Query 016017
Match_columns 396
No_of_seqs 238 out of 3704
Neff 11.3
Searched_HMMs 29240
Date Mon Mar 25 06:28:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016017.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016017hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1z7x_W Ribonuclease inhibitor; 100.0 4.1E-33 1.4E-37 256.8 29.3 360 32-394 4-420 (461)
2 3v47_A TOLL-like receptor 5B a 100.0 1.4E-35 4.7E-40 272.7 11.5 330 57-388 30-411 (455)
3 3rgz_A Protein brassinosteroid 100.0 8.3E-36 2.8E-40 290.2 8.7 349 32-386 270-718 (768)
4 3rgz_A Protein brassinosteroid 100.0 4.3E-36 1.5E-40 292.2 5.5 348 32-387 248-695 (768)
5 4fmz_A Internalin; leucine ric 100.0 4.1E-32 1.4E-36 240.6 25.5 306 55-386 42-347 (347)
6 1z7x_W Ribonuclease inhibitor; 100.0 1.9E-31 6.4E-36 245.6 27.6 336 56-394 2-392 (461)
7 3t6q_A CD180 antigen; protein- 100.0 1.6E-33 5.6E-38 268.1 13.8 233 151-386 274-537 (606)
8 3t6q_A CD180 antigen; protein- 100.0 1.7E-33 5.9E-38 268.0 13.8 282 102-386 274-561 (606)
9 2id5_A Lingo-1, leucine rich r 100.0 9.2E-33 3.2E-37 255.2 14.2 303 56-361 31-333 (477)
10 3vq2_A TLR4, TOLL-like recepto 100.0 4.2E-33 1.4E-37 265.3 11.4 132 31-166 32-164 (606)
11 3ogk_B Coronatine-insensitive 100.0 3E-31 1E-35 251.9 23.0 364 32-395 74-536 (592)
12 2id5_A Lingo-1, leucine rich r 100.0 2.3E-32 7.8E-37 252.6 14.6 322 59-386 13-334 (477)
13 2p1m_B Transport inhibitor res 100.0 1.5E-30 5.2E-35 247.3 27.4 361 32-395 67-529 (594)
14 1o6v_A Internalin A; bacterial 100.0 3.3E-30 1.1E-34 237.1 27.4 322 32-386 47-389 (466)
15 4eco_A Uncharacterized protein 100.0 5.5E-33 1.9E-37 264.4 8.8 322 54-386 203-601 (636)
16 2z63_A TOLL-like receptor 4, v 100.0 1.2E-32 4.2E-37 260.4 10.8 349 32-387 29-533 (570)
17 3v47_A TOLL-like receptor 5B a 100.0 1.4E-32 4.8E-37 252.7 10.3 324 60-389 13-388 (455)
18 4fmz_A Internalin; leucine ric 100.0 1.8E-29 6.2E-34 223.5 29.9 302 32-361 45-346 (347)
19 3o6n_A APL1; leucine-rich repe 100.0 2.4E-31 8.3E-36 239.2 17.3 319 55-394 43-361 (390)
20 3vq2_A TLR4, TOLL-like recepto 100.0 1.2E-32 4.1E-37 262.2 7.7 344 32-385 57-558 (606)
21 2z7x_B TOLL-like receptor 1, v 100.0 2E-31 6.7E-36 249.1 15.4 345 31-387 21-483 (520)
22 2z81_A CD282 antigen, TOLL-lik 100.0 5.1E-31 1.7E-35 248.1 17.8 181 57-239 26-207 (549)
23 2z81_A CD282 antigen, TOLL-lik 100.0 3.3E-31 1.1E-35 249.4 16.4 351 31-388 26-513 (549)
24 1ziw_A TOLL-like receptor 3; i 100.0 1.4E-31 4.7E-36 258.2 14.0 328 58-386 249-623 (680)
25 3j0a_A TOLL-like receptor 5; m 100.0 6.9E-32 2.4E-36 265.2 7.4 306 55-361 22-375 (844)
26 4eco_A Uncharacterized protein 100.0 1.2E-31 4E-36 255.3 8.5 342 32-383 207-630 (636)
27 4ecn_A Leucine-rich repeat pro 100.0 4.7E-31 1.6E-35 255.5 12.4 321 55-387 446-842 (876)
28 1ziw_A TOLL-like receptor 3; i 100.0 1.1E-30 3.8E-35 251.9 14.8 330 56-388 48-397 (680)
29 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 6.1E-31 2.1E-35 247.8 11.4 160 225-387 350-512 (562)
30 3oja_B Anopheles plasmodium-re 100.0 2.3E-30 7.8E-35 245.1 15.2 318 55-393 49-366 (597)
31 1o6v_A Internalin A; bacterial 100.0 5.9E-29 2E-33 228.7 23.9 306 56-388 45-369 (466)
32 3j0a_A TOLL-like receptor 5; m 100.0 3.3E-32 1.1E-36 267.5 1.6 353 32-387 49-519 (844)
33 2z7x_B TOLL-like receptor 1, v 100.0 9E-30 3.1E-34 237.9 15.3 321 57-389 21-461 (520)
34 4ecn_A Leucine-rich repeat pro 100.0 1.5E-30 5.1E-35 252.0 9.8 302 55-368 489-847 (876)
35 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.4E-29 8.1E-34 236.9 10.8 322 56-389 51-490 (562)
36 3o6n_A APL1; leucine-rich repe 100.0 1.7E-28 5.9E-33 220.6 15.4 292 79-388 43-334 (390)
37 2z63_A TOLL-like receptor 4, v 100.0 2.2E-29 7.4E-34 238.2 6.8 325 32-362 53-532 (570)
38 2p1m_B Transport inhibitor res 100.0 7.4E-27 2.5E-31 221.9 23.0 346 32-382 106-541 (594)
39 4g8a_A TOLL-like receptor 4; l 99.9 6.4E-28 2.2E-32 231.1 13.9 136 252-387 445-582 (635)
40 3ogk_B Coronatine-insensitive 99.9 7.1E-27 2.4E-31 221.9 20.8 230 151-382 289-548 (592)
41 3oja_B Anopheles plasmodium-re 99.9 1E-27 3.6E-32 226.9 13.9 292 79-388 49-340 (597)
42 3bz5_A Internalin-J, INLJ; leu 99.9 2.8E-27 9.7E-32 215.8 15.5 293 32-362 43-353 (457)
43 1ogq_A PGIP-2, polygalacturona 99.9 1.4E-28 4.8E-33 213.9 3.6 249 132-383 51-302 (313)
44 3bz5_A Internalin-J, INLJ; leu 99.9 1.7E-26 5.8E-31 210.7 17.0 298 55-386 40-353 (457)
45 1xku_A Decorin; proteoglycan, 99.9 5E-27 1.7E-31 206.2 12.7 289 58-383 32-330 (330)
46 1xku_A Decorin; proteoglycan, 99.9 1E-26 3.4E-31 204.3 12.8 271 56-359 51-330 (330)
47 2ft3_A Biglycan; proteoglycan, 99.9 3.3E-27 1.1E-31 207.4 7.7 288 58-383 34-331 (332)
48 2ft3_A Biglycan; proteoglycan, 99.9 7.5E-27 2.6E-31 205.2 8.9 288 31-359 33-331 (332)
49 1ogq_A PGIP-2, polygalacturona 99.9 2.7E-27 9.2E-32 205.8 3.2 249 81-359 50-302 (313)
50 2z80_A TOLL-like receptor 2, v 99.9 1.2E-25 4.2E-30 199.2 9.7 254 106-361 52-314 (353)
51 2ast_B S-phase kinase-associat 99.9 1.3E-24 4.4E-29 191.5 16.1 293 1-345 11-314 (336)
52 2z80_A TOLL-like receptor 2, v 99.9 1.3E-24 4.4E-29 192.6 14.2 259 57-338 52-315 (353)
53 2ca6_A RAN GTPase-activating p 99.9 3.1E-23 1.1E-27 186.0 20.9 244 125-388 26-319 (386)
54 3zyj_A Leucine-rich repeat-con 99.9 1.8E-24 6E-29 197.5 11.9 228 131-361 64-292 (440)
55 3zyi_A Leucine-rich repeat-con 99.9 2.2E-24 7.4E-29 197.5 11.9 228 131-361 75-303 (452)
56 1ozn_A Reticulon 4 receptor; N 99.9 2.6E-24 8.8E-29 184.9 11.3 206 155-361 32-238 (285)
57 4g8a_A TOLL-like receptor 4; l 99.9 1.9E-24 6.6E-29 207.0 10.8 332 56-389 51-559 (635)
58 2z66_A Variable lymphocyte rec 99.9 4.1E-25 1.4E-29 191.9 5.5 230 130-361 27-261 (306)
59 2ca6_A RAN GTPase-activating p 99.9 5.7E-23 1.9E-27 184.3 17.7 238 99-338 25-317 (386)
60 3o53_A Protein LRIM1, AGAP0063 99.9 2.4E-24 8.4E-29 187.7 7.6 241 100-380 28-270 (317)
61 1wwl_A Monocyte differentiatio 99.9 2.3E-25 7.8E-30 193.7 0.9 204 178-387 93-311 (312)
62 2ast_B S-phase kinase-associat 99.9 2.9E-22 9.8E-27 176.5 20.2 251 107-366 48-311 (336)
63 3zyi_A Leucine-rich repeat-con 99.9 2E-23 6.7E-28 191.2 13.0 228 106-337 75-303 (452)
64 3zyj_A Leucine-rich repeat-con 99.9 2.6E-23 9E-28 189.7 13.4 228 106-337 64-292 (440)
65 4fcg_A Uncharacterized protein 99.9 3.9E-24 1.3E-28 186.9 6.9 236 129-385 79-314 (328)
66 2z66_A Variable lymphocyte rec 99.9 1E-23 3.5E-28 183.1 8.5 230 106-338 28-262 (306)
67 1ozn_A Reticulon 4 receptor; N 99.9 5.3E-23 1.8E-27 176.6 12.8 268 109-383 14-285 (285)
68 4fcg_A Uncharacterized protein 99.9 1.6E-23 5.5E-28 183.0 8.4 236 104-361 79-314 (328)
69 3o53_A Protein LRIM1, AGAP0063 99.9 2.1E-23 7.2E-28 181.8 6.8 242 108-389 12-254 (317)
70 3goz_A Leucine-rich repeat-con 99.9 2E-22 6.8E-27 179.0 13.1 252 110-363 2-299 (362)
71 3oja_A Leucine-rich immune mol 99.9 5.2E-22 1.8E-26 182.7 12.3 233 132-379 35-269 (487)
72 1wwl_A Monocyte differentiatio 99.9 1.7E-23 5.8E-28 181.9 2.2 180 177-362 118-310 (312)
73 3goz_A Leucine-rich repeat-con 99.9 1.3E-21 4.5E-26 173.7 14.0 254 86-342 3-302 (362)
74 1jl5_A Outer protein YOPM; leu 99.9 5.4E-21 1.9E-25 174.2 16.8 285 56-386 90-410 (454)
75 3oja_A Leucine-rich immune mol 99.9 2.7E-22 9.2E-27 184.6 8.1 223 152-389 31-254 (487)
76 2z62_A TOLL-like receptor 4, v 99.9 2.2E-22 7.5E-27 171.9 5.2 205 155-361 28-237 (276)
77 3g06_A SSPH2 (leucine-rich rep 99.9 1.8E-20 6.2E-25 176.0 18.0 269 57-372 40-308 (622)
78 2o6q_A Variable lymphocyte rec 99.8 7.9E-22 2.7E-26 167.8 7.5 202 156-361 17-218 (270)
79 3g06_A SSPH2 (leucine-rich rep 99.8 2.3E-20 7.8E-25 175.3 18.0 266 81-393 40-305 (622)
80 1jl5_A Outer protein YOPM; leu 99.8 2.6E-21 8.8E-26 176.4 10.2 305 31-385 11-330 (454)
81 2o6q_A Variable lymphocyte rec 99.8 1.3E-20 4.4E-25 160.3 11.6 202 132-337 17-218 (270)
82 3rfs_A Internalin B, repeat mo 99.8 2.6E-21 9E-26 164.7 6.8 209 151-371 37-245 (272)
83 2z62_A TOLL-like receptor 4, v 99.8 5E-21 1.7E-25 163.5 8.4 203 132-336 29-236 (276)
84 1h6u_A Internalin H; cell adhe 99.8 2.1E-20 7.3E-25 161.8 12.1 195 151-362 37-231 (308)
85 4glp_A Monocyte differentiatio 99.8 2.6E-21 9.1E-26 168.0 4.8 204 179-387 90-309 (310)
86 1p9a_G Platelet glycoprotein I 99.8 1.5E-20 5.1E-25 161.2 7.6 203 151-361 6-208 (290)
87 3rfs_A Internalin B, repeat mo 99.8 6.6E-21 2.2E-25 162.2 5.2 210 128-349 38-247 (272)
88 1h6u_A Internalin H; cell adhe 99.8 5E-19 1.7E-23 153.2 14.7 193 129-338 39-231 (308)
89 1p9a_G Platelet glycoprotein I 99.8 2.6E-19 8.7E-24 153.5 10.6 203 127-337 6-208 (290)
90 4glp_A Monocyte differentiatio 99.8 2.5E-19 8.4E-24 155.6 8.7 227 105-362 63-308 (310)
91 2xwt_C Thyrotropin receptor; s 99.8 3.4E-20 1.2E-24 154.8 3.2 196 181-382 32-236 (239)
92 3m19_A Variable lymphocyte rec 99.8 1.4E-19 4.9E-24 152.1 5.9 180 180-362 14-193 (251)
93 2xwt_C Thyrotropin receptor; s 99.8 3.3E-19 1.1E-23 148.8 6.5 196 156-358 32-236 (239)
