLSGLTNLKSLQ---------------ISCSKVT-----DSGIAYLKG- 202
W + +T ++GL + KSLQ +SC+K+ S + L G
Sbjct: 591 WSSKVTSEG---IAGLCDAKSLQEVDLAETAVTDIGPLLSCTKIQALILYKSSVRSLDGI 647
Query: 203 --LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG 260
LQ+L L++ PV++ + SLSA SL LNL+ + DDG + + SLKV+++
Sbjct: 648 GALQRLRRLDIAETPVSS--IRSLSACQSLEILNLSNTAVDDDGFQGIGQAQSLKVVSMS 705
Query: 261 FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 320
F IT L L ++LE L SC + EGLV L C L L LS T++ G++ L
Sbjct: 706 FTAITQ--LGQLGQCSHLEELYAQSCPVTSEGLVGLEKACCLAKLNLSYTKI-QGGIQRL 762
Query: 321 SGLTNLESINLSFTGIS 337
+ L +N+ FT +
Sbjct: 763 TNCRKLLKLNVKFTEVP 779
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 89/390 (22%), Positives = 165/390 (42%), Gaps = 68/390 (17%)
Query: 59 LLSVDLSGSDVTDSGLIHLKD-------------CSNLQSLDFN---FCIQISDG----- 97
L SV LSG +V D+ + HL +N+Q+L IQ+S+
Sbjct: 308 LRSVHLSGCNVKDADVPHLAQLPCVEELLLSRTRITNVQALATGKGLRIIQLSNAQVDSD 367
Query: 98 GLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
G++ L+ L LT L ++ + +L+ L+L + G+ +L L+ L
Sbjct: 368 GIDGLQTLPYLTRLDL---SSTLVSDVNCLGQSQSLIYLNLAKTHVTSEGIADLSRLLTL 424
Query: 158 ESL-----NIKWCNCITDS-------------DMKPLSGLTNLKSLQ-ISCSKVTDSGIA 198
E L NI+ + + +S D L G L++LQ +S + + +
Sbjct: 425 EHLMLNNNNIRDVSFLAESHSLKTLSLQSTLVDSAALEGFGRLQTLQDLSLAHTRVTNVT 484
Query: 199 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 258
L+ L L+L+G V A + L L L L L++ ++ E + SL+ L
Sbjct: 485 ELQHCHNLWRLDLQGSFVDQAGIAGLERLPKLRVLLLSKTDVA--SLELILQSASLEQLE 542
Query: 259 LGFNEITDE-CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC-NLKCLELSDTQVGSSG 316
+ F+ + ++ + + L + L C + D +N G+C L+ L + ++V S G
Sbjct: 543 VKFSRVNEKSAFFGVTKASALTYVTLTHCDVSD---INNLGMCKELRLLNVWSSKVTSEG 599
Query: 317 LRHLSGLTNLESINLSFTGISD-----------------GSLRKLAGLSSLKSL-NLDAR 358
+ L +L+ ++L+ T ++D S+R L G+ +L+ L LD
Sbjct: 600 IAGLCDAKSLQEVDLAETAVTDIGPLLSCTKIQALILYKSSVRSLDGIGALQRLRRLDIA 659
Query: 359 QITDTGLAALTSLTGLTHLDLFGARITDSG 388
+ + + +L++ L L+L + D G
Sbjct: 660 ETPVSSIRSLSACQSLEILNLSNTAVDDDG 689
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 77/335 (22%), Positives = 140/335 (41%), Gaps = 42/335 (12%)
Query: 55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSL--------DFNFCIQ------------- 93
Q SL+ ++L+ + VT G+ L L+ L D +F +
Sbjct: 396 QSQSLIYLNLAKTHVTSEGIADLSRLLTLEHLMLNNNNIRDVSFLAESHSLKTLSLQSTL 455
Query: 94 ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
+ LE L L LS ++ NL +LDL+ G V+ G
Sbjct: 456 VDSAALEGFGRLQTLQDLSLAHTRVTNVTELQHCH---NLWRLDLQ------GSFVDQAG 506
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGL---TNLKSLQISCSKVTDSGIAY-LKGLQKLTLL 209
+ LE L ++ +D+ L + +L+ L++ S+V + + + LT +
Sbjct: 507 IAGLERLPKLRVLLLSKTDVASLELILQSASLEQLEVKFSRVNEKSAFFGVTKASALTYV 566
Query: 210 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
L C V+ +++L L LN+ +++ +G SL+ ++L +TD +
Sbjct: 567 TLTHCDVSD--INNLGMCKELRLLNVWSSKVTSEGIAGLCDAKSLQEVDLAETAVTD--I 622
Query: 270 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 329
L T +++L L + L + L L+ L++++T V S +R LS +LE +
Sbjct: 623 GPLLSCTKIQALILYKSSV--RSLDGIGALQRLRRLDIAETPVSS--IRSLSACQSLEIL 678
Query: 330 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 364
NLS T + D + + SLK +++ IT G
Sbjct: 679 NLSNTAVDDDGFQGIGQAQSLKVVSMSFTAITQLG 713
Score = 46.2 bits (108), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 81/333 (24%), Positives = 137/333 (41%), Gaps = 36/333 (10%)
Query: 80 CSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE 139
C L+S+ + C + D + HL L + L R Q + GL +++L
Sbjct: 305 CCFLRSVHLSGC-NVKDADVPHLAQLPCVEELLLSRTRITNVQALATGKGL-RIIQLSNA 362
Query: 140 RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAY 199
+ G+ L+ L L L++ + SD+ L +L L ++ + VT GIA
Sbjct: 363 QVD--SDGIDGLQTLPYLTRLDL---SSTLVSDVNCLGQSQSLIYLNLAKTHVTSEGIAD 417
Query: 200 LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 259
L L L L L + L+ SL L+L + E F ++ +L+ L+L
Sbjct: 418 LSRLLTLEHLMLNNNNIRDVSF--LAESHSLKTLSLQSTLVDSAALEGFGRLQTLQDLSL 475
Query: 260 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 319
+T+ + L+ NL L+L + G+ L L L+ L LS T V S L
Sbjct: 476 AHTRVTN--VTELQHCHNLWRLDLQGSFVDQAGIAGLERLPKLRVLLLSKTDVASLELIL 533
Query: 320 LSGLTNLESINLSFTGISDGS----LRKLAGLS-------------------SLKSLNLD 356
S +LE + + F+ +++ S + K + L+ L+ LN+
Sbjct: 534 QSA--SLEQLEVKFSRVNEKSAFFGVTKASALTYVTLTHCDVSDINNLGMCKELRLLNVW 591
Query: 357 ARQITDTGLAALTSLTGLTHLDLFGARITDSGA 389
+ ++T G+A L L +DL +TD G
Sbjct: 592 SSKVTSEGIAGLCDAKSLQEVDLAETAVTDIGP 624
>gi|414878156|tpg|DAA55287.1| TPA: hypothetical protein ZEAMMB73_170021 [Zea mays]
Length = 663
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 109/385 (28%), Positives = 182/385 (47%), Gaps = 33/385 (8%)
Query: 34 QDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGS-DVTDSGLIHLKDCSNLQSLDFNFCI 92
+ +CL + GV + ++ + + L +VDLS D L + L+ L + C+
Sbjct: 111 RSVCLARANGVGWRGLEALVAACPKLEAVDLSHCVSAGDREAAALAAAAGLRELRLDKCL 170
Query: 93 QISDGGLEHLR-GLSNLTSLSFRRNNAITAQGMKAFAG-LINLVKLDLERCTRIHGGLVN 150
++D GL + G L LS + I+ G+ A L L++ +G L +
Sbjct: 171 AVTDMGLAKVAVGCPRLEKLSLKWCREISDIGIDLLAKKCPELRSLNISYLKVGNGSLRS 230
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYL-KGLQKLT 207
+ L +LE L + C+CI D ++ LS G +L+S+ +S C VT G+A L G L
Sbjct: 231 ISSLERLEELAMVCCSCIDDEGLELLSKGSDSLQSVDVSRCDHVTSHGLASLIDGRNFLQ 290
Query: 208 LLNLEGC--PVTAACLDSLSALG-SLFYLNLNRCQLSD-------DGCEKFSKIGSLK-- 255
L C + + L+ L +L L L+ ++SD + C K +IG K
Sbjct: 291 KLYAADCLHEIGQRFVSKLATLKETLTTLKLDGLEVSDSLLEAIGESCNKLVEIGLSKCS 350
Query: 256 -VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG-DEGLVNLTGLCN-LKCLEL-SDTQ 311
V + G + + C ++L +++L C + + L ++ G C L+CL L S +
Sbjct: 351 GVTDEGISSLVARC-------SDLRTIDLTCCNLSTNNALDSIAGNCKMLECLRLESCSL 403
Query: 312 VGSSGLRHLSG-LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALT 369
+ GL+ ++ NL+ I+L+ G+ D +L LA S L+ L L I+D G+A ++
Sbjct: 404 INEKGLKRIATCCPNLKEIDLTDCGVDDAALEHLAKCSELRVLKLGLCSSISDKGIAFIS 463
Query: 370 SLTG-LTHLDLFG-ARITDSGAAYL 392
S G L LDL+ + ITD G A L
Sbjct: 464 SNCGKLVELDLYRCSSITDDGLAAL 488
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 96/203 (47%), Gaps = 28/203 (13%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR 103
+N+K + IA+ +L +DL+ V D+ L HL CS L+ L C ISD G+ +
Sbjct: 404 INEKGLKRIATCCPNLKEIDLTDCGVDDAALEHLAKCSELRVLKLGLCSSISDKGIAFIS 463
Query: 104 G-LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
L L R ++IT G+ A A G +++ LN+
Sbjct: 464 SNCGKLVELDLYRCSSITDDGLAALAN-----------------------GCKRIKLLNL 500
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISC-SKVTDSGIAYLK-GLQKLTLLNLEGC-PVTAA 219
+CN ITD+ + L L L +L++ C ++T GI+ + G + L L+L+ C V A
Sbjct: 501 CYCNKITDTGLGHLGSLEELTNLELRCLVRITGIGISSVAIGCKNLIELDLKRCYSVDDA 560
Query: 220 CLDSLSALG-SLFYLNLNRCQLS 241
L +L+ +L L ++ CQ++
Sbjct: 561 GLWALARYALNLRQLTISYCQVT 583
>gi|301630098|ref|XP_002944165.1| PREDICTED: hypothetical protein LOC100485662 [Xenopus (Silurana)
tropicalis]
Length = 274
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 112/230 (48%), Gaps = 30/230 (13%)
Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC---------------P 215
SD+ L L +L +L + ++V+ + + L L+ L L G
Sbjct: 15 SDVSSLVALKHLHTLHLDHTQVSQHSLMMVTSLPALSTLTLSGVVSLNSDKVLEGLSGLS 74
Query: 216 VTAACLDS-----------LSALGSLFYLNL-NRCQLSDDGCEKFSKIGSLKVLNLGFNE 263
+T L LS L SL L+L + Q++D G + S + L+ L+L
Sbjct: 75 LTRVVLPGRRCLSDFGLSYLSGLRSLIELDLTDHTQITDQGVQYISALDMLRTLSLCNTS 134
Query: 264 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVN-LTGLCNLKCLELSDTQVGSSGLRH-LS 321
++D L+HL+GL NLE+L+LD + G+ + L +L+ L LSDT VG + L+H +
Sbjct: 135 VSDSGLLHLRGLRNLENLSLDRTKVTSRGVSRCIPHLPHLQVLGLSDTNVGDNVLKHGIR 194
Query: 322 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 371
+L +NLS T I++ LR L + S+ L+LD IT L+ L S+
Sbjct: 195 HCRHLVKVNLSRTRITNKGLRFLKQV-SVTQLSLDGSGITPQALSELMSV 243
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 93/176 (52%), Gaps = 5/176 (2%)
Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL-GFNEI-TDECLVHLKGLTNL 278
+ SL AL L L+L+ Q+S + + +L L L G + +D+ L L GL+
Sbjct: 17 VSSLVALKHLHTLHLDHTQVSQHSLMMVTSLPALSTLTLSGVVSLNSDKVLEGLSGLSLT 76
Query: 279 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSFTGIS 337
+ + D GL L+GL +L L+L+D TQ+ G++++S L L +++L T +S
Sbjct: 77 RVVLPGRRCLSDFGLSYLSGLRSLIELDLTDHTQITDQGVQYISALDMLRTLSLCNTSVS 136
Query: 338 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
D L L GL +L++L+LD ++T G++ + L HL + G T+ G L+
Sbjct: 137 DSGLLHLRGLRNLENLSLDRTKVTSRGVSR--CIPHLPHLQVLGLSDTNVGDNVLK 190
Score = 42.0 bits (97), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 81/179 (45%), Gaps = 30/179 (16%)
Query: 94 ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
+SD GL +L GL +L L + IT QG++ + LD+ R
Sbjct: 86 LSDFGLSYLSGLRSLIELDLTDHTQITDQGVQYISA------LDMLR------------- 126
Query: 154 LMKLESLNIKWCNC-ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAY-LKGLQKLTLLNL 211
+ CN ++DS + L GL NL++L + +KVT G++ + L L +L L
Sbjct: 127 -------TLSLCNTSVSDSGLLHLRGLRNLENLSLDRTKVTSRGVSRCIPHLPHLQVLGL 179
Query: 212 EGCPVTAACLDS-LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
V L + L +NL+R ++++ G +F K S+ L+L + IT + L
Sbjct: 180 SDTNVGDNVLKHGIRHCRHLVKVNLSRTRITNKGL-RFLKQVSVTQLSLDGSGITPQAL 237
>gi|241575665|ref|XP_002403227.1| F-box/LRR-repeat protein, putative [Ixodes scapularis]
gi|215502182|gb|EEC11676.1| F-box/LRR-repeat protein, putative [Ixodes scapularis]
Length = 411
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 86/311 (27%), Positives = 145/311 (46%), Gaps = 51/311 (16%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLK-DCSNLQSLDFN 89
+L +L L + D + IA L +DL G S+V+++GL+ + NL+SL+
Sbjct: 123 SLSELNLSMCKQITDNSLGRIAQHLKGLERLDLGGCSNVSNTGLLLVAWGLKNLRSLNLR 182
Query: 90 FCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLV 149
C +SD G+ HL G++ +A G + L L L+ C ++ +
Sbjct: 183 SCRGVSDPGIGHLAGMTP-----------------EAAHGTLRLEALCLQDCQKLTDDAL 225
Query: 150 NLK--GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYL-KGLQK 205
GL L SLN+ +C +TD+ +K + + L+ L + SC ++D G+AYL +G +
Sbjct: 226 RFVSLGLADLRSLNLSFCASVTDAGLKHAARMPRLRELNLRSCDNISDLGLAYLAEGGSR 285
Query: 206 LTLLNLEGCPVTA--ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE 263
L L++ C L + L L L+LN C +SDDG + +
Sbjct: 286 LCALDVSFCDKVGDQGLLHASQGLFQLRSLSLNACPVSDDGIGRVA-------------- 331
Query: 264 ITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHL 320
+ L +L +L+L CG + D+GL + L L+C++L T++ + GL L
Sbjct: 332 ---------RSLGDLHTLHLGQCGRVTDKGLSLIADHLKQLRCIDLYGCTKITTVGLERL 382
Query: 321 SGLTNLESINL 331
L +L +NL
Sbjct: 383 MQLPHLGVLNL 393
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 85/165 (51%), Gaps = 6/165 (3%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKLDLE 139
++L+SL+ +FC ++D GL+H + L L+ R + I+ G+ A G L LD+
Sbjct: 233 ADLRSLNLSFCASVTDAGLKHAARMPRLRELNLRSCDNISDLGLAYLAEGGSRLCALDVS 292
Query: 140 RCTRI--HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSG 196
C ++ G L +GL +L SL++ C D + L +L +L + C +VTD G
Sbjct: 293 FCDKVGDQGLLHASQGLFQLRSLSLNACPVSDDGIGRVARSLGDLHTLHLGQCGRVTDKG 352
Query: 197 IAYLK-GLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQ 239
++ + L++L ++L GC +T L+ L L L LNL Q
Sbjct: 353 LSLIADHLKQLRCIDLYGCTKITTVGLERLMQLPHLGVLNLGLWQ 397
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 89/288 (30%), Positives = 136/288 (47%), Gaps = 50/288 (17%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKP--LSGLTNLKSLQIS-CSKVTDSGIA----YLKGL 203
++G+ LE+LN+ C +TD+ + + + +L L +S C ++TD+ + +LKGL
Sbjct: 91 IQGVPNLEALNMIGCFNLTDTWLSHAFVQDVHSLSELNLSMCKQITDNSLGRIAQHLKGL 150
Query: 204 QKLTL-----------------------LNLEGCPVTA-------ACLDSLSALGSLFY- 232
++L L LNL C + A + +A G+L
Sbjct: 151 ERLDLGGCSNVSNTGLLLVAWGLKNLRSLNLRSCRGVSDPGIGHLAGMTPEAAHGTLRLE 210
Query: 233 -LNLNRCQLSDDGCEKFSKIG--SLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-G 287
L L CQ D +F +G L+ LNL F +TD L H + L LNL SC
Sbjct: 211 ALCLQDCQKLTDDALRFVSLGLADLRSLNLSFCASVTDAGLKHAARMPRLRELNLRSCDN 270
Query: 288 IGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLS-GLTNLESINLSFTGISDGSLRKL 344
I D GL L G L L++S +VG GL H S GL L S++L+ +SD + ++
Sbjct: 271 ISDLGLAYLAEGGSRLCALDVSFCDKVGDQGLLHASQGLFQLRSLSLNACPVSDDGIGRV 330
Query: 345 A-GLSSLKSLNL-DARQITDTGLAALT-SLTGLTHLDLFG-ARITDSG 388
A L L +L+L ++TD GL+ + L L +DL+G +IT G
Sbjct: 331 ARSLGDLHTLHLGQCGRVTDKGLSLIADHLKQLRCIDLYGCTKITTVG 378
>gi|261331843|emb|CBH14837.1| leucine-rich repeat protein (LRRP, pseudogene),putative
[Trypanosoma brucei gambiense DAL972]
Length = 1517
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 103/388 (26%), Positives = 159/388 (40%), Gaps = 90/388 (23%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC 91
AL +L L +N W + Q L LS + +TD + H C NL +LD +FC
Sbjct: 624 ALNELNLSDCFEINAGWEALEKLQ--QLHVAILSNTHITDGDISHFSKCKNLVTLDLSFC 681
Query: 92 IQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL 151
++ D + LSN+T+L L+L C++I GL L
Sbjct: 682 DKLLD-----VTALSNITTLE----------------------DLNLSNCSKIRKGLSVL 714
Query: 152 KGLMKLESLNIKWC----------------------NCITDSDMKPLSGLTNLKSLQIS- 188
L +L LN+K NC D+KPLS L L+ L +
Sbjct: 715 GELPRLRVLNVKGVLLEDSVIGSLGNGKSFAKLSLENCKGFGDVKPLSNLVTLEELNLHY 774
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL-SALGSLFYLNLNRCQLSDDGCEK 247
C KVT SG+ L L +L +L+L L+++ ++ L LNL+ C+
Sbjct: 775 CDKVT-SGMGTLGSLPQLRVLDLGRTQADNNSLENICTSSIPLVLLNLSHCK-------- 825
Query: 248 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 307
KI S+ + LT LE LN+D+C G L L+ L
Sbjct: 826 --KITSIST---------------IASLTALEELNIDNCCNVTSGWNVFGTLHQLRVATL 868
Query: 308 SDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 366
S+T++ +R++S +L ++NL+F I+D + L+ ++ L+ LNLD G+
Sbjct: 869 SNTRINDENIRYVSECKSLNTLNLAFCKDITD--VTALSKITMLEELNLDCCHNIRKGIE 926
Query: 367 ALTSLTGLTHLDLFGARITDSGAAYLRS 394
L L ARI Y+ +
Sbjct: 927 TLGKLP--------KARILSMKECYMET 946
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 107/402 (26%), Positives = 171/402 (42%), Gaps = 63/402 (15%)
Query: 37 CLGQYPGVNDKWMDVIA------SQGSSLLSVDLSGSD-VTDSGLIHLKDCSNLQSLDFN 89
CL + +N K+ D+ S+ SL S++LS VTD + L S L+ L+ +
Sbjct: 1038 CLPRLRVLNLKYTDINGDVTKNISESKSLRSLNLSHCKWVTDISV--LSSLSTLEELNIS 1095
Query: 90 FCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLV 149
C QI G E L L L ++ + ITA+ + + LVKL RC + V
Sbjct: 1096 ECEQIRKGW-ESLGKLP-LLRVAILSDTKITAKDIVCLSSCKTLVKLKFFRCEELSDVTV 1153
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTL 208
K + LE L +K C+ +K L+ L L+ + +K + + G L L
Sbjct: 1154 VYK-IQSLEELIVKNCS----DGLKGLNAPGTLPRLRFFASAKCERMLLVHSHGCVFLLL 1208
Query: 209 LNLEGCPVTAACLDS--------------------LSALGSLFYLNLNRCQLSDDGCEKF 248
N+ G ++ + + LS + SL L+L C + G
Sbjct: 1209 RNVRGSDISVESIGTSKSLVRLTIEVGEDLTDTTPLSDITSLEELSLRECGDNLGGVGTL 1268
Query: 249 SKIGSLKVLNLGFNEIT-----DECL------------------VHLKGLTNLESLNLDS 285
K+ LK L+LG ++I+ D CL H+ LT LE LNL
Sbjct: 1269 EKLPRLKSLDLGLSDISNSTLNDICLSRSITSLNLSNNYELTDISHISNLTALEELNLRG 1328
Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSS-GLRHLSGLTNLESINLSFTGISDGSLRKL 344
C G L+ L L+ L L +V + ++S +L ++N+ + ++D S +
Sbjct: 1329 CYHITSGWEALSELPRLRVLNLESARVTTRYDGYYISRCKSLVTLNIQLSDMTDASY--I 1386
Query: 345 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
A + +L+ L++ G +AL +L L LDLF +RITD
Sbjct: 1387 ANIKTLEELHIGECDELRWGFSALFTLPRLRILDLFMSRITD 1428
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 80/276 (28%), Positives = 122/276 (44%), Gaps = 39/276 (14%)
Query: 133 LVKLDLERCTRIHGGLVNLKGL---MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISC 189
L++L++E T GL N++ L + LE L++ CN I D+ + L LK L +S
Sbjct: 531 LLQLNMESIT----GLSNVEALANILTLEKLSLLGCNGI-DAVIGCLGNPPQLKMLDLSG 585
Query: 190 SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 249
+ + + L Q + LNL C + +S+L +L LNL+ C + G E
Sbjct: 586 TNTDNESLRSLCLSQTMVSLNLSHC-WKMTNMSHISSLEALNELNLSDCFEINAGWEALE 644
Query: 250 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE--- 306
K+ L V L ITD + H NL +L+L C + L+++T L N+ LE
Sbjct: 645 KLQQLHVAILSNTHITDGDISHFSKCKNLVTLDLSFC----DKLLDVTALSNITTLEDLN 700
Query: 307 LSDTQVGSSGLRHLSGLTNLESINL-----------------SFTGIS------DGSLRK 343
LS+ GL L L L +N+ SF +S G ++
Sbjct: 701 LSNCSKIRKGLSVLGELPRLRVLNVKGVLLEDSVIGSLGNGKSFAKLSLENCKGFGDVKP 760
Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
L+ L +L+ LNL +G+ L SL L LDL
Sbjct: 761 LSNLVTLEELNLHYCDKVTSGMGTLGSLPQLRVLDL 796
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 96/386 (24%), Positives = 160/386 (41%), Gaps = 65/386 (16%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISD-------GGLEHL---------RGL 105
+DLSG+ V D+ L L DC +L+ L+ ++CIQ++D E L RG+
Sbjct: 353 LDLSGAPVEDNFLKDLCDCGSLERLNLSYCIQLTDINPLSNAAATEELNLNGCRRITRGM 412
Query: 106 SNLTSLSFRR-----NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 160
+ L R + ++ + + LVK+ L+ C G + L ++ LE L
Sbjct: 413 GVVWVLPKLRVLHMKDMHLSEPSLDSVGTGGPLVKVSLDNCAGF-GDMTLLSSIVTLEEL 471
Query: 161 NIK----------------------WCNC-----------ITDSDMKPL--SGLTNLKSL 185
NI+ WC I ++ + L +G+ KSL
Sbjct: 472 NIQKCVDIISGVGCLGTLPYLVYLTWCGLPWYTTVPRVLNIKEAHISSLDFTGICASKSL 531
Query: 186 -QISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
Q++ +T S + L + L L+L GC A + L L L+L+ ++
Sbjct: 532 LQLNMESITGLSNVEALANILTLEKLSLLGCNGIDAVIGCLGNPPQLKMLDLSGTNTDNE 591
Query: 244 GCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
++ LNL ++T+ + H+ L L LNL C + G L L L
Sbjct: 592 SLRSLCLSQTMVSLNLSHCWKMTN--MSHISSLEALNELNLSDCFEINAGWEALEKLQQL 649
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDARQIT 361
LS+T + + H S NL +++LSF + D + L+ +++L+ LNL
Sbjct: 650 HVAILSNTHITDGDISHFSKCKNLVTLDLSFCDKLLD--VTALSNITTLEDLNLSNCSKI 707
Query: 362 DTGLAALTSLTGLTHLDLFGARITDS 387
GL+ L L L L++ G + DS
Sbjct: 708 RKGLSVLGELPRLRVLNVKGVLLEDS 733
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 65/243 (26%), Positives = 108/243 (44%), Gaps = 34/243 (13%)
Query: 94 ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
+ + G HL + L L + + ++ + L NL L+L + +
Sbjct: 242 VDNNGARHLFNIGTLEELVIA--DTMQLANIRGISRLTNLKCLELNSTDIDDSCVRRICA 299
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLE 212
+KL L++ CN I D+ P+S L L+ L + SC +T GI L L +L +L+L
Sbjct: 300 CVKLFKLSVSECNNIMDA--TPISQLAALEELNLNSCYHIT-KGIGTLGMLLRLRVLDLS 356
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRC-QLSD---------------DGCEKFSK------ 250
G PV L L GSL LNL+ C QL+D +GC + ++
Sbjct: 357 GAPVEDNFLKDLCDCGSLERLNLSYCIQLTDINPLSNAAATEELNLNGCRRITRGMGVVW 416
Query: 251 -IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGD----EGLVNLTGLCNLKC 304
+ L+VL++ +++ L + L ++LD+C G GD +V L L KC
Sbjct: 417 VLPKLRVLHMKDMHLSEPSLDSVGTGGPLVKVSLDNCAGFGDMTLLSSIVTLEELNIQKC 476
Query: 305 LEL 307
+++
Sbjct: 477 VDI 479
Score = 45.8 bits (107), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 92/203 (45%), Gaps = 15/203 (7%)
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAY-LKGLQKLTL 208
++ L LE LN++ C IT S + LS L L+ L + ++VT Y + + L
Sbjct: 1314 HISNLTALEELNLRGCYHIT-SGWEALSELPRLRVLNLESARVTTRYDGYYISRCKSLVT 1372
Query: 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 268
LN++ +T A ++ + +L L++ C G + L++L+L + ITDE
Sbjct: 1373 LNIQLSDMTDA--SYIANIKTLEELHIGECDELRWGFSALFTLPRLRILDLFMSRITDED 1430
Query: 269 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC-------LELSDTQVGSSGLRHLS 321
L +++ +E LNL C E L ++T L +K L ++ G R L
Sbjct: 1431 LRNIQPPHTIEELNLSYC----ENLNDITPLGRIKSIKNLHFLLSYDARRLREEGFRSLL 1486
Query: 322 GLTNLESINLSFTGISDGSLRKL 344
L L + + +S LR+L
Sbjct: 1487 ELPCLSWVGVKNAYVSSDILREL 1509
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 68/263 (25%), Positives = 120/263 (45%), Gaps = 35/263 (13%)
Query: 126 AFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
+ + +L +L L C GG+ L+ L +L+SL++ + I++S + + ++ SL
Sbjct: 1243 PLSDITSLEELSLRECGDNLGGVGTLEKLPRLKSLDLGLSD-ISNSTLNDICLSRSITSL 1301
Query: 186 QISCS-KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD-- 242
+S + ++TD I+++ L L LNL GC + ++LS L L LNL +++
Sbjct: 1302 NLSNNYELTD--ISHISNLTALEELNLRGCYHITSGWEALSELPRLRVLNLESARVTTRY 1359
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG S+ SL LN+ +++TD ++ + LE L++ C
Sbjct: 1360 DG-YYISRCKSLVTLNIQLSDMTDAS--YIANIKTLEELHIGECD--------------- 1401
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD-ARQIT 361
EL G L L L ++L + I+D LR + +++ LNL +
Sbjct: 1402 ---ELR------WGFSALFTLPRLRILDLFMSRITDEDLRNIQPPHTIEELNLSYCENLN 1452
Query: 362 D-TGLAALTSLTGLTHLDLFGAR 383
D T L + S+ L L + AR
Sbjct: 1453 DITPLGRIKSIKNLHFLLSYDAR 1475
Score = 43.1 bits (100), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 105/226 (46%), Gaps = 21/226 (9%)
Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
L +LN+ +C ITD + LS +T L+ L + C GI L L K +L+++ C +
Sbjct: 887 LNTLNLAFCKDITD--VTALSKITMLEELNLDCCHNIRKGIETLGKLPKARILSMKECYM 944
Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 276
+++ +LG + + LN + S K + L + +C + L
Sbjct: 945 ETDMRNNVPSLGIVSH--LNSWKASQGTYPKHEGM-------LHGDGYAQQCSI-LGNSK 994
Query: 277 NLESLNLDSCGIGDEGLVNLTGLCNLKCLE--LSDTQVGSSGLRHLSGLTNLESINLSFT 334
+L LNL+ G +++ L N+ LE + D + S L L +NL +T
Sbjct: 995 SLVKLNLER----SMGFISVKALSNIATLEELVLDHAQEVCCIPSFSCLPRLRVLNLKYT 1050
Query: 335 GISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDL 379
I+ + ++ SL+SLNL + +TD ++ L+SL+ L L++
Sbjct: 1051 DINGDVTKNISESKSLRSLNLSHCKWVTD--ISVLSSLSTLEELNI 1094
>gi|428304289|ref|YP_007141114.1| hypothetical protein Cri9333_0667 [Crinalium epipsammum PCC 9333]
gi|428245824|gb|AFZ11604.1| leucine-rich repeat-containing protein [Crinalium epipsammum PCC
9333]
Length = 382
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 109/369 (29%), Positives = 165/369 (44%), Gaps = 79/369 (21%)
Query: 13 ELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDS 72
++ + + S F+D L+ + Q G DK + + A Q + ++L ++T
Sbjct: 70 RVIAKKPVKVQSAVKFKDARLEK-AIRQQLGTGDKPLTLNALQ--RVKHLNLINKEIT-- 124
Query: 73 GLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLIN 132
L ++ NL L F +ISD L LRGL+NLT+L RN +K L N
Sbjct: 125 SLEGIQALRNLTELRFGEN-KISD--LAPLRGLTNLTTLHLYRNQI---SDVKPLLSLRN 178
Query: 133 LVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKV 192
L L+L N I SD+KPL+GLT L +L + +K+
Sbjct: 179 LTSLELS-------------------------SNPI--SDLKPLAGLTKLTTLGLGGNKI 211
Query: 193 TDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG 252
TD + L GL LT L L G ++ L L+ L +L L L+ ++SD
Sbjct: 212 TD--LKPLAGLANLTTLELSGNKISD--LKPLAGLANLTKLYLSGNKISD---------- 257
Query: 253 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 312
L + GLT L L LD+ I D + L GL NL L L + ++
Sbjct: 258 ----------------LKPVAGLTKLTKLWLDNNQISD--VQPLAGLINLTFLSLDNNKI 299
Query: 313 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 372
++ L+ LT+L + LS ISD + L GL+ L L+L+ +I+D +T L
Sbjct: 300 ND--VQPLANLTSLMGLGLSLNKISD--VTPLRGLTKLNWLDLNLNKISD-----VTPLA 350
Query: 373 GLTHLDLFG 381
GLT+L++ G
Sbjct: 351 GLTNLNVNG 359
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/188 (35%), Positives = 100/188 (53%), Gaps = 16/188 (8%)
Query: 200 LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 259
L LQ++ LNL +T+ L+ + AL +L L ++SD + +L L+L
Sbjct: 107 LNALQRVKHLNLINKEITS--LEGIQALRNLTELRFGENKISD--LAPLRGLTNLTTLHL 162
Query: 260 GFNEITD-ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 318
N+I+D + L+ L+ LT+LE L S I D L L GL L L L ++ + L+
Sbjct: 163 YRNQISDVKPLLSLRNLTSLE---LSSNPISD--LKPLAGLTKLTTLGLGGNKI--TDLK 215
Query: 319 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 378
L+GL NL ++ LS ISD L+ LAGL++L L L +I+D L + LT LT L
Sbjct: 216 PLAGLANLTTLELSGNKISD--LKPLAGLANLTKLYLSGNKISD--LKPVAGLTKLTKLW 271
Query: 379 LFGARITD 386
L +I+D
Sbjct: 272 LDNNQISD 279
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 59/151 (39%), Positives = 76/151 (50%), Gaps = 11/151 (7%)
Query: 237 RCQL-SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
R QL + D + + +K LNL EIT L ++ L NL L I D L
Sbjct: 95 RQQLGTGDKPLTLNALQRVKHLNLINKEIT--SLEGIQALRNLTELRFGENKISD--LAP 150
Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355
L GL NL L L Q+ S ++ L L NL S+ LS ISD L+ LAGL+ L +L L
Sbjct: 151 LRGLTNLTTLHLYRNQI--SDVKPLLSLRNLTSLELSSNPISD--LKPLAGLTKLTTLGL 206
Query: 356 DARQITDTGLAALTSLTGLTHLDLFGARITD 386
+ITD L L L LT L+L G +I+D
Sbjct: 207 GGNKITD--LKPLAGLANLTTLELSGNKISD 235
>gi|426371210|ref|XP_004052544.1| PREDICTED: F-box/LRR-repeat protein 14 [Gorilla gorilla gorilla]
Length = 307
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 97/311 (31%), Positives = 159/311 (51%), Gaps = 53/311 (17%)
Query: 78 KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLD 137
K+ +L++L+ + C QI+D L + AQ +K L L+
Sbjct: 20 KEIGSLRALNLSLCKQITDSSLGRI------------------AQYLKG------LEVLE 55
Query: 138 LERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LKSLQI 187
L C+ I G L+ GL +L+SLN++ C ++D + L+G+T L+ L +
Sbjct: 56 LGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLEQLTL 115
Query: 188 S-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDD 243
C K+TD + ++ +GL L LLNL C ++ A L LS +GSL LNL C +SD
Sbjct: 116 QDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDT 175
Query: 244 GCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGLVNLT-- 297
G + +GSL++ L++ F +++ D+ L ++ +GL L+SL+L SC I D+G+ +
Sbjct: 176 GIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQ 234
Query: 298 --GLCNL---KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
GL L +C+ ++D + HLS LT ++ T I+ L ++ L LK
Sbjct: 235 MHGLRTLNIGQCVRITDKGLELIA-EHLSQLTGIDLYG--CTRITKRGLERITQLPCLKV 291
Query: 353 LNLDARQITDT 363
LNL Q+TD+
Sbjct: 292 LNLGLWQMTDS 302
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 82/250 (32%), Positives = 130/250 (52%), Gaps = 29/250 (11%)
Query: 152 KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKL 206
K + L +LN+ C ITDS + ++ LK L++ CS +T++G+ + GLQ+L
Sbjct: 20 KEIGSLRALNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRL 77
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 266
LNL C LS +G + R + +GC +G ++ ++TD
Sbjct: 78 KSLNLRSCR-------HLSDVGIGHLAGMTRS--AAEGC-----LGLEQLTLQDCQKLTD 123
Query: 267 ECLVHL-KGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLEL-SDTQVGSSGLRHLS-G 322
L H+ +GLT L LNL CG I D GL++L+ + +L+ L L S + +G+ HL+ G
Sbjct: 124 LSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMG 183
Query: 323 LTNLESINLSFT-GISDGSLRKLA-GLSSLKSLNLDARQITDTGLAALT-SLTGLTHLDL 379
L +++SF + D SL +A GL LKSL+L + I+D G+ + + GL L++
Sbjct: 184 SLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNI 243
Query: 380 FG-ARITDSG 388
RITD G
Sbjct: 244 GQCVRITDKG 253
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 103/204 (50%), Gaps = 29/204 (14%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ + + L+ L+ +FC ISD GL HL + +L SL+ R + I+ G+
Sbjct: 121 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 180
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C ++ + +GL L+SL++ C+ D + + + L++
Sbjct: 181 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 240
Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
L I C ++TD G+ + + L +LT ++L GC +++
Sbjct: 241 LNIGQCVRITDKGLELIAEHLSQLTGIDLYGCT-----------------------RITK 277
Query: 243 DGCEKFSKIGSLKVLNLGFNEITD 266
G E+ +++ LKVLNLG ++TD
Sbjct: 278 RGLERITQLPCLKVLNLGLWQMTD 301
>gi|290972751|ref|XP_002669114.1| predicted protein [Naegleria gruberi]
gi|284082657|gb|EFC36370.1| predicted protein [Naegleria gruberi]
Length = 259
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 64/252 (25%), Positives = 132/252 (52%), Gaps = 15/252 (5%)
Query: 105 LSNLTSLSFRRNNAITAQGMKAF-AGLINLVKLDLERCTRIHGGLVNLKGLM---KLESL 160
L N+T+L F+R + AF L+NL+K + T I+ + ++G M K+E L
Sbjct: 8 LQNVTNLLFKRE-------IGAFDYKLLNLMK-GITTLT-INYNSIGVEGAMHISKMEQL 58
Query: 161 -NIKWCNCI-TDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
N+ CN + + K +S L LK L I + + +G Y+ G+++LT L++ +
Sbjct: 59 TNLDICNSVLYEEGAKYISQLEQLKCLDIGSNSIGKNGAKYISGMKQLTRLDIFNNTICE 118
Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 278
S+S + L +L + + +G + S++ L L++ N+I + ++ + L
Sbjct: 119 EGAKSISEMKQLTHLKITFNDIGTEGAKYISQLRKLTHLDISSNDIGAKGSKYISEMNQL 178
Query: 279 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
LN+ + IG+EG+ +++ + L L++ D ++ + G++++SG+ L ++++S+ I D
Sbjct: 179 TILNIYNNDIGNEGVKHISEMNQLTRLDIGDNEISAEGVKYISGMKQLTNLDISWNNIGD 238
Query: 339 GSLRKLAGLSSL 350
+ L+ + L
Sbjct: 239 EGAQFLSQMKQL 250
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 104/210 (49%), Gaps = 2/210 (0%)
Query: 98 GLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
G H+ + LT+L N+ + +G K + L L LD+ + G + G+ +L
Sbjct: 48 GAMHISKMEQLTNLDIC-NSVLYEEGAKYISQLEQLKCLDIGSNSIGKNGAKYISGMKQL 106
Query: 158 ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
L+I + N I + K +S + L L+I+ + + G Y+ L+KLT L++ +
Sbjct: 107 TRLDI-FNNTICEEGAKSISEMKQLTHLKITFNDIGTEGAKYISQLRKLTHLDISSNDIG 165
Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 277
A +S + L LN+ + ++G + S++ L L++G NEI+ E + ++ G+
Sbjct: 166 AKGSKYISEMNQLTILNIYNNDIGNEGVKHISEMNQLTRLDIGDNEISAEGVKYISGMKQ 225
Query: 278 LESLNLDSCGIGDEGLVNLTGLCNLKCLEL 307
L +L++ IGDEG L+ + L LE
Sbjct: 226 LTNLDISWNNIGDEGAQFLSQMKQLIYLEF 255
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 107/221 (48%)
Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
D K L+ + + +L I+ + + G ++ +++LT L++ + +S L L
Sbjct: 24 DYKLLNLMKGITTLTINYNSIGVEGAMHISKMEQLTNLDICNSVLYEEGAKYISQLEQLK 83
Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
L++ + +G + S + L L++ N I +E + + L L + IG E
Sbjct: 84 CLDIGSNSIGKNGAKYISGMKQLTRLDIFNNTICEEGAKSISEMKQLTHLKITFNDIGTE 143
Query: 292 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 351
G ++ L L L++S +G+ G +++S + L +N+ I + ++ ++ ++ L
Sbjct: 144 GAKYISQLRKLTHLDISSNDIGAKGSKYISEMNQLTILNIYNNDIGNEGVKHISEMNQLT 203
Query: 352 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
L++ +I+ G+ ++ + LT+LD+ I D GA +L
Sbjct: 204 RLDIGDNEISAEGVKYISGMKQLTNLDISWNNIGDEGAQFL 244
>gi|302754944|ref|XP_002960896.1| hypothetical protein SELMODRAFT_75506 [Selaginella moellendorffii]
gi|300171835|gb|EFJ38435.1| hypothetical protein SELMODRAFT_75506 [Selaginella moellendorffii]
Length = 637
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 104/409 (25%), Positives = 181/409 (44%), Gaps = 60/409 (14%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
LQ + L G++D + +AS L ++D+S +++TD G+ L + +L+ L+ C
Sbjct: 171 LQVVVLKGCVGISDAGLCFLASNCKELTTIDVSYTEITDDGVRCLSNLPSLRVLNLAACS 230
Query: 93 QISDGGLEH------------LRGLSNL-------TSLSF---------RRNNAITAQGM 124
+ D GL R ++N+ SL F ++ + IT Q +
Sbjct: 231 NVGDAGLTRTSTSLLELDLSCCRSVTNVGISFLSKRSLQFLKLGFCSPVKKRSQITGQLL 290
Query: 125 KAFAGLINLVKLDLERCTRIHGGLVNLKG--LMKLESLNIKWCNCITDSDMKPL-SGLTN 181
+A L + L L C I G + G ++L L++ C +TDS M + G N
Sbjct: 291 EAVGKLTQIQTLKLAGC-EIAGDGLRFVGSCCLQLSDLSLSKCRGVTDSGMASIFHGCKN 349
Query: 182 LKSLQISC----SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL----GSLFYL 233
L+ L ++C +++T IA + L L +E C + +++ L L L
Sbjct: 350 LRKLDLTCCLDLTEITACNIA--RSSAGLVSLKIEACRILTE--NNIPLLMERCSCLEEL 405
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL-KGLTNLESLNLDSCG-IGDE 291
++ C + D G E +K LK L LGF +++D + H+ + ++L L+L G +GD
Sbjct: 406 DVTDCNIDDAGLECIAKCKFLKTLKLGFCKVSDNGIEHVGRNCSDLIELDLYRSGNVGDA 465
Query: 292 GLVNLTGLC------NLK-CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 344
G+ ++ C NL C ++D + S + LS L LE G+ +KL
Sbjct: 466 GVASIAAGCRKLRILNLSYCPNITDASIVS--ISQLSHLQQLEIRGCKGVGLE----KKL 519
Query: 345 AGLSSLKSLNLDARQITDTGLAALTS-LTGLTHLDLFGARITDSGAAYL 392
+L L+L I D G+ ++ L L+L RI+++ L
Sbjct: 520 PEFKNLVELDLKHCGIGDRGMTSIVHCFPNLQQLNLSYCRISNAALVML 568
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 112/389 (28%), Positives = 168/389 (43%), Gaps = 86/389 (22%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLS--NLTSLSFRRNNAITAQGMKAFA---------- 128
+ ++SLD + CI+I+D L + L+ L SL R T G+ A A
Sbjct: 65 TGIESLDLSSCIKITDEDLALVGELAGTRLRSLGLARMGGFTVAGIVALARDCSALVELD 124
Query: 129 ----------------GLINLVKLDLERCTRIH-GGLVNLK-GLMKLESLNIKWCNCITD 170
L NL KLDL C I GL L G KL+ + +K C I+D
Sbjct: 125 LRCCNSLGDLELAAVCQLGNLRKLDLTGCYMISDAGLGCLAAGCKKLQVVVLKGCVGISD 184
Query: 171 SDMKPL-SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALG 228
+ + L S L ++ +S +++TD G+ L L L +LNL C V A L S
Sbjct: 185 AGLCFLASNCKELTTIDVSYTEITDDGVRCLSNLPSLRVLNLAACSNVGDAGLTRTST-- 242
Query: 229 SLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF-------NEITDECLVHLKGLTNLES 280
SL L+L+ C+ +++ G SK SL+ L LGF ++IT + L + LT +++
Sbjct: 243 SLLELDLSCCRSVTNVGISFLSK-RSLQFLKLGFCSPVKKRSQITGQLLEAVGKLTQIQT 301
Query: 281 LNLDSCGIGDEGLVNLTGLCNLKCLELSD---------TQVGSSGLRHLSGLTNLESINL 331
L L C I +GL G C CL+LSD T G + + H G NL ++L
Sbjct: 302 LKLAGCEIAGDGL-RFVGSC---CLQLSDLSLSKCRGVTDSGMASIFH--GCKNLRKLDL 355
Query: 332 S----FTGISDGSL-RKLAGLSSLK-----------------------SLNLDARQITDT 363
+ T I+ ++ R AGL SLK L++ I D
Sbjct: 356 TCCLDLTEITACNIARSSAGLVSLKIEACRILTENNIPLLMERCSCLEELDVTDCNIDDA 415
Query: 364 GLAALTSLTGLTHLDLFGARITDSGAAYL 392
GL + L L L +++D+G ++
Sbjct: 416 GLECIAKCKFLKTLKLGFCKVSDNGIEHV 444
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 107/383 (27%), Positives = 164/383 (42%), Gaps = 87/383 (22%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSD-VTDSGLIHLKDCSNLQSLDFNFC 91
L+ L L + G + +A S+L+ +DL + + D L + NL+ LD C
Sbjct: 94 LRSLGLARMGGFTVAGIVALARDCSALVELDLRCCNSLGDLELAAVCQLGNLRKLDLTGC 153
Query: 92 IQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL 151
ISD GL L A G K
Sbjct: 154 YMISDAGLGCL------------------AAGCK-------------------------- 169
Query: 152 KGLMKLESLNIKWCNCITDSDMKPL-SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
KL+ + +K C I+D+ + L S L ++ +S +++TD G+ L L L +LN
Sbjct: 170 ----KLQVVVLKGCVGISDAGLCFLASNCKELTTIDVSYTEITDDGVRCLSNLPSLRVLN 225
Query: 211 LEGCP-VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF------- 261
L C V A L S SL L+L+ C+ +++ G SK SL+ L LGF
Sbjct: 226 LAACSNVGDAGLTRTST--SLLELDLSCCRSVTNVGISFLSK-RSLQFLKLGFCSPVKKR 282
Query: 262 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD---------TQV 312
++IT + L + LT +++L L C I +GL G C CL+LSD T
Sbjct: 283 SQITGQLLEAVGKLTQIQTLKLAGCEIAGDGL-RFVGSC---CLQLSDLSLSKCRGVTDS 338
Query: 313 GSSGLRHLSGLTNLESINLS----FTGISDGSL-RKLAGLSSLKSLNLDA-RQITDTGLA 366
G + + H G NL ++L+ T I+ ++ R AGL SLK ++A R +T+ +
Sbjct: 339 GMASIFH--GCKNLRKLDLTCCLDLTEITACNIARSSAGLVSLK---IEACRILTENNIP 393
Query: 367 ALTS-LTGLTHLDLFGARITDSG 388
L + L LD+ I D+G
Sbjct: 394 LLMERCSCLEELDVTDCNIDDAG 416
>gi|290983896|ref|XP_002674664.1| predicted protein [Naegleria gruberi]
gi|284088255|gb|EFC41920.1| predicted protein [Naegleria gruberi]
Length = 374
Score = 74.7 bits (182), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 76/312 (24%), Positives = 135/312 (43%), Gaps = 27/312 (8%)
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW 164
+ +LT L + N + K L L+ LD+ + + + L +L LN+
Sbjct: 32 MKSLTDLRISKINFVEMS--KYLISLDQLISLDISKSLITDSIVEPISKLKQLTYLNVS- 88
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
N I + + +S L L +L IS ++ + + Y+ ++KLT LN+ G + + +
Sbjct: 89 DNSIGNYGVMHISKLEQLTNLVISKNRFGMNCLKYITNMRKLTSLNINGNDIGNIAFEDI 148
Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL--------------- 269
+ L LN+N + D G K+ L L + N I +E +
Sbjct: 149 IKMKQLTSLNVNNINIGDKGAFHVGKLKHLTSLAIAKNGIHEEGVKFINELPQVTDLDIF 208
Query: 270 ---------VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 320
++ + L LN++SC IGDEG L+GL L L +S + + G++ +
Sbjct: 209 GISFGPGGAKYIGEMKQLTKLNINSCRIGDEGATYLSGLTKLTKLSISSNSISAIGVKFI 268
Query: 321 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 380
L L +++S I + ++GL L L++ + D G + + LT+LD+
Sbjct: 269 RELKLLTFLDISINNIGQQGSQYVSGLDKLAHLSIHRNNLGDEGARHIGDMKWLTNLDIN 328
Query: 381 GARITDSGAAYL 392
I+D GA Y
Sbjct: 329 CNSISDEGALYF 340
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 86/346 (24%), Positives = 152/346 (43%), Gaps = 43/346 (12%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDG-----GLEHLRGLSNLTSLSF 113
L+S+D+S S +TDS ++ S L+ L + + +SD G+ H+ L LT+L
Sbjct: 58 LISLDISKSLITDS---IVEPISKLKQLTY---LNVSDNSIGNYGVMHISKLEQLTNLVI 111
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE---SLNIKWCNCITD 170
+N GM + N+ KL G + + ++K++ SLN+ N I D
Sbjct: 112 SKNRF----GMNCLKYITNMRKLTSLNINGNDIGNIAFEDIIKMKQLTSLNVNNIN-IGD 166
Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
+ L +L SL I+ + + + G+ ++ L ++T L++ G + + L
Sbjct: 167 KGAFHVGKLKHLTSLAIAKNGIHEEGVKFINELPQVTDLDIFGISFGPGGAKYIGEMKQL 226
Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
LN+N C++ D+G +L GLT L L++ S I
Sbjct: 227 TKLNINSCRIGDEGA------------------------TYLSGLTKLTKLSISSNSISA 262
Query: 291 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 350
G+ + L L L++S +G G +++SGL L +++ + D R + + L
Sbjct: 263 IGVKFIRELKLLTFLDISINNIGQQGSQYVSGLDKLAHLSIHRNNLGDEGARHIGDMKWL 322
Query: 351 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRSKF 396
+L+++ I+D G + L LT D+ G I D A L F
Sbjct: 323 TNLDINCNSISDEGALYFSDLKQLTSFDISGNNICDEVANRLIKIF 368
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 116/242 (47%), Gaps = 3/242 (1%)
Query: 154 LMK-LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
+MK L L I N + S K L L L SL IS S +TDS + + L++LT LN+
Sbjct: 31 MMKSLTDLRISKINFVEMS--KYLISLDQLISLDISKSLITDSIVEPISKLKQLTYLNVS 88
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
+ + +S L L L +++ + + + + + L LN+ N+I + +
Sbjct: 89 DNSIGNYGVMHISKLEQLTNLVISKNRFGMNCLKYITNMRKLTSLNINGNDIGNIAFEDI 148
Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 332
+ L SLN+++ IGD+G ++ L +L L ++ + G++ ++ L + +++
Sbjct: 149 IKMKQLTSLNVNNINIGDKGAFHVGKLKHLTSLAIAKNGIHEEGVKFINELPQVTDLDIF 208
Query: 333 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
G + + + L LN+++ +I D G L+ LT LT L + I+ G ++
Sbjct: 209 GISFGPGGAKYIGEMKQLTKLNINSCRIGDEGATYLSGLTKLTKLSISSNSISAIGVKFI 268
Query: 393 RS 394
R
Sbjct: 269 RE 270
>gi|290981770|ref|XP_002673604.1| hypothetical protein NAEGRDRAFT_58930 [Naegleria gruberi]
gi|284087189|gb|EFC40860.1| hypothetical protein NAEGRDRAFT_58930 [Naegleria gruberi]
Length = 494
Score = 74.7 bits (182), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 86/361 (23%), Positives = 154/361 (42%), Gaps = 54/361 (14%)
Query: 37 CLGQYPGVNDKWMD-----VIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC 91
CL Q+ +N + + I + L +D+ S + G + + +L SLD N
Sbjct: 147 CLEQFESMNVRGISRLQFYKIFEKTKQLTKLDIGKSIIWLEGFKSITELKHLNSLDMNNM 206
Query: 92 IQISDGG----LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGG 147
+ + LE + L LT L+ NN G F + N+ +L
Sbjct: 207 VFMEKESKLELLESISQLHQLTCLNISSNNV----GFNTFKPIGNVKQLTY--------- 253
Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 207
L++ W N I+D K LS L+ L L ++C+ + G Y+ L KL
Sbjct: 254 ------------LDVSW-NYISDEGAKVLSQLSQLTHLNVNCTIIGIEGAKYISKLTKLR 300
Query: 208 LL-------NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG 260
L +EGC S + L L+++ + + G + SK+ L LN+
Sbjct: 301 TLIAARNNFWIEGCQY-------FSEMEQLTALDVSHNSIGNTGIKYLSKMKQLTELNIN 353
Query: 261 FNEI----TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 316
N I T+E + ++ L+ L L++ S IG EG+ ++ + L+ L + ++G +G
Sbjct: 354 DNAINQFGTEESKL-IRELSQLTKLSISSNNIGIEGVTAISTMSQLRTLNIFFNRIGLAG 412
Query: 317 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 376
+ +SG+ NL +++ I ++++ + L L++ I + G AL S+ L
Sbjct: 413 AKLISGMQNLTVLDICNNDIGTNGAKEISKMKQLTKLDIARNMIGNEGAKALKSMKQLKS 472
Query: 377 L 377
L
Sbjct: 473 L 473
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 94/193 (48%), Gaps = 3/193 (1%)
Query: 203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 262
L +LT LN+ V + + L YL+++ +SD+G + S++ L LN+
Sbjct: 224 LHQLTCLNISSNNVGFNTFKPIGNVKQLTYLDVSWNYISDEGAKVLSQLSQLTHLNVNCT 283
Query: 263 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 322
I E ++ LT L +L EG + + L L++S +G++G+++LS
Sbjct: 284 IIGIEGAKYISKLTKLRTLIAARNNFWIEGCQYFSEMEQLTALDVSHNSIGNTGIKYLSK 343
Query: 323 LTNLESINLSFTGISDGSLRK---LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
+ L +N++ I+ + + LS L L++ + I G+ A+++++ L L++
Sbjct: 344 MKQLTELNINDNAINQFGTEESKLIRELSQLTKLSISSNNIGIEGVTAISTMSQLRTLNI 403
Query: 380 FGARITDSGAAYL 392
F RI +GA +
Sbjct: 404 FFNRIGLAGAKLI 416
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 64/277 (23%), Positives = 116/277 (41%), Gaps = 27/277 (9%)
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGG-----LVNLKGLMKLESLNIKWCNCITDSDM 173
I +G K+ L +L LD+ + L ++ L +L LNI N + +
Sbjct: 184 IWLEGFKSITELKHLNSLDMNNMVFMEKESKLELLESISQLHQLTCLNIS-SNNVGFNTF 242
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
KP+ + L L +S + ++D G L L +LT LN+ + +S L L L
Sbjct: 243 KPIGNVKQLTYLDVSWNYISDEGAKVLSQLSQLTHLNVNCTIIGIEGAKYISKLTKLRTL 302
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
R +GC+ FS++ L L++ N I + + +L + L LN++ I
Sbjct: 303 IAARNNFWIEGCQYFSEMEQLTALDVSHNSIGNTGIKYLSKMKQLTELNINDNAIN---- 358
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
Q G+ + + L+ L +++S I + ++ +S L++L
Sbjct: 359 -----------------QFGTEESKLIRELSQLTKLSISSNNIGIEGVTAISTMSQLRTL 401
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 390
N+ +I G ++ + LT LD+ I +GA
Sbjct: 402 NIFFNRIGLAGAKLISGMQNLTVLDICNNDIGTNGAK 438
>gi|290981112|ref|XP_002673275.1| predicted protein [Naegleria gruberi]
gi|284086857|gb|EFC40531.1| predicted protein [Naegleria gruberi]
Length = 461
Score = 74.7 bits (182), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 105/425 (24%), Positives = 185/425 (43%), Gaps = 100/425 (23%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L +D++ SD+ + + L NL+ L+ I D GLE L L LT L+ R NN
Sbjct: 4 LKRLDIASSDIGNEQVKILSQFKNLELLNLGDN-HIKDEGLELLSDLKGLTLLNIR-NNR 61
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRI-------------HGGLVNLKG------------ 153
I + +++ + NL L++++ RI H +N+ G
Sbjct: 62 I--ESVESICKMKNLTHLNIKK-NRIGDLGIEEIAENLNHLIYLNVSGCGITSCKPISEK 118
Query: 154 LMKLESLNIKWCNCITD-----SDMKPL------------------SGLTNLKSLQISCS 190
L L+SLNI N + ++MK L S L L +L I+ +
Sbjct: 119 LQYLKSLNINRNNLGSKGAQNVAEMKQLTCLSIGNNHIHAKGALYISRLEKLTALCINGN 178
Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 250
++ D G Y+ +++LT L+++ + ++S S + +L YLNL +++ +G +K
Sbjct: 179 RIGDVGAEYIIKMKQLTFLDMQYNQIENVMVES-SEITNLTYLNLGYNKITTNGLVSITK 237
Query: 251 IGSLKVLNLGFNEITD----ECLVHLKGL-----------------TNLESLNLDSCGIG 289
+ LK L L +N D E + HLK L T+L SL + I
Sbjct: 238 LDQLKSLYLHYNYYLDPNLLERMKHLKKLDISKNFTQNEFKSICEMTHLTSLIVPRNSIN 297
Query: 290 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 349
G+ ++T L +L L++ + ++G++G +S + +L + + + I R ++ L +
Sbjct: 298 KTGIQSITELKHLTELDIENNEIGTTGAEKISEMKHLLILKIDYNNICSEGARFISQLPN 357
Query: 350 LKSLNLDAR-------------------------QITDTGLAALTSLTGLTHLDLFGARI 384
L +L++ A +I D G+ A++ LT LT L + G +
Sbjct: 358 LTALSIGANNIRTVGAKYIGQMSQLTELRIYSDYEIGDEGVKAISRLTRLTKLHINGIGM 417
Query: 385 TDSGA 389
TD GA
Sbjct: 418 TDEGA 422
Score = 44.7 bits (104), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 79/157 (50%), Gaps = 9/157 (5%)
Query: 241 SDDGCEK---FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
SD G E+ S+ +L++LNLG N I DE L L L L LN+ + I E + ++
Sbjct: 12 SDIGNEQVKILSQFKNLELLNLGDNHIKDEGLELLSDLKGLTLLNIRNNRI--ESVESIC 69
Query: 298 GLCNLKCLELSDTQVGSSGLRHLS-GLTNLESINLSFTGISDGSLRKLA-GLSSLKSLNL 355
+ NL L + ++G G+ ++ L +L +N+S GI+ S + ++ L LKSLN+
Sbjct: 70 KMKNLTHLNIKKNRIGDLGIEEIAENLNHLIYLNVSGCGIT--SCKPISEKLQYLKSLNI 127
Query: 356 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
+ + G + + LT L + I GA Y+
Sbjct: 128 NRNNLGSKGAQNVAEMKQLTCLSIGNNHIHAKGALYI 164
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 57/112 (50%), Gaps = 3/112 (2%)
Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 334
+ +L+ L++ S IG+E + L+ NL+ L L D + GL LS L L +N+
Sbjct: 1 MKHLKRLDIASSDIGNEQVKILSQFKNLELLNLGDNHIKDEGLELLSDLKGLTLLNIRNN 60
Query: 335 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT-SLTGLTHLDLFGARIT 385
I S+ + + +L LN+ +I D G+ + +L L +L++ G IT
Sbjct: 61 RIE--SVESICKMKNLTHLNIKKNRIGDLGIEEIAENLNHLIYLNVSGCGIT 110
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
+LK L+++ + +G+ ++ LS NLE +NL I D L L+ L L LN+ +I
Sbjct: 3 HLKRLDIASSDIGNEQVKILSQFKNLELLNLGDNHIKDEGLELLSDLKGLTLLNIRNNRI 62
Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSG 388
+ ++ + LTHL++ RI D G
Sbjct: 63 --ESVESICKMKNLTHLNIKKNRIGDLG 88
>gi|363728137|ref|XP_003640464.1| PREDICTED: F-box/LRR-repeat protein 14 [Gallus gallus]
Length = 399
Score = 74.7 bits (182), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 105/314 (33%), Positives = 161/314 (51%), Gaps = 36/314 (11%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM ++ L+L C + G + + L S
Sbjct: 67 RGIRRVQILSLRRSLSYVIQGMA------DIESLNLSGCYNLTDNGLGHAFVAEISSLRS 120
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LN+ C ITDS + ++ LK L++ CS +T++G+ + GLQ+L LNL C
Sbjct: 121 LNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSC 178
Query: 215 PVTA-------ACLDSLSALG--SLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-N 262
+ A + +A G L L L CQ LSD + ++ +G L+ LNL F
Sbjct: 179 RHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLSDLSLKHLARGLGRLRQLNLSFCG 238
Query: 263 EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRH 319
I+D L+HL +++L SLNL SC I D G+++L G L L++S +VG L +
Sbjct: 239 GISDAGLLHLSHMSSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAY 298
Query: 320 LS-GLTNLESINLSFTGISD-GSLRKLAGLSSLKSLNL-DARQITDTGLAALTS-LTGLT 375
++ GL L S++L ISD G R + + L++LN+ +ITD GL + L+ LT
Sbjct: 299 IAQGLDGLRSLSLCSCHISDEGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLT 358
Query: 376 HLDLFG-ARITDSG 388
+DL+G RIT G
Sbjct: 359 GIDLYGCTRITKRG 372
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 97/315 (30%), Positives = 167/315 (53%), Gaps = 32/315 (10%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
++ ++++SL+ + C ++D GL H + +S+L SL+ IT + A + L
Sbjct: 85 IQGMADIESLNLSGCYNLTDNGLGHAFVAEISSLRSLNLSLCKQITDSSLGRIAQYLKGL 144
Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LK 183
L+L C+ I G L+ GL +L+SLN++ C ++D + L+G+T L+
Sbjct: 145 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLE 204
Query: 184 SLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-Q 239
L + C K++D + +L +GL +L LNL C ++ A L LS + SL LNL C
Sbjct: 205 QLTLQDCQKLSDLSLKHLARGLGRLRQLNLSFCGGISDAGLLHLSHMSSLRSLNLRSCDN 264
Query: 240 LSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGL-- 293
+SD G + +GSL++ L++ F +++ D+ L ++ +GL L SL+L SC I DEG+
Sbjct: 265 ISDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLRSLSLCSCHISDEGINR 323
Query: 294 --VNLTGLCNL---KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 348
+ GL L +C+ ++D + HLS LT ++ T I+ L ++ L
Sbjct: 324 MVRQMHGLRTLNIGQCVRITDKGLELIA-EHLSQLTGIDLYG--CTRITKRGLERITQLP 380
Query: 349 SLKSLNLDARQITDT 363
LK LNL ++T++
Sbjct: 381 CLKVLNLGLWEMTES 395
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 91/202 (45%), Gaps = 51/202 (25%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
++D+GL+HL S+L+SL+ C ISD G+ HL
Sbjct: 240 ISDAGLLHLSHMSSLRSLNLRSCDNISDTGIMHL------------------------AM 275
Query: 129 GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
G + L LD+ C ++ + +GL L SL++ C+ + + + + L++L
Sbjct: 276 GSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLRSLSLCSCHISDEGINRMVRQMHGLRTLN 335
Query: 187 I-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 244
I C ++TD G+ + + L +LT ++L GC +++ G
Sbjct: 336 IGQCVRITDKGLELIAEHLSQLTGIDLYGCT-----------------------RITKRG 372
Query: 245 CEKFSKIGSLKVLNLGFNEITD 266
E+ +++ LKVLNLG E+T+
Sbjct: 373 LERITQLPCLKVLNLGLWEMTE 394
>gi|290996873|ref|XP_002681006.1| predicted protein [Naegleria gruberi]
gi|284094629|gb|EFC48262.1| predicted protein [Naegleria gruberi]
Length = 207
Score = 74.7 bits (182), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 98/190 (51%)
Query: 203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 262
+++LT LN+ G + +S + L L+++R ++ +G + S++ L LN+ +N
Sbjct: 1 MKQLTSLNIGGNEIGVEGAKYMSEMKHLTSLDIHRNEIGVEGSKFISEMKHLTSLNIYYN 60
Query: 263 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 322
EI E ++ + +L SLN+ IG EG ++ + L L ++D ++G G + +S
Sbjct: 61 EIGVEGSKYISEMKHLTSLNIGDNEIGVEGSKYISEMKQLTSLNIADNEIGVEGSKFISE 120
Query: 323 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 382
+ +L S+ + + I + ++ + L SLN+ QI D G ++ + LT L++
Sbjct: 121 MKHLTSLYIYYNEIGVEGAKFISEMKHLTSLNISGNQIGDEGSKFISEMKSLTSLNIGDN 180
Query: 383 RITDSGAAYL 392
I GA ++
Sbjct: 181 EIGVEGAKFI 190
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 100/201 (49%)
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
+ L SL I +++ G Y+ ++ LT L++ + +S + L LN+
Sbjct: 1 MKQLTSLNIGGNEIGVEGAKYMSEMKHLTSLDIHRNEIGVEGSKFISEMKHLTSLNIYYN 60
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
++ +G + S++ L LN+G NEI E ++ + L SLN+ IG EG ++
Sbjct: 61 EIGVEGSKYISEMKHLTSLNIGDNEIGVEGSKYISEMKQLTSLNIADNEIGVEGSKFISE 120
Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
+ +L L + ++G G + +S + +L S+N+S I D + ++ + SL SLN+
Sbjct: 121 MKHLTSLYIYYNEIGVEGAKFISEMKHLTSLNISGNQIGDEGSKFISEMKSLTSLNIGDN 180
Query: 359 QITDTGLAALTSLTGLTHLDL 379
+I G ++ + LT L++
Sbjct: 181 EIGVEGAKFISGMKQLTSLNI 201
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 102/227 (44%), Gaps = 26/227 (11%)
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW 164
+ LTSL+ N I +G K + + +L LD+ R
Sbjct: 1 MKQLTSLNIG-GNEIGVEGAKYMSEMKHLTSLDIHR------------------------ 35
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
N I K +S + +L SL I +++ G Y+ ++ LT LN+ + +
Sbjct: 36 -NEIGVEGSKFISEMKHLTSLNIYYNEIGVEGSKYISEMKHLTSLNIGDNEIGVEGSKYI 94
Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284
S + L LN+ ++ +G + S++ L L + +NEI E + + +L SLN+
Sbjct: 95 SEMKQLTSLNIADNEIGVEGSKFISEMKHLTSLYIYYNEIGVEGAKFISEMKHLTSLNIS 154
Query: 285 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 331
IGDEG ++ + +L L + D ++G G + +SG+ L S+N+
Sbjct: 155 GNQIGDEGSKFISEMKSLTSLNIGDNEIGVEGAKFISGMKQLTSLNI 201
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 102/208 (49%), Gaps = 1/208 (0%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
+ +L SLNI N I K +S + +L SL I +++ G ++ ++ LT LN+
Sbjct: 1 MKQLTSLNI-GGNEIGVEGAKYMSEMKHLTSLDIHRNEIGVEGSKFISEMKHLTSLNIYY 59
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
+ +S + L LN+ ++ +G + S++ L LN+ NEI E +
Sbjct: 60 NEIGVEGSKYISEMKHLTSLNIGDNEIGVEGSKYISEMKQLTSLNIADNEIGVEGSKFIS 119
Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333
+ +L SL + IG EG ++ + +L L +S Q+G G + +S + +L S+N+
Sbjct: 120 EMKHLTSLYIYYNEIGVEGAKFISEMKHLTSLNISGNQIGDEGSKFISEMKSLTSLNIGD 179
Query: 334 TGISDGSLRKLAGLSSLKSLNLDARQIT 361
I + ++G+ L SLN+D ++
Sbjct: 180 NEIGVEGAKFISGMKQLTSLNIDDNELV 207
>gi|343423407|emb|CCD18182.1| hypothetical protein, conserved [Trypanosoma vivax Y486]
Length = 518
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 119/422 (28%), Positives = 174/422 (41%), Gaps = 62/422 (14%)
Query: 26 EAFRDCALQDLC----LGQYPGVNDKWMDVIASQG--SSLLSVDLSGSDVTDSGLIHLKD 79
E RDC + LC L + N + I G L + L VTD L L
Sbjct: 95 ENLRDCDVLPLCGMSSLEEVALHNASAIVHIGRFGRMPCLRVLTLHRVGVTDDFLCSLTT 154
Query: 80 CSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE 139
+L L+ C +++D +E L + L ++ + +G+ A L L +L+L+
Sbjct: 155 SGSLTHLNLTECSRLTD--VEPLASIKTLEQVNLS-GSFPGVRGLGALGSLPRLRELNLK 211
Query: 140 RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIA 198
L L L L + C +TD + PL +++L+ + +S CS +T G+
Sbjct: 212 HTAVTDDCLKTLSASKTLVRLFLGDCRRLTD--VTPLVKISSLQVVDLSDCSGIT-KGMG 268
Query: 199 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD--------------- 243
L L LL+L G +T L L A SL L++ RC+L D
Sbjct: 269 GFGTLPGLYLLSLTGTALTDEQLQELCASQSLESLSIKRCKLLTDVGVLGFVTTLRELDM 328
Query: 244 --------GCEKFSKIGSLKVLNLGFNEITDECLVHL--------------KGLTN---- 277
G FS + L+ L + F +T+ECL + K LT+
Sbjct: 329 SECDGVARGFCSFSALRELRSLYMTFTRVTNECLCEIAKCTQLVKLSVAGCKKLTDISCL 388
Query: 278 -----LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 332
LE LN++ C D+GL L GL L+ L +S T VG+ LR + LE L
Sbjct: 389 AQVHTLEDLNVNMCEHIDDGLGVLGGLEELRTLRMSSTAVGNDELRLVCKSKTLERSELE 448
Query: 333 -FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
I+D S LA SL LNLD Q TG+ L L L + L GA +T+
Sbjct: 449 GCERITDVS--ALAAAQSLMFLNLDKCQKVVTGVGELGKLPALRVISLQGATVTEDDMKS 506
Query: 392 LR 393
L+
Sbjct: 507 LK 508
>gi|430746594|ref|YP_007205723.1| hypothetical protein Sinac_5912 [Singulisphaera acidiphila DSM
18658]
gi|430018314|gb|AGA30028.1| hypothetical protein Sinac_5912 [Singulisphaera acidiphila DSM
18658]
Length = 170
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 89/170 (52%), Gaps = 8/170 (4%)
Query: 210 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
NL+GCP LSA+ L L + ++ D G + + + L+L +ITD L
Sbjct: 6 NLQGCPNANGI--RLSAV-VLKRLAIENTRVGDAGMAQLASHPGIAELDLHGTKITDAGL 62
Query: 270 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 329
LKG+ +L L+L + GI D GL +L G+ L+ L+L T++ +G+ HL GL L+ +
Sbjct: 63 KPLKGMKSLVHLSLRATGITDAGLAHLAGMDRLERLDLGYTKISDAGIEHLKGLKGLDIV 122
Query: 330 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
T ++D S+ + G L+++N +IT+ G L + L LD+
Sbjct: 123 E---TNVTDRSIPIIGGFERLEAINPRGSKITEAGEEQLRKM--LPKLDI 167
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 71/139 (51%), Gaps = 3/139 (2%)
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
LK L I ++V D+G+A L + L+L G +T A L L + SL +L+L ++
Sbjct: 23 LKRLAIENTRVGDAGMAQLASHPGIAELDLHGTKITDAGLKPLKGMKSLVHLSLRATGIT 82
Query: 242 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN 301
D G + + L+ L+LG+ +I+D + HLKG L+ L++ + D + + G
Sbjct: 83 DAGLAHLAGMDRLERLDLGYTKISDAGIEHLKG---LKGLDIVETNVTDRSIPIIGGFER 139
Query: 302 LKCLELSDTQVGSSGLRHL 320
L+ + +++ +G L
Sbjct: 140 LEAINPRGSKITEAGEEQL 158
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 61/109 (55%), Gaps = 3/109 (2%)
Query: 278 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 337
L+ L +++ +GD G+ L + L+L T++ +GL+ L G+ +L ++L TGI+
Sbjct: 23 LKRLAIENTRVGDAGMAQLASHPGIAELDLHGTKITDAGLKPLKGMKSLVHLSLRATGIT 82
Query: 338 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
D L LAG+ L+ L+L +I+D G+ L L G LD+ +TD
Sbjct: 83 DAGLAHLAGMDRLERLDLGYTKISDAGIEHLKGLKG---LDIVETNVTD 128
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 54/92 (58%)
Query: 302 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 361
LK L + +T+VG +G+ L+ + ++L T I+D L+ L G+ SL L+L A IT
Sbjct: 23 LKRLAIENTRVGDAGMAQLASHPGIAELDLHGTKITDAGLKPLKGMKSLVHLSLRATGIT 82
Query: 362 DTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
D GLA L + L LDL +I+D+G +L+
Sbjct: 83 DAGLAHLAGMDRLERLDLGYTKISDAGIEHLK 114
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 62/125 (49%), Gaps = 3/125 (2%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
+ D+ M L+ + L + +K+TD+G+ LKG++ L L+L +T A L L+ +
Sbjct: 33 VGDAGMAQLASHPGIAELDLHGTKITDAGLKPLKGMKSLVHLSLRATGITDAGLAHLAGM 92
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
L L+L ++SD G E LK L++ +TD + + G LE++N
Sbjct: 93 DRLERLDLGYTKISDAGIEHLK---GLKGLDIVETNVTDRSIPIIGGFERLEAINPRGSK 149
Query: 288 IGDEG 292
I + G
Sbjct: 150 ITEAG 154
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 71/160 (44%), Gaps = 14/160 (8%)
Query: 77 LKDCSNLQSLDFNFCI---------QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
L+ C N + + + ++ D G+ L + L IT G+K
Sbjct: 7 LQGCPNANGIRLSAVVLKRLAIENTRVGDAGMAQLASHPGIAELDLH-GTKITDAGLKPL 65
Query: 128 AGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
G+ +LV L L GL +L G+ +LE L++ + I+D+ ++ L G LK L I
Sbjct: 66 KGMKSLVHLSLRATGITDAGLAHLAGMDRLERLDLGYTK-ISDAGIEHLKG---LKGLDI 121
Query: 188 SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
+ VTD I + G ++L +N G +T A + L +
Sbjct: 122 VETNVTDRSIPIIGGFERLEAINPRGSKITEAGEEQLRKM 161
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 67/136 (49%), Gaps = 4/136 (2%)
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
N + GM A + +LDL GL LKG+ L L+++ ITD+ +
Sbjct: 30 NTRVGDAGMAQLASHPGIAELDLHGTKITDAGLKPLKGMKSLVHLSLR-ATGITDAGLAH 88
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
L+G+ L+ L + +K++D+GI +LKGL+ L ++ VT + + L +N
Sbjct: 89 LAGMDRLERLDLGYTKISDAGIEHLKGLKGLDIVETN---VTDRSIPIIGGFERLEAINP 145
Query: 236 NRCQLSDDGCEKFSKI 251
++++ G E+ K+
Sbjct: 146 RGSKITEAGEEQLRKM 161
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 14/82 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGL-------SNLT 109
SL+ + L + +TD+GL HL L+ LD + +ISD G+EHL+GL +N+T
Sbjct: 69 KSLVHLSLRATGITDAGLAHLAGMDRLERLDLGYT-KISDAGIEHLKGLKGLDIVETNVT 127
Query: 110 SLS------FRRNNAITAQGMK 125
S F R AI +G K
Sbjct: 128 DRSIPIIGGFERLEAINPRGSK 149
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 71/158 (44%), Gaps = 31/158 (19%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR 103
V D M +AS + +DL G+ +TD+ GL+ L+
Sbjct: 33 VGDAGMAQLASH-PGIAELDLHGTKITDA-------------------------GLKPLK 66
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 163
G+ +L LS R IT G+ AG+ L +LDL G+ +LKG L+ L+I
Sbjct: 67 GMKSLVHLSL-RATGITDAGLAHLAGMDRLERLDLGYTKISDAGIEHLKG---LKGLDIV 122
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLK 201
N +TD + + G L+++ SK+T++G L+
Sbjct: 123 ETN-VTDRSIPIIGGFERLEAINPRGSKITEAGEEQLR 159
>gi|158429246|pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 94/297 (31%), Positives = 142/297 (47%), Gaps = 47/297 (15%)
Query: 92 IQISDGGLEHLRGLSNLTSLS--FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLV 149
I S+ L + L NLT L NN I + A L NL L L + +
Sbjct: 68 INFSNNQLTDITPLKNLTKLVDILMNNNQIA--DITPLANLTNLTGLTL-----FNNQIT 120
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL 209
++ L L +LN + T SD+ LSGLT+L+ L S ++VTD LK L LT
Sbjct: 121 DIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTD-----LKPLANLT-- 173
Query: 210 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
LE +++ + +S L K + + SL N N+I+D +
Sbjct: 174 TLERLDISSNKVSDISVLA------------------KLTNLESLIATN---NQISD--I 210
Query: 270 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 329
L LTNL+ L+L+ + D G L L NL L+L++ Q+ S L LSGLT L +
Sbjct: 211 TPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPLSGLTKLTEL 266
Query: 330 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+ I+D
Sbjct: 267 KLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISD 319
>gi|255524523|ref|ZP_05391478.1| leucine-rich repeat protein [Clostridium carboxidivorans P7]
gi|296186022|ref|ZP_06854427.1| leucine Rich repeat protein [Clostridium carboxidivorans P7]
gi|255511819|gb|EET88104.1| leucine-rich repeat protein [Clostridium carboxidivorans P7]
gi|296049290|gb|EFG88719.1| leucine Rich repeat protein [Clostridium carboxidivorans P7]
Length = 683
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 89/289 (30%), Positives = 144/289 (49%), Gaps = 43/289 (14%)
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
Q + L NL LDL + ++I + LK L KL++L N SD+ PL LT+
Sbjct: 371 QDISGIENLTNLQFLDLSQ-SKI-SDISELKNLTKLQTL---LLNDNEISDISPLQNLTD 425
Query: 182 LKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
LK L + ++++D + + YL L +L L N ++ L L +L L L++ Q+
Sbjct: 426 LKQLDLEENRISDITPLQYLSDLNELYLKNNRITNISK-----LEWLTNLKILYLSQNQI 480
Query: 241 SD-DGCEKFSKIGSLKVLNL-------GFNEITDECL--------------VHLKGLTNL 278
SD +++ + K N+ DE L +++ + N+
Sbjct: 481 SDYSPVKRYYDNLTDKDFNMTNSTDSKDIVTFKDENLEKAVRDKINKETGDIYITDVKNI 540
Query: 279 ESLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 337
SLN I D G+ NLT L + L+L + QV S + LS LTNLE++NLS+ S
Sbjct: 541 VSLNASHKNIKDISGIENLTSL---QTLDLGNNQV--SDISVLSSLTNLETLNLSYNEFS 595
Query: 338 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
D + KL GLS L++LNL++ +I D ++A+ +L L L+L +I++
Sbjct: 596 D--ISKLKGLSKLETLNLNSNEIGD--ISAIQTLNNLKSLNLSNCKISN 640
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 72/153 (47%), Gaps = 33/153 (21%)
Query: 71 DSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR--NNAITAQGMKAFA 128
++G I++ D N+ SL+ S ++ + G+ NLTSL NN ++ + +
Sbjct: 528 ETGDIYITDVKNIVSLN------ASHKNIKDISGIENLTSLQTLDLGNNQVS--DISVLS 579
Query: 129 GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD------------------ 170
L NL L+L + LKGL KLE+LN+ N I D
Sbjct: 580 SLTNLETLNLSYNE--FSDISKLKGLSKLETLNLN-SNEIGDISAIQTLNNLKSLNLSNC 636
Query: 171 --SDMKPLSGLTNLKSLQISCSKVTDSGIAYLK 201
S++ PL GL NLK+L ++ ++++DS LK
Sbjct: 637 KISNINPLKGLNNLKTLWLNNNEMSDSDKEALK 669
Score = 38.5 bits (88), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 67/250 (26%), Positives = 114/250 (45%), Gaps = 59/250 (23%)
Query: 171 SDMKPLSG----------------------LTNLKSLQISCSKVTDSGIAYLKGLQKLTL 208
SD+ L G T +++L ++ +++TD + LQK L
Sbjct: 214 SDINELRGLNNLYSLNLNNNEISDINELKYFTYMRTLLLNNNEITD-----ISPLQK--L 266
Query: 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL--KVLNLGFNEI-- 264
+NL+ + +++++AL L NLN L + +S S K+LN F+ I
Sbjct: 267 INLQQLSLKNNRINNINALRGL--TNLNLLYLGQNEILDYSPTRSYYAKILNKDFDLIDS 324
Query: 265 TDECLVHLKGLTNLE-----SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 319
D+ +V K + NLE +N S I + + L Q ++
Sbjct: 325 NDDNIVTFKDI-NLEKAVRSEINKPSGDIYKSDVEKIVSL-----------QPYHENIQD 372
Query: 320 LSG---LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 376
+SG LTNL+ ++LS + ISD + +L L+ L++L L+ +I+D ++ L +LT L
Sbjct: 373 ISGIENLTNLQFLDLSQSKISD--ISELKNLTKLQTLLLNDNEISD--ISPLQNLTDLKQ 428
Query: 377 LDLFGARITD 386
LDL RI+D
Sbjct: 429 LDLEENRISD 438
>gi|158429242|pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 94/297 (31%), Positives = 142/297 (47%), Gaps = 47/297 (15%)
Query: 92 IQISDGGLEHLRGLSNLTSLS--FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLV 149
I S+ L + L NLT L NN I + A L NL L L + +
Sbjct: 68 INFSNNQLTDITPLKNLTKLVDILMNNNQIA--DITPLANLTNLTGLTL-----FNNQIT 120
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL 209
++ L L +LN + T SD+ LSGLT+L+ L S ++VTD LK L LT
Sbjct: 121 DIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTD-----LKPLANLT-- 173
Query: 210 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
LE +++ + +S L K + + SL N N+I+D +
Sbjct: 174 TLERLDISSNKVSDISVLA------------------KLTNLESLIATN---NQISD--I 210
Query: 270 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 329
L LTNL+ L+L+ + D G L L NL L+L++ Q+ S L LSGLT L +
Sbjct: 211 TPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPLSGLTKLTEL 266
Query: 330 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+ I+D
Sbjct: 267 KLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISD 319
>gi|290972775|ref|XP_002669126.1| predicted protein [Naegleria gruberi]
gi|284082669|gb|EFC36382.1| predicted protein [Naegleria gruberi]
Length = 467
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 97/390 (24%), Positives = 179/390 (45%), Gaps = 42/390 (10%)
Query: 40 QYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGL 99
++ +N+ M+ IAS + L+S+D+ + G+ L N L+ F +
Sbjct: 72 KFNNINEYEMESIASM-NKLISLDIGCARTNLEGIKILSSKDNFTELNIEFSFFDQVPYM 130
Query: 100 EHLRGLSNLTSLSFRRN-----NAITAQGMKAFAGLINL----VKLDLE----------- 139
E++ +++L L N A +A +K+ L +L + +DLE
Sbjct: 131 EYVSKMTDLRKLDISNNPISLNRAKSANYLKSLEKLTDLTVTYLDMDLEFLKSISNLKFL 190
Query: 140 RCTRIHGGLVNLKG------LMKLESLNIKWCNCITDSDMKPLSG-LTNLKSLQISCSKV 192
I+G LV ++G + +L+ L+I N I + K +S L L +L+I +++
Sbjct: 191 TSLSIYGNLVGIEGVKIICSMFQLKKLDIT-LNAIGEEGAKLISNSLKQLNTLRIGDNQI 249
Query: 193 TDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL--FYLNLNRC---QLSDDGCEK 247
D G + ++ LT L+LE + L+ + + L LN N +L +
Sbjct: 250 GDKGAESISSMKTLTALDLEESNIGPQGLEFICQMDQLKSLMLNFNTIGGSRLPINALTN 309
Query: 248 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL-TGLCNLKCLE 306
++I SL + N+G E + + +T L ++N+ +GDE L + L NL L+
Sbjct: 310 LTEI-SLVLTNIGI-----EIVKSISLITKLRNVNISDNRLGDECLEIIGNSLFNLTELD 363
Query: 307 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 366
+S+ + +G ++LS L NL +N ++D S++ L L LKSL ++ Q+ D G A
Sbjct: 364 ISENNMTENGTKYLSSLKNLTHLNAEDNRLNDESIQHLCSLKKLKSLYINNNQVGDEGFA 423
Query: 367 ALT-SLTGLTHLDLFGARITDSGAAYLRSK 395
+ S+ L + + T+ G L+S+
Sbjct: 424 LIANSMKQLRLVHAHNNKETEIGRTLLKSR 453
>gi|421898414|ref|ZP_16328780.1| lrr-gala family type III effector protein (gala 2) [Ralstonia
solanacearum MolK2]
gi|206589620|emb|CAQ36581.1| lrr-gala family type III effector protein (gala 2) [Ralstonia
solanacearum MolK2]
Length = 1051
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 97/349 (27%), Positives = 154/349 (44%), Gaps = 4/349 (1%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR 103
+ D+ + +AS +SL S++LSG+ + ++G L + L +L+ + I D G++ L
Sbjct: 685 IGDREVQALASS-TSLTSLNLSGNRIGNAGARALGRNTVLTALNVS-ANPIGDAGVQALA 742
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 163
+LTSL R I G+ A A L LD+ L L SL
Sbjct: 743 DSQSLTSLELR-GIGIGEAGIAALASNTVLRSLDISSNDLSEQSAAELARNQTLASLKAN 801
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
C +T+ + L+ + +L++L++ + + D+G+ + L LNL P+T L
Sbjct: 802 ACG-LTNGMAQQLARIRSLRTLEVGSNSIGDTGVLAIARNASLRTLNLSHNPITLQGLRP 860
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
L +L L+++ D G SK +L L LGFN I L L SL+L
Sbjct: 861 LELSRTLTSLDVSGIGCGDRGALLLSKNRALTSLKLGFNGIGSAGAQGLAANRTLISLDL 920
Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
I + L L L +SD ++ L+ L S+++S +S + R
Sbjct: 921 RGNTIDVDAAKALANTGCLTSLNVSDCKLDDEAASALAESLTLTSLDVSVNRLSGQAARA 980
Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
LAG ++L SLN+ I G AL LT LD I ++GA L
Sbjct: 981 LAGNATLTSLNISHNHIGPDGAQALAESPSLTFLDARANGIGEAGARAL 1029
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 98/339 (28%), Positives = 156/339 (46%), Gaps = 7/339 (2%)
Query: 57 SSLLSVDLSG---SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ +DLSG S V+++GL L L+SLD + +I D ++ L ++LTSL+
Sbjct: 647 PSVRHLDLSGCTGSAVSEAGLAVLARLP-LESLDLS-GTRIGDREVQALASSTSLTSLNL 704
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
N I G +A L L++ G+ L L SL ++ I ++ +
Sbjct: 705 S-GNRIGNAGARALGRNTVLTALNVSANPIGDAGVQALADSQSLTSLELRGIG-IGEAGI 762
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
L+ T L+SL IS + +++ A L Q L L C +T L+ + SL L
Sbjct: 763 AALASNTVLRSLDISSNDLSEQSAAELARNQTLASLKANACGLTNGMAQQLARIRSLRTL 822
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+ + D G ++ SL+ LNL N IT + L L+ L SL++ G GD G
Sbjct: 823 EVGSNSIGDTGVLAIARNASLRTLNLSHNPITLQGLRPLELSRTLTSLDVSGIGCGDRGA 882
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
+ L+ L L+L +GS+G + L+ L S++L I + + LA L SL
Sbjct: 883 LLLSKNRALTSLKLGFNGIGSAGAQGLAANRTLISLDLRGNTIDVDAAKALANTGCLTSL 942
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
N+ ++ D +AL LT LD+ R++ A L
Sbjct: 943 NVSDCKLDDEAASALAESLTLTSLDVSVNRLSGQAARAL 981
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 74/291 (25%), Positives = 131/291 (45%), Gaps = 16/291 (5%)
Query: 43 GVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
G+ + + +AS + L S+D+S +D+++ L L SL N C +++G + L
Sbjct: 756 GIGEAGIAALASN-TVLRSLDISSNDLSEQSAAELARNQTLASLKANAC-GLTNGMAQQL 813
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE---- 158
+ +L +L +N+I G+ A A +L L+L + L+GL LE
Sbjct: 814 ARIRSLRTLEVG-SNSIGDTGVLAIARNASLRTLNLSHNP------ITLQGLRPLELSRT 866
Query: 159 --SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
SL++ C D LS L SL++ + + +G L + L L+L G +
Sbjct: 867 LTSLDVSGIGC-GDRGALLLSKNRALTSLKLGFNGIGSAGAQGLAANRTLISLDLRGNTI 925
Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 276
+L+ G L LN++ C+L D+ ++ +L L++ N ++ + L G
Sbjct: 926 DVDAAKALANTGCLTSLNVSDCKLDDEAASALAESLTLTSLDVSVNRLSGQAARALAGNA 985
Query: 277 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 327
L SLN+ IG +G L +L L+ +G +G R L T ++
Sbjct: 986 TLTSLNISHNHIGPDGAQALAESPSLTFLDARANGIGEAGARALENNTRMQ 1036
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 64/122 (52%), Gaps = 4/122 (3%)
Query: 276 TNLESLNLDSC---GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 332
++ L+L C + + GL L L L+ L+LS T++G ++ L+ T+L S+NLS
Sbjct: 647 PSVRHLDLSGCTGSAVSEAGLAVLARLP-LESLDLSGTRIGDREVQALASSTSLTSLNLS 705
Query: 333 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
I + R L + L +LN+ A I D G+ AL LT L+L G I ++G A L
Sbjct: 706 GNRIGNAGARALGRNTVLTALNVSANPIGDAGVQALADSQSLTSLELRGIGIGEAGIAAL 765
Query: 393 RS 394
S
Sbjct: 766 AS 767
Score = 44.7 bits (104), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 67/122 (54%), Gaps = 2/122 (1%)
Query: 267 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 326
E + +L GL LESLN+ IGD+G L +L+ L ++ +G++G R L+ L
Sbjct: 145 EAIAYLAGLP-LESLNVAGADIGDDGARLLAANPSLRALNAANGGIGAAGARALAESPVL 203
Query: 327 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
S++L+ GI D R LAG SL SL + +TD G AL LT LDL G IT+
Sbjct: 204 ASLDLTRNGIGDEGARALAGSRSLTSLAVLNCLVTDVGARALAGNGTLTALDL-GNLITE 262
Query: 387 SG 388
+G
Sbjct: 263 TG 264
Score = 37.7 bits (86), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 85/205 (41%), Gaps = 13/205 (6%)
Query: 180 TNLKSLQISCSKVTDSGIAYLKGLQK-LTLLNLEGCPVTAACLDSLSALG--SLFYLNLN 236
NL SLQ+ + + LK L L L+L C A ++++ L L LN+
Sbjct: 106 PNLTSLQLEGNFT----LQDLKALPATLRHLDLSACTGGAKSFEAIAYLAGLPLESLNVA 161
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
+ DDG + SL+ LN I L L SL+L GIGDEG L
Sbjct: 162 GADIGDDGARLLAANPSLRALNAANGGIGAAGARALAESPVLASLDLTRNGIGDEGARAL 221
Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
G +L L + + V G R L+G L +++L G+ + AG +
Sbjct: 222 AGSRSLTSLAVLNCLVTDVGARALAGNGTLTALDLGNLITETGNELEQAG------YDRT 275
Query: 357 ARQITDTGLAALTSLTGLTHLDLFG 381
A +IT G AL LT L + G
Sbjct: 276 ANEITARGAWALAQNRSLTSLSIQG 300
>gi|222617264|gb|EEE53396.1| hypothetical protein OsJ_36445 [Oryza sativa Japonica Group]
Length = 625
Score = 74.3 bits (181), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 113/407 (27%), Positives = 194/407 (47%), Gaps = 46/407 (11%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGS-DVTDSGLIHLKDCSNLQSLDFNFC 91
++ +CL + GV + +D + + L +VDLS D L + L+ L C
Sbjct: 73 VRRVCLARASGVGWRGLDALVAACPRLEAVDLSHCVGAGDREAAALAAATGLRELSLEKC 132
Query: 92 IQISDGGLEH-LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-LVKLDLERCTRIHGGLV 149
+ ++D GL + G L LS + I+ G+ + + L LD+ + L
Sbjct: 133 LGVTDMGLAKVVVGCPRLEKLSLKWCREISDIGIDLLSKKCHELRSLDISYLKVGNESLR 192
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPL-SGLTNLKSLQIS-CSKVTDSGIA--------- 198
++ L KLE L + C+CI D ++ L G +L+S+ +S C VT G+A
Sbjct: 193 SISSLEKLEELAMVCCSCIDDDGLELLGKGSNSLQSVDVSRCDHVTSQGLASLIDGHNFL 252
Query: 199 ---------------YLKGLQK----LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 239
+L L K LT+L L+G V+++ L ++ +L + L++C
Sbjct: 253 QKLNAADSLHEMRQSFLSNLAKLKDTLTVLRLDGLEVSSSVLLAIGGCNNLVEIGLSKCN 312
Query: 240 -LSDDGCEKF-SKIGSLKVLNLG-FNEITDECLVHL-KGLTNLESLNLDSC-GIGDEGLV 294
++D+G ++ L+V++L N +T+ L + + +E L L+SC I ++GL
Sbjct: 313 GVTDEGISSLVTQCSHLRVIDLTCCNLLTNNALDSIAENCKMVEHLRLESCSSISEKGLE 372
Query: 295 NLTGLC-NLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKS 352
+ C NLK ++L+D V + L+HL+ + L + L + ISD L ++ S K
Sbjct: 373 QIATSCPNLKEIDLTDCGVNDAALQHLAKCSELLVLKLGLCSSISDKGLAFISS-SCGKL 431
Query: 353 LNLDARQ---ITDTGLAALTS-LTGLTHLDL-FGARITDSGAAYLRS 394
+ LD + ITD GLAAL + + L+L + +ITDSG +L S
Sbjct: 432 IELDLYRCNSITDDGLAALANGCKKIKMLNLCYCNKITDSGLGHLGS 478
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 96/203 (47%), Gaps = 28/203 (13%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL- 102
+++K ++ IA+ +L +DL+ V D+ L HL CS L L C ISD GL +
Sbjct: 366 ISEKGLEQIATSCPNLKEIDLTDCGVNDAALQHLAKCSELLVLKLGLCSSISDKGLAFIS 425
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
L L R N+IT G+ A A G K++ LN+
Sbjct: 426 SSCGKLIELDLYRCNSITDDGLAALA-----------------------NGCKKIKMLNL 462
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISC-SKVTDSGIAYLK-GLQKLTLLNLEGC-PVTAA 219
+CN ITDS + L L L +L++ C ++T GI+ + G + L ++L+ C V A
Sbjct: 463 CYCNKITDSGLGHLGSLEELTNLELRCLVRITGIGISSVAIGCKNLIEIDLKRCYSVDDA 522
Query: 220 CLDSLSALG-SLFYLNLNRCQLS 241
L +L+ +L L ++ CQ++
Sbjct: 523 GLWALARYALNLRQLTISYCQVT 545
>gi|46445832|ref|YP_007197.1| F-box protein [Candidatus Protochlamydia amoebophila UWE25]
gi|46399473|emb|CAF22922.1| putative F-box protein [Candidatus Protochlamydia amoebophila
UWE25]
Length = 329
Score = 74.3 bits (181), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 75/133 (56%), Gaps = 2/133 (1%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TD+ L+ LK+C NL+ L C ++D GL HL L L L+ + +T G+
Sbjct: 197 LTDAHLLTLKNCKNLKVLQLQACRNLTDVGLAHLAPLEALKHLNLSECDNLTDAGLAHLT 256
Query: 129 GLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
LI L LDL+ C ++ GL L+ L+ L+ LN+K C+ +TD + L L L+ L +
Sbjct: 257 LLIALQYLDLKGCAKLTDAGLARLRPLVALQHLNLKGCDNLTDIGLAHLRPLVALQHLDL 316
Query: 188 S-CSKVTDSGIAY 199
C+ +TD+G+A+
Sbjct: 317 DGCNNLTDAGLAH 329
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 84/145 (57%), Gaps = 5/145 (3%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGC 214
++E+++ +TD+ + L NLK LQ+ +C +TD G+A+L L+ L LNL C
Sbjct: 185 EIEAIHFSDNVYLTDAHLLTLKNCKNLKVLQLQACRNLTDVGLAHLAPLEALKHLNLSEC 244
Query: 215 P-VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVH 271
+T A L L+ L +L YL+L C +L+D G + + +L+ LNL G + +TD L H
Sbjct: 245 DNLTDAGLAHLTLLIALQYLDLKGCAKLTDAGLARLRPLVALQHLNLKGCDNLTDIGLAH 304
Query: 272 LKGLTNLESLNLDSC-GIGDEGLVN 295
L+ L L+ L+LD C + D GL +
Sbjct: 305 LRPLVALQHLDLDGCNNLTDAGLAH 329
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 58/153 (37%), Positives = 80/153 (52%), Gaps = 16/153 (10%)
Query: 255 KVLNLGFNEI-----------TDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNL 302
K+LN NEI TD L+ LK NL+ L L +C + D GL +L L L
Sbjct: 177 KILNHFSNEIEAIHFSDNVYLTDAHLLTLKNCKNLKVLQLQACRNLTDVGLAHLAPLEAL 236
Query: 303 KCLELSD-TQVGSSGLRHLSGLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNLDA-RQ 359
K L LS+ + +GL HL+ L L+ ++L ++D L +L L +L+ LNL
Sbjct: 237 KHLNLSECDNLTDAGLAHLTLLIALQYLDLKGCAKLTDAGLARLRPLVALQHLNLKGCDN 296
Query: 360 ITDTGLAALTSLTGLTHLDLFGA-RITDSGAAY 391
+TD GLA L L L HLDL G +TD+G A+
Sbjct: 297 LTDIGLAHLRPLVALQHLDLDGCNNLTDAGLAH 329
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 79/148 (53%), Gaps = 5/148 (3%)
Query: 102 LRGLSN-LTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLES 159
L SN + ++ F N +T + NL L L+ C + GL +L L L+
Sbjct: 179 LNHFSNEIEAIHFSDNVYLTDAHLLTLKNCKNLKVLQLQACRNLTDVGLAHLAPLEALKH 238
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VT 217
LN+ C+ +TD+ + L+ L L+ L + C+K+TD+G+A L+ L L LNL+GC +T
Sbjct: 239 LNLSECDNLTDAGLAHLTLLIALQYLDLKGCAKLTDAGLARLRPLVALQHLNLKGCDNLT 298
Query: 218 AACLDSLSALGSLFYLNLNRC-QLSDDG 244
L L L +L +L+L+ C L+D G
Sbjct: 299 DIGLAHLRPLVALQHLDLDGCNNLTDAG 326
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 57 SSLLSVDLSGSD-VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
+L ++LS D +TD+GL HL LQ LD C +++D GL LR L L L+ +
Sbjct: 234 EALKHLNLSECDNLTDAGLAHLTLLIALQYLDLKGCAKLTDAGLARLRPLVALQHLNLKG 293
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRI 144
+ +T G+ L+ L LDL+ C +
Sbjct: 294 CDNLTDIGLAHLRPLVALQHLDLDGCNNL 322
>gi|290993104|ref|XP_002679173.1| LRR_RI domain-containing protein [Naegleria gruberi]
gi|284092789|gb|EFC46429.1| LRR_RI domain-containing protein [Naegleria gruberi]
Length = 370
Score = 74.3 bits (181), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 109/222 (49%)
Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
+D + +S + +L L ++ ++++D G+ ++ + LT L ++ V S+ + L
Sbjct: 109 NDAQVISEMKSLTKLDLNGNRISDEGVDFISKMSGLTYLRIDSNAVHDEGAKSIQGMKGL 168
Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
L ++ + G E S++G+L L++ N + E + + NL SL +D IG
Sbjct: 169 RTLKVSNNSFFEVGFEAISQMGNLTKLDMSENSLGIEGTKSIGIMKNLTSLKIDYNHIGS 228
Query: 291 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 350
EG+ L + L L + + Q+ G +++ L L +++SF + + + ++ L+ L
Sbjct: 229 EGVKYLNEMKQLTKLSIVENQIDEEGAKYIGELKQLTILDISFNYVGEKGAKSISTLNKL 288
Query: 351 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
L++ I + G +L++L LT LD+ I GA L
Sbjct: 289 TMLDIIENNIGENGAISLSNLNQLTKLDINSNNIGHLGAKSL 330
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 103/221 (46%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
N I+D + +S ++ L L+I + V D G ++G++ L L + +++S
Sbjct: 128 NRISDEGVDFISKMSGLTYLRIDSNAVHDEGAKSIQGMKGLRTLKVSNNSFFEVGFEAIS 187
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
+G+L L+++ L +G + + +L L + +N I E + +L + L L++
Sbjct: 188 QMGNLTKLDMSENSLGIEGTKSIGIMKNLTSLKIDYNHIGSEGVKYLNEMKQLTKLSIVE 247
Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 345
I +EG + L L L++S VG G + +S L L +++ I + L+
Sbjct: 248 NQIDEEGAKYIGELKQLTILDISFNYVGEKGAKSISTLNKLTMLDIIENNIGENGAISLS 307
Query: 346 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
L+ L L++++ I G +L L L L++ I D
Sbjct: 308 NLNQLTKLDINSNNIGHLGAKSLVKLNQLKELNISYNNIND 348
>gi|290975580|ref|XP_002670520.1| predicted protein [Naegleria gruberi]
gi|284084080|gb|EFC37776.1| predicted protein [Naegleria gruberi]
Length = 265
Score = 74.3 bits (181), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 65/246 (26%), Positives = 119/246 (48%), Gaps = 6/246 (2%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
+I DGG + GL NL +L N+ + G K+ + L L LD+ G+ ++
Sbjct: 13 RIGDGGAMLIGGLKNLITLQIYENH-LGPNGAKSISELKQLTILDISHNRIRDEGVKSIS 71
Query: 153 GLM-KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
M +L +L+I + I++ + PL + NLK L +++ + ++++T L++
Sbjct: 72 EKMDQLTNLDISFVG-ISEKGLVPLVEMKNLKILAFYDCQLSTKQAETISKMKQITELDI 130
Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 271
L S+ + L L L + ++ E S++ L VLN+ NEI +E +V+
Sbjct: 131 SYNLTNNEILKSIGEMKQLIKLYLVKNGITSHQVEIISQLKQLTVLNISENEIRNEGVVY 190
Query: 272 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 331
+ GL L L++ + GIG EG++++ + L L + + + LR L G+ +
Sbjct: 191 ISGLKQLTELDISNNGIGYEGVLSICKMTQLTKLSIYNNPIPEEALRILDGMKQFRQL-- 248
Query: 332 SFTGIS 337
TGIS
Sbjct: 249 -VTGIS 253
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/233 (25%), Positives = 107/233 (45%), Gaps = 26/233 (11%)
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL-KGLQ 204
GG + + GL L +L I + N + + K +S L L L IS +++ D G+ + + +
Sbjct: 17 GGAMLIGGLKNLITLQI-YENHLGPNGAKSISELKQLTILDISHNRIRDEGVKSISEKMD 75
Query: 205 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 264
+LT L++ ++ L L + +L L CQLS E SK+ + L++ +N
Sbjct: 76 QLTNLDISFVGISEKGLVPLVEMKNLKILAFYDCQLSTKQAETISKMKQITELDISYNLT 135
Query: 265 TDECLVHL-------------KGLT-----------NLESLNLDSCGIGDEGLVNLTGLC 300
+E L + G+T L LN+ I +EG+V ++GL
Sbjct: 136 NNEILKSIGEMKQLIKLYLVKNGITSHQVEIISQLKQLTVLNISENEIRNEGVVYISGLK 195
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
L L++S+ +G G+ + +T L +++ I + +LR L G+ + L
Sbjct: 196 QLTELDISNNGIGYEGVLSICKMTQLTKLSIYNNPIPEEALRILDGMKQFRQL 248
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 82/170 (48%), Gaps = 1/170 (0%)
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL-KGLTNLESLN 282
+ L +L L + L +G + S++ L +L++ N I DE + + + + L +L+
Sbjct: 22 IGGLKNLITLQIYENHLGPNGAKSISELKQLTILDISHNRIRDEGVKSISEKMDQLTNLD 81
Query: 283 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 342
+ GI ++GLV L + NLK L D Q+ + +S + + +++S+ ++ L+
Sbjct: 82 ISFVGISEKGLVPLVEMKNLKILAFYDCQLSTKQAETISKMKQITELDISYNLTNNEILK 141
Query: 343 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
+ + L L L IT + ++ L LT L++ I + G Y+
Sbjct: 142 SIGEMKQLIKLYLVKNGITSHQVEIISQLKQLTVLNISENEIRNEGVVYI 191
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 102/214 (47%), Gaps = 6/214 (2%)
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
+ L +L IS +++ D G + GL+ L L + + S+S L L L+++
Sbjct: 1 MKQLTALDISSNRIGDGGAMLIGGLKNLITLQIYENHLGPNGAKSISELKQLTILDISHN 60
Query: 239 QLSDDGCEKFS-KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
++ D+G + S K+ L L++ F I+++ LV L + NL+ L C + + ++
Sbjct: 61 RIRDEGVKSISEKMDQLTNLDISFVGISEKGLVPLVEMKNLKILAFYDCQLSTKQAETIS 120
Query: 298 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 357
+ + L++S + L+ + + L + L GI+ + ++ L L LN+
Sbjct: 121 KMKQITELDISYNLTNNEILKSIGEMKQLIKLYLVKNGITSHQVEIISQLKQLTVLNISE 180
Query: 358 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
+I + G+ ++ L LT LD I+++G Y
Sbjct: 181 NEIRNEGVVYISGLKQLTELD-----ISNNGIGY 209
Score = 45.1 bits (105), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 46/214 (21%), Positives = 95/214 (44%), Gaps = 33/214 (15%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR 103
+ D+ + I+ + L ++D+S +++ GL+ L + NL+ L F C Q+S E +
Sbjct: 62 IRDEGVKSISEKMDQLTNLDISFVGISEKGLVPLVEMKNLKILAFYDC-QLSTKQAETIS 120
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 163
+ +T L N + +K+ + L+KL L +
Sbjct: 121 KMKQITELDISY-NLTNNEILKSIGEMKQLIKLYLVK----------------------- 156
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
N IT ++ +S L L L IS +++ + G+ Y+ GL++LT L++ + + S
Sbjct: 157 --NGITSHQVEIISQLKQLTVLNISENEIRNEGVVYISGLKQLTELDISNNGIGYEGVLS 214
Query: 224 LSALGSLFYLNLNRCQLSD------DGCEKFSKI 251
+ + L L++ + + DG ++F ++
Sbjct: 215 ICKMTQLTKLSIYNNPIPEEALRILDGMKQFRQL 248
>gi|345480032|ref|XP_003424075.1| PREDICTED: F-box/LRR-repeat protein 14-like [Nasonia vitripennis]
Length = 567
Score = 74.3 bits (181), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 94/320 (29%), Positives = 156/320 (48%), Gaps = 56/320 (17%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
+ L SL+ + C +SD G+ N+A++ + F+ +L +L
Sbjct: 260 FRGIPKLHSLNLSGCFNMSDAGI----------------NSALS----QPFS---SLTQL 296
Query: 137 DLERCTRIHGGLVN--LKGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKSLQI-SCSKV 192
+L C I + + L LE+L++ C IT+S + ++ GL +L+ L + SC V
Sbjct: 297 NLSYCKHITDASLGKIAQCLKNLETLDLGGCTNITNSGLHVIAWGLKSLRRLDVKSCWHV 356
Query: 193 TDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKI 251
+D GI YL G+ NL +L +L L Q L+D+G S +
Sbjct: 357 SDQGIGYLAGINSDAGGNL-----------------ALEHLGLQDVQRLTDEGLRSIS-L 398
Query: 252 G---SLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT-GLCNLKCLE 306
G SL+ +NL F +ITD + H+ +T+L L+L +C I + + NL G + L+
Sbjct: 399 GLATSLQSINLSFCVQITDNGMKHIAKITSLRELDLRNCDISESAMANLAEGGSRISSLD 458
Query: 307 LSD-TQVGSSGLRHLS-GLTNLESINLSFTGISDGSLRKLAGLSS-LKSLNL-DARQITD 362
+S +VG L+H+S GL NL+S+ LS ISD + K+A L++L + ++TD
Sbjct: 459 VSFCDKVGDQALQHISQGLFNLKSLGLSACPISDEGIDKIAKTQQDLETLLIGQCSRLTD 518
Query: 363 TG-LAALTSLTGLTHLDLFG 381
L + S+ L +DL+G
Sbjct: 519 KSILTIVESMPRLRSIDLYG 538
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 91/315 (28%), Positives = 152/315 (48%), Gaps = 61/315 (19%)
Query: 57 SSLLSVDLSG-SDVTDSGLIHLKDC-SNLQSLDFNFCIQISDGGLEHLR-GLSNLTSLSF 113
SSL ++LS +TD+ L + C NL++LD C I++ GL + GL +L L
Sbjct: 291 SSLTQLNLSYCKHITDASLGKIAQCLKNLETLDLGGCTNITNSGLHVIAWGLKSLRRLDV 350
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
+ ++ QG+ AG+ + + G + LE L ++ +TD +
Sbjct: 351 KSCWHVSDQGIGYLAGINS-----------------DAGGNLALEHLGLQDVQRLTDEGL 393
Query: 174 KPLS-GL-TNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
+ +S GL T+L+S+ +S C ++TD+G+ ++ + L L+L C ++ + + +L+ G
Sbjct: 394 RSISLGLATSLQSINLSFCVQITDNGMKHIAKITSLRELDLRNCDISESAMANLAEGG-- 451
Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHL-KGLTNLESLNLDSCGI 288
S+I SL V F +++ D+ L H+ +GL NL+SL L +C I
Sbjct: 452 ------------------SRISSLDV---SFCDKVGDQALQHISQGLFNLKSLGLSACPI 490
Query: 289 GDEGL-------VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL-SFTGISDGS 340
DEG+ +L L +C L+D + L + + L SI+L T IS S
Sbjct: 491 SDEGIDKIAKTQQDLETLLIGQCSRLTDKSI----LTIVESMPRLRSIDLYGCTKISKFS 546
Query: 341 LRKLAGLSSLKSLNL 355
L K+ L L SLNL
Sbjct: 547 LEKILKL-PLISLNL 560
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 69/211 (32%), Positives = 104/211 (49%), Gaps = 41/211 (19%)
Query: 200 LKGLQKLTLLNLEGC-PVTAACLDSL--SALGSLFYLNLNRCQ-LSDDGCEKFSK-IGSL 254
+G+ KL LNL GC ++ A ++S SL LNL+ C+ ++D K ++ + +L
Sbjct: 260 FRGIPKLHSLNLSGCFNMSDAGINSALSQPFSSLTQLNLSYCKHITDASLGKIAQCLKNL 319
Query: 255 KVLNLG-FNEITDECL-VHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCN-------LKC 304
+ L+LG IT+ L V GL +L L++ SC + D+G+ L G+ + L+
Sbjct: 320 ETLDLGGCTNITNSGLHVIAWGLKSLRRLDVKSCWHVSDQGIGYLAGINSDAGGNLALEH 379
Query: 305 LELSDTQ-VGSSGLRHLS-GL-TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 361
L L D Q + GLR +S GL T+L+SINLSF QIT
Sbjct: 380 LGLQDVQRLTDEGLRSISLGLATSLQSINLSF-----------------------CVQIT 416
Query: 362 DTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
D G+ + +T L LDL I++S A L
Sbjct: 417 DNGMKHIAKITSLRELDLRNCDISESAMANL 447
>gi|290975915|ref|XP_002670687.1| predicted protein [Naegleria gruberi]
gi|284084248|gb|EFC37943.1| predicted protein [Naegleria gruberi]
Length = 402
Score = 74.3 bits (181), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 98/212 (46%), Gaps = 1/212 (0%)
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
L +L IS + + + G ++ L++LTLLN+ + + L L YL++++ +
Sbjct: 130 LTTLYISRNNIENDGAKHISALKQLTLLNISSNNIEEEGAKYIGKLEKLTYLDISKNDIR 189
Query: 242 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN 301
+G S++ L L + N I +E HL LTNL L G EG +++ +
Sbjct: 190 SNGALYISELKQLTSLVISSNNIDEEGAAHLIKLTNLTELETVRNEFGAEGAKHISEMKQ 249
Query: 302 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG-SLRKLAGLSSLKSLNLDARQI 360
L L ++D +G G +++S + L +N+ I+D + L+ L L ++ I
Sbjct: 250 LINLNINDNFIGDEGAKYISEMKQLTILNIGSNEITDRVNFENFGQLNQLTELYIEDNSI 309
Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
++ L L LD+ G + GA Y+
Sbjct: 310 QTNACKYISQLQNLNLLDISGNNVDAEGAKYI 341
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 77/278 (27%), Positives = 122/278 (43%), Gaps = 30/278 (10%)
Query: 81 SNLQSLDFNFCIQ--ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL 138
N+++L NF I+ + + G+ L S LT+L RNN I G K + L L L++
Sbjct: 102 QNIETLSVNFRIKGVVFNCGVFDLMSKS-LTTLYISRNN-IENDGAKHISALKQLTLLNI 159
Query: 139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIA 198
G + L KL L+I N I + +S L L SL IS + + + G A
Sbjct: 160 SSNNIEEEGAKYIGKLEKLTYLDISK-NDIRSNGALYISELKQLTSLVISSNNIDEEGAA 218
Query: 199 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 258
+L L LT L A +S + L LN+N + D+G + S++ L +LN
Sbjct: 219 HLIKLTNLTELETVRNEFGAEGAKHISEMKQLINLNINDNFIGDEGAKYISEMKQLTILN 278
Query: 259 LGFNEITD--------------ECLV-----------HLKGLTNLESLNLDSCGIGDEGL 293
+G NEITD E + ++ L NL L++ + EG
Sbjct: 279 IGSNEITDRVNFENFGQLNQLTELYIEDNSIQTNACKYISQLQNLNLLDISGNNVDAEGA 338
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 331
++ + L LE+ +G+ G +H+S + LE + L
Sbjct: 339 KYISQMNQLTELEIHTNSLGNEGAKHISTMKELEYLYL 376
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 50/230 (21%), Positives = 101/230 (43%), Gaps = 1/230 (0%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
N I + K +S L L L IS + + + G Y+ L+KLT L++ + + +S
Sbjct: 138 NNIENDGAKHISALKQLTLLNISSNNIEEEGAKYIGKLEKLTYLDISKNDIRSNGALYIS 197
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
L L L ++ + ++G K+ +L L NE E H+ + L +LN++
Sbjct: 198 ELKQLTSLVISSNNIDEEGAAHLIKLTNLTELETVRNEFGAEGAKHISEMKQLINLNIND 257
Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSS-GLRHLSGLTNLESINLSFTGISDGSLRKL 344
IGDEG ++ + L L + ++ + L L + + I + + +
Sbjct: 258 NFIGDEGAKYISEMKQLTILNIGSNEITDRVNFENFGQLNQLTELYIEDNSIQTNACKYI 317
Query: 345 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRS 394
+ L +L L++ + G ++ + LT L++ + + GA ++ +
Sbjct: 318 SQLQNLNLLDISGNNVDAEGAKYISQMNQLTELEIHTNSLGNEGAKHIST 367
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 102/220 (46%), Gaps = 4/220 (1%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
L +D+S +D+ +G +++ + L SL + I + G HL L+NLT L RN
Sbjct: 176 EKLTYLDISKNDIRSNGALYISELKQLTSLVIS-SNNIDEEGAAHLIKLTNLTELETVRN 234
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDS-DMKP 175
A+G K + + L+ L++ G + + +L LNI N ITD + +
Sbjct: 235 -EFGAEGAKHISEMKQLINLNINDNFIGDEGAKYISEMKQLTILNI-GSNEITDRVNFEN 292
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
L L L I + + + Y+ LQ L LL++ G V A +S + L L +
Sbjct: 293 FGQLNQLTELYIEDNSIQTNACKYISQLQNLNLLDISGNNVDAEGAKYISQMNQLTELEI 352
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 275
+ L ++G + S + L+ L L N+++ E H++ +
Sbjct: 353 HTNSLGNEGAKHISTMKELEYLYLCDNDVSVEVKQHIREI 392
>gi|290982223|ref|XP_002673830.1| predicted protein [Naegleria gruberi]
gi|284087416|gb|EFC41086.1| predicted protein [Naegleria gruberi]
