Query 016017
Match_columns 396
No_of_seqs 238 out of 3704
Neff 11.3
Searched_HMMs 46136
Date Fri Mar 29 03:02:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016017.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016017hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 2E-33 4.3E-38 281.4 18.9 350 32-385 70-441 (968)
2 PLN00113 leucine-rich repeat r 100.0 6.2E-33 1.3E-37 277.9 18.7 327 55-384 138-464 (968)
3 KOG4194 Membrane glycoprotein 100.0 4E-32 8.6E-37 235.7 0.5 334 53-390 74-434 (873)
4 KOG4194 Membrane glycoprotein 100.0 3.9E-31 8.4E-36 229.6 4.0 330 58-391 53-411 (873)
5 KOG0444 Cytoskeletal regulator 99.9 5.3E-25 1.2E-29 193.7 -6.3 317 56-382 31-372 (1255)
6 KOG0444 Cytoskeletal regulator 99.9 1.5E-24 3.2E-29 190.9 -5.9 295 55-359 53-373 (1255)
7 cd00116 LRR_RI Leucine-rich re 99.8 4.6E-19 9.9E-24 156.0 19.1 273 111-383 3-318 (319)
8 PLN03210 Resistant to P. syrin 99.8 8.1E-20 1.7E-24 184.1 15.3 287 82-385 612-907 (1153)
9 cd00116 LRR_RI Leucine-rich re 99.8 1.2E-18 2.7E-23 153.2 19.2 260 99-359 16-318 (319)
10 PLN03210 Resistant to P. syrin 99.8 1.4E-18 3.1E-23 175.1 16.6 287 56-359 610-904 (1153)
11 KOG0472 Leucine-rich repeat pr 99.8 3.2E-21 6.9E-26 161.1 -5.2 52 333-385 490-541 (565)
12 KOG0618 Serine/threonine phosp 99.8 3.8E-20 8.1E-25 169.9 -2.5 181 205-388 242-423 (1081)
13 KOG0472 Leucine-rich repeat pr 99.7 3.2E-20 7E-25 155.2 -6.3 108 252-362 435-542 (565)
14 KOG4341 F-box protein containi 99.7 9.1E-18 2E-22 141.4 6.2 358 1-358 74-462 (483)
15 KOG4341 F-box protein containi 99.7 8.4E-18 1.8E-22 141.6 4.7 340 33-396 87-451 (483)
16 KOG4237 Extracellular matrix p 99.7 6.5E-19 1.4E-23 147.1 -4.3 130 82-214 68-198 (498)
17 KOG0618 Serine/threonine phosp 99.7 4.7E-18 1E-22 156.4 -0.6 305 59-383 158-487 (1081)
18 KOG4237 Extracellular matrix p 99.7 8.2E-18 1.8E-22 140.6 -1.3 256 55-312 65-358 (498)
19 KOG1909 Ran GTPase-activating 99.6 1.1E-15 2.3E-20 126.2 10.6 195 201-395 89-323 (382)
20 PRK15387 E3 ubiquitin-protein 99.6 3.3E-14 7.1E-19 134.4 12.0 164 180-368 302-465 (788)
21 PRK15387 E3 ubiquitin-protein 99.5 5.8E-14 1.3E-18 132.7 12.1 264 82-392 202-465 (788)
22 KOG1909 Ran GTPase-activating 99.5 1.6E-13 3.4E-18 113.6 11.8 218 176-393 26-291 (382)
23 KOG2120 SCF ubiquitin ligase, 99.5 2.9E-14 6.2E-19 115.4 4.7 264 1-286 100-373 (419)
24 PRK15370 E3 ubiquitin-protein 99.4 6.6E-13 1.4E-17 126.3 9.2 234 131-392 199-435 (754)
25 KOG3207 Beta-tubulin folding c 99.4 2.4E-13 5.3E-18 115.7 3.6 208 32-241 122-339 (505)
26 KOG2120 SCF ubiquitin ligase, 99.3 2.3E-12 4.9E-17 104.6 5.2 181 57-262 185-373 (419)
27 PRK15370 E3 ubiquitin-protein 99.3 1.7E-11 3.7E-16 116.8 10.9 80 276-361 346-428 (754)
28 KOG4658 Apoptotic ATPase [Sign 99.2 1.5E-12 3.3E-17 125.8 -1.1 206 3-213 452-677 (889)
29 KOG0617 Ras suppressor protein 99.2 1.6E-13 3.4E-18 102.2 -7.8 159 202-365 31-190 (264)
30 KOG3207 Beta-tubulin folding c 99.1 1.4E-11 3.1E-16 105.1 1.8 210 152-362 118-340 (505)
31 KOG0617 Ras suppressor protein 99.1 1.8E-13 3.9E-18 101.9 -8.4 156 178-338 31-187 (264)
32 COG5238 RNA1 Ran GTPase-activa 99.1 7.5E-11 1.6E-15 94.6 4.2 248 126-388 25-319 (388)
33 PF14580 LRR_9: Leucine-rich r 99.1 6.7E-11 1.5E-15 91.8 3.4 104 229-336 20-125 (175)
34 PF14580 LRR_9: Leucine-rich r 99.0 4.9E-10 1.1E-14 87.0 4.3 122 253-378 20-146 (175)
35 KOG1259 Nischarin, modulator o 98.9 5.3E-10 1.2E-14 91.2 1.9 225 102-338 178-413 (490)
36 KOG4658 Apoptotic ATPase [Sign 98.9 7.2E-10 1.6E-14 107.6 3.0 272 55-333 543-828 (889)
37 KOG1259 Nischarin, modulator o 98.9 5.8E-10 1.3E-14 91.0 1.3 128 252-385 284-412 (490)
38 COG5238 RNA1 Ran GTPase-activa 98.8 3.2E-08 6.9E-13 79.9 10.2 211 176-386 26-286 (388)
39 PF13855 LRR_8: Leucine rich r 98.7 1.5E-09 3.4E-14 69.2 -0.2 59 325-383 2-60 (61)
40 PF13855 LRR_8: Leucine rich r 98.7 9.4E-09 2E-13 65.5 2.1 61 300-360 1-61 (61)
41 KOG3665 ZYG-1-like serine/thre 98.6 1.3E-07 2.8E-12 89.9 8.8 151 228-380 122-283 (699)
42 KOG2982 Uncharacterized conser 98.6 3E-08 6.6E-13 81.1 3.9 207 82-289 46-262 (418)
43 PLN03150 hypothetical protein; 98.6 9.1E-08 2E-12 91.0 7.2 105 278-382 420-525 (623)
44 KOG1947 Leucine rich repeat pr 98.6 1E-07 2.2E-12 89.0 6.8 61 179-239 242-306 (482)
45 KOG3665 ZYG-1-like serine/thre 98.6 3.7E-07 8.1E-12 86.8 10.4 201 180-394 60-272 (699)
46 KOG1947 Leucine rich repeat pr 98.5 1.3E-07 2.8E-12 88.4 6.1 237 103-359 185-438 (482)
47 PLN03150 hypothetical protein; 98.5 3.5E-07 7.5E-12 87.1 7.7 106 254-359 420-526 (623)
48 KOG2982 Uncharacterized conser 98.4 2.4E-07 5.3E-12 75.9 4.3 232 155-388 45-293 (418)
49 COG4886 Leucine-rich repeat (L 98.4 3.1E-07 6.6E-12 83.3 5.3 179 177-363 113-292 (394)
50 KOG1859 Leucine-rich repeat pr 98.4 1.3E-08 2.7E-13 93.0 -4.0 127 254-386 166-293 (1096)
51 COG4886 Leucine-rich repeat (L 98.3 4.9E-07 1.1E-11 82.0 4.5 183 151-342 112-295 (394)
52 KOG0531 Protein phosphatase 1, 98.3 3.3E-08 7.1E-13 89.8 -3.3 197 176-385 91-290 (414)
53 KOG0532 Leucine-rich repeat (L 98.3 2E-08 4.4E-13 89.1 -5.9 191 184-383 79-271 (722)
54 KOG1859 Leucine-rich repeat pr 98.2 4.1E-08 9E-13 89.8 -4.7 126 230-361 166-292 (1096)
55 KOG4579 Leucine-rich repeat (L 98.1 1.1E-06 2.4E-11 63.6 1.7 82 301-384 54-135 (177)
56 KOG0531 Protein phosphatase 1, 98.1 2.1E-07 4.6E-12 84.6 -2.5 241 130-386 71-319 (414)
57 KOG0532 Leucine-rich repeat (L 97.9 2.6E-07 5.6E-12 82.4 -6.0 177 205-390 76-252 (722)
58 PF12799 LRR_4: Leucine Rich r 97.9 9.4E-06 2E-10 47.2 2.3 36 325-361 2-37 (44)
59 KOG3864 Uncharacterized conser 97.9 1E-05 2.2E-10 62.8 2.9 85 58-142 102-187 (221)
60 PF12799 LRR_4: Leucine Rich r 97.8 5.2E-05 1.1E-09 44.1 4.0 37 349-386 2-38 (44)
61 KOG3864 Uncharacterized conser 97.6 3.4E-05 7.3E-10 60.0 2.6 81 277-357 102-185 (221)
62 KOG2123 Uncharacterized conser 97.6 9E-06 2E-10 66.3 -1.0 99 276-378 19-123 (388)
63 KOG1644 U2-associated snRNP A' 97.6 7.3E-05 1.6E-09 58.2 3.5 105 228-334 42-150 (233)
64 KOG4579 Leucine-rich repeat (L 97.5 2E-05 4.3E-10 57.2 -0.1 107 229-337 28-136 (177)
65 PF13306 LRR_5: Leucine rich r 97.5 6.8E-05 1.5E-09 56.1 2.7 121 248-374 8-128 (129)
66 KOG2123 Uncharacterized conser 97.4 3E-05 6.5E-10 63.4 -0.7 83 299-385 18-101 (388)
67 KOG4308 LRR-containing protein 97.3 4.7E-05 1E-09 69.6 0.1 181 182-362 89-304 (478)
68 KOG1644 U2-associated snRNP A' 97.3 0.00023 5.1E-09 55.5 3.8 107 276-384 42-152 (233)
69 PF13306 LRR_5: Leucine rich r 97.3 0.00021 4.5E-09 53.5 2.8 59 200-260 8-66 (129)
70 KOG2739 Leucine-rich acidic nu 97.1 0.00024 5.2E-09 57.8 1.4 86 199-284 60-151 (260)
71 KOG2739 Leucine-rich acidic nu 97.0 0.00025 5.4E-09 57.7 1.1 106 275-382 42-153 (260)
72 PRK15386 type III secretion pr 97.0 0.0031 6.7E-08 55.9 7.9 138 175-334 47-187 (426)
73 KOG4308 LRR-containing protein 96.9 0.00019 4.2E-09 65.6 -0.7 238 157-394 89-369 (478)
74 PF13516 LRR_6: Leucine Rich r 96.5 0.002 4.4E-08 31.8 1.8 22 372-393 2-23 (24)
75 PRK15386 type III secretion pr 96.3 0.0076 1.7E-07 53.6 5.5 140 197-359 45-188 (426)
76 smart00367 LRR_CC Leucine-rich 96.3 0.0052 1.1E-07 31.0 2.6 24 371-394 1-25 (26)
77 smart00368 LRR_RI Leucine rich 96.0 0.0086 1.9E-07 30.8 2.5 24 372-395 2-25 (28)
78 PF13516 LRR_6: Leucine Rich r 95.1 0.021 4.7E-07 28.0 2.1 21 348-368 2-22 (24)
79 smart00367 LRR_CC Leucine-rich 94.1 0.063 1.4E-06 26.9 2.4 21 81-101 2-22 (26)
80 PF13504 LRR_7: Leucine rich r 93.4 0.034 7.4E-07 24.7 0.6 14 373-386 2-15 (17)
81 PF00560 LRR_1: Leucine Rich R 91.4 0.083 1.8E-06 25.2 0.6 12 326-337 2-13 (22)
82 smart00368 LRR_RI Leucine rich 90.1 0.52 1.1E-05 24.1 2.9 21 348-368 2-22 (28)
83 smart00369 LRR_TYP Leucine-ric 87.7 0.35 7.5E-06 24.1 1.2 20 372-391 2-21 (26)
84 smart00370 LRR Leucine-rich re 87.7 0.35 7.5E-06 24.1 1.2 20 372-391 2-21 (26)
85 smart00365 LRR_SD22 Leucine-ri 75.0 2.5 5.5E-05 21.1 1.6 16 372-387 2-17 (26)
86 KOG3763 mRNA export factor TAP 70.9 6 0.00013 36.7 4.0 63 273-337 215-283 (585)
87 KOG3763 mRNA export factor TAP 64.5 8.6 0.00019 35.8 3.7 89 50-139 211-309 (585)
88 KOG3735 Tropomodulin and leiom 55.5 16 0.00035 31.7 3.6 66 300-365 198-272 (353)
89 smart00364 LRR_BAC Leucine-ric 51.4 9.2 0.0002 19.1 0.9 17 372-388 2-18 (26)
90 KOG4242 Predicted myosin-I-bin 49.5 77 0.0017 29.3 6.9 285 106-393 135-461 (553)
91 KOG0473 Leucine-rich repeat pr 23.7 1.6 3.5E-05 35.6 -6.7 87 274-363 40-126 (326)
92 PF12937 F-box-like: F-box-lik 22.2 47 0.001 19.1 0.9 14 1-14 3-16 (47)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2e-33 Score=281.43 Aligned_cols=350 Identities=20% Similarity=0.174 Sum_probs=175.0
Q ss_pred ceeEeccCCCCCCCchHHHHHHhcCCCccEEEeecCCCChHHHHHhh-CCCCCCeeeccCCc------------------
Q 016017 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLK-DCSNLQSLDFNFCI------------------ 92 (396)
Q Consensus 32 ~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~------------------ 92 (396)
++..+++.++. +.... ......+++|+.|+++++++++..+..+. .+++|++|+++++.
T Consensus 70 ~v~~L~L~~~~-i~~~~-~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~L 147 (968)
T PLN00113 70 RVVSIDLSGKN-ISGKI-SSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDL 147 (968)
T ss_pred cEEEEEecCCC-ccccC-ChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEEC
Confidence 46666666542 11111 12233567777777777766654444333 55666666665542
Q ss_pred ---ccChhHHHhhhCCCCCcEEeccCCccccHHHHHHHhCCCCCcEecccccccccCcccccCCCCcccEEecCCCCCcc
Q 016017 93 ---QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCIT 169 (396)
Q Consensus 93 ---~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 169 (396)
.+....+..++.+++|++|++++|.. ....+..+.++++|++|++++|......+..+.++++|+.|+++++ .+.
T Consensus 148 s~n~~~~~~p~~~~~l~~L~~L~L~~n~l-~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n-~l~ 225 (968)
T PLN00113 148 SNNMLSGEIPNDIGSFSSLKVLDLGGNVL-VGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYN-NLS 225 (968)
T ss_pred cCCcccccCChHHhcCCCCCEEECccCcc-cccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCC-ccC
Confidence 12222233344445555555554432 2222334444555555555544433333344445555555555542 222
Q ss_pred ccccccccCCCCccEEEeecCCCChhHHHhccCCCCCCEEEecCCCCChhhHHHHhcCCCCCEEECCCCCCChHHHHhhh
Q 016017 170 DSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 249 (396)
Q Consensus 170 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~ 249 (396)
+..+..+.++++|++|++++|.+.+..+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+.
T Consensus 226 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~ 305 (968)
T PLN00113 226 GEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVI 305 (968)
T ss_pred CcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHc
Confidence 23344445555555555555555444444455555555555555554444444455555555555555554444444455
Q ss_pred cCCCCcEEEccCCcCcHHHHHHhhCCCCCCEEeccCCCCChhHhHHHhCCCCccEEEcCCCCCCchhHHhhcCCCCCCEE
Q 016017 250 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 329 (396)
Q Consensus 250 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 329 (396)
.+++|+.|++++|.+.+..+..+..+++|+.|++.+|.+.+..+..+..+++|+.|++++|++++..+..+..+++|+.|
T Consensus 306 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L 385 (968)
T PLN00113 306 QLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKL 385 (968)
T ss_pred CCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEE
Confidence 55555555555555544444445555566666666555554445555555555555555555544333333344444444
Q ss_pred eccCcccChhhhHhhhCCCCCCEeecCCCCCcHHHHHHHhcCccCCeeecCCCccC
Q 016017 330 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385 (396)
Q Consensus 330 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~l~ 385 (396)
++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|+.+++++|+++
T Consensus 386 ~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 441 (968)
T PLN00113 386 ILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQ 441 (968)
T ss_pred ECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCccc
Confidence 44444444444444445555555555555555444444445555555555555444
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=6.2e-33 Score=277.86 Aligned_cols=327 Identities=20% Similarity=0.162 Sum_probs=221.0
Q ss_pred cCCCccEEEeecCCCChHHHHHhhCCCCCCeeeccCCcccChhHHHhhhCCCCCcEEeccCCccccHHHHHHHhCCCCCc
Q 016017 55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134 (396)
Q Consensus 55 ~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 134 (396)
.+++|++|+++++.+++..+..++.+++|++|+++++ .+....+..+.++++|++|++++|.. ....+..+..+++|+
T Consensus 138 ~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~L~~n~l-~~~~p~~l~~l~~L~ 215 (968)
T PLN00113 138 SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGN-VLVGKIPNSLTNLTSLEFLTLASNQL-VGQIPRELGQMKSLK 215 (968)
T ss_pred ccCCCCEEECcCCcccccCChHHhcCCCCCEEECccC-cccccCChhhhhCcCCCeeeccCCCC-cCcCChHHcCcCCcc
Confidence 3567777777777776666777888889999999886 45555667788888899999888874 344456778888888
Q ss_pred EecccccccccCcccccCCCCcccEEecCCCCCccccccccccCCCCccEEEeecCCCChhHHHhccCCCCCCEEEecCC
Q 016017 135 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 214 (396)
Q Consensus 135 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 214 (396)
+|++++|......+..+..+++|+.|++.++. +.+..+..+.++++|++|++++|.+.+..+..+..+++|+.|++++|
T Consensus 216 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n 294 (968)
T PLN00113 216 WIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNN-LTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDN 294 (968)
T ss_pred EEECcCCccCCcCChhHhcCCCCCEEECcCce-eccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCC
Confidence 88888876665666667888888888888743 44456667777888888888888776666666777778888888877
Q ss_pred CCChhhHHHHhcCCCCCEEECCCCCCChHHHHhhhcCCCCcEEEccCCcCcHHHHHHhhCCCCCCEEeccCCCCChhHhH
Q 016017 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294 (396)
Q Consensus 215 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 294 (396)
.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+.
T Consensus 295 ~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~ 374 (968)
T PLN00113 295 SLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPE 374 (968)
T ss_pred eeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCCh
Confidence 77665666677777777777777776665566667777777777777776655566666677777777777766555555
Q ss_pred HHhCCCCccEEEcCCCCCCchhHHhhcCCCCCCEEeccCcccChhhhHhhhCCCCCCEeecCCCCCcHHHHHHHhcCccC
Q 016017 295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 374 (396)
Q Consensus 295 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L 374 (396)
.+..+++|+.|++.+|++.+..+..+..+++|+.|++++|.+++..+..+..++.|+.|++++|.+.+..+..+..+++|
T Consensus 375 ~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 454 (968)
T PLN00113 375 GLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSL 454 (968)
T ss_pred hHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCC
Confidence 55555566666666665555445555555566666666555554445455555555555555555554434444444444
Q ss_pred CeeecCCCcc
Q 016017 375 THLDLFGARI 384 (396)
Q Consensus 375 ~~l~l~~~~l 384 (396)
+.|++++|++
T Consensus 455 ~~L~L~~n~~ 464 (968)
T PLN00113 455 QMLSLARNKF 464 (968)
T ss_pred cEEECcCcee
Confidence 4444444433
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.97 E-value=4e-32 Score=235.74 Aligned_cols=334 Identities=23% Similarity=0.240 Sum_probs=234.3
Q ss_pred HhcCCCccEEEeecCCCChHHHHHhhCCCCCCeeeccCCcccChhHHHhhhCCCCCcEEeccCCccccHHHHHHHhCCCC
Q 016017 53 ASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLIN 132 (396)
Q Consensus 53 ~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 132 (396)
.--++..++|++++|.+.+..+..|.++|+|+++.+..+ .+.. .|...+...+|+.|++.+|. +.....+.++.++.
T Consensus 74 g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N-~Lt~-IP~f~~~sghl~~L~L~~N~-I~sv~se~L~~l~a 150 (873)
T KOG4194|consen 74 GFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKN-ELTR-IPRFGHESGHLEKLDLRHNL-ISSVTSEELSALPA 150 (873)
T ss_pred CcCccceeeeeccccccccCcHHHHhcCCcceeeeeccc-hhhh-cccccccccceeEEeeeccc-cccccHHHHHhHhh
Confidence 335677888999999888888888889999999988775 3333 24433445568888888875 45555567777888
Q ss_pred CcEecccccccccCcccccCCCCcccEEecCCCCCccccccccccCCCCccEEEeecCCCChhHHHhccCCCCCCEEEec
Q 016017 133 LVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212 (396)
Q Consensus 133 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 212 (396)
|++|+++.|.........+..-.++++|++++ +.++......|..+.+|..|.++.|+++...+..|.++++|+.|++.
T Consensus 151 lrslDLSrN~is~i~~~sfp~~~ni~~L~La~-N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLn 229 (873)
T KOG4194|consen 151 LRSLDLSRNLISEIPKPSFPAKVNIKKLNLAS-NRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLN 229 (873)
T ss_pred hhhhhhhhchhhcccCCCCCCCCCceEEeecc-ccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcc
Confidence 88888887654444444566666777777776 44555555566666666666666666666666666666666666666
Q ss_pred CCCCCh------------------------hhHHHHhcCCCCCEEECCCCCCChHHHHhhhcCCCCcEEEccCCcCcHHH
Q 016017 213 GCPVTA------------------------ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 268 (396)
Q Consensus 213 ~~~~~~------------------------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 268 (396)
.|.+.. .....|..+.++++|+++.|.+.......+.+++.|+.|++++|.+...-
T Consensus 230 rN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih 309 (873)
T KOG4194|consen 230 RNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIH 309 (873)
T ss_pred ccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheee
Confidence 654433 22223334455555666555555444445566777777777777766555
Q ss_pred HHHhhCCCCCCEEeccCCCCChhHhHHHhCCCCccEEEcCCCCCCchhHHhhcCCCCCCEEeccCcccCh---hhhHhhh
Q 016017 269 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD---GSLRKLA 345 (396)
Q Consensus 269 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~---~~~~~l~ 345 (396)
...|+.+++|+.|+++.|.+....+..|..+..|++|.+++|.++...-..+..+++|++|+++.|.++. .....+.
T Consensus 310 ~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~ 389 (873)
T KOG4194|consen 310 IDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFN 389 (873)
T ss_pred cchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhc
Confidence 6667778888888888888776666677777788888888888776666667778999999999986543 2445566
Q ss_pred CCCCCCEeecCCCCCcHHHHHHHhcCccCCeeecCCCccChHHHH
Q 016017 346 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 390 (396)
Q Consensus 346 ~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~l~~~~~~ 390 (396)
.+++|++|.+.||++..+.-.+|.++++|++|+|.+|.|..+-..
T Consensus 390 gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~n 434 (873)
T KOG4194|consen 390 GLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPN 434 (873)
T ss_pred cchhhhheeecCceeeecchhhhccCcccceecCCCCcceeeccc
Confidence 789999999999999988778999999999999999976554433
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.96 E-value=3.9e-31 Score=229.64 Aligned_cols=330 Identities=24% Similarity=0.257 Sum_probs=227.8
Q ss_pred CccEEEeecCCCChHHHHHhhCC--CCCCeeeccCCcccChhHHHhhhCCCCCcEEeccCCccccHHHHHHHhCCCCCcE
Q 016017 58 SLLSVDLSGSDVTDSGLIHLKDC--SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135 (396)
Q Consensus 58 ~l~~L~l~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 135 (396)
+-+.++.++..+.......+..+ +.-+.|+++++ .+....+..|.++++|+++++..|.. ...|.......+|+.