94 3m19_A Variable lymphocyte rec 99.8 1.2E-18 4.2E-23 146.3 8.1 181 155-339 14-194 (251)
95 1h6t_A Internalin B; cell adhe 99.7 1.2E-17 4.1E-22 143.3 9.4 174 176-363 42-215 (291)
96 4ezg_A Putative uncharacterize 99.7 9.8E-18 3.3E-22 135.3 7.9 151 228-386 44-195 (197)
97 1h6t_A Internalin B; cell adhe 99.7 9.3E-17 3.2E-21 137.7 11.8 174 151-339 42-215 (291)
98 4ezg_A Putative uncharacterize 99.7 1.8E-16 6.2E-21 127.8 11.4 152 178-361 42-194 (197)
99 1m9s_A Internalin B; cell inva 99.7 8.3E-17 2.8E-21 151.0 9.3 174 176-363 39-212 (605)
100 3sb4_A Hypothetical leucine ri 99.7 3.7E-17 1.3E-21 143.1 6.4 289 80-379 24-328 (329)
101 1m9s_A Internalin B; cell inva 99.7 6.8E-17 2.3E-21 151.6 8.0 176 151-341 39-214 (605)
102 3sb4_A Hypothetical leucine ri 99.6 1.1E-16 3.7E-21 140.1 6.1 284 56-355 24-328 (329)
103 3un9_A NLR family member X1; l 99.6 3.6E-15 1.2E-19 131.9 15.1 188 203-390 71-288 (372)
104 2o6s_A Variable lymphocyte rec 99.6 8.9E-17 3E-21 130.9 4.4 162 180-348 28-189 (208)
105 3un9_A NLR family member X1; l 99.6 5.6E-15 1.9E-19 130.6 16.3 186 179-364 71-286 (372)
106 2xot_A Amphoterin-induced prot 99.6 2.7E-16 9.3E-21 139.3 7.3 176 183-385 21-202 (361)
107 2o6s_A Variable lymphocyte rec 99.6 1.6E-16 5.6E-21 129.4 5.2 163 203-372 27-189 (208)
108 2v9t_B SLIT homolog 2 protein 99.6 2E-16 7E-21 129.7 4.9 152 207-361 14-165 (220)
109 2v70_A SLIT-2, SLIT homolog 2 99.6 4.3E-16 1.5E-20 127.8 5.1 152 207-361 14-166 (220)
110 1xeu_A Internalin C; cellular 99.6 3.8E-16 1.3E-20 131.7 4.2 170 179-363 18-187 (263)
111 3e6j_A Variable lymphocyte rec 99.6 7.2E-16 2.4E-20 127.3 5.6 152 206-361 21-172 (229)
112 2xot_A Amphoterin-induced prot 99.6 9E-16 3.1E-20 135.9 6.5 176 158-337 21-202 (361)
113 3cvr_A Invasion plasmid antige 99.6 1.8E-15 6.3E-20 140.4 8.8 189 156-373 60-255 (571)
114 2v9t_B SLIT homolog 2 protein 99.6 1.4E-15 4.6E-20 124.8 6.5 152 183-337 14-165 (220)
115 3cvr_A Invasion plasmid antige 99.6 5.3E-15 1.8E-19 137.3 10.5 188 131-347 59-253 (571)
116 2v70_A SLIT-2, SLIT homolog 2 99.6 4.1E-15 1.4E-19 121.9 8.1 153 183-338 14-167 (220)
117 1xeu_A Internalin C; cellular 99.6 2.2E-15 7.6E-20 127.1 5.9 170 154-339 18-187 (263)
118 2je0_A Acidic leucine-rich nuc 99.5 6.9E-15 2.4E-19 112.9 6.8 128 252-381 17-149 (149)
119 4ay9_X Follicle-stimulating ho 99.5 1E-15 3.6E-20 135.0 2.0 183 57-241 30-215 (350)
120 3e6j_A Variable lymphocyte rec 99.5 9E-15 3.1E-19 120.7 7.0 153 182-338 21-173 (229)
121 2ell_A Acidic leucine-rich nuc 99.5 3.5E-15 1.2E-19 117.0 3.8 133 252-386 24-161 (168)
122 1dce_A Protein (RAB geranylger 99.5 2E-16 7E-21 147.5 -4.4 196 177-378 346-566 (567)
123 4ay9_X Follicle-stimulating ho 99.5 1.1E-14 3.9E-19 128.3 5.9 222 106-334 30-256 (350)
124 2je0_A Acidic leucine-rich nuc 99.5 4.5E-14 1.5E-18 108.3 7.7 127 228-356 17-148 (149)
125 4fdw_A Leucine rich hypothetic 99.5 1.9E-14 6.5E-19 128.5 6.2 218 156-383 158-381 (401)
126 4fdw_A Leucine rich hypothetic 99.5 4.4E-14 1.5E-18 126.1 8.4 267 79-361 111-383 (401)
127 2ell_A Acidic leucine-rich nuc 99.5 3.7E-14 1.3E-18 111.2 5.8 132 228-361 24-160 (168)
128 4fs7_A Uncharacterized protein 99.4 3.4E-14 1.2E-18 127.4 4.6 218 151-381 158-375 (394)
129 1dce_A Protein (RAB geranylger 99.4 1.6E-15 5.5E-20 141.5 -4.2 181 201-387 346-548 (567)
130 1a9n_A U2A', U2A'; complex (nu 99.4 8E-14 2.7E-18 110.1 5.1 132 226-361 17-153 (176)
131 4fs7_A Uncharacterized protein 99.4 3.1E-13 1.1E-17 121.2 6.6 238 125-377 156-393 (394)
132 1w8a_A SLIT protein; signaling 99.4 9.8E-14 3.4E-18 111.1 3.0 128 231-361 11-139 (192)
133 2o6r_A Variable lymphocyte rec 99.4 6.4E-13 2.2E-17 105.0 6.2 129 231-362 10-138 (177)
134 1a9n_A U2A', U2A'; complex (nu 99.4 8.8E-13 3E-17 104.1 6.9 133 250-386 17-154 (176)
135 2ra8_A Uncharacterized protein 99.4 5.2E-12 1.8E-16 110.7 12.4 145 248-395 168-330 (362)
136 1ds9_A Outer arm dynein; leuci 99.4 1.1E-14 3.7E-19 117.4 -4.8 134 247-387 43-187 (198)
137 1w8a_A SLIT protein; signaling 99.3 6.9E-13 2.4E-17 106.1 5.0 129 207-338 11-140 (192)
138 2wfh_A SLIT homolog 2 protein 99.3 6.1E-13 2.1E-17 106.4 4.6 127 231-361 13-139 (193)
139 4gt6_A Cell surface protein; l 99.3 5.4E-12 1.8E-16 113.1 9.7 311 58-384 65-390 (394)
140 2o6r_A Variable lymphocyte rec 99.3 2.9E-12 9.9E-17 101.2 6.9 129 207-338 10-138 (177)
141 2wfh_A SLIT homolog 2 protein 99.3 4.8E-12 1.7E-16 101.2 7.0 127 207-337 13-139 (193)
142 1ds9_A Outer arm dynein; leuci 99.3 6E-14 2E-18 113.1 -4.7 133 222-361 42-185 (198)
143 3e4g_A ATP synthase subunit S, 99.3 9.8E-12 3.3E-16 95.7 7.5 88 301-388 62-156 (176)
144 4b8c_D Glucose-repressible alc 99.2 1.2E-12 4.1E-17 126.0 1.2 115 224-342 220-334 (727)
145 1io0_A Tropomodulin; LRR prote 99.2 1.9E-10 6.5E-15 91.1 13.7 120 269-388 29-167 (185)
146 4b8c_D Glucose-repressible alc 99.2 7.4E-13 2.5E-17 127.4 -0.4 117 199-319 219-335 (727)
147 2ra8_A Uncharacterized protein 99.2 2.3E-10 7.8E-15 100.2 14.4 158 222-383 166-341 (362)
148 3e4g_A ATP synthase subunit S, 99.2 4.7E-11 1.6E-15 91.9 7.4 90 57-146 61-154 (176)
149 3g39_A Variable lymphocyte rec 99.1 2.1E-11 7.3E-16 95.3 3.8 105 254-361 11-115 (170)
150 4gt6_A Cell surface protein; l 99.1 1.8E-10 6.2E-15 103.1 9.2 313 27-359 58-389 (394)
151 2r9u_A Variable lymphocyte rec 99.1 4.4E-11 1.5E-15 93.8 3.8 104 255-361 15-118 (174)
152 4h09_A Hypothetical leucine ri 99.0 2.9E-10 1E-14 101.3 6.8 301 55-372 44-356 (379)
153 1io0_A Tropomodulin; LRR prote 99.0 4.4E-09 1.5E-13 83.2 12.7 118 247-364 31-167 (185)
154 3g39_A Variable lymphocyte rec 99.0 2.8E-10 9.5E-15 88.9 5.3 106 230-338 11-116 (170)
155 2r9u_A Variable lymphocyte rec 99.0 3.9E-10 1.3E-14 88.3 5.4 105 231-338 15-119 (174)
156 4h09_A Hypothetical leucine ri 99.0 5.5E-10 1.9E-14 99.5 7.0 292 75-382 40-343 (379)
157 2ifg_A High affinity nerve gro 98.8 3.9E-09 1.3E-13 92.8 5.3 103 256-361 12-116 (347)
158 2ifg_A High affinity nerve gro 98.7 2.9E-08 1E-12 87.2 6.5 104 232-338 12-117 (347)
159 1pgv_A TMD-1, tropomodulin TMD 98.4 2.8E-06 9.6E-11 66.6 10.6 118 269-386 34-171 (197)
160 1pgv_A TMD-1, tropomodulin TMD 98.4 5.4E-06 1.8E-10 65.0 12.0 118 245-362 34-171 (197)
161 3rw6_A Nuclear RNA export fact 98.2 1.7E-06 5.9E-11 71.8 4.9 79 299-378 169-257 (267)
162 3rw6_A Nuclear RNA export fact 97.9 3.1E-05 1.1E-09 64.2 8.4 88 50-139 163-259 (267)
163 3rfe_A Platelet glycoprotein I 95.0 0.0093 3.2E-07 43.4 1.8 55 304-361 12-68 (130)
164 3rfe_A Platelet glycoprotein I 93.0 0.087 3E-06 38.2 3.7 56 280-337 12-68 (130)
165 2lz0_A Uncharacterized protein 76.0 0.77 2.6E-05 31.3 0.7 45 69-115 8-52 (100)
166 2lz0_A Uncharacterized protein 71.6 1.7 5.9E-05 29.5 1.7 40 293-333 13-52 (100)
No 1
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=4.1e-33 Score=256.76 Aligned_cols=360 Identities=23% Similarity=0.268 Sum_probs=272.3
Q ss_pred ceeEeccCCCCCCCchHHHHHHhcCCCccEEEeecCCCChHH----HHHhhCCCCCCeeeccCCcccChhHHHhhh-CCC
Q 016017 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSG----LIHLKDCSNLQSLDFNFCIQISDGGLEHLR-GLS 106 (396)
Q Consensus 32 ~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~----~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~-~~~ 106 (396)
+++.+++.++ .+.+.....+...++++++|+++++.+++.. ...+..+++|++|+++++ .+.+..+..+. .++
T Consensus 4 ~l~~L~Ls~~-~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 4 DIQSLDIQCE-ELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN-ELGDVGVHCVLQGLQ 81 (461)
T ss_dssp EEEEEEEESC-CCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHHHHHTTC
T ss_pred cceehhhhhc-ccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCC-cCChHHHHHHHHHHh
Confidence 4677888666 4666666666677899999999999998654 355677899999999986 56665555443 454
Q ss_pred ----CCcEEeccCCcccc---HHHHHHHhCCCCCcEecccccccccCcccc-----cCCCCcccEEecCCCCCccccc--
Q 016017 107 ----NLTSLSFRRNNAIT---AQGMKAFAGLINLVKLDLERCTRIHGGLVN-----LKGLMKLESLNIKWCNCITDSD-- 172 (396)
Q Consensus 107 ----~L~~L~l~~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-----l~~~~~L~~L~l~~~~~~~~~~-- 172 (396)
+|++|++++|.... ...+..+..+++|++|++++|......+.. ....++|++|+++++. ++...
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~ 160 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCS-LSAASCE 160 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHH
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCC-CCHHHHH
Confidence 69999999997432 234667788999999999998654333332 2335689999999854 44333
Q ss_pred --cccccCCCCccEEEeecCCCChhHHHhcc-----CCCCCCEEEecCCCCChh----hHHHHhcCCCCCEEECCCCCCC
Q 016017 173 --MKPLSGLTNLKSLQISCSKVTDSGIAYLK-----GLQKLTLLNLEGCPVTAA----CLDSLSALGSLFYLNLNRCQLS 241 (396)
Q Consensus 173 --~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~ 241 (396)
...+..+++|++|++++|.+.+.....+. ..++|+.|++++|.+... .+..+..+++|+.|++++|.+.