Length = 572
Score = 74.3 bits (181), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 83/291 (28%), Positives = 135/291 (46%), Gaps = 55/291 (18%)
Query: 151 LKGLMKLESLNIKWC----NCITDSDMKPLSGLTNLKSLQ-ISCSKVTDSGIAYLKGLQK 205
+ + KLES+ +C N + + +MK +S L NLK IS ++ + + L L+K
Sbjct: 214 FEHIRKLESITDLFCLTFRNNLFEEEMKFISPLGNLKKFHFISKGRIKEEAVKDLSTLKK 273
Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLN--------LNRCQLSD-------------DG 244
L L+L+ +TA L + SL N +N C LS+ G
Sbjct: 274 LEELHLDNNLITACNFPYLENMKSLNLQNNRIGNEGAINLCSLSNLTELNLSNNLIGGQG 333
Query: 245 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 304
+ F K+ LK+LNL N++ D +L LE+L+L IG+EGL N L LK
Sbjct: 334 LKYFYKLSQLKILNLSSNQVGDVGANYLSENVKLENLSLKESLIGEEGLRNFGNLKLLKY 393
Query: 305 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL-------------------- 344
L L++ ++G+ GL++LS LE +++ I D S+ +L
Sbjct: 394 LMLNNNKIGN-GLKYLSNCNELEYLHVGSNDIGDESVIELFRSEFRNLIHLDISHNYVSY 452
Query: 345 ------AGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARITDSG 388
+ ++ LK LN+ + I DTGL+ L+ L+ + L+ ++DSG
Sbjct: 453 KCCDVISKMNQLKELNISNNPSIGDTGLSLLSPLS-IIKLEANNCGVSDSG 502
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 85/295 (28%), Positives = 139/295 (47%), Gaps = 15/295 (5%)
Query: 82 NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC 141
NL+ F +I + ++ L L L L NN ITA F L N+ L+L+
Sbjct: 248 NLKKFHFISKGRIKEEAVKDLSTLKKLEELHLD-NNLITACN---FPYLENMKSLNLQNN 303
Query: 142 TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLK 201
+ G +NL L L LN+ N I +K L+ LK L +S ++V D G YL
Sbjct: 304 RIGNEGAINLCSLSNLTELNLS-NNLIGGQGLKYFYKLSQLKILNLSSNQVGDVGANYLS 362
Query: 202 GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 261
KL L+L+ + L + L L YL LN ++ +G + S L+ L++G
Sbjct: 363 ENVKLENLSLKESLIGEEGLRNFGNLKLLKYLMLNNNKIG-NGLKYLSNCNELEYLHVGS 421
Query: 262 NEITDECLVHL--KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLR 318
N+I DE ++ L NL L++ + + ++ + LK L +S+ +G +GL
Sbjct: 422 NDIGDESVIELFRSEFRNLIHLDISHNYVSYKCCDVISKMNQLKELNISNNPSIGDTGLS 481
Query: 319 HLSGLT--NLESINLSFTGISD-GSLRKLAGLSSLKSLNLDARQITDTGLAALTS 370
LS L+ LE+ N G+SD G + L + +L++ + ++++ L AL S
Sbjct: 482 LLSPLSIIKLEANN---CGVSDSGIIDYLNFEPKISTLHIKSNKLSNMTLQALIS 533
>gi|158429244|pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 94/297 (31%), Positives = 142/297 (47%), Gaps = 47/297 (15%)
Query: 92 IQISDGGLEHLRGLSNLTSLS--FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLV 149
I S+ L + L NLT L NN I + A L NL L L + +
Sbjct: 68 INFSNNQLTDITPLKNLTKLVDILMNNNQIA--DITPLANLTNLTGLTL-----FNNQIT 120
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL 209
++ L L +LN + T SD+ LSGLT+L+ L S ++VTD LK L LT
Sbjct: 121 DIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTD-----LKPLANLT-- 173
Query: 210 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
LE +++ + +S L K + + SL N N+I+D +
Sbjct: 174 TLERLDISSNKVSDISVLA------------------KLTNLESLIATN---NQISD--I 210
Query: 270 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 329
L LTNL+ L+L+ + D G L L NL L+L++ Q+ S L LSGLT L +
Sbjct: 211 TPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPLSGLTKLTEL 266
Query: 330 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+ I+D
Sbjct: 267 KLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISD 319
>gi|87308227|ref|ZP_01090369.1| hypothetical protein DSM3645_21557 [Blastopirellula marina DSM
3645]
gi|87289309|gb|EAQ81201.1| hypothetical protein DSM3645_21557 [Blastopirellula marina DSM
3645]
Length = 376
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 74/280 (26%), Positives = 132/280 (47%), Gaps = 4/280 (1%)
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNC-ITDSDMKPL 176
A T + ++ L ++ +L L R +++ + + +M+L L + + TD DM+ +
Sbjct: 71 AATEENLRHLVKLPHVERLWLGRSFKLNER--SWEAIMQLRELEYLYLHSQPTDDDMRQI 128
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LTNL++L I +++ G+ YL+ L+ L L ++ C L+ + SL L L
Sbjct: 129 AQLTNLRTLLIDGRNLSNIGLWYLEELRFLENLTIQSASFDGDCFHYLANVRSLTNLTLQ 188
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
+L ++ L++L L + + LT+L SLNL + E + L
Sbjct: 189 SDKLKSSDLAGLGELPQLELLFLSVQSVDGAGFAEIGKLTHLRSLNLRNVRTTAEQMKPL 248
Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
L L+ L ++D+ + GL + L +L + L+ + I D L L L L +LNL
Sbjct: 249 AQLQELQFLTMNDSSI-KGGLGPIGDLRDLHRLELANSTIRDEDLDSLQQLPLLANLNLA 307
Query: 357 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRSKF 396
+ITD GL L + L L++ +T G L+ K+
Sbjct: 308 HTKITDAGLVKLGQMKRLNTLNVRNTTVTKEGLQALQGKW 347
>gi|300867094|ref|ZP_07111761.1| Leucine Rich Repeat domain protein (fragment) [Oscillatoria sp. PCC
6506]
gi|300334925|emb|CBN56927.1| Leucine Rich Repeat domain protein (fragment) [Oscillatoria sp. PCC
6506]
Length = 334
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 95/282 (33%), Positives = 136/282 (48%), Gaps = 46/282 (16%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
+ LS+LT+L + NN I+ +K L NL LDL + ++K L L LN+
Sbjct: 81 QTLSSLTAL-YLYNNQIS--DLKPLQSLTNLTWLDLN-----DNQISDIKPLQSLTKLNV 132
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
+ SD+KPL LTNL SL + +K++D +K L+ LT L+L
Sbjct: 133 LILHSNKISDIKPLESLTNLTSLSLYSNKISD-----IKPLESLTNLDL----------- 176
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282
L L+ ++SD + + L +L L N+I D + L+ LTNL SL+
Sbjct: 177 ----------LELHNNKISD--IKPLQSLTKLNLLQLHNNQIGD--IKPLQSLTNLTSLS 222
Query: 283 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 342
L S I D L L L NL L+LS+ ++ S ++ L LT L ++LS ISD +
Sbjct: 223 LYSNKISDITL--LQSLTNLTILDLSNNKI--SDIKPLEFLTKLNILDLSNNKISD--IE 276
Query: 343 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 384
L L+ L L L QI+D + L SLT L L L G I
Sbjct: 277 PLQSLTKLTILYLYNNQISD--IKTLKSLTKLMLLYLGGNSI 316
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 92/166 (55%), Gaps = 12/166 (7%)
Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 280
L L +L +L +L+LN Q+SD + + L VL L N+I+D + L+ LTNL S
Sbjct: 99 LKPLQSLTNLTWLDLNDNQISD--IKPLQSLTKLNVLILHSNKISD--IKPLESLTNLTS 154
Query: 281 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 340
L+L S I D + L L NL LEL + ++ S ++ L LT L + L I G
Sbjct: 155 LSLYSNKISD--IKPLESLTNLDLLELHNNKI--SDIKPLQSLTKLNLLQLHNNQI--GD 208
Query: 341 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
++ L L++L SL+L + +I+D L L SLT LT LDL +I+D
Sbjct: 209 IKPLQSLTNLTSLSLYSNKISDITL--LQSLTNLTILDLSNNKISD 252
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 109/230 (47%), Gaps = 30/230 (13%)
Query: 76 HLKDCSNLQSL-DFNFCI----QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL 130
+ D LQSL N I +ISD ++ L L+NLTSLS N +K L
Sbjct: 117 QISDIKPLQSLTKLNVLILHSNKISD--IKPLESLTNLTSLSLYSNK---ISDIKPLESL 171
Query: 131 INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS 190
NL L+L + + ++K L L LN+ + D+KPL LTNL SL + +
Sbjct: 172 TNLDLLELH-----NNKISDIKPLQSLTKLNLLQLHNNQIGDIKPLQSLTNLTSLSLYSN 226
Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 250
K++D I L+ L LT+L+L ++ + L L L L+L+ ++SD E
Sbjct: 227 KISD--ITLLQSLTNLTILDLSNNKISD--IKPLEFLTKLNILDLSNNKISD--IEPLQS 280
Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNL-------ESLNLDSCGIGDEGL 293
+ L +L L N+I+D + LK LT L S++ +C + E +
Sbjct: 281 LTKLTILYLYNNQISD--IKTLKSLTKLMLLYLGGNSIDTKTCPLSPESI 328
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 83/170 (48%), Gaps = 12/170 (7%)
Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 276
T C + L SL L L Q+SD + + +L L+L N+I+D + L+ LT
Sbjct: 73 TTECEAANQTLSSLTALYLYNNQISD--LKPLQSLTNLTWLDLNDNQISD--IKPLQSLT 128
Query: 277 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 336
L L L S I D + L L NL L L ++ S ++ L LTNL+ + L I
Sbjct: 129 KLNVLILHSNKISD--IKPLESLTNLTSLSLYSNKI--SDIKPLESLTNLDLLELHNNKI 184
Query: 337 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
SD ++ L L+ L L L QI D + L SLT LT L L+ +I+D
Sbjct: 185 SD--IKPLQSLTKLNLLQLHNNQIGD--IKPLQSLTNLTSLSLYSNKISD 230
Score = 42.0 bits (97), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 56/109 (51%), Gaps = 12/109 (11%)
Query: 278 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 337
LE C ++ L +LT L L + Q+ S L+ L LTNL ++L+ IS
Sbjct: 68 LEKAETTECEAANQTLSSLTALY------LYNNQI--SDLKPLQSLTNLTWLDLNDNQIS 119
Query: 338 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
D ++ L L+ L L L + +I+D + L SLT LT L L+ +I+D
Sbjct: 120 D--IKPLQSLTKLNVLILHSNKISD--IKPLESLTNLTSLSLYSNKISD 164
>gi|449269519|gb|EMC80282.1| F-box/LRR-repeat protein 14, partial [Columba livia]
Length = 344
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 105/314 (33%), Positives = 161/314 (51%), Gaps = 36/314 (11%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM ++ L+L C + G + + L S
Sbjct: 1 RGIRRVQILSLRRSLSYVIQGMA------DIESLNLSGCYNLTDNGLGHAFVAEISSLRS 54
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LN+ C ITDS + ++ LK L++ CS +T++G+ + GLQ+L LNL C
Sbjct: 55 LNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSC 112
Query: 215 PVTA-------ACLDSLSALG--SLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-N 262
+ A + +A G L L L CQ LSD + ++ +G L+ LNL F
Sbjct: 113 RHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLSDLSLKHLARGLGRLRQLNLSFCG 172
Query: 263 EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRH 319
I+D L+HL +++L SLNL SC I D G+++L G L L++S +VG L +
Sbjct: 173 GISDAGLLHLSHMSSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAY 232
Query: 320 LS-GLTNLESINLSFTGISD-GSLRKLAGLSSLKSLNL-DARQITDTGLAALTS-LTGLT 375
++ GL L S++L ISD G R + + L++LN+ +ITD GL + L+ LT
Sbjct: 233 IAQGLDGLRSLSLCSCHISDEGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLT 292
Query: 376 HLDLFG-ARITDSG 388
+DL+G RIT G
Sbjct: 293 GIDLYGCTRITKRG 306
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 97/315 (30%), Positives = 167/315 (53%), Gaps = 32/315 (10%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
++ ++++SL+ + C ++D GL H + +S+L SL+ IT + A + L
Sbjct: 19 IQGMADIESLNLSGCYNLTDNGLGHAFVAEISSLRSLNLSLCKQITDSSLGRIAQYLKGL 78
Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LK 183
L+L C+ I G L+ GL +L+SLN++ C ++D + L+G+T L+
Sbjct: 79 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLE 138
Query: 184 SLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-Q 239
L + C K++D + +L +GL +L LNL C ++ A L LS + SL LNL C
Sbjct: 139 QLTLQDCQKLSDLSLKHLARGLGRLRQLNLSFCGGISDAGLLHLSHMSSLRSLNLRSCDN 198
Query: 240 LSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGLVN 295
+SD G + +GSL++ L++ F +++ D+ L ++ +GL L SL+L SC I DEG+
Sbjct: 199 ISDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLRSLSLCSCHISDEGINR 257
Query: 296 LT----GLCNL---KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 348
+ GL L +C+ ++D + HLS LT ++ T I+ L ++ L
Sbjct: 258 MVRQMHGLRTLNIGQCVRITDKGLELIA-EHLSQLTGIDLYG--CTRITKRGLERITQLP 314
Query: 349 SLKSLNLDARQITDT 363
LK LNL ++T++
Sbjct: 315 CLKVLNLGLWEMTES 329
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 90/201 (44%), Gaps = 49/201 (24%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAF 127
++D+GL+HL S+L+SL+ C ISD G+ HL G L+ L + + Q +
Sbjct: 174 ISDAGLLHLSHMSSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYI 233
Query: 128 AGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
A +GL L SL++ C+ + + + + L++L I
Sbjct: 234 A-----------------------QGLDGLRSLSLCSCHISDEGINRMVRQMHGLRTLNI 270
Query: 188 -SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 245
C ++TD G+ + + L +LT ++L GC +++ G
Sbjct: 271 GQCVRITDKGLELIAEHLSQLTGIDLYGCT-----------------------RITKRGL 307
Query: 246 EKFSKIGSLKVLNLGFNEITD 266
E+ +++ LKVLNLG E+T+
Sbjct: 308 ERITQLPCLKVLNLGLWEMTE 328
>gi|440802726|gb|ELR23655.1| leucine rich repeat domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 634
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 99/320 (30%), Positives = 158/320 (49%), Gaps = 55/320 (17%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSL-----SFRRNNAITAQGMKAFAGLINLVK 135
LQ+L+ ++C I++ GL++LRGL++LTSL SFR +T++G+K+ +L
Sbjct: 280 PQLQTLNLSYCPNITNHGLKYLRGLTSLTSLDLCSPSFR----VTSEGLKSLPS--SLRS 333
Query: 136 LDLERCTRI-HGGLVNLKGL-MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKV 192
LD+ ++ G+ L+ + L+ LNI CN +T+ M+ L L+++ +S C +
Sbjct: 334 LDISYMDKLTDEGIKALRAVCPDLQVLNISKCNKVTNDGMRFLPA--KLRTIFLSHCYNI 391
Query: 193 TDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG 252
TD GIA L V L++ + + L+DDG +
Sbjct: 392 TDEGIANLA--------------VAVPLLEN---------FHFSYSSLTDDGVRHLPR-- 426
Query: 253 SLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD-T 310
+LK LNL F ++T+E + HL + L+ S I DEGL L ++ L+LS
Sbjct: 427 ALKALNLSFCPKLTNEGMRHLPPHLHTLLLSY-SYKITDEGLRALPP--SIATLKLSRFF 483
Query: 311 QVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAAL 368
++ GL+HL L S++LS +SD + +L +L LNL ITD G+A L
Sbjct: 484 EITDDGLQHLP--PALRSLDLSLCDRVSDQGMSRLP--PTLAELNLSRCDGITDAGVAQL 539
Query: 369 TSLTGLTHLDL-FGARITDS 387
L LDL F +TD+
Sbjct: 540 PR--SLGKLDLSFTKHVTDA 557
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 71/245 (28%), Positives = 117/245 (47%), Gaps = 40/245 (16%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS---KVTDSGIAYLKGLQKLTLLNLE 212
+L++LN+ +C IT+ +K L GLT+L SL + CS +VT G L+
Sbjct: 281 QLQTLNLSYCPNITNHGLKYLRGLTSLTSLDL-CSPSFRVTSEG--------------LK 325
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI-GSLKVLNLGF-NEITDECLV 270
P + LD + Y++ +L+D+G + + L+VLN+ N++T++ +
Sbjct: 326 SLPSSLRSLD-------ISYMD----KLTDEGIKALRAVCPDLQVLNISKCNKVTNDGMR 374
Query: 271 HLKGLTNLESLNLDSC-GIGDEGLVNL-TGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 328
L L ++ L C I DEG+ NL + L+ S + + G+RHL L++
Sbjct: 375 FLPA--KLRTIFLSHCYNITDEGIANLAVAVPLLENFHFSYSSLTDDGVRHLP--RALKA 430
Query: 329 INLSF-TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 387
+NLSF +++ +R L L+ + +ITD GL AL L F ITD
Sbjct: 431 LNLSFCPKLTNEGMRHLPPHLHTLLLSY-SYKITDEGLRALPPSIATLKLSRF-FEITDD 488
Query: 388 GAAYL 392
G +L
Sbjct: 489 GLQHL 493
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 82/274 (29%), Positives = 134/274 (48%), Gaps = 24/274 (8%)
Query: 28 FRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLD 87
F L+ + L + D+ + +A L + S S +TD G+ HL L++L+
Sbjct: 375 FLPAKLRTIFLSHCYNITDEGIANLAVAVPLLENFHFSYSSLTDDGVRHLPRA--LKALN 432
Query: 88 FNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HG 146
+FC ++++ G+ HL + LS+ + IT +G++A I +K L R I
Sbjct: 433 LSFCPKLTNEGMRHLPPHLHTLLLSY--SYKITDEGLRALPPSIATLK--LSRFFEITDD 488
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYL-KGLQ 204
GL +L L SL++ C+ ++D M L L L +S C +TD+G+A L + L
Sbjct: 489 GLQHLPP--ALRSLDLSLCDRVSDQGMSRLP--PTLAELNLSRCDGITDAGVAQLPRSLG 544
Query: 205 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG-SLKVLNLGFNE 263
KL L + VT ACL SL +L LNL+ C + E + + SL L L E
Sbjct: 545 KLDLSFTKH--VTDACLRSLPK--ALTSLNLSSC--PEITGEALADLPLSLSHLFLSHCE 598
Query: 264 -ITDECLVHLKGLTNLESLNLDSC-GIGDEGLVN 295
+TD+ L LE+L++ SC G+ ++ L++
Sbjct: 599 KVTDKIFTSLP--RPLETLDISSCSGVVEKYLLD 630
>gi|395743765|ref|XP_003777984.1| PREDICTED: F-box/LRR-repeat protein 14-like, partial [Pongo abelii]
Length = 296
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 99/319 (31%), Positives = 164/319 (51%), Gaps = 55/319 (17%)
Query: 72 SGLIH--LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAG 129
+GL H +++ +L++L+ + C QI+D L + AQ +K
Sbjct: 1 NGLGHAFVQEIGSLRALNLSLCKQITDSSLGRI------------------AQYLKG--- 39
Query: 130 LINLVKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN------ 181
L L+L C+ I G L+ GL +L+SLN++ C ++D + L+G+T
Sbjct: 40 ---LEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGC 96
Query: 182 --LKSLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLN 236
L+ L + C K+TD + ++ +GL L LLNL C ++ A L LS +GSL LNL
Sbjct: 97 LGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLR 156
Query: 237 RC-QLSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDE 291
C +SD G + +GSL++ L++ F +++ D+ L ++ +GL L+SL+L SC I D+
Sbjct: 157 SCDNISDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDD 215
Query: 292 GLVNLT----GLCNL---KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 344
G+ + GL L +C+ ++D + HLS LT ++ T I+ L ++
Sbjct: 216 GINRMVRQMHGLRTLNIGQCVRITDKGLELIA-EHLSQLTGIDLYG--CTRITKRGLERI 272
Query: 345 AGLSSLKSLNLDARQITDT 363
L LK LNL Q+TD+
Sbjct: 273 TQLPCLKVLNLGLWQMTDS 291
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 81/245 (33%), Positives = 129/245 (52%), Gaps = 29/245 (11%)
Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNL 211
L +LN+ C ITDS + ++ LK L++ CS +T++G+ + GLQ+L LNL
Sbjct: 14 LRALNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNL 71
Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 271
C LS +G + R + +GC ++ +L+ ++TD L H
Sbjct: 72 RSCR-------HLSDVGIGHLAGMTRS--AAEGCLGLEQL-TLQ----DCQKLTDLSLKH 117
Query: 272 L-KGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLEL-SDTQVGSSGLRHLS-GLTNLE 327
+ +GLT L LNL CG I D GL++L+ + +L+ L L S + +G+ HL+ G L
Sbjct: 118 ISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLS 177
Query: 328 SINLSFT-GISDGSLRKLA-GLSSLKSLNLDARQITDTGLAALT-SLTGLTHLDLFG-AR 383
+++SF + D SL +A GL LKSL+L + I+D G+ + + GL L++ R
Sbjct: 178 GLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVR 237
Query: 384 ITDSG 388
ITD G
Sbjct: 238 ITDKG 242
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 103/204 (50%), Gaps = 29/204 (14%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ + + L+ L+ +FC ISD GL HL + +L SL+ R + I+ G+
Sbjct: 110 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 169
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C ++ + +GL L+SL++ C+ D + + + L++
Sbjct: 170 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 229
Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
L I C ++TD G+ + + L +LT ++L GC +++
Sbjct: 230 LNIGQCVRITDKGLELIAEHLSQLTGIDLYGCT-----------------------RITK 266
Query: 243 DGCEKFSKIGSLKVLNLGFNEITD 266
G E+ +++ LKVLNLG ++TD
Sbjct: 267 RGLERITQLPCLKVLNLGLWQMTD 290
>gi|168700133|ref|ZP_02732410.1| hypothetical protein GobsU_11435 [Gemmata obscuriglobus UQM 2246]
Length = 167
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/148 (38%), Positives = 89/148 (60%), Gaps = 1/148 (0%)
Query: 242 DDGCEKFSKIGS-LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
D G ++ + + L LNL +TD + L L L +L+L G+ D G+ L+GL
Sbjct: 5 DAGVKELAALNKGLTTLNLRRTRVTDVGVKELAALKALTNLDLGGTGVTDAGVKELSGLK 64
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
L LEL T++ +G++ L+ L NL ++L T ++D ++L+GL+ L +L+L Q+
Sbjct: 65 GLTRLELRSTKITDAGVKELAALKNLNHLDLGGTKVTDAGAKELSGLNFLVTLDLSNTQV 124
Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSG 388
TD G+ ALT+LTGLT LDL G +TD+G
Sbjct: 125 TDAGVKALTALTGLTTLDLHGTGVTDAG 152
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 85/153 (55%), Gaps = 1/153 (0%)
Query: 219 ACLDSLSALGS-LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 277
A + L+AL L LNL R +++D G ++ + + +L L+LG +TD + L GL
Sbjct: 6 AGVKELAALNKGLTTLNLRRTRVTDVGVKELAALKALTNLDLGGTGVTDAGVKELSGLKG 65
Query: 278 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 337
L L L S I D G+ L L NL L+L T+V +G + LSGL L +++LS T ++
Sbjct: 66 LTRLELRSTKITDAGVKELAALKNLNHLDLGGTKVTDAGAKELSGLNFLVTLDLSNTQVT 125
Query: 338 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 370
D ++ L L+ L +L+L +TD GL L +
Sbjct: 126 DAGVKALTALTGLTTLDLHGTGVTDAGLKELNA 158
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 85/152 (55%), Gaps = 1/152 (0%)
Query: 194 DSGIAYLKGLQK-LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG 252
D+G+ L L K LT LNL VT + L+AL +L L+L ++D G ++ S +
Sbjct: 5 DAGVKELAALNKGLTTLNLRRTRVTDVGVKELAALKALTNLDLGGTGVTDAGVKELSGLK 64
Query: 253 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 312
L L L +ITD + L L NL L+L + D G L+GL L L+LS+TQV
Sbjct: 65 GLTRLELRSTKITDAGVKELAALKNLNHLDLGGTKVTDAGAKELSGLNFLVTLDLSNTQV 124
Query: 313 GSSGLRHLSGLTNLESINLSFTGISDGSLRKL 344
+G++ L+ LT L +++L TG++D L++L
Sbjct: 125 TDAGVKALTALTGLTTLDLHGTGVTDAGLKEL 156
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 84/153 (54%), Gaps = 1/153 (0%)
Query: 170 DSDMKPLSGLTN-LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG 228
D+ +K L+ L L +L + ++VTD G+ L L+ LT L+L G VT A + LS L
Sbjct: 5 DAGVKELAALNKGLTTLNLRRTRVTDVGVKELAALKALTNLDLGGTGVTDAGVKELSGLK 64
Query: 229 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 288
L L L +++D G ++ + + +L L+LG ++TD L GL L +L+L + +
Sbjct: 65 GLTRLELRSTKITDAGVKELAALKNLNHLDLGGTKVTDAGAKELSGLNFLVTLDLSNTQV 124
Query: 289 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 321
D G+ LT L L L+L T V +GL+ L+
Sbjct: 125 TDAGVKALTALTGLTTLDLHGTGVTDAGLKELN 157
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 79/140 (56%), Gaps = 1/140 (0%)
Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
L +LN++ +TD +K L+ L L +L + + VTD+G+ L GL+ LT L L +
Sbjct: 18 LTTLNLRRTR-VTDVGVKELAALKALTNLDLGGTGVTDAGVKELSGLKGLTRLELRSTKI 76
Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 276
T A + L+AL +L +L+L +++D G ++ S + L L+L ++TD + L LT
Sbjct: 77 TDAGVKELAALKNLNHLDLGGTKVTDAGAKELSGLNFLVTLDLSNTQVTDAGVKALTALT 136
Query: 277 NLESLNLDSCGIGDEGLVNL 296
L +L+L G+ D GL L
Sbjct: 137 GLTTLDLHGTGVTDAGLKEL 156
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 82/155 (52%), Gaps = 3/155 (1%)
Query: 96 DGGLEHLRGLSN-LTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGL 154
D G++ L L+ LT+L+ RR +T G+K A L L LDL G+ L GL
Sbjct: 5 DAGVKELAALNKGLTTLNLRRTR-VTDVGVKELAALKALTNLDLGGTGVTDAGVKELSGL 63
Query: 155 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 214
L L ++ ITD+ +K L+ L NL L + +KVTD+G L GL L L+L
Sbjct: 64 KGLTRLELRSTK-ITDAGVKELAALKNLNHLDLGGTKVTDAGAKELSGLNFLVTLDLSNT 122
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 249
VT A + +L+AL L L+L+ ++D G ++ +
Sbjct: 123 QVTDAGVKALTALTGLTTLDLHGTGVTDAGLKELN 157
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 61/181 (33%), Positives = 86/181 (47%), Gaps = 27/181 (14%)
Query: 46 DKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGL 105
D + +A+ L +++L + VTD G+ L L +LD ++D G++ L GL
Sbjct: 5 DAGVKELAALNKGLTTLNLRRTRVTDVGVKELAALKALTNLDLGGT-GVTDAGVKELSGL 63
Query: 106 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC 165
LT L R + IT G+K A L NL LDL GG
Sbjct: 64 KGLTRLELR-STKITDAGVKELAALKNLNHLDL-------GG------------------ 97
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
+TD+ K LSGL L +L +S ++VTD+G+ L L LT L+L G VT A L L+
Sbjct: 98 TKVTDAGAKELSGLNFLVTLDLSNTQVTDAGVKALTALTGLTTLDLHGTGVTDAGLKELN 157
Query: 226 A 226
A
Sbjct: 158 A 158
>gi|300704109|ref|YP_003745711.1| leucine-rich-repeat type III effector protein (gala5) [Ralstonia
solanacearum CFBP2957]
gi|299071772|emb|CBJ43096.1| leucine-rich-repeat type III effector protein (GALA5) [Ralstonia
solanacearum CFBP2957]
Length = 535
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 91/351 (25%), Positives = 153/351 (43%), Gaps = 32/351 (9%)
Query: 70 TDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR----NNAITAQGMK 125
TD+ L L L++LD + C + GL G+++L+ L R N I G++
Sbjct: 128 TDADLAGLPPT--LKTLDLSRC-RGRGQGLITAAGIAHLSRLPLVRLNLSGNRIGLAGVQ 184
Query: 126 AFAGLINLVKLDLERC----------------TRIHG--------GLVNLKGLMKLESLN 161
A L +LD+ RC T ++ G+ L G L SL+
Sbjct: 185 RLANHPTLTELDVSRCGIGPEEARALAASARLTTLNASHNGVGSEGVQALVGCKTLTSLD 244
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 221
+ N + D++ + L L +L ++ +++ G L + LT L++ G + A +
Sbjct: 245 LS-DNGLGDAEAQRLGSSERLTTLNVNRNRIDVQGARALAACKTLTSLDIGGNSIGDAGV 303
Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 281
++L A L LN+ R ++ G + + +L L + N I DE L T+L +L
Sbjct: 304 NALVANAQLTTLNVERAEIGAHGVQALADCKTLTSLRIDNNNIGDEGANTLAASTSLTTL 363
Query: 282 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 341
+ +S GIG G L L L L +G +G + T L +++ G+SD
Sbjct: 364 HSESNGIGPTGAQALAANTRLTTLNLGHNSIGDAGAQAWLANTTLVWLSVRRNGLSDACA 423
Query: 342 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
+LA +L +L+ I D G AL + LT L++ I ++GA L
Sbjct: 424 IRLAASKTLTTLDASDNAIKDAGARALAANRTLTALNVSSNEIGNAGARAL 474
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 81/300 (27%), Positives = 133/300 (44%), Gaps = 13/300 (4%)
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGL-----EHLRGLSNLTSLSFRR 115
+++ S + V G+ L C L SLD +SD GL + L LT+L+ R
Sbjct: 218 TLNASHNGVGSEGVQALVGCKTLTSLD------LSDNGLGDAEAQRLGSSERLTTLNVNR 271
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
N I QG +A A L LD+ + G+ L +L +LN++ I ++
Sbjct: 272 NR-IDVQGARALAACKTLTSLDIGGNSIGDAGVNALVANAQLTTLNVERAE-IGAHGVQA 329
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
L+ L SL+I + + D G L LT L+ E + +L+A L LNL
Sbjct: 330 LADCKTLTSLRIDNNNIGDEGANTLAASTSLTTLHSESNGIGPTGAQALAANTRLTTLNL 389
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
+ D G + + +L L++ N ++D C + L L +L+ I D G
Sbjct: 390 GHNSIGDAGAQAWLANTTLVWLSVRRNGLSDACAIRLAASKTLTTLDASDNAIKDAGARA 449
Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355
L L L +S ++G++G R L+ T L+S++L + + +R L +L SL +
Sbjct: 450 LAANRTLTALNVSSNEIGNAGARALAANTMLKSLDLRNNRMLEAGVRALLANRTLSSLGV 509
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 88/335 (26%), Positives = 146/335 (43%), Gaps = 3/335 (0%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
L+ ++LSG+ + +G+ L + L LD + C I L + LT+L+ +N
Sbjct: 167 PLVRLNLSGNRIGLAGVQRLANHPTLTELDVSRC-GIGPEEARALAASARLTTLNAS-HN 224
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
+ ++G++A G L LDL L +L +LN+ N I + L+
Sbjct: 225 GVGSEGVQALVGCKTLTSLDLSDNGLGDAEAQRLGSSERLTTLNVNR-NRIDVQGARALA 283
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
L SL I + + D+G+ L +LT LN+E + A + +L+ +L L ++
Sbjct: 284 ACKTLTSLDIGGNSIGDAGVNALVANAQLTTLNVERAEIGAHGVQALADCKTLTSLRIDN 343
Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
+ D+G + SL L+ N I L T L +LNL IGD G
Sbjct: 344 NNIGDEGANTLAASTSLTTLHSESNGIGPTGAQALAANTRLTTLNLGHNSIGDAGAQAWL 403
Query: 298 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 357
L L + + + L+ L +++ S I D R LA +L +LN+ +
Sbjct: 404 ANTTLVWLSVRRNGLSDACAIRLAASKTLTTLDASDNAIKDAGARALAANRTLTALNVSS 463
Query: 358 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
+I + G AL + T L LDL R+ ++G L
Sbjct: 464 NEIGNAGARALAANTMLKSLDLRNNRMLEAGVRAL 498
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 78/276 (28%), Positives = 119/276 (43%), Gaps = 3/276 (1%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
+L S+DLS + + D+ L L +L+ N +I G L LTSL N
Sbjct: 239 TLTSLDLSDNGLGDAEAQRLGSSERLTTLNVNRN-RIDVQGARALAACKTLTSLDIG-GN 296
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
+I G+ A L L++ER G+ L L SL I N I D L+
Sbjct: 297 SIGDAGVNALVANAQLTTLNVERAEIGAHGVQALADCKTLTSLRID-NNNIGDEGANTLA 355
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
T+L +L + + +G L +LT LNL + A + A +L +L++ R
Sbjct: 356 ASTSLTTLHSESNGIGPTGAQALAANTRLTTLNLGHNSIGDAGAQAWLANTTLVWLSVRR 415
Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
LSD + + +L L+ N I D L L +LN+ S IG+ G L
Sbjct: 416 NGLSDACAIRLAASKTLTTLDASDNAIKDAGARALAANRTLTALNVSSNEIGNAGARALA 475
Query: 298 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333
LK L+L + ++ +G+R L L S+ +SF
Sbjct: 476 ANTMLKSLDLRNNRMLEAGVRALLANRTLSSLGVSF 511
>gi|85679222|gb|ABC72027.1| InlA [Listeria monocytogenes]
Length = 791
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 100/314 (31%), Positives = 158/314 (50%), Gaps = 30/314 (9%)
Query: 74 LIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINL 133
+ LKD + L + N QI+D + L L+NLT L+ NN IT + A L NL
Sbjct: 112 ITPLKDLTKLVDIVMNNN-QITD--ISPLANLTNLTGLTLF-NNQIT--DIDALKNLTNL 165
Query: 134 VKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT 193
+L++ T + L GL L+ L+ N +TD +KPL+ LT L+ L IS +KV+
Sbjct: 166 NRLEITGNTI--SDISVLSGLTSLQQLSF--GNQVTD--LKPLANLTTLERLDISSNKVS 219
Query: 194 D-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG 252
D S +A L L++L N + +T L L +L L+LN QL D G + +
Sbjct: 220 DISVLAKLTNLERLIATNNQISDITP-----LGILTNLDELSLNGNQLKDIGT--LASLT 272
Query: 253 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 312
+L L++ N+I++ L L GLT L L L I + + + GL L LEL + Q+
Sbjct: 273 NLTSLDVANNQISN--LAPLSGLTKLTELELGYNQISN--ISPIEGLTALTSLELHENQL 328
Query: 313 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 372
+ +S L NL + L F ISD + ++ L+ L+ L +++D +++L +LT
Sbjct: 329 --EDISPISNLKNLTYLALYFNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLT 382
Query: 373 GLTHLDLFGARITD 386
+ L +I+D
Sbjct: 383 NINWLSAAHNQISD 396
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 79/144 (54%), Gaps = 14/144 (9%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N GFN++TD + LK LT L + +++ I D + L L NL
Sbjct: 91 DGLEY---LNNLTQINFGFNQLTD--ITPLKDLTKLVDIVMNNNQITD--ISPLANLTNL 143
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + + L LTNL + ++ ISD S+ L+GL+SL+ L+ Q+TD
Sbjct: 144 TGLTLFNNQI--TDIDALKNLTNLNRLEITGNTISDISV--LSGLTSLQQLSF-GNQVTD 198
Query: 363 TGLAALTSLTGLTHLDLFGARITD 386
L L +LT L LD+ +++D
Sbjct: 199 --LKPLANLTTLERLDISSNKVSD 220
>gi|87307225|ref|ZP_01089370.1| hypothetical protein DSM3645_16920 [Blastopirellula marina DSM
3645]
gi|87289965|gb|EAQ81854.1| hypothetical protein DSM3645_16920 [Blastopirellula marina DSM
3645]
Length = 378
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 61/113 (53%)
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
+ +L + DE L L + N+ + L T+V +GL HL+GL LE +NL+ T ++D
Sbjct: 252 TYHLSDKPVHDEALAPLRKIGNVVEINLMGTEVTDAGLEHLAGLKQLERLNLAKTKVTDS 311
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
LR LA L LNL A +++D G+ L SL L HL L+ + T A L
Sbjct: 312 GLRYLAACEKLSYLNLYATEVSDAGIDHLYSLPSLRHLYLWQTKATPESAKQL 364
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 59/121 (48%), Gaps = 8/121 (6%)
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
+NR S D + +L + DE L L+ + N+ +NL + D GL
Sbjct: 239 INRVAQSSDA--------KVVTYHLSDKPVHDEALAPLRKIGNVVEINLMGTEVTDAGLE 290
Query: 295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 354
+L GL L+ L L+ T+V SGLR+L+ L +NL T +SD + L L SL+ L
Sbjct: 291 HLAGLKQLERLNLAKTKVTDSGLRYLAACEKLSYLNLYATEVSDAGIDHLYSLPSLRHLY 350
Query: 355 L 355
L
Sbjct: 351 L 351
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 59/119 (49%), Gaps = 1/119 (0%)
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+L+ + D+ KIG++ +NL E+TD L HL GL LE LNL + D GL
Sbjct: 254 HLSDKPVHDEALAPLRKIGNVVEINLMGTEVTDAGLEHLAGLKQLERLNLAKTKVTDSGL 313
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL-AGLSSLK 351
L L L L T+V +G+ HL L +L + L T + S ++L A + LK
Sbjct: 314 RYLAACEKLSYLNLYATEVSDAGIDHLYSLPSLRHLYLWQTKATPESAKQLSAAIPGLK 372
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 50/88 (56%)
Query: 307 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 366
LSD V L L + N+ INL T ++D L LAGL L+ LNL ++TD+GL
Sbjct: 255 LSDKPVHDEALAPLRKIGNVVEINLMGTEVTDAGLEHLAGLKQLERLNLAKTKVTDSGLR 314
Query: 367 ALTSLTGLTHLDLFGARITDSGAAYLRS 394
L + L++L+L+ ++D+G +L S
Sbjct: 315 YLAACEKLSYLNLYATEVSDAGIDHLYS 342
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 56/105 (53%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
+ D + PL + N+ + + ++VTD+G+ +L GL++L LNL VT + L L+A
Sbjct: 260 VHDEALAPLRKIGNVVEINLMGTEVTDAGLEHLAGLKQLERLNLAKTKVTDSGLRYLAAC 319
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
L YLNL ++SD G + + SL+ L L + T E L
Sbjct: 320 EKLSYLNLYATEVSDAGIDHLYSLPSLRHLYLWQTKATPESAKQL 364
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 60/127 (47%)
Query: 205 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 264
K+ +L PV L L +G++ +NL +++D G E + + L+ LNL ++
Sbjct: 249 KVVTYHLSDKPVHDEALAPLRKIGNVVEINLMGTEVTDAGLEHLAGLKQLERLNLAKTKV 308
Query: 265 TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT 324
TD L +L L LNL + + D G+ +L L +L+ L L T+ + LS
Sbjct: 309 TDSGLRYLAACEKLSYLNLYATEVSDAGIDHLYSLPSLRHLYLWQTKATPESAKQLSAAI 368
Query: 325 NLESINL 331
+NL
Sbjct: 369 PGLKVNL 375
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 53/115 (46%)
Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
+ +S V D +A L+ + + +NL G VT A L+ L+ L L LNL + +++D
Sbjct: 252 TYHLSDKPVHDEALAPLRKIGNVVEINLMGTEVTDAGLEHLAGLKQLERLNLAKTKVTDS 311
Query: 244 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
G + L LNL E++D + HL L +L L L E L+
Sbjct: 312 GLRYLAACEKLSYLNLYATEVSDAGIDHLYSLPSLRHLYLWQTKATPESAKQLSA 366
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L ++L+ + VTDSGL +L C L L+ + ++SD G++HL L +L L + A
Sbjct: 298 LERLNLAKTKVTDSGLRYLAACEKLSYLNL-YATEVSDAGIDHLYSLPSLRHLYLWQTKA 356
Query: 119 ITAQGMKAFAGLINLVKLDL 138
T + K + I +K++L
Sbjct: 357 -TPESAKQLSAAIPGLKVNL 375
Score = 42.4 bits (98), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 55/128 (42%), Gaps = 3/128 (2%)
Query: 51 VIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTS 110
V S + +++ LS V D L L+ N+ ++ +++D GLEHL GL L
Sbjct: 242 VAQSSDAKVVTYHLSDKPVHDEALAPLRKIGNVVEINL-MGTEVTDAGLEHLAGLKQLER 300
Query: 111 LSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD 170
L+ + +T G++ A L L+L G+ +L L L L + W T
Sbjct: 301 LNLAKTK-VTDSGLRYLAACEKLSYLNLYATEVSDAGIDHLYSLPSLRHLYL-WQTKATP 358
Query: 171 SDMKPLSG 178
K LS
Sbjct: 359 ESAKQLSA 366
>gi|357619268|gb|EHJ71912.1| hypothetical protein KGM_06037 [Danaus plexippus]
Length = 453
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 74/240 (30%), Positives = 117/240 (48%), Gaps = 10/240 (4%)
Query: 9 QIFNELVYSRC--LTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG 66
Q+ EL + C +TE L A + L L + D+ + +A SL L
Sbjct: 192 QVLFELELTGCNEITEAGLWACLTPRIVSLTLTDCINIADEAVGAVAQLLPSLYEFSLQA 251
Query: 67 SDVTDSGLIHL--KDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQG 123
VTD+ L + K ++L L + C ++++ G+ ++ L NLT LS + +T +G
Sbjct: 252 YHVTDAALGYFSPKQSASLSILRLHSCWELTNHGVVNIVHSLPNLTVLSLSGCSKVTDEG 311
Query: 124 MKAFA-GLINLVKLDLERCTRIHGGLVNLKG--LMKLESLNIKWCNCITDSDMKPLSGLT 180
++ A L L LDL C R+ + L +LE L + C ITD + +S +
Sbjct: 312 VELLAENLPRLRSLDLSWCPRVTDNALEYIACDLNQLEELTLDRCVHITDIGVGYISTMQ 371
Query: 181 NLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC 238
+L +L + CS+V D G+ +L G++ L LL+L GCP +T+ L SL L L L L C
Sbjct: 372 SLAALFLRWCSQVRDFGVQHLCGMRSLQLLSLAGCPLLTSGGLSSLIQLRQLRELELTNC 431
>gi|384253405|gb|EIE26880.1| RNI-like protein [Coccomyxa subellipsoidea C-169]
Length = 641
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 112/409 (27%), Positives = 172/409 (42%), Gaps = 74/409 (18%)
Query: 55 QGSSLLSVDLSGSDVTDSG---------LIHLKDCSNLQSLD-FNFCIQISDGGLEHLRG 104
+G++L +DLSG D+T L L+ + Q L ++ C Q+ D E L
Sbjct: 57 RGTTLRKLDLSGCDLTMPAGTLLDLLWNLTQLEHLAIAQQLPKYDACFQVDDELCEALGR 116
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT-RIHGGLVNLKGLMKLESLNI- 162
+ LT L R+ + IT +G+ AGL L L L C + ++ +L L+I
Sbjct: 117 MRGLTHLDLRQPSPITGRGLDRLAGLERLRTLRLGPCAGLLDSSFQSIACHTQLTELDIC 176
Query: 163 -----KWCNCITDSDMKPLSGLTNLKSLQIS---CSKVTDSGIAYLKGLQKLTLLNLEGC 214
+ C + + L+ L NL SLQ++ S+ D + L L LT L L
Sbjct: 177 FGEKGRTCTSLPAEVLAQLATLPNLVSLQLAGFDTSRTED--LPSLHCLSTLTHLGLSQV 234
Query: 215 -----PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL-GFNEITDEC 268
P A + SL L LN+C + D S+ +L+ L++ + +
Sbjct: 235 TNSRSPGGVATFLRCMPIQSLIRLELNQCNIGIDVFPLISQATTLRALSVTQCSPVYGLD 294
Query: 269 LVHLKGLTNLESLNLD---------------------SCGIGDEGLV-----NLTGLC-- 300
L H+ GL+ LESL LD SC + L N+ GL
Sbjct: 295 LHHMSGLSRLESLTLDHSHPLSSNWSFLQHLTRLTQFSCAAHKDALPMSSDHNIAGLLEN 354
Query: 301 -----NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS-----------LRKL 344
+L+ L+L +G L ++ LT L +++S G S L +L
Sbjct: 355 AIARKDLQRLDLRGHLLGKE-LGDIAALTALTELDISAAGCDVASHPSIACVFNLGLAQL 413
Query: 345 AGLSSLKSLNLDARQITDTGLAALTS-LTGLTHLDLFGARITDSGAAYL 392
AGLS L+ LNL + + GL + S L L HLDL G+ + D+ A+L
Sbjct: 414 AGLSRLQRLNLACTAVDEEGLRGICSGLRELLHLDLSGSAVEDADLAHL 462
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 88/318 (27%), Positives = 147/318 (46%), Gaps = 45/318 (14%)
Query: 99 LEHLRGLSNLTSLSFRR-NNAITAQGMKAF---AGLINLVKLDLERCTRIHGGLVNLKGL 154
L L LS LT L + N+ + G+ F + +L++L+L +C +
Sbjct: 217 LPSLHCLSTLTHLGLSQVTNSRSPGGVATFLRCMPIQSLIRLELNQCNIGIDVFPLISQA 276
Query: 155 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL----N 210
L +L++ C+ + D+ +SGL+ L+SL + S S ++L+ L +LT +
Sbjct: 277 TTLRALSVTQCSPVYGLDLHHMSGLSRLESLTLDHSHPLSSNWSFLQHLTRLTQFSCAAH 336
Query: 211 LEGCPVT-----AACLDSLSALGSLFYLNLN------------------RCQLSDDGCEK 247
+ P++ A L++ A L L+L +S GC+
Sbjct: 337 KDALPMSSDHNIAGLLENAIARKDLQRLDLRGHLLGKELGDIAALTALTELDISAAGCDV 396
Query: 248 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL-TGLCNLKCLE 306
S V NLG L L GL+ L+ LNL + +EGL + +GL L L+
Sbjct: 397 ASHPSIACVFNLG--------LAQLAGLSRLQRLNLACTAVDEEGLRGICSGLRELLHLD 448
Query: 307 LSDTQVGSSGLRHLSGLTNLESINL----SFTGISDGSLRKLAGLSSLKSLNLDARQ-IT 361
LS + V + L HL+ L L+S+ + + ISD L +++ +S+L+ L + Q IT
Sbjct: 449 LSGSAVEDADLAHLTKLPRLQSLRINNQPALDDISDAGLAEVSRVSALRCLEVKGNQCIT 508
Query: 362 DTGLAALTSLTGLTHLDL 379
GL L++LTGL+ LD+
Sbjct: 509 AAGLKHLSALTGLSDLDV 526
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 61/123 (49%), Gaps = 5/123 (4%)
Query: 43 GVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFN---FCIQISDGGL 99
V+++ + I S LL +DLSGS V D+ L HL LQSL N ISD GL
Sbjct: 428 AVDEEGLRGICSGLRELLHLDLSGSAVEDADLAHLTKLPRLQSLRINNQPALDDISDAGL 487
Query: 100 EHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG--GLVNLKGLMKL 157
+ +S L L + N ITA G+K + L L LD+ C+ I+ L +L+G L
Sbjct: 488 AEVSRVSALRCLEVKGNQCITAAGLKHLSALTGLSDLDVSDCSAINPKRALNSLQGCTAL 547
Query: 158 ESL 160
L
Sbjct: 548 RML 550
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 75/295 (25%), Positives = 133/295 (45%), Gaps = 41/295 (13%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
SL+ ++L+ ++ + + L++L C + L H+ GLS L SL+ ++
Sbjct: 254 SLIRLELNQCNIGIDVFPLISQATTLRALSVTQCSPVYGLDLHHMSGLSRLESLTLDHSH 313
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLV-----NLKGLMKLESLNIKWCNCITDSD 172
+++ ++ L +L +L C L N+ GL++ N I D
Sbjct: 314 PLSSN----WSFLQHLTRLTQFSCAAHKDALPMSSDHNIAGLLE---------NAIARKD 360
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA----AC-----LDS 223
++ L +L ++ IA L L +L + + GC V + AC L
Sbjct: 361 LQRLDLRGHLLGKELG-------DIAALTALTELDI-SAAGCDVASHPSIACVFNLGLAQ 412
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKF-SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282
L+ L L LNL + ++G S + L L+L + + D L HL L L+SL
Sbjct: 413 LAGLSRLQRLNLACTAVDEEGLRGICSGLRELLHLDLSGSAVEDADLAHLTKLPRLQSLR 472
Query: 283 LDSCG----IGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLS 332
+++ I D GL ++ + L+CLE+ Q + ++GL+HLS LT L +++S
Sbjct: 473 INNQPALDDISDAGLAEVSRVSALRCLEVKGNQCITAAGLKHLSALTGLSDLDVS 527
>gi|167393817|ref|XP_001740724.1| F-box/leucine rich repeat protein [Entamoeba dispar SAW760]
gi|165895051|gb|EDR22856.1| F-box/leucine rich repeat protein, putative [Entamoeba dispar
SAW760]
Length = 659
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 80/337 (23%), Positives = 154/337 (45%), Gaps = 39/337 (11%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
LS SD G I+L C++L+ L N +++ L+ L + NL +S + ++
Sbjct: 260 LSPSD----GFIYLAGCNSLRYLYLNES-EVTSYHLDVLARMDNLLGISLKGCPTLSDYS 314
Query: 124 MKAF-AGLI--NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
+ F G I +L +L++ H GL + L L L+I CN I + PL+ L
Sbjct: 315 LTPFKTGPIRNSLEELNISDTMVTHIGLQIVARLKYLRVLDISRCNGI--KILSPLNSLK 372
Query: 181 NLKSLQISCSKVTDSGI--AYLKGLQKLTLLNLEGCPVTAACLDSL-SALGSLFYLNLNR 237
L+ L++S +V + A+ + L L ++ P+ + L + S +L +NL
Sbjct: 373 YLEVLRLSNVRVNSDTLQDAFRTPPKYLQQLLVDAGPIDDSLLTVICSKFPNLVSVNLKE 432
Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNL 296
Q++ G E + L+ ++ G + D+ L +T+LE+++ + C I EG+ L
Sbjct: 433 SQITSPGVEALQMVKYLRYVDFGKTSVDDQVFEFLCKITSLETISFEGCQNISGEGVHVL 492
Query: 297 TGLCNLKCL--------------ELSD-----------TQVGSSGLRHLSGLTNLESINL 331
L L+ L E+ D +Q+G G ++++ + ++ ++L
Sbjct: 493 EPLRGLRVLNFNGCKNFSEYALKEMEDLSVETLRVAGASQIGMMGWKYIAQIEQIKRLDL 552
Query: 332 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 368
SFT + D ++++ L+ + L ++TD + L
Sbjct: 553 SFTSVDDNGVQEILKSKWLEVIYLRHTKVTDKSIETL 589
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 67/227 (29%), Positives = 103/227 (45%), Gaps = 15/227 (6%)
Query: 175 PLSGLTNLKSLQISCSKVTDS-GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
P+SG+ S Q S+++ S G YL G L L L VT+ LD L+ + +L +
Sbjct: 247 PISGV----SAQTPLSQLSPSDGFIYLAGCNSLRYLYLNESEVTSYHLDVLARMDNLLGI 302
Query: 234 NLNRCQ-LSDDGCEKFSKIG----SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 288
+L C LSD F K G SL+ LN+ +T L + L L L++ C
Sbjct: 303 SLKGCPTLSDYSLTPF-KTGPIRNSLEELNISDTMVTHIGLQIVARLKYLRVLDISRCN- 360
Query: 289 GDEGLVNLTGLCNLKCLELSDTQVGSSGLR--HLSGLTNLESINLSFTGISDGSLRKL-A 345
G + L L L L+ L LS+ +V S L+ + L+ + + I D L + +
Sbjct: 361 GIKILSPLNSLKYLEVLRLSNVRVNSDTLQDAFRTPPKYLQQLLVDAGPIDDSLLTVICS 420
Query: 346 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
+L S+NL QIT G+ AL + L ++D + D +L
Sbjct: 421 KFPNLVSVNLKESQITSPGVEALQMVKYLRYVDFGKTSVDDQVFEFL 467
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 92/340 (27%), Positives = 134/340 (39%), Gaps = 56/340 (16%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
SNL SL C +IS L+ L L L N I G++
Sbjct: 115 SNLTSLK---CGKISQDTLDELYTLKRLEC-----PNVIPPYGVEQI------------- 153
Query: 141 CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL 200
+ G + N+ L SL I ITDSD+ + LT LK L IS K I L
Sbjct: 154 ---VSGSVQNITKYTSLTSLQIY---NITDSDIPSIGKLTGLKKLSISSKKFI-GKIEDL 206
Query: 201 KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL---------------SDDGC 245
+ +LT L + P+ +L L ++ C L DG
Sbjct: 207 IDVSQLTSLEISNAPLGPEFYYNLYLFPYLVFIGFTHCHLPISGVSAQTPLSQLSPSDGF 266
Query: 246 EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNL-TGLC--N 301
+ SL+ L L +E+T L L + NL ++L C + D L TG +
Sbjct: 267 IYLAGCNSLRYLYLNESEVTSYHLDVLARMDNLLGISLKGCPTLSDYSLTPFKTGPIRNS 326
Query: 302 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL----DA 357
L+ L +SDT V GL+ ++ L L +++S ++ L+ L+SLK L + +
Sbjct: 327 LEELNISDTMVTHIGLQIVARLKYLRVLDISRC----NGIKILSPLNSLKYLEVLRLSNV 382
Query: 358 RQITDTGLAAL-TSLTGLTHLDLFGARITDSGAAYLRSKF 396
R +DT A T L L + I DS + SKF
Sbjct: 383 RVNSDTLQDAFRTPPKYLQQLLVDAGPIDDSLLTVICSKF 422
>gi|149178243|ref|ZP_01856836.1| leucine-rich repeat domain protein [Planctomyces maris DSM 8797]
gi|148842892|gb|EDL57262.1| leucine-rich repeat domain protein [Planctomyces maris DSM 8797]
Length = 254
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 65/120 (54%), Gaps = 1/120 (0%)
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 315
+L +ITDE L L GL+ ++SLNL + GL L L L L L T+V +
Sbjct: 58 AFHLSDQKITDETLKTLAGLSKVDSLNLRGTEVTSAGLAQLQHLKALTHLHLEKTKVNDA 117
Query: 316 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT-DTGLAALTSLTGL 374
GL+HL L NLE +NL T I+D L +L+ L LK L + ++T GLA +TGL
Sbjct: 118 GLKHLQQLPNLEYLNLYGTEITDAGLSQLSSLKKLKRLYVWQTKVTRPAGLALQEQITGL 177
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 61/117 (52%)
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
+ +L I DE L L GL + L L T+V S+GL L L L ++L T ++D
Sbjct: 58 AFHLSDQKITDETLKTLAGLSKVDSLNLRGTEVTSAGLAQLQHLKALTHLHLEKTKVNDA 117
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRSKF 396
L+ L L +L+ LNL +ITD GL+ L+SL L L ++ ++T L+ +
Sbjct: 118 GLKHLQQLPNLEYLNLYGTEITDAGLSQLSSLKKLKRLYVWQTKVTRPAGLALQEQI 174
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 70/150 (46%), Gaps = 25/150 (16%)
Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
+ +S K+TD + L GL K+ LNL G VT+A L L L +L +L+L + +++D
Sbjct: 58 AFHLSDQKITDETLKTLAGLSKVDSLNLRGTEVTSAGLAQLQHLKALTHLHLEKTKVNDA 117
Query: 244 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 303
G L HL+ L NLE LNL I D GL L+ L LK
Sbjct: 118 G------------------------LKHLQQLPNLEYLNLYGTEITDAGLSQLSSLKKLK 153
Query: 304 CLELSDTQVG-SSGLRHLSGLTNLESINLS 332
L + T+V +GL +T LE I L
Sbjct: 154 RLYVWQTKVTRPAGLALQEQITGLEVIGLP 183
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 58/98 (59%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
ITD +K L+GL+ + SL + ++VT +G+A L+ L+ LT L+LE V A L L L
Sbjct: 66 ITDETLKTLAGLSKVDSLNLRGTEVTSAGLAQLQHLKALTHLHLEKTKVNDAGLKHLQQL 125
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265
+L YLNL +++D G + S + LK L + ++T
Sbjct: 126 PNLEYLNLYGTEITDAGLSQLSSLKKLKRLYVWQTKVT 163
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 84/180 (46%), Gaps = 20/180 (11%)
Query: 42 PGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEH 101
P +IA+ GS L +L+ +D HL D +I+D L+
Sbjct: 29 PATEQAKAKIIAAGGSVL---ELAQNDDRLEIAFHLSDQ------------KITDETLKT 73
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
L GLS + SL+ R +T+ G+ L L L LE+ GL +L+ L LE LN
Sbjct: 74 LAGLSKVDSLNLR-GTEVTSAGLAQLQHLKALTHLHLEKTKVNDAGLKHLQQLPNLEYLN 132
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVT-DSGIAYLKGLQKLTLLNL--EGCPVTA 218
+ + ITD+ + LS L LK L + +KVT +G+A + + L ++ L E PV A
Sbjct: 133 L-YGTEITDAGLSQLSSLKKLKRLYVWQTKVTRPAGLALQEQITGLEVIGLPEEPKPVAA 191
>gi|343416403|emb|CCD20380.1| leucine-rich repeat protein [Trypanosoma vivax Y486]
Length = 1256
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 109/354 (30%), Positives = 166/354 (46%), Gaps = 18/354 (5%)
Query: 32 ALQDLCLGQYPGVNDKWM-DVIASQGSSLLSVDLSGSDVTD-SGLIHLKDCSNLQSLDFN 89
LQ+LCL Q V+D ++ D+ + LS++ S + +TD S L ++ +L+ LD N
Sbjct: 656 TLQELCLRQL-SVDDAFLRDLTCHERLRRLSLN-SCTRITDVSPLARMR---SLEILDLN 710
Query: 90 FCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLV 149
C I G L L GL+ L L N A ++ L +L L CTRI +
Sbjct: 711 GCTGIVRG-LHVLCGLTTLQELCLANVNVDDA-FVRDLTCHERLRRLSLNSCTRI-TDVS 767
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL 209
L + LE LN+ C I + L GLT L+ L + V D+ + L ++L L
Sbjct: 768 PLARMRSLEMLNLNDCTGIVRG-LHELCGLTTLQELYLPKVYVDDAFLRDLTCHERLRRL 826
Query: 210 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
+L C + L+ + SL LNLN C G + + +L+ L L + D L
Sbjct: 827 SLNSCTRITD-VSPLARMRSLEMLNLNGCTGIVRGLHELCGLTTLQELYLRQMSVDDAFL 885
Query: 270 VHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 328
L L L+L+SC I D + L + +L+ L+L+D GL L GLT L+
Sbjct: 886 RDLTCHERLRRLSLNSCTRITD--VSPLARMRSLEMLDLNDCTGIVRGLHELCGLTTLQE 943
Query: 329 INLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFG 381
+ L+ + D LR L L+ L+L++ +ITD ++ L + L LDL G
Sbjct: 944 LCLANVNVDDAFLRDLTCHERLRELSLNSCTRITD--VSPLARMRSLEKLDLNG 995
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 107/354 (30%), Positives = 166/354 (46%), Gaps = 18/354 (5%)
Query: 32 ALQDLCLGQYPGVNDKWM-DVIASQGSSLLSVDLSGSDVTD-SGLIHLKDCSNLQSLDFN 89
LQ+LCL + V+D ++ D+ + LS++ S + +TD S L ++ +L+ LD N
Sbjct: 372 TLQELCLAEV-SVDDAFLRDLTCHERLRELSLN-SCTRITDVSPLARMR---SLEMLDLN 426
Query: 90 FCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLV 149
C I G L L GL+ L L R+ + A ++ L +L L CTRI +
Sbjct: 427 GCTGIVRG-LHELCGLTTLQELYLRQMSVDDAL-LRDLTCHERLRELSLNSCTRI-TDVS 483
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL 209
L + LE L++ C I + L GLT L+ L + V D+ + L ++L L
Sbjct: 484 PLARMRSLEMLDLNGCTGIVRG-LHELCGLTTLQELYLRQMSVDDALLRDLTCHERLREL 542
Query: 210 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
+L C + L+ + SL LNLN C G + +L+ L L + D L
Sbjct: 543 SLNSCTRITD-VSPLARMRSLEILNLNDCTGIVRGLHVLCGLTTLQKLCLANVNVDDAFL 601
Query: 270 VHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 328
L L L+L+SC I D + L + +L+ L+L+D GL L GLT L+
Sbjct: 602 RDLTCHERLRELSLNSCTRITD--VSPLARMRSLENLDLNDCTGIVRGLHVLCGLTTLQE 659
Query: 329 INLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFG 381
+ L + D LR L L+ L+L++ +ITD ++ L + L LDL G
Sbjct: 660 LCLRQLSVDDAFLRDLTCHERLRRLSLNSCTRITD--VSPLARMRSLEILDLNG 711
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 114/384 (29%), Positives = 178/384 (46%), Gaps = 42/384 (10%)
Query: 32 ALQDLCLGQYPGVNDKWM-DVIASQGSSLLSVDLSGSDVTD-SGLIHLKDCSNLQSLDFN 89
LQ+L L Q V+D ++ D+ + LS++ S + +TD S L ++ +L+ LD N
Sbjct: 869 TLQELYLRQM-SVDDAFLRDLTCHERLRRLSLN-SCTRITDVSPLARMR---SLEMLDLN 923
Query: 90 FCIQISDGGLEHLRGLSNLTSL---------SFRR-------------NNAITAQGMKAF 127
C I G L L GL+ L L +F R N+ +
Sbjct: 924 DCTGIVRG-LHELCGLTTLQELCLANVNVDDAFLRDLTCHERLRELSLNSCTRITDVSPL 982
Query: 128 AGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
A + +L KLDL CT I GL L GL L+ L ++ + + D+ ++ L+ L+ L +
Sbjct: 983 ARMRSLEKLDLNGCTGIVRGLHVLCGLTTLQELYLRQMS-VDDALLRDLTCHERLRRLSL 1041
Query: 188 -SCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 245
SC+++TD S +A ++ L+ ++L GC L L L +L L L + + D
Sbjct: 1042 NSCTRITDVSPLARMRSLEN---MDLNGCTGIVRGLHVLCGLTTLQELYLRQMSVDDAFL 1098
Query: 246 EKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 304
+ L+ L+L ITD + L + +LE L+L+ C GL L GL L+
Sbjct: 1099 RDLTCHERLRKLSLNSCTRITD--VSPLARMRSLEMLDLNGCTGIVRGLHVLCGLTTLQE 1156
Query: 305 LELSDTQVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNLDARQITDT 363
L L V + LR L+ L ++L S T I+D S LA + SL+ L+L+
Sbjct: 1157 LYLRQMCVDDAFLRDLTCHERLRRLSLNSCTRITDVS--PLARMRSLEMLDLNGCTGIVR 1214
Query: 364 GLAALTSLTGLTHLDLFGARITDS 387
GL L LT L L L+ + D+
Sbjct: 1215 GLHVLCGLTTLQELYLWQMCVDDA 1238
>gi|290997409|ref|XP_002681274.1| predicted protein [Naegleria gruberi]
gi|284094897|gb|EFC48530.1| predicted protein [Naegleria gruberi]
Length = 237
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 108/219 (49%), Gaps = 1/219 (0%)
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
L +T L +L+I + + D+ + + +++LT L+LE + S+S L +L YLN+
Sbjct: 2 LGRMTQLTTLEIGNNLIDDNMVKLISEMKQLTCLDLEINQIFNEGAKSISELRNLTYLNI 61
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
++D+G E ++ +L L + IT + + L NL LN+ IGDEG
Sbjct: 62 GNNPINDEGIESICQLDNLTDLTVSSLRITSKSAKFISKLNNLTFLNIAYNNIGDEGAKF 121
Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT-GISDGSLRKLAGLSSLKSLN 354
++ + +LK L++S + G + +S L L + +S GI D R ++ + L L
Sbjct: 122 ISEIKSLKILDISLNGISPIGAKSISELDQLTVLYISQNFGIGDEGARMISEMKQLNELY 181
Query: 355 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
+ I + G +++ + LTHLD+ I G +R
Sbjct: 182 IQDCFIGNAGAISISRMDKLTHLDISENEIQIEGETVIR 220
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 113/253 (44%), Gaps = 36/253 (14%)
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW 164
++ LT+L NN I +K + + L LDLE
Sbjct: 5 MTQLTTLEIG-NNLIDDNMVKLISEMKQLTCLDLE------------------------- 38
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
N I + K +S L NL L I + + D GI + L LT L + +T+ +
Sbjct: 39 INQIFNEGAKSISELRNLTYLNIGNNPINDEGIESICQLDNLTDLTVSSLRITSKSAKFI 98
Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL- 283
S L +L +LN+ + D+G + S+I SLK+L++ N I+ + K ++ L+ L +
Sbjct: 99 SKLNNLTFLNIAYNNIGDEGAKFISEIKSLKILDISLNGISP---IGAKSISELDQLTVL 155
Query: 284 ---DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS--- 337
+ GIGDEG ++ + L L + D +G++G +S + L +++S I
Sbjct: 156 YISQNFGIGDEGARMISEMKQLNELYIQDCFIGNAGAISISRMDKLTHLDISENEIQIEG 215
Query: 338 DGSLRKLAGLSSL 350
+ +R + LS L
Sbjct: 216 ETVIRDMKHLSYL 228
>gi|12581504|gb|AAG59625.1| GU1 [Trypanosoma brucei]
gi|261333153|emb|CBH16148.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
DAL972]
Length = 846
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 90/336 (26%), Positives = 163/336 (48%), Gaps = 26/336 (7%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L+ +D + + D+ + + C L+ L F +C ++D ++ L GL NL +L N
Sbjct: 488 LVKLDTERTGIMDANVCQVVACKKLEFLSFRYCHLLTD--VKCLEGLRNLKTLDLAGTN- 544
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
+T +G+ + ++L +D+ C I +L+ L L +L + + +D+ L+G
Sbjct: 545 VTNEGISSLPKCVSLEYVDVSECCLI----THLEFLRPLPNLQQVVADQMNLTDIGGLTG 600
Query: 179 LTNLKSLQISCSK----VTDSGIAYLK--GLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
+L+ + ++ SK V + + YL+ L+K T+ N A L++ SL +
Sbjct: 601 APSLRRVTLNESKRLGTVGEVRLPYLQELSLRKSTISN-------AGIRSLLASCRSLQH 653
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
L++ C S S++ +L+ L L +T E + H+ NL L + C D
Sbjct: 654 LDMQHCH-SVTELSALSQLPNLRELLLRNIRVTGEFMTHIASCVNLRKLQMTECA--DIT 710
Query: 293 LVN-LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 351
VN L+ L +L+ ++LS T V + G++ LS L +NLS ++ L L L+
Sbjct: 711 DVNCLSALQSLEDIDLSRTSVTTEGIKGLSKCYALRKLNLSECRYVT-NVNCLGKLPFLR 769
Query: 352 SLNLDARQITDTGLAALTSLTGLTHLDLFG-ARITD 386
L+L+ +TD G+A L++ L L L +RIT+
Sbjct: 770 ELHLEKTNVTDKGIAGLSNCIQLETLALTKCSRITN 805
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 105/432 (24%), Positives = 186/432 (43%), Gaps = 79/432 (18%)
Query: 27 AFRDC-ALQDLCLGQYPGVND-KWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQ 84
+F C LQ L L V+D +W+ + + L ++DLS ++V L L+ C L
Sbjct: 364 SFVHCRQLQQLKLSCCRRVSDVRWLAAL----TCLRTLDLSHTNVRSRWLESLRACRYLV 419
Query: 85 SLDFNFC---IQIS----------------DGGLEHLRGLSNLTSLSFRR-NNAITAQGM 124
L+ +C +++S D G ++L + L+F + + + +
Sbjct: 420 ELNVAYCRDVVEVSFLSELRLLKHLDLSGTDIGEQNLDPIGQCEGLTFLLLKDCSSVKDL 479
Query: 125 KAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
L LVKLD ER + + + KLE L+ ++C+ +TD +K L GL NLK+
Sbjct: 480 HFLETLRELVKLDTERTGIMDANVCQVVACKKLEFLSFRYCHLLTD--VKCLEGLRNLKT 537
Query: 185 LQISCSKVTDSGIAYLKGLQKLTLLNL-EGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
L ++ + VT+ GI+ L L +++ E C +T L+ L L +L + ++ L+D
Sbjct: 538 LDLAGTNVTNEGISSLPKCVSLEYVDVSECCLITH--LEFLRPLPNLQQVVADQMNLTDI 595
Query: 244 G---------------CEKFSKIGSLK-------------VLNLGFNEITDEC------- 268
G ++ +G ++ + N G + C
Sbjct: 596 GGLTGAPSLRRVTLNESKRLGTVGEVRLPYLQELSLRKSTISNAGIRSLLASCRSLQHLD 655
Query: 269 ---------LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 319
L L L NL L L + + E + ++ NL+ L++++ + +
Sbjct: 656 MQHCHSVTELSALSQLPNLRELLLRNIRVTGEFMTHIASCVNLRKLQMTEC-ADITDVNC 714
Query: 320 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLD 378
LS L +LE I+LS T ++ ++ L+ +L+ LNL + R +T+ L L L L
Sbjct: 715 LSALQSLEDIDLSRTSVTTEGIKGLSKCYALRKLNLSECRYVTNVN--CLGKLPFLRELH 772
Query: 379 LFGARITDSGAA 390
L +TD G A
Sbjct: 773 LEKTNVTDKGIA 784
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 100/376 (26%), Positives = 179/376 (47%), Gaps = 49/376 (13%)
Query: 49 MDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNL 108
++ I+S GS L+ +DL + V D+G C LQ L + C ++SD + L L+ L
Sbjct: 338 VEFISSLGS-LVELDLRDNWVGDAGCASFVHCRQLQQLKLSCCRRVSD--VRWLAALTCL 394
Query: 109 TSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCI 168
+L N + ++ +++ LV+L++ C + + L L L+ L++ + I
Sbjct: 395 RTLDLSHTN-VRSRWLESLRACRYLVELNVAYCRDV-VEVSFLSELRLLKHLDLSGTD-I 451
Query: 169 TDSDMKPL---SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
+ ++ P+ GLT L L CS V D + +L+ L++L L+ E + A + +
Sbjct: 452 GEQNLDPIGQCEGLTFL--LLKDCSSVKD--LHFLETLRELVKLDTERTGIMDANVCQVV 507
Query: 226 ALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGFNEITDE----------------- 267
A L +L+ C L+D C + +LK L+L +T+E
Sbjct: 508 ACKKLEFLSFRYCHLLTDVKC--LEGLRNLKTLDLAGTNVTNEGISSLPKCVSLEYVDVS 565
Query: 268 --CLV----HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHL 320
CL+ L+ L NL+ + D + D G LTG +L+ + L++++ +G+ G L
Sbjct: 566 ECCLITHLEFLRPLPNLQQVVADQMNLTDIG--GLTGAPSLRRVTLNESKRLGTVGEVRL 623
Query: 321 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSL-NLDARQI-TDTGLAALTSLTGLTHLD 378
L+ ++L + IS+ +R L L+S +SL +LD + + T L+AL+ L L L
Sbjct: 624 P---YLQELSLRKSTISNAGIRSL--LASCRSLQHLDMQHCHSVTELSALSQLPNLRELL 678
Query: 379 LFGARITDSGAAYLRS 394
L R+T ++ S
Sbjct: 679 LRNIRVTGEFMTHIAS 694
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 82/320 (25%), Positives = 133/320 (41%), Gaps = 58/320 (18%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L S+ L + +++ + + +C+NL+ + + C + LE L LT LS N
Sbjct: 206 LRSLTLFATPLSNQIMSYFCECTNLERVVVDSCCGLV--SLECFAALQRLTHLSVL-NCT 262
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
IT +G+ + +L + L+ C MKL SLN L
Sbjct: 263 ITDEGLPPISKCFSLQYVMLDNC-------------MKLRSLNC-------------LGS 296
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
L NL++L +S +++ + G+ L+ L+ L +L A ++ +S+LGSL L+L
Sbjct: 297 LRNLRTLIVSRNRIPEEGVQGLRKLRDLEVLRFSVFNRPTA-VEFISSLGSLVELDLRDN 355
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
+ D GC F VH + L L+ SC + L
Sbjct: 356 WVGDAGCASF---------------------VHCRQLQQLKL----SCCRRVSDVRWLAA 390
Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA 357
L L+ L+LS T V S L L L +N+++ + + S L+ L LK L+L
Sbjct: 391 LTCLRTLDLSHTNVRSRWLESLRACRYLVELNVAYCRDVVEVSF--LSELRLLKHLDLSG 448
Query: 358 RQITDTGLAALTSLTGLTHL 377
I + L + GLT L
Sbjct: 449 TDIGEQNLDPIGQCEGLTFL 468
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 84/342 (24%), Positives = 143/342 (41%), Gaps = 54/342 (15%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQ----------------------ISDGGLEHLRGLS 106
+TD GL + C +LQ + + C++ I + G++ LR L
Sbjct: 263 ITDEGLPPISKCFSLQYVMLDNCMKLRSLNCLGSLRNLRTLIVSRNRIPEEGVQGLRKLR 322
Query: 107 NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCN 166
+L L F N TA ++ + L +LV+LDL G + +L+ L + C
Sbjct: 323 DLEVLRFSVFNRPTA--VEFISSLGSLVELDLRDNWVGDAGCASFVHCRQLQQLKLSCCR 380
Query: 167 CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 226
+ SD++ L+ LT L++L +S + V + L+ + L LN+ C + LS
Sbjct: 381 RV--SDVRWLAALTCLRTLDLSHTNVRSRWLESLRACRYLVELNVAYCRDVVE-VSFLSE 437
Query: 227 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG-FNEITDECLVHLKGLTNLESLNLDS 285
L L +L+L+ + + + + L L L + + D L L+ L L L+ +
Sbjct: 438 LRLLKHLDLSGTDIGEQNLDPIGQCEGLTFLLLKDCSSVKD--LHFLETLRELVKLDTER 495
Query: 286 CGIGDEGLVN-----------------------LTGLCNLKCLELSDTQVGSSGLRHLSG 322
GI D + L GL NLK L+L+ T V + G+ L
Sbjct: 496 TGIMDANVCQVVACKKLEFLSFRYCHLLTDVKCLEGLRNLKTLDLAGTNVTNEGISSLPK 555
Query: 323 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 364
+LE +++S + L L L +L+ + D +TD G
Sbjct: 556 CVSLEYVDVSECCLI-THLEFLRPLPNLQQVVADQMNLTDIG 596
>gi|422408524|ref|ZP_16485485.1| internalin A, partial [Listeria monocytogenes FSL F2-208]
gi|313610685|gb|EFR85741.1| internalin A [Listeria monocytogenes FSL F2-208]
Length = 439
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 95/295 (32%), Positives = 150/295 (50%), Gaps = 29/295 (9%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
QI+D + L L+NLT L+ NN IT + A L NL +L++ T + L
Sbjct: 6 QITD--ISPLANLTNLTGLTLF-NNQIT--DIDALKNLTNLNRLEITGNTI--SDISVLS 58
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNL 211
GL L+ L + N +TD +KPL+ LT L+ L IS +KV+D S +A L L++L N
Sbjct: 59 GLTSLQQL--SFGNQVTD--LKPLANLTTLERLDISSNKVSDISVLAKLTNLERLIATNN 114
Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 271
+ +T L L +L L+LN QL D G + + +L L++ N+I++ L
Sbjct: 115 QISDITP-----LGILTNLDELSLNGNQLKDIGT--LASLTNLTSLDVANNQISN--LAP 165
Query: 272 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 331
L GLT L L L I + + + GL L LEL + Q+ + +S L NL + L
Sbjct: 166 LSGLTKLTELELGYNQISN--ISPIEGLTALTSLELHENQL--EDISPISNLKNLTYLAL 221
Query: 332 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
F ISD + ++ L+ L+ L +++D +++L +LT + L +I+D
Sbjct: 222 YFNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAAHNQISD 272
>gi|71748370|ref|XP_823240.1| hypothetical protein [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|70832908|gb|EAN78412.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 846
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 90/336 (26%), Positives = 163/336 (48%), Gaps = 26/336 (7%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L+ +D + + D+ + + C L+ L F +C ++D ++ L GL NL +L N
Sbjct: 488 LVKLDTERTGIMDANVCQVVACKKLEFLSFRYCHLLTD--VKCLEGLRNLKTLDLAGTN- 544
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
+T +G+ + ++L +D+ C I +L+ L L +L + + +D+ L+G
Sbjct: 545 VTNEGISSLPKCVSLEYVDVSECCLI----THLEFLRPLPNLQQVVADQMNLTDIGGLTG 600
Query: 179 LTNLKSLQISCSK----VTDSGIAYLK--GLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
+L+ + ++ SK V + + YL+ L+K T+ N A L++ SL +
Sbjct: 601 APSLRRVTLNESKRLGTVGEVRLPYLQELSLRKSTISN-------AGIRSLLASCRSLQH 653
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
L++ C S S++ +L+ L L +T E + H+ NL L + C D
Sbjct: 654 LDMQHCH-SVTELSALSQLPNLRELLLRNIRVTGEFMTHIASCVNLRKLQMTECA--DIT 710
Query: 293 LVN-LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 351
VN L+ L +L+ ++LS T V + G++ LS L +NLS ++ L L L+
Sbjct: 711 DVNCLSALQSLEDIDLSRTSVTTEGIKGLSKCYALRKLNLSECRYVT-NVNCLGKLPFLR 769
Query: 352 SLNLDARQITDTGLAALTSLTGLTHLDLFG-ARITD 386
L+L+ +TD G+A L++ L L L +RIT+
Sbjct: 770 ELHLEKTNVTDKGIAGLSNCIQLETLALTKCSRITN 805
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 103/431 (23%), Positives = 184/431 (42%), Gaps = 77/431 (17%)
Query: 27 AFRDC-ALQDLCLGQYPGVND-KWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQ 84
+F C LQ L L V+D +W+ + + L ++DLS ++V L L+ C L
Sbjct: 364 SFVHCRQLQQLKLSCCRRVSDVRWLAAL----TCLRTLDLSHTNVRSRWLESLRACRYLV 419
Query: 85 SLDFNFC---IQIS----------------DGGLEHLRGLSNLTSLSFRR-NNAITAQGM 124
L+ +C +++S D G ++L + L+F + + + +
Sbjct: 420 ELNVAYCRDVVEVSFLSELRLLKHLDLSGTDIGEQNLDPIGRCEGLTFLLLKDCSSVKDL 479
Query: 125 KAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
L LVKLD ER + + + KLE L+ ++C+ +TD +K L GL NLK+
Sbjct: 480 HFLETLRELVKLDTERTGIMDANVCQVVACKKLEFLSFRYCHLLTD--VKCLEGLRNLKT 537
Query: 185 LQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 244
L ++ + VT+ GI+ L L +++ C + L+ L L +L + ++ L+D G
Sbjct: 538 LDLAGTNVTNEGISSLPKCVSLEYVDVSECCLITH-LEFLRPLPNLQQVVADQMNLTDIG 596
Query: 245 ---------------CEKFSKIGSLK-------------VLNLGFNEITDEC-------- 268
++ +G ++ + N G + C
Sbjct: 597 GLTGAPSLRRVTLNESKRLGTVGEVRLPYLQELSLRKSTISNAGIRSLLASCRSLQHLDM 656
Query: 269 --------LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 320
L L L NL L L + + E + ++ NL+ L++++ + + L
Sbjct: 657 QHCHSVTELSALSQLPNLRELLLRNIRVTGEFMTHIASCVNLRKLQMTEC-ADITDVNCL 715
Query: 321 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDL 379
S L +LE I+LS T ++ ++ L+ +L+ LNL + R +T+ L L L L L
Sbjct: 716 SALQSLEDIDLSRTSVTTEGIKGLSKCYALRKLNLSECRYVTNVN--CLGKLPFLRELHL 773
Query: 380 FGARITDSGAA 390
+TD G A
Sbjct: 774 EKTNVTDKGIA 784
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 100/376 (26%), Positives = 179/376 (47%), Gaps = 49/376 (13%)
Query: 49 MDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNL 108
++ I+S GS L+ +DL + V D+G C LQ L + C ++SD + L L+ L
Sbjct: 338 VEFISSLGS-LVELDLRDNWVGDAGCASFVHCRQLQQLKLSCCRRVSD--VRWLAALTCL 394
Query: 109 TSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCI 168
+L N + ++ +++ LV+L++ C + + L L L+ L++ + I
Sbjct: 395 RTLDLSHTN-VRSRWLESLRACRYLVELNVAYCRDV-VEVSFLSELRLLKHLDLSGTD-I 451
Query: 169 TDSDMKPL---SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
+ ++ P+ GLT L L CS V D + +L+ L++L L+ E + A + +
Sbjct: 452 GEQNLDPIGRCEGLTFL--LLKDCSSVKD--LHFLETLRELVKLDTERTGIMDANVCQVV 507
Query: 226 ALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGFNEITDE----------------- 267
A L +L+ C L+D C + +LK L+L +T+E
Sbjct: 508 ACKKLEFLSFRYCHLLTDVKC--LEGLRNLKTLDLAGTNVTNEGISSLPKCVSLEYVDVS 565
Query: 268 --CLV----HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHL 320
CL+ L+ L NL+ + D + D G LTG +L+ + L++++ +G+ G L
Sbjct: 566 ECCLITHLEFLRPLPNLQQVVADQMNLTDIG--GLTGAPSLRRVTLNESKRLGTVGEVRL 623
Query: 321 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSL-NLDARQI-TDTGLAALTSLTGLTHLD 378
L+ ++L + IS+ +R L L+S +SL +LD + + T L+AL+ L L L
Sbjct: 624 P---YLQELSLRKSTISNAGIRSL--LASCRSLQHLDMQHCHSVTELSALSQLPNLRELL 678
Query: 379 LFGARITDSGAAYLRS 394
L R+T ++ S
Sbjct: 679 LRNIRVTGEFMTHIAS 694
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 82/320 (25%), Positives = 133/320 (41%), Gaps = 58/320 (18%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L S+ L + +++ + + +C+NL+ + + C + LE L LT LS N
Sbjct: 206 LRSLTLFATPLSNQIMSYFCECTNLERVVVDSCCGLV--SLECFAALQRLTHLSVL-NCT 262
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
IT +G+ + +L + L+ C MKL SLN L
Sbjct: 263 ITDEGLPPISKCFSLQYVMLDNC-------------MKLRSLNC-------------LGS 296
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
L NL++L +S +++ + G+ L+ L+ L +L A ++ +S+LGSL L+L
Sbjct: 297 LRNLRTLIVSRNRIPEEGVQGLRKLRDLEVLRFSVFNRPTA-VEFISSLGSLVELDLRDN 355
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
+ D GC F VH + L L+ SC + L
Sbjct: 356 WVGDAGCASF---------------------VHCRQLQQLKL----SCCRRVSDVRWLAA 390
Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA 357
L L+ L+LS T V S L L L +N+++ + + S L+ L LK L+L
Sbjct: 391 LTCLRTLDLSHTNVRSRWLESLRACRYLVELNVAYCRDVVEVSF--LSELRLLKHLDLSG 448
Query: 358 RQITDTGLAALTSLTGLTHL 377
I + L + GLT L
Sbjct: 449 TDIGEQNLDPIGRCEGLTFL 468
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 84/342 (24%), Positives = 143/342 (41%), Gaps = 54/342 (15%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQ----------------------ISDGGLEHLRGLS 106
+TD GL + C +LQ + + C++ I + G++ LR L
Sbjct: 263 ITDEGLPPISKCFSLQYVMLDNCMKLRSLNCLGSLRNLRTLIVSRNRIPEEGVQGLRKLR 322
Query: 107 NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCN 166
+L L F N TA ++ + L +LV+LDL G + +L+ L + C
Sbjct: 323 DLEVLRFSVFNRPTA--VEFISSLGSLVELDLRDNWVGDAGCASFVHCRQLQQLKLSCCR 380
Query: 167 CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 226
+ SD++ L+ LT L++L +S + V + L+ + L LN+ C + LS
Sbjct: 381 RV--SDVRWLAALTCLRTLDLSHTNVRSRWLESLRACRYLVELNVAYCRDVVE-VSFLSE 437
Query: 227 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG-FNEITDECLVHLKGLTNLESLNLDS 285
L L +L+L+ + + + + L L L + + D L L+ L L L+ +
Sbjct: 438 LRLLKHLDLSGTDIGEQNLDPIGRCEGLTFLLLKDCSSVKD--LHFLETLRELVKLDTER 495
Query: 286 CGIGDEGLVN-----------------------LTGLCNLKCLELSDTQVGSSGLRHLSG 322
GI D + L GL NLK L+L+ T V + G+ L
Sbjct: 496 TGIMDANVCQVVACKKLEFLSFRYCHLLTDVKCLEGLRNLKTLDLAGTNVTNEGISSLPK 555
Query: 323 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 364
+LE +++S + L L L +L+ + D +TD G
Sbjct: 556 CVSLEYVDVSECCLI-THLEFLRPLPNLQQVVADQMNLTDIG 596
>gi|84043404|ref|XP_951492.1| hypothetical protein [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|33348240|gb|AAQ15567.1| leucine-rich repeat protein (LRRP), putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
gi|62358736|gb|AAX79191.1| leucine-rich repeat protein (LRRP), putative [Trypanosoma brucei]
Length = 1394
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 110/413 (26%), Positives = 177/413 (42%), Gaps = 78/413 (18%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC 91
AL +L L G+N W + Q L LS + +TD + H C NL +LD +FC
Sbjct: 556 ALNELNLSNCFGINAGWEAIEKLQ--QLHVAILSNTHITDRNISHFSKCKNLVTLDLSFC 613
Query: 92 IQISDGGLEHLRGLSNLTSL-------------------SFRRNNAITAQGMKAFAGLI- 131
++ D + LSN+T+L R + +G++ +I
Sbjct: 614 NKLLD-----VTALSNITTLEELNLDSCSNIRKGLSVLGELPRLCVLNIKGVQLEDSVIV 668
Query: 132 ------NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
+LVK+ L+ C G + L L+ LE LN+ +C+ +T S M L L L+ L
Sbjct: 669 SLGNGGSLVKVSLDDCAGF-GDVTPLSNLVTLEELNLHYCDKVT-SGMGTLGRLPQLRVL 726
Query: 186 QI--------------------------SCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTA 218
+ C K+T S IA L L++L + N C VT+
Sbjct: 727 DLGRTQVDNNSLENICTSSIPLVSLNLSHCKKITSISSIASLTALEELNIDN--SCNVTS 784
Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTN 277
+ L L L+ +++D+ S+ SL LNL F +ITD + L +T
Sbjct: 785 G-WNVFGTLHQLRVATLSNTRINDENIRYVSECKSLNTLNLAFCKDITD--VTALSKITM 841
Query: 278 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES---INLSFT 334
LE LNLD C +G+ L L L + + +G S + S L N +S +NL +
Sbjct: 842 LEELNLDCCPNIRKGIETLGTLPKAGILSMKECYMGDSDAQQCSILWNSKSLVKLNLERS 901
Query: 335 GISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARITD 386
+ S++ L+ +++L+ L L AR++ + S + L L + + TD
Sbjct: 902 -MGFISVKALSNIATLEELVLGHARKV-----CCIPSFSCLPRLRVLNLKYTD 948
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 92/349 (26%), Positives = 149/349 (42%), Gaps = 58/349 (16%)
Query: 94 ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
I + HL + L L+ +T ++ + L NL L+L + +
Sbjct: 189 IDNNDARHLFNIGTLEELAITDTMQLT--NIRGISRLTNLKCLELNSTDIDDSCIGEISA 246
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLE 212
KL L++ CN ITD+ P+S L+ L+ L + SC +T GI L L +L +L+L
Sbjct: 247 CAKLSKLSVSECNNITDA--TPISQLSALEELNLNSCYHIT-KGIGTLGMLLRLRILDLS 303
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRC-QLSD---------------DGCEKFSK------ 250
G PV CL L GSL LN++ C QL+D +GC + ++
Sbjct: 304 GVPVEDNCLKDLCDCGSLERLNISYCIQLTDINPLSNATAIEELNLNGCRRITRGIGVVW 363
Query: 251 -IGSLKVLNLGFNEIT------------------DEC-----LVHLKGLTNLESLNLDSC 286
+ L+VL++ ++ D C + L + LE LN+ C
Sbjct: 364 ALPKLRVLHMKDVHLSEPSLDSVGTGGPLVKVSLDNCAGFGDMTLLSSIVTLEELNIQKC 423
Query: 287 GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLA 345
G+ +L L L+ L + + + S + +L +N+ S TG+ D + LA
Sbjct: 424 ADIISGVGSLGTLPYLRVLNIKEAHISSLDFTGIGASKSLLQLNMESITGLID--VEALA 481
Query: 346 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRS 394
+ +L+ L+L D G+ L +L L LDL G T++ LRS
Sbjct: 482 NILTLEKLSLHGCTGIDAGIGCLGNLPQLKMLDLSG---TNTDNESLRS 527
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 95/199 (47%), Gaps = 8/199 (4%)
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAY-LKGLQKLTL 208
++ L LE LN+ C IT S K LS L L+ L + ++VT Y + + L
Sbjct: 1192 HISNLTALEELNLGGCYYIT-SGWKALSELPRLRVLNLESTRVTTRYDGYYISRCKSLVT 1250
Query: 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 268
LNLE C +T A ++ + +L L++ +C+ G + L++LNL + ITDE
Sbjct: 1251 LNLELCDMTDA--SYIANIKTLEELHIGKCKELTQGFSALFTLPRLRILNLICSLITDED 1308
Query: 269 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL---SDTQVGSSGLRHLSGLTN 325
L ++ +E LNL C + + L + ++K L L D + + G R L L
Sbjct: 1309 LREIQPPHTIEELNLSYC-VELNDITPLGRIKSIKKLHLRQSHDARRSTEGFRSLLELPC 1367
Query: 326 LESINLSFTGISDGSLRKL 344
L ++L +S LR+L
Sbjct: 1368 LSWVDLKNASVSSDILREL 1386
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 94/387 (24%), Positives = 154/387 (39%), Gaps = 96/387 (24%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISD-------GGLEHL---------RGL 105
+DLSG V D+ L L DC +L+ L+ ++CIQ++D +E L RG+
Sbjct: 300 LDLSGVPVEDNCLKDLCDCGSLERLNISYCIQLTDINPLSNATAIEELNLNGCRRITRGI 359
Query: 106 SNLTSLSFRR----------------------------NNAITAQGMKAFAGLINLVKLD 137
+ +L R +N M + ++ L +L+
Sbjct: 360 GVVWALPKLRVLHMKDVHLSEPSLDSVGTGGPLVKVSLDNCAGFGDMTLLSSIVTLEELN 419
Query: 138 LERCTRIHGGLVNLKGLMKLESLNIKWCNC-------------ITDSDMKPLSGLTNLKS 184
+++C I G+ +L L L LNIK + + +M+ ++GL ++++
Sbjct: 420 IQKCADIISGVGSLGTLPYLRVLNIKEAHISSLDFTGIGASKSLLQLNMESITGLIDVEA 479
Query: 185 LQ--ISCSKVT-------DSGIAYLKGLQKLTLLNLEGCPVTAACLDSL----------- 224
L ++ K++ D+GI L L +L +L+L G L SL
Sbjct: 480 LANILTLEKLSLHGCTGIDAGIGCLGNLPQLKMLDLSGTNTDNESLRSLCLSQTVVSLNL 539
Query: 225 ------------SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
S+L +L LNL+ C + G E K+ L V L ITD + H
Sbjct: 540 SHCWKMTNVSHISSLEALNELNLSNCFGINAGWEAIEKLQQLHVAILSNTHITDRNISHF 599
Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE---LSDTQVGSSGLRHLSGLTNLESI 329
NL +L+L C L+++T L N+ LE L GL L L L +
Sbjct: 600 SKCKNLVTLDLSFCN----KLLDVTALSNITTLEELNLDSCSNIRKGLSVLGELPRLCVL 655
Query: 330 NLSFTGISDGSLRKLAGLSSLKSLNLD 356
N+ + D + L SL ++LD
Sbjct: 656 NIKGVQLEDSVIVSLGNGGSLVKVSLD 682
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 90/376 (23%), Positives = 154/376 (40%), Gaps = 62/376 (16%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL----------------RGL 105
++L +D D ++ + +LQSL+ + C ++D + +G
Sbjct: 942 LNLKYTDFNDDVTKNISESKSLQSLNLSHCKWVTDISVLSSLLALEELNVNCCNGIRKGW 1001
Query: 106 SNLTSLSFRR-----NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 160
+L L R + ITA+ + + LVKL RC ++ V + + LE L
Sbjct: 1002 ESLGKLPLLRVAILSDTNITAKDIACLSSCKTLVKLKFFRCEKLSDVTV-VYEIQSLEEL 1060
Query: 161 NIKWCNCITDSDMKPLSGL------TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 214
++ C+ +K L+ L L + S ++ I K L +L + E
Sbjct: 1061 IVRSCS----DGLKGLNALGTLPRLRFLLLRNVRGSDISVESIGTSKSLVRLHIEMREDL 1116
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL----- 269
T LS + SL L+L C + G K+ LK L+LG ++I++ L
Sbjct: 1117 TDTTP----LSNITSLEELSLRECGDNLGGVGTLEKLPRLKSLDLGLSDISNSTLNYIFL 1172
Query: 270 ------------------VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 311
H+ LT LE LNL C G L+ L L+ L L T+
Sbjct: 1173 SRSITSLNLDSSWELTDISHISNLTALEELNLGGCYYITSGWKALSELPRLRVLNLESTR 1232
Query: 312 VGSS-GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 370
V + ++S +L ++NL ++D S +A + +L+ L++ + G +AL +
Sbjct: 1233 VTTRYDGYYISRCKSLVTLNLELCDMTDASY--IANIKTLEELHIGKCKELTQGFSALFT 1290
Query: 371 LTGLTHLDLFGARITD 386
L L L+L + ITD
Sbjct: 1291 LPRLRILNLICSLITD 1306
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 108/231 (46%), Gaps = 9/231 (3%)
Query: 168 ITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 226
IT D+ LS L L+ C K++D + Y +Q L L + C L++L
Sbjct: 1020 ITAKDIACLSSCKTLVKLKFFRCEKLSDVTVVY--EIQSLEELIVRSCSDGLKGLNALGT 1077
Query: 227 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE-ITDECLVHLKGLTNLESLNLDS 285
L L +L L + SD E SL L++ E +TD L +T+LE L+L
Sbjct: 1078 LPRLRFLLLRNVRGSDISVESIGTSKSLVRLHIEMREDLTDT--TPLSNITSLEELSLRE 1135
Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKL 344
CG G+ L L LK L+L + + +S L ++ ++ S+NL S ++D + +
Sbjct: 1136 CGDNLGGVGTLEKLPRLKSLDLGLSDISNSTLNYIFLSRSITSLNLDSSWELTD--ISHI 1193
Query: 345 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRSK 395
+ L++L+ LNL +G AL+ L L L+L R+T Y S+
Sbjct: 1194 SNLTALEELNLGGCYYITSGWKALSELPRLRVLNLESTRVTTRYDGYYISR 1244
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 88/185 (47%), Gaps = 12/185 (6%)
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
L L LKSL + S +++S + Y+ + +T LNL+ + +S L +L LNL
Sbjct: 1146 LEKLPRLKSLDLGLSDISNSTLNYIFLSRSITSLNLDS-SWELTDISHISNLTALEELNL 1204
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL-VHLKGLTNLESLNLDSCGIGDEGLV 294
C G + S++ L+VLNL +T ++ +L +LNL+ C + D +
Sbjct: 1205 GGCYYITSGWKALSELPRLRVLNLESTRVTTRYDGYYISRCKSLVTLNLELCDMTDASYI 1264
Query: 295 -NLTGLCNL---KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 350
N+ L L KC EL+ G L L L +NL + I+D LR++ ++
Sbjct: 1265 ANIKTLEELHIGKCKELTQ------GFSALFTLPRLRILNLICSLITDEDLREIQPPHTI 1318
Query: 351 KSLNL 355
+ LNL
Sbjct: 1319 EELNL 1323
Score = 41.6 bits (96), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 53/228 (23%), Positives = 92/228 (40%), Gaps = 61/228 (26%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
LS + + D + ++ +C +L +L+ FC I+D
Sbjct: 800 LSNTRINDENIRYVSECKSLNTLNLAFCKDITD--------------------------- 832
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
+ A + + L +L+L+ C I G+ L L K L++K C + DSD + S L N K
Sbjct: 833 VTALSKITMLEELNLDCCPNIRKGIETLGTLPKAGILSMKECY-MGDSDAQQCSILWNSK 891
Query: 184 SL-----QISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
SL + S ++ ++ + L++L L G C+ S
Sbjct: 892 SLVKLNLERSMGFISVKALSNIATLEELVL----GHARKVCCIPS--------------- 932
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 286
FS + L+VLNL + + D+ ++ +L+SLNL C
Sbjct: 933 ---------FSCLPRLRVLNLKYTDFNDDVTKNISESKSLQSLNLSHC 971
Score = 39.7 bits (91), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 67/139 (48%), Gaps = 12/139 (8%)
Query: 254 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE-GLVNLTG---LCNLKCLELSD 309
LK L L N I + HL + LE L I D L N+ G L NLKCLEL+
Sbjct: 179 LKRLCLRSNNIDNNDARHLFNIGTLEEL-----AITDTMQLTNIRGISRLTNLKCLELNS 233
Query: 310 TQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 368
T + S + +S L +++S I+D + ++ LS+L+ LNL++ G+ L
Sbjct: 234 TDIDDSCIGEISACAKLSKLSVSECNNITDAT--PISQLSALEELNLNSCYHITKGIGTL 291
Query: 369 TSLTGLTHLDLFGARITDS 387
L L LDL G + D+
Sbjct: 292 GMLLRLRILDLSGVPVEDN 310
>gi|290993851|ref|XP_002679546.1| LRR_RI domain-containing protein [Naegleria gruberi]
gi|284093163|gb|EFC46802.1| LRR_RI domain-containing protein [Naegleria gruberi]
Length = 385
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 108/223 (48%), Gaps = 12/223 (5%)
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN-----LEGCPVTAACLDSLSALGSLFYL 233
L L L IS +++ G + L++LT L LEG + +S L L L
Sbjct: 86 LQQLTRLVISWNRIGIEGAKAISQLKQLTELEINQIGLEGTKI-------ISELNQLTSL 138
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
N+ ++ G + S++ L L++G N++ E + +++ L L +L++ + IG G
Sbjct: 139 NIANNKMGKQGAKYISEMKQLTKLDIGTNQLGVEGVQYIRKLDKLTALSVFNNVIGFRGA 198
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
+ L + L L +S +G G + +S L NL +NLSF IS + ++ L L L
Sbjct: 199 MLLRKMTQLTELNISTNAIGDVGAKFVSDLPNLAILNLSFNSISYVGAQFISKLPKLTEL 258
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRSKF 396
N++ + + G+ ++ + LT+L L RI + G ++ K
Sbjct: 259 NMNQNDLGNEGVKFISGIISLTNLSLQTTRIDEHGVKFISEKL 301
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 83/304 (27%), Positives = 131/304 (43%), Gaps = 7/304 (2%)
Query: 55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
Q L + +S + + G + L L+ N QI G + + L+ LTSL+
Sbjct: 85 QLQQLTRLVISWNRIGIEGAKAISQLKQLTELEIN---QIGLEGTKIISELNQLTSLNIA 141
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
NN + QG K + + L KLD+ G+ ++ L KL +L++ + N I
Sbjct: 142 -NNKMGKQGAKYISEMKQLTKLDIGTNQLGVEGVQYIRKLDKLTALSV-FNNVIGFRGAM 199
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
L +T L L IS + + D G ++ L L +LNL ++ +S L L LN
Sbjct: 200 LLRKMTQLTELNISTNAIGDVGAKFVSDLPNLAILNLSFNSISYVGAQFISKLPKLTELN 259
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL-KGLTNLESLNLDSCGIGDEGL 293
+N+ L ++G + S I SL L+L I + + + + L L L L IGD G
Sbjct: 260 MNQNDLGNEGVKFISGIISLTNLSLQTTRIDEHGVKFISEKLKQLRILKLCENNIGDAGA 319
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS-DGSLRKLAGLSSLKS 352
L L L L L +G G + +S + L + + I +G+ L LK
Sbjct: 320 KFLITLEKLTDLSLYSNNIGYEGAKAISTMKALTHLRIHGNPIGIEGAKEIYEQLKELKE 379
Query: 353 LNLD 356
LD
Sbjct: 380 YCLD 383
>gi|343414369|emb|CCD21014.1| leucine-rich repeat protein, putative [Trypanosoma vivax Y486]
Length = 469
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 99/297 (33%), Positives = 159/297 (53%), Gaps = 28/297 (9%)
Query: 83 LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT 142
L+ L + C I+D + L LS+L +L IT + + L N V+LDL CT
Sbjct: 45 LEKLYLSHCTGITD--VPPLSKLSSLRTLDISHCTGIT--DVSPLSKLNNFVQLDLSHCT 100
Query: 143 RIHGGLVNLKGLMKLESLNIK-WCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYL 200
G+ ++ L L SL + + +C +D+ PLS L++L++L +S C+ + ++ L
Sbjct: 101 ----GITDVSPLSVLSSLRMLFFSHCTGITDVSPLSVLSSLRTLDLSYCTGI--KHVSPL 154
Query: 201 KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNL 259
L L L+L C + LS L SL L+L+ C + + SK+ SL+ L+L
Sbjct: 155 SKLSSLEKLDLSHCTAIKH-VSPLSKLSSLCTLDLSYCTGIKHES--PLSKLSSLRTLDL 211
Query: 260 GF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 317
ITD + L L++L +L+L C GI D + L+ L +L+ L+LS G + +
Sbjct: 212 SHCTGITD--VSPLSELSSLRTLDLSHCTGITD--VSPLSELSSLRTLDLSHCT-GITDV 266
Query: 318 RHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLD-ARQITD-TGLAALTSL 371
LS L++L +++LS TGI+D S L+ LSSL++L+L ITD + L+ L+SL
Sbjct: 267 SPLSKLSSLRTLDLSHCTGITDVS--PLSELSSLRTLDLSHCTGITDVSPLSELSSL 321
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 98/187 (52%), Gaps = 14/187 (7%)
Query: 54 SQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS 112
S+ SSL ++DLS + +TD L + S+L++LD + C I+D + L LS+L +L
Sbjct: 201 SKLSSLRTLDLSHCTGITDVS--PLSELSSLRTLDLSHCTGITD--VSPLSELSSLRTLD 256
Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 172
IT + + L +L LDL CT I + L L L +L++ C IT D
Sbjct: 257 LSHCTGIT--DVSPLSKLSSLRTLDLSHCTGI-TDVSPLSELSSLRTLDLSHCTGIT--D 311
Query: 173 MKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
+ PLS L++L+ L +S C+ +TD ++ L L L +L+L C + LS L SL
Sbjct: 312 VSPLSELSSLRMLYLSHCTGITD--VSPLSELSSLRMLDLSHC-TGITDVSPLSELSSLH 368
Query: 232 YLNLNRC 238
L L+ C
Sbjct: 369 ILGLSHC 375
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 71/233 (30%), Positives = 113/233 (48%), Gaps = 20/233 (8%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNF 90
+L+ L L G+ D S+ SSL ++DLS + +TD L + S+L++LD +
Sbjct: 251 SLRTLDLSHCTGITDVSP---LSKLSSLRTLDLSHCTGITDVS--PLSELSSLRTLDLSH 305
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN 150
C I+D + L LS+L L IT + + L +L LDL CT G+ +
Sbjct: 306 CTGITD--VSPLSELSSLRMLYLSHCTGIT--DVSPLSELSSLRMLDLSHCT----GITD 357
Query: 151 LKGLMKLESLNI-KWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTL 208
+ L +L SL+I +C +D+ PL+ + + L +S C+ +TD ++ L L L
Sbjct: 358 VSPLSELSSLHILGLSHCTGITDVSPLTTIIGFEKLYLSNCTGITD--VSPLSKLSSLRS 415
Query: 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 261
L+L C + LS L SL L+++ C D SK+ SL +L L
Sbjct: 416 LDLSHC-TGITDVSPLSELSSLRTLDISHCTGITD-VSPLSKLSSLHILGLSH 466
>gi|320167410|gb|EFW44309.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 702
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 87/298 (29%), Positives = 127/298 (42%), Gaps = 35/298 (11%)
Query: 85 SLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI 144
+LD N QI+ GLS LT LS +N IT+ AF L L +L L+
Sbjct: 89 TLDVN---QITSIPATAFTGLSALTLLSLG-SNPITSMSASAFTDLTKLTQLSLDNTP-- 142
Query: 145 HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQ 204
I+ + LS LT + Q + ++ S A L+ LQ
Sbjct: 143 --------------------ITSISANAFAGLSALTQMFLYQTQITSISASAFADLRSLQ 182
Query: 205 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 264
KL L G +T+ ++ + L L YL+L+ Q++ F+ + SL L L FN++
Sbjct: 183 KLYLY---GNRITSISANAFTGLTKLAYLDLSYNQITSISANAFADLSSLTDLRLYFNQM 239
Query: 265 TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD---TQVGSSGLRHLS 321
+ GL+ L L+L + I TGL LK L L + T + ++ L
Sbjct: 240 SSLAANTFTGLSALTQLSLLNNQITAISANAFTGLNALKLLYLHNNLITTIAANSFAGLP 299
Query: 322 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
LT L+ N + T IS + GLS+L L+ QIT +A T LT L L L
Sbjct: 300 SLTVLQVYNNTITSISANA---FTGLSALTMFLLNYNQITSIPASAFTELTTLQVLAL 354
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 95/226 (42%)
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
+ N IT + LT L L + +++T GL LTLL+L P+T+ +
Sbjct: 67 YTNNITSIPANAFASLTRLTILTLDVNQITSIPATAFTGLSALTLLSLGSNPITSMSASA 126
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
+ L L L+L+ ++ F+ + +L + L +IT L +L+ L L
Sbjct: 127 FTDLTKLTQLSLDNTPITSISANAFAGLSALTQMFLYQTQITSISASAFADLRSLQKLYL 186
Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
I TGL L L+LS Q+ S + L++L + L F +S +
Sbjct: 187 YGNRITSISANAFTGLTKLAYLDLSYNQITSISANAFADLSSLTDLRLYFNQMSSLAANT 246
Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 389
GLS+L L+L QIT A T L L L L IT A
Sbjct: 247 FTGLSALTQLSLLNNQITAISANAFTGLNALKLLYLHNNLITTIAA 292
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 99/228 (43%), Gaps = 6/228 (2%)
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
N IT +GL+ L L + + +T + L KLT L+L+ P+T+ ++
Sbjct: 92 VNQITSIPATAFTGLSALTLLSLGSNPITSMSASAFTDLTKLTQLSLDNTPITSISANAF 151
Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284
+ L +L + L + Q++ F+ + SL+ L L N IT GLT L L+L
Sbjct: 152 AGLSALTQMFLYQTQITSISASAFADLRSLQKLYLYGNRITSISANAFTGLTKLAYLDLS 211
Query: 285 S---CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 341
I +L+ L +L+ + + ++ LS LT L +N T IS +
Sbjct: 212 YNQITSISANAFADLSSLTDLRLYFNQMSSLAANTFTGLSALTQLSLLNNQITAISANA- 270
Query: 342 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 389
GL++LK L L IT + L LT L ++ IT A
Sbjct: 271 --FTGLNALKLLYLHNNLITTIAANSFAGLPSLTVLQVYNNTITSISA 316
Score = 44.7 bits (104), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 90/212 (42%), Gaps = 20/212 (9%)
Query: 14 LVYSRCLTEVSLEAFRDC-ALQDLCLGQYPGVNDKWMDVIASQG-SSLLSVDLSGSDVTD 71
+Y +T +S AF D +LQ L L G + A G + L +DLS + +T
Sbjct: 161 FLYQTQITSISASAFADLRSLQKLYLY---GNRITSISANAFTGLTKLAYLDLSYNQITS 217
Query: 72 SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLI 131
D S+L L F Q+S GLS LT LS NN ITA AF GL
Sbjct: 218 ISANAFADLSSLTDLRLYFN-QMSSLAANTFTGLSALTQLSLL-NNQITAISANAFTGL- 274
Query: 132 NLVKLDLERCTRIHGGLV------NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
N +KL +H L+ + GL L L + + N IT +GL+ L
Sbjct: 275 NALKL-----LYLHNNLITTIAANSFAGLPSLTVLQV-YNNTITSISANAFTGLSALTMF 328
Query: 186 QISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
++ +++T + L L +L L+ P T
Sbjct: 329 LLNYNQITSIPASAFTELTTLQVLALDNNPFT 360
>gi|158299381|ref|XP_319486.4| AGAP010289-PA [Anopheles gambiae str. PEST]
gi|157014337|gb|EAA14603.5| AGAP010289-PA [Anopheles gambiae str. PEST]
Length = 381
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 73/248 (29%), Positives = 126/248 (50%), Gaps = 32/248 (12%)
Query: 62 VDLSGSDVTDSGLIHL--KDCSNLQSLDFNFCIQISDGGL----EHLR--------GLSN 107
V + ++TD + H D NL+ L+ + C Q++D L +HL+ G SN
Sbjct: 139 VQVGCYNITDMAIGHAFAADFPNLKVLNLSLCKQVTDSSLGRITQHLKNIEVLELGGCSN 198
Query: 108 LTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN--LKGLMKLESLNIKWC 165
+T+ + TA G A L L L+ C R+ + +GL L S+N+ +C
Sbjct: 199 ITNTGLSKE---TADGTPA------LEYLGLQDCQRLSDEALRHIAQGLTSLRSINLSFC 249
Query: 166 NCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTA--ACL 221
+TDS +K L+ ++ L+ L + +C ++D G+AYL +G ++ L++ C A A +
Sbjct: 250 VSVTDSGLKHLARMSRLEELNLRACDNISDIGMAYLTEGCNSISTLDVSFCDKVADQAMV 309
Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSK-IGSLKVLNLGF-NEITDECL-VHLKGLTNL 278
L L L+L+ CQ++D+G + +K + L+ LN+G + ITD L + L NL
Sbjct: 310 HISQGLFQLRSLSLSACQITDEGLSRIAKSLHDLETLNIGQCSRITDRGLEIVAAELINL 369
Query: 279 ESLNLDSC 286
+++L C
Sbjct: 370 RAIDLYGC 377
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 76/223 (34%), Positives = 117/223 (52%), Gaps = 36/223 (16%)
Query: 179 LTNLKSLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGCP-VTAACLDSLSALG--SLFYL 233
NLK L +S C +VTDS + + + L+ + +L L GC +T L +A G +L YL
Sbjct: 159 FPNLKVLNLSLCKQVTDSSLGRITQHLKNIEVLELGGCSNITNTGLSKETADGTPALEYL 218
Query: 234 NLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIG 289
L CQ LSD+ ++ + SL+ +NL F +TD L HL ++ LE LNL +C I
Sbjct: 219 GLQDCQRLSDEALRHIAQGLTSLRSINLSFCVSVTDSGLKHLARMSRLEELNLRACDNIS 278
Query: 290 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLA-GL 347
D G+ LT CN ++ ++++SF ++D ++ ++ GL
Sbjct: 279 DIGMAYLTEGCN-----------------------SISTLDVSFCDKVADQAMVHISQGL 315
Query: 348 SSLKSLNLDARQITDTGLAALT-SLTGLTHLDLFG-ARITDSG 388
L+SL+L A QITD GL+ + SL L L++ +RITD G
Sbjct: 316 FQLRSLSLSACQITDEGLSRIAKSLHDLETLNIGQCSRITDRG 358
Score = 42.0 bits (97), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 67/120 (55%), Gaps = 5/120 (4%)
Query: 29 RDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSD-VTDSGLIHL-KDCSNLQSL 86
R L++L L ++D M + +S+ ++D+S D V D ++H+ + L+SL
Sbjct: 262 RMSRLEELNLRACDNISDIGMAYLTEGCNSISTLDVSFCDKVADQAMVHISQGLFQLRSL 321
Query: 87 DFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFAG-LINLVKLDLERCTRI 144
+ C QI+D GL + + L +L +L+ + + IT +G++ A LINL +DL CTR+
Sbjct: 322 SLSAC-QITDEGLSRIAKSLHDLETLNIGQCSRITDRGLEIVAAELINLRAIDLYGCTRL 380
>gi|281211117|gb|EFA85283.1| Histidine kinase A [Polysphondylium pallidum PN500]
Length = 1839
Score = 73.6 bits (179), Expect = 2e-10, Method: Composition-based stats.
Identities = 104/389 (26%), Positives = 180/389 (46%), Gaps = 59/389 (15%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHL-KDCSNLQSLDFNFC 91
LQ++ L + V D + IA+ L++V L ++TD+ +IHL + C + +L + C
Sbjct: 1413 LQNINLNKCRAVTDDKIIAIANMQLPLVNVYLKKCNITDNAIIHLTQSCPKIAALQLSGC 1472
Query: 92 IQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGM-KAFAGLINLVKLDL-ERCTRIHGGL 148
+ D + + L L +R +T+ + K F L N+ + L E +
Sbjct: 1473 KNLGDASINAIATNCLGLRELRMKRCPLVTSNSIDKMFRLLHNIHIVTLAESPMAVSDNT 1532
Query: 149 VNLKG--LMKLESLNIKWCNCITDSDMKPLSGLTN-LKSLQIS-CSKVTDSGIAYL-KGL 203
+ L G +++ +N+ + ITD + L TN ++ L IS C +TD GI ++ +
Sbjct: 1533 LRLMGKYCTEIQCVNVSHNSIITDVGLINLVKFTNTIQELNISQCVNITDIGIQHIAQAC 1592
Query: 204 QKLTLLNLEGC-------PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 256
KL +L + G P+ +C D L L+++ C KI S
Sbjct: 1593 GKLRILRMSGLNNVTSLKPIGKSCAD-------LVELDISECH----------KISS--- 1632
Query: 257 LNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTG-LCNLKCLELSDTQVGS 314
+LG+ IT KG L S L C G+ D L++ G + + L + D G+
Sbjct: 1633 -DLGY--IT-------KGCPKLTSFKLRRCYGLQDVSLLSEDGEIHAMSKLSVLDWSYGN 1682
Query: 315 SGLRHLSGLT----NLESINLSF-TGISDGSLRKLA-GLSSLKSLNLDA-RQITDTGLAA 367
+ + +T +L S+N+S+ ++D S+ ++A LS+LK L +D+ ITD G+ A
Sbjct: 1683 IEFQTIHSITHSCKSLTSLNISYCKSLTDTSIERIASSLSNLKKLKMDSVVNITDDGIKA 1742
Query: 368 LTS---LTGLTHLDLFGAR-ITDSGAAYL 392
L+ + + L L G R I+D A Y+
Sbjct: 1743 LSEAPIASSIEDLSLVGCRKISDVSAQYI 1771
Score = 50.1 bits (118), Expect = 0.002, Method: Composition-based stats.