T Consensus 53 ~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnN-kl~~id~~~f~nl~nLq~v~l~~N~L--t~IP~f~~~sghl~~ 129 (873)
T KOG4194|consen 53 NTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNN-KLSHIDFEFFYNLPNLQEVNLNKNEL--TRIPRFGHESGHLEK 129 (873)
T ss_pred CceeeecCccccccccccccCCcCccceeeeecccc-ccccCcHHHHhcCCcceeeeeccchh--hhcccccccccceeE
Confidence 55677787777765444445433 35667999996 78998899999999999999999874 233445556778999
Q ss_pred ecccccccccCcccccCCCCcccEEecCCCCCccccccccccCCCCccEEEeecCCCChhHHHhccCCCCCCEEEecCCC
Q 016017 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215 (396)
Q Consensus 136 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 215 (396)
|++.+|.......+.+..++.|++|+++. +.+.......+..-.++++|++++|.|+......|..+.+|..|.++.|+
T Consensus 130 L~L~~N~I~sv~se~L~~l~alrslDLSr-N~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNr 208 (873)
T KOG4194|consen 130 LDLRHNLISSVTSEELSALPALRSLDLSR-NLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNR 208 (873)
T ss_pred EeeeccccccccHHHHHhHhhhhhhhhhh-chhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCc
Confidence 99999766555556788999999999998 66777777788888999999999999999888889899999999999999
Q ss_pred CChhhHHHHhcCCCCCEEECCCCCCChHHHHhhhcCCCCcEEEccCCcCcHHHHHHhhCCCCCCEEeccCCCCChhHhHH
Q 016017 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295 (396)
Q Consensus 216 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 295 (396)
++......|.++++|+.|++..|.+.....-.|.++++|+.|.+..|.+.......|..+.++++|++..|++......+
T Consensus 209 ittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~ 288 (873)
T KOG4194|consen 209 ITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGW 288 (873)
T ss_pred ccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccc
Confidence 99988889999999999999998876543345666777777777766665443445556666666666666554433333
Q ss_pred HhCCCCccEEEcCCCCCCchhHHhhcCCCCCCEEeccCcc------------------------cChhhhHhhhCCCCCC
Q 016017 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG------------------------ISDGSLRKLAGLSSLK 351 (396)
Q Consensus 296 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~------------------------~~~~~~~~l~~~~~L~ 351 (396)
+.++..|+.|+++.|.|....+.....+++|++|+++.|. ++......+..+++|+
T Consensus 289 lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~ 368 (873)
T KOG4194|consen 289 LFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLH 368 (873)
T ss_pred ccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhh
Confidence 4444455555555554444444444444455555555444 4443344444455666
Q ss_pred EeecCCCCCc---HHHHHHHhcCccCCeeecCCCccChHHHHH
Q 016017 352 SLNLDARQIT---DTGLAALTSLTGLTHLDLFGARITDSGAAY 391 (396)
Q Consensus 352 ~L~l~~~~l~---~~~~~~l~~~~~L~~l~l~~~~l~~~~~~~ 391 (396)
+|+|+.|.+. ++....+..+++|++|.+.||++..++-+.
T Consensus 369 ~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krA 411 (873)
T KOG4194|consen 369 KLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRA 411 (873)
T ss_pred hhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhh
Confidence 6666665543 223345555666666666666555444333
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.87 E-value=5.3e-25 Score=193.66 Aligned_cols=317 Identities=22% Similarity=0.210 Sum_probs=133.9
Q ss_pred CCCccEEEeecCCCChHHHHHhhCCCCCCeeeccCCcccChhHHHhhhCCCCCcEEeccCCccccHHHHHHHhCCCCCcE
Q 016017 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135 (396)
Q Consensus 56 ~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 135 (396)
++.++-|.|..+++. ..++.++.+.+|++|.+..+ .+.. ....+..+|.|+.+.+..|..-....|..+-.+..|..
T Consensus 31 Mt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN-~L~~-vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~ 107 (1255)
T KOG0444|consen 31 MTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHN-QLIS-VHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTI 107 (1255)
T ss_pred hhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhh-hhHh-hhhhhccchhhHHHhhhccccccCCCCchhccccccee
Confidence 344444444444432 33444444444444444442 1111 12223344444444444443322222333334444444
Q ss_pred ecccccccccCcccccCCCCcccEEecCCCCCccccccccccCCCCccEEEeecCCCChhHHHhccCCCCCCEEEecCCC
Q 016017 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215 (396)
Q Consensus 136 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 215 (396)
|++++|. ....+..+...+++-.|++++ +.+..+..+.+.++..|-.|++++|.+... +..+..+..|++|.+++|+
T Consensus 108 lDLShNq-L~EvP~~LE~AKn~iVLNLS~-N~IetIPn~lfinLtDLLfLDLS~NrLe~L-PPQ~RRL~~LqtL~Ls~NP 184 (1255)
T KOG0444|consen 108 LDLSHNQ-LREVPTNLEYAKNSIVLNLSY-NNIETIPNSLFINLTDLLFLDLSNNRLEML-PPQIRRLSMLQTLKLSNNP 184 (1255)
T ss_pred eecchhh-hhhcchhhhhhcCcEEEEccc-CccccCCchHHHhhHhHhhhccccchhhhc-CHHHHHHhhhhhhhcCCCh
Confidence 4444432 223333344444444444444 223323333333444444444444444322 2223444444444444444
Q ss_pred CChhhHHHHhcCCCCCEEECCCCCCC-hHHHHhhhcCCCCcEEEccCCcCcHHHHHHhhCCCCCCEEeccCCCCChhHhH
Q 016017 216 VTAACLDSLSALGSLFYLNLNRCQLS-DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294 (396)
Q Consensus 216 ~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 294 (396)
+.......+..+++|+.|.+++.+.+ ...|..+..+.+|..++++.|.+... |..+..+++|+.|++++|.++... .
T Consensus 185 L~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~v-Pecly~l~~LrrLNLS~N~iteL~-~ 262 (1255)
T KOG0444|consen 185 LNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIV-PECLYKLRNLRRLNLSGNKITELN-M 262 (1255)
T ss_pred hhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcc-hHHHhhhhhhheeccCcCceeeee-c
Confidence 33222222222333344444433211 11223334444455555555444322 344445555555555555444221 1
Q ss_pred HHhCCCCccEEEcCCCCCCchhHHhhcCCCCCCEEeccCcccC------------------------hhhhHhhhCCCCC
Q 016017 295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS------------------------DGSLRKLAGLSSL 350 (396)
Q Consensus 295 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~------------------------~~~~~~l~~~~~L 350 (396)
....+.+|++|+++.|+++. .+..+..++.|+.|...+|+++ +..|..++.|+.|
T Consensus 263 ~~~~W~~lEtLNlSrNQLt~-LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL 341 (1255)
T KOG0444|consen 263 TEGEWENLETLNLSRNQLTV-LPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKL 341 (1255)
T ss_pred cHHHHhhhhhhccccchhcc-chHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHH
Confidence 11223345555555554432 2333344445555544444322 1234445555666
Q ss_pred CEeecCCCCCcHHHHHHHhcCccCCeeecCCC
Q 016017 351 KSLNLDARQITDTGLAALTSLTGLTHLDLFGA 382 (396)
Q Consensus 351 ~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~ 382 (396)
+.|.|+.|++... |+++.-++.|+.||+.+|
T Consensus 342 ~kL~L~~NrLiTL-PeaIHlL~~l~vLDlreN 372 (1255)
T KOG0444|consen 342 QKLKLDHNRLITL-PEAIHLLPDLKVLDLREN 372 (1255)
T ss_pred HHhcccccceeec-hhhhhhcCCcceeeccCC
Confidence 6666666655543 455555566666666665
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.87 E-value=1.5e-24 Score=190.90 Aligned_cols=295 Identities=18% Similarity=0.119 Sum_probs=183.0
Q ss_pred cCCCccEEEeecCCCChHHHHHhhCCCCCCeeeccCCcccChhHHHhhhCCCCCcEEeccCCccccHHHHHHHhCCCCCc
Q 016017 55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134 (396)
Q Consensus 55 ~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 134 (396)
++.+|++|.++.|++. .....++.+|.||.+.+..+.--+...|..+.++..|..|++++|.. .+.|..+....++-
T Consensus 53 ~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL--~EvP~~LE~AKn~i 129 (1255)
T KOG0444|consen 53 RLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQL--REVPTNLEYAKNSI 129 (1255)
T ss_pred HHhhhhhhhhhhhhhH-hhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhh--hhcchhhhhhcCcE
Confidence 4567777777777665 34455667777777777665333344455566667777777777653 22344455555666
Q ss_pred EecccccccccCcccccCCCCcccEEecCCCCCccccccccccCCCCccEEEeecCCCChh-------------------
Q 016017 135 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS------------------- 195 (396)
Q Consensus 135 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~------------------- 195 (396)
.|++++|.........+.++..|-.|+++++ .+ +..++.+..+.+|+.|.+++|.+...
T Consensus 130 VLNLS~N~IetIPn~lfinLtDLLfLDLS~N-rL-e~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~T 207 (1255)
T KOG0444|consen 130 VLNLSYNNIETIPNSLFINLTDLLFLDLSNN-RL-EMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNT 207 (1255)
T ss_pred EEEcccCccccCCchHHHhhHhHhhhccccc-hh-hhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccc
Confidence 6666664432222222344444444444431 11 12333333444444444444433322
Q ss_pred ------HHHhccCCCCCCEEEecCCCCChhhHHHHhcCCCCCEEECCCCCCChHHHHhhhcCCCCcEEEccCCcCcHHHH
Q 016017 196 ------GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269 (396)
Q Consensus 196 ------~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 269 (396)
.+..+..+.+|..++++.|.+.. .|..+..+++|+.|++++|.+++.. .....+.+|++|+++.|.++.. |
T Consensus 208 qRTl~N~Ptsld~l~NL~dvDlS~N~Lp~-vPecly~l~~LrrLNLS~N~iteL~-~~~~~W~~lEtLNlSrNQLt~L-P 284 (1255)
T KOG0444|consen 208 QRTLDNIPTSLDDLHNLRDVDLSENNLPI-VPECLYKLRNLRRLNLSGNKITELN-MTEGEWENLETLNLSRNQLTVL-P 284 (1255)
T ss_pred cchhhcCCCchhhhhhhhhccccccCCCc-chHHHhhhhhhheeccCcCceeeee-ccHHHHhhhhhhccccchhccc-h
Confidence 23344445566666666665544 3566667777777777777765433 2234456777777877777643 6
Q ss_pred HHhhCCCCCCEEeccCCCCChh-HhHHHhCCCCccEEEcCCCCCCchhHHhhcCCCCCCEEeccCcccChhhhHhhhCCC
Q 016017 270 VHLKGLTNLESLNLDSCGIGDE-GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 348 (396)
Q Consensus 270 ~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~ 348 (396)
..+..+++|+.|.+.+|.+..+ .|..++++.+|+.+...+|.+. ..+..+..|+.|+.|.++.|.+.. .|..+.-++
T Consensus 285 ~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLiT-LPeaIHlL~ 362 (1255)
T KOG0444|consen 285 DAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLIT-LPEAIHLLP 362 (1255)
T ss_pred HHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhcccccceee-chhhhhhcC
Confidence 6777788888888888776644 3556777778888888887764 346778899999999999997655 677788889
Q ss_pred CCCEeecCCCC
Q 016017 349 SLKSLNLDARQ 359 (396)
Q Consensus 349 ~L~~L~l~~~~ 359 (396)
.|+.|++..|.
T Consensus 363 ~l~vLDlreNp 373 (1255)
T KOG0444|consen 363 DLKVLDLRENP 373 (1255)
T ss_pred CcceeeccCCc
Confidence 99999999864
No 7
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.83 E-value=4.6e-19 Score=155.97 Aligned_cols=273 Identities=26% Similarity=0.272 Sum_probs=135.1
Q ss_pred EeccCCccccHHHHHHHhCCCCCcEecccccccccC----cccccCCCCcccEEecCCCCCcc-----ccccccccCCCC
Q 016017 111 LSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG----GLVNLKGLMKLESLNIKWCNCIT-----DSDMKPLSGLTN 181 (396)
Q Consensus 111 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~-----~~~~~~l~~~~~ 181 (396)
|++..+..........+..+.+|++++++++..... ....+...++++.++++++.... ......+..+++
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~ 82 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG 82 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCc
Confidence 455554433233345556677788888888754322 12234556667777776633221 011223445666
Q ss_pred ccEEEeecCCCChhHHHhccCC---CCCCEEEecCCCCChhh----HHHHhcC-CCCCEEECCCCCCChHH----HHhhh
Q 016017 182 LKSLQISCSKVTDSGIAYLKGL---QKLTLLNLEGCPVTAAC----LDSLSAL-GSLFYLNLNRCQLSDDG----CEKFS 249 (396)
Q Consensus 182 L~~L~l~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~~~----~~~~~~~-~~L~~L~l~~~~~~~~~----~~~l~ 249 (396)
|++|+++++.+.......+..+ ++|+.|++++|.+.... ...+..+ ++|+.+++++|.+.... ...+.
T Consensus 83 L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~ 162 (319)
T cd00116 83 LQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALR 162 (319)
T ss_pred eeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHH
Confidence 7777776666654333333222 33666666666554321 1223344 56666666666655222 22334
Q ss_pred cCCCCcEEEccCCcCcHH----HHHHhhCCCCCCEEeccCCCCChhHhH----HHhCCCCccEEEcCCCCCCchhHHhhc
Q 016017 250 KIGSLKVLNLGFNEITDE----CLVHLKGLTNLESLNLDSCGIGDEGLV----NLTGLCNLKCLELSDTQVGSSGLRHLS 321 (396)
Q Consensus 250 ~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~~~l~ 321 (396)
.+++|+.|++++|.+.+. ....+...++|+.|++++|.+.+.... .+..+++|++|++++|.+++.....+.
T Consensus 163 ~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~ 242 (319)
T cd00116 163 ANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALA 242 (319)
T ss_pred hCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHH
Confidence 455566666666555421 112233445666666666655433222 233445566666666655543333321
Q ss_pred -----CCCCCCEEeccCcccChhhh----HhhhCCCCCCEeecCCCCCcHHHHHHH----hcC-ccCCeeecCCCc
Q 016017 322 -----GLTNLESINLSFTGISDGSL----RKLAGLSSLKSLNLDARQITDTGLAAL----TSL-TGLTHLDLFGAR 383 (396)
Q Consensus 322 -----~~~~L~~L~l~~~~~~~~~~----~~l~~~~~L~~L~l~~~~l~~~~~~~l----~~~-~~L~~l~l~~~~ 383 (396)
..+.|++|++++|.+++... ..+..+++|+.+++++|.+++.+...+ ... +.|+++++.+++
T Consensus 243 ~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 243 SALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred HHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 12456666666665543222 222334556666666665554433222 222 455555555553
No 8
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.83 E-value=8.1e-20 Score=184.09 Aligned_cols=287 Identities=21% Similarity=0.197 Sum_probs=149.6
Q ss_pred CCCeeeccCCcccChhHHHhhhCCCCCcEEeccCCccccHHHHHHHhCCCCCcEecccccccccCcccccCCCCcccEEe
Q 016017 82 NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161 (396)
Q Consensus 82 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 161 (396)
+|++|++.++ .+.. .+..+..+++|++|+++++..+... ..++.+++|++|++++|......+..+..+++|+.|+
T Consensus 612 ~L~~L~L~~s-~l~~-L~~~~~~l~~Lk~L~Ls~~~~l~~i--p~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~ 687 (1153)
T PLN03210 612 NLVKLQMQGS-KLEK-LWDGVHSLTGLRNIDLRGSKNLKEI--PDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLD 687 (1153)
T ss_pred CCcEEECcCc-cccc-cccccccCCCCCEEECCCCCCcCcC--CccccCCcccEEEecCCCCccccchhhhccCCCCEEe
Confidence 4555555443 2221 2233345555666666554332221 1244555666666665555555555555555666666
Q ss_pred cCCCCCccccccccccCCCCccEEEeecCCCChhHHHhccCCCCCCEEEecCCCCChhhHHHHhcCCCCCEEECCCCCCC
Q 016017 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241 (396)
Q Consensus 162 l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 241 (396)
+++|..++... ..+ ++++|+.|++++|......+ ....+|+.|+++++.+... +..+ .+++|+.|.+.++...
T Consensus 688 L~~c~~L~~Lp-~~i-~l~sL~~L~Lsgc~~L~~~p---~~~~nL~~L~L~~n~i~~l-P~~~-~l~~L~~L~l~~~~~~ 760 (1153)
T PLN03210 688 MSRCENLEILP-TGI-NLKSLYRLNLSGCSRLKSFP---DISTNISWLDLDETAIEEF-PSNL-RLENLDELILCEMKSE 760 (1153)
T ss_pred CCCCCCcCccC-CcC-CCCCCCEEeCCCCCCccccc---cccCCcCeeecCCCccccc-cccc-cccccccccccccchh
Confidence 65554443321 111 45555666655553222111 1124555555555544321 2111 3455555555442211
Q ss_pred h-------HHHHhhhcCCCCcEEEccCCcCcHHHHHHhhCCCCCCEEeccCCCCChhHhHHHhCCCCccEEEcCCCCCCc
Q 016017 242 D-------DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 314 (396)
Q Consensus 242 ~-------~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 314 (396)
. ..+.....+++|+.|++++|......|..++++++|+.|++.+|......+..+ .+++|+.|++++|..-.
T Consensus 761 ~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~ 839 (1153)
T PLN03210 761 KLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLR 839 (1153)
T ss_pred hccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccc
Confidence 0 001111224567777777765444456667777778888777764332223222 46677777777764321
Q ss_pred hhHHhhcCCCCCCEEeccCcccChhhhHhhhCCCCCCEeecCCC-CCcHHHHHHHhcCccCCeeecCCC-ccC
Q 016017 315 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR-QITDTGLAALTSLTGLTHLDLFGA-RIT 385 (396)
Q Consensus 315 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~-~l~~~~~~~l~~~~~L~~l~l~~~-~l~ 385 (396)
..+ ...++|++|++++|.++. .+..+..+++|+.|++.+| .+.. .+..+..+++|+.+++++| .++
T Consensus 840 ~~p---~~~~nL~~L~Ls~n~i~~-iP~si~~l~~L~~L~L~~C~~L~~-l~~~~~~L~~L~~L~l~~C~~L~ 907 (1153)
T PLN03210 840 TFP---DISTNISDLNLSRTGIEE-VPWWIEKFSNLSFLDMNGCNNLQR-VSLNISKLKHLETVDFSDCGALT 907 (1153)
T ss_pred ccc---ccccccCEeECCCCCCcc-ChHHHhcCCCCCEEECCCCCCcCc-cCcccccccCCCeeecCCCcccc
Confidence 111 123577788888877765 4666777888888888775 3443 3445566777778888877 443
No 9
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.82 E-value=1.2e-18 Score=153.24 Aligned_cols=260 Identities=26% Similarity=0.233 Sum_probs=148.5
Q ss_pred HHhhhCCCCCcEEeccCCccccHH---HHHHHhCCCCCcEeccccccccc--C----cccccCCCCcccEEecCCCCCcc
Q 016017 99 LEHLRGLSNLTSLSFRRNNAITAQ---GMKAFAGLINLVKLDLERCTRIH--G----GLVNLKGLMKLESLNIKWCNCIT 169 (396)
Q Consensus 99 ~~~l~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~--~----~~~~l~~~~~L~~L~l~~~~~~~ 169 (396)
...+..+.+|++++++++...... ....+...+.+++++++++.... . ....+..+++|+.|+++++....
T Consensus 16 ~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 95 (319)
T cd00116 16 TELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGP 95 (319)
T ss_pred HHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCCh
Confidence 344455666777777777632211 12234456667777777654321 1 11234556777777777644322
Q ss_pred ccccccccCC---CCccEEEeecCCCChhHH----HhccCC-CCCCEEEecCCCCChh----hHHHHhcCCCCCEEECCC
Q 016017 170 DSDMKPLSGL---TNLKSLQISCSKVTDSGI----AYLKGL-QKLTLLNLEGCPVTAA----CLDSLSALGSLFYLNLNR 237 (396)
Q Consensus 170 ~~~~~~l~~~---~~L~~L~l~~~~~~~~~~----~~~~~~-~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~ 237 (396)
.....+..+ ++|++|++++|.+.+... ..+..+ ++|+.|++++|.+... ....+..+++|+.|++++
T Consensus 96 -~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~ 174 (319)
T cd00116 96 -DGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLAN 174 (319)
T ss_pred -hHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcC
Confidence 222233322 347777777777664222 233444 6777777777766532 233445566777777777
Q ss_pred CCCChHHH----HhhhcCCCCcEEEccCCcCcHHH----HHHhhCCCCCCEEeccCCCCChhHhHHHhC-----CCCccE
Q 016017 238 CQLSDDGC----EKFSKIGSLKVLNLGFNEITDEC----LVHLKGLTNLESLNLDSCGIGDEGLVNLTG-----LCNLKC 304 (396)
Q Consensus 238 ~~~~~~~~----~~l~~~~~L~~L~l~~~~~~~~~----~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~ 304 (396)
|.+.+... ..+..+++|+.|++++|.+.+.. ...+..+++|+.|++++|.+.+.....+.. .+.|++
T Consensus 175 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~ 254 (319)
T cd00116 175 NGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLT 254 (319)
T ss_pred CCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceE
Confidence 77664322 23344567777777777665332 233455677777777777776544433322 257777
Q ss_pred EEcCCCCCCchhHH----hhcCCCCCCEEeccCcccChhhhHhhh----CC-CCCCEeecCCCC
Q 016017 305 LELSDTQVGSSGLR----HLSGLTNLESINLSFTGISDGSLRKLA----GL-SSLKSLNLDARQ 359 (396)
Q Consensus 305 L~l~~~~~~~~~~~----~l~~~~~L~~L~l~~~~~~~~~~~~l~----~~-~~L~~L~l~~~~ 359 (396)
|++.+|.+++.+.. .+..+++|+++++++|.+++.....+. .. +.|+.+++.+++
T Consensus 255 L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 255 LSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred EEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 77777777644332 234557777777777777765333332 23 577777776654
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.79 E-value=1.4e-18 Score=175.14 Aligned_cols=287 Identities=17% Similarity=0.152 Sum_probs=206.2
Q ss_pred CCCccEEEeecCCCChHHHHHhhCCCCCCeeeccCCcccChhHHHhhhCCCCCcEEeccCCccccHHHHHHHhCCCCCcE
Q 016017 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135 (396)
Q Consensus 56 ~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 135 (396)
+.+|+.|++.++.+. ..+..+..+++|+.|+++++..+... ..+..+++|++|++++|.... ..+..+..+++|+.
T Consensus 610 ~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~i--p~ls~l~~Le~L~L~~c~~L~-~lp~si~~L~~L~~ 685 (1153)
T PLN03210 610 PENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEI--PDLSMATNLETLKLSDCSSLV-ELPSSIQYLNKLED 685 (1153)
T ss_pred ccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcC--CccccCCcccEEEecCCCCcc-ccchhhhccCCCCE
Confidence 468888888888776 35566778999999999987544432 247788999999999987543 34567889999999
Q ss_pred ecccccccccCcccccCCCCcccEEecCCCCCccccccccccCCCCccEEEeecCCCChhHHHhccCCCCCCEEEecCCC
Q 016017 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215 (396)
Q Consensus 136 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 215 (396)
|++++|......+..+ ++++|+.|++++|..+... +. ...+|++|+++++.+...+ .. ..+++|+.|.+.++.
T Consensus 686 L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~-p~---~~~nL~~L~L~~n~i~~lP-~~-~~l~~L~~L~l~~~~ 758 (1153)
T PLN03210 686 LDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSF-PD---ISTNISWLDLDETAIEEFP-SN-LRLENLDELILCEMK 758 (1153)
T ss_pred EeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccc-cc---ccCCcCeeecCCCcccccc-cc-ccccccccccccccc
Confidence 9999998776666544 7899999999998654432 11 2468999999998876432 22 246788888777643
Q ss_pred CCh-------hhHHHHhcCCCCCEEECCCCCCChHHHHhhhcCCCCcEEEccCCcCcHHHHHHhhCCCCCCEEeccCCCC
Q 016017 216 VTA-------ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 288 (396)
Q Consensus 216 ~~~-------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 288 (396)
... ..+......++|+.|++++|......+..++.+++|+.|++++|......|..+ .+++|+.|++++|..
T Consensus 759 ~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~ 837 (1153)
T PLN03210 759 SEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSR 837 (1153)
T ss_pred hhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCc
Confidence 211 111122345789999999887666666778889999999998875433334333 678999999999854
Q ss_pred ChhHhHHHhCCCCccEEEcCCCCCCchhHHhhcCCCCCCEEeccCc-ccChhhhHhhhCCCCCCEeecCCCC
Q 016017 289 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT-GISDGSLRKLAGLSSLKSLNLDARQ 359 (396)
Q Consensus 289 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~~~ 359 (396)
....+. ...+|+.|++++|.++.. +..+..+++|+.|++++| .+.. .+..+..+++|+.+++.+|.
T Consensus 838 L~~~p~---~~~nL~~L~Ls~n~i~~i-P~si~~l~~L~~L~L~~C~~L~~-l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 838 LRTFPD---ISTNISDLNLSRTGIEEV-PWWIEKFSNLSFLDMNGCNNLQR-VSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred cccccc---cccccCEeECCCCCCccC-hHHHhcCCCCCEEECCCCCCcCc-cCcccccccCCCeeecCCCc
Confidence 332222 235889999999988753 556778899999999987 4443 45556677888888888874
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.78 E-value=3.2e-21 Score=161.13 Aligned_cols=52 Identities=23% Similarity=0.335 Sum_probs=43.3
Q ss_pred CcccChhhhHhhhCCCCCCEeecCCCCCcHHHHHHHhcCccCCeeecCCCccC
Q 016017 333 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385 (396)
Q Consensus 333 ~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~l~ 385 (396)
++++....+..+.++.+|.+|++.+|.+..+ |..++++.+|++|++.||+|.
T Consensus 490 ~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~I-Pp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 490 NNQIGSVDPSGLKNMRNLTTLDLQNNDLQQI-PPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred cccccccChHHhhhhhhcceeccCCCchhhC-ChhhccccceeEEEecCCccC
Confidence 3445555555677889999999999998876 678999999999999999887
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.75 E-value=3.8e-20 Score=169.92 Aligned_cols=181 Identities=23% Similarity=0.267 Sum_probs=78.4
Q ss_pred CCCEEEecCCCCChhhHHHHhcCCCCCEEECCCCCCChHHHHhhhcCCCCcEEEccCCcCcHHHHHHhhCCCCCCEEecc
Q 016017 205 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284 (396)
Q Consensus 205 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 284 (396)
+|+.++++.+.+... +.++..+++|+.++...|.+.. .+..+....+|+.+.+..|.+... +...++...|++|++.