T Consensus 161 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 240 (461)
T 1z7x_W 161 PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 240 (461)
T ss_dssp HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred HHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCC
Confidence 34456779999999999988876555443 367999999999988763 3566678899999999999877
Q ss_pred hHHHHhh-----hcCCCCcEEEccCCcCcHH----HHHHhhCCCCCCEEeccCCCCChhHhHHHhC-----CCCccEEEc
Q 016017 242 DDGCEKF-----SKIGSLKVLNLGFNEITDE----CLVHLKGLTNLESLNLDSCGIGDEGLVNLTG-----LCNLKCLEL 307 (396)
Q Consensus 242 ~~~~~~l-----~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~L~l 307 (396)
+.....+ ..+++|+.|++++|.+... .+..+..+++|++|++++|.+.+.++..+.. .++|++|++
T Consensus 241 ~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L 320 (461)
T 1z7x_W 241 DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWV 320 (461)
T ss_dssp HHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred hHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEc
Confidence 6543333 2578999999999988764 3555677899999999999887766655543 369999999
Q ss_pred CCCCCCchhH----HhhcCCCCCCEEeccCcccChhhhHhhhC-----CCCCCEeecCCCCCcH----HHHHHHhcCccC
Q 016017 308 SDTQVGSSGL----RHLSGLTNLESINLSFTGISDGSLRKLAG-----LSSLKSLNLDARQITD----TGLAALTSLTGL 374 (396)
Q Consensus 308 ~~~~~~~~~~----~~l~~~~~L~~L~l~~~~~~~~~~~~l~~-----~~~L~~L~l~~~~l~~----~~~~~l~~~~~L 374 (396)
++|.+++... ..+..+++|++|++++|.+++..+..+.. .++|+.|++++|.+++ ..+..+..+++|
T Consensus 321 ~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L 400 (461)
T 1z7x_W 321 KSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSL 400 (461)
T ss_dssp TTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCC
T ss_pred CCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCc
Confidence 9999887643 34467799999999999988876665553 6799999999999996 445667788999
Q ss_pred CeeecCCCccChHHHHHHHh
Q 016017 375 THLDLFGARITDSGAAYLRS 394 (396)
Q Consensus 375 ~~l~l~~~~l~~~~~~~l~~ 394 (396)
++|++++|++++.++..+.+
T Consensus 401 ~~L~l~~N~i~~~~~~~l~~ 420 (461)
T 1z7x_W 401 RELDLSNNCLGDAGILQLVE 420 (461)
T ss_dssp CEEECCSSSCCHHHHHHHHH
T ss_pred cEEECCCCCCCHHHHHHHHH
Confidence 99999999999998888765
No 2
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.4e-35 Score=272.73 Aligned_cols=330 Identities=24% Similarity=0.223 Sum_probs=212.8
Q ss_pred CCccEEEeecCCCChHHHHHhhCCCCCCeeeccCCcccChhHHHhhhCCCCCcEEeccCCccccHHHHHHHhCCCCCcEe
Q 016017 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136 (396)
Q Consensus 57 ~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 136 (396)
+++++|+++++.+++..+..++++++|++|+++++.......+..+.++++|++|++++|.. ....+..++.+++|++|
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L 108 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF-LQLETGAFNGLANLEVL 108 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTT-CEECTTTTTTCTTCCEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCcc-CccChhhccCcccCCEE
Confidence 45555555555555444444555555555555554211122233445555555555555542 22223344555555555
Q ss_pred cccccccccCcccc--cCCCCcccEEecCCCCCcccccccc-ccCCCCccEEEeecCCCChhHHHhcc------------
Q 016017 137 DLERCTRIHGGLVN--LKGLMKLESLNIKWCNCITDSDMKP-LSGLTNLKSLQISCSKVTDSGIAYLK------------ 201 (396)
Q Consensus 137 ~l~~~~~~~~~~~~--l~~~~~L~~L~l~~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~~~------------ 201 (396)
++++|......+.. +..+++|++|+++++. ++...+.. +..+++|++|++++|.+....+..+.
T Consensus 109 ~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l 187 (455)
T 3v47_A 109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRL 187 (455)
T ss_dssp ECTTSCCBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEEC
T ss_pred eCCCCCCCccccCcccccCcccCCEEECCCCc-cCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccc
Confidence 55554332211221 4455555555555532 22222222 44555555555555544433332222
Q ss_pred ----------------------CCCCCCEEEecCCCCChhhHHHHhcC---CCCCEEECCCCCCChHH----------HH
Q 016017 202 ----------------------GLQKLTLLNLEGCPVTAACLDSLSAL---GSLFYLNLNRCQLSDDG----------CE 246 (396)
Q Consensus 202 ----------------------~~~~L~~L~l~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~~~----------~~ 246 (396)
.+++|+.|++++|.+....+..+... ++|+.++++++...... ..
T Consensus 188 ~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 267 (455)
T 3v47_A 188 SSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNF 267 (455)
T ss_dssp TTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTT
T ss_pred ccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccc
Confidence 33566666776666665544444332 66666666655322110 01
Q ss_pred hhh--cCCCCcEEEccCCcCcHHHHHHhhCCCCCCEEeccCCCCChhHhHHHhCCCCccEEEcCCCCCCchhHHhhcCCC
Q 016017 247 KFS--KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT 324 (396)
Q Consensus 247 ~l~--~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~ 324 (396)
.+. ..++|+.|++++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.++...+..+..++
T Consensus 268 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 347 (455)
T 3v47_A 268 TFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLD 347 (455)
T ss_dssp TTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCT
T ss_pred ccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcc
Confidence 111 236899999999988877677788999999999999999887777888999999999999999888778888999
Q ss_pred CCCEEeccCcccChhhhHhhhCCCCCCEeecCCCCCcHHHHHHHhcCccCCeeecCCCccChHH
Q 016017 325 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 388 (396)
Q Consensus 325 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~l~~~~ 388 (396)
+|++|++++|.+++..+..+..+++|+.|++++|++++..+..+..+++|++|++++|+++...
T Consensus 348 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 411 (455)
T 3v47_A 348 KLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 411 (455)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred cCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCC
Confidence 9999999999999887888899999999999999999876667789999999999999987754
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=8.3e-36 Score=290.16 Aligned_cols=349 Identities=19% Similarity=0.211 Sum_probs=236.3
Q ss_pred ceeEeccCCCC--CCCchHHHHHHhcCCCccEEEeecCCCChHHHHHhhCCCCCCeeeccCCcccC-hhHHHhhhCCCCC
Q 016017 32 ALQDLCLGQYP--GVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQIS-DGGLEHLRGLSNL 108 (396)
Q Consensus 32 ~l~~l~l~~~~--~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~l~~~~~L 108 (396)
.++.+.+.++. +....+ +...+++|++|+++++.+++..+..+..+++|++|+++++ .+. ......+.++++|
T Consensus 270 ~L~~L~L~~n~l~~~ip~~---~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~ip~~~l~~l~~L 345 (768)
T 3rgz_A 270 SLQYLSLAENKFTGEIPDF---LSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSN-NFSGELPMDTLLKMRGL 345 (768)
T ss_dssp TCCEEECCSSEEEESCCCC---SCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSS-EEEEECCHHHHTTCTTC
T ss_pred CCCEEECcCCccCCccCHH---HHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCC-cccCcCCHHHHhcCCCC
Confidence 56667766663 111111 1122467777777777766666666677777777777765 333 2223336667777
Q ss_pred cEEeccCCccccHHHHHHHhC---------------------------CCCCcEecccccccccCcccccCCCCcccEEe
Q 016017 109 TSLSFRRNNAITAQGMKAFAG---------------------------LINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161 (396)
Q Consensus 109 ~~L~l~~~~~~~~~~~~~~~~---------------------------~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 161 (396)
++|++++|... ...+..+.. +++|++|++++|......+..+..+++|+.|+
T Consensus 346 ~~L~Ls~n~l~-~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 424 (768)
T 3rgz_A 346 KVLDLSFNEFS-GELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLH 424 (768)
T ss_dssp CEEECCSSEEE-ECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEE
T ss_pred CEEeCcCCccC-ccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEE
Confidence 77777766532 112222332 34455555555544434444566667777777
Q ss_pred cCCCCCccccccccccCCCCccEEEeecCCCChhHHHhccCCCCCCEEEecCCCCChhhHHHHhcCCCCCEEECCCCCCC
Q 016017 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241 (396)
Q Consensus 162 l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 241 (396)
++++ .+++..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.
T Consensus 425 Ls~N-~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 503 (768)
T 3rgz_A 425 LSFN-YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLT 503 (768)
T ss_dssp CCSS-EEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCC
T ss_pred CcCC-cccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccC
Confidence 7763 344455666777777777777777777666666777777777887777776655666777788888888877777
Q ss_pred hHHHHhhhcCCCCcEEEccCCcCcHHHHHHhhCCCCCCEEeccCCCCChhHhHH--------------------------
Q 016017 242 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN-------------------------- 295 (396)
Q Consensus 242 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-------------------------- 295 (396)
+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..|..
T Consensus 504 ~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (768)
T 3rgz_A 504 GEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGM 583 (768)
T ss_dssp SCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSC
T ss_pred CcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccc
Confidence 666667777778888888887776666667777788888888777554222211
Q ss_pred --------------------------------------------HhCCCCccEEEcCCCCCCchhHHhhcCCCCCCEEec
Q 016017 296 --------------------------------------------LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 331 (396)
Q Consensus 296 --------------------------------------------~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 331 (396)
+..+++|+.|++++|++++..+..+..++.|+.|++
T Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~L 663 (768)
T 3rgz_A 584 KKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNL 663 (768)
T ss_dssp CTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEEC
T ss_pred cccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeC
Confidence 223456788888888887777777888888888888
Q ss_pred cCcccChhhhHhhhCCCCCCEeecCCCCCcHHHHHHHhcCccCCeeecCCCccCh
Q 016017 332 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386 (396)
Q Consensus 332 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~l~~ 386 (396)
++|.+++.++..++++++|+.|++++|++++..|..+.++++|++|++++|++++
T Consensus 664 s~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g 718 (768)
T 3rgz_A 664 GHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSG 718 (768)
T ss_dssp CSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEE
T ss_pred cCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccc
Confidence 8888888888888888888888888888887778888888888888888887764
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=4.3e-36 Score=292.19 Aligned_cols=348 Identities=21% Similarity=0.151 Sum_probs=271.4
Q ss_pred ceeEeccCCCCC--CCchHHHHHHhcCCCccEEEeecCCCChHHHHHhhC-CCCCCeeeccCCcccChhHHHhhhCCCCC
Q 016017 32 ALQDLCLGQYPG--VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKD-CSNLQSLDFNFCIQISDGGLEHLRGLSNL 108 (396)
Q Consensus 32 ~l~~l~l~~~~~--~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~~~~~~~l~~~~~L 108 (396)
+++.+.+..|.- ....+ .+++|++|+++++.+++..+..+.. +++|++|+++++ .+.+..+..++.+++|
T Consensus 248 ~L~~L~Ls~n~l~~~~~~~------~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n-~l~~~~p~~~~~l~~L 320 (768)
T 3rgz_A 248 ELKLLNISSNQFVGPIPPL------PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGN-HFYGAVPPFFGSCSLL 320 (768)
T ss_dssp SCCEEECCSSCCEESCCCC------CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSS-EEEECCCGGGGGCTTC
T ss_pred CCCEEECCCCcccCccCcc------ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCC-cCCCccchHHhcCCCc
Confidence 688999988852 11121 6789999999999988777766665 599999999997 5676677889999999
Q ss_pred cEEeccCCccccHHHHHHHhCCCCCcEecccccccccCcccccCCC---------------------------CcccEEe
Q 016017 109 TSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGL---------------------------MKLESLN 161 (396)
Q Consensus 109 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~---------------------------~~L~~L~ 161 (396)
++|++++|..........+..+++|++|++++|......+..+..+ ++|+.|+
T Consensus 321 ~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~ 400 (768)
T 3rgz_A 321 ESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY 400 (768)
T ss_dssp CEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEE
T ss_pred cEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEE
Confidence 9999999985434444568999999999999986554444433333 4455555
Q ss_pred cCCCCCccccccccccCCCCccEEEeecCCCChhHHHhccCCCCCCEEEecCCCCChhhHHHHhcCCCCCEEECCCCCCC
Q 016017 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241 (396)
Q Consensus 162 l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 241 (396)
+.++ .+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.
T Consensus 401 L~~n-~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~ 479 (768)
T 3rgz_A 401 LQNN-GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLT 479 (768)
T ss_dssp CCSS-EEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCC
T ss_pred CCCC-ccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCccc
Confidence 5552 233345556777788888888888777666677788888888888888777666777778888888888888877
Q ss_pred hHHHHhhhcCCCCcEEEccCCcCcHHHHHHhhCCCCCCEEeccCCCCChhHhHHHhCCCCccEEEcCCCCCCchhHHh--
Q 016017 242 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH-- 319 (396)
Q Consensus 242 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-- 319 (396)
+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..+..
T Consensus 480 ~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~ 559 (768)
T 3rgz_A 480 GEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMF 559 (768)
T ss_dssp SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGG
T ss_pred CcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHh
Confidence 666777888888889988888887666777888889999999988887777777888889999999888664322211
Q ss_pred --------------------------------------------------------------------hcCCCCCCEEec
Q 016017 320 --------------------------------------------------------------------LSGLTNLESINL 331 (396)
Q Consensus 320 --------------------------------------------------------------------l~~~~~L~~L~l 331 (396)
+..+++|+.|++
T Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdL 639 (768)
T 3rgz_A 560 KQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDM 639 (768)
T ss_dssp TTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEEC
T ss_pred cccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEEC
Confidence 223577889999
Q ss_pred cCcccChhhhHhhhCCCCCCEeecCCCCCcHHHHHHHhcCccCCeeecCCCccChH
Q 016017 332 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 387 (396)
Q Consensus 332 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~l~~~ 387 (396)
++|.+++.++..+++++.|+.|++++|.+++..|..++++++|+.|++++|++++.
T Consensus 640 s~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ 695 (768)
T 3rgz_A 640 SYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGR 695 (768)
T ss_dssp CSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEC
T ss_pred cCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCc
Confidence 99999888888899999999999999999988888999999999999999988754
No 5
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=4.1e-32 Score=240.55 Aligned_cols=306 Identities=28% Similarity=0.342 Sum_probs=248.7
Q ss_pred cCCCccEEEeecCCCChHHHHHhhCCCCCCeeeccCCcccChhHHHhhhCCCCCcEEeccCCccccHHHHHHHhCCCCCc
Q 016017 55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134 (396)
Q Consensus 55 ~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 134 (396)
.++++++|+++++.+++. ..+..+++|++|++++| .+.+... +..+++|++|++++|.... . ..+..+++|+
T Consensus 42 ~l~~L~~L~l~~~~i~~~--~~~~~~~~L~~L~l~~n-~i~~~~~--~~~l~~L~~L~L~~n~i~~-~--~~~~~l~~L~ 113 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASI--QGIEYLTNLEYLNLNGN-QITDISP--LSNLVKLTNLYIGTNKITD-I--SALQNLTNLR 113 (347)
T ss_dssp HHTTCSEEECCSSCCCCC--TTGGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCC-C--GGGTTCTTCS
T ss_pred hcccccEEEEeCCccccc--hhhhhcCCccEEEccCC-ccccchh--hhcCCcCCEEEccCCcccC-c--hHHcCCCcCC
Confidence 467899999998888653 34778899999999987 4555433 7889999999999987433 2 3578899999
Q ss_pred EecccccccccCcccccCCCCcccEEecCCCCCccccccccccCCCCccEEEeecCCCChhHHHhccCCCCCCEEEecCC
Q 016017 135 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 214 (396)
Q Consensus 135 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 214 (396)
+|++++|..... ..+..+++|+.|+++++..... ...+..+++|++|++++|.+..... +..+++|+.|++++|
T Consensus 114 ~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n 187 (347)
T 4fmz_A 114 ELYLNEDNISDI--SPLANLTKMYSLNLGANHNLSD--LSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYN 187 (347)
T ss_dssp EEECTTSCCCCC--GGGTTCTTCCEEECTTCTTCCC--CGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTS
T ss_pred EEECcCCcccCc--hhhccCCceeEEECCCCCCccc--ccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCC
Confidence 999998764332 2278889999999998755553 3447889999999999998876543 788999999999999
Q ss_pred CCChhhHHHHhcCCCCCEEECCCCCCChHHHHhhhcCCCCcEEEccCCcCcHHHHHHhhCCCCCCEEeccCCCCChhHhH
Q 016017 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294 (396)
Q Consensus 215 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 294 (396)
.+..... +..+++|+.++++++.+....+ +..+++|+.|++++|.+....+ +..+++|++|++++|.+... .