Identities = 59/232 (25%), Positives = 95/232 (40%), Gaps = 41/232 (17%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
+Q+L + Q + D + IA L + +SG + S K C++L LD + C
Sbjct: 1569 IQELNISQCVNITDIGIQHIAQACGKLRILRMSGLNNVTSLKPIGKSCADLVELDISECH 1628
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLIN----LVKLDLE----RCTRI 144
+IS +G LTS RR + + + G I+ L LD I
Sbjct: 1629 KISSDLGYITKGCPKLTSFKLRRCYGLQDVSLLSEDGEIHAMSKLSVLDWSYGNIEFQTI 1688
Query: 145 HGGLVNLKGLMKLESLNIKWCNCITDSDMKPL-SGLTNLKSLQ----------------- 186
H + K L SLNI +C +TD+ ++ + S L+NLK L+
Sbjct: 1689 HSITHSCKSLT---SLNISYCKSLTDTSIERIASSLSNLKKLKMDSVVNITDDGIKALSE 1745
Query: 187 ------------ISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 226
+ C K++D Y+ L L+L GC +T A ++S++A
Sbjct: 1746 APIASSIEDLSLVGCRKISDVSAQYILRFHNLKKLSLGGCLMTTAGVESIAA 1797
>gi|407424780|gb|EKF39143.1| hypothetical protein MOQ_000636 [Trypanosoma cruzi marinkellei]
Length = 936
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 102/391 (26%), Positives = 176/391 (45%), Gaps = 24/391 (6%)
Query: 8 QQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGS 67
QQ+ + + TEV + A R+ L LG P K V LS+ +S S
Sbjct: 310 QQVSDVTPFLPHCTEVRVLALRNTHLTSEKLGLLP---QKCRHV------EQLSLCMSSS 360
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEH-LRGLSNLTSLSFRRNNAITAQGMKA 126
L H C+ L+ LD ++ Q+++ G+ + L L+ LS I +G++
Sbjct: 361 VSCTRFLRHRSLCA-LRDLDLSY-TQVTEEGMHRDVSRLKKLSRLSLEGCRKI--EGLQW 416
Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGL--TNLKS 184
L L +LDL + L L+ +L L+++WC IT +K L G +L+
Sbjct: 417 LRALTQLRELDLGYSSVTDDSLTALRFCPELVRLDLQWCGRIT--SLKCLVGALCDSLRE 474
Query: 185 LQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 244
L ++ + VTD G+ LK L ++LEGC + ++ L L L +++ R ++++ G
Sbjct: 475 LNLTETSVTDEGLVPLKDFAALEWISLEGCGAVSD-VNVLCNLTRLREVDVGRTRVTNGG 533
Query: 245 CEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 303
S+ +L+ + + +TD L L LE ++L C + +EG+ L G +L+
Sbjct: 534 VLSLSQCQALRAMRMRQCYRLTDASF--LGALQQLEEVDLSDCPVTNEGIAALCGARSLR 591
Query: 304 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD- 362
L+L S + L GL +L ++L T + + LA L +L + + +
Sbjct: 592 KLQLQSCH-AVSDVNFLGGLEHLMLLDLHHTTVDEAGSVGLAQCPQLTTLIMHSVLVHSL 650
Query: 363 TGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
A L L LDL ++T ++LR
Sbjct: 651 QHWNAALFLPRLKRLDLSTTKVTSDALSFLR 681
Score = 71.2 bits (173), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 100/430 (23%), Positives = 171/430 (39%), Gaps = 94/430 (21%)
Query: 47 KWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC--------------- 91
+W+ + + L +DL S VTD L L+ C L LD +C
Sbjct: 415 QWLRAL----TQLRELDLGYSSVTDDSLTALRFCPELVRLDLQWCGRITSLKCLVGALCD 470
Query: 92 ---------IQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT 142
++D GL L+ + L +S A++ + L L ++D+ R
Sbjct: 471 SLRELNLTETSVTDEGLVPLKDFAALEWISLEGCGAVS--DVNVLCNLTRLREVDVGRTR 528
Query: 143 RIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKG 202
+GG+++L L ++ ++ C +TD+ L L L+ + +S VT+ GIA L G
Sbjct: 529 VTNGGVLSLSQCQALRAMRMRQCYRLTDASF--LGALQQLEEVDLSDCPVTNEGIAALCG 586
Query: 203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG------CEKFSK------ 250
+ L L L+ C + ++ L L L L+L+ + + G C + +
Sbjct: 587 ARSLRKLQLQSCHAVSD-VNFLGGLEHLMLLDLHHTTVDEAGSVGLAQCPQLTTLIMHSV 645
Query: 251 -------------IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC----------- 286
+ LK L+L ++T + L L+ LE+L+L C
Sbjct: 646 LVHSLQHWNAALFLPRLKRLDLSTTKVTSDALSFLRMCPILETLSLRGCKNITHLDFLII 705
Query: 287 ----GIG-----------DEGLVNLT---------GLCNLKCLELSDTQVGSSGLRHLSG 322
G+G + LV++ G ++ + ++D + S+ + G
Sbjct: 706 QTSSGVGVCGIAPHDAEPHDTLVDIIAGKEKNPDDGPSPIENMTINDGAIKSTAAAPVVG 765
Query: 323 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 382
L + LS TG+++ LR L L+ L L A T +A L L+ L LDL
Sbjct: 766 RHRLRELTLSDTGVTNDGLRALQYCPGLERLRL-AHCKNVTEVAVLRWLSQLKELDLSAT 824
Query: 383 RITDSGAAYL 392
+T SG A L
Sbjct: 825 GVTGSGLANL 834
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 82/354 (23%), Positives = 148/354 (41%), Gaps = 42/354 (11%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+ L VD+ + VT+ G++ L C L+++ C +++D L L L + +
Sbjct: 517 TRLREVDVGRTRVTNGGVLSLSQCQALRAMRMRQCYRLTDASF--LGALQQLEEVDLS-D 573
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIH-----GGLVNLK---------------GLMK 156
+T +G+ A G +L KL L+ C + GGL +L GL +
Sbjct: 574 CPVTNEGIAALCGARSLRKLQLQSCHAVSDVNFLGGLEHLMLLDLHHTTVDEAGSVGLAQ 633
Query: 157 LESLNIKWCNCITDSDMKPLSG---LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
L + + ++ + L LK L +S +KVT +++L+ L L+L G
Sbjct: 634 CPQLTTLIMHSVLVHSLQHWNAALFLPRLKRLDLSTTKVTSDALSFLRMCPILETLSLRG 693
Query: 214 CPVTAACLDSL-----SALGSLFYLNLNRCQLSDD------GCEKFSKIGSLKVLNLGFN 262
C LD L S +G + + + + D G EK G + N+ N
Sbjct: 694 C-KNITHLDFLIIQTSSGVG-VCGIAPHDAEPHDTLVDIIAGKEKNPDDGPSPIENMTIN 751
Query: 263 E--ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 320
+ I + G L L L G+ ++GL L L+ L L+ + + + L
Sbjct: 752 DGAIKSTAAAPVVGRHRLRELTLSDTGVTNDGLRALQYCPGLERLRLAHCK-NVTEVAVL 810
Query: 321 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 374
L+ L+ ++LS TG++ L L+ +L + R+ + G + ++TG+
Sbjct: 811 RWLSQLKELDLSATGVTGSGLANLSPSGNLPVRCMREREWKEEGGVSGDNMTGV 864
>gi|290974240|ref|XP_002669854.1| predicted protein [Naegleria gruberi]
gi|284083406|gb|EFC37110.1| predicted protein [Naegleria gruberi]
Length = 357
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 104/209 (49%), Gaps = 6/209 (2%)
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV-TAACLDSLSALGSLFYLN 234
+ L+ L L ++ S VT Y++ + + LNL + +CL L+ L +L L
Sbjct: 144 IGNLSRLTYLNLNASSVTSESCQYIQKCELIKNLNLSDNKIGNESCL-YLTKLKNLTILR 202
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
L C +S+ G E S+I +L +LN+ N I D+ V++ L NL SL SC + E +
Sbjct: 203 LEDCNISEKGVEHLSQIETLTILNVSKNRIEDDGFVNICKLKNLTSLKAASCSV--ESIK 260
Query: 295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 354
N+T L L L L + + G++ + LTNL+++ L +++ L LSS++ L+
Sbjct: 261 NITNLIKLTSLNLGQNSIDNEGVKIIGELTNLKTLTLENNVFQPEAVQYLTKLSSMEVLD 320
Query: 355 LDARQITDTGLAAL--TSLTGLTHLDLFG 381
L ++ + L T+L L + +
Sbjct: 321 LRDNNLSFDNVKCLNATNLPKLYQIQIIS 349
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 95/206 (46%), Gaps = 17/206 (8%)
Query: 202 GLQKLTLLNLEGCPVTA--ACLDSLSALG-------------SLFYLNLNRCQLSDDGCE 246
L++L L+ LE V A L+SLS +G L YLNLN ++ + C+
Sbjct: 107 SLKRLNLIGLEVSNVVARFGSLESLSLIGMGAEIGNSIGNLSRLTYLNLNASSVTSESCQ 166
Query: 247 KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 306
K +K LNL N+I +E ++L L NL L L+ C I ++G+ +L+ + L L
Sbjct: 167 YIQKCELIKNLNLSDNKIGNESCLYLTKLKNLTILRLEDCNISEKGVEHLSQIETLTILN 226
Query: 307 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 366
+S ++ G ++ L NL S L S S++ + L L SLNL I + G+
Sbjct: 227 VSKNRIEDDGFVNICKLKNLTS--LKAASCSVESIKNITNLIKLTSLNLGQNSIDNEGVK 284
Query: 367 ALTSLTGLTHLDLFGARITDSGAAYL 392
+ LT L L L YL
Sbjct: 285 IIGELTNLKTLTLENNVFQPEAVQYL 310
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 73/151 (48%), Gaps = 5/151 (3%)
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
+++LS + + + ++L NL L C IS+ G+EHL + LT L+ + N I
Sbjct: 176 NLNLSDNKIGNESCLYLTKLKNLTILRLEDC-NISEKGVEHLSQIETLTILNVSK-NRIE 233
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
G L NL L C+ + N+ L+KL SLN+ N I + +K + LT
Sbjct: 234 DDGFVNICKLKNLTSLKAASCSV--ESIKNITNLIKLTSLNLGQ-NSIDNEGVKIIGELT 290
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
NLK+L + + + YL L + +L+L
Sbjct: 291 NLKTLTLENNVFQPEAVQYLTKLSSMEVLDL 321
>gi|290980573|ref|XP_002673006.1| predicted protein [Naegleria gruberi]
gi|284086587|gb|EFC40262.1| predicted protein [Naegleria gruberi]
Length = 361
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 68/239 (28%), Positives = 116/239 (48%), Gaps = 4/239 (1%)
Query: 100 EHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 159
E L+G+ +L + + +G+K L L LD+ +GG+ L L +L
Sbjct: 108 EILQGMKDLKEVWIYKQ-LKGVKGIKKIGSLKQLTILDVSYNDIGYGGVKWLTQLSQLTE 166
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
L I N I D D+K +S + L L +S ++ D G+ YL L+ LT L L G +T
Sbjct: 167 LRI-GNNSIFDDDIKMISEMKQLTKLDLSNCRIMD-GVQYLSKLENLTSLRLCGNRLTDE 224
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
++S+S L L L + QL +G + + L LN+ N I+ + + +L+ L L
Sbjct: 225 RVESISNLKQLTELYIGENQLGTEGAKSIGNMTQLTRLNIQQNRIS-QGVKYLEKLDRLT 283
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
LN+ IGD G++ ++ + L L + D ++ G + L L L +++S +S+
Sbjct: 284 DLNISKNKIGDTGVIIISEMNQLTKLTIRDNKISEEGAKTLGLLQKLTYLDISDNSVSN 342
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 70/254 (27%), Positives = 121/254 (47%), Gaps = 12/254 (4%)
Query: 149 VNLKGLMKLESLN----IKWCNCITDSDM------KPLSGLTNLKSLQISCSKVTDSGIA 198
+NLK L K + LN +K N S + + L G+ +LK + I GI
Sbjct: 73 INLKSLAKSQYLNRIVSLKTVNSFDGSIIDNVELCEILQGMKDLKEVWIYKQLKGVKGIK 132
Query: 199 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 258
+ L++LT+L++ + + L+ L L L + + DD + S++ L L+
Sbjct: 133 KIGSLKQLTILDVSYNDIGYGGVKWLTQLSQLTELRIGNNSIFDDDIKMISEMKQLTKLD 192
Query: 259 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 318
L I D + +L L NL SL L + DE + +++ L L L + + Q+G+ G +
Sbjct: 193 LSNCRIMD-GVQYLSKLENLTSLRLCGNRLTDERVESISNLKQLTELYIGENQLGTEGAK 251
Query: 319 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 378
+ +T L +N+ IS G ++ L L L LN+ +I DTG+ ++ + LT L
Sbjct: 252 SIGNMTQLTRLNIQQNRISQG-VKYLEKLDRLTDLNISKNKIGDTGVIIISEMNQLTKLT 310
Query: 379 LFGARITDSGAAYL 392
+ +I++ GA L
Sbjct: 311 IRDNKISEEGAKTL 324
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 105/217 (48%), Gaps = 2/217 (0%)
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
+K + L L L +S + + G+ +L L +LT L + + + +S + L
Sbjct: 131 IKKIGSLKQLTILDVSYNDIGYGGVKWLTQLSQLTELRIGNNSIFDDDIKMISEMKQLTK 190
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
L+L+ C++ D G + SK+ +L L L N +TDE + + L L L + +G EG
Sbjct: 191 LDLSNCRIMD-GVQYLSKLENLTSLRLCGNRLTDERVESISNLKQLTELYIGENQLGTEG 249
Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
++ + L L + ++ S G+++L L L +N+S I D + ++ ++ L
Sbjct: 250 AKSIGNMTQLTRLNIQQNRI-SQGVKYLEKLDRLTDLNISKNKIGDTGVIIISEMNQLTK 308
Query: 353 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 389
L + +I++ G L L LT+LD+ +++ A
Sbjct: 309 LTIRDNKISEEGAKTLGLLQKLTYLDISDNSVSNVTA 345
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 99/206 (48%), Gaps = 11/206 (5%)
Query: 94 ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
I GG++ L LS LT L NN+I +K + + L KLDL C RI G+ L
Sbjct: 150 IGYGGVKWLTQLSQLTELRIG-NNSIFDDDIKMISEMKQLTKLDLSNC-RIMDGVQYLSK 207
Query: 154 LMKLESLNIKWC-NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
L L SL + C N +TD ++ +S L L L I +++ G + + +LT LN++
Sbjct: 208 LENLTSL--RLCGNRLTDERVESISNLKQLTELYIGENQLGTEGAKSIGNMTQLTRLNIQ 265
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
++ + L L L LN+++ ++ D G S++ L L + N+I++E L
Sbjct: 266 QNRISQG-VKYLEKLDRLTDLNISKNKIGDTGVIIISEMNQLTKLTIRDNKISEEGAKTL 324
Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTG 298
L L L+ I D + N+T
Sbjct: 325 GLLQKLTYLD-----ISDNSVSNVTA 345
>gi|428298451|ref|YP_007136757.1| small GTP-binding protein [Calothrix sp. PCC 6303]
gi|428234995|gb|AFZ00785.1| small GTP-binding protein [Calothrix sp. PCC 6303]
Length = 1408
Score = 73.2 bits (178), Expect = 2e-10, Method: Composition-based stats.
Identities = 96/298 (32%), Positives = 141/298 (47%), Gaps = 39/298 (13%)
Query: 100 EHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 159
E L L+NLT L+ N I KA A L NL +LDL R
Sbjct: 488 EALAKLTNLTQLNLSDNQIIKIP--KALAKLSNLTQLDLNR------------------- 526
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
N IT+ + L+ LTNL L + +++T+ A K L LT L+L +
Sbjct: 527 ------NKITEIP-EALAKLTNLTQLYLRNNRITEIPEALAK-LTNLTQLDLGTNYNISE 578
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
++++ L +L LNL Q+++ E +K+ +L LNL N+I E + LTNL
Sbjct: 579 IPEAITKLTNLTQLNLTSSQITEIP-EVIAKLTNLTQLNLTSNQIA-EIPEAIAKLTNLT 636
Query: 280 SLNLDSCGIGD--EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 337
L L S I + E + LT NL L L+ Q+ + ++ LTNL + LS+ I+
Sbjct: 637 QLILTSNQITEIPEAIAKLT---NLTQLNLTSNQI-TKIPEAIAKLTNLTQLILSYNQIT 692
Query: 338 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRSK 395
+ +A L++L L L + QIT+ A+T LT LT LDL RI++ L SK
Sbjct: 693 EIP-EAIAKLTNLTQLILTSNQITEIP-DAITKLTNLTQLDLSYNRISEIPLEILDSK 748
Score = 63.5 bits (153), Expect = 2e-07, Method: Composition-based stats.
Identities = 108/361 (29%), Positives = 163/361 (45%), Gaps = 78/361 (21%)
Query: 81 SNLQSLD--FNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL 138
+NL LD +N +IS E L L NLT + NN IT + A A LINL +LDL
Sbjct: 264 TNLTQLDLSYNQITKIS----EALAKLINLTQIILH-NNKIT-EIPDALAKLINLTQLDL 317
Query: 139 E--RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-- 194
+ T+I L L L +L I + N IT+ + ++ LTNL L +S +++T
Sbjct: 318 SYNQITKIPEALAKLTNLTQL----ILYSNQITEIP-EVIAKLTNLTQLDLSYNQITKIP 372
Query: 195 SGIAYLKGLQKLTLLN--LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG 252
+A L L +L L + + P A L +L+ + L+ NR + E +K+
Sbjct: 373 EALAKLTNLTQLILYSNRISEIPEALAKLINLTQI----ILSYNRIS---EIPEALAKLT 425
Query: 253 SLKVLNLGFNEITD------------ECLVH----------LKGLTNLESLNLDSCGIGD 290
+L L+L +N+IT + ++H L LTNL L L I +
Sbjct: 426 NLTQLDLSYNQITKIPEALAKLINLTQIILHSNKITEIPEALAKLTNLRQLYLSYNRITE 485
Query: 291 --EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 348
E L LT NL L LSD Q+ + L+ L+NL ++L+ I++ LA L+
Sbjct: 486 IPEALAKLT---NLTQLNLSDNQIIKIP-KALAKLSNLTQLDLNRNKITEIP-EALAKLT 540
Query: 349 SLKSLNLDARQITDTGLA-----------------------ALTSLTGLTHLDLFGARIT 385
+L L L +IT+ A A+T LT LT L+L ++IT
Sbjct: 541 NLTQLYLRNNRITEIPEALAKLTNLTQLDLGTNYNISEIPEAITKLTNLTQLNLTSSQIT 600
Query: 386 D 386
+
Sbjct: 601 E 601
Score = 55.8 bits (133), Expect = 3e-05, Method: Composition-based stats.
Identities = 95/316 (30%), Positives = 139/316 (43%), Gaps = 50/316 (15%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
+ + SNL L FN IS E + LSNL L N + +A A L NL +L
Sbjct: 122 IANLSNLTQLYFN-SNHISKIP-ELIAKLSNLRELHVSSNK--ITEIPEAIAKLSNLREL 177
Query: 137 DLE--RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 194
+ + T I + NL L +L + N IT+ + ++ L NL+ LQ+S +K+T+
Sbjct: 178 HVSSNQITEIPEAIANLSNLRELHVSS----NQITEIP-EAIAKLINLRELQVSSNKITE 232
Query: 195 --SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG 252
IA L L+KL L N + + E +K+
Sbjct: 233 IPEVIAKLTNLRKLYLRNNQITEIP----------------------------EVIAKLT 264
Query: 253 SLKVLNLGFNEIT--DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 310
+L L+L +N+IT E L L LT + N I D L L NL L+LS
Sbjct: 265 NLTQLDLSYNQITKISEALAKLINLTQIILHNNKITEIPDA----LAKLINLTQLDLSYN 320
Query: 311 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 370
Q+ + L+ LTNL + L I++ +A L++L L+L QIT AL
Sbjct: 321 QI-TKIPEALAKLTNLTQLILYSNQITEIP-EVIAKLTNLTQLDLSYNQITKIP-EALAK 377
Query: 371 LTGLTHLDLFGARITD 386
LT LT L L+ RI++
Sbjct: 378 LTNLTQLILYSNRISE 393
>gi|157865947|ref|XP_001681680.1| putative surface antigen protein [Leishmania major strain Friedlin]
gi|68124978|emb|CAJ02759.1| putative surface antigen protein [Leishmania major strain Friedlin]
Length = 610
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 118/244 (48%), Gaps = 1/244 (0%)
Query: 143 RIHGGL-VNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLK 201
++ G L + + LESL+I+ C I+ + S + +L L + +KV+ S
Sbjct: 143 KVSGTLPASWHSMTSLESLSIEKCESISGALPPQWSSMKSLSFLNLDGAKVSGSLPPQWS 202
Query: 202 GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 261
++ L L+L V+ + S++ L +LNL+ ++S ++S + L VL++
Sbjct: 203 SMKSLRTLDLGDTQVSGSLPPQWSSMTLLSFLNLDGAKVSGALPPQWSSMTLLAVLDVQG 262
Query: 262 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 321
+++ + +L LNL I + + +L L++ TQV + S
Sbjct: 263 TQVSGTLPPQWSSMKSLSVLNLRGTSISGSVPPQWSSMTSLAVLDVQGTQVSGTLPPQWS 322
Query: 322 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 381
+T+L S+++ T +S + + ++SL +LNL Q++ T +S+T LT LD+ G
Sbjct: 323 LMTSLTSLDVQGTQVSGSVPPQWSSMTSLTALNLRGTQVSGTLPPQWSSMTSLTSLDVQG 382
Query: 382 ARIT 385
+++
Sbjct: 383 TQVS 386
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 96/198 (48%), Gaps = 1/198 (0%)
Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 249
KV+ + A + L L++E C ++ A S++ SL +LNL+ ++S ++S
Sbjct: 143 KVSGTLPASWHSMTSLESLSIEKCESISGALPPQWSSMKSLSFLNLDGAKVSGSLPPQWS 202
Query: 250 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 309
+ SL+ L+LG +++ +T L LNLD + + + L L++
Sbjct: 203 SMKSLRTLDLGDTQVSGSLPPQWSSMTLLSFLNLDGAKVSGALPPQWSSMTLLAVLDVQG 262
Query: 310 TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 369
TQV + S + +L +NL T IS + + ++SL L++ Q++ T +
Sbjct: 263 TQVSGTLPPQWSSMKSLSVLNLRGTSISGSVPPQWSSMTSLAVLDVQGTQVSGTLPPQWS 322
Query: 370 SLTGLTHLDLFGARITDS 387
+T LT LD+ G +++ S
Sbjct: 323 LMTSLTSLDVQGTQVSGS 340
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 79/344 (22%), Positives = 150/344 (43%), Gaps = 23/344 (6%)
Query: 6 ISQQIFNEL---VYSRCLTEVSLEA-FRDCALQDLCLGQYP----GVNDKWMDVIASQGS 57
+S +F L Y+ L E+ + +R ++DL P + D W S+
Sbjct: 78 VSVNVFVSLDVSTYAGTLPEMPVGVDYRHVMIRDLGFWNMPLLSGTLPDSW-----SKLE 132
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
L + L G+ V+ + ++L+SL C IS G L S++ SLSF +
Sbjct: 133 KLTFLTLLGNKVSGTLPASWHSMTSLESLSIEKCESIS-GALPP--QWSSMKSLSFLNLD 189
Query: 118 AITAQG--MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES-LNIKWCNCITDSDMK 174
G ++ + +L LDL T++ G L M L S LN+ +
Sbjct: 190 GAKVSGSLPPQWSSMKSLRTLDLGD-TQVSGSLPPQWSSMTLLSFLNLD--GAKVSGALP 246
Query: 175 P-LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
P S +T L L + ++V+ + ++ L++LNL G ++ + S++ SL L
Sbjct: 247 PQWSSMTLLAVLDVQGTQVSGTLPPQWSSMKSLSVLNLRGTSISGSVPPQWSSMTSLAVL 306
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
++ Q+S ++S + SL L++ +++ +T+L +LNL +
Sbjct: 307 DVQGTQVSGTLPPQWSLMTSLTSLDVQGTQVSGSVPPQWSSMTSLTALNLRGTQVSGTLP 366
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 337
+ + +L L++ TQV + S +T+L ++++ T +S
Sbjct: 367 PQWSSMTSLTSLDVQGTQVSGTLPPQWSSMTSLAALDVQGTQVS 410
Score = 46.6 bits (109), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 75/311 (24%), Positives = 142/311 (45%), Gaps = 12/311 (3%)
Query: 51 VIASQGSSLLSV---DLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSN 107
+ Q SS+ S+ +L G+ V+ S +L++LD Q+S G L S+
Sbjct: 172 ALPPQWSSMKSLSFLNLDGAKVSGSLPPQWSSMKSLRTLDLGD-TQVS-GSLPP--QWSS 227
Query: 108 LTSLSFRRNNAITAQGM--KAFAGLINLVKLDLERCTRIHGGLVNLKGLMK-LESLNIKW 164
+T LSF + G ++ + L LD++ T++ G L MK L LN++
Sbjct: 228 MTLLSFLNLDGAKVSGALPPQWSSMTLLAVLDVQG-TQVSGTLPPQWSSMKSLSVLNLR- 285
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
I+ S S +T+L L + ++V+ + + LT L+++G V+ +
Sbjct: 286 GTSISGSVPPQWSSMTSLAVLDVQGTQVSGTLPPQWSLMTSLTSLDVQGTQVSGSVPPQW 345
Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284
S++ SL LNL Q+S ++S + SL L++ +++ +T+L +L++
Sbjct: 346 SSMTSLTALNLRGTQVSGTLPPQWSSMTSLTSLDVQGTQVSGTLPPQWSSMTSLAALDVQ 405
Query: 285 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 344
+ + + L L L+DT + + S L +L ++ LS + +S +
Sbjct: 406 GTQVSGTLPPQWSSMRRLTHLLLTDTLLSGTLPAEWSALQSLVTLQLSSSKVSGTLPPQW 465
Query: 345 AGLSSLKSLNL 355
+G+S +SL L
Sbjct: 466 SGMSKAQSLQL 476
>gi|422414916|ref|ZP_16491873.1| internalin A, partial [Listeria innocua FSL J1-023]
gi|313625062|gb|EFR94940.1| internalin A [Listeria innocua FSL J1-023]
Length = 676
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 104/333 (31%), Positives = 162/333 (48%), Gaps = 36/333 (10%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDIVMNNN-QIAD--ISPLANLTNLTGLTLFTN 152
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+K L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 153 QITDIDPLK---NLTNLNRLELSGNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN-- 234
+ LT L+ L IS +KVTD + L KLT NLE T + ++ LG L L+
Sbjct: 204 ANLTTLERLDISSNKVTDISV-----LSKLT--NLERLIATNNQISDITPLGILINLDEL 256
Query: 235 -LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
LN QL D G + +L L+L N+I++ L L LT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LVSLTNLTNLDLANNQISN--LAPLTDLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
L GL L LEL + Q+ + +S L NL + L ISD + ++ L+ L+ L
Sbjct: 311 SPLAGLTALTNLELHENQL--EDISPISNLKNLTYLTLYINNISD--ISPVSSLTKLQRL 366
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
+++D +++L +LT + L +I+D
Sbjct: 367 FFYNNKVSD--VSSLANLTNINWLSAGNNQISD 397
>gi|388455805|ref|ZP_10138100.1| hypothetical protein FdumT_04498 [Fluoribacter dumoffii Tex-KL]
Length = 398
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 103/200 (51%)
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
LKSL + + + + GI +L+ + ++LE + + ++ +LFYLNL++ +
Sbjct: 194 LKSLYLGNNHLGNEGIKFLENNHSINFIDLENNNIDQDGIPTIVRKPNLFYLNLDKNPIH 253
Query: 242 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN 301
+ G ++ ++ L++ + E L L +L LN+D IGDEG++ L + +
Sbjct: 254 NAGAALLAQASMVRWLSIADCRVGIEGAQALAALHHLAMLNIDKNFIGDEGIIALAKMRS 313
Query: 302 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 361
L L ++ +G G ++L+ L++++L+ I D LA ++L +L++ QI+
Sbjct: 314 LNNLYANNNSIGDEGAKNLANAIQLQNLSLNHNQIGDEGALALAETATLYALDVGYNQIS 373
Query: 362 DTGLAALTSLTGLTHLDLFG 381
G+ AL + L +L+ G
Sbjct: 374 VIGVNALKNNEALAYLNTQG 393
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 69/264 (26%), Positives = 119/264 (45%), Gaps = 6/264 (2%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
I G E L S L LS +N I A G K A L+ L L R ++I G +
Sbjct: 131 HIGPYGAEALAKNSTLFFLSLD-SNPIGASGAKELAKNKTLIHLSL-RKSQI--GAAGAR 186
Query: 153 GLMKLESLNIKWC--NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
L E+L + N + + +K L ++ + + + + GI + L LN
Sbjct: 187 ALFANETLKSLYLGNNHLGNEGIKFLENNHSINFIDLENNNIDQDGIPTIVRKPNLFYLN 246
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
L+ P+ A L+ + +L++ C++ +G + + + L +LN+ N I DE ++
Sbjct: 247 LDKNPIHNAGAALLAQASMVRWLSIADCRVGIEGAQALAALHHLAMLNIDKNFIGDEGII 306
Query: 271 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 330
L + +L +L ++ IGDEG NL L+ L L+ Q+G G L+ L +++
Sbjct: 307 ALAKMRSLNNLYANNNSIGDEGAKNLANAIQLQNLSLNHNQIGDEGALALAETATLYALD 366
Query: 331 LSFTGISDGSLRKLAGLSSLKSLN 354
+ + IS + L +L LN
Sbjct: 367 VGYNQISVIGVNALKNNEALAYLN 390
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 98/224 (43%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
N I + L+ + L L + + + SG L + L L+L + AA +L
Sbjct: 130 NHIGPYGAEALAKNSTLFFLSLDSNPIGASGAKELAKNKTLIHLSLRKSQIGAAGARALF 189
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
A +L L L L ++G + S+ ++L N I + + + NL LNLD
Sbjct: 190 ANETLKSLYLGNNHLGNEGIKFLENNHSINFIDLENNNIDQDGIPTIVRKPNLFYLNLDK 249
Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 345
I + G L ++ L ++D +VG G + L+ L +L +N+ I D + LA
Sbjct: 250 NPIHNAGAALLAQASMVRWLSIADCRVGIEGAQALAALHHLAMLNIDKNFIGDEGIIALA 309
Query: 346 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 389
+ SL +L + I D G L + L +L L +I D GA
Sbjct: 310 KMRSLNNLYANNNSIGDEGAKNLANAIQLQNLSLNHNQIGDEGA 353
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 88/196 (44%)
Query: 197 IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 256
+AYL ++T L+L + + L++ + YL L ++ G E S+ SL
Sbjct: 65 VAYLDKHPEITRLSLSDNQIGYQGAELLASNTHIRYLFLTGNRIGSLGAEALSQNTSLIY 124
Query: 257 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 316
L LG N I L + L L+LDS IG G L L L L +Q+G++G
Sbjct: 125 LLLGENHIGPYGAEALAKNSTLFFLSLDSNPIGASGAKELAKNKTLIHLSLRKSQIGAAG 184
Query: 317 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 376
R L L+S+ L + + ++ L S+ ++L+ I G+ + L +
Sbjct: 185 ARALFANETLKSLYLGNNHLGNEGIKFLENNHSINFIDLENNNIDQDGIPTIVRKPNLFY 244
Query: 377 LDLFGARITDSGAAYL 392
L+L I ++GAA L
Sbjct: 245 LNLDKNPIHNAGAALL 260
Score = 45.4 bits (106), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 88/217 (40%), Gaps = 5/217 (2%)
Query: 183 KSLQISCSKVTDSGIAY-----LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
K +I+ ++D+ I Y L + L L G + + ++LS SL YL L
Sbjct: 70 KHPEITRLSLSDNQIGYQGAELLASNTHIRYLFLTGNRIGSLGAEALSQNTSLIYLLLGE 129
Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
+ G E +K +L L+L N I L L L+L IG G L
Sbjct: 130 NHIGPYGAEALAKNSTLFFLSLDSNPIGASGAKELAKNKTLIHLSLRKSQIGAAGARALF 189
Query: 298 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 357
LK L L + +G+ G++ L ++ I+L I + + +L LNLD
Sbjct: 190 ANETLKSLYLGNNHLGNEGIKFLENNHSINFIDLENNNIDQDGIPTIVRKPNLFYLNLDK 249
Query: 358 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRS 394
I + G A L + + L + R+ GA L +
Sbjct: 250 NPIHNAGAALLAQASMVRWLSIADCRVGIEGAQALAA 286
>gi|335427390|ref|ZP_08554321.1| Rab family protein [Haloplasma contractile SSD-17B]
gi|334895063|gb|EGM33243.1| Rab family protein [Haloplasma contractile SSD-17B]
Length = 1451
Score = 72.8 bits (177), Expect = 2e-10, Method: Composition-based stats.
Identities = 80/238 (33%), Positives = 122/238 (51%), Gaps = 17/238 (7%)
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTL 208
+L L +++L W +D+ L+ L+NL SL +S ++V+D + + L LQ + L
Sbjct: 1097 DLSSLQNIKTLKNLWLENNNITDLSVLANLSNLDSLYLSNNQVSDLTPLINLANLQNVYL 1156
Query: 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 268
N + ++ S + +L L+L+ Q++D S +L L+L N+ITD
Sbjct: 1157 SNNQ----VTTLPENFSNMLNLNGLHLSGNQITD--VTPLSTAPALIELDLSNNQITD-- 1208
Query: 269 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 328
L + LT L SLNL+ I D L L L L L L++ Q+ S L L GLTNL
Sbjct: 1209 LTNYDLLTYLFSLNLNDNSISD--LTPLANLTKLSSLRLNNNQI--SDLTPLGGLTNLTH 1264
Query: 329 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
+ ISD L L L+ + L L+ QI+D L AL+SLT L++L + +ITD
Sbjct: 1265 LYAENNAISD--LTPLTNLNKIWYLVLNGNQISD--LTALSSLTDLSYLRMNNNQITD 1318
Score = 60.5 bits (145), Expect = 1e-06, Method: Composition-based stats.
Identities = 101/337 (29%), Positives = 156/337 (46%), Gaps = 65/337 (19%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGL----EHLRGLSNLTSLS 112
S+L S+ LS + V+D L L + +NLQ+ + +S+ + E+ + NL L
Sbjct: 1127 SNLDSLYLSNNQVSD--LTPLINLANLQN------VYLSNNQVTTLPENFSNMLNLNGLH 1178
Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 172
N + LI L L + T L N L L SLN+ N + SD
Sbjct: 1179 LSGNQITDVTPLSTAPALIEL-DLSNNQIT----DLTNYDLLTYLFSLNL---NDNSISD 1230
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
+ PL+ LT L SL+++ ++++D + L GL LT L E ++ L L+ L ++Y
Sbjct: 1231 LTPLANLTKLSSLRLNNNQISD--LTPLGGLTNLTHLYAENNAISD--LTPLTNLNKIWY 1286
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
L LN Q+SD L L LT+L L +++ I D
Sbjct: 1287 LVLNGNQISD--------------------------LTALSSLTDLSYLRMNNNQITD-- 1318
Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN---LSFTGISDGSLRKLAGLSS 349
L+ L NL+ LSD Q+ ++ + LS L N SI+ L+ ISD S+ ++ +
Sbjct: 1319 ---LSPLQNLR---LSDLQLNNNLISDLSYLANSTSISKLLLNNNQISDISV--ISNFTG 1370
Query: 350 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
L++L LD I+D L+AL+S T L L L I+D
Sbjct: 1371 LRTLELDDNMISD--LSALSSQTNLELLYLRNNLISD 1405
>gi|290892592|ref|ZP_06555585.1| InlE protein [Listeria monocytogenes FSL J2-071]
gi|404406718|ref|YP_006689433.1| internalin E [Listeria monocytogenes SLCC2376]
gi|290557901|gb|EFD91422.1| InlE protein [Listeria monocytogenes FSL J2-071]
gi|404240867|emb|CBY62267.1| internalin E (LPXTG motif) [Listeria monocytogenes SLCC2376]
Length = 499
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 72/213 (33%), Positives = 107/213 (50%), Gaps = 38/213 (17%)
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
LTNL L+++ +++TD ++ L L K+T L L G P L +SA+ L
Sbjct: 95 LTNLSELELTDNQITD--VSPLANLTKITELGLSGNP-----LKDVSAIAGL-------- 139
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
SLK+L+L + +ITD + L GLTNL+ LNLD I D + L
Sbjct: 140 -------------KSLKMLHLIYTDITD--VTSLAGLTNLQELNLDINQITD--ISPLAA 182
Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
L NL+ L L TQV S L L+ L+ L +N + +SD + LA LSSL + L
Sbjct: 183 LTNLQTLSLGYTQV--SDLTPLANLSKLTILNAENSKVSD--ISPLASLSSLAEVYLREN 238
Query: 359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
QI+D ++ L ++ L+ ++L IT+ Y
Sbjct: 239 QISD--VSPLANIPNLSIIELTDQIITNQPVYY 269
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 70/122 (57%), Gaps = 17/122 (13%)
Query: 274 GLTNLESL----NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG-----LRHLSGLT 324
G+T +E + NL + D + +++ L NL + T++G SG + ++GL
Sbjct: 85 GITTIEGMQYLTNLSELELTDNQITDVSPLANLTKI----TELGLSGNPLKDVSAIAGLK 140
Query: 325 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 384
+L+ ++L +T I+D + LAGL++L+ LNLD QITD ++ L +LT L L L ++
Sbjct: 141 SLKMLHLIYTDITD--VTSLAGLTNLQELNLDINQITD--ISPLAALTNLQTLSLGYTQV 196
Query: 385 TD 386
+D
Sbjct: 197 SD 198
Score = 45.4 bits (106), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 64/262 (24%), Positives = 115/262 (43%), Gaps = 46/262 (17%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
+Q + Q +N+ + D + + L L +DVTD + D +
Sbjct: 31 VQAAVIEQPTPINEIFTDPVVADNVKTL---LEKADVTDE----------VTQTDLDSIT 77
Query: 93 QIS--DGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL-DLERCTRIHGGLV 149
Q+S G+ + G+ LT+LS +T + + L NL K+ +L +
Sbjct: 78 QLSAKSAGITTIEGMQYLTNLSELE---LTDNQITDVSPLANLTKITELGLSGNPLKDVS 134
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQ---- 204
+ GL L+ L++ + + +D+ L+GLTNL+ L + +++TD S +A L LQ
Sbjct: 135 AIAGLKSLKMLHLIYTDI---TDVTSLAGLTNLQELNLDINQITDISPLAALTNLQTLSL 191
Query: 205 ---------------KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 249
KLT+LN E V + + L++L SL + L Q+SD +
Sbjct: 192 GYTQVSDLTPLANLSKLTILNAENSKV--SDISPLASLSSLAEVYLRENQISD--VSPLA 247
Query: 250 KIGSLKVLNLGFNEITDECLVH 271
I +L ++ L IT++ + +
Sbjct: 248 NIPNLSIIELTDQIITNQPVYY 269
>gi|326693673|ref|ZP_08230678.1| internalin A [Leuconostoc argentinum KCTC 3773]
Length = 722
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 109/362 (30%), Positives = 163/362 (45%), Gaps = 63/362 (17%)
Query: 50 DVIASQG--SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSN 107
DV +Q + L +V+L+ SD+T+ L L+ NLQ LD ISD L L+ L+
Sbjct: 60 DVPLTQANLAKLTTVNLTYSDITN--LKGLEFAKNLQQLDLTGNA-ISD--LSPLQHLTQ 114
Query: 108 LTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNC 167
LT LS R N A L L KL + I+ N
Sbjct: 115 LTDLSLRLNRAD------------------------------QLPDLAKLGQVPIQQLNL 144
Query: 168 ITDS------DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 221
+ D+ + LS LT L+SL++ SK+T + L LT L+L G +T A
Sbjct: 145 VGDAYGTAPQQLAGLSQLTQLQSLKLVNSKLT--TLPPLAPTAPLTELDLSGNKLTDAT- 201
Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 281
L+ L L+L Q++D + + L L G N T+ + L+ LT L+ L
Sbjct: 202 -GLANFPLLTTLSLGSNQIAD--WRPVANLSHLTSLTTGNNPQTNISV--LQRLTQLKKL 256
Query: 282 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 341
NL G+ ++ L + + NL+ L + D S L L+GL L ++ S +SD L
Sbjct: 257 NLSQLGMTNQDLKLVANMTNLQDLAI-DFNETISDLSPLAGLKQLTDLDFSKDAVSD--L 313
Query: 342 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA-------AYLRS 394
LAGL+ L +L+L Q+TD L+ L +LT L +L + ++ D YL +
Sbjct: 314 SPLAGLTQLANLSLSNNQVTD--LSPLANLTQLGNLTILRNQVRDLSPLKMLKKLTYLNA 371
Query: 395 KF 396
KF
Sbjct: 372 KF 373
Score = 39.7 bits (91), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 72/165 (43%), Gaps = 34/165 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+ L ++LS +T+ L + + +NLQ L +F ISD L L GL LT L F ++
Sbjct: 251 TQLKKLNLSQLGMTNQDLKLVANMTNLQDLAIDFNETISD--LSPLAGLKQLTDLDFSKD 308
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+ AGL L L L N +T D+ PL
Sbjct: 309 ---AVSDLSPLAGLTQLANLSLSN-------------------------NQVT--DLSPL 338
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 221
+ LT L +L I ++V D ++ LK L+KLT LN + VT L
Sbjct: 339 ANLTQLGNLTILRNQVRD--LSPLKMLKKLTYLNAKFQFVTMPTL 381
>gi|85679295|gb|ABC72063.1| InlE [Listeria monocytogenes]
Length = 498
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 72/213 (33%), Positives = 107/213 (50%), Gaps = 38/213 (17%)
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
LTNL L+++ +++TD ++ L L K+T L L G P L +SA+ L
Sbjct: 94 LTNLSELELTDNQITD--VSPLANLTKITELGLSGNP-----LKDVSAIAGL-------- 138
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
SLK+L+L + +ITD + L GLTNL+ LNLD I D + L
Sbjct: 139 -------------KSLKMLHLIYTDITD--VTSLAGLTNLQELNLDINQITD--ISPLAA 181
Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
L NL+ L L TQV S L L+ L+ L +N + +SD + LA LSSL + L
Sbjct: 182 LTNLQTLSLGYTQV--SDLTPLANLSKLTILNAENSKVSD--ISPLASLSSLAEVYLREN 237
Query: 359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
QI+D ++ L ++ L+ ++L IT+ Y
Sbjct: 238 QISD--VSPLANIPNLSIIELTDQIITNQPVYY 268
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 70/122 (57%), Gaps = 17/122 (13%)
Query: 274 GLTNLESL----NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG-----LRHLSGLT 324
G+T +E + NL + D + +++ L NL + T++G SG + ++GL
Sbjct: 84 GITTIEGMQYLTNLSELELTDNQITDVSPLANLTKI----TELGLSGNPLKDVSAIAGLK 139
Query: 325 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 384
+L+ ++L +T I+D + LAGL++L+ LNLD QITD ++ L +LT L L L ++
Sbjct: 140 SLKMLHLIYTDITD--VTSLAGLTNLQELNLDINQITD--ISPLAALTNLQTLSLGYTQV 195
Query: 385 TD 386
+D
Sbjct: 196 SD 197
Score = 45.4 bits (106), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 64/262 (24%), Positives = 115/262 (43%), Gaps = 46/262 (17%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
+Q + Q +N+ + D + + L L +DVTD + D +
Sbjct: 30 VQAAVIEQPTPINEIFTDPVVADNVKTL---LEKADVTDE----------VTQTDLDSIT 76
Query: 93 QIS--DGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL-DLERCTRIHGGLV 149
Q+S G+ + G+ LT+LS +T + + L NL K+ +L +
Sbjct: 77 QLSAKSAGITTIEGMQYLTNLSELE---LTDNQITDVSPLANLTKITELGLSGNPLKDVS 133
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQ---- 204
+ GL L+ L++ + + +D+ L+GLTNL+ L + +++TD S +A L LQ
Sbjct: 134 AIAGLKSLKMLHLIYTDI---TDVTSLAGLTNLQELNLDINQITDISPLAALTNLQTLSL 190
Query: 205 ---------------KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 249
KLT+LN E V + + L++L SL + L Q+SD +
Sbjct: 191 GYTQVSDLTPLANLSKLTILNAENSKV--SDISPLASLSSLAEVYLRENQISD--VSPLA 246
Query: 250 KIGSLKVLNLGFNEITDECLVH 271
I +L ++ L IT++ + +
Sbjct: 247 NIPNLSIIELTDQIITNQPVYY 268
>gi|384251251|gb|EIE24729.1| RNI-like protein [Coccomyxa subellipsoidea C-169]
Length = 498
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 93/299 (31%), Positives = 138/299 (46%), Gaps = 56/299 (18%)
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS-KVTD---SGIAYLK 201
G V L GL +LE L K C+ ++ + L +LK+ ++CS +++D + IA L+
Sbjct: 127 GFPVMLTGLRQLELLACKGCSGLSSRPFAGIESLVSLKTCLLNCSLRMSDDTCADIASLR 186
Query: 202 GLQKLTLL--NLEGCPVTAAC-----LDSLSALGSLFYLNLN-RCQLSDDGCEKFSK--- 250
+Q L L LEGC +T AC L SL + L L+L+ +SD + ++
Sbjct: 187 QVQTLGLACSALEGC-LTPACITHAGLRSLCGMTQLTALDLSGHAAISDASMAEIARHLT 245
Query: 251 ------IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 304
+ N G +TD + L LT LES+ L +G G L L L+C
Sbjct: 246 RLIDLDLRRPACDNPGAAVVTDAGIAALASLTLLESVRLSQAQVGQAGCAALASLPRLRC 305
Query: 305 LE------LSDTQVGS-SGLRHLS--------------------GLTNLESINLS--FTG 335
LE LSDT V + LRHLS G+ L ++LS
Sbjct: 306 LELSYCDSLSDTPVCELTRLRHLSELSLAGCASVTDIAVTALVRGMPELMRLDLSACHMH 365
Query: 336 ISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTS---LTGLTHLDLFG-ARITDSGA 389
+ D SL +A L +L+ L L + +++D G+ L S LTHLD+ G RI+D+GA
Sbjct: 366 VGDISLYAIATLPNLQVLRLHSCERVSDMGIGGLCSGAAAAALTHLDVRGCERISDAGA 424
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 75/298 (25%), Positives = 133/298 (44%), Gaps = 41/298 (13%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNN----- 117
L+ + +T +GL L + L +LD + ISD + + R L+ L L RR
Sbjct: 202 LTPACITHAGLRSLCGMTQLTALDLSGHAAISDASMAEIARHLTRLIDLDLRRPACDNPG 261
Query: 118 --AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
+T G+ A A L L + L + G L L +L L + +C+ ++D+ +
Sbjct: 262 AAVVTDAGIAALASLTLLESVRLSQAQVGQAGCAALASLPRLRCLELSYCDSLSDTPVCE 321
Query: 176 LSGLTNLKSLQIS-CSKVTDSGI-AYLKGLQKLTLLNLEGCPVTAA--CLDSLSALGSLF 231
L+ L +L L ++ C+ VTD + A ++G+ +L L+L C + L +++ L +L
Sbjct: 322 LTRLRHLSELSLAGCASVTDIAVTALVRGMPELMRLDLSACHMHVGDISLYAIATLPNLQ 381
Query: 232 YLNLNRCQLSDD----GCEKFSKIGSLKVLNL-GFNEITDECLVHL-KGLTNLESLNLDS 285
L L+ C+ D G + +L L++ G I+D + + L L+ L+L+
Sbjct: 382 VLRLHSCERVSDMGIGGLCSGAAAAALTHLDVRGCERISDAGATSIGRCLKQLQYLSLEH 441
Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
C + +G G+R LSGL +LE + + TG + S +
Sbjct: 442 CHL-----------------------IGDRGIRTLSGLPHLEILRVGGTGATTDSFAQ 476
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 86/310 (27%), Positives = 135/310 (43%), Gaps = 59/310 (19%)
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGL----MKLES 159
GL++L L F +++ITA ++ L L L LE R L+ L L + L+
Sbjct: 30 GLTHL-HLCFHAHHSITAHTLQPLQQLRRLQTLVLENKARAQPTLMGLGHLGSQQIALDQ 88
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAY---LKGLQKLTLLNLEGCP- 215
L++K DS + +S L +L V G + L GL++L LL +GC
Sbjct: 89 LHVKAFVVGLDSGIDSMSALRSLHLSNCILMMVRAKGQGFPVMLTGLRQLELLACKGCSG 148
Query: 216 VTAACLDSLSALGSLFYLNLN-RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 274
+++ + +L SL LN ++SDD C + + ++ L L +
Sbjct: 149 LSSRPFAGIESLVSLKTCLLNCSLRMSDDTCADIASLRQVQTLGLACSA----------- 197
Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS-F 333
L+ C LT C + +GLR L G+T L +++LS
Sbjct: 198 --------LEGC---------LTPAC-----------ITHAGLRSLCGMTQLTALDLSGH 229
Query: 334 TGISDGSLRKLA-GLSSLKSLNLD--------ARQITDTGLAALTSLTGLTHLDLFGARI 384
ISD S+ ++A L+ L L+L A +TD G+AAL SLT L + L A++
Sbjct: 230 AAISDASMAEIARHLTRLIDLDLRRPACDNPGAAVVTDAGIAALASLTLLESVRLSQAQV 289
Query: 385 TDSGAAYLRS 394
+G A L S
Sbjct: 290 GQAGCAALAS 299
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 66/230 (28%), Positives = 104/230 (45%), Gaps = 35/230 (15%)
Query: 42 PG---VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGG 98
PG V D + +AS + L SV LS + V +G L L+ L+ ++C +SD
Sbjct: 260 PGAAVVTDAGIAALASL-TLLESVRLSQAQVGQAGCAALASLPRLRCLELSYCDSLSDTP 318
Query: 99 LEHLRGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRIHGGLVNLKGLMKL 157
+ L L +L+ LS ++T + A G+ L++LDL C +H G
Sbjct: 319 VCELTRLRHLSELSLAGCASVTDIAVTALVRGMPELMRLDLSAC-HMHVG---------- 367
Query: 158 ESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYL---KGLQKLTLLNLEG 213
D + ++ L NL+ L++ SC +V+D GI L LT L++ G
Sbjct: 368 ------------DISLYAIATLPNLQVLRLHSCERVSDMGIGGLCSGAAAAALTHLDVRG 415
Query: 214 CP-VTAACLDSL-SALGSLFYLNLNRCQL-SDDGCEKFSKIGSLKVLNLG 260
C ++ A S+ L L YL+L C L D G S + L++L +G
Sbjct: 416 CERISDAGATSIGRCLKQLQYLSLEHCHLIGDRGIRTLSGLPHLEILRVG 465
>gi|335429117|ref|ZP_08556021.1| Rab family protein [Haloplasma contractile SSD-17B]
gi|334890533|gb|EGM28798.1| Rab family protein [Haloplasma contractile SSD-17B]
Length = 1202
Score = 72.8 bits (177), Expect = 3e-10, Method: Composition-based stats.
Identities = 80/238 (33%), Positives = 122/238 (51%), Gaps = 17/238 (7%)
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTL 208
+L L +++L W +D+ L+ L+NL SL +S ++V+D + + L LQ + L
Sbjct: 848 DLSSLQNIKTLKNLWLENNNITDLSVLANLSNLDSLYLSNNQVSDLTPLINLANLQNVYL 907
Query: 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 268
N + ++ S + +L L+L+ Q++D S +L L+L N+ITD
Sbjct: 908 SNNQ----VTTLPENFSNMLNLNGLHLSGNQITD--VTPLSTAPALIELDLSNNQITD-- 959
Query: 269 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 328
L + LT L SLNL+ I D L L L L L L++ Q+ S L L GLTNL
Sbjct: 960 LTNYDLLTYLFSLNLNDNSISD--LTPLANLTKLSSLRLNNNQI--SDLTPLGGLTNLTH 1015
Query: 329 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
+ ISD L L L+ + L L+ QI+D L AL+SLT L++L + +ITD
Sbjct: 1016 LYAENNAISD--LTPLTNLNKIWYLVLNGNQISD--LTALSSLTDLSYLRMNNNQITD 1069
Score = 60.1 bits (144), Expect = 2e-06, Method: Composition-based stats.
Identities = 101/337 (29%), Positives = 156/337 (46%), Gaps = 65/337 (19%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGL----EHLRGLSNLTSLS 112
S+L S+ LS + V+D L L + +NLQ+ + +S+ + E+ + NL L
Sbjct: 878 SNLDSLYLSNNQVSD--LTPLINLANLQN------VYLSNNQVTTLPENFSNMLNLNGLH 929
Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 172
N + LI L L + T L N L L SLN+ N + SD
Sbjct: 930 LSGNQITDVTPLSTAPALIEL-DLSNNQIT----DLTNYDLLTYLFSLNL---NDNSISD 981
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
+ PL+ LT L SL+++ ++++D + L GL LT L E ++ L L+ L ++Y
Sbjct: 982 LTPLANLTKLSSLRLNNNQISD--LTPLGGLTNLTHLYAENNAISD--LTPLTNLNKIWY 1037
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
L LN Q+SD L L LT+L L +++ I D
Sbjct: 1038 LVLNGNQISD--------------------------LTALSSLTDLSYLRMNNNQITD-- 1069
Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN---LSFTGISDGSLRKLAGLSS 349
L+ L NL+ LSD Q+ ++ + LS L N SI+ L+ ISD S+ ++ +
Sbjct: 1070 ---LSPLQNLR---LSDLQLNNNLISDLSYLANSTSISKLLLNNNQISDISV--ISNFTG 1121
Query: 350 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
L++L LD I+D L+AL+S T L L L I+D
Sbjct: 1122 LRTLELDDNMISD--LSALSSQTNLELLYLRNNLISD 1156
>gi|428320680|ref|YP_007118562.1| leucine-rich repeat-containing protein [Oscillatoria nigro-viridis
PCC 7112]
gi|428244360|gb|AFZ10146.1| leucine-rich repeat-containing protein [Oscillatoria nigro-viridis
PCC 7112]
Length = 360
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 81/219 (36%), Positives = 114/219 (52%), Gaps = 16/219 (7%)
Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
SD+ PL LTNLK+L I +++ D I+ L L LT+L L+ ++ + L+ L L
Sbjct: 104 SDIAPLQSLTNLKTLVIDVNQILD--ISPLSSLINLTVLVLDTNQISD--ISPLAGLTDL 159
Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
L L ++SD K + +L L L N+I+D + L+ LT L++L L + I D
Sbjct: 160 TALVLFDNKISDITPVK--NLTNLNALILYNNQISD--IAPLENLTELQTLYLYNNKISD 215
Query: 291 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 350
+ L L NL L L ++ S L L LTNL + L ISD S L L++L
Sbjct: 216 --ITPLASLKNLTTLFLFGNEI--SDLTPLEALTNLNKLVLFQNKISDIS--PLTSLTNL 269
Query: 351 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 389
LNL QI+D ++ L SLT LT L LF I+DS A
Sbjct: 270 IELNLGNNQISD--ISPLKSLTNLTELYLFNNPISDSSA 306
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 94/187 (50%), Gaps = 22/187 (11%)
Query: 72 SGLIHLKDCSNLQSLDFNFCIQISD-GGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL 130
S + +K+ +NL +L + QISD LE+L L L + NN I+ + A L
Sbjct: 170 SDITPVKNLTNLNALIL-YNNQISDIAPLENLTELQTL----YLYNNKIS--DITPLASL 222
Query: 131 INLVKLDLERCTRIHGGLVNLKGLMKLESLN--IKWCNCITDSDMKPLSGLTNLKSLQIS 188
NL L L + +L L L +LN + + N I SD+ PL+ LTNL L +
Sbjct: 223 KNLTTLFL-----FGNEISDLTPLEALTNLNKLVLFQNKI--SDISPLTSLTNLIELNLG 275
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD-DGCEK 247
++++D I+ LK L LT L L P++ + +L AL +LF L+L Q+SD E
Sbjct: 276 NNQISD--ISPLKSLTNLTELYLFNNPISDSS--ALQALNNLFLLDLYNNQISDISSLES 331
Query: 248 FSKIGSL 254
K+ +L
Sbjct: 332 LHKLTTL 338
>gi|428225640|ref|YP_007109737.1| hypothetical protein GEI7407_2206 [Geitlerinema sp. PCC 7407]
gi|427985541|gb|AFY66685.1| leucine-rich repeat-containing protein [Geitlerinema sp. PCC 7407]
Length = 504
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 115/395 (29%), Positives = 156/395 (39%), Gaps = 103/395 (26%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSL-----SFRRNNAITAQGMKAFAGLI 131
L D S L SL + + + L LR LS+L +L S+ +T G +
Sbjct: 86 LTDLSPLVSLPQLTGLSLYNSSLSDLRPLSSLPNLRALDLSYANLTDVTVLGTLGTLQAL 145
Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 191
NL R + L L+GL +L +L + W T +D+ L L NL L +S S+
Sbjct: 146 NL------RGNPVRD-LRPLQGLQRLHTLTLGWS---TVTDLSTLPTLPNLHQLDLSGSQ 195
Query: 192 VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL-------------------GSLFY 232
V D I L +L LNL +++ L ++ +L G L
Sbjct: 196 VGD--IRSLAPQPRLETLNLSANRISSIALPAMPSLRSLDLENNALTRVTIPASMGKLES 253
Query: 233 LNL-----------------NRCQLSDDGCEKFSKIGS---LKVLNLGFNEITD------ 266
LNL R L+ + + I S L+ L+L FN+ITD
Sbjct: 254 LNLANNAIASLQFGGQIPALRRLSLASNQLTEVRAIASQPQLQELDLSFNQITDLGPLAS 313
Query: 267 ---------------ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 311
L L GLT L++L+L I D + L GL NL+ L LS Q
Sbjct: 314 LGAIRVLKISGNRPISDLRPLAGLTTLQALDLSEASIRD--ITPLRGLRNLETLVLSGNQ 371
Query: 312 VGSSGLRHLSGLTNLESINLSFTGISD--------------------GSLRKLAGLSSLK 351
+ L LSGL L + + ISD S+R LA L LK
Sbjct: 372 IQQ--LESLSGLNRLSYLAIGGNQISDLRAIAALYSLQTLMLDSNRITSVRPLASLGQLK 429
Query: 352 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
L L QITD A L +LTGLT L L RIT+
Sbjct: 430 VLTLGNNQITDP--APLAALTGLTVLQLPQNRITN 462
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 79/278 (28%), Positives = 123/278 (44%), Gaps = 48/278 (17%)
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
GL +L L+ L L + SD++PLS L NL++L +S + +TD + L L L
Sbjct: 85 GLTDLSPLVSLPQLTGLSLYNSSLSDLRPLSSLPNLRALDLSYANLTD--VTVLGTLGTL 142
Query: 207 TLLNLEGCPV--------------------TAACLDSLSALGSLFYLNLNRCQLSDDGCE 246
LNL G PV T L +L L +L L+L+ Q+ D
Sbjct: 143 QALNLRGNPVRDLRPLQGLQRLHTLTLGWSTVTDLSTLPTLPNLHQLDLSGSQVGD--IR 200
Query: 247 KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN--------------LDSCGIGDEG 292
+ L+ LNL N I+ L + L +L+ N L+S + +
Sbjct: 201 SLAPQPRLETLNLSANRISSIALPAMPSLRSLDLENNALTRVTIPASMGKLESLNLANNA 260
Query: 293 LVNLT---GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 349
+ +L + L+ L L+ Q+ + +R ++ L+ ++LSF I+D L LA L +
Sbjct: 261 IASLQFGGQIPALRRLSLASNQL--TEVRAIASQPQLQELDLSFNQITD--LGPLASLGA 316
Query: 350 LKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGARITD 386
++ L + R I+D L L LT L LDL A I D
Sbjct: 317 IRVLKISGNRPISD--LRPLAGLTTLQALDLSEASIRD 352
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 86/281 (30%), Positives = 121/281 (43%), Gaps = 56/281 (19%)
Query: 75 IHLKDCSNLQSLDFN------FCIQISDGGLEHLRGLSN-LTSLSF-------RR----N 116
I L +L+SLD I S G LE L +N + SL F RR +
Sbjct: 221 IALPAMPSLRSLDLENNALTRVTIPASMGKLESLNLANNAIASLQFGGQIPALRRLSLAS 280
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI-KWCNCITDSDMKP 175
N +T ++A A L +LDL + +L L L ++ + K SD++P
Sbjct: 281 NQLTE--VRAIASQPQLQELDLS-----FNQITDLGPLASLGAIRVLKISGNRPISDLRP 333
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
L+GLT L++L +S + + D I L+GL+ L L L G + L+SLS L L YL +
Sbjct: 334 LAGLTTLQALDLSEASIRD--ITPLRGLRNLETLVLSGNQIQQ--LESLSGLNRLSYLAI 389
Query: 236 NRCQLSD--------------------DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 275
Q+SD + +G LKVL LG N+ITD L L
Sbjct: 390 GGNQISDLRAIAALYSLQTLMLDSNRITSVRPLASLGQLKVLTLGNNQITDPA--PLAAL 447
Query: 276 TNLESLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSS 315
T L L L I + + L LT NL+ L L + V
Sbjct: 448 TGLTVLQLPQNRITNFDALATLT---NLRILGLWENPVSPP 485
>gi|290971663|ref|XP_002668605.1| predicted protein [Naegleria gruberi]
gi|284082078|gb|EFC35861.1| predicted protein [Naegleria gruberi]
Length = 968
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 101/205 (49%), Gaps = 2/205 (0%)
Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
F+ LI+ K ++E + G ++ + +L SL+I N I D K +S + L SL
Sbjct: 758 FSKLISEEKEEMEHSIGVEGA-KSISEMKQLTSLDIG-ENQIGDEGAKSISEMKQLTSLT 815
Query: 187 ISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE 246
IS + + D G+ ++ +++LT N+ A +S + L L+++ ++ D+G +
Sbjct: 816 ISGNSIGDEGVKSIRKMKQLTSFNISYNETGVAGAKFISEMKQLTSLDISYNEIGDEGAK 875
Query: 247 KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 306
S++ L L + N I E + + L L++ IGDEG +++ L LK L
Sbjct: 876 SISELKQLTSLTISGNSIGVEGAKSISEMKQLTLLDIGENQIGDEGAKSISELKQLKSLT 935
Query: 307 LSDTQVGSSGLRHLSGLTNLESINL 331
+S+ Q+G G + + G+ S L
Sbjct: 936 ISENQIGDEGAKFIIGMKQYGSFKL 960
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 75/147 (51%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
+G + S++ L L++G N+I DE + + L SL + IGDEG+ ++ + L
Sbjct: 776 EGAKSISEMKQLTSLDIGENQIGDEGAKSISEMKQLTSLTISGNSIGDEGVKSIRKMKQL 835
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
+S + G +G + +S + L S+++S+ I D + ++ L L SL + I
Sbjct: 836 TSFNISYNETGVAGAKFISEMKQLTSLDISYNEIGDEGAKSISELKQLTSLTISGNSIGV 895
Query: 363 TGLAALTSLTGLTHLDLFGARITDSGA 389
G +++ + LT LD+ +I D GA
Sbjct: 896 EGAKSISEMKQLTLLDIGENQIGDEGA 922
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 82/170 (48%)
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282
S+S + L L++ Q+ D+G + S++ L L + N I DE + ++ + L S N
Sbjct: 780 SISEMKQLTSLDIGENQIGDEGAKSISEMKQLTSLTISGNSIGDEGVKSIRKMKQLTSFN 839
Query: 283 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 342
+ G G ++ + L L++S ++G G + +S L L S+ +S I +
Sbjct: 840 ISYNETGVAGAKFISEMKQLTSLDISYNEIGDEGAKSISELKQLTSLTISGNSIGVEGAK 899
Query: 343 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
++ + L L++ QI D G +++ L L L + +I D GA ++
Sbjct: 900 SISEMKQLTLLDIGENQIGDEGAKSISELKQLKSLTISENQIGDEGAKFI 949
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 83/191 (43%), Gaps = 24/191 (12%)
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
K +S + L SL I +++ D G + +++LT L + G + + S+ + L
Sbjct: 779 KSISEMKQLTSLDIGENQIGDEGAKSISEMKQLTSLTISGNSIGDEGVKSIRKMKQLTSF 838
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
N++ + G + S++ L L++ +NEI DE + L L SL + IG EG
Sbjct: 839 NISYNETGVAGAKFISEMKQLTSLDISYNEIGDEGAKSISELKQLTSLTISGNSIGVEGA 898
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
+++ + L L++ + Q+G G + +S L LKSL
Sbjct: 899 KSISEMKQLTLLDIGENQIGDEGAKSISEL------------------------KQLKSL 934
Query: 354 NLDARQITDTG 364
+ QI D G
Sbjct: 935 TISENQIGDEG 945
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 50/102 (49%)
Query: 288 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 347
IG EG +++ + L L++ + Q+G G + +S + L S+ +S I D ++ + +
Sbjct: 773 IGVEGAKSISEMKQLTSLDIGENQIGDEGAKSISEMKQLTSLTISGNSIGDEGVKSIRKM 832
Query: 348 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 389
L S N+ + G ++ + LT LD+ I D GA
Sbjct: 833 KQLTSFNISYNETGVAGAKFISEMKQLTSLDISYNEIGDEGA 874
Score = 44.7 bits (104), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 79/163 (48%), Gaps = 8/163 (4%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L S+ +SG+ + D G+ ++ L S + ++ + G + + + LTSL
Sbjct: 806 SEMKQLTSLTISGNSIGDEGVKSIRKMKQLTSFNISYN-ETGVAGAKFISEMKQLTSLDI 864
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
N I +G K+ + L L L + + G ++ + +L L+I N I D
Sbjct: 865 SYNE-IGDEGAKSISELKQLTSLTISGNSIGVEGAKSISEMKQLTLLDIG-ENQIGDEGA 922
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQ-----KLTLLNL 211
K +S L LKSL IS +++ D G ++ G++ KL L+NL
Sbjct: 923 KSISELKQLKSLTISENQIGDEGAKFIIGMKQYGSFKLRLVNL 965
>gi|320165719|gb|EFW42618.1| non-receptor protein kinase [Capsaspora owczarzaki ATCC 30864]
Length = 978
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 70/234 (29%), Positives = 100/234 (42%), Gaps = 24/234 (10%)
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
+GLT L+ L + ++++ L L L L G +T + S L L L L
Sbjct: 19 FTGLTALQILSLFNNQISSVAANAFTSLTALVQLQLYGNQITTIPASAFSGLSKLSLLQL 78
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
N LS F+ + +L L+L N+IT GLT L++L L++ I
Sbjct: 79 NNNWLSAIPTSAFTGLTALTQLSLYGNQITTISASAFAGLTALQALYLNNNTITTIAANA 138
Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL-----------SFTG--------- 335
GL L L+LSD+Q+ S S L L +NL +FTG
Sbjct: 139 FAGLTALNWLDLSDSQITSIPANVFSSLPALAQLNLYNNWLSAVPTSAFTGLTALTQLTM 198
Query: 336 ----ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
I+ S GL++L L L + QIT +A T LT L L L+G +IT
Sbjct: 199 YGNRITTISANAFTGLNALAQLFLQSNQITTISASAFTGLTALKQLYLYGNQIT 252
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 74/253 (29%), Positives = 108/253 (42%), Gaps = 10/253 (3%)
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL--ERCTRIHGGLVNLKGLMKLE- 158
GL+ L LS NN I++ AF L LV+L L + T I GL KL
Sbjct: 19 FTGLTALQILSLF-NNQISSVAANAFTSLTALVQLQLYGNQITTIPASA--FSGLSKLSL 75
Query: 159 -SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
LN W + I S +GLT L L + +++T + GL L L L +T
Sbjct: 76 LQLNNNWLSAIPTSA---FTGLTALTQLSLYGNQITTISASAFAGLTALQALYLNNNTIT 132
Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 277
++ + L +L +L+L+ Q++ FS + +L LNL N ++ GLT
Sbjct: 133 TIAANAFAGLTALNWLDLSDSQITSIPANVFSSLPALAQLNLYNNWLSAVPTSAFTGLTA 192
Query: 278 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 337
L L + I TGL L L L Q+ + +GLT L+ + L I+
Sbjct: 193 LTQLTMYGNRITTISANAFTGLNALAQLFLQSNQITTISASAFTGLTALKQLYLYGNQIT 252
Query: 338 DGSLRKLAGLSSL 350
S AGL+ L
Sbjct: 253 TISANAFAGLTLL 265
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 66/233 (28%), Positives = 91/233 (39%), Gaps = 2/233 (0%)
Query: 90 FCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLV 149
F QIS L+ L L N IT AF+GL L L L
Sbjct: 31 FNNQISSVAANAFTSLTALVQLQLY-GNQITTIPASAFSGLSKLSLLQLNNNWLSAIPTS 89
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL 209
GL L L++ + N IT +GLT L++L ++ + +T GL L L
Sbjct: 90 AFTGLTALTQLSL-YGNQITTISASAFAGLTALQALYLNNNTITTIAANAFAGLTALNWL 148
Query: 210 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
+L +T+ + S+L +L LNL LS F+ + +L L + N IT
Sbjct: 149 DLSDSQITSIPANVFSSLPALAQLNLYNNWLSAVPTSAFTGLTALTQLTMYGNRITTISA 208
Query: 270 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 322
GL L L L S I TGL LK L L Q+ + +G
Sbjct: 209 NAFTGLNALAQLFLQSNQITTISASAFTGLTALKQLYLYGNQITTISANAFAG 261
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 73/158 (46%)
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282
+ + L +L L+L Q+S F+ + +L L L N+IT GL+ L L
Sbjct: 18 AFTGLTALQILSLFNNQISSVAANAFTSLTALVQLQLYGNQITTIPASAFSGLSKLSLLQ 77
Query: 283 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 342
L++ + TGL L L L Q+ + +GLT L+++ L+ I+ +
Sbjct: 78 LNNNWLSAIPTSAFTGLTALTQLSLYGNQITTISASAFAGLTALQALYLNNNTITTIAAN 137
Query: 343 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 380
AGL++L L+L QIT +SL L L+L+
Sbjct: 138 AFAGLTALNWLDLSDSQITSIPANVFSSLPALAQLNLY 175
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 45/95 (47%)
Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355
TGL L+ L L + Q+ S + LT L + L I+ +GLS L L L
Sbjct: 19 FTGLTALQILSLFNNQISSVAANAFTSLTALVQLQLYGNQITTIPASAFSGLSKLSLLQL 78
Query: 356 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 390
+ ++ +A T LT LT L L+G +IT A+
Sbjct: 79 NNNWLSAIPTSAFTGLTALTQLSLYGNQITTISAS 113
>gi|389592901|ref|XP_001681716.2| putative surface antigen protein [Leishmania major strain Friedlin]
gi|321399718|emb|CAJ02964.2| putative surface antigen protein [Leishmania major strain Friedlin]
Length = 560
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 105/400 (26%), Positives = 170/400 (42%), Gaps = 38/400 (9%)
Query: 6 ISQQIF---NELVYSRCLTEVSLEA-FRDCALQDLCLGQYP----GVNDKWMDVIASQGS 57
+S +F N Y+ L E+ + +R ++DL P + D W SQ
Sbjct: 78 VSVNVFVGLNVSTYAGTLPEIPVNVDYRHVMIRDLGFWNMPLLSGTLPDSW-----SQLG 132
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRG-LSNLTSLSFRR- 115
LLSV LSG V+ + L+ L C ++ G L L L NL L R+
Sbjct: 133 GLLSVTLSGCGVSGTLPASWGLMVRLRELTVRDCRHLT-GSLPSLWSWLPNLQKLVLRQL 191
Query: 116 --NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLV-NLKGLMKLESLNIKWCNCITDSD 172
+ + A+ ++ + +L++L++ I G L + L +LN++
Sbjct: 192 QLSGTLPAE----WSRVTSLLELEIVAAGDITGTLPPEWSSIKSLRTLNLE--GTQVSGT 245
Query: 173 MKP-LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
+ P S + +L +L++ ++V+ S + L LNLEG V+ S + SL
Sbjct: 246 LPPGWSEMKSLTNLELEGTQVSGSLPPQWVSMASLRTLNLEGTQVSGTLPPGWSEMKSLT 305
Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT---DECLVHLKGLTNLESLNLDSCGI 288
L L Q+S +S I SL+ LNL +++ +K LTNLE G
Sbjct: 306 NLELEGTQVSGTLPPGWSSIKSLRTLNLEGTQVSGTLPPGWSEMKSLTNLELEGTQVSGT 365
Query: 289 GDEGLVNLTGLCNLKCLELSDTQVG---SSGLRHLSGLTNLESINLSFTGISDGSLRKLA 345
G + +L+ L L TQV G + LTNL L T +S +
Sbjct: 366 LPPGWSEMK---SLRTLNLEGTQVSGALPPGWGEMKSLTNL---YLEGTQLSGSLPTEWR 419
Query: 346 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
G+ SL +L L+ Q++ + +SLT L LDL G +++
Sbjct: 420 GMKSLTNLYLEGTQVSGSLPPQWSSLTSLRTLDLEGTQVS 459
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 67/308 (21%), Positives = 139/308 (45%), Gaps = 14/308 (4%)
Query: 54 SQGSSLLSVDL-SGSDVTDSGLIHLKDCSNLQSLDFNFCIQIS---DGGLEHLRGLSNLT 109
S+ +SLL +++ + D+T + +L++L+ Q+S G ++ L+NL
Sbjct: 202 SRVTSLLELEIVAAGDITGTLPPEWSSIKSLRTLNLE-GTQVSGTLPPGWSEMKSLTNLE 260
Query: 110 SLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL-NIKWCNCI 168
+ + ++ Q + + +L L+LE T++ G L G +++SL N++
Sbjct: 261 LEGTQVSGSLPPQ----WVSMASLRTLNLE-GTQVSGTLP--PGWSEMKSLTNLELEGTQ 313
Query: 169 TDSDMKP-LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
+ P S + +L++L + ++V+ + ++ LT L LEG V+ S +
Sbjct: 314 VSGTLPPGWSSIKSLRTLNLEGTQVSGTLPPGWSEMKSLTNLELEGTQVSGTLPPGWSEM 373
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
SL LNL Q+S + ++ SL L L +++ +G+ +L +L L+
Sbjct: 374 KSLRTLNLEGTQVSGALPPGWGEMKSLTNLYLEGTQLSGSLPTEWRGMKSLTNLYLEGTQ 433
Query: 288 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 347
+ + L +L+ L+L TQV S + + E++ L +S + + +
Sbjct: 434 VSGSLPPQWSSLTSLRTLDLEGTQVSGRLPPEWSRMLSAENLQLEHCDLSGSLPPEWSAM 493
Query: 348 SSLKSLNL 355
L+ + L
Sbjct: 494 PRLRLVGL 501
Score = 38.9 bits (89), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 66/298 (22%), Positives = 127/298 (42%), Gaps = 16/298 (5%)
Query: 58 SLLSVDLSGSDVT---DSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
SL +++L G+ V+ G +K +NL+ L+ Q+S +++L +L+
Sbjct: 231 SLRTLNLEGTQVSGTLPPGWSEMKSLTNLE-LE---GTQVSGSLPPQWVSMASLRTLNLE 286
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN-LKGLMKLESLNIKWCNCITDSDM 173
++ ++ + +L L+LE T++ G L + L +LN++ +
Sbjct: 287 -GTQVSGTLPPGWSEMKSLTNLELE-GTQVSGTLPPGWSSIKSLRTLNLE--GTQVSGTL 342
Query: 174 KP-LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
P S + +L +L++ ++V+ + ++ L LNLEG V+ A + SL
Sbjct: 343 PPGWSEMKSLTNLELEGTQVSGTLPPGWSEMKSLRTLNLEGTQVSGALPPGWGEMKSLTN 402
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
L L QLS ++ + SL L L +++ LT+L +L+L+ +
Sbjct: 403 LYLEGTQLSGSLPTEWRGMKSLTNLYLEGTQVSGSLPPQWSSLTSLRTLDLEGTQVSGRL 462
Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS---FTGISDGSLRKLAGL 347
+ + + + L+L + S S + L + L F G S K AGL
Sbjct: 463 PPEWSRMLSAENLQLEHCDLSGSLPPEWSAMPRLRLVGLRGNHFCGCVPDSWGKNAGL 520
>gi|290991352|ref|XP_002678299.1| predicted protein [Naegleria gruberi]
gi|284091911|gb|EFC45555.1| predicted protein [Naegleria gruberi]
Length = 383
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 92/326 (28%), Positives = 147/326 (45%), Gaps = 48/326 (14%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
NL+SLD +I +E++ L NLT+ S R +N I + ++ + L L+
Sbjct: 64 PNLKSLDVGLVQEICYENVEYISELQNLTTFSIRYSN-IGRKHLQIIGEMSQLTDLN--- 119
Query: 141 CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAY 199
I G +N + P+ LT + SL + CS + D GI
Sbjct: 120 ---ISGNPIN---------------------SLLPIRPLTRITSLSAADCSFLGDDGIYP 155
Query: 200 L---KGLQKLTL----LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG 252
+ KGLQKL L + EGC + +LS +L+LN ++ D ++ SK+
Sbjct: 156 IVNFKGLQKLNLSSNGITWEGCMFISEKFPNLS------HLSLNETRICDGAIKRLSKMK 209
Query: 253 SLKVLNLGFN-EITDECLVHL-KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 310
L L++G N +IT E + + LTNL LN+ S + DEGL+ L L+ L +
Sbjct: 210 QLTYLDVGNNAKITMEGIKLISNNLTNLTHLNISSNNVTDEGLMMACDLPKLQELFVGHN 269
Query: 311 QVGSSGLRHLSGL--TNLESINLSFTGISDGSLRKL-AGLSSLKSLNLDARQITDTGLAA 367
Q+ SG+ S L+ ++LS I+ + L L++LK L L ITD +
Sbjct: 270 QITDSGINEFSEKIGNKLKILSLSRNNITSLCTQYLCTKLTNLKKLYLAGVSITDEDVKL 329
Query: 368 LTS-LTGLTHLDLFGARITDSGAAYL 392
+ + L +LD+ +TD Y+
Sbjct: 330 ICQCMKLLIYLDVSWNNVTDKSLEYV 355
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 82/294 (27%), Positives = 135/294 (45%), Gaps = 19/294 (6%)
Query: 109 TSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCI 168
TSLS+R +A ++ LI V ++E LV+ L L+SL++ I
Sbjct: 29 TSLSYR--DACLIAKFESLEELIGEVGDEME-------ALVDY--LPNLKSLDVGLVQEI 77
Query: 169 TDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG 228
+++ +S L NL + I S + + + + +LT LN+ G P+ + L + L
Sbjct: 78 CYENVEYISELQNLTTFSIRYSNIGRKHLQIIGEMSQLTDLNISGNPINS--LLPIRPLT 135
Query: 229 SLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGFNEITDE-CLVHLKGLTNLESLNLDSC 286
+ L+ C L DDG L+ LNL N IT E C+ + NL L+L+
Sbjct: 136 RITSLSAADCSFLGDDGIYPIVNFKGLQKLNLSSNGITWEGCMFISEKFPNLSHLSLNET 195
Query: 287 GIGDEGLVNLTGLCNLKCLEL-SDTQVGSSGLRHLSG-LTNLESINLSFTGISDGSLRKL 344
I D + L+ + L L++ ++ ++ G++ +S LTNL +N+S ++D L
Sbjct: 196 RICDGAIKRLSKMKQLTYLDVGNNAKITMEGIKLISNNLTNLTHLNISSNNVTDEGLMMA 255
Query: 345 AGLSSLKSLNLDARQITDTGLAALTSLTG--LTHLDLFGARITDSGAAYLRSKF 396
L L+ L + QITD+G+ + G L L L IT YL +K
Sbjct: 256 CDLPKLQELFVGHNQITDSGINEFSEKIGNKLKILSLSRNNITSLCTQYLCTKL 309
>gi|149279200|ref|ZP_01885332.1| hypothetical protein PBAL39_12805 [Pedobacter sp. BAL39]
gi|149229962|gb|EDM35349.1| hypothetical protein PBAL39_12805 [Pedobacter sp. BAL39]
Length = 1105
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 81/305 (26%), Positives = 128/305 (41%), Gaps = 54/305 (17%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCS-NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++ +++S SD+ GL C+ NLQ L +F + + D LE RG +L L+ RN
Sbjct: 605 QIVQIEISRSDLEGHGLAFFSSCAINLQILQLSFNM-LEDKYLEVFRGAESLRYLNLDRN 663
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
++ F GL NL LDL N ITD ++K L
Sbjct: 664 R-FNGSCLRNFVGL-NLEHLDLS-------------------------YNEITDDNLKLL 696
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NLKS+ + +++ G D + L +L L
Sbjct: 697 GSCPNLKSINLHLNELEGHG------------------------FDIFESTTELEWLTLG 732
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
+L+DD FS+ L L L N+ V+LK +L++L+L I + L++
Sbjct: 733 SNRLTDDCLRYFSRNLDLTALYLNENQFNGSGFVYLKNAKSLDTLSLSDNPIDSQYLIHF 792
Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
L L LEL + ++G GL++ + LE I L TGI+D L+ L + LK ++
Sbjct: 793 RNLDKLNYLELGNIRLG-DGLKYFTNSYLLEDIRLYNTGITDQDLQSLVFGNKLKRIDFS 851
Query: 357 ARQIT 361
+T
Sbjct: 852 GNALT 856
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 97/207 (46%), Gaps = 2/207 (0%)
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
NL+ LQ+S + + D + +G + L LNL+ +CL + L +L +L+L+ ++
Sbjct: 630 NLQILQLSFNMLEDKYLEVFRGAESLRYLNLDRNRFNGSCLRNFVGL-NLEHLDLSYNEI 688
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
+DD + +LK +NL NE+ + T LE L L S + D+ L +
Sbjct: 689 TDDNLKLLGSCPNLKSINLHLNELEGHGFDIFESTTELEWLTLGSNRLTDDCLRYFSRNL 748
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
+L L L++ Q SG +L +L++++LS I L L L L L ++
Sbjct: 749 DLTALYLNENQFNGSGFVYLKNAKSLDTLSLSDNPIDSQYLIHFRNLDKLNYLELGNIRL 808
Query: 361 TDTGLAALTSLTGLTHLDLFGARITDS 387
D GL T+ L + L+ ITD
Sbjct: 809 GD-GLKYFTNSYLLEDIRLYNTGITDQ 834
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 98/378 (25%), Positives = 146/378 (38%), Gaps = 84/378 (22%)
Query: 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNF------------------------- 90
G +L +DLS +++TD L L C NL+S++ +
Sbjct: 675 GLNLEHLDLSYNEITDDNLKLLGSCPNLKSINLHLNELEGHGFDIFESTTELEWLTLGSN 734
Query: 91 -----CI-----------------QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
C+ Q + G +L+ +L +LS +N I +Q + F
Sbjct: 735 RLTDDCLRYFSRNLDLTALYLNENQFNGSGFVYLKNAKSLDTLSL-SDNPIDSQYLIHFR 793
Query: 129 GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
L L L+L R+ GL LE + + + ITD D++ L LK + S
Sbjct: 794 NLDKLNYLELGNI-RLGDGLKYFTNSYLLEDIRL-YNTGITDQDLQSLVFGNKLKRIDFS 851
Query: 189 CSKVTDSGIAYLKG----LQKLTL---------------------LNLEGCPVTAACLDS 223
+ +T +G L++L + +NL + L+
Sbjct: 852 GNALTGEVFDIFRGKLEFLERLDINDNQIGSSLPDIFKDSHHINEVNLSNTQINPGHLNY 911
Query: 224 LS----ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL-TNL 278
S L L+ NLN L D+ F LK LNL N T L+ LK L T L
Sbjct: 912 FSHCAATLTRLYMSNLN---LQDNDLSVFGGFQQLKDLNLSGNRFTGSFLIQLKHLATEL 968
Query: 279 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL-SGLTNLESINLSFTGIS 337
E LNL + + D+ L L +L L LS V GL +L + + LE +NLS IS
Sbjct: 969 EELNLANNQLNDQNLYYLEAFSSLNTLNLSQNLVEGDGLINLRTSASVLEVLNLSGNSIS 1028
Query: 338 DGSLRKLAGLSSLKSLNL 355
D L+ L LK + L
Sbjct: 1029 DDDLQFLEHARFLKEVRL 1046
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 75/163 (46%), Gaps = 2/163 (1%)
Query: 233 LNLNRCQLSDDGCEKFSKIG-SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
+ ++R L G FS +L++L L FN + D+ L +G +L LNLD
Sbjct: 609 IEISRSDLEGHGLAFFSSCAINLQILQLSFNMLEDKYLEVFRGAESLRYLNLDRNRFNGS 668
Query: 292 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 351
L N GL NL+ L+LS ++ L+ L NL+SINL + + L+
Sbjct: 669 CLRNFVGL-NLEHLDLSYNEITDDNLKLLGSCPNLKSINLHLNELEGHGFDIFESTTELE 727
Query: 352 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRS 394
L L + ++TD L + LT L L + SG YL++
Sbjct: 728 WLTLGSNRLTDDCLRYFSRNLDLTALYLNENQFNGSGFVYLKN 770
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 86/330 (26%), Positives = 124/330 (37%), Gaps = 59/330 (17%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
Q + G +L+ +L +LS +N I +Q + F L L L+L R+ GL
Sbjct: 759 QFNGSGFVYLKNAKSLDTLSLS-DNPIDSQYLIHFRNLDKLNYLELGNI-RLGDGLKYFT 816
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKG----LQKLTL 208
LE + + + ITD D++ L LK + S + +T +G L++L +
Sbjct: 817 NSYLLEDIRL-YNTGITDQDLQSLVFGNKLKRIDFSGNALTGEVFDIFRGKLEFLERLDI 875
Query: 209 ---------------------LNLEGCPVTAACLDSLS----ALGSLFYLNLNRCQLSDD 243
+NL + L+ S L L+ NLN L D+
Sbjct: 876 NDNQIGSSLPDIFKDSHHINEVNLSNTQINPGHLNYFSHCAATLTRLYMSNLN---LQDN 932
Query: 244 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGL-TNLESLNLDSCGIGDEGLVNLTGLCNL 302
F LK LNL N T L+ LK L T LE LNL + + D+ L L +L
Sbjct: 933 DLSVFGGFQQLKDLNLSGNRFTGSFLIQLKHLATELEELNLANNQLNDQNLYYLEAFSSL 992
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L LS V GL INL + S L+ LNL I+D
Sbjct: 993 NTLNLSQNLVEGDGL-----------INLRTSA------------SVLEVLNLSGNSISD 1029
Query: 363 TGLAALTSLTGLTHLDLFGARITDSGAAYL 392
L L L + L + S +L
Sbjct: 1030 DDLQFLEHARFLKEVRLADNKFNGSCVKFL 1059
Score = 42.7 bits (99), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 85/201 (42%), Gaps = 27/201 (13%)
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
L L +S + D+ ++ G Q+L LNL G T + L L L +
Sbjct: 919 LTRLYMSNLNLQDNDLSVFGGFQQLKDLNLSGNRFTGSFLIQLKHLAT------------ 966
Query: 242 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL-TGLC 300
L+ LNL N++ D+ L +L+ ++L +LNL + +GL+NL T
Sbjct: 967 -----------ELEELNLANNQLNDQNLYYLEAFSSLNTLNLSQNLVEGDGLINLRTSAS 1015
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK--LAGLSSLKSLNLDAR 358
L+ L LS + L+ L L+ + L+ +GS K L ++L++L L
Sbjct: 1016 VLEVLNLSGNSISDDDLQFLEHARFLKEVRLADNKF-NGSCVKFLLNSAATLETLILSGN 1074
Query: 359 QITDTGLAALTSLTGLTHLDL 379
I L + T L D+
Sbjct: 1075 PIVPEELLIVGEFTELEDTDI 1095
>gi|124002318|ref|ZP_01687171.1| leucine-rich protein [Microscilla marina ATCC 23134]
gi|123992147|gb|EAY31515.1| leucine-rich protein [Microscilla marina ATCC 23134]
Length = 1282
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 105/339 (30%), Positives = 152/339 (44%), Gaps = 44/339 (12%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
L ++L +D+ + +L L+SL+ F S LE+L L+ LT LS N
Sbjct: 217 PRLKQLELEENDI--KKIENLHHLPQLKSLNLRFN---SFEKLENLDALTELTELSLGYN 271
Query: 117 NAITAQGMKA----------FAGLINLVKLD----LERCTRIHGGLVNLKGLMKLESLNI 162
+G++ F + L LD LE+ H G+ ++ L KL L
Sbjct: 272 GISKIEGLEKLTKLKMLGLMFNRVTKLENLDTLTELEKLWMNHTGIKKIENLDKLTKLTH 331
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA-ACL 221
C + ++ L LT L SL + +K+ S I L+ L LT L ++G V L
Sbjct: 332 LSLMCSKVTKIENLEALTQLTSLSLHATKI--SKIENLEALTNLTKLRVDGNKVAKIENL 389
Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIG---SLKVLNLGFNEITDECLVHLKGLTNL 278
D+L+ L L L + K +G L+ L+LG IT + +L+GL L
Sbjct: 390 DNLTQLDDLM--------LGGNPISKIENLGHLIKLRKLDLGGLAITK--IENLEGLRTL 439
Query: 279 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS-SGLRHLSGLTNLESINLSFTGIS 337
E L+L I E + NL GL L+ LEL T+V L HL LT L+ LS T I+
Sbjct: 440 EQLDLGGSQI--ETIENLEGLTGLQKLELRATKVSKIENLNHLPALTELD---LSETAIT 494
Query: 338 DGSLRKLAGLSSLKSLNLDARQITD-TGLAALTSLTGLT 375
+ L GL LK L+L +IT LA L+ L L+
Sbjct: 495 --KIEGLTGLEGLKELSLSKNKITKIENLAGLSKLEKLS 531
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 94/333 (28%), Positives = 153/333 (45%), Gaps = 51/333 (15%)
Query: 80 CSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS--FRRNNAITAQGMKAFAGLINLVKLD 137
NL++L +++ + + L NLT L N I+ ++ LI L KLD
Sbjct: 364 IENLEALTNLTKLRVDGNKVAKIENLDNLTQLDDLMLGGNPISK--IENLGHLIKLRKLD 421
Query: 138 LERCTRIHGGLV-----NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKV 192
L GGL NL+GL LE L++ T ++ L GLT L+ L++ +KV
Sbjct: 422 L-------GGLAITKIENLEGLRTLEQLDLGGSQIET---IENLEGLTGLQKLELRATKV 471
Query: 193 TDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD----DGCEKF 248
S I L L LT L+L +T ++ L+ L L L+L++ +++ G K
Sbjct: 472 --SKIENLNHLPALTELDLSETAITK--IEGLTGLEGLKELSLSKNKITKIENLAGLSKL 527
Query: 249 SKI--------------GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
K+ G K+ L + ECL +L+GL L+ L+L++ I +
Sbjct: 528 EKLSLCASNLSKIENLTGLPKLRELCLEKNAIECLENLRGLPALKELDLNNNQITH---I 584
Query: 295 NLTGL-CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
L L L LS Q+ + HL+G+T L ++LS IS + L +L++L
Sbjct: 585 QPNALPTQLAELNLSQNQL--IKVEHLAGVTGLTELDLSENNIS--KIENFEDLPALETL 640
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
+L +IT L LT+L L ++++ +IT+
Sbjct: 641 DLSYNKITR--LENLTALPNLREVNIYQNQITE 671
Score = 38.9 bits (89), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 53/106 (50%), Gaps = 10/106 (9%)
Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 334
LTNL+ L+L+ I E + NL L L+ L L + G +L+ LT L + LS
Sbjct: 106 LTNLQYLDLEENDI--EVIENLDHLARLEYLNLRGNAIEKIG--NLNALTQLVHLELS-- 159
Query: 335 GISDGSLRKLAGLSSLKSL-NLDARQITDTGLAALTSLTGLTHLDL 379
SL ++ L+ LK L NLD R+ + L LT LT LDL
Sbjct: 160 ---SNSLERVENLNHLKHLQNLDLRENNIKKIENLAGLTALTRLDL 202
>gi|325108768|ref|YP_004269836.1| hypothetical protein Plabr_2212 [Planctomyces brasiliensis DSM
5305]
gi|324969036|gb|ADY59814.1| hypothetical protein Plabr_2212 [Planctomyces brasiliensis DSM
5305]
Length = 268
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 64/113 (56%)
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 315
+L EI+D+ + + LT + +NL I D GL +L+GL +L L L T + +
Sbjct: 49 TFHLAEGEISDKSIQPVSELTQVYLVNLRGTAITDAGLAHLSGLDSLSRLHLEKTGITDA 108
Query: 316 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 368
GL+HL+GL LE +NL T ISD L++LA L LK L + Q+T G+ L
Sbjct: 109 GLKHLTGLNKLEYLNLYDTKISDAGLQQLAALKGLKKLYVWQTQVTWDGVKKL 161
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 65/116 (56%)
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
+ +L I D+ + ++ L + + L T + +GL HLSGL +L ++L TGI+D
Sbjct: 49 TFHLAEGEISDKSIQPVSELTQVYLVNLRGTAITDAGLAHLSGLDSLSRLHLEKTGITDA 108
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRSK 395
L+ L GL+ L+ LNL +I+D GL L +L GL L ++ ++T G L+ +
Sbjct: 109 GLKHLTGLNKLEYLNLYDTKISDAGLQQLAALKGLKKLYVWQTQVTWDGVKKLQEQ 164
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 59/98 (60%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
I+D ++P+S LT + + + + +TD+G+A+L GL L+ L+LE +T A L L+ L
Sbjct: 57 ISDKSIQPVSELTQVYLVNLRGTAITDAGLAHLSGLDSLSRLHLEKTGITDAGLKHLTGL 116
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265
L YLNL ++SD G ++ + + LK L + ++T
Sbjct: 117 NKLEYLNLYDTKISDAGLQQLAALKGLKKLYVWQTQVT 154
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 60/137 (43%), Gaps = 24/137 (17%)
Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
+ ++ +++D I + L ++ L+NL G +T A L LS L SL L+L +
Sbjct: 49 TFHLAEGEISDKSIQPVSELTQVYLVNLRGTAITDAGLAHLSGLDSLSRLHLEKTG---- 104
Query: 244 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 303
ITD L HL GL LE LNL I D GL L L LK
Sbjct: 105 --------------------ITDAGLKHLTGLNKLEYLNLYDTKISDAGLQQLAALKGLK 144
Query: 304 CLELSDTQVGSSGLRHL 320
L + TQV G++ L
Sbjct: 145 KLYVWQTQVTWDGVKKL 161
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 55/103 (53%), Gaps = 12/103 (11%)
Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 207
LVNL+G ITD+ + LSGL +L L + + +TD+G+ +L GL KL
Sbjct: 73 LVNLRG------------TAITDAGLAHLSGLDSLSRLHLEKTGITDAGLKHLTGLNKLE 120
Query: 208 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 250
LNL ++ A L L+AL L L + + Q++ DG +K +
Sbjct: 121 YLNLYDTKISDAGLQQLAALKGLKKLYVWQTQVTWDGVKKLQE 163
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 81/154 (52%), Gaps = 12/154 (7%)
Query: 51 VIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI---QISDGGLEHLRGLSN 107
++ +Q +++ V+ +G V +K N L+ F + +ISD ++ + L+
Sbjct: 18 LLPAQQAAVSKVEANGGRV-------MKLAQNDDRLEVTFHLAEGEISDKSIQPVSELTQ 70
Query: 108 LTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNC 167
+ ++ R AIT G+ +GL +L +L LE+ GL +L GL KLE LN+ +
Sbjct: 71 VYLVNLR-GTAITDAGLAHLSGLDSLSRLHLEKTGITDAGLKHLTGLNKLEYLNL-YDTK 128
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLK 201
I+D+ ++ L+ L LK L + ++VT G+ L+
Sbjct: 129 ISDAGLQQLAALKGLKKLYVWQTQVTWDGVKKLQ 162
>gi|171910953|ref|ZP_02926423.1| probable G protein-coupled receptor LGR4 [Verrucomicrobium spinosum
DSM 4136]
Length = 400
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 68/244 (27%), Positives = 116/244 (47%), Gaps = 16/244 (6%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS-KVTDSGIAYLKGLQKLTLLNLE 212
L K+ESLNI C +D + PL L LK+L+ + + K++D+G+ L GL +L +
Sbjct: 147 LSKIESLNIIATKC-SDDWIAPLGKLKTLKTLKFTNNGKLSDAGLEKLAGLNQLEAFSFV 205
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDG----CEKFSKIGSLKVLNLGFNEITDEC 268
G + +L ++ + D+G C KF +L+ ++L + D
Sbjct: 206 GTGMQGHAYAKFEGWTALTRVSHRGSSIDDEGLTLLCAKFP---NLESISLAHAKCGDAG 262
Query: 269 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 328
+ L LT L+ L L S LV++ + +L+ L+L D G+ + G+T L
Sbjct: 263 VAQLPKLTKLKGLELGSKNATPGSLVHVAKM-SLEYLQLGDGLDAPEGIAAIKGMTTLRR 321
Query: 329 INLS-FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 387
+ L+ + D L+ +AG+ L+SL L++ ++TD L L S + L L RI +
Sbjct: 322 LTLTNAKSLGDADLQAVAGIKGLESLELNSVELTDERLPLLKSFSHLKEL-----RIVNR 376
Query: 388 GAAY 391
Y
Sbjct: 377 PKGY 380
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 68/260 (26%), Positives = 111/260 (42%), Gaps = 27/260 (10%)
Query: 55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
Q S + S+++ + +D + L L++L F ++SD GLE L GL+ L + SF
Sbjct: 146 QLSKIESLNIIATKCSDDWIAPLGKLKTLKTLKFTNNGKLSDAGLEKLAGLNQLEAFSF- 204
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
+ F G L ++ G ++ +GL L C
Sbjct: 205 VGTGMQGHAYAKFEGWTALTRVSH------RGSSIDDEGLTLL-------C--------- 242
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
+ NL+S+ ++ +K D+G+A L L KL L L T L ++ + SL YL
Sbjct: 243 --AKFPNLESISLAHAKCGDAGVAQLPKLTKLKGLELGSKNATPGSLVHVAKM-SLEYLQ 299
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
L + +G + +L+ L L + D L + G+ LESL L+S + DE L
Sbjct: 300 LGDGLDAPEGIAAIKGMTTLRRLTLTNAKSLGDADLQAVAGIKGLESLELNSVELTDERL 359
Query: 294 VNLTGLCNLKCLELSDTQVG 313
L +LK L + + G
Sbjct: 360 PLLKSFSHLKELRIVNRPKG 379
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 58/230 (25%), Positives = 92/230 (40%), Gaps = 50/230 (21%)
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN-EITDECLVHLK 273
P AA + + L + LN+ + SDD K+ +LK L N +++D L L
Sbjct: 135 PYDAAFFEHVGQLSKIESLNIIATKCSDDWIAPLGKLKTLKTLKFTNNGKLSDAGLEKLA 194
Query: 274 GLTNLESLNLDSCG------------------------IGDEGLVNL-TGLCNLKCLELS 308
GL LE+ + G I DEGL L NL+ + L+
Sbjct: 195 GLNQLEAFSFVGTGMQGHAYAKFEGWTALTRVSHRGSSIDDEGLTLLCAKFPNLESISLA 254
Query: 309 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA----------------------- 345
+ G +G+ L LT L+ + L + GSL +A
Sbjct: 255 HAKCGDAGVAQLPKLTKLKGLELGSKNATPGSLVHVAKMSLEYLQLGDGLDAPEGIAAIK 314
Query: 346 GLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRS 394
G+++L+ L L +A+ + D L A+ + GL L+L +TD L+S
Sbjct: 315 GMTTLRRLTLTNAKSLGDADLQAVAGIKGLESLELNSVELTDERLPLLKS 364
>gi|443688071|gb|ELT90873.1| hypothetical protein CAPTEDRAFT_165456 [Capitella teleta]
Length = 642
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 119/406 (29%), Positives = 192/406 (47%), Gaps = 37/406 (9%)
Query: 18 RC--LTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGL 74
RC +T ++ + R+C LQDL L + P ++D + ++ ++ +++S S +TD+ L
Sbjct: 171 RCERITSLTFYSIRECRNLQDLNLSECPALDDDSLKMVLEGCKIIIYLNISHSLITDASL 230
Query: 75 IHL-KDCSNLQSLDFNFCIQISDGGLEHL---RGLSNLTSLSFRRNNAITAQGMKAFAG- 129
+ K C NLQ L FC++ SD GL++L L L + +T G+ +
Sbjct: 231 RSISKYCLNLQYLSLAFCLRYSDKGLQYLANGESAKRLNHLDISGCSQVTPNGLAKLSEG 290
Query: 130 -------LINLVKLDLERCTR-IHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
L+N ++ + C I NL+ + L S N ++D+ +K ++
Sbjct: 291 CSDVQTLLLNDIESFDDACLEAITDNCKNLRNISFLGSHN------LSDNALKNVATSKK 344
Query: 182 LKSLQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC 238
L+ L+I S K+TD Y+ K +L L L C +T L LS +L +NL C
Sbjct: 345 LQMLKIDSNCKITDITFKYIGKSCHELRHLYLVDCHRITDLTLKVLSQCRNLTVVNLADC 404
Query: 239 -QLSDDGCEKF--SKIGS-LKVLNL-GFNEITDECLVHL-KGLTNLESLNLDSCGIGDEG 292
+++D G S G+ L+ LNL + D LV++ K NL L+L C E
Sbjct: 405 VRITDTGVRYLVESSCGNKLQELNLTNCIRVGDIALVNIHKRCHNLTYLHLCFCEHISEA 464
Query: 293 LVNLTGLCN-LKCLELSDTQVGSSGLRHLSGLTNLESINLS-FTGISDGSLRKLA-GLSS 349
+ L G + L L++S G +GL L L+ +NLS + I+D L+K A +
Sbjct: 465 GIELLGQTHSLTALDISGCNCGDAGLSSLGNNIRLKDVNLSECSAITDLGLQKFAQQCTE 524
Query: 350 LKSLNLDARQ-ITDTGLAALT-SLTGLTHLDLFGAR-ITDSGAAYL 392
++ L+L Q ITD + L LTHL L G + +TD YL
Sbjct: 525 IERLDLSHCQMITDGAIKNLAFCCRMLTHLSLAGCKLLTDLSVQYL 570
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 107/218 (49%), Gaps = 10/218 (4%)
Query: 52 IASQGSSLLSVDLSGS-DVTDSGLIHLKD--CSN-LQSLDFNFCIQISDGGLEHL-RGLS 106
+ SQ +L V+L+ +TD+G+ +L + C N LQ L+ CI++ D L ++ +
Sbjct: 389 VLSQCRNLTVVNLADCVRITDTGVRYLVESSCGNKLQELNLTNCIRVGDIALVNIHKRCH 448
Query: 107 NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCN 166
NLT L I+ G++ +L LD+ C GL +L ++L+ +N+ C+
Sbjct: 449 NLTYLHLCFCEHISEAGIELLGQTHSLTALDISGCNCGDAGLSSLGNNIRLKDVNLSECS 508
Query: 167 CITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKG-LQKLTLLNLEGCP-VTAACLD 222
ITD ++ + T ++ L +S C +TD I L + LT L+L GC +T +
Sbjct: 509 AITDLGLQKFAQQCTEIERLDLSHCQMITDGAIKNLAFCCRMLTHLSLAGCKLLTDLSVQ 568
Query: 223 SLSAL-GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 259
LS + L YL+++ D K+ K G K+ L
Sbjct: 569 YLSGVCHYLLYLDISGSLHITDKSMKYLKKGCKKLQTL 606
>gi|443723521|gb|ELU11898.1| hypothetical protein CAPTEDRAFT_102929 [Capitella teleta]
Length = 439
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 93/281 (33%), Positives = 142/281 (50%), Gaps = 31/281 (11%)
Query: 130 LINLVKLDLERCTRIHGGLVN-LKGLMK-LESLNIKWCNCITDSDMKPLS-GLTNLKSLQ 186
L +LV L+L C I + + G K L+ L + C IT + + L+ GL+NL+ L
Sbjct: 161 LPSLVSLNLSLCKVITDSTIACIAGHQKQLQELELGGCAQITTNALLLLACGLSNLRRLN 220
Query: 187 I-SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 245
+ SC K+TD G+AYL G Q T+ P A L+ ++ L CQ D
Sbjct: 221 LRSCCKITDEGVAYLTG-QSHTV------PTGTAMLE---------HIVLQDCQKITDVS 264
Query: 246 EKFSKIG--SLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLC 300
K+ +G LK +NL F +TD L L + +L+ L+L +C GI D G+ L GL
Sbjct: 265 LKYLSLGFSQLKSVNLSFCTGVTDSGLECLSRMPSLQELDLRACDGISDHGVGYLAEGLT 324
Query: 301 NLKCLELSDT-QVGSSGLRHLS-GLTNLESINLSFTGISDGSLRKLAGLSS-LKSLNL-D 356
L L LS ++ + L H+S GL +L +++L ISD ++ L G S + LN+
Sbjct: 325 RLSVLHLSFCDRITDTALLHISHGLIHLTALSLCDCSISDEGIQHLIGSSQDIVKLNIGQ 384
Query: 357 ARQITDTGLAALT-SLTGLTHLDLFG-ARITDSGAAYLRSK 395
++TD L + + T L +D++G RIT G +LR +
Sbjct: 385 CDRLTDASLELIAQNFTQLHTIDIYGCTRITKLGVKHLRDQ 425
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 79/305 (25%), Positives = 146/305 (47%), Gaps = 51/305 (16%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEH 101
+ D + IA L ++L G + +T + L+ L SNL+ L+ C +I+D G+ +
Sbjct: 175 ITDSTIACIAGHQKQLQELELGGCAQITTNALLLLACGLSNLRRLNLRSCCKITDEGVAY 234
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
L G S+ A L ++V D ++ T + ++L G +L+S+N
Sbjct: 235 LTGQSHTVP--------------TGTAMLEHIVLQDCQKITDVSLKYLSL-GFSQLKSVN 279
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTA 218
+ +C +TDS ++ LS + +L+ L + +C ++D G+ YL +GL +L++L+L C +T
Sbjct: 280 LSFCTGVTDSGLECLSRMPSLQELDLRACDGISDHGVGYLAEGLTRLSVLHLSFCDRITD 339
Query: 219 ACLDSLS-ALGSLFYLNLNRCQLSDDGCEKFSKIGS---LKVLNLG-FNEITDECLVHL- 272
L +S L L L+L C +SD+G + IGS + LN+G + +TD L +
Sbjct: 340 TALLHISHGLIHLTALSLCDCSISDEGIQHL--IGSSQDIVKLNIGQCDRLTDASLELIA 397
Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 332
+ T L ++++ C T++ G++HL ++ +IN+
Sbjct: 398 QNFTQLHTIDIYGC-----------------------TRITKLGVKHLRDQPHISAINME 434
Query: 333 FTGIS 337
S
Sbjct: 435 LFAAS 439
>gi|297808737|ref|XP_002872252.1| F-box family protein [Arabidopsis lyrata subsp. lyrata]
gi|297318089|gb|EFH48511.1| F-box family protein [Arabidopsis lyrata subsp. lyrata]
Length = 642
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 106/339 (31%), Positives = 179/339 (52%), Gaps = 32/339 (9%)
Query: 80 CSNLQSLDFNFCIQISDGGLEHL----RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135
CSNL + +C++ISD G++ L +GL +L +S+ + IT +++ A L+ L
Sbjct: 171 CSNLNKISLKWCMEISDLGIDLLCKMCKGLKSL-DVSYLK---ITNDSIRSIALLLKLEV 226
Query: 136 LDLERCTRI-HGGLVNLK-GLMKLESLNIKWCNCITDSDMKPL-SGLTNLKSLQIS--CS 190
LD+ C I GL L+ G L+ +++ C ++ S + + G +++ L+ S S
Sbjct: 227 LDMVSCPLIDDAGLQFLENGSPSLQEVDVTRCERVSLSGLISIVRGHPDIQLLKASHCVS 286
Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL-SALGSLFYLNLNRC-QLSDDGCEKF 248
+V+ S + Y+K L+ L + ++G V+ + L +L S+ SL + L+RC ++D G F
Sbjct: 287 EVSGSFLQYIKALKHLKTIWIDGAHVSDSSLVTLSSSCRSLVEIGLSRCVDVTDIGMMGF 346
Query: 249 SK-IGSLKVLNL---GFNEITDECLVHL-KGLTNLESLNLDSCG-IGDEGLVNLTGLCN- 301
++ +LK LNL GF +TD + + + NLE+L L+SC I ++GL +L
Sbjct: 347 ARNCLNLKTLNLACCGF--VTDVAISAVAQSCRNLETLKLESCHLITEKGLQSLGCYSKL 404
Query: 302 LKCLELSDTQ-VGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDARQ 359
L+ L+L+D V GL ++S +NL+ + L T ISD + + S K L LD +
Sbjct: 405 LQELDLTDCYGVNDRGLEYISKCSNLQRLKLGLCTNISDKGIFHIGSKCS-KLLELDLYR 463
Query: 360 IT---DTGLAALTS-LTGLTHLDL-FGARITDSGAAYLR 393
D GLAAL+ L L L + +TD+G +R
Sbjct: 464 CAGFGDDGLAALSRGCKSLNRLILSYCCELTDTGVEQIR 502
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 108/400 (27%), Positives = 176/400 (44%), Gaps = 54/400 (13%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR 103
++D +D++ L S+D+S +T+ + + L+ LD C I D GL+ L
Sbjct: 185 ISDLGIDLLCKMCKGLKSLDVSYLKITNDSIRSIALLLKLEVLDMVSCPLIDDAGLQFLE 244
Query: 104 -GLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKLDLERC-TRIHGGLVN-LKGLMKLES 159
G +L + R ++ G+ + G ++ L C + + G + +K L L++
Sbjct: 245 NGSPSLQEVDVTRCERVSLSGLISIVRGHPDIQLLKASHCVSEVSGSFLQYIKALKHLKT 304
Query: 160 LNIKWCNCITDSDMKPLS---------GLT------------------NLKSLQISCSK- 191
+ I + ++DS + LS GL+ NLK+L ++C
Sbjct: 305 IWIDGAH-VSDSSLVTLSSSCRSLVEIGLSRCVDVTDIGMMGFARNCLNLKTLNLACCGF 363
Query: 192 VTDSGI-AYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFY-LNLNRCQ-LSDDGCEK 247
VTD I A + + L L LE C +T L SL L L+L C ++D G E
Sbjct: 364 VTDVAISAVAQSCRNLETLKLESCHLITEKGLQSLGCYSKLLQELDLTDCYGVNDRGLEY 423
Query: 248 FSKIGSLKVLNLGF-NEITDECLVHL-KGLTNLESLNLDSC-GIGDEGLVNLTGLCN--- 301
SK +L+ L LG I+D+ + H+ + L L+L C G GD+GL L+ C
Sbjct: 424 ISKCSNLQRLKLGLCTNISDKGIFHIGSKCSKLLELDLYRCAGFGDDGLAALSRGCKSLN 483
Query: 302 ----LKCLELSDTQVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNLD 356
C EL+DT G +R L L++LE L + TG+ ++ G L L+L
Sbjct: 484 RLILSYCCELTDT--GVEQIRQLELLSHLELRGLKNITGVGLAAIA--CGCKKLGYLDLK 539
Query: 357 -ARQITDTGLAALTSLT-GLTHLDLFGARITDSGAAYLRS 394
I D+G AL + L ++L ++D+ L S
Sbjct: 540 LCENIDDSGFWALAYFSKNLRQINLCNCSVSDTALCMLMS 579
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 89/373 (23%), Positives = 169/373 (45%), Gaps = 74/373 (19%)
Query: 81 SNLQSLDFNFCIQISDG-----GLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-LV 134
NL SLD + C ++ D L+ + SL+ R+ A+ A+G++ A + + L
Sbjct: 65 PNLSSLDLSVCPKLDDDVVLRLALDGTVSTLGIKSLNLSRSTAVRARGLETLARMCHALE 124
Query: 135 KLDLERCT----RIHGGLVNLKGLMKLE-----------------------SLNIKWCNC 167
++D+ C R L + GL +L+ +++KWC
Sbjct: 125 RVDVSHCWGFGDREAAALSSAVGLRELKMDKCLSLSDVGLARIVVGCSNLNKISLKWCME 184
Query: 168 ITDSDMKPLSGLTN-LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSL- 224
I+D + L + LKSL +S K+T+ I + L KL +L++ CP + A L L
Sbjct: 185 ISDLGIDLLCKMCKGLKSLDVSYLKITNDSIRSIALLLKLEVLDMVSCPLIDDAGLQFLE 244
Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL-----------NLGFNEITDECLVHLK 273
+ SL +++ R CE+ S G + ++ + +E++ L ++K
Sbjct: 245 NGSPSLQEVDVTR-------CERVSLSGLISIVRGHPDIQLLKASHCVSEVSGSFLQYIK 297
Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLCN-------LKCLELSDTQVGSSGLRHLSGLTNL 326
L +L+++ +D + D LV L+ C +C++++D +G G NL
Sbjct: 298 ALKHLKTIWIDGAHVSDSSLVTLSSSCRSLVEIGLSRCVDVTD--IGMMGFAR--NCLNL 353
Query: 327 ESINLSFTG-ISDGSLRKLA-GLSSLKSLNLDA-RQITDTGLAALTSLTGLTH----LDL 379
+++NL+ G ++D ++ +A +L++L L++ IT+ GL +L + L D
Sbjct: 354 KTLNLACCGFVTDVAISAVAQSCRNLETLKLESCHLITEKGLQSLGCYSKLLQELDLTDC 413
Query: 380 FGARITDSGAAYL 392
+G + D G Y+
Sbjct: 414 YG--VNDRGLEYI 424
>gi|242067197|ref|XP_002448875.1| hypothetical protein SORBIDRAFT_05g000740 [Sorghum bicolor]
gi|241934718|gb|EES07863.1| hypothetical protein SORBIDRAFT_05g000740 [Sorghum bicolor]
Length = 691
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 110/405 (27%), Positives = 180/405 (44%), Gaps = 65/405 (16%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
L++L L GV+D + ++A + L S+DLS + +T + NLQ L CI
Sbjct: 202 LRELSLKWCLGVSDLGIQLLALKCRKLTSLDLSYTMITKDSFPPIMKLPNLQELTLVGCI 261
Query: 93 QISDGGLEHLRGL--SNLTSLSFRRNNAITAQGMKAFAGLI-NLVKLDLERCTRIHGGLV 149
I D L L+ +L L IT G+ + L+ NL +LDL C + +V
Sbjct: 262 GIDDDALGSLQKECSKSLQVLDLSHCQNITDVGVSSILKLVPNLFELDLSYCCPVTPSMV 321
Query: 150 -NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAY-LKGLQKL 206
+ + + KL +L ++ C + D + +LK L +S CS +TD+ ++ + L+ L
Sbjct: 322 RSFQKIPKLRTLKLEGCKFMVDGLKAIGTSCVSLKELNLSKCSGMTDTEFSFAMSRLKNL 381
Query: 207 TLLNLEGCP-VTAACLDSL-SALGSLFYLNLNRCQ------------------------- 239
L++ C +T L ++ S+ SL L + C
Sbjct: 382 LKLDITCCRNITDVSLAAMTSSCTSLISLRMESCSRVSSGALQLIGKHCSHLEQLDLTDS 441
Query: 240 -LSDDGCEKFSKIGSLKVLNLGFN-EITDECLVHL-KGLTNLESLNLDSC-GIGDEGLVN 295
L D+G + S+ G L L +G +I+DE L H+ + NL ++L C G+ D+G++
Sbjct: 442 DLDDEGLKALSRCGKLSSLKIGICLKISDEGLTHIGRSCPNLRDIDLYRCGGLSDDGIIP 501
Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLN 354
+ C + LESINLS+ T I+D SL L+ + L +L
Sbjct: 502 IAQGCPM-----------------------LESINLSYCTEITDRSLISLSKCTKLNTLE 538
Query: 355 LDA-RQITDTGLAALT-SLTGLTHLDLFGA-RITDSGAAYLRSKF 396
+ IT TGL+ + L+ LD+ + D G YL S+F
Sbjct: 539 IRGCPMITSTGLSEIAMGCRLLSKLDIKKCFEVNDVGMLYL-SQF 582
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 105/355 (29%), Positives = 155/355 (43%), Gaps = 50/355 (14%)
Query: 80 CSNLQSLDFNFCIQISDGGLEHLR-GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL 138
C L+ L +C+ +SD G++ L LTSL IT L NL +L L
Sbjct: 199 CMELRELSLKWCLGVSDLGIQLLALKCRKLTSLDL-SYTMITKDSFPPIMKLPNLQELTL 257
Query: 139 ERCTRIHG---GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT-NLKSLQIS-CSKVT 193
C I G + + L+ L++ C ITD + + L NL L +S C VT
Sbjct: 258 VGCIGIDDDALGSLQKECSKSLQVLDLSHCQNITDVGVSSILKLVPNLFELDLSYCCPVT 317
Query: 194 DSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG----SLFYLNLNRCQLSDDGCEKF- 248
S + + + KL L LEGC +D L A+G SL LNL++C D F
Sbjct: 318 PSMVRSFQKIPKLRTLKLEGCKFM---VDGLKAIGTSCVSLKELNLSKCSGMTDTEFSFA 374
Query: 249 -SKIGSLKVLNLG-FNEITDECLVHL-KGLTNLESLNLDSCGIGDEGLVNLTGL-CNL-- 302
S++ +L L++ ITD L + T+L SL ++SC G + L G C+
Sbjct: 375 MSRLKNLLKLDITCCRNITDVSLAAMTSSCTSLISLRMESCSRVSSGALQLIGKHCSHLE 434
Query: 303 ------------------KCLELSDTQVG------SSGLRHL-SGLTNLESINLSFT-GI 336
+C +LS ++G GL H+ NL I+L G+
Sbjct: 435 QLDLTDSDLDDEGLKALSRCGKLSSLKIGICLKISDEGLTHIGRSCPNLRDIDLYRCGGL 494
Query: 337 SDGSLRKLA-GLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFG-ARITDSG 388
SD + +A G L+S+NL +ITD L +L+ T L L++ G IT +G
Sbjct: 495 SDDGIIPIAQGCPMLESINLSYCTEITDRSLISLSKCTKLNTLEIRGCPMITSTG 549
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 71/151 (47%), Gaps = 6/151 (3%)
Query: 73 GLIHLKDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFA-GL 130
GL L C L SL C++ISD GL H+ R NL + R ++ G+ A G
Sbjct: 447 GLKALSRCGKLSSLKIGICLKISDEGLTHIGRSCPNLRDIDLYRCGGLSDDGIIPIAQGC 506
Query: 131 INLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKSLQI- 187
L ++L CT I L++L KL +L I+ C IT + + ++ G L L I
Sbjct: 507 PMLESINLSYCTEITDRSLISLSKCTKLNTLEIRGCPMITSTGLSEIAMGCRLLSKLDIK 566
Query: 188 SCSKVTDSGIAYLKGL-QKLTLLNLEGCPVT 217
C +V D G+ YL L +NL C VT
Sbjct: 567 KCFEVNDVGMLYLSQFSHSLREINLSYCSVT 597
>gi|260788598|ref|XP_002589336.1| hypothetical protein BRAFLDRAFT_77788 [Branchiostoma floridae]
gi|229274513|gb|EEN45347.1| hypothetical protein BRAFLDRAFT_77788 [Branchiostoma floridae]
Length = 1470
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 123/242 (50%), Gaps = 25/242 (10%)
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYL-KGL---QKLTLLNLEGCPVTAACLDSLSALGSLF 231
+ L+ L+ + +S + ++D + L +GL QKL +NL ++ D L L SL
Sbjct: 1116 IQHLSLLEEIDLSHNVISDEAVPSLAEGLGSCQKLKKVNLSHNKLSGRG-DFLPPLPSLE 1174
Query: 232 YLNLNRCQLSDDGCEKFSK-IGS---LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
++L+ +SD+ ++ +GS LK +NL N+++D L L NLE ++L
Sbjct: 1175 EIDLSYNAISDEAVPGLAEGLGSCQNLKKVNLSHNKLSDRGDF-LPPLPNLEEIDLSHNI 1233
Query: 288 IGDEGLVNLTGLC----NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
I DE + L G NLK ++LS ++ G L L NLE I+LS+ I D +
Sbjct: 1234 ISDEAVPGLAGSLGSCQNLKKVDLSHNKLSDRG-HFLPPLPNLEEIDLSYNAIGDEAEPG 1292
Query: 344 LA-GLSS---LKSLNLDARQITDTG--LAALTSLTGLTHLDLFGARITDSG----AAYLR 393
LA GL S LK +NL +++D G AA L LTH+D++ +D AA+L+
Sbjct: 1293 LAEGLGSCQKLKKVNLSHNKLSDVGELTAAFIDLPFLTHVDIYNNSFSDESLPTIAAWLK 1352
Query: 394 SK 395
+
Sbjct: 1353 VR 1354
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 71/239 (29%), Positives = 109/239 (45%), Gaps = 22/239 (9%)
Query: 173 MKPLSGLTNLKSLQISCSKVTDSG---IAYLKG----LQKLTLLNLEGCPVTAACLDSLS 225
+K L L NL+ L + S + G I+ L G L+KL L + + +
Sbjct: 1058 LKFLPQLPNLQELALCVSCQGEEGAEHISQLYGVRHVLKKLKLKDWSLDSIMRLSTQMIQ 1117
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSK-IGS---LKVLNLGFNEITDECLVHLKGLTNLESL 281
L L ++L+ +SD+ ++ +GS LK +NL N+++ L L +LE +
Sbjct: 1118 HLSLLEEIDLSHNVISDEAVPSLAEGLGSCQKLKKVNLSHNKLSGRGDF-LPPLPSLEEI 1176
Query: 282 NLDSCGIGDEGLVNLT---GLC-NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 337
+L I DE + L G C NLK + LS ++ G L L NLE I+LS IS
Sbjct: 1177 DLSYNAISDEAVPGLAEGLGSCQNLKKVNLSHNKLSDRG-DFLPPLPNLEEIDLSHNIIS 1235
Query: 338 DGSLRKLAGL----SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
D ++ LAG +LK ++L +++D G L L L +DL I D L
Sbjct: 1236 DEAVPGLAGSLGSCQNLKKVDLSHNKLSDRG-HFLPPLPNLEEIDLSYNAIGDEAEPGL 1293
>gi|67473770|ref|XP_652634.1| hypothetical protein [Entamoeba histolytica HM-1:IMSS]
gi|56469505|gb|EAL47248.1| leucine rich repeat protein [Entamoeba histolytica HM-1:IMSS]
gi|449707794|gb|EMD47387.1| Fbox/leucine rich repeat-containing protein [Entamoeba histolytica
KU27]
Length = 657
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 83/360 (23%), Positives = 159/360 (44%), Gaps = 42/360 (11%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
LS SD G I+L C++L+ L N ++++ L+ L + NL +S + ++
Sbjct: 260 LSPSD----GFIYLAGCNSLRYLYLNES-EVTNYHLDVLARMDNLLGISLKGCPTLSDYS 314
Query: 124 MKAF-AGLI--NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
+ F G I +L +L++ H GL + L L L+I C+ I + PL+ L
Sbjct: 315 LTPFKTGPIRKSLEELNISDTMVTHIGLQVIARLKYLRVLDISHCDGI--KILSPLNSLK 372
Query: 181 NLKSLQISCSKVTDSGI--AYLKGLQKLTLLNLEGCPVTAACLDSL-SALGSLFYLNLNR 237
L+ L++S + + A+ + L L ++ P+ L + S +L +NL
Sbjct: 373 YLEVLRLSNVHINSDTLQDAFRIPPKYLQQLLVDARPIDDPLLTVICSKFPNLVSVNLKE 432
Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNL 296
Q++ G E + L+ ++ + D+ +L +T+LE+++ + C I EG+ L
Sbjct: 433 SQITSRGVEALQMVKYLRYVDFSKTSVDDQVFEYLSKITSLETISFEDCQNISGEGVHVL 492
Query: 297 TGLCNLKCL--------------ELSD-----------TQVGSSGLRHLSGLTNLESINL 331
L L+ L E+ D Q+G ++++ + L+ ++L
Sbjct: 493 EPLRGLRVLNFNGCKNFSEYSLKEMEDLSVETLRVSGANQIGMEAWKYIAQIEQLKRLDL 552
Query: 332 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
SFT + D ++++ L+ + L +ITD + L + +D AR T+ Y
Sbjct: 553 SFTSVEDNGIQEMLKSKWLEVIYLRHTKITDKSIETLLCCNLIRKID---ARETNVKKQY 609
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 67/227 (29%), Positives = 101/227 (44%), Gaps = 15/227 (6%)
Query: 175 PLSGLTNLKSLQISCSKVTDS-GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
P+SG+ S Q S+++ S G YL G L L L VT LD L+ + +L +
Sbjct: 247 PISGV----SAQTPLSQLSPSDGFIYLAGCNSLRYLYLNESEVTNYHLDVLARMDNLLGI 302
Query: 234 NLNRCQ-LSDDGCEKFSKIG----SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 288
+L C LSD F K G SL+ LN+ +T L + L L L++ C
Sbjct: 303 SLKGCPTLSDYSLTPF-KTGPIRKSLEELNISDTMVTHIGLQVIARLKYLRVLDISHCD- 360
Query: 289 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN--LESINLSFTGISDGSLRKL-A 345
G + L L L L+ L LS+ + S L+ + L+ + + I D L + +
Sbjct: 361 GIKILSPLNSLKYLEVLRLSNVHINSDTLQDAFRIPPKYLQQLLVDARPIDDPLLTVICS 420
Query: 346 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
+L S+NL QIT G+ AL + L ++D + D YL
Sbjct: 421 KFPNLVSVNLKESQITSRGVEALQMVKYLRYVDFSKTSVDDQVFEYL 467
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 77/295 (26%), Positives = 118/295 (40%), Gaps = 49/295 (16%)
Query: 144 IHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGL 203
+ + N++ L SL I ITDSD+ + LT LK L IS K I + +
Sbjct: 154 VSESIQNIRKYTSLTSLQIY---NITDSDIPSIGKLTGLKKLSISSKKFV-GKIEDMIDV 209
Query: 204 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL---------------SDDGCEKF 248
+LT L + P+ +L L ++ RC L DG
Sbjct: 210 SQLTSLEISNAPLGPEFYYNLYLFPYLVFIGFTRCHLPISGVSAQTPLSQLSPSDGFIYL 269
Query: 249 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNL-TGLC--NLKC 304
+ SL+ L L +E+T+ L L + NL ++L C + D L TG +L+
Sbjct: 270 AGCNSLRYLYLNESEVTNYHLDVLARMDNLLGISLKGCPTLSDYSLTPFKTGPIRKSLEE 329
Query: 305 LELSDTQVGSSGLR-----------------------HLSGLTNLESINLSFTGISDGSL 341
L +SDT V GL+ L+ L LE + LS I+ +L
Sbjct: 330 LNISDTMVTHIGLQVIARLKYLRVLDISHCDGIKILSPLNSLKYLEVLRLSNVHINSDTL 389
Query: 342 RKLAGLSS--LKSLNLDARQITDTGLAALTS-LTGLTHLDLFGARITDSGAAYLR 393
+ + L+ L +DAR I D L + S L ++L ++IT G L+
Sbjct: 390 QDAFRIPPKYLQQLLVDARPIDDPLLTVICSKFPNLVSVNLKESQITSRGVEALQ 444
Score = 45.8 bits (107), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 69/314 (21%), Positives = 130/314 (41%), Gaps = 46/314 (14%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
V + +DV+A + +LL + L G ++D L K +SL+ + ISD + H+
Sbjct: 285 VTNYHLDVLA-RMDNLLGISLKGCPTLSDYSLTPFKTGPIRKSLE---ELNISDTMVTHI 340
Query: 103 RGLSNLTSLSFRRNNAITA-QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
GL + L + R I+ G+K + L +L L++ R + +H +N L +
Sbjct: 341 -GLQVIARLKYLRVLDISHCDGIKILSPLNSLKYLEVLRLSNVH---INSDTLQDAFRIP 396
Query: 162 IKWCNCITDSDMKPL---------SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
K+ + D +P+ S NL S+ + S++T G+ L+ ++ L ++
Sbjct: 397 PKYLQQLL-VDARPIDDPLLTVICSKFPNLVSVNLKESQITSRGVEALQMVKYLRYVDFS 455
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNL------------ 259
V + LS + SL ++ CQ +S +G + L+VLN
Sbjct: 456 KTSVDDQVFEYLSKITSLETISFEDCQNISGEGVHVLEPLRGLRVLNFNGCKNFSEYSLK 515
Query: 260 -------------GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 306
G N+I E ++ + L+ L+L + D G+ + L+ +
Sbjct: 516 EMEDLSVETLRVSGANQIGMEAWKYIAQIEQLKRLDLSFTSVEDNGIQEMLKSKWLEVIY 575
Query: 307 LSDTQVGSSGLRHL 320
L T++ + L
Sbjct: 576 LRHTKITDKSIETL 589
>gi|290983780|ref|XP_002674606.1| predicted protein [Naegleria gruberi]
gi|284088197|gb|EFC41862.1| predicted protein [Naegleria gruberi]
Length = 232
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 98/187 (52%)
Query: 203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 262
+ +LT L++ + A + + L +L LN+ LS +G E K+ L VLN+ FN
Sbjct: 1 MNRLTKLSIGFNRLHDAGAEIIGQLTTLTELNVAENFLSHEGAESICKLTQLTVLNINFN 60
Query: 263 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 322
I D ++ L+ L +L++ S I +EG +++ L L L+L+D ++ G ++L
Sbjct: 61 GIGDLGAAYIGELSKLTNLSIASNFITEEGARSISKLKQLTILDLNDNRIACKGAQYLGE 120
Query: 323 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 382
L+ L+ +NL I D + ++ L +L LNL I + G+ ++ L LT L++
Sbjct: 121 LSQLKKLNLLANYIQDKGAKSVSQLENLTELNLTRNSIQNEGIKSIIELPLLTKLNISQN 180
Query: 383 RITDSGA 389
RI++ A
Sbjct: 181 RISNEEA 187
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 99/203 (48%), Gaps = 2/203 (0%)
Query: 143 RIHGGLVNLKG-LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLK 201
R+H + G L L LN+ N ++ + + LT L L I+ + + D G AY+
Sbjct: 13 RLHDAGAEIIGQLTTLTELNVAE-NFLSHEGAESICKLTQLTVLNINFNGIGDLGAAYIG 71
Query: 202 GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 261
L KLT L++ +T S+S L L L+LN +++ G + ++ LK LNL
Sbjct: 72 ELSKLTNLSIASNFITEEGARSISKLKQLTILDLNDNRIACKGAQYLGELSQLKKLNLLA 131
Query: 262 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 321
N I D+ + L NL LNL I +EG+ ++ L L L +S ++ + + +S
Sbjct: 132 NYIQDKGAKSVSQLENLTELNLTRNSIQNEGIKSIIELPLLTKLNISQNRISNEEAQLIS 191
Query: 322 GLTNLESINLSFTGISDGSLRKL 344
G+ L+ + + T I + +KL
Sbjct: 192 GMKQLKELVATHTQIDNEGAKKL 214
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 95/216 (43%)
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
+ L L I +++ D+G + L LT LN+ ++ +S+ L L LN+N
Sbjct: 1 MNRLTKLSIGFNRLHDAGAEIIGQLTTLTELNVAENFLSHEGAESICKLTQLTVLNINFN 60
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
+ D G ++ L L++ N IT+E + L L L+L+ I +G L
Sbjct: 61 GIGDLGAAYIGELSKLTNLSIASNFITEEGARSISKLKQLTILDLNDNRIACKGAQYLGE 120
Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
L LK L L + G + +S L NL +NL+ I + ++ + L L LN+
Sbjct: 121 LSQLKKLNLLANYIQDKGAKSVSQLENLTELNLTRNSIQNEGIKSIIELPLLTKLNISQN 180
Query: 359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRS 394
+I++ ++ + L L +I + GA L
Sbjct: 181 RISNEEAQLISGMKQLKELVATHTQIDNEGAKKLHE 216
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 61/229 (26%), Positives = 111/229 (48%), Gaps = 6/229 (2%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
L L +G + ++D ++I Q ++L ++++ + ++ G + + L L+ NF
Sbjct: 4 LTKLSIG-FNRLHDAGAEIIG-QLTTLTELNVAENFLSHEGAESICKLTQLTVLNINFN- 60
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
I D G ++ LS LT+LS +N IT +G ++ + L L LDL G L
Sbjct: 61 GIGDLGAAYIGELSKLTNLSIA-SNFITEEGARSISKLKQLTILDLNDNRIACKGAQYLG 119
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
L +L+ LN+ N I D K +S L NL L ++ + + + GI + L LT LN+
Sbjct: 120 ELSQLKKLNL-LANYIQDKGAKSVSQLENLTELNLTRNSIQNEGIKSIIELPLLTKLNIS 178
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 261
++ +S + L L Q+ ++G +K ++ L +L+L +
Sbjct: 179 QNRISNEEAQLISGMKQLKELVATHTQIDNEGAKKLHEM-ELDILDLSY 226
>gi|449019210|dbj|BAM82612.1| hypothetical protein, conserved [Cyanidioschyzon merolae strain 10D]
Length = 2325
Score = 72.0 bits (175), Expect = 5e-10, Method: Composition-based stats.