T Consensus 242 nl~~~dis~n~l~~l-p~wi~~~~nle~l~~n~N~l~~-lp~ri~~~~~L~~l~~~~nel~yi-p~~le~~~sL~tLdL~ 318 (1081)
T KOG0618|consen 242 NLQYLDISHNNLSNL-PEWIGACANLEALNANHNRLVA-LPLRISRITSLVSLSAAYNELEYI-PPFLEGLKSLRTLDLQ 318 (1081)
T ss_pred cceeeecchhhhhcc-hHHHHhcccceEecccchhHHh-hHHHHhhhhhHHHHHhhhhhhhhC-CCcccccceeeeeeeh
Confidence 444444444444332 2444445555555544444422 122333334444444444433322 2233345556666666
Q ss_pred CCCCChhHhHHHhCCC-CccEEEcCCCCCCchhHHhhcCCCCCCEEeccCcccChhhhHhhhCCCCCCEeecCCCCCcHH
Q 016017 285 SCGIGDEGLVNLTGLC-NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 363 (396)
Q Consensus 285 ~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~ 363 (396)
.|.+...+...+.... .|+.|+.+.+.+.......=...+.|+.|.+.+|.+++.....+.++++||.|+|++|++...
T Consensus 319 ~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~f 398 (1081)
T KOG0618|consen 319 SNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSF 398 (1081)
T ss_pred hccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccC
Confidence 5554432221111111 122222222211111000001234455555555555555555555555666666666555555
Q ss_pred HHHHHhcCccCCeeecCCCccChHH
Q 016017 364 GLAALTSLTGLTHLDLFGARITDSG 388 (396)
Q Consensus 364 ~~~~l~~~~~L~~l~l~~~~l~~~~ 388 (396)
....+.+++.|++|+++||+++..+
T Consensus 399 pas~~~kle~LeeL~LSGNkL~~Lp 423 (1081)
T KOG0618|consen 399 PASKLRKLEELEELNLSGNKLTTLP 423 (1081)
T ss_pred CHHHHhchHHhHHHhcccchhhhhh
Confidence 4455555555566666665555443
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.73 E-value=3.2e-20 Score=155.20 Aligned_cols=108 Identities=25% Similarity=0.295 Sum_probs=63.1
Q ss_pred CCCcEEEccCCcCcHHHHHHhhCCCCCCEEeccCCCCChhHhHHHhCCCCccEEEcCCCCCCchhHHhhcCCCCCCEEec
Q 016017 252 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 331 (396)
Q Consensus 252 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 331 (396)
++|..|++++|.+.+. |..++....|+.++++.|++.. .|..+.....++.+-.+++++....+..+.++.+|..||+
T Consensus 435 ~kLt~L~L~NN~Ln~L-P~e~~~lv~Lq~LnlS~NrFr~-lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL 512 (565)
T KOG0472|consen 435 QKLTFLDLSNNLLNDL-PEEMGSLVRLQTLNLSFNRFRM-LPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDL 512 (565)
T ss_pred hcceeeecccchhhhc-chhhhhhhhhheeccccccccc-chHHHhhHHHHHHHHhccccccccChHHhhhhhhcceecc
Confidence 3444444444433322 3333333344444444443321 1222222233333334444444444555678899999999
Q ss_pred cCcccChhhhHhhhCCCCCCEeecCCCCCcH
Q 016017 332 SFTGISDGSLRKLAGLSSLKSLNLDARQITD 362 (396)
Q Consensus 332 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~ 362 (396)
.+|.+.. +|..+++|.+|++|++.||.+..
T Consensus 513 ~nNdlq~-IPp~LgnmtnL~hLeL~gNpfr~ 542 (565)
T KOG0472|consen 513 QNNDLQQ-IPPILGNMTNLRHLELDGNPFRQ 542 (565)
T ss_pred CCCchhh-CChhhccccceeEEEecCCccCC
Confidence 9998876 68889999999999999999884
No 14
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.71 E-value=9.1e-18 Score=141.35 Aligned_cols=358 Identities=25% Similarity=0.358 Sum_probs=208.0
Q ss_pred CCcHHHHHHHHHHhHhccccCchh----hc--ccccCceeEeccCCCC-CCCchHHHHHHhcC-CCccEEEeecC-CCCh
Q 016017 1 MLPRDISQQIFNELVYSRCLTEVS----LE--AFRDCALQDLCLGQYP-GVNDKWMDVIASQG-SSLLSVDLSGS-DVTD 71 (396)
Q Consensus 1 ~~p~~~~~~~~~~l~~~~~~~~~~----~~--~~~~~~l~~l~l~~~~-~~~~~~~~~~~~~~-~~l~~L~l~~~-~~~~ 71 (396)
.+|+|+.-++|..|=-+..-+-.- ++ ++....-+.+++...+ .+....++....++ ..++.|.+++. .+.+
T Consensus 74 ~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rDv~g~VV~~~~~Rcgg~lk~LSlrG~r~v~~ 153 (483)
T KOG4341|consen 74 SLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRDVDGGVVENMISRCGGFLKELSLRGCRAVGD 153 (483)
T ss_pred cCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcchhcCCCcceehHhhhhccccccccccccccCCc
Confidence 378999999998775544333110 00 1111122333333222 11112222222222 46667777765 3344
Q ss_pred HHHHHh-hCCCCCCeeeccCCcccChhHHHhhh-CCCCCcEEeccCCccccHHHHHHH-hCCCCCcEecccccccccCc-
Q 016017 72 SGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLR-GLSNLTSLSFRRNNAITAQGMKAF-AGLINLVKLDLERCTRIHGG- 147 (396)
Q Consensus 72 ~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~- 147 (396)
.....+ .+||++++|.+.+|..+++.....++ .|++|++|++..|..++....+.+ ..|++|++++++.|+-....
T Consensus 154 sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~g 233 (483)
T KOG4341|consen 154 SSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNG 233 (483)
T ss_pred chhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCc
Confidence 444444 46777777777777666666555553 566777777777665555555533 35777777777776544331
Q ss_pred cc-ccCCCCcccEEecCCCCCcccccccccc-CCCCccEEEeecC-CCChhHHHhc-cCCCCCCEEEecCC-CCChhhHH
Q 016017 148 LV-NLKGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKSLQISCS-KVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLD 222 (396)
Q Consensus 148 ~~-~l~~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~-~~~~~~~~~~-~~~~~L~~L~l~~~-~~~~~~~~ 222 (396)
.. ....++.++.+..++|...+........ .++.+..+++..| .+++.....+ ..+..|+.++.+++ .+......
T Consensus 234 v~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~ 313 (483)
T KOG4341|consen 234 VQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLW 313 (483)
T ss_pred chHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHH
Confidence 11 1345555666666666544433222222 3445555555444 3554443333 44567788887776 44333333
Q ss_pred HH-hcCCCCCEEECCCCC-CChHHHHhhh-cCCCCcEEEccCCcCcHHH--HHHhhCCCCCCEEeccCCC-CChhHhHHH
Q 016017 223 SL-SALGSLFYLNLNRCQ-LSDDGCEKFS-KIGSLKVLNLGFNEITDEC--LVHLKGLTNLESLNLDSCG-IGDEGLVNL 296 (396)
Q Consensus 223 ~~-~~~~~L~~L~l~~~~-~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~--~~~l~~~~~L~~L~l~~~~-~~~~~~~~~ 296 (396)
.+ .++++|+.+.+.+|. +++.....++ +++.|+.+++..+...... ...-.+++.|+.+.+++|. +++++...+
T Consensus 314 aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l 393 (483)
T KOG4341|consen 314 ALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHL 393 (483)
T ss_pred HHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhh
Confidence 33 357888888888775 4444444444 4678888888777543221 2222477899999998884 455544444
Q ss_pred h----CCCCccEEEcCCCC-CCchhHHhhcCCCCCCEEeccCc-ccChhhhHhhh-CCCCCCEeecCCC
Q 016017 297 T----GLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSFT-GISDGSLRKLA-GLSSLKSLNLDAR 358 (396)
Q Consensus 297 ~----~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~l~-~~~~L~~L~l~~~ 358 (396)
. .+..|+.+.+++++ +++.....+..|++|+.+++-+| .++......+. .+|+++...+...
T Consensus 394 ~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~~a~ 462 (483)
T KOG4341|consen 394 SSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAYFAP 462 (483)
T ss_pred hhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhhccC
Confidence 3 35688999999996 46667788899999999999988 66666666665 6888887776653
No 15
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.70 E-value=8.4e-18 Score=141.56 Aligned_cols=340 Identities=26% Similarity=0.392 Sum_probs=208.0
Q ss_pred eeEeccCCCCCCCchHHHHHHhcCCCccEEEeecCCC--ChHHHHHh-hCC-CCCCeeeccCCcccChhHHHhh-hCCCC
Q 016017 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDV--TDSGLIHL-KDC-SNLQSLDFNFCIQISDGGLEHL-RGLSN 107 (396)
Q Consensus 33 l~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~--~~~~~~~l-~~~-~~L~~L~l~~~~~~~~~~~~~l-~~~~~ 107 (396)
+....+..|..+...|.. .+.-....+++++...+. .+.+.+.+ .++ ..||.|.+++|..........+ ..+|+
T Consensus 87 LDtksl~r~a~~c~~~n~-~AlD~~~~q~idL~t~~rDv~g~VV~~~~~Rcgg~lk~LSlrG~r~v~~sslrt~~~~Cpn 165 (483)
T KOG4341|consen 87 LDTKSLCRAAQCCTMWNK-LALDGSCWQHIDLFTFQRDVDGGVVENMISRCGGFLKELSLRGCRAVGDSSLRTFASNCPN 165 (483)
T ss_pred HhHHHHHHHHHHHHHhhh-hhhccccceeeehhcchhcCCCcceehHhhhhccccccccccccccCCcchhhHHhhhCCc
Confidence 455556666666666654 444568899999986543 33333333 344 4789999999877666655544 57899
Q ss_pred CcEEeccCCccccHHHHHHHh-CCCCCcEecccccccccCcccc--cCCCCcccEEecCCCCCccccccccccCCCCccE
Q 016017 108 LTSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRIHGGLVN--LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184 (396)
Q Consensus 108 L~~L~l~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~--l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~ 184 (396)
+++|.+.+|..+++.....++ .|++|++|++..|.......-. -..+++|+.++++.|+.+.+.....
T Consensus 166 IehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~--------- 236 (483)
T KOG4341|consen 166 IEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQA--------- 236 (483)
T ss_pred hhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchH---------
Confidence 999999998887777666665 5888888888876544332211 1334555555555544444322222
Q ss_pred EEeecCCCChhHHHhccCCCCCCEEEecCCC-CChhhHHHH-hcCCCCCEEECCCCC-CChHHHHh-hhcCCCCcEEEcc
Q 016017 185 LQISCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSL-SALGSLFYLNLNRCQ-LSDDGCEK-FSKIGSLKVLNLG 260 (396)
Q Consensus 185 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~-~~~~~L~~L~l~~~~-~~~~~~~~-l~~~~~L~~L~l~ 260 (396)
...+++.++.+...+|. ........+ ..++.+-.+++..|. +++..... -..+..|+.+..+
T Consensus 237 --------------~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s 302 (483)
T KOG4341|consen 237 --------------LQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYS 302 (483)
T ss_pred --------------HhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhccc
Confidence 12334445555444542 211111111 233445555544443 33333222 2346677777777
Q ss_pred CCcC-cHHHHHHh-hCCCCCCEEeccCCC-CChhHhHHHh-CCCCccEEEcCCCCCCchh-HHhh-cCCCCCCEEeccCc
Q 016017 261 FNEI-TDECLVHL-KGLTNLESLNLDSCG-IGDEGLVNLT-GLCNLKCLELSDTQVGSSG-LRHL-SGLTNLESINLSFT 334 (396)
Q Consensus 261 ~~~~-~~~~~~~l-~~~~~L~~L~l~~~~-~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~-~~~l-~~~~~L~~L~l~~~ 334 (396)
++.. .+.....+ .++++|+.+.+.+|+ +++.....++ +++.|+.+++..+...... ...+ .+|+.|+.+.+++|
T Consensus 303 ~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshc 382 (483)
T KOG4341|consen 303 SCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHC 382 (483)
T ss_pred CCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhh
Confidence 6543 33222333 366788888888874 4554444444 5778888888887543222 3333 57889999999888
Q ss_pred -ccChhhhHhhh----CCCCCCEeecCCCC-CcHHHHHHHhcCccCCeeecCCC-ccChHHHHHHHhcC
Q 016017 335 -GISDGSLRKLA----GLSSLKSLNLDARQ-ITDTGLAALTSLTGLTHLDLFGA-RITDSGAAYLRSKF 396 (396)
Q Consensus 335 -~~~~~~~~~l~----~~~~L~~L~l~~~~-l~~~~~~~l~~~~~L~~l~l~~~-~l~~~~~~~l~~~~ 396 (396)
.+++.+...+. .+..|+.+.+++++ +++...+.+..+++|+.+++.+| .++..+++.++.++
T Consensus 383 e~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~l 451 (483)
T KOG4341|consen 383 ELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHL 451 (483)
T ss_pred hhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhC
Confidence 55665444443 35788899998875 45666688888999999999998 88888888887653
No 16
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.68 E-value=6.5e-19 Score=147.10 Aligned_cols=130 Identities=25% Similarity=0.269 Sum_probs=72.8
Q ss_pred CCCeeeccCCcccChhHHHhhhCCCCCcEEeccCCccccHHHHHHHhCCCCCcEecccccccccCccc-ccCCCCcccEE
Q 016017 82 NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLV-NLKGLMKLESL 160 (396)
Q Consensus 82 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~l~~~~~L~~L 160 (396)
.-..+.|..+ .+....+.+|+.+++|+.|+++.|. +....+.+|..++.+.+|.+.++..+...+. .|..+..++.|
T Consensus 68 ~tveirLdqN-~I~~iP~~aF~~l~~LRrLdLS~N~-Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrL 145 (498)
T KOG4237|consen 68 ETVEIRLDQN-QISSIPPGAFKTLHRLRRLDLSKNN-ISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRL 145 (498)
T ss_pred cceEEEeccC-CcccCChhhccchhhhceecccccc-hhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHH
Confidence 4556666654 5666666777777777777777776 5666667777777776666665433333332 35555555555
Q ss_pred ecCCCCCccccccccccCCCCccEEEeecCCCChhHHHhccCCCCCCEEEecCC
Q 016017 161 NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 214 (396)
Q Consensus 161 ~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 214 (396)
.+.- ..+.-.....+..++++..|.+.+|.+.......+..+..++.+.+..+
T Consensus 146 llNa-n~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~n 198 (498)
T KOG4237|consen 146 LLNA-NHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQN 198 (498)
T ss_pred hcCh-hhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcC
Confidence 5544 2222233444555555555555555544443334444444554444433
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.67 E-value=4.7e-18 Score=156.36 Aligned_cols=305 Identities=21% Similarity=0.218 Sum_probs=184.6
Q ss_pred ccEEEeecCCCChHHHHHhhCCCCCCeeeccCCcccChhHHHhhhCCCCCcEEeccCCccccHHHHHHHhCCCCCcEecc
Q 016017 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL 138 (396)
Q Consensus 59 l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 138 (396)
++.+++..+.+.+..+..+..+.+ .|+++++ .+. ...+..+++|+.|....+..... .-.-++++.|+.
T Consensus 158 ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N-~~~---~~dls~~~~l~~l~c~rn~ls~l-----~~~g~~l~~L~a 226 (1081)
T KOG0618|consen 158 IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYN-EME---VLDLSNLANLEVLHCERNQLSEL-----EISGPSLTALYA 226 (1081)
T ss_pred chhhhhhhhhcccchhcchhhhhe--eeecccc-hhh---hhhhhhccchhhhhhhhcccceE-----EecCcchheeee
Confidence 455555555544444433333333 3555553 222 12234455555555554432110 113355556666
Q ss_pred cccccccCcccccCCCCcccEEecCCCCCccccccccccCCCCccEEEeecCCCChhHHHhccCCCCCCEEEecCCCCCh
Q 016017 139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218 (396)
Q Consensus 139 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 218 (396)
.+|...... ......+|+.++++. +.+.. .+..+..+++|+.+...+|.++.. +..+....+|+.+.+..|.+..
T Consensus 227 ~~n~l~~~~--~~p~p~nl~~~dis~-n~l~~-lp~wi~~~~nle~l~~n~N~l~~l-p~ri~~~~~L~~l~~~~nel~y 301 (1081)
T KOG0618|consen 227 DHNPLTTLD--VHPVPLNLQYLDISH-NNLSN-LPEWIGACANLEALNANHNRLVAL-PLRISRITSLVSLSAAYNELEY 301 (1081)
T ss_pred ccCcceeec--cccccccceeeecch-hhhhc-chHHHHhcccceEecccchhHHhh-HHHHhhhhhHHHHHhhhhhhhh
Confidence 555433111 112234566666665 33333 236666677777777776666432 3333334445544444444433
Q ss_pred hhHHHHhcCCCCCEEECCCCCCChHHHHhh-------------------------hcCCCCcEEEccCCcCcHHHHHHhh
Q 016017 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKF-------------------------SKIGSLKVLNLGFNEITDECLVHLK 273 (396)
Q Consensus 219 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l-------------------------~~~~~L~~L~l~~~~~~~~~~~~l~ 273 (396)
. +.......+|+.|++..|.+.......+ ...+.|+.|.+.+|.+++.+...+.
T Consensus 302 i-p~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~ 380 (1081)
T KOG0618|consen 302 I-PPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLV 380 (1081)
T ss_pred C-CCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhc
Confidence 2 2233345566666666655432211111 1234577788888888887777888
Q ss_pred CCCCCCEEeccCCCCChhHhHHHhCCCCccEEEcCCCCCCchhHHhhcCCCCCCEEeccCcccChhhhHhhhCCCCCCEe
Q 016017 274 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353 (396)
Q Consensus 274 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 353 (396)
++++|+.|+++.|++...+...+.++..|+.|+++||.++... ..+..|+.|++|....|.+.. .| .+.+++.|+.+
T Consensus 381 ~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp-~tva~~~~L~tL~ahsN~l~~-fP-e~~~l~qL~~l 457 (1081)
T KOG0618|consen 381 NFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLP-DTVANLGRLHTLRAHSNQLLS-FP-ELAQLPQLKVL 457 (1081)
T ss_pred cccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhh-HHHHhhhhhHHHhhcCCceee-ch-hhhhcCcceEE
Confidence 9999999999999888777777888899999999999887654 666788999999888887765 23 67889999999
Q ss_pred ecCCCCCcHHHHHHHhcCccCCeeecCCCc
Q 016017 354 NLDARQITDTGLAALTSLTGLTHLDLFGAR 383 (396)
Q Consensus 354 ~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~ 383 (396)
|++.|.++......-..-|+|++||++||.
T Consensus 458 DlS~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 458 DLSCNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred ecccchhhhhhhhhhCCCcccceeeccCCc
Confidence 999999887654443344899999999995
No 18
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.65 E-value=8.2e-18 Score=140.59 Aligned_cols=256 Identities=23% Similarity=0.201 Sum_probs=171.4
Q ss_pred cCCCccEEEeecCCCChHHHHHhhCCCCCCeeeccCCcccChhHHHhhhCCCCCcEEeccCCccccHHHHHHHhCCCCCc
Q 016017 55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134 (396)
Q Consensus 55 ~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 134 (396)
-++.-..|.|..|+|+.....+|+.+++||+|+|+.+ .+....+.+|.++++|..|-+.++..+.......|.++..++
T Consensus 65 LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N-~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slq 143 (498)
T KOG4237|consen 65 LPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKN-NISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQ 143 (498)
T ss_pred CCCcceEEEeccCCcccCChhhccchhhhceeccccc-chhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHH
Confidence 4568889999999999888899999999999999996 788889999999999999988885557777778888888888
Q ss_pred EecccccccccCcccccCCCCcccEEecCCCCCccccccccccCCCCccEEEeecCCCCh------------hHHHhccC
Q 016017 135 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD------------SGIAYLKG 202 (396)
Q Consensus 135 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~------------~~~~~~~~ 202 (396)
-|.+.-|...-.....+..++++..|.+.+ +.+.......+..+..++.+.+..+.+.. ..+..++.
T Consensus 144 rLllNan~i~Cir~~al~dL~~l~lLslyD-n~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsg 222 (498)
T KOG4237|consen 144 RLLLNANHINCIRQDALRDLPSLSLLSLYD-NKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSG 222 (498)
T ss_pred HHhcChhhhcchhHHHHHHhhhcchhcccc-hhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccc
Confidence 888776654444445678888888888887 44444444456666777777666543110 00001111
Q ss_pred CC----------------------CCCEE--Ee-cCC-CCChhhHHHHhcCCCCCEEECCCCCCChHHHHhhhcCCCCcE
Q 016017 203 LQ----------------------KLTLL--NL-EGC-PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 256 (396)
Q Consensus 203 ~~----------------------~L~~L--~l-~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 256 (396)
.. .++.+ .+ +.+ .........|..+++|+++++++|.++......|.+...++.
T Consensus 223 arc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~e 302 (498)
T KOG4237|consen 223 ARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQE 302 (498)
T ss_pred ceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhh
Confidence 00 01111 01 111 111112234566777777777777776666666677777777
Q ss_pred EEccCCcCcHHHHHHhhCCCCCCEEeccCCCCChhHhHHHhCCCCccEEEcCCCCC
Q 016017 257 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 312 (396)
Q Consensus 257 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 312 (396)
|.+..|++.......|.++.+|++|++.+|+++...+.+|.....|.+|.+-.|.+
T Consensus 303 L~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 303 LYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred hhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence 77777766655555666777777777777777666666666666777777766544
No 19
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.65 E-value=1.1e-15 Score=126.22 Aligned_cols=195 Identities=27% Similarity=0.324 Sum_probs=132.2
Q ss_pred cCCCCCCEEEecCCCCChh----hHHHHhcCCCCCEEECCCCCCChHHHHh-------------hhcCCCCcEEEccCCc
Q 016017 201 KGLQKLTLLNLEGCPVTAA----CLDSLSALGSLFYLNLNRCQLSDDGCEK-------------FSKIGSLKVLNLGFNE 263 (396)
Q Consensus 201 ~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~-------------l~~~~~L~~L~l~~~~ 263 (396)
..+++|+.+++|+|-+... ....+..+.+|++|.+.+|.+....... .+.-+.|+++...+|.
T Consensus 89 ~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr 168 (382)
T KOG1909|consen 89 LGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR 168 (382)
T ss_pred hcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc
Confidence 4455666666666644332 2233455677777777777766544332 2335678888888886
Q ss_pred CcHH----HHHHhhCCCCCCEEeccCCCCChhHh----HHHhCCCCccEEEcCCCCCCchhHHhh----cCCCCCCEEec
Q 016017 264 ITDE----CLVHLKGLTNLESLNLDSCGIGDEGL----VNLTGLCNLKCLELSDTQVGSSGLRHL----SGLTNLESINL 331 (396)
Q Consensus 264 ~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~l----~~~~~L~~L~l 331 (396)
+.+. ....+...+.|+.+.+..|.+...+. ..+..+++|+.|++.+|.++..+...+ ..+++|+.|++
T Consensus 169 len~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l 248 (382)
T KOG1909|consen 169 LENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNL 248 (382)
T ss_pred cccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecc
Confidence 6432 23445677888888888887764433 456678899999999988876665444 57788999999
Q ss_pred cCcccChhhhHhhh-----CCCCCCEeecCCCCCcHHHHHHH----hcCccCCeeecCCCcc--ChHHHHHHHhc
Q 016017 332 SFTGISDGSLRKLA-----GLSSLKSLNLDARQITDTGLAAL----TSLTGLTHLDLFGARI--TDSGAAYLRSK 395 (396)
Q Consensus 332 ~~~~~~~~~~~~l~-----~~~~L~~L~l~~~~l~~~~~~~l----~~~~~L~~l~l~~~~l--~~~~~~~l~~~ 395 (396)
++|.+...+...+. ..|+|+.|.+.+|.++......+ ...|.|+.|+|.+|++ .+.++..+.+.
T Consensus 249 ~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~e~de~i~ei~~~ 323 (382)
T KOG1909|consen 249 GDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLGEKDEGIDEIASK 323 (382)
T ss_pred cccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccccccchhHHHHHHh
Confidence 99988776655543 36889999999988886544333 4568899999999988 55666555543
No 20
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.55 E-value=3.3e-14 Score=134.35 Aligned_cols=164 Identities=21% Similarity=0.103 Sum_probs=69.0
Q ss_pred CCccEEEeecCCCChhHHHhccCCCCCCEEEecCCCCChhhHHHHhcCCCCCEEECCCCCCChHHHHhhhcCCCCcEEEc
Q 016017 180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 259 (396)
Q Consensus 180 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 259 (396)
++|+.|++++|.+.... . ...+|+.|++++|.+... +. -..+|+.|++++|.+...+. ..++|+.|++
T Consensus 302 ~~L~~LdLS~N~L~~Lp-~---lp~~L~~L~Ls~N~L~~L-P~---lp~~Lq~LdLS~N~Ls~LP~----lp~~L~~L~L 369 (788)
T PRK15387 302 PGLQELSVSDNQLASLP-A---LPSELCKLWAYNNQLTSL-PT---LPSGLQELSVSDNQLASLPT----LPSELYKLWA 369 (788)
T ss_pred cccceeECCCCccccCC-C---CcccccccccccCccccc-cc---cccccceEecCCCccCCCCC----CCcccceehh
Confidence 44555555555444321 0 112344555555444321 11 11345555555554432110 1224444555
Q ss_pred cCCcCcHHHHHHhhCCCCCCEEeccCCCCChhHhHHHhCCCCccEEEcCCCCCCchhHHhhcCCCCCCEEeccCcccChh
Q 016017 260 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339 (396)
Q Consensus 260 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 339 (396)
++|.+... +. ...+|+.|++++|.+...+ . ..++|+.|++++|.++... . ...+|+.|++++|+++.