T Consensus 188 ~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~ 259 (347)
T 4fmz_A 188 QIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--N 259 (347)
T ss_dssp CCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--G
T ss_pred ccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--h
Confidence 8876433 7789999999999998776543 7889999999999998876543 78899999999999988764 4
Q ss_pred HHhCCCCccEEEcCCCCCCchhHHhhcCCCCCCEEeccCcccChhhhHhhhCCCCCCEeecCCCCCcHHHHHHHhcCccC
Q 016017 295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 374 (396)
Q Consensus 295 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L 374 (396)
.+..+++|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|+.|++++|++++..+ +..+++|
T Consensus 260 ~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L 335 (347)
T 4fmz_A 260 AVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKM 335 (347)
T ss_dssp GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTC
T ss_pred hHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhcc
Confidence 578899999999999998875 457789999999999999998888889999999999999999998655 8899999
Q ss_pred CeeecCCCccCh
Q 016017 375 THLDLFGARITD 386 (396)
Q Consensus 375 ~~l~l~~~~l~~ 386 (396)
++|++++|+++.
T Consensus 336 ~~L~l~~N~i~~ 347 (347)
T 4fmz_A 336 DSADFANQVIKK 347 (347)
T ss_dssp SEESSSCC----
T ss_pred ceeehhhhcccC
Confidence 999999999863
No 6
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=1.9e-31 Score=245.64 Aligned_cols=336 Identities=23% Similarity=0.331 Sum_probs=263.3
Q ss_pred CCCccEEEeecCCCChHHHHH-hhCCCCCCeeeccCCcccChhH----HHhhhCCCCCcEEeccCCccccHHHHHHH-hC
Q 016017 56 GSSLLSVDLSGSDVTDSGLIH-LKDCSNLQSLDFNFCIQISDGG----LEHLRGLSNLTSLSFRRNNAITAQGMKAF-AG 129 (396)
Q Consensus 56 ~~~l~~L~l~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~----~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-~~ 129 (396)
++++++|+++++++++..... +..+++|++|++++| .+.+.. +..+..+++|++|++++|. +....+..+ ..
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~ 79 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCVLQG 79 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESS-CCCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHHHT
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCC-CCCHHHHHHHHHHHHhCCCcCEEeCCCCc-CChHHHHHHHHH
Confidence 468999999999998877655 678999999999998 566543 4456788999999999987 455444444 34
Q ss_pred CC----CCcEecccccccccCc----ccccCCCCcccEEecCCCCCcccccccccc-----CCCCccEEEeecCCCChhH
Q 016017 130 LI----NLVKLDLERCTRIHGG----LVNLKGLMKLESLNIKWCNCITDSDMKPLS-----GLTNLKSLQISCSKVTDSG 196 (396)
Q Consensus 130 ~~----~L~~L~l~~~~~~~~~----~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~-----~~~~L~~L~l~~~~~~~~~ 196 (396)
++ +|++|++++|...... +..+..+++|++|+++++. ++......+. ..++|++|++++|.++...
T Consensus 80 l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 158 (461)
T 1z7x_W 80 LQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAAS 158 (461)
T ss_dssp TCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG
T ss_pred HhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCCCHHH
Confidence 55 7999999998755432 4557899999999999855 4443333332 3568999999999988754
Q ss_pred ----HHhccCCCCCCEEEecCCCCChhhHHHHh-----cCCCCCEEECCCCCCChHH----HHhhhcCCCCcEEEccCCc
Q 016017 197 ----IAYLKGLQKLTLLNLEGCPVTAACLDSLS-----ALGSLFYLNLNRCQLSDDG----CEKFSKIGSLKVLNLGFNE 263 (396)
Q Consensus 197 ----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~~----~~~l~~~~~L~~L~l~~~~ 263 (396)
...+..+++|+.|++++|.+.......+. ..++|+.|++++|.+.... +..+..+++|+.|++++|.
T Consensus 159 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 238 (461)
T 1z7x_W 159 CEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK 238 (461)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB
T ss_pred HHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc
Confidence 44556789999999999988765444443 3679999999999988753 5566788999999999998
Q ss_pred CcHHHHHH-----hhCCCCCCEEeccCCCCChhH----hHHHhCCCCccEEEcCCCCCCchhHHhhc-----CCCCCCEE
Q 016017 264 ITDECLVH-----LKGLTNLESLNLDSCGIGDEG----LVNLTGLCNLKCLELSDTQVGSSGLRHLS-----GLTNLESI 329 (396)
Q Consensus 264 ~~~~~~~~-----l~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-----~~~~L~~L 329 (396)
+.+..... +..+++|++|++++|.+++.+ +..+..+++|++|++++|.+++.+...+. ..++|++|
T Consensus 239 l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L 318 (461)
T 1z7x_W 239 LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESL 318 (461)
T ss_dssp CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred CChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceee
Confidence 87643322 235899999999999998764 44566689999999999999877665553 34799999
Q ss_pred eccCcccChhh----hHhhhCCCCCCEeecCCCCCcHHHHHHHhc-----CccCCeeecCCCccChHHHHHHHh
Q 016017 330 NLSFTGISDGS----LRKLAGLSSLKSLNLDARQITDTGLAALTS-----LTGLTHLDLFGARITDSGAAYLRS 394 (396)
Q Consensus 330 ~l~~~~~~~~~----~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~-----~~~L~~l~l~~~~l~~~~~~~l~~ 394 (396)
++++|.+++.. +..+..+++|+.|++++|.+++.++..+.. .++|++|++++|++++.++..+..
T Consensus 319 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~ 392 (461)
T 1z7x_W 319 WVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAA 392 (461)
T ss_dssp ECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH
T ss_pred EcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHH
Confidence 99999998764 445567899999999999999887766653 679999999999999988777654
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.6e-33 Score=268.12 Aligned_cols=233 Identities=23% Similarity=0.287 Sum_probs=114.2
Q ss_pred cCCCCcccEEecCCCCCccccccccccCCCCccEEEeecCCCChhHHHhccCCCCCCEEEecCCCCChhh-HHHHhcCCC
Q 016017 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC-LDSLSALGS 229 (396)
Q Consensus 151 l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~ 229 (396)
+..+++|+.|+++++. ++ ..+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+.... ...+..+++
T Consensus 274 ~~~l~~L~~L~l~~n~-l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~ 351 (606)
T 3t6q_A 274 FHCFSGLQELDLTATH-LS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLEN 351 (606)
T ss_dssp TTTCTTCSEEECTTSC-CS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTT
T ss_pred hccccCCCEEeccCCc-cC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCc
Confidence 3445566666666532 22 23344556666666666666666554455555566666666555443211 122444555
Q ss_pred CCEEECCCCCCChHH--HHhhhcCCCCcEEEccCCcCcHHHHHHhhCCCCCCEEeccCC---------------------
Q 016017 230 LFYLNLNRCQLSDDG--CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC--------------------- 286 (396)
Q Consensus 230 L~~L~l~~~~~~~~~--~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~--------------------- 286 (396)
|+.|++++|.+.... +..+..+++|+.|++++|.+....+..+..+++|+.|++++|
T Consensus 352 L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 431 (606)
T 3t6q_A 352 LRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLN 431 (606)
T ss_dssp CCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEE
T ss_pred CCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEE
Confidence 555555555444332 233444555555555555443333333444444444444444
Q ss_pred ----CCChhHhHHHhCCCCccEEEcCCCCCCchh---HHhhcCCCCCCEEeccCcccChhhhHhhhCCCCCCEeecCCCC
Q 016017 287 ----GIGDEGLVNLTGLCNLKCLELSDTQVGSSG---LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 359 (396)
Q Consensus 287 ----~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 359 (396)
.+....+..+..+++|++|++++|.+++.. ...+..+++|++|++++|.+++..+..+..+++|+.|++++|+
T Consensus 432 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 511 (606)
T 3t6q_A 432 LSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNR 511 (606)
T ss_dssp CTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCc
Confidence 443333333444444555555444443311 1223444555555555555554444444555555555555555
Q ss_pred CcHHHHHHHhcCccCCeeecCCCccCh
Q 016017 360 ITDTGLAALTSLTGLTHLDLFGARITD 386 (396)
Q Consensus 360 l~~~~~~~l~~~~~L~~l~l~~~~l~~ 386 (396)
+++..+..+.++++| .|++++|+++.
T Consensus 512 l~~~~~~~l~~l~~L-~L~L~~N~l~~ 537 (606)
T 3t6q_A 512 LTSSSIEALSHLKGI-YLNLASNHISI 537 (606)
T ss_dssp CCGGGGGGGTTCCSC-EEECCSSCCCC
T ss_pred cCcCChhHhCccccc-EEECcCCcccc
Confidence 555444555555555 55555555543
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.7e-33 Score=268.01 Aligned_cols=282 Identities=22% Similarity=0.229 Sum_probs=216.9
Q ss_pred hhCCCCCcEEeccCCccccHHHHHHHhCCCCCcEecccccccccCcccccCCCCcccEEecCCCCCccccccccccCCCC
Q 016017 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181 (396)
Q Consensus 102 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 181 (396)
++.+++|++|++++|.. . ..+..+..+++|++|++++|......+..+..+++|+.|+++++..........+..+++
T Consensus 274 ~~~l~~L~~L~l~~n~l-~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~ 351 (606)
T 3t6q_A 274 FHCFSGLQELDLTATHL-S-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLEN 351 (606)
T ss_dssp TTTCTTCSEEECTTSCC-S-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTT
T ss_pred hccccCCCEEeccCCcc-C-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCc
Confidence 34455666666666653 2 223345556666666666655443334456666677777776644333333445667788
Q ss_pred ccEEEeecCCCChhH--HHhccCCCCCCEEEecCCCCChhhHHHHhcCCCCCEEECCCCCCChHHH-HhhhcCCCCcEEE
Q 016017 182 LKSLQISCSKVTDSG--IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC-EKFSKIGSLKVLN 258 (396)
Q Consensus 182 L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~ 258 (396)
|++|++++|.+.... +..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+ ..+..+++|+.|+
T Consensus 352 L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 431 (606)
T 3t6q_A 352 LRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLN 431 (606)
T ss_dssp CCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEE
T ss_pred CCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEE
Confidence 888888888777654 4567788888889988888776666677788999999999888665433 3477889999999
Q ss_pred ccCCcCcHHHHHHhhCCCCCCEEeccCCCCChhH---hHHHhCCCCccEEEcCCCCCCchhHHhhcCCCCCCEEeccCcc
Q 016017 259 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG---LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 335 (396)
Q Consensus 259 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 335 (396)
+++|.+....+..+..+++|++|++++|.+.+.. +..+..+++|+.|++++|.+++..+..+..+++|++|++++|.
T Consensus 432 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 511 (606)
T 3t6q_A 432 LSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNR 511 (606)
T ss_dssp CTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCc
Confidence 9999887766777889999999999999887532 2457889999999999999998878888999999999999999
Q ss_pred cChhhhHhhhCCCCCCEeecCCCCCcHHHHHHHhcCccCCeeecCCCccCh
Q 016017 336 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386 (396)
Q Consensus 336 ~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~l~~ 386 (396)
+++..+..+..++.| .|++++|.+++..+..+..+++|+.+++++|+++.
T Consensus 512 l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 561 (606)
T 3t6q_A 512 LTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561 (606)
T ss_dssp CCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEEC
T ss_pred cCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccc
Confidence 999889999999999 99999999998777788889999999999998864
No 9
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=9.2e-33 Score=255.24 Aligned_cols=303 Identities=21% Similarity=0.200 Sum_probs=170.2
Q ss_pred CCCccEEEeecCCCChHHHHHhhCCCCCCeeeccCCcccChhHHHhhhCCCCCcEEeccCCccccHHHHHHHhCCCCCcE
Q 016017 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135 (396)
Q Consensus 56 ~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 135 (396)
+++++.|+++++.+++..+..+.++++|++|+++++ .+....+..+.++++|++|++++|.. .......+..+++|++
T Consensus 31 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~ 108 (477)
T 2id5_A 31 PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSNRL-KLIPLGVFTGLSNLTK 108 (477)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCC-CSCCTTSSTTCTTCCE
T ss_pred CCCCcEEECCCCccceECHhHccCCCCCCEEECCCC-ccCEeChhhhhCCccCCEEECCCCcC-CccCcccccCCCCCCE
Confidence 346677777776666555556666677777777665 45555555666666677777766652 3332334556666666
Q ss_pred ecccccccccCcccccCCCCcccEEecCCCCCccccccccccCCCCccEEEeecCCCChhHHHhccCCCCCCEEEecCCC
Q 016017 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215 (396)
Q Consensus 136 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 215 (396)
|++++|......+..+..+++|+.|++++ +.+.......+..+++|++|++++|.++......+..+++|+.|+++++.
T Consensus 109 L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 187 (477)
T 2id5_A 109 LDISENKIVILLDYMFQDLYNLKSLEVGD-NDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLN 187 (477)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEEECC-TTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCC
T ss_pred EECCCCccccCChhHccccccCCEEECCC-CccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCc
Confidence 66666554433444455666666666665 33333444455566666666666666655555555566666666666665
Q ss_pred CChhhHHHHhcCCCCCEEECCCCCCChHHHHhhhcCCCCcEEEccCCcCcHHHHHHhhCCCCCCEEeccCCCCChhHhHH
Q 016017 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295 (396)
Q Consensus 216 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 295 (396)
+.......+..+++|+.|+++++......+.......+|+.|++++|.+.......+..+++|+.|++++|.+....+..