Identities = 109/399 (27%), Positives = 173/399 (43%), Gaps = 95/399 (23%)
Query: 83 LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR----RNNAI-TAQGMKAFAGLINLVKLD 137
L+ LD + CI ++D GL L ++ L++ + + AI + +A AGL+ L
Sbjct: 1801 LKHLDLSSCIHLTDEGLGAL--VAALSTPEAKAGDSEDTAIESVATTEASAGLV--APLT 1856
Query: 138 LERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL--SGLTNLKSLQISCSKVTDS 195
E + G LE+L++ C + D ++PL +L+ + +S +++T +
Sbjct: 1857 TEALLYSSSSNSSSSG--TLETLSVAHCFRLGDRSLRPLLRQHRQSLRVVDLSYTRITGA 1914
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAAC-LDSLSALG--------SLFYLNLNRC-QLSDDG- 244
+ L L +L L+L GC T + D+ + G L +L+L +C QL DG
Sbjct: 1915 VLQELGALPQLQSLSLCGCGETLSVESDAATRFGEELALPGKQLVHLDLGKCAQLVTDGF 1974
Query: 245 ----------------------------CEK--------FSKIGSLKVLNLGFNEITDEC 268
E+ +S +L+ L++ +TD
Sbjct: 1975 LAALAGLASGRRTHHQYNRQQYQQNPAAVERLVHATHGVYSSRDTLRSLSVHGCRLTDRS 2034
Query: 269 LVH-LKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQVGSS-GLRHLSGLTN 325
L H ++ LE L+L C I D GL +L L +L+ L+L+DT V S+ G L+ L
Sbjct: 2035 LSHYVRLFQGLERLDLSQCRLITDAGLEHLQSLKSLRELDLADTNVTSAVGASLLARLRQ 2094
Query: 326 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA------------------- 366
L ++LS+T + + L+ L L+ L LDAR I+D L
Sbjct: 2095 LRRLDLSYTAVQSNITKSLSTLEQLEWLGLDARLISDDALQVEENEASPEPVSSRDVAAP 2154
Query: 367 ALTSLT-------------GLTHLDLFGARITDSGAAYL 392
AL+S T L HLDLFGA ITD G +YL
Sbjct: 2155 ALSSATVAVHLHRRIGLPRHLRHLDLFGAHITDRGMSYL 2193
Score = 45.8 bits (107), Expect = 0.033, Method: Composition-based stats.
Identities = 104/394 (26%), Positives = 160/394 (40%), Gaps = 70/394 (17%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQS-------------------------------- 85
SL VDLS + +T + L L LQS
Sbjct: 1900 SLRVVDLSYTRITGAVLQELGALPQLQSLSLCGCGETLSVESDAATRFGEELALPGKQLV 1959
Query: 86 -LDFNFCIQ-ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV-----KLDL 138
LD C Q ++DG L L GL++ + N Q A L++ D
Sbjct: 1960 HLDLGKCAQLVTDGFLAALAGLASGRRTHHQYNRQQYQQNPAAVERLVHATHGVYSSRDT 2019
Query: 139 ERCTRIHGGLVNLKGL-------MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 191
R +HG + + L LE L++ C ITD+ ++ L L +L+ L ++ +
Sbjct: 2020 LRSLSVHGCRLTDRSLSHYVRLFQGLERLDLSQCRLITDAGLEHLQSLKSLRELDLADTN 2079
Query: 192 VTDS-GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE---- 246
VT + G + L L++L L+L V + SLS L L +L L+ +SDD +
Sbjct: 2080 VTSAVGASLLARLRQLRRLDLSYTAVQSNITKSLSTLEQLEWLGLDARLISDDALQVEEN 2139
Query: 247 --KFSKIGSLKVLNLGFNEITDECLVHLK-GLT-NLESLNLDSCGIGDEGLVNLTGLCN- 301
+ S V + T +H + GL +L L+L I D G+ L C
Sbjct: 2140 EASPEPVSSRDVAAPALSSATVAVHLHRRIGLPRHLRHLDLFGAHITDRGMSYLVQACPY 2199
Query: 302 LKCLELSDTQVGSSGLRHLSG-LTNLESINLSFT-GISDGSLRKLAGLSS---------- 349
++ LE+ + + LR ++ L L ++N+S ISD LR+ A L+
Sbjct: 2200 VESLEVCSGALTDAALRLIAQHLPYLRALNISQNMRISDAGLREYARLAQVQQDLGQPHL 2259
Query: 350 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 383
L++LNL +T GLA L L L +L L R
Sbjct: 2260 LETLNLAFTAVTWRGLAVL--LPTLPYLRLLCVR 2291
Score = 42.4 bits (98), Expect = 0.42, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 52 IASQGSSLLSVDLSGSDVTDSGLIH-LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTS 110
+ S +L S+ + G +TD L H ++ L+ LD + C I+D GLEHL+ L +L
Sbjct: 2013 VYSSRDTLRSLSVHGCRLTDRSLSHYVRLFQGLERLDLSQCRLITDAGLEHLQSLKSLRE 2072
Query: 111 LSFRRNNAITAQG 123
L N +A G
Sbjct: 2073 LDLADTNVTSAVG 2085
>gi|290980460|ref|XP_002672950.1| predicted protein [Naegleria gruberi]
gi|284086530|gb|EFC40206.1| predicted protein [Naegleria gruberi]
Length = 331
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 102/220 (46%), Gaps = 24/220 (10%)
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
+K +S + L SL IS +++ G + +++LT LN+ G + +S + L
Sbjct: 125 LKFISEMKQLISLDISYNRIDGEGAKLISEMKQLTSLNINGNVIGGEGAKFISGMKQLTS 184
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
L + ++ +G + S++ L L++G N+I DE + + + L SLN+ + IGD
Sbjct: 185 LYIYNNRIGGEGAKYISEMKQLISLDIGGNQIGDEEVKLISEMKQLTSLNIANNVIGD-- 242
Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
+G + + + L S+N+S+ I D + + + L S
Sbjct: 243 ----------------------AGAKFIGDMKQLTSLNISYNVIGDEGAKYINEMKQLTS 280
Query: 353 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
LN+ +I + G ++ + LT LD+ G RI GA ++
Sbjct: 281 LNITRNEIGNAGAKFISEMKQLTSLDIAGNRIGGEGAKFI 320
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 103/211 (48%), Gaps = 4/211 (1%)
Query: 146 GGLVNLKGLMKLE---SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKG 202
GG+ LK + +++ SL+I + N I K +S + L SL I+ + + G ++ G
Sbjct: 120 GGIEKLKFISEMKQLISLDISY-NRIDGEGAKLISEMKQLTSLNINGNVIGGEGAKFISG 178
Query: 203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 262
+++LT L + + +S + L L++ Q+ D+ + S++ L LN+ N
Sbjct: 179 MKQLTSLYIYNNRIGGEGAKYISEMKQLISLDIGGNQIGDEEVKLISEMKQLTSLNIANN 238
Query: 263 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 322
I D + + L SLN+ IGDEG + + L L ++ ++G++G + +S
Sbjct: 239 VIGDAGAKFIGDMKQLTSLNISYNVIGDEGAKYINEMKQLTSLNITRNEIGNAGAKFISE 298
Query: 323 LTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
+ L S++++ I + ++ + L SL
Sbjct: 299 MKQLTSLDIAGNRIGGEGAKFISEMKQLISL 329
>gi|254410000|ref|ZP_05023780.1| Ras family, putative [Coleofasciculus chthonoplastes PCC 7420]
gi|196183036|gb|EDX78020.1| Ras family, putative [Coleofasciculus chthonoplastes PCC 7420]
Length = 1115
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 103/343 (30%), Positives = 170/343 (49%), Gaps = 36/343 (10%)
Query: 54 SQGSSLLSVDLSGSDVTD-----SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNL 108
SQ +L ++LSG+ +T S L++L S L N Q E + L NL
Sbjct: 88 SQLVNLTKLNLSGNQLTQVSESISQLVNLTQLS----LSGNQLTQFP----ESISQLVNL 139
Query: 109 TSLSFRRNNAITAQGMKAFAGLINLVKLDL--ERCTRIHGGLVNLKGLMKLESLNIKWCN 166
T LS RN Q ++ + L+NL +L+L + T++ + L L +L+ L++
Sbjct: 140 TQLSLSRNQL--TQVPESISQLVNLTQLNLSYNQLTQVPESISQLVNLTQLD-LSVNKLT 196
Query: 167 CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 226
+ +S +S L NL L +S +++T + + L LT L+L G +T +S+S
Sbjct: 197 QVPES----ISQLVNLTQLNLSYNQLTQVSES-ISQLVNLTQLSLSGNKLTQVS-ESISQ 250
Query: 227 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 286
L +L L+L+ +L+ E S++ +L L+L N++T + + L NL L+L S
Sbjct: 251 LVNLTQLSLSGNKLTQ-VPESISQLVNLTQLSLSDNQLT-QVSESISQLVNLTQLDLSSN 308
Query: 287 GIGDEGLVNLTGLCNLKCLELSD---TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
+ +++ L NL L+LS TQV S +S L NL +NLS ++
Sbjct: 309 QLTQVS-ESISQLVNLTQLDLSSNQLTQVSES----ISQLVNLTQLNLSINKLTQVP-ES 362
Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
++ L +L LNL Q+T +++ L LT LDLFG +IT+
Sbjct: 363 ISQLVNLTWLNLSDNQLTQVP-ESISQLVNLTQLDLFGNKITE 404
>gi|428173790|gb|EKX42690.1| hypothetical protein GUITHDRAFT_73681, partial [Guillardia theta
CCMP2712]
Length = 439
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 94/328 (28%), Positives = 140/328 (42%), Gaps = 42/328 (12%)
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK-----GLMK 156
GLS+L +L NN +++ F+GL L L L H L+NL GL
Sbjct: 14 FNGLSSLQTLELS-NNRLSSLSEGVFSGLSALQFLQLH-----HNALLNLPSNVFDGLSS 67
Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
L+ L + N ++ GL +L++L +S ++++ G L L+L +
Sbjct: 68 LQQLYVH-NNVLSTLGPNTFKGLASLQNLDLSYNQLSTLPPDSFNGSSSLQTLSLFSNKI 126
Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 276
T D+ L L YL L QLS FS + L++L+L N +T GL+
Sbjct: 127 TNISSDAFRGLPGLKYLGLFDNQLSSLSEGVFSGLSGLQILSLYNNRVTSLPSNAFSGLS 186
Query: 277 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS---------SGLRHLS------ 321
L+ L+L++ I D L GL LK L L+ Q+ S S L+ L
Sbjct: 187 VLQELDLNNNQISDISLSAFNGLSGLKTLNLNSNQLSSLPSNAFFGLSALQQLQLDGNRI 246
Query: 322 ---------GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 372
GL+ LE +++SF + GLS+LK L++ QI+ A LT
Sbjct: 247 SSISMDAFDGLSALEELHMSFNQLQTVLSSNFNGLSALKLLDIQNNQISSISSGAFNGLT 306
Query: 373 GLTHLDLFGARITD------SGAAYLRS 394
LT L L G ++T G YL S
Sbjct: 307 ALTSLSLNGNKLTSIPAGVFDGLQYLES 334
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 70/246 (28%), Positives = 116/246 (47%), Gaps = 24/246 (9%)
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
+ + +T + +GL++L++L++S ++++ GL L L L + +
Sbjct: 2 YWSYLTSLPLGVFNGLSSLQTLELSNNRLSSLSEGVFSGLSALQFLQLHHNALLNLPSNV 61
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
L SL L ++ LS G F + SL+ L+L +N+++ G ++L++L+L
Sbjct: 62 FDGLSSLQQLYVHNNVLSTLGPNTFKGLASLQNLDLSYNQLSTLPPDSFNGSSSLQTLSL 121
Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGS---------SGLRHL-------------- 320
S I + GL LK L L D Q+ S SGL+ L
Sbjct: 122 FSNKITNISSDAFRGLPGLKYLGLFDNQLSSLSEGVFSGLSGLQILSLYNNRVTSLPSNA 181
Query: 321 -SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
SGL+ L+ ++L+ ISD SL GLS LK+LNL++ Q++ A L+ L L L
Sbjct: 182 FSGLSVLQELDLNNNQISDISLSAFNGLSGLKTLNLNSNQLSSLPSNAFFGLSALQQLQL 241
Query: 380 FGARIT 385
G RI+
Sbjct: 242 DGNRIS 247
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 95/352 (26%), Positives = 159/352 (45%), Gaps = 35/352 (9%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+SL ++DLS + ++ S+LQ+L F +I++ + RGL L L +
Sbjct: 90 ASLQNLDLSYNQLSTLPPDSFNGSSSLQTLSL-FSNKITNISSDAFRGLPGLKYLGLF-D 147
Query: 117 NAITAQGMKAFAGLINLVKLDL--ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
N +++ F+GL L L L R T + GL L+ L++ N I+D +
Sbjct: 148 NQLSSLSEGVFSGLSGLQILSLYNNRVTSLPSNA--FSGLSVLQELDLN-NNQISDISLS 204
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
+GL+ LK+L ++ ++++ GL L L L+G +++ +D+ L +L L+
Sbjct: 205 AFNGLSGLKTLNLNSNQLSSLPSNAFFGLSALQQLQLDGNRISSISMDAFDGLSALEELH 264
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD-------SCG 287
++ QL F+ + +LK+L++ N+I+ GLT L SL+L+ G
Sbjct: 265 MSFNQLQTVLSSNFNGLSALKLLDIQNNQISSISSGAFNGLTALTSLSLNGNKLTSIPAG 324
Query: 288 IGDEGLVNLTGLC--------------------NLKCLELSDTQVGSSGLRHLSGLTNLE 327
+ D GL L L NL+ L LS Q+ S L +GL+ L
Sbjct: 325 VFD-GLQYLESLILSSNQLECISSNAFASLLFLNLEELYLSYNQLTSLPLGVFNGLSKLV 383
Query: 328 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
++ LS + + GLSSLK LNL ++ L LT L + L
Sbjct: 384 TLTLSNNHVKELPAGVFNGLSSLKFLNLGHNELESLPLNLFDGLTSLEQVTL 435
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 99/341 (29%), Positives = 150/341 (43%), Gaps = 46/341 (13%)
Query: 15 VYSRCLTEVSLEAFR-----------DCALQDLCLGQYPGVND-KWMDVIASQGSSLLSV 62
++S +T +S +AFR D L L G + G++ + + + ++ +SL S
Sbjct: 121 LFSNKITNISSDAFRGLPGLKYLGLFDNQLSSLSEGVFSGLSGLQILSLYNNRVTSLPSN 180
Query: 63 DLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQ 122
SG V LQ LD N QISD L GLS L +L+ N +++
Sbjct: 181 AFSGLSV-------------LQELDLN-NNQISDISLSAFNGLSGLKTLNLNSN-QLSSL 225
Query: 123 GMKAFAGLINLVKLDLE--RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
AF GL L +L L+ R + I + GL LE L++ + N + +GL+
Sbjct: 226 PSNAFFGLSALQQLQLDGNRISSI--SMDAFDGLSALEELHMSF-NQLQTVLSSNFNGLS 282
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT---AACLDSLSALGSLFYLNLNR 237
LK L I ++++ GL LT L+L G +T A D L L SL L+
Sbjct: 283 ALKLLDIQNNQISSISSGAFNGLTALTSLSLNGNKLTSIPAGVFDGLQYLESLI---LSS 339
Query: 238 CQLSDDGCEKFSKIGSLKVLNL-----GFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
QL C + SL LNL +N++T L GL+ L +L L + + +
Sbjct: 340 NQLE---CISSNAFASLLFLNLEELYLSYNQLTSLPLGVFNGLSKLVTLTLSNNHVKELP 396
Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333
GL +LK L L ++ S L GLT+LE + L +
Sbjct: 397 AGVFNGLSSLKFLNLGHNELESLPLNLFDGLTSLEQVTLEW 437
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 83/315 (26%), Positives = 145/315 (46%), Gaps = 11/315 (3%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
K ++LQ+LD ++ Q+S + G S+L +LS N IT AF GL L L
Sbjct: 86 FKGLASLQNLDLSYN-QLSTLPPDSFNGSSSLQTLSLFSN-KITNISSDAFRGLPGLKYL 143
Query: 137 DL--ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 194
L + + + G+ GL L+ L++ + N +T SGL+ L+ L ++ ++++D
Sbjct: 144 GLFDNQLSSLSEGV--FSGLSGLQILSL-YNNRVTSLPSNAFSGLSVLQELDLNNNQISD 200
Query: 195 SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL 254
++ GL L LNL +++ ++ L +L L L+ ++S + F + +L
Sbjct: 201 ISLSAFNGLSGLKTLNLNSNQLSSLPSNAFFGLSALQQLQLDGNRISSISMDAFDGLSAL 260
Query: 255 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 314
+ L++ FN++ + GL+ L+ L++ + I GL L L L+ ++ S
Sbjct: 261 EELHMSFNQLQTVLSSNFNGLSALKLLDIQNNQISSISSGAFNGLTALTSLSLNGNKLTS 320
Query: 315 SGLRHLSGLTNLESINLSFTG---ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 371
GL LES+ LS IS + L L +L+ L L Q+T L L
Sbjct: 321 IPAGVFDGLQYLESLILSSNQLECISSNAFASLLFL-NLEELYLSYNQLTSLPLGVFNGL 379
Query: 372 TGLTHLDLFGARITD 386
+ L L L + +
Sbjct: 380 SKLVTLTLSNNHVKE 394
>gi|158298684|ref|XP_318863.4| AGAP009775-PA [Anopheles gambiae str. PEST]
gi|157014003|gb|EAA14468.4| AGAP009775-PA [Anopheles gambiae str. PEST]
Length = 547
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 86/307 (28%), Positives = 129/307 (42%), Gaps = 40/307 (13%)
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH----GGLVNLKGLMKLES 159
GL L ++ RNN IT M+ F G NL++LDL R R+ G +LK L L
Sbjct: 110 GLVRLKTIDLSRNN-ITQLAMENFRGQDNLIELDLSR-NRLDNIASGTFAHLKELKTLHL 167
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
++ N IT+ + + L LK L +S + + D K +Q L +L + GC ++
Sbjct: 168 ID----NSITEFNQRLFLHLAKLKHLDLSYNSIDDLPPEVFKDVQDLKILRVRGCRLSNI 223
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE---ITDECLVHLKGLT 276
+ L L L+L + Q+ E+F + L+ L L N+ I DE +H KGLT
Sbjct: 224 NPQIYNILSHLTELDLGQNQIKFLDKEEFKDLRHLQTLRLDGNQLSVIIDELFIHQKGLT 283
Query: 277 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS---- 332
L+ I D N L NL L+ S ++ L NL+++N+S
Sbjct: 284 LLDISRNRLAKIADRAFEN---LANLTFLDASYNKLSHIEPVCFRPLRNLQTLNISGNIQ 340
Query: 333 ---------------FTG--ISDG---SLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 372
TG ++D L + L +LNL I + L + L
Sbjct: 341 LDLGEMEDTINVIKNITGLMVADMGTLPLNLFSPFRHLSALNLSGNHIDNFTLQIIEPLN 400
Query: 373 GLTHLDL 379
L LDL
Sbjct: 401 QLEFLDL 407
Score = 39.3 bits (90), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 50/116 (43%), Gaps = 3/116 (2%)
Query: 271 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 330
+ K L L ++ + +GD GL LK ++LS + + + G NL ++
Sbjct: 86 YFKKLEILRIIDANVPSVGDRSF---WGLVRLKTIDLSRNNITQLAMENFRGQDNLIELD 142
Query: 331 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
LS + + + A L LK+L+L IT+ L L HLDL I D
Sbjct: 143 LSRNRLDNIASGTFAHLKELKTLHLIDNSITEFNQRLFLHLAKLKHLDLSYNSIDD 198
>gi|407034343|gb|EKE37172.1| leucine rich repeat protein [Entamoeba nuttalli P19]
Length = 657
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 84/360 (23%), Positives = 159/360 (44%), Gaps = 42/360 (11%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
LS SD G I+L C++L+ L N ++++ L+ L + NL +S + ++
Sbjct: 260 LSPSD----GFIYLAGCNSLRYLYLNES-EVTNYHLDVLARMDNLLGISLKGCPTLSDYS 314
Query: 124 MKAF-AGLI--NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
+ F G I +L +L++ H GL + L L L+I C+ I + PL+ L
Sbjct: 315 LTPFKTGPIRKSLEELNISDTMVTHIGLQIIVRLKYLRVLDISRCDGI--KILSPLNSLK 372
Query: 181 NLKSLQISCSKVTDSGI--AYLKGLQKLTLLNLEGCPVTAACLDSL-SALGSLFYLNLNR 237
L+ L++S V + A+ + L L ++ P+ L + S +L +NL
Sbjct: 373 YLEVLRLSNVHVNSDTLQDAFRIPPKYLQQLLVDARPIDDPLLTVICSKFPNLVSVNLKE 432
Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNL 296
Q++ G E + L+ ++ + D+ +L +T+LE+++ + C I EG+ L
Sbjct: 433 SQITSRGVEALQMVKYLRYVDFSKTSVDDQVFEYLSKITSLETISFEECQNISGEGVHVL 492
Query: 297 TGLCNLKCL--------------ELSD-----------TQVGSSGLRHLSGLTNLESINL 331
L L+ L E+ D Q+G ++++ + L+ ++L
Sbjct: 493 EPLRGLRVLNFNGCKNFSEYSLKEMEDLSVETLRVSGANQIGMEAWKYIAQIEQLKRLDL 552
Query: 332 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
SFT + D ++++ L+ + L +ITD + L + +D AR T+ Y
Sbjct: 553 SFTNVEDNGIQEMLKSKWLEVIYLRHTKITDKSIETLLCCNLIRKID---ARETNVEKQY 609
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 101/227 (44%), Gaps = 15/227 (6%)
Query: 175 PLSGLTNLKSLQISCSKVTDS-GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
P+SG+ S Q S+++ S G YL G L L L VT LD L+ + +L +
Sbjct: 247 PISGV----SAQTPLSQLSPSDGFIYLAGCNSLRYLYLNESEVTNYHLDVLARMDNLLGI 302
Query: 234 NLNRCQ-LSDDGCEKFSKIG----SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 288
+L C LSD F K G SL+ LN+ +T L + L L L++ C
Sbjct: 303 SLKGCPTLSDYSLTPF-KTGPIRKSLEELNISDTMVTHIGLQIIVRLKYLRVLDISRCD- 360
Query: 289 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN--LESINLSFTGISDGSLRKL-A 345
G + L L L L+ L LS+ V S L+ + L+ + + I D L + +
Sbjct: 361 GIKILSPLNSLKYLEVLRLSNVHVNSDTLQDAFRIPPKYLQQLLVDARPIDDPLLTVICS 420
Query: 346 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
+L S+NL QIT G+ AL + L ++D + D YL
Sbjct: 421 KFPNLVSVNLKESQITSRGVEALQMVKYLRYVDFSKTSVDDQVFEYL 467
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 74/288 (25%), Positives = 115/288 (39%), Gaps = 46/288 (15%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
++ + K SL ITDSD+ + LT LK L IS K I + + +LT L
Sbjct: 158 IQNITKYTSLTSLQIYNITDSDIPSIGKLTGLKKLSISSKKFI-GKIEDMIDVSQLTSLE 216
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQL---------------SDDGCEKFSKIGSLK 255
+ P+ +L L ++ RC L DG + SL+
Sbjct: 217 ISNAPLGPEFYYNLYLFPYLVFIGFTRCHLPISGVSAQTPLSQLSPSDGFIYLAGCNSLR 276
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNL-TGLC--NLKCLELSDTQ 311
L L +E+T+ L L + NL ++L C + D L TG +L+ L +SDT
Sbjct: 277 YLYLNESEVTNYHLDVLARMDNLLGISLKGCPTLSDYSLTPFKTGPIRKSLEELNISDTM 336
Query: 312 VGSSGLR-----------------------HLSGLTNLESINLSFTGISDGSLRKLAGLS 348
V GL+ L+ L LE + LS ++ +L+ +
Sbjct: 337 VTHIGLQIIVRLKYLRVLDISRCDGIKILSPLNSLKYLEVLRLSNVHVNSDTLQDAFRIP 396
Query: 349 S--LKSLNLDARQITDTGLAALTS-LTGLTHLDLFGARITDSGAAYLR 393
L+ L +DAR I D L + S L ++L ++IT G L+
Sbjct: 397 PKYLQQLLVDARPIDDPLLTVICSKFPNLVSVNLKESQITSRGVEALQ 444
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 70/314 (22%), Positives = 130/314 (41%), Gaps = 46/314 (14%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
V + +DV+A + +LL + L G ++D L K +SL+ + ISD + H+
Sbjct: 285 VTNYHLDVLA-RMDNLLGISLKGCPTLSDYSLTPFKTGPIRKSLE---ELNISDTMVTHI 340
Query: 103 RGLSNLTSLSFRRNNAITA-QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
GL + L + R I+ G+K + L +L L++ R + +H VN L +
Sbjct: 341 -GLQIIVRLKYLRVLDISRCDGIKILSPLNSLKYLEVLRLSNVH---VNSDTLQDAFRIP 396
Query: 162 IKWCNCITDSDMKPL---------SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
K+ + D +P+ S NL S+ + S++T G+ L+ ++ L ++
Sbjct: 397 PKYLQQLL-VDARPIDDPLLTVICSKFPNLVSVNLKESQITSRGVEALQMVKYLRYVDFS 455
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNL------------ 259
V + LS + SL ++ CQ +S +G + L+VLN
Sbjct: 456 KTSVDDQVFEYLSKITSLETISFEECQNISGEGVHVLEPLRGLRVLNFNGCKNFSEYSLK 515
Query: 260 -------------GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 306
G N+I E ++ + L+ L+L + D G+ + L+ +
Sbjct: 516 EMEDLSVETLRVSGANQIGMEAWKYIAQIEQLKRLDLSFTNVEDNGIQEMLKSKWLEVIY 575
Query: 307 LSDTQVGSSGLRHL 320
L T++ + L
Sbjct: 576 LRHTKITDKSIETL 589
>gi|354492507|ref|XP_003508389.1| PREDICTED: F-box/LRR-repeat protein 13 [Cricetulus griseus]
Length = 824
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 109/401 (27%), Positives = 192/401 (47%), Gaps = 36/401 (8%)
Query: 24 SLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHL-KDCS 81
+L+A C LQ+L + + D+ M I+ +L ++LS + +T+ + L +
Sbjct: 322 TLKAVSHCKNLQELNVSDCQSLTDESMRHISEGCPGVLYLNLSNTTITNRTMRLLPRYFP 381
Query: 82 NLQSLDFNFCIQISDGGLEHL---RGLSNLTSLSFRRNNAITAQGMKAFA----GLINLV 134
NLQ+L+ +C + +D GL++L G L L I+ QG + A G+++L
Sbjct: 382 NLQNLNLAYCRKFTDKGLQYLNLGNGCHKLIYLDLSGCTQISVQGFRNIANSCTGIMHLT 441
Query: 135 KLDL----ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS 190
D+ + C + V ++ +++ ++ I+D K L+ NLK ++ +
Sbjct: 442 INDMPTLTDNCVK-----VLVEKCLQISTVVFIGSPHISDCAFKALTS-CNLKKIRFEGN 495
Query: 191 K-VTDSGIAYL-KGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDDGCE 246
K +TD+ Y+ K + + + C +T + L SLS L L LNL C ++SD G
Sbjct: 496 KRITDACFKYIDKNYPGINHIYMVDCKTLTDSSLKSLSVLKQLTVLNLTNCIRISDAGLR 555
Query: 247 KF-SKIGSLKVLNLGFNE---ITDECLVHL-KGLTNLESLNLDSC-GIGDEGLVNLTGLC 300
+F S+K+ L N + D +V L + TNL L+L +C + D + + +
Sbjct: 556 QFLDGSVSVKIRELNLNNCSLVGDPAIVKLSERCTNLHYLSLRNCEHLTDLAIECIANMQ 615
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNLDA-- 357
+L ++LS T + GL LS L ++LS T I+D +R SS+ +LD
Sbjct: 616 SLISIDLSGTSISHEGLALLSRHRKLREVSLSECTNITDMGIRAFCR-SSMNLEHLDVSH 674
Query: 358 -RQITDTGLAALTSL-TGLTHLDLFG-ARITDSGAAYLRSK 395
Q++D + A+ T +T L++ G +ITD G L +K
Sbjct: 675 CSQLSDDIIKAVAIFCTQITSLNIAGCPKITDGGLETLSAK 715
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 115/243 (47%), Gaps = 22/243 (9%)
Query: 41 YPGVNDKWM-DVIASQGSSLLSVDLSGS----------DVTDSGLIHLKDCS---NLQSL 86
YPG+N +M D SSL S+ + ++D+GL D S ++ L
Sbjct: 510 YPGINHIYMVDCKTLTDSSLKSLSVLKQLTVLNLTNCIRISDAGLRQFLDGSVSVKIREL 569
Query: 87 DFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH 145
+ N C + D + L +NL LS R +T ++ A + +L+ +DL + H
Sbjct: 570 NLNNCSLVGDPAIVKLSERCTNLHYLSLRNCEHLTDLAIECIANMQSLISIDLSGTSISH 629
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPL-SGLTNLKSLQIS-CSKVTDSGIAYLKGL 203
GL L KL +++ C ITD ++ NL+ L +S CS+++D I +
Sbjct: 630 EGLALLSRHRKLREVSLSECTNITDMGIRAFCRSSMNLEHLDVSHCSQLSDDIIKAVAIF 689
Query: 204 -QKLTLLNLEGCP-VTAACLDSLSA-LGSLFYLNLNRCQLSDDGCEKFSKIG--SLKVLN 258
++T LN+ GCP +T L++LSA L L+++ C L D + ++G L++L
Sbjct: 690 CTQITSLNIAGCPKITDGGLETLSAKCHYLHILDISGCILLTDQILQDLRVGCKQLRILK 749
Query: 259 LGF 261
+ F
Sbjct: 750 MQF 752
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 64/213 (30%), Positives = 101/213 (47%), Gaps = 22/213 (10%)
Query: 203 LQKLTL----LNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSK-IGSLKV 256
LQK L LN GC L ++S +L LN++ CQ L+D+ S+ +
Sbjct: 301 LQKWRLNVLRLNFRGCFFRTKTLKAVSHCKNLQELNVSDCQSLTDESMRHISEGCPGVLY 360
Query: 257 LNLGFNEITDECLVHL-KGLTNLESLNLDSC-GIGDEGL--VNLTGLCN-LKCLELSD-T 310
LNL IT+ + L + NL++LNL C D+GL +NL C+ L L+LS T
Sbjct: 361 LNLSNTTITNRTMRLLPRYFPNLQNLNLAYCRKFTDKGLQYLNLGNGCHKLIYLDLSGCT 420
Query: 311 QVGSSGLRHL----SGLTNLESINLSFTGISDGSLRKLAG--LSSLKSLNLDARQITDTG 364
Q+ G R++ +G+ +L +IN ++D ++ L L + + + I+D
Sbjct: 421 QISVQGFRNIANSCTGIMHL-TIN-DMPTLTDNCVKVLVEKCLQISTVVFIGSPHISDCA 478
Query: 365 LAALTSLTGLTHLDLFG-ARITDSGAAYLRSKF 396
ALTS L + G RITD+ Y+ +
Sbjct: 479 FKALTS-CNLKKIRFEGNKRITDACFKYIDKNY 510
>gi|290994276|ref|XP_002679758.1| predicted protein [Naegleria gruberi]
gi|284093376|gb|EFC47014.1| predicted protein [Naegleria gruberi]
Length = 205
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 99/203 (48%)
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
+ L SL IS ++ D + +++LT L++ G + LS + L LN+
Sbjct: 1 MKQLISLNISGNEFGDEEAKLISEMKQLTSLDISGNRIGDEGAKYLSEMKQLISLNIGEN 60
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
++ D+G + S+ L LN+ F +I E + + L SLN+ I EG ++
Sbjct: 61 EIGDEGAKLISETRQLASLNICFTQIGIEEAKLISEMRQLTSLNISDNRICVEGAKWISE 120
Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
+ L L++S ++G G + +S + L S+++S+ I D + ++ + L SLN+
Sbjct: 121 MRQLTSLDISGNRIGDEGAKTISEMKQLTSLDISYNRIGDEGAKFISEMKQLISLNIRGN 180
Query: 359 QITDTGLAALTSLTGLTHLDLFG 381
+I D G+ ++ + LT L G
Sbjct: 181 RIGDEGVKYISEMKQLTSLTYKG 203
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 94/190 (49%)
Query: 203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 262
+++L LN+ G +S + L L+++ ++ D+G + S++ L LN+G N
Sbjct: 1 MKQLISLNISGNEFGDEEAKLISEMKQLTSLDISGNRIGDEGAKYLSEMKQLISLNIGEN 60
Query: 263 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 322
EI DE + L SLN+ IG E ++ + L L +SD ++ G + +S
Sbjct: 61 EIGDEGAKLISETRQLASLNICFTQIGIEEAKLISEMRQLTSLNISDNRICVEGAKWISE 120
Query: 323 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 382
+ L S+++S I D + ++ + L SL++ +I D G ++ + L L++ G
Sbjct: 121 MRQLTSLDISGNRIGDEGAKTISEMKQLTSLDISYNRIGDEGAKFISEMKQLISLNIRGN 180
Query: 383 RITDSGAAYL 392
RI D G Y+
Sbjct: 181 RIGDEGVKYI 190
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 105/226 (46%), Gaps = 33/226 (14%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L+S+++SG++ D + + L SLD + +I D G ++L + L SL+ N
Sbjct: 4 LISLNISGNEFGDEEAKLISEMKQLTSLDISGN-RIGDEGAKYLSEMKQLISLNIGE-NE 61
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD---SDMKP 175
I +G K + TR +L SLNI C T + K
Sbjct: 62 IGDEGAKLIS------------ETR------------QLASLNI----CFTQIGIEEAKL 93
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
+S + L SL IS +++ G ++ +++LT L++ G + ++S + L L++
Sbjct: 94 ISEMRQLTSLNISDNRICVEGAKWISEMRQLTSLDISGNRIGDEGAKTISEMKQLTSLDI 153
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 281
+ ++ D+G + S++ L LN+ N I DE + ++ + L SL
Sbjct: 154 SYNRIGDEGAKFISEMKQLISLNIRGNRIGDEGVKYISEMKQLTSL 199
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 76/159 (47%), Gaps = 1/159 (0%)
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
G L + +L SLNI N I D K +S L SL I +++ + +++L
Sbjct: 42 GAKYLSEMKQLISLNI-GENEIGDEGAKLISETRQLASLNICFTQIGIEEAKLISEMRQL 100
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 266
T LN+ + +S + L L+++ ++ D+G + S++ L L++ +N I D
Sbjct: 101 TSLNISDNRICVEGAKWISEMRQLTSLDISGNRIGDEGAKTISEMKQLTSLDISYNRIGD 160
Query: 267 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 305
E + + L SLN+ IGDEG+ ++ + L L
Sbjct: 161 EGAKFISEMKQLISLNIRGNRIGDEGVKYISEMKQLTSL 199
Score = 46.2 bits (108), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 84/186 (45%), Gaps = 31/186 (16%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDF----------------------NFC 91
S+ L S+D+SG+ + D G +L + L SL+ N C
Sbjct: 23 SEMKQLTSLDISGNRIGDEGAKYLSEMKQLISLNIGENEIGDEGAKLISETRQLASLNIC 82
Query: 92 I-QISDGGLEHLRGLS---NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGG 147
QI G+E + +S LTSL+ +N I +G K + + L LD+ G
Sbjct: 83 FTQI---GIEEAKLISEMRQLTSLNI-SDNRICVEGAKWISEMRQLTSLDISGNRIGDEG 138
Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 207
+ + +L SL+I + N I D K +S + L SL I +++ D G+ Y+ +++LT
Sbjct: 139 AKTISEMKQLTSLDISY-NRIGDEGAKFISEMKQLISLNIRGNRIGDEGVKYISEMKQLT 197
Query: 208 LLNLEG 213
L +G
Sbjct: 198 SLTYKG 203
>gi|451982090|ref|ZP_21930421.1| exproted hypothetical protein [Nitrospina gracilis 3/211]
gi|451760644|emb|CCQ91701.1| exproted hypothetical protein [Nitrospina gracilis 3/211]
Length = 323
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 71/213 (33%), Positives = 97/213 (45%), Gaps = 18/213 (8%)
Query: 199 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV-- 256
YL LQ L L N P AA L S + L +LNL Q+ G E + +LK
Sbjct: 94 YLPNLQTLNLFNNRIGPEGAAALASSNKYPHLSHLNLWGNQIGPSGAEALANSDTLKALE 153
Query: 257 -LNLGFNEITDECLVHLKGLTNLES---LNLDSCGIGDEGLVNLTG---LCNLKCLELSD 309
L+L N I D L+ L LE L LD G+GD GL L L NL+ L LS
Sbjct: 154 YLDLSGNGIGDPGLIALARSPVLERIRILRLDKNGVGDRGLAALASSPYLGNLEVLSLSH 213
Query: 310 TQVGSSGLRHLSG---LTNLESINLSFTGISDGSLRKLA---GLSSLKSLNLDARQITDT 363
++G G + L+ + L + L I D ++ LA +L+ L+L IT+T
Sbjct: 214 NEIGQEGAKVLAESPYIRKLRQLRLERNRIGDVGVKHLAESEAFQNLEELDLQWNGITET 273
Query: 364 G---LAALTSLTGLTHLDLFGARITDSGAAYLR 393
G LA LT L L L+G I ++G ++
Sbjct: 274 GAHDLAGSPVLTRLNRLYLWGNEIGNAGVRAIK 306
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 83/180 (46%), Gaps = 16/180 (8%)
Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS------KIGSLKVLNLGFNEITDECL 269
+ A L L G+ LN + L DDG + + K+ +L + + GF + L
Sbjct: 31 INAIILKELKQNGTHLKLNFS-GMLGDDGVRQLARSRLLKKVETLDLNSHGFGNAGAQGL 89
Query: 270 VHLKGLTNLESLNLDSCGIGDEGLVNLTG---LCNLKCLELSDTQVGSSGLRHLSG---L 323
K L NL++LNL + IG EG L +L L L Q+G SG L+ L
Sbjct: 90 ADSKYLPNLQTLNLFNNRIGPEGAAALASSNKYPHLSHLNLWGNQIGPSGAEALANSDTL 149
Query: 324 TNLESINLSFTGISDGSLRKLAG---LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 380
LE ++LS GI D L LA L ++ L LD + D GLAAL S L +L++
Sbjct: 150 KALEYLDLSGNGIGDPGLIALARSPVLERIRILRLDKNGVGDRGLAALASSPYLGNLEVL 209
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 94/191 (49%), Gaps = 19/191 (9%)
Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQ---ISCSKVTDSGIAYLKG---LQKLTLLN 210
L LN+ W N I S + L+ LK+L+ +S + + D G+ L L+++ +L
Sbjct: 125 LSHLNL-WGNQIGPSGAEALANSDTLKALEYLDLSGNGIGDPGLIALARSPVLERIRILR 183
Query: 211 LEGCPVTA---ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK---IGSLKVLNLGFNEI 264
L+ V A L S LG+L L+L+ ++ +G + ++ I L+ L L N I
Sbjct: 184 LDKNGVGDRGLAALASSPYLGNLEVLSLSHNEIGQEGAKVLAESPYIRKLRQLRLERNRI 243
Query: 265 TDECLVHL---KGLTNLESLNLDSCGIGDEGLVNLTG---LCNLKCLELSDTQVGSSGLR 318
D + HL + NLE L+L GI + G +L G L L L L ++G++G+R
Sbjct: 244 GDVGVKHLAESEAFQNLEELDLQWNGITETGAHDLAGSPVLTRLNRLYLWGNEIGNAGVR 303
Query: 319 HLSGLTNLESI 329
+ NL+++
Sbjct: 304 AIKKSDNLKNV 314
Score = 42.0 bits (97), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 87/191 (45%), Gaps = 34/191 (17%)
Query: 40 QYPGVN--DKWMDVIASQGSSLLS----------VDLSGSDVTDSGLIHLKDCSNLQ--- 84
+YP ++ + W + I G+ L+ +DLSG+ + D GLI L L+
Sbjct: 121 KYPHLSHLNLWGNQIGPSGAEALANSDTLKALEYLDLSGNGIGDPGLIALARSPVLERIR 180
Query: 85 --SLDFNFCIQISDGGLEHLRG---LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE 139
LD N + D GL L L NL LS +N I +G K A + KL
Sbjct: 181 ILRLDKN---GVGDRGLAALASSPYLGNLEVLSL-SHNEIGQEGAKVLAESPYIRKLRQL 236
Query: 140 RCTRIHGGLVNLKGLMK------LESLNIKWCNCITDSDMKPLSG---LTNLKSLQISCS 190
R R G V +K L + LE L+++W N IT++ L+G LT L L + +
Sbjct: 237 RLERNRIGDVGVKHLAESEAFQNLEELDLQW-NGITETGAHDLAGSPVLTRLNRLYLWGN 295
Query: 191 KVTDSGIAYLK 201
++ ++G+ +K
Sbjct: 296 EIGNAGVRAIK 306
>gi|83629969|gb|ABC26646.1| internalin E [Listeria monocytogenes]
gi|85679293|gb|ABC72062.1| InlE [Listeria monocytogenes]
Length = 498
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 106/213 (49%), Gaps = 38/213 (17%)
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
LTNL L+++ +++TD ++ L L K+T L L G P L +SAL L
Sbjct: 94 LTNLSELELTDNQITD--VSPLANLTKITELGLSGNP-----LKDVSALAGL-------- 138
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
SLK+L+L + +ITD + L GLTNL+ LNLD I D + L
Sbjct: 139 -------------KSLKMLHLIYTDITD--VTSLAGLTNLQELNLDINQITD--ISPLAA 181
Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
L NL+ L L TQV S L L+ L+ L +N +SD + LA LSSL + L
Sbjct: 182 LTNLQTLSLGYTQV--SDLTPLANLSKLTILNAENCKVSD--ISPLASLSSLTEVYLREN 237
Query: 359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
QI+D ++ L ++ L+ ++L IT+ Y
Sbjct: 238 QISD--VSPLANIPNLSIIELTDQIITNQPVYY 268
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 70/122 (57%), Gaps = 17/122 (13%)
Query: 274 GLTNLESL----NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG-----LRHLSGLT 324
G+T +E + NL + D + +++ L NL + T++G SG + L+GL
Sbjct: 84 GITTIEGMQYLTNLSELELTDNQITDVSPLANLTKI----TELGLSGNPLKDVSALAGLK 139
Query: 325 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 384
+L+ ++L +T I+D + LAGL++L+ LNLD QITD ++ L +LT L L L ++
Sbjct: 140 SLKMLHLIYTDITD--VTSLAGLTNLQELNLDINQITD--ISPLAALTNLQTLSLGYTQV 195
Query: 385 TD 386
+D
Sbjct: 196 SD 197
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 66/262 (25%), Positives = 116/262 (44%), Gaps = 46/262 (17%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
+Q + Q +N+ + D + + L L +DVTD + D +
Sbjct: 30 VQAAVIEQPTPINEIFTDPVVADNVKTL---LEKADVTDE----------VTQTDLDSIT 76
Query: 93 QIS--DGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL-DLERCTRIHGGLV 149
Q+S G+ + G+ LT+LS +T + + L NL K+ +L +
Sbjct: 77 QLSAKSAGITTIEGMQYLTNLSELE---LTDNQITDVSPLANLTKITELGLSGNPLKDVS 133
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQ---- 204
L GL L+ L++ + + +D+ L+GLTNL+ L + +++TD S +A L LQ
Sbjct: 134 ALAGLKSLKMLHLIYTDI---TDVTSLAGLTNLQELNLDINQITDISPLAALTNLQTLSL 190
Query: 205 ---------------KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 249
KLT+LN E C V + + L++L SL + L Q+SD +
Sbjct: 191 GYTQVSDLTPLANLSKLTILNAENCKV--SDISPLASLSSLTEVYLRENQISD--VSPLA 246
Query: 250 KIGSLKVLNLGFNEITDECLVH 271
I +L ++ L IT++ + +
Sbjct: 247 NIPNLSIIELTDQIITNQPVYY 268
>gi|302836756|ref|XP_002949938.1| hypothetical protein VOLCADRAFT_90266 [Volvox carteri f.
nagariensis]
gi|300264847|gb|EFJ49041.1| hypothetical protein VOLCADRAFT_90266 [Volvox carteri f.
nagariensis]
Length = 685
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 88/314 (28%), Positives = 138/314 (43%), Gaps = 56/314 (17%)
Query: 63 DLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQ 122
D + V++ GL + ++L L C+ +++ GL L L+ LT LS R +T Q
Sbjct: 302 DRARPWVSNRGLASVCRITSLTRLILRDCLSLTNRGLAPLSSLTGLTCLSLRGCRKLTNQ 361
Query: 123 GMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNL 182
G++A GL +L L +L G+++L +D + PL+ L L
Sbjct: 362 GIEALRGLQHLQHL-------------SLYGVVRL-----------SDKGLVPLAALPAL 397
Query: 183 KSLQISCSKVTDSGIAY----LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
++L++ ++V D G+ + L GL+ L L+ E VT A + LS+L L L L
Sbjct: 398 RTLELGYTRVRDEGLGHVAVRLGGLRALVLVREE---VTDAGVRQLSSLSGLTRLVLR-- 452
Query: 239 QLSDDGCEK--------FSKIGSLKVL----NLGFNEIT-DECLVHLKGLTNLESLNLDS 285
D E + L+VL N FN + CL L L SL+L +
Sbjct: 453 ----DTVEATGETLAVLLPALKELQVLDLQRNWSFNNMQLARCLPQLVSAPALASLDLRA 508
Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSG----LRHLSGLTNLESINLSFTGISDGSL 341
+G+EG+ L + +L+ L LS S L L LT L NL + +
Sbjct: 509 TWVGEEGIAALARIPSLRRLALSPQHEHWSKYLNLLPQLHQLTALVLRNLP--SLPYQLV 566
Query: 342 RKLAGLSSLKSLNL 355
LAGL L+ L++
Sbjct: 567 EALAGLPGLRELDV 580
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 79/162 (48%), Gaps = 26/162 (16%)
Query: 221 LDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNL 278
L S+ + SL L L C L++ G S + L L+L G ++T++ + L+GL +L
Sbjct: 313 LASVCRITSLTRLILRDCLSLTNRGLAPLSSLTGLTCLSLRGCRKLTNQGIEALRGLQHL 372
Query: 279 ESLNL-DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 337
+ L+L + D+GLV L L L+ LEL T+V GL H++
Sbjct: 373 QHLSLYGVVRLSDKGLVPLAALPALRTLELGYTRVRDEGLGHVA---------------- 416
Query: 338 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
L L++L L ++TD G+ L+SL+GLT L L
Sbjct: 417 -------VRLGGLRALVLVREEVTDAGVRQLSSLSGLTRLVL 451
>gi|406832962|ref|ZP_11092556.1| hypothetical protein SpalD1_15024 [Schlesneria paludicola DSM
18645]
Length = 236
Score = 71.2 bits (173), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 90/190 (47%), Gaps = 18/190 (9%)
Query: 211 LEGCPVTAAC-----------LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 259
L G PV + L + L L L+L + + D ++ +++ +L L L
Sbjct: 44 LPGTPVVSVSFYGSSRFNGKFLHLVKGLDQLTSLDLRKTDIGDTHLKEIAELENLTTLRL 103
Query: 260 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 319
ITD L+ L+ L +L+L I D+GL L+ +L+ L+LS+T + GL+
Sbjct: 104 SNVPITDAGLIELRSQKKLSTLDLAGTRITDDGLKELSVHHSLRYLDLSETTITGMGLKD 163
Query: 320 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
LSGL NL S+NL T ++D L + L +NL +TD G A + + +
Sbjct: 164 LSGLPNLLSLNLENTKVNDTGLECVHEFKHLIRINLRRTSVTDAGQKAFS-------VSM 216
Query: 380 FGARITDSGA 389
RI DSG+
Sbjct: 217 PNTRIYDSGS 226
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 84/178 (47%), Gaps = 12/178 (6%)
Query: 96 DGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGL 154
+G HL +GL LTSL R+ + I +K A L NL L L GL+ L+
Sbjct: 61 NGKFLHLVKGLDQLTSLDLRKTD-IGDTHLKEIAELENLTTLRLSNVPITDAGLIELRSQ 119
Query: 155 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 214
KL +L++ ITD +K LS +L+ L +S + +T G+ L GL L LNLE
Sbjct: 120 KKLSTLDLAGTR-ITDDGLKELSVHHSLRYLDLSETTITGMGLKDLSGLPNLLSLNLENT 178
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS------KI---GSLKVLNLGFNE 263
V L+ + L +NL R ++D G + FS +I GS N+G N
Sbjct: 179 KVNDTGLECVHEFKHLIRINLRRTSVTDAGQKAFSVSMPNTRIYDSGSGPAFNVGMNR 236
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 92/182 (50%), Gaps = 26/182 (14%)
Query: 141 CTRIHGGLVNL-KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAY 199
+R +G ++L KGL +L SL+++ + I D+ +K ++ L NL +L++S +TD+G+
Sbjct: 57 SSRFNGKFLHLVKGLDQLTSLDLRKTD-IGDTHLKEIAELENLTTLRLSNVPITDAGLIE 115
Query: 200 LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 259
L+ +KL+ L+L G +T DDG ++ S SL+ L+L
Sbjct: 116 LRSQKKLSTLDLAGTRIT------------------------DDGLKELSVHHSLRYLDL 151
Query: 260 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 319
IT L L GL NL SLNL++ + D GL + +L + L T V +G +
Sbjct: 152 SETTITGMGLKDLSGLPNLLSLNLENTKVNDTGLECVHEFKHLIRINLRRTSVTDAGQKA 211
Query: 320 LS 321
S
Sbjct: 212 FS 213
Score = 44.7 bits (104), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 67/140 (47%), Gaps = 10/140 (7%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+L ++ LS +TD+GLI L+ L +LD +I+D GL+ L +L L
Sbjct: 96 ENLTTLRLSNVPITDAGLIELRSQKKLSTLDLA-GTRITDDGLKELSVHHSLRYLDL-SE 153
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
IT G+K +GL NL+ L+LE GL + L +N++ +TD+ K
Sbjct: 154 TTITGMGLKDLSGLPNLLSLNLENTKVNDTGLECVHEFKHLIRINLRRT-SVTDAGQKAF 212
Query: 177 SGLTNLKSLQISCSKVTDSG 196
S+ + +++ DSG
Sbjct: 213 -------SVSMPNTRIYDSG 225
>gi|85679238|gb|ABC72035.1| InlA [Listeria monocytogenes]
Length = 791
Score = 71.2 bits (173), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 101/312 (32%), Positives = 153/312 (49%), Gaps = 54/312 (17%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
L+ +NL ++F F Q++D + L+ L+ L + NN IT + A L NL L
Sbjct: 93 LEYLNNLTQINFGFN-QLTD--ITPLKDLTKLVDI-VMNNNQIT--DISPLANLTNLTGL 146
Query: 137 DL--ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 194
L + T I L NL L +LE + T SD+ LSGLTNL+ L ++VTD
Sbjct: 147 TLFNNQITDIDA-LKNLTNLNRLE------LSSNTISDISALSGLTNLQQLSFG-NQVTD 198
Query: 195 SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL 254
LK L LT LE +++ + +S L K + + SL
Sbjct: 199 -----LKPLANLTT--LERLDISSNKVSDISVLA------------------KLTNLESL 233
Query: 255 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 314
N N+I+D + L LTNL+ L+L+ + D G L L NL L+L++ Q+
Sbjct: 234 IATN---NQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI-- 284
Query: 315 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 374
S L LSGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L L
Sbjct: 285 SNLAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNL 340
Query: 375 THLDLFGARITD 386
T+L L+ I+D
Sbjct: 341 TYLTLYFNNISD 352
>gi|87308228|ref|ZP_01090370.1| hypothetical protein DSM3645_21562 [Blastopirellula marina DSM
3645]
gi|87289310|gb|EAQ81202.1| hypothetical protein DSM3645_21562 [Blastopirellula marina DSM
3645]
Length = 438
Score = 71.2 bits (173), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 82/307 (26%), Positives = 133/307 (43%), Gaps = 12/307 (3%)
Query: 96 DGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI---HGGLVNLK 152
D G+ + LS L +L + A + +F GL L KL+ T + + L+
Sbjct: 104 DKGIRVVTTLSPLKALLIAKTKASS----DSFFGLEELRKLEQVEFTDLVINQAVIGGLR 159
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
GL L NI+ + S LK+L I K + I + + L L L
Sbjct: 160 GLPNLNQFNIRNSELALPWALDERS-FPQLKTLLIDGGKADAALIGEVCSIPTLQQLQL- 217
Query: 213 GCPV---TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
CPV T L+ L +L L+L R L D+ C ++ ++ LN+G I ++ L
Sbjct: 218 SCPVGQFTINDFRRLADLPNLVDLSLVRSSLPDESCPLATQQLKIQKLNVGQTGIGNQFL 277
Query: 270 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 329
+ NL L+L I D GL L+ L L+ L LS+T + S+ +H S L +L +
Sbjct: 278 STIGDFPNLRELDLTGSKITDGGLAYLSELSQLESLTLSETNISSAAAKHFSQLQSLREL 337
Query: 330 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 389
+L T + ++ +A L +L+ ++L + L L L L + L I +
Sbjct: 338 HLHNTKLDGQAMVDIAKLKNLEWIDLSKSNVQGEQLLELRKLPKLRGVVLMNTPIGAADL 397
Query: 390 AYLRSKF 396
YL+ +
Sbjct: 398 PYLKQLY 404
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 76/335 (22%), Positives = 148/335 (44%), Gaps = 40/335 (11%)
Query: 41 YPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLE 100
+ +DK + V+ + S L ++ ++ + + L++ L+ ++F + I+ +
Sbjct: 99 HESFDDKGIRVVTTL-SPLKALLIAKTKASSDSFFGLEELRKLEQVEFTDLV-INQAVIG 156
Query: 101 HLRGLSNLTSLSFRRNNAITAQGM--KAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158
LRGL NL + R + + ++F L L+ + + G + ++ L +L+
Sbjct: 157 GLRGLPNLNQFNIRNSELALPWALDERSFPQLKTLLIDGGKADAALIGEVCSIPTLQQLQ 216
Query: 159 SLNIKWCNC----ITDSDMKPLSGLTNLKSLQISCSKVTDS----GIAYLKGLQKLTL-- 208
+C T +D + L+ L NL L + S + D LK +QKL +
Sbjct: 217 ------LSCPVGQFTINDFRRLADLPNLVDLSLVRSSLPDESCPLATQQLK-IQKLNVGQ 269
Query: 209 -------------------LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 249
L+L G +T L LS L L L L+ +S + FS
Sbjct: 270 TGIGNQFLSTIGDFPNLRELDLTGSKITDGGLAYLSELSQLESLTLSETNISSAAAKHFS 329
Query: 250 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 309
++ SL+ L+L ++ + +V + L NLE ++L + E L+ L L L+ + L +
Sbjct: 330 QLQSLRELHLHNTKLDGQAMVDIAKLKNLEWIDLSKSNVQGEQLLELRKLPKLRGVVLMN 389
Query: 310 TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 344
T +G++ L +L L +++ I + T +++ KL
Sbjct: 390 TPIGAADLPYLKQLYHIDEIYVEETNLTNEEQIKL 424
>gi|290995863|ref|XP_002680502.1| predicted protein [Naegleria gruberi]
gi|284094123|gb|EFC47758.1| predicted protein [Naegleria gruberi]
Length = 350
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 56/251 (22%), Positives = 120/251 (47%), Gaps = 19/251 (7%)
Query: 134 VKLDLERCTRIHGGLV-NLKGLMKLESLN--IKWCNC----------------ITDSDMK 174
V++D+ + +R+ G + N+ + L ++N I++ + + D + K
Sbjct: 84 VRIDIGKMSRVQGQFLENIASVKALNAINHLIQYRDAFKLMKGLTTFDISYTYVHDREAK 143
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
+S +T L SL +S S IAY + + LT LN+ + C +S + L L+
Sbjct: 144 IISEMTQLTSLNVSNSIRIKKSIAYFREMNNLTCLNIGNNGIGVECAKHVSEMKQLTILH 203
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
+ + +G + S++ L L++ N I ++ ++ L L +L++ S IG +G
Sbjct: 204 ICGNGIKFEGAKFISELQQLTKLDVSSNNIGEQGAKYISQLKQLTNLDIYSNRIGAQGAK 263
Query: 295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 354
+++ + L L +S + G +++S + L ++N++ I D R ++G++ L +L
Sbjct: 264 HISEMKQLTRLNISYNDINVEGAKYISEMKQLINLNITKNNIGDEGARHISGMNQLTNLF 323
Query: 355 LDARQITDTGL 365
+ I++ G
Sbjct: 324 IGNNNISNAGF 334
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 61/279 (21%), Positives = 128/279 (45%), Gaps = 10/279 (3%)
Query: 44 VNDKWMDVIASQGSSL-LSVDLSGSDVTDSGLIHLKDCSNLQSLD-FNFCIQISDGGLEH 101
V+ +W VI + L + +D+ L++ +++++L+ N IQ D +
Sbjct: 67 VSKQWFRVILERLKQLAVRIDIGKMSRVQGQF--LENIASVKALNAINHLIQYRDA-FKL 123
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
++GL+ +S+ + + K + + L L++ RI + + + L LN
Sbjct: 124 MKGLTTF-DISY---TYVHDREAKIISEMTQLTSLNVSNSIRIKKSIAYFREMNNLTCLN 179
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 221
I N I K +S + L L I + + G ++ LQ+LT L++ +
Sbjct: 180 I-GNNGIGVECAKHVSEMKQLTILHICGNGIKFEGAKFISELQQLTKLDVSSNNIGEQGA 238
Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 281
+S L L L++ ++ G + S++ L LN+ +N+I E ++ + L +L
Sbjct: 239 KYISQLKQLTNLDIYSNRIGAQGAKHISEMKQLTRLNISYNDINVEGAKYISEMKQLINL 298
Query: 282 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 320
N+ IGDEG +++G+ L L + + + ++G +++
Sbjct: 299 NITKNNIGDEGARHISGMNQLTNLFIGNNNISNAGFQNI 337
>gi|146095030|ref|XP_001467457.1| hypothetical protein, unknown function [Leishmania infantum JPCM5]
gi|134071822|emb|CAM70515.1| hypothetical protein, unknown function [Leishmania infantum JPCM5]
Length = 811
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 92/168 (54%), Gaps = 9/168 (5%)
Query: 171 SDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 229
+D+ PL T +++L + S V GI L+ L++L ++ PV++ + SLSA S
Sbjct: 620 TDISPLLSCTKIQALILYRSSVRSLDGIGALRQLRRL---DIAETPVSS--IRSLSACQS 674
Query: 230 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 289
L LNL+ + DDG + ++ SL+V+++ F IT L L ++LE L+ SC +
Sbjct: 675 LEILNLSNTAVDDDGFQGIGQVQSLRVVSMSFTAITQ--LGQLGQCSHLEELHAQSCPVT 732
Query: 290 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 337
EGLV L C L L LS T++ SG++ L+ L +N+ FT +
Sbjct: 733 SEGLVGLERACCLVKLNLSYTKL-QSGIQRLTNCRKLLKLNVKFTEVP 779
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 85/356 (23%), Positives = 136/356 (38%), Gaps = 82/356 (23%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
+ C L+S+ + C + D + HL L + L R Q + A GL
Sbjct: 302 IARCCFLRSVHLSGC-NVKDADVPHLAQLPCVEELLLSRTRITNVQALAAGKGL------ 354
Query: 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD-MKPLSGLTNLKSLQISCSKVTDS 195
RI I+ N DSD + L L L L +S + V+D
Sbjct: 355 ------RI-----------------IQLSNAQVDSDGIDGLQTLPYLTRLDLSSTLVSD- 390
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD------------- 242
+ +L Q L LNL VT+ + LS L +L +L LN + D
Sbjct: 391 -VNFLGQSQSLIYLNLAKTHVTSEGIAGLSRLLTLEHLMLNNNNIRDVSFLAESHSLKTL 449
Query: 243 ---------DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
G E F ++ +L+ L+L +T + L+ NL L+L + G+
Sbjct: 450 SLQSTLVDSAGLEGFGRLQTLQDLSLAHTRVTS--VTELQHCHNLWRLDLQGSFVDQAGI 507
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS----LRKLAGLS- 348
L L L+ L LS T V S L + +LE + + F+ +++ S + K + L+
Sbjct: 508 AGLERLPKLRILLLSKTDVAS--LELILKSESLEQLEVKFSHVNEKSAFFGVTKASALTD 565
Query: 349 ------------------SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
L+ LN+ + ++T G+A L L +DL +TD
Sbjct: 566 VTLTHCDVSDINNLGMCKELRLLNVWSSKVTSEGIAGLCEARSLQEVDLAETAVTD 621
Score = 46.6 bits (109), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 90/390 (23%), Positives = 164/390 (42%), Gaps = 68/390 (17%)
Query: 59 LLSVDLSGSDVTDSGLIHLKD-------------CSNLQSLDFN---FCIQISDG----- 97
L SV LSG +V D+ + HL +N+Q+L IQ+S+
Sbjct: 308 LRSVHLSGCNVKDADVPHLAQLPCVEELLLSRTRITNVQALAAGKGLRIIQLSNAQVDSD 367
Query: 98 GLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
G++ L+ L LT L ++ + +L+ L+L + G+ L L+ L
Sbjct: 368 GIDGLQTLPYLTRLDL---SSTLVSDVNFLGQSQSLIYLNLAKTHVTSEGIAGLSRLLTL 424
Query: 158 ESL-----NIKWCNCITDS-------------DMKPLSGLTNLKSLQ-ISCSKVTDSGIA 198
E L NI+ + + +S D L G L++LQ +S + + +
Sbjct: 425 EHLMLNNNNIRDVSFLAESHSLKTLSLQSTLVDSAGLEGFGRLQTLQDLSLAHTRVTSVT 484
Query: 199 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 258
L+ L L+L+G V A + L L L L L++ ++ E K SL+ L
Sbjct: 485 ELQHCHNLWRLDLQGSFVDQAGIAGLERLPKLRILLLSKTDVA--SLELILKSESLEQLE 542
Query: 259 LGFNEITDE-CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN-LKCLELSDTQVGSSG 316
+ F+ + ++ + + L + L C + D +N G+C L+ L + ++V S G
Sbjct: 543 VKFSHVNEKSAFFGVTKASALTDVTLTHCDVSD---INNLGMCKELRLLNVWSSKVTSEG 599
Query: 317 LRHLSGLTNLESINLSFTGISD-----------------GSLRKLAGLSSLKSL-NLDAR 358
+ L +L+ ++L+ T ++D S+R L G+ +L+ L LD
Sbjct: 600 IAGLCEARSLQEVDLAETAVTDISPLLSCTKIQALILYRSSVRSLDGIGALRQLRRLDIA 659
Query: 359 QITDTGLAALTSLTGLTHLDLFGARITDSG 388
+ + + +L++ L L+L + D G
Sbjct: 660 ETPVSSIRSLSACQSLEILNLSNTAVDDDG 689
Score = 45.4 bits (106), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 107/227 (47%), Gaps = 35/227 (15%)
Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMK---LESLNIKWCNCITDSDMKPLSGL---- 179
A L L +LD+ C G + G+ + L S+++ CN + D+D+ L+ L
Sbjct: 279 LASLQKLRRLDMTNCK----GDFDCAGIARCCFLRSVHLSGCN-VKDADVPHLAQLPCVE 333
Query: 180 ---------TNLKSL---------QISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 221
TN+++L Q+S ++V GI L+ L LT L+L V+ +
Sbjct: 334 ELLLSRTRITNVQALAAGKGLRIIQLSNAQVDSDGIDGLQTLPYLTRLDLSSTLVSD--V 391
Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 281
+ L SL YLNL + ++ +G S++ +L+ L L N I D + L +L++L
Sbjct: 392 NFLGQSQSLIYLNLAKTHVTSEGIAGLSRLLTLEHLMLNNNNIRD--VSFLAESHSLKTL 449
Query: 282 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS-SGLRHLSGLTNLE 327
+L S + GL L L+ L L+ T+V S + L+H L L+
Sbjct: 450 SLQSTLVDSAGLEGFGRLQTLQDLSLAHTRVTSVTELQHCHNLWRLD 496
>gi|398020181|ref|XP_003863254.1| hypothetical protein, unknown function [Leishmania donovani]
gi|322501486|emb|CBZ36565.1| hypothetical protein, unknown function [Leishmania donovani]
Length = 811
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 92/168 (54%), Gaps = 9/168 (5%)
Query: 171 SDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 229
+D+ PL T +++L + S V GI L+ L++L ++ PV++ + SLSA S
Sbjct: 620 TDISPLLSCTKIQALILYRSSVRSLDGIGALRQLRRL---DIAETPVSS--IRSLSACQS 674
Query: 230 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 289
L LNL+ + DDG + ++ SL+V+++ F IT L L ++LE L+ SC +
Sbjct: 675 LEILNLSNTAVDDDGFQGIGQVQSLRVVSMSFTAITQ--LGQLGQCSHLEELHAQSCPVT 732
Query: 290 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 337
EGLV L C L L LS T++ SG++ L+ L +N+ FT +
Sbjct: 733 SEGLVGLERACCLVKLNLSYTKL-QSGIQRLTNCRKLLKLNVKFTEVP 779
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 85/356 (23%), Positives = 136/356 (38%), Gaps = 82/356 (23%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
+ C L+S+ + C + D + HL L + L R Q + A GL
Sbjct: 302 IARCCFLRSVHLSGC-NVKDADVPHLAQLPCVEELLLSRTRITNVQALAAGKGL------ 354
Query: 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD-MKPLSGLTNLKSLQISCSKVTDS 195
RI I+ N DSD + L L L L +S + V+D
Sbjct: 355 ------RI-----------------IQLSNAQVDSDGIDGLQTLPYLTRLDLSSTLVSD- 390
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD------------- 242
+ +L Q L LNL VT+ + LS L +L +L LN + D
Sbjct: 391 -VNFLGQSQSLIYLNLAKTHVTSEGIAGLSRLLTLEHLMLNNNNIRDVSFLAESHSLKTL 449
Query: 243 ---------DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
G E F ++ +L+ L+L +T + L+ NL L+L + G+
Sbjct: 450 SLQSTLVDSAGLEGFGRLQTLQDLSLAHTRVTS--VTELQHCHNLWRLDLQGSFVDQAGI 507
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS----LRKLAGLS- 348
L L L+ L LS T V S L + +LE + + F+ +++ S + K + L+
Sbjct: 508 AGLERLPKLRILLLSKTDVAS--LELILKSESLEQLEVKFSHVNEKSAFFGVTKASALTD 565
Query: 349 ------------------SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
L+ LN+ + ++T G+A L L +DL +TD
Sbjct: 566 VTLTHCDVSDINNLGMCKELRLLNVWSSKVTSEGIAGLCEARSLQEVDLAETAVTD 621
Score = 46.6 bits (109), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 90/390 (23%), Positives = 164/390 (42%), Gaps = 68/390 (17%)
Query: 59 LLSVDLSGSDVTDSGLIHLKD-------------CSNLQSLDFN---FCIQISDG----- 97
L SV LSG +V D+ + HL +N+Q+L IQ+S+
Sbjct: 308 LRSVHLSGCNVKDADVPHLAQLPCVEELLLSRTRITNVQALAAGKGLRIIQLSNAQVDSD 367
Query: 98 GLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
G++ L+ L LT L ++ + +L+ L+L + G+ L L+ L
Sbjct: 368 GIDGLQTLPYLTRLDL---SSTLVSDVNFLGQSQSLIYLNLAKTHVTSEGIAGLSRLLTL 424
Query: 158 ESL-----NIKWCNCITDS-------------DMKPLSGLTNLKSLQ-ISCSKVTDSGIA 198
E L NI+ + + +S D L G L++LQ +S + + +
Sbjct: 425 EHLMLNNNNIRDVSFLAESHSLKTLSLQSTLVDSAGLEGFGRLQTLQDLSLAHTRVTSVT 484
Query: 199 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 258
L+ L L+L+G V A + L L L L L++ ++ E K SL+ L
Sbjct: 485 ELQHCHNLWRLDLQGSFVDQAGIAGLERLPKLRILLLSKTDVA--SLELILKSESLEQLE 542
Query: 259 LGFNEITDE-CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN-LKCLELSDTQVGSSG 316
+ F+ + ++ + + L + L C + D +N G+C L+ L + ++V S G
Sbjct: 543 VKFSHVNEKSAFFGVTKASALTDVTLTHCDVSD---INNLGMCKELRLLNVWSSKVTSEG 599
Query: 317 LRHLSGLTNLESINLSFTGISD-----------------GSLRKLAGLSSLKSL-NLDAR 358
+ L +L+ ++L+ T ++D S+R L G+ +L+ L LD
Sbjct: 600 IAGLCEARSLQEVDLAETAVTDISPLLSCTKIQALILYRSSVRSLDGIGALRQLRRLDIA 659
Query: 359 QITDTGLAALTSLTGLTHLDLFGARITDSG 388
+ + + +L++ L L+L + D G
Sbjct: 660 ETPVSSIRSLSACQSLEILNLSNTAVDDDG 689
Score = 45.4 bits (106), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 107/227 (47%), Gaps = 35/227 (15%)
Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMK---LESLNIKWCNCITDSDMKPLSGL---- 179
A L L +LD+ C G + G+ + L S+++ CN + D+D+ L+ L
Sbjct: 279 LASLQKLRRLDMTNCK----GDFDCAGIARCCFLRSVHLSGCN-VKDADVPHLAQLPCVE 333
Query: 180 ---------TNLKSL---------QISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 221
TN+++L Q+S ++V GI L+ L LT L+L V+ +
Sbjct: 334 ELLLSRTRITNVQALAAGKGLRIIQLSNAQVDSDGIDGLQTLPYLTRLDLSSTLVSD--V 391
Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 281
+ L SL YLNL + ++ +G S++ +L+ L L N I D + L +L++L
Sbjct: 392 NFLGQSQSLIYLNLAKTHVTSEGIAGLSRLLTLEHLMLNNNNIRD--VSFLAESHSLKTL 449
Query: 282 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS-SGLRHLSGLTNLE 327
+L S + GL L L+ L L+ T+V S + L+H L L+
Sbjct: 450 SLQSTLVDSAGLEGFGRLQTLQDLSLAHTRVTSVTELQHCHNLWRLD 496
>gi|219821258|gb|ACL37750.1| internalin A [Listeria monocytogenes]
Length = 739
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 101/312 (32%), Positives = 153/312 (49%), Gaps = 54/312 (17%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
L+ +NL ++F F Q++D + L+ L+ L + NN IT + A L NL L
Sbjct: 36 LEYLNNLTQINFGFN-QLTD--ITPLKDLTKLVDI-VMNNNQIT--DISPLANLTNLTGL 89
Query: 137 DL--ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 194
L + T I L NL L +LE + T SD+ LSGLTNL+ L ++VTD
Sbjct: 90 TLFNNQITDIDA-LKNLTNLNRLE------LSSNTISDISALSGLTNLQQLSFG-NQVTD 141
Query: 195 SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL 254
LK L LT LE +++ + +S L K + + SL
Sbjct: 142 -----LKPLANLTT--LERLDISSNKVSDISVLA------------------KLTNLESL 176
Query: 255 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 314
N N+I+D + L LTNL+ L+L+ + D G L L NL L+L++ Q+
Sbjct: 177 IATN---NQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI-- 227
Query: 315 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 374
S L LSGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L L
Sbjct: 228 SNLAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNL 283
Query: 375 THLDLFGARITD 386
T+L L+ I+D
Sbjct: 284 TYLTLYFNNISD 295
>gi|320163976|gb|EFW40875.1| tyrosine-protein kinase CSK [Capsaspora owczarzaki ATCC 30864]
Length = 1378
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 83/275 (30%), Positives = 121/275 (44%), Gaps = 5/275 (1%)
Query: 113 FRRNNAITAQGMKAFAGL--INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD 170
+ ++N IT AF GL + ++ L + I G GL L +++ + N IT
Sbjct: 65 YLQSNLITNIPASAFTGLTALQVIYLTSNQIVSISSGA--FSGLSALTYVSL-FNNLITS 121
Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
+ LT L L + + +T GL LT L+L G +T+ ++ S L +L
Sbjct: 122 IPDSLFADLTALTYLGLHGNLITSMAATAFTGLNVLTRLSLYGNQITSISANAFSNLPAL 181
Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
L L QL+ + F+ + +L L L NEIT L L L+LDS I D
Sbjct: 182 TTLALYDNQLTSIPADAFTGLSALTELTLYDNEITSISANSFTSLPALIILSLDSNRITD 241
Query: 291 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 350
TGL L L LS Q+ S +GL+ L+S+ L I+ + GL +L
Sbjct: 242 ISANAFTGLTALNILYLSHNQLSSISANAFTGLSGLDSLTLFNNEITSIHVDAFTGLPAL 301
Query: 351 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
SL L + IT T+LT L L L +IT
Sbjct: 302 TSLYLQSNLITSIPPFVFTNLTALQILVLAYNQIT 336
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 90/321 (28%), Positives = 131/321 (40%), Gaps = 40/321 (12%)
Query: 89 NFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGL 148
N + IS G GLS LT +S NN IT+ FA L L L L HG L
Sbjct: 93 NQIVSISSGAFS---GLSALTYVSLF-NNLITSIPDSLFADLTALTYLGL------HGNL 142
Query: 149 VNLKGLMKLESLNIK-----WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGL 203
+ LN+ + N IT S L L +L + +++T GL
Sbjct: 143 ITSMAATAFTGLNVLTRLSLYGNQITSISANAFSNLPALTTLALYDNQLTSIPADAFTGL 202
Query: 204 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE 263
LT L L +T+ +S ++L +L L+L+ +++D F+ + +L +L L N+
Sbjct: 203 SALTELTLYDNEITSISANSFTSLPALIILSLDSNRITDISANAFTGLTALNILYLSHNQ 262
Query: 264 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 323
++ GL+ L+SL L + I + TGL L L L + S + L
Sbjct: 263 LSSISANAFTGLSGLDSLTLFNNEITSIHVDAFTGLPALTSLYLQSNLITSIPPFVFTNL 322
Query: 324 TNLESINLSF---TGISDGSL----------------------RKLAGLSSLKSLNLDAR 358
T L+ + L++ TGI + AGL SL SL L
Sbjct: 323 TALQILVLAYNQITGIPANAFTADLAALNYLDVSENQVTSIPANAFAGLHSLSSLFLQGN 382
Query: 359 QITDTGLAALTSLTGLTHLDL 379
QIT + LT LTHL L
Sbjct: 383 QITSILTSTFQGLTALTHLIL 403
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 81/185 (43%), Gaps = 3/185 (1%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
QI+ GLS LT L NN IT+ AF GL + +L+L+ +
Sbjct: 548 QITSIPASAFAGLSALTIL-IMFNNKITSIDTDAFTGLTAMSQLNLQDNNLASIPASAIA 606
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
GL L+ L++ N ITD +GLT L L ++ +++T L L + L
Sbjct: 607 GLTALKFLDLS-NNKITDISSSEFTGLTALNYLWLNSNRITSISANAFTSLPALAFVWLR 665
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
+TA ++ + + +L YL+L +++ F+ + +L L L N T
Sbjct: 666 ANWITAISANAFAGV-TLTYLDLQNNRITSIPANAFTSLTALNTLTLNDNPFTTLPPGLF 724
Query: 273 KGLTN 277
KGL N
Sbjct: 725 KGLPN 729
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 70/158 (44%), Gaps = 3/158 (1%)
Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
YL N Q++ F+ + +L +L + N+IT GLT + LNL +
Sbjct: 543 YLQAN--QITSIPASAFAGLSALTILIMFNNKITSIDTDAFTGLTAMSQLNLQDNNLASI 600
Query: 292 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 351
+ GL LK L+LS+ ++ +GLT L + L+ I+ S L +L
Sbjct: 601 PASAIAGLTALKFLDLSNNKITDISSSEFTGLTALNYLWLNSNRITSISANAFTSLPALA 660
Query: 352 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 389
+ L A IT A +T LT+LDL RIT A
Sbjct: 661 FVWLRANWITAISANAFAGVT-LTYLDLQNNRITSIPA 697
Score = 42.4 bits (98), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 81/187 (43%), Gaps = 1/187 (0%)
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
P + +N ++ + +++T + GL LT+L + +T+ D+ + L ++ LN
Sbjct: 532 PSAMPSNTLTVYLQANQITSIPASAFAGLSALTILIMFNNKITSIDTDAFTGLTAMSQLN 591
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
L L+ + + +LK L+L N+ITD GLT L L L+S I
Sbjct: 592 LQDNNLASIPASAIAGLTALKFLDLSNNKITDISSSEFTGLTALNYLWLNSNRITSISAN 651
Query: 295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 354
T L L + L + + +G+T L ++L I+ L++L +L
Sbjct: 652 AFTSLPALAFVWLRANWITAISANAFAGVT-LTYLDLQNNRITSIPANAFTSLTALNTLT 710
Query: 355 LDARQIT 361
L+ T
Sbjct: 711 LNDNPFT 717
Score = 39.7 bits (91), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 69/174 (39%), Gaps = 3/174 (1%)
Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 275
+ A+ L+AL + YL N Q+ FS + +L ++L N IT L
Sbjct: 74 IPASAFTGLTAL-QVIYLTSN--QIVSISSGAFSGLSALTYVSLFNNLITSIPDSLFADL 130
Query: 276 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 335
T L L L I TGL L L L Q+ S S L L ++ L
Sbjct: 131 TALTYLGLHGNLITSMAATAFTGLNVLTRLSLYGNQITSISANAFSNLPALTTLALYDNQ 190
Query: 336 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 389
++ GLS+L L L +IT + TSL L L L RITD A
Sbjct: 191 LTSIPADAFTGLSALTELTLYDNEITSISANSFTSLPALIILSLDSNRITDISA 244
>gi|344270426|ref|XP_003407045.1| PREDICTED: F-box/LRR-repeat protein 13 [Loxodonta africana]
Length = 680
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 112/419 (26%), Positives = 191/419 (45%), Gaps = 67/419 (15%)
Query: 20 LTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHL- 77
L +L++ C LQ+L + P + D+ M I+ +L ++LS + +T+ + L
Sbjct: 178 LKPKTLKSVSHCRNLQELNVSDCPTLTDESMRHISEGCPGVLYLNLSNTGITNRTMRLLP 237
Query: 78 KDCSNLQSLDFNFCIQISDGGLEHL---RGLSNLTSLSFRRNNAITAQGMKAFA----GL 130
++ NLQ+L +C + +D GL++L +G LT L I+ QG + A G+
Sbjct: 238 RNFHNLQNLSLAYCRKFTDKGLQYLNLGKGCHKLTYLDLSGCTQISVQGFRNIANSCSGI 297
Query: 131 INL------------VKLDLERCTRI---------HGGLVNLKGLM--KLESLNIKWCNC 167
++L VK +E+C+RI H K L L + +
Sbjct: 298 MHLTINDMPTLTDKCVKALVEKCSRITSVVFIGAPHISDCAFKALSTCNLRKIRFEGNKR 357
Query: 168 ITDSDMKPL-SGLTNLKSL-QISCSKVTDSGIAYLKGLQKLTLLNLEGC----------- 214
ITDS K + N++ + + C +TD + L L++LT+LNL C
Sbjct: 358 ITDSCFKFIDKHYPNIRHIYMVDCKGLTDGSLKSLSVLKQLTVLNLANCVGIGDVGLKQL 417
Query: 215 ---PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFS-KIGSLKVLNL-GFNEITDEC 268
PV+ + LNLN C L D + S + +L LNL +TD
Sbjct: 418 LDGPVSTKIRE----------LNLNNCIHLGDASIVRLSERCPNLNYLNLRNCEHLTDLG 467
Query: 269 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHL-SGLTNL 326
+ H+ + +L S++L I +EGL+ L+ LK L LS+ ++ G++ G L
Sbjct: 468 IEHIVNIFSLVSVDLSGTVISNEGLMTLSRHKKLKELSLSECYKITDMGIQAFCKGSLIL 527
Query: 327 ESINLSF-TGISDGSLRKLAGLS-SLKSLNLDA-RQITDTGLAALTSLTGLTH-LDLFG 381
E +++S+ +SD ++ LA SL SL++ +ITD+ + L++ H LD+ G
Sbjct: 528 EHLDVSYCPQLSDEIIKALAIYCISLTSLSIAGCPKITDSAMELLSAKCHYLHILDISG 586
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 88/351 (25%), Positives = 148/351 (42%), Gaps = 79/351 (22%)
Query: 117 NAITAQGMKAFA-----------GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC 165
NAI MK+ A +N+++L+ C L ++ L+ LN+ C
Sbjct: 141 NAIDFSTMKSMAIDKYITSTLQRWRLNVLRLNFRGCLLKPKTLKSVSHCRNLQELNVSDC 200
Query: 166 NCITDSDMKPLS--------------GLT------------NLKSLQIS-CSKVTDSGIA 198
+TD M+ +S G+T NL++L ++ C K TD G+
Sbjct: 201 PTLTDESMRHISEGCPGVLYLNLSNTGITNRTMRLLPRNFHNLQNLSLAYCRKFTDKGLQ 260
Query: 199 YL---KGLQKLTLLNLEGC-PVTAACLDSLS-ALGSLFYLNLNRCQLSDDGC-----EKF 248
YL KG KLT L+L GC ++ +++ + + +L +N D C EK
Sbjct: 261 YLNLGKGCHKLTYLDLSGCTQISVQGFRNIANSCSGIMHLTINDMPTLTDKCVKALVEKC 320
Query: 249 SKIGSL----------------------KVLNLGFNEITDECLVHL-KGLTNLESLNLDS 285
S+I S+ K+ G ITD C + K N+ + +
Sbjct: 321 SRITSVVFIGAPHISDCAFKALSTCNLRKIRFEGNKRITDSCFKFIDKHYPNIRHIYMVD 380
Query: 286 C-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHL---SGLTNLESINL-SFTGISDG 339
C G+ D L +L+ L L L L++ +G GL+ L T + +NL + + D
Sbjct: 381 CKGLTDGSLKSLSVLKQLTVLNLANCVGIGDVGLKQLLDGPVSTKIRELNLNNCIHLGDA 440
Query: 340 SLRKLAGL-SSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARITDSG 388
S+ +L+ +L LNL + +TD G+ + ++ L +DL G I++ G
Sbjct: 441 SIVRLSERCPNLNYLNLRNCEHLTDLGIEHIVNIFSLVSVDLSGTVISNEG 491
Score = 42.4 bits (98), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 77/163 (47%), Gaps = 31/163 (19%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
SL+SVDLSG+ +++ GL+ L L+ L + C +I+D G++
Sbjct: 476 SLVSVDLSGTVISNEGLMTLSRHKKLKELSLSECYKITDMGIQ----------------- 518
Query: 118 AITAQGMKAF-AGLINLVKLDLERCTRIHGGLVNLKGL--MKLESLNIKWCNCITDSDMK 174
AF G + L LD+ C ++ ++ + + L SL+I C ITDS M+
Sbjct: 519 --------AFCKGSLILEHLDVSYCPQLSDEIIKALAIYCISLTSLSIAGCPKITDSAME 570
Query: 175 PLSGLTN-LKSLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGC 214
LS + L L IS C +TD + L +G +L +L + C
Sbjct: 571 LLSAKCHYLHILDISGCILLTDQILENLQRGCNQLRILKMRYC 613
>gi|290993148|ref|XP_002679195.1| predicted protein [Naegleria gruberi]
gi|284092811|gb|EFC46451.1| predicted protein [Naegleria gruberi]
Length = 311
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 94/180 (52%)
Query: 195 SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL 254
I ++ +++LT L++ + +S + L LN+ ++ D+G + S++ L
Sbjct: 121 ENIKFISEMKQLTSLDVSDNEIGNVGAKHISEMKQLTSLNICNNRIGDEGAKFISEMQQL 180
Query: 255 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 314
+L++ N I D+ + + + L S N+ IG+ G +++ + L L++SD +G
Sbjct: 181 TLLDISDNHIGDKGVKFISEMKQLTSFNISDDLIGNVGAKSISEMQQLTSLDVSDNHIGD 240
Query: 315 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 374
SG++ +S + L S+N++ + D + ++ + L+SLN+ ++ D G+ ++ + L
Sbjct: 241 SGVKFISEMKQLTSLNIAINRVGDEGAKLISEMKQLRSLNISDNELGDEGVKFISEMKQL 300
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 77/144 (53%)
Query: 249 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 308
S++ L L++ NEI + H+ + L SLN+ + IGDEG ++ + L L++S
Sbjct: 127 SEMKQLTSLDVSDNEIGNVGAKHISEMKQLTSLNICNNRIGDEGAKFISEMQQLTLLDIS 186
Query: 309 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 368
D +G G++ +S + L S N+S I + + ++ + L SL++ I D+G+ +
Sbjct: 187 DNHIGDKGVKFISEMKQLTSFNISDDLIGNVGAKSISEMQQLTSLDVSDNHIGDSGVKFI 246
Query: 369 TSLTGLTHLDLFGARITDSGAAYL 392
+ + LT L++ R+ D GA +
Sbjct: 247 SEMKQLTSLNIAINRVGDEGAKLI 270
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 80/155 (51%)
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
K +S + L SL I +++ D G ++ +Q+LTLL++ + + +S + L
Sbjct: 148 KHISEMKQLTSLNICNNRIGDEGAKFISEMQQLTLLDISDNHIGDKGVKFISEMKQLTSF 207
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
N++ + + G + S++ L L++ N I D + + + L SLN+ +GDEG
Sbjct: 208 NISDDLIGNVGAKSISEMQQLTSLDVSDNHIGDSGVKFISEMKQLTSLNIAINRVGDEGA 267
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 328
++ + L+ L +SD ++G G++ +S + L S
Sbjct: 268 KLISEMKQLRSLNISDNELGDEGVKFISEMKQLRS 302
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 85/169 (50%)
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
+S + L L+++ ++ + G + S++ L LN+ N I DE + + L L++
Sbjct: 126 ISEMKQLTSLDVSDNEIGNVGAKHISEMKQLTSLNICNNRIGDEGAKFISEMQQLTLLDI 185
Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
IGD+G+ ++ + L +SD +G+ G + +S + L S+++S I D ++
Sbjct: 186 SDNHIGDKGVKFISEMKQLTSFNISDDLIGNVGAKSISEMQQLTSLDVSDNHIGDSGVKF 245
Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
++ + L SLN+ ++ D G ++ + L L++ + D G ++
Sbjct: 246 ISEMKQLTSLNIAINRVGDEGAKLISEMKQLRSLNISDNELGDEGVKFI 294
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/195 (21%), Positives = 98/195 (50%), Gaps = 2/195 (1%)
Query: 160 LNIKWCNCITD--SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
+N+K+ + + ++K +S + L SL +S +++ + G ++ +++LT LN+ +
Sbjct: 108 VNVKFNEMLLELRENIKFISEMKQLTSLDVSDNEIGNVGAKHISEMKQLTSLNICNNRIG 167
Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 277
+S + L L+++ + D G + S++ L N+ + I + + +
Sbjct: 168 DEGAKFISEMQQLTLLDISDNHIGDKGVKFISEMKQLTSFNISDDLIGNVGAKSISEMQQ 227
Query: 278 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 337
L SL++ IGD G+ ++ + L L ++ +VG G + +S + L S+N+S +
Sbjct: 228 LTSLDVSDNHIGDSGVKFISEMKQLTSLNIAINRVGDEGAKLISEMKQLRSLNISDNELG 287
Query: 338 DGSLRKLAGLSSLKS 352
D ++ ++ + L+S
Sbjct: 288 DEGVKFISEMKQLRS 302
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 74/140 (52%), Gaps = 3/140 (2%)
Query: 256 VLNLGFNEITDECLVHLKGLTNLE---SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 312
++N+ FNE+ E ++K ++ ++ SL++ IG+ G +++ + L L + + ++
Sbjct: 107 IVNVKFNEMLLELRENIKFISEMKQLTSLDVSDNEIGNVGAKHISEMKQLTSLNICNNRI 166
Query: 313 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 372
G G + +S + L +++S I D ++ ++ + L S N+ I + G +++ +
Sbjct: 167 GDEGAKFISEMQQLTLLDISDNHIGDKGVKFISEMKQLTSFNISDDLIGNVGAKSISEMQ 226
Query: 373 GLTHLDLFGARITDSGAAYL 392
LT LD+ I DSG ++
Sbjct: 227 QLTSLDVSDNHIGDSGVKFI 246
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 82/163 (50%), Gaps = 2/163 (1%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
+I + G +H+ + LTSL+ NN I +G K + + L LD+ G+ +
Sbjct: 141 EIGNVGAKHISEMKQLTSLNIC-NNRIGDEGAKFISEMQQLTLLDISDNHIGDKGVKFIS 199
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
+ +L S NI + I + K +S + L SL +S + + DSG+ ++ +++LT LN+
Sbjct: 200 EMKQLTSFNIS-DDLIGNVGAKSISEMQQLTSLDVSDNHIGDSGVKFISEMKQLTSLNIA 258
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
V +S + L LN++ +L D+G + S++ L+
Sbjct: 259 INRVGDEGAKLISEMKQLRSLNISDNELGDEGVKFISEMKQLR 301
>gi|320163290|gb|EFW40189.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 830
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 89/327 (27%), Positives = 138/327 (42%), Gaps = 9/327 (2%)
Query: 63 DLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQ 122
DL +D+T + + L+SL QI+ GL LT L+ RRN ++A
Sbjct: 18 DLYFTDITSIPAGTFANLTALESLSL-VSGQITSVSPNAFAGLVALTELNLRRN-PLSAV 75
Query: 123 GMKAFAGLINLVKLDL---ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGL 179
AF GL L +L+L E T +L L L SL I ++ L L
Sbjct: 76 PTSAFTGLTALQRLNLDHNEITTLSANAFPHLPALTSL-SLTDNQLTTIPENAFAGLGAL 134
Query: 180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 239
TNL + + + ++ A GL LT L L + + S + L L L +N
Sbjct: 135 TNLDLTENQLTTIPENAFA---GLGALTNLQLPSNKIVSMAAISFTGLAGLTTLIMNNNL 191
Query: 240 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 299
++ + +L+VL+L +N IT GL +L SL++ + + L L
Sbjct: 192 VTTIPENALPGLAALEVLDLRYNSITSVSGNAFAGLLSLRSLDISANAFAGLTALTLFNL 251
Query: 300 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 359
L L L + + S SGL+ L ++L++ ++ S +GLS+L SL L+
Sbjct: 252 TALHTLTLENNLLTSISANAFSGLSALTWLHLAYNRLTSISANAFSGLSALSSLYLNNNP 311
Query: 360 ITDTGLAALTSLTGLTHLDLFGARITD 386
T A LT L L L ++T
Sbjct: 312 CTAIAAEAFNGLTSLKSLTLVANQLTS 338
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 85/286 (29%), Positives = 122/286 (42%), Gaps = 6/286 (2%)
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER--CTRIHGGLVNLKGLMKLES 159
GL LT+L N I + +F GL L L + T I L GL LE
Sbjct: 152 FAGLGALTNLQLPSNK-IVSMAAISFTGLAGLTTLIMNNNLVTTIPENA--LPGLAALEV 208
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
L++++ N IT +GL +L+SL IS + L L L L LE +T+
Sbjct: 209 LDLRY-NSITSVSGNAFAGLLSLRSLDISANAFAGLTALTLFNLTALHTLTLENNLLTSI 267
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
++ S L +L +L+L +L+ FS + +L L L N T GLT+L+
Sbjct: 268 SANAFSGLSALTWLHLAYNRLTSISANAFSGLSALSSLYLNNNPCTAIAAEAFNGLTSLK 327
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
SL L + + GL L L L + ++ S +GL L +++ I+
Sbjct: 328 SLTLVANQLTSISANAFVGLNALTYLYLQNNRIVSFSADAFTGLPVLIYLDIYSNPITSI 387
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
GL+ L L LD QIT A T L+ L L L RIT
Sbjct: 388 PSNAFTGLTKLVFLRLDTNQITSISANAFTELSALRGLWLHSNRIT 433
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 90/283 (31%), Positives = 120/283 (42%), Gaps = 12/283 (4%)
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVNLKGLMKLES 159
GL+ LT+L NN +T A GL L LDL T + G GL+ L S
Sbjct: 176 FTGLAGLTTL-IMNNNLVTTIPENALPGLAALEVLDLRYNSITSVSGNA--FAGLLSLRS 232
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG---CPV 216
L+I N L LT L +L + + +T GL LT L+L +
Sbjct: 233 LDIS-ANAFAGLTALTLFNLTALHTLTLENNLLTSISANAFSGLSALTWLHLAYNRLTSI 291
Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 276
+A LSAL SL YLN N C + E F+ + SLK L L N++T GL
Sbjct: 292 SANAFSGLSALSSL-YLNNNPC--TAIAAEAFNGLTSLKSLTLVANQLTSISANAFVGLN 348
Query: 277 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 336
L L L + I TGL L L++ + S +GLT L + L I
Sbjct: 349 ALTYLYLQNNRIVSFSADAFTGLPVLIYLDIYSNPITSIPSNAFTGLTKLVFLRLDTNQI 408
Query: 337 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
+ S LS+L+ L L + +IT A LT LT+L L
Sbjct: 409 TSISANAFTELSALRGLWLHSNRITTLSANAFIGLTALTNLPL 451
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 78/264 (29%), Positives = 113/264 (42%), Gaps = 6/264 (2%)
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK--GLMKLES 159
L GL+ L L R N +IT+ AFAGL++L LD+ GL L L L +
Sbjct: 200 LPGLAALEVLDLRYN-SITSVSGNAFAGLLSLRSLDISA--NAFAGLTALTLFNLTALHT 256
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
L ++ N +T SGL+ L L ++ +++T GL L+ L L P TA
Sbjct: 257 LTLE-NNLLTSISANAFSGLSALTWLHLAYNRLTSISANAFSGLSALSSLYLNNNPCTAI 315
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
++ + L SL L L QL+ F + +L L L N I GL L
Sbjct: 316 AAEAFNGLTSLKSLTLVANQLTSISANAFVGLNALTYLYLQNNRIVSFSADAFTGLPVLI 375
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L++ S I TGL L L L Q+ S + L+ L + L I+
Sbjct: 376 YLDIYSNPITSIPSNAFTGLTKLVFLRLDTNQITSISANAFTELSALRGLWLHSNRITTL 435
Query: 340 SLRKLAGLSSLKSLNLDARQITDT 363
S GL++L +L L+ +T T
Sbjct: 436 SANAFIGLTALTNLPLNDNPLTTT 459
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 78/263 (29%), Positives = 112/263 (42%), Gaps = 17/263 (6%)
Query: 83 LQSLDFNFCIQISDGGLEHLRGLS--NLTSLSFR--RNNAITAQGMKAFAGLINLVKLDL 138
L+SLD IS L L+ NLT+L NN +T+ AF+GL L L L
Sbjct: 230 LRSLD------ISANAFAGLTALTLFNLTALHTLTLENNLLTSISANAFSGLSALTWLHL 283
Query: 139 --ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG 196
R T I GL L SL + C T + +GLT+LKSL + +++T
Sbjct: 284 AYNRLTSISANA--FSGLSALSSLYLNNNPC-TAIAAEAFNGLTSLKSLTLVANQLTSIS 340
Query: 197 IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 256
GL LT L L+ + + D+ + L L YL++ ++ F+ + L
Sbjct: 341 ANAFVGLNALTYLYLQNNRIVSFSADAFTGLPVLIYLDIYSNPITSIPSNAFTGLTKLVF 400
Query: 257 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 316
L L N+IT L+ L L L S I GL L L L+D + ++
Sbjct: 401 LRLDTNQITSISANAFTELSALRGLWLHSNRITTLSANAFIGLTALTNLPLNDNPLTTTP 460
Query: 317 LRHLSGLTNLESINLSFTGISDG 339
GL N S+ LS++ S G
Sbjct: 461 PGLFKGLPN--SLFLSYSSNSYG 481
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 90/216 (41%), Gaps = 7/216 (3%)
Query: 180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 239
TN + + +T L L L+L +T+ ++ + L +L LNL R
Sbjct: 12 TNTTQFDLYFTDITSIPAGTFANLTALESLSLVSGQITSVSPNAFAGLVALTELNLRRNP 71
Query: 240 LSDDGCEKFSKIGSLKVLNLGFNEITD---ECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
LS F+ + +L+ LNL NEIT HL LT+L + I + L
Sbjct: 72 LSAVPTSAFTGLTALQRLNLDHNEITTLSANAFPHLPALTSLSLTDNQLTTIPENAFAGL 131
Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
L NL E T + + L LTNL+ + ++ S LAGL++L ++
Sbjct: 132 GALTNLDLTENQLTTIPENAFAGLGALTNLQLPSNKIVSMAAISFTGLAGLTTLI---MN 188
Query: 357 ARQITDTGLAALTSLTGLTHLDLFGARITD-SGAAY 391
+T AL L L LDL IT SG A+
Sbjct: 189 NNLVTTIPENALPGLAALEVLDLRYNSITSVSGNAF 224
>gi|47091400|ref|ZP_00229197.1| internalin E [Listeria monocytogenes str. 4b H7858]
gi|417314312|ref|ZP_12101013.1| internalin E [Listeria monocytogenes J1816]
gi|47020077|gb|EAL10813.1| internalin E [Listeria monocytogenes str. 4b H7858]
gi|328467873|gb|EGF38913.1| internalin E [Listeria monocytogenes J1816]
Length = 499
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 70/213 (32%), Positives = 106/213 (49%), Gaps = 38/213 (17%)
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
LTNL L+++ +++TD ++ L L K+T L L G P L +SAL L
Sbjct: 95 LTNLSELELTDNQITD--VSPLANLTKITELGLSGNP-----LKDVSALAGL-------- 139
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
SL ++L + +ITD + L+GLTNL+ LNLD I D + L
Sbjct: 140 -------------KSLTTMHLIYTDITD--VTPLEGLTNLQELNLDINQITD--ISPLAA 182
Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
L NL+ L L TQV S L ++ L+ L +N + +SD + LA LSSL + L
Sbjct: 183 LTNLQTLSLGYTQV--SDLTPIANLSKLTILNAENSKVSD--ISPLASLSSLTEVYLREN 238
Query: 359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
QI+D ++ L ++ L+ ++L IT+ Y
Sbjct: 239 QISD--VSPLANIPNLSIIELTDQIITNQPVYY 269
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 69/122 (56%), Gaps = 17/122 (13%)
Query: 274 GLTNLESL----NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG-----LRHLSGLT 324
G+T +E + NL + D + +++ L NL + T++G SG + L+GL
Sbjct: 85 GITTIEGMQYLTNLSELELTDNQITDVSPLANLTKI----TELGLSGNPLKDVSALAGLK 140
Query: 325 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 384
+L +++L +T I+D + L GL++L+ LNLD QITD ++ L +LT L L L ++
Sbjct: 141 SLTTMHLIYTDITD--VTPLEGLTNLQELNLDINQITD--ISPLAALTNLQTLSLGYTQV 196
Query: 385 TD 386
+D
Sbjct: 197 SD 198
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 64/258 (24%), Positives = 113/258 (43%), Gaps = 46/258 (17%)
Query: 37 CLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQIS- 95
+ Q +N+ + D + + L L +DVTD + D + Q+S
Sbjct: 35 VIEQPTPINEIFTDPVVADNVKTL---LEKADVTDE----------VTQTDLDSITQLSA 81
Query: 96 -DGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL-DLERCTRIHGGLVNLKG 153
G+ + G+ LT+LS +T + + L NL K+ +L + L G
Sbjct: 82 KSAGITTIEGMQYLTNLSELE---LTDNQITDVSPLANLTKITELGLSGNPLKDVSALAG 138
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQ-------- 204
L L ++++ + + +D+ PL GLTNL+ L + +++TD S +A L LQ
Sbjct: 139 LKSLTTMHLIYTDI---TDVTPLEGLTNLQELNLDINQITDISPLAALTNLQTLSLGYTQ 195
Query: 205 -----------KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS 253
KLT+LN E V + + L++L SL + L Q+SD + I +
Sbjct: 196 VSDLTPIANLSKLTILNAENSKV--SDISPLASLSSLTEVYLRENQISD--VSPLANIPN 251
Query: 254 LKVLNLGFNEITDECLVH 271
L ++ L IT++ + +
Sbjct: 252 LSIIELTDQIITNQPVYY 269
>gi|46906504|ref|YP_012893.1| internalin E [Listeria monocytogenes serotype 4b str. F2365]
gi|254825685|ref|ZP_05230686.1| internalin E [Listeria monocytogenes FSL J1-194]
gi|405751488|ref|YP_006674953.1| internalin E [Listeria monocytogenes SLCC2378]
gi|424713136|ref|YP_007013851.1| Internalin-A [Listeria monocytogenes serotype 4b str. LL195]
gi|46879769|gb|AAT03070.1| internalin E [Listeria monocytogenes serotype 4b str. F2365]
gi|293594929|gb|EFG02690.1| internalin E [Listeria monocytogenes FSL J1-194]
gi|404220688|emb|CBY72051.1| internalin E (LPXTG motif) [Listeria monocytogenes SLCC2378]
gi|424012320|emb|CCO62860.1| Internalin-A [Listeria monocytogenes serotype 4b str. LL195]
Length = 499
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 72/213 (33%), Positives = 106/213 (49%), Gaps = 38/213 (17%)
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
LTNL L+++ +++TD ++ L L K+T L L G P L +SAL L
Sbjct: 95 LTNLSELELTDNQITD--VSPLANLTKITELGLSGNP-----LKDVSALAGL-------- 139
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
SLK+L+L + +ITD + L GLTNL+ LNLD I D + L
Sbjct: 140 -------------KSLKMLHLIYTDITD--VTSLAGLTNLQELNLDINQITD--ISPLAA 182
Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
L NL+ L L TQV S L ++ L+ L +N +SD + LA LSSL + L
Sbjct: 183 LSNLQTLSLGYTQV--SDLTPIANLSKLTILNAENCKVSD--ISPLASLSSLTEVYLREN 238
Query: 359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
QI+D ++ L ++ L+ ++L IT+ Y
Sbjct: 239 QISD--VSPLANIPNLSIIELTDQIITNQPVYY 269
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 70/122 (57%), Gaps = 17/122 (13%)
Query: 274 GLTNLESL----NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG-----LRHLSGLT 324
G+T +E + NL + D + +++ L NL + T++G SG + L+GL
Sbjct: 85 GITTIEGMQYLTNLSELELTDNQITDVSPLANLTKI----TELGLSGNPLKDVSALAGLK 140
Query: 325 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 384
+L+ ++L +T I+D + LAGL++L+ LNLD QITD ++ L +L+ L L L ++
Sbjct: 141 SLKMLHLIYTDITD--VTSLAGLTNLQELNLDINQITD--ISPLAALSNLQTLSLGYTQV 196
Query: 385 TD 386
+D
Sbjct: 197 SD 198
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 66/262 (25%), Positives = 116/262 (44%), Gaps = 46/262 (17%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
+Q + Q +N+ + D + + L L +DVTD + D +
Sbjct: 31 VQAAVIEQPTPINEIFTDPVVADNVKTL---LEKADVTDE----------VTQTDLDSIT 77
Query: 93 QIS--DGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL-DLERCTRIHGGLV 149
Q+S G+ + G+ LT+LS +T + + L NL K+ +L +
Sbjct: 78 QLSAKSAGITTIEGMQYLTNLSELE---LTDNQITDVSPLANLTKITELGLSGNPLKDVS 134
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQ---- 204
L GL L+ L++ + + +D+ L+GLTNL+ L + +++TD S +A L LQ
Sbjct: 135 ALAGLKSLKMLHLIYTDI---TDVTSLAGLTNLQELNLDINQITDISPLAALSNLQTLSL 191
Query: 205 ---------------KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 249
KLT+LN E C V + + L++L SL + L Q+SD +
Sbjct: 192 GYTQVSDLTPIANLSKLTILNAENCKV--SDISPLASLSSLTEVYLRENQISD--VSPLA 247
Query: 250 KIGSLKVLNLGFNEITDECLVH 271
I +L ++ L IT++ + +
Sbjct: 248 NIPNLSIIELTDQIITNQPVYY 269
>gi|320165161|gb|EFW42060.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 641
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 73/255 (28%), Positives = 106/255 (41%), Gaps = 26/255 (10%)
Query: 107 NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCN 166
N TSL NN IT+ AF GL L L+L N
Sbjct: 63 NTTSLELN-NNQITSISAGAFTGLTALTYLNLNS-------------------------N 96
Query: 167 CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 226
I +GLT LK L + +++ D GL L L+L+ +T+ + ++
Sbjct: 97 SIRSISANAFTGLTALKHLPLGYNELADISATAFAGLTALNALHLQSNQITSISASAFAS 156
Query: 227 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 286
L +L YL L+ QL++ F+ + +L +LNL N+IT LT L L L
Sbjct: 157 LTTLTYLRLDSNQLTNFAANVFAGLSALALLNLESNQITSISANAFTDLTALTLLYLQRN 216
Query: 287 GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG 346
I TGL LK LEL + Q+ + SGL+ L + L I+ + G
Sbjct: 217 QITSIPTSAFTGLTALKDLELFNNQITAIAANTFSGLSALTQLYLFSNQITSIAANAFTG 276
Query: 347 LSSLKSLNLDARQIT 361
L +L +L LD + T
Sbjct: 277 LPALTALALDGNRFT 291
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 78/170 (45%)
Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 275
+T+ + + L +L YLNLN + F+ + +LK L LG+NE+ D GL
Sbjct: 74 ITSISAGAFTGLTALTYLNLNSNSIRSISANAFTGLTALKHLPLGYNELADISATAFAGL 133
Query: 276 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 335
T L +L+L S I L L L L Q+ + +GL+ L +NL
Sbjct: 134 TALNALHLQSNQITSISASAFASLTTLTYLRLDSNQLTNFAANVFAGLSALALLNLESNQ 193
Query: 336 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
I+ S L++L L L QIT +A T LT L L+LF +IT
Sbjct: 194 ITSISANAFTDLTALTLLYLQRNQITSIPTSAFTGLTALKDLELFNNQIT 243
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 94/215 (43%)
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
P + N SL+++ +++T GL LT LNL + + ++ + L +L +L
Sbjct: 57 PTAVPVNTTSLELNNNQITSISAGAFTGLTALTYLNLNSNSIRSISANAFTGLTALKHLP 116
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
L +L+D F+ + +L L+L N+IT LT L L LDS + +
Sbjct: 117 LGYNELADISATAFAGLTALNALHLQSNQITSISASAFASLTTLTYLRLDSNQLTNFAAN 176
Query: 295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 354
GL L L L Q+ S + LT L + L I+ GL++LK L
Sbjct: 177 VFAGLSALALLNLESNQITSISANAFTDLTALTLLYLQRNQITSIPTSAFTGLTALKDLE 236
Query: 355 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 389
L QIT + L+ LT L LF +IT A
Sbjct: 237 LFNNQITAIAANTFSGLSALTQLYLFSNQITSIAA 271
>gi|115741868|ref|XP_793918.2| PREDICTED: F-box/LRR-repeat protein 20-like [Strongylocentrotus
purpuratus]
Length = 431
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 85/258 (32%), Positives = 130/258 (50%), Gaps = 18/258 (6%)
Query: 64 LSGSDVTDSGLIHLKD-CSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITA 121
+S + +TD+ L L D C L L+ ++C QISD G+E L RG S++ L + ++IT
Sbjct: 146 VSCTAITDNALKSLSDGCHLLSHLNISWCDQISDNGIEALVRGCSHIKVLILKGCHSITD 205
Query: 122 QGMKAFAGLI-NLVKLDLERCTRIH-GGLVNL-KGLMKLESLNIKWCNCITDSDMKPLSG 178
+G+ NL L+++ C I G++ L KG L+SL + C +TD+ + S
Sbjct: 206 EGITHIGSHCKNLTTLNVQGCVLISDDGMIALAKGCRTLQSLCVSGCTHLTDNTLSAFSQ 265
Query: 179 L-TNLKSLQIS-CSKVTDSGI-AYLKGLQKLTLLNLEGCPVTAACLDSLSALGS--LFYL 233
+K+L++S CS+ TD+G A + L ++LE C + S ALG L L
Sbjct: 266 FCPKIKTLEVSGCSQFTDNGFQALARTCIDLERMDLEECVLITDTALSYLALGCPMLQKL 325
Query: 234 NLNRCQL-SDDGCEKFSKIG----SLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCG 287
L+ C+L +D+G G L+V+ L ITD L HL G L+ + L C
Sbjct: 326 TLSHCELITDEGIRHIGTSGCSTEHLQVIELDNCPLITDSSLEHLMGCQGLQRIELYDCQ 385
Query: 288 -IGDEGLVNL-TGLCNLK 303
I G+ L T L N+K
Sbjct: 386 LITRAGIRRLRTQLPNVK 403
>gi|440291484|gb|ELP84753.1| F-box/leucine rich repeat protein, putative [Entamoeba invadens
IP1]
Length = 691
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 85/336 (25%), Positives = 155/336 (46%), Gaps = 20/336 (5%)
Query: 70 TDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA- 128
T G I++ C++L+ L N Q+S+ L+ + + NL LS + ++ + AF
Sbjct: 271 TTDGFIYIVGCNSLRYLYLNES-QVSNYHLDVIARMENLIGLSLKGCASVNDYSLNAFKN 329
Query: 129 GLIN--LVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
G I+ L +L++E H GL + + L L+I CI + PL+ L NL+ L+
Sbjct: 330 GPISYSLEELNVEDTMITHIGLQTISRIKYLRVLDIS--RCIGIKIISPLNSLKNLEILR 387
Query: 187 -----ISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL-SALGSLFYLNLNRCQL 240
++ + DS K LQ+ E P+ L S +L YL L ++
Sbjct: 388 MTGIAVNAETIKDSFREPPKYLQQFLF---ESQPIDDPILTVFCSKFPTLEYLCLKGSKI 444
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGL 299
+ G + + ++VL++ + D+C + LT LE+L L+ C I EG+ L+ L
Sbjct: 445 TSFGIQDLVILSHIRVLDISNTAVDDKCFEFISKLTYLEALYLEKCMKISGEGINVLSTL 504
Query: 300 CNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSFTGISDGSL--RKLAGLSSLKSLNLD 356
+L+ L ++ +V L+ + L+ +E++ L+ G + L+ + LK L+L
Sbjct: 505 GSLRVLNMNGCAEVVIDSLKEMGELS-VETLRLNGCNKIGGKFVWKYLSEIEHLKRLDLS 563
Query: 357 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
+ D G+ + + L L L +++D L
Sbjct: 564 NTSVDDDGVEEMVNCKWLEVLYLIRTKVSDKAITSL 599
>gi|254932490|ref|ZP_05265849.1| internalin E [Listeria monocytogenes HPB2262]
gi|405748615|ref|YP_006672081.1| internalin E [Listeria monocytogenes ATCC 19117]
gi|417316569|ref|ZP_12103213.1| internalin E [Listeria monocytogenes J1-220]
gi|424822001|ref|ZP_18247014.1| Internalin E [Listeria monocytogenes str. Scott A]
gi|293584046|gb|EFF96078.1| internalin E [Listeria monocytogenes HPB2262]
gi|328476104|gb|EGF46813.1| internalin E [Listeria monocytogenes J1-220]
gi|332310681|gb|EGJ23776.1| Internalin E [Listeria monocytogenes str. Scott A]
gi|404217815|emb|CBY69179.1| internalin E (LPXTG motif) [Listeria monocytogenes ATCC 19117]
Length = 499
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 72/213 (33%), Positives = 106/213 (49%), Gaps = 38/213 (17%)
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
LTNL L+++ +++TD ++ L L K+T L L G P L +SAL L
Sbjct: 95 LTNLSELELTDNQITD--VSPLANLTKITELGLSGNP-----LKDVSALAGL-------- 139
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
SLK+L+L + +ITD + L GLTNL+ LNLD I D + L
Sbjct: 140 -------------KSLKMLHLIYTDITD--VTSLAGLTNLQELNLDINQITD--ISPLAA 182
Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
L NL+ L L TQV S L ++ L+ L +N +SD + LA LSSL + L
Sbjct: 183 LSNLQTLSLGYTQV--SDLTPIANLSKLTILNAENCKVSD--ISPLASLSSLTEVYLREN 238
Query: 359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
QI+D ++ L ++ L+ ++L IT+ Y
Sbjct: 239 QISD--VSPLANIPNLSIIELTDQIITNQPVYY 269
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 70/122 (57%), Gaps = 17/122 (13%)
Query: 274 GLTNLESL----NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG-----LRHLSGLT 324
G+T +E + NL + D + +++ L NL + T++G SG + L+GL
Sbjct: 85 GITTIEGMQYLTNLSELELTDNQITDVSPLANLTKI----TELGLSGNPLKDVSALAGLK 140
Query: 325 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 384
+L+ ++L +T I+D + LAGL++L+ LNLD QITD ++ L +L+ L L L ++
Sbjct: 141 SLKMLHLIYTDITD--VTSLAGLTNLQELNLDINQITD--ISPLAALSNLQTLSLGYTQV 196
Query: 385 TD 386
+D
Sbjct: 197 SD 198
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 66/262 (25%), Positives = 116/262 (44%), Gaps = 46/262 (17%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
+Q + Q +N+ + D + + L L +DVTD + D +
Sbjct: 31 VQAAVIEQPTPINEIFTDPVVADNVKTL---LEKADVTDE----------VTQTDLDSIT 77
Query: 93 QIS--DGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL-DLERCTRIHGGLV 149
Q+S G+ + G+ LT+LS +T + + L NL K+ +L +
Sbjct: 78 QLSAKSAGITTIEGMQYLTNLSELE---LTDNQITDVSPLANLTKITELGLSGNPLKDVS 134
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQ---- 204
L GL L+ L++ + + +D+ L+GLTNL+ L + +++TD S +A L LQ
Sbjct: 135 ALAGLKSLKMLHLIYTDI---TDVTSLAGLTNLQELNLDINQITDISPLAALSNLQTLSL 191
Query: 205 ---------------KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 249
KLT+LN E C V + + L++L SL + L Q+SD +
Sbjct: 192 GYTQVSDLTPIANLSKLTILNAENCKV--SDISPLASLSSLTEVYLRENQISD--VSPLA 247
Query: 250 KIGSLKVLNLGFNEITDECLVH 271
I +L ++ L IT++ + +
Sbjct: 248 NIPNLSIIELTDQIITNQPVYY 269
>gi|405754355|ref|YP_006677819.1| internalin E [Listeria monocytogenes SLCC2540]
gi|404223555|emb|CBY74917.1| internalin E (LPXTG motif) [Listeria monocytogenes SLCC2540]
Length = 499
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 72/213 (33%), Positives = 106/213 (49%), Gaps = 38/213 (17%)
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
LTNL L+++ +++TD ++ L L K+T L L G P L +SAL L
Sbjct: 95 LTNLSELELTDNQITD--VSPLANLTKITELGLSGNP-----LKDVSALAGL-------- 139
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
SLK+L+L + +ITD + L GLTNL+ LNLD I D + L
Sbjct: 140 -------------KSLKMLHLIYTDITD--VTSLAGLTNLQELNLDINQITD--ISPLAA 182
Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
L NL+ L L TQV S L ++ L+ L +N +SD + LA LSSL + L
Sbjct: 183 LSNLQTLSLGYTQV--SDLTPIANLSKLTILNAENCKVSD--ISPLASLSSLTEVYLREN 238
Query: 359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
QI+D ++ L ++ L+ ++L IT+ Y
Sbjct: 239 QISD--VSPLANIPNLSIIELTDQIITNQPVYY 269
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 70/122 (57%), Gaps = 17/122 (13%)
Query: 274 GLTNLESL----NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG-----LRHLSGLT 324
G+T +E + NL + D + +++ L NL + T++G SG + L+GL
Sbjct: 85 GITTIEGMQYLTNLSELELTDNQITDVSPLANLTKI----TELGLSGNPLKDVSALAGLK 140
Query: 325 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 384
+L+ ++L +T I+D + LAGL++L+ LNLD QITD ++ L +L+ L L L ++
Sbjct: 141 SLKMLHLIYTDITD--VTSLAGLTNLQELNLDINQITD--ISPLAALSNLQTLSLGYTQV 196
Query: 385 TD 386
+D
Sbjct: 197 SD 198
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 66/262 (25%), Positives = 116/262 (44%), Gaps = 46/262 (17%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
+Q + Q +N+ + D + + L L +DVTD + D +
Sbjct: 31 VQAAVIEQPTPINEIFTDPVVADNVKTL---LEKADVTDE----------VTQTDLDSIT 77
Query: 93 QIS--DGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL-DLERCTRIHGGLV 149
Q+S G+ + G+ LT+LS +T + + L NL K+ +L +
Sbjct: 78 QLSAKSAGITTIEGMQYLTNLSELE---LTDNQITDVSPLANLTKITELGLSGNPLKDVS 134
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQ---- 204
L GL L+ L++ + + +D+ L+GLTNL+ L + +++TD S +A L LQ
Sbjct: 135 ALAGLKSLKMLHLIYTDI---TDVTSLAGLTNLQELNLDINQITDISPLAALSNLQTLSL 191
Query: 205 ---------------KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 249
KLT+LN E C V + + L++L SL + L Q+SD +
Sbjct: 192 GYTQVSDLTPIANLSKLTILNAENCKV--SDISPLASLSSLTEVYLRENQISD--VSPLA 247
Query: 250 KIGSLKVLNLGFNEITDECLVH 271
I +L ++ L IT++ + +
Sbjct: 248 NIPNLSIIELTDQIITNQPVYY 269
>gi|83629917|gb|ABC26620.1| internalin E [Listeria monocytogenes]
gi|83629931|gb|ABC26627.1| internalin E [Listeria monocytogenes]
Length = 498
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 70/213 (32%), Positives = 106/213 (49%), Gaps = 38/213 (17%)
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
LTNL L+++ +++TD ++ L L K+T L L G P L +SAL L
Sbjct: 94 LTNLSELELTDNQITD--VSPLANLTKITELGLSGNP-----LKDVSALAGL-------- 138
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
SL ++L + +ITD + L+GLTNL+ LNLD I D + L
Sbjct: 139 -------------KSLTTMHLIYTDITD--VTPLEGLTNLQELNLDINQITD--ISPLAA 181
Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
L NL+ L L TQV S L ++ L+ L +N + +SD + LA LSSL + L
Sbjct: 182 LTNLQTLSLGYTQV--SDLTPIANLSKLTILNAENSKVSD--ISPLASLSSLTEVYLREN 237
Query: 359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
QI+D ++ L ++ L+ ++L IT+ Y
Sbjct: 238 QISD--VSPLANIPNLSIIELTDQIITNQPVYY 268
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 69/122 (56%), Gaps = 17/122 (13%)
Query: 274 GLTNLESL----NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG-----LRHLSGLT 324
G+T +E + NL + D + +++ L NL + T++G SG + L+GL
Sbjct: 84 GITTIEGMQYLTNLSELELTDNQITDVSPLANLTKI----TELGLSGNPLKDVSALAGLK 139
Query: 325 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 384
+L +++L +T I+D + L GL++L+ LNLD QITD ++ L +LT L L L ++
Sbjct: 140 SLTTMHLIYTDITD--VTPLEGLTNLQELNLDINQITD--ISPLAALTNLQTLSLGYTQV 195
Query: 385 TD 386
+D
Sbjct: 196 SD 197
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 64/258 (24%), Positives = 113/258 (43%), Gaps = 46/258 (17%)
Query: 37 CLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQIS- 95
+ Q +N+ + D + + L L +DVTD + D + Q+S
Sbjct: 34 VIEQPTPINEIFTDPVVADNVKTL---LEKADVTDE----------VTQTDLDSITQLSA 80
Query: 96 -DGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL-DLERCTRIHGGLVNLKG 153
G+ + G+ LT+LS +T + + L NL K+ +L + L G
Sbjct: 81 KSAGITTIEGMQYLTNLSELE---LTDNQITDVSPLANLTKITELGLSGNPLKDVSALAG 137
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQ-------- 204
L L ++++ + + +D+ PL GLTNL+ L + +++TD S +A L LQ
Sbjct: 138 LKSLTTMHLIYTDI---TDVTPLEGLTNLQELNLDINQITDISPLAALTNLQTLSLGYTQ 194
Query: 205 -----------KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS 253
KLT+LN E V + + L++L SL + L Q+SD + I +
Sbjct: 195 VSDLTPIANLSKLTILNAENSKV--SDISPLASLSSLTEVYLRENQISD--VSPLANIPN 250
Query: 254 LKVLNLGFNEITDECLVH 271
L ++ L IT++ + +
Sbjct: 251 LSIIELTDQIITNQPVYY 268
>gi|320165160|gb|EFW42059.1| hypothetical protein CAOG_07191 [Capsaspora owczarzaki ATCC 30864]
Length = 805
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 79/273 (28%), Positives = 120/273 (43%), Gaps = 10/273 (3%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL--INLVKLDLERCTRI--HGGL 148
QI+ L GL++LT L RNN I++ AF GL + + LD + T I H
Sbjct: 68 QITSISATALTGLTSLTQLLLPRNN-ISSIAANAFTGLSALTYISLDSNKLTSIPTHA-- 124
Query: 149 VNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTL 208
GL L+ L + N +T +GLT L SL + +++T L LT
Sbjct: 125 --FTGLTALQHL-LMQNNPVTSIPADAFAGLTALNSLVLFNNQITSISTNAFASLNALTT 181
Query: 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 268
L L+ + + D+ + L +L L ++ Q++ F+ + +L L+L N+IT
Sbjct: 182 LQLQQNLIDSIPADAFAGLTALTNLRMDNNQITTIPAGAFAGLTALNYLHLSNNQITSIS 241
Query: 269 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 328
GLT L L L S I T L L L+L Q+ S +GLT L+
Sbjct: 242 ATAFTGLTALSGLQLHSNYITSIPASAFTSLTALIQLKLGTNQITSIPSNAFTGLTALQD 301
Query: 329 INLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 361
+ L I+ S GL+ L L L++ +T
Sbjct: 302 LELHSNQITSLSTDAFQGLTGLVKLLLNSNPLT 334
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 95/217 (43%), Gaps = 11/217 (5%)
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
NL++ QI+ T L GL LT L L +++ ++ + L +L Y++L+ +L
Sbjct: 63 NLQNNQITSISATA-----LTGLTSLTQLLLPRNNISSIAANAFTGLSALTYISLDSNKL 117
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL---NLDSCGIGDEGLVNLT 297
+ F+ + +L+ L + N +T GLT L SL N I +L
Sbjct: 118 TSIPTHAFTGLTALQHLLMQNNPVTSIPADAFAGLTALNSLVLFNNQITSISTNAFASLN 177
Query: 298 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 357
L L+ + + + L+ LTNL N T I G+ AGL++L L+L
Sbjct: 178 ALTTLQLQQNLIDSIPADAFAGLTALTNLRMDNNQITTIPAGAF---AGLTALNYLHLSN 234
Query: 358 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRS 394
QIT A T LT L+ L L IT A+ S
Sbjct: 235 NQITSISATAFTGLTALSGLQLHSNYITSIPASAFTS 271
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 80/180 (44%)
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 266
T+LNL+ +T+ +L+ L SL L L R +S F+ + +L ++L N++T
Sbjct: 60 TVLNLQNNQITSISATALTGLTSLTQLLLPRNNISSIAANAFTGLSALTYISLDSNKLTS 119
Query: 267 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 326
GLT L+ L + + + GL L L L + Q+ S + L L
Sbjct: 120 IPTHAFTGLTALQHLLMQNNPVTSIPADAFAGLTALNSLVLFNNQITSISTNAFASLNAL 179
Query: 327 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
++ L I AGL++L +L +D QIT A LT L +L L +IT
Sbjct: 180 TTLQLQQNLIDSIPADAFAGLTALTNLRMDNNQITTIPAGAFAGLTALNYLHLSNNQITS 239
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 93/223 (41%), Gaps = 12/223 (5%)
Query: 85 SLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL--ERCT 142
SLD N I L L +L +NN +T+ AFAGL L L L + T
Sbjct: 111 SLDSNKLTSIPTHAFTGLTALQHL----LMQNNPVTSIPADAFAGLTALNSLVLFNNQIT 166
Query: 143 RIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKG 202
I L L +L ++ N I +GLT L +L++ +++T G
Sbjct: 167 SISTNA--FASLNALTTLQLQQ-NLIDSIPADAFAGLTALTNLRMDNNQITTIPAGAFAG 223
Query: 203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 262
L L L+L +T+ + + L +L L L+ ++ F+ + +L L LG N
Sbjct: 224 LTALNYLHLSNNQITSISATAFTGLTALSGLQLHSNYITSIPASAFTSLTALIQLKLGTN 283
Query: 263 EITDECLVHLKGLTNLESLNLDS---CGIGDEGLVNLTGLCNL 302
+IT GLT L+ L L S + + LTGL L
Sbjct: 284 QITSIPSNAFTGLTALQDLELHSNQITSLSTDAFQGLTGLVKL 326
>gi|226222899|ref|YP_002757006.1| internalin E [Listeria monocytogenes serotype 4b str. CLIP 80459]
gi|254853463|ref|ZP_05242811.1| internalin E [Listeria monocytogenes FSL R2-503]
gi|300764605|ref|ZP_07074597.1| internalin E [Listeria monocytogenes FSL N1-017]
gi|386731036|ref|YP_006204532.1| internalin E [Listeria monocytogenes 07PF0776]
gi|404279820|ref|YP_006680718.1| internalin E [Listeria monocytogenes SLCC2755]
gi|404285637|ref|YP_006692223.1| internalin E [Listeria monocytogenes serotype 7 str. SLCC2482]
gi|406703044|ref|YP_006753398.1| internalin E (LPXTG motif) [Listeria monocytogenes L312]
gi|225875361|emb|CAS04058.1| internalin E [Listeria monocytogenes serotype 4b str. CLIP 80459]
gi|258606834|gb|EEW19442.1| internalin E [Listeria monocytogenes FSL R2-503]
gi|300514712|gb|EFK41767.1| internalin E [Listeria monocytogenes FSL N1-017]
gi|384389794|gb|AFH78864.1| internalin E [Listeria monocytogenes 07PF0776]
gi|404226455|emb|CBY47860.1| internalin E (LPXTG motif) [Listeria monocytogenes SLCC2755]
gi|404244566|emb|CBY02791.1| internalin E (LPXTG motif) [Listeria monocytogenes serotype 7 str.