T Consensus 370 s~N~L~~L-P~---l~~~L~~LdLs~N~Lt~LP-~---l~s~L~~LdLS~N~LssIP-~---l~~~L~~L~Ls~NqLt~- 436 (788)
T PRK15387 370 YNNRLTSL-PA---LPSGLKELIVSGNRLTSLP-V---LPSELKELMVSGNRLTSLP-M---LPSGLLSLSVYRNQLTR- 436 (788)
T ss_pred hccccccC-cc---cccccceEEecCCcccCCC-C---cccCCCEEEccCCcCCCCC-c---chhhhhhhhhccCcccc-
Confidence 55444321 11 1234555555555444211 1 1134555555555544321 1 11344555555555443
Q ss_pred hhHhhhCCCCCCEeecCCCCCcHHHHHHH
Q 016017 340 SLRKLAGLSSLKSLNLDARQITDTGLAAL 368 (396)
Q Consensus 340 ~~~~l~~~~~L~~L~l~~~~l~~~~~~~l 368 (396)
++..+.++++|+.|++++|++++..+..+
T Consensus 437 LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 437 LPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred cChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 34444455555555555555554444333
No 21
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.54 E-value=5.8e-14 Score=132.67 Aligned_cols=264 Identities=19% Similarity=0.051 Sum_probs=165.7
Q ss_pred CCCeeeccCCcccChhHHHhhhCCCCCcEEeccCCccccHHHHHHHhCCCCCcEecccccccccCcccccCCCCcccEEe
Q 016017 82 NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161 (396)
Q Consensus 82 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 161 (396)
.-..|+++.+ .+.. .|..+. ++|+.|++++|.. ... + ...++|++|++++|... ..+. ..++|+.|+
T Consensus 202 ~~~~LdLs~~-~Lts-LP~~l~--~~L~~L~L~~N~L-t~L-P---~lp~~Lk~LdLs~N~Lt-sLP~---lp~sL~~L~ 268 (788)
T PRK15387 202 GNAVLNVGES-GLTT-LPDCLP--AHITTLVIPDNNL-TSL-P---ALPPELRTLEVSGNQLT-SLPV---LPPGLLELS 268 (788)
T ss_pred CCcEEEcCCC-CCCc-CCcchh--cCCCEEEccCCcC-CCC-C---CCCCCCcEEEecCCccC-cccC---cccccceee
Confidence 4555666654 3332 222222 3567777766653 211 1 12467777777775322 2221 235677777
Q ss_pred cCCCCCccccccccccCCCCccEEEeecCCCChhHHHhccCCCCCCEEEecCCCCChhhHHHHhcCCCCCEEECCCCCCC
Q 016017 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241 (396)
Q Consensus 162 l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 241 (396)
+.++. +.. .+. ..++|+.|++++|.++.... ..++|+.|++++|.+... +. ...+|+.|++++|.+.
T Consensus 269 Ls~N~-L~~-Lp~---lp~~L~~L~Ls~N~Lt~LP~----~p~~L~~LdLS~N~L~~L-p~---lp~~L~~L~Ls~N~L~ 335 (788)
T PRK15387 269 IFSNP-LTH-LPA---LPSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLT 335 (788)
T ss_pred ccCCc-hhh-hhh---chhhcCEEECcCCccccccc----cccccceeECCCCccccC-CC---CcccccccccccCccc
Confidence 77643 322 111 22567888888887775321 246789999988877652 21 2346778888888765
Q ss_pred hHHHHhhhcCCCCcEEEccCCcCcHHHHHHhhCCCCCCEEeccCCCCChhHhHHHhCCCCccEEEcCCCCCCchhHHhhc
Q 016017 242 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 321 (396)
Q Consensus 242 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~ 321 (396)
..+ . ...+|+.|++++|.+... |. ..++|+.|++++|.+... +. ...+|+.|++++|.++....
T Consensus 336 ~LP-~---lp~~Lq~LdLS~N~Ls~L-P~---lp~~L~~L~Ls~N~L~~L-P~---l~~~L~~LdLs~N~Lt~LP~---- 399 (788)
T PRK15387 336 SLP-T---LPSGLQELSVSDNQLASL-PT---LPSELYKLWAYNNRLTSL-PA---LPSGLKELIVSGNRLTSLPV---- 399 (788)
T ss_pred ccc-c---cccccceEecCCCccCCC-CC---CCcccceehhhccccccC-cc---cccccceEEecCCcccCCCC----
Confidence 422 1 124788999988887653 22 235788888888877642 21 12478889998888764321
Q ss_pred CCCCCCEEeccCcccChhhhHhhhCCCCCCEeecCCCCCcHHHHHHHhcCccCCeeecCCCccChHHHHHH
Q 016017 322 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392 (396)
Q Consensus 322 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~l~~~~~~~l 392 (396)
..++|+.|++++|.++. ++.. ..+|+.|++++|.++.. |..+.++++|+.|++++|++++.....+
T Consensus 400 l~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt~L-P~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 400 LPSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLTRL-PESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred cccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccccc-ChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 23678899999988775 2322 24678888988888865 6678888889999999999988776655
No 22
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.52 E-value=1.6e-13 Score=113.59 Aligned_cols=218 Identities=20% Similarity=0.214 Sum_probs=162.7
Q ss_pred ccCCCCccEEEeecCCCChhHHH----hccCCCCCCEEEecCC---CCChhhH-------HHHhcCCCCCEEECCCCCCC
Q 016017 176 LSGLTNLKSLQISCSKVTDSGIA----YLKGLQKLTLLNLEGC---PVTAACL-------DSLSALGSLFYLNLNRCQLS 241 (396)
Q Consensus 176 l~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~---~~~~~~~-------~~~~~~~~L~~L~l~~~~~~ 241 (396)
+.....++++++++|.+...... .+.+.++|+..++++- +.....+ ..+..+|.|++++++.|.+.
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 34556788888888877764433 3456678888888764 2222222 33456789999999999887
Q ss_pred hHHHH----hhhcCCCCcEEEccCCcCcHHHHHH-------------hhCCCCCCEEeccCCCCChhHh----HHHhCCC
Q 016017 242 DDGCE----KFSKIGSLKVLNLGFNEITDECLVH-------------LKGLTNLESLNLDSCGIGDEGL----VNLTGLC 300 (396)
Q Consensus 242 ~~~~~----~l~~~~~L~~L~l~~~~~~~~~~~~-------------l~~~~~L~~L~l~~~~~~~~~~----~~~~~~~ 300 (396)
..++. .++++..|+.|.+.+|.+....-.. ....+.|+.+...+|++.+.+. ..+...+
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~ 185 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHP 185 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcc
Confidence 66543 4567899999999999886533222 2345899999999998876544 3455678
Q ss_pred CccEEEcCCCCCCchhH----HhhcCCCCCCEEeccCcccChhhhHhh----hCCCCCCEeecCCCCCcHHHHHHHh---
Q 016017 301 NLKCLELSDTQVGSSGL----RHLSGLTNLESINLSFTGISDGSLRKL----AGLSSLKSLNLDARQITDTGLAALT--- 369 (396)
Q Consensus 301 ~L~~L~l~~~~~~~~~~----~~l~~~~~L~~L~l~~~~~~~~~~~~l----~~~~~L~~L~l~~~~l~~~~~~~l~--- 369 (396)
.|+.+.+..|.|...+. ..+..|++|+.|+|.+|.++......+ ...++|+.|++.+|.+...+...+.
T Consensus 186 ~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al 265 (382)
T KOG1909|consen 186 TLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDAL 265 (382)
T ss_pred ccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHH
Confidence 99999999999866555 345789999999999998876554444 4578999999999998876665542
Q ss_pred --cCccCCeeecCCCccChHHHHHHH
Q 016017 370 --SLTGLTHLDLFGARITDSGAAYLR 393 (396)
Q Consensus 370 --~~~~L~~l~l~~~~l~~~~~~~l~ 393 (396)
..|+|+.+++.+|.|+.++...+.
T Consensus 266 ~~~~p~L~vl~l~gNeIt~da~~~la 291 (382)
T KOG1909|consen 266 KESAPSLEVLELAGNEITRDAALALA 291 (382)
T ss_pred hccCCCCceeccCcchhHHHHHHHHH
Confidence 479999999999999999887665
No 23
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=2.9e-14 Score=115.38 Aligned_cols=264 Identities=22% Similarity=0.257 Sum_probs=164.5
Q ss_pred CCcHHHHHHHHHHhHhccccCchhhcccccCceeEeccCCCCCCCchHHHHHHhcCCCccEEEeecCCCChHHHHHhhCC
Q 016017 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDC 80 (396)
Q Consensus 1 ~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~ 80 (396)
.+|+|+...+|..|.....+..+ +++..|.. ++..-+.++.+|+.+-++.......+..
T Consensus 100 slpDEill~IFs~L~kk~LL~~~-------------------~VC~Rfyr-~~~de~lW~~lDl~~r~i~p~~l~~l~~- 158 (419)
T KOG2120|consen 100 SLPDEILLGIFSCLCKKELLKVS-------------------GVCKRFYR-LASDESLWQTLDLTGRNIHPDVLGRLLS- 158 (419)
T ss_pred cCCHHHHHHHHHhccHHHHHHHH-------------------HHHHHHhh-ccccccceeeeccCCCccChhHHHHHHh-
Confidence 37999999999877665555432 22333332 2223468888888887776555544432
Q ss_pred CCCCeeeccCCcccChhHH-HhhhCC-CCCcEEeccCCccccHHHHHHHhCCCCCcEecccccccccCcccccCCCCccc
Q 016017 81 SNLQSLDFNFCIQISDGGL-EHLRGL-SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158 (396)
Q Consensus 81 ~~L~~L~l~~~~~~~~~~~-~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 158 (396)
.....+.+... .+.+... +.+.-+ .+|+++|++.........-..++.|.+|+.|.+.+....+.....+++-.+|+
T Consensus 159 rgV~v~Rlar~-~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~ 237 (419)
T KOG2120|consen 159 RGVIVFRLARS-FMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLV 237 (419)
T ss_pred CCeEEEEcchh-hhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccce
Confidence 13334434321 2222211 111112 45999999987654444445667899999999998776666666688888999
Q ss_pred EEecCCCCCcccccccc-ccCCCCccEEEeecCCCChhHHHhc--cCCCCCCEEEecCCC--CChh-hHHHHhcCCCCCE
Q 016017 159 SLNIKWCNCITDSDMKP-LSGLTNLKSLQISCSKVTDSGIAYL--KGLQKLTLLNLEGCP--VTAA-CLDSLSALGSLFY 232 (396)
Q Consensus 159 ~L~l~~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~~--~~~~-~~~~~~~~~~L~~ 232 (396)
.|++++|..++...... +.+|..|.+|++++|.........+ +--++|+.|+++|+. +... ......++|+|..
T Consensus 238 ~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~ 317 (419)
T KOG2120|consen 238 RLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVH 317 (419)
T ss_pred eeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceee
Confidence 99999988887765554 4578899999999997665444333 234788888888872 2222 2223346788888
Q ss_pred EECCCCC-CChHHHHhhhcCCCCcEEEccCCcC-cHHHHHHhhCCCCCCEEeccCC
Q 016017 233 LNLNRCQ-LSDDGCEKFSKIGSLKVLNLGFNEI-TDECLVHLKGLTNLESLNLDSC 286 (396)
Q Consensus 233 L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~~~-~~~~~~~l~~~~~L~~L~l~~~ 286 (396)
|+++++. +.+.....+.+++.|++|.++.|.. .......+...|.|.+|++.++
T Consensus 318 LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 318 LDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred eccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 8887764 3444445566677777777776632 1111223445566777766665
No 24
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.41 E-value=6.6e-13 Score=126.27 Aligned_cols=234 Identities=14% Similarity=0.123 Sum_probs=123.5
Q ss_pred CCCcEecccccccccCcccccCCCCcccEEecCCCCCccccccccccCCCCccEEEeecCCCChhHHHhccCCCCCCEEE
Q 016017 131 INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210 (396)
Q Consensus 131 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 210 (396)
++|+.|++++|.. ...+..+ .++|+.|+++++. ++. .+..+ .++|+.|++++|.+...+ ..+ ..+|+.|+
T Consensus 199 ~~L~~L~Ls~N~L-tsLP~~l--~~nL~~L~Ls~N~-Lts-LP~~l--~~~L~~L~Ls~N~L~~LP-~~l--~s~L~~L~ 268 (754)
T PRK15370 199 EQITTLILDNNEL-KSLPENL--QGNIKTLYANSNQ-LTS-IPATL--PDTIQEMELSINRITELP-ERL--PSALQSLD 268 (754)
T ss_pred cCCcEEEecCCCC-CcCChhh--ccCCCEEECCCCc-ccc-CChhh--hccccEEECcCCccCcCC-hhH--hCCCCEEE
Confidence 3566666666532 2222222 2356666666532 332 12222 135666777766665332 222 13567777
Q ss_pred ecCCCCChhhHHHHhcCCCCCEEECCCCCCChHHHHhhhcCCCCcEEEccCCcCcHHHHHHhhCCCCCCEEeccCCCCCh
Q 016017 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290 (396)
Q Consensus 211 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 290 (396)
+++|.+.. .+..+ .++|+.|++++|.+.... ..+ .++|+.|++++|.+... +.. ..++|+.|.+.+|.+..
T Consensus 269 Ls~N~L~~-LP~~l--~~sL~~L~Ls~N~Lt~LP-~~l--p~sL~~L~Ls~N~Lt~L-P~~--l~~sL~~L~Ls~N~Lt~ 339 (754)
T PRK15370 269 LFHNKISC-LPENL--PEELRYLSVYDNSIRTLP-AHL--PSGITHLNVQSNSLTAL-PET--LPPGLKTLEAGENALTS 339 (754)
T ss_pred CcCCccCc-ccccc--CCCCcEEECCCCccccCc-ccc--hhhHHHHHhcCCccccC-Ccc--ccccceeccccCCcccc
Confidence 77666553 22222 246777777776654321 111 13566666666665532 211 12567777777776654
Q ss_pred hHhHHHhCCCCccEEEcCCCCCCchhHHhhcCCCCCCEEeccCcccChhhhHhhhCCCCCCEeecCCCCCcHH---HHHH
Q 016017 291 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT---GLAA 367 (396)
Q Consensus 291 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~---~~~~ 367 (396)
. +..+. ++|+.|++++|+++... ..+ .++|++|++++|.++. .+..+. +.|+.|++++|++... .+..
T Consensus 340 L-P~~l~--~sL~~L~Ls~N~L~~LP-~~l--p~~L~~LdLs~N~Lt~-LP~~l~--~sL~~LdLs~N~L~~LP~sl~~~ 410 (754)
T PRK15370 340 L-PASLP--PELQVLDVSKNQITVLP-ETL--PPTITTLDVSRNALTN-LPENLP--AALQIMQASRNNLVRLPESLPHF 410 (754)
T ss_pred C-Chhhc--CcccEEECCCCCCCcCC-hhh--cCCcCEEECCCCcCCC-CCHhHH--HHHHHHhhccCCcccCchhHHHH
Confidence 2 22232 57777777777765322 222 2567777777776664 233332 3577777777776643 1222
Q ss_pred HhcCccCCeeecCCCccChHHHHHH
Q 016017 368 LTSLTGLTHLDLFGARITDSGAAYL 392 (396)
Q Consensus 368 l~~~~~L~~l~l~~~~l~~~~~~~l 392 (396)
...++++..+++.+|+++...+..+
T Consensus 411 ~~~~~~l~~L~L~~Npls~~tl~~L 435 (754)
T PRK15370 411 RGEGPQPTRIIVEYNPFSERTIQNM 435 (754)
T ss_pred hhcCCCccEEEeeCCCccHHHHHHH
Confidence 2344667777777777776655544
No 25
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=2.4e-13 Score=115.66 Aligned_cols=208 Identities=20% Similarity=0.150 Sum_probs=145.0
Q ss_pred ceeEeccCCCCCCCchHHHHHHhcCCCccEEEeecCCCChHH--HHHhhCCCCCCeeeccCCcccChhHHH-hhhCCCCC
Q 016017 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSG--LIHLKDCSNLQSLDFNFCIQISDGGLE-HLRGLSNL 108 (396)
Q Consensus 32 ~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~--~~~l~~~~~L~~L~l~~~~~~~~~~~~-~l~~~~~L 108 (396)
+++++.+++| .+.+...+...+.|++++.|+|+.|-+.... ......+|+|+.|+++.+ .+...... .-..+++|
T Consensus 122 kL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~N-rl~~~~~s~~~~~l~~l 199 (505)
T KOG3207|consen 122 KLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSN-RLSNFISSNTTLLLSHL 199 (505)
T ss_pred hhhheeecCc-cccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccc-cccCCccccchhhhhhh
Confidence 6888999988 4445554477789999999999998765332 233458999999999886 33322111 11367889
Q ss_pred cEEeccCCccccHHHHHHHhCCCCCcEecccccccccCcccccCCCCcccEEecCCCCCccccccccccCCCCccEEEee
Q 016017 109 TSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188 (396)
Q Consensus 109 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 188 (396)
+.|.+++|+............+|+|+.|.+..|...........-+..|++|++++++.+........+.++.|+.|+++
T Consensus 200 K~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls 279 (505)
T KOG3207|consen 200 KQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLS 279 (505)
T ss_pred heEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhcc
Confidence 99999999864333333445799999999999864433333455678899999999777766556677788999999999
Q ss_pred cCCCChhHHH------hccCCCCCCEEEecCCCCCh-hhHHHHhcCCCCCEEECCCCCCC
Q 016017 189 CSKVTDSGIA------YLKGLQKLTLLNLEGCPVTA-ACLDSLSALGSLFYLNLNRCQLS 241 (396)
Q Consensus 189 ~~~~~~~~~~------~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~ 241 (396)
.+.+...... -....++|+.|++..|++.. .....+..+++|+.+.+..+.+.
T Consensus 280 ~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 280 STGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred ccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 8887653221 12556888888888887733 22334455677777777666554
No 26
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=2.3e-12 Score=104.56 Aligned_cols=181 Identities=23% Similarity=0.291 Sum_probs=104.8
Q ss_pred CCccEEEeecCCCChHHH-HHhhCCCCCCeeeccCCcccChhHHHhhhCCCCCcEEeccCCccccHHHHH-HHhCCCCCc
Q 016017 57 SSLLSVDLSGSDVTDSGL-IHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMK-AFAGLINLV 134 (396)
Q Consensus 57 ~~l~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~~L~ 134 (396)
+.++++||+...++.... ..++.|.+|+.|.+.+. .+.+.....+++..+|+.++++.|..++..... .+.+|..|.
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~-~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGL-RLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD 263 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhcccccc-ccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHh
Confidence 468888888888876555 34467888888888875 677777777788888888888887665554443 345677777
Q ss_pred EecccccccccCcccccCCCCcccEEecCCCCCccccccccccC-CCCccEEEeecCC--CChhHHHhc-cCCCCCCEEE
Q 016017 135 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG-LTNLKSLQISCSK--VTDSGIAYL-KGLQKLTLLN 210 (396)
Q Consensus 135 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~--~~~~~~~~~-~~~~~L~~L~ 210 (396)
+|+++.|........ ..+.. -++|+.|+++++. +.......+ ..|++|..|+
T Consensus 264 ~LNlsWc~l~~~~Vt------------------------v~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LD 319 (419)
T KOG2120|consen 264 ELNLSWCFLFTEKVT------------------------VAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLD 319 (419)
T ss_pred hcCchHhhccchhhh------------------------HHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeec
Confidence 777776643322211 11111 1344555555442 111111222 4556666666
Q ss_pred ecCC-CCChhhHHHHhcCCCCCEEECCCCC-CChHHHHhhhcCCCCcEEEccCC
Q 016017 211 LEGC-PVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGFN 262 (396)
Q Consensus 211 l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~ 262 (396)
++++ .+.......+.+++.|+++.++.|- +.....-.+...|+|.+|++.++
T Consensus 320 LSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 320 LSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred cccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 6665 3444444555566666666666653 22222233445666666666655
No 27
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.29 E-value=1.7e-11 Score=116.78 Aligned_cols=80 Identities=11% Similarity=0.051 Sum_probs=32.4
Q ss_pred CCCCEEeccCCCCChhHhHHHhCCCCccEEEcCCCCCCchhHHhhcCCCCCCEEeccCcccChh---hhHhhhCCCCCCE
Q 016017 276 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG---SLRKLAGLSSLKS 352 (396)
Q Consensus 276 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~---~~~~l~~~~~L~~ 352 (396)
++|+.|++++|.+... +..+. ++|+.|++++|.++..... +. +.|+.|++++|++... .+.....++.+..
T Consensus 346 ~sL~~L~Ls~N~L~~L-P~~lp--~~L~~LdLs~N~Lt~LP~~-l~--~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~ 419 (754)
T PRK15370 346 PELQVLDVSKNQITVL-PETLP--PTITTLDVSRNALTNLPEN-LP--AALQIMQASRNNLVRLPESLPHFRGEGPQPTR 419 (754)
T ss_pred CcccEEECCCCCCCcC-Chhhc--CCcCEEECCCCcCCCCCHh-HH--HHHHHHhhccCCcccCchhHHHHhhcCCCccE
Confidence 3455555555544321 12221 3455555555544432111 11 2344555555544321 1111222344555
Q ss_pred eecCCCCCc
Q 016017 353 LNLDARQIT 361 (396)
Q Consensus 353 L~l~~~~l~ 361 (396)
+++.+|++.
T Consensus 420 L~L~~Npls 428 (754)
T PRK15370 420 IIVEYNPFS 428 (754)
T ss_pred EEeeCCCcc
Confidence 555555544
No 28
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.20 E-value=1.5e-12 Score=125.80 Aligned_cols=206 Identities=19% Similarity=0.156 Sum_probs=123.3
Q ss_pred cHHHHHHHHHHhHhccccCchhhc-ccccCceeEeccCCCCCCCc----hHHHHH------------HhcCCCccEEEee
Q 016017 3 PRDISQQIFNELVYSRCLTEVSLE-AFRDCALQDLCLGQYPGVND----KWMDVI------------ASQGSSLLSVDLS 65 (396)
Q Consensus 3 p~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~l~~l~l~~~~~~~~----~~~~~~------------~~~~~~l~~L~l~ 65 (396)
.++.++.|+.+|+.++.+...... ....|++||+..+-|-.+.. +.-..+ ......++...+-
T Consensus 452 ~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~ 531 (889)
T KOG4658|consen 452 AEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLM 531 (889)
T ss_pred hhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEe
Confidence 467899999999999998876543 44556777776554321111 000000 0122344555555
Q ss_pred cCCCChHHHHHhhCCCCCCeeeccCCcc-cChhHHHhhhCCCCCcEEeccCCccccHHHHHHHhCCCCCcEecccccccc
Q 016017 66 GSDVTDSGLIHLKDCSNLQSLDFNFCIQ-ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI 144 (396)
Q Consensus 66 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 144 (396)
++++.. . ..-..+|.|++|-+..+.. +......+|..+|.|+.||+++|.. ....|..++++-+|++|+++++ .+
T Consensus 532 ~~~~~~-~-~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~-l~~LP~~I~~Li~LryL~L~~t-~I 607 (889)
T KOG4658|consen 532 NNKIEH-I-AGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSS-LSKLPSSIGELVHLRYLDLSDT-GI 607 (889)
T ss_pred ccchhh-c-cCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCc-cCcCChHHhhhhhhhcccccCC-Cc
Confidence 554321 1 1113556788887766432 4445555677788888888888763 3445677888888888888874 45
Q ss_pred cCcccccCCCCcccEEecCCCCCccccccccccCCCCccEEEeecCC--CChhHHHhccCCCCCCEEEecC
Q 016017 145 HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK--VTDSGIAYLKGLQKLTLLNLEG 213 (396)
Q Consensus 145 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~--~~~~~~~~~~~~~~L~~L~l~~ 213 (396)
...|..+++++.|.+|++..+...... +.....+++|++|.+.... ........+..+..|+.+.+..