T Consensus 188 i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 267 (477)
T 2id5_A 188 INAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSM 267 (477)
T ss_dssp CCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTS
T ss_pred CcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhh
Confidence 55443444555566666666655433322222233335666666655555443344555556666666665555444444
Q ss_pred HhCCCCccEEEcCCCCCCchhHHhhcCCCCCCEEeccCcccChhhhHhhhCCCCCCEeecCCCCCc
Q 016017 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 361 (396)
Q Consensus 296 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~ 361 (396)
+..+++|+.|++++|.++...+..+..+++|++|++++|.++......+..+++|+.|++++|++.
T Consensus 268 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 268 LHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp CTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred ccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence 555555666666665555554455555556666666665555544444455555666666555544
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.98 E-value=4.2e-33 Score=265.31 Aligned_cols=132 Identities=17% Similarity=0.100 Sum_probs=100.2
Q ss_pred CceeEeccCCCCCCCchHHHHHHhcCCCccEEEeecCCCChHHHHHhhCCCCCCeeeccCCcccChhHHHhhhCCCCCcE
Q 016017 31 CALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTS 110 (396)
Q Consensus 31 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~ 110 (396)
..++.+.+.++. +..-. ......+++|++|+++++.+++..+..+.++++|++|+++++ .+....+..++++++|++
T Consensus 32 ~~l~~L~Ls~n~-l~~~~-~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~ 108 (606)
T 3vq2_A 32 SSTKNIDLSFNP-LKILK-SYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN-PIQSFSPGSFSGLTSLEN 108 (606)
T ss_dssp TTCCEEECTTSC-CCEEC-TTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCCCCTTSSTTCTTCCE
T ss_pred CCcCEEECCCCC-cCEeC-hhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC-cccccChhhcCCcccCCE
Confidence 457888888774 11111 112246889999999999998777778889999999999987 567766778899999999
Q ss_pred EeccCCccccHHHHHHHhCCCCCcEeccccccccc-CcccccCCCCcccEEecCCCC
Q 016017 111 LSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH-GGLVNLKGLMKLESLNIKWCN 166 (396)
Q Consensus 111 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~ 166 (396)
|++++|.. ....+..++.+++|++|++++|.... ..+..+.++++|+.|+++++.
T Consensus 109 L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~ 164 (606)
T 3vq2_A 109 LVAVETKL-ASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY 164 (606)
T ss_dssp EECTTSCC-CCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC
T ss_pred EEccCCcc-ccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCc
Confidence 99999874 33333457889999999999986554 346678899999999998853
No 11
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.98 E-value=3e-31 Score=251.93 Aligned_cols=364 Identities=18% Similarity=0.171 Sum_probs=243.6
Q ss_pred ceeEeccCCCC-------------CCCchHHHHHHhcCCCccEEEeecCCCChHHHHHhhC-CCC-CCeeeccCCcccCh
Q 016017 32 ALQDLCLGQYP-------------GVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKD-CSN-LQSLDFNFCIQISD 96 (396)
Q Consensus 32 ~l~~l~l~~~~-------------~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~-~~~-L~~L~l~~~~~~~~ 96 (396)
.++.+.+.+|+ ++...|...+...+++|++|+++++.+++..+..+.. +++ |++|++++|..+..
T Consensus 74 ~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~ 153 (592)
T 3ogk_B 74 NLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTT 153 (592)
T ss_dssp TCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEH
T ss_pred CCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCH
Confidence 57888886654 3345688888889999999999999998888777765 455 99999988765555
Q ss_pred hHHHhh-hCCCCCcEEeccCCccccHH---HHHHHhCCCCCcEeccccccccc----CcccccCCCCcccEEecCCCCC-
Q 016017 97 GGLEHL-RGLSNLTSLSFRRNNAITAQ---GMKAFAGLINLVKLDLERCTRIH----GGLVNLKGLMKLESLNIKWCNC- 167 (396)
Q Consensus 97 ~~~~~l-~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~~~~- 167 (396)
.....+ .++++|++|++++|...... .......+++|++|+++++.... .....+..+++|+.|++.++..
T Consensus 154 ~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~ 233 (592)
T 3ogk_B 154 DGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL 233 (592)
T ss_dssp HHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG
T ss_pred HHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH
Confidence 444333 47788888888877531110 12223344555555554433210 0011122334444444443211
Q ss_pred -----------------------------------------------ccccccccccCCCCccEEEeecCCCChhHH-Hh
Q 016017 168 -----------------------------------------------ITDSDMKPLSGLTNLKSLQISCSKVTDSGI-AY 199 (396)
Q Consensus 168 -----------------------------------------------~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~ 199 (396)
.....+..+..+++|++|++++|.++.... ..
T Consensus 234 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~ 313 (592)
T 3ogk_B 234 ELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTL 313 (592)
T ss_dssp GGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHH
T ss_pred HHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHH
Confidence 011122334456788888888888776554 33
Q ss_pred ccCCCCCCEEEecCCCCChhhHHHHhcCCCCCEEECCC-----------CCCChHHHHh-hhcCCCCcEEEccCCcCcHH
Q 016017 200 LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR-----------CQLSDDGCEK-FSKIGSLKVLNLGFNEITDE 267 (396)
Q Consensus 200 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~-----------~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~ 267 (396)
+..+++|+.|+++++-...........+++|++|++++ +.+++..... ...+++|+.|++..+.+.+.
T Consensus 314 ~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~ 393 (592)
T 3ogk_B 314 IQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNE 393 (592)
T ss_dssp HTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHH
T ss_pred HHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHH
Confidence 57788899888884322223334446788899999983 4555554433 45588999999987888776
Q ss_pred HHHHhhC-CCCCCEEecc----CCCCChh-----HhHHHhCCCCccEEEcCCCC--CCchhHHhh-cCCCCCCEEeccCc
Q 016017 268 CLVHLKG-LTNLESLNLD----SCGIGDE-----GLVNLTGLCNLKCLELSDTQ--VGSSGLRHL-SGLTNLESINLSFT 334 (396)
Q Consensus 268 ~~~~l~~-~~~L~~L~l~----~~~~~~~-----~~~~~~~~~~L~~L~l~~~~--~~~~~~~~l-~~~~~L~~L~l~~~ 334 (396)
....+.. +++|++|++. .+.+++. ....+..+++|++|+++.|. +++.....+ ..+++|++|++++|
T Consensus 394 ~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n 473 (592)
T 3ogk_B 394 SLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYV 473 (592)
T ss_dssp HHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSC
T ss_pred HHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCC
Confidence 6666654 8899999996 3455542 23335568899999997654 777766666 45899999999999
Q ss_pred ccChhhhHh-hhCCCCCCEeecCCCCCcHHHHH-HHhcCccCCeeecCCCccChHHHHHHHhc
Q 016017 335 GISDGSLRK-LAGLSSLKSLNLDARQITDTGLA-ALTSLTGLTHLDLFGARITDSGAAYLRSK 395 (396)
Q Consensus 335 ~~~~~~~~~-l~~~~~L~~L~l~~~~l~~~~~~-~l~~~~~L~~l~l~~~~l~~~~~~~l~~~ 395 (396)
.+++..... +..+++|+.|++++|.+++.... .+..+++|++|++++|++++.++..+.++
T Consensus 474 ~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~ 536 (592)
T 3ogk_B 474 GESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMA 536 (592)
T ss_dssp CSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGC
T ss_pred CCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHh
Confidence 998865544 46789999999999998876554 44678999999999999999988777654
No 12
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.98 E-value=2.3e-32 Score=252.60 Aligned_cols=322 Identities=23% Similarity=0.211 Sum_probs=270.9
Q ss_pred ccEEEeecCCCChHHHHHhhCCCCCCeeeccCCcccChhHHHhhhCCCCCcEEeccCCccccHHHHHHHhCCCCCcEecc
Q 016017 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL 138 (396)
Q Consensus 59 l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 138 (396)
.+.++.++.+++. .+..+ .+++++|+++++ .+....+..+.++++|++|++++|. +....+..+.++++|++|++
T Consensus 13 ~~~v~c~~~~l~~-ip~~~--~~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L 87 (477)
T 2id5_A 13 DRAVLCHRKRFVA-VPEGI--PTETRLLDLGKN-RIKTLNQDEFASFPHLEELELNENI-VSAVEPGAFNNLFNLRTLGL 87 (477)
T ss_dssp TTEEECCSCCCSS-CCSCC--CTTCSEEECCSS-CCCEECTTTTTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEEC
T ss_pred CCEEEeCCCCcCc-CCCCC--CCCCcEEECCCC-ccceECHhHccCCCCCCEEECCCCc-cCEeChhhhhCCccCCEEEC
Confidence 4677777777663 22222 358999999996 6777767788999999999999997 45555667889999999999
Q ss_pred cccccccCcccccCCCCcccEEecCCCCCccccccccccCCCCccEEEeecCCCChhHHHhccCCCCCCEEEecCCCCCh
Q 016017 139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218 (396)
Q Consensus 139 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 218 (396)
++|.........+..+++|+.|++++ +.+.......+..+++|++|++++|.+....+..+..+++|+.|++++|.+..
T Consensus 88 ~~n~l~~~~~~~~~~l~~L~~L~Ls~-n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 166 (477)
T 2id5_A 88 RSNRLKLIPLGVFTGLSNLTKLDISE-NKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS 166 (477)
T ss_dssp CSSCCCSCCTTSSTTCTTCCEEECTT-SCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSS
T ss_pred CCCcCCccCcccccCCCCCCEEECCC-CccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcc
Confidence 99865544444578999999999998 44555666778899999999999999988777788999999999999999888
Q ss_pred hhHHHHhcCCCCCEEECCCCCCChHHHHhhhcCCCCcEEEccCCcCcHHHHHHhhCCCCCCEEeccCCCCChhHhHHHhC
Q 016017 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298 (396)
Q Consensus 219 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 298 (396)
.....+..+++|+.|++++|.+.......+..+++|+.|+++++......+.......+|++|++++|.+.......+..
T Consensus 167 ~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 246 (477)
T 2id5_A 167 IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRH 246 (477)
T ss_dssp CCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTT
T ss_pred cChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcC
Confidence 77778899999999999999988766667888999999999987654443444445569999999999998777778899
Q ss_pred CCCccEEEcCCCCCCchhHHhhcCCCCCCEEeccCcccChhhhHhhhCCCCCCEeecCCCCCcHHHHHHHhcCccCCeee
Q 016017 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 378 (396)
Q Consensus 299 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~ 378 (396)
+++|+.|++++|.++......+..+++|++|++++|.+++..+..+..+++|+.|++++|.++...+..+..+++|+.|+
T Consensus 247 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 326 (477)
T 2id5_A 247 LVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLI 326 (477)
T ss_dssp CTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEE
T ss_pred ccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEE
Confidence 99999999999999887777788999999999999999998888889999999999999999987677788899999999
Q ss_pred cCCCccCh
Q 016017 379 LFGARITD 386 (396)
Q Consensus 379 l~~~~l~~ 386 (396)
+++|+++.
T Consensus 327 l~~N~l~c 334 (477)
T 2id5_A 327 LDSNPLAC 334 (477)
T ss_dssp CCSSCEEC
T ss_pred ccCCCccC
Confidence 99998764
No 13
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.98 E-value=1.5e-30 Score=247.26 Aligned_cols=361 Identities=20% Similarity=0.222 Sum_probs=251.7
Q ss_pred ceeEeccCCCCC-------------CCchHHHHHHhcCCCccEEEeecCCCChHHHHHhh-CCCCCCeeeccCCcccChh
Q 016017 32 ALQDLCLGQYPG-------------VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLK-DCSNLQSLDFNFCIQISDG 97 (396)
Q Consensus 32 ~l~~l~l~~~~~-------------~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~ 97 (396)
.++.+.+.+|+. ....|...+...+++|++|+++++.+++..+..+. .+++|++|++++|..++..
T Consensus 67 ~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~ 146 (594)
T 2p1m_B 67 KVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTD 146 (594)
T ss_dssp TCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHH
T ss_pred CceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHH
Confidence 577777777652 23457788888899999999999999888887776 7899999999988666665
Q ss_pred HHHhh-hCCCCCcEEeccCCccccHHHHHHH----hCCCCCcEecccccc-ccc-Ccccc-cCCCCcccEEecCCCCCcc
Q 016017 98 GLEHL-RGLSNLTSLSFRRNNAITAQGMKAF----AGLINLVKLDLERCT-RIH-GGLVN-LKGLMKLESLNIKWCNCIT 169 (396)
Q Consensus 98 ~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~~----~~~~~L~~L~l~~~~-~~~-~~~~~-l~~~~~L~~L~l~~~~~~~ 169 (396)
....+ .++++|++|++++|.. .......+ ..+++|++|++++|. ... ..... ...+++|+.|++.+|...+
T Consensus 147 ~l~~~~~~~~~L~~L~L~~~~i-~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~ 225 (594)
T 2p1m_B 147 GLAAIAATCRNLKELDLRESDV-DDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLE 225 (594)
T ss_dssp HHHHHHHHCTTCCEEECTTCEE-ECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHH
T ss_pred HHHHHHHhCCCCCEEeCcCCcc-CCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHH
Confidence 44444 4788888888888762 22111222 245566666666653 000 01111 1334555555555431110
Q ss_pred c-------------------------------------------------c----ccccccCCCCccEEEeecCCCChhH
Q 016017 170 D-------------------------------------------------S----DMKPLSGLTNLKSLQISCSKVTDSG 196 (396)
Q Consensus 170 ~-------------------------------------------------~----~~~~l~~~~~L~~L~l~~~~~~~~~ 196 (396)
+ . ....+..+++|++|++++|.+++..