SLCC2482]
gi|406360074|emb|CBY66347.1| internalin E (LPXTG motif) [Listeria monocytogenes L312]
Length = 499
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 72/213 (33%), Positives = 106/213 (49%), Gaps = 38/213 (17%)
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
LTNL L+++ +++TD ++ L L K+T L L G P L +SAL L
Sbjct: 95 LTNLSELELTDNQITD--VSPLANLTKITELGLSGNP-----LKDVSALAGL-------- 139
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
SLK+L+L + +ITD + L GLTNL+ LNLD I D + L
Sbjct: 140 -------------KSLKMLHLIYTDITD--VTSLAGLTNLQELNLDINQITD--ISPLAA 182
Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
L NL+ L L TQV S L ++ L+ L +N +SD + LA LSSL + L
Sbjct: 183 LSNLQTLSLGYTQV--SDLTPIANLSKLTILNAENCKVSD--ISPLASLSSLTEVYLREN 238
Query: 359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
QI+D ++ L ++ L+ ++L IT+ Y
Sbjct: 239 QISD--VSPLANIPNLSIIELTDQIITNQPVYY 269
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 70/122 (57%), Gaps = 17/122 (13%)
Query: 274 GLTNLESL----NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG-----LRHLSGLT 324
G+T +E + NL + D + +++ L NL + T++G SG + L+GL
Sbjct: 85 GITTIEGMQYLTNLSELELTDNQITDVSPLANLTKI----TELGLSGNPLKDVSALAGLK 140
Query: 325 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 384
+L+ ++L +T I+D + LAGL++L+ LNLD QITD ++ L +L+ L L L ++
Sbjct: 141 SLKMLHLIYTDITD--VTSLAGLTNLQELNLDINQITD--ISPLAALSNLQTLSLGYTQV 196
Query: 385 TD 386
+D
Sbjct: 197 SD 198
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 66/262 (25%), Positives = 116/262 (44%), Gaps = 46/262 (17%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
+Q + Q +N+ + D + + L L +DVTD + D +
Sbjct: 31 VQAAVIEQPTPINEIFTDPVVADNVKTL---LEKADVTDE----------VTQTDLDSIT 77
Query: 93 QIS--DGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL-DLERCTRIHGGLV 149
Q+S G+ + G+ LT+LS +T + + L NL K+ +L +
Sbjct: 78 QLSAKSAGITTIEGMQYLTNLSELE---LTDNQITDVSPLANLTKITELGLSGNPLKDVS 134
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQ---- 204
L GL L+ L++ + + +D+ L+GLTNL+ L + +++TD S +A L LQ
Sbjct: 135 ALAGLKSLKMLHLIYTDI---TDVTSLAGLTNLQELNLDINQITDISPLAALSNLQTLSL 191
Query: 205 ---------------KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 249
KLT+LN E C V + + L++L SL + L Q+SD +
Sbjct: 192 GYTQVSDLTPIANLSKLTILNAENCKV--SDISPLASLSSLTEVYLRENQISD--VSPLA 247
Query: 250 KIGSLKVLNLGFNEITDECLVH 271
I +L ++ L IT++ + +
Sbjct: 248 NIPNLSIIELTDQIITNQPVYY 269
>gi|254992468|ref|ZP_05274658.1| internalin E [Listeria monocytogenes FSL J2-064]
Length = 499
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 72/213 (33%), Positives = 106/213 (49%), Gaps = 38/213 (17%)
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
LTNL L+++ +++TD ++ L L K+T L L G P L +SAL L
Sbjct: 95 LTNLSELELTDNQITD--VSPLANLTKITELGLSGNP-----LKDVSALAGL-------- 139
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
SLK+L+L + +ITD + L GLTNL+ LNLD I D + L
Sbjct: 140 -------------KSLKMLHLIYTDITD--VTSLAGLTNLQELNLDINQITD--ISPLAA 182
Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
L NL+ L L TQV S L ++ L+ L +N +SD + LA LSSL + L
Sbjct: 183 LSNLQTLSLGYTQV--SDLTPIANLSKLTILNAENCKVSD--ISPLASLSSLTEVYLREN 238
Query: 359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
QI+D ++ L ++ L+ ++L IT+ Y
Sbjct: 239 QISD--VSPLANIPNLSIIELTDQIITNQPVYY 269
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 70/122 (57%), Gaps = 17/122 (13%)
Query: 274 GLTNLESL----NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG-----LRHLSGLT 324
G+T +E + NL + D + +++ L NL + T++G SG + L+GL
Sbjct: 85 GITTIEGMQYLTNLSELELTDNQITDVSPLANLTKI----TELGLSGNPLKDVSALAGLK 140
Query: 325 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 384
+L+ ++L +T I+D + LAGL++L+ LNLD QITD ++ L +L+ L L L ++
Sbjct: 141 SLKMLHLIYTDITD--VTSLAGLTNLQELNLDINQITD--ISPLAALSNLQTLSLGYTQV 196
Query: 385 TD 386
+D
Sbjct: 197 SD 198
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 66/262 (25%), Positives = 116/262 (44%), Gaps = 46/262 (17%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
+Q + Q +N+ + D + + L L +DVTD + D +
Sbjct: 31 VQAAVIEQPTPINEIFTDPVVADNVKTL---LEKADVTDE----------VTQTDLDSIT 77
Query: 93 QIS--DGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL-DLERCTRIHGGLV 149
Q+S G+ + G+ LT+LS +T + + L NL K+ +L +
Sbjct: 78 QLSAKSAGITTIEGMQYLTNLSELE---LTDNQITDVSPLANLTKITELGLSGNPLKDVS 134
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQ---- 204
L GL L+ L++ + + +D+ L+GLTNL+ L + +++TD S +A L LQ
Sbjct: 135 ALAGLKSLKMLHLIYTDI---TDVTSLAGLTNLQELNLDINQITDISPLAALSNLQTLSL 191
Query: 205 ---------------KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 249
KLT+LN E C V + + L++L SL + L Q+SD +
Sbjct: 192 GYTQVSDLTPIANLSKLTILNAENCKV--SDISPLASLSSLTEVYLRENQISD--VSPLA 247
Query: 250 KIGSLKVLNLGFNEITDECLVH 271
I +L ++ L IT++ + +
Sbjct: 248 NIPNLSIIELTDQIITNQPVYY 269
>gi|83629923|gb|ABC26623.1| internalin E [Listeria monocytogenes]
Length = 498
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 72/213 (33%), Positives = 106/213 (49%), Gaps = 38/213 (17%)
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
LTNL L+++ +++TD ++ L L K+T L L G P L +SAL L
Sbjct: 94 LTNLSELELTDNQITD--VSPLANLTKITELGLSGNP-----LKDVSALAGL-------- 138
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
SLK+L+L + +ITD + L GLTNL+ LNLD I D + L
Sbjct: 139 -------------KSLKMLHLIYTDITD--VTSLAGLTNLQELNLDINQITD--ISPLAA 181
Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
L NL+ L L TQV S L ++ L+ L +N +SD + LA LSSL + L
Sbjct: 182 LSNLQTLSLGYTQV--SDLTPIANLSKLTILNAENCKVSD--ISPLASLSSLTEVYLREN 237
Query: 359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
QI+D ++ L ++ L+ ++L IT+ Y
Sbjct: 238 QISD--VSPLANIPNLSIIELTDQIITNQPVYY 268
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 66/262 (25%), Positives = 116/262 (44%), Gaps = 46/262 (17%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
+Q + Q +N+ + D + + L L +DVTD + D +
Sbjct: 30 VQAAVIEQPTPINEIFTDPVVADNVKTL---LEKADVTDE----------VTQTDLDSIT 76
Query: 93 QIS--DGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL-DLERCTRIHGGLV 149
Q+S G+ + G+ LT+LS +T + + L NL K+ +L +
Sbjct: 77 QLSAKSAGITTIEGMQYLTNLSELE---LTDNQITDVSPLANLTKITELGLSGNPLKDVS 133
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQ---- 204
L GL L+ L++ + + +D+ L+GLTNL+ L + +++TD S +A L LQ
Sbjct: 134 ALAGLKSLKMLHLIYTDI---TDVTSLAGLTNLQELNLDINQITDISPLAALSNLQTLSL 190
Query: 205 ---------------KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 249
KLT+LN E C V + + L++L SL + L Q+SD +
Sbjct: 191 GYTQVSDLTPIANLSKLTILNAENCKV--SDISPLASLSSLTEVYLRENQISD--VSPLA 246
Query: 250 KIGSLKVLNLGFNEITDECLVH 271
I +L ++ L IT++ + +
Sbjct: 247 NIPNLSIIELTDQIITNQPVYY 268
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 70/122 (57%), Gaps = 17/122 (13%)
Query: 274 GLTNLESL----NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG-----LRHLSGLT 324
G+T +E + NL + D + +++ L NL + T++G SG + L+GL
Sbjct: 84 GITTIEGMQYLTNLSELELTDNQITDVSPLANLTKI----TELGLSGNPLKDVSALAGLK 139
Query: 325 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 384
+L+ ++L +T I+D + LAGL++L+ LNLD QITD ++ L +L+ L L L ++
Sbjct: 140 SLKMLHLIYTDITD--VTSLAGLTNLQELNLDINQITD--ISPLAALSNLQTLSLGYTQV 195
Query: 385 TD 386
+D
Sbjct: 196 SD 197
>gi|334121440|ref|ZP_08495509.1| leucine-rich repeat-containing protein [Microcoleus vaginatus
FGP-2]
gi|333455058|gb|EGK83722.1| leucine-rich repeat-containing protein [Microcoleus vaginatus
FGP-2]
Length = 336
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 107/315 (33%), Positives = 152/315 (48%), Gaps = 40/315 (12%)
Query: 92 IQISDGGLEHLRG---LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-- 146
+QISD E R LSN T L+ + + +F L NL+ L R + +
Sbjct: 29 LQISDTP-ECDRANALLSNTTELNLKNLQITDISPLSSFTKLTNLI-LGSNRISDLAPLQ 86
Query: 147 GLVNLKGLM----------KLESLNIKWCNCITD----SDMKPLSGLTNLKSLQISCSKV 192
L NLK L+ L SL I + D SD+ PL+GLTNL +L + +K+
Sbjct: 87 SLTNLKTLIMDVNQISDISPLSSL-INLSQLVLDTNQISDISPLAGLTNLTALVLFDNKI 145
Query: 193 TDSGIAYLKGLQKLTLLNLEGCPVT-AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI 251
+D I L+ L L L L ++ A L +L+AL +L+ N ++SD + S +
Sbjct: 146 SD--ITPLQALTNLNALILYNNQISDLAPLTNLTALDTLYLYN---NKISD--ITRLSSL 198
Query: 252 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 311
+L L L N+I+D + L LTNL L L I D + LT L NL L L + Q
Sbjct: 199 KNLTTLFLFGNKISD--ITPLASLTNLNKLVLFQNQISD--ISPLTSLTNLIELNLGNNQ 254
Query: 312 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 371
+ S + L LTNL + L ISD S L L++L L+L QI+D +++L SL
Sbjct: 255 I--SDISPLKSLTNLTELYLFNNPISDTS--ALQALNNLFLLDLYNNQISD--ISSLQSL 308
Query: 372 TGLTHLDLFGARITD 386
LT LDL G I +
Sbjct: 309 QKLTTLDLRGNPIVN 323
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 77/219 (35%), Positives = 115/219 (52%), Gaps = 16/219 (7%)
Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
SD+ PL LTNLK+L + ++++D I+ L L L+ L L+ ++ + L+ L +L
Sbjct: 80 SDLAPLQSLTNLKTLIMDVNQISD--ISPLSSLINLSQLVLDTNQISD--ISPLAGLTNL 135
Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
L L ++SD + +L L L N+I+D L L LT L++L L + I D
Sbjct: 136 TALVLFDNKISD--ITPLQALTNLNALILYNNQISD--LAPLTNLTALDTLYLYNNKISD 191
Query: 291 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 350
+ L+ L NL L L ++ S + L+ LTNL + L ISD S L L++L
Sbjct: 192 --ITRLSSLKNLTTLFLFGNKI--SDITPLASLTNLNKLVLFQNQISDIS--PLTSLTNL 245
Query: 351 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 389
LNL QI+D ++ L SLT LT L LF I+D+ A
Sbjct: 246 IELNLGNNQISD--ISPLKSLTNLTELYLFNNPISDTSA 282
Score = 42.7 bits (99), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 93/202 (46%), Gaps = 41/202 (20%)
Query: 77 LKDCSNLQSLD--FNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134
L +NL +LD + + +ISD + L L NLT+L F N I+ + A L NL
Sbjct: 170 LAPLTNLTALDTLYLYNNKISD--ITRLSSLKNLTTL-FLFGNKIS--DITPLASLTNLN 224
Query: 135 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 194
KL + + N I SD+ PL+ LTNL L + ++++D
Sbjct: 225 KL-------------------------VLFQNQI--SDISPLTSLTNLIELNLGNNQISD 257
Query: 195 SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL 254
I+ LK L LT L L P++ +L AL +LF L+L Q+SD + L
Sbjct: 258 --ISPLKSLTNLTELYLFNNPISDTS--ALQALNNLFLLDLYNNQISD--ISSLQSLQKL 311
Query: 255 KVLNLGFNEITDE-CLVHLKGL 275
L+L N I ++ C V+ + +
Sbjct: 312 TTLDLRGNPIVNKICPVNPESI 333
>gi|119487242|ref|ZP_01620993.1| Rab family protein [Lyngbya sp. PCC 8106]
gi|119455797|gb|EAW36932.1| Rab family protein [Lyngbya sp. PCC 8106]
Length = 282
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 70/214 (32%), Positives = 102/214 (47%), Gaps = 38/214 (17%)
Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
SD++PLS T L L + + +TD +A L L +L +L + G V L LS++ L
Sbjct: 92 SDLRPLSSFTRLNRLILHKNNITD--LAPLTTLPELKILYVAGNQVED--LKPLSSMSGL 147
Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
L L ++SD S + +LK+L LGFN+++D L L LTNL L+L I D
Sbjct: 148 TELVLQTNKISD--ISPLSSLTNLKLLYLGFNQVSD--LKPLSSLTNLTELSLPGNKISD 203
Query: 291 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 350
+ LS LTN+ +NLS ISD LR L L+ L
Sbjct: 204 --------------------------ISPLSSLTNVTELNLSSNQISD--LRPLQPLTQL 235
Query: 351 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 384
LNL+ +++ + LT+L LT + LF +
Sbjct: 236 SELNLNGNNVSN--IIPLTTLPNLTEIYLFNNPV 267
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 90/174 (51%), Gaps = 15/174 (8%)
Query: 216 VTAACLDSLSALGSLFYLN---LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
+TA + L L S LN L++ ++D + + LK+L + N++ D L L
Sbjct: 86 LTATGISDLRPLSSFTRLNRLILHKNNITD--LAPLTTLPELKILYVAGNQVED--LKPL 141
Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 332
++ L L L + I D + L+ L NLK L L QV S L+ LS LTNL ++L
Sbjct: 142 SSMSGLTELVLQTNKISD--ISPLSSLTNLKLLYLGFNQV--SDLKPLSSLTNLTELSLP 197
Query: 333 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
ISD + L+ L+++ LNL + QI+D L L LT L+ L+L G +++
Sbjct: 198 GNKISD--ISPLSSLTNVTELNLSSNQISD--LRPLQPLTQLSELNLNGNNVSN 247
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 68/136 (50%), Gaps = 10/136 (7%)
Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 310
+G LNL I+D L L T L L L I D L LT L LK L ++
Sbjct: 78 LGFASSLNLTATGISD--LRPLSSFTRLNRLILHKNNITD--LAPLTTLPELKILYVAGN 133
Query: 311 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 370
QV L+ LS ++ L + L ISD + L+ L++LK L L Q++D L L+S
Sbjct: 134 QV--EDLKPLSSMSGLTELVLQTNKISD--ISPLSSLTNLKLLYLGFNQVSD--LKPLSS 187
Query: 371 LTGLTHLDLFGARITD 386
LT LT L L G +I+D
Sbjct: 188 LTNLTELSLPGNKISD 203
Score = 38.1 bits (87), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 82/178 (46%), Gaps = 24/178 (13%)
Query: 78 KDCSNLQS-LDFNFCIQISDGGLEHLRGLSNLTSLS---FRRNNAI------TAQGMKAF 127
++C + ++ L F + ++ G+ LR LS+ T L+ +NN T +K
Sbjct: 69 QNCQDAEAVLGFASSLNLTATGISDLRPLSSFTRLNRLILHKNNITDLAPLTTLPELKIL 128
Query: 128 AGLINLVKLDLERCTRIHG---------GLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
N V+ DL+ + + G + ++ L L +L + + SD+KPLS
Sbjct: 129 YVAGNQVE-DLKPLSSMSGLTELVLQTNKISDISPLSSLTNLKLLYLGFNQVSDLKPLSS 187
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
LTNL L + +K++D I+ L L +T LNL ++ L L L L LNLN
Sbjct: 188 LTNLTELSLPGNKISD--ISPLSSLTNVTELNLSSNQISD--LRPLQPLTQLSELNLN 241
>gi|83629901|gb|ABC26612.1| internalin E [Listeria monocytogenes]
gi|83629911|gb|ABC26617.1| internalin E [Listeria monocytogenes]
gi|83629913|gb|ABC26618.1| internalin E [Listeria monocytogenes]
gi|83629921|gb|ABC26622.1| internalin E [Listeria monocytogenes]
gi|83629929|gb|ABC26626.1| internalin E [Listeria monocytogenes]
gi|83629939|gb|ABC26631.1| internalin E [Listeria monocytogenes]
gi|83629961|gb|ABC26642.1| internalin E [Listeria monocytogenes]
Length = 498
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 72/213 (33%), Positives = 106/213 (49%), Gaps = 38/213 (17%)
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
LTNL L+++ +++TD ++ L L K+T L L G P L +SAL L
Sbjct: 94 LTNLSELELTDNQITD--VSPLANLTKITELGLSGNP-----LKDVSALAGL-------- 138
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
SLK+L+L + +ITD + L GLTNL+ LNLD I D + L
Sbjct: 139 -------------KSLKMLHLIYTDITD--VTSLAGLTNLQELNLDINQITD--ISPLAA 181
Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
L NL+ L L TQV S L ++ L+ L +N +SD + LA LSSL + L
Sbjct: 182 LSNLQTLSLGYTQV--SDLTPIANLSKLTILNAENCKVSD--ISPLASLSSLTEVYLREN 237
Query: 359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
QI+D ++ L ++ L+ ++L IT+ Y
Sbjct: 238 QISD--VSPLANIPNLSIIELTDQIITNQPVYY 268
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 70/122 (57%), Gaps = 17/122 (13%)
Query: 274 GLTNLESL----NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG-----LRHLSGLT 324
G+T +E + NL + D + +++ L NL + T++G SG + L+GL
Sbjct: 84 GITTIEGMQYLTNLSELELTDNQITDVSPLANLTKI----TELGLSGNPLKDVSALAGLK 139
Query: 325 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 384
+L+ ++L +T I+D + LAGL++L+ LNLD QITD ++ L +L+ L L L ++
Sbjct: 140 SLKMLHLIYTDITD--VTSLAGLTNLQELNLDINQITD--ISPLAALSNLQTLSLGYTQV 195
Query: 385 TD 386
+D
Sbjct: 196 SD 197
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 66/262 (25%), Positives = 116/262 (44%), Gaps = 46/262 (17%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
+Q + Q +N+ + D + + L L +DVTD + D +
Sbjct: 30 VQAAVIEQPTPINEIFTDPVVADNVKTL---LEKADVTDE----------VTQTDLDSIT 76
Query: 93 QIS--DGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL-DLERCTRIHGGLV 149
Q+S G+ + G+ LT+LS +T + + L NL K+ +L +
Sbjct: 77 QLSAKSAGITTIEGMQYLTNLSELE---LTDNQITDVSPLANLTKITELGLSGNPLKDVS 133
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQ---- 204
L GL L+ L++ + + +D+ L+GLTNL+ L + +++TD S +A L LQ
Sbjct: 134 ALAGLKSLKMLHLIYTDI---TDVTSLAGLTNLQELNLDINQITDISPLAALSNLQTLSL 190
Query: 205 ---------------KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 249
KLT+LN E C V + + L++L SL + L Q+SD +
Sbjct: 191 GYTQVSDLTPIANLSKLTILNAENCKV--SDISPLASLSSLTEVYLRENQISD--VSPLA 246
Query: 250 KIGSLKVLNLGFNEITDECLVH 271
I +L ++ L IT++ + +
Sbjct: 247 NIPNLSIIELTDQIITNQPVYY 268
>gi|356505803|ref|XP_003521679.1| PREDICTED: F-box/LRR-repeat protein 3-like [Glycine max]
Length = 641
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 105/352 (29%), Positives = 176/352 (50%), Gaps = 37/352 (10%)
Query: 69 VTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN--AITAQGMK 125
VTD GL + C L+ L +C++ISD G++ L L F + +T++ ++
Sbjct: 158 VTDIGLAKIAVGCGKLERLSLKWCLEISDLGIDLL--CKKCLDLKFLDVSYLKVTSESLR 215
Query: 126 AFAGLINLVKLDLERCTRIHG-GLVNL-KGLMKLESLNIKWCNCITDSDM-KPLSGLTNL 182
+ A L+ L + C+ + GL L KG L+++++ C+C++ S + +SG L
Sbjct: 216 SIASLLKLEVFVMVGCSLVDDVGLRFLEKGCPLLKAIDVSRCDCVSSSGLISVISGHGGL 275
Query: 183 KSLQ--ISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL-SALGSLFYLNLNRCQ 239
+ L S+++ + L+ L++L ++ ++G V+ L ++ + SL L L++C
Sbjct: 276 EQLDAGYCLSELSAPLVKCLENLKQLRIIRIDGVRVSDFILQTIGTNCKSLVELGLSKCV 335
Query: 240 -LSDDGCEKF-SKIGSLKVLNL---------GFNEITDECLVHLKGLTNLESLNLDSCGI 288
+++ G + S G LK+L+L + I D C +L L L+SC +
Sbjct: 336 GVTNKGIVQLVSGCGYLKILDLTCCRFISDAAISTIADSC-------PDLVCLKLESCDM 388
Query: 289 GDEGLVNLTGL-CN-LKCLELSDTQ-VGSSGLRHLSGLTNLESINLSF-TGISDGSLRKL 344
E + GL C+ LK L+L+D V LR+LS + L + L T ISD L +
Sbjct: 389 VTENCLYQLGLNCSLLKELDLTDCSGVDDIALRYLSRCSELVRLKLGLCTNISDIGLAHI 448
Query: 345 A-GLSSLKSLNL-DARQITDTGLAALTS-LTGLTHLDL-FGARITDSGAAYL 392
A + L+L +I D GLAALTS GLT+L+L + RITD G Y+
Sbjct: 449 ACNCPKMTELDLYRCVRIGDDGLAALTSGCKGLTNLNLSYCNRITDRGLEYI 500
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 82/294 (27%), Positives = 141/294 (47%), Gaps = 38/294 (12%)
Query: 79 DCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKL 136
+C +L L + C+ +++ G+ L G L L I+ + A +LV L
Sbjct: 322 NCKSLVELGLSKCVGVTNKGIVQLVSGCGYLKILDLTCCRFISDAAISTIADSCPDLVCL 381
Query: 137 DLERCTRIHGGLVNLKGL--MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVT 193
LE C + + GL L+ L++ C+ + D ++ LS + L L++ C+ ++
Sbjct: 382 KLESCDMVTENCLYQLGLNCSLLKELDLTDCSGVDDIALRYLSRCSELVRLKLGLCTNIS 441
Query: 194 DSGIAYLK-GLQKLTLLNLEGCPVTAACLDSLSALGS----LFYLNLNRC-QLSDDGCEK 247
D G+A++ K+T L+L C D L+AL S L LNL+ C +++D G E
Sbjct: 442 DIGLAHIACNCPKMTELDLYRCVRIGD--DGLAALTSGCKGLTNLNLSYCNRITDRGLEY 499
Query: 248 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 307
S +G E++D + L+GL+N+ S+ + + I + L +L +LK E
Sbjct: 500 ISHLG----------ELSD---LELRGLSNITSIGIKAVAISCKRLADL----DLKHCE- 541
Query: 308 SDTQVGSSGLRHLSGLT-NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
++ SG L+ + NL IN+S+ +SD L L G +LK L DA+ +
Sbjct: 542 ---KIDDSGFWALAFYSQNLRQINMSYCIVSDMVLCMLMG--NLKRLQ-DAKLV 589
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 89/186 (47%), Gaps = 13/186 (6%)
Query: 22 EVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGS-DVTDSGLIHLKD 79
+++L C+ L L LG ++D + IA + +DL + D GL L
Sbjct: 417 DIALRYLSRCSELVRLKLGLCTNISDIGLAHIACNCPKMTELDLYRCVRIGDDGLAALTS 476
Query: 80 -CSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKLD 137
C L +L+ ++C +I+D GLE++ L L+ L R + IT+ G+KA A L LD
Sbjct: 477 GCKGLTNLNLSYCNRITDRGLEYISHLGELSDLELRGLSNITSIGIKAVAISCKRLADLD 536
Query: 138 LERCTRI-HGGLVNLKGLMK-LESLNIKWCNCITDSDMKPLSGLTNLKSLQ----ISCSK 191
L+ C +I G L + L +N+ +C SDM + NLK LQ + SK
Sbjct: 537 LKHCEKIDDSGFWALAFYSQNLRQINMSYC---IVSDMVLCMLMGNLKRLQDAKLVCLSK 593
Query: 192 VTDSGI 197
V+ G+
Sbjct: 594 VSVKGL 599
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 67/250 (26%), Positives = 109/250 (43%), Gaps = 39/250 (15%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSD-VTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEH 101
++D + IA L+ + L D VT++ L L +CS L+ LD C + D L +
Sbjct: 363 ISDAAISTIADSCPDLVCLKLESCDMVTENCLYQLGLNCSLLKELDLTDCSGVDDIALRY 422
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRI-HGGLVNL-KGLMKLE 158
L S L L I+ G+ A + +LDL RC RI GL L G L
Sbjct: 423 LSRCSELVRLKLGLCTNISDIGLAHIACNCPKMTELDLYRCVRIGDDGLAALTSGCKGLT 482
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP-VT 217
+LN+ +CN ++TD G+ Y+ L +L+ L L G +T
Sbjct: 483 NLNLSYCN------------------------RITDRGLEYISHLGELSDLELRGLSNIT 518
Query: 218 AACLDSLS-ALGSLFYLNLNRCQLSDDGCEKFSKIG----SLKVLNLGFNEITDECLVHL 272
+ + +++ + L L+L C+ DD F + +L+ +N+ + ++D L L
Sbjct: 519 SIGIKAVAISCKRLADLDLKHCEKIDDS--GFWALAFYSQNLRQINMSYCIVSDMVLCML 576
Query: 273 KGLTNLESLN 282
G NL+ L
Sbjct: 577 MG--NLKRLQ 584
Score = 44.7 bits (104), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 75/292 (25%), Positives = 130/292 (44%), Gaps = 53/292 (18%)
Query: 82 NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC 141
N+++LD + C +I DG + S+ + +A +G++ +L L R
Sbjct: 64 NIETLDLSMCPRIEDGAV----------SVVLSQGSASWTRGLR---------RLVLSRA 104
Query: 142 TRI-HGGLVNL-KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIA 198
T + H GL L + LE++++ C D + LS L+ L + C VTD G+A
Sbjct: 105 TGLGHVGLEMLIRACPMLEAVDVSHCWGYGDREAAALSCAARLRELNMDKCLGVTDIGLA 164
Query: 199 YLK-GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF-SKIGSLKV 256
+ G KL L+L+ C ++SD G + K LK
Sbjct: 165 KIAVGCGKLERLSLKWCL-----------------------EISDLGIDLLCKKCLDLKF 201
Query: 257 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE-GLVNLTGLCN-LKCLELSDTQ-VG 313
L++ + ++T E L + L LE + C + D+ GL L C LK +++S V
Sbjct: 202 LDVSYLKVTSESLRSIASLLKLEVFVMVGCSLVDDVGLRFLEKGCPLLKAIDVSRCDCVS 261
Query: 314 SSGL-RHLSGLTNLESINLSF--TGISDGSLRKLAGLSSLKSLNLDARQITD 362
SSGL +SG LE ++ + + +S ++ L L L+ + +D +++D
Sbjct: 262 SSGLISVISGHGGLEQLDAGYCLSELSAPLVKCLENLKQLRIIRIDGVRVSD 313
>gi|83629897|gb|ABC26610.1| internalin E [Listeria monocytogenes]
gi|83629903|gb|ABC26613.1| internalin E [Listeria monocytogenes]
gi|83629933|gb|ABC26628.1| internalin E [Listeria monocytogenes]
gi|83629935|gb|ABC26629.1| internalin E [Listeria monocytogenes]
gi|83629937|gb|ABC26630.1| internalin E [Listeria monocytogenes]
gi|83629943|gb|ABC26633.1| internalin E [Listeria monocytogenes]
Length = 498
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 72/213 (33%), Positives = 106/213 (49%), Gaps = 38/213 (17%)
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
LTNL L+++ +++TD ++ L L K+T L L G P L +SAL L
Sbjct: 94 LTNLSELELTDNQITD--VSPLANLTKITELGLSGNP-----LKDVSALAGL-------- 138
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
SLK+L+L + +ITD + L GLTNL+ LNLD I D + L
Sbjct: 139 -------------KSLKMLHLIYTDITD--VTSLAGLTNLQELNLDINQITD--ISPLAA 181
Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
L NL+ L L TQV S L ++ L+ L +N +SD + LA LSSL + L
Sbjct: 182 LSNLQTLSLGYTQV--SDLTPIANLSKLTILNAENCKVSD--ISPLASLSSLTEVYLREN 237
Query: 359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
QI+D ++ L ++ L+ ++L IT+ Y
Sbjct: 238 QISD--VSPLANIPNLSIIELTDQIITNQPVYY 268
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 70/122 (57%), Gaps = 17/122 (13%)
Query: 274 GLTNLESL----NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG-----LRHLSGLT 324
G+T +E + NL + D + +++ L NL + T++G SG + L+GL
Sbjct: 84 GITTIEGMQYLTNLSELELTDNQITDVSPLANLTKI----TELGLSGNPLKDVSALAGLK 139
Query: 325 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 384
+L+ ++L +T I+D + LAGL++L+ LNLD QITD ++ L +L+ L L L ++
Sbjct: 140 SLKMLHLIYTDITD--VTSLAGLTNLQELNLDINQITD--ISPLAALSNLQTLSLGYTQV 195
Query: 385 TD 386
+D
Sbjct: 196 SD 197
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 66/262 (25%), Positives = 116/262 (44%), Gaps = 46/262 (17%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
+Q + Q +N+ + D + + L L +DVTD + D +
Sbjct: 30 VQAAVIEQPTPINEIFTDPVVADNVKTL---LEKADVTDE----------VTQTDLDSIT 76
Query: 93 QIS--DGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL-DLERCTRIHGGLV 149
Q+S G+ + G+ LT+LS +T + + L NL K+ +L +
Sbjct: 77 QLSAKSAGITTIEGMQYLTNLSELE---LTDNQITDVSPLANLTKITELGLSGNPLKDVS 133
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQ---- 204
L GL L+ L++ + + +D+ L+GLTNL+ L + +++TD S +A L LQ
Sbjct: 134 ALAGLKSLKMLHLIYTDI---TDVTSLAGLTNLQELNLDINQITDISPLAALSNLQTLSL 190
Query: 205 ---------------KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 249
KLT+LN E C V + + L++L SL + L Q+SD +
Sbjct: 191 GYTQVSDLTPIANLSKLTILNAENCKV--SDISPLASLSSLTEVYLRENQISD--VSPLA 246
Query: 250 KIGSLKVLNLGFNEITDECLVH 271
I +L ++ L IT++ + +
Sbjct: 247 NIPNLSIIELTDQIITNQPVYY 268
>gi|83629905|gb|ABC26614.1| internalin E [Listeria monocytogenes]
gi|83629927|gb|ABC26625.1| internalin E [Listeria monocytogenes]
Length = 498
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 72/213 (33%), Positives = 106/213 (49%), Gaps = 38/213 (17%)
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
LTNL L+++ +++TD ++ L L K+T L L G P L +SAL L
Sbjct: 94 LTNLSELELTDNQITD--VSPLANLTKITELGLSGNP-----LKDVSALAGL-------- 138
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
SLK+L+L + +ITD + L GLTNL+ LNLD I D + L
Sbjct: 139 -------------KSLKMLHLIYTDITD--VTSLAGLTNLQELNLDINQITD--ISPLAA 181
Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
L NL+ L L TQV S L ++ L+ L +N +SD + LA LSSL + L
Sbjct: 182 LSNLQTLSLGYTQV--SDLTPIANLSKLTILNAENCKVSD--ISPLASLSSLTEVYLREN 237
Query: 359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
QI+D ++ L ++ L+ ++L IT+ Y
Sbjct: 238 QISD--VSPLANIPNLSIIELTDQIITNQPVYY 268
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 70/122 (57%), Gaps = 17/122 (13%)
Query: 274 GLTNLESL----NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG-----LRHLSGLT 324
G+T +E + NL + D + +++ L NL + T++G SG + L+GL
Sbjct: 84 GITTIEGMQYLTNLSELELTDNQITDVSPLANLTKI----TELGLSGNPLKDVSALAGLK 139
Query: 325 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 384
+L+ ++L +T I+D + LAGL++L+ LNLD QITD ++ L +L+ L L L ++
Sbjct: 140 SLKMLHLIYTDITD--VTSLAGLTNLQELNLDINQITD--ISPLAALSNLQTLSLGYTQV 195
Query: 385 TD 386
+D
Sbjct: 196 SD 197
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 66/262 (25%), Positives = 116/262 (44%), Gaps = 46/262 (17%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
+Q + Q +N+ + D + + L L +DVTD + D +
Sbjct: 30 VQAAVIEQPTPINEIFTDPVVADNVKTL---LEKADVTDE----------VTQTDLDSIT 76
Query: 93 QIS--DGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL-DLERCTRIHGGLV 149
Q+S G+ + G+ LT+LS +T + + L NL K+ +L +
Sbjct: 77 QLSAKSAGITTIEGMQYLTNLSELE---LTDNQITDVSPLANLTKITELGLSGNPLKDVS 133
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQ---- 204
L GL L+ L++ + + +D+ L+GLTNL+ L + +++TD S +A L LQ
Sbjct: 134 ALAGLKSLKMLHLIYTDI---TDVTSLAGLTNLQELNLDINQITDISPLAALSNLQTLSL 190
Query: 205 ---------------KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 249
KLT+LN E C V + + L++L SL + L Q+SD +
Sbjct: 191 GYTQVSDLTPIANLSKLTILNAENCKV--SDISPLASLSSLTEVYLRENQISD--VSPLA 246
Query: 250 KIGSLKVLNLGFNEITDECLVH 271
I +L ++ L IT++ + +
Sbjct: 247 NIPNLSIIELTDQIITNQPVYY 268
>gi|343414400|emb|CCD21001.1| leucine-rich repeat protein [Trypanosoma vivax Y486]
Length = 511
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 117/354 (33%), Positives = 159/354 (44%), Gaps = 74/354 (20%)
Query: 86 LDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH 145
LD + C I+D + L L L L IT + + LI L KL+L CT I
Sbjct: 2 LDLSHCTGITD--VSPLTTLIELKELDLNDCTGIT--DVSPLSTLIRLEKLNLSDCTGIT 57
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQ 204
+ L L++LE LN+ C IT D+ PL+ L LK L ++ C+++TD ++ L L
Sbjct: 58 D-VSPLSTLIRLEKLNLSGCTGIT--DVSPLTTLIELKELDLNDCTRITD--VSPLSTLI 112
Query: 205 KLTLLNLEGC-------PVTA------ACL---------DSLSALGSLFYLNLNRC---- 238
+L L L GC P+T CL L+ L L L L+ C
Sbjct: 113 RLEKLCLSGCTGITDVSPLTTLIELKELCLSGCTGITDVSPLTTLIELKELGLSGCTGIT 172
Query: 239 ------------QLSDDGCEKFSKIGS------LKVLNL-GFNEITDECLVHLKGLTNLE 279
+L GC + + LKVL L G ITD + L L L+
Sbjct: 173 DVSPLTTLIELKELGLSGCTGITDVSPLTTLIRLKVLYLIGCTGITD--VSPLTTLIELK 230
Query: 280 SLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF----T 334
L+L C GI D + LT L LK L LS G +G+ +S LT L + + + T
Sbjct: 231 ELDLHDCTGITD--VSPLTTLIELKELGLS----GCTGITDVSPLTTLIRLEVLYLIGCT 284
Query: 335 GISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFG-ARITD 386
GI+D S L L LK L+L D ITD ++ LT+L L L L+G RITD
Sbjct: 285 GITDVS--PLTTLIELKELDLHDCTGITD--VSPLTTLIELKELALYGCTRITD 334
Score = 45.8 bits (107), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 67/218 (30%), Positives = 94/218 (43%), Gaps = 28/218 (12%)
Query: 82 NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC 141
L+ L C I+D + L L L L IT + LI L +L L C
Sbjct: 274 RLEVLYLIGCTGITD--VSPLTTLIELKELDLHDCTGIT--DVSPLTTLIELKELALYGC 329
Query: 142 TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ-ISCSKVTDSGIAYL 200
TRI + L L++LE L + C IT D+ PL+ L L+ L I C+ +TD ++ L
Sbjct: 330 TRITD-VSPLSALIRLEKLCLSGCTGIT--DVSPLTTLIRLEVLYLIGCTGITD--VSPL 384
Query: 201 KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN-- 258
L +L L L GC + +S L +L L +L GC + + L L
Sbjct: 385 TTLIELKELGLSGC----TGITDVSPLTTLIELK----ELGLSGCTGITDVSPLTTLIRL 436
Query: 259 -----LGFNEITDECLVHLKGLTNLESLNLDSC-GIGD 290
+G ITD + L L L+ L+L C GI D
Sbjct: 437 EVLYLIGCTGITD--VSPLTTLIELKELDLHDCTGISD 472
>gi|404449942|ref|ZP_11014929.1| putative internalin A [Indibacter alkaliphilus LW1]
gi|403764421|gb|EJZ25322.1| putative internalin A [Indibacter alkaliphilus LW1]
Length = 502
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 91/176 (51%), Gaps = 11/176 (6%)
Query: 168 ITDSDMKPLSGL---TNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
+ ++ + ++GL TNL+ L ++ + VTD S I L GL++L L NL+ AA LD
Sbjct: 76 VANTQVSSIAGLEKATNLEVLNLNFTNVTDMSPIQDLTGLKELNLWNLDLEGEGAAILDF 135
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
+ L L +L+L SD + + +LK LNL ++D L L G+T E LN
Sbjct: 136 VQNLNELEFLDLRETPTSD--ISRLAGKSNLKHLNLREANVSD--LSPLSGMTQFEYLNF 191
Query: 284 DSCG-IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
+ CG I D + L G+ NL L L + +VG + S T L N+ TGI+D
Sbjct: 192 NRCGNITD--ISPLDGMVNLYYLSLRNAEVGDEQFKQFSQYTKLVESNIRNTGITD 245
Score = 46.6 bits (109), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 68/130 (52%), Gaps = 10/130 (7%)
Query: 250 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV-NLTGLCNLKCLELS 308
++ +L LN+ +++ + L+ TNLE LNL+ + D + +LTGL L L
Sbjct: 67 RLANLTELNVANTQVS--SIAGLEKATNLEVLNLNFTNVTDMSPIQDLTGLKELNLWNLD 124
Query: 309 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 368
G++ L + L LE ++L T SD + +LAG S+LK LNL ++D L
Sbjct: 125 LEGEGAAILDFVQNLNELEFLDLRETPTSD--ISRLAGKSNLKHLNLREANVSD-----L 177
Query: 369 TSLTGLTHLD 378
+ L+G+T +
Sbjct: 178 SPLSGMTQFE 187
Score = 46.6 bits (109), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 62/249 (24%), Positives = 97/249 (38%), Gaps = 42/249 (16%)
Query: 43 GVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
G ND D+ + ++L ++++ + V S + L+ +NL+ L+ NF ++ L
Sbjct: 58 GSND---DITVGRLANLTELNVANTQV--SSIAGLEKATNLEVLNLNFTNVTDMSPIQDL 112
Query: 103 RGL---------------------SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC 141
GL NL L F + AG NL L+L
Sbjct: 113 TGLKELNLWNLDLEGEGAAILDFVQNLNELEFLDLRETPTSDISRLAGKSNLKHLNLREA 172
Query: 142 TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLK 201
L L G+ + E LN C IT D+ PL G+ NL L + ++V D
Sbjct: 173 NV--SDLSPLSGMTQFEYLNFNRCGNIT--DISPLDGMVNLYYLSLRNAEVGDEQFKQFS 228
Query: 202 GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 261
KL N+ +T ++ L ++F +LSD K S L+L
Sbjct: 229 QYTKLVESNIRNTGIT-----DITPLVAIFEAGAFTQELSDLYGNKIS-------LDLQN 276
Query: 262 NEITDECLV 270
N IT+ CL+
Sbjct: 277 NNITNPCLI 285
Score = 42.0 bits (97), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 6/122 (4%)
Query: 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 325
DE +V L LE IG + + L NL L +++TQV S + L TN
Sbjct: 37 DEVVVFEDEL--LEGFIKSDLNIGSNDDITVGRLANLTELNVANTQVSS--IAGLEKATN 92
Query: 326 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
LE +NL+FT ++D + + L+ LK LNL + G A L + L L+ R T
Sbjct: 93 LEVLNLNFTNVTD--MSPIQDLTGLKELNLWNLDLEGEGAAILDFVQNLNELEFLDLRET 150
Query: 386 DS 387
+
Sbjct: 151 PT 152
>gi|290991576|ref|XP_002678411.1| predicted protein [Naegleria gruberi]
gi|284092023|gb|EFC45667.1| predicted protein [Naegleria gruberi]
Length = 153
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 73/142 (51%)
Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 310
+ L LN+G+NEIT E + + L SL + + I D+G L+ + L L +S+
Sbjct: 1 MKQLTSLNIGYNEITVEGAKFISEMKQLTSLCIYNNEISDKGAKYLSEMKQLTSLNVSNN 60
Query: 311 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 370
+ G +H+S + L S+ + I D + ++ + L SLN+ +I+D G ++
Sbjct: 61 ETSDEGAKHISEMKQLTSLYIYDNQIGDKGAKYISEMKQLTSLNIGYNEISDEGAKYISE 120
Query: 371 LTGLTHLDLFGARITDSGAAYL 392
+ LT L ++ I+D GA YL
Sbjct: 121 MKQLTLLYIYNNEISDKGAKYL 142
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 77/145 (53%)
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
LN+ +++ +G + S++ L L + NEI+D+ +L + L SLN+ + DEG
Sbjct: 7 LNIGYNEITVEGAKFISEMKQLTSLCIYNNEISDKGAKYLSEMKQLTSLNVSNNETSDEG 66
Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
+++ + L L + D Q+G G +++S + L S+N+ + ISD + ++ + L
Sbjct: 67 AKHISEMKQLTSLYIYDNQIGDKGAKYISEMKQLTSLNIGYNEISDEGAKYISEMKQLTL 126
Query: 353 LNLDARQITDTGLAALTSLTGLTHL 377
L + +I+D G L+ + LT L
Sbjct: 127 LYIYNNEISDKGAKYLSEMKQLTSL 151
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 78/152 (51%), Gaps = 1/152 (0%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
+ +L SLNI + N IT K +S + L SL I ++++D G YL +++LT LN+
Sbjct: 1 MKQLTSLNIGY-NEITVEGAKFISEMKQLTSLCIYNNEISDKGAKYLSEMKQLTSLNVSN 59
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
+ +S + L L + Q+ D G + S++ L LN+G+NEI+DE ++
Sbjct: 60 NETSDEGAKHISEMKQLTSLYIYDNQIGDKGAKYISEMKQLTSLNIGYNEISDEGAKYIS 119
Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 305
+ L L + + I D+G L+ + L L
Sbjct: 120 EMKQLTLLYIYNNEISDKGAKYLSEMKQLTSL 151
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 76/151 (50%)
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
+ L SL I +++T G ++ +++LT L + ++ LS + L LN++
Sbjct: 1 MKQLTSLNIGYNEITVEGAKFISEMKQLTSLCIYNNEISDKGAKYLSEMKQLTSLNVSNN 60
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
+ SD+G + S++ L L + N+I D+ ++ + L SLN+ I DEG ++
Sbjct: 61 ETSDEGAKHISEMKQLTSLYIYDNQIGDKGAKYISEMKQLTSLNIGYNEISDEGAKYISE 120
Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESI 329
+ L L + + ++ G ++LS + L S+
Sbjct: 121 MKQLTLLYIYNNEISDKGAKYLSEMKQLTSL 151
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 77/154 (50%), Gaps = 9/154 (5%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI---QISDGGLEHLRGLSNLTSLSFRR 115
L S+++ +++T G + + L SL CI +ISD G ++L + LTSL+
Sbjct: 4 LTSLNIGYNEITVEGAKFISEMKQLTSL----CIYNNEISDKGAKYLSEMKQLTSLNV-S 58
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
NN + +G K + + L L + G + + +L SLNI + N I+D K
Sbjct: 59 NNETSDEGAKHISEMKQLTSLYIYDNQIGDKGAKYISEMKQLTSLNIGY-NEISDEGAKY 117
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL 209
+S + L L I ++++D G YL +++LT L
Sbjct: 118 ISEMKQLTLLYIYNNEISDKGAKYLSEMKQLTSL 151
>gi|428315480|ref|YP_007113362.1| leucine-rich repeat-containing protein [Oscillatoria nigro-viridis
PCC 7112]
gi|428239160|gb|AFZ04946.1| leucine-rich repeat-containing protein [Oscillatoria nigro-viridis
PCC 7112]
Length = 471
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 103/312 (33%), Positives = 151/312 (48%), Gaps = 41/312 (13%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE----RCTRIHGGL 148
+ISD + L+ L+NLT LS N +K L NL LDL + +I L
Sbjct: 147 RISD--ITPLKFLTNLTELSIWYNQVSNIYPLK---NLTNLSVLDLSLNPLKDIKILENL 201
Query: 149 VNLK--GLMKLESLNI---KWCNCITD--------SDMKPLSGLTNLKSLQISCSKVTDS 195
NL GL+ + NI K+ +T SD+ PL L L L IS ++++D
Sbjct: 202 RNLNTLGLVDNQVSNINHLKYLTSLTHLSLGTNQISDISPLKYLNQLTELGISRNQISD- 260
Query: 196 GIAYLKGLQKLTLLNLEGCPVT-AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL 254
I+ LK L KLT L L V+ L L+ L +L+ LNR ++SD K + +L
Sbjct: 261 -ISPLKHLSKLTELFLNNNKVSDITPLQFLTNLNTLW---LNRNRVSDISTLKL--LANL 314
Query: 255 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 314
L L N+I D + L+ LTNL+ ++L + I D + + NL L L++ Q+
Sbjct: 315 NTLYLINNQIYD--ISPLRYLTNLKQVDLTNNKIFD---LRMLDSINLTSLYLTNNQI-- 367
Query: 315 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 374
+ L + L+ ++L+ ISD S L L+ L L L QI+D ++ L SL L
Sbjct: 368 EDVSSLKFMKTLKVLSLADNKISDIS--PLKSLTKLTELYLSENQISD--VSPLKSLIKL 423
Query: 375 THLDLFGARITD 386
T LDL RI+D
Sbjct: 424 TRLDLANNRISD 435
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 68/216 (31%), Positives = 105/216 (48%), Gaps = 38/216 (17%)
Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
+D+ PLS LTNL L +S +K++D S+L +L
Sbjct: 105 TDISPLSSLTNLTKLSLSANKISDISSL--------------------------SSLTNL 138
Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
L L+R ++SD KF + +L L++ +N++++ + LK LTNL L+L + D
Sbjct: 139 TILQLDRNRISDITPLKF--LTNLTELSIWYNQVSN--IYPLKNLTNLSVLDLSLNPLKD 194
Query: 291 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 350
+ L L NL L L D QV S + HL LT+L ++L ISD S L L+ L
Sbjct: 195 IKI--LENLRNLNTLGLVDNQV--SNINHLKYLTSLTHLSLGTNQISDIS--PLKYLNQL 248
Query: 351 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
L + QI+D ++ L L+ LT L L +++D
Sbjct: 249 TELGISRNQISD--ISPLKHLSKLTELFLNNNKVSD 282
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 84/283 (29%), Positives = 129/283 (45%), Gaps = 34/283 (12%)
Query: 63 DLSGSDVTDSGLIHLKDC---SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAI 119
+L+ V D L LKD NL++L+ + + HL+ L++LT LS N
Sbjct: 178 NLTNLSVLDLSLNPLKDIKILENLRNLNTLGLVDNQVSNINHLKYLTSLTHLSLGTNQIS 237
Query: 120 TAQGMKAFAGL------------INLVKLDLERCTRI---HGGLVNLKGLMKLESLNIKW 164
+K L I+ +K L + T + + + ++ L L +LN W
Sbjct: 238 DISPLKYLNQLTELGISRNQISDISPLK-HLSKLTELFLNNNKVSDITPLQFLTNLNTLW 296
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
N SD+ L L NL +L + +++ D S + YL L+++ L N LDS
Sbjct: 297 LNRNRVSDISTLKLLANLNTLYLINNQIYDISPLRYLTNLKQVDLTN--NKIFDLRMLDS 354
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
++ L SL+ L Q+ D KF K +LKVL+L N+I+D + LK LT L L L
Sbjct: 355 IN-LTSLY---LTNNQIEDVSSLKFMK--TLKVLSLADNKISD--ISPLKSLTKLTELYL 406
Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 326
I D L L L L+L++ ++ S + L LTNL
Sbjct: 407 SENQISDVS--PLKSLIKLTRLDLANNRI--SDISMLKPLTNL 445
>gi|407859465|gb|EKG07051.1| hypothetical protein TCSYLVIO_001824 [Trypanosoma cruzi]
Length = 929
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 89/338 (26%), Positives = 154/338 (45%), Gaps = 13/338 (3%)
Query: 60 LSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAI 119
LS+ +S S L H C+ L+ LD ++ +G + L+ L+ LS I
Sbjct: 346 LSLCMSSSVSCTRFLRHRSLCA-LRDLDLSYTQVTEEGMYRDVSKLNKLSRLSLEGCRKI 404
Query: 120 TAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGL 179
+ ++ L L L+L + L L+ +L L+++WC IT +K L G
Sbjct: 405 --ESLQWLRALNQLRVLNLGYSSVTDDSLTALRFCPELAKLDLQWCGRITS--LKYLVGA 460
Query: 180 --TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
+L+ L ++ + VTD G+ LK L L++LEGC + L+ L L L +++ R
Sbjct: 461 LCDSLRELNLTETSVTDEGLVPLKDFAALELISLEGCGAVSD-LNVLCNLTRLREMDVGR 519
Query: 238 CQLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
++++ G S+ +L+V+ + +TD L L LE ++L C + +EG+ L
Sbjct: 520 TRVTNRGVVSLSQCQALRVMRMRQCYRLTDANF--LGALQQLEEVDLSDCPVTNEGIAGL 577
Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
G +L+ L L S + L GL +L ++L T + + LA L +L +
Sbjct: 578 FGARSLRKLRLQSCH-AVSDVNFLGGLEHLMLLDLHHTTVDEEGSVGLAQCPQLMTLIMH 636
Query: 357 ARQITD-TGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
+ + A L L LDL ++T ++LR
Sbjct: 637 SVLVHSLQQWNAALFLPRLKRLDLSTTKVTSDALSFLR 674
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 106/435 (24%), Positives = 174/435 (40%), Gaps = 95/435 (21%)
Query: 20 LTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLK 78
+T+ SL A R C L L L Q+ G ++ + SL ++L+ + VTD GL+ LK
Sbjct: 426 VTDDSLTALRFCPELAKLDL-QWCGRITSLKYLVGALCDSLRELNLTETSVTDEGLVPLK 484
Query: 79 DCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL 138
D + L+ + C +SD L L NLT L ++D+
Sbjct: 485 DFAALELISLEGCGAVSD-----LNVLCNLTRLR----------------------EMDV 517
Query: 139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIA 198
R + G+V+L L + ++ C +TD++ L L L+ + +S VT+ GIA
Sbjct: 518 GRTRVTNRGVVSLSQCQALRVMRMRQCYRLTDANF--LGALQQLEEVDLSDCPVTNEGIA 575
Query: 199 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK-------- 250
L G + L L L+ C + ++ L L L L+L+ + ++G ++
Sbjct: 576 GLFGARSLRKLRLQSCHAVSD-VNFLGGLEHLMLLDLHHTTVDEEGSVGLAQCPQLMTLI 634
Query: 251 -----------------IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC------- 286
+ LK L+L ++T + L L+ LE+L+L C
Sbjct: 635 MHSVLVHSLQQWNAALFLPRLKRLDLSTTKVTSDALSFLRMCPVLETLSLRGCKNITHLD 694
Query: 287 --------GIGDEGLVNL--------------------TGLCNLKCLELSDTQVGSSGLR 318
G G +V G ++ + ++D + S+
Sbjct: 695 FLILQPSSGAGVCAIVPRDVEPHDTVGDIIAGKEKNSDDGPSPIETMTINDGVIKSAAAA 754
Query: 319 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHL 377
+ L + LS TG++D LR L L+ L L + TD +A L L+ L L
Sbjct: 755 AVVSRHRLRELTLSDTGVTDEGLRALQYCPGLERLRLAHCKNFTD--VAVLRWLSQLKEL 812
Query: 378 DLFGARITDSGAAYL 392
DL +T SG A L
Sbjct: 813 DLSATGVTGSGLAKL 827
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 83/343 (24%), Positives = 137/343 (39%), Gaps = 57/343 (16%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+ L +D+ + VT+ G++ L C L+ + C +++D L L L + +
Sbjct: 510 TRLREMDVGRTRVTNRGVVSLSQCQALRVMRMRQCYRLTDANF--LGALQQLEEVDLS-D 566
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIH-----GGLVNLK---------------GLMK 156
+T +G+ G +L KL L+ C + GGL +L GL +
Sbjct: 567 CPVTNEGIAGLFGARSLRKLRLQSCHAVSDVNFLGGLEHLMLLDLHHTTVDEEGSVGLAQ 626
Query: 157 LESLNIKWCNCITDSDMKPLSG---LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
L + + ++ + L LK L +S +KVT +++L+ L L+L G
Sbjct: 627 CPQLMTLIMHSVLVHSLQQWNAALFLPRLKRLDLSTTKVTSDALSFLRMCPVLETLSLRG 686
Query: 214 CPVTAACLDSL-------SALGSLFYLNLNRCQLSDD---GCEKFSKIGSLKVLNLGFNE 263
C LD L + + ++ ++ D G EK S G + + N+
Sbjct: 687 C-KNITHLDFLILQPSSGAGVCAIVPRDVEPHDTVGDIIAGKEKNSDDGPSPIETMTIND 745
Query: 264 --ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL---TGLCNLK---CLELSDTQVGSS 315
I + L L L G+ DEGL L GL L+ C +D V
Sbjct: 746 GVIKSAAAAAVVSRHRLRELTLSDTGVTDEGLRALQYCPGLERLRLAHCKNFTDVAV--- 802
Query: 316 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
L L+ L+ ++LS TG++ L KL+ S NL AR
Sbjct: 803 ----LRWLSQLKELDLSATGVTGSGLAKLS-----PSGNLPAR 836
>gi|343421641|emb|CCD18751.1| hypothetical protein, conserved [Trypanosoma vivax Y486]
Length = 518
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 106/376 (28%), Positives = 161/376 (42%), Gaps = 62/376 (16%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISD----------------GGLEHLRGLSNLTSLS 112
VTD L L +L L+ C +++D G +RGL+ L SL
Sbjct: 144 VTDDFLCSLTTSGSLTHLNLTECSRLTDVEPLASIKTLEQVNLSGSFPGVRGLAALGSLP 203
Query: 113 FRR-----NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI---KW 164
R + A+T +K + LV+L L C R L ++ L+K+ SL +
Sbjct: 204 RLRELNLKHTAVTDDCLKTLSASKTLVRLFLVDCRR----LTDVTPLVKISSLQVVDLSD 259
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
C+ IT M L+ L +L ++ + +TD + L Q L L+++ C + L +
Sbjct: 260 CSGITKG-MGGFGTLSGLYALSLTGTALTDEQLQELCASQSLESLSIKRCKL----LTDV 314
Query: 225 SALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL--------- 272
LG +L L+++ C G FS + L+ L + F +T+ECL +
Sbjct: 315 GVLGFVTTLRELDMSECDGVARGFCSFSALRELRSLYMTFTCVTNECLCEISKCPQLVKL 374
Query: 273 -----KGLTN---------LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 318
K LT+ LE LN++ C ++GL L GL L+ L +S T VG+ LR
Sbjct: 375 SVAGCKKLTDISCLSQVHTLEDLNVNMCEHIEDGLGVLGGLEELRTLRMSFTAVGNDELR 434
Query: 319 HLSGLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 377
+ LE L I+D S LA SL LNLD Q TG+ L L L +
Sbjct: 435 LVCKSKTLERSELEGCERITDVS--ALAVAQSLMFLNLDRCQKVVTGVGELGKLPALRVV 492
Query: 378 DLFGARITDSGAAYLR 393
L G +T+ L+
Sbjct: 493 SLQGVSVTEDDMKSLK 508
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 78/284 (27%), Positives = 131/284 (46%), Gaps = 33/284 (11%)
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW 164
+S+L ++ +AI G F + L L L R L +L L LN+
Sbjct: 108 MSSLEEVALHNASAIVHIG--KFGRMPCLRVLTLHRVGVTDDFLCSLTTSGSLTHLNLTE 165
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
C+ +TD ++PL+ + L+ + +S S G+A L L +L LNL+ VT CL +L
Sbjct: 166 CSRLTD--VEPLASIKTLEQVNLSGSFPGVRGLAALGSLPRLRELNLKHTAVTDDCLKTL 223
Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL-----------GF------------ 261
SA +L L L C+ D KI SL+V++L GF
Sbjct: 224 SASKTLVRLFLVDCRRLTD-VTPLVKISSLQVVDLSDCSGITKGMGGFGTLSGLYALSLT 282
Query: 262 -NEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 319
+TDE L L +LESL++ C + D G++ + L+ L++S+ + G
Sbjct: 283 GTALTDEQLQELCASQSLESLSIKRCKLLTDVGVLGF--VTTLRELDMSECDGVARGFCS 340
Query: 320 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITD 362
S L L S+ ++FT +++ L +++ L L++ +++TD
Sbjct: 341 FSALRELRSLYMTFTCVTNECLCEISKCPQLVKLSVAGCKKLTD 384
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 63/238 (26%), Positives = 111/238 (46%), Gaps = 24/238 (10%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGG-------LEHL------- 102
S L ++ L+G+ +TD L L +L+SL C ++D G L L
Sbjct: 274 SGLYALSLTGTALTDEQLQELCASQSLESLSIKRCKLLTDVGVLGFVTTLRELDMSECDG 333
Query: 103 --RGLSNLTSLSFRRN-----NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLM 155
RG + ++L R+ +T + + + LVKL + C ++ + L +
Sbjct: 334 VARGFCSFSALRELRSLYMTFTCVTNECLCEISKCPQLVKLSVAGCKKL-TDISCLSQVH 392
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215
LE LN+ C I D + L GL L++L++S + V + + + + L LEGC
Sbjct: 393 TLEDLNVNMCEHIEDG-LGVLGGLEELRTLRMSFTAVGNDELRLVCKSKTLERSELEGCE 451
Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
+ +L+ SL +LNL+RCQ G + K+ +L+V++L +T++ + LK
Sbjct: 452 RITD-VSALAVAQSLMFLNLDRCQKVVTGVGELGKLPALRVVSLQGVSVTEDDMKSLK 508
>gi|290981165|ref|XP_002673301.1| predicted protein [Naegleria gruberi]
gi|284086884|gb|EFC40557.1| predicted protein [Naegleria gruberi]
Length = 357
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 104/202 (51%), Gaps = 9/202 (4%)
Query: 183 KSLQISCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
K LQ + K+ +G Y+ L++LT LN+ + +S L L +L++ ++S
Sbjct: 141 KYLQFT-HKIGKTGAKYIGDQLRQLTYLNIGNNDIGDEGAKHISQLKLLTFLDVYENRIS 199
Query: 242 DDGCEKFS-KIGSLKVLNLGFNEI-TDEC--LVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
+ G FS ++ L LN+ N I +D+ L+ +K LT+L N+ + +EG ++
Sbjct: 200 NVGLVNFSNELQHLTHLNINSNYIFSDDAKLLIEMKQLTHL---NIGDNSLQEEGAKWIS 256
Query: 298 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 357
+ LK L +S + S G++++ LTNL ++N+S I D + KL L L LN+
Sbjct: 257 EMKQLKYLNISRNLIRSEGMKYICELTNLTTLNVSQNSIKDKGIEKLPNLEKLTELNISY 316
Query: 358 RQITDTGLAALTSLTGLTHLDL 379
I++ G + L LT LD+
Sbjct: 317 NNISNKGAKLINELKQLTFLDM 338
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 81/176 (46%), Gaps = 2/176 (1%)
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG-LMKLESLNIKWCNCITDSDMK 174
NN I +G K + L L LD+ + GLVN L L LNI N I D K
Sbjct: 171 NNDIGDEGAKHISQLKLLTFLDVYENRISNVGLVNFSNELQHLTHLNIN-SNYIFSDDAK 229
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
L + L L I + + + G ++ +++L LN+ + + + + L +L LN
Sbjct: 230 LLIEMKQLTHLNIGDNSLQEEGAKWISEMKQLKYLNISRNLIRSEGMKYICELTNLTTLN 289
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
+++ + D G EK + L LN+ +N I+++ + L L L++D GD
Sbjct: 290 VSQNSIKDKGIEKLPNLEKLTELNISYNNISNKGAKLINELKQLTFLDMDCNEGGD 345
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 67/144 (46%), Gaps = 1/144 (0%)
Query: 250 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG-LCNLKCLELS 308
++ L LN+G N+I DE H+ L L L++ I + GLVN + L +L L ++
Sbjct: 160 QLRQLTYLNIGNNDIGDEGAKHISQLKLLTFLDVYENRISNVGLVNFSNELQHLTHLNIN 219
Query: 309 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 368
+ S + L + L +N+ + + + ++ + LK LN+ I G+ +
Sbjct: 220 SNYIFSDDAKLLIEMKQLTHLNIGDNSLQEEGAKWISEMKQLKYLNISRNLIRSEGMKYI 279
Query: 369 TSLTGLTHLDLFGARITDSGAAYL 392
LT LT L++ I D G L
Sbjct: 280 CELTNLTTLNVSQNSIKDKGIEKL 303
Score = 38.5 bits (88), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 80/192 (41%), Gaps = 11/192 (5%)
Query: 211 LEGCPVTAACLDSLSALGSL------FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 264
LE V +C + G F++N+N S + CE+FS L L++ +
Sbjct: 65 LERLKVELSCGNDKKVNGQFLQNVETFHMNINVFVKSFE-CERFSLFKQLTKLDIAYELE 123
Query: 265 TDECLVHLKGLTNLESLNL--DSCGIGDEGLVNL-TGLCNLKCLELSDTQVGSSGLRHLS 321
+ L HL+ E + IG G + L L L + + +G G +H+S
Sbjct: 124 DPDYLDHLREQDYEEYQKYLQFTHKIGKTGAKYIGDQLRQLTYLNIGNNDIGDEGAKHIS 183
Query: 322 GLTNLESINLSFTGISDGSLRKLAG-LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 380
L L +++ IS+ L + L L LN+++ I L + LTHL++
Sbjct: 184 QLKLLTFLDVYENRISNVGLVNFSNELQHLTHLNINSNYIFSDDAKLLIEMKQLTHLNIG 243
Query: 381 GARITDSGAAYL 392
+ + GA ++
Sbjct: 244 DNSLQEEGAKWI 255
>gi|255522174|ref|ZP_05389411.1| internalin E [Listeria monocytogenes FSL J1-175]
Length = 499
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 72/213 (33%), Positives = 106/213 (49%), Gaps = 38/213 (17%)
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
LTNL L+++ +++TD ++ L L K+T L L G P L +SAL L
Sbjct: 95 LTNLSELELTDNQITD--VSPLANLTKITELGLSGNP-----LKDVSALAGL-------- 139
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
SLK+L+L + +ITD + L GLTNL+ LNLD I D + L
Sbjct: 140 -------------KSLKMLHLIYTDITD--VTSLAGLTNLQELNLDINQITD--ISPLAA 182
Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
L NL+ L L TQV S L ++ L+ L +N +SD + LA LSSL + L
Sbjct: 183 LSNLQTLSLGYTQV--SDLTPIANLSKLTILNAENCKVSD--ISTLASLSSLTEVYLREN 238
Query: 359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
QI+D ++ L ++ L+ ++L IT+ Y
Sbjct: 239 QISD--VSPLANIPNLSIIELTDQIITNQPVYY 269
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 66/262 (25%), Positives = 117/262 (44%), Gaps = 46/262 (17%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
+Q + Q +N+ + D + + L L +DVTD + D +
Sbjct: 31 VQAAVIEQPTPINEIFTDPVVADNVKTL---LEKADVTDE----------VTQTDLDSIT 77
Query: 93 QIS--DGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL-DLERCTRIHGGLV 149
Q+S G+ + G+ LT+LS +T + + L NL K+ +L +
Sbjct: 78 QLSAKSAGITTIEGMQYLTNLSELE---LTDNQITDVSPLANLTKITELGLSGNPLKDVS 134
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQ---- 204
L GL L+ L++ + + +D+ L+GLTNL+ L + +++TD S +A L LQ
Sbjct: 135 ALAGLKSLKMLHLIYTDI---TDVTSLAGLTNLQELNLDINQITDISPLAALSNLQTLSL 191
Query: 205 ---------------KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 249
KLT+LN E C V + + +L++L SL + L Q+SD +
Sbjct: 192 GYTQVSDLTPIANLSKLTILNAENCKV--SDISTLASLSSLTEVYLRENQISD--VSPLA 247
Query: 250 KIGSLKVLNLGFNEITDECLVH 271
I +L ++ L IT++ + +
Sbjct: 248 NIPNLSIIELTDQIITNQPVYY 269
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 70/122 (57%), Gaps = 17/122 (13%)
Query: 274 GLTNLESL----NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG-----LRHLSGLT 324
G+T +E + NL + D + +++ L NL + T++G SG + L+GL
Sbjct: 85 GITTIEGMQYLTNLSELELTDNQITDVSPLANLTKI----TELGLSGNPLKDVSALAGLK 140
Query: 325 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 384
+L+ ++L +T I+D + LAGL++L+ LNLD QITD ++ L +L+ L L L ++
Sbjct: 141 SLKMLHLIYTDITD--VTSLAGLTNLQELNLDINQITD--ISPLAALSNLQTLSLGYTQV 196
Query: 385 TD 386
+D
Sbjct: 197 SD 198
>gi|72385483|ref|XP_846409.1| leucine-rich repeat protein (LRRP) [Trypanosoma brucei TREU927]
gi|9366582|emb|CAB95344.1| leucine-rich repeat protein (LRRP), putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
Length = 1449
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 104/382 (27%), Positives = 170/382 (44%), Gaps = 42/382 (10%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC 91
AL +L L G+N W + Q L LS + +TD + H C NL +LD +FC
Sbjct: 611 ALNELNLNNCFGINAGWEAIEKLQ--QLHVAILSNTHITDRDISHFSKCKNLVTLDLSFC 668
Query: 92 IQISD-------GGLEHL---------RGLSNLTSLSFRRNNAITAQGMKAFAGLI---- 131
++ D LE L +GLS L L R + +G++ +I
Sbjct: 669 NKLLDVTTLSNITTLEELNLDSCSNIRKGLSVLGELP--RLCVLNIKGVELEDSVIGSLG 726
Query: 132 ---NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
+ V+L LE C + G + L L+ LE LN+ +C+ +T S M L L L+ L +
Sbjct: 727 NGNSFVRLSLEHC-KGFGDVTPLSNLVTLEELNLHYCDKVT-SGMGTLGRLLQLRVLDLG 784
Query: 189 CSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 247
++V ++ + + L LLNL C + + ++++L +L LN++ C G
Sbjct: 785 RTQVDNNSLENICTSSIPLVLLNLSHCKKITS-ISAIASLTALEELNIDNCCNVTSGWNV 843
Query: 248 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE- 306
F + L+V L I DE + ++ +L +LNL C + + ++T L + LE
Sbjct: 844 FGTLHQLRVATLSNTRINDENVRYVSECKSLNTLNLAFC----KDITDVTALSKITMLEE 899
Query: 307 --LSDTQVGSSGLRHLSGLTNLESINLS--FTGISDGSLRKLAGLS-SLKSLNLDARQIT 361
L G+ L L +++ + G SD + G S SL LNL+ R +
Sbjct: 900 LNLDCCHNIRKGIETLGKLPKARILSMKECYMGDSDAQQCSILGNSKSLVKLNLE-RSMG 958
Query: 362 DTGLAALTSLTGLTHLDLFGAR 383
+ AL+++ L L L AR
Sbjct: 959 FISVKALSNIATLEELVLDHAR 980
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 99/372 (26%), Positives = 161/372 (43%), Gaps = 58/372 (15%)
Query: 65 SGSDVTDSGLIHLKDCSNLQSLDFNFCIQISD-------GGLEHL---------RGLSNL 108
SG V D+ L L DC +L+ L+ ++CIQ++D +E L RG+ +
Sbjct: 358 SGVPVEDNCLKDLCDCGSLERLNLSYCIQLTDINPLSSATAIEELNLNGCRRITRGIGVV 417
Query: 109 TSLS-FRRNNAITAQGMKAFAGLI----NLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 163
+L R + Q + G + + V+L LE C G + L ++ LE LNI+
Sbjct: 418 WALPKLRVLHMKDVQLEDSVIGSLGNGNSFVRLSLENCAGF-GDMTLLSSIVTLEELNIQ 476
Query: 164 WCNCITDS----DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
C I P + N+K + IS T GI K L +LTL ++ G
Sbjct: 477 KCADIISGVGCLGTLPYLRVLNVKEVHISSLDFT--GIGASKSLLQLTLESITG----LI 530
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL---------- 269
+++L+ + +L L+L+ C D G + LK+L+L +E L
Sbjct: 531 DVEALANILTLEKLSLHGCTGIDAGIGCLGNLPQLKMLDLSGTNTDNESLRSLCLSQTMV 590
Query: 270 -------------VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 316
H+ L L LNL++C + G + L L LS+T +
Sbjct: 591 SLNLSHCWKMTNVSHISSLEALNELNLNNCFGINAGWEAIEKLQQLHVAILSNTHITDRD 650
Query: 317 LRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 375
+ H S NL +++LSF + D + L+ +++L+ LNLD+ GL+ L L L
Sbjct: 651 ISHFSKCKNLVTLDLSFCNKLLD--VTTLSNITTLEELNLDSCSNIRKGLSVLGELPRLC 708
Query: 376 HLDLFGARITDS 387
L++ G + DS
Sbjct: 709 VLNIKGVELEDS 720
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 106/406 (26%), Positives = 175/406 (43%), Gaps = 54/406 (13%)
Query: 20 LTEVSLEAFRD--CALQDLCLGQYPGVNDKWMDVIA------SQGSSLLSVDLSGSD-VT 70
L E+ L+ R+ C CL + +N K+ D+ S+ SL ++LS VT
Sbjct: 971 LEELVLDHAREVCCIPSFSCLPRLRVLNLKYTDINGDVTKNISESKSLRLLNLSHCKWVT 1030
Query: 71 DSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL 130
D + L S L+ L+ + C I G E L L L ++ + ITA+ + +
Sbjct: 1031 DISV--LSSLSTLEELNVSSCYGIKKG-WESLGKLP-LLRVAILSDTNITAKDIACLSSC 1086
Query: 131 INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD----MKPLSGLTNLKSLQ 186
LVKL C + V + + LE L +K SD + L L L+ L
Sbjct: 1087 KTLVKLQFSWCEELSDVTV-VYEIQSLEELIVK-----KYSDGLKGLNALGTLPRLRFLH 1140
Query: 187 ISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD--SLSALGSLFYLNLNRCQLSDDG 244
+ + +D + + + L LN+E + D LS + SL L+L C+ + +G
Sbjct: 1141 LRNVRGSDISVESIGTSKSLVRLNIE---MRGELTDITPLSNITSLEELSLWECRDTLEG 1197
Query: 245 CEKFSKIGSLKVLNLGFNEITDECLVH-----------------------LKGLTNLESL 281
++ L+ L+LG ++I+D L + + LT LE L
Sbjct: 1198 AWTLERLPRLRSLDLGLSDISDSTLYYICLSRFITSLNLTSSWKLTDISGISKLTALEEL 1257
Query: 282 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS-GLRHLSGLTNLESINLSFTGISDGS 340
NL C G L+ L L+ L L T V + G ++S +L ++N+ + ++D S
Sbjct: 1258 NLRGCHRITSGWEALSELPRLRVLNLESTSVTTRDGGYYISRCKSLVTLNIQLSDMTDAS 1317
Query: 341 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
LA + +L+ L++ G +AL +L L L+L G+ ITD
Sbjct: 1318 C--LANIKTLEELHIGECDELTQGFSALFTLPRLRILNLMGSLITD 1361
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 83/282 (29%), Positives = 119/282 (42%), Gaps = 55/282 (19%)
Query: 133 LVKLDLERCTRIHGGLVNLKGL---MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISC 189
L++L LE T GL++++ L + LE L++ C I D+ + L L LK L +S
Sbjct: 518 LLQLTLESIT----GLIDVEALANILTLEKLSLHGCTGI-DAGIGCLGNLPQLKMLDLSG 572
Query: 190 SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 249
+ + + L Q + LNL C + +S+L +L LNLN C + G E
Sbjct: 573 TNTDNESLRSLCLSQTMVSLNLSHC-WKMTNVSHISSLEALNELNLNNCFGINAGWEAIE 631
Query: 250 KIGSLKVLNLGFNEITDECLVH-----------------------LKGLTNLESLNLDSC 286
K+ L V L ITD + H L +T LE LNLDSC
Sbjct: 632 KLQQLHVAILSNTHITDRDISHFSKCKNLVTLDLSFCNKLLDVTTLSNITTLEELNLDSC 691
Query: 287 GIGDEGLV---NLTGLC--NLKCLELSDTQVGSSG---------LRH---------LSGL 323
+GL L LC N+K +EL D+ +GS G L H LS L
Sbjct: 692 SNIRKGLSVLGELPRLCVLNIKGVELEDSVIGSLGNGNSFVRLSLEHCKGFGDVTPLSNL 751
Query: 324 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 365
LE +NL + + L L L+ L+L Q+ + L
Sbjct: 752 VTLEELNLHYCDKVTSGMGTLGRLLQLRVLDLGRTQVDNNSL 793
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 88/341 (25%), Positives = 140/341 (41%), Gaps = 81/341 (23%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISD-------------------GGLEHLRG 104
LS +++T + L C L L F++C ++SD GL+ L
Sbjct: 1070 LSDTNITAKDIACLSSCKTLVKLQFSWCEELSDVTVVYEIQSLEELIVKKYSDGLKGLNA 1129
Query: 105 LSNLTSLSFR--RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN---LKGLMKLES 159
L L L F RN + +++ +LV+L++E + G L + L + LE
Sbjct: 1130 LGTLPRLRFLHLRNVRGSDISVESIGTSKSLVRLNIE----MRGELTDITPLSNITSLEE 1185
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL------------------- 200
L++ C + L L L+SL + S ++DS + Y+
Sbjct: 1186 LSLWECRDTLEGAWT-LERLPRLRSLDLGLSDISDSTLYYICLSRFITSLNLTSSWKLTD 1244
Query: 201 -KGLQKLTLL---NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD-DGCEKFSKIGSLK 255
G+ KLT L NL GC + ++LS L L LNL ++ DG S+ SL
Sbjct: 1245 ISGISKLTALEELNLRGCHRITSGWEALSELPRLRVLNLESTSVTTRDGGYYISRCKSLV 1304
Query: 256 VLNLGFNEITD-ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 314
LN+ +++TD CL ++K L L IG+ C EL+
Sbjct: 1305 TLNIQLSDMTDASCLANIKTLEELH--------IGE-------------CDELTQ----- 1338
Query: 315 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355
G L L L +NL + I+D LR++ +++ LNL
Sbjct: 1339 -GFSALFTLPRLRILNLMGSLITDEDLREIQPPHTIEELNL 1378
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 84/287 (29%), Positives = 131/287 (45%), Gaps = 54/287 (18%)
Query: 155 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEG 213
+KL L++ CN ITD+ P+S L L+ L + SC +T GI L L +L +L+L G
Sbjct: 303 VKLSKLSVSECNNITDA--TPISQLAALEELNVNSCYHIT-KGIGTLGMLLRLRMLDLSG 359
Query: 214 CPVTAACLDSLSALGSLFYLNLNRC-QLSD---------------DGCEKFSK------- 250
PV CL L GSL LNL+ C QL+D +GC + ++
Sbjct: 360 VPVEDNCLKDLCDCGSLERLNLSYCIQLTDINPLSSATAIEELNLNGCRRITRGIGVVWA 419
Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGD----EGLVNLTGLCNLKCL 305
+ L+VL++ ++ D + L + L+L++C G GD +V L L KC
Sbjct: 420 LPKLRVLHMKDVQLEDSVIGSLGNGNSFVRLSLENCAGFGDMTLLSSIVTLEELNIQKCA 479
Query: 306 ELSDTQVGSSGLRHLSGLTNLESINLS---FTGISDGS---------------LRKLAGL 347
++ + VG G + N++ +++S FTGI + LA +
Sbjct: 480 DII-SGVGCLGTLPYLRVLNVKEVHISSLDFTGIGASKSLLQLTLESITGLIDVEALANI 538
Query: 348 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRS 394
+L+ L+L D G+ L +L L LDL G T++ LRS
Sbjct: 539 LTLEKLSLHGCTGIDAGIGCLGNLPQLKMLDLSG---TNTDNESLRS 582
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 102/404 (25%), Positives = 157/404 (38%), Gaps = 108/404 (26%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
LS + + D + ++ +C +L +L+ FC I+D
Sbjct: 855 LSNTRINDENVRYVSECKSLNTLNLAFCKDITD--------------------------- 887
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
+ A + + L +L+L+ C I G+ L L K L++K C + DSD + S L N K
Sbjct: 888 VTALSKITMLEELNLDCCHNIRKGIETLGKLPKARILSMKECY-MGDSDAQQCSILGNSK 946
Query: 184 SL-----QISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
SL + S ++ ++ + L++L L + C+ S S L L LNL
Sbjct: 947 SLVKLNLERSMGFISVKALSNIATLEELVLDHAR----EVCCIPSFSCLPRLRVLNLKYT 1002
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GI--GDEGL-- 293
++ D + S+ SL++LNL + + V L L+ LE LN+ SC GI G E L
Sbjct: 1003 DINGDVTKNISESKSLRLLNLSHCKWVTDISV-LSSLSTLEELNVSSCYGIKKGWESLGK 1061
Query: 294 -----------VNLTG-----------LCNLK---CLELSDTQV---------------- 312
N+T L L+ C ELSD V
Sbjct: 1062 LPLLRVAILSDTNITAKDIACLSSCKTLVKLQFSWCEELSDVTVVYEIQSLEELIVKKYS 1121
Query: 313 -GSSGLRHLSGLTNLESINLSFTGISDGSLR-----------------------KLAGLS 348
G GL L L L ++L SD S+ L+ ++
Sbjct: 1122 DGLKGLNALGTLPRLRFLHLRNVRGSDISVESIGTSKSLVRLNIEMRGELTDITPLSNIT 1181
Query: 349 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
SL+ L+L + T G L L L LDL + I+DS Y+
Sbjct: 1182 SLEELSLWECRDTLEGAWTLERLPRLRSLDLGLSDISDSTLYYI 1225
Score = 45.8 bits (107), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 68/138 (49%), Gaps = 6/138 (4%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLL 209
+ L LE LN++ C+ IT S + LS L L+ L + S S T G Y+ + L L
Sbjct: 1248 ISKLTALEELNLRGCHRIT-SGWEALSELPRLRVLNLESTSVTTRDGGYYISRCKSLVTL 1306
Query: 210 NLEGCPVT-AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 268
N++ +T A+CL ++ L L ++ C G + L++LNL + ITDE
Sbjct: 1307 NIQLSDMTDASCLANIKTLEEL---HIGECDELTQGFSALFTLPRLRILNLMGSLITDED 1363
Query: 269 LVHLKGLTNLESLNLDSC 286
L ++ +E LNL C
Sbjct: 1364 LREIQPPHTIEELNLSYC 1381
>gi|301768595|ref|XP_002919716.1| PREDICTED: f-box/LRR-repeat protein 13-like [Ailuropoda
melanoleuca]
Length = 737
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 103/395 (26%), Positives = 171/395 (43%), Gaps = 85/395 (21%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGL-IHLKDCSNLQSLDFNFC 91
LQ+L + P + D+ M I+ +L ++LS + +T+ + I + NLQ+L +C
Sbjct: 249 LQELNVSDCPTLTDESMRYISEGCPGVLYLNLSNTTITNRTMRILPRYFQNLQNLSLAYC 308
Query: 92 IQISDGGLEHLR---GLSNLTSLSFRRNNAITAQGMKAFA----GLINL----------- 133
+ +D GL +L G L L I+ QG + A G+++L
Sbjct: 309 RKFTDKGLRYLNLGNGCHKLIYLDLSGCTQISVQGFRNIANSCTGIMHLTINDMPTLTDN 368
Query: 134 -VKLDLERCTRI---------HGGLVNLKGL--MKLESLNIKWCNCITDSDMKPL-SGLT 180
VK +E+C+RI H K L L + + ITD+ K +
Sbjct: 369 CVKALVEKCSRITSIVFIGAPHISDCAFKALSTCNLTKIRFEGNKRITDACFKSIDKNYP 428
Query: 181 NLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 239
N+ + ++ C ++TD + L L++LT+LNL C
Sbjct: 429 NISHIYMADCKRITDGSLKSLSPLKQLTVLNLANC------------------------- 463
Query: 240 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTG 298
++IG ++G + D + T + LNL +C + D +V L+
Sbjct: 464 ---------TRIG-----DMGLRQFLDGPVS-----TRIRELNLSNCIQLSDVSIVKLSE 504
Query: 299 LC-NLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL- 355
C NL L L + + V G+ ++ + +L SI+LS T ISD L L+ LK L+L
Sbjct: 505 RCPNLNYLSLRNCEYVTELGIEYIVNIFSLLSIDLSGTHISDEGLMILSRHKKLKELSLS 564
Query: 356 DARQITDTGLAALT--SLTGLTHLDL-FGARITDS 387
+ +ITD G+ A SL L HLD+ + ++TD
Sbjct: 565 ECYKITDVGIQAFCKGSLI-LEHLDVSYCPQLTDE 598
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 94/375 (25%), Positives = 154/375 (41%), Gaps = 75/375 (20%)
Query: 87 DFNFCIQISDGGLEHLRGLSNLTSLSFRR-NNAITAQGMKAF--AGLINLVKLDLERCTR 143
D C Q+ + +G S S+ F N IT + + + +N+++L+ C
Sbjct: 176 DIVICGQVCHSWMLMTQGSSLWNSIDFSAVKNIITEKCIVSTLQRWRLNVLRLNFRGCVL 235
Query: 144 IHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG------------------------- 178
L ++ L+ LN+ C +TD M+ +S
Sbjct: 236 RLKTLRSVSLCRNLQELNVSDCPTLTDESMRYISEGCPGVLYLNLSNTTITNRTMRILPR 295
Query: 179 -LTNLKSLQIS-CSKVTDSGIAYL---KGLQKLTLLNLEGCPVTAACLDSLSALGS---- 229
NL++L ++ C K TD G+ YL G KL L+L GC T + + +
Sbjct: 296 YFQNLQNLSLAYCRKFTDKGLRYLNLGNGCHKLIYLDLSGC--TQISVQGFRNIANSCTG 353
Query: 230 LFYLNLNRCQLSDDGC-----EKFSKIGSL----------------------KVLNLGFN 262
+ +L +N D C EK S+I S+ K+ G
Sbjct: 354 IMHLTINDMPTLTDNCVKALVEKCSRITSIVFIGAPHISDCAFKALSTCNLTKIRFEGNK 413
Query: 263 EITDECLVHL-KGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRH 319
ITD C + K N+ + + C I D L +L+ L L L L++ T++G GLR
Sbjct: 414 RITDACFKSIDKNYPNISHIYMADCKRITDGSLKSLSPLKQLTVLNLANCTRIGDMGLRQ 473
Query: 320 -LSGL--TNLESINLS-FTGISDGSLRKLAG-LSSLKSLNL-DARQITDTGLAALTSLTG 373
L G T + +NLS +SD S+ KL+ +L L+L + +T+ G+ + ++
Sbjct: 474 FLDGPVSTRIRELNLSNCIQLSDVSIVKLSERCPNLNYLSLRNCEYVTELGIEYIVNIFS 533
Query: 374 LTHLDLFGARITDSG 388
L +DL G I+D G
Sbjct: 534 LLSIDLSGTHISDEG 548
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 79/163 (48%), Gaps = 31/163 (19%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
SLLS+DLSG+ ++D GL+ L L+ L + C +I+D G++
Sbjct: 533 SLLSIDLSGTHISDEGLMILSRHKKLKELSLSECYKITDVGIQ----------------- 575
Query: 118 AITAQGMKAF-AGLINLVKLDLERCTRIHGGLVNLKGL--MKLESLNIKWCNCITDSDMK 174
AF G + L LD+ C ++ +V + + L SL++ C ITDS M+
Sbjct: 576 --------AFCKGSLILEHLDVSYCPQLTDEIVKALAIYCIHLTSLSVAGCPQITDSAME 627
Query: 175 PLSGLTN-LKSLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGC 214
LS + L L IS C +TD + L +G ++L +L ++ C
Sbjct: 628 MLSAKCHYLHILDISGCILLTDQMLEDLQRGCKQLRILKMQYC 670
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 76/151 (50%), Gaps = 5/151 (3%)
Query: 81 SNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE 139
+ ++ L+ + CIQ+SD + L NL LS R +T G++ + +L+ +DL
Sbjct: 481 TRIRELNLSNCIQLSDVSIVKLSERCPNLNYLSLRNCEYVTELGIEYIVNIFSLLSIDLS 540
Query: 140 RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL-SGLTNLKSLQIS-CSKVTDSGI 197
GL+ L KL+ L++ C ITD ++ G L+ L +S C ++TD +
Sbjct: 541 GTHISDEGLMILSRHKKLKELSLSECYKITDVGIQAFCKGSLILEHLDVSYCPQLTDEIV 600
Query: 198 AYLKGL-QKLTLLNLEGCP-VTAACLDSLSA 226
L LT L++ GCP +T + ++ LSA
Sbjct: 601 KALAIYCIHLTSLSVAGCPQITDSAMEMLSA 631
>gi|384178504|ref|YP_005564266.1| internalin protein [Bacillus thuringiensis serovar finitimus
YBT-020]
gi|324324588|gb|ADY19848.1| internalin protein [Bacillus thuringiensis serovar finitimus
YBT-020]
Length = 1295
Score = 70.1 bits (170), Expect = 2e-09, Method: Composition-based stats.
Identities = 66/218 (30%), Positives = 111/218 (50%), Gaps = 18/218 (8%)
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
G+ +LKGL +E+L ++ P+S L LK + +S +K+ + + L L++L
Sbjct: 226 GIESLKGLEYMENLERLTIQGSDVRNIAPISQLKRLKVVDLSFNKIEN--VEPLVNLERL 283
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 266
+L L+ + ++ LS L + +NL+ ++SD + + SL+ L + N+ITD
Sbjct: 284 DILELQNNRIVD--INPLSQLKKVRTVNLSGNKISD--IKPLYNVSSLRKLYVSNNKITD 339
Query: 267 ECLVHLKGLTNLESLN-LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS-SGLRHLSGLT 324
LT +E LN L + GIG GLVN+ + + L D Q + LS LT
Sbjct: 340 --------LTGIEQLNKLGTLGIGSNGLVNIEPISEMSSLVELDLQKNDIKDITSLSNLT 391
Query: 325 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
+L+++NL +SD S L+ L++L L L +I D
Sbjct: 392 SLQALNLEENYVSDVS--SLSNLNNLYELKLATNEIRD 427
Score = 51.2 bits (121), Expect = 8e-04, Method: Composition-based stats.
Identities = 56/219 (25%), Positives = 106/219 (48%), Gaps = 18/219 (8%)
Query: 73 GLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLIN 132
G+ LK +++L+ IQ SD +R ++ ++ L + ++ ++ L+N
Sbjct: 226 GIESLKGLEYMENLE-RLTIQGSD-----VRNIAPISQLKRLKVVDLSFNKIENVEPLVN 279
Query: 133 LVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKV 192
L +LD+ + +V++ L +L+ + + SD+KPL +++L+ L +S +K+
Sbjct: 280 LERLDILELQ--NNRIVDINPLSQLKKVRTVNLSGNKISDIKPLYNVSSLRKLYVSNNKI 337
Query: 193 TDSGIAYLKGLQKLTLLNLEGCPVTAAC-LDSLSALGSLFYLNLNRCQLSDDGCEKFSKI 251
TD L G+++L L G ++ +S + SL L+L + + D S +
Sbjct: 338 TD-----LTGIEQLNKLGTLGIGSNGLVNIEPISEMSSLVELDLQKNDIKD--ITSLSNL 390
Query: 252 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
SL+ LNL N ++D + L L NL L L + I D
Sbjct: 391 TSLQALNLEENYVSD--VSSLSNLNNLYELKLATNEIRD 427
Score = 48.5 bits (114), Expect = 0.005, Method: Composition-based stats.
Identities = 53/174 (30%), Positives = 88/174 (50%), Gaps = 18/174 (10%)
Query: 122 QGMKAFAGL---INLVKLDLERCTRIHGGLV-NLKGLMKLESLNIKWCNCITDSDMKPLS 177
+G+ F+GL N+ +L L+ + + NL+GL ++ N N I DMKPL
Sbjct: 571 EGITDFSGLELMTNMEELTLKNVNMKNVEFISNLRGLKLVDLSN----NQI--EDMKPLQ 624
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
L NL+ L +S + + + + L +QKL L+L + A L + L +L L +N
Sbjct: 625 SLENLEKLNVSNNSIKN--VPELFKIQKLQNLDLSNNKLDHAALVGIHQLQNLDTLLVNN 682
Query: 238 CQLSD-DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
++++ D K SK+ L++++ N+I D + L L NL+ LNL I D
Sbjct: 683 NEINNLDEISKVSKLNKLEIMS---NKIRD--ISPLANLKNLQWLNLSDNKIKD 731
Score = 42.7 bits (99), Expect = 0.31, Method: Composition-based stats.