T Consensus 608 ~~LP~~l~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~ 677 (889)
T KOG4658|consen 608 SHLPSGLGNLKKLIYLNLEVTGRLESI-PGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITI 677 (889)
T ss_pred cccchHHHHHHhhheeccccccccccc-cchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeec
Confidence 566667788888888888764443322 3444457888888876553 2222233445555566555543
No 29
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.16 E-value=1.6e-13 Score=102.16 Aligned_cols=159 Identities=21% Similarity=0.276 Sum_probs=124.6
Q ss_pred CCCCCCEEEecCCCCChhhHHHHhcCCCCCEEECCCCCCChHHHHhhhcCCCCcEEEccCCcCcHHHHHHhhCCCCCCEE
Q 016017 202 GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 281 (396)
Q Consensus 202 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 281 (396)
.+...+.|.++++.++.. +..+..+.+|+.|++.+|++.+ .+..++.+++|+.|+++-|.+.. .|..|+.+|.|+.|
T Consensus 31 ~~s~ITrLtLSHNKl~~v-ppnia~l~nlevln~~nnqie~-lp~~issl~klr~lnvgmnrl~~-lprgfgs~p~levl 107 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVV-PPNIAELKNLEVLNLSNNQIEE-LPTSISSLPKLRILNVGMNRLNI-LPRGFGSFPALEVL 107 (264)
T ss_pred chhhhhhhhcccCceeec-CCcHHHhhhhhhhhcccchhhh-cChhhhhchhhhheecchhhhhc-CccccCCCchhhhh
Confidence 456677888899887664 5567888999999999888754 45678899999999998877654 47788999999999
Q ss_pred eccCCCCChh-HhHHHhCCCCccEEEcCCCCCCchhHHhhcCCCCCCEEeccCcccChhhhHhhhCCCCCCEeecCCCCC
Q 016017 282 NLDSCGIGDE-GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360 (396)
Q Consensus 282 ~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l 360 (396)
++..+.+... .+..|..+..|+.|.+++|.+.- .+..++.+++|+.|.+.+|.+-+ .+..++.+..|++|++++|++
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl~dndfe~-lp~dvg~lt~lqil~lrdndll~-lpkeig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEI-LPPDVGKLTNLQILSLRDNDLLS-LPKEIGDLTRLRELHIQGNRL 185 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHhcCCCccc-CChhhhhhcceeEEeeccCchhh-CcHHHHHHHHHHHHhccccee
Confidence 9998877643 45556667788889999988753 34556778999999999987665 577788889999999999988
Q ss_pred cHHHH
Q 016017 361 TDTGL 365 (396)
Q Consensus 361 ~~~~~ 365 (396)
+-..+
T Consensus 186 ~vlpp 190 (264)
T KOG0617|consen 186 TVLPP 190 (264)
T ss_pred eecCh
Confidence 76533
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=1.4e-11 Score=105.09 Aligned_cols=210 Identities=26% Similarity=0.237 Sum_probs=145.6
Q ss_pred CCCCcccEEecCCCCCcccccc-ccccCCCCccEEEeecCCCChh--HHHhccCCCCCCEEEecCCCCChhhHHHH-hcC
Q 016017 152 KGLMKLESLNIKWCNCITDSDM-KPLSGLTNLKSLQISCSKVTDS--GIAYLKGLQKLTLLNLEGCPVTAACLDSL-SAL 227 (396)
Q Consensus 152 ~~~~~L~~L~l~~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~ 227 (396)
.++++|+.+.+.++.. ..... .....|++++.|+++.|-+... .......+|+|+.|+++.|.+........ ..+
T Consensus 118 sn~kkL~~IsLdn~~V-~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRV-EDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCccc-cccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 5677899999987442 22111 3566899999999999866542 23444778999999999986644222211 256
Q ss_pred CCCCEEECCCCCCChHHH-HhhhcCCCCcEEEccCCcCcHHHHHHhhCCCCCCEEeccCCCCChh-HhHHHhCCCCccEE
Q 016017 228 GSLFYLNLNRCQLSDDGC-EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE-GLVNLTGLCNLKCL 305 (396)
Q Consensus 228 ~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L 305 (396)
++|+.|.++.|+++-... ..+..+|+|+.|.+..|..-.........+..|+.|++++|.+.+. .....+.+|.|+.|
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence 899999999999875443 3456799999999998842111111223456899999999976653 23445678999999
Q ss_pred EcCCCCCCchhHHh------hcCCCCCCEEeccCcccChh-hhHhhhCCCCCCEeecCCCCCcH
Q 016017 306 ELSDTQVGSSGLRH------LSGLTNLESINLSFTGISDG-SLRKLAGLSSLKSLNLDARQITD 362 (396)
Q Consensus 306 ~l~~~~~~~~~~~~------l~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~l~~ 362 (396)
+++.|.++...... ...+++|++|++..|++.++ ....+..+++|+.|.+..+.++.
T Consensus 277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred hccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence 99999876532221 24679999999999988653 24455667899999988887775
No 31
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.14 E-value=1.8e-13 Score=101.87 Aligned_cols=156 Identities=24% Similarity=0.283 Sum_probs=105.1
Q ss_pred CCCCccEEEeecCCCChhHHHhccCCCCCCEEEecCCCCChhhHHHHhcCCCCCEEECCCCCCChHHHHhhhcCCCCcEE
Q 016017 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 257 (396)
Q Consensus 178 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 257 (396)
.+++++.|.+++|.++.. +..+..+.+|+.|+++++++.. .+..++.++.|+.|++.-|.+. ..+..|+.+|.|+.|
T Consensus 31 ~~s~ITrLtLSHNKl~~v-ppnia~l~nlevln~~nnqie~-lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl 107 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVV-PPNIAELKNLEVLNLSNNQIEE-LPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL 107 (264)
T ss_pred chhhhhhhhcccCceeec-CCcHHHhhhhhhhhcccchhhh-cChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence 456677777788777654 3356667788888888777765 3666777788888877766543 245667778888888
Q ss_pred EccCCcCcHH-HHHHhhCCCCCCEEeccCCCCChhHhHHHhCCCCccEEEcCCCCCCchhHHhhcCCCCCCEEeccCccc
Q 016017 258 NLGFNEITDE-CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 336 (396)
Q Consensus 258 ~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 336 (396)
++..|.+... .|..|..+..|+.|.++++.+.- .+..++++.+|+.|.+.+|.+-. .+..++.+..|++|.+.+|.+
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl~dndfe~-lp~dvg~lt~lqil~lrdndll~-lpkeig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEI-LPPDVGKLTNLQILSLRDNDLLS-LPKEIGDLTRLRELHIQGNRL 185 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHhcCCCccc-CChhhhhhcceeEEeeccCchhh-CcHHHHHHHHHHHHhccccee
Confidence 8877666432 34445556677777777776643 34556777788888888776532 234455667778888877766
Q ss_pred Ch
Q 016017 337 SD 338 (396)
Q Consensus 337 ~~ 338 (396)
+.
T Consensus 186 ~v 187 (264)
T KOG0617|consen 186 TV 187 (264)
T ss_pred ee
Confidence 54
No 32
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=99.10 E-value=7.5e-11 Score=94.65 Aligned_cols=248 Identities=21% Similarity=0.206 Sum_probs=141.8
Q ss_pred HHhCCCCCcEecccccccccCcccc----cCCCCcccEEecCCCCCccccccccccCCCCccEEEeecCCCChhHHHhcc
Q 016017 126 AFAGLINLVKLDLERCTRIHGGLVN----LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLK 201 (396)
Q Consensus 126 ~~~~~~~L~~L~l~~~~~~~~~~~~----l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 201 (396)
.+..+..++.+++++|+.-...... +.+-.+|+..+++.. +++.....+. .+ -......+.
T Consensus 25 el~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~--ftgr~kde~~--~~-----------L~~Ll~aLl 89 (388)
T COG5238 25 ELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA--FTGRDKDELY--SN-----------LVMLLKALL 89 (388)
T ss_pred HHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh--hhcccHHHHH--HH-----------HHHHHHHHh
Confidence 3445677778888877655444332 334445555555431 1110000000 00 001123345
Q ss_pred CCCCCCEEEecCCCCChh----hHHHHhcCCCCCEEECCCCCCChHHHHh-------------hhcCCCCcEEEccCCcC
Q 016017 202 GLQKLTLLNLEGCPVTAA----CLDSLSALGSLFYLNLNRCQLSDDGCEK-------------FSKIGSLKVLNLGFNEI 264 (396)
Q Consensus 202 ~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~-------------l~~~~~L~~L~l~~~~~ 264 (396)
.||.|+.+++|+|-+... ....++.-+.|.+|.+++|.+....... .++-|.|+++....|++
T Consensus 90 kcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRl 169 (388)
T COG5238 90 KCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRL 169 (388)
T ss_pred cCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchh
Confidence 566666666666644332 2234455567777777777654332111 23457788888887765
Q ss_pred cHHH----HHHhhCCCCCCEEeccCCCCChhHhHH-----HhCCCCccEEEcCCCCCCchhHHhh----cCCCCCCEEec
Q 016017 265 TDEC----LVHLKGLTNLESLNLDSCGIGDEGLVN-----LTGLCNLKCLELSDTQVGSSGLRHL----SGLTNLESINL 331 (396)
Q Consensus 265 ~~~~----~~~l~~~~~L~~L~l~~~~~~~~~~~~-----~~~~~~L~~L~l~~~~~~~~~~~~l----~~~~~L~~L~l 331 (396)
..-. ...+..-.+|+.+.+..|.+..++... +..+.+|+.|++.+|.++..+...+ ..++.|++|.+
T Consensus 170 engs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~l 249 (388)
T COG5238 170 ENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRL 249 (388)
T ss_pred ccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccc
Confidence 3211 112223358888888888776553322 3457789999999988876655444 56788899999
Q ss_pred cCcccChhhhHhhh------CCCCCCEeecCCCCCcHHHH-----HHH--hcCccCCeeecCCCccChHH
Q 016017 332 SFTGISDGSLRKLA------GLSSLKSLNLDARQITDTGL-----AAL--TSLTGLTHLDLFGARITDSG 388 (396)
Q Consensus 332 ~~~~~~~~~~~~l~------~~~~L~~L~l~~~~l~~~~~-----~~l--~~~~~L~~l~l~~~~l~~~~ 388 (396)
.+|-++..+...+. ..|+|..|...+|.+..... ..+ .++|-|..+.+.||++.+.+
T Consensus 250 nDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E~~ 319 (388)
T COG5238 250 NDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKELA 319 (388)
T ss_pred cchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchhHH
Confidence 88876654444332 35888888888875442211 122 35788888888889887654
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.08 E-value=6.7e-11 Score=91.80 Aligned_cols=104 Identities=32% Similarity=0.343 Sum_probs=20.9
Q ss_pred CCCEEECCCCCCChHHHHhhh-cCCCCcEEEccCCcCcHHHHHHhhCCCCCCEEeccCCCCChhHhHHHhCCCCccEEEc
Q 016017 229 SLFYLNLNRCQLSDDGCEKFS-KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 307 (396)
Q Consensus 229 ~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 307 (396)
.++.|++.++.+... +.++ .+.+|+.|++++|.+... ..+..+++|++|++++|.+..........+|+|++|.+
T Consensus 20 ~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 20 KLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYL 95 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-
T ss_pred ccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcCCEEEC
Confidence 445555555444321 1222 234455555555544432 22334444555555544444321111123444444444
Q ss_pred CCCCCCch-hHHhhcCCCCCCEEeccCccc
Q 016017 308 SDTQVGSS-GLRHLSGLTNLESINLSFTGI 336 (396)
Q Consensus 308 ~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~ 336 (396)
++|++.+. ....+..+|+|+.|++.+|++
T Consensus 96 ~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 96 SNNKISDLNELEPLSSLPKLRVLSLEGNPV 125 (175)
T ss_dssp TTS---SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred cCCcCCChHHhHHHHcCCCcceeeccCCcc
Confidence 44444321 112333444444444444443
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.98 E-value=4.9e-10 Score=86.99 Aligned_cols=122 Identities=34% Similarity=0.407 Sum_probs=31.7
Q ss_pred CCcEEEccCCcCcHHHHHHhh-CCCCCCEEeccCCCCChhHhHHHhCCCCccEEEcCCCCCCchhHHhhcCCCCCCEEec
Q 016017 253 SLKVLNLGFNEITDECLVHLK-GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 331 (396)
Q Consensus 253 ~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 331 (396)
+++.|++.++.+... ..++ .+.+|+.|++++|.+... +.+..++.|+.|++++|.++.........+|+|++|++
T Consensus 20 ~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 20 KLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYL 95 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-
T ss_pred ccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcCCEEEC
Confidence 455555555554432 1232 344555555555555432 22344555555555555555432221123555555555
Q ss_pred cCcccChh-hhHhhhCCCCCCEeecCCCCCcHHH---HHHHhcCccCCeee
Q 016017 332 SFTGISDG-SLRKLAGLSSLKSLNLDARQITDTG---LAALTSLTGLTHLD 378 (396)
Q Consensus 332 ~~~~~~~~-~~~~l~~~~~L~~L~l~~~~l~~~~---~~~l~~~~~L~~l~ 378 (396)
++|.+.+. ....+..+|+|+.|++.+|++.+.. ...+..+|+|+.||
T Consensus 96 ~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 96 SNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred cCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence 55554432 1233344555555555555544211 13334555555554
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.89 E-value=5.3e-10 Score=91.22 Aligned_cols=225 Identities=21% Similarity=0.173 Sum_probs=127.8
Q ss_pred hhCCCCCcEEeccCCcc-------ccHHHHHHHhCCCCCcEecccccccccCcccccCCCCcccEEecCCCCCccccccc
Q 016017 102 LRGLSNLTSLSFRRNNA-------ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174 (396)
Q Consensus 102 l~~~~~L~~L~l~~~~~-------~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 174 (396)
+..+.+|++|.+++... .....+-.+..+.+|+.+.++.|.--... .-...-|.|+++.+..... + ..+
T Consensus 178 ldf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~-~~~~~kptl~t~~v~~s~~-~--~~~ 253 (490)
T KOG1259|consen 178 LDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIV-DIELLKPTLQTICVHNTTI-Q--DVP 253 (490)
T ss_pred HHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhhee-ceeecCchhheeeeecccc-c--ccc
Confidence 34567788888776432 11222222345678888888876422111 1112236777777765221 1 111
Q ss_pred cccCCCCccEEEeecC---CCChhHHHhccCCCCCCEEEecCCCCChhhHHHHhcCCCCCEEECCCCCCChHHHHhhhcC
Q 016017 175 PLSGLTNLKSLQISCS---KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI 251 (396)
Q Consensus 175 ~l~~~~~L~~L~l~~~---~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~ 251 (396)
.+--... ..+..+. ..++.....+.....|+++++++|.++.. ...+.-.|.++.|+++.|.+.... .++.+
T Consensus 254 ~l~pe~~--~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~i-DESvKL~Pkir~L~lS~N~i~~v~--nLa~L 328 (490)
T KOG1259|consen 254 SLLPETI--LADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQI-DESVKLAPKLRRLILSQNRIRTVQ--NLAEL 328 (490)
T ss_pred cccchhh--hcCccCCCCCccCCceEEecchHhhhhhccccccchhhh-hhhhhhccceeEEeccccceeeeh--hhhhc
Confidence 1110111 1111111 11111111222345677788888766542 345555688888888888765433 36777
Q ss_pred CCCcEEEccCCcCcHHHHHHhhCCCCCCEEeccCCCCChhHhHHHhCCCCccEEEcCCCCCCch-hHHhhcCCCCCCEEe
Q 016017 252 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS-GLRHLSGLTNLESIN 330 (396)
Q Consensus 252 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~ 330 (396)
++|+.|++++|.+.... .+=..+.++++|.+.+|.+.+ ...+.++.+|..|++++|+|... ....++++|.|+.+.
T Consensus 329 ~~L~~LDLS~N~Ls~~~-Gwh~KLGNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~ 405 (490)
T KOG1259|consen 329 PQLQLLDLSGNLLAECV-GWHLKLGNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLR 405 (490)
T ss_pred ccceEeecccchhHhhh-hhHhhhcCEeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHh
Confidence 88888888888765532 222356788888888887643 34456667888888888887543 245567888888888
Q ss_pred ccCcccCh
Q 016017 331 LSFTGISD 338 (396)
Q Consensus 331 l~~~~~~~ 338 (396)
+.+|.+..
T Consensus 406 L~~NPl~~ 413 (490)
T KOG1259|consen 406 LTGNPLAG 413 (490)
T ss_pred hcCCCccc
Confidence 88886654
No 36
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.89 E-value=7.2e-10 Score=107.59 Aligned_cols=272 Identities=24% Similarity=0.253 Sum_probs=148.1
Q ss_pred cCCCccEEEeecCC--CChHHHHHhhCCCCCCeeeccCCcccChhHHHhhhCCCCCcEEeccCCccccHHHHHHHhCCCC
Q 016017 55 QGSSLLSVDLSGSD--VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLIN 132 (396)
Q Consensus 55 ~~~~l~~L~l~~~~--~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 132 (396)
.++.+++|-+..+. +.......|..+|.|++|++++|.. ....|..++.+-+||+|+++++.. . ..|..+.++..
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~-l~~LP~~I~~Li~LryL~L~~t~I-~-~LP~~l~~Lk~ 619 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSS-LSKLPSSIGELVHLRYLDLSDTGI-S-HLPSGLGNLKK 619 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCc-cCcCChHHhhhhhhhcccccCCCc-c-ccchHHHHHHh
Confidence 45678888888775 4444456677889999999988643 344577888888999999988763 3 45677888889
Q ss_pred CcEecccccccccCcccccCCCCcccEEecCCCC-CccccccccccCCCCccEEEeecCCCChhHHHhccCCCCCC----
Q 016017 133 LVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCN-CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT---- 207 (396)
Q Consensus 133 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~---- 207 (396)
|.+|++..+......+.....+.+|++|.+.... ..+......+..+.+|+.+.+..... .....+.....|.
T Consensus 620 L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~ 697 (889)
T KOG4658|consen 620 LIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLLGMTRLRSLLQ 697 (889)
T ss_pred hheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhhhhhhHHHHHHhH
Confidence 9999888766555554445668888988887633 22222333445556666666543322 1112222222222
Q ss_pred EEEecCCCCChhhHHHHhcCCCCCEEECCCCCCChHHHHhhhc------CCCCcEEEccCCcCcHHHHHHhhCCCCCCEE
Q 016017 208 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK------IGSLKVLNLGFNEITDECLVHLKGLTNLESL 281 (396)
Q Consensus 208 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~------~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 281 (396)
.+.+.++... .....+..+.+|+.|.+.++...+........ ++++..+.+.++..... +......|+|++|
T Consensus 698 ~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~-l~~~~f~~~L~~l 775 (889)
T KOG4658|consen 698 SLSIEGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRD-LTWLLFAPHLTSL 775 (889)
T ss_pred hhhhcccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccc-cchhhccCcccEE
Confidence 2222222211 12344556778888888777765332211110 22222222222221111 1122345677777
Q ss_pred eccCCCCChhHhHHHhCCCCccEEEcCCCCCCch-hHHhhcCCCCCCEEeccC
Q 016017 282 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS-GLRHLSGLTNLESINLSF 333 (396)
Q Consensus 282 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~ 333 (396)
.+..|....+.......+..+..+.+..+.+... ....++.++++..+.+..
T Consensus 776 ~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~ 828 (889)
T KOG4658|consen 776 SLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSF 828 (889)
T ss_pred EEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccCc
Confidence 7777765544443333444444444444443332 223334444444444443
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.87 E-value=5.8e-10 Score=91.02 Aligned_cols=128 Identities=28% Similarity=0.287 Sum_probs=61.7
Q ss_pred CCCcEEEccCCcCcHHHHHHhhCCCCCCEEeccCCCCChhHhHHHhCCCCccEEEcCCCCCCchhHHhhcCCCCCCEEec
Q 016017 252 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 331 (396)
Q Consensus 252 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 331 (396)
..|+.+++++|.+... .....-.|.++.|+++.|.+.... .+..+++|+.|++++|.++... .+-..+-++++|.+
T Consensus 284 q~LtelDLS~N~I~~i-DESvKL~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls~~~-Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 284 QELTELDLSGNLITQI-DESVKLAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLAECV-GWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhhccccccchhhh-hhhhhhccceeEEeccccceeeeh--hhhhcccceEeecccchhHhhh-hhHhhhcCEeeeeh
Confidence 3455555555554432 223334455555555555554322 2444555555555555443211 11123445555555
Q ss_pred cCcccChhhhHhhhCCCCCCEeecCCCCCcHHH-HHHHhcCccCCeeecCCCccC
Q 016017 332 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTG-LAALTSLTGLTHLDLFGARIT 385 (396)
Q Consensus 332 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~-~~~l~~~~~L~~l~l~~~~l~ 385 (396)
++|.+.+ ...+..+-+|..|++++|+|.... ...++++|.|+.+.+.+|+++
T Consensus 360 a~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 360 AQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred hhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 5554443 333444555555555555554322 245555555555555555544
No 38
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.84 E-value=3.2e-08 Score=79.88 Aligned_cols=211 Identities=17% Similarity=0.151 Sum_probs=136.0
Q ss_pred ccCCCCccEEEeecCCCChhHHHhc----cCCCCCCEEEecCCCCC---hh-------hHHHHhcCCCCCEEECCCCCCC
Q 016017 176 LSGLTNLKSLQISCSKVTDSGIAYL----KGLQKLTLLNLEGCPVT---AA-------CLDSLSALGSLFYLNLNRCQLS 241 (396)
Q Consensus 176 l~~~~~L~~L~l~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~~---~~-------~~~~~~~~~~L~~L~l~~~~~~ 241 (396)
+..+..++.+++++|.+.......+ .+-.+|+..++++-... .. ....+..||.|+.++++.|.+.
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 3456788899999998887655444 44577888877764221 11 2334567899999999988766
Q ss_pred hHH----HHhhhcCCCCcEEEccCCcCcHHHHHHh-------------hCCCCCCEEeccCCCCChhHhH----HHhCCC
Q 016017 242 DDG----CEKFSKIGSLKVLNLGFNEITDECLVHL-------------KGLTNLESLNLDSCGIGDEGLV----NLTGLC 300 (396)
Q Consensus 242 ~~~----~~~l~~~~~L~~L~l~~~~~~~~~~~~l-------------~~~~~L~~L~l~~~~~~~~~~~----~~~~~~ 300 (396)
... .+.+++-+.|.+|.+++|.+.......+ ..-|.|+++...+|++...... .+..-.
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~ 185 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHE 185 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhc
Confidence 443 3455667789999998887653221111 2347888888888876542221 122224
Q ss_pred CccEEEcCCCCCCchhHHhh-----cCCCCCCEEeccCcccChhhhHhhh----CCCCCCEeecCCCCCcHHHHHHH---
Q 016017 301 NLKCLELSDTQVGSSGLRHL-----SGLTNLESINLSFTGISDGSLRKLA----GLSSLKSLNLDARQITDTGLAAL--- 368 (396)
Q Consensus 301 ~L~~L~l~~~~~~~~~~~~l-----~~~~~L~~L~l~~~~~~~~~~~~l~----~~~~L~~L~l~~~~l~~~~~~~l--- 368 (396)
.|+.+.+..|.|...+...+ ..+.+|+.|++.+|.++-.....++ .-+.|+.|.+..|.++..+...+
T Consensus 186 ~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~ 265 (388)
T COG5238 186 NLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRR 265 (388)
T ss_pred CceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHH
Confidence 78888888888876655443 4578888888888877665544443 34668888888887775554333
Q ss_pred -h--cCccCCeeecCCCccCh
Q 016017 369 -T--SLTGLTHLDLFGARITD 386 (396)
Q Consensus 369 -~--~~~~L~~l~l~~~~l~~ 386 (396)
. ..|+|..|...-|.+..
T Consensus 266 f~e~~~p~l~~L~~~Yne~~~ 286 (388)
T COG5238 266 FNEKFVPNLMPLPGDYNERRG 286 (388)
T ss_pred hhhhcCCCccccccchhhhcC
Confidence 1 24677777666664433
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.74 E-value=1.5e-09 Score=69.18 Aligned_cols=59 Identities=29% Similarity=0.411 Sum_probs=28.3
Q ss_pred CCCEEeccCcccChhhhHhhhCCCCCCEeecCCCCCcHHHHHHHhcCccCCeeecCCCc
Q 016017 325 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 383 (396)
Q Consensus 325 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~ 383 (396)
+|++|++++|.++......+..+++|+.|++++|.+....+..|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 44444454444444333444444555555555554444434444455555555555544
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.68 E-value=9.4e-09 Score=65.54 Aligned_cols=61 Identities=26% Similarity=0.405 Sum_probs=45.9
Q ss_pred CCccEEEcCCCCCCchhHHhhcCCCCCCEEeccCcccChhhhHhhhCCCCCCEeecCCCCC
Q 016017 300 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360 (396)
Q Consensus 300 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l 360 (396)
|+|++|++++|+++......+..+++|++|++++|.++...+..+..+++|+.|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4677777777777766666777778888888887777776666777788888888887764
No 41
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.63 E-value=1.3e-07 Score=89.87 Aligned_cols=151 Identities=21% Similarity=0.289 Sum_probs=77.9
Q ss_pred CCCCEEECCCCC-CChHHHHhhh-cCCCCcEEEccCCcCc-HHHHHHhhCCCCCCEEeccCCCCChhHhHHHhCCCCccE
Q 016017 228 GSLFYLNLNRCQ-LSDDGCEKFS-KIGSLKVLNLGFNEIT-DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 304 (396)
Q Consensus 228 ~~L~~L~l~~~~-~~~~~~~~l~-~~~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 304 (396)
.+|++|+++|.. +....+..++ -+|+|++|.+.+-.+. +.......++|+|..|+++++.+... ..++++++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 456666666643 1122222333 3566666666654432 22233345666666666666666543 34556666666
Q ss_pred EEcCCCCCCc-hhHHhhcCCCCCCEEeccCcccChh--hhHhh----hCCCCCCEeecCCCCCcHHHHHHH-hcCccCCe
Q 016017 305 LELSDTQVGS-SGLRHLSGLTNLESINLSFTGISDG--SLRKL----AGLSSLKSLNLDARQITDTGLAAL-TSLTGLTH 376 (396)
Q Consensus 305 L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~--~~~~l----~~~~~L~~L~l~~~~l~~~~~~~l-~~~~~L~~ 376 (396)
|.+.+-.+.. .....+-.+++|+.||++....... .+... ..+|.||.||.++..+.+...+.+ ...|+|+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~ 279 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQ 279 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhh
Confidence 6666655543 2334445566666666665422211 12211 135677777777666665544333 34455555
Q ss_pred eecC
Q 016017 377 LDLF 380 (396)
Q Consensus 377 l~l~ 380 (396)
+-..