T Consensus 226 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~ 305 (594)
T 2p1m_B 226 KLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYD 305 (594)
T ss_dssp HHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHH
T ss_pred HHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHH
Confidence 0 0 1111124678899999888877654
Q ss_pred HHh-ccCCCCCCEEEecCCCCChhhH-HHHhcCCCCCEEECCC---------CCCChHHHHhhh-cCCCCcEEEccCCcC
Q 016017 197 IAY-LKGLQKLTLLNLEGCPVTAACL-DSLSALGSLFYLNLNR---------CQLSDDGCEKFS-KIGSLKVLNLGFNEI 264 (396)
Q Consensus 197 ~~~-~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~---------~~~~~~~~~~l~-~~~~L~~L~l~~~~~ 264 (396)
... +..+++|+.|+++++ +..... .....+++|+.|++.+ +.+++.....+. .+++|+.|.+..+.+
T Consensus 306 l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l 384 (594)
T 2p1m_B 306 LVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQM 384 (594)
T ss_dssp HHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCC
T ss_pred HHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCc
Confidence 443 467899999999987 333222 3334589999998832 345655554454 489999998888888
Q ss_pred cHHHHHHhh-CCCCCCEEecc--C----CCCC----hhH-hHHHhCCCCccEEEcCCCCCCchhHHhhcC-CCCCCEEec
Q 016017 265 TDECLVHLK-GLTNLESLNLD--S----CGIG----DEG-LVNLTGLCNLKCLELSDTQVGSSGLRHLSG-LTNLESINL 331 (396)
Q Consensus 265 ~~~~~~~l~-~~~~L~~L~l~--~----~~~~----~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~-~~~L~~L~l 331 (396)
.+.....+. .+++|+.|++. + +.++ +.+ ...+..+++|+.|++++ .+++.....+.. +++|+.|++
T Consensus 385 ~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L 463 (594)
T 2p1m_B 385 TNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSV 463 (594)
T ss_dssp CHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEE
T ss_pred CHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeec
Confidence 776555554 68999999998 3 3454 222 22356788999999987 788877777755 899999999
Q ss_pred cCcccChhhhHhh-hCCCCCCEeecCCCCCcHHHHHHH-hcCccCCeeecCCCccChHHHHHHHhc
Q 016017 332 SFTGISDGSLRKL-AGLSSLKSLNLDARQITDTGLAAL-TSLTGLTHLDLFGARITDSGAAYLRSK 395 (396)
Q Consensus 332 ~~~~~~~~~~~~l-~~~~~L~~L~l~~~~l~~~~~~~l-~~~~~L~~l~l~~~~l~~~~~~~l~~~ 395 (396)
++|.+++..+..+ ..+++|+.|++++|.+++.+...+ ..+++|++|++++|++++.+++.+..+
T Consensus 464 ~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~ 529 (594)
T 2p1m_B 464 AFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQK 529 (594)
T ss_dssp ESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHh
Confidence 9999988777776 579999999999999987766544 468999999999999999999887543
No 14
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.98 E-value=3.3e-30 Score=237.07 Aligned_cols=322 Identities=29% Similarity=0.338 Sum_probs=192.0
Q ss_pred ceeEeccCCCCCCCchHHHHHHhcCCCccEEEeecCCCChHHHHHhhCCCCCCeeeccCCcccChhHHHhhhCCCCCcEE
Q 016017 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSL 111 (396)
Q Consensus 32 ~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L 111 (396)
.++.+.+.++.--.-. . ...+++|++|+++++.+++... +.++++|++|+++++ .+....+ +.++++|++|
T Consensus 47 ~l~~L~l~~~~i~~l~---~-~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n-~l~~~~~--~~~l~~L~~L 117 (466)
T 1o6v_A 47 QVTTLQADRLGIKSID---G-VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNN-QIADITP--LANLTNLTGL 117 (466)
T ss_dssp TCCEEECCSSCCCCCT---T-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCCGG--GTTCTTCCEE
T ss_pred cccEEecCCCCCccCc---c-hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCC-ccccChh--hcCCCCCCEE
Confidence 4667777666311111 1 2467888888888888876544 778888888888876 4444333 7788888888
Q ss_pred eccCCccccHHHHHHHhCCCCCcEecccccccccCcccccCC---------------------CCcccEEecCCCCCccc
Q 016017 112 SFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG---------------------LMKLESLNIKWCNCITD 170 (396)
Q Consensus 112 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~---------------------~~~L~~L~l~~~~~~~~ 170 (396)
++++|.... .. .+..+++|++|++++|.... ...+.. +++|+.|+++++. ++.
T Consensus 118 ~L~~n~l~~-~~--~~~~l~~L~~L~l~~n~l~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~ 191 (466)
T 1o6v_A 118 TLFNNQITD-ID--PLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK-VSD 191 (466)
T ss_dssp ECCSSCCCC-CG--GGTTCTTCSEEEEEEEEECC--CGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSC-CCC
T ss_pred ECCCCCCCC-Ch--HHcCCCCCCEEECCCCccCC--ChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCc-CCC
Confidence 888876432 22 26778888888888764332 122444 4455555555432 221
Q ss_pred cccccccCCCCccEEEeecCCCChhHHHhccCCCCCCEEEecCCCCChhhHHHHhcCCCCCEEECCCCCCChHHHHhhhc
Q 016017 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 250 (396)
Q Consensus 171 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 250 (396)
...+..+++|++|++++|.+....+ +..+++|+.|++++|.+... ..+..+++|+.|++++|.+....+ +..
T Consensus 192 --~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~ 263 (466)
T 1o6v_A 192 --ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSG 263 (466)
T ss_dssp --CGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTT
T ss_pred --ChhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhc
Confidence 1234455555555555555544322 44455566666665554432 234555666666666665544332 555
Q ss_pred CCCCcEEEccCCcCcHHHHHHhhCCCCCCEEeccCCCCChhHhHHHhCCCCccEEEcCCCCCCchhHHhhcCCCCCCEEe
Q 016017 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 330 (396)
Q Consensus 251 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 330 (396)
+++|+.|++++|.+....+ +..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+++..+ +..+++|++|+
T Consensus 264 l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~ 337 (466)
T 1o6v_A 264 LTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLF 337 (466)
T ss_dssp CTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEE
T ss_pred CCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeE
Confidence 6666666666665554322 5566666666666666654332 5566666677776666655433 45666777777
Q ss_pred ccCcccChhhhHhhhCCCCCCEeecCCCCCcHHHHHHHhcCccCCeeecCCCccCh
Q 016017 331 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386 (396)
Q Consensus 331 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~l~~ 386 (396)
+++|.+++. ..+..+++|+.|++++|++.+..+ +..+++|+.|++++|++++
T Consensus 338 l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 338 FYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred CCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 777666653 345666777777777777666543 6667777777777776654
No 15
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=5.5e-33 Score=264.43 Aligned_cols=322 Identities=14% Similarity=0.109 Sum_probs=160.3
Q ss_pred hcCCCccEEEeecCCCChH-----------------HHHHhh--CCCCCCeeeccCCcccChhHHHhhhCCCCCcEEecc
Q 016017 54 SQGSSLLSVDLSGSDVTDS-----------------GLIHLK--DCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114 (396)
Q Consensus 54 ~~~~~l~~L~l~~~~~~~~-----------------~~~~l~--~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 114 (396)
..+++|++|+++++.+++. .+..+. ++++|++|++++| .+.+..+..++++++|++|+++
T Consensus 203 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~Ls 281 (636)
T 4eco_A 203 MRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNC-PNLTKLPTFLKALPEMQLINVA 281 (636)
T ss_dssp GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECC-TTCSSCCTTTTTCSSCCEEECT
T ss_pred hcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCC-cCCccChHHHhcCCCCCEEECc
Confidence 3566677777776666653 555555 6667777777665 3444445566666677777777
Q ss_pred CCccccH-HHHHHHhCC------CCCcEecccccccccCccc--ccCCCCcccEEecCCCCCccccccccccCCCCccEE
Q 016017 115 RNNAITA-QGMKAFAGL------INLVKLDLERCTRIHGGLV--NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185 (396)
Q Consensus 115 ~~~~~~~-~~~~~~~~~------~~L~~L~l~~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L 185 (396)
+|..+.. ..+..++.+ ++|++|++++|... ..+. .+..+++|+.|+++++. +++..+ .+..+++|++|
T Consensus 282 ~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~-l~g~ip-~~~~l~~L~~L 358 (636)
T 4eco_A 282 CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQ-LEGKLP-AFGSEIKLASL 358 (636)
T ss_dssp TCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCC-CEEECC-CCEEEEEESEE
T ss_pred CCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCc-Cccchh-hhCCCCCCCEE
Confidence 6652333 444455443 66666666665443 4444 46666666666666633 332222 45555555555
Q ss_pred EeecCCCChhHHHhccCCCC-CCEEEecCCCCChhhHHHHhcC--CCCCEEECCCCCCChHHHHhhh-------cCCCCc
Q 016017 186 QISCSKVTDSGIAYLKGLQK-LTLLNLEGCPVTAACLDSLSAL--GSLFYLNLNRCQLSDDGCEKFS-------KIGSLK 255 (396)
Q Consensus 186 ~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~l~-------~~~~L~ 255 (396)
++++|.+. ..+..+..+++ |+.|++++|.+.. .+..+... ++|+.|++++|.+....+..+. .+++|+
T Consensus 359 ~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~-lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~ 436 (636)
T 4eco_A 359 NLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVS 436 (636)
T ss_dssp ECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSS-CCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEE
T ss_pred ECCCCccc-cccHhhhhhcccCcEEEccCCcCcc-cchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCC
Confidence 55555554 22333444555 5555555555442 22222222 2455555555544443333333 334455
Q ss_pred EEEccCCcCcHHHHHHhhCCCC-------------------------------CCEEeccCCCCChhHhHHHh--CCCCc
Q 016017 256 VLNLGFNEITDECLVHLKGLTN-------------------------------LESLNLDSCGIGDEGLVNLT--GLCNL 302 (396)
Q Consensus 256 ~L~l~~~~~~~~~~~~l~~~~~-------------------------------L~~L~l~~~~~~~~~~~~~~--~~~~L 302 (396)
.|++++|.+.......+..+++ |+.|++++|.+.. .+..+. .+++|
T Consensus 437 ~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~~~l~~L 515 (636)
T 4eco_A 437 SINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRATTLPYL 515 (636)
T ss_dssp EEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCB-CCGGGSTTTCTTC
T ss_pred EEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCc-cChhhhhccCCCc
Confidence 5555544444322222333444 4555555554442 222332 44555
Q ss_pred cEEEcCCCCCCchhHHhhcCCCCCCEEecc------CcccChhhhHhhhCCCCCCEeecCCCCCcHHHHHHHhcCccCCe
Q 016017 303 KCLELSDTQVGSSGLRHLSGLTNLESINLS------FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 376 (396)
Q Consensus 303 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~------~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~ 376 (396)
+.|++++|.++. .+..+..+++|++|+++ +|.+.+..+..+..+++|+.|++++|.+... +..+. ++|+.
T Consensus 516 ~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~i-p~~~~--~~L~~ 591 (636)
T 4eco_A 516 VGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKV-NEKIT--PNISV 591 (636)
T ss_dssp CEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBC-CSCCC--TTCCE
T ss_pred CEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCCcc-CHhHh--CcCCE
Confidence 555555555443 23333445555555552 2333444444444555555555555555322 22221 45555
Q ss_pred eecCCCccCh
Q 016017 377 LDLFGARITD 386 (396)
Q Consensus 377 l~l~~~~l~~ 386 (396)
|++++|++..
T Consensus 592 L~Ls~N~l~~ 601 (636)
T 4eco_A 592 LDIKDNPNIS 601 (636)
T ss_dssp EECCSCTTCE
T ss_pred EECcCCCCcc
Confidence 5555554443
No 16
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=1.2e-32 Score=260.40 Aligned_cols=349 Identities=19% Similarity=0.152 Sum_probs=240.4
Q ss_pred ceeEeccCCCCCCCchHHHHHHhcCCCccEEEeecCCCChHHHHHhhCCCCCCeeeccCCcccChhHHHhhhCCCCCcEE
Q 016017 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSL 111 (396)
Q Consensus 32 ~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L 111 (396)
.++.+++.++. +..-. ......+++|++|+++++++++..+..+.++++|++|+++++ .+....+..+.++++|++|
T Consensus 29 ~l~~L~Ls~n~-l~~~~-~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L 105 (570)
T 2z63_A 29 STKNLDLSFNP-LRHLG-SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKL 105 (570)
T ss_dssp SCCEEECCSCC-CCEEC-TTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEE
T ss_pred cccEEEccCCc-cCccC-hhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCC-cCCccCHhhhcCccccccc
Confidence 57888888774 11111 112246889999999999998776778889999999999987 5666666788999999999
Q ss_pred eccCCccccHHHHHHHhCCCCCcEeccccccccc-CcccccCCCCcccEEecCCCCCcccccccc---------------
Q 016017 112 SFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH-GGLVNLKGLMKLESLNIKWCNCITDSDMKP--------------- 175 (396)
Q Consensus 112 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~--------------- 175 (396)
++++|.. .......++.+++|++|++++|.... ..+..+.++++|++|+++++.. +...+..