Identities = 48/195 (24%), Positives = 93/195 (47%), Gaps = 23/195 (11%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
L+K+++L I +D L +TN++ L + V + ++ L+ L L++L
Sbjct: 557 LLKVKTLKITDGEKEGITDFSGLELMTNMEELTLK--NVNMKNVEFISNLRGLKLVDLSN 614
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
+ + L +L +L LN++ + + + KI L+ L+L N++ LV +
Sbjct: 615 NQIED--MKPLQSLENLEKLNVSNNSIKN--VPELFKIQKLQNLDLSNNKLDHAALVGIH 670
Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLCNL----KCLELSDTQVGSSGLRHLSGLTNLESI 329
L NL++L LVN + NL K +L+ ++ S+ +R +S L NL+
Sbjct: 671 QLQNLDTL-----------LVNNNEINNLDEISKVSKLNKLEIMSNKIRDISPLANLK-- 717
Query: 330 NLSFTGISDGSLRKL 344
NL + +SD ++ +
Sbjct: 718 NLQWLNLSDNKIKDI 732
>gi|157866007|ref|XP_001681710.1| putative surface antigen protein [Leishmania major strain Friedlin]
gi|68125008|emb|CAJ02922.1| putative surface antigen protein [Leishmania major strain Friedlin]
Length = 760
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 103/219 (47%), Gaps = 1/219 (0%)
Query: 176 LSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
S +T+L L+I + +T + A ++ L LNLEG V+ S + SL L
Sbjct: 201 WSRVTSLLELEIVAAGDITGTLPAKWSSIKSLRTLNLEGTQVSGTLPSGWSEMKSLTSLE 260
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
L Q+S +S I SL+ LNL +++ + +L +LNL+ +
Sbjct: 261 LEGTQVSGTLPPGWSSIKSLRTLNLEGTQVSGSLPPQWVSMASLRTLNLEGTQVSGTLPP 320
Query: 295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 354
+ + +L LEL TQV + S + +L ++NL T +S + ++SL++LN
Sbjct: 321 GWSEMKSLTSLELEGTQVSGTLPLGWSEMKSLRTLNLEGTQVSGSLPPQWVSMASLRTLN 380
Query: 355 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
L+ Q++ T + + LT+L L G +++ S R
Sbjct: 381 LEGTQVSGTLPPGWSEMKSLTNLYLEGTQLSGSLPTEWR 419
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 88/388 (22%), Positives = 170/388 (43%), Gaps = 14/388 (3%)
Query: 6 ISQQIF---NELVYSRCLTEVSLEA-FRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
+S +F N Y+ L E+ + +R ++DL P ++ D + G LLS
Sbjct: 78 VSVDVFVGLNVSTYAGTLPEIPVNVDYRHVMIRDLGFWNMPLLSGTLPDSWSKLGG-LLS 136
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR---NNA 118
V SG V+ + L++L C ++ L N L R+ +
Sbjct: 137 VTFSGCGVSGTLPASWGLMVRLRALTVGNCRHLTGSLPSEWSWLPNFQILVLRQLQLSGT 196
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGL-VNLKGLMKLESLNIKWCNCITDSDMKPLS 177
+ A+ ++ + +L++L++ I G L + L +LN++ ++ + S
Sbjct: 197 LPAE----WSRVTSLLELEIVAAGDITGTLPAKWSSIKSLRTLNLE-GTQVSGTLPSGWS 251
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
+ +L SL++ ++V+ + ++ L LNLEG V+ + ++ SL LNL
Sbjct: 252 EMKSLTSLELEGTQVSGTLPPGWSSIKSLRTLNLEGTQVSGSLPPQWVSMASLRTLNLEG 311
Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
Q+S +S++ SL L L +++ + + +L +LNL+ +
Sbjct: 312 TQVSGTLPPGWSEMKSLTSLELEGTQVSGTLPLGWSEMKSLRTLNLEGTQVSGSLPPQWV 371
Query: 298 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 357
+ +L+ L L TQV + S + +L ++ L T +S + G+ SL +L L
Sbjct: 372 SMASLRTLNLEGTQVSGTLPPGWSEMKSLTNLYLEGTQLSGSLPTEWRGIKSLTNLYLKG 431
Query: 358 RQITDTGLAALTSLTGLTHLDLFGARIT 385
Q++ + +SLT L LDL G +++
Sbjct: 432 TQVSGSLPPQWSSLTSLRTLDLEGTQVS 459
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 55/231 (23%), Positives = 107/231 (46%), Gaps = 3/231 (1%)
Query: 127 FAGLINLVKLDLERCTRIHGGLVN-LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
++ + +L L+LE T++ G L + L +LN++ ++ S + +L++L
Sbjct: 250 WSEMKSLTSLELEG-TQVSGTLPPGWSSIKSLRTLNLE-GTQVSGSLPPQWVSMASLRTL 307
Query: 186 QISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 245
+ ++V+ + ++ LT L LEG V+ S + SL LNL Q+S
Sbjct: 308 NLEGTQVSGTLPPGWSEMKSLTSLELEGTQVSGTLPLGWSEMKSLRTLNLEGTQVSGSLP 367
Query: 246 EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 305
++ + SL+ LNL +++ + +L +L L+ + G+ +L L
Sbjct: 368 PQWVSMASLRTLNLEGTQVSGTLPPGWSEMKSLTNLYLEGTQLSGSLPTEWRGIKSLTNL 427
Query: 306 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
L TQV S S LT+L +++L T +S + + + S ++L L+
Sbjct: 428 YLKGTQVSGSLPPQWSSLTSLRTLDLEGTQVSGRLPPEWSRMLSAENLQLE 478
Score = 46.6 bits (109), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 66/305 (21%), Positives = 135/305 (44%), Gaps = 8/305 (2%)
Query: 54 SQGSSLLSVDL-SGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS 112
S+ +SLL +++ + D+T + +L++L+ Q+S + +LTSL
Sbjct: 202 SRVTSLLELEIVAAGDITGTLPAKWSSIKSLRTLNLEG-TQVSGTLPSGWSEMKSLTSLE 260
Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLV-NLKGLMKLESLNIKWCNCITDS 171
++ ++ + +L L+LE T++ G L + L +LN++
Sbjct: 261 LE-GTQVSGTLPPGWSSIKSLRTLNLEG-TQVSGSLPPQWVSMASLRTLNLE--GTQVSG 316
Query: 172 DMKP-LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
+ P S + +L SL++ ++V+ + ++ L LNLEG V+ + ++ SL
Sbjct: 317 TLPPGWSEMKSLTSLELEGTQVSGTLPLGWSEMKSLRTLNLEGTQVSGSLPPQWVSMASL 376
Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
LNL Q+S +S++ SL L L +++ +G+ +L +L L +
Sbjct: 377 RTLNLEGTQVSGTLPPGWSEMKSLTNLYLEGTQLSGSLPTEWRGIKSLTNLYLKGTQVSG 436
Query: 291 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 350
+ L +L+ L+L TQV S + + E++ L +S + + + L
Sbjct: 437 SLPPQWSSLTSLRTLDLEGTQVSGRLPPEWSRMLSAENLQLEHCDLSGSLPPEWSAMPRL 496
Query: 351 KSLNL 355
+ + L
Sbjct: 497 RLVGL 501
>gi|406830743|ref|ZP_11090337.1| hypothetical protein SpalD1_03864 [Schlesneria paludicola DSM
18645]
Length = 304
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 128/285 (44%), Gaps = 36/285 (12%)
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
R AI + G +++V +L + T G LK L +L ++ D++++
Sbjct: 32 REGAIVQRVDSLPDGPVSVVTYNLRQVT--DEGNRALKELFELPAIEFLGTG---DTELQ 86
Query: 175 P-----LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 229
P L G +LK L IS +K++D L L+ L +L L A LG
Sbjct: 87 PATLRALQGKRSLKRLSISFAKISDDSAKLLGTLRSLEVLELR-----AQVEIHPKVLGE 141
Query: 230 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 289
+F L SLK L L D + L+ + L++L + S +
Sbjct: 142 VFNLT------------------SLKELTLSDRLADDPAMEELRRMPYLKTLTVRSVFVS 183
Query: 290 DEGLVNLTGLCNLKCLE-LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 348
D GL +L + +L+ L L +V G+RHLS L +L +++++ ++D L+ L
Sbjct: 184 DAGLASLRQVKSLRNLRILLGPKVTEEGVRHLSEL-DLADLDITYLNVTDKELKSLRKFK 242
Query: 349 SLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
LK L L A ++TD + L+ L+ L LD+ A+++ +G L
Sbjct: 243 GLKGLRLVSAAKVTDEAVPFLSELSELKRLDIADAKLSKAGIGQL 287
Score = 45.8 bits (107), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 70/145 (48%), Gaps = 2/145 (1%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+SL + LS D + L+ L++L + +SD GL LR + +L +L
Sbjct: 146 TSLKELTLSDRLADDPAMEELRRMPYLKTLTVR-SVFVSDAGLASLRQVKSLRNLRILLG 204
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+T +G++ + L +L LD+ L +L+ L+ L + +TD + L
Sbjct: 205 PKVTEEGVRHLSEL-DLADLDITYLNVTDKELKSLRKFKGLKGLRLVSAAKVTDEAVPFL 263
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLK 201
S L+ LK L I+ +K++ +GI L+
Sbjct: 264 SELSELKRLDIADAKLSKAGIGQLE 288
Score = 44.7 bits (104), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 81/179 (45%), Gaps = 4/179 (2%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
L L L ++ +L +L SLK L++ F +I+D+ L L +LE
Sbjct: 65 ALKELFELPAIEFLGTGDTELQPATLRALQGKRSLKRLSISFAKISDDSAKLLGTLRSLE 124
Query: 280 SLNLDS-CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
L L + I + L + L +LK L LSD + L + L+++ + +SD
Sbjct: 125 VLELRAQVEIHPKVLGEVFNLTSLKELTLSDRLADDPAMEELRRMPYLKTLTVRSVFVSD 184
Query: 339 GSLRKLAGLSSLKSLN-LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRSKF 396
L L + SL++L L ++T+ G+ L+ L L LD+ +TD LR KF
Sbjct: 185 AGLASLRQVKSLRNLRILLGPKVTEEGVRHLSEL-DLADLDITYLNVTDKELKSLR-KF 241
>gi|290984031|ref|XP_002674731.1| predicted protein [Naegleria gruberi]
gi|284088323|gb|EFC41987.1| predicted protein [Naegleria gruberi]
Length = 356
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 99/221 (44%), Gaps = 8/221 (3%)
Query: 173 MKPLSGLTNLKSLQISCSK-VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
MK L+ L I C+ + + G Y+ L++LT L + + +S L L
Sbjct: 97 MKSLTEL-------IGCNNNIGNEGAKYISKLKQLTHLYILNNEIDDEGAKYISELNQLV 149
Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
L+++ + +G + S++ L L++ N I E H+ + L LN+ + IG E
Sbjct: 150 SLDISYNNIGVEGAKYISELKQLTNLDISVNHIGAEGAQHIAEMNQLTILNISTNNIGYE 209
Query: 292 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 351
G + L L CL + + + G +++S + L +N+S+ I + ++ L L
Sbjct: 210 GAKYIGKLKQLTCLTIFNNNIDVEGAKYISEMKQLTDLNISYNNIDVEGAKYISELKQLT 269
Query: 352 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
L++ QI G+ + + LT L I D GA Y+
Sbjct: 270 DLDISINQIGAKGVQYIAEMNQLTILSASHNNIGDEGAKYI 310
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/229 (25%), Positives = 109/229 (47%), Gaps = 4/229 (1%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
LK L L LN N I D K +S L L SL IS + + G Y+ L++LT L+
Sbjct: 121 LKQLTHLYILN----NEIDDEGAKYISELNQLVSLDISYNNIGVEGAKYISELKQLTNLD 176
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
+ + A ++ + L LN++ + +G + K+ L L + N I E
Sbjct: 177 ISVNHIGAEGAQHIAEMNQLTILNISTNNIGYEGAKYIGKLKQLTCLTIFNNNIDVEGAK 236
Query: 271 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 330
++ + L LN+ I EG ++ L L L++S Q+G+ G+++++ + L ++
Sbjct: 237 YISEMKQLTDLNISYNNIDVEGAKYISELKQLTDLDISINQIGAKGVQYIAEMNQLTILS 296
Query: 331 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
S I D + ++ + L +L++ I++ G+ + + LT L++
Sbjct: 297 ASHNNIGDEGAKYISEMKQLTNLDISNNSISNEGVKCIEEMKHLTVLNI 345
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 61/260 (23%), Positives = 117/260 (45%), Gaps = 4/260 (1%)
Query: 130 LINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISC 189
L N+ L++ + LV +K L +L N N I + K +S L L L I
Sbjct: 76 LQNIATLEINTTFDNYKKLVLMKSLTELIGCN----NNIGNEGAKYISKLKQLTHLYILN 131
Query: 190 SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 249
+++ D G Y+ L +L L++ + +S L L L+++ + +G + +
Sbjct: 132 NEIDDEGAKYISELNQLVSLDISYNNIGVEGAKYISELKQLTNLDISVNHIGAEGAQHIA 191
Query: 250 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 309
++ L +LN+ N I E ++ L L L + + I EG ++ + L L +S
Sbjct: 192 EMNQLTILNISTNNIGYEGAKYIGKLKQLTCLTIFNNNIDVEGAKYISEMKQLTDLNISY 251
Query: 310 TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 369
+ G +++S L L +++S I ++ +A ++ L L+ I D G ++
Sbjct: 252 NNIDVEGAKYISELKQLTDLDISINQIGAKGVQYIAEMNQLTILSASHNNIGDEGAKYIS 311
Query: 370 SLTGLTHLDLFGARITDSGA 389
+ LT+LD+ I++ G
Sbjct: 312 EMKQLTNLDISNNSISNEGV 331
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/262 (22%), Positives = 111/262 (42%), Gaps = 26/262 (9%)
Query: 94 ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
I + G +++ L LT L + NN I +G K + L LV LD+
Sbjct: 110 IGNEGAKYISKLKQLTHL-YILNNEIDDEGAKYISELNQLVSLDISY------------- 155
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
N I K +S L L +L IS + + G ++ + +LT+LN+
Sbjct: 156 ------------NNIGVEGAKYISELKQLTNLDISVNHIGAEGAQHIAEMNQLTILNIST 203
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
+ + L L L + + +G + S++ L LN+ +N I E ++
Sbjct: 204 NNIGYEGAKYIGKLKQLTCLTIFNNNIDVEGAKYISEMKQLTDLNISYNNIDVEGAKYIS 263
Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333
L L L++ IG +G+ + + L L S +G G +++S + L ++++S
Sbjct: 264 ELKQLTDLDISINQIGAKGVQYIAEMNQLTILSASHNNIGDEGAKYISEMKQLTNLDISN 323
Query: 334 TGISDGSLRKLAGLSSLKSLNL 355
IS+ ++ + + L LN+
Sbjct: 324 NSISNEGVKCIEEMKHLTVLNI 345
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 101/212 (47%), Gaps = 15/212 (7%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ + L+S+D+S +++ G ++ + L +LD + I G +H+ ++ LT L+
Sbjct: 143 SELNQLVSLDISYNNIGVEGAKYISELKQLTNLDISVN-HIGAEGAQHIAEMNQLTILNI 201
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG------LMKLESLNIKWCNC 167
NN I +G K L L C I ++++G + +L LNI + N
Sbjct: 202 STNN-IGYEGAKYIGKLKQLT------CLTIFNNNIDVEGAKYISEMKQLTDLNISY-NN 253
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
I K +S L L L IS +++ G+ Y+ + +LT+L+ + +S +
Sbjct: 254 IDVEGAKYISELKQLTDLDISINQIGAKGVQYIAEMNQLTILSASHNNIGDEGAKYISEM 313
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 259
L L+++ +S++G + ++ L VLN+
Sbjct: 314 KQLTNLDISNNSISNEGVKCIEEMKHLTVLNI 345
>gi|84043398|ref|XP_951489.1| hypothetical protein [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|33348218|gb|AAQ15545.1| leucine-rich repeat protein (LRRP), putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
gi|62359994|gb|AAX80418.1| leucine-rich repeat protein (LRRP), putative [Trypanosoma brucei]
Length = 1110
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 99/373 (26%), Positives = 164/373 (43%), Gaps = 62/373 (16%)
Query: 65 SGSDVTDSGLIHLKDCSNLQSLDFNFCIQISD-------GGLEHL---------RGLSNL 108
SG V D+ L L DC +L+ L+ ++CIQ++D +E L RG+ +
Sbjct: 303 SGVPVEDNCLKDLCDCGSLERLNISYCIQLTDINPLSNATAIEELNLNGCRRITRGIGVV 362
Query: 109 TSLSFRR-----NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 163
+L R + ++ + + +LV+L LE C + G + L L+ LE LN+
Sbjct: 363 WALPKLRVLHMKDVHLSEPSLDSVGTGGSLVRLSLENC-KGFGDVKPLSNLVTLEELNLH 421
Query: 164 WCNCITDSDMKPLSGLTNLKSLQI--------------------------SCSKVTD-SG 196
+C+ +T S M L L L+ L + C K+T S
Sbjct: 422 YCDKVT-SGMGTLGRLPQLRVLDLGRTQVDNNSLENICTSSIPLVSLNLSHCKKITSISA 480
Query: 197 IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 256
IA L L++L + N C VT+ + L L L+ +++D+ S+ SL
Sbjct: 481 IASLTALEELNIDN--SCNVTSG-WNVFGTLHQLRVATLSNTRINDENIRHVSECKSLNT 537
Query: 257 LNLGF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 315
LNL F +ITD + L +T LE LNLD C +G+ L L + L + + +G
Sbjct: 538 LNLAFCKDITD--VTALSKITMLEELNLDCCPNIRKGIETLGKLPKARILSMKECYMGDG 595
Query: 316 GLRHLSGLTNLESINLSFTGISDG--SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 373
+ S L N +S+ S G S++ L+ +++L+ L LD + + + S +
Sbjct: 596 YAQQCSILGNSKSLVKLNLERSMGFISVKALSNIATLEELVLDHAE----EVCCIPSFSC 651
Query: 374 LTHLDLFGARITD 386
L L + + TD
Sbjct: 652 LPRLRVLNLKYTD 664
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 101/362 (27%), Positives = 150/362 (41%), Gaps = 76/362 (20%)
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL---DLERCTRIHG--GLVNLKGL-- 154
L+ L L L FR NN I + ++ L +L D + T I G L NLK L
Sbjct: 173 LKRLHMLKRLCFRSNN-IDNNDARHLFNIVTLEELAITDTMQLTNIRGISRLTNLKCLEL 231
Query: 155 ----------------MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGI 197
KL L++ CN ITD+ P+S L L+ L + SC +T GI
Sbjct: 232 NSTDIDDSCIGEISACAKLSKLSVSECNNITDA--TPISQLAALEELNLNSCYHIT-KGI 288
Query: 198 AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC-QLSD-------------- 242
L L +L +L+L G PV CL L GSL LN++ C QL+D
Sbjct: 289 ETLGMLLRLRMLDLSGVPVEDNCLKDLCDCGSLERLNISYCIQLTDINPLSNATAIEELN 348
Query: 243 -DGCEKFSK-------IGSLKVLNLGFNEITDECL-----------------------VH 271
+GC + ++ + L+VL++ +++ L
Sbjct: 349 LNGCRRITRGIGVVWALPKLRVLHMKDVHLSEPSLDSVGTGGSLVRLSLENCKGFGDVKP 408
Query: 272 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL-SGLTNLESIN 330
L L LE LNL C G+ L L L+ L+L TQV ++ L ++ + L S+N
Sbjct: 409 LSNLVTLEELNLHYCDKVTSGMGTLGRLPQLRVLDLGRTQVDNNSLENICTSSIPLVSLN 468
Query: 331 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 390
LS S+ +A L++L+ LN+D +G +L L L RI D
Sbjct: 469 LSHCK-KITSISAIASLTALEELNIDNSCNVTSGWNVFGTLHQLRVATLSNTRINDENIR 527
Query: 391 YL 392
++
Sbjct: 528 HV 529
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 94/198 (47%), Gaps = 17/198 (8%)
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAY-LKGLQKLTL 208
++ L LE LN++ C IT S + LS L L+ L + + VT Y + + L
Sbjct: 908 HISNLTALEELNLRRCYPIT-SGWEALSELPRLRVLNLESASVTTRYDGYYISRCKSLVT 966
Query: 209 LNLEGCPVT-AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 267
LNLE C +T A+CL ++ L L ++ RC+ G + L++LNL + I DE
Sbjct: 967 LNLESCDMTDASCLANIKTLEEL---HIGRCKELRRGFSPLFTLPRLRILNLICSLIKDE 1023
Query: 268 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL------ELSDTQVGSSGLRHLS 321
L ++ +E LNL C E L ++T L +K + + D + + G R L
Sbjct: 1024 DLREIQPPHTIEELNLSYC----ENLNDITPLGRIKSIKKLHLRQSHDARRPTEGFRSLL 1079
Query: 322 GLTNLESINL-SFTGISD 338
L L ++L + G SD
Sbjct: 1080 ELPCLSWVDLNNVCGWSD 1097
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 90/349 (25%), Positives = 153/349 (43%), Gaps = 58/349 (16%)
Query: 98 GLEHLRGLSNLTSLS-FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLV-NLKGLM 155
G ++ LSN+ +L ++A + +F+ L L L+L + T I+G + N+
Sbjct: 619 GFISVKALSNIATLEELVLDHAEEVCCIPSFSCLPRLRVLNL-KYTDINGDVTKNISESK 677
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215
L SLN+ C +TD + LS L+ L+ L ++C G L L L + L
Sbjct: 678 SLRSLNLSHCKWVTD--ISVLSSLSTLEELNVNCCNGIRKGWESLGKLPLLRVAILSDTN 735
Query: 216 VTAACLDSLSALGSLFYLNLNRCQ-LSD-------------------DGCEKFSKIGS-- 253
+ A + LS+ +L L RC+ LSD DG + + +G+
Sbjct: 736 IAAKDIACLSSCKTLVKLKFFRCEKLSDVTVVYKIQSLEELIVRSCSDGLKGLNDLGTLP 795
Query: 254 --------------LKVLNLGFN------------EITDECLVHLKGLTNLESLNLDSCG 287
+ V ++G + E+TD + L +T+LE L+L CG
Sbjct: 796 RLRFLLLRNVRGSDISVESIGTSKSLVRLHIEMRKELTD--ITPLSNITSLEELSLRECG 853
Query: 288 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT-GISDGSLRKLAG 346
EG+ L L LK L+L + + +S L + ++ S+NL+ + ++D S ++
Sbjct: 854 DNLEGVGTLGKLPRLKSLDLGLSDISNSALNDIFLSRSITSLNLASSWKLTDIS--HISN 911
Query: 347 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRSK 395
L++L+ LNL +G AL+ L L L+L A +T Y S+
Sbjct: 912 LTALEELNLRRCYPITSGWEALSELPRLRVLNLESASVTTRYDGYYISR 960
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 77/304 (25%), Positives = 134/304 (44%), Gaps = 40/304 (13%)
Query: 83 LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT 142
L+ L+ ++C +++ G+ L L L L R I LV L+L C
Sbjct: 415 LEELNLHYCDKVT-SGMGTLGRLPQLRVLDLGRTQVDNNSLENICTSSIPLVSLNLSHCK 473
Query: 143 RIHGGLVNLKGLMKLESLNI-KWCNC----------------------ITDSDMKPLSGL 179
+I + + L LE LNI CN I D +++ +S
Sbjct: 474 KI-TSISAIASLTALEELNIDNSCNVTSGWNVFGTLHQLRVATLSNTRINDENIRHVSEC 532
Query: 180 TNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
+L +L ++ C +TD + L + L LNL+ CP +++L L L++ C
Sbjct: 533 KSLNTLNLAFCKDITD--VTALSKITMLEELNLDCCPNIRKGIETLGKLPKARILSMKEC 590
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN---LESLNLDSCGIGDEG--L 293
+ D ++ S +G+ K L + N + +K L+N LE L LD +E +
Sbjct: 591 YMGDGYAQQCSILGNSKSL-VKLNLERSMGFISVKALSNIATLEELVLDH---AEEVCCI 646
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKS 352
+ + L L+ L L T + +++S +L S+NLS ++D S+ L+ LS+L+
Sbjct: 647 PSFSCLPRLRVLNLKYTDINGDVTKNISESKSLRSLNLSHCKWVTDISV--LSSLSTLEE 704
Query: 353 LNLD 356
LN++
Sbjct: 705 LNVN 708
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 82/318 (25%), Positives = 138/318 (43%), Gaps = 35/318 (11%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEH----------------LRGLSN 107
LS +++ + L C L L F C ++SD + + L+GL++
Sbjct: 731 LSDTNIAAKDIACLSSCKTLVKLKFFRCEKLSDVTVVYKIQSLEELIVRSCSDGLKGLND 790
Query: 108 L-TSLSFRRNNAITAQG----MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
L T R +G +++ +LV+L +E + + L + LE L++
Sbjct: 791 LGTLPRLRFLLLRNVRGSDISVESIGTSKSLVRLHIEMRKEL-TDITPLSNITSLEELSL 849
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
+ C + + L L LKSL + S +++S + + + +T LNL +
Sbjct: 850 RECGDNLEG-VGTLGKLPRLKSLDLGLSDISNSALNDIFLSRSITSLNL-ASSWKLTDIS 907
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL-VHLKGLTNLESL 281
+S L +L LNL RC G E S++ L+VLNL +T ++ +L +L
Sbjct: 908 HISNLTALEELNLRRCYPITSGWEALSELPRLRVLNLESASVTTRYDGYYISRCKSLVTL 967
Query: 282 NLDSCGIGDEG-LVNLTGLCNL---KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 337
NL+SC + D L N+ L L +C EL G L L L +NL + I
Sbjct: 968 NLESCDMTDASCLANIKTLEELHIGRCKELR------RGFSPLFTLPRLRILNLICSLIK 1021
Query: 338 DGSLRKLAGLSSLKSLNL 355
D LR++ +++ LNL
Sbjct: 1022 DEDLREIQPPHTIEELNL 1039
>gi|294461100|gb|ADE76117.1| unknown [Picea sitchensis]
Length = 335
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/238 (25%), Positives = 113/238 (47%), Gaps = 38/238 (15%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR 103
V ++ + ++ L +DL+ + ++GL + CS L +L+ FC+ IS G+ H+
Sbjct: 80 VTERSLTMLGEGCPFLQELDLTDCRINNTGLKSISRCSELITLNLGFCLNISAEGIYHIG 139
Query: 104 G-LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
SNL L+ R+ G++A A G +L+S+NI
Sbjct: 140 ACCSNLQELNLYRSVGTGDAGLEAIA-----------------------NGCPRLKSINI 176
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLK-GLQKLTLLNLEGCPVT--A 218
+C +TD+ MK +S L L +L+I C ++ +G++ + G +++ L+++GC A
Sbjct: 177 SYCINVTDNSMKSISRLQKLHNLEIRGCPGISSAGLSAIALGCKRIVALDVKGCYNIDDA 236
Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 276
L + +L +N++ C +SD G +++ L+ + LVHLK +T
Sbjct: 237 GILAIADSCQNLRQINVSYCPISDVGLSTLARLSCLQNMK----------LVHLKNVT 284
Score = 45.4 bits (106), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 78/295 (26%), Positives = 121/295 (41%), Gaps = 68/295 (23%)
Query: 152 KGLMKLESLNIKWCNCITDSDMKPLSGL-TNLKSLQISCSK-VTDSGI-AYLKGLQKLTL 208
K L +++ C +TD + ++ T L L ++C + +TD I A + L+
Sbjct: 12 KSCKSLREISLSKCIGVTDDGISAIAACCTELNKLDLTCCRDLTDIAIKAVATSCRYLSS 71
Query: 209 LNLEGCPVTAACLDSLSALGS----LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN-E 263
+E C + SL+ LG L L+L C++++ G + S+ L LNLGF
Sbjct: 72 FMMESCGLVTE--RSLTMLGEGCPFLQELDLTDCRINNTGLKSISRCSELITLNLGFCLN 129
Query: 264 ITDECLVHLKGL-TNLESLNL-DSCGIGDEGLVNLTGLC-NLK------CLELSDTQ--- 311
I+ E + H+ +NL+ LNL S G GD GL + C LK C+ ++D
Sbjct: 130 ISAEGIYHIGACCSNLQELNLYRSVGTGDAGLEAIANGCPRLKSINISYCINVTDNSMKS 189
Query: 312 -----------------VGSSGLRHLS---------------------------GLTNLE 327
+ S+GL ++ NL
Sbjct: 190 ISRLQKLHNLEIRGCPGISSAGLSAIALGCKRIVALDVKGCYNIDDAGILAIADSCQNLR 249
Query: 328 SINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLA-ALTSLTGLTHLDLF 380
IN+S+ ISD L LA LS L+++ L + +T G A AL L L LF
Sbjct: 250 QINVSYCPISDVGLSTLARLSCLQNMKLVHLKNVTVNGFASALLDCESLKKLKLF 304
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 73/297 (24%), Positives = 118/297 (39%), Gaps = 85/297 (28%)
Query: 78 KDCSNLQSLDFNFCIQISDGGLEHLRG-LSNLTSLSFRRNNAITAQGMKAFA-------- 128
K C +L+ + + CI ++D G+ + + L L +T +KA A
Sbjct: 12 KSCKSLREISLSKCIGVTDDGISAIAACCTELNKLDLTCCRDLTDIAIKAVATSCRYLSS 71
Query: 129 ------GLIN-------------LVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCIT 169
GL+ L +LDL C + GL ++ +L +LN+ +C I+
Sbjct: 72 FMMESCGLVTERSLTMLGEGCPFLQELDLTDCRINNTGLKSISRCSELITLNLGFCLNIS 131
Query: 170 --------------------------DSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLK 201
D+ ++ ++ G LKS+ IS C VTD+ + +
Sbjct: 132 AEGIYHIGACCSNLQELNLYRSVGTGDAGLEAIANGCPRLKSINISYCINVTDNSMKSIS 191
Query: 202 GLQKLTLLNLEGCP-VTAACLDSLSALG--SLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 258
LQKL L + GCP +++A L ++ ALG + L++ C DD
Sbjct: 192 RLQKLHNLEIRGCPGISSAGLSAI-ALGCKRIVALDVKGCYNIDDA-------------- 236
Query: 259 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG---LVNLTGLCNLKCLELSDTQV 312
G I D C NL +N+ C I D G L L+ L N+K + L + V
Sbjct: 237 -GILAIADSC-------QNLRQINVSYCPISDVGLSTLARLSCLQNMKLVHLKNVTV 285
>gi|421897504|ref|ZP_16327872.1| type III effector protein gala5 [Ralstonia solanacearum MolK2]
gi|206588710|emb|CAQ35673.1| type III effector protein gala5 [Ralstonia solanacearum MolK2]
Length = 533
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 88/335 (26%), Positives = 143/335 (42%), Gaps = 3/335 (0%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
L+ ++LSG+ + L + L LD + C I L + LT+L+ RN
Sbjct: 165 PLVRLNLSGNRIGPVEARLLANHPTLTELDVSRC-GIGPEEARALAASARLTTLNASRN- 222
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
+ +G++A L LDL L +L +LN+ N I + L+
Sbjct: 223 GVGGEGVRALVDCKTLTSLDLSENGLGDAEAQRLGASERLTTLNVNR-NRIDVQGARALA 281
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
L SL I + + D+G+ L +LT LN+E V A + +L+ +L L ++
Sbjct: 282 DCKTLTSLDIGGNSIGDAGVEALLANAQLTTLNVERAGVGAHGVQALADSKTLTSLRIDN 341
Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
+ D+G + + SL L+ N I L T L +LNL GIGD G
Sbjct: 342 NNIGDEGAKTLAASTSLTTLHSESNGIGLAGAKALAANTRLTTLNLGHNGIGDAGAQAWL 401
Query: 298 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 357
L L + + +G L+ L +++ I D R LA +L +L++ +
Sbjct: 402 ANTTLVSLSVRRNGLSDAGATRLAASKTLTTLDAGDNAIKDAGARALAANRTLTTLDVSS 461
Query: 358 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
+I + G AL + T L LDL R+ ++G L
Sbjct: 462 NEIGNAGARALAANTRLASLDLRNNRMLEAGVRAL 496
>gi|87310922|ref|ZP_01093048.1| serine/threonine protein kinase [Blastopirellula marina DSM 3645]
gi|87286437|gb|EAQ78345.1| serine/threonine protein kinase [Blastopirellula marina DSM 3645]
Length = 897
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 93/201 (46%), Gaps = 2/201 (0%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
I +++++ + T+L L + S+ TD+ + + + L L +T A L L
Sbjct: 669 IKEAELQIFAETTHLTELALG-SEFTDAALQNFRHNKNLKTLYFLHSQITGAPLHDFD-L 726
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
L ++++ Q L L+L + DE L L GL+ L+ L+L
Sbjct: 727 SQLTHVDVRYSQFDGGNVIVLQNSPELIELHLTNTNVQDEDLALLTGLSKLQHLHLYDTR 786
Query: 288 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 347
I D GL + L +K L + T++ G+ HL+ L +LE +N S T ++D S+ LA L
Sbjct: 787 ISDAGLAQIGKLTKMKILSIDKTEITDKGIAHLTTLHDLEVLNASNTNLTDVSVNHLAQL 846
Query: 348 SSLKSLNLDARQITDTGLAAL 368
L+ L + QIT + L
Sbjct: 847 PRLQRLQVQGTQITRQAIEKL 867
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 79/159 (49%), Gaps = 4/159 (2%)
Query: 227 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 286
L +L++L+ Q++ F + L +++ +++ ++ L+ L L+L +
Sbjct: 706 LKTLYFLH---SQITGAPLHDFD-LSQLTHVDVRYSQFDGGNVIVLQNSPELIELHLTNT 761
Query: 287 GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG 346
+ DE L LTGL L+ L L DT++ +GL + LT ++ +++ T I+D + L
Sbjct: 762 NVQDEDLALLTGLSKLQHLHLYDTRISDAGLAQIGKLTKMKILSIDKTEITDKGIAHLTT 821
Query: 347 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
L L+ LN +TD + L L L L + G +IT
Sbjct: 822 LHDLEVLNASNTNLTDVSVNHLAQLPRLQRLQVQGTQIT 860
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 76/155 (49%), Gaps = 1/155 (0%)
Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
+ +D + F +LK L ++IT L H L+ L +++ ++ L
Sbjct: 690 SEFTDAALQNFRHNKNLKTLYFLHSQITGAPL-HDFDLSQLTHVDVRYSQFDGGNVIVLQ 748
Query: 298 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 357
L L L++T V L L+GL+ L+ ++L T ISD L ++ L+ +K L++D
Sbjct: 749 NSPELIELHLTNTNVQDEDLALLTGLSKLQHLHLYDTRISDAGLAQIGKLTKMKILSIDK 808
Query: 358 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
+ITD G+A LT+L L L+ +TD +L
Sbjct: 809 TEITDKGIAHLTTLHDLEVLNASNTNLTDVSVNHL 843
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 81/190 (42%), Gaps = 38/190 (20%)
Query: 66 GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN-----NAIT 120
GS+ TD+ L + + NL++L F QI+ L H LS LT + R + N I
Sbjct: 689 GSEFTDAALQNFRHNKNLKTLYF-LHSQITGAPL-HDFDLSQLTHVDVRYSQFDGGNVIV 746
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
Q L++L L L L GL KL+ L++ + I+D+ + + LT
Sbjct: 747 LQNSP------ELIELHLTNTNVQDEDLALLTGLSKLQHLHL-YDTRISDAGLAQIGKLT 799
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQ------------------------KLTLLNLEGCPV 216
+K L I +++TD GIA+L L +L L ++G +
Sbjct: 800 KMKILSIDKTEITDKGIAHLTTLHDLEVLNASNTNLTDVSVNHLAQLPRLQRLQVQGTQI 859
Query: 217 TAACLDSLSA 226
T ++ L A
Sbjct: 860 TRQAIEKLHA 869
>gi|357487843|ref|XP_003614209.1| Receptor-like protein kinase [Medicago truncatula]
gi|355515544|gb|AES97167.1| Receptor-like protein kinase [Medicago truncatula]
Length = 1078
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 91/337 (27%), Positives = 143/337 (42%), Gaps = 50/337 (14%)
Query: 47 KWMDVIASQGSSLLSVDLSGSDVT----DSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
KW V G + ++DLS ++ DS I NL FNF I + L++L
Sbjct: 67 KWHGVTCKDGH-VTALDLSQESISGGLNDSSAIFSLQGLNLAFNKFNFVIPQALHKLQNL 125
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
R L NL+ F Q K A L LV LDL L+ + +KLE+ NI
Sbjct: 126 RYL-NLSDAGFEE------QVPKEIAHLTRLVTLDL-------SSLITSRQNLKLENPNI 171
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
+ + LT++ L + ++ SG + + L L EG V
Sbjct: 172 EML----------VKNLTDITELYLDGVAISSSGDEWGRALSLL-----EGVRV------ 210
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282
L+++ C LS +K+ SL VL L N+++ + +NL L
Sbjct: 211 ----------LSMSSCNLSGPIDSSLAKLQSLSVLRLNNNKLSSKVPDSFANFSNLTILE 260
Query: 283 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 342
+ SCG+ + + LK L++SD Q S L S L +L+ +NL+ T S
Sbjct: 261 ISSCGLNGFFPKEIFQIHTLKVLDISDNQNLSGSLPDFSPLASLKYLNLADTNFSGPLPN 320
Query: 343 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
++ L L +++L Q T ++++ LT L +LDL
Sbjct: 321 TISNLKHLSTIDLSHCQFNGTLPSSMSELTQLVYLDL 357
>gi|421888174|ref|ZP_16319282.1| leucine-rich-repeat type III effector protein (GALA5) [Ralstonia
solanacearum K60-1]
gi|378966463|emb|CCF96030.1| leucine-rich-repeat type III effector protein (GALA5) [Ralstonia
solanacearum K60-1]
Length = 468
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 89/362 (24%), Positives = 157/362 (43%), Gaps = 19/362 (5%)
Query: 40 QYPGVNDKWMDVIASQGSSLLSVDLSGSDVTD-SGLIHLKDCSNLQSLD-FNFCIQISDG 97
+ P + + + ++ + + D+ VT+ +GL K N +L+ + +D
Sbjct: 8 RSPPLTVQRLRAVSKSVKAAVEADIRQLVVTNRAGLAGAKRTGNYPALEKLTLAVPFTDA 67
Query: 98 GLEHLRGLSNLTSLSFRR-NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMK 156
L+ L L L R ITA G+ A + LV+L+L +G + L G +
Sbjct: 68 DLKGL--PPTLKELDLSRCRGGITAAGI-AHLNRLPLVRLNL------NGNRIGLAGAQR 118
Query: 157 LE------SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
L +L++ C I + + L+ L +L +S +++ G+ L + LT L+
Sbjct: 119 LANHPTLTALDVGRCR-IGPEEARELAASARLTTLNVSRNRIGGEGVRALADCKTLTSLD 177
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
+ + A L A L LN+NR ++ G + +L L++G N I DE +
Sbjct: 178 VSENGLGDAEAQRLGASERLTTLNVNRNRIDVPGARALAACKTLTSLDIGGNSIGDEGVD 237
Query: 271 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 330
L L +LN++ G+G G+ L L L + +G G L+ +L +++
Sbjct: 238 ALVANAQLTTLNVERAGVGAHGVQALADCKTLTSLRIDSNNIGDEGANTLAASISLTTLH 297
Query: 331 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 390
GI + LA + L +LNL + D G AL + T L L + ++D+GA
Sbjct: 298 SEGNGIGLAGAKALAANTMLTTLNLGHNSVGDAGAQALFANTTLVWLSVRRNGLSDAGAI 357
Query: 391 YL 392
L
Sbjct: 358 RL 359
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 88/335 (26%), Positives = 144/335 (42%), Gaps = 3/335 (0%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
L+ ++L+G+ + +G L + L +LD C +I L + LT+L+ RN
Sbjct: 100 PLVRLNLNGNRIGLAGAQRLANHPTLTALDVGRC-RIGPEEARELAASARLTTLNVSRNR 158
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
I +G++A A L LD+ L +L +LN+ N I + L+
Sbjct: 159 -IGGEGVRALADCKTLTSLDVSENGLGDAEAQRLGASERLTTLNVNR-NRIDVPGARALA 216
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
L SL I + + D G+ L +LT LN+E V A + +L+ +L L ++
Sbjct: 217 ACKTLTSLDIGGNSIGDEGVDALVANAQLTTLNVERAGVGAHGVQALADCKTLTSLRIDS 276
Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
+ D+G + SL L+ N I L T L +LNL +GD G L
Sbjct: 277 NNIGDEGANTLAASISLTTLHSEGNGIGLAGAKALAANTMLTTLNLGHNSVGDAGAQALF 336
Query: 298 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 357
L L + + +G L+ L ++++ I D R LA +L +LN+ +
Sbjct: 337 ANTTLVWLSVRRNGLSDAGAIRLAASRTLTTLDIGDNAIKDAGARALAANRTLTTLNVSS 396
Query: 358 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
+I + G AL + L LDL R+ + G L
Sbjct: 397 NEIGNAGARALAANARLKSLDLRNNRMLEGGVRAL 431
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 78/301 (25%), Positives = 128/301 (42%), Gaps = 27/301 (8%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+ L ++++S + + G+ L DC L SLD + + D + L LT+L+ RN
Sbjct: 147 ARLTTLNVSRNRIGGEGVRALADCKTLTSLDVSEN-GLGDAEAQRLGASERLTTLNVNRN 205
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
I G +A A L LD+ + G+ L +L +LN++ + ++ L
Sbjct: 206 R-IDVPGARALAACKTLTSLDIGGNSIGDEGVDALVANAQLTTLNVERAG-VGAHGVQAL 263
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA------------------ 218
+ L SL+I + + D G L LT L+ EG +
Sbjct: 264 ADCKTLTSLRIDSNNIGDEGANTLAASISLTTLHSEGNGIGLAGAKALAANTMLTTLNLG 323
Query: 219 ------ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
A +L A +L +L++ R LSD G + + +L L++G N I D L
Sbjct: 324 HNSVGDAGAQALFANTTLVWLSVRRNGLSDAGAIRLAASRTLTTLDIGDNAIKDAGARAL 383
Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 332
L +LN+ S IG+ G L LK L+L + ++ G+R L L S+ +S
Sbjct: 384 AANRTLTTLNVSSNEIGNAGARALAANARLKSLDLRNNRMLEGGVRALLANRTLSSLGVS 443
Query: 333 F 333
F
Sbjct: 444 F 444
>gi|315280691|ref|ZP_07869526.1| internalin A [Listeria marthii FSL S4-120]
gi|313615662|gb|EFR88972.1| internalin A [Listeria marthii FSL S4-120]
Length = 478
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 128/253 (50%), Gaps = 26/253 (10%)
Query: 120 TAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG---LMKLESLNIKWCNCITDSDMKPL 176
T G + L++ +LD R + + +++G L L LNI SD+K L
Sbjct: 37 TKLGKASVTDLVSQSELDALTQLRTYLPIESIEGIQYLTNLTELNISNTEVSDISDLKDL 96
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT+L+ Q + + D+ + L+ L LT L+L +T + ++ L +L +LNL
Sbjct: 97 TKLTDLEMYQ---NNIVDTSV--LENLTNLTDLDLHDNKITD--ISAVRNLTNLVHLNLA 149
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGF---NEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
Q+SD S + +L LN+ + N+I+D + + LTN+ SL+LD I D G
Sbjct: 150 YNQISD-----ISAVSALSKLNMVWFTENQISD--ISPVANLTNITSLSLDYNQISDIGA 202
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
LT L NL L + + Q+ S + L+ LTNL+ + L ISD L +A L++L +
Sbjct: 203 --LTNLTNLDGLGIDNNQI--SDISPLANLTNLDYVGLHNNQISD--LTPIANLTNLTRM 256
Query: 354 NLDARQITDTGLA 366
L +QIT+ L
Sbjct: 257 YLSGQQITNKPLP 269
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 65/204 (31%), Positives = 97/204 (47%), Gaps = 43/204 (21%)
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL-EGCPVTAACLDSLSALGSLFYLNLNR 237
LTNL L IS ++V+D I+ LK L KLT L + + V + L++L+ NL
Sbjct: 74 LTNLTELNISNTEVSD--ISDLKDLTKLTDLEMYQNNIVDTSVLENLT--------NLTD 123
Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
L D N+ITD V + LTNL LNL I D V +
Sbjct: 124 LDLHD-------------------NKITDISAV--RNLTNLVHLNLAYNQISDISAV--S 160
Query: 298 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 357
L L + ++ Q+ S + ++ LTN+ S++L + ISD + L L++L L +D
Sbjct: 161 ALSKLNMVWFTENQI--SDISPVANLTNITSLSLDYNQISD--IGALTNLTNLDGLGIDN 216
Query: 358 RQITDTGLAALTSLTGLTHLDLFG 381
QI+D ++ L LT+LD G
Sbjct: 217 NQISD-----ISPLANLTNLDYVG 235
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 108/218 (49%), Gaps = 25/218 (11%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L +++S ++V+D + LKD + L L+ + I D + L L+NLT L +
Sbjct: 75 TNLTELNISNTEVSD--ISDLKDLTKLTDLEM-YQNNIVDTSV--LENLTNLTDLDLH-D 128
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + A L NLV L+L + + ++ + L LN+ W SD+ P+
Sbjct: 129 NKIT--DISAVRNLTNLVHLNLA-----YNQISDISAVSALSKLNMVWFTENQISDISPV 181
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF---YL 233
+ LTN+ SL + ++++D G L LT NL+G + + +S L +L Y+
Sbjct: 182 ANLTNITSLSLDYNQISDIG-----ALTNLT--NLDGLGIDNNQISDISPLANLTNLDYV 234
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 271
L+ Q+SD + + +L + L +IT++ L +
Sbjct: 235 GLHNNQISD--LTPIANLTNLTRMYLSGQQITNKPLPY 270
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 90/191 (47%), Gaps = 37/191 (19%)
Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 275
V+ + LD+L+ L R L + E + +L LN+ E++D + LK L
Sbjct: 48 VSQSELDALTQL---------RTYLPIESIEGIQYLTNLTELNISNTEVSD--ISDLKDL 96
Query: 276 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 335
T L L + I D + L L NL L+L D ++ + + + LTNL +NL++
Sbjct: 97 TKLTDLEMYQNNIVDTSV--LENLTNLTDLDLHDNKI--TDISAVRNLTNLVHLNLAYNQ 152
Query: 336 ISDGS--------------------LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 375
ISD S + +A L+++ SL+LD QI+D G ALT+LT L
Sbjct: 153 ISDISAVSALSKLNMVWFTENQISDISPVANLTNITSLSLDYNQISDIG--ALTNLTNLD 210
Query: 376 HLDLFGARITD 386
L + +I+D
Sbjct: 211 GLGIDNNQISD 221
Score = 42.4 bits (98), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 59/107 (55%), Gaps = 8/107 (7%)
Query: 291 EGLVNLTGLCNLKCLELSDTQVGS-SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 349
E + + L NL L +S+T+V S L+ L+ LT+LE + I D S+ L L++
Sbjct: 66 ESIEGIQYLTNLTELNISNTEVSDISDLKDLTKLTDLE---MYQNNIVDTSV--LENLTN 120
Query: 350 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRSKF 396
L L+L +ITD ++A+ +LT L HL+L +I+D A SK
Sbjct: 121 LTDLDLHDNKITD--ISAVRNLTNLVHLNLAYNQISDISAVSALSKL 165
>gi|320169649|gb|EFW46548.1| non-receptor protein kinase, partial [Capsaspora owczarzaki ATCC
30864]
Length = 1380
Score = 69.7 bits (169), Expect = 2e-09, Method: Composition-based stats.
Identities = 50/158 (31%), Positives = 79/158 (50%)
Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 281
D+L+ L +L YL+LN +++ F+ + +L VL L +NE+ L GLT L+ L
Sbjct: 13 DALTGLTALQYLSLNNNRITRISANAFTGLTALTVLYLSYNELPSISANALAGLTALQYL 72
Query: 282 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 341
+L++ I GL L L L + Q+ S +GL+ L+ ++L+ I+ +
Sbjct: 73 SLNNNQITSIAAAAFAGLTALTHLPLDNNQITSISAEAFTGLSALQLLSLNSNQITSIAA 132
Query: 342 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
GL++L SL L+ I A T LT LT L L
Sbjct: 133 NAFTGLNALTSLYLNQNNIAGISANAFTGLTKLTQLYL 170
Score = 58.9 bits (141), Expect = 4e-06, Method: Composition-based stats.
Identities = 55/193 (28%), Positives = 83/193 (43%), Gaps = 3/193 (1%)
Query: 185 LQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 244
+Q S ++ + L LQ L+L N ++A L+AL ++ YL+ N +L
Sbjct: 3 VQNQLSSISADALTGLTALQYLSLNNNRITRISANAFTGLTAL-TVLYLSYN--ELPSIS 59
Query: 245 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 304
+ + +L+ L+L N+IT GLT L L LD+ I TGL L+
Sbjct: 60 ANALAGLTALQYLSLNNNQITSIAAAAFAGLTALTHLPLDNNQITSISAEAFTGLSALQL 119
Query: 305 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 364
L L+ Q+ S +GL L S+ L+ I+ S GL+ L L LD T
Sbjct: 120 LSLNSNQITSIAANAFTGLNALTSLYLNQNNIAGISANAFTGLTKLTQLYLDDNPFTTLP 179
Query: 365 LAALTSLTGLTHL 377
L L +L
Sbjct: 180 PGLFKGLPKLLYL 192
Score = 53.1 bits (126), Expect = 3e-04, Method: Composition-based stats.
Identities = 36/94 (38%), Positives = 51/94 (54%)
Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355
LTGL L+ L L++ ++ +GLT L + LS+ + S LAGL++L+ L+L
Sbjct: 15 LTGLTALQYLSLNNNRITRISANAFTGLTALTVLYLSYNELPSISANALAGLTALQYLSL 74
Query: 356 DARQITDTGLAALTSLTGLTHLDLFGARITDSGA 389
+ QIT AA LT LTHL L +IT A
Sbjct: 75 NNNQITSIAAAAFAGLTALTHLPLDNNQITSISA 108
Score = 52.4 bits (124), Expect = 4e-04, Method: Composition-based stats.
Identities = 42/118 (35%), Positives = 59/118 (50%)
Query: 272 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 331
L GLT L+ L+L++ I TGL L L LS ++ S L+GLT L+ ++L
Sbjct: 15 LTGLTALQYLSLNNNRITRISANAFTGLTALTVLYLSYNELPSISANALAGLTALQYLSL 74
Query: 332 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 389
+ I+ + AGL++L L LD QIT A T L+ L L L +IT A
Sbjct: 75 NNNQITSIAAAAFAGLTALTHLPLDNNQITSISAEAFTGLSALQLLSLNSNQITSIAA 132
Score = 38.1 bits (87), Expect = 7.2, Method: Composition-based stats.
Identities = 43/132 (32%), Positives = 55/132 (41%), Gaps = 2/132 (1%)
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
L GL+ L LS NN IT+ AFAGL L L L+ GL L+ L+
Sbjct: 63 LAGLTALQYLSLN-NNQITSIAAAAFAGLTALTHLPLDNNQITSISAEAFTGLSALQLLS 121
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 221
+ N IT +GL L SL ++ + + GL KLT L L+ P T
Sbjct: 122 LN-SNQITSIAANAFTGLNALTSLYLNQNNIAGISANAFTGLTKLTQLYLDDNPFTTLPP 180
Query: 222 DSLSALGSLFYL 233
L L YL
Sbjct: 181 GLFKGLPKLLYL 192
>gi|119485475|ref|ZP_01619803.1| Rab family protein [Lyngbya sp. PCC 8106]
gi|119457231|gb|EAW38357.1| Rab family protein [Lyngbya sp. PCC 8106]
Length = 457
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 96/282 (34%), Positives = 144/282 (51%), Gaps = 40/282 (14%)
Query: 126 AFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
A L+ +++LDL R ++I L L L L LN+ N ITD + PLS LTNL L
Sbjct: 94 AQKSLLQVIELDLSR-SKI-SDLSPLITLPHLTRLNLSE-NQITD--LTPLSNLTNLTRL 148
Query: 186 QISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 244
+S + + D S I+ L LQ L L E L LS L L L+L+ ++SD
Sbjct: 149 NLSSNLIQDLSPISELPNLQILLLYKNE-----IEVLSPLSNLSGLTELSLDSNKISD-- 201
Query: 245 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV----NLTGLC 300
S++ +L L+L N+I D ++ L NL L+L+ + D L+ NLT L
Sbjct: 202 ISSLSELNNLTNLSLSENQIQDLSIIA--NLENLTQLSLNGNKVNDISLISELQNLTKL- 258
Query: 301 NLKCLELSDT------------QVGSSGL---RHLSGLTNLESINLSFTGISDGSLRKLA 345
NLK ++ D + S+ L LS LT LE+++LS I++ ++ L+
Sbjct: 259 NLKTNQIEDLSSLSNLSNLKELNLDSNKLIDVSALSSLTQLETLSLSENNITN--IQPLS 316
Query: 346 GLSSLKSLNLDARQITDTGLAALTSLTGLTH-LDLFGARITD 386
L +L +L L + QI+D + AL+SLT LT L+L +I+D
Sbjct: 317 NLENLITLQLRSNQISD--IKALSSLTNLTEDLNLIDNQISD 356
Score = 45.8 bits (107), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 91/194 (46%), Gaps = 23/194 (11%)
Query: 85 SLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI 144
+LD N I +S L L+ L +LS NN Q + L NL+ L L R +I
Sbjct: 281 NLDSNKLIDVS-----ALSSLTQLETLSLSENNITNIQ---PLSNLENLITLQL-RSNQI 331
Query: 145 HGGLVNLKGLMKLESLNIKWCNCITD--SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKG 202
++K L L +L + N I + SD+KPLS L NL + +S ++++D + L
Sbjct: 332 S----DIKALSSLTNL-TEDLNLIDNQISDIKPLSNLKNLSRVGLSKNQISD--LKPLSD 384
Query: 203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 262
L KL +L L+ +T LS L +L LNL Q+ E S + +L L L N
Sbjct: 385 LSKLVILYLDENKITEV--QPLSNLTNLTELNLWNNQIK--TIESLSTLDNLTYLGLQEN 440
Query: 263 EI-TDECLVHLKGL 275
I EC V K +
Sbjct: 441 PIEKKECPVQPKSI 454
>gi|47209853|emb|CAG12236.1| unnamed protein product [Tetraodon nigroviridis]
Length = 321
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 72/214 (33%), Positives = 110/214 (51%), Gaps = 25/214 (11%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + G ++ + L
Sbjct: 68 RGIRRVQILSLRRSLSYVIQGMP------NIESLNLSGCYNLTDNGLGHAFVQEIPSLRV 121
Query: 160 LNIKWCNCITDSDMKPLSG-LTNLKSLQIS-CSKVTDSGIAYLK-GLQKLTLLNLEGCPV 216
LN+ C ITDS + ++ L NL+ L++ CS +T++G+ + GL +L LNL C
Sbjct: 122 LNLSLCKQITDSSLGRIAQYLKNLEVLELGGCSNITNTGLLLIAWGLHRLKSLNLRSCRH 181
Query: 217 TA-------ACLDSLSALG--SLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-NEI 264
+ A + +A G +L YL L CQ L+D + SK + L+VLNL F I
Sbjct: 182 VSDVGIGHLAGMTRSAAEGCLNLEYLTLQDCQKLTDLSLKHISKGLTKLRVLNLSFCGGI 241
Query: 265 TDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT 297
+D ++HL +T+L SLNL SC I D G ++L
Sbjct: 242 SDAGMIHLSHMTSLWSLNLRSCDNISDTGTMHLA 275
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 92/177 (51%), Gaps = 23/177 (12%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEH 101
+ D + IA +L ++L G S++T++GL+ + L+SL+ C +SD G+ H
Sbjct: 130 ITDSSLGRIAQYLKNLEVLELGGCSNITNTGLLLIAWGLHRLKSLNLRSCRHVSDVGIGH 189
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNL-KGLMKLES 159
L G++ A G +NL L L+ C ++ L ++ KGL KL
Sbjct: 190 LAGMTR-----------------SAAEGCLNLEYLTLQDCQKLTDLSLKHISKGLTKLRV 232
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LN+ +C I+D+ M LS +T+L SL + SC ++D+G +L G +L+ L++ C
Sbjct: 233 LNLSFCGGISDAGMIHLSHMTSLWSLNLRSCDNISDTGTMHLAMGTLRLSGLDVSFC 289
>gi|407399627|gb|EKF28370.1| leucine-rich repeat protein (LRRP), putative [Trypanosoma cruzi
marinkellei]
Length = 438
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 106/217 (48%), Gaps = 9/217 (4%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S SL S+DLS + VTD GL+ L C L+ +D + C I L ++ + L L
Sbjct: 189 SHLHSLKSLDLSRTGVTDDGLLALNACHLLEEVDLSGCAFIC--ALPFMKSMGCLRVLKL 246
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
RN+ IT + + A LV LD+ C + L L GL +LE +N WC + D +
Sbjct: 247 -RNSGITDRAISAIGAATALVHLDIAGCFLV-TSLNPLGGLKRLEWMNTSWCG-VRDGGV 303
Query: 174 KPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
+ LS NL+ L ++ C + + + L L KL +L+L G V + LS SL
Sbjct: 304 EGLSCCDNLEYLSMARCWDIKN--VNALGVLSKLQILDLCGTNVDDEGIAGLSHSASLCS 361
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
LNL+ C + + SLK +++ + +T+E L
Sbjct: 362 LNLSDC-FCICSVRALAAMPSLKEMDVSYTAVTEESL 397
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 74/247 (29%), Positives = 110/247 (44%), Gaps = 30/247 (12%)
Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 207
L L LE L ++ C +T ++ LS L +LKSL +S + VTD G+ L L
Sbjct: 162 LSPLASCATLEHLWLRSCRSLTR--VEALSHLHSLKSLDLSRTGVTDDGLLALNACHLLE 219
Query: 208 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL-GFNEITD 266
++L GC A L + ++G L L L ++D +L L++ G +T
Sbjct: 220 EVDLSGCAFICA-LPFMKSMGCLRVLKLRNSGITDRAISAIGAATALVHLDIAGCFLVTS 278
Query: 267 ECLVHLKGLTNLESLNLDSCGIGDEGL----------------------VNLTG-LCNLK 303
L L GL LE +N CG+ D G+ VN G L L+
Sbjct: 279 --LNPLGGLKRLEWMNTSWCGVRDGGVEGLSCCDNLEYLSMARCWDIKNVNALGVLSKLQ 336
Query: 304 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 363
L+L T V G+ LS +L S+NLS S+R LA + SLK +++ +T+
Sbjct: 337 ILDLCGTNVDDEGIAGLSHSASLCSLNLS-DCFCICSVRALAAMPSLKEMDVSYTAVTEE 395
Query: 364 GLAALTS 370
L+ L S
Sbjct: 396 SLSLLPS 402
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 70/271 (25%), Positives = 131/271 (48%), Gaps = 14/271 (5%)
Query: 77 LKDCSNLQSLDFNFCIQISDG-----GLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLI 131
++D ++++ L C+ I + L L + L L R ++T ++A + L
Sbjct: 135 IEDLTDVKDLRGLRCLFIPEAILLNKTLSPLASCATLEHLWLRSCRSLTR--VEALSHLH 192
Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 191
+L LDL R GL+ L LE +++ C I + + + L+ L++ S
Sbjct: 193 SLKSLDLSRTGVTDDGLLALNACHLLEEVDLSGCAFIC--ALPFMKSMGCLRVLKLRNSG 250
Query: 192 VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI 251
+TD I+ + L L++ GC + + L+ L L L ++N + C + D G E S
Sbjct: 251 ITDRAISAIGAATALVHLDIAGCFLVTS-LNPLGGLKRLEWMNTSWCGVRDGGVEGLSCC 309
Query: 252 GSLKVLNLGFNEITDECLVHLKG-LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 310
+L+ L++ D V+ G L+ L+ L+L + DEG+ L+ +L L LSD
Sbjct: 310 DNLEYLSMA--RCWDIKNVNALGVLSKLQILDLCGTNVDDEGIAGLSHSASLCSLNLSDC 367
Query: 311 QVGSSGLRHLSGLTNLESINLSFTGISDGSL 341
S +R L+ + +L+ +++S+T +++ SL
Sbjct: 368 FCICS-VRALAAMPSLKEMDVSYTAVTEESL 397
Score = 38.1 bits (87), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 2/122 (1%)
Query: 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 325
++ L L LE L L SC + L+ L +LK L+LS T V GL L+
Sbjct: 159 NKTLSPLASCATLEHLWLRSCR-SLTRVEALSHLHSLKSLDLSRTGVTDDGLLALNACHL 217
Query: 326 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
LE ++LS +L + + L+ L L ITD ++A+ + T L HLD+ G +
Sbjct: 218 LEEVDLSGCAFI-CALPFMKSMGCLRVLKLRNSGITDRAISAIGAATALVHLDIAGCFLV 276
Query: 386 DS 387
S
Sbjct: 277 TS 278
>gi|320168689|gb|EFW45588.1| tyrosine-protein kinase transforming protein Src [Capsaspora
owczarzaki ATCC 30864]
Length = 1510
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 97/220 (44%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
N IT L+GLT L SL +S +++T L LT+L+L + + + +
Sbjct: 389 NQITSISENALTGLTALTSLDLSANQITSISENAFASLTALTVLDLSNNQIASISATAFA 448
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
L +L L LN Q + + + +L L + +N+IT+ L GL L LN+ +
Sbjct: 449 GLTALTGLGLNINQFTSIPTSALTGLTALTFLRIDYNQITNISANALAGLNALTFLNMAN 508
Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 345
+ T L L L L D Q+ S +GLT L + L I+ S +
Sbjct: 509 NQLRSIPSSAFTSLTALTVLNLGDNQLRSVPSSAFTGLTTLMGLGLHNNQITSISASEFT 568
Query: 346 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
L++L L+L QIT A T LT LT L L G T
Sbjct: 569 SLTALTQLHLHNNQITSISANAFTGLTALTRLTLDGNPFT 608
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 69/237 (29%), Positives = 104/237 (43%), Gaps = 10/237 (4%)
Query: 109 TSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCTRI-HGGLVNLKGLMKLESLNIKWC 165
T++ + ++N IT+ A GL L LDL + T I +L L L+ N
Sbjct: 381 TTILYLQSNQITSISENALTGLTALTSLDLSANQITSISENAFASLTALTVLDLSN---- 436
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
N I +GLT L L ++ ++ T + L GL LT L ++ +T ++L+
Sbjct: 437 NQIASISATAFAGLTALTGLGLNINQFTSIPTSALTGLTALTFLRIDYNQITNISANALA 496
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
L +L +LN+ QL F+ + +L VLNLG N++ GLT L L L +
Sbjct: 497 GLNALTFLNMANNQLRSIPSSAFTSLTALTVLNLGDNQLRSVPSSAFTGLTTLMGLGLHN 556
Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL---SFTGISDG 339
I T L L L L + Q+ S +GLT L + L FT + G
Sbjct: 557 NQITSISASEFTSLTALTQLHLHNNQITSISANAFTGLTALTRLTLDGNPFTTLPPG 613
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 94/209 (44%)
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
N L + +++T L GL LT L+L +T+ ++ ++L +L L+L+ Q+
Sbjct: 380 NTTILYLQSNQITSISENALTGLTALTSLDLSANQITSISENAFASLTALTVLDLSNNQI 439
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
+ F+ + +L L L N+ T L GLT L L +D I + L GL
Sbjct: 440 ASISATAFAGLTALTGLGLNINQFTSIPTSALTGLTALTFLRIDYNQITNISANALAGLN 499
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
L L +++ Q+ S + LT L +NL + GL++L L L QI
Sbjct: 500 ALTFLNMANNQLRSIPSSAFTSLTALTVLNLGDNQLRSVPSSAFTGLTTLMGLGLHNNQI 559
Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGA 389
T + TSLT LT L L +IT A
Sbjct: 560 TSISASEFTSLTALTQLHLHNNQITSISA 588
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 92/199 (46%)
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
N L ++ +++T L GL LT L L+ +T+ ++ + L +L L+L+ Q+
Sbjct: 763 NTTILYLNLNQITSISANALTGLTALTWLYLQSNQITSISANAFTGLAALNRLDLSSNQI 822
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
+ F+ + +L + L N+ T L GL L+S++L + I GL
Sbjct: 823 ASISANVFAGLSALTGVVLSGNQFTSMPTSALAGLPMLKSVSLSNNQITSIPATAFAGLT 882
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
L + L+ Q+ S +GLT L + L I+ S AGLS+L L+L QI
Sbjct: 883 ALIGVNLAGNQLRSIPTSAFTGLTALIQLVLPNNQITSISANAFAGLSALTLLHLYNNQI 942
Query: 361 TDTGLAALTSLTGLTHLDL 379
T A + LT +T L L
Sbjct: 943 TSISANAFSGLTAMTALAL 961
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 89/198 (44%), Gaps = 14/198 (7%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER------CTRIHG 146
QI+ L GL+ LT L + ++N IT+ AF GL L +LDL +
Sbjct: 773 QITSISANALTGLTALTWL-YLQSNQITSISANAFTGLAALNRLDLSSNQIASISANVFA 831
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
GL L G+ + N T L+GL LKS+ +S +++T GL L
Sbjct: 832 GLSALTGV-------VLSGNQFTSMPTSALAGLPMLKSVSLSNNQITSIPATAFAGLTAL 884
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 266
+NL G + + + + L +L L L Q++ F+ + +L +L+L N+IT
Sbjct: 885 IGVNLAGNQLRSIPTSAFTGLTALIQLVLPNNQITSISANAFAGLSALTLLHLYNNQITS 944
Query: 267 ECLVHLKGLTNLESLNLD 284
GLT + +L L+
Sbjct: 945 ISANAFSGLTAMTALALN 962
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 81/183 (44%)
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 266
T+L L +T+ ++L+ L +L +L L Q++ F+ + +L L+L N+I
Sbjct: 765 TILYLNLNQITSISANALTGLTALTWLYLQSNQITSISANAFTGLAALNRLDLSSNQIAS 824
Query: 267 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 326
GL+ L + L L GL LK + LS+ Q+ S +GLT L
Sbjct: 825 ISANVFAGLSALTGVVLSGNQFTSMPTSALAGLPMLKSVSLSNNQITSIPATAFAGLTAL 884
Query: 327 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
+NL+ + GL++L L L QIT A L+ LT L L+ +IT
Sbjct: 885 IGVNLAGNQLRSIPTSAFTGLTALIQLVLPNNQITSISANAFAGLSALTLLHLYNNQITS 944
Query: 387 SGA 389
A
Sbjct: 945 ISA 947
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 80/176 (45%), Gaps = 3/176 (1%)
Query: 187 ISCSKVTDSGIAYLKGLQ-KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 245
+ CS T S I G+ T L+L+G +T+ D+ + L +L YL L Q++
Sbjct: 40 VDCSYRTLSAIP--SGIPVTTTQLSLQGNQLTSISADAFTGLTALSYLYLQTNQITSISA 97
Query: 246 EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 305
F+ + +L VL L N +T + LT L+ L L S + LTGL L L
Sbjct: 98 STFTTLSALTVLYLNNNLMTSIPVNAFANLTALKYLYLSSNLLTSISAAALTGLSALTQL 157
Query: 306 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 361
L + Q+ S + GLT L + L I++ S GL++L L LD T
Sbjct: 158 YLLNNQITSIPTQAFPGLTALTYLALDNNQIANISANAFTGLTALTRLALDGNPFT 213
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 61/234 (26%), Positives = 98/234 (41%), Gaps = 14/234 (5%)
Query: 133 LVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKV 192
++ L+L + T I L GL L L ++ N IT +GL L L +S +++
Sbjct: 766 ILYLNLNQITSISANA--LTGLTALTWLYLQ-SNQITSISANAFTGLAALNRLDLSSNQI 822
Query: 193 TDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG 252
GL LT + L G T+ +L+ L L ++L+ Q++ F+ +
Sbjct: 823 ASISANVFAGLSALTGVVLSGNQFTSMPTSALAGLPMLKSVSLSNNQITSIPATAFAGLT 882
Query: 253 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 312
+L +NL N++ GLT L L L + I GL L L L + Q+
Sbjct: 883 ALIGVNLAGNQLRSIPTSAFTGLTALIQLVLPNNQITSISANAFAGLSALTLLHLYNNQI 942
Query: 313 GSSGLRHLSGLTNLESINLS-----------FTGISDGSLRKLAGLSSLKSLNL 355
S SGLT + ++ L+ FTG+ +G L+ SL+ N
Sbjct: 943 TSISANAFSGLTAMTALALNDNPLTTLPPGLFTGLQNGMYLALSVSYSLRPNNF 996
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 85/196 (43%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
N IT L+GLT L L + +++T GL L L+L + + + +
Sbjct: 772 NQITSISANALTGLTALTWLYLQSNQITSISANAFTGLAALNRLDLSSNQIASISANVFA 831
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
L +L + L+ Q + + + LK ++L N+IT GLT L +NL
Sbjct: 832 GLSALTGVVLSGNQFTSMPTSALAGLPMLKSVSLSNNQITSIPATAFAGLTALIGVNLAG 891
Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 345
+ TGL L L L + Q+ S +GL+ L ++L I+ S +
Sbjct: 892 NQLRSIPTSAFTGLTALIQLVLPNNQITSISANAFAGLSALTLLHLYNNQITSISANAFS 951
Query: 346 GLSSLKSLNLDARQIT 361
GL+++ +L L+ +T
Sbjct: 952 GLTAMTALALNDNPLT 967
Score = 39.7 bits (91), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 59/133 (44%)
Query: 257 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 316
L+L N++T GLT L L L + I T L L L L++ + S
Sbjct: 61 LSLQGNQLTSISADAFTGLTALSYLYLQTNQITSISASTFTTLSALTVLYLNNNLMTSIP 120
Query: 317 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 376
+ + LT L+ + LS ++ S L GLS+L L L QIT A LT LT+
Sbjct: 121 VNAFANLTALKYLYLSSNLLTSISAAALTGLSALTQLYLLNNQITSIPTQAFPGLTALTY 180
Query: 377 LDLFGARITDSGA 389
L L +I + A
Sbjct: 181 LALDNNQIANISA 193
Score = 39.3 bits (90), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 63/142 (44%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
N +T +GLT L L + +++T + L LT+L L +T+ +++ +
Sbjct: 66 NQLTSISADAFTGLTALSYLYLQTNQITSISASTFTTLSALTVLYLNNNLMTSIPVNAFA 125
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
L +L YL L+ L+ + + +L L L N+IT GLT L L LD+
Sbjct: 126 NLTALKYLYLSSNLLTSISAAALTGLSALTQLYLLNNQITSIPTQAFPGLTALTYLALDN 185
Query: 286 CGIGDEGLVNLTGLCNLKCLEL 307
I + TGL L L L
Sbjct: 186 NQIANISANAFTGLTALTRLAL 207
>gi|290992226|ref|XP_002678735.1| predicted protein [Naegleria gruberi]
gi|284092349|gb|EFC45991.1| predicted protein [Naegleria gruberi]
Length = 445
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 91/341 (26%), Positives = 140/341 (41%), Gaps = 59/341 (17%)
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW 164
L L SL ++ + G K L L KLD+ T G + + +L LNI +
Sbjct: 88 LEQLKSLEISSDHKVGYDGAKVIGQLKQLTKLDISFNTIGAEGAKFIGEMQQLTYLNI-Y 146
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTD--------SGIAYLKGLQKLTLLNLEGCPV 216
N +T ++ +S LTNL L + ++ G YL+ LQKLT L++ +
Sbjct: 147 GNSLTSEGIRFISQLTNLTYLNVRFNEDFRFGGHDKGLEGAQYLRNLQKLTSLDIGYNQI 206
Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH---LK 273
+ + SL L + L +G SK+ +L++L++ N I DE +VH LK
Sbjct: 207 GNDGAKFIGEIQSLTELTIRNNNLKAEGVRWLSKLKNLRLLSINNNHIKDEGVVHICKLK 266
Query: 274 GLTNLE---------------------------------------------SLNLDSCGI 288
LT+L+ +L D +
Sbjct: 267 QLTHLDLWNTEITAEGIELVSKQLPKVTHLHISINVIRDGTKFLGEMKQLTTLEADEIEL 326
Query: 289 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 348
EGL L GL L L +++ G+ G + +S + LE + ++ I D ++ L L
Sbjct: 327 DAEGLKYLVGLKKLNFLSVNNNLFGAEGCKVVSEMKQLEELCMNDNNIGDNGVQYLCELK 386
Query: 349 SLKSLNLDARQITDTGLAALTS--LTGLTHLDLFGARITDS 387
SL SL L I G+ L S L LT LD+ G +IT S
Sbjct: 387 SLTSLCLWNNNIGIEGVKLLCSGNLNNLTTLDIRGNQITKS 427
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 73/284 (25%), Positives = 125/284 (44%), Gaps = 38/284 (13%)
Query: 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG 196
D + T N+ L +L+SL I + + K + L L L IS + + G
Sbjct: 71 DNTKITEFTKWAANIAQLEQLKSLEISSDHKVGYDGAKVIGQLKQLTKLDISFNTIGAEG 130
Query: 197 IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN-------------------- 236
++ +Q+LT LN+ G +T+ + +S L +L YLN+
Sbjct: 131 AKFIGEMQQLTYLNIYGNSLTSEGIRFISQLTNLTYLNVRFNEDFRFGGHDKGLEGAQYL 190
Query: 237 ------------RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284
Q+ +DG + +I SL L + N + E + L L NL L+++
Sbjct: 191 RNLQKLTSLDIGYNQIGNDGAKFIGEIQSLTELTIRNNNLKAEGVRWLSKLKNLRLLSIN 250
Query: 285 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG-LTNLESINLSFTGISDGSLRK 343
+ I DEG+V++ L L L+L +T++ + G+ +S L + +++S I DG+ +
Sbjct: 251 NNHIKDEGVVHICKLKQLTHLDLWNTEITAEGIELVSKQLPKVTHLHISINVIRDGT-KF 309
Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL----DLFGAR 383
L + L +L D ++ GL L L L L +LFGA
Sbjct: 310 LGEMKQLTTLEADEIELDAEGLKYLVGLKKLNFLSVNNNLFGAE 353
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 62/243 (25%), Positives = 104/243 (42%), Gaps = 33/243 (13%)
Query: 163 KWCNCITDSDMKP----------------LSGLTNLKSLQISC-SKVTDSGIAYLKGLQK 205
K+ NC+TD + ++ L LKSL+IS KV G + L++
Sbjct: 56 KFKNCVTDLKLTHTADNTKITEFTKWAANIAQLEQLKSLEISSDHKVGYDGAKVIGQLKQ 115
Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265
LT L++ + A + + L YLN+ L+ +G S++ +L LN+ FNE
Sbjct: 116 LTKLDISFNTIGAEGAKFIGEMQQLTYLNIYGNSLTSEGIRFISQLTNLTYLNVRFNE-- 173
Query: 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 325
G EG L L L L++ Q+G+ G + + + +
Sbjct: 174 --------------DFRFGGHDKGLEGAQYLRNLQKLTSLDIGYNQIGNDGAKFIGEIQS 219
Query: 326 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
L + + + +R L+ L +L+ L+++ I D G+ + L LTHLDL+ IT
Sbjct: 220 LTELTIRNNNLKAEGVRWLSKLKNLRLLSINNNHIKDEGVVHICKLKQLTHLDLWNTEIT 279
Query: 386 DSG 388
G
Sbjct: 280 AEG 282
>gi|405952059|gb|EKC19912.1| F-box/LRR-repeat protein 13 [Crassostrea gigas]
Length = 834
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 113/425 (26%), Positives = 194/425 (45%), Gaps = 50/425 (11%)
Query: 20 LTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHL- 77
L + A +C LQDL L + G++D+ + ++ +L ++LS + +TD+ L +
Sbjct: 365 LHSATFTALSECRNLQDLNLSECKGLDDESLKLVVKGCKIILYLNLSHTHITDASLRTIS 424
Query: 78 KDCSNLQSLDFNFCIQISDGGLEHL---RGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134
K C N+Q L +C + SD GL++L + L L IT G K+ + ++
Sbjct: 425 KYCHNVQFLSLAYCKKFSDRGLQYLSAGKCSKKLEYLDLSGCLQITPDGFKSLSAGCTML 484
Query: 135 KLDL----------------ERCTRIHG------------GLVNLKGLMKLESLNIKWCN 166
++ + +CT+IH L L L I+
Sbjct: 485 QILVLNEFPTLNDDCMIAIAAKCTKIHTLSILGSPLLTDETFKRLANNRHLRKLRIEGNQ 544
Query: 167 CITDSDMKPL-SGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNL-EGCPVTAACLDS 223
I+D +K + T L+ L ++ C ++TD+ + + KL + N+ + +T + S
Sbjct: 545 RISDLSLKAIGKNCTELEHLYLADCQRLTDASLKAIANCSKLVVCNMADVVQITNTGVQS 604
Query: 224 L---SALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNE-ITDECLVHLKG-LTN 277
L S SL LNL C ++ D K +L L++ F E I+++ + L G L
Sbjct: 605 LAEGSCAASLRELNLTNCIRVGDMAMFNIRKFKNLVYLSVCFCEHISEKSGIELLGQLHA 664
Query: 278 LESLNLDSCGIGDEGLVNLTGLCN-LKCLELSD-TQVGSSGLRHLS-GLTNLESINLSFT 334
L SL++ C DEGL +L N L+ + LS+ + GL+ + ++E ++LS
Sbjct: 665 LVSLDISGCNCSDEGLSSLGKYNNHLRDVTLSECADITDLGLQKFTQQCKDIERLDLSHC 724
Query: 335 G-ISDGSLRKLAG-LSSLKSLNLDA-RQITDTGLAALTSLTGLTH-LDLFGA-RITDSGA 389
++DG+++ LA L SLNL + IT+ + L+ + H LD+ G ITD
Sbjct: 725 KLLTDGAIKNLAFCCRYLTSLNLAGCKLITNLSIQYLSGVCHHLHTLDISGCIIITDKAL 784
Query: 390 AYLRS 394
YLR
Sbjct: 785 KYLRK 789
>gi|290985732|ref|XP_002675579.1| predicted protein [Naegleria gruberi]
gi|284089176|gb|EFC42835.1| predicted protein [Naegleria gruberi]
Length = 345
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 72/252 (28%), Positives = 117/252 (46%), Gaps = 33/252 (13%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
+L+SLN+ +C + +S TNL+ L I+ S ++ ++ +LT LNL G
Sbjct: 94 FQRLKSLNLFFC---LKECFEHISKFTNLEMLSITQSDFENA--LWIGNFTQLTYLNLNG 148
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDD------------------------GCEKFS 249
V + +++ S+ LNL+ L DD GCE S
Sbjct: 149 NFVGRSGCENIRNCQSIMELNLSNNDLQDDACVYLSELKNLKILLVENNDIGENGCESLS 208
Query: 250 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 309
+I +L LN+ N I D+ ++ L+NL L+ C IG + NLT L L LELS
Sbjct: 209 RIETLTKLNISRNHIHDDGFSNICKLSNLTHLHASCCLIG--SVSNLTNLNKLIELELSG 266
Query: 310 TQVGSSGLRHLSGLTNLESINL--SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 367
+ + G++ +S + NL +NL S+ ISD ++ L L +L+ L+L + +
Sbjct: 267 NLIDNEGVKVISEMQNLRILNLVNSYMHISDDAVHYLTKLVNLELLDLSENSLNIEDIDC 326
Query: 368 LTSLTGLTHLDL 379
L SL L + +
Sbjct: 327 LKSLPRLREVKI 338
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 92/188 (48%), Gaps = 7/188 (3%)
Query: 210 NLEGCPVTAACLDSLSALGS---LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 266
NLE +T + ++ +G+ L YLNLN + GCE S+ LNL N++ D
Sbjct: 118 NLEMLSITQSDFENALWIGNFTQLTYLNLNGNFVGRSGCENIRNCQSIMELNLSNNDLQD 177
Query: 267 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 326
+ V+L L NL+ L +++ IG+ G +L+ + L L +S + G ++ L+NL
Sbjct: 178 DACVYLSELKNLKILLVENNDIGENGCESLSRIETLTKLNISRNHIHDDGFSNICKLSNL 237
Query: 327 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA--RI 384
++ S I GS+ L L+ L L L I + G+ ++ + L L+L + I
Sbjct: 238 THLHASCCLI--GSVSNLTNLNKLIELELSGNLIDNEGVKVISEMQNLRILNLVNSYMHI 295
Query: 385 TDSGAAYL 392
+D YL
Sbjct: 296 SDDAVHYL 303
Score = 44.7 bits (104), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 72/277 (25%), Positives = 126/277 (45%), Gaps = 36/277 (12%)
Query: 55 QGSSLLS-VDLSGSDVTDSGLIHLKDCSNLQ---SLDFNFCIQISDGGLEHLRGLSNLTS 110
Q LL+ V S +D + G I +K C++ Q SL+ FC++ EH+ +NL
Sbjct: 66 QSQRLLNIVGFSSTDNSSLG-IFVKYCTDFQRLKSLNLFFCLK---ECFEHISKFTNLEM 121
Query: 111 LSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD 170
LS +++ A + F L L+L G N++ + LN+ N + D
Sbjct: 122 LSITQSDFENALWIGNFTQL---TYLNLNGNFVGRSGCENIRNCQSIMELNLSN-NDLQD 177
Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG-----------CPVT-- 217
LS L NLK L + + + ++G L ++ LT LN+ C ++
Sbjct: 178 DACVYLSELKNLKILLVENNDIGENGCESLSRIETLTKLNISRNHIHDDGFSNICKLSNL 237
Query: 218 ----AAC-----LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL--GFNEITD 266
A+C + +L+ L L L L+ + ++G + S++ +L++LNL + I+D
Sbjct: 238 THLHASCCLIGSVSNLTNLNKLIELELSGNLIDNEGVKVISEMQNLRILNLVNSYMHISD 297
Query: 267 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 303
+ + +L L NLE L+L + E + L L L+
Sbjct: 298 DAVHYLTKLVNLELLDLSENSLNIEDIDCLKSLPRLR 334
>gi|157111144|ref|XP_001651407.1| leucine-rich transmembrane proteins [Aedes aegypti]
gi|108878510|gb|EAT42735.1| AAEL005762-PA [Aedes aegypti]
Length = 596
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 96/350 (27%), Positives = 148/350 (42%), Gaps = 36/350 (10%)
Query: 63 DLSGSDVTDSGLIHLKDCS-----NLQSLDF--NFCIQI---SDGGLEHLRGLSNLTSLS 112
DL ++TDS L +L+D + NL+ L+F N I SD LE NL +L
Sbjct: 85 DLHTLEITDSRLNNLQDFALNGLRNLEVLNFSRNNLTTIKSWSDHDLE------NLQTLD 138
Query: 113 FRRN--NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL------KGLMKLESLNIKW 164
RRN I +Q K + NL KL+L G L+ + K + L+ LN+
Sbjct: 139 LRRNLVKGINSQSFKRYP---NLNKLNLA------GNLIEVIPESTFKVVPNLKYLNLG- 188
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
N +T + L GL L ++++ G L L L+G +T D L
Sbjct: 189 RNLLTSIEETTLKGLNKLTHAFFHHNQISFVDFFAFIGNSHLKTLQLQGNQITIFETDLL 248
Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284
S L L +LN++ QL D F K L+VL+L +N I KGL +LE N
Sbjct: 249 SNLPRLTFLNISYNQLEDIADHTFKKNADLRVLDLSYNRIEKFREDGFKGLVSLEVFNAS 308
Query: 285 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 344
+ +++ L+LS ++ + LE +NLS IS+
Sbjct: 309 HNHLTQLNKYIFKDFSSVRILDLSGNRLTYIDNKLFEYSPRLEMLNLSRNSISEIEPNIF 368
Query: 345 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRS 394
L +L+L Q+++ A L + L+HL++ + A+ L S
Sbjct: 369 EDSRKLLTLDLSHNQLSED--AFLWPIVSLSHLNMSYNQFQRLNASVLES 416
Score = 43.1 bits (100), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 96/255 (37%), Gaps = 48/255 (18%)
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC------LDSLSAL----- 227
T+L +L+I+ S++ + L GL+ L +LN +T L++L L
Sbjct: 83 FTDLHTLEITDSRLNNLQDFALNGLRNLEVLNFSRNNLTTIKSWSDHDLENLQTLDLRRN 142
Query: 228 ------GSLF--YLNLNRCQLSDDGCE-----KFSKIGSLKVLNLGFNEITDECLVHLKG 274
F Y NLN+ L+ + E F + +LK LNLG N +T LKG
Sbjct: 143 LVKGINSQSFKRYPNLNKLNLAGNLIEVIPESTFKVVPNLKYLNLGRNLLTSIEETTLKG 202
Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 334
L L I G +LK L+L Q+ LS L L +N+S+
Sbjct: 203 LNKLTHAFFHHNQISFVDFFAFIGNSHLKTLQLQGNQITIFETDLLSNLPRLTFLNISYN 262
Query: 335 ---GISDGSLRK---------------------LAGLSSLKSLNLDARQITDTGLAALTS 370
I+D + +K GL SL+ N +T
Sbjct: 263 QLEDIADHTFKKNADLRVLDLSYNRIEKFREDGFKGLVSLEVFNASHNHLTQLNKYIFKD 322
Query: 371 LTGLTHLDLFGARIT 385
+ + LDL G R+T
Sbjct: 323 FSSVRILDLSGNRLT 337
>gi|260821706|ref|XP_002606244.1| hypothetical protein BRAFLDRAFT_84015 [Branchiostoma floridae]
gi|229291585|gb|EEN62254.1| hypothetical protein BRAFLDRAFT_84015 [Branchiostoma floridae]
Length = 419
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 90/284 (31%), Positives = 143/284 (50%), Gaps = 23/284 (8%)
Query: 24 SLEAF-RDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDL-SGSDVTDSGLIHLKD- 79
+LE F ++C ++ LCL + + + + LL +DL S S +TD+ L L D
Sbjct: 91 ALEIFAQNCRNIESLCLAGCKKITNGTCNSLGKFSHKLLWLDLGSCSLITDNALKALSDG 150
Query: 80 CSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK-LD 137
C L+ L +C QI++ G+E L RG + L L + +T + +K A LV+ L+
Sbjct: 151 CPLLEYLSIAWCDQITENGIEALARGCNKLQVLIAKGCILLTDRALKHLANYCPLVRTLN 210
Query: 138 LERCTRI-HGGLVNLK-GLMKLESLNIKWCNCITDSDMKPL-SGLTNLKSLQIS-CSKVT 193
L C + G+ ++ G LESL + C +TD + L +G L++L+++ CS+ T
Sbjct: 211 LHSCNNVTDDGIRHISSGCHLLESLCVSGCTHLTDGTLVALGAGCYQLRTLELAGCSQFT 270
Query: 194 DSGIAYL-KGLQKLTLLNLEGCP-VTAACLDSLSA-LGSLFYLNLNRCQLSDDGCEKFSK 250
D+G L + L ++LE C +T A L L+A L L+L+ C+L D E +
Sbjct: 271 DNGFMVLARNCHHLERMDLEECVLITDATLGHLAAHCPWLSKLSLSHCELITD--EGIRQ 328
Query: 251 IGS-------LKVLNL-GFNEITDECLVHLKGLTNLESLNLDSC 286
+G+ L+VL L ITD L HL G +LE + L C
Sbjct: 329 LGTGACAPEHLEVLELDNCPLITDASLEHLMGCQSLERIELYDC 372
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 109/393 (27%), Positives = 165/393 (41%), Gaps = 67/393 (17%)
Query: 14 LVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLS--GSDVTD 71
L+ R E+ L F + LC + V+ W +++A GS+ VDL D+
Sbjct: 6 LICKRLPKELILRIFSHLDVVSLC--RCAQVSKAW-NILALDGSNWQRVDLFDFQVDIES 62
Query: 72 SGLIHL-KDCSN-LQSLDFNFCIQISDGGLE-HLRGLSNLTSLSFRRNNAITAQGMKAFA 128
S + HL + C L+ L C + D LE + N+ SL IT +
Sbjct: 63 SVVEHLSRRCGGFLRQLSLRGCQSVQDRALEIFAQNCRNIESLCLAGCKKITNGTCNSLG 122
Query: 129 GLIN-LVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTN---- 181
+ L+ LDL C+ I + G LE L+I WC+ IT++ ++ L+ N
Sbjct: 123 KFSHKLLWLDLGSCSLITDNALKALSDGCPLLEYLSIAWCDQITENGIEALARGCNKLQV 182
Query: 182 -----------------------LKSLQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPV 216
+++L + SC+ VTD GI ++ G L L + GC
Sbjct: 183 LIAKGCILLTDRALKHLANYCPLVRTLNLHSCNNVTDDGIRHISSGCHLLESLCVSGC-- 240
Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL-------KVLNLGFNE---ITD 266
T +L ALG+ Y L +L+ GC +F+ G + + + E ITD
Sbjct: 241 THLTDGTLVALGAGCY-QLRTLELA--GCSQFTDNGFMVLARNCHHLERMDLEECVLITD 297
Query: 267 ECLVHLKG-LTNLESLNLDSCG-IGDEGLVNL-TGLC---NLKCLELSDTQ-VGSSGLRH 319
L HL L L+L C I DEG+ L TG C +L+ LEL + + + L H
Sbjct: 298 ATLGHLAAHCPWLSKLSLSHCELITDEGIRQLGTGACAPEHLEVLELDNCPLITDASLEH 357
Query: 320 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
L G +LE I L D L AG+ L++
Sbjct: 358 LMGCQSLERIEL-----YDCQLITRAGIRRLRA 385
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 86/191 (45%), Gaps = 24/191 (12%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHL-KDCSNLQSLDFNF 90
L+ LC+ + D + + + L +++L+G S TD+G + L ++C +L+ +D
Sbjct: 232 LESLCVSGCTHLTDGTLVALGAGCYQLRTLELAGCSQFTDNGFMVLARNCHHLERMDLEE 291
Query: 91 CIQISDGGLEHLRG-LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLV 149
C+ I+D L HL L+ LS IT +G++ +L C H
Sbjct: 292 CVLITDATLGHLAAHCPWLSKLSLSHCELITDEGIR---------QLGTGACAPEH---- 338
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTL 208
LE L + C ITD+ ++ L G +L+ +++ C +T +GI L+
Sbjct: 339 -------LEVLELDNCPLITDASLEHLMGCQSLERIELYDCQLITRAGIRRLRAQLPNIK 391
Query: 209 LNLEGCPVTAA 219
++ PVT
Sbjct: 392 VHAYFAPVTPP 402
>gi|290980195|ref|XP_002672818.1| predicted protein [Naegleria gruberi]
gi|284086397|gb|EFC40074.1| predicted protein [Naegleria gruberi]
Length = 350
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 71/284 (25%), Positives = 142/284 (50%), Gaps = 15/284 (5%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDF--NFCIQISDGGLEH 101
++ W +VI ++ LSVDL D ++ N+ L N +I G +
Sbjct: 60 ISRNWHEVIKNRAK--LSVDLEVEDKIVENIVKSGIIGNIVELKLVGNSVCRIRTKGAQL 117
Query: 102 L-RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT-RI-HGGLVNLKGLMKLE 158
+ + L+ LT+L N +I +G K + + NL L++ C+ RI + G ++ G+ L
Sbjct: 118 ISQNLTQLTNLDLSYN-SIGDEGAKHISTMANLTSLNI--CSNRIGYSGSFSVFGMKNLI 174
Query: 159 SLNIKWCNCITDSD----MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 214
SL++ + ++D M +S LKSL++ S + D + + +++LT L++ C
Sbjct: 175 SLDLSYSAFSLENDETFQMNVISQSKTLKSLRVRYSDLNDRSVEKISEIKQLTKLDVSNC 234
Query: 215 P-VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
P ++ + +S + +L LN++ + D+G + S++ L LN+ +++I + +++
Sbjct: 235 PNLSVVGVKFISQMENLNNLNISCNYIGDEGAKIISEMSQLTDLNISYSKIGNTGAMYIS 294
Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 317
L L +LN+ + IG EG +L+ L L L ++ + + G
Sbjct: 295 QLGKLTTLNISTNNIGAEGAKSLSHLSQLTDLNINANNIETEGF 338
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 104/219 (47%), Gaps = 10/219 (4%)
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG--SLFYLNL 235
LT L +L +S + + D G ++ + LT LN+ C S S G +L L+L
Sbjct: 121 NLTQLTNLDLSYNSIGDEGAKHISTMANLTSLNI--CSNRIGYSGSFSVFGMKNLISLDL 178
Query: 236 NRCQLSDDGCEKF-----SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIG 289
+ S + E F S+ +LK L + ++++ D + + + L L++ +C +
Sbjct: 179 SYSAFSLENDETFQMNVISQSKTLKSLRVRYSDLNDRSVEKISEIKQLTKLDVSNCPNLS 238
Query: 290 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 349
G+ ++ + NL L +S +G G + +S ++ L +N+S++ I + ++ L
Sbjct: 239 VVGVKFISQMENLNNLNISCNYIGDEGAKIISEMSQLTDLNISYSKIGNTGAMYISQLGK 298
Query: 350 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 388
L +LN+ I G +L+ L+ LT L++ I G
Sbjct: 299 LTTLNISTNNIGAEGAKSLSHLSQLTDLNINANNIETEG 337
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 106/235 (45%), Gaps = 9/235 (3%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI-QISDGGLEHL 102
+ K +I+ + L ++DLS + + D G H+ +NL SL N C +I G +
Sbjct: 110 IRTKGAQLISQNLTQLTNLDLSYNSIGDEGAKHISTMANLTSL--NICSNRIGYSGSFSV 167
Query: 103 RGLSNLTSL-----SFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
G+ NL SL +F N T Q M + L L + + + + +L
Sbjct: 168 FGMKNLISLDLSYSAFSLENDETFQ-MNVISQSKTLKSLRVRYSDLNDRSVEKISEIKQL 226
Query: 158 ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
L++ C ++ +K +S + NL +L ISC+ + D G + + +LT LN+ +
Sbjct: 227 TKLDVSNCPNLSVVGVKFISQMENLNNLNISCNYIGDEGAKIISEMSQLTDLNISYSKIG 286
Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
+S LG L LN++ + +G + S + L LN+ N I E +++
Sbjct: 287 NTGAMYISQLGKLTTLNISTNNIGAEGAKSLSHLSQLTDLNINANNIETEGFLNI 341
>gi|290971150|ref|XP_002668393.1| predicted protein [Naegleria gruberi]
gi|284081777|gb|EFC35649.1| predicted protein [Naegleria gruberi]
Length = 300
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 65/256 (25%), Positives = 126/256 (49%), Gaps = 12/256 (4%)
Query: 145 HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQ 204
H VN + L + +L IK + I + + LT+L + K+ + Y+ L+
Sbjct: 51 HSNDVNGQFLQNIANLEIKVLSNIYKK-LILMKSLTSLCIPYVVGVKIDSESVTYIGQLK 109
Query: 205 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC----EKFSKIGSLKVLNLG 260
+LT L ++G + ++S++ L L L ++ + +G E F+K+ L +
Sbjct: 110 QLTSLEIQGMDIDDEHVESMAELKQLTSLYISGNYIGSEGVKIISESFNKLTKLNISANY 169
Query: 261 FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 320
+ + + + LK LT+LE DS IGD G++ L+GL +L L++S ++GS G +++
Sbjct: 170 IDNVGAKYISQLKQLTSLEIACNDS--IGDAGIIYLSGLEHLTNLDISRIKIGSGGAQYI 227
Query: 321 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 380
L +N++ I D L+ ++ L L L++ +I+ G ++ L LT L
Sbjct: 228 GKFEQLTCLNINTCSIDDEVLQSISQLKKLIVLHISENEISIEGAKYISKLNQLTSL--- 284
Query: 381 GARITDSGAAYLRSKF 396
I++SG + +++
Sbjct: 285 --YISESGIRFEQARI 298
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 63/227 (27%), Positives = 101/227 (44%), Gaps = 27/227 (11%)
Query: 66 GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMK 125
G + + ++ L SL+ + I D +E + L LTSL + N I ++G+K
Sbjct: 94 GVKIDSESVTYIGQLKQLTSLEIQ-GMDIDDEHVESMAELKQLTSL-YISGNYIGSEGVK 151
Query: 126 AFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
+ N KL LNI N I + K +S L L SL
Sbjct: 152 IISESFN-----------------------KLTKLNIS-ANYIDNVGAKYISQLKQLTSL 187
Query: 186 QISCS-KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 244
+I+C+ + D+GI YL GL+ LT L++ + + + L LN+N C + D+
Sbjct: 188 EIACNDSIGDAGIIYLSGLEHLTNLDISRIKIGSGGAQYIGKFEQLTCLNINTCSIDDEV 247
Query: 245 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
+ S++ L VL++ NEI+ E ++ L L SL + GI E
Sbjct: 248 LQSISQLKKLIVLHISENEISIEGAKYISKLNQLTSLYISESGIRFE 294
>gi|290980528|ref|XP_002672984.1| FBOX domain-containing protein [Naegleria gruberi]
gi|284086564|gb|EFC40240.1| FBOX domain-containing protein [Naegleria gruberi]
Length = 390
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 78/303 (25%), Positives = 148/303 (48%), Gaps = 20/303 (6%)
Query: 90 FCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT---RIHG 146
FC +I G +E NL L +++ ++ + L L +L+++ C ++
Sbjct: 100 FC-EIGLGVMECFPYFENLQVLKLKKS-LLSDDNSYYVSKLKGLKRLEIDHCVLEPKVFS 157
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
+ ++ L +L+ L+ + N ++K L+ L +LK L++ ++ I L L
Sbjct: 158 YISQIQSLKELQ-LDKNYYN----GELKNLTRLKHLKLLELVNCELELKDINLLLEFGSL 212
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 266
+ LNLE + + +S + +L +L LN ++ I SL+VL LGFNEI
Sbjct: 213 SHLNLELNKIGNLHAECISNMRTLTFLGLNNTNIT---------ILSLEVLYLGFNEIDA 263
Query: 267 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 326
E + +L + L++L L+ IG G V ++ L NL+ L L++T + G+ ++S + +L
Sbjct: 264 EGVEYLVKMKTLKTLILNDNPIGQLGAVLISKLTNLRELNLTNTCMNDKGVEYISKMASL 323
Query: 327 ESINLSFTG-ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
+ + I+ L+ + +L+ L++ A I D G+ L +L L +LD G ++
Sbjct: 324 RDLQIGTNHMITKLGALYLSQMKNLQRLSVPATSINDQGVEFLVNLDSLQYLDARGLPLS 383
Query: 386 DSG 388
G
Sbjct: 384 IRG 386
Score = 46.6 bits (109), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 88/220 (40%), Gaps = 40/220 (18%)
Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 271
E C + ++ +L L L + LSDD SK+ LK L + + + +
Sbjct: 99 EFCEIGLGVMECFPYFENLQVLKLKKSLLSDDNSYYVSKLKGLKRLEIDHCVLEPKVFSY 158
Query: 272 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD---------------------- 309
+ + +L+ L LD E L NLT L +LK LEL +
Sbjct: 159 ISQIQSLKELQLDKNYYNGE-LKNLTRLKHLKLLELVNCELELKDINLLLEFGSLSHLNL 217
Query: 310 --TQVGS------SGLRHLS--GLTN-------LESINLSFTGISDGSLRKLAGLSSLKS 352
++G+ S +R L+ GL N LE + L F I + L + +LK+
Sbjct: 218 ELNKIGNLHAECISNMRTLTFLGLNNTNITILSLEVLYLGFNEIDAEGVEYLVKMKTLKT 277
Query: 353 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
L L+ I G ++ LT L L+L + D G Y+
Sbjct: 278 LILNDNPIGQLGAVLISKLTNLRELNLTNTCMNDKGVEYI 317
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 60/132 (45%), Gaps = 1/132 (0%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
+I G+E+L + L +L +N I G + L NL +L+L G+ +
Sbjct: 260 EIDAEGVEYLVKMKTLKTLILN-DNPIGQLGAVLISKLTNLRELNLTNTCMNDKGVEYIS 318
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
+ L L I + IT LS + NL+ L + + + D G+ +L L L L+
Sbjct: 319 KMASLRDLQIGTNHMITKLGALYLSQMKNLQRLSVPATSINDQGVEFLVNLDSLQYLDAR 378
Query: 213 GCPVTAACLDSL 224
G P++ L++L
Sbjct: 379 GLPLSIRGLETL 390
>gi|224089259|ref|XP_002308665.1| ein3-binding f-box protein 3 [Populus trichocarpa]
gi|222854641|gb|EEE92188.1| ein3-binding f-box protein 3 [Populus trichocarpa]
Length = 646
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 123/429 (28%), Positives = 197/429 (45%), Gaps = 70/429 (16%)
Query: 17 SRCLTEVSLEAF-RDC-ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSG 73
S+ +T+V L A R C +L+ L L P V D+ + IA+ L +DLS +TD G
Sbjct: 176 SQGVTKVGLRAIARGCPSLKVLSLWNLPSVGDEGLSEIANGCHKLEKLDLSQCPAITDKG 235
Query: 74 LIHL-KDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFAG-- 129
L+ + K C NL L C I + GL+ + + +NL S+S + AI QG+ A
Sbjct: 236 LLAIAKSCPNLTDLVIESCTNIGNEGLQAVGQHCTNLKSISIKNCPAIGDQGIAALVSSA 295
Query: 130 --LINLVKLDLERCTRIHGGLV---------------------------NLKGLMKLESL 160
++ VKL T + +V N +GL KL+S+
Sbjct: 296 TNVLTKVKLQALNITDVSLAVVGHYGKAVTDLFLTSLSNVSERGFWVMGNGQGLQKLKSM 355
Query: 161 NIKWCNCITDSDMKPL-SGLTNLKSLQI-SCSKVTDSG-IAYLKGLQKLTLLNLEGCPVT 217
+ C +TD+ ++ + G NLK + CS ++D+G +++ K L L LE C
Sbjct: 356 TVASCVGLTDTGLEAVGKGCPNLKQFNLHKCSFLSDNGLVSFAKSAVSLESLLLEEC--- 412
Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 277
++ G F+ +L C + + G +K L L E++ +
Sbjct: 413 ----HRITQFG--FFGSLLNCGANLKAASLVNCFG-IKDLKLDLPELSP--------CKS 457
Query: 278 LESLNLDSC-GIGDEGLVNLTGLC-NLKCLELSDTQVGSSGLRHLSGLTNLES--INLSF 333
L SL++ +C G GD L L LC L+ +ELS Q G + L L N E+ + ++
Sbjct: 458 LRSLSIRNCPGFGDGSLALLGKLCPQLQNVELSGLQ-GVTDAGFLPVLENCEAGLVKVNL 516
Query: 334 TGISDGSLRKLAGLS-----SLKSLNLDA-RQITDTGLAALT-SLTGLTHLDLFGARITD 386
+G + S + ++ ++ +L+ LNLD R+ITD L A+ + L+ LD+ TD
Sbjct: 517 SGCVNLSDKVVSVMTEQHGWTLEVLNLDGCRRITDASLVAIAENCFLLSDLDVSKCATTD 576
Query: 387 SG-AAYLRS 394
SG AA RS
Sbjct: 577 SGIAAVARS 585
>gi|75907715|ref|YP_322011.1| small GTP-binding protein domain-containing protein [Anabaena
variabilis ATCC 29413]
gi|75701440|gb|ABA21116.1| Small GTP-binding protein domain protein [Anabaena variabilis ATCC
29413]
Length = 1107
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 97/327 (29%), Positives = 159/327 (48%), Gaps = 43/327 (13%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L +DLS + +T+ + + +NL L F QI++ E + L+NLT L +
Sbjct: 149 TNLTQLDLSDNQITEIPEA-IANLTNLTHLIL-FSNQITEIP-EAIANLTNLTQLDLG-D 204
Query: 117 NAITAQGMKAFAGLINLVKLDL--ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
N IT + KA A L NL +LDL + T I + NL L L I + N IT+ +
Sbjct: 205 NQIT-EIPKAIANLTNLTQLDLGDNQITEIPKAIANLTNLTHL----ILFSNQITEIP-E 258
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
++ LTNL L +S +++T+ A + L LT L L +T ++++ L +L L+
Sbjct: 259 AIANLTNLMQLDLSYNQITEIPKA-IANLTNLTQLVLSDNKITEIP-EAIANLTNLTQLD 316
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
L+ ++++ E + + +L L +N+IT + + LTNL L+L S I
Sbjct: 317 LSDNKITE-IPETIANLTNLTELYFNYNKIT-QIAEAIAKLTNLTELHLSSNQI------ 368
Query: 295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 354
TQ+ + ++ LTNL + L++ I+ + +A L++L L+
Sbjct: 369 ---------------TQIPEA----IANLTNLTELYLNYNKITQIA-EAIAKLTNLTELH 408
Query: 355 LDARQITDTGLAALTSLTGLTHLDLFG 381
LD QIT AL SL L LDL G
Sbjct: 409 LDGNQITQIP-EALESLPKLEKLDLRG 434
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 79/267 (29%), Positives = 137/267 (51%), Gaps = 29/267 (10%)
Query: 129 GLINLVKLD-----LERCTRIHGGLVNLKGLM--KLESLNIKWCNCITDSDMKPLSGLTN 181
GL NL KLD LER + +++L+ L+ ++E I ++ LTN
Sbjct: 78 GLPNLRKLDISGNPLERIPDLVTQILHLEELILIRVEITEIPEA----------IANLTN 127
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
L L + +++T++ A K L LT L+L +T ++++ L +L +L L Q++
Sbjct: 128 LTHLILFSNQITETPEAIAK-LTNLTQLDLSDNQITEIP-EAIANLTNLTHLILFSNQIT 185
Query: 242 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD--EGLVNLTGL 299
+ E + + +L L+LG N+IT E + LTNL L+L I + + + NLT L
Sbjct: 186 E-IPEAIANLTNLTQLDLGDNQIT-EIPKAIANLTNLTQLDLGDNQITEIPKAIANLTNL 243
Query: 300 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 359
+L T++ + ++ LTNL ++LS+ I++ + +A L++L L L +
Sbjct: 244 THLILFSNQITEIPEA----IANLTNLMQLDLSYNQITEIP-KAIANLTNLTQLVLSDNK 298
Query: 360 ITDTGLAALTSLTGLTHLDLFGARITD 386
IT+ A+ +LT LT LDL +IT+
Sbjct: 299 ITEIP-EAIANLTNLTQLDLSDNKITE 324
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 118/243 (48%), Gaps = 27/243 (11%)
Query: 154 LMKLESL----NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL 209
L +LESL + + D +K +SG NLK+L + L GL L L
Sbjct: 38 LQQLESLILGKQVGGYEWVGDRYLKKVSG-NNLKTLPLE-----------LLGLPNLRKL 85
Query: 210 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
++ G P+ D ++ + L L L R ++++ E + + +L L L N+IT E
Sbjct: 86 DISGNPL-ERIPDLVTQILHLEELILIRVEITE-IPEAIANLTNLTHLILFSNQIT-ETP 142
Query: 270 VHLKGLTNLESLNLDSCGIGD--EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 327
+ LTNL L+L I + E + NLT L +L T++ + ++ LTNL
Sbjct: 143 EAIAKLTNLTQLDLSDNQITEIPEAIANLTNLTHLILFSNQITEIPEA----IANLTNLT 198
Query: 328 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 387
++L I++ + +A L++L L+L QIT+ A+ +LT LTHL LF +IT+
Sbjct: 199 QLDLGDNQITEIP-KAIANLTNLTQLDLGDNQITEIP-KAIANLTNLTHLILFSNQITEI 256
Query: 388 GAA 390
A
Sbjct: 257 PEA 259
>gi|290993931|ref|XP_002679586.1| hypothetical protein NAEGRDRAFT_47566 [Naegleria gruberi]
gi|284093203|gb|EFC46842.1| hypothetical protein NAEGRDRAFT_47566 [Naegleria gruberi]
Length = 675
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 87/271 (32%), Positives = 133/271 (49%), Gaps = 41/271 (15%)
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLT-NLKSLQIS-CSKVTDSGIAYLKGLQKLTLLN 210
GL L +LN++ C+ ITD+ +K L+ ++ NL L + C+KV DS ++Y+ +L L+
Sbjct: 337 GLQTLHTLNVQGCHYITDNGVKYLTYISQNLTHLNLRGCTKVNDSAMSYISQFSQLNYLD 396
Query: 211 LEGC-PVTAACLDSLSALG---SLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNEIT 265
+ GC VT + LS L YL+L C Q++D+G S++ L+ L L
Sbjct: 397 MTGCVNVTDLGVKHLSQSACKTKLKYLDLTFCHQVTDEGVRYLSEMTELEDLTL------ 450
Query: 266 DECLVHL--KGLT-------NLESLNLDSC------GIGDEGLVNLTGLCNLKCLELSDT 310
+C H+ KGLT N+ LNL C G+ L L L + C SD
Sbjct: 451 -QCCRHITAKGLTQLVNSCQNIRVLNLTGCHLLEISGVRSGSLPKLEKLSMMGCKLTSD- 508
Query: 311 QVGSSGLRHLSGLT-NLESINLSFTG-ISDGSL-RKLAGLSSLKSLNLDA-RQITDTGLA 366
+ LR +S T NL+ + LSF+ I+DG + R + +L LNL ITD L
Sbjct: 509 ----NCLRVISDWTCNLKELVLSFSDMITDGGIERVIINSKNLSHLNLKKCSNITDKSLE 564
Query: 367 ALTSLTG--LTHLDLFGAR-ITDSGAAYLRS 394
++ + +L+L G R T+ G YL +
Sbjct: 565 CISKHLSNVVEYLNLTGVRGFTNGGLKYLEN 595
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 84/278 (30%), Positives = 137/278 (49%), Gaps = 36/278 (12%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDC---SNLQSLDFNFCIQISDGGL 99
VND M I SQ S L +D++G +VTD G+ HL + L+ LD FC Q++D G+
Sbjct: 378 VNDSAMSYI-SQFSQLNYLDMTGCVNVTDLGVKHLSQSACKTKLKYLDLTFCHQVTDEGV 436
Query: 100 EHLRGLSNLTSLSFRRNNAITAQGMKAFAG-LINLVKLDLERCTRIHGGLVNLKGLMKLE 158
+L ++ L L+ + ITA+G+ N+ L+L C + V L KLE
Sbjct: 437 RYLSEMTELEDLTLQCCRHITAKGLTQLVNSCQNIRVLNLTGCHLLEISGVRSGSLPKLE 496
Query: 159 SLNIKWCNCITDSDMKPLSGLT-NLKSLQISCSK-VTDSGIAYLKGLQKLTLLNLEGCPV 216
L++ C +D+ ++ +S T NLK L +S S +TD GI + ++N +
Sbjct: 497 KLSMMGCKLTSDNCLRVISDWTCNLKELVLSFSDMITDGGI-------ERVIINSKN--- 546
Query: 217 TAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGS--LKVLNL-GFNEITDECLVHL 272
L +LNL +C ++D E SK S ++ LNL G T+ L +L
Sbjct: 547 -------------LSHLNLKKCSNITDKSLECISKHLSNVVEYLNLTGVRGFTNGGLKYL 593
Query: 273 KGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD 309
+ T+L+ + C + +EGL +L +L+ L++S+
Sbjct: 594 ENCTSLKEFVIQRCIHVNNEGLAHLAYCPSLEILDISE 631
>gi|300704108|ref|YP_003745710.1| leucine-rich-repeat type III effector protein (gala4) [Ralstonia
solanacearum CFBP2957]
gi|299071771|emb|CBJ43095.1| leucine-rich-repeat type III effector protein (GALA4) [Ralstonia
solanacearum CFBP2957]
Length = 461
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 66/224 (29%), Positives = 109/224 (48%), Gaps = 5/224 (2%)
Query: 168 ITDSDMKPLSGLTNLKSLQISC--SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
TD+D++ L +L+ L +S +T GIA+L L L L++ GC + A L+
Sbjct: 133 FTDADLQRLP--PSLRELDLSLCEGPITAVGIAHLLAL-PLDRLDVSGCELNADSARLLA 189
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
+L LNL R + D G F++ L LN+ N I + L T + +L++ +
Sbjct: 190 GHPTLTTLNLRRNAIDDAGVAAFARNKKLTTLNVSSNGIGPAGVRALAANTTITTLDISN 249
Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 345
IGDEG + L L L+ SD +G G + L+ T L S++LS+ I + L
Sbjct: 250 NEIGDEGALALASNTTLTRLDASDCGIGPEGTQALATSTTLTSLDLSYNAIEAEGVEALG 309
Query: 346 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 389
++L++L+ ++ L + T LT L+L I ++GA
Sbjct: 310 RNTTLRTLHACGNELGHREAELLAANTTLTVLNLSSNAIGNAGA 353
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 86/323 (26%), Positives = 146/323 (45%), Gaps = 14/323 (4%)
Query: 70 TDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA----ITAQGMK 125
TD+ L L +L+ LD + C +G + + G+++L +L R + + A +
Sbjct: 134 TDADLQRLP--PSLRELDLSLC----EGPITAV-GIAHLLALPLDRLDVSGCELNADSAR 186
Query: 126 AFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
AG L L+L R G+ KL +LN+ N I + ++ L+ T + +L
Sbjct: 187 LLAGHPTLTTLNLRRNAIDDAGVAAFARNKKLTTLNVS-SNGIGPAGVRALAANTTITTL 245
Query: 186 QISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 245
IS +++ D G L LT L+ C + +L+ +L L+L+ + +G
Sbjct: 246 DISNNEIGDEGALALASNTTLTRLDASDCGIGPEGTQALATSTTLTSLDLSYNAIEAEGV 305
Query: 246 EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 305
E + +L+ L+ NE+ L T L LNL S IG+ G N +
Sbjct: 306 EALGRNTTLRTLHACGNELGHREAELLAANTTLTVLNLSSNAIGNAGARAFG--ANTTLV 363
Query: 306 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 365
EL+ + G + + L +++LS I D + + LA +L +LN+ + +I DTG
Sbjct: 364 ELNLSNNGIERVPEWADNGKLTTLDLSNNQIGDTAAQVLAASRTLTTLNVGSNRIGDTGA 423
Query: 366 AALTSLTGLTHLDLFGARITDSG 388
AL T LT L++ RI +G
Sbjct: 424 CALAGNTTLTTLNVSLNRIGKAG 446
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 74/276 (26%), Positives = 120/276 (43%), Gaps = 11/276 (3%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+L +++L + + D+G+ L +L+ + I G+ L + +T+L N
Sbjct: 192 PTLTTLNLRRNAIDDAGVAAFARNKKLTTLNVS-SNGIGPAGVRALAANTTITTLDIS-N 249
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N I +G A A L +LD C G L L SL++ + N I ++ L
Sbjct: 250 NEIGDEGALALASNTTLTRLDASDCGIGPEGTQALATSTTLTSLDLSY-NAIEAEGVEAL 308
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
T L++L +++ L LT+LNL + A + A +L LNL
Sbjct: 309 GRNTTLRTLHACGNELGHREAELLAANTTLTVLNLSSNAIGNAGARAFGANTTLVELNL- 367
Query: 237 RCQLSDDGCEKFSKI---GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
S++G E+ + G L L+L N+I D L L +LN+ S IGD G
Sbjct: 368 ----SNNGIERVPEWADNGKLTTLDLSNNQIGDTAAQVLAASRTLTTLNVGSNRIGDTGA 423
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 329
L G L L +S ++G +G+ L+ T LE +
Sbjct: 424 CALAGNTTLTTLNVSLNRIGKAGMLALAANTTLEKL 459
Score = 45.1 bits (105), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 80/183 (43%), Gaps = 20/183 (10%)
Query: 203 LQKLTLLNLEGC-----PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 257
+Q+LT+ N +G P L L+ +G +L R SL+ L
Sbjct: 101 IQQLTITNRKGSGGIPSPDDYPALRKLTLVGPFTDADLQRLP------------PSLREL 148
Query: 258 NLGFNE--ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 315
+L E IT + HL L L+ L++ C + + L G L L L + +
Sbjct: 149 DLSLCEGPITAVGIAHLLALP-LDRLDVSGCELNADSARLLAGHPTLTTLNLRRNAIDDA 207
Query: 316 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 375
G+ + L ++N+S GI +R LA +++ +L++ +I D G AL S T LT
Sbjct: 208 GVAAFARNKKLTTLNVSSNGIGPAGVRALAANTTITTLDISNNEIGDEGALALASNTTLT 267
Query: 376 HLD 378
LD
Sbjct: 268 RLD 270
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 60/137 (43%), Gaps = 11/137 (8%)
Query: 263 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL-----SDTQVGSSGL 317
TD L L +L L+L C EG + G+ +L L L S ++ +
Sbjct: 132 PFTDADLQRLP--PSLRELDLSLC----EGPITAVGIAHLLALPLDRLDVSGCELNADSA 185
Query: 318 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 377
R L+G L ++NL I D + A L +LN+ + I G+ AL + T +T L
Sbjct: 186 RLLAGHPTLTTLNLRRNAIDDAGVAAFARNKKLTTLNVSSNGIGPAGVRALAANTTITTL 245
Query: 378 DLFGARITDSGAAYLRS 394
D+ I D GA L S
Sbjct: 246 DISNNEIGDEGALALAS 262
>gi|343423900|emb|CCD18013.1| leucine-rich repeat protein [Trypanosoma vivax Y486]
Length = 648
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 106/332 (31%), Positives = 170/332 (51%), Gaps = 50/332 (15%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT-AQGMKAFAGLINLVK 135
L + S+L++LD + C I+D + L S+L +L IT + F+ +L
Sbjct: 131 LSELSSLRTLDLSHCTGITD--VSPLLKFSSLHTLDLSHCTGITDVSPLLMFS---SLRM 185
Query: 136 LDLERCTRIHGGLVNLKGLMKLESL-NIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVT 193
LD+ CT G+ N+ L KL SL + + C +++ PLS L++L++L IS C+ +T
Sbjct: 186 LDISHCT----GITNVSPLSKLSSLRTLYFLYCTGITNVSPLSELSSLRTLDISHCTGIT 241
Query: 194 DSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD--------GC 245
D ++ L L L +L+L C + + LS + +L L+L+ C D G
Sbjct: 242 D--VSPLSELSSLRMLDLSHC-TDISNVSRLSKIIALQKLDLSHCTGVTDVSPLSKMIGL 298
Query: 246 EK--------------FSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIG 289
EK S++ SL++LNL ITD + L ++L +L+L C GI
Sbjct: 299 EKLYLSHCTGITDVPPLSELSSLRMLNLSHCTGITD--VSPLSEFSSLHTLDLSHCTGIT 356
Query: 290 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLS 348
D + L+ L +L+ L+LS G + + LS L++L +++LS TGI+D S L+ LS
Sbjct: 357 D--VSPLSELSSLRTLDLSHCT-GITDVSPLSELSSLCTLDLSHCTGITDVS--PLSKLS 411
Query: 349 SLKSLNLD-ARQITDTGLAALTSLTGLTHLDL 379
SL +L L ITD ++ L+ L+ L LDL
Sbjct: 412 SLCTLELSHCTGITD--VSPLSELSSLRTLDL 441
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 80/243 (32%), Positives = 124/243 (51%), Gaps = 23/243 (9%)
Query: 54 SQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS 112
S+ SSL +++LS + +TD L + S+L++LD + C I+D + L LS L L
Sbjct: 408 SKLSSLCTLELSHCTGITDVS--PLSELSSLRTLDLSHCTGITD--VSPLSELSGLRMLY 463
Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI-KWCNCITDS 171
+IT + + L +L L+L CT G+ ++ L + SL+I +C +
Sbjct: 464 LSHCPSIT--DVSPLSELSSLRMLNLSHCT----GITDVSPLSEFSSLHILGLSHCTGIT 517
Query: 172 DMKPLSGLTNLKSLQIS-CSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 229
D+ PLS L++L L +S C+ +TD S + + G +KL L N G +T LS L S
Sbjct: 518 DVSPLSKLSSLHILGLSHCTGITDVSPLTTIIGFEKLYLSNCTG--ITDV--SPLSELSS 573
Query: 230 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-G 287
L L+L+ C D SK+ SL+ L ITD + L L++L +L+L C G
Sbjct: 574 LRTLDLSHCTGITD-VSPLSKLSSLRTLYFSHCTGITD--VSPLSELSSLRTLDLLHCTG 630
Query: 288 IGD 290
I D
Sbjct: 631 ITD 633
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 85/184 (46%), Gaps = 12/184 (6%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
L + S+L+ L+ + C I+D + L S+L L IT + + L +L L
Sbjct: 476 LSELSSLRMLNLSHCTGITD--VSPLSEFSSLHILGLSHCTGIT--DVSPLSKLSSLHIL 531