T Consensus 280 i~~~ 283 (699)
T KOG3665|consen 280 IAAL 283 (699)
T ss_pred hhhh
Confidence 5433
No 42
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.62 E-value=3e-08 Score=81.06 Aligned_cols=207 Identities=17% Similarity=0.156 Sum_probs=116.5
Q ss_pred CCCeeeccCCcccChhHHHhhh-CCCCCcEEeccCCccccHHHHHH-HhCCCCCcEecccccccccCccccc-CCCCccc
Q 016017 82 NLQSLDFNFCIQISDGGLEHLR-GLSNLTSLSFRRNNAITAQGMKA-FAGLINLVKLDLERCTRIHGGLVNL-KGLMKLE 158 (396)
Q Consensus 82 ~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l-~~~~~L~ 158 (396)
.++.|.+.+|..-+......++ .+..++.+++.+|.......... +..+|+|+.|+++.|+.. .....+ ....+|+
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~-s~I~~lp~p~~nl~ 124 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLS-SDIKSLPLPLKNLR 124 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCC-CccccCcccccceE
Confidence 4455666666332333344443 56789999999987655554443 357999999999986533 333334 4667899
Q ss_pred EEecCCCCCccccccccccCCCCccEEEeecCCCChhH--HHhccC-CCCCCEEEecCCCCCh--hhHHHHhcCCCCCEE
Q 016017 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG--IAYLKG-LQKLTLLNLEGCPVTA--ACLDSLSALGSLFYL 233 (396)
Q Consensus 159 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~--~~~~~~-~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L 233 (396)
+|.+.+...........+..+|.++.|+++.|.+.... ...... .+.++++....|.... .....-..+|++..+
T Consensus 125 ~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv 204 (418)
T KOG2982|consen 125 VLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSV 204 (418)
T ss_pred EEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchhe
Confidence 99998865555555556667888888888877433211 011111 1344455555542211 111222345666666
Q ss_pred ECCCCCCChHH-HHhhhcCCCCcEEEccCCcCcHHH-HHHhhCCCCCCEEeccCCCCC
Q 016017 234 NLNRCQLSDDG-CEKFSKIGSLKVLNLGFNEITDEC-LVHLKGLTNLESLNLDSCGIG 289 (396)
Q Consensus 234 ~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~ 289 (396)
.+..+.+.... ......+|.+-.|.++.+.+.... ...+.+++.|..|.+.++.+.
T Consensus 205 ~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 205 FVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred eeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 66665443222 223334555556666665554332 234556666666666666554
No 43
>PLN03150 hypothetical protein; Provisional
Probab=98.60 E-value=9.1e-08 Score=91.02 Aligned_cols=105 Identities=23% Similarity=0.325 Sum_probs=69.7
Q ss_pred CCEEeccCCCCChhHhHHHhCCCCccEEEcCCCCCCchhHHhhcCCCCCCEEeccCcccChhhhHhhhCCCCCCEeecCC
Q 016017 278 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 357 (396)
Q Consensus 278 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 357 (396)
++.|++.++.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.++...+..++++++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 55667777766665566666777777777777777665556666677777777777777666666667777777777777
Q ss_pred CCCcHHHHHHHhcC-ccCCeeecCCC
Q 016017 358 RQITDTGLAALTSL-TGLTHLDLFGA 382 (396)
Q Consensus 358 ~~l~~~~~~~l~~~-~~L~~l~l~~~ 382 (396)
|.+.+..+..+... .++..+++.+|
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred CcccccCChHHhhccccCceEEecCC
Confidence 77666555555432 34556666655
No 44
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.57 E-value=1e-07 Score=89.04 Aligned_cols=61 Identities=36% Similarity=0.449 Sum_probs=25.7
Q ss_pred CCCccEEEeecCC-CChhHHHhcc-CCCCCCEEEecCCC-CChhhHHH-HhcCCCCCEEECCCCC
Q 016017 179 LTNLKSLQISCSK-VTDSGIAYLK-GLQKLTLLNLEGCP-VTAACLDS-LSALGSLFYLNLNRCQ 239 (396)
Q Consensus 179 ~~~L~~L~l~~~~-~~~~~~~~~~-~~~~L~~L~l~~~~-~~~~~~~~-~~~~~~L~~L~l~~~~ 239 (396)
+++|+.++++++. +++.....+. .|++|+.|.+.+|. ++...... ...+++|++|++++|.
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 3445555554443 4443333332 24455555544443 23222222 2234455555555443
No 45
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.57 E-value=3.7e-07 Score=86.77 Aligned_cols=201 Identities=18% Similarity=0.186 Sum_probs=129.3
Q ss_pred CCccEEEeecCCCChhHHHhccCCCCCCEEEecCCCCChhhHHHHhcCCCCCEEECCCCCCChHHHHhhh--cCCCCcEE
Q 016017 180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS--KIGSLKVL 257 (396)
Q Consensus 180 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~--~~~~L~~L 257 (396)
-+++..++.+..........+.... |+.+.+++.......... . ..++ +.......+. .-.+|+.|
T Consensus 60 f~ltki~l~~~~~~~~~~~~l~~~~-L~sl~LGnl~~~k~~~~~----~--~~id-----i~~lL~~~Ln~~sr~nL~~L 127 (699)
T KOG3665|consen 60 FNLTKIDLKNVTLQHQTLEMLRKQD-LESLKLGNLDKIKQDYLD----D--ATID-----IISLLKDLLNEESRQNLQHL 127 (699)
T ss_pred heeEEeeccceecchhHHHHHhhcc-ccccCCcchHhhhhhhhh----h--hhcc-----HHHHHHHHHhHHHHHhhhhc
Confidence 4566666666655555444444444 777766654322210000 0 1111 1111111221 23579999
Q ss_pred EccCCcC-cHHHHHHhh-CCCCCCEEeccCCCCChh-HhHHHhCCCCccEEEcCCCCCCchhHHhhcCCCCCCEEeccCc
Q 016017 258 NLGFNEI-TDECLVHLK-GLTNLESLNLDSCGIGDE-GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 334 (396)
Q Consensus 258 ~l~~~~~-~~~~~~~l~-~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 334 (396)
++++... ....+..++ -+|+|++|.+.+-.+... ......++|+|..|++++++++.. ..++.+++|+.|.+.+-
T Consensus 128 dI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnL 205 (699)
T KOG3665|consen 128 DISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNL 205 (699)
T ss_pred CccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCC
Confidence 9988543 222233343 569999999999877543 334446799999999999999764 66778999999999988
Q ss_pred ccCh-hhhHhhhCCCCCCEeecCCCCCcH---HHHHHH---hcCccCCeeecCCCccChHHHHHHHh
Q 016017 335 GISD-GSLRKLAGLSSLKSLNLDARQITD---TGLAAL---TSLTGLTHLDLFGARITDSGAAYLRS 394 (396)
Q Consensus 335 ~~~~-~~~~~l~~~~~L~~L~l~~~~l~~---~~~~~l---~~~~~L~~l~l~~~~l~~~~~~~l~~ 394 (396)
.+.. .....+.++++|+.||++..+-.. .....+ ..+|+|+.||.++..+++..++.+-+
T Consensus 206 e~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~ 272 (699)
T KOG3665|consen 206 EFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLN 272 (699)
T ss_pred CCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHH
Confidence 7765 456667889999999999743332 222222 35899999999999999988876643
No 46
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.53 E-value=1.3e-07 Score=88.39 Aligned_cols=237 Identities=30% Similarity=0.314 Sum_probs=128.8
Q ss_pred hCCCCCcEEeccCCccccHHH-HHHHhCCCCCcEeccccc-ccccCcc----cccCCCCcccEEecCCCCCccccccccc
Q 016017 103 RGLSNLTSLSFRRNNAITAQG-MKAFAGLINLVKLDLERC-TRIHGGL----VNLKGLMKLESLNIKWCNCITDSDMKPL 176 (396)
Q Consensus 103 ~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~-~~~~~~~----~~l~~~~~L~~L~l~~~~~~~~~~~~~l 176 (396)
..++.|+.+.+.++..+.... ......+++|+.|+++++ ....... .....+++|+.+++..+..+++.....+
T Consensus 185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 456788888888776655533 234457888888888763 2111111 1235567888888888776776666666
Q ss_pred cC-CCCccEEEeecCC-CChhHHHhc-cCCCCCCEEEecCCCCC-h-hhHHHHhcCCCCCEEECCCCCCChHHHHhhhcC
Q 016017 177 SG-LTNLKSLQISCSK-VTDSGIAYL-KGLQKLTLLNLEGCPVT-A-ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI 251 (396)
Q Consensus 177 ~~-~~~L~~L~l~~~~-~~~~~~~~~-~~~~~L~~L~l~~~~~~-~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~ 251 (396)
.. +++|++|.+..|. +++.....+ ..++.|+.|++++|... . ........+++++.+.+..... +
T Consensus 265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~----------c 334 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG----------C 334 (482)
T ss_pred HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC----------C
Confidence 64 7899999877776 676665555 56788999999988442 2 2333344577777765544321 2
Q ss_pred CCCcEEEccCCcC---cHHHHHHhhCCCCCCEEeccCCCCChhH-hHHHhCCCCccEEEcCCCCCCchhHHhhcCCCCCC
Q 016017 252 GSLKVLNLGFNEI---TDECLVHLKGLTNLESLNLDSCGIGDEG-LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 327 (396)
Q Consensus 252 ~~L~~L~l~~~~~---~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 327 (396)
+.++.+.+..... ..........+++++.+.+..+...+.+ ...+..++.|. ..+ ......+..++
T Consensus 335 ~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l---------~~~~~~~~~l~ 404 (482)
T KOG1947|consen 335 PSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESL---------ELRLCRSDSLR 404 (482)
T ss_pred ccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHH---------HHHhccCCccc
Confidence 3333333332211 1112233456667776666666533332 12233344331 111 01111222366
Q ss_pred EEeccCc-ccChhhhHhhhC-CCCCCEeecCCCC
Q 016017 328 SINLSFT-GISDGSLRKLAG-LSSLKSLNLDARQ 359 (396)
Q Consensus 328 ~L~l~~~-~~~~~~~~~l~~-~~~L~~L~l~~~~ 359 (396)
.|++..| ..++........ +..++.+++.++.
T Consensus 405 ~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~ 438 (482)
T KOG1947|consen 405 VLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCR 438 (482)
T ss_pred eEecccCccccccchHHHhhhhhccccCCccCcc
Confidence 6666665 233333333332 5556666666543
No 47
>PLN03150 hypothetical protein; Provisional
Probab=98.48 E-value=3.5e-07 Score=87.11 Aligned_cols=106 Identities=25% Similarity=0.251 Sum_probs=77.1
Q ss_pred CcEEEccCCcCcHHHHHHhhCCCCCCEEeccCCCCChhHhHHHhCCCCccEEEcCCCCCCchhHHhhcCCCCCCEEeccC
Q 016017 254 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333 (396)
Q Consensus 254 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 333 (396)
++.|+++++.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|++++..+..+..+++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 66777777777666666777778888888888877766666777778888888888877777777777778888888888
Q ss_pred cccChhhhHhhhC-CCCCCEeecCCCC
Q 016017 334 TGISDGSLRKLAG-LSSLKSLNLDARQ 359 (396)
Q Consensus 334 ~~~~~~~~~~l~~-~~~L~~L~l~~~~ 359 (396)
|.++...+..+.. ..++..+++.+|.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCc
Confidence 8777666666654 2455666666654
No 48
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.42 E-value=2.4e-07 Score=75.89 Aligned_cols=232 Identities=19% Similarity=0.196 Sum_probs=147.3
Q ss_pred CcccEEecCCCCCcccccccccc-CCCCccEEEeecCCCCh--hHHHhccCCCCCCEEEecCCCCChhhHHHHhcCCCCC
Q 016017 155 MKLESLNIKWCNCITDSDMKPLS-GLTNLKSLQISCSKVTD--SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231 (396)
Q Consensus 155 ~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 231 (396)
..++.+.+.++..-+......++ .+..++.+++.+|.+++ +....+.++|.|+.|+++.|++.......-....+|+
T Consensus 45 ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~ 124 (418)
T KOG2982|consen 45 RALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLR 124 (418)
T ss_pred cchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceE
Confidence 34556666665543333333343 56889999999998876 3345558899999999999887654322223557889
Q ss_pred EEECCCCCCChHHH-HhhhcCCCCcEEEccCCcCcHHHH--HHhhC-CCCCCEEeccCCCCCh--hHhHHHhCCCCccEE
Q 016017 232 YLNLNRCQLSDDGC-EKFSKIGSLKVLNLGFNEITDECL--VHLKG-LTNLESLNLDSCGIGD--EGLVNLTGLCNLKCL 305 (396)
Q Consensus 232 ~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~--~~l~~-~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L 305 (396)
.+-+.+..+.-... ..+..+|.++.|.++.|.+..... ..... -+.++++++.+|.... .....-..+|++..+
T Consensus 125 ~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv 204 (418)
T KOG2982|consen 125 VLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSV 204 (418)
T ss_pred EEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchhe
Confidence 99998877553332 345678888888888774332110 11112 2467777777774321 111112246899999
Q ss_pred EcCCCCCCchhH-HhhcCCCCCCEEeccCcccChhh-hHhhhCCCCCCEeecCCCCCcHHHHH------HHhcCccCCee
Q 016017 306 ELSDTQVGSSGL-RHLSGLTNLESINLSFTGISDGS-LRKLAGLSSLKSLNLDARQITDTGLA------ALTSLTGLTHL 377 (396)
Q Consensus 306 ~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~l~~~~~~------~l~~~~~L~~l 377 (396)
.+..|.+.+... .....+|.+.-|.++.+++.++. ..++..++.|+.|.+..+++.+.... .++.+++++.|
T Consensus 205 ~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vL 284 (418)
T KOG2982|consen 205 FVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVL 284 (418)
T ss_pred eeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEe
Confidence 999998765433 34456788888999999888754 45667899999999999988764221 22445555555
Q ss_pred ecCCCccChHH
Q 016017 378 DLFGARITDSG 388 (396)
Q Consensus 378 ~l~~~~l~~~~ 388 (396)
+ |.+|+...
T Consensus 285 N--GskIss~e 293 (418)
T KOG2982|consen 285 N--GSKISSRE 293 (418)
T ss_pred c--Ccccchhh
Confidence 3 33666544
No 49
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.42 E-value=3.1e-07 Score=83.34 Aligned_cols=179 Identities=32% Similarity=0.376 Sum_probs=104.9
Q ss_pred cCCCCccEEEeecCCCChhHHHhccCC-CCCCEEEecCCCCChhhHHHHhcCCCCCEEECCCCCCChHHHHhhhcCCCCc
Q 016017 177 SGLTNLKSLQISCSKVTDSGIAYLKGL-QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255 (396)
Q Consensus 177 ~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 255 (396)
...+.++.+++.++.++.... ..... ++|+.|+++++.+... +..+..+++|+.|+++.|.+.+... .....+.|+
T Consensus 113 ~~~~~l~~L~l~~n~i~~i~~-~~~~~~~nL~~L~l~~N~i~~l-~~~~~~l~~L~~L~l~~N~l~~l~~-~~~~~~~L~ 189 (394)
T COG4886 113 LELTNLTSLDLDNNNITDIPP-LIGLLKSNLKELDLSDNKIESL-PSPLRNLPNLKNLDLSFNDLSDLPK-LLSNLSNLN 189 (394)
T ss_pred hcccceeEEecCCcccccCcc-ccccchhhcccccccccchhhh-hhhhhccccccccccCCchhhhhhh-hhhhhhhhh
Confidence 344667777777776665322 22333 2677777777766552 2455667777777777776654432 222566677
Q ss_pred EEEccCCcCcHHHHHHhhCCCCCCEEeccCCCCChhHhHHHhCCCCccEEEcCCCCCCchhHHhhcCCCCCCEEeccCcc
Q 016017 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 335 (396)
Q Consensus 256 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 335 (396)
.|+++++.+... +........|+++.+.++... ..+..+.+...+..+.+.++.+... ...+..+++++.|++++|.
T Consensus 190 ~L~ls~N~i~~l-~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~-~~~~~~l~~l~~L~~s~n~ 266 (394)
T COG4886 190 NLDLSGNKISDL-PPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDL-PESIGNLSNLETLDLSNNQ 266 (394)
T ss_pred heeccCCccccC-chhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeec-cchhccccccceecccccc
Confidence 777777766543 222234445777777776422 1233445556666666666655432 3344556667777777776
Q ss_pred cChhhhHhhhCCCCCCEeecCCCCCcHH
Q 016017 336 ISDGSLRKLAGLSSLKSLNLDARQITDT 363 (396)
Q Consensus 336 ~~~~~~~~l~~~~~L~~L~l~~~~l~~~ 363 (396)
+++... ++...+++.|+++++.+...
T Consensus 267 i~~i~~--~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 267 ISSISS--LGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred cccccc--ccccCccCEEeccCcccccc
Confidence 665333 55666777777777666544
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.40 E-value=1.3e-08 Score=93.03 Aligned_cols=127 Identities=29% Similarity=0.307 Sum_probs=58.0
Q ss_pred CcEEEccCCcCcHHHHHHhhCCCCCCEEeccCCCCChhHhHHHhCCCCccEEEcCCCCCCchhHHhhcCCCCCCEEeccC
Q 016017 254 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333 (396)
Q Consensus 254 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 333 (396)
|.+.+++.|.+... ...+.-++.++.|++++|.+... ..+..++.|++|+|+.|.+....--.-.+|. |+.|.+++
T Consensus 166 L~~a~fsyN~L~~m-D~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrn 241 (1096)
T KOG1859|consen 166 LATASFSYNRLVLM-DESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRN 241 (1096)
T ss_pred HhhhhcchhhHHhH-HHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeecc
Confidence 33444444443321 22334445555555555554432 2344455555555555544332211112333 55555555
Q ss_pred cccChhhhHhhhCCCCCCEeecCCCCCcHHH-HHHHhcCccCCeeecCCCccCh
Q 016017 334 TGISDGSLRKLAGLSSLKSLNLDARQITDTG-LAALTSLTGLTHLDLFGARITD 386 (396)
Q Consensus 334 ~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~-~~~l~~~~~L~~l~l~~~~l~~ 386 (396)
|.++. ...+.++.+|+.|++++|-+.+.. ..-+..+..|+.|+|.||++..
T Consensus 242 N~l~t--L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 242 NALTT--LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred cHHHh--hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 55443 333445555555555555444321 1333444555555666555543
No 51
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.33 E-value=4.9e-07 Score=82.02 Aligned_cols=183 Identities=31% Similarity=0.344 Sum_probs=125.3
Q ss_pred cCCCCcccEEecCCCCCccccccccccCC-CCccEEEeecCCCChhHHHhccCCCCCCEEEecCCCCChhhHHHHhcCCC
Q 016017 151 LKGLMKLESLNIKWCNCITDSDMKPLSGL-TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 229 (396)
Q Consensus 151 l~~~~~L~~L~l~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 229 (396)
+...+.++.+++.+. .++. ........ ++|+.|+++++.+.... ..+..+++|+.|++++|++... +......+.
T Consensus 112 ~~~~~~l~~L~l~~n-~i~~-i~~~~~~~~~nL~~L~l~~N~i~~l~-~~~~~l~~L~~L~l~~N~l~~l-~~~~~~~~~ 187 (394)
T COG4886 112 LLELTNLTSLDLDNN-NITD-IPPLIGLLKSNLKELDLSDNKIESLP-SPLRNLPNLKNLDLSFNDLSDL-PKLLSNLSN 187 (394)
T ss_pred hhcccceeEEecCCc-cccc-Cccccccchhhcccccccccchhhhh-hhhhccccccccccCCchhhhh-hhhhhhhhh
Confidence 445577888888773 3332 22333344 38899999988887542 4567888999999999888763 333347788
Q ss_pred CCEEECCCCCCChHHHHhhhcCCCCcEEEccCCcCcHHHHHHhhCCCCCCEEeccCCCCChhHhHHHhCCCCccEEEcCC
Q 016017 230 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 309 (396)
Q Consensus 230 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 309 (396)
|+.++++++.+..... .......|+++.++++..... +..+....++..+.+.++.+... +..+..++.++.|++++
T Consensus 188 L~~L~ls~N~i~~l~~-~~~~~~~L~~l~~~~N~~~~~-~~~~~~~~~l~~l~l~~n~~~~~-~~~~~~l~~l~~L~~s~ 264 (394)
T COG4886 188 LNNLDLSGNKISDLPP-EIELLSALEELDLSNNSIIEL-LSSLSNLKNLSGLELSNNKLEDL-PESIGNLSNLETLDLSN 264 (394)
T ss_pred hhheeccCCccccCch-hhhhhhhhhhhhhcCCcceec-chhhhhcccccccccCCceeeec-cchhccccccceecccc
Confidence 8999999888765442 223445588888888843222 34566777788787777766542 44566777899999999
Q ss_pred CCCCchhHHhhcCCCCCCEEeccCcccChhhhH
Q 016017 310 TQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 342 (396)
Q Consensus 310 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 342 (396)
|.++.... +....+++.|+++++.+....+.
T Consensus 265 n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 265 NQISSISS--LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred cccccccc--ccccCccCEEeccCccccccchh
Confidence 88876544 67778899999988877654443
No 52
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.32 E-value=3.3e-08 Score=89.80 Aligned_cols=197 Identities=31% Similarity=0.363 Sum_probs=108.9
Q ss_pred ccCCCCccEEEeecCCCChhHHHhccCCCCCCEEEecCCCCChhhHHHHhcCCCCCEEECCCCCCChHHHHhhhcCCCCc
Q 016017 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255 (396)
Q Consensus 176 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 255 (396)
+..+.+|+.+++.+|.+..... .+..+++|+.|++++|.+... ..+..++.|+.|++.+|.+... ..+..++.|+
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~ 165 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLISDI--SGLESLKSLK 165 (414)
T ss_pred cccccceeeeeccccchhhccc-chhhhhcchheeccccccccc--cchhhccchhhheeccCcchhc--cCCccchhhh
Confidence 5566777777777776665321 155667777777777766552 3344555677777777765432 2334466667
Q ss_pred EEEccCCcCcHHHH-HHhhCCCCCCEEeccCCCCChhHhHHHhCCCCccEEEcCCCCCCchhHHhhcCCCC--CCEEecc
Q 016017 256 VLNLGFNEITDECL-VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN--LESINLS 332 (396)
Q Consensus 256 ~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~--L~~L~l~ 332 (396)
.++++++.+..... . ...+.+++.+.+.++.+.... .+.....+..+.+..+.++.. ..+...+. |+.+++.
T Consensus 166 ~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~--~~~~~~~l~~~~l~~n~i~~~--~~l~~~~~~~L~~l~l~ 240 (414)
T KOG0531|consen 166 LLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIE--GLDLLKKLVLLSLLDNKISKL--EGLNELVMLHLRELYLS 240 (414)
T ss_pred cccCCcchhhhhhhhh-hhhccchHHHhccCCchhccc--chHHHHHHHHhhcccccceec--cCcccchhHHHHHHhcc
Confidence 77777666654332 1 355666666666666554321 111122333335555544331 11112222 6777777
Q ss_pred CcccChhhhHhhhCCCCCCEeecCCCCCcHHHHHHHhcCccCCeeecCCCccC
Q 016017 333 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385 (396)
Q Consensus 333 ~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~l~ 385 (396)
++.+.... ..+..+..+..+++.++++.. ...+...+.+..+....+.+.
T Consensus 241 ~n~i~~~~-~~~~~~~~l~~l~~~~n~~~~--~~~~~~~~~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 241 GNRISRSP-EGLENLKNLPVLDLSSNRISN--LEGLERLPKLSELWLNDNKLA 290 (414)
T ss_pred cCcccccc-ccccccccccccchhhccccc--cccccccchHHHhccCcchhc
Confidence 77665421 344556777777777776665 234445555666666666554
No 53
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.25 E-value=2e-08 Score=89.14 Aligned_cols=191 Identities=18% Similarity=0.153 Sum_probs=116.9
Q ss_pred EEEeecCCCChhHHHhccCCCCCCEEEecCCCCChhhHHHHhcCCCCCEEECCCCCCChHHHHhhhcCCCCcEEEccCCc
Q 016017 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE 263 (396)
Q Consensus 184 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 263 (396)
..+++.|.+... +..+..+..|+.+.+..+.+.. .+..+..+..|.+++++.|++... +..++.++ |+.|.+++|+
T Consensus 79 ~aDlsrNR~~el-p~~~~~f~~Le~liLy~n~~r~-ip~~i~~L~~lt~l~ls~NqlS~l-p~~lC~lp-Lkvli~sNNk 154 (722)
T KOG0532|consen 79 FADLSRNRFSEL-PEEACAFVSLESLILYHNCIRT-IPEAICNLEALTFLDLSSNQLSHL-PDGLCDLP-LKVLIVSNNK 154 (722)
T ss_pred hhhccccccccC-chHHHHHHHHHHHHHHhcccee-cchhhhhhhHHHHhhhccchhhcC-ChhhhcCc-ceeEEEecCc
Confidence 344555544432 2223334455555555554433 255666777777777777765432 34455565 7777777777
Q ss_pred CcHHHHHHhhCCCCCCEEeccCCCCChhHhHHHhCCCCccEEEcCCCCCCchhHHhhcCCCCCCEEeccCcccChhhhHh
Q 016017 264 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343 (396)
Q Consensus 264 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 343 (396)
++.. +..++..+.|..|+.+.|.+... +..++++.+|+.|.+..|++.....+ +. +=.|..||++.|++.. ++..