T Consensus 106 ~L~~n~l-~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~~~~~L~ 183 (570)
T 2z63_A 106 VAVETNL-ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI-QSIYCTDLRVLHQMPLLNLSLD 183 (570)
T ss_dssp ECTTSCC-CCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCC-CEECGGGGHHHHTCTTCCCEEE
T ss_pred ccccccc-ccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCcc-ceecHHHccchhccchhhhhcc
Confidence 9999874 33322347889999999999986554 2456788999999999987532 2111111
Q ss_pred --------------------------------------------------------------------------------
Q 016017 176 -------------------------------------------------------------------------------- 175 (396)
Q Consensus 176 -------------------------------------------------------------------------------- 175 (396)
T Consensus 184 l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~ 263 (570)
T 2z63_A 184 LSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 263 (570)
T ss_dssp CTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEE
T ss_pred cCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhh
Confidence
Q ss_pred --------------ccCCCCccEEEeecCCCChhHHHhc-----------------------------------------
Q 016017 176 --------------LSGLTNLKSLQISCSKVTDSGIAYL----------------------------------------- 200 (396)
Q Consensus 176 --------------l~~~~~L~~L~l~~~~~~~~~~~~~----------------------------------------- 200 (396)
+..+++|++|+++++.+... +..+
T Consensus 264 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~ 342 (570)
T 2z63_A 264 LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERV-KDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS 342 (570)
T ss_dssp EEETTEEESCSTTTTGGGTTCSEEEEESCEECSC-CBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCC
T ss_pred hhcchhhhhhchhhhcCcCcccEEEecCccchhh-hhhhccCCccEEeeccCcccccCcccccccCEEeCcCCccccccc
Confidence 11223444444444333211 0011
Q ss_pred -cCCCCCCEEEecCCCCChhh--HHHHhcCCCCCEEECCCCCCChHHHHhhhcCCCCcEEEccCCcCcHHHH-HHhhCCC
Q 016017 201 -KGLQKLTLLNLEGCPVTAAC--LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL-VHLKGLT 276 (396)
Q Consensus 201 -~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~l~~~~ 276 (396)
..+++|+.|++++|.+.... +..+..+++|+.|++++|.+...... +..+++|+.|++++|.+....+ ..+..++
T Consensus 343 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 421 (570)
T 2z63_A 343 EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 421 (570)
T ss_dssp CCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCT
T ss_pred cccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCC
Confidence 22344555555554443321 34455566666666666654443322 5566777777777766554322 3466778
Q ss_pred CCCEEeccCCCCChhHhHHHhCCCCccEEEcCCCCCCc-hhHHhhcCCCCCCEEeccCcccChhhhHhhhCCCCCCEeec
Q 016017 277 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS-SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355 (396)
Q Consensus 277 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 355 (396)
+|++|++++|.+....+..+..+++|++|++++|.+++ ..+..+..+++|++|++++|.+++..+..+..+++|+.|++
T Consensus 422 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 501 (570)
T 2z63_A 422 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 501 (570)
T ss_dssp TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeC
Confidence 88888888888776666677788899999999988762 34456678899999999999988877888888999999999
Q ss_pred CCCCCcHHHHHHHhcCccCCeeecCCCccChH
Q 016017 356 DARQITDTGLAALTSLTGLTHLDLFGARITDS 387 (396)
Q Consensus 356 ~~~~l~~~~~~~l~~~~~L~~l~l~~~~l~~~ 387 (396)
++|++++..+..+.++++|+.|++++|+++..
T Consensus 502 ~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 533 (570)
T 2z63_A 502 ASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 533 (570)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCCcCCCCCHHHhhcccCCcEEEecCCcccCC
Confidence 99998887667788899999999999987753
No 17
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.97 E-value=1.4e-32 Score=252.71 Aligned_cols=324 Identities=19% Similarity=0.205 Sum_probs=248.5
Q ss_pred cEEEeecCCCChHHHHHhhCCCCCCeeeccCCcccChhHHHhhhCCCCCcEEeccCCccccHHHHHHHhCCCCCcEeccc
Q 016017 60 LSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE 139 (396)
Q Consensus 60 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 139 (396)
+.++.++.+++.. +. -.++|++|+++++ .+....+..++++++|++|++++|.......+..+..+++|++|+++
T Consensus 13 ~~~~c~~~~l~~l-p~---l~~~l~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls 87 (455)
T 3v47_A 13 YNAICINRGLHQV-PE---LPAHVNYVDLSLN-SIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD 87 (455)
T ss_dssp TEEECCSSCCSSC-CC---CCTTCCEEECCSS-CCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred cccCcCCCCcccC-CC---CCCccCEEEecCC-ccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence 4566666666532 22 2268999999997 67776678899999999999999975434445668899999999999
Q ss_pred ccccccCcccccCCCCcccEEecCCCCCccccccc--cccCCCCccEEEeecCCCChhHHHh-ccCCCCCCEEEecCCCC
Q 016017 140 RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK--PLSGLTNLKSLQISCSKVTDSGIAY-LKGLQKLTLLNLEGCPV 216 (396)
Q Consensus 140 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~ 216 (396)
+|......+..+..+++|++|+++++. +++..+. .+..+++|++|++++|.+....+.. +..+++|+.|++++|.+
T Consensus 88 ~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l 166 (455)
T 3v47_A 88 YNQFLQLETGAFNGLANLEVLTLTQCN-LDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV 166 (455)
T ss_dssp TCTTCEECTTTTTTCTTCCEEECTTSC-CBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB
T ss_pred CCccCccChhhccCcccCCEEeCCCCC-CCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcc
Confidence 987666667778999999999999954 4432233 3788999999999999988765544 78899999999999987
Q ss_pred ChhhHHHHhcC--CCCCEEECCCCCCChHHHH--------hhhcCCCCcEEEccCCcCcHHHHHHhh-------------
Q 016017 217 TAACLDSLSAL--GSLFYLNLNRCQLSDDGCE--------KFSKIGSLKVLNLGFNEITDECLVHLK------------- 273 (396)
Q Consensus 217 ~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~--------~l~~~~~L~~L~l~~~~~~~~~~~~l~------------- 273 (396)
....+..+..+ .+++.++++++.+...... .+..+++|+.|++++|.+.+..+..+.
T Consensus 167 ~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l 246 (455)
T 3v47_A 167 KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL 246 (455)
T ss_dssp SCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEEC
T ss_pred cccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEee
Confidence 76544444433 4555555555544322111 112334555555555555443333221
Q ss_pred --------------------------CCCCCCEEeccCCCCChhHhHHHhCCCCccEEEcCCCCCCchhHHhhcCCCCCC
Q 016017 274 --------------------------GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 327 (396)
Q Consensus 274 --------------------------~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 327 (396)
..++|+.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 326 (455)
T 3v47_A 247 SNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLL 326 (455)
T ss_dssp TTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred ccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCC
Confidence 126899999999998877777888999999999999999988777888999999
Q ss_pred EEeccCcccChhhhHhhhCCCCCCEeecCCCCCcHHHHHHHhcCccCCeeecCCCccChHHH
Q 016017 328 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 389 (396)
Q Consensus 328 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~l~~~~~ 389 (396)
+|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|++++.+.
T Consensus 327 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 388 (455)
T 3v47_A 327 KLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPD 388 (455)
T ss_dssp EEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred EEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCH
Confidence 99999999988878888999999999999999998877889999999999999999987554
No 18
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=1.8e-29 Score=223.54 Aligned_cols=302 Identities=25% Similarity=0.340 Sum_probs=247.7
Q ss_pred ceeEeccCCCCCCCchHHHHHHhcCCCccEEEeecCCCChHHHHHhhCCCCCCeeeccCCcccChhHHHhhhCCCCCcEE
Q 016017 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSL 111 (396)
Q Consensus 32 ~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L 111 (396)
.++.+.+.++.-..-.. ...++++++|+++++.+++... +..+++|++|+++++ .+... ..+..+++|++|
T Consensus 45 ~L~~L~l~~~~i~~~~~----~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n-~i~~~--~~~~~l~~L~~L 115 (347)
T 4fmz_A 45 SITKLVVAGEKVASIQG----IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTN-KITDI--SALQNLTNLREL 115 (347)
T ss_dssp TCSEEECCSSCCCCCTT----GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCC--GGGTTCTTCSEE
T ss_pred cccEEEEeCCccccchh----hhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCC-cccCc--hHHcCCCcCCEE
Confidence 58888888875222121 3568999999999999986544 889999999999997 55553 468899999999
Q ss_pred eccCCccccHHHHHHHhCCCCCcEecccccccccCcccccCCCCcccEEecCCCCCccccccccccCCCCccEEEeecCC
Q 016017 112 SFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 191 (396)
Q Consensus 112 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 191 (396)
++++|.... .. .+..+++|++|++++|..... ...+..+++|+.|++.++.. ... ..+..+++|++|++++|.
T Consensus 116 ~l~~n~i~~-~~--~~~~l~~L~~L~l~~n~~~~~-~~~~~~l~~L~~L~l~~~~~-~~~--~~~~~l~~L~~L~l~~n~ 188 (347)
T 4fmz_A 116 YLNEDNISD-IS--PLANLTKMYSLNLGANHNLSD-LSPLSNMTGLNYLTVTESKV-KDV--TPIANLTDLYSLSLNYNQ 188 (347)
T ss_dssp ECTTSCCCC-CG--GGTTCTTCCEEECTTCTTCCC-CGGGTTCTTCCEEECCSSCC-CCC--GGGGGCTTCSEEECTTSC
T ss_pred ECcCCcccC-ch--hhccCCceeEEECCCCCCccc-ccchhhCCCCcEEEecCCCc-CCc--hhhccCCCCCEEEccCCc
Confidence 999997533 22 278999999999999865544 34488999999999998553 322 227789999999999998
Q ss_pred CChhHHHhccCCCCCCEEEecCCCCChhhHHHHhcCCCCCEEECCCCCCChHHHHhhhcCCCCcEEEccCCcCcHHHHHH
Q 016017 192 VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 271 (396)
Q Consensus 192 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 271 (396)
+..... +..+++|+.++++++.+....+ +..+++|+.|++++|.+....+ +..+++|+.|++++|.+... ..
T Consensus 189 l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~ 260 (347)
T 4fmz_A 189 IEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NA 260 (347)
T ss_dssp CCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GG
T ss_pred cccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hh
Confidence 886543 7889999999999998876433 7889999999999998876554 78899999999999988764 35
Q ss_pred hhCCCCCCEEeccCCCCChhHhHHHhCCCCccEEEcCCCCCCchhHHhhcCCCCCCEEeccCcccChhhhHhhhCCCCCC
Q 016017 272 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 351 (396)
Q Consensus 272 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 351 (396)
+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+++..+ +..+++|+
T Consensus 261 ~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 336 (347)
T 4fmz_A 261 VKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMD 336 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCS
T ss_pred HhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccc
Confidence 78899999999999988764 357789999999999999999888999999999999999999988655 78899999
Q ss_pred EeecCCCCCc
Q 016017 352 SLNLDARQIT 361 (396)
Q Consensus 352 ~L~l~~~~l~ 361 (396)
.|++++|.++
T Consensus 337 ~L~l~~N~i~ 346 (347)
T 4fmz_A 337 SADFANQVIK 346 (347)
T ss_dssp EESSSCC---
T ss_pred eeehhhhccc
Confidence 9999999876
No 19
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=2.4e-31 Score=239.21 Aligned_cols=319 Identities=17% Similarity=0.111 Sum_probs=262.3
Q ss_pred cCCCccEEEeecCCCChHHHHHhhCCCCCCeeeccCCcccChhHHHhhhCCCCCcEEeccCCccccHHHHHHHhCCCCCc
Q 016017 55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134 (396)
Q Consensus 55 ~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 134 (396)
..++++.++++++.++......+..+++|++|+++++ .+....+..+..+++|++|++++|. +....+..++.+++|+
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLT 120 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCC
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCC-cccccChhhccCCCCcCEEECCCCC-CCcCCHHHhcCCCCCC
Confidence 4589999999999888766677889999999999987 5777666788999999999999997 4455556688999999
Q ss_pred EecccccccccCcccccCCCCcccEEecCCCCCccccccccccCCCCccEEEeecCCCChhHHHhccCCCCCCEEEecCC
Q 016017 135 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 214 (396)
Q Consensus 135 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 214 (396)
+|++++|.........+..+++|++|+++++ .++...+..+..+++|++|++++|.++.. .+..+++|+.++++++
T Consensus 121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n 196 (390)
T 3o6n_A 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYN 196 (390)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSS
T ss_pred EEECCCCccCcCCHHHhcCCCCCcEEECCCC-ccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccc
Confidence 9999998655333334688999999999984 45556667788999999999999988865 3567889999999998
Q ss_pred CCChhhHHHHhcCCCCCEEECCCCCCChHHHHhhhcCCCCcEEEccCCcCcHHHHHHhhCCCCCCEEeccCCCCChhHhH
Q 016017 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294 (396)
Q Consensus 215 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 294 (396)
.+... ...++|+.|++++|.+..... ...++|+.|++++|.+.+. ..+..+++|++|++++|.+.+..+.
T Consensus 197 ~l~~~-----~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~ 266 (390)
T 3o6n_A 197 LLSTL-----AIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYH 266 (390)
T ss_dssp CCSEE-----ECCSSCSEEECCSSCCCEEEC---CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESG
T ss_pred ccccc-----CCCCcceEEECCCCeeeeccc---cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChh
Confidence 77652 345789999999998765422 3357899999999988764 4678899999999999999887778
Q ss_pred HHhCCCCccEEEcCCCCCCchhHHhhcCCCCCCEEeccCcccChhhhHhhhCCCCCCEeecCCCCCcHHHHHHHhcCccC
Q 016017 295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 374 (396)
Q Consensus 295 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L 374 (396)
.+..+++|++|++++|.++... ..+..+++|++|++++|.++. .+..+..+++|+.|++++|.++... +..+++|
T Consensus 267 ~~~~l~~L~~L~L~~n~l~~~~-~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~N~i~~~~---~~~~~~L 341 (390)
T 3o6n_A 267 PFVKMQRLERLYISNNRLVALN-LYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVTLK---LSTHHTL 341 (390)
T ss_dssp GGTTCSSCCEEECCSSCCCEEE-CSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCC
T ss_pred HccccccCCEEECCCCcCcccC-cccCCCCCCCEEECCCCccee-cCccccccCcCCEEECCCCccceeC---chhhccC
Confidence 8889999999999999987642 233578999999999998886 4555678899999999999998752 6778999
Q ss_pred CeeecCCCccChHHHHHHHh
Q 016017 375 THLDLFGARITDSGAAYLRS 394 (396)
Q Consensus 375 ~~l~l~~~~l~~~~~~~l~~ 394 (396)
++|++++|+++.+....+.+
T Consensus 342 ~~L~l~~N~~~~~~~~~~~~ 361 (390)
T 3o6n_A 342 KNLTLSHNDWDCNSLRALFR 361 (390)
T ss_dssp SEEECCSSCEEHHHHHHHTT
T ss_pred CEEEcCCCCccchhHHHHHH
Confidence 99999999999988876644
No 20
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.97 E-value=1.2e-32 Score=262.19 Aligned_cols=344 Identities=21% Similarity=0.176 Sum_probs=183.3
Q ss_pred ceeEeccCCCCCCCchHHHHHHhcCCCccEEEeecCCCChHHHHHhhCCCCCCeeeccCCcccChhHHHhhhCCCCCcEE
Q 016017 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSL 111 (396)
Q Consensus 32 ~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L 111 (396)
.++.+++.++. +..-. ......+++|++|+++++.+++..+..++++++|++|+++++ .+....+..++++++|++|
T Consensus 57 ~L~~L~Ls~n~-l~~i~-~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L 133 (606)
T 3vq2_A 57 ELQWLDLSRCE-IETIE-DKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVET-KLASLESFPIGQLITLKKL 133 (606)
T ss_dssp TCCEEECTTCC-CCEEC-TTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTS-CCCCSSSSCCTTCTTCCEE
T ss_pred cCcEEeCCCCc-ccccC-HHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCC-ccccccccccCCCCCCCEE
Confidence 57777777763 21110 111245678888888887777666677777778888888776 4444443446667777777
Q ss_pred eccCCccccHHHHHHHhCCCCCcEecccccccccCccc------------------------------------------
Q 016017 112 SFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLV------------------------------------------ 149 (396)
Q Consensus 112 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~------------------------------------------ 149 (396)
++++|.......+..++++++|++|++++|......+.