Query: 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDS 195
L CT I + L ++ E L + C ITD + PLS L++L++L +S C+ +TD
Sbjct: 532 GLSHCTGI-TDVSPLTTIIGFEKLYLSNCTGITD--VSPLSELSSLRTLDLSHCTGITD- 587
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
++ L L L L C + LS L SL L+L C D S++ SL
Sbjct: 588 -VSPLSKLSSLRTLYFSHC-TGITDVSPLSELSSLRTLDLLHCTGITD-VSPLSELSSLG 644
Query: 256 VLNL 259
L+
Sbjct: 645 TLDF 648
>gi|254825773|ref|ZP_05230774.1| internalin [Listeria monocytogenes FSL J1-194]
gi|293595017|gb|EFG02778.1| internalin [Listeria monocytogenes FSL J1-194]
Length = 823
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 94/303 (31%), Positives = 145/303 (47%), Gaps = 47/303 (15%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS--FRRNNAITAQGMKAFAGLINLVKLDL 138
+NL+ L+ N QI+D + LSNL L+ + N IT + A L NL +L L
Sbjct: 99 TNLEYLNLN-GNQITD-----ISPLSNLVKLTNLYIGTNKIT--DISALQNLTNLRELYL 150
Query: 139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGI 197
+ L L K+ SLN+ + + SD+ PLS +T L L ++ SKV D + I
Sbjct: 151 NEDNI--SDISPLANLTKMYSLNLGANHNL--SDLSPLSNMTGLNYLTVTESKVKDVTPI 206
Query: 198 AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD-DGCEKFSKIGSLKV 256
A L L L+L N + L++L SL Y Q++D +++ SLK+
Sbjct: 207 ANLTDLYSLSL-NYNQI----EDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKI 261
Query: 257 -------------------LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
L +G N+I+D + +K LT L+ LN+ S I D ++N
Sbjct: 262 GNNKITDLSPLANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISDISVLN-- 317
Query: 298 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 357
L L L L++ Q+G+ + + GLTNL ++ LS I+D +R LA LS + S + A
Sbjct: 318 NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD--IRPLASLSKMDSADF-A 374
Query: 358 RQI 360
Q+
Sbjct: 375 NQV 377
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 85/288 (29%), Positives = 125/288 (43%), Gaps = 56/288 (19%)
Query: 139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD---- 194
E+ I G ++ L LE LN+ N ITD + PLS L L +L I +K+TD
Sbjct: 87 EKVASIQG----IEYLTNLEYLNLN-GNQITD--ISPLSNLVKLTNLYIGTNKITDISAL 139
Query: 195 ----------------SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
S I+ L L K+ LNL G + L LS + L YL +
Sbjct: 140 QNLTNLRELYLNEDNISDISPLANLTKMYSLNL-GANHNLSDLSPLSNMTGLNYLTVTES 198
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN---------------- 282
++ D + + L L+L +N+I D + L LT+L
Sbjct: 199 KVKD--VTPIANLTDLYSLSLNYNQIED--ISPLASLTSLHYFTAYVNQITDITPVANMT 254
Query: 283 -LDSCGIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
L+S IG+ + +L+ L NL LE+ Q+ S + + LT L+ +N+ ISD
Sbjct: 255 RLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQI--SDINAVKDLTKLKMLNVGSNQISD 312
Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
S+ L LS L SL L+ Q+ + + + LT LT L L ITD
Sbjct: 313 ISV--LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD 358
>gi|115504803|ref|XP_001219194.1| leucine-rich repeat protein (LRRP) [Trypanosoma brucei TREU927]
gi|83642676|emb|CAJ16709.1| leucine-rich repeat protein (LRRP), putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
Length = 735
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 94/350 (26%), Positives = 145/350 (41%), Gaps = 55/350 (15%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
+DLSG+ +++ L ++ + L+ LD +FC + D + + + L L+ + +IT
Sbjct: 329 LDLSGTSISNESLWNISESKLLRRLDLSFCGGVKD--ISPISDIVTLEELNLKGCTSIT- 385
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
+G+ L+NL L++ G L N+ + L L++ C + D + +
Sbjct: 386 EGVDKLGNLVNLHILNMSNTPLQSGFLYNISSIESLVELDLSSCWGVASLDSSVQTAVRM 445
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC--- 238
K + GI L L KL LLN+ PVT CL L SL +LNL+ C
Sbjct: 446 RKGSYPLARHI--EGINALGRLPKLRLLNMSSTPVTDECLHGLQMCKSLVWLNLSLCANL 503
Query: 239 ------------QLSDDGC--------EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 278
+ D GC ++ L++L+L ITD CL + +
Sbjct: 504 TDVSPLSSVKTLEEVDLGCCGNLKWGAGSLRRLPQLRILDLKNTVITDHCLGDVTYGGGV 563
Query: 279 ESLNLDSCGIGDEGL--VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 336
S L CG+ D ++ NL L+LS G + + HL+ +T LE L FTG
Sbjct: 564 VSRMLGRCGMADLSFSRWSIRRGGNLVRLDLSSCW-GLTDIAHLTSITTLE--ELRFTG- 619
Query: 337 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
R + D G+ AL L L LDL G ITD
Sbjct: 620 --------------------CRNLKD-GVDALGQLPVLHLLDLSGTSITD 648
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 98/387 (25%), Positives = 158/387 (40%), Gaps = 78/387 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSL----- 111
S L +DL G +T + L C+ L L + C GL + LSNL SL
Sbjct: 253 SHLFRLDLRGVHLTYRVVYSLSKCTGLTELYVSSC-----EGLSGVAWLSNLESLGDLDV 307
Query: 112 SFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDS 171
+R+N T A L L LDL + + L N+ L L++ +C +
Sbjct: 308 QWRKNLKHTGD---VLACLPLLRVLDLSGTSISNESLWNISESKLLRRLDLSFCGGV--K 362
Query: 172 DMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
D+ P+S + L+ L + C+ +T+ G+ L L L +LN+ P+ + L ++S++ SL
Sbjct: 363 DISPISDIVTLEELNLKGCTSITE-GVDKLGNLVNLHILNMSNTPLQSGFLYNISSIESL 421
Query: 231 FYLNLNRCQ-----------------------LSDDGCEKFSKIGSLKVLNLGFNEITDE 267
L+L+ C +G ++ L++LN+ +TDE
Sbjct: 422 VELDLSSCWGVASLDSSVQTAVRMRKGSYPLARHIEGINALGRLPKLRLLNMSSTPVTDE 481
Query: 268 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT------QVGSSGLRHLS 321
CL L+ +L LNL C L +++ L ++K LE D + G+ LR L
Sbjct: 482 CLHGLQMCKSLVWLNLSLCA----NLTDVSPLSSVKTLEEVDLGCCGNLKWGAGSLRRLP 537
Query: 322 GLTNLESINLSFTGISD----------GSLRKLAGLSSLKSLNLDARQITDTG------- 364
L ++L T I+D G + ++ G + L+ I G
Sbjct: 538 ---QLRILDLKNTVITDHCLGDVTYGGGVVSRMLGRCGMADLSFSRWSIRRGGNLVRLDL 594
Query: 365 --------LAALTSLTGLTHLDLFGAR 383
+A LTS+T L L G R
Sbjct: 595 SSCWGLTDIAHLTSITTLEELRFTGCR 621
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 91/349 (26%), Positives = 152/349 (43%), Gaps = 43/349 (12%)
Query: 43 GVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
+N K ++ +A + L ++DLS + V D L + C LQ L + C + L
Sbjct: 170 ALNFKCLEAVA-RLPRLRALDLSETLVNDKCLHAISACKTLQQLGLSSC--------KRL 220
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH--GGLVNLKGLMKLESL 160
R +S LT ++ +L +L+L C + G L L L +L+
Sbjct: 221 RDVSPLTQIA-------------------SLEELNLSHCENLKEVGALYRLSHLFRLDLR 261
Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
+ +T + LS T L L +S C + SG+A+L L+ L L+++
Sbjct: 262 GVH----LTYRVVYSLSKCTGLTELYVSSCEGL--SGVAWLSNLESLGDLDVQWRKNLKH 315
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNL 278
D L+ L L L+L+ +S++ S+ L+ L+L F + D + + + L
Sbjct: 316 TGDVLACLPLLRVLDLSGTSISNESLWNISESKLLRRLDLSFCGGVKD--ISPISDIVTL 373
Query: 279 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGIS 337
E LNL C EG+ L L NL L +S+T + S L ++S + +L ++LS G++
Sbjct: 374 EELNLKGCTSITEGVDKLGNLVNLHILNMSNTPLQSGFLYNISSIESLVELDLSSCWGVA 433
Query: 338 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
+ K AR I G+ AL L L L++ +TD
Sbjct: 434 SLDSSVQTAVRMRKGSYPLARHI--EGINALGRLPKLRLLNMSSTPVTD 480
>gi|47091555|ref|ZP_00229352.1| internalin [Listeria monocytogenes str. 4b H7858]
gi|254932714|ref|ZP_05266073.1| internalin [Listeria monocytogenes HPB2262]
gi|405748772|ref|YP_006672238.1| internalin F [Listeria monocytogenes ATCC 19117]
gi|417314456|ref|ZP_12101155.1| internalin, peptidoglycan bound protein (LPXTG motif) [Listeria
monocytogenes J1816]
gi|424822145|ref|ZP_18247158.1| Internalin [Listeria monocytogenes str. Scott A]
gi|47020232|gb|EAL10968.1| internalin [Listeria monocytogenes str. 4b H7858]
gi|293584270|gb|EFF96302.1| internalin [Listeria monocytogenes HPB2262]
gi|328467702|gb|EGF38754.1| internalin, peptidoglycan bound protein (LPXTG motif) [Listeria
monocytogenes J1816]
gi|332310825|gb|EGJ23920.1| Internalin [Listeria monocytogenes str. Scott A]
gi|404217972|emb|CBY69336.1| internalin F (LPXTG motif) [Listeria monocytogenes ATCC 19117]
Length = 823
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 94/303 (31%), Positives = 145/303 (47%), Gaps = 47/303 (15%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS--FRRNNAITAQGMKAFAGLINLVKLDL 138
+NL+ L+ N QI+D + LSNL L+ + N IT + A L NL +L L
Sbjct: 99 TNLEYLNLN-GNQITD-----ISPLSNLVKLTNLYIGTNKIT--DISALQNLTNLRELYL 150
Query: 139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGI 197
+ L L K+ SLN+ + + SD+ PLS +T L L ++ SKV D + I
Sbjct: 151 NEDNI--SDISPLANLTKMYSLNLGANHNL--SDLSPLSNMTGLNYLTVTESKVKDVTPI 206
Query: 198 AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD-DGCEKFSKIGSLKV 256
A L L L+L N + L++L SL Y Q++D +++ SLK+
Sbjct: 207 ANLTDLYSLSL-NYNQI----EDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKI 261
Query: 257 -------------------LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
L +G N+I+D + +K LT L+ LN+ S I D ++N
Sbjct: 262 GNNKITDLSPLANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISDISVLN-- 317
Query: 298 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 357
L L L L++ Q+G+ + + GLTNL ++ LS I+D +R LA LS + S + A
Sbjct: 318 NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD--IRPLASLSKMDSADF-A 374
Query: 358 RQI 360
Q+
Sbjct: 375 NQV 377
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 85/288 (29%), Positives = 125/288 (43%), Gaps = 56/288 (19%)
Query: 139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD---- 194
E+ I G ++ L LE LN+ N ITD + PLS L L +L I +K+TD
Sbjct: 87 EKVASIQG----IEYLTNLEYLNLN-GNQITD--ISPLSNLVKLTNLYIGTNKITDISAL 139
Query: 195 ----------------SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
S I+ L L K+ LNL G + L LS + L YL +
Sbjct: 140 QNLTNLRELYLNEDNISDISPLANLTKMYSLNL-GANHNLSDLSPLSNMTGLNYLTVTES 198
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN---------------- 282
++ D + + L L+L +N+I D + L LT+L
Sbjct: 199 KVKD--VTPIANLTDLYSLSLNYNQIED--ISPLASLTSLHYFTAYVNQITDITPVANMT 254
Query: 283 -LDSCGIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
L+S IG+ + +L+ L NL LE+ Q+ S + + LT L+ +N+ ISD
Sbjct: 255 RLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQI--SDINAVKDLTKLKMLNVGSNQISD 312
Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
S+ L LS L SL L+ Q+ + + + LT LT L L ITD
Sbjct: 313 ISV--LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD 358
>gi|85679297|gb|ABC72064.1| InlE [Listeria monocytogenes]
Length = 488
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 70/213 (32%), Positives = 105/213 (49%), Gaps = 38/213 (17%)
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
LTNL L+++ +++TD ++ L L K+T L L G P L +SAL L
Sbjct: 94 LTNLSELELTDNQITD--VSPLANLTKITELGLSGNP-----LKDVSALAGL-------- 138
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
SL ++L + +ITD + L GLTNL+ LNLD I D + L
Sbjct: 139 -------------KSLTTMHLIYTDITD--VTSLAGLTNLQELNLDINQITD--ISPLAA 181
Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
L NL+ L L TQV S L ++ L+ L +N + +SD + LA LSSL + L
Sbjct: 182 LTNLQTLSLGYTQV--SDLTPIANLSKLTILNAENSKVSD--ISPLASLSSLTEVYLREN 237
Query: 359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
QI+D ++ L ++ L+ ++L IT+ Y
Sbjct: 238 QISD--VSPLANIPNLSIIELTDQIITNQPVYY 268
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 70/122 (57%), Gaps = 17/122 (13%)
Query: 274 GLTNLESL----NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG-----LRHLSGLT 324
G+T +E + NL + D + +++ L NL + T++G SG + L+GL
Sbjct: 84 GITTIEGMQYLTNLSELELTDNQITDVSPLANLTKI----TELGLSGNPLKDVSALAGLK 139
Query: 325 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 384
+L +++L +T I+D + LAGL++L+ LNLD QITD ++ L +LT L L L ++
Sbjct: 140 SLTTMHLIYTDITD--VTSLAGLTNLQELNLDINQITD--ISPLAALTNLQTLSLGYTQV 195
Query: 385 TD 386
+D
Sbjct: 196 SD 197
Score = 46.2 bits (108), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 64/262 (24%), Positives = 115/262 (43%), Gaps = 46/262 (17%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
+Q + Q +N+ + D + + L L +DVTD + D +
Sbjct: 30 VQAAVIEQPTPINEIFTDPVVADNVKTL---LEKADVTDE----------VTQTDLDSIT 76
Query: 93 QIS--DGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL-DLERCTRIHGGLV 149
Q+S G+ + G+ LT+LS +T + + L NL K+ +L +
Sbjct: 77 QLSAKSAGITTIEGMQYLTNLSELE---LTDNQITDVSPLANLTKITELGLSGNPLKDVS 133
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQ---- 204
L GL L ++++ + + +D+ L+GLTNL+ L + +++TD S +A L LQ
Sbjct: 134 ALAGLKSLTTMHLIYTDI---TDVTSLAGLTNLQELNLDINQITDISPLAALTNLQTLSL 190
Query: 205 ---------------KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 249
KLT+LN E V + + L++L SL + L Q+SD +
Sbjct: 191 GYTQVSDLTPIANLSKLTILNAENSKV--SDISPLASLSSLTEVYLRENQISD--VSPLA 246
Query: 250 KIGSLKVLNLGFNEITDECLVH 271
I +L ++ L IT++ + +
Sbjct: 247 NIPNLSIIELTDQIITNQPVYY 268
>gi|406830084|ref|ZP_11089678.1| hypothetical protein SpalD1_00552 [Schlesneria paludicola DSM
18645]
Length = 249
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 74/136 (54%)
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
+NLNR + +D + L+ L+L ++++DE L L L+ L L L+ GI D G
Sbjct: 92 VNLNRGKNTDRVVPSLCLLKHLETLDLELSDVSDEGLKSLGRLSQLRGLGLNHTGIADIG 151
Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
L L L L+ L L T++ +G++HL +++L+ + LS T +SD + L L L+
Sbjct: 152 LGYLRPLTGLQGLHLDGTKITDAGVKHLQSMSHLQILKLSNTLVSDAGVEVLFDLHELQI 211
Query: 353 LNLDARQITDTGLAAL 368
LNL ++T G +L
Sbjct: 212 LNLAESRVTRRGFVSL 227
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 78/148 (52%)
Query: 247 KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 306
+F + V+NL + TD + L L +LE+L+L+ + DEGL +L L L+ L
Sbjct: 82 QFPLFDRITVVNLNRGKNTDRVVPSLCLLKHLETLDLELSDVSDEGLKSLGRLSQLRGLG 141
Query: 307 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 366
L+ T + GL +L LT L+ ++L T I+D ++ L +S L+ L L ++D G+
Sbjct: 142 LNHTGIADIGLGYLRPLTGLQGLHLDGTKITDAGVKHLQSMSHLQILKLSNTLVSDAGVE 201
Query: 367 ALTSLTGLTHLDLFGARITDSGAAYLRS 394
L L L L+L +R+T G LR
Sbjct: 202 VLFDLHELQILNLAESRVTRRGFVSLRQ 229
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 70/128 (54%)
Query: 205 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 264
++T++NL T + SL L L L+L +SD+G + ++ L+ L L I
Sbjct: 88 RITVVNLNRGKNTDRVVPSLCLLKHLETLDLELSDVSDEGLKSLGRLSQLRGLGLNHTGI 147
Query: 265 TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT 324
D L +L+ LT L+ L+LD I D G+ +L + +L+ L+LS+T V +G+ L L
Sbjct: 148 ADIGLGYLRPLTGLQGLHLDGTKITDAGVKHLQSMSHLQILKLSNTLVSDAGVEVLFDLH 207
Query: 325 NLESINLS 332
L+ +NL+
Sbjct: 208 ELQILNLA 215
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 66/120 (55%), Gaps = 1/120 (0%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
L LE+L+++ + ++D +K L L+ L+ L ++ + + D G+ YL+ L L L+L+G
Sbjct: 110 LKHLETLDLELSD-VSDEGLKSLGRLSQLRGLGLNHTGIADIGLGYLRPLTGLQGLHLDG 168
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
+T A + L ++ L L L+ +SD G E + L++LNL + +T V L+
Sbjct: 169 TKITDAGVKHLQSMSHLQILKLSNTLVSDAGVEVLFDLHELQILNLAESRVTRRGFVSLR 228
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 87/194 (44%), Gaps = 5/194 (2%)
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
+ F L L+ ER R+ + ++ G E +W +T S +
Sbjct: 36 IPVFLALTILIPFLSER--RVARHVESMGGTFSTEYFGPEW---LTPSLRTQFPLFDRIT 90
Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
+ ++ K TD + L L+ L L+LE V+ L SL L L L LN ++D
Sbjct: 91 VVNLNRGKNTDRVVPSLCLLKHLETLDLELSDVSDEGLKSLGRLSQLRGLGLNHTGIADI 150
Query: 244 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 303
G + L+ L+L +ITD + HL+ +++L+ L L + + D G+ L L L+
Sbjct: 151 GLGYLRPLTGLQGLHLDGTKITDAGVKHLQSMSHLQILKLSNTLVSDAGVEVLFDLHELQ 210
Query: 304 CLELSDTQVGSSGL 317
L L++++V G
Sbjct: 211 ILNLAESRVTRRGF 224
>gi|290986035|ref|XP_002675730.1| predicted protein [Naegleria gruberi]
gi|284089328|gb|EFC42986.1| predicted protein [Naegleria gruberi]
Length = 483
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 91/343 (26%), Positives = 153/343 (44%), Gaps = 46/343 (13%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLD-------FNFCIQISD 96
+ D+ + +IA+ L + + V D G+ L+ + L LD + +Q+ D
Sbjct: 146 IGDEGVTLIANSLKQLTKLGIGQVGVGDEGVRQLEKLTQLTELDASCNDFTISVLVQVID 205
Query: 97 GGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL----- 151
L+ L+ LS + I + MK L L L + RI G + L
Sbjct: 206 NSLKQLKTLSVYSC-------NIEDEHMKDITTLSQLTSLSV-GINRITGNSLKLIGYSM 257
Query: 152 KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
K L LE N N I D+ + L L LK L IS +K++ G ++K + +L +L
Sbjct: 258 KDLTYLEVAN----NEIGDAGTEYLCNLKKLKELSISSNKISQLGFEHIKSMDQLRILQC 313
Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK-IGSLKVLNLGFNEITDECLV 270
+ + ++S L +L ++ C+++ + E SK + SL LNL N I D V
Sbjct: 314 NNTNIMNQ-VSTMSHLETLVVIS--DCKINIEIFESMSKNMKSLTKLNLYKNAINDMDFV 370
Query: 271 H-LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 329
+ + +L L+L+SC I D + ++ + NL+ L + + G++HL+ LT+L +
Sbjct: 371 RFIASIQHLRELHLESCSINDNSVEIISSIQNLRGLFVPSNDITDGGVKHLTKLTSLREL 430
Query: 330 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 372
++ I GL +K I +GL LTSLT
Sbjct: 431 DIYCNPI---------GLEGVK--------IISSGLKGLTSLT 456
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 125/252 (49%), Gaps = 16/252 (6%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL-KGLQKLTLLNLE 212
L +L++L++ CN I D MK ++ L+ L SL + +++T + + + ++ LT L +
Sbjct: 208 LKQLKTLSVYSCN-IEDEHMKDITTLSQLTSLSVGINRITGNSLKLIGYSMKDLTYLEVA 266
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
+ A + L L L L+++ ++S G E + L++L I ++ +
Sbjct: 267 NNEIGDAGTEYLCNLKKLKELSISSNKISQLGFEHIKSMDQLRILQCNNTNIMNQ----V 322
Query: 273 KGLTNLESLNLDS-CGIGDEGLVNLT-GLCNLKCLELSDTQVGSSG-LRHLSGLTNLESI 329
+++LE+L + S C I E +++ + +L L L + +R ++ + +L +
Sbjct: 323 STMSHLETLVVISDCKINIEIFESMSKNMKSLTKLNLYKNAINDMDFVRFIASIQHLREL 382
Query: 330 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF-------GA 382
+L I+D S+ ++ + +L+ L + + ITD G+ LT LT L LD++ G
Sbjct: 383 HLESCSINDNSVEIISSIQNLRGLFVPSNDITDGGVKHLTKLTSLRELDIYCNPIGLEGV 442
Query: 383 RITDSGAAYLRS 394
+I SG L S
Sbjct: 443 KIISSGLKGLTS 454
>gi|254854137|ref|ZP_05243485.1| internalin [Listeria monocytogenes FSL R2-503]
gi|258607527|gb|EEW20135.1| internalin [Listeria monocytogenes FSL R2-503]
Length = 824
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 94/303 (31%), Positives = 145/303 (47%), Gaps = 47/303 (15%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS--FRRNNAITAQGMKAFAGLINLVKLDL 138
+NL+ L+ N QI+D + LSNL L+ + N IT + A L NL +L L
Sbjct: 99 TNLEYLNLN-GNQITD-----ISPLSNLVKLTNLYIGTNKIT--DISALQNLTNLRELYL 150
Query: 139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGI 197
+ L L K+ SLN+ + + SD+ PLS +T L L ++ SKV D + I
Sbjct: 151 NEDNI--SDISPLANLTKMYSLNLGANHNL--SDLSPLSNMTGLNYLTVTESKVKDVTPI 206
Query: 198 AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD-DGCEKFSKIGSLKV 256
A L L L+L N + L++L SL Y Q++D +++ SLK+
Sbjct: 207 ANLTDLYSLSL-NYNQI----EDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKI 261
Query: 257 -------------------LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
L +G N+I+D + +K LT L+ LN+ S I D ++N
Sbjct: 262 GNNKITDLSPLANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISDISVLN-- 317
Query: 298 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 357
L L L L++ Q+G+ + + GLTNL ++ LS I+D +R LA LS + S + A
Sbjct: 318 NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD--IRPLASLSKMDSADF-A 374
Query: 358 RQI 360
Q+
Sbjct: 375 NQV 377
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 85/288 (29%), Positives = 125/288 (43%), Gaps = 56/288 (19%)
Query: 139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD---- 194
E+ I G ++ L LE LN+ N ITD + PLS L L +L I +K+TD
Sbjct: 87 EKVASIQG----IEYLTNLEYLNLN-GNQITD--ISPLSNLVKLTNLYIGTNKITDISAL 139
Query: 195 ----------------SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
S I+ L L K+ LNL G + L LS + L YL +
Sbjct: 140 QNLTNLRELYLNEDNISDISPLANLTKMYSLNL-GANHNLSDLSPLSNMTGLNYLTVTES 198
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN---------------- 282
++ D + + L L+L +N+I D + L LT+L
Sbjct: 199 KVKD--VTPIANLTDLYSLSLNYNQIED--ISPLASLTSLHYFTAYVNQITDITPVANMT 254
Query: 283 -LDSCGIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
L+S IG+ + +L+ L NL LE+ Q+ S + + LT L+ +N+ ISD
Sbjct: 255 RLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQI--SDINAVKDLTKLKMLNVGSNQISD 312
Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
S+ L LS L SL L+ Q+ + + + LT LT L L ITD
Sbjct: 313 ISV--LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD 358
>gi|417316691|ref|ZP_12103332.1| internalin, peptidoglycan bound protein (LPXTG motif) [Listeria
monocytogenes J1-220]
gi|328476023|gb|EGF46741.1| internalin, peptidoglycan bound protein (LPXTG motif) [Listeria
monocytogenes J1-220]
Length = 830
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 94/303 (31%), Positives = 145/303 (47%), Gaps = 47/303 (15%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS--FRRNNAITAQGMKAFAGLINLVKLDL 138
+NL+ L+ N QI+D + LSNL L+ + N IT + A L NL +L L
Sbjct: 99 TNLEYLNLN-GNQITD-----ISPLSNLVKLTNLYIGTNKIT--DISALQNLTNLRELYL 150
Query: 139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGI 197
+ L L K+ SLN+ + + SD+ PLS +T L L ++ SKV D + I
Sbjct: 151 NEDNI--SDISPLANLTKMYSLNLGANHNL--SDLSPLSNMTGLNYLTVTESKVKDVTPI 206
Query: 198 AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD-DGCEKFSKIGSLKV 256
A L L L+L N + L++L SL Y Q++D +++ SLK+
Sbjct: 207 ANLTDLYSLSL-NYNQI----EDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKI 261
Query: 257 -------------------LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
L +G N+I+D + +K LT L+ LN+ S I D ++N
Sbjct: 262 GNNKITDLSPLANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISDISVLN-- 317
Query: 298 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 357
L L L L++ Q+G+ + + GLTNL ++ LS I+D +R LA LS + S + A
Sbjct: 318 NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD--IRPLASLSKMDSADF-A 374
Query: 358 RQI 360
Q+
Sbjct: 375 NQV 377
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 85/288 (29%), Positives = 125/288 (43%), Gaps = 56/288 (19%)
Query: 139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD---- 194
E+ I G ++ L LE LN+ N ITD + PLS L L +L I +K+TD
Sbjct: 87 EKVASIQG----IEYLTNLEYLNLN-GNQITD--ISPLSNLVKLTNLYIGTNKITDISAL 139
Query: 195 ----------------SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
S I+ L L K+ LNL G + L LS + L YL +
Sbjct: 140 QNLTNLRELYLNEDNISDISPLANLTKMYSLNL-GANHNLSDLSPLSNMTGLNYLTVTES 198
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN---------------- 282
++ D + + L L+L +N+I D + L LT+L
Sbjct: 199 KVKD--VTPIANLTDLYSLSLNYNQIED--ISPLASLTSLHYFTAYVNQITDITPVANMT 254
Query: 283 -LDSCGIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
L+S IG+ + +L+ L NL LE+ Q+ S + + LT L+ +N+ ISD
Sbjct: 255 RLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQI--SDINAVKDLTKLKMLNVGSNQISD 312
Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
S+ L LS L SL L+ Q+ + + + LT LT L L ITD
Sbjct: 313 ISV--LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD 358
>gi|326507660|dbj|BAK03223.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 454
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 97/352 (27%), Positives = 163/352 (46%), Gaps = 49/352 (13%)
Query: 82 NLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
+L+ LD + C ++ G+ + + L NL L+ +TA K F L L L LE
Sbjct: 41 SLRVLDMSTCRNVTHTGVSSVVKALPNLLELNLSYCCNVTASMGKCFQMLPKLQTLKLEG 100
Query: 141 CTRIHGGLVNLK-GLMKLESLNIKWCNCITDSDMK-PLSGLTNLKSLQISCSK-VTDSGI 197
C + GL ++ + L L++ C+ +TD+D+ +S L NL L I+C++ +TD +
Sbjct: 101 CKFMADGLKHIGISCVSLRELSLSKCSGVTDTDLSFVVSRLKNLLKLDITCNRNITDVSL 160
Query: 198 AYL-KGLQKLTLLNLEGCPVTAACLDSLSALGS----LFYLNLNRCQLSDDGCEKFSKIG 252
A + L L +E C ++ + L +G L L++ L D+G + S
Sbjct: 161 AAITSSCHSLISLRIESCSHFSS--EGLRLIGKRCCHLEELDITDSDLDDEGLKALSGCS 218
Query: 253 SLKVLNLGF-NEITDECLVHL-KGLTNLESLNL-DSCGIGDEGLVNLTGLCNL------- 302
L L +G I+D+ L+H+ K L ++L S GI DEG+ + C +
Sbjct: 219 KLSSLKIGICMRISDQGLIHIGKSCPELRDIDLYRSGGISDEGVTQIAQGCPMLESINLS 278
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLE---SINLSFTGISDGSL--RKLAGL---------- 347
C E++D + S L + L LE ++S G+S+ ++ R LA L
Sbjct: 279 YCTEITDVSLMS--LSKCAKLNTLEIRGCPSISSAGLSEIAIGCRLLAKLDVKKCFAIND 336
Query: 348 ----------SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG-ARITDSG 388
SL+ +NL +TD GL +L+S+ GL ++ + A IT +G
Sbjct: 337 VGMFFLSQFSHSLRQINLSYCSVTDIGLLSLSSICGLQNMTIVHLAGITPNG 388
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 123/271 (45%), Gaps = 40/271 (14%)
Query: 13 ELVYSRCLTEVSLEAFRDC--ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVT 70
++ +R +T+VSL A +L L + + + + +I + L +D++ SD+
Sbjct: 148 DITCNRNITDVSLAAITSSCHSLISLRIESCSHFSSEGLRLIGKRCCHLEELDITDSDLD 207
Query: 71 DSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFAG 129
D GL L CS L SL C++ISD GL H+ + L + R+ I+ +G+ A
Sbjct: 208 DEGLKALSGCSKLSSLKIGICMRISDQGLIHIGKSCPELRDIDLYRSGGISDEGVTQIA- 266
Query: 130 LINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS- 188
+G LES+N+ +C ITD + LS L +L+I
Sbjct: 267 ----------------------QGCPMLESINLSYCTEITDVSLMSLSKCAKLNTLEIRG 304
Query: 189 CSKVTDSGIAYLK-GLQKLTLLNLEGC-PVTAACLDSLSALG-SLFYLNLNRCQLSDDGC 245
C ++ +G++ + G + L L+++ C + + LS SL +NL+ C ++D G
Sbjct: 305 CPSISSAGLSEIAIGCRLLAKLDVKKCFAINDVGMFFLSQFSHSLRQINLSYCSVTDIGL 364
Query: 246 EKFSKIGSLKVLNLGFNEITDECLVHLKGLT 276
S I L+ + +VHL G+T
Sbjct: 365 LSLSSICGLQNMT----------IVHLAGIT 385
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 93/312 (29%), Positives = 138/312 (44%), Gaps = 57/312 (18%)
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIH----GGLVNLKGLMKLESLNIKWCNCITDSDMK 174
I+ + A L NL L L C I GL N + L L++ C +T + +
Sbjct: 1 ISKDCLPAIMELPNLEVLALVGCVGIDDDALSGLEN-ESSKSLRVLDMSTCRNVTHTGVS 59
Query: 175 PL-SGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---- 228
+ L NL L +S C VT S + L KL L LEGC A D L +G
Sbjct: 60 SVVKALPNLLELNLSYCCNVTASMGKCFQMLPKLQTLKLEGCKFMA---DGLKHIGISCV 116
Query: 229 SLFYLNLNRCQLSDDGCEKF--SKIGSLKVLNLGFNE-ITDECLVHLKGLTN----LESL 281
SL L+L++C D F S++ +L L++ N ITD V L +T+ L SL
Sbjct: 117 SLRELSLSKCSGVTDTDLSFVVSRLKNLLKLDITCNRNITD---VSLAAITSSCHSLISL 173
Query: 282 NLDSCG-IGDEGLVNLTG--LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT---- 334
++SC EGL L G C+L+ L+++D+ + GL+ LSG + L S+ +
Sbjct: 174 RIESCSHFSSEGL-RLIGKRCCHLEELDITDSDLDDEGLKALSGCSKLSSLKIGICMRIS 232
Query: 335 -----------------------GISDGSLRKLA-GLSSLKSLNLD-ARQITDTGLAALT 369
GISD + ++A G L+S+NL +ITD L +L+
Sbjct: 233 DQGLIHIGKSCPELRDIDLYRSGGISDEGVTQIAQGCPMLESINLSYCTEITDVSLMSLS 292
Query: 370 SLTGLTHLDLFG 381
L L++ G
Sbjct: 293 KCAKLNTLEIRG 304
>gi|406833864|ref|ZP_11093458.1| hypothetical protein SpalD1_19557 [Schlesneria paludicola DSM
18645]
Length = 310
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 72/233 (30%), Positives = 113/233 (48%), Gaps = 20/233 (8%)
Query: 162 IKWCNCITDSDMKP-LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 220
+++ +C ++ P L+ L +L+ L SK+ DS A
Sbjct: 85 VQFIDCKIPGEVFPVLASLNHLEHLDFYNSKIGDSRFG-------------------DAE 125
Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 280
L ++ L SL +N+ Q++DDG ++ + L+ L L +ITD L HL L L
Sbjct: 126 LKLMAGLKSLRSINVVLSQVTDDGLKELESMDRLESLALSSTKITDAGLRHLLRLKKLSR 185
Query: 281 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 340
L L + DEGL ++ L +L L+L T++ GL+ L L LE ++L T IS+
Sbjct: 186 LQLAQTAVSDEGLKTISSLHSLSLLDLYGTRITDQGLKSLELLRKLEYLDLGGTAISNAG 245
Query: 341 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
L L L +L ++ + QI D+GL LTS++ L +L L A+ T G A R
Sbjct: 246 LAHLGVLPNLVTVGVRGTQIGDSGLEQLTSISSLRYLYLNMAQTTKEGRADFR 298
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 95/196 (48%), Gaps = 6/196 (3%)
Query: 59 LLSVDLSGSDVTDS--GLIHLKDCSNLQSL-DFNFCI-QISDGGLEHLRGLSNLTSLSFR 114
L +D S + DS G LK + L+SL N + Q++D GL+ L + L SL+
Sbjct: 106 LEHLDFYNSKIGDSRFGDAELKLMAGLKSLRSINVVLSQVTDDGLKELESMDRLESLALS 165
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
+ IT G++ L L +L L + GL + + SL + ITD +K
Sbjct: 166 -STKITDAGLRHLLRLKKLSRLQLAQTAVSDEGLKTIS-SLHSLSLLDLYGTRITDQGLK 223
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
L L L+ L + + ++++G+A+L L L + + G + + L+ L+++ SL YL
Sbjct: 224 SLELLRKLEYLDLGGTAISNAGLAHLGVLPNLVTVGVRGTQIGDSGLEQLTSISSLRYLY 283
Query: 235 LNRCQLSDDGCEKFSK 250
LN Q + +G F +
Sbjct: 284 LNMAQTTKEGRADFRR 299
>gi|340057619|emb|CCC51965.1| conserved hypothetical protein [Trypanosoma vivax Y486]
Length = 872
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 88/326 (26%), Positives = 154/326 (47%), Gaps = 37/326 (11%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TD GL+ ++ C++LQ L + C+++ + L L L +L+ RN + ++G K A
Sbjct: 289 ITDEGLLPVRKCTSLQHLTLDNCVRLR--SINCLGSLHRLHTLTVSRNR-MPSEGFKGLA 345
Query: 129 GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
L L L RI L ++ G+ L L++ N +TD L+ + L+ L+++
Sbjct: 346 NLRGLEVLRFAVLNRILT-LESIAGIQCLRELDLTD-NWLTDEGCAFLAHCSQLEHLKLA 403
Query: 189 -CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 247
C V+D + +++ L L L+L V LDSL + SL L+L C+
Sbjct: 404 YCRSVSD--VRWVRALTSLQTLDLSYTSVLNCFLDSLRSCSSLEELSLAYCK-------- 453
Query: 248 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 307
V+++ F + GL L+SL++ + + GL ++ L L L
Sbjct: 454 -------DVVDISF----------VVGLNCLKSLDVSGTCVDESGLSSVGKCPALTNLSL 496
Query: 308 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLA 366
+ + +GL+ + L L ++N TG+ DG++ + L+ L+ + +TD +
Sbjct: 497 RECR-QVAGLKFVGALKQLINLNAEGTGMLDGNIDHITCCQKLEVLSFRNCPFLTD--VR 553
Query: 367 ALTSLTGLTHLDLFGARITDSGAAYL 392
L L GL LDL GA +TD G + L
Sbjct: 554 CLKDLGGLKALDLAGAYVTDEGVSTL 579
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 101/438 (23%), Positives = 178/438 (40%), Gaps = 102/438 (23%)
Query: 33 LQDLCLGQYPGVND-KWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC 91
L+ L L V+D +W+ + +SL ++DLS + V + L L+ CS+L+ L +C
Sbjct: 397 LEHLKLAYCRSVSDVRWVRAL----TSLQTLDLSYTSVLNCFLDSLRSCSSLEELSLAYC 452
Query: 92 IQISD----------------------GGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAG 129
+ D GL + LT+LS R + G+K
Sbjct: 453 KDVVDISFVVGLNCLKSLDVSGTCVDESGLSSVGKCPALTNLSLRECRQVA--GLKFVGA 510
Query: 130 LINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISC 189
L L+ L+ E + G + ++ KLE L+ + NC +D++ L L LK+L ++
Sbjct: 511 LKQLINLNAEGTGMLDGNIDHITCCQKLEVLSFR--NCPFLTDVRCLKDLGGLKALDLAG 568
Query: 190 SKVTDSGIAYLKGLQKLTLLNLEGC----------------PVTAACLDSLSALGSLFYL 233
+ VTD G++ L L +++ GC V A ++ ++ G L
Sbjct: 569 AYVTDEGVSTLSHCTSLESIDVSGCCLITHFGFLIGLTKLRNVVANGMNVVNVDGLLKSP 628
Query: 234 NLNRCQLSDDGCEKFSKIGSLK-------------VLNLGFNEITDEC-------LVHLK 273
++ R L + + S +G + + N+G N + + C L
Sbjct: 629 SMERVSLVES--RRLSFVGHVAAARLTELSVENSNISNVGINAVLEGCYSLQRLSLQQCP 686
Query: 274 GLTNLESLNL---------DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT 324
+++L+ ++L S + E + + NL+ L++SD + + L L
Sbjct: 687 AISDLQGVSLLPKLQELLLRSTAVSRESVAQIAACENLRRLQISDC-ADVTDVNILCSLQ 745
Query: 325 NLESINLSFTGISDGSLRKLAGLSSLKSLNL-DAR----------------------QIT 361
+L ++LS T ++ G ++ LA S+LK LNL D R +T
Sbjct: 746 SLVDLDLSKTNVTTGGVKGLAQCSALKKLNLSDCRFVTNINCLGKLPVLRELYLCRTSVT 805
Query: 362 DTGLAALTSLTGLTHLDL 379
D G+A L L L L
Sbjct: 806 DRGIAGLQHCRQLETLTL 823
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 73/272 (26%), Positives = 121/272 (44%), Gaps = 50/272 (18%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L ++DL+G+ VTD G+ L C++L+S+D + C I+ G L GL+ L ++ N
Sbjct: 561 LKALDLAGAYVTDEGVSTLSHCTSLESIDVSGCCLITHFGF--LIGLTKLRNVVANGMNV 618
Query: 119 ITAQGM----------------KAFAGLI---NLVKLDLERCTRIHGGL-VNLKGLMKLE 158
+ G+ +F G + L +L +E + G+ L+G L+
Sbjct: 619 VNVDGLLKSPSMERVSLVESRRLSFVGHVAAARLTELSVENSNISNVGINAVLEGCYSLQ 678
Query: 159 SLNIKWCNCITD----------------------SDMKPLSGLTNLKSLQIS-CSKVTDS 195
L+++ C I+D + ++ NL+ LQIS C+ VTD
Sbjct: 679 RLSLQQCPAISDLQGVSLLPKLQELLLRSTAVSRESVAQIAACENLRRLQISDCADVTDV 738
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSL 254
I L LQ L L+L VT + L+ +L LNL+ C+ +++ C K+ L
Sbjct: 739 NI--LCSLQSLVDLDLSKTNVTTGGVKGLAQCSALKKLNLSDCRFVTNINC--LGKLPVL 794
Query: 255 KVLNLGFNEITDECLVHLKGLTNLESLNLDSC 286
+ L L +TD + L+ LE+L L C
Sbjct: 795 RELYLCRTSVTDRGIAGLQHCRQLETLTLTKC 826
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 84/328 (25%), Positives = 152/328 (46%), Gaps = 21/328 (6%)
Query: 69 VTDSGLIHLKDCSN-LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR--RNNAITA---Q 122
V S +IHL + ++SLD C G +R S + LS R R + ++
Sbjct: 167 VLTSEMIHLISMNRKVESLDLRQCY-----GETEMRLCSVTSILSNRLVRRHGLSTFYLS 221
Query: 123 GMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNL 182
G A L +L L+L + ++ + L L I C + + ++ L+ + L
Sbjct: 222 GTTALGVLTHLHSLELHSVPLSNELMLYFSQCLSLRHLIIDSCRGL--ASLECLTAIPGL 279
Query: 183 KSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
+L + S +TD G+ ++ L L L+ C V ++ L +L L L ++R ++
Sbjct: 280 LNLSLLNSPITDEGLLPVRKCTSLQHLTLDNC-VRLRSINCLGSLHRLHTLTVSRNRMPS 338
Query: 243 DGCEKFSKIGSLKVLNLG-FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN 301
+G + + + L+VL N I L + G+ L L+L + DEG L
Sbjct: 339 EGFKGLANLRGLEVLRFAVLNRILT--LESIAGIQCLRELDLTDNWLTDEGCAFLAHCSQ 396
Query: 302 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD-ARQI 360
L+ L+L+ + S +R + LT+L++++LS+T + + L L SSL+ L+L + +
Sbjct: 397 LEHLKLAYCR-SVSDVRWVRALTSLQTLDLSYTSVLNCFLDSLRSCSSLEELSLAYCKDV 455
Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSG 388
D ++ + L L LD+ G + +SG
Sbjct: 456 VD--ISFVVGLNCLKSLDVSGTCVDESG 481
>gi|300765671|ref|ZP_07075649.1| internalin [Listeria monocytogenes FSL N1-017]
gi|404279969|ref|YP_006680867.1| internalin F [Listeria monocytogenes SLCC2755]
gi|404285784|ref|YP_006692370.1| internalin F [Listeria monocytogenes serotype 7 str. SLCC2482]
gi|300513659|gb|EFK40728.1| internalin [Listeria monocytogenes FSL N1-017]
gi|404226604|emb|CBY48009.1| internalin F (LPXTG motif) [Listeria monocytogenes SLCC2755]
gi|404244713|emb|CBY02938.1| internalin F (LPXTG motif) [Listeria monocytogenes serotype 7 str.
SLCC2482]
Length = 823
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 94/303 (31%), Positives = 145/303 (47%), Gaps = 47/303 (15%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS--FRRNNAITAQGMKAFAGLINLVKLDL 138
+NL+ L+ N QI+D + LSNL L+ + N IT + A L NL +L L
Sbjct: 99 TNLEYLNLN-GNQITD-----ISPLSNLVKLTNLYIGTNKIT--DISALQNLTNLRELYL 150
Query: 139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGI 197
+ L L K+ SLN+ + + SD+ PLS +T L L ++ SKV D + I
Sbjct: 151 NEDNI--SDISPLANLTKMYSLNLGANHNL--SDLSPLSNMTGLNYLTVTESKVKDVTPI 206
Query: 198 AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD-DGCEKFSKIGSLKV 256
A L L L+L N + L++L SL Y Q++D +++ SLK+
Sbjct: 207 ANLTDLYSLSL-NYNQI----EDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKI 261
Query: 257 -------------------LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
L +G N+I+D + +K LT L+ LN+ S I D ++N
Sbjct: 262 GNNKITDLSPLANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISDISVLN-- 317
Query: 298 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 357
L L L L++ Q+G+ + + GLTNL ++ LS I+D +R LA LS + S + A
Sbjct: 318 NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD--IRPLASLSKMDSADF-A 374
Query: 358 RQI 360
Q+
Sbjct: 375 NQV 377
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 85/288 (29%), Positives = 125/288 (43%), Gaps = 56/288 (19%)
Query: 139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD---- 194
E+ I G ++ L LE LN+ N ITD + PLS L L +L I +K+TD
Sbjct: 87 EKVASIQG----IEYLTNLEYLNLN-GNQITD--ISPLSNLVKLTNLYIGTNKITDISAL 139
Query: 195 ----------------SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
S I+ L L K+ LNL G + L LS + L YL +
Sbjct: 140 QNLTNLRELYLNEDNISDISPLANLTKMYSLNL-GANHNLSDLSPLSNMTGLNYLTVTES 198
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN---------------- 282
++ D + + L L+L +N+I D + L LT+L
Sbjct: 199 KVKD--VTPIANLTDLYSLSLNYNQIED--ISPLASLTSLHYFTAYVNQITDITPVANMT 254
Query: 283 -LDSCGIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
L+S IG+ + +L+ L NL LE+ Q+ S + + LT L+ +N+ ISD
Sbjct: 255 RLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQI--SDINAVKDLTKLKMLNVGSNQISD 312
Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
S+ L LS L SL L+ Q+ + + + LT LT L L ITD
Sbjct: 313 ISV--LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD 358
>gi|242074072|ref|XP_002446972.1| hypothetical protein SORBIDRAFT_06g026090 [Sorghum bicolor]
gi|241938155|gb|EES11300.1| hypothetical protein SORBIDRAFT_06g026090 [Sorghum bicolor]
Length = 1164
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 99/347 (28%), Positives = 145/347 (41%), Gaps = 20/347 (5%)
Query: 55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLD-----FNFCIQISDGGLEHLRGLSNLT 109
Q ++LL + L G+ + + + C LQ LD F + S GGL LR
Sbjct: 372 QLTALLELRLGGNAFSGAVPAEIGRCGALQVLDLEDNHFTGDVPSSLGGLPRLRE----- 426
Query: 110 SLSFRRNNAITAQGMKAFAGLINLVKLDLER---CTRIHGGLVNLKGLMKLESLNIKWCN 166
++ N + Q +F L L L ++R R+ G L L L L+ N
Sbjct: 427 --AYLGGNTFSGQIPASFGNLSWLEALSIQRNRLTGRLSGELFRLGNLTFLDLSE----N 480
Query: 167 CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLS 225
+T + L L+SL +S + + + LQ L +L+L G ++ L
Sbjct: 481 NLTGEIPPAIGNLLALQSLNLSGNAFSGHIPTTIGNLQNLRVLDLSGQKNLSGNVPAELF 540
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
L L Y++ S D E FS + SL+ LNL N T L +L+ L+
Sbjct: 541 GLPQLQYVSFADNSFSGDVPEGFSSLWSLRNLNLSGNSFTGSIPATYGYLPSLQVLSASH 600
Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 345
I E L NL LELS Q+ S LS L LE ++LS+ +S +++
Sbjct: 601 NHISGELPAELANCSNLTVLELSGNQLTGSIPSDLSRLDELEELDLSYNQLSGKIPPEIS 660
Query: 346 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
SSL L LD I A+L +L+ L LDL +T S A L
Sbjct: 661 NCSSLALLKLDDNHIGGDIPASLANLSKLQTLDLSSNNLTGSIPASL 707
Score = 39.7 bits (91), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 75/162 (46%), Gaps = 7/162 (4%)
Query: 225 SALGSLFYL---NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL-VHLKGLTNLES 280
ALGSL YL +L LS +++ SL+ + L N ++ L LTNL++
Sbjct: 102 PALGSLPYLERLSLRSNDLSGAIPASLARVTSLRAVFLQSNSLSGPIPQSFLANLTNLDT 161
Query: 281 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT-NLESINLSFTGISDG 339
D G G V ++ +LK L+LS + ++S T NL+ +NLSF +
Sbjct: 162 F--DVSGNLLSGPVPVSFPPSLKYLDLSSNAFSGTIPANISASTANLQFLNLSFNRLRGT 219
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 381
L L +L L LD + T AAL + + L HL L G
Sbjct: 220 VPASLGNLQNLHYLWLDGNLLEGTIPAALANCSALLHLSLQG 261
Score = 39.3 bits (90), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 83/204 (40%)
Query: 180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 239
+L+ + + +K+ +L G LTLL+L G T ++ L +L L L
Sbjct: 326 ADLQVVDLGGNKLAGPFPTWLAGAGGLTLLDLSGNAFTGELPPAVGQLTALLELRLGGNA 385
Query: 240 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 299
S + + G+L+VL+L N T + L GL L L + + L
Sbjct: 386 FSGAVPAEIGRCGALQVLDLEDNHFTGDVPSSLGGLPRLREAYLGGNTFSGQIPASFGNL 445
Query: 300 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 359
L+ L + ++ L L NL ++LS ++ + L +L+SLNL
Sbjct: 446 SWLEALSIQRNRLTGRLSGELFRLGNLTFLDLSENNLTGEIPPAIGNLLALQSLNLSGNA 505
Query: 360 ITDTGLAALTSLTGLTHLDLFGAR 383
+ + +L L LDL G +
Sbjct: 506 FSGHIPTTIGNLQNLRVLDLSGQK 529
>gi|334116578|ref|ZP_08490670.1| leucine-rich repeat-containing protein [Microcoleus vaginatus
FGP-2]
gi|333461398|gb|EGK90003.1| leucine-rich repeat-containing protein [Microcoleus vaginatus
FGP-2]
Length = 576
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 57/146 (39%), Positives = 83/146 (56%), Gaps = 10/146 (6%)
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
+DD E + S+ L L ++ ITD + L+ LTNL +LN ++ I D + +L L
Sbjct: 42 TDDAQEAEQILSSMTELALSYDHITD--ISFLRWLTNLTTLNFENNKITD--ISSLGSLT 97
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
NL L LS Q+ + + L LTNL +++LS+ I D S L L++L LNL+ I
Sbjct: 98 NLTRLNLSYNQI--TDISFLGSLTNLTTLDLSYNRIIDIS--SLGSLTNLTRLNLNINTI 153
Query: 361 TDTGLAALTSLTGLTHLDLFGARITD 386
TD +++L SLT LT LDL +ITD
Sbjct: 154 TD--ISSLGSLTNLTRLDLLSNQITD 177
Score = 38.5 bits (88), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 65/136 (47%), Gaps = 28/136 (20%)
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCTRIH--GGLVNLK----- 152
LR L+NLT+L+F NN IT + + L NL +L+L + T I G L NL
Sbjct: 71 LRWLTNLTTLNFE-NNKIT--DISSLGSLTNLTRLNLSYNQITDISFLGSLTNLTTLDLS 127
Query: 153 -----------GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLK 201
L L LN+ N T +D+ L LTNL L + +++TD ++ L
Sbjct: 128 YNRIIDISSLGSLTNLTRLNL---NINTITDISSLGSLTNLTRLDLLSNQITD--LSSLG 182
Query: 202 GLQKLTLLNLEGCPVT 217
L LT L+L P+T
Sbjct: 183 SLTNLTRLDLSSNPIT 198
>gi|290979178|ref|XP_002672311.1| predicted protein [Naegleria gruberi]
gi|284085887|gb|EFC39567.1| predicted protein [Naegleria gruberi]
Length = 347
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 76/333 (22%), Positives = 143/333 (42%), Gaps = 42/333 (12%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVT---DSGLIHLKDCSNLQSLDFNFCIQISDGGLE 100
++ +W++VI + S LS S V + G +H + F +++D +
Sbjct: 39 ISKQWLEVIKQR--SKLSACFSNPKVNRVMEKGFLHY-----FVKIKFKSVYKLNDEWFD 91
Query: 101 HLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK-LDLERCTRIHGGLVNLKGLMKLES 159
++ LT L I+ V+ +DL+R +V+LK L KL
Sbjct: 92 VFEKMNQLTELQ------------------IDWVREIDLKR-------IVDLKQLTKLSV 126
Query: 160 LNIKWCNCITDSDMKPLSG-LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
C+C D + L G + L L+IS +K D G + G+ +LT L ++ +
Sbjct: 127 -----CSCTEDVEQVKLIGEMKQLTELKISSNKFGDEGAKIIGGMTQLTKLEIKSNRIGK 181
Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 278
+L L L L ++ L G + S++ L L + +N++ E + + NL
Sbjct: 182 LGAKALCNLKELKELRISENALGASGAKSISQLKQLTTLTIDYNQLGPEGAKAISEIPNL 241
Query: 279 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
+L++ S IG G +++ + L L +G G + + + L S++LSF I
Sbjct: 242 TNLSICSDQIGAAGAKSISKMKQLLTLSADGNAIGDKGAKAIGEMKQLTSLHLSFNHIGF 301
Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 371
+ ++ L +L+ LN+ ++ G L ++
Sbjct: 302 EGAKAISELKNLRYLNMTTNPLSSEGAQLLQNM 334
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 95/205 (46%), Gaps = 8/205 (3%)
Query: 188 SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 247
S K+ D + + +LT L ++ V L + L L L++ C ++D E+
Sbjct: 81 SVYKLNDEWFDVFEKMNQLTELQIDW--VREIDLKRIVDLKQLTKLSV--CSCTED-VEQ 135
Query: 248 FSKIGSLKVL---NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 304
IG +K L + N+ DE + G+T L L + S IG G L L LK
Sbjct: 136 VKLIGEMKQLTELKISSNKFGDEGAKIIGGMTQLTKLEIKSNRIGKLGAKALCNLKELKE 195
Query: 305 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 364
L +S+ +G+SG + +S L L ++ + + + + ++ + +L +L++ + QI G
Sbjct: 196 LRISENALGASGAKSISQLKQLTTLTIDYNQLGPEGAKAISEIPNLTNLSICSDQIGAAG 255
Query: 365 LAALTSLTGLTHLDLFGARITDSGA 389
+++ + L L G I D GA
Sbjct: 256 AKSISKMKQLLTLSADGNAIGDKGA 280
>gi|290990568|ref|XP_002677908.1| predicted protein [Naegleria gruberi]
gi|284091518|gb|EFC45164.1| predicted protein [Naegleria gruberi]
Length = 294
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 60/225 (26%), Positives = 114/225 (50%), Gaps = 13/225 (5%)
Query: 185 LQISCSKVTDSGIAYLKG---LQKLTLLNLEGCPVTAACL---DSLSALGSLFYLNLNRC 238
+ +SC++ + Y K +++LT +N +T+ L +++ L SL L +
Sbjct: 61 ISVSCTQAATTCKQYWKAIGMMKRLTYINTVSNQITSNVLYIIKNITKLKSLQTLYIGFN 120
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
L D+G + I SL L++ T E + + L NL L++ C IG EG ++G
Sbjct: 121 PLGDEGVKLLGGIPSLTSLSICATSSTFESMGAISQLKNLNYLDVAYCDIGVEGSKIISG 180
Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD-GSLRKLAGLSSLKSLNLDA 357
+ +L L++S + +GS G++++S ++NL+++ + I D G+L +GL +L L +
Sbjct: 181 MTHLTELDISQSNIGSDGVKYISQMSNLKNLFIPANEILDEGALFISSGLKNLTFLEISC 240
Query: 358 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL------RSKF 396
+TD G++++ + L L + I + G L R+KF
Sbjct: 241 NALTDIGISSIAKMNQLEGLAINKNNIGEEGRKALTQMKASRTKF 285
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 105/223 (47%), Gaps = 28/223 (12%)
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ---ISCSKVTDSGIAYLKGLQKLTLL 209
G+MK + N IT + + + +T LKSLQ I + + D G+ L G+ LT L
Sbjct: 80 GMMKRLTYINTVSNQITSNVLYIIKNITKLKSLQTLYIGFNPLGDEGVKLLGGIPSLTSL 139
Query: 210 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
++ T + ++S L +L YL++ C + +G SKI
Sbjct: 140 SICATSSTFESMGAISQLKNLNYLDVAYCDIGVEG----SKI------------------ 177
Query: 270 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL-SGLTNLES 328
+ G+T+L L++ IG +G+ ++ + NLK L + ++ G + SGL NL
Sbjct: 178 --ISGMTHLTELDISQSNIGSDGVKYISQMSNLKNLFIPANEILDEGALFISSGLKNLTF 235
Query: 329 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 371
+ +S ++D + +A ++ L+ L ++ I + G ALT +
Sbjct: 236 LEISCNALTDIGISSIAKMNQLEGLAINKNNIGEEGRKALTQM 278
Score = 43.1 bits (100), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 83/177 (46%), Gaps = 33/177 (18%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLD-----FNFCIQISDGGLEHLRGLSNLTSLSF 113
L ++ + +T + L +K+ + L+SL FN + D G++ L G+ +LTSLS
Sbjct: 85 LTYINTVSNQITSNVLYIIKNITKLKSLQTLYIGFN---PLGDEGVKLLGGIPSLTSLSI 141
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD--- 170
++ T + M A + L NL LD+ C G + G+ L L+I N +D
Sbjct: 142 CATSS-TFESMGAISQLKNLNYLDVAYCDIGVEGSKIISGMTHLTELDISQSNIGSDGVK 200
Query: 171 -----SDMKPL----------------SGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
S++K L SGL NL L+ISC+ +TD GI+ + + +L
Sbjct: 201 YISQMSNLKNLFIPANEILDEGALFISSGLKNLTFLEISCNALTDIGISSIAKMNQL 257
>gi|354478681|ref|XP_003501543.1| PREDICTED: insulin-like growth factor-binding protein complex acid
labile subunit [Cricetulus griseus]
Length = 603
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 97/341 (28%), Positives = 138/341 (40%), Gaps = 48/341 (14%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLR-----GLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135
NL SLDF + + L L GL NL L RN + + F NL
Sbjct: 95 QNLSSLDF---LNLQGSWLNSLEPQALLGLQNLYHLHLERN-LLRSLAAGLFTHTPNLAS 150
Query: 136 LDL--ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT 193
L L R+ GL +GL L LN+ W + + DM GL NL+ L ++ +K
Sbjct: 151 LSLGNNLLGRLEDGL--FQGLGHLWDLNLGWNSLVVLPDMV-FQGLGNLRELVLAGNK-- 205
Query: 194 DSGIAYLKG-----------------------------LQKLTLLNLEGCPVTAACLDSL 224
+AYL+ L +L L L+ VTA +
Sbjct: 206 ---LAYLQPSLFCGLGELRELDLSRNALRSVKANVFIHLPRLQKLYLDRNFVTAVAPGAF 262
Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284
+ +L +L+L+ +++ + F + L VL L N IT K L LE L L
Sbjct: 263 LGMKALRWLDLSHNRVAGLLEDTFPGLLGLHVLRLAHNAITSLRPRTFKDLHFLEELQLG 322
Query: 285 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 344
I G GL L+ L L+D Q+ + SGL N+ +NLS + + R
Sbjct: 323 HNRIRQLGEKTFEGLGQLEVLTLNDNQIHEVKMGAFSGLFNVAVMNLSGNCLRNLPERVF 382
Query: 345 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
GLS L SL+L+ + L T L+GL L L G I+
Sbjct: 383 QGLSKLHSLHLEHSCLGRIRLHTFTGLSGLRRLFLRGNSIS 423
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 88/319 (27%), Positives = 132/319 (41%), Gaps = 19/319 (5%)
Query: 72 SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLI 131
GL HL D + L +N + + D + GL NL L N Q F GL
Sbjct: 167 QGLGHLWDLN----LGWNSLVVLPDMVFQ---GLGNLRELVLAGNKLAYLQP-SLFCGLG 218
Query: 132 NLVKLDLERCTRIHGGLVNLKG-----LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
L +LDL R L ++K L +L+ L + N +T G+ L+ L
Sbjct: 219 ELRELDLSR-----NALRSVKANVFIHLPRLQKLYLD-RNFVTAVAPGAFLGMKALRWLD 272
Query: 187 ISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE 246
+S ++V GL L +L L +T+ + L L L L ++ G +
Sbjct: 273 LSHNRVAGLLEDTFPGLLGLHVLRLAHNAITSLRPRTFKDLHFLEELQLGHNRIRQLGEK 332
Query: 247 KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 306
F +G L+VL L N+I + + GL N+ +NL + + GL L L
Sbjct: 333 TFEGLGQLEVLTLNDNQIHEVKMGAFSGLFNVAVMNLSGNCLRNLPERVFQGLSKLHSLH 392
Query: 307 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 366
L + +G L +GL+ L + L IS + LAGLS L L+L A Q+T
Sbjct: 393 LEHSCLGRIRLHTFTGLSGLRRLFLRGNSISITEEQSLAGLSELLELDLTANQLTHLPRR 452
Query: 367 ALTSLTGLTHLDLFGARIT 385
L L +L L R++
Sbjct: 453 LFQGLGQLEYLLLSNNRLS 471
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 79/301 (26%), Positives = 123/301 (40%), Gaps = 5/301 (1%)
Query: 85 SLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI 144
SL N ++ DG + GL +L L+ N+ + M F GL NL +L L
Sbjct: 152 SLGNNLLGRLEDGLFQ---GLGHLWDLNLGWNSLVVLPDM-VFQGLGNLRELVLAGNKLA 207
Query: 145 HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQ 204
+ GL +L L++ N + L L+ L + + VT G++
Sbjct: 208 YLQPSLFCGLGELRELDLS-RNALRSVKANVFIHLPRLQKLYLDRNFVTAVAPGAFLGMK 266
Query: 205 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 264
L L+L V D+ L L L L ++ F + L+ L LG N I
Sbjct: 267 ALRWLDLSHNRVAGLLEDTFPGLLGLHVLRLAHNAITSLRPRTFKDLHFLEELQLGHNRI 326
Query: 265 TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT 324
+GL LE L L+ I + + +GL N+ + LS + + R GL+
Sbjct: 327 RQLGEKTFEGLGQLEVLTLNDNQIHEVKMGAFSGLFNVAVMNLSGNCLRNLPERVFQGLS 386
Query: 325 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 384
L S++L + + L GLS L+ L L I+ T +L L+ L LDL ++
Sbjct: 387 KLHSLHLEHSCLGRIRLHTFTGLSGLRRLFLRGNSISITEEQSLAGLSELLELDLTANQL 446
Query: 385 T 385
T
Sbjct: 447 T 447
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 72/284 (25%), Positives = 121/284 (42%), Gaps = 8/284 (2%)
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER---CTRIHGGLVNLKGLMKLESL 160
GL L L RN A+ + F L L KL L+R G + +K L L+
Sbjct: 216 GLGELRELDLSRN-ALRSVKANVFIHLPRLQKLYLDRNFVTAVAPGAFLGMKALRWLDLS 274
Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 220
+ + + D+ GL L L+++ + +T K L L L L +
Sbjct: 275 HNRVAGLLEDT----FPGLLGLHVLRLAHNAITSLRPRTFKDLHFLEELQLGHNRIRQLG 330
Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 280
+ LG L L LN Q+ + FS + ++ V+NL N + + +GL+ L S
Sbjct: 331 EKTFEGLGQLEVLTLNDNQIHEVKMGAFSGLFNVAVMNLSGNCLRNLPERVFQGLSKLHS 390
Query: 281 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 340
L+L+ +G L TGL L+ L L + + + L+GL+ L ++L+ ++
Sbjct: 391 LHLEHSCLGRIRLHTFTGLSGLRRLFLRGNSISITEEQSLAGLSELLELDLTANQLTHLP 450
Query: 341 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 384
R GL L+ L L +++ L+ L + LD+ R+
Sbjct: 451 RRLFQGLGQLEYLLLSNNRLSALSEDVLSPLQRVFWLDISHNRL 494
Score = 46.6 bits (109), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 112/255 (43%), Gaps = 42/255 (16%)
Query: 47 KWMDVIASQGSSLLS-----------VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQIS 95
+W+D+ ++ + LL + L+ + +T KD L+ L +I
Sbjct: 269 RWLDLSHNRVAGLLEDTFPGLLGLHVLRLAHNAITSLRPRTFKDLHFLEELQLGHN-RIR 327
Query: 96 DGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE-RCTRIHGGLVNLKGL 154
G + GL L L+ +N I M AF+GL N+ ++L C R V +GL
Sbjct: 328 QLGEKTFEGLGQLEVLTLN-DNQIHEVKMGAFSGLFNVAVMNLSGNCLRNLPERV-FQGL 385
Query: 155 MKLESLNIKWC-----------------------NCITDSDMKPLSGLTNLKSLQISCSK 191
KL SL+++ N I+ ++ + L+GL+ L L ++ ++
Sbjct: 386 SKLHSLHLEHSCLGRIRLHTFTGLSGLRRLFLRGNSISITEEQSLAGLSELLELDLTANQ 445
Query: 192 VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL--NRCQLSDDGCEKFS 249
+T +GL +L L L ++A D LS L +F+L++ NR + +G FS
Sbjct: 446 LTHLPRRLFQGLGQLEYLLLSNNRLSALSEDVLSPLQRVFWLDISHNRLEALSEGL--FS 503
Query: 250 KIGSLKVLNLGFNEI 264
+G L+ L+L N +
Sbjct: 504 PLGRLRYLSLRNNSL 518
>gi|226223039|ref|YP_002757146.1| internalin, peptidoglycan bound protein (LPXTG motif) [Listeria
monocytogenes serotype 4b str. CLIP 80459]
gi|386731175|ref|YP_006204671.1| internalin, peptidoglycan bound protein (LPXTG motif) [Listeria
monocytogenes 07PF0776]
gi|406703195|ref|YP_006753549.1| internalin F (LPXTG motif) [Listeria monocytogenes L312]
gi|225875501|emb|CAS04202.1| Putative internalin, peptidoglycan bound protein (LPXTG motif)
[Listeria monocytogenes serotype 4b str. CLIP 80459]
gi|384389933|gb|AFH79003.1| internalin, peptidoglycan bound protein (LPXTG motif) [Listeria
monocytogenes 07PF0776]
gi|406360225|emb|CBY66498.1| internalin F (LPXTG motif) [Listeria monocytogenes L312]
Length = 823
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 94/303 (31%), Positives = 145/303 (47%), Gaps = 47/303 (15%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS--FRRNNAITAQGMKAFAGLINLVKLDL 138
+NL+ L+ N QI+D + LSNL L+ + N IT + A L NL +L L
Sbjct: 99 TNLEYLNLN-GNQITD-----ISPLSNLVKLTNLYIGTNKIT--DISALQNLTNLRELYL 150
Query: 139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGI 197
+ L L K+ SLN+ + + SD+ PLS +T L L ++ SKV D + I
Sbjct: 151 NEDNI--SDISPLANLTKMYSLNLGANHNL--SDLSPLSNMTGLNYLTVTESKVKDVTPI 206
Query: 198 AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD-DGCEKFSKIGSLKV 256
A L L L+L N + L++L SL Y Q++D +++ SLK+
Sbjct: 207 ANLTDLYSLSL-NYNQI----EDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKI 261
Query: 257 -------------------LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
L +G N+I+D + +K LT L+ LN+ S I D ++N
Sbjct: 262 GNNKITDLSPLANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISDISVLN-- 317
Query: 298 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 357
L L L L++ Q+G+ + + GLTNL ++ LS I+D +R LA LS + S + A
Sbjct: 318 NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD--IRPLASLSKMDSADF-A 374
Query: 358 RQI 360
Q+
Sbjct: 375 NQV 377
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 85/288 (29%), Positives = 125/288 (43%), Gaps = 56/288 (19%)
Query: 139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD---- 194
E+ I G ++ L LE LN+ N ITD + PLS L L +L I +K+TD
Sbjct: 87 EKVASIQG----IEYLTNLEYLNLN-GNQITD--ISPLSNLVKLTNLYIGTNKITDISAL 139
Query: 195 ----------------SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
S I+ L L K+ LNL G + L LS + L YL +
Sbjct: 140 QNLTNLRELYLNEDNISDISPLANLTKMYSLNL-GANHNLSDLSPLSNMTGLNYLTVTES 198
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN---------------- 282
++ D + + L L+L +N+I D + L LT+L
Sbjct: 199 KVKD--VTPIANLTDLYSLSLNYNQIED--ISPLASLTSLHYFTAYVNQITDITPVANMT 254
Query: 283 -LDSCGIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
L+S IG+ + +L+ L NL LE+ Q+ S + + LT L+ +N+ ISD
Sbjct: 255 RLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQI--SDINAVKDLTKLKMLNVGSNQISD 312
Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
S+ L LS L SL L+ Q+ + + + LT LT L L ITD
Sbjct: 313 ISV--LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD 358
>gi|308044417|ref|NP_001183765.1| hypothetical protein [Zea mays]
gi|238014428|gb|ACR38249.1| unknown [Zea mays]
gi|413949466|gb|AFW82115.1| hypothetical protein ZEAMMB73_510951 [Zea mays]
Length = 547
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 93/370 (25%), Positives = 155/370 (41%), Gaps = 68/370 (18%)
Query: 56 GSSLLSVDLSGS-DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
G S+ VDLSG V L +L L+ L C I++ + L G
Sbjct: 71 GRSVEEVDLSGFLSVNSEWLAYLGSFRYLRVLKLADCKNINNDAVWSLSG---------- 120
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
+T + +++ L L LD+ + G LK +L SLN+ + +
Sbjct: 121 -GILMTDKTLQSLQVLTKLEHLDIWGSETTNEGASALKSFARLLSLNLALTR-VNHLSIP 178
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL------G 228
P + N+ + +I DS + + LE V+AA ++ +
Sbjct: 179 PTTSYLNMSNCEIHSICDVDSEVP----------VPLENFIVSAATFGNIDKVFSSIQAS 228
Query: 229 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL-TNLESLNLDSCG 287
SL +L+L+ C+LS+ K+ +L+ L+L +N ITD + H+ + TNL+ L+L + G
Sbjct: 229 SLIHLDLSSCKLSN--LSFLEKMKNLEHLDLSYNIITDGAIEHIAKIGTNLQYLSLKNTG 286
Query: 288 IGDEGLVNLTG-LCNLKCLELSDTQVGSSGLRHL-------------------------- 320
I + L L G + NL L L++T++ S L ++
Sbjct: 287 ITSQALCILAGTVPNLTSLSLANTKIDDSALAYIGMIPLLRTIDLSQTSIKGFIHTEVNS 346
Query: 321 ---------SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 371
L LES+NL T +S + LA ++LK L L + ++D L AL++
Sbjct: 347 EKLLSMSAFEHLKYLESLNLEDTPLSAEVIPPLASFATLKYLYLKSDFLSDPALHALSAA 406
Query: 372 TGLTHLDLFG 381
+ L HL G
Sbjct: 407 SNLIHLGFRG 416
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 71/239 (29%), Positives = 113/239 (47%), Gaps = 26/239 (10%)
Query: 55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGL-SNLTSLSF 113
Q SSL+ +DLS + S L L+ NL+ LD ++ I I+DG +EH+ + +NL LS
Sbjct: 226 QASSLIHLDLSSCKL--SNLSFLEKMKNLEHLDLSYNI-ITDGAIEHIAKIGTNLQYLSL 282
Query: 114 RRNNAITAQGMKAFAGLI-NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 172
+ N IT+Q + AG + NL L L T+I + G++ L D
Sbjct: 283 K-NTGITSQALCILAGTVPNLTSLSLAN-TKIDDSALAYIGMIPLLR--------TIDLS 332
Query: 173 MKPLSGLTNLKSLQISCSKV-TDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
+ G + +++ K+ + S +LK L+ L NLE P++A + L++ +L
Sbjct: 333 QTSIKGFIHT---EVNSEKLLSMSAFEHLKYLESL---NLEDTPLSAEVIPPLASFATLK 386
Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGF--NEITDECLVHLKGLTNLESLNLDSCGI 288
YL L LSD S +L ++LGF N ++ L+ L L+L C I
Sbjct: 387 YLYLKSDFLSDPALHALSAASNL--IHLGFRGNILSSFGLLQFVPPVTLCVLDLSGCWI 443
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 92/203 (45%), Gaps = 13/203 (6%)
Query: 195 SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS-LFYLNLNRCQLSDDG-CEKFSKIG 252
S +++L+ ++ L L+L +T ++ ++ +G+ L YL+L ++ C +
Sbjct: 241 SNLSFLEKMKNLEHLDLSYNIITDGAIEHIAKIGTNLQYLSLKNTGITSQALCILAGTVP 300
Query: 253 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI--------GDEGLVNLTGLCNLKC 304
+L L+L +I D L ++ + L +++L I E L++++ +LK
Sbjct: 301 NLTSLSLANTKIDDSALAYIGMIPLLRTIDLSQTSIKGFIHTEVNSEKLLSMSAFEHLKY 360
Query: 305 LE---LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 361
LE L DT + + + L+ L+ + L +SD +L L+ S+L L ++
Sbjct: 361 LESLNLEDTPLSAEVIPPLASFATLKYLYLKSDFLSDPALHALSAASNLIHLGFRGNILS 420
Query: 362 DTGLAALTSLTGLTHLDLFGARI 384
GL L LDL G I
Sbjct: 421 SFGLLQFVPPVTLCVLDLSGCWI 443
>gi|427735492|ref|YP_007055036.1| Leucine Rich Repeat (LRR)-containing protein [Rivularia sp. PCC
7116]
gi|427370533|gb|AFY54489.1| Leucine Rich Repeat (LRR)-containing protein [Rivularia sp. PCC
7116]
Length = 344
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 73/219 (33%), Positives = 111/219 (50%), Gaps = 16/219 (7%)
Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
SD+KPLS LTNL L + + + S + L L LT L+L ++ + ++ L L
Sbjct: 110 SDIKPLSKLTNLTKLYLDSNNI--SQVKELANLINLTELSLSYNQLSH--VKGITNLTKL 165
Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
YLNL+R Q++D + + +L L L N+I E + L L NL L + I +
Sbjct: 166 EYLNLHRNQITD--IRPLANLTNLIKLQLSSNQI--ESIKPLSKLNNLTELIVYQNKINE 221
Query: 291 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 350
+ +T L NLK L + + S ++ L LTNL + ++ IS+ + LA LS+L
Sbjct: 222 --VKEITNLINLKYLNIGKNNI--SNVKPLWELTNLIELYINENKISN--IETLADLSNL 275
Query: 351 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 389
K L L QI+D + L LT LT L++ +I D A
Sbjct: 276 KELGLWKNQISD--ITPLWQLTNLTKLNIQENKIIDIKA 312
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 65/214 (30%), Positives = 101/214 (47%), Gaps = 44/214 (20%)
Query: 94 ISDGGLEHLRGLSNLTSLSF--RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL 151
+S L H++G++NLT L + N IT ++ A L NL+KL L + ++
Sbjct: 148 LSYNQLSHVKGITNLTKLEYLNLHRNQIT--DIRPLANLTNLIKLQLS-----SNQIESI 200
Query: 152 KGLMKLESLN--IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL 209
K L KL +L I + N I +++K ++ L NLK L I + I+ +K L +LT
Sbjct: 201 KPLSKLNNLTELIVYQNKI--NEVKEITNLINLKYLNIG-----KNNISNVKPLWELT-- 251
Query: 210 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
+L L +N ++S+ E + + +LK L L N+I+D +
Sbjct: 252 -------------------NLIELYINENKISN--IETLADLSNLKELGLWKNQISD--I 288
Query: 270 VHLKGLTNLESLNLDSCGIGD-EGLVNLTGLCNL 302
L LTNL LN+ I D + L NLT L L
Sbjct: 289 TPLWQLTNLTKLNIQENKIIDIKALANLTNLTYL 322
>gi|386336010|ref|YP_006032180.1| type III effector gala6 protein [Ralstonia solanacearum Po82]
gi|334198460|gb|AEG71644.1| type III effector gala6 protein [Ralstonia solanacearum Po82]
Length = 1053
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 88/303 (29%), Positives = 140/303 (46%), Gaps = 7/303 (2%)
Query: 57 SSLLSVDLSG---SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ +DLSG S V+++GL L L+SLD + +I D ++ L ++LTSL+
Sbjct: 647 PSVRRLDLSGCTGSAVSEAGLAVLARLP-LESLDLSGT-RIGDREVQALASSTSLTSLNL 704
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNC-ITDSD 172
N I G +A L L++ G+ L L SL ++ I ++
Sbjct: 705 S-GNRIGDAGARALGRNTVLTALNVSANPIRDTGVQALADSRSLTSLELRGIGIGIGEAS 763
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
+ L+ T L+SL IS + +++ A L Q L L C +T L+ + SL
Sbjct: 764 IAALASNTVLRSLDISSNDLSEQSAAELARNQTLASLKANACGLTNGMAQQLARIRSLRT 823
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
L + + D G ++ SL+ LNL N IT + L L+ L SL++ G GD G
Sbjct: 824 LEVGSNSIGDTGVLAIARNASLRTLNLSHNPITLQGLCPLELSRTLTSLDVSGIGCGDRG 883
Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
+ L+ L L+L +GS+G + L+ L S++L I + + LA L S
Sbjct: 884 ALLLSKNRVLTSLKLGFNGIGSAGAQRLAANRTLISLDLRGNTIDVDAAKALANTGRLTS 943
Query: 353 LNL 355
LN+
Sbjct: 944 LNV 946
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 98/352 (27%), Positives = 154/352 (43%), Gaps = 7/352 (1%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR 103
+ D+ + +AS +SL S++LSG+ + D+G L + L +L+ + I D G++ L
Sbjct: 685 IGDREVQALASS-TSLTSLNLSGNRIGDAGARALGRNTVLTALNVS-ANPIRDTGVQALA 742
Query: 104 GLSNLTSLSFRRNN-AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
+LTSL R I + A A L LD+ L L SL
Sbjct: 743 DSRSLTSLELRGIGIGIGEASIAALASNTVLRSLDISSNDLSEQSAAELARNQTLASLKA 802
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
C +T+ + L+ + +L++L++ + + D+G+ + L LNL P+T L
Sbjct: 803 NACG-LTNGMAQQLARIRSLRTLEVGSNSIGDTGVLAIARNASLRTLNLSHNPITLQGLC 861
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282
L +L L+++ D G SK L L LGFN I L L SL+
Sbjct: 862 PLELSRTLTSLDVSGIGCGDRGALLLSKNRVLTSLKLGFNGIGSAGAQRLAANRTLISLD 921
Query: 283 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 342
L I + L L L +SD ++ + L+ L S+++S +S + +
Sbjct: 922 LRGNTIDVDAAKALANTGRLTSLNVSDCKLDDAAASALAESLTLTSLDVSVNRLSGRAAQ 981
Query: 343 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRS 394
LAG ++L SLN+ I G AL LT LD AR D G A R+
Sbjct: 982 ALAGNATLTSLNISHNHIGPDGARALAESPSLTVLD---ARANDIGEAGARA 1030
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 80/315 (25%), Positives = 135/315 (42%), Gaps = 14/315 (4%)
Query: 23 VSLEAFRDCALQDLC----------LGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDS 72
VS RD +Q L G G+ + + +AS + L S+D+S +D+++
Sbjct: 728 VSANPIRDTGVQALADSRSLTSLELRGIGIGIGEASIAALASN-TVLRSLDISSNDLSEQ 786
Query: 73 GLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLIN 132
L L SL N C +++G + L + +L +L +N+I G+ A A +
Sbjct: 787 SAAELARNQTLASLKANAC-GLTNGMAQQLARIRSLRTLEVG-SNSIGDTGVLAIARNAS 844
Query: 133 LVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKV 192
L L+L GL L+ L SL++ C D LS L SL++ + +
Sbjct: 845 LRTLNLSHNPITLQGLCPLELSRTLTSLDVSGIGC-GDRGALLLSKNRVLTSLKLGFNGI 903
Query: 193 TDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG 252
+G L + L L+L G + +L+ G L LN++ C+L D ++
Sbjct: 904 GSAGAQRLAANRTLISLDLRGNTIDVDAAKALANTGRLTSLNVSDCKLDDAAASALAESL 963
Query: 253 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 312
+L L++ N ++ L G L SLN+ IG +G L +L L+ +
Sbjct: 964 TLTSLDVSVNRLSGRAAQALAGNATLTSLNISHNHIGPDGARALAESPSLTVLDARANDI 1023
Query: 313 GSSGLRHLSGLTNLE 327
G +G R L T ++
Sbjct: 1024 GEAGARALENNTRMQ 1038
Score = 41.6 bits (96), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 80/199 (40%), Gaps = 28/199 (14%)
Query: 200 LKGLQKLTLLNLEGCPVT------AACLDSLSALGSLFYL--------NLNRCQLSDDGC 245
LKG LTL +L+ P T +AC S + G++ YL N+ + DDG
Sbjct: 113 LKG--NLTLTDLKALPATLRHLDLSACTGSAKSSGAIAYLAGLPLESLNVAGADIGDDGA 170
Query: 246 EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG---LCNL 302
+ SLK LN I L L SL+L GIGDEG L G L NL
Sbjct: 171 RLLAANPSLKTLNAANGGIGAAGARALAESPVLTSLDLTQNGIGDEGARALAGSRSLTNL 230
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L T VG+ L LT L+ NL +D L + + A +IT
Sbjct: 231 AVLNCLVTDVGAQALAGNRTLTALDLGNLITE--TDNELEQ-------AGYDRTANEITA 281
Query: 363 TGLAALTSLTGLTHLDLFG 381
G AL LT L + G
Sbjct: 282 QGAWALAQNRSLTSLSIQG 300
>gi|46906647|ref|YP_013036.1| internalin [Listeria monocytogenes serotype 4b str. F2365]
gi|405751633|ref|YP_006675098.1| internalin F [Listeria monocytogenes SLCC2378]
gi|424713287|ref|YP_007014002.1| Internalin-A [Listeria monocytogenes serotype 4b str. LL195]
gi|46879912|gb|AAT03213.1| internalin [Listeria monocytogenes serotype 4b str. F2365]
gi|404220833|emb|CBY72196.1| internalin F (LPXTG motif) [Listeria monocytogenes SLCC2378]
gi|424012471|emb|CCO63011.1| Internalin-A [Listeria monocytogenes serotype 4b str. LL195]
Length = 823
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 94/303 (31%), Positives = 145/303 (47%), Gaps = 47/303 (15%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS--FRRNNAITAQGMKAFAGLINLVKLDL 138
+NL+ L+ N QI+D + LSNL L+ + N IT + A L NL +L L
Sbjct: 99 TNLEYLNLN-GNQITD-----ISPLSNLVKLTNLYIGTNKIT--DISALQNLTNLRELYL 150
Query: 139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGI 197
+ L L K+ SLN+ + + SD+ PLS +T L L ++ SKV D + I
Sbjct: 151 NEDNI--SDISPLANLTKMYSLNLGANHNL--SDLSPLSNMTGLNYLTVTESKVKDVTPI 206
Query: 198 AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD-DGCEKFSKIGSLKV 256
A L L L+L N + L++L SL Y Q++D +++ SLK+
Sbjct: 207 ANLTDLYSLSL-NYNQI----EDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKI 261
Query: 257 -------------------LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
L +G N+I+D + +K LT L+ LN+ S I D ++N
Sbjct: 262 GNNKITDLSPLANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISDISVLN-- 317
Query: 298 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 357
L L L L++ Q+G+ + + GLTNL ++ LS I+D +R LA LS + S + A
Sbjct: 318 NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD--IRPLASLSKMDSADF-A 374
Query: 358 RQI 360
Q+
Sbjct: 375 NQV 377
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 85/288 (29%), Positives = 125/288 (43%), Gaps = 56/288 (19%)
Query: 139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD---- 194
E+ I G ++ L LE LN+ N ITD + PLS L L +L I +K+TD
Sbjct: 87 EKVASIQG----IEYLTNLEYLNLN-GNQITD--ISPLSNLVKLTNLYIGTNKITDISAL 139
Query: 195 ----------------SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
S I+ L L K+ LNL G + L LS + L YL +
Sbjct: 140 QNLTNLRELYLNEDNISDISPLANLTKMYSLNL-GANHNLSDLSPLSNMTGLNYLTVTES 198
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN---------------- 282
++ D + + L L+L +N+I D + L LT+L
Sbjct: 199 KVKD--VTPIANLTDLYSLSLNYNQIED--ISPLASLTSLHYFTAYVNQITDITPVANMT 254
Query: 283 -LDSCGIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
L+S IG+ + +L+ L NL LE+ Q+ S + + LT L+ +N+ ISD
Sbjct: 255 RLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQI--SDINAVKDLTKLKMLNVGSNQISD 312
Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
S+ L LS L SL L+ Q+ + + + LT LT L L ITD
Sbjct: 313 ISV--LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD 358
>gi|290990770|ref|XP_002678009.1| predicted protein [Naegleria gruberi]
gi|284091619|gb|EFC45265.1| predicted protein [Naegleria gruberi]
Length = 329
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 100/200 (50%), Gaps = 10/200 (5%)
Query: 199 YLKGLQKLTLLNLEGC------PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG 252
++K K +++N++ C P + + L SL+ ++ Q+ +G + S++
Sbjct: 96 FMKSQFKNSIVNVKFCYRLRNSPDKVKFISEMKQLTSLY---ISDNQIGVEGAKYISEMK 152
Query: 253 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 312
L L++ +N+I E ++ + L SLN+ GIG EG ++ + L L + Q+
Sbjct: 153 QLTSLDITYNQIGVEGSKYISEMKQLTSLNIYYNGIGVEGTKYISEMKQLTSLNIGYNQI 212
Query: 313 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 372
G G +++S + L S+++ + GI + ++ + L SLN+ QI G ++ +
Sbjct: 213 GVEGAKYISEMKQLTSLDIYYNGIGVEGSKYISEMKQLTSLNIGYNQIGVEGSKFISEMK 272
Query: 373 GLTHLDLFGARITDSGAAYL 392
LT L++ G +I GA ++
Sbjct: 273 QLT-LNITGNQIGVEGAKFI 291
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/244 (22%), Positives = 112/244 (45%), Gaps = 27/244 (11%)
Query: 151 LKGLMKLESLNIKWCNCITDS--DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTL 208
+K K +N+K+C + +S +K +S + L SL IS +++ G Y+ +++LT
Sbjct: 97 MKSQFKNSIVNVKFCYRLRNSPDKVKFISEMKQLTSLYISDNQIGVEGAKYISEMKQLTS 156
Query: 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 268
L++ Q+ +G + S++ L LN+ +N I E
Sbjct: 157 LDI------------------------TYNQIGVEGSKYISEMKQLTSLNIYYNGIGVEG 192
Query: 269 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 328
++ + L SLN+ IG EG ++ + L L++ +G G +++S + L S
Sbjct: 193 TKYISEMKQLTSLNIGYNQIGVEGAKYISEMKQLTSLDIYYNGIGVEGSKYISEMKQLTS 252
Query: 329 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 388
+N+ + I + ++ + L +LN+ QI G ++ + LT LD+ +I G
Sbjct: 253 LNIGYNQIGVEGSKFISEMKQL-TLNITGNQIGVEGAKFISEMKQLTSLDITYNQIGVEG 311
Query: 389 AAYL 392
+ ++
Sbjct: 312 SKFI 315
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/248 (23%), Positives = 113/248 (45%), Gaps = 29/248 (11%)
Query: 86 LDFNFCIQI--SDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTR 143
++ FC ++ S ++ + + LTSL + +N I +G K + + L LD+
Sbjct: 106 VNVKFCYRLRNSPDKVKFISEMKQLTSL-YISDNQIGVEGAKYISEMKQLTSLDITYNQI 164
Query: 144 IHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGL 203
G + + +L SLNI + N I K +S + L SL I +++ G Y+ +
Sbjct: 165 GVEGSKYISEMKQLTSLNI-YYNGIGVEGTKYISEMKQLTSLNIGYNQIGVEGAKYISEM 223
Query: 204 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE 263
++LT L++ Y N + +G + S++ L LN+G+N+
Sbjct: 224 KQLTSLDI--------------------YYN----GIGVEGSKYISEMKQLTSLNIGYNQ 259
Query: 264 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 323
I E + + L +LN+ IG EG ++ + L L+++ Q+G G + +S +
Sbjct: 260 IGVEGSKFISEMKQL-TLNITGNQIGVEGAKFISEMKQLTSLDITYNQIGVEGSKFISEM 318
Query: 324 TNLESINL 331
L S+++
Sbjct: 319 KQLTSLDI 326
>gi|320168544|gb|EFW45443.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 358
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 79/279 (28%), Positives = 131/279 (46%), Gaps = 6/279 (2%)
Query: 109 TSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCI 168
T L F++ +IT+ AF+G+ +L ++ L L GL L+ L++ N I
Sbjct: 70 TILYFQKT-SITSIAPYAFSGMSSLTRIYLYNSQITEIALNAFAGLPALQLLHLS-NNPI 127
Query: 169 TDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG 228
T S L+++ L ++ +++T G+ LT L L G V++ ++ S+L
Sbjct: 128 TSLPDYGFSSLSSVSELYLANTQLTTLSAHAFDGMSSLTYLYLAGNLVSSVAPNTFSSLY 187
Query: 229 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 288
SL +L+L +L+ + + +L+ L+L + I GL NL SL + G+
Sbjct: 188 SLRFLHLFNTKLTTLPVDAIGGLSALEELHLYRSNIASIPPNAFMGL-NLISLRV--LGL 244
Query: 289 GDEGLVN-LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 347
N G+ +L L L+ + S +GL +L +NL T I+ A L
Sbjct: 245 ITSLPSNAFNGMSSLTSLSLNGNPITSFTDTAFAGLFSLTLLNLYSTQITSIPANAFADL 304
Query: 348 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
SL LNL + QIT+ T+L+ LT L++ G RIT
Sbjct: 305 YSLNVLNLFSNQITNIPSETFTALSALTQLNMVGTRITS 343
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 62/244 (25%), Positives = 103/244 (42%), Gaps = 46/244 (18%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
IT SG+++L + + S++T+ + GL L LL+L P+T+
Sbjct: 79 ITSIAPYAFSGMSSLTRIYLYNSQITEIALNAFAGLPALQLLHLSNNPITS--------- 129
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
L D G FS + S+ L L ++T G+++L L L
Sbjct: 130 ------------LPDYG---FSSLSSVSELYLANTQLTTLSAHAFDGMSSLTYLYLAGNL 174
Query: 288 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL-----------SFTGI 336
+ + L +L+ L L +T++ + + + GL+ LE ++L +F G+
Sbjct: 175 VSSVAPNTFSSLYSLRFLHLFNTKLTTLPVDAIGGLSALEELHLYRSNIASIPPNAFMGL 234
Query: 337 SDGSLRKLA-----------GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
+ SLR L G+SSL SL+L+ IT A L LT L+L+ +IT
Sbjct: 235 NLISLRVLGLITSLPSNAFNGMSSLTSLSLNGNPITSFTDTAFAGLFSLTLLNLYSTQIT 294
Query: 386 DSGA 389
A
Sbjct: 295 SIPA 298
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 82/179 (45%), Gaps = 5/179 (2%)
Query: 105 LSNLTSLSFRR--NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
S+L SL F N +T + A GL L +L L R + + M L +++
Sbjct: 183 FSSLYSLRFLHLFNTKLTTLPVDAIGGLSALEELHLYRS---NIASIPPNAFMGLNLISL 239
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
+ IT +G+++L SL ++ + +T GL LTLLNL +T+ +
Sbjct: 240 RVLGLITSLPSNAFNGMSSLTSLSLNGNPITSFTDTAFAGLFSLTLLNLYSTQITSIPAN 299
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 281
+ + L SL LNL Q+++ E F+ + +L LN+ IT GL++L L
Sbjct: 300 AFADLYSLNVLNLFSNQITNIPSETFTALSALTQLNMVGTRITSIPDNAFNGLSSLTML 358
>gi|440781277|ref|ZP_20959619.1| putative surface protein [Clostridium pasteurianum DSM 525]
gi|440220882|gb|ELP60088.1| putative surface protein [Clostridium pasteurianum DSM 525]
Length = 458
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 93/348 (26%), Positives = 169/348 (48%), Gaps = 71/348 (20%)
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
+V ++ DV D+ +I KD + Q++ +N D ++ ++NL++ +
Sbjct: 120 TVTVNDRDVNDT-VITFKDKNLEQNIRYNIHKPTGDLYKSDVKNITNLSA---------S 169
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG-LMKLESLNIKWCNCITD--------- 170
Q +K +G+ NL+ L + +R +N G L KLE++ ++ N I+D
Sbjct: 170 YQDIKDISGIENLINLQVLNLSRNQIKDINAIGNLTKLETIYLE-NNQISDISPLKGLAN 228
Query: 171 -----------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
+D+ L GL+NLK+L ++ ++V+D
Sbjct: 229 LQILGLKKNRINDINSLKGLSNLKTLALNFNEVSD------------------------- 263
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
++ L L +L+ ++L ++SD + +L+ L L N+I D + LK LTNL+
Sbjct: 264 -INVLKELSNLYSVDLQSNKISD--ISSLKDLKNLQYLYLESNKIKDISI--LKNLTNLQ 318
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE-SINLSFTGISD 338
++L+S I D +N L L L LS+ Q+ S + LS LTNL+ ++L I+D
Sbjct: 319 DISLESNEIDDISSIN--NLTKLNSLILSNNQI--SDISALSQLTNLQFKLDLEGNNITD 374
Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
++ L GL L++L L++ ++++ L+ L SLT L L+L +I+D
Sbjct: 375 --VKPLKGLVKLQNLVLNSNKLSN--LSGLDSLTNLQILELKNNQISD 418
>gi|91092916|ref|XP_971494.1| PREDICTED: similar to AGAP012123-PA [Tribolium castaneum]
Length = 442
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 105/216 (48%), Gaps = 9/216 (4%)
Query: 9 QIFNELVYSRC--LTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG 66
Q EL + C +TE L A + + L L V D+ + +A +L L
Sbjct: 181 QALYELELAGCNEITEAGLWACLNPRIVSLTLSDCINVADEAVGAVAQLLPALYEFSLQA 240
Query: 67 SDVTDSGLIHL--KDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQG 123
VTD+ L + K ++L L + C +I++ G+ ++ L NLT LS + IT G
Sbjct: 241 YHVTDAALGYFSPKQSNSLNILRLHSCWEITNHGVVNIVHSLPNLTVLSLSGCSKITDDG 300
Query: 124 MKAFA-GLINLVKLDLERCTRIHGGLVNLKG--LMKLESLNIKWCNCITDSDMKPLSGLT 180
++ A L L LDL C RI + L +LE L + C ITD + +S +
Sbjct: 301 VELIAENLQKLRSLDLSWCPRITDAALEYIACDLNQLEELTLDRCVHITDIGIGYISTML 360
Query: 181 NLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP 215
+L +L + CS++ D G+ +L G++ L +L+L GCP
Sbjct: 361 SLSALYLRWCSQIRDFGLQHLCGMRNLQILSLAGCP 396
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 71/236 (30%), Positives = 121/236 (51%), Gaps = 24/236 (10%)
Query: 175 PLSGLTNLKSLQISCSKVTDSGI-AYLKGLQKLTLLNLEGC-PVTA----ACLDSLSALG 228
PL+ ++ +L + CS +TD G+ + L LQ L L L GC +T ACL+
Sbjct: 152 PLAS-KHIHTLSLRCSSITDRGLESLLDHLQALYELELAGCNEITEAGLWACLNP----- 205
Query: 229 SLFYLNLNRC-QLSDDGCEKFSK-IGSLKVLNLGFNEITDECLVHL--KGLTNLESLNLD 284
+ L L+ C ++D+ ++ + +L +L +TD L + K +L L L
Sbjct: 206 RIVSLTLSDCINVADEAVGAVAQLLPALYEFSLQAYHVTDAALGYFSPKQSNSLNILRLH 265
Query: 285 SCG-IGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLS-GLTNLESINLSF-TGISDG 339
SC I + G+VN+ L NL L LS +++ G+ ++ L L S++LS+ I+D
Sbjct: 266 SCWEITNHGVVNIVHSLPNLTVLSLSGCSKITDDGVELIAENLQKLRSLDLSWCPRITDA 325
Query: 340 SLRKLA-GLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYL 392
+L +A L+ L+ L LD ITD G+ ++++ L+ L L + ++I D G +L
Sbjct: 326 ALEYIACDLNQLEELTLDRCVHITDIGIGYISTMLSLSALYLRWCSQIRDFGLQHL 381
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 115/231 (49%), Gaps = 14/231 (6%)
Query: 115 RNNAITAQGMKAFA-GLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSD 172
R ++IT +G+++ L L +L+L C I GL ++ SL + C + D
Sbjct: 164 RCSSITDRGLESLLDHLQALYELELAGCNEITEAGLWACLN-PRIVSLTLSDCINVADEA 222
Query: 173 MKPLSGL-TNLKSLQISCSKVTDSGIAYLKGLQK--LTLLNLEGCP--VTAACLDSLSAL 227
+ ++ L L + VTD+ + Y Q L +L L C ++ + +L
Sbjct: 223 VGAVAQLLPALYEFSLQAYHVTDAALGYFSPKQSNSLNILRLHSCWEITNHGVVNIVHSL 282
Query: 228 GSLFYLNLNRC-QLSDDGCEKFSK-IGSLKVLNLGF-NEITDECLVHLK-GLTNLESLNL 283
+L L+L+ C +++DDG E ++ + L+ L+L + ITD L ++ L LE L L
Sbjct: 283 PNLTVLSLSGCSKITDDGVELIAENLQKLRSLDLSWCPRITDAALEYIACDLNQLEELTL 342
Query: 284 DSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLS 332
D C I D G+ ++ + +L L L +Q+ GL+HL G+ NL+ ++L+
Sbjct: 343 DRCVHITDIGIGYISTMLSLSALYLRWCSQIRDFGLQHLCGMRNLQILSLA 393
>gi|224124626|ref|XP_002330070.1| predicted protein [Populus trichocarpa]
gi|222871495|gb|EEF08626.1| predicted protein [Populus trichocarpa]
Length = 1126
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 106/319 (33%), Positives = 151/319 (47%), Gaps = 56/319 (17%)
Query: 53 ASQG-SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI---QISDGGLEHLRGLSNL 108
AS G S+L S+DLS + +T SGL L S LQ L+ N + Q +D + G S+L
Sbjct: 131 ASTGFSALKSLDLSDNQLTGSGLKVLS--SRLQKLE-NLHLSGNQCNDSIFSSITGFSSL 187
Query: 109 TSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCI 168
SL N +T G+K + L KLE+L++ C
Sbjct: 188 KSLDLSY-NELTGSGLKVLS-----------------------SRLQKLENLHLSGNQC- 222
Query: 169 TDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKG-LQKLTLLNLEGCPVTAACLDSLSAL 227
DS ++G ++LKSL +S ++VT SG+ L L+KL L+L + SLS
Sbjct: 223 NDSIFSSITGFSSLKSLDLSYNEVTGSGLKVLSSKLKKLENLDLSDNQCNDSIFSSLSGF 282
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
SL YLNL++ QL+ + I S +VL + GL NLE L+L S
Sbjct: 283 SSLKYLNLSQNQLTGSS----TGINSFQVL--------------VSGLRNLEELHLYSNK 324
Query: 288 IGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSFTGISDGSL-RKLA 345
+ + L +L+G LK L+LSD GS+G L+GL NLE++ L T + L L
Sbjct: 325 LNNNILSSLSGFSTLKSLDLSDNMFTGSTG---LNGLRNLETLYLGNTDFKESILIESLG 381
Query: 346 GLSSLKSLNLDARQITDTG 364
L SLK+L+ T G
Sbjct: 382 ALPSLKTLDASYSNFTHFG 400
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 86/261 (32%), Positives = 122/261 (46%), Gaps = 35/261 (13%)
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKG-LMKLESLNIKWCNCITDSDMKPLSGLTNL 182
A G L LDL GL L L KLE+L++ C DS ++G ++L
Sbjct: 129 FHASTGFSALKSLDLSDNQLTGSGLKVLSSRLQKLENLHLSGNQC-NDSIFSSITGFSSL 187
Query: 183 KSLQISCSKVTDSGIAYLKG-LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
KSL +S +++T SG+ L LQKL L+L G N+C +
Sbjct: 188 KSLDLSYNELTGSGLKVLSSRLQKLENLHLSG----------------------NQC--N 223
Query: 242 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG-LTNLESLNLDSCGIGDEGLVNLTGLC 300
D + SLK L+L +NE+T L L L LE+L+L D +L+G
Sbjct: 224 DSIFSSITGFSSLKSLDLSYNEVTGSGLKVLSSKLKKLENLDLSDNQCNDSIFSSLSGFS 283
Query: 301 NLKCLELSDTQV--GSSGLRHL----SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 354
+LK L LS Q+ S+G+ SGL NLE ++L +++ L L+G S+LKSL+
Sbjct: 284 SLKYLNLSQNQLTGSSTGINSFQVLVSGLRNLEELHLYSNKLNNNILSSLSGFSTLKSLD 343
Query: 355 LDARQIT-DTGLAALTSLTGL 374
L T TGL L +L L
Sbjct: 344 LSDNMFTGSTGLNGLRNLETL 364
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/132 (37%), Positives = 74/132 (56%), Gaps = 3/132 (2%)
Query: 251 IGSLKVLNLGFNEITDECLVHLKG-LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 309
+LK L+L N++T L L L LE+L+L D ++TG +LK L+LS
Sbjct: 135 FSALKSLDLSDNQLTGSGLKVLSSRLQKLENLHLSGNQCNDSIFSSITGFSSLKSLDLSY 194
Query: 310 TQVGSSGLRHLSG-LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 368
++ SGL+ LS L LE+++LS +D + G SSLKSL+L ++T +GL L
Sbjct: 195 NELTGSGLKVLSSRLQKLENLHLSGNQCNDSIFSSITGFSSLKSLDLSYNEVTGSGLKVL 254
Query: 369 TS-LTGLTHLDL 379
+S L L +LDL
Sbjct: 255 SSKLKKLENLDL 266
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 72/220 (32%), Positives = 119/220 (54%), Gaps = 9/220 (4%)
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKG-LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
+G + LKSL +S +++T SG+ L LQKL L+L G + S++ SL L+L
Sbjct: 133 TGFSALKSLDLSDNQLTGSGLKVLSSRLQKLENLHLSGNQCNDSIFSSITGFSSLKSLDL 192
Query: 236 NRCQLSDDGCEKFS-KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
+ +L+ G + S ++ L+ L+L N+ D + G ++L+SL+L + GL
Sbjct: 193 SYNELTGSGLKVLSSRLQKLENLHLSGNQCNDSIFSSITGFSSLKSLDLSYNEVTGSGLK 252
Query: 295 NLTG-LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS---FTGISDG--SLRKL-AGL 347
L+ L L+ L+LSD Q S LSG ++L+ +NLS TG S G S + L +GL
Sbjct: 253 VLSSKLKKLENLDLSDNQCNDSIFSSLSGFSSLKYLNLSQNQLTGSSTGINSFQVLVSGL 312
Query: 348 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 387
+L+ L+L + ++ + L++L+ + L LDL T S
Sbjct: 313 RNLEELHLYSNKLNNNILSSLSGFSTLKSLDLSDNMFTGS 352
Score = 38.1 bits (87), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 92/340 (27%), Positives = 147/340 (43%), Gaps = 45/340 (13%)
Query: 49 MDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRG-LSN 107
+ V++S+ L ++ LSG+ DS + S+L+SLD ++ +++ GL+ L L
Sbjct: 202 LKVLSSRLQKLENLHLSGNQCNDSIFSSITGFSSLKSLDLSYN-EVTGSGLKVLSSKLKK 260
Query: 108 LTSLSFRRNN----AITAQGMKAFAGLINLVKLDLE-RCTRIHGGLVNLKGLMKLESLNI 162
L +L N ++ + +NL + L T I+ V + GL LE L++
Sbjct: 261 LENLDLSDNQCNDSIFSSLSGFSSLKYLNLSQNQLTGSSTGINSFQVLVSGLRNLEELHL 320
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS-GIAYLKGLQKLTLLNLEGCPVTAACL 221
+ N + ++ + LSG + LKSL +S + T S G+ L+ L+ L L N + + +
Sbjct: 321 -YSNKLNNNILSSLSGFSTLKSLDLSDNMFTGSTGLNGLRNLETLYLGNTDF--KESILI 377
Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN---L 278
+SL AL SL L D F+ G KGL N L
Sbjct: 378 ESLGALPSLKTL--------DASYSNFTHFG--------------------KGLCNSSSL 409
Query: 279 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS-GLRHLSGLTNLESINLSFTGIS 337
E + LD + L N+ L LK L L+ S+ + L NLE + LS +
Sbjct: 410 EEVFLDDSSLPASFLRNIGPLSTLKVLSLAGVDFNSTLPAQGWCELKNLEELYLSGNNLK 469
Query: 338 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 377
L LS L+ L+L Q+ G A + L+ L L
Sbjct: 470 GVLPPCLGNLSFLQILDLSHNQL--EGNIAFSYLSHLKQL 507
>gi|406835554|ref|ZP_11095148.1| ribonuclease inhibitor [Schlesneria paludicola DSM 18645]
Length = 392
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 98/210 (46%), Gaps = 7/210 (3%)
Query: 190 SKVTDSGIAYL----KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 245
S++ DS I L +GL ++T +N + VT+A S+S L L L L+ +++++ C
Sbjct: 72 SEINDSAITQLTSLSEGLNEITEINADFSTVTSAAFASISKLSKLRQLRLSSTRVTNEAC 131
Query: 246 EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 305
EK +++ +L+VL L + D + L L+NL+SL L C + G + L+ L
Sbjct: 132 EKIAELPALEVLILSDTVVDDVGVAALSRLSNLKSLELSRCHLTRAGFQAIGAFPALEYL 191
Query: 306 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 365
E+ T + L + L S+ LS I+D L L L ++ L + I GL
Sbjct: 192 EIRRTNLDDVSLDLVCNAKTLVSLRLSNNPITDQGLDALGKLPGIEVLEFNETGIHGWGL 251
Query: 366 AALTSLTG---LTHLDLFGARITDSGAAYL 392
A G L L LF + GA +
Sbjct: 252 AHAQKRGGGKNLKELSLFKCPLDGMGAKAI 281
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 62/240 (25%), Positives = 112/240 (46%), Gaps = 7/240 (2%)
Query: 152 KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
+GL ++ +N + + +T + +S L+ L+ L++S ++VT+ + L L +L L
Sbjct: 87 EGLNEITEINADF-STVTSAAFASISKLSKLRQLRLSSTRVTNEACEKIAELPALEVLIL 145
Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 271
V + +LS L +L L L+RC L+ G + +L+ L + + D L
Sbjct: 146 SDTVVDDVGVAALSRLSNLKSLELSRCHLTRAGFQAIGAFPALEYLEIRRTNLDDVSLDL 205
Query: 272 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS---GLTNLES 328
+ L SL L + I D+GL L L ++ LE ++T + GL H G NL+
Sbjct: 206 VCNAKTLVSLRLSNNPITDQGLDALGKLPGIEVLEFNETGIHGWGLAHAQKRGGGKNLKE 265
Query: 329 INLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARITDS 387
++L + + + S++ L L + Q+ D GL +T + G+ +L T S
Sbjct: 266 LSLFKCPLDGMGAKAIGNFKSVEKLVLGEIPQLDDEGL--MTMVRGMKNLKYLNCSKTPS 323
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 72/274 (26%), Positives = 117/274 (42%), Gaps = 51/274 (18%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
LS + V D G+ L SNL+SL+ + C ++ G + + L L RR N
Sbjct: 145 LSDTVVDDVGVAALSRLSNLKSLELSRC-HLTRAGFQAIGAFPALEYLEIRRTN------ 197
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
++ V LDL + N K L+ L N N ITD + L L ++
Sbjct: 198 -------LDDVSLDL---------VCNAKTLVSLRLSN----NPITDQGLDALGKLPGIE 237
Query: 184 SLQISCSKVTDSGIAYLK---GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC-Q 239
L+ + + + G+A+ + G + L L+L CP+ ++ S+ L L Q
Sbjct: 238 VLEFNETGIHGWGLAHAQKRGGGKNLKELSLFKCPLDGMGAKAIGNFKSVEKLVLGEIPQ 297
Query: 240 LSDDGCEKFSK-IGSLKVLN----------LGFNEITDECLVHLKGLTNLESLNLDSCG- 287
L D+G + + +LK LN LGF L G +LE L++ C
Sbjct: 298 LDDEGLMTMVRGMKNLKYLNCSKTPSLFGTLGFK--------ALLGSKDLEELHIGECSR 349
Query: 288 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 321
IGD+ + + + NLK L + T + + G+ L+
Sbjct: 350 IGDDAVPFIKKMKNLKILRVHGTSISARGMAELA 383
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 103/224 (45%), Gaps = 19/224 (8%)
Query: 14 LVYSRC-LTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDS 72
L SRC LT +A + + ++D +D++ + +L+S+ LS + +TD
Sbjct: 167 LELSRCHLTRAGFQAIGAFPALEYLEIRRTNLDDVSLDLVCN-AKTLVSLRLSNNPITDQ 225
Query: 73 GLIHLKDCSNLQSLDFNFCIQISDGGLEHLR---GLSNLTSLSFRRNNAITAQGMKAFAG 129
GL L ++ L+FN I GL H + G NL LS + + G KA
Sbjct: 226 GLDALGKLPGIEVLEFNET-GIHGWGLAHAQKRGGGKNLKELSLFK-CPLDGMGAKAIGN 283
Query: 130 LINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDM------KPLSGLTNL 182
++ KL L ++ GL+ + MK N+K+ NC + K L G +L
Sbjct: 284 FKSVEKLVLGEIPQLDDEGLMTMVRGMK----NLKYLNCSKTPSLFGTLGFKALLGSKDL 339
Query: 183 KSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
+ L I CS++ D + ++K ++ L +L + G ++A + L+
Sbjct: 340 EELHIGECSRIGDDAVPFIKKMKNLKILRVHGTSISARGMAELA 383
>gi|320167357|gb|EFW44256.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 766
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 82/271 (30%), Positives = 113/271 (41%), Gaps = 25/271 (9%)
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
++N ITA AFAGL +L L L N IT
Sbjct: 91 QSNQITAISPDAFAGLTSLNSLYLSD-------------------------NPITSISAN 125
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
S LT L L +S +++TD L L LNLE +T + ++L L L+
Sbjct: 126 AFSDLTELSYLHLSYTQLTDISANAFTTLPALVSLNLEFTQITTISAAAFTSLAKLKNLS 185
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
LN Q++ F+ + +L L L N+IT + LT L L L + I
Sbjct: 186 LNNNQITSVPESAFTGLTALVSLELDNNQITSISALAFANLTALSYLGLANNRITGISEN 245
Query: 295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 354
TGL L L L D Q+ S + LT L +++L+ I+ S GL++L L+
Sbjct: 246 TFTGLTALAALYLLDNQITSISANAFTDLTALTTLSLALNQITSISANAFTGLTTLAGLS 305
Query: 355 LDARQITDTGLAALTSLTGLTHLDLFGARIT 385
L QIT A T LT L LDL +IT
Sbjct: 306 LALNQITSISTNAFTGLTTLAGLDLALNQIT 336
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 82/287 (28%), Positives = 126/287 (43%), Gaps = 2/287 (0%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
QI+ + GL++L SL + +N IT+ AF+ L L L L
Sbjct: 94 QITAISPDAFAGLTSLNSL-YLSDNPITSISANAFSDLTELSYLHLSYTQLTDISANAFT 152
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
L L SLN+++ IT + L LK+L ++ +++T + GL L L L+
Sbjct: 153 TLPALVSLNLEFTQ-ITTISAAAFTSLAKLKNLSLNNNQITSVPESAFTGLTALVSLELD 211
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
+T+ + + L +L YL L +++ F+ + +L L L N+IT
Sbjct: 212 NNQITSISALAFANLTALSYLGLANNRITGISENTFTGLTALAALYLLDNQITSISANAF 271
Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 332
LT L +L+L I TGL L L L+ Q+ S +GLT L ++L+
Sbjct: 272 TDLTALTTLSLALNQITSISANAFTGLTTLAGLSLALNQITSISTNAFTGLTTLAGLDLA 331
Query: 333 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
I+ S GL++L L LD QI A T LT L +L L
Sbjct: 332 LNQITGISTNAFTGLTTLAVLRLDNNQIASISANAFTGLTMLFYLTL 378
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 66/206 (32%), Positives = 98/206 (47%), Gaps = 6/206 (2%)
Query: 183 KSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
K + + +++T GL L L L P+T+ ++ S L L YL+L+ QL+D
Sbjct: 86 KEVDLQSNQITAISPDAFAGLTSLNSLYLSDNPITSISANAFSDLTELSYLHLSYTQLTD 145
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
F+ + +L LNL F +IT L L++L+L++ I TGL L
Sbjct: 146 ISANAFTTLPALVSLNLEFTQITTISAAAFTSLAKLKNLSLNNNQITSVPESAFTGLTAL 205
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLS---FTGISDGSLRKLAGLSSLKSLNLDARQ 359
LEL + Q+ S + LT L + L+ TGIS+ + GL++L +L L Q
Sbjct: 206 VSLELDNNQITSISALAFANLTALSYLGLANNRITGISENTFT---GLTALAALYLLDNQ 262
Query: 360 ITDTGLAALTSLTGLTHLDLFGARIT 385
IT A T LT LT L L +IT
Sbjct: 263 ITSISANAFTDLTALTTLSLALNQIT 288
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 68/225 (30%), Positives = 96/225 (42%), Gaps = 11/225 (4%)
Query: 86 LDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCTR 143
L+F IS L L NL+ NN IT+ AF GL LV L+L+ + T
Sbjct: 162 LEFTQITTISAAAFTSLAKLKNLS----LNNNQITSVPESAFTGLTALVSLELDNNQITS 217
Query: 144 IHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKG 202
I NL L L N N IT +GLT L +L + +++T
Sbjct: 218 ISALAFANLTALSYLGLAN----NRITGISENTFTGLTALAALYLLDNQITSISANAFTD 273
Query: 203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 262
L LT L+L +T+ ++ + L +L L+L Q++ F+ + +L L+L N
Sbjct: 274 LTALTTLSLALNQITSISANAFTGLTTLAGLSLALNQITSISTNAFTGLTTLAGLDLALN 333
Query: 263 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 307
+IT GLT L L LD+ I TGL L L L
Sbjct: 334 QITGISTNAFTGLTTLAVLRLDNNQIASISANAFTGLTMLFYLTL 378
Score = 38.5 bits (88), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 45/92 (48%)
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
K ++L Q+ + +GLT+L S+ LS I+ S + L+ L L+L Q+TD
Sbjct: 86 KEVDLQSNQITAISPDAFAGLTSLNSLYLSDNPITSISANAFSDLTELSYLHLSYTQLTD 145
Query: 363 TGLAALTSLTGLTHLDLFGARITDSGAAYLRS 394
A T+L L L+L +IT AA S
Sbjct: 146 ISANAFTTLPALVSLNLEFTQITTISAAAFTS 177
>gi|71662333|ref|XP_818175.1| leucine-rich repeat protein (LRRP) [Trypanosoma cruzi strain CL
Brener]
gi|70883410|gb|EAN96324.1| leucine-rich repeat protein (LRRP), putative [Trypanosoma cruzi]
Length = 415
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 106/217 (48%), Gaps = 9/217 (4%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S SL S+DLS + VTD GL+ L C L+ +D + C I L ++ + L L
Sbjct: 166 SHLHSLKSLDLSRTGVTDDGLLALTACHLLEEVDLSGCDFIC--ALPFMKNMGCLRVLKL 223
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
RN+ IT + + A LV LD+ C + L L GL +LE +N WC I D +
Sbjct: 224 -RNSGITDRAISAIGAATALVHLDIAGCFLV-TSLNPLGGLKRLEWMNTSWCG-IRDGGV 280
Query: 174 KPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
+ LS NL+ L ++ C + + + L L KL +L+L G V + LS SL