T Consensus 155 l~~l-p~~ig~~~tl~~ld~s~nei~sl-psql~~l~slr~l~vrRn~l~~lp~E-l~-~LpLi~lDfScNkis~-iPv~ 229 (722)
T KOG0532|consen 155 LTSL-PEEIGLLPTLAHLDVSKNEIQSL-PSQLGYLTSLRDLNVRRNHLEDLPEE-LC-SLPLIRLDFSCNKISY-LPVD 229 (722)
T ss_pred cccC-CcccccchhHHHhhhhhhhhhhc-hHHhhhHHHHHHHHHhhhhhhhCCHH-Hh-CCceeeeecccCceee-cchh
Confidence 6543 45566667777777777766543 44556666777777777766543322 33 3347778888887766 5667
Q ss_pred hhCCCCCCEeecCCCCCcHHHHHHH--hcCccCCeeecCCCc
Q 016017 344 LAGLSSLKSLNLDARQITDTGLAAL--TSLTGLTHLDLFGAR 383 (396)
Q Consensus 344 l~~~~~L~~L~l~~~~l~~~~~~~l--~~~~~L~~l~l~~~~ 383 (396)
|..|..|++|-|.+|.+....++.. +...-.++|++..|+
T Consensus 230 fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 230 FRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred hhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhcc
Confidence 7788888888888888776533322 345556777777663
No 54
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.23 E-value=4.1e-08 Score=89.79 Aligned_cols=126 Identities=26% Similarity=0.338 Sum_probs=80.3
Q ss_pred CCEEECCCCCCChHHHHhhhcCCCCcEEEccCCcCcHHHHHHhhCCCCCCEEeccCCCCChhHhHHHhCCCCccEEEcCC
Q 016017 230 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 309 (396)
Q Consensus 230 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 309 (396)
|...+++.|.+.. ....+.-++.+++|++++|++... ..+..++.|++|+++.|.+...+-.....+ .|..|.+++
T Consensus 166 L~~a~fsyN~L~~-mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrn 241 (1096)
T KOG1859|consen 166 LATASFSYNRLVL-MDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRN 241 (1096)
T ss_pred HhhhhcchhhHHh-HHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhh-hheeeeecc
Confidence 4444555444321 112344566788888888887764 367788888888888887654322222233 488888888
Q ss_pred CCCCchhHHhhcCCCCCCEEeccCcccChh-hhHhhhCCCCCCEeecCCCCCc
Q 016017 310 TQVGSSGLRHLSGLTNLESINLSFTGISDG-SLRKLAGLSSLKSLNLDARQIT 361 (396)
Q Consensus 310 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~l~ 361 (396)
|.++. ...+.++++|+.||+++|-+.+. ...-+..+..|+.|.|.||++-
T Consensus 242 N~l~t--L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 242 NALTT--LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred cHHHh--hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 87754 44556778888888888855442 1222345677888888888765
No 55
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.13 E-value=1.1e-06 Score=63.57 Aligned_cols=82 Identities=24% Similarity=0.261 Sum_probs=35.3
Q ss_pred CccEEEcCCCCCCchhHHhhcCCCCCCEEeccCcccChhhhHhhhCCCCCCEeecCCCCCcHHHHHHHhcCccCCeeecC
Q 016017 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 380 (396)
Q Consensus 301 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~ 380 (396)
.|...++++|.+.+....+-..+|.++.+++++|.+.+ .|..++.+|.|+.|++++|++... ++.+..+.+|-.|+..
T Consensus 54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisd-vPeE~Aam~aLr~lNl~~N~l~~~-p~vi~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISD-VPEELAAMPALRSLNLRFNPLNAE-PRVIAPLIKLDMLDSP 131 (177)
T ss_pred eEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhh-chHHHhhhHHhhhcccccCccccc-hHHHHHHHhHHHhcCC
Confidence 34444444444433333333334444444444444444 233344444444455544444433 3333334444444444
Q ss_pred CCcc
Q 016017 381 GARI 384 (396)
Q Consensus 381 ~~~l 384 (396)
+|.+
T Consensus 132 ~na~ 135 (177)
T KOG4579|consen 132 ENAR 135 (177)
T ss_pred CCcc
Confidence 4433
No 56
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.13 E-value=2.1e-07 Score=84.57 Aligned_cols=241 Identities=31% Similarity=0.330 Sum_probs=158.1
Q ss_pred CCCCcEecccccccccCcccccCCCCcccEEecCCCCCcccccccc-ccCCCCccEEEeecCCCChhHHHhccCCCCCCE
Q 016017 130 LINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP-LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTL 208 (396)
Q Consensus 130 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 208 (396)
+..++.+.+..+.. ......+..+.+|+.+++.+ +.+.. ... +..+++|++|++++|.++.. ..+..++.|+.
T Consensus 71 l~~l~~l~l~~n~i-~~~~~~l~~~~~l~~l~l~~-n~i~~--i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~ 144 (414)
T KOG0531|consen 71 LTSLKELNLRQNLI-AKILNHLSKLKSLEALDLYD-NKIEK--IENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKE 144 (414)
T ss_pred hHhHHhhccchhhh-hhhhcccccccceeeeeccc-cchhh--cccchhhhhcchheeccccccccc--cchhhccchhh
Confidence 34444444444321 12223367789999999998 44443 233 67789999999999998874 34566777999
Q ss_pred EEecCCCCChhhHHHHhcCCCCCEEECCCCCCChHHH-HhhhcCCCCcEEEccCCcCcHHHHHHhhCCCCCCEEeccCCC
Q 016017 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC-EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287 (396)
Q Consensus 209 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 287 (396)
|++++|.+.. ...+..++.|+.++++++.+..... . ...+.+++.+.+.++.+... ..+..+..+..+++..+.
T Consensus 145 L~l~~N~i~~--~~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~ 219 (414)
T KOG0531|consen 145 LNLSGNLISD--ISGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNK 219 (414)
T ss_pred heeccCcchh--ccCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhccccc
Confidence 9999998876 3344558999999999998776543 2 57788999999998876542 222233334444666665
Q ss_pred CChhHhHHHhCCC--CccEEEcCCCCCCchhHHhhcCCCCCCEEeccCcccChhhhHhhhCCCCCCEeecCCCCCcHHH-
Q 016017 288 IGDEGLVNLTGLC--NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG- 364 (396)
Q Consensus 288 ~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~- 364 (396)
+.... .+.... .|+.+++.++++.... ..+..++.+..|++.++.+.. ...+...+.+..+....+.+....
T Consensus 220 i~~~~--~l~~~~~~~L~~l~l~~n~i~~~~-~~~~~~~~l~~l~~~~n~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (414)
T KOG0531|consen 220 ISKLE--GLNELVMLHLRELYLSGNRISRSP-EGLENLKNLPVLDLSSNRISN--LEGLERLPKLSELWLNDNKLALSEA 294 (414)
T ss_pred ceecc--CcccchhHHHHHHhcccCcccccc-ccccccccccccchhhccccc--cccccccchHHHhccCcchhcchhh
Confidence 54321 111222 3889999999886532 456677889999999887664 222344566677777777655321
Q ss_pred --HH-HHhcCccCCeeecCCCccCh
Q 016017 365 --LA-ALTSLTGLTHLDLFGARITD 386 (396)
Q Consensus 365 --~~-~l~~~~~L~~l~l~~~~l~~ 386 (396)
.. .....+.+..+.+.++.+..
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (414)
T KOG0531|consen 295 ISQEYITSAAPTLVTLTLELNPIRK 319 (414)
T ss_pred hhccccccccccccccccccCcccc
Confidence 11 14567888889888886554
No 57
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.90 E-value=2.6e-07 Score=82.38 Aligned_cols=177 Identities=19% Similarity=0.167 Sum_probs=130.8
Q ss_pred CCCEEEecCCCCChhhHHHHhcCCCCCEEECCCCCCChHHHHhhhcCCCCcEEEccCCcCcHHHHHHhhCCCCCCEEecc
Q 016017 205 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284 (396)
Q Consensus 205 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 284 (396)
.-...+++.|++.. .+..+..+..|+.+.+..|.+.. .+..++.+..|..++++.|.+... +..+..+ -|+.|-++
T Consensus 76 dt~~aDlsrNR~~e-lp~~~~~f~~Le~liLy~n~~r~-ip~~i~~L~~lt~l~ls~NqlS~l-p~~lC~l-pLkvli~s 151 (722)
T KOG0532|consen 76 DTVFADLSRNRFSE-LPEEACAFVSLESLILYHNCIRT-IPEAICNLEALTFLDLSSNQLSHL-PDGLCDL-PLKVLIVS 151 (722)
T ss_pred chhhhhcccccccc-CchHHHHHHHHHHHHHHhcccee-cchhhhhhhHHHHhhhccchhhcC-ChhhhcC-cceeEEEe
Confidence 33455677776654 35556666677777777666543 234667788899999998877643 4444444 68888888
Q ss_pred CCCCChhHhHHHhCCCCccEEEcCCCCCCchhHHhhcCCCCCCEEeccCcccChhhhHhhhCCCCCCEeecCCCCCcHHH
Q 016017 285 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 364 (396)
Q Consensus 285 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~ 364 (396)
+|+++- .++.++..++|..|+.+.|.+... +..+..+.+|+.|.+..|.+.+ .+..+. .-.|.+||+++|++..+
T Consensus 152 NNkl~~-lp~~ig~~~tl~~ld~s~nei~sl-psql~~l~slr~l~vrRn~l~~-lp~El~-~LpLi~lDfScNkis~i- 226 (722)
T KOG0532|consen 152 NNKLTS-LPEEIGLLPTLAHLDVSKNEIQSL-PSQLGYLTSLRDLNVRRNHLED-LPEELC-SLPLIRLDFSCNKISYL- 226 (722)
T ss_pred cCcccc-CCcccccchhHHHhhhhhhhhhhc-hHHhhhHHHHHHHHHhhhhhhh-CCHHHh-CCceeeeecccCceeec-
Confidence 888763 455666778999999999987543 4556778899999999998876 455555 56789999999999977
Q ss_pred HHHHhcCccCCeeecCCCccChHHHH
Q 016017 365 LAALTSLTGLTHLDLFGARITDSGAA 390 (396)
Q Consensus 365 ~~~l~~~~~L~~l~l~~~~l~~~~~~ 390 (396)
|..|.++..|++|.|.+|.+..-++.
T Consensus 227 Pv~fr~m~~Lq~l~LenNPLqSPPAq 252 (722)
T KOG0532|consen 227 PVDFRKMRHLQVLQLENNPLQSPPAQ 252 (722)
T ss_pred chhhhhhhhheeeeeccCCCCCChHH
Confidence 77889999999999999998765544
No 58
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.88 E-value=9.4e-06 Score=47.21 Aligned_cols=36 Identities=39% Similarity=0.539 Sum_probs=18.3
Q ss_pred CCCEEeccCcccChhhhHhhhCCCCCCEeecCCCCCc
Q 016017 325 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 361 (396)
Q Consensus 325 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~ 361 (396)
+|++|++++|++++. +..++++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~~l-~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITDL-PPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SSH-GGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCccc-CchHhCCCCCCEEEecCCCCC
Confidence 455555555555542 233555555555555555554
No 59
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.86 E-value=1e-05 Score=62.79 Aligned_cols=85 Identities=32% Similarity=0.425 Sum_probs=73.7
Q ss_pred CccEEEeecCCCChHHHHHhhCCCCCCeeeccCCcccChhHHHhhhC-CCCCcEEeccCCccccHHHHHHHhCCCCCcEe
Q 016017 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRG-LSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136 (396)
Q Consensus 58 ~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 136 (396)
.++.++=+++.|..+..+.+.+++.++.|.+.+|..+.+.....+++ .++|+.|++++|..++..+...+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 45666667788888899999999999999999999999988888865 47899999999999999999999999999999
Q ss_pred cccccc
Q 016017 137 DLERCT 142 (396)
Q Consensus 137 ~l~~~~ 142 (396)
.+.+-+
T Consensus 182 ~l~~l~ 187 (221)
T KOG3864|consen 182 HLYDLP 187 (221)
T ss_pred HhcCch
Confidence 888743
No 60
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.76 E-value=5.2e-05 Score=44.06 Aligned_cols=37 Identities=38% Similarity=0.531 Sum_probs=18.6
Q ss_pred CCCEeecCCCCCcHHHHHHHhcCccCCeeecCCCccCh
Q 016017 349 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386 (396)
Q Consensus 349 ~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~l~~ 386 (396)
+|+.|++++|++++. +..+.++++|+.|++++|+|++
T Consensus 2 ~L~~L~l~~N~i~~l-~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQITDL-PPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-SSH-GGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCccc-CchHhCCCCCCEEEecCCCCCC
Confidence 455555555555543 2235555555555555555553
No 61
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.64 E-value=3.4e-05 Score=60.04 Aligned_cols=81 Identities=30% Similarity=0.387 Sum_probs=61.9
Q ss_pred CCCEEeccCCCCChhHhHHHhCCCCccEEEcCCC-CCCchhHHhhc-CCCCCCEEeccCc-ccChhhhHhhhCCCCCCEe
Q 016017 277 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT-QVGSSGLRHLS-GLTNLESINLSFT-GISDGSLRKLAGLSSLKSL 353 (396)
Q Consensus 277 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~-~~~~L~~L~l~~~-~~~~~~~~~l~~~~~L~~L 353 (396)
.++.++-+++.+..++.+.+..++.++.|.+.+| .+.+.....+. -.++|+.|++++| .|++.+...+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 4566777777777788888888888888888888 45665566553 3578888888888 7888888888888888888
Q ss_pred ecCC
Q 016017 354 NLDA 357 (396)
Q Consensus 354 ~l~~ 357 (396)
.+.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 8876
No 62
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.60 E-value=9e-06 Score=66.30 Aligned_cols=99 Identities=30% Similarity=0.352 Sum_probs=61.4
Q ss_pred CCCCEEeccCCCCChhHhHHHhCCCCccEEEcCCCCCCchhHHhhcCCCCCCEEeccCcccChhh-hHhhhCCCCCCEee
Q 016017 276 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS-LRKLAGLSSLKSLN 354 (396)
Q Consensus 276 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~ 354 (396)
.+.++|+..||.+.+.. ...+++.|+.|.|+-|.|+. ...+..|.+|++|+|..|.|.+.. ...+.++|+|+.|.
T Consensus 19 ~~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIss--L~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKISS--LAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHhhhhcccCCCccHHH--HHHhcccceeEEeecccccc--chhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 45666777777776532 23467777777777777754 445567777777777777766532 33345777777777
Q ss_pred cCCCCCcHHH-----HHHHhcCccCCeee
Q 016017 355 LDARQITDTG-----LAALTSLTGLTHLD 378 (396)
Q Consensus 355 l~~~~l~~~~-----~~~l~~~~~L~~l~ 378 (396)
|..|.-.+.. ...+.-+|+|++||
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhcc
Confidence 7665433211 13445567777664
No 63
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.56 E-value=7.3e-05 Score=58.19 Aligned_cols=105 Identities=22% Similarity=0.167 Sum_probs=61.6
Q ss_pred CCCCEEECCCCCCChHHHHhhhcCCCCcEEEccCCcCcHHHHHHhhCCCCCCEEeccCCCCChh-HhHHHhCCCCccEEE
Q 016017 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE-GLVNLTGLCNLKCLE 306 (396)
Q Consensus 228 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~ 306 (396)
.+...+++++|++... ..+..++.|.+|.+.+|.++...+..-..+|+|+.|.+.+|.+... ....+..||.|++|.
T Consensus 42 d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 3455666666654432 3455666777777777777665544444556777777777765432 133455667777777
Q ss_pred cCCCCCCchhH---HhhcCCCCCCEEeccCc
Q 016017 307 LSDTQVGSSGL---RHLSGLTNLESINLSFT 334 (396)
Q Consensus 307 l~~~~~~~~~~---~~l~~~~~L~~L~l~~~ 334 (396)
+-+|+++...- ..+-.+|+|+.||+..-
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 77776544321 11245667777776554
No 64
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.52 E-value=2e-05 Score=57.24 Aligned_cols=107 Identities=22% Similarity=0.242 Sum_probs=58.0
Q ss_pred CCCEEECCCCCCCh--HHHHhhhcCCCCcEEEccCCcCcHHHHHHhhCCCCCCEEeccCCCCChhHhHHHhCCCCccEEE
Q 016017 229 SLFYLNLNRCQLSD--DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 306 (396)
Q Consensus 229 ~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 306 (396)
.+..++++.|.+.. .....+.....|..+++++|.+....+..-..+|.++++++.+|.+.+. |..+..++.|+.++
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdv-PeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDV-PEELAAMPALRSLN 106 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhc-hHHHhhhHHhhhcc
Confidence 34455666665431 1233444555566666776666554333334555666677766666544 33366666777777
Q ss_pred cCCCCCCchhHHhhcCCCCCCEEeccCcccC
Q 016017 307 LSDTQVGSSGLRHLSGLTNLESINLSFTGIS 337 (396)
Q Consensus 307 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 337 (396)
++.|.+.... ..+..+.++-.|+..++...
T Consensus 107 l~~N~l~~~p-~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 107 LRFNPLNAEP-RVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred cccCccccch-HHHHHHHhHHHhcCCCCccc
Confidence 7766665332 22222555555665555443
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.51 E-value=6.8e-05 Score=56.11 Aligned_cols=121 Identities=21% Similarity=0.270 Sum_probs=46.1
Q ss_pred hhcCCCCcEEEccCCcCcHHHHHHhhCCCCCCEEeccCCCCChhHhHHHhCCCCccEEEcCCCCCCchhHHhhcCCCCCC
Q 016017 248 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 327 (396)
Q Consensus 248 l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 327 (396)
+..+++|+.+.+.. .+.......+.++++|+.+.+... +...+...+.++++++.+.+.+ .+.......+..+++|+
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~ 84 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK 84 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence 44455555555543 222222234555556666666553 3333334455555666666654 33333334455566666
Q ss_pred EEeccCcccChhhhHhhhCCCCCCEeecCCCCCcHHHHHHHhcCccC
Q 016017 328 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 374 (396)
Q Consensus 328 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L 374 (396)
.+.+..+ +.......+.++ +|+.+.+.. .+.......|.++++|
T Consensus 85 ~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 85 NIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp EEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred ccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 6666543 443344445555 666666654 2233334555555554
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.38 E-value=3e-05 Score=63.36 Aligned_cols=83 Identities=28% Similarity=0.216 Sum_probs=68.5
Q ss_pred CCCccEEEcCCCCCCchhHHhhcCCCCCCEEeccCcccChhhhHhhhCCCCCCEeecCCCCCcHHH-HHHHhcCccCCee
Q 016017 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG-LAALTSLTGLTHL 377 (396)
Q Consensus 299 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~-~~~l~~~~~L~~l 377 (396)
+.+.+.|+++||.+++. .....++.|+.|.|+-|.|+. ...+..|++|++|.|+.|.|.+.. ...+.++|+|+.|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIss--L~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISS--LAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeecccccc--chhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 34678899999999874 344589999999999999886 445678999999999999888654 3677899999999
Q ss_pred ecCCCccC
Q 016017 378 DLFGARIT 385 (396)
Q Consensus 378 ~l~~~~l~ 385 (396)
+|..|.=.
T Consensus 94 WL~ENPCc 101 (388)
T KOG2123|consen 94 WLDENPCC 101 (388)
T ss_pred hhccCCcc
Confidence 99998543
No 67
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=97.35 E-value=4.7e-05 Score=69.59 Aligned_cols=181 Identities=28% Similarity=0.413 Sum_probs=81.1
Q ss_pred ccEEEeecCCCChhHH----HhccCCCCCCEEEecCCCCChhhHHHHh----cC-CCCCEEECCCCCCChHH----HHhh
Q 016017 182 LKSLQISCSKVTDSGI----AYLKGLQKLTLLNLEGCPVTAACLDSLS----AL-GSLFYLNLNRCQLSDDG----CEKF 248 (396)
Q Consensus 182 L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~~~----~~-~~L~~L~l~~~~~~~~~----~~~l 248 (396)
+..+.+.+|.+.+... ..+...+.|+.|+++++.+.......+. .. ..+++|++..|.++... ...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 5566666666654332 2334456666777777665543333222 11 34455555555544333 2233
Q ss_pred hcCCCCcEEEccCCcCcHH----HHHHhh----CCCCCCEEeccCCCCChhHh----HHHhCCCC-ccEEEcCCCCCCch
Q 016017 249 SKIGSLKVLNLGFNEITDE----CLVHLK----GLTNLESLNLDSCGIGDEGL----VNLTGLCN-LKCLELSDTQVGSS 315 (396)
Q Consensus 249 ~~~~~L~~L~l~~~~~~~~----~~~~l~----~~~~L~~L~l~~~~~~~~~~----~~~~~~~~-L~~L~l~~~~~~~~ 315 (396)
.....++.++++.|.+... ....+. ...++++|.+.+|.++.... ..+...+. +..+++..|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 3355566666655544211 111122 23455555555554442211 11222222 33455555555444
Q ss_pred hHHhh----cCC-CCCCEEeccCcccChhhhHhh----hCCCCCCEeecCCCCCcH
Q 016017 316 GLRHL----SGL-TNLESINLSFTGISDGSLRKL----AGLSSLKSLNLDARQITD 362 (396)
Q Consensus 316 ~~~~l----~~~-~~L~~L~l~~~~~~~~~~~~l----~~~~~L~~L~l~~~~l~~ 362 (396)
+...+ ..+ +.++++++..|.+++.....+ ..++.++.+.+.+|.+.+
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 33322 222 344555555555544333322 234455555555555544
No 68
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.35 E-value=0.00023 Score=55.48 Aligned_cols=107 Identities=22% Similarity=0.244 Sum_probs=81.1
Q ss_pred CCCCEEeccCCCCChhHhHHHhCCCCccEEEcCCCCCCchhHHhhcCCCCCCEEeccCcccChhh-hHhhhCCCCCCEee
Q 016017 276 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS-LRKLAGLSSLKSLN 354 (396)
Q Consensus 276 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~ 354 (396)
.+...+++++|.+.. ...|..++.|..|.+.+|+|+...+..-..+|+|..|.+.+|.+.... ...+..||+|+.|.
T Consensus 42 d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 356678888887653 345677889999999999998776655566799999999999776532 33456799999999
Q ss_pred cCCCCCcHHHH---HHHhcCccCCeeecCCCcc
Q 016017 355 LDARQITDTGL---AALTSLTGLTHLDLFGARI 384 (396)
Q Consensus 355 l~~~~l~~~~~---~~l~~~~~L~~l~l~~~~l 384 (396)
+-+|++....- -.+..+|+|+.||..+-..
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence 99998875322 3456789999999887643
No 69
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.27 E-value=0.00021 Score=53.46 Aligned_cols=59 Identities=19% Similarity=0.227 Sum_probs=20.5
Q ss_pred ccCCCCCCEEEecCCCCChhhHHHHhcCCCCCEEECCCCCCChHHHHhhhcCCCCcEEEcc
Q 016017 200 LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG 260 (396)
Q Consensus 200 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 260 (396)
|..+++|+.+.+.. .+.......+..+++|+.+.+... +.......+..+++++.+.+.
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFP 66 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEET
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccccccccccc
Confidence 44455555555543 222222233444445555555442 222222334444445555443
No 70
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.06 E-value=0.00024 Score=57.78 Aligned_cols=86 Identities=22% Similarity=0.140 Sum_probs=41.1
Q ss_pred hccCCCCCCEEEecCC--CCChhhHHHHhcCCCCCEEECCCCCCCh-HHHHhhhcCCCCcEEEccCCcCcH---HHHHHh
Q 016017 199 YLKGLQKLTLLNLEGC--PVTAACLDSLSALGSLFYLNLNRCQLSD-DGCEKFSKIGSLKVLNLGFNEITD---ECLVHL 272 (396)
Q Consensus 199 ~~~~~~~L~~L~l~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~---~~~~~l 272 (396)
.+..+++|++|.++.| ++..........+|+|+++++++|.+.. .....+..+.+|.+|++.+|.... .--..+
T Consensus 60 ~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf 139 (260)
T KOG2739|consen 60 NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVF 139 (260)
T ss_pred cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHH
Confidence 3444555566666555 3333322223344666666666665542 112233445556666666554322 112234
Q ss_pred hCCCCCCEEecc
Q 016017 273 KGLTNLESLNLD 284 (396)
Q Consensus 273 ~~~~~L~~L~l~ 284 (396)
.-+++|+.|+-.
T Consensus 140 ~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 140 LLLPSLKYLDGC 151 (260)
T ss_pred HHhhhhcccccc
Confidence 445666665443
No 71
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.02 E-value=0.00025 Score=57.68 Aligned_cols=106 Identities=34% Similarity=0.341 Sum_probs=67.9
Q ss_pred CCCCCEEeccCCCCChhHhHHHhCCCCccEEEcCCCC--CCchhHHhhcCCCCCCEEeccCcccCh-hhhHhhhCCCCCC
Q 016017 275 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ--VGSSGLRHLSGLTNLESINLSFTGISD-GSLRKLAGLSSLK 351 (396)
Q Consensus 275 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~ 351 (396)
+..|+.+++.++.++. ...+..+|+|+.|.++.|. +..........+|+|+++++++|++.. .....+..+++|.
T Consensus 42 ~~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 42 FVELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK 119 (260)
T ss_pred ccchhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence 3456666666665543 2345677899999999984 333222333567999999999997764 1223345678888
Q ss_pred EeecCCCCCcH---HHHHHHhcCccCCeeecCCC
Q 016017 352 SLNLDARQITD---TGLAALTSLTGLTHLDLFGA 382 (396)
Q Consensus 352 ~L~l~~~~l~~---~~~~~l~~~~~L~~l~l~~~ 382 (396)
.|++.+|..+. --...+.-+++|+.++-...