Sbjct: 281 EGLSCCDNLEYLSMARCWDIHN--VNALGVLSKLQVLDLCGTNVDDEGIAGLSRCASLCS 338
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
LNL+ C + + SL+ +++ + +T+E L
Sbjct: 339 LNLSDC-FCIYSVRTLAAMPSLREMDVSYTAVTEESL 374
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 73/277 (26%), Positives = 131/277 (47%), Gaps = 19/277 (6%)
Query: 72 SGLIHLKDCSNLQSLDFNFCIQ--ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAG 129
S + L D +L+ L F F + + + L L L L R ++T ++A +
Sbjct: 110 SSIKDLTDVKDLRGLRFLFIPEAILLNKTLSPLASCPTLEHLWLRSCRSLTR--VEALSH 167
Query: 130 LINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISC 189
L +L LDL R GL+ L LE +++ C+ I + + + L+ L++
Sbjct: 168 LHSLKSLDLSRTGVTDDGLLALTACHLLEEVDLSGCDFIC--ALPFMKNMGCLRVLKLRN 225
Query: 190 SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 249
S +TD I+ + L L++ GC + + L+ L L L ++N + C + D G E S
Sbjct: 226 SGITDRAISAIGAATALVHLDIAGCFLVTS-LNPLGGLKRLEWMNTSWCGIRDGGVEGLS 284
Query: 250 KIGSLKVLNLGFNEITDECL-VH----LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 304
+L+ L++ C +H L L+ L+ L+L + DEG+ L+ +L
Sbjct: 285 CCDNLEYLSMA------RCWDIHNVNALGVLSKLQVLDLCGTNVDDEGIAGLSRCASLCS 338
Query: 305 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 341
L LSD S +R L+ + +L +++S+T +++ SL
Sbjct: 339 LNLSDCFCIYS-VRTLAAMPSLREMDVSYTAVTEESL 374
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 71/237 (29%), Positives = 106/237 (44%), Gaps = 30/237 (12%)
Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
LE L ++ C +T ++ LS L +LKSL +S + VTD G+ L L ++L GC
Sbjct: 148 LEHLWLRSCRSLTR--VEALSHLHSLKSLDLSRTGVTDDGLLALTACHLLEEVDLSGCDF 205
Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGL 275
A L + +G L L L ++D +L L++ G +T L L GL
Sbjct: 206 ICA-LPFMKNMGCLRVLKLRNSGITDRAISAIGAATALVHLDIAGCFLVTS--LNPLGGL 262
Query: 276 TNLESLNLDSCGIGDEGL----------------------VNLTG-LCNLKCLELSDTQV 312
LE +N CGI D G+ VN G L L+ L+L T V
Sbjct: 263 KRLEWMNTSWCGIRDGGVEGLSCCDNLEYLSMARCWDIHNVNALGVLSKLQVLDLCGTNV 322
Query: 313 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 369
G+ LS +L S+NLS S+R LA + SL+ +++ +T+ L+ L
Sbjct: 323 DDEGIAGLSRCASLCSLNLS-DCFCIYSVRTLAAMPSLREMDVSYTAVTEESLSLLP 378
Score = 37.7 bits (86), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 2/134 (1%)
Query: 254 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 313
L+ L + + ++ L L LE L L SC + L+ L +LK L+LS T V
Sbjct: 124 LRFLFIPEAILLNKTLSPLASCPTLEHLWLRSCR-SLTRVEALSHLHSLKSLDLSRTGVT 182
Query: 314 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 373
GL L+ LE ++LS +L + + L+ L L ITD ++A+ + T
Sbjct: 183 DDGLLALTACHLLEEVDLSGCDFI-CALPFMKNMGCLRVLKLRNSGITDRAISAIGAATA 241
Query: 374 LTHLDLFGARITDS 387
L HLD+ G + S
Sbjct: 242 LVHLDIAGCFLVTS 255
>gi|290892493|ref|ZP_06555487.1| internalin [Listeria monocytogenes FSL J2-071]
gi|404406817|ref|YP_006689532.1| hypothetical protein LMOSLCC2376_0334 [Listeria monocytogenes
SLCC2376]
gi|290558059|gb|EFD91579.1| internalin [Listeria monocytogenes FSL J2-071]
gi|404240966|emb|CBY62366.1| leucine-rich repeat domain protein (LPXTG motif) [Listeria
monocytogenes SLCC2376]
Length = 589
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 85/279 (30%), Positives = 141/279 (50%), Gaps = 29/279 (10%)
Query: 120 TAQGMKAFAGLINLVKLD-LERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
T G + A ++ LD + T G+ +L+G+ L +L + SD+ PL G
Sbjct: 54 TTLGKSSTAEVVTQTDLDTINSLTLTSKGISSLEGMNYLTNLGTLILSGNQVSDISPLKG 113
Query: 179 LTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTA-ACLDSLSALGSLFYLNLN 236
LTNL LQ+S + ++D S ++ LK LQ L + + + +T + L +L LG
Sbjct: 114 LTNLTMLQLSGNPISDISALSNLKNLQALDINDAQITDITPLSGLTNLKGLG-------- 165
Query: 237 RCQLSDDGCEKFSKIGS---LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
L D+ E S + + L+ LN+ N++T+ L L+ L+NL L + I + L
Sbjct: 166 ---LYDNQLENLSGVNNLHQLRSLNVSKNKLTN--LDELQALSNLGVLYANENQI--DNL 218
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
++ L NL L+LS Q+G + L+GLTN++++ +S ISD + GLSSL +L
Sbjct: 219 QGISALNNLFLLDLSANQIGDT--TPLAGLTNVQTLYVSNNQISD-----VTGLSSLINL 271
Query: 354 N-LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
+ LD Q + + L SLT LT + + I + ++
Sbjct: 272 DWLDISQNKISNIRPLNSLTKLTIIQMTNQLIVNEPISF 310
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 89/322 (27%), Positives = 138/322 (42%), Gaps = 89/322 (27%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
LSG+ V+D + LK +NL L Q+S + + LSNL
Sbjct: 100 LSGNQVSD--ISPLKGLTNLTML------QLSGNPISDISALSNLK-------------- 137
Query: 124 MKAFAGLINLVKLDLE--RCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGL 179
NL LD+ + T I GL NLKGL + D+ ++ LSG+
Sbjct: 138 --------NLQALDINDAQITDITPLSGLTNLKGL------------GLYDNQLENLSGV 177
Query: 180 TN---LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
N L+SL +S +K+T+ LD L AL +L L N
Sbjct: 178 NNLHQLRSLNVSKNKLTN--------------------------LDELQALSNLGVLYAN 211
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q+ D + S + +L +L+L N+I D L GLTN+++L + + I D + L
Sbjct: 212 ENQI--DNLQGISALNNLFLLDLSANQIGDTT--PLAGLTNVQTLYVSNNQISD--VTGL 265
Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT-----GISDGSLRKLAGL-SSL 350
+ L NL L++S ++ S +R L+ LT L I ++ IS S + L ++
Sbjct: 266 SSLINLDWLDISQNKI--SNIRPLNSLTKLTIIQMTNQLIVNEPISFESTITIPNLIKNI 323
Query: 351 KSLNLDARQITDTGLAALTSLT 372
+D I+D G+ A S+T
Sbjct: 324 AEQTIDPDTISDNGVYANESVT 345
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 92/189 (48%), Gaps = 28/189 (14%)
Query: 57 SSLLSVDLSGSDVTD-SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
++L + LSG+ ++D S L +LK NLQ+LD N QI+D + L GL+NL L
Sbjct: 115 TNLTMLQLSGNPISDISALSNLK---NLQALDINDA-QITD--ITPLSGLTNLKGLGLYD 168
Query: 116 NNAITAQGMKAFAGL--INLVKLDLERCTRIHG------------GLVNLKGLMKLESLN 161
N G+ L +N+ K L + + NL+G+ L +L
Sbjct: 169 NQLENLSGVNNLHQLRSLNVSKNKLTNLDELQALSNLGVLYANENQIDNLQGISALNNLF 228
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 221
+ + D PL+GLTN+++L +S ++++D + GL +L+NL+ ++ +
Sbjct: 229 LLDLSANQIGDTTPLAGLTNVQTLYVSNNQISD-----VTGLS--SLINLDWLDISQNKI 281
Query: 222 DSLSALGSL 230
++ L SL
Sbjct: 282 SNIRPLNSL 290
>gi|290979547|ref|XP_002672495.1| predicted protein [Naegleria gruberi]
gi|284086072|gb|EFC39751.1| predicted protein [Naegleria gruberi]
Length = 665
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 106/226 (46%), Gaps = 18/226 (7%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
IT ++ ++ L + + I+ ++ D G + + +++LT L++ T + + ++
Sbjct: 398 ITHEVLQNITKLEKVNYVDIAAIRIGDEGASMIGQMKQLTYLDI---SFTGISYNGMRSI 454
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
G L NL + S D E +S + V +HL+ L L L++
Sbjct: 455 GQL--TNLTQLIFSSDDYENYSAPKGVTVA------------IHLRNLKKLTHLDITYNE 500
Query: 288 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 347
IGDEG ++ L NL LE+ + Q+ + G + +S L NL +N+S + S++ L L
Sbjct: 501 IGDEGSQFISELLNLTYLEMPNNQLRNEGFKMISKLENLTHLNISNNDFNCESMKHLCEL 560
Query: 348 SSLKSLNLDARQITDTGLAALTS-LTGLTHLDLFGARITDSGAAYL 392
+L SL IT + + + L LT LDL I + GA Y+
Sbjct: 561 KNLTSLEAFNTGITSNDVKLIANHLKYLTELDLSCNDIGNEGAKYV 606
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 68/251 (27%), Positives = 116/251 (46%), Gaps = 14/251 (5%)
Query: 91 CIQISDGGLEHLRGLSNLTSL--SFRRNNAITAQGMKAFAGLINLVKL-----DLERCTR 143
I+I D G + + LT L SF I+ GM++ L NL +L D E +
Sbjct: 419 AIRIGDEGASMIGQMKQLTYLDISF---TGISYNGMRSIGQLTNLTQLIFSSDDYENYSA 475
Query: 144 IHGGLV--NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLK 201
G V +L+ L KL L+I + N I D + +S L NL L++ +++ + G +
Sbjct: 476 PKGVTVAIHLRNLKKLTHLDITY-NEIGDEGSQFISELLNLTYLEMPNNQLRNEGFKMIS 534
Query: 202 GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN-LNRCQLSDDGCEKFSKIGSLKVLNLG 260
L+ LT LN+ + L L +L L N S+D + + L L+L
Sbjct: 535 KLENLTHLNISNNDFNCESMKHLCELKNLTSLEAFNTGITSNDVKLIANHLKYLTELDLS 594
Query: 261 FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 320
N+I +E ++ L L+SL L + EG+ L L L L++S+ + + ++L
Sbjct: 595 CNDIGNEGAKYVSELKQLQSLQLAQTNLDSEGVKYLVRLDQLTDLDVSENSIDAERCKYL 654
Query: 321 SGLTNLESINL 331
+ + LE +++
Sbjct: 655 NEMKQLEELSI 665
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 64/133 (48%), Gaps = 7/133 (5%)
Query: 263 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 322
+IT E L ++ L + +++ + IGDEG + + L L++S T + +G+R +
Sbjct: 397 KITHEVLQNITKLEKVNYVDIAAIRIGDEGASMIGQMKQLTYLDISFTGISYNGMRSIGQ 456
Query: 323 LTNLESINLSFTGISDGSLRK-------LAGLSSLKSLNLDARQITDTGLAALTSLTGLT 375
LTNL + S + S K L L L L++ +I D G ++ L LT
Sbjct: 457 LTNLTQLIFSSDDYENYSAPKGVTVAIHLRNLKKLTHLDITYNEIGDEGSQFISELLNLT 516
Query: 376 HLDLFGARITDSG 388
+L++ ++ + G
Sbjct: 517 YLEMPNNQLRNEG 529
>gi|428304293|ref|YP_007141118.1| hypothetical protein Cri9333_0672 [Crinalium epipsammum PCC 9333]
gi|428245828|gb|AFZ11608.1| leucine-rich repeat-containing protein [Crinalium epipsammum PCC
9333]
Length = 353
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 76/229 (33%), Positives = 119/229 (51%), Gaps = 22/229 (9%)
Query: 171 SDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTA-ACLDSLSALG 228
SD++P S LTNL+ L + K+TD + IA L L+ L + + +T A L++L+ LG
Sbjct: 86 SDLRPFSSLTNLRKLSLFSHKITDLTPIANLPNLEVLVIHSNALTDLTPIASLNNLTDLG 145
Query: 229 SL--------FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT--DECLVHLKGLTNL 278
+ + NL + Q I +LK L + E++ + + L L NL
Sbjct: 146 LIGRNITDIRPFANLTQLQKFTLWYSSIQNIDALKDL-IQLTEVSFINTQISDLSSLANL 204
Query: 279 ESLN-LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 337
++L L+ + + L+GL NL+ LEL + Q+ + ++ +S LTNL+S+ L+ I
Sbjct: 205 KTLAILEVNSSKVKNIQPLSGLSNLRKLELQNNQI--TNIKAISSLTNLKSLKLNRNQIW 262
Query: 338 DGSLRKLAGLSSLKSLNLDARQITD-TGLAALTSLTGLTHLDLFGARIT 385
D LR L+ L L S++L QI D T LAALT L ++ L RIT
Sbjct: 263 D--LRSLSNLKKLVSISLSHNQIVDVTPLAALTDLETIS---LQNNRIT 306
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 95/209 (45%), Gaps = 40/209 (19%)
Query: 98 GLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
+ +R +NLT L + Q + A LI L ++ I+ + +L L L
Sbjct: 150 NITDIRPFANLTQLQKFTLWYSSIQNIDALKDLIQLTEVSF-----INTQISDLSSLANL 204
Query: 158 ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
++L I N +++PLSGL+NL+ L++ +++T+
Sbjct: 205 KTLAILEVNSSKVKNIQPLSGLSNLRKLELQNNQITN----------------------- 241
Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 277
+ ++S+L +L L LNR Q+ D S + L ++L N+I D + L LT+
Sbjct: 242 ---IKAISSLTNLKSLKLNRNQIWD--LRSLSNLKKLVSISLSHNQIVD--VTPLAALTD 294
Query: 278 LESLNLDSCGIGDEGLVNLTGLCNLKCLE 306
LE+++L + I ++ L +LK LE
Sbjct: 295 LETISLQNNRI-----TSIQSLASLKKLE 318
>gi|186472580|ref|YP_001859922.1| hypothetical protein Bphy_3741 [Burkholderia phymatum STM815]
gi|184194912|gb|ACC72876.1| hypothetical protein Bphy_3741 [Burkholderia phymatum STM815]
Length = 421
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 94/309 (30%), Positives = 152/309 (49%), Gaps = 31/309 (10%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
+L S+DL+G+ + + + LKD +L+ L + + L+ L GL +LT R +N
Sbjct: 128 TLESLDLTGTPIWN--IDALKDMHSLKRLVLHRTEVENIAALKGLTGLQSLTLWDTRVSN 185
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
+ A L +L +LDL R T++ L L+ L +L++L + + D D L
Sbjct: 186 ------LDALKSLTDLRQLDL-RDTQVRD-LDPLEDLPRLDTLKLGGARNVRDIDA--LG 235
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
LT+LK+L ++ ++V I LK L+ + L L P+ +D++ + SL L L+
Sbjct: 236 QLTSLKTLDLNETQV--DSIKPLKKLRDMQALYLANTPLRD--IDAIKNMPSLKTLVLDG 291
Query: 238 CQLSD-DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
++ D DG ++ +L + I LKGLT L+ LNL + + + L
Sbjct: 292 SRVDDIDGVRGLQQMDTLVLARTQIANID-----ALKGLTGLQRLNLADTRV--DNIDAL 344
Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL- 355
L NL+ L L T+V + L GLTNL+ + L+ T I D + L GLS L+ L L
Sbjct: 345 RDLKNLRMLNLFRTRV--RNVDALRGLTNLQELYLANTPIDDVDV--LKGLSGLRELVLY 400
Query: 356 --DARQITD 362
AR + D
Sbjct: 401 GTKARNVDD 409
>gi|421888173|ref|ZP_16319281.1| leucine-rich-repeat type III effector protein (GALA4) [Ralstonia
solanacearum K60-1]
gi|378966462|emb|CCF96029.1| leucine-rich-repeat type III effector protein (GALA4) [Ralstonia
solanacearum K60-1]
Length = 466
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 89/185 (48%), Gaps = 7/185 (3%)
Query: 203 LQKLTL----LNLEGC--PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 256
LQ+L L+L C P+TAA + L AL L L++ C+L+ D + +L
Sbjct: 143 LQRLPPSLRELDLSQCTGPITAAGIARLLAL-PLDRLDVGGCRLNADSARLLAGHPTLTA 201
Query: 257 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 316
L++ N I D + L +LN S GIG G+ L + L++SD ++G G
Sbjct: 202 LDIRRNAIGDAGVAAFARNKKLTALNASSNGIGPAGVRALAANTTIATLDISDNEIGDEG 261
Query: 317 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 376
R L+G T L ++ S +GI R LA +L SL+L +I G AL T LT
Sbjct: 262 ARALAGHTALTKLDASDSGIGPEGTRALATSMTLASLDLSYNEIGAEGAEALGENTTLTT 321
Query: 377 LDLFG 381
L + G
Sbjct: 322 LHVCG 326
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 83/171 (48%), Gaps = 5/171 (2%)
Query: 168 ITDSDMKPLSGLTNLKSLQIS--CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
+D+D++ L +L+ L +S +T +GIA L L L L++ GC + A L+
Sbjct: 138 FSDADLQRLP--PSLRELDLSQCTGPITAAGIARLLAL-PLDRLDVGGCRLNADSARLLA 194
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
+L L++ R + D G F++ L LN N I + L T + +L++
Sbjct: 195 GHPTLTALDIRRNAIGDAGVAAFARNKKLTALNASSNGIGPAGVRALAANTTIATLDISD 254
Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 336
IGDEG L G L L+ SD+ +G G R L+ L S++LS+ I
Sbjct: 255 NEIGDEGARALAGHTALTKLDASDSGIGPEGTRALATSMTLASLDLSYNEI 305
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 79/289 (27%), Positives = 125/289 (43%), Gaps = 36/289 (12%)
Query: 133 LVKLDLERCTRIHGGLVNLKGLMKL-----ESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
L +LDL +CT G + G+ +L + L++ C DS + L+G L +L I
Sbjct: 150 LRELDLSQCT----GPITAAGIARLLALPLDRLDVGGCRLNADS-ARLLAGHPTLTALDI 204
Query: 188 SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 247
+ + D+G+A +KLT LN + A + +L+A ++ L+++ ++ D+G
Sbjct: 205 RRNAIGDAGVAAFARNKKLTALNASSNGIGPAGVRALAANTTIATLDISDNEIGDEGARA 264
Query: 248 F-------------SKIG-----------SLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
S IG +L L+L +NEI E L T L +L++
Sbjct: 265 LAGHTALTKLDASDSGIGPEGTRALATSMTLASLDLSYNEIGAEGAEALGENTTLTTLHV 324
Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
+G L L L+LS +GS+G R T L +NLS GI +
Sbjct: 325 CGNALGHREAALLAASATLTTLDLSSNAIGSAGARAFGTNTTLTKLNLSNNGIE--RVSA 382
Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
A S L L++ +I D L LT L+ RI D+GA+ L
Sbjct: 383 WANNSKLTKLDISNNRIGDAAAQVLADSRTLTTLNASSNRIGDAGASAL 431
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 67/282 (23%), Positives = 119/282 (42%), Gaps = 23/282 (8%)
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
+ A + AG L LD+ R G+ KL +LN N I + ++ L+
Sbjct: 185 LNADSARLLAGHPTLTALDIRRNAIGDAGVAAFARNKKLTALNAS-SNGIGPAGVRALAA 243
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
T + +L IS +++ D G L G LT L+ + +L+ +L L+L+
Sbjct: 244 NTTIATLDISDNEIGDEGARALAGHTALTKLDASDSGIGPEGTRALATSMTLASLDLSYN 303
Query: 239 QLSDDGCEKFSKIGSLKVLN-----LGFNEITDECLVHLKGLTNLESLNLDSCG------ 287
++ +G E + +L L+ LG E +L S + S G
Sbjct: 304 EIGAEGAEALGENTTLTTLHVCGNALGHREAALLAASATLTTLDLSSNAIGSAGARAFGT 363
Query: 288 --------IGDEGLVNLTGLCN---LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 336
+ + G+ ++ N L L++S+ ++G + + L+ L ++N S I
Sbjct: 364 NTTLTKLNLSNNGIERVSAWANNSKLTKLDISNNRIGDAAAQVLADSRTLTTLNASSNRI 423
Query: 337 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 378
D LAG ++L +LN+ +I + GL AL + T L L+
Sbjct: 424 GDAGASALAGNTTLATLNVSFNRIGEAGLLALEANTTLKKLE 465
>gi|422414802|ref|ZP_16491759.1| internalin A, partial [Listeria innocua FSL J1-023]
gi|313625220|gb|EFR95067.1| internalin A [Listeria innocua FSL J1-023]
Length = 435
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 87/276 (31%), Positives = 140/276 (50%), Gaps = 23/276 (8%)
Query: 120 TAQGMKAFAGLINLVKLD-LERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
T G + A ++ LD + T G+ +++G+ L +L + SD+ PL G
Sbjct: 54 TTLGKSSTAEVVTQTDLDTINSLTLTSKGISSIEGMNYLNNLGTLILSGNQVSDISPLKG 113
Query: 179 LTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
LTNL LQ+S + ++D S ++ LK LQ L + N + +T LS L +L L L
Sbjct: 114 LTNLTMLQLSENPISDISALSNLKNLQALDINNAQITDITP-----LSGLTNLKGLGLYN 168
Query: 238 CQLSD-DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
QL + G ++ SL V N N++T+ L L+ L+NL L + IG+ L +
Sbjct: 169 NQLENLSGVNNLQQLRSLNVSN---NKLTN--LDDLQALSNLGVLYANGNQIGN--LQGI 221
Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN-L 355
+ L NL L+LS Q+ + L+GLTN++++ +S ISD + GLSSL +L+ L
Sbjct: 222 SALKNLFLLDLSANQIVDT--TPLAGLTNIQTLYVSNNQISD-----VTGLSSLINLDWL 274
Query: 356 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
D Q + + L SLT LT + + I + ++
Sbjct: 275 DISQNKISNIRPLNSLTKLTIIQMTDQSIVNEPISF 310
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 84/321 (26%), Positives = 141/321 (43%), Gaps = 87/321 (27%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSL-SFRRNNAITAQ 122
LSG+ V+D + LK +NL L Q+S+ + + LSNL +L + NNA
Sbjct: 100 LSGNQVSD--ISPLKGLTNLTML------QLSENPISDISALSNLKNLQALDINNA---- 147
Query: 123 GMKAFAGLINLVKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
+ T I GL NLKGL + ++ ++ LSG+
Sbjct: 148 -----------------QITDITPLSGLTNLKGL------------GLYNNQLENLSGVN 178
Query: 181 N---LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
N L+SL +S +K+T+ LD L AL +L L N
Sbjct: 179 NLQQLRSLNVSNNKLTN--------------------------LDDLQALSNLGVLYANG 212
Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
Q+ + + S + +L +L+L N+I D L GLTN+++L + + I D + L+
Sbjct: 213 NQIGN--LQGISALKNLFLLDLSANQIVDTT--PLAGLTNIQTLYVSNNQISD--VTGLS 266
Query: 298 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS------SLK 351
L NL L++S ++ S +R L+ LT L I ++ I + + + ++ ++
Sbjct: 267 SLINLDWLDISQNKI--SNIRPLNSLTKLTIIQMTDQSIVNEPISFESTVTIPNLIKNIA 324
Query: 352 SLNLDARQITDTGLAALTSLT 372
+D I+D G+ A S+T
Sbjct: 325 EQTIDPDTISDNGVYANESVT 345
>gi|89111184|dbj|BAE80273.1| leucine-rich repeat protein [Acidovorax avenae subsp. avenae]
Length = 547
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 87/352 (24%), Positives = 153/352 (43%), Gaps = 13/352 (3%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
++ S L +++L+ + G L +L +L + C ++ GL + L L+ L
Sbjct: 187 ARHSRLATLELAHVPLDAEGARALAGAGSLATLRLDHC-GLTPEGLAAVSSLPRLSRLQA 245
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
R N + + A GL +LV+LDL+ G + + L +L++ N + D
Sbjct: 246 R-GNGLGPEAAPALPGLRSLVELDLDGNRLGAEGAAVIARMQGLRTLSLN-HNALGDDGA 303
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
+ L+ L L++L + +++ +G A L L L+L + A + +L+ L
Sbjct: 304 RALAALPGLQTLSVQANQIGAAGAAALARGPALRALDLHRNRLGDAGVRALAGGTRWQQL 363
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+L R + +G + + +L L + N + D L +L L+ C IGD G
Sbjct: 364 DLARNGIGAEGAAALAHLPALDTLVIAHNPLGDAGAGALAASDSLRFLDAGDCRIGDTGA 423
Query: 294 VNLTGLCNLKCLELSDT-----QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 348
L+ L L L+++ ++G G L+ +LE I+L + R A
Sbjct: 424 SALSRCPQLASLVLNNSSAEGVRIGERGALALAASPSLEEIDLEGHAVGSAGARAFAANP 483
Query: 349 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS-----GAAYLRSK 395
L+ L L Q+ + G AL L LDL+ R+TD GA +LR +
Sbjct: 484 RLRRLGLARNQVGNAGAHALAGSASLASLDLWDNRVTDKALHSRGAPWLRRR 535
>gi|242071889|ref|XP_002451221.1| hypothetical protein SORBIDRAFT_05g026000 [Sorghum bicolor]
gi|241937064|gb|EES10209.1| hypothetical protein SORBIDRAFT_05g026000 [Sorghum bicolor]
Length = 569
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 99/370 (26%), Positives = 175/370 (47%), Gaps = 34/370 (9%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR 103
++D ++++A + L SVD+S VT+ L L L+ + C+ I D GL+ L
Sbjct: 140 ISDIGVELLAKKCPQLRSVDISYLKVTNESLRSLSTLEKLEDIAMVGCLFIDDDGLQMLS 199
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLD-LERCTRIHGGLVNLKGL----MKLE 158
++L + + + +++LD LE I NL+ + L
Sbjct: 200 MCNSLQEI-----ETCLLSKLSTIGETLTVLRLDGLE----IFAS--NLQAIGSTCKNLV 248
Query: 159 SLNIKWCNCITDSDMKPL-SGLTNLKSLQISCSKV--TDSGIAYLKGLQKLTLLNLEGCP 215
+ + CN ITD + L + +L+++ ++C + D+ A + +K+ L LE CP
Sbjct: 249 EIGLSKCNGITDDGIVSLVAHCCDLRTIDVTCCHLLTNDALAAIAENCRKIECLQLESCP 308
Query: 216 -VTAACLDSLSALGS-LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHL 272
++ L+ ++ L S L ++L C+++D + + L +L LG + I+DE LV++
Sbjct: 309 FISEKGLERITTLCSHLKEIDLTDCRINDTALKHLASCSELLILKLGLCSSISDEGLVYI 368
Query: 273 KG-LTNLESLNLDSC-GIGDEGLVNLTGLC-NLKCLELSD-TQVGSSGLRHLSGLTNLES 328
L L+L C GI D+GL + C ++ L L TQ+ +GL+H+S L L +
Sbjct: 369 SSNCGKLVELDLYRCSGITDDGLAAVASGCKKIRVLNLCYCTQITDAGLKHVSALEELTN 428
Query: 329 INL----SFTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLT-GLTHLDLFGA 382
+ L TGI S+ G +SL L+L + D GL AL+ + L L +
Sbjct: 429 LELRCLVRITGIGITSIA--IGCTSLIELDLKRCYSVDDAGLWALSRYSQNLRQLTISYC 486
Query: 383 RITDSGAAYL 392
++T G +L
Sbjct: 487 QVTGLGLCHL 496
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 65/237 (27%), Positives = 99/237 (41%), Gaps = 50/237 (21%)
Query: 42 PGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEH 101
P +++K ++ I + S L +DL+ + D+ L HL CS L L C ISD GL +
Sbjct: 308 PFISEKGLERITTLCSHLKEIDLTDCRINDTALKHLASCSELLILKLGLCSSISDEGLVY 367
Query: 102 LRG-LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 160
+ L L R + IT G+ A A G K+ L
Sbjct: 368 ISSNCGKLVELDLYRCSGITDDGLAAVAS-----------------------GCKKIRVL 404
Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQISC-SKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
N+ +C ITD+ +K +S L L +L++ C ++T GI + GC
Sbjct: 405 NLCYCTQITDAGLKHVSALEELTNLELRCLVRITGIGITSIA----------IGCT---- 450
Query: 220 CLDSLSALGSLFYLNLNRCQLSDD-GCEKFSKIG-SLKVLNLGFNEITDECLVHLKG 274
SL L+L RC DD G S+ +L+ L + + ++T L HL G
Sbjct: 451 ---------SLIELDLKRCYSVDDAGLWALSRYSQNLRQLTISYCQVTGLGLCHLLG 498
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 98/368 (26%), Positives = 168/368 (45%), Gaps = 66/368 (17%)
Query: 83 LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM-KAFAGLINLVKLDLERC 141
L SLD + C + D L + L+ RR +T G+ K G L +L ++ C
Sbjct: 78 LSSLDLSACAGLDDASLAAALPEAPAPLLAVRRCLGVTDVGLAKVAVGCPGLERLSVKWC 137
Query: 142 TRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL-QISCSKVTDSGIA 198
I V L K +L S++I + +T+ ++ LS L L+ + + C + D G+
Sbjct: 138 REISDIGVELLAKKCPQLRSVDISYLK-VTNESLRSLSTLEKLEDIAMVGCLFIDDDGLQ 196
Query: 199 YLK---GLQK---------------LTLLNLEGCPVTAACLDSLSALGS----LFYLNLN 236
L LQ+ LT+L L+G + A+ +L A+GS L + L+
Sbjct: 197 MLSMCNSLQEIETCLLSKLSTIGETLTVLRLDGLEIFAS---NLQAIGSTCKNLVEIGLS 253
Query: 237 RCQ-LSDDGCEKF-SKIGSLKVLNLGFNEI-TDECLVHL-KGLTNLESLNLDSCG-IGDE 291
+C ++DDG + L+ +++ + T++ L + + +E L L+SC I ++
Sbjct: 254 KCNGITDDGIVSLVAHCCDLRTIDVTCCHLLTNDALAAIAENCRKIECLQLESCPFISEK 313
Query: 292 GLVNLTGLC-NLKCLELSDTQVGSSGLRHLSGLTNLESINLSF----------------- 333
GL +T LC +LK ++L+D ++ + L+HL+ + L + L
Sbjct: 314 GLERITTLCSHLKEIDLTDCRINDTALKHLASCSELLILKLGLCSSISDEGLVYISSNCG 373
Query: 334 ----------TGISDGSLRKLA-GLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFG 381
+GI+D L +A G ++ LNL QITD GL +++L LT+L+L
Sbjct: 374 KLVELDLYRCSGITDDGLAAVASGCKKIRVLNLCYCTQITDAGLKHVSALEELTNLELRC 433
Query: 382 -ARITDSG 388
RIT G
Sbjct: 434 LVRITGIG 441
>gi|320168281|gb|EFW45180.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 794
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 81/293 (27%), Positives = 124/293 (42%), Gaps = 14/293 (4%)
Query: 103 RGLSNL--------TSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVNLK 152
RGL+ + T+LS N IT+ AF+GL L L L + T I
Sbjct: 44 RGLTTIPSGIPVETTTLSLYSNQ-ITSIPANAFSGLTALATLMLHGNQITSIPANA--FS 100
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
GL L +L + + N IT + L L SL + ++++ GL LT L L
Sbjct: 101 GLTALNTLQL-FSNQITSIPANAFADLAALTSLDLFVNQISSIPANAFTGLSALTQLRLN 159
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
+T+ + + L SL L L+ QL+ F+ + +L L LG N +T
Sbjct: 160 TNQITSIPDNVFADLTSLNGLGLSSNQLTVISANAFNGLTALTSLMLGLNPMTVFPSAAF 219
Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 332
LT LESL +++ I L L + L D + + +GL+ L+ I L
Sbjct: 220 ASLTALESLQMEAGQIASISADTFPDLTALTSINLRDNPITTIAANAFTGLSALKMIYLQ 279
Query: 333 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
I+ S GL++L +L+L QI + LT L ++ L R+T
Sbjct: 280 NNLITSISATAFTGLTALTALDLSVNQINSLSANTFSGLTALLYVHLGANRLT 332
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 76/277 (27%), Positives = 118/277 (42%), Gaps = 5/277 (1%)
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
GL+ LTSL N +T AFA L L L +E L L S+N
Sbjct: 195 FNGLTALTSLMLGLN-PMTVFPSAAFASLTALESLQMEAGQIASISADTFPDLTALTSIN 253
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 221
++ N IT +GL+ LK + + + +T GL LT L+L + +
Sbjct: 254 LRD-NPITTIAANAFTGLSALKMIYLQNNLITSISATAFTGLTALTALDLSVNQINSLSA 312
Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 281
++ S L +L Y++L +L+ + +++ + ++L N I+ GLT L L
Sbjct: 313 NTFSGLTALLYVHLGANRLTSIPADALARLPAGAGVDLSKNLISSVSADEFAGLTALGGL 372
Query: 282 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 341
L S I + L L L + + S +GLT L+ + L I+ +
Sbjct: 373 VLSSNLITTIPAGAFASMNALILLALDNNTITSISANAFTGLTALQYLYLGLNQITSIPV 432
Query: 342 RKLAGLSSLKSLNLDARQITD---TGLAALTSLTGLT 375
L++L+ L LD QIT T A LT+L GLT
Sbjct: 433 DAFTSLTALQYLRLDGNQITSVPATAFADLTALVGLT 469
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 83/302 (27%), Positives = 123/302 (40%), Gaps = 6/302 (1%)
Query: 90 FCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCTRIHGG 147
F QI+ L+ LTSL N I++ AF GL L +L L + T I
Sbjct: 111 FSNQITSIPANAFADLAALTSLDLFVNQ-ISSIPANAFTGLSALTQLRLNTNQITSIPDN 169
Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 207
+ L L L + N +T +GLT L SL + + +T A L L
Sbjct: 170 V--FADLTSLNGLGLS-SNQLTVISANAFNGLTALTSLMLGLNPMTVFPSAAFASLTALE 226
Query: 208 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 267
L +E + + D+ L +L +NL ++ F+ + +LK++ L N IT
Sbjct: 227 SLQMEAGQIASISADTFPDLTALTSINLRDNPITTIAANAFTGLSALKMIYLQNNLITSI 286
Query: 268 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 327
GLT L +L+L I +GL L + L ++ S L+ L
Sbjct: 287 SATAFTGLTALTALDLSVNQINSLSANTFSGLTALLYVHLGANRLTSIPADALARLPAGA 346
Query: 328 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 387
++LS IS S + AGL++L L L + IT A S+ L L L IT
Sbjct: 347 GVDLSKNLISSVSADEFAGLTALGGLVLSSNLITTIPAGAFASMNALILLALDNNTITSI 406
Query: 388 GA 389
A
Sbjct: 407 SA 408
>gi|325111037|ref|YP_004272105.1| hypothetical protein Plabr_4512 [Planctomyces brasiliensis DSM
5305]
gi|324971305|gb|ADY62083.1| hypothetical protein Plabr_4512 [Planctomyces brasiliensis DSM
5305]
Length = 407
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 109/221 (49%), Gaps = 10/221 (4%)
Query: 184 SLQISCSKV--TDSGIAYLKGLQKLTLL-NLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
+L++ C + D + LK +K T++ +L ++ LDSL L L L ++
Sbjct: 75 TLELDCRRAHFPDGSLELLKVFEKQTVIVDLSLSNISDDSLDSLKDFNRLEVLILAHTRI 134
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL-TGL 299
+ ++ S I SL L+L E DE + L L L+ L + + + ++G L T +
Sbjct: 135 TGSRLDQLSSITSLHTLDLTAIEFDDESVPSLASLRQLQRLKVPTSKLSEDGFALLCTRM 194
Query: 300 CNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSFT-GISDGSLRKLAGLSSLKSLNLDA 357
L+ L+LS + V +S L HL+ + L + +SF I D ++ LAGL +LK L+L+
Sbjct: 195 PFLRSLDLSGRRGVANSWLTHLAKMPRLNVLGVSFAKNIDDDAIPLLAGLPALKWLSLEG 254
Query: 358 RQITDTGLAALTSLTGLTHLDL----FGARITDSGAAYLRS 394
IT AAL +LT L L L F A T + LRS
Sbjct: 255 TSITGMFPAALGNLTNLDTLSLAHCTFNAPQTLESLSKLRS 295
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 88/324 (27%), Positives = 146/324 (45%), Gaps = 41/324 (12%)
Query: 26 EAFRDCALQDL-CL-GQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNL 83
E++RD + +L C +P + + + V Q + VDLS S+++D L LKD + L
Sbjct: 68 ESYRDASTLELDCRRAHFPDGSLELLKVFEKQT---VIVDLSLSNISDDSLDSLKDFNRL 124
Query: 84 QSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA--QGMKAFAGLINLVKLDLER- 140
+ L +I+ L+ L +++L +L AI + + + A L L +L +
Sbjct: 125 EVLILAHT-RITGSRLDQLSSITSLHTLDL---TAIEFDDESVPSLASLRQLQRLKVPTS 180
Query: 141 ----------CTRI---------------HGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
CTR+ + L +L + +L L + + I D +
Sbjct: 181 KLSEDGFALLCTRMPFLRSLDLSGRRGVANSWLTHLAKMPRLNVLGVSFAKNIDDDAIPL 240
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA-CLDSLSALGSLFYLN 234
L+GL LK L + + +T A L L L L+L C A L+SLS L SL LN
Sbjct: 241 LAGLPALKWLSLEGTSITGMFPAALGNLTNLDTLSLAHCTFNAPQTLESLSKLRSLKQLN 300
Query: 235 LNRCQLSDDGCEKFSK-IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
LN C+ + KF + + L+ + L +TD L L+ L+ ++L C IG E +
Sbjct: 301 LNDCK--NITSLKFLRGMSHLEAIGLKNTNLTDAILKELQYCLQLKYVDLTRCRIGKETI 358
Query: 294 VNLTGLCNLKCLELSDTQVGSSGL 317
++ L L+ + LS TQ+ S +
Sbjct: 359 STISQLKLLQTISLSGTQIDSDNI 382
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 97/218 (44%), Gaps = 29/218 (13%)
Query: 59 LLSVDLSGSD-VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
L S+DLSG V +S L HL L L +F I D + L GL L LS
Sbjct: 197 LRSLDLSGRRGVANSWLTHLAKMPRLNVLGVSFAKNIDDDAIPLLAGLPALKWLSLE-GT 255
Query: 118 AITAQGMKAFAGLINLVKLDLERCT-RIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+IT A L NL L L CT L +L L L+ LN+ C IT +K L
Sbjct: 256 SITGMFPAALGNLTNLDTLSLAHCTFNAPQTLESLSKLRSLKQLNLNDCKNITS--LKFL 313
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
G+++L+++ + + +TD A LK LQ CL L Y++L
Sbjct: 314 RGMSHLEAIGLKNTNLTD---AILKELQ--------------YCL-------QLKYVDLT 349
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 274
RC++ + S++ L+ ++L +I + ++ ++
Sbjct: 350 RCRIGKETISTISQLKLLQTISLSGTQIDSDNIIPIRS 387
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 77/304 (25%), Positives = 129/304 (42%), Gaps = 32/304 (10%)
Query: 112 SFRRNNAITAQGMKAFA-GLINLVKLDLERCTRIH---GGLVNLKGLMKLESLNIKWCNC 167
S R + IT + + A A + L+L+ C R H G L LK K + +
Sbjct: 51 SIRLSGLITQERIDAIAESYRDASTLELD-CRRAHFPDGSLELLKVFEKQTVIVDLSLSN 109
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
I+D + L L+ L ++ +++T S + L + L L+L + SL++L
Sbjct: 110 ISDDSLDSLKDFNRLEVLILAHTRITGSRLDQLSSITSLHTLDLTAIEFDDESVPSLASL 169
Query: 228 GSLFYLNLNRCQLSDDGCEKF-SKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLD- 284
L L + +LS+DG +++ L+ L+L G + + L HL + L L +
Sbjct: 170 RQLQRLKVPTSKLSEDGFALLCTRMPFLRSLDLSGRRGVANSWLTHLAKMPRLNVLGVSF 229
Query: 285 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG----- 339
+ I D+ + L GL LK L L T + L LTNL++++L+ +
Sbjct: 230 AKNIDDDAIPLLAGLPALKWLSLEGTSITGMFPAALGNLTNLDTLSLAHCTFNAPQTLES 289
Query: 340 -------------------SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 380
SL+ L G+S L+++ L +TD L L L ++DL
Sbjct: 290 LSKLRSLKQLNLNDCKNITSLKFLRGMSHLEAIGLKNTNLTDAILKELQYCLQLKYVDLT 349
Query: 381 GARI 384
RI
Sbjct: 350 RCRI 353
>gi|386333501|ref|YP_006029671.1| type III effector gala6 protein [Ralstonia solanacearum Po82]
gi|334195950|gb|AEG69135.1| type III effector gala6 protein [Ralstonia solanacearum Po82]
Length = 462
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 86/326 (26%), Positives = 145/326 (44%), Gaps = 20/326 (6%)
Query: 70 TDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN----AITAQGMK 125
TD+ L L L+ LD + C +G + + G+++L +L R + + A +
Sbjct: 135 TDADLQRLPPY--LRELDLSLC----EGPITAV-GIAHLLALPLDRLDVSGCGLNADSAR 187
Query: 126 AFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
AG L L+L R G+ KL +LN+ N I + ++ L+ T + +L
Sbjct: 188 LLAGHATLTALNLRRNAIGDAGVAAFARNKKLTTLNVS-GNGIGPAGVRALAANTTITTL 246
Query: 186 QISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 245
IS +++ D G L LT L+ C + +L+ +L L+L+ ++ +G
Sbjct: 247 DISDNEIGDEGARALASNAALTRLDASDCGIGPDGTQALATSTTLTSLDLSYNEIEAEGV 306
Query: 246 EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 305
E + +L+ L+ NE+ L T L LNL S IG+ G L L
Sbjct: 307 EALGRNTTLRTLHACGNELGHREAELLAASTTLTVLNLSSNAIGNAGARAFGANTTLAEL 366
Query: 306 ELSDTQVGSSGLRHLSGLTN---LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
LS+ +G+ + + L +++LS I D + + LA +L +LN+ + +I D
Sbjct: 367 NLSN-----NGIERVPAWADTGKLTTLDLSNNRIGDAAAQVLAASRTLTTLNVGSNRIGD 421
Query: 363 TGLAALTSLTGLTHLDLFGARITDSG 388
G AL T L LD+ RI +G
Sbjct: 422 AGACALAGNTTLATLDVSLNRIGKAG 447
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 68/244 (27%), Positives = 111/244 (45%), Gaps = 3/244 (1%)
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK 205
GG+ + L+ L + TD+D++ L L + +T GIA+L L
Sbjct: 114 GGIPSPDDYPALQKLTL--IGPFTDADLQRLPPYLRELDLSLCEGPITAVGIAHLLAL-P 170
Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265
L L++ GC + A L+ +L LNL R + D G F++ L LN+ N I
Sbjct: 171 LDRLDVSGCGLNADSARLLAGHATLTALNLRRNAIGDAGVAAFARNKKLTTLNVSGNGIG 230
Query: 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 325
+ L T + +L++ IGDEG L L L+ SD +G G + L+ T
Sbjct: 231 PAGVRALAANTTITTLDISDNEIGDEGARALASNAALTRLDASDCGIGPDGTQALATSTT 290
Query: 326 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
L S++LS+ I + L ++L++L+ ++ L + T LT L+L I
Sbjct: 291 LTSLDLSYNEIEAEGVEALGRNTTLRTLHACGNELGHREAELLAASTTLTVLNLSSNAIG 350
Query: 386 DSGA 389
++GA
Sbjct: 351 NAGA 354
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 71/261 (27%), Positives = 116/261 (44%), Gaps = 31/261 (11%)
Query: 155 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 214
+ L+ L++ C DS + L+G L +L + + + D+G+A +KLT LN+ G
Sbjct: 169 LPLDRLDVSGCGLNADS-ARLLAGHATLTALNLRRNAIGDAGVAAFARNKKLTTLNVSGN 227
Query: 215 PVTAACLDSLSA-------------LG-----------SLFYLNLNRCQLSDDGCEKFSK 250
+ A + +L+A +G +L L+ + C + DG + +
Sbjct: 228 GIGPAGVRALAANTTITTLDISDNEIGDEGARALASNAALTRLDASDCGIGPDGTQALAT 287
Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG--IGDEGLVNLTGLCNLKCLELS 308
+L L+L +NEI E + L T L +L+ +CG +G L L L LS
Sbjct: 288 STTLTSLDLSYNEIEAEGVEALGRNTTLRTLH--ACGNELGHREAELLAASTTLTVLNLS 345
Query: 309 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 368
+G++G R T L +NLS GI + A L +L+L +I D L
Sbjct: 346 SNAIGNAGARAFGANTTLAELNLSNNGIE--RVPAWADTGKLTTLDLSNNRIGDAAAQVL 403
Query: 369 TSLTGLTHLDLFGARITDSGA 389
+ LT L++ RI D+GA
Sbjct: 404 AASRTLTTLNVGSNRIGDAGA 424
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 72/276 (26%), Positives = 123/276 (44%), Gaps = 11/276 (3%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L +++L + + D+G+ L +L+ + I G+ L + +T+L +
Sbjct: 193 ATLTALNLRRNAIGDAGVAAFARNKKLTTLNVSGN-GIGPAGVRALAANTTITTLDIS-D 250
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N I +G +A A L +LD C G L L SL++ + N I ++ L
Sbjct: 251 NEIGDEGARALASNAALTRLDASDCGIGPDGTQALATSTTLTSLDLSY-NEIEAEGVEAL 309
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
T L++L +++ L LT+LNL + A + A +L LNL
Sbjct: 310 GRNTTLRTLHACGNELGHREAELLAASTTLTVLNLSSNAIGNAGARAFGANTTLAELNL- 368
Query: 237 RCQLSDDGCEK---FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
S++G E+ ++ G L L+L N I D L L +LN+ S IGD G
Sbjct: 369 ----SNNGIERVPAWADTGKLTTLDLSNNRIGDAAAQVLAASRTLTTLNVGSNRIGDAGA 424
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 329
L G L L++S ++G +G+ L+ T L+ +
Sbjct: 425 CALAGNTTLATLDVSLNRIGKAGMLALAANTTLKKL 460
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 79/310 (25%), Positives = 123/310 (39%), Gaps = 32/310 (10%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN------------ 116
+T G+ HL L LD + C +D L G + LT+L+ RRN
Sbjct: 158 ITAVGIAHLLALP-LDRLDVSGCGLNADSA-RLLAGHATLTALNLRRNAIGDAGVAAFAR 215
Query: 117 -----------NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC 165
N I G++A A + LD+ G L L L+ C
Sbjct: 216 NKKLTTLNVSGNGIGPAGVRALAANTTITTLDISDNEIGDEGARALASNAALTRLDASDC 275
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS-- 223
D + L+ T L SL +S +++ G+ L + TL L C ++
Sbjct: 276 GIGPDG-TQALATSTTLTSLDLSYNEIEAEGVEALG--RNTTLRTLHACGNELGHREAEL 332
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
L+A +L LNL+ + + G F +L LNL N I E + L +L+L
Sbjct: 333 LAASTTLTVLNLSSNAIGNAGARAFGANTTLAELNLSNNGI--ERVPAWADTGKLTTLDL 390
Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
+ IGD L L L + ++G +G L+G T L ++++S I +
Sbjct: 391 SNNRIGDAAAQVLAASRTLTTLNVGSNRIGDAGACALAGNTTLATLDVSLNRIGKAGMLA 450
Query: 344 LAGLSSLKSL 353
LA ++LK L
Sbjct: 451 LAANTTLKKL 460
Score = 41.2 bits (95), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 53/122 (43%), Gaps = 9/122 (7%)
Query: 278 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL-----RHLSGLTNLESINLS 332
L L+L C EG + G+ +L L L V GL R L+G L ++NL
Sbjct: 146 LRELDLSLC----EGPITAVGIAHLLALPLDRLDVSGCGLNADSARLLAGHATLTALNLR 201
Query: 333 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
I D + A L +LN+ I G+ AL + T +T LD+ I D GA L
Sbjct: 202 RNAIGDAGVAAFARNKKLTTLNVSGNGIGPAGVRALAANTTITTLDISDNEIGDEGARAL 261
Query: 393 RS 394
S
Sbjct: 262 AS 263
>gi|15896519|ref|NP_349868.1| ChW repeat-containing protein [Clostridium acetobutylicum ATCC 824]
gi|337738478|ref|YP_004637925.1| ChW repeat-containing protein [Clostridium acetobutylicum DSM 1731]
gi|384459988|ref|YP_005672408.1| putative surface protein, responsible for cell interaction;
contains cell adhesion domain and ChW-repeats
[Clostridium acetobutylicum EA 2018]
gi|15026350|gb|AAK81208.1|AE007823_2 Possible surface protein, responsible for cell interaction;
contains cell adhesion domain and ChW-repeats
[Clostridium acetobutylicum ATCC 824]
gi|325510677|gb|ADZ22313.1| putative surface protein, responsible for cell interaction;
contains cell adhesion domain and ChW-repeats
[Clostridium acetobutylicum EA 2018]
gi|336291611|gb|AEI32745.1| ChW repeat-containing protein [Clostridium acetobutylicum DSM 1731]
Length = 874
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 77/248 (31%), Positives = 121/248 (48%), Gaps = 21/248 (8%)
Query: 145 HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQ 204
+G + +L + KL +L I N TD D+ P+ LTNL L I SK+++ +
Sbjct: 540 YGNVTDLTPISKLSNLKILSLNGDTDIDISPIGNLTNLNQLDIGESKISNINVLNKLNNL 599
Query: 205 KLTLLNLEGCPVTAACLDSLSALGSLFYLNL---NRCQLSDDGCEKFSKIGSLKVLNLGF 261
+L+ + S LGSL L L + C SD +K+ +L ++L +
Sbjct: 600 NYLILDKN------TSIKDFSPLGSLTNLTLLQASYCNFSD--LTPLAKMKNLSRVSLNY 651
Query: 262 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 321
N IT + LK TNL L L I D + + L NL+ + LS QV + + L+
Sbjct: 652 NNIT--SIEPLKSSTNLVDLVLSGNKISD--ITPVANLTNLESISLSYNQV--NNISSLA 705
Query: 322 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 381
LT L+S+ L TGISD + L+GL++L L + I D + +L +LT L +L +
Sbjct: 706 KLTKLKSLMLDHTGISD--ISSLSGLTNLNYLGVQDNNIED--ITSLKNLTNLANLKISQ 761
Query: 382 ARITDSGA 389
+I++ A
Sbjct: 762 NKISNVDA 769
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 82/281 (29%), Positives = 130/281 (46%), Gaps = 51/281 (18%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
+NL L ++C SD L L + NL+ +S NN + + +K+ L++LV
Sbjct: 620 TNLTLLQASYC-NFSD--LTPLAKMKNLSRVSLNYNNITSIEPLKSSTNLVDLV------ 670
Query: 141 CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL 200
L G N I SD+ P++ LTNL+S+ +S ++V + I+ L
Sbjct: 671 ----------LSG------------NKI--SDITPVANLTNLESISLSYNQVNN--ISSL 704
Query: 201 KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL-NL 259
L KL L L+ + + + SLS L +L YL + + D I SLK L NL
Sbjct: 705 AKLTKLKSLMLDHTGI--SDISSLSGLTNLNYLGVQDNNIED--------ITSLKNLTNL 754
Query: 260 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN-LKCLELSDTQVGSSGLR 318
+I+ + ++ + NL +L L + + + N+ + N K + LS S +
Sbjct: 755 ANLKISQNKISNVDAIGNLTNLTL--LDMNNNQISNINAIKNSTKLISLSMHHNKVSDIS 812
Query: 319 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 359
LS LTNLES+NL I+D + L LS L ++L Q
Sbjct: 813 ALSKLTNLESLNLGNNPIND--VTPLKDLSHLYEVDLTTSQ 851
>gi|351706287|gb|EHB09206.1| F-box/LRR-repeat protein 2 [Heterocephalus glaber]
Length = 412
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 82/248 (33%), Positives = 128/248 (51%), Gaps = 20/248 (8%)
Query: 57 SSLLSVDLSGS-DVTDSGLIHLKD-CSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSF 113
S L +DL+ VT+S L + + C NL+ L+ ++C QI+ G+E L RG L +L
Sbjct: 120 SKLKHLDLTSCVSVTNSSLKCISEGCRNLEYLNLSWCDQITKDGIEALVRGCRCLKALLL 179
Query: 114 RRNNAITAQGMKAFAGLIN-LVKLDLERCTRI-HGGLVNL-KGLMKLESLNIKWCNCITD 170
R + + +K + LV L+L+ C+RI G+V + +G +L++L++ C+ +TD
Sbjct: 180 RGCTQLEDEALKHMQNYCHELVSLNLQSCSRITDEGVVQICRGCRQLQALSLSGCSNLTD 239
Query: 171 SDMKPLSGLTNLKSLQI----SCSKVTDSGIAYL-KGLQKLTLLNLEGCP-VTAACLDSL 224
+ + L GL N +QI C+ +TD+G L + L ++LE C +T + L L
Sbjct: 240 ASLAAL-GL-NCPRMQILEAARCTHLTDAGFTLLARNCHDLEKMDLEECILITDSTLIQL 297
Query: 225 S-ALGSLFYLNLNRCQL-SDDGCEKFSK----IGSLKVLNLGFNEITDECLVHLKGLTNL 278
S L L+L+ C+L +DDG S L+VL L ITD L HL+ L
Sbjct: 298 SIHCPKLQALSLSHCELITDDGILHLSNSTCGHKRLRVLELDNCLITDVALEHLENCRGL 357
Query: 279 ESLNLDSC 286
E L L C
Sbjct: 358 ERLELYDC 365
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 92/351 (26%), Positives = 159/351 (45%), Gaps = 58/351 (16%)
Query: 43 GVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLE 100
GV D + A ++ ++L+G + +TDS L + CS L+ LD C+ +++ L+
Sbjct: 80 GVGDSSLKTFAQNCRNIEHLNLNGCTKITDSTCYSLSRFCSKLKHLDLTSCVSVTNSSLK 139
Query: 101 HL-RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 159
+ G NL L+ + IT G++A ++G L++
Sbjct: 140 CISEGCRNLEYLNLSWCDQITKDGIEAL-----------------------VRGCRCLKA 176
Query: 160 LNIKWCNCITDSDMKPLSGLTN-LKSLQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCP- 215
L ++ C + D +K + + L SL + SCS++TD G+ + +G ++L L+L GC
Sbjct: 177 LLLRGCTQLEDEALKHMQNYCHELVSLNLQSCSRITDEGVVQICRGCRQLQALSLSGCSN 236
Query: 216 VTAACLDSLSALG----SLFYLNLNRC-QLSDDG-------CEKFSKIGSLKVLNLGFNE 263
+T A SL+ALG + L RC L+D G C K+ + +
Sbjct: 237 LTDA---SLAALGLNCPRMQILEAARCTHLTDAGFTLLARNCHDLEKMDLEECI-----L 288
Query: 264 ITDECLVHLK-GLTNLESLNLDSCG-IGDEGLVNLT----GLCNLKCLELSDTQVGSSGL 317
ITD L+ L L++L+L C I D+G+++L+ G L+ LEL + + L
Sbjct: 289 ITDSTLIQLSIHCPKLQALSLSHCELITDDGILHLSNSTCGHKRLRVLELDNCLITDVAL 348
Query: 318 RHLSGLTNLESINL-SFTGISDGSLRKL-AGLSSLKSLNLDARQITDTGLA 366
HL LE + L ++ ++++ A L +K A I T +A
Sbjct: 349 EHLENCRGLERLELYDCQQVTRAGIKRMRAQLPHVKVHAYFAPVIPPTAVA 399
>gi|406832063|ref|ZP_11091657.1| hypothetical protein SpalD1_10502 [Schlesneria paludicola DSM
18645]
Length = 740
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 4/138 (2%)
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
L DD E + S++ +NL + +C+ + GL + SLNL I + + ++
Sbjct: 447 HLRDDDLELLRPLNSVREVNLAHTSVHGDCIEQIAGLPGVLSLNLGGTKISNAAMRDIRM 506
Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
L +++ L L DT V G+ HLS L L + L+ T I+D +L+ LA + SL LNL+
Sbjct: 507 LPDIQELCLYDTAVSDEGVAHLSELKALRRLFLNATPITDAALKSLARMDSLTDLNLEGT 566
Query: 359 QITDTGL----AALTSLT 372
+++ L AA +LT
Sbjct: 567 RVSPAALDELIAARPNLT 584
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 72/133 (54%), Gaps = 1/133 (0%)
Query: 257 LNLGF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 315
++L F N + D+ L L+ L ++ +NL + + + + GL + L L T++ ++
Sbjct: 440 VDLAFSNHLRDDDLELLRPLNSVREVNLAHTSVHGDCIEQIAGLPGVLSLNLGGTKISNA 499
Query: 316 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 375
+R + L +++ + L T +SD + L+ L +L+ L L+A ITD L +L + LT
Sbjct: 500 AMRDIRMLPDIQELCLYDTAVSDEGVAHLSELKALRRLFLNATPITDAALKSLARMDSLT 559
Query: 376 HLDLFGARITDSG 388
L+L G R++ +
Sbjct: 560 DLNLEGTRVSPAA 572
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 82/167 (49%), Gaps = 5/167 (2%)
Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 280
L+ L L S+ +NL + D E+ + + + LNLG +I++ + ++ L +++
Sbjct: 453 LELLRPLNSVREVNLAHTSVHGDCIEQIAGLPGVLSLNLGGTKISNAAMRDIRMLPDIQE 512
Query: 281 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 340
L L + DEG+ +L+ L L+ L L+ T + + L+ L+ + +L +NL T +S +
Sbjct: 513 LCLYDTAVSDEGVAHLSELKALRRLFLNATPITDAALKSLARMDSLTDLNLEGTRVSPAA 572
Query: 341 LRKL----AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 383
L +L L+ + + R + L S+ T +DL G +
Sbjct: 573 LDELIAARPNLTITSPIPVVNRDTVPSPLVGKISMN-WTAVDLAGQK 618
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 100/207 (48%), Gaps = 17/207 (8%)
Query: 21 TEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSV-DLSGSDVTDSGLIHLKD 79
TE S A A + G +PG DV+ +L+ + +L GS D G +
Sbjct: 388 TERSGPALEPAARK---AGAFPGDEP---DVV----QALIKIKNLRGSVRRDFGKVD--- 434
Query: 80 CSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE 139
+ + S+D F + D LE LR L+++ ++ + ++ ++ AGL ++ L+L
Sbjct: 435 -APILSVDLAFSNHLRDDDLELLRPLNSVREVNLA-HTSVHGDCIEQIAGLPGVLSLNLG 492
Query: 140 RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAY 199
+ + +++ L ++ L + + ++D + LS L L+ L ++ + +TD+ +
Sbjct: 493 GTKISNAAMRDIRMLPDIQELCL-YDTAVSDEGVAHLSELKALRRLFLNATPITDAALKS 551
Query: 200 LKGLQKLTLLNLEGCPVTAACLDSLSA 226
L + LT LNLEG V+ A LD L A
Sbjct: 552 LARMDSLTDLNLEGTRVSPAALDELIA 578
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 67/138 (48%)
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
S+++ + N + D D++ L L +++ + ++ + V I + GL + LNL G ++
Sbjct: 439 SVDLAFSNHLRDDDLELLRPLNSVREVNLAHTSVHGDCIEQIAGLPGVLSLNLGGTKISN 498
Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 278
A + + L + L L +SD+G S++ +L+ L L ITD L L + +L
Sbjct: 499 AAMRDIRMLPDIQELCLYDTAVSDEGVAHLSELKALRRLFLNATPITDAALKSLARMDSL 558
Query: 279 ESLNLDSCGIGDEGLVNL 296
LNL+ + L L
Sbjct: 559 TDLNLEGTRVSPAALDEL 576
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 58/127 (45%)
Query: 194 DSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS 253
D + L+ L + +NL V C++ ++ L + LNL ++S+ +
Sbjct: 450 DDDLELLRPLNSVREVNLAHTSVHGDCIEQIAGLPGVLSLNLGGTKISNAAMRDIRMLPD 509
Query: 254 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 313
++ L L ++DE + HL L L L L++ I D L +L + +L L L T+V
Sbjct: 510 IQELCLYDTAVSDEGVAHLSELKALRRLFLNATPITDAALKSLARMDSLTDLNLEGTRVS 569
Query: 314 SSGLRHL 320
+ L L
Sbjct: 570 PAALDEL 576
Score = 39.7 bits (91), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 39/73 (53%)
Query: 320 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
L L ++ +NL+ T + + ++AGL + SLNL +I++ + + L + L L
Sbjct: 456 LRPLNSVREVNLAHTSVHGDCIEQIAGLPGVLSLNLGGTKISNAAMRDIRMLPDIQELCL 515
Query: 380 FGARITDSGAAYL 392
+ ++D G A+L
Sbjct: 516 YDTAVSDEGVAHL 528
>gi|302768605|ref|XP_002967722.1| hypothetical protein SELMODRAFT_88742 [Selaginella moellendorffii]
gi|300164460|gb|EFJ31069.1| hypothetical protein SELMODRAFT_88742 [Selaginella moellendorffii]
Length = 645
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 101/401 (25%), Positives = 178/401 (44%), Gaps = 45/401 (11%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
L+ L L + D + ++A++ L+ +DLS ++VTD G+ ++ + L++L+ C
Sbjct: 181 LKTLVLKGCVAITDAGIKLVAARSEELMILDLSFTEVTDEGVKYVSELKALRTLNLMACN 240
Query: 93 QISDGGLEHLR-GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVN 150
+ D L +L+ +L L R +++ G+ A L L+ L L C+++ ++
Sbjct: 241 NVGDRALSYLQENCKSLVDLDVSRCQNVSSVGI---AALPTLLTLHLCHCSQVTEDAFLD 297
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK-VTDSGIAYL----KGLQK 205
+ +++L + C DS + +G LK L + S+ VTD I L K L+K
Sbjct: 298 FEKPNGIQTLRLDGCEFTHDSLDRVAAGCQELKELSLCKSRGVTDKRIDRLITSCKSLKK 357
Query: 206 LTL--------LNLEGCPVTAACLDSLSALGSLFY-----------------LNLNRCQL 240
L L ++L ++ + SL SL L++ C L
Sbjct: 358 LDLTCCFDVTEISLLSIARSSTSIKSLKLESSLMVSDNSLPMVFESCHLLEELDVTDCNL 417
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHL-KGLTNLESLNLDSC-GIGDEGLVNLTG 298
+ G E L+VL L F I+D + + G L L+L C +GD G++++
Sbjct: 418 TGAGLEPIGNCVLLRVLKLAFCNISDYGIFFVGAGCHKLMELDLYRCRSVGDAGVISVVN 477
Query: 299 LC-NLKCLELSD----TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
C +L+ L LS + + + LS L+ LE + SDG + AG L L
Sbjct: 478 GCQDLRVLNLSYCSRISDASMTAIARLSKLSQLEIRGCTLV-TSDGLTQVAAGCKRLVEL 536
Query: 354 NLD-ARQITDTGLAALTSL-TGLTHLDLFGARITDSGAAYL 392
++ +I D GL AL L L +++ +T++G L
Sbjct: 537 DIKRCTRIGDPGLLALEHLCPDLRQINVSYCPLTNNGMMAL 577
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 107/413 (25%), Positives = 174/413 (42%), Gaps = 64/413 (15%)
Query: 38 LGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISD 96
L + G + ++ SL+ +DLS S V D GL+ L + ++ L CI+++D
Sbjct: 109 LNRICGFTSTGLRYLSQHCLSLVEMDLSYCSYVEDDGLLGLARLNRIEKLKLTGCIRVTD 168
Query: 97 GGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFAGLI-NLVKLDLERCTRIHGGLVNLKGL 154
GLE L G L +L + AIT G+K A L+ LDL G+ + L
Sbjct: 169 MGLESLAAGCHRLKTLVLKGCVAITDAGIKLVAARSEELMILDLSFTEVTDEGVKYVSEL 228
Query: 155 MKLESLNIKWCNCITDSDMKPL-SGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTL---- 208
L +LN+ CN + D + L +L L +S C V+ GIA L L L L
Sbjct: 229 KALRTLNLMACNNVGDRALSYLQENCKSLVDLDVSRCQNVSSVGIAALPTLLTLHLCHCS 288
Query: 209 ------------------LNLEGCPVTAACLDSLSALGSLFYLNLNRCQ---LSDDGCEK 247
L L+GC T LD ++A G L+ C+ ++D ++
Sbjct: 289 QVTEDAFLDFEKPNGIQTLRLDGCEFTHDSLDRVAA-GCQELKELSLCKSRGVTDKRIDR 347
Query: 248 -FSKIGSLKVLNLG--FNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCN-L 302
+ SLK L+L F+ L + T+++SL L+S + D L + C+ L
Sbjct: 348 LITSCKSLKKLDLTCCFDVTEISLLSIARSSTSIKSLKLESSLMVSDNSLPMVFESCHLL 407
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD------------------------ 338
+ L+++D + +GL + L + L+F ISD
Sbjct: 408 EELDVTDCNLTGAGLEPIGNCVLLRVLKLAFCNISDYGIFFVGAGCHKLMELDLYRCRSV 467
Query: 339 ---GSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGARITDS 387
G + + G L+ LNL +I+D + A+ L+ L+ L++ G + S
Sbjct: 468 GDAGVISVVNGCQDLRVLNLSYCSRISDASMTAIARLSKLSQLEIRGCTLVTS 520
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 68/277 (24%), Positives = 129/277 (46%), Gaps = 43/277 (15%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGS-DVTDSGLIHL-KDCSNLQSLDFNF 90
L++L L + GV DK +D + + SL +DL+ DVT+ L+ + + ++++SL
Sbjct: 329 LKELSLCKSRGVTDKRIDRLITSCKSLKKLDLTCCFDVTEISLLSIARSSTSIKSLKLES 388
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF----------------------- 127
+ +SD L + +L + +T G++
Sbjct: 389 SLMVSDNSLPMVFESCHLLEELDVTDCNLTGAGLEPIGNCVLLRVLKLAFCNISDYGIFF 448
Query: 128 --AGLINLVKLDLERCTRI--HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
AG L++LDL RC + G + + G L LN+ +C+ I+D+ M ++ L+ L
Sbjct: 449 VGAGCHKLMELDLYRCRSVGDAGVISVVNGCQDLRVLNLSYCSRISDASMTAIARLSKLS 508
Query: 184 SLQIS-CSKVTDSGIAYLK-GLQKLTLLNLEGCP-VTAACLDSLSAL-GSLFYLNLNRCQ 239
L+I C+ VT G+ + G ++L L+++ C + L +L L L +N++ C
Sbjct: 509 QLEIRGCTLVTSDGLTQVAAGCKRLVELDIKRCTRIGDPGLLALEHLCPDLRQINVSYCP 568
Query: 240 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 276
L+++G +K+G ++ + LVHLK ++
Sbjct: 569 LTNNGMMALAKLGCMQNMK----------LVHLKNVS 595
>gi|348575331|ref|XP_003473443.1| PREDICTED: F-box/LRR-repeat protein 2-like [Cavia porcellus]
Length = 436
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 87/297 (29%), Positives = 148/297 (49%), Gaps = 41/297 (13%)
Query: 57 SSLLSVDLSGS-DVTDSGLIHLKD-CSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSF 113
S L +DL+ +T+S L + + C NL+ L+ ++C QI+ G+E L RG L +L
Sbjct: 144 SKLKHLDLTSCVSITNSSLKCISEGCRNLEYLNLSWCDQITREGIEALVRGCRCLKALLL 203
Query: 114 RRNNAITAQGMKAFAGLIN-LVKLDLERCTRI-HGGLVNL-KGLMKLESLNIKWCNCITD 170
R + + +K + LV L+L+ C+RI G+V + +G +L++L++ C+ +TD
Sbjct: 204 RGCTQLEDEALKHIQNYCHELVSLNLQSCSRITDEGVVEICRGCRQLQALSLSGCSSLTD 263
Query: 171 SDMKPLSGLTNLKSLQI----SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLS 225
+ + L GL N +QI C+ +TD+G L + L ++LE C + DS
Sbjct: 264 ASLAAL-GL-NCPRMQILEAARCTHLTDAGFTLLARNCHDLEKMDLEECILIT---DS-- 316
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE-ITDECLVHLK----GLTNLES 280
+L L+++ C K L+ L+L E ITD+ ++HL G L+
Sbjct: 317 ---TLIQLSIH--------CPK------LQALSLSHCELITDDGILHLSNSTCGHKRLKV 359
Query: 281 LNLDSCGIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSFTGI 336
L LD+C I D L +L +L+ LEL D QV +G++ + ++ F +
Sbjct: 360 LELDNCLISDVALEHLENCRSLERLELYDCQQVTRAGIKRMRAQLPHVKVHAYFAPV 416
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 94/351 (26%), Positives = 161/351 (45%), Gaps = 58/351 (16%)
Query: 43 GVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLE 100
GV D + A ++ ++L+G + +TDS L + CS L+ LD C+ I++ L+
Sbjct: 104 GVGDSSLKTFAQNCRNIEHLNLNGCTKITDSTCYSLSRFCSKLKHLDLTSCVSITNSSLK 163
Query: 101 HL-RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 159
+ G NL L+ + IT +G++A ++G L++
Sbjct: 164 CISEGCRNLEYLNLSWCDQITREGIEAL-----------------------VRGCRCLKA 200
Query: 160 LNIKWCNCITDSDMKPLSGLTN-LKSLQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCP- 215
L ++ C + D +K + + L SL + SCS++TD G+ + +G ++L L+L GC
Sbjct: 201 LLLRGCTQLEDEALKHIQNYCHELVSLNLQSCSRITDEGVVEICRGCRQLQALSLSGCSS 260
Query: 216 VTAACLDSLSALG----SLFYLNLNRC-QLSDDG-------CEKFSKIGSLKVLNLGFNE 263
+T A SL+ALG + L RC L+D G C K+ + +
Sbjct: 261 LTDA---SLAALGLNCPRMQILEAARCTHLTDAGFTLLARNCHDLEKMDLEECI-----L 312
Query: 264 ITDECLVHLK-GLTNLESLNLDSCG-IGDEGLVNLT----GLCNLKCLELSDTQVGSSGL 317
ITD L+ L L++L+L C I D+G+++L+ G LK LEL + + L
Sbjct: 313 ITDSTLIQLSIHCPKLQALSLSHCELITDDGILHLSNSTCGHKRLKVLELDNCLISDVAL 372
Query: 318 RHLSGLTNLESINL-SFTGISDGSLRKL-AGLSSLKSLNLDARQITDTGLA 366
HL +LE + L ++ ++++ A L +K A I T +A
Sbjct: 373 EHLENCRSLERLELYDCQQVTRAGIKRMRAQLPHVKVHAYFAPVIPPTAVA 423
>gi|290975616|ref|XP_002670538.1| predicted protein [Naegleria gruberi]
gi|284084098|gb|EFC37794.1| predicted protein [Naegleria gruberi]
Length = 333
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 86/313 (27%), Positives = 153/313 (48%), Gaps = 17/313 (5%)
Query: 92 IQISDGGLEHL----RGLSNLTSLSFRRNNAITAQGMKAFAGLIN-LVKLDLERCTRIHG 146
+++SD G E L + + LT LS N+ I +G+K L N L L++E +
Sbjct: 15 LELSDIGNEQLIQISQSMKQLTKLSVGFND-IGGEGLKLIKELSNSLTILNIEHNQIGNE 73
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
GL L GL +L+SL+I N I + L L L +S + V + G+ ++ L+ L
Sbjct: 74 GLELLSGLTRLDSLDIS-TNKI--DKFNSICNLNQLTILNVSNNIVGNEGVKFISKLKHL 130
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG----CEKFSKIGSLKVLNLGFN 262
T L ++ C V + S+ L +L N++ + ++G C F LK L N
Sbjct: 131 TELVMQSCNVKEEGMKSICELKNLTNFNISNNFIRNEGMILICNSFP---LLKCLRASSN 187
Query: 263 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 322
+I++E + + L L LN+ I + G+ +++GL L CL++S + G +S
Sbjct: 188 KISNEGVQDITKLERLTDLNICRNEISNNGMKSISGLKKLTCLDVSGNNISDEGATSISQ 247
Query: 323 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT-SLTGLTHLDLFG 381
L+ L S+ ++ I D + ++ +++L L ++ QI + G A++ ++ LT L +
Sbjct: 248 LSQLSSLYINDNQIGDEGMESISEMNNLSKLWINDNQIGNIGAKAISVNMHQLTFLFIAN 307
Query: 382 ARITDSGAAYLRS 394
RI + G L +
Sbjct: 308 NRIGEEGIKLLEN 320
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 73/277 (26%), Positives = 136/277 (49%), Gaps = 17/277 (6%)
Query: 52 IASQGSSLLSVDLSGSDVTDSGLIHLKDCSN---LQSLDFNFCIQISDGGLEHLRGLSNL 108
I+ L + + +D+ GL +K+ SN + +++ N QI + GLE L GL+ L
Sbjct: 28 ISQSMKQLTKLSVGFNDIGGEGLKLIKELSNSLTILNIEHN---QIGNEGLELLSGLTRL 84
Query: 109 TSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN---IKWC 165
SL I+ + F + NL +L + + G +K + KL+ L ++ C
Sbjct: 85 DSLD------ISTNKIDKFNSICNLNQLTILNVSNNIVGNEGVKFISKLKHLTELVMQSC 138
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSL 224
N + + MK + L NL + IS + + + G+ + L L ++ + +
Sbjct: 139 N-VKEEGMKSICELKNLTNFNISNNFIRNEGMILICNSFPLLKCLRASSNKISNEGVQDI 197
Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284
+ L L LN+ R ++S++G + S + L L++ N I+DE + L+ L SL ++
Sbjct: 198 TKLERLTDLNICRNEISNNGMKSISGLKKLTCLDVSGNNISDEGATSISQLSQLSSLYIN 257
Query: 285 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 321
IGDEG+ +++ + NL L ++D Q+G+ G + +S
Sbjct: 258 DNQIGDEGMESISEMNNLSKLWINDNQIGNIGAKAIS 294
>gi|290995979|ref|XP_002680560.1| predicted protein [Naegleria gruberi]
gi|284094181|gb|EFC47816.1| predicted protein [Naegleria gruberi]
Length = 263
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 72/131 (54%)
Query: 249 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 308
S++ L LN+ N+I E + ++ + L SLN+ IGD+G ++ + L L +
Sbjct: 127 SEMKQLTSLNITNNQICVEGVKYISEMKQLLSLNISENEIGDKGAKYISEMKQLTSLNIY 186
Query: 309 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 368
D ++ + G+++LS + L S+N+ ISD + ++ + L SLN+ +I D G+ +
Sbjct: 187 DNEISNEGVKYLSEMKQLTSLNIGVNRISDEEAKYISEMKQLISLNIGYNEIGDKGVKYI 246
Query: 369 TSLTGLTHLDL 379
+ + LT LD+
Sbjct: 247 SEMKQLTSLDI 257
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 78/149 (52%), Gaps = 2/149 (1%)
Query: 163 KW--CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 220
+W + + + K +S + L SL I+ +++ G+ Y+ +++L LN+ +
Sbjct: 111 RWLLASLVKTNQTKFISEMKQLTSLNITNNQICVEGVKYISEMKQLLSLNISENEIGDKG 170
Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 280
+S + L LN+ ++S++G + S++ L LN+G N I+DE ++ + L S
Sbjct: 171 AKYISEMKQLTSLNIYDNEISNEGVKYLSEMKQLTSLNIGVNRISDEEAKYISEMKQLIS 230
Query: 281 LNLDSCGIGDEGLVNLTGLCNLKCLELSD 309
LN+ IGD+G+ ++ + L L++ D
Sbjct: 231 LNIGYNEIGDKGVKYISEMKQLTSLDIGD 259
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 74/143 (51%)
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 248
S V + ++ +++LT LN+ + + +S + L LN++ ++ D G +
Sbjct: 115 ASLVKTNQTKFISEMKQLTSLNITNNQICVEGVKYISEMKQLLSLNISENEIGDKGAKYI 174
Query: 249 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 308
S++ L LN+ NEI++E + +L + L SLN+ I DE ++ + L L +
Sbjct: 175 SEMKQLTSLNIYDNEISNEGVKYLSEMKQLTSLNIGVNRISDEEAKYISEMKQLISLNIG 234
Query: 309 DTQVGSSGLRHLSGLTNLESINL 331
++G G++++S + L S+++
Sbjct: 235 YNEIGDKGVKYISEMKQLTSLDI 257
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 62/118 (52%)
Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 334
+ L SLN+ + I EG+ ++ + L L +S+ ++G G +++S + L S+N+
Sbjct: 129 MKQLTSLNITNNQICVEGVKYISEMKQLLSLNISENEIGDKGAKYISEMKQLTSLNIYDN 188
Query: 335 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
IS+ ++ L+ + L SLN+ +I+D ++ + L L++ I D G Y+
Sbjct: 189 EISNEGVKYLSEMKQLTSLNIGVNRISDEEAKYISEMKQLISLNIGYNEIGDKGVKYI 246
Score = 45.4 bits (106), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 64/123 (52%), Gaps = 2/123 (1%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
QI G++++ + L SL+ N I +G K + + L L++ + G+ L
Sbjct: 141 QICVEGVKYISEMKQLLSLNISEN-EIGDKGAKYISEMKQLTSLNIYDNEISNEGVKYLS 199
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
+ +L SLNI N I+D + K +S + L SL I +++ D G+ Y+ +++LT L++
Sbjct: 200 EMKQLTSLNIG-VNRISDEEAKYISEMKQLISLNIGYNEIGDKGVKYISEMKQLTSLDIG 258
Query: 213 GCP 215
P
Sbjct: 259 DNP 261
Score = 45.4 bits (106), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 61/116 (52%), Gaps = 1/116 (0%)
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
G+ + + +L SLNI N I D K +S + L SL I +++++ G+ YL +++L
Sbjct: 146 GVKYISEMKQLLSLNIS-ENEIGDKGAKYISEMKQLTSLNIYDNEISNEGVKYLSEMKQL 204
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 262
T LN+ ++ +S + L LN+ ++ D G + S++ L L++G N
Sbjct: 205 TSLNIGVNRISDEEAKYISEMKQLISLNIGYNEIGDKGVKYISEMKQLTSLDIGDN 260
Score = 41.2 bits (95), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 43/81 (53%)
Query: 312 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 371
V ++ + +S + L S+N++ I ++ ++ + L SLN+ +I D G ++ +
Sbjct: 118 VKTNQTKFISEMKQLTSLNITNNQICVEGVKYISEMKQLLSLNISENEIGDKGAKYISEM 177
Query: 372 TGLTHLDLFGARITDSGAAYL 392
LT L+++ I++ G YL
Sbjct: 178 KQLTSLNIYDNEISNEGVKYL 198
>gi|449278816|gb|EMC86555.1| F-box/LRR-repeat protein 13, partial [Columba livia]
Length = 546
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 108/424 (25%), Positives = 184/424 (43%), Gaps = 88/424 (20%)
Query: 24 SLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDV------------- 69
S ++ +C LQ+L L + G+ND+ M VI+ +LL ++LS +D+
Sbjct: 76 SFKSIGECRNLQELNLSECQGLNDESMRVISEGCRALLYLNLSYTDITNGTLRLLSSSFH 135
Query: 70 -------------TDSGLIHL---KDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLS 112
TD GL++L K C L LD + CIQIS G ++ G S + L
Sbjct: 136 NLQYLSLAHCRKFTDKGLLYLGSGKGCHKLIYLDLSGCIQISVDGFRNIANGCSRIQDLL 195
Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERCTRI---------HGGLVNLKGLM--KLESLN 161
+ A+T ++A +E+C +I H K L KL +
Sbjct: 196 INKMPALTDGCIQAL----------VEKCRQITSVVFLDSPHLSDTTFKALAKCKLVKVG 245
Query: 162 IKWCNCITDSDMKPLSG-LTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
I+ N ITD K +S ++ + ++ C ++TD+G++ + L+ + +LN+ C
Sbjct: 246 IEGNNQITDLSFKLMSKCCPYIRHIHVADCHQITDTGLSMISPLKHILVLNVADCI---- 301
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKF---SKIGSLKVLNL-GFNEITDECLVHL-KG 274
++SD+G F S L+ LNL +TD + + +
Sbjct: 302 -------------------RISDEGVRPFVQGSSGAKLRELNLTNCIRVTDASVTEIAQR 342
Query: 275 LTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS- 332
L LNL C + D G+ L + +L L++S T + GLR L ++ ++LS
Sbjct: 343 CHELTYLNLRYCENVTDAGIEALGNISSLISLDVSGTSISDMGLRALGRQGKIKELSLSE 402
Query: 333 FTGISDGSLRKL-AGLSSLKSLNLDA-RQITDTGLAALT-SLTGLTHLDLFG-ARITDSG 388
ISD +++ G L+ + + Q+TD + A+ LT + + G ++TDS
Sbjct: 403 CKNISDTGIQEFCKGTKHLEGCRVSSCPQLTDEAVRAMAFHCRRLTAVSIAGCPKMTDSC 462
Query: 389 AAYL 392
YL
Sbjct: 463 IQYL 466
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/242 (23%), Positives = 111/242 (45%), Gaps = 40/242 (16%)
Query: 12 NELVY---SRCLTEVSLEAFRDCA-----LQDLCLGQYPGVNDKWMDVIASQGSSLLSVD 63
++L+Y S C+ ++S++ FR+ A +QDL + + P + D + + + + SV
Sbjct: 163 HKLIYLDLSGCI-QISVDGFRNIANGCSRIQDLLINKMPALTDGCIQALVEKCRQITSVV 221
Query: 64 -LSGSDVTDSGLIHLKDCS--------NLQSLDFNF-----------------CIQISDG 97
L ++D+ L C N Q D +F C QI+D
Sbjct: 222 FLDSPHLSDTTFKALAKCKLVKVGIEGNNQITDLSFKLMSKCCPYIRHIHVADCHQITDT 281
Query: 98 GLEHLRGLSNLTSLSFRRNNAITAQGMKAF---AGLINLVKLDLERCTRIHGGLVN--LK 152
GL + L ++ L+ I+ +G++ F + L +L+L C R+ V +
Sbjct: 282 GLSMISPLKHILVLNVADCIRISDEGVRPFVQGSSGAKLRELNLTNCIRVTDASVTEIAQ 341
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
+L LN+++C +TD+ ++ L +++L SL +S + ++D G+ L K+ L+L
Sbjct: 342 RCHELTYLNLRYCENVTDAGIEALGNISSLISLDVSGTSISDMGLRALGRQGKIKELSLS 401
Query: 213 GC 214
C
Sbjct: 402 EC 403
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 84/325 (25%), Positives = 145/325 (44%), Gaps = 50/325 (15%)
Query: 111 LSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCI 168
L+ R ++ K+ NL +L+L C ++ + + +G L LN+ + + I
Sbjct: 64 LNLRGCYSLRWPSFKSIGECRNLQELNLSECQGLNDESMRVISEGCRALLYLNLSYTD-I 122
Query: 169 TDSDMKPLSG-LTNLKSLQIS-CSKVTDSGIAYL---KGLQKLTLLNLEGC--------- 214
T+ ++ LS NL+ L ++ C K TD G+ YL KG KL L+L GC
Sbjct: 123 TNGTLRLLSSSFHNLQYLSLAHCRKFTDKGLLYLGSGKGCHKLIYLDLSGCIQISVDGFR 182
Query: 215 ------------------PVTAACLDSL----SALGSLFYLNLNRCQLSDDGCEKFSKIG 252
+T C+ +L + S+ +L+ LSD + +K
Sbjct: 183 NIANGCSRIQDLLINKMPALTDGCIQALVEKCRQITSVVFLDSP--HLSDTTFKALAKCK 240
Query: 253 SLKVLNLGFNEITDECLVHL-KGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSD- 309
+KV G N+ITD + K + +++ C I D GL ++ L ++ L ++D
Sbjct: 241 LVKVGIEGNNQITDLSFKLMSKCCPYIRHIHVADCHQITDTGLSMISPLKHILVLNVADC 300
Query: 310 TQVGSSGLRHL---SGLTNLESINLS-FTGISDGSLRKLAG-LSSLKSLNLD-ARQITDT 363
++ G+R S L +NL+ ++D S+ ++A L LNL +TD
Sbjct: 301 IRISDEGVRPFVQGSSGAKLRELNLTNCIRVTDASVTEIAQRCHELTYLNLRYCENVTDA 360
Query: 364 GLAALTSLTGLTHLDLFGARITDSG 388
G+ AL +++ L LD+ G I+D G
Sbjct: 361 GIEALGNISSLISLDVSGTSISDMG 385
Score = 39.3 bits (90), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 75/162 (46%), Gaps = 27/162 (16%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRR 115
SSL+S+D+SG+ ++D GL L ++ L + C ISD G++ +G +L
Sbjct: 369 SSLISLDVSGTSISDMGLRALGRQGKIKELSLSECKNISDTGIQEFCKGTKHLEGCRVSS 428
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
+T + ++A A C R L +++I C +TDS ++
Sbjct: 429 CPQLTDEAVRAMAF----------HCRR-------------LTAVSIAGCPKMTDSCIQY 465
Query: 176 LSGLTN-LKSLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGC 214
L+ + L L +S C +TD + L KG ++L +L + C
Sbjct: 466 LAAACHYLHFLDVSGCIHLTDKALKCLWKGCKQLQILKMLYC 507
>gi|270003031|gb|EEZ99478.1| hypothetical protein TcasGA2_TC000052 [Tribolium castaneum]
Length = 389
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 105/216 (48%), Gaps = 9/216 (4%)
Query: 9 QIFNELVYSRC--LTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG 66
Q EL + C +TE L A + + L L V D+ + +A +L L
Sbjct: 128 QALYELELAGCNEITEAGLWACLNPRIVSLTLSDCINVADEAVGAVAQLLPALYEFSLQA 187
Query: 67 SDVTDSGLIHL--KDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQG 123
VTD+ L + K ++L L + C +I++ G+ ++ L NLT LS + IT G
Sbjct: 188 YHVTDAALGYFSPKQSNSLNILRLHSCWEITNHGVVNIVHSLPNLTVLSLSGCSKITDDG 247
Query: 124 MKAFA-GLINLVKLDLERCTRIHGGLVNLKG--LMKLESLNIKWCNCITDSDMKPLSGLT 180
++ A L L LDL C RI + L +LE L + C ITD + +S +
Sbjct: 248 VELIAENLQKLRSLDLSWCPRITDAALEYIACDLNQLEELTLDRCVHITDIGIGYISTML 307
Query: 181 NLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP 215
+L +L + CS++ D G+ +L G++ L +L+L GCP
Sbjct: 308 SLSALYLRWCSQIRDFGLQHLCGMRNLQILSLAGCP 343
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 71/236 (30%), Positives = 121/236 (51%), Gaps = 24/236 (10%)
Query: 175 PLSGLTNLKSLQISCSKVTDSGI-AYLKGLQKLTLLNLEGC-PVTA----ACLDSLSALG 228
PL+ ++ +L + CS +TD G+ + L LQ L L L GC +T ACL+
Sbjct: 99 PLAS-KHIHTLSLRCSSITDRGLESLLDHLQALYELELAGCNEITEAGLWACLNP----- 152
Query: 229 SLFYLNLNRC-QLSDDGCEKFSK-IGSLKVLNLGFNEITDECLVHL--KGLTNLESLNLD 284
+ L L+ C ++D+ ++ + +L +L +TD L + K +L L L
Sbjct: 153 RIVSLTLSDCINVADEAVGAVAQLLPALYEFSLQAYHVTDAALGYFSPKQSNSLNILRLH 212
Query: 285 SCG-IGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLS-GLTNLESINLSF-TGISDG 339
SC I + G+VN+ L NL L LS +++ G+ ++ L L S++LS+ I+D
Sbjct: 213 SCWEITNHGVVNIVHSLPNLTVLSLSGCSKITDDGVELIAENLQKLRSLDLSWCPRITDA 272
Query: 340 SLRKLA-GLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYL 392
+L +A L+ L+ L LD ITD G+ ++++ L+ L L + ++I D G +L
Sbjct: 273 ALEYIACDLNQLEELTLDRCVHITDIGIGYISTMLSLSALYLRWCSQIRDFGLQHL 328
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 115/231 (49%), Gaps = 14/231 (6%)
Query: 115 RNNAITAQGMKAFA-GLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSD 172
R ++IT +G+++ L L +L+L C I GL ++ SL + C + D
Sbjct: 111 RCSSITDRGLESLLDHLQALYELELAGCNEITEAGLWACLN-PRIVSLTLSDCINVADEA 169
Query: 173 MKPLSGL-TNLKSLQISCSKVTDSGIAYLKGLQK--LTLLNLEGCP--VTAACLDSLSAL 227
+ ++ L L + VTD+ + Y Q L +L L C ++ + +L
Sbjct: 170 VGAVAQLLPALYEFSLQAYHVTDAALGYFSPKQSNSLNILRLHSCWEITNHGVVNIVHSL 229
Query: 228 GSLFYLNLNRC-QLSDDGCEKFSK-IGSLKVLNLGF-NEITDECLVHLK-GLTNLESLNL 283
+L L+L+ C +++DDG E ++ + L+ L+L + ITD L ++ L LE L L
Sbjct: 230 PNLTVLSLSGCSKITDDGVELIAENLQKLRSLDLSWCPRITDAALEYIACDLNQLEELTL 289
Query: 284 DSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLS 332
D C I D G+ ++ + +L L L +Q+ GL+HL G+ NL+ ++L+
Sbjct: 290 DRCVHITDIGIGYISTMLSLSALYLRWCSQIRDFGLQHLCGMRNLQILSLA 340
>gi|290979200|ref|XP_002672322.1| predicted protein [Naegleria gruberi]
gi|284085898|gb|EFC39578.1| predicted protein [Naegleria gruberi]
Length = 318
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 78/154 (50%), Gaps = 1/154 (0%)
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
LNL+ +++ G +F + +L+ L+L N I E +L L NL SL L+ I EG
Sbjct: 4 LNLSNSEITSSGISQFGILKNLQELDLSSNLINSEGANYLSSLYNLTSLALNDNSITGEG 63
Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
L N + L NL L L + +GS G +LS TN++ + LS I+D L L SL
Sbjct: 64 LRNFSNLTNLTELFLDNNNIGSVGANYLSSNTNIKFLTLSNNSIADEGLENFGNLKSLIH 123
Query: 353 LNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
LNL+ + GL L+ L LD+ +TD
Sbjct: 124 LNLNFNNV-QRGLIYLSECKLLKQLDIQHNNLTD 156
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 122/241 (50%), Gaps = 16/241 (6%)
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
S++LS S++T SG+ NLQ LD + + I+ G +L L NLTSL+ +N+IT
Sbjct: 3 SLNLSNSEITSSGISQFGILKNLQELDLSSNL-INSEGANYLSSLYNLTSLALN-DNSIT 60
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC----NCITDSDMKPL 176
+G++ F+ L NL +L L+ G L + NIK+ N I D ++
Sbjct: 61 GEGLRNFSNLTNLTELFLDNNNIGSVGANYLSS-----NTNIKFLTLSNNSIADEGLENF 115
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT-AACLDSLSALGSLFYLNL 235
L +L L ++ + V G+ YL + L L+++ +T +D S+ L+L
Sbjct: 116 GNLKSLIHLNLNFNNV-QRGLIYLSECKLLKQLDIQHNNLTDQELIDFFDKELSIEELDL 174
Query: 236 NRCQ-LSDDGCEKFSKIGSLKVLNLGFN-EITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+ + LS + K L +LN+G N ++ D L HL L NL +L ++CGI D+GL
Sbjct: 175 SENKKLSGKSFKNICKQRKLSILNIGSNPKLGDLSLSHLASL-NLLTLRANNCGITDKGL 233
Query: 294 V 294
V
Sbjct: 234 V 234
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 62/126 (49%)
Query: 254 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 313
++ LNL +EIT + L NL+ L+L S I EG L+ L NL L L+D +
Sbjct: 1 MESLNLSNSEITSSGISQFGILKNLQELDLSSNLINSEGANYLSSLYNLTSLALNDNSIT 60
Query: 314 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 373
GLR+ S LTNL + L I L+ +++K L L I D GL +L
Sbjct: 61 GEGLRNFSNLTNLTELFLDNNNIGSVGANYLSSNTNIKFLTLSNNSIADEGLENFGNLKS 120
Query: 374 LTHLDL 379
L HL+L
Sbjct: 121 LIHLNL 126
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 77/157 (49%), Gaps = 1/157 (0%)
Query: 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 268
LNL +T++ + L +L L+L+ ++ +G S + +L L L N IT E
Sbjct: 4 LNLSNSEITSSGISQFGILKNLQELDLSSNLINSEGANYLSSLYNLTSLALNDNSITGEG 63
Query: 269 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 328
L + LTNL L LD+ IG G L+ N+K L LS+ + GL + L +L
Sbjct: 64 LRNFSNLTNLTELFLDNNNIGSVGANYLSSNTNIKFLTLSNNSIADEGLENFGNLKSLIH 123
Query: 329 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 365
+NL+F + G L L+ LK L++ +TD L
Sbjct: 124 LNLNFNNVQRG-LIYLSECKLLKQLDIQHNNLTDQEL 159
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 55/111 (49%)
Query: 278 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 337
+ESLNL + I G+ L NL+ L+LS + S G +LS L NL S+ L+ I+
Sbjct: 1 MESLNLSNSEITSSGISQFGILKNLQELDLSSNLINSEGANYLSSLYNLTSLALNDNSIT 60
Query: 338 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 388
LR + L++L L LD I G L+S T + L L I D G
Sbjct: 61 GEGLRNFSNLTNLTELFLDNNNIGSVGANYLSSNTNIKFLTLSNNSIADEG 111
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 50/93 (53%)
Query: 302 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 361
++ L LS++++ SSG+ L NL+ ++LS I+ L+ L +L SL L+ IT
Sbjct: 1 MESLNLSNSEITSSGISQFGILKNLQELDLSSNLINSEGANYLSSLYNLTSLALNDNSIT 60
Query: 362 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRS 394
GL ++LT LT L L I GA YL S
Sbjct: 61 GEGLRNFSNLTNLTELFLDNNNIGSVGANYLSS 93
>gi|430744264|ref|YP_007203393.1| hypothetical protein Sinac_3437 [Singulisphaera acidiphila DSM
18658]
gi|430015984|gb|AGA27698.1| hypothetical protein Sinac_3437 [Singulisphaera acidiphila DSM
18658]
Length = 329
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 66/123 (53%)
Query: 257 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 316
++L +++D LV L+ L L L+L + D GL +L GL LK L L DT+V +G
Sbjct: 71 VSLAITKVSDSDLVVLEKLGKLTRLSLVGTPVTDAGLEHLKGLTELKKLYLVDTKVTDAG 130
Query: 317 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 376
L HL GL NLE ++L T + D + L L +L++L L ++TD G T
Sbjct: 131 LAHLKGLKNLEVLSLVGTQVGDAGVDSLKDLPNLQTLFLLGSKVTDEGTKKAVEALPKTR 190
Query: 377 LDL 379
+DL
Sbjct: 191 IDL 193
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 62/111 (55%)
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
++L ++SD K+G L L+L +TD L HLKGLT L+ L L + D G
Sbjct: 71 VSLAITKVSDSDLVVLEKLGKLTRLSLVGTPVTDAGLEHLKGLTELKKLYLVDTKVTDAG 130
Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
L +L GL NL+ L L TQVG +G+ L L NL+++ L + ++D +K
Sbjct: 131 LAHLKGLKNLEVLSLVGTQVGDAGVDSLKDLPNLQTLFLLGSKVTDEGTKK 181
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 70/148 (47%), Gaps = 27/148 (18%)
Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
D P +TN+ ++ +KV+DS + L+ L KLT L+L G PVT
Sbjct: 61 DKAPGKPVTNV---SLAITKVSDSDLVVLEKLGKLTRLSLVGTPVT-------------- 103
Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
D G E + LK L L ++TD L HLKGL NLE L+L +GD
Sbjct: 104 ----------DAGLEHLKGLTELKKLYLVDTKVTDAGLAHLKGLKNLEVLSLVGTQVGDA 153
Query: 292 GLVNLTGLCNLKCLELSDTQVGSSGLRH 319
G+ +L L NL+ L L ++V G +
Sbjct: 154 GVDSLKDLPNLQTLFLLGSKVTDEGTKK 181
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 64/100 (64%), Gaps = 1/100 (1%)
Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 207
LV L+ L KL L++ +TD+ ++ L GLT LK L + +KVTD+G+A+LKGL+ L
Sbjct: 83 LVVLEKLGKLTRLSL-VGTPVTDAGLEHLKGLTELKKLYLVDTKVTDAGLAHLKGLKNLE 141
Query: 208 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 247
+L+L G V A +DSL L +L L L +++D+G +K
Sbjct: 142 VLSLVGTQVGDAGVDSLKDLPNLQTLFLLGSKVTDEGTKK 181
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 55/100 (55%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
++DSD+ L L L L + + VTD+G+ +LKGL +L L L VT A L L L
Sbjct: 78 VSDSDLVVLEKLGKLTRLSLVGTPVTDAGLEHLKGLTELKKLYLVDTKVTDAGLAHLKGL 137
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 267
+L L+L Q+ D G + + +L+ L L +++TDE
Sbjct: 138 KNLEVLSLVGTQVGDAGVDSLKDLPNLQTLFLLGSKVTDE 177
Score = 46.6 bits (109), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 47/89 (52%)
Query: 305 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 364
+ L+ T+V S L L L L ++L T ++D L L GL+ LK L L ++TD G
Sbjct: 71 VSLAITKVSDSDLVVLEKLGKLTRLSLVGTPVTDAGLEHLKGLTELKKLYLVDTKVTDAG 130
Query: 365 LAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L L L L L G ++ D+G L+
Sbjct: 131 LAHLKGLKNLEVLSLVGTQVGDAGVDSLK 159
Score = 44.3 bits (103), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 51 VIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTS 110
V+ + L + L G+ VTD+GL HLK + L+ L + +++D GL HL+GL NL
Sbjct: 84 VVLEKLGKLTRLSLVGTPVTDAGLEHLKGLTELKKL-YLVDTKVTDAGLAHLKGLKNLEV 142
Query: 111 LSF 113
LS
Sbjct: 143 LSL 145
>gi|290996875|ref|XP_002681007.1| leucine-rich repeat family protein [Naegleria gruberi]
gi|284094630|gb|EFC48263.1| leucine-rich repeat family protein [Naegleria gruberi]
Length = 398
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 78/284 (27%), Positives = 125/284 (44%), Gaps = 22/284 (7%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDG--GLEHLRGLSN-LTSLSFRR--NNAITAQ 122
+++ + HL D +++ L ++I + G E LSN L L+ R NN I +Q
Sbjct: 109 NISKNAKYHLSDIFDMKQLK---ILEIGENFIGDEQAELLSNHLKQLTILRINNNLIHSQ 165
Query: 123 GMKAFAGLINLVKLDLERCTRIHGGLVNL---KGLMKLESLNIKWCNCITDSDM-----K 174
G+K + L L +LDL G N + K+E L N + M
Sbjct: 166 GVKHLSKLDQLTELDLS------GNAFNDTIGSEIAKMEQLKTLHVNKLARHRMGSRLGS 219
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
L L SL IS + + D G + L +LT L + G + SLS L L L+
Sbjct: 220 QFGNLFQLTSLSISNNYIGDEGANEISNLTQLTELYVHGAEIGYRGARSLSVLHQLTKLD 279
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
++ + D+G F ++ L L + N I D + + L SL + S IG+EG
Sbjct: 280 ISTNHIGDEGVRLFKQLSKLTELVVFNNRIGDVGAQLISEIPQLTSLVVSSNQIGNEGAK 339
Query: 295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
+++ + LK L ++ Q+G G + LS + L I + IS+
Sbjct: 340 SISQMSKLKYLSINGNQIGDQGAKLLSEMNQLRRIEVYGNNISN 383
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 114/255 (44%), Gaps = 27/255 (10%)
Query: 162 IKWCNCIT-DSDMKPLSGLTNLKSLQISCS--------------KVTDSGIAYL------ 200
++ C C+T D D++P+S ++ L L IS + K+ + G ++
Sbjct: 84 LELCECLTGDKDIRPISRMSQLTKLNISKNAKYHLSDIFDMKQLKILEIGENFIGDEQAE 143
Query: 201 ---KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 257
L++LT+L + + + + LS L L L+L+ +D + +K+ LK L
Sbjct: 144 LLSNHLKQLTILRINNNLIHSQGVKHLSKLDQLTELDLSGNAFNDTIGSEIAKMEQLKTL 203
Query: 258 N---LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 314
+ L + + L L SL++ + IGDEG ++ L L L + ++G
Sbjct: 204 HVNKLARHRMGSRLGSQFGNLFQLTSLSISNNYIGDEGANEISNLTQLTELYVHGAEIGY 263
Query: 315 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 374
G R LS L L +++S I D +R LS L L + +I D G ++ + L
Sbjct: 264 RGARSLSVLHQLTKLDISTNHIGDEGVRLFKQLSKLTELVVFNNRIGDVGAQLISEIPQL 323
Query: 375 THLDLFGARITDSGA 389
T L + +I + GA
Sbjct: 324 TSLVVSSNQIGNEGA 338
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 71/292 (24%), Positives = 133/292 (45%), Gaps = 31/292 (10%)
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG-LTNL 182
++ + + L KL++ + + H L ++ + +L+ L I N I D + LS L L
Sbjct: 96 IRPISRMSQLTKLNISKNAKYH--LSDIFDMKQLKILEI-GENFIGDEQAELLSNHLKQL 152
Query: 183 KSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
L+I+ + + G+ +L L +LT L+L G ++ + L L++N+
Sbjct: 153 TILRINNNLIHSQGVKHLSKLDQLTELDLSGNAFNDTIGSEIAKMEQLKTLHVNKLARHR 212
Query: 243 DGCEKFSKIGSLKVL-----------NLGFNEITD-----ECLVH-----------LKGL 275
G S+ G+L L + G NEI++ E VH L L
Sbjct: 213 MGSRLGSQFGNLFQLTSLSISNNYIGDEGANEISNLTQLTELYVHGAEIGYRGARSLSVL 272
Query: 276 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 335
L L++ + IGDEG+ L L L + + ++G G + +S + L S+ +S
Sbjct: 273 HQLTKLDISTNHIGDEGVRLFKQLSKLTELVVFNNRIGDVGAQLISEIPQLTSLVVSSNQ 332
Query: 336 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 387
I + + ++ +S LK L+++ QI D G L+ + L ++++G I++
Sbjct: 333 IGNEGAKSISQMSKLKYLSINGNQIGDQGAKLLSEMNQLRRIEVYGNNISNE 384
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 102/235 (43%), Gaps = 23/235 (9%)
Query: 50 DVIASQGSSLLS-------VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGL--E 100
++I SQG LS +DLSG+ D+ + L++L N + G
Sbjct: 160 NLIHSQGVKHLSKLDQLTELDLSGNAFNDTIGSEIAKMEQLKTLHVNKLARHRMGSRLGS 219
Query: 101 HLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG------L 154
L LTSLS NN I +G + L L +L +HG + +G L
Sbjct: 220 QFGNLFQLTSLSIS-NNYIGDEGANEISNLTQLTEL------YVHGAEIGYRGARSLSVL 272
Query: 155 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 214
+L L+I N I D ++ L+ L L + +++ D G + + +LT L +
Sbjct: 273 HQLTKLDIS-TNHIGDEGVRLFKQLSKLTELVVFNNRIGDVGAQLISEIPQLTSLVVSSN 331
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
+ S+S + L YL++N Q+ D G + S++ L+ + + N I++E
Sbjct: 332 QIGNEGAKSISQMSKLKYLSINGNQIGDQGAKLLSEMNQLRRIEVYGNNISNEIF 386
>gi|405954703|gb|EKC22070.1| F-box/LRR-repeat protein 14 [Crassostrea gigas]
Length = 403
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 80/279 (28%), Positives = 141/279 (50%), Gaps = 42/279 (15%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEH 101
+ D + IA ++L ++L G S++T++GL+ + L++L+ C ISD G+ H
Sbjct: 137 ITDNSLGRIAQYLTNLEVLELGGCSNITNTGLLLIAWGLRKLKTLNLRSCRHISDVGIGH 196
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK----GLMKL 157
L G S A AG + + L L+ C ++ ++LK GL+ L
Sbjct: 197 LAGNSP-----------------NAAAGTLEIENLGLQDCQKLTD--LSLKHLSCGLVNL 237
Query: 158 ESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCP 215
++LN+ +C +TDS +K LS + ++ + + SC ++D G+ YL +G ++T L++ C
Sbjct: 238 KTLNLSFCGSVTDSGVKFLSKMQTMREINLRSCDNISDVGLGYLAEGGSRITSLDVSFCD 297
Query: 216 VTA--ACLDSLSALGSLFYLNLNRCQLSDDGCEKF-SKIGSLKVLNLG-FNEITDECLV- 270
+ L SL ++L+ C +SD+G + + + + LN+G ITD+ L
Sbjct: 298 KVGDEGLVHLAQGLFSLRNISLSACNISDEGLNRLVNTLQDITTLNIGQCVRITDKGLSL 357
Query: 271 ---HLKGLTNLESLNLDSC----GIGDEGLVNLTGLCNL 302
HLK NL+S++L C +G E ++ L GL L
Sbjct: 358 IADHLK---NLQSIDLYGCTRITTVGLERIMQLRGLTTL 393
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 107/382 (28%), Positives = 169/382 (44%), Gaps = 68/382 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+L++ S V D G + + C + + +N C+ HLR R N
Sbjct: 17 PEVLTIIFSYLSVRDKGRVA-QVCVKWRDVAYNRCVWRGVCAKLHLR----------RAN 65
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
++ +K G+ + L L+R R + G+ +E+LN+ C +TD +
Sbjct: 66 PSLFPSLVKR--GIKRVQILSLKRSLRD-----VVVGIPNVETLNLSGCFVVTDHALGHA 118
Query: 177 --SGLTNLKSLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGCP--VTAACLDSLSALGSL 230
L + L +S C ++TD+ + + + L L +L L GC L L L
Sbjct: 119 FSQDLPCMTVLNLSLCKQITDNSLGRIAQYLTNLEVLELGGCSNITNTGLLLIAWGLRKL 178
Query: 231 FYLNLNRCQ-LSDDGCEKF------SKIGSLKVLNLGFNE---ITDECLVHLK-GLTNLE 279
LNL C+ +SD G + G+L++ NLG + +TD L HL GL NL+
Sbjct: 179 KTLNLRSCRHISDVGIGHLAGNSPNAAAGTLEIENLGLQDCQKLTDLSLKHLSCGLVNLK 238
Query: 280 SLNLDSCG-IGDEGLVNLTGLCNLK------CLELSDT---------------------Q 311
+LNL CG + D G+ L+ + ++ C +SD +
Sbjct: 239 TLNLSFCGSVTDSGVKFLSKMQTMREINLRSCDNISDVGLGYLAEGGSRITSLDVSFCDK 298
Query: 312 VGSSGLRHLS-GLTNLESINLSFTGISDGSLRKLAG-LSSLKSLNL-DARQITDTGLAAL 368
VG GL HL+ GL +L +I+LS ISD L +L L + +LN+ +ITD GL+ +
Sbjct: 299 VGDEGLVHLAQGLFSLRNISLSACNISDEGLNRLVNTLQDITTLNIGQCVRITDKGLSLI 358
Query: 369 T-SLTGLTHLDLFG-ARITDSG 388
L L +DL+G RIT G
Sbjct: 359 ADHLKNLQSIDLYGCTRITTVG 380
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 71/218 (32%), Positives = 116/218 (53%), Gaps = 32/218 (14%)
Query: 202 GLQKLTLLNLEGCPVTAACLDSLSALGSLF--------YLNLNRC-QLSDDGCEKFSK-I 251
G+ + LNL GC V ALG F LNL+ C Q++D+ + ++ +
Sbjct: 95 GIPNVETLNLSGCFVVTD-----HALGHAFSQDLPCMTVLNLSLCKQITDNSLGRIAQYL 149
Query: 252 GSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIGDEGLVNLTG--------LC 300
+L+VL LG + IT+ L+ + GL L++LNL SC I D G+ +L G
Sbjct: 150 TNLEVLELGGCSNITNTGLLLIAWGLRKLKTLNLRSCRHISDVGIGHLAGNSPNAAAGTL 209
Query: 301 NLKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLDA 357
++ L L D Q + L+HLS GL NL+++NLSF G ++D ++ L+ + +++ +NL +
Sbjct: 210 EIENLGLQDCQKLTDLSLKHLSCGLVNLKTLNLSFCGSVTDSGVKFLSKMQTMREINLRS 269
Query: 358 -RQITDTGLAALTS-LTGLTHLDL-FGARITDSGAAYL 392
I+D GL L + +T LD+ F ++ D G +L
Sbjct: 270 CDNISDVGLGYLAEGGSRITSLDVSFCDKVGDEGLVHL 307
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 76/148 (51%), Gaps = 5/148 (3%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAF 127
VTDSG+ L ++ ++ C ISD GL +L G S +TSL + + +G+
Sbjct: 248 VTDSGVKFLSKMQTMREINLRSCDNISDVGLGYLAEGGSRITSLDVSFCDKVGDEGLVHL 307
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL-KGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKS 184
A GL +L + L C GL L L + +LNI C ITD + ++ L NL+S
Sbjct: 308 AQGLFSLRNISLSACNISDEGLNRLVNTLQDITTLNIGQCVRITDKGLSLIADHLKNLQS 367
Query: 185 LQI-SCSKVTDSGIAYLKGLQKLTLLNL 211
+ + C+++T G+ + L+ LT LNL
Sbjct: 368 IDLYGCTRITTVGLERIMQLRGLTTLNL 395
>gi|298709830|emb|CBJ31628.1| Putative Leucine Rich Repeat Protein [Ectocarpus siliculosus]
Length = 984
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 81/260 (31%), Positives = 113/260 (43%), Gaps = 29/260 (11%)
Query: 154 LMKLESLNIKWCNC--ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
L KLE+L W N IT + + L GL+ LK+L +S +K+T S L GL KL L L
Sbjct: 89 LGKLETL---WLNGNEITGTIPEALGGLSELKNLSMSANKLTGSIPRKLGGLGKLEELYL 145
Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK--------------------- 250
G ++ + L LG + L L+ QLS E
Sbjct: 146 NGNQLSGSIPGELGGLGKVQILRLDGNQLSGPIPEALGALRELKNLDMSDNKLTGSIPGV 205
Query: 251 ---IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 307
+G LK+L L N ++ L GL + L LD + L GL LK L +
Sbjct: 206 LGGLGELKILFLNDNHLSGSIPGELGGLGKVHILRLDGNQLTGTIPEALGGLSELKNLSM 265
Query: 308 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 367
S ++ S R L GL LE + L +S R+L GL + L LD Q+T A
Sbjct: 266 SANKLTGSIPRKLGGLGKLEELCLYGNQLSGSIPRELGGLGKVHILRLDGNQLTGPIPEA 325
Query: 368 LTSLTGLTHLDLFGARITDS 387
L +L L +LD+ ++T S
Sbjct: 326 LGALRELKNLDMSDNKLTGS 345
Score = 46.2 bits (108), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 67/134 (50%), Gaps = 1/134 (0%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
L GL K+ L + N +T + + L GL+ LK+L +S +K+T S L GL KL L
Sbjct: 230 LGGLGKVHILRLD-GNQLTGTIPEALGGLSELKNLSMSANKLTGSIPRKLGGLGKLEELC 288
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
L G ++ + L LG + L L+ QL+ E + LK L++ N++T
Sbjct: 289 LYGNQLSGSIPRELGGLGKVHILRLDGNQLTGPIPEALGALRELKNLDMSDNKLTGSIPG 348
Query: 271 HLKGLTNLESLNLD 284
L GL LE L L+
Sbjct: 349 VLGGLGKLERLWLN 362
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 90/200 (45%), Gaps = 29/200 (14%)
Query: 193 TDSGIAYLKGLQ-----KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 247
TD+G+A KG++ ++ L L + ++L AL L L ++ +++ +
Sbjct: 26 TDAGVATWKGVKVNHAGRVVGLFLPDNDLHGPIPEALGALSELKKLFVHDNKVTGSIPRE 85
Query: 248 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 307
++G L+ L L NEIT L GL+ L++L++ + LTG
Sbjct: 86 LGRLGKLETLWLNGNEITGTIPEALGGLSELKNLSMSAN--------KLTG--------- 128
Query: 308 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 367
S R L GL LE + L+ +S +L GL ++ L LD Q++ A
Sbjct: 129 -------SIPRKLGGLGKLEELYLNGNQLSGSIPGELGGLGKVQILRLDGNQLSGPIPEA 181
Query: 368 LTSLTGLTHLDLFGARITDS 387
L +L L +LD+ ++T S
Sbjct: 182 LGALRELKNLDMSDNKLTGS 201
>gi|71422249|ref|XP_812074.1| leucine-rich repeat protein (LRRP) [Trypanosoma cruzi strain CL
Brener]
gi|70876812|gb|EAN90223.1| leucine-rich repeat protein (LRRP), putative [Trypanosoma cruzi]
Length = 415
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 106/217 (48%), Gaps = 9/217 (4%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S SL S+DLS + VTD GL+ L C L+ +D + C I L ++ + L L
Sbjct: 166 SHLHSLKSLDLSRTGVTDDGLLALTACHLLEEVDLSGCDFIC--ALPFMKSMGCLRVLKL 223
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
RN+ IT + + A LV LD+ C + L L GL +LE +N WC I D +
Sbjct: 224 -RNSGITDRAISAIGAATALVHLDIAGCFLV-TSLNPLGGLKRLEWMNASWCG-IRDGGV 280
Query: 174 KPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
+ LS NL+ L ++ C + + + L L KL +L+L G V + LS SL
Sbjct: 281 EGLSCCGNLEYLSMARCWDIHNVNV--LGVLSKLQVLDLCGTNVDDEGIAGLSRCASLCS 338
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
L+L+ C + + SLK +++ + +T+E L
Sbjct: 339 LSLSDC-FCIYSVRALAAMPSLKEMDVSYTAVTEESL 374
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 73/268 (27%), Positives = 131/268 (48%), Gaps = 11/268 (4%)
Query: 77 LKDCSNLQSLDFNFCIQ--ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134
L D +L+ L F F + + + L L L L R +T ++A + L +L
Sbjct: 115 LTDVKDLRGLRFLFIPEAILLNKTLSPLASCPTLEHLWLRSCRTLTR--VEALSHLHSLK 172
Query: 135 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 194
LDL R GL+ L LE +++ C+ I + + + L+ L++ S +TD
Sbjct: 173 SLDLSRTGVTDDGLLALTACHLLEEVDLSGCDFIC--ALPFMKSMGCLRVLKLRNSGITD 230
Query: 195 SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL 254
I+ + L L++ GC + + L+ L L L ++N + C + D G E S G+L
Sbjct: 231 RAISAIGAATALVHLDIAGCFLVTS-LNPLGGLKRLEWMNASWCGIRDGGVEGLSCCGNL 289
Query: 255 KVLNLGFNEITDECLVHLKG-LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 313
+ L++ D V++ G L+ L+ L+L + DEG+ L+ +L L LSD
Sbjct: 290 EYLSMA--RCWDIHNVNVLGVLSKLQVLDLCGTNVDDEGIAGLSRCASLCSLSLSDCFCI 347
Query: 314 SSGLRHLSGLTNLESINLSFTGISDGSL 341
S +R L+ + +L+ +++S+T +++ SL
Sbjct: 348 YS-VRALAAMPSLKEMDVSYTAVTEESL 374
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 72/238 (30%), Positives = 110/238 (46%), Gaps = 30/238 (12%)
Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
LE L ++ +C T + ++ LS L +LKSL +S + VTD G+ L L ++L GC
Sbjct: 148 LEHLWLR--SCRTLTRVEALSHLHSLKSLDLSRTGVTDDGLLALTACHLLEEVDLSGCDF 205
Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGL 275
A L + ++G L L L ++D +L L++ G +T L L GL
Sbjct: 206 ICA-LPFMKSMGCLRVLKLRNSGITDRAISAIGAATALVHLDIAGCFLVTS--LNPLGGL 262
Query: 276 TNLESLNLDSCGIGDEGL----------------------VNLTG-LCNLKCLELSDTQV 312
LE +N CGI D G+ VN+ G L L+ L+L T V
Sbjct: 263 KRLEWMNASWCGIRDGGVEGLSCCGNLEYLSMARCWDIHNVNVLGVLSKLQVLDLCGTNV 322
Query: 313 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 370
G+ LS +L S++LS S+R LA + SLK +++ +T+ L+ L S
Sbjct: 323 DDEGIAGLSRCASLCSLSLS-DCFCIYSVRALAAMPSLKEMDVSYTAVTEESLSLLPS 379
Score = 38.5 bits (88), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 2/134 (1%)
Query: 254 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 313
L+ L + + ++ L L LE L L SC + L+ L +LK L+LS T V
Sbjct: 124 LRFLFIPEAILLNKTLSPLASCPTLEHLWLRSCRTLTR-VEALSHLHSLKSLDLSRTGVT 182
Query: 314 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 373
GL L+ LE ++LS +L + + L+ L L ITD ++A+ + T
Sbjct: 183 DDGLLALTACHLLEEVDLSGCDFI-CALPFMKSMGCLRVLKLRNSGITDRAISAIGAATA 241
Query: 374 LTHLDLFGARITDS 387
L HLD+ G + S
Sbjct: 242 LVHLDIAGCFLVTS 255
>gi|422411730|ref|ZP_16488689.1| internalin A, partial [Listeria innocua FSL S4-378]
gi|313620695|gb|EFR91985.1| internalin A [Listeria innocua FSL S4-378]
Length = 434
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 88/276 (31%), Positives = 140/276 (50%), Gaps = 23/276 (8%)
Query: 120 TAQGMKAFAGLINLVKLD-LERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
TA G + A ++ LD + T G+ +++G+ L +L + SD+ PL G
Sbjct: 54 TALGKSSTAEVVTQTDLDTINSLTLTSKGISSIEGMNYLTNLGTLILSSNQVSDISPLKG 113
Query: 179 LTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
LTNL LQ+S + ++D S ++ LK LQ L + + + +T LS L +L L L
Sbjct: 114 LTNLTMLQLSGNPISDISALSNLKNLQALDINDAQITDITP-----LSGLTNLKGLGLYN 168
Query: 238 CQLSD-DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
QL + G ++ SL V N N++T+ L L+ L+NL L + I + L L
Sbjct: 169 NQLENLSGVNNLQQLRSLNVSN---NKLTN--LDELQALSNLGVLYANGNQINN--LQGL 221
Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN-L 355
+ L NL L+LS Q+ + L+GLTN++++ LS ISD + GLSSL +L+ L
Sbjct: 222 STLKNLFLLDLSTNQIMDT--TPLAGLTNVQTLYLSNNQISD-----VTGLSSLINLDWL 274
Query: 356 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
D Q + + L SLT LT + + I + ++
Sbjct: 275 DISQNKISNIRPLNSLTKLTIIQMTNQLIVNEPISF 310
Score = 44.3 bits (103), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 82/310 (26%), Positives = 133/310 (42%), Gaps = 81/310 (26%)
Query: 76 HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135
+ D S L+ L +Q+S + + LSNL NL
Sbjct: 104 QVSDISPLKGLTNLTMLQLSGNPISDISALSNLK----------------------NLQA 141
Query: 136 LDLE--RCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN---LKSLQIS 188
LD+ + T I GL NLKGL + ++ ++ LSG+ N L+SL +S
Sbjct: 142 LDINDAQITDITPLSGLTNLKGL------------GLYNNQLENLSGVNNLQQLRSLNVS 189
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 248
+K+T+ LD L AL +L L N Q+++ +
Sbjct: 190 NNKLTN--------------------------LDELQALSNLGVLYANGNQINN--LQGL 221
Query: 249 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 308
S + +L +L+L N+I D L GLTN+++L L + I D + L+ L NL L++S
Sbjct: 222 STLKNLFLLDLSTNQIMDTT--PLAGLTNVQTLYLSNNQISD--VTGLSSLINLDWLDIS 277
Query: 309 DTQVGSSGLRHLSGLTNLESINLSFT-----GISDGSLRKLAGL-SSLKSLNLDARQITD 362
++ S +R L+ LT L I ++ IS S + L ++ +D I+D
Sbjct: 278 QNKI--SNIRPLNSLTKLTIIQMTNQLIVNEPISFESTITIPNLIKNIAEQTIDPDTISD 335
Query: 363 TGLAALTSLT 372
+G+ A S+T
Sbjct: 336 SGVYANGSVT 345
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.319 0.137 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,571,203,849
Number of Sequences: 23463169
Number of extensions: 218786645
Number of successful extensions: 698577
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 4902
Number of HSP's successfully gapped in prelim test: 15780
Number of HSP's that attempted gapping in prelim test: 562775
Number of HSP's gapped (non-prelim): 84404
length of query: 396
length of database: 8,064,228,071
effective HSP length: 145
effective length of query: 251
effective length of database: 8,957,035,862
effective search space: 2248216001362
effective search space used: 2248216001362
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 78 (34.7 bits)