T Consensus 120 ~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 120 SLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred hhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence 99998876543 22345556777877765443
No 72
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.01 E-value=0.0031 Score=55.95 Aligned_cols=138 Identities=19% Similarity=0.141 Sum_probs=78.0
Q ss_pred cccCCCCccEEEeecCCCChhHHHhccCCCCCCEEEecCCCCChhhHHHHhcCCCCCEEECCCCCCChHHHHhhhcCCCC
Q 016017 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL 254 (396)
Q Consensus 175 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 254 (396)
.+..+.+++.|++++|.++..+ .-.++|+.|.+++|......+..+ .++|++|++++|...... .++|
T Consensus 47 r~~~~~~l~~L~Is~c~L~sLP----~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sL------P~sL 114 (426)
T PRK15386 47 QIEEARASGRLYIKDCDIESLP----VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGL------PESV 114 (426)
T ss_pred HHHHhcCCCEEEeCCCCCcccC----CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccc------cccc
Confidence 3445788999999988766542 223578999998864333333333 357888888877321111 2357
Q ss_pred cEEEccCCcCcHHHHHHhhCC-CCCCEEeccCCCCCh-h-HhHHHhCCCCccEEEcCCCCCCchhHHhhcCCCCCCEEec
Q 016017 255 KVLNLGFNEITDECLVHLKGL-TNLESLNLDSCGIGD-E-GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 331 (396)
Q Consensus 255 ~~L~l~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~-~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 331 (396)
+.|.+..+.... +..+ ++|+.|.+.++.... . .+..+ .++|++|.+.+|.... .+..+ ..+|+.|++
T Consensus 115 e~L~L~~n~~~~-----L~~LPssLk~L~I~~~n~~~~~~lp~~L--PsSLk~L~Is~c~~i~-LP~~L--P~SLk~L~l 184 (426)
T PRK15386 115 RSLEIKGSATDS-----IKNVPNGLTSLSINSYNPENQARIDNLI--SPSLKTLSLTGCSNII-LPEKL--PESLQSITL 184 (426)
T ss_pred ceEEeCCCCCcc-----cccCcchHhheecccccccccccccccc--CCcccEEEecCCCccc-Ccccc--cccCcEEEe
Confidence 777776544322 2233 367777775432110 0 01111 1478888888876432 11222 257888888
Q ss_pred cCc
Q 016017 332 SFT 334 (396)
Q Consensus 332 ~~~ 334 (396)
+.+
T Consensus 185 s~n 187 (426)
T PRK15386 185 HIE 187 (426)
T ss_pred ccc
Confidence 765
No 73
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.87 E-value=0.00019 Score=65.62 Aligned_cols=238 Identities=26% Similarity=0.290 Sum_probs=144.5
Q ss_pred ccEEecCCCCCccc---cccccccCCCCccEEEeecCCCChhHHHhc----cCC-CCCCEEEecCCCCChh----hHHHH
Q 016017 157 LESLNIKWCNCITD---SDMKPLSGLTNLKSLQISCSKVTDSGIAYL----KGL-QKLTLLNLEGCPVTAA----CLDSL 224 (396)
Q Consensus 157 L~~L~l~~~~~~~~---~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~----~~~-~~L~~L~l~~~~~~~~----~~~~~ 224 (396)
+..+.+.+|..-.. .....+...++|+.|++++|.+.+.....+ ... +.++.|++..|.+... ....+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 66666666433221 122345567888899999998886654444 222 5567777777765543 23344
Q ss_pred hcCCCCCEEECCCCCCChHH----HHhhh----cCCCCcEEEccCCcCcHHHH----HHhhCCCC-CCEEeccCCCCChh
Q 016017 225 SALGSLFYLNLNRCQLSDDG----CEKFS----KIGSLKVLNLGFNEITDECL----VHLKGLTN-LESLNLDSCGIGDE 291 (396)
Q Consensus 225 ~~~~~L~~L~l~~~~~~~~~----~~~l~----~~~~L~~L~l~~~~~~~~~~----~~l~~~~~-L~~L~l~~~~~~~~ 291 (396)
.....++.+++..|.+.... ...+. ...++++|.+.++.++.... ..+...+. +..+++..|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 45678888888887764332 22233 35678888888887654322 23344444 66688888888765
Q ss_pred HhHHH----hCC-CCccEEEcCCCCCCchhHHhh----cCCCCCCEEeccCcccChhhhHhhh----CCCCCCEeecCCC
Q 016017 292 GLVNL----TGL-CNLKCLELSDTQVGSSGLRHL----SGLTNLESINLSFTGISDGSLRKLA----GLSSLKSLNLDAR 358 (396)
Q Consensus 292 ~~~~~----~~~-~~L~~L~l~~~~~~~~~~~~l----~~~~~L~~L~l~~~~~~~~~~~~l~----~~~~L~~L~l~~~ 358 (396)
+...+ ..+ +.++++++..|.+++.+...+ ..++.++++.++.|.+.+....... ....+..+.+.++
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~~ 328 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGGT 328 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhcccc
Confidence 44333 334 577889999998877665544 5678899999999888775554332 3345555566543
Q ss_pred C-CcHHH----HHHHhcCccCCeeecCCCccChHHHHHHHh
Q 016017 359 Q-ITDTG----LAALTSLTGLTHLDLFGARITDSGAAYLRS 394 (396)
Q Consensus 359 ~-l~~~~----~~~l~~~~~L~~l~l~~~~l~~~~~~~l~~ 394 (396)
. ..... ......-..+....+++++..+.+...+..
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (478)
T KOG4308|consen 329 GKGTRGGTSVLAEADAQRQLLSELGISGNRVGEEGLALLVL 369 (478)
T ss_pred CccchhHHHHHHHHHHHhhhhHHHHhhhccchHHHHHHHhh
Confidence 3 22221 122223344556667777777777665544
No 74
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=96.50 E-value=0.002 Score=31.75 Aligned_cols=22 Identities=45% Similarity=0.581 Sum_probs=14.1
Q ss_pred ccCCeeecCCCccChHHHHHHH
Q 016017 372 TGLTHLDLFGARITDSGAAYLR 393 (396)
Q Consensus 372 ~~L~~l~l~~~~l~~~~~~~l~ 393 (396)
++|+.|+|++|+|++.++..+.
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l~ 23 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASALA 23 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHhC
Confidence 5677777777777777776664
No 75
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.33 E-value=0.0076 Score=53.56 Aligned_cols=140 Identities=14% Similarity=0.135 Sum_probs=84.7
Q ss_pred HHhccCCCCCCEEEecCCCCChhhHHHHhcCCCCCEEECCCCCCChHHHHhhhcCCCCcEEEccCCc-CcHHHHHHhhCC
Q 016017 197 IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE-ITDECLVHLKGL 275 (396)
Q Consensus 197 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~l~~~ 275 (396)
...+..+.+++.|++++|.+... | .-.++|+.|.+.+|.--...+..+ .++|+.|.+++|. +.. -.
T Consensus 45 ~~r~~~~~~l~~L~Is~c~L~sL-P---~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~s-------LP 111 (426)
T PRK15386 45 TPQIEEARASGRLYIKDCDIESL-P---VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISG-------LP 111 (426)
T ss_pred HHHHHHhcCCCEEEeCCCCCccc-C---CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccc-------cc
Confidence 34455678999999999976553 3 123579999998865322223222 3579999999873 321 12
Q ss_pred CCCCEEeccCCCCChhHhHHHhCC-CCccEEEcCCCCCC-ch-hHHhhcCCCCCCEEeccCcccChhhhHhhhCCCCCCE
Q 016017 276 TNLESLNLDSCGIGDEGLVNLTGL-CNLKCLELSDTQVG-SS-GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352 (396)
Q Consensus 276 ~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~-~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 352 (396)
++|+.|.+.++.... +..+ ++|+.|.+.+++.. .. .... -.++|++|++++|.... .+..+. .+|+.
T Consensus 112 ~sLe~L~L~~n~~~~-----L~~LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i~-LP~~LP--~SLk~ 181 (426)
T PRK15386 112 ESVRSLEIKGSATDS-----IKNVPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNII-LPEKLP--ESLQS 181 (426)
T ss_pred cccceEEeCCCCCcc-----cccCcchHhheeccccccccccccccc--cCCcccEEEecCCCccc-Cccccc--ccCcE
Confidence 478888887654332 2223 37888888654311 00 0111 12689999999986442 222222 58999
Q ss_pred eecCCCC
Q 016017 353 LNLDARQ 359 (396)
Q Consensus 353 L~l~~~~ 359 (396)
|.++.+.
T Consensus 182 L~ls~n~ 188 (426)
T PRK15386 182 ITLHIEQ 188 (426)
T ss_pred EEecccc
Confidence 9987753
No 76
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=96.29 E-value=0.0052 Score=30.96 Aligned_cols=24 Identities=42% Similarity=0.534 Sum_probs=19.7
Q ss_pred CccCCeeecCCC-ccChHHHHHHHh
Q 016017 371 LTGLTHLDLFGA-RITDSGAAYLRS 394 (396)
Q Consensus 371 ~~~L~~l~l~~~-~l~~~~~~~l~~ 394 (396)
+++|++|+|++| .+++.++..+.+
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~~ 25 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALAK 25 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHhc
Confidence 578889999998 799988888764
No 77
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=95.98 E-value=0.0086 Score=30.76 Aligned_cols=24 Identities=33% Similarity=0.465 Sum_probs=18.5
Q ss_pred ccCCeeecCCCccChHHHHHHHhc
Q 016017 372 TGLTHLDLFGARITDSGAAYLRSK 395 (396)
Q Consensus 372 ~~L~~l~l~~~~l~~~~~~~l~~~ 395 (396)
++|++|+|++|.+++.|...+.+.
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~~ 25 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAEA 25 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHHH
Confidence 467888888888888888777665
No 78
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=95.11 E-value=0.021 Score=27.99 Aligned_cols=21 Identities=48% Similarity=0.721 Sum_probs=10.5
Q ss_pred CCCCEeecCCCCCcHHHHHHH
Q 016017 348 SSLKSLNLDARQITDTGLAAL 368 (396)
Q Consensus 348 ~~L~~L~l~~~~l~~~~~~~l 368 (396)
++|+.|+|++|++++.++..+
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHh
Confidence 455566666666555555444
No 79
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=94.12 E-value=0.063 Score=26.93 Aligned_cols=21 Identities=43% Similarity=0.774 Sum_probs=9.7
Q ss_pred CCCCeeeccCCcccChhHHHh
Q 016017 81 SNLQSLDFNFCIQISDGGLEH 101 (396)
Q Consensus 81 ~~L~~L~l~~~~~~~~~~~~~ 101 (396)
|+|++|+++.|..+++.....
T Consensus 2 ~~L~~L~l~~C~~itD~gl~~ 22 (26)
T smart00367 2 PNLRELDLSGCTNITDEGLQA 22 (26)
T ss_pred CCCCEeCCCCCCCcCHHHHHH
Confidence 444555555544444444333
No 80
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.38 E-value=0.034 Score=24.66 Aligned_cols=14 Identities=43% Similarity=0.582 Sum_probs=6.3
Q ss_pred cCCeeecCCCccCh
Q 016017 373 GLTHLDLFGARITD 386 (396)
Q Consensus 373 ~L~~l~l~~~~l~~ 386 (396)
+|+.|++++|+++.
T Consensus 2 ~L~~L~l~~n~L~~ 15 (17)
T PF13504_consen 2 NLRTLDLSNNRLTS 15 (17)
T ss_dssp T-SEEEETSS--SS
T ss_pred ccCEEECCCCCCCC
Confidence 45666666665543
No 81
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=91.39 E-value=0.083 Score=25.22 Aligned_cols=12 Identities=33% Similarity=0.470 Sum_probs=6.3
Q ss_pred CCEEeccCcccC
Q 016017 326 LESINLSFTGIS 337 (396)
Q Consensus 326 L~~L~l~~~~~~ 337 (396)
|++|++++|.++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 455555555554
No 82
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=90.08 E-value=0.52 Score=24.07 Aligned_cols=21 Identities=38% Similarity=0.623 Sum_probs=13.5
Q ss_pred CCCCEeecCCCCCcHHHHHHH
Q 016017 348 SSLKSLNLDARQITDTGLAAL 368 (396)
Q Consensus 348 ~~L~~L~l~~~~l~~~~~~~l 368 (396)
++|+.|+|++|.+.+.+...+
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L 22 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARAL 22 (28)
T ss_pred CccCEEECCCCCCCHHHHHHH
Confidence 456777777777766655544
No 83
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=87.70 E-value=0.35 Score=24.08 Aligned_cols=20 Identities=20% Similarity=0.267 Sum_probs=10.7
Q ss_pred ccCCeeecCCCccChHHHHH
Q 016017 372 TGLTHLDLFGARITDSGAAY 391 (396)
Q Consensus 372 ~~L~~l~l~~~~l~~~~~~~ 391 (396)
++|+.|++.+|+++..+...
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCCcCCHHH
Confidence 44555556555555554443
No 84
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=87.70 E-value=0.35 Score=24.08 Aligned_cols=20 Identities=20% Similarity=0.267 Sum_probs=10.7
Q ss_pred ccCCeeecCCCccChHHHHH
Q 016017 372 TGLTHLDLFGARITDSGAAY 391 (396)
Q Consensus 372 ~~L~~l~l~~~~l~~~~~~~ 391 (396)
++|+.|++.+|+++..+...
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCCcCCHHH
Confidence 44555556555555554443
No 85
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=75.03 E-value=2.5 Score=21.12 Aligned_cols=16 Identities=38% Similarity=0.445 Sum_probs=11.6
Q ss_pred ccCCeeecCCCccChH
Q 016017 372 TGLTHLDLFGARITDS 387 (396)
Q Consensus 372 ~~L~~l~l~~~~l~~~ 387 (396)
.+|+.|++++|+|+..
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 5678888888877543
No 86
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=70.94 E-value=6 Score=36.74 Aligned_cols=63 Identities=24% Similarity=0.211 Sum_probs=34.8
Q ss_pred hCCCCCCEEeccCCCCChh-HhHHH-hCCCCccEEEcCCC--CCCchhHHhh--cCCCCCCEEeccCcccC
Q 016017 273 KGLTNLESLNLDSCGIGDE-GLVNL-TGLCNLKCLELSDT--QVGSSGLRHL--SGLTNLESINLSFTGIS 337 (396)
Q Consensus 273 ~~~~~L~~L~l~~~~~~~~-~~~~~-~~~~~L~~L~l~~~--~~~~~~~~~l--~~~~~L~~L~l~~~~~~ 337 (396)
.+.|.+..+++++|++... ....+ ...|.|+.|+|++| .+.. ...+ -+...|++|.+.+|.+.
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~--~~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISS--ESELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcc--hhhhhhhcCCCHHHeeecCCccc
Confidence 4567777777777765431 11112 24577777777777 2222 1122 12345677777777554
No 87
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=64.46 E-value=8.6 Score=35.78 Aligned_cols=89 Identities=21% Similarity=0.180 Sum_probs=56.4
Q ss_pred HHHHhcCCCccEEEeecCCCChHH-HHHh-hCCCCCCeeeccCCcccChhHHHhhh--CCCCCcEEeccCCccccHHH--
Q 016017 50 DVIASQGSSLLSVDLSGSDVTDSG-LIHL-KDCSNLQSLDFNFCIQISDGGLEHLR--GLSNLTSLSFRRNNAITAQG-- 123 (396)
Q Consensus 50 ~~~~~~~~~l~~L~l~~~~~~~~~-~~~l-~~~~~L~~L~l~~~~~~~~~~~~~l~--~~~~L~~L~l~~~~~~~~~~-- 123 (396)
.....+.+.+..++|++|++.... ...+ ...|+|+.|+|+++...... ..++. +...|++|-+.||...+...
T Consensus 211 ~~~~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~-~~el~K~k~l~Leel~l~GNPlc~tf~~~ 289 (585)
T KOG3763|consen 211 KHIEENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISS-ESELDKLKGLPLEELVLEGNPLCTTFSDR 289 (585)
T ss_pred HHhhcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcc-hhhhhhhcCCCHHHeeecCCccccchhhh
Confidence 555667899999999999875432 2334 36799999999986222221 22232 33569999999987643221
Q ss_pred ---HHHH-hCCCCCcEeccc
Q 016017 124 ---MKAF-AGLINLVKLDLE 139 (396)
Q Consensus 124 ---~~~~-~~~~~L~~L~l~ 139 (396)
..++ ..+|+|..|+=.
T Consensus 290 s~yv~~i~~~FPKL~~LDG~ 309 (585)
T KOG3763|consen 290 SEYVSAIRELFPKLLRLDGV 309 (585)
T ss_pred HHHHHHHHHhcchheeecCc
Confidence 1222 258888877543
No 88
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=55.54 E-value=16 Score=31.71 Aligned_cols=66 Identities=27% Similarity=0.323 Sum_probs=32.3
Q ss_pred CCccEEEcCCC-CCCchhHH----hhcCCCCCCEEeccCcccChhhhHhhh----CCCCCCEeecCCCCCcHHHH
Q 016017 300 CNLKCLELSDT-QVGSSGLR----HLSGLTNLESINLSFTGISDGSLRKLA----GLSSLKSLNLDARQITDTGL 365 (396)
Q Consensus 300 ~~L~~L~l~~~-~~~~~~~~----~l~~~~~L~~L~l~~~~~~~~~~~~l~----~~~~L~~L~l~~~~l~~~~~ 365 (396)
+.++.+++.+. +++..... .+...+..+...+.+....+.....+. .++.|+.|++.+|-|++.+.
T Consensus 198 ~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~tr~~d~vA~a~a~ml~~n~sl~slnvesnFItg~gi 272 (353)
T KOG3735|consen 198 TGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANTRSSDPVAFAIAEMLKENKSLTSLNVESNFITGLGI 272 (353)
T ss_pred CCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhcccCCchhHHHHHHHHhhcchhhheeccccccccHHH
Confidence 56666666554 23322222 223345555555555554443333332 34566666666666665443
No 89
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=51.36 E-value=9.2 Score=19.14 Aligned_cols=17 Identities=18% Similarity=0.274 Sum_probs=11.7
Q ss_pred ccCCeeecCCCccChHH
Q 016017 372 TGLTHLDLFGARITDSG 388 (396)
Q Consensus 372 ~~L~~l~l~~~~l~~~~ 388 (396)
++|+.|++++|+++..+
T Consensus 2 ~~L~~L~vs~N~Lt~LP 18 (26)
T smart00364 2 PSLKELNVSNNQLTSLP 18 (26)
T ss_pred cccceeecCCCccccCc
Confidence 45777777777776544
No 90
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=49.48 E-value=77 Score=29.33 Aligned_cols=285 Identities=20% Similarity=0.107 Sum_probs=120.2
Q ss_pred CCCcEEeccCCccccHHHHHH-----HhCCCCCcEecccccccccCcccccCCCCcccEEecCCCCCcccccccccc--C
Q 016017 106 SNLTSLSFRRNNAITAQGMKA-----FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS--G 178 (396)
Q Consensus 106 ~~L~~L~l~~~~~~~~~~~~~-----~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~--~ 178 (396)
..++.+.+..|.......-.. ...-+.+++++++.+...+..+..+..-.. -+.++.|.........-.. .
T Consensus 135 ~~l~~l~l~~cml~pdf~~kl~hs~~~rpnpr~r~~dls~npi~dkvpihl~~p~~--pl~lr~c~lsskfis~l~~qsg 212 (553)
T KOG4242|consen 135 APLPPLGLLPCMLLPDFGQKLRHSTRARPNPRARQHDLSPNPIGDKVPIHLPQPGN--PLSLRVCELSSKFISKLLIQSG 212 (553)
T ss_pred ccCCccCchhccCchhhcccccchhhcCCcchhhhhccCCCcccccCCccccCCCC--ccchhhhhhhhhHHHHhhhhhc
Confidence 346666666665422221110 112456777788777655555444322111 0344443322221111110 1
Q ss_pred CCCccEEEeecCCCChhHHHhc---cCCCCCCEEEecCCCCCh--hh-HHHHhcCCCCCEEECCCCCCCh----HH----
Q 016017 179 LTNLKSLQISCSKVTDSGIAYL---KGLQKLTLLNLEGCPVTA--AC-LDSLSALGSLFYLNLNRCQLSD----DG---- 244 (396)
Q Consensus 179 ~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~--~~-~~~~~~~~~L~~L~l~~~~~~~----~~---- 244 (396)
-..+++++++.+...+..+..+ ..-.-++.++.++..+.. .. +......+.+...+++.+.... +.
T Consensus 213 ~~~lteldls~n~~Kddip~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s~skg~Egg~~~ 292 (553)
T KOG4242|consen 213 RLWLTELDLSTNGGKDDIPRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTSPSKGEEGGGAE 292 (553)
T ss_pred cccccccccccCCCCccchhHHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCCCccccccccccc
Confidence 1356778888776655443333 222345556665543221 11 1112233566666666554321 11
Q ss_pred HHhhhcCCCCcEEEccCCcCcHHHHH-HhhCC----C-CCCEEeccCCCCChh-HhHHHhCCCCccEEEcCCCCCCchhH
Q 016017 245 CEKFSKIGSLKVLNLGFNEITDECLV-HLKGL----T-NLESLNLDSCGIGDE-GLVNLTGLCNLKCLELSDTQVGSSGL 317 (396)
Q Consensus 245 ~~~l~~~~~L~~L~l~~~~~~~~~~~-~l~~~----~-~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~ 317 (396)
-+.++.-+++ +|++..+......+. .+-.. + .=-.+++..|...+. ..++=..-..++++.+..|+....+-
T Consensus 293 k~~fS~~~sg-hln~~~~~~psE~lks~LLgla~ne~t~g~rldl~~cp~~~a~vleaci~g~R~q~l~~rdnnldgeg~ 371 (553)
T KOG4242|consen 293 KDTFSPDPSG-HLNSRPRYTPSEKLKSMLLGLAENEATLGARLDLRRCPLERAEVLEACIFGQRVQVLLQRDNNLDGEGG 371 (553)
T ss_pred ccccCcCccc-ccccccccCchhhhhhhhcccccccccccccCChhhccccccchhhccccceeeeEeeccccccccccc
Confidence 1233334455 666655544322111 11110 0 011233444433221 11110111256777777776544332
Q ss_pred Hh--hcCCCCCCEEeccCccc---Ch--hh---hHhh-hCCCCCCEeecCCCCCcHHHHH---HHhcCccCCeeecCCCc
Q 016017 318 RH--LSGLTNLESINLSFTGI---SD--GS---LRKL-AGLSSLKSLNLDARQITDTGLA---ALTSLTGLTHLDLFGAR 383 (396)
Q Consensus 318 ~~--l~~~~~L~~L~l~~~~~---~~--~~---~~~l-~~~~~L~~L~l~~~~l~~~~~~---~l~~~~~L~~l~l~~~~ 383 (396)
.. +..-++.+.+++..-.- -+ .. .... ....-+..+.++.|.+...... .+..-+.+.+++++||.
T Consensus 372 ~vgk~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~ 451 (553)
T KOG4242|consen 372 AVGKRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNG 451 (553)
T ss_pred cccceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccccHHHHHHhhccCcccccccccCCC
Confidence 22 23345566665544311 00 00 0000 0123455666666655533222 22334566777777776
Q ss_pred cChHHHHHHH
Q 016017 384 ITDSGAAYLR 393 (396)
Q Consensus 384 l~~~~~~~l~ 393 (396)
.++.+...+.
T Consensus 452 mgd~gap~lp 461 (553)
T KOG4242|consen 452 MGDGGAPPLP 461 (553)
T ss_pred cccCCCCcCc
Confidence 6665544443
No 91
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=23.72 E-value=1.6 Score=35.61 Aligned_cols=87 Identities=15% Similarity=0.074 Sum_probs=39.2
Q ss_pred CCCCCCEEeccCCCCChhHhHHHhCCCCccEEEcCCCCCCchhHHhhcCCCCCCEEeccCcccChhhhHhhhCCCCCCEe
Q 016017 274 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353 (396)
Q Consensus 274 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 353 (396)
.....+.|+++.++....+ ..++.+..+..|+++.+.+.- .+..+.....+..++...|..+. .|..+...|+++.+
T Consensus 40 ~~kr~tvld~~s~r~vn~~-~n~s~~t~~~rl~~sknq~~~-~~~d~~q~~e~~~~~~~~n~~~~-~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLVNLG-KNFSILTRLVRLDLSKNQIKF-LPKDAKQQRETVNAASHKNNHSQ-QPKSQKKEPHPKKN 116 (326)
T ss_pred ccceeeeehhhhhHHHhhc-cchHHHHHHHHHhccHhhHhh-ChhhHHHHHHHHHHHhhccchhh-CCccccccCCcchh
Confidence 3445555666555443221 112233355555555544321 11112222333444444443332 34455566667777
Q ss_pred ecCCCCCcHH
Q 016017 354 NLDARQITDT 363 (396)
Q Consensus 354 ~l~~~~l~~~ 363 (396)
++.++.+...
T Consensus 117 e~k~~~~~~~ 126 (326)
T KOG0473|consen 117 EQKKTEFFRK 126 (326)
T ss_pred hhccCcchHH
Confidence 7666665543
No 92
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=22.16 E-value=47 Score=19.08 Aligned_cols=14 Identities=43% Similarity=0.662 Sum_probs=10.5
Q ss_pred CCcHHHHHHHHHHh
Q 016017 1 MLPRDISQQIFNEL 14 (396)
Q Consensus 1 ~~p~~~~~~~~~~l 14 (396)
.+|+|+...+|..|
T Consensus 3 ~LP~Eil~~If~~L 16 (47)
T PF12937_consen 3 SLPDEILLEIFSYL 16 (47)
T ss_dssp CS-HHHHHHHHTTS
T ss_pred HhHHHHHHHHHhcC
Confidence 47999999999643
Done!