T Consensus 134 ~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~ 213 (606)
T 3vq2_A 134 NVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRG 213 (606)
T ss_dssp ECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEES
T ss_pred eCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccC
Confidence 77776543222344566677777776666532211111
Q ss_pred --------------------------------------------------------------------------------
Q 016017 150 -------------------------------------------------------------------------------- 149 (396)
Q Consensus 150 -------------------------------------------------------------------------------- 149 (396)
T Consensus 214 n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~ 293 (606)
T 3vq2_A 214 NFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLA 293 (606)
T ss_dssp CCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEE
T ss_pred CccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEec
Confidence
Q ss_pred --------ccCCCCcccEEecCCCCCccccccccccCCCCccEEEeecCCCChhHHHhccCCCCCCEEEecCCCCChh--
Q 016017 150 --------NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA-- 219 (396)
Q Consensus 150 --------~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-- 219 (396)
.+..+++|+.|++.++.. +. .+ .+ .+++|++|++++|...... .+..+++|+.|++++|.+...
T Consensus 294 ~~~~~~l~~l~~~~~L~~L~l~~n~l-~~-lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~ 367 (606)
T 3vq2_A 294 GVSIKYLEDVPKHFKWQSLSIIRCQL-KQ-FP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGC 367 (606)
T ss_dssp SCCCCCCCCCCTTCCCSEEEEESCCC-SS-CC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEE
T ss_pred CccchhhhhccccccCCEEEcccccC-cc-cc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcc
Confidence 011122333333333221 11 11 12 3445555555555222211 334555566666655554432
Q ss_pred hHHHHhcCCCCCEEECCCCC-----------------------CChHHH-HhhhcCCCCcEEEccCCcCcHHHHHHhhCC
Q 016017 220 CLDSLSALGSLFYLNLNRCQ-----------------------LSDDGC-EKFSKIGSLKVLNLGFNEITDECLVHLKGL 275 (396)
Q Consensus 220 ~~~~~~~~~~L~~L~l~~~~-----------------------~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~ 275 (396)
.+..+..+++|+.|++++|. +....+ ..+..+++|+.|++++|.+....+..+..+
T Consensus 368 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 447 (606)
T 3vq2_A 368 CSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGL 447 (606)
T ss_dssp CCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTC
T ss_pred hhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCC
Confidence 13344445555555555544 333222 234445555555555555544434445555
Q ss_pred CCCCEEeccCCCCChh-HhHHHhCCCCccEEEcCCCCCCchhHHhhcCCCCCCEEeccCcccChhhhHhhhCCCCCCEee
Q 016017 276 TNLESLNLDSCGIGDE-GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 354 (396)
Q Consensus 276 ~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 354 (396)
++|++|++++|.+.+. .+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|+
T Consensus 448 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 527 (606)
T 3vq2_A 448 TSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLD 527 (606)
T ss_dssp TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEE
T ss_pred CCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEE
Confidence 6666666666555442 344455556666666666666555555556666666666666666665556666666666666
Q ss_pred cCCCCCcHHHHHHHhcCc-cCCeeecCCCccC
Q 016017 355 LDARQITDTGLAALTSLT-GLTHLDLFGARIT 385 (396)
Q Consensus 355 l~~~~l~~~~~~~l~~~~-~L~~l~l~~~~l~ 385 (396)
+++|+++.. +..+..++ +|+++++++|++.
T Consensus 528 l~~N~l~~~-p~~~~~l~~~L~~l~l~~N~~~ 558 (606)
T 3vq2_A 528 CSFNRIETS-KGILQHFPKSLAFFNLTNNSVA 558 (606)
T ss_dssp CTTSCCCCE-ESCGGGSCTTCCEEECCSCCCC
T ss_pred CCCCcCccc-CHhHhhhcccCcEEEccCCCcc
Confidence 666666643 22355554 4666666666554
No 21
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=2e-31 Score=249.12 Aligned_cols=345 Identities=17% Similarity=0.146 Sum_probs=232.7
Q ss_pred CceeEeccCCCCCCCchHHHHHHhcCCCccEEEeecCCCChHHHHHhhCCCCCCeeeccCCcccChhHHHhhhCCCCCcE
Q 016017 31 CALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTS 110 (396)
Q Consensus 31 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~ 110 (396)
..++.+++.++. +...... ....+++|++|+++++++++..+..+.++++|++|+++++ .+... +.. .+++|++
T Consensus 21 ~~L~~L~Ls~n~-i~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l-p~~--~l~~L~~ 94 (520)
T 2z7x_B 21 QKTTILNISQNY-ISELWTS-DILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN-KLVKI-SCH--PTVNLKH 94 (520)
T ss_dssp TTCSEEECCSSC-CCCCCHH-HHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS-CCCEE-ECC--CCCCCSE
T ss_pred ccccEEECCCCc-ccccChh-hccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC-ceeec-Ccc--ccCCccE
Confidence 568888888874 2221111 2346788999999999888777788888999999999886 45532 222 7888999
Q ss_pred EeccCCccccHHHHHHHhCCCCCcEecccccccccCcccccCCCCcc--cEEecCCCCCc-cccccccc-----------
Q 016017 111 LSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL--ESLNIKWCNCI-TDSDMKPL----------- 176 (396)
Q Consensus 111 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L--~~L~l~~~~~~-~~~~~~~l----------- 176 (396)
|++++|.......+..++.+++|++|++++|.... ..+..+++| +.|++.++... ....+..+
T Consensus 95 L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~ 171 (520)
T 2z7x_B 95 LDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIV 171 (520)
T ss_dssp EECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEE
T ss_pred EeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEE
Confidence 99998875332334678888999999998876443 335556666 88888875430 11111111
Q ss_pred ---------------------------------------------cCCCC---------------------------ccE
Q 016017 177 ---------------------------------------------SGLTN---------------------------LKS 184 (396)
Q Consensus 177 ---------------------------------------------~~~~~---------------------------L~~ 184 (396)
..+++ |++
T Consensus 172 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~ 251 (520)
T 2z7x_B 172 FPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWY 251 (520)
T ss_dssp CCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSE
T ss_pred eccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccE
Confidence 12222 333
Q ss_pred EEeecCCCChhHHHhc-----cCCCCCCEEEecCCCCCh--hhHHH----------------------HhcCCCCCEEEC
Q 016017 185 LQISCSKVTDSGIAYL-----KGLQKLTLLNLEGCPVTA--ACLDS----------------------LSALGSLFYLNL 235 (396)
Q Consensus 185 L~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~--~~~~~----------------------~~~~~~L~~L~l 235 (396)
|++++|.+.+..+..+ ..+++|+.++++++.+.. ..... ...+++|++|++
T Consensus 252 L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L 331 (520)
T 2z7x_B 252 FSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDF 331 (520)
T ss_dssp EEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEEC
T ss_pred EEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEe
Confidence 3333333222112222 223333333333332200 00001 146788899999
Q ss_pred CCCCCChHHHHhhhcCCCCcEEEccCCcCcH--HHHHHhhCCCCCCEEeccCCCCCh-hHhHHHhCCCCccEEEcCCCCC
Q 016017 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITD--ECLVHLKGLTNLESLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQV 312 (396)
Q Consensus 236 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~ 312 (396)
++|.+.+..+..+..+++|+.|++++|.+.. ..+..+..+++|++|++++|.+.+ .....+..+++|++|++++|.+
T Consensus 332 s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l 411 (520)
T 2z7x_B 332 SNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNIL 411 (520)
T ss_dssp CSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCC
T ss_pred ECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCC
Confidence 9988877666777888999999999988875 345668888999999999998876 3333466778999999999988
Q ss_pred CchhHHhhcCCCCCCEEeccCcccChhhhHhhhCCCCCCEeecCCCCCcHHHHHHHhcCccCCeeecCCCccChH
Q 016017 313 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 387 (396)
Q Consensus 313 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~l~~~ 387 (396)
++..+..+. ++|++|++++|.++. .+..+..+++|+.|++++|+++......+..+++|++|++++|+++.+
T Consensus 412 ~~~~~~~l~--~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~ 483 (520)
T 2z7x_B 412 TDTIFRCLP--PRIKVLDLHSNKIKS-IPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 483 (520)
T ss_dssp CGGGGGSCC--TTCCEEECCSSCCCC-CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred Ccchhhhhc--ccCCEEECCCCcccc-cchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCccc
Confidence 765444332 799999999998884 566667899999999999999865444588899999999999998764
No 22
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=5.1e-31 Score=248.10 Aligned_cols=181 Identities=23% Similarity=0.255 Sum_probs=90.4
Q ss_pred CCccEEEeecCCCChHHHHHhhCCCCCCeeeccCCcccChhHHHhhhCCCCCcEEeccCCccccHHHHHHHhCCCCCcEe
Q 016017 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136 (396)
Q Consensus 57 ~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 136 (396)
+++++|+++++.+++..+..+.++++|++|+++++ .+....+..++++++|++|++++|. +....+..++.+++|++|
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L 103 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS-RINTIEGDAFYSLGSLEHLDLSDNH-LSSLSSSWFGPLSSLKYL 103 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSC-CCSCCHHHHTTCTTCCEE
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCC-CcCccChhhccccccCCEEECCCCc-cCccCHHHhccCCCCcEE
Confidence 45556666655555444445555556666666554 3444444445555556666665554 233334445555566666
Q ss_pred ccccccccc-CcccccCCCCcccEEecCCCCCccccccccccCCCCccEEEeecCCCChhHHHhccCCCCCCEEEecCCC
Q 016017 137 DLERCTRIH-GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215 (396)
Q Consensus 137 ~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 215 (396)
++++|.... ..+..+..+++|++|+++++...+......+..+++|++|++++|.+....+..+..+++|+.|+++++.
T Consensus 104 ~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 183 (549)
T 2z81_A 104 NLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE 183 (549)
T ss_dssp ECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSB
T ss_pred ECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCc
Confidence 665554332 1223355555555555555433333333445555555555555555554444444555555555555544
Q ss_pred CChhhHHHHhcCCCCCEEECCCCC
Q 016017 216 VTAACLDSLSALGSLFYLNLNRCQ 239 (396)
Q Consensus 216 ~~~~~~~~~~~~~~L~~L~l~~~~ 239 (396)
........+..+++|+.|++++|.
T Consensus 184 ~~~~~~~~~~~l~~L~~L~L~~n~ 207 (549)
T 2z81_A 184 SAFLLEIFADILSSVRYLELRDTN 207 (549)
T ss_dssp STTHHHHHHHSTTTBSEEEEESCB
T ss_pred ccccchhhHhhcccccEEEccCCc
Confidence 433222222334555555554443
No 23
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=3.3e-31 Score=249.39 Aligned_cols=351 Identities=18% Similarity=0.136 Sum_probs=218.2
Q ss_pred CceeEeccCCCCCCCchHHHHHHhcCCCccEEEeecCCCChHHHHHhhCCCCCCeeeccCCcccChhHHHhhhCCCCCcE
Q 016017 31 CALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTS 110 (396)
Q Consensus 31 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~ 110 (396)
..++.+++.++. +...... ....+++|++|+++++.+++..+..+.++++|++|+++++ .+....+..++++++|++
T Consensus 26 ~~L~~L~Ls~n~-l~~~~~~-~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~ 102 (549)
T 2z81_A 26 AAMKSLDLSFNK-ITYIGHG-DLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN-HLSSLSSSWFGPLSSLKY 102 (549)
T ss_dssp TTCCEEECCSSC-CCEECSS-TTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCSCCHHHHTTCTTCCE
T ss_pred CCccEEECcCCc-cCccChh-hhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCC-ccCccCHHHhccCCCCcE
Confidence 367888888774 2211111 1246788888988888888766677888888888888886 566666667888888888
Q ss_pred EeccCCccccHHHHHHHhCCCCCcEecccccccccCcc-cccCCCCcccEEecCCCCCccccccccccC-----------
Q 016017 111 LSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGL-VNLKGLMKLESLNIKWCNCITDSDMKPLSG----------- 178 (396)
Q Consensus 111 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~----------- 178 (396)
|++++|.......+..++.+++|++|++++|......+ ..+..+++|+.|+++++. +++..+..+..
T Consensus 103 L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~l~~ 181 (549)
T 2z81_A 103 LNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALS-LRNYQSQSLKSIRDIHHLTLHL 181 (549)
T ss_dssp EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT-CCEECTTTTTTCSEEEEEEEEC
T ss_pred EECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCc-ccccChhhhhccccCceEeccc
Confidence 88888874322223456778888888888876443333 357777888888887643 33333333433
Q ss_pred -------------CCCccEEEeecCCCChhH---------------------------H----HhccCC-----------
Q 016017 179 -------------LTNLKSLQISCSKVTDSG---------------------------I----AYLKGL----------- 203 (396)
Q Consensus 179 -------------~~~L~~L~l~~~~~~~~~---------------------------~----~~~~~~----------- 203 (396)
+++|++|++++|.+.... + ..+..+
T Consensus 182 n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~ 261 (549)
T 2z81_A 182 SESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDC 261 (549)
T ss_dssp SBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESC
T ss_pred CcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccc
Confidence 455556665555443310 0 000001
Q ss_pred ------------------------------------------------CCCCEEEecCCCCChhhHHHHhcCCCCCEEEC
Q 016017 204 ------------------------------------------------QKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235 (396)
Q Consensus 204 ------------------------------------------------~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 235 (396)
++|+.++++++.+.......+..+++|+.|++
T Consensus 262 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~L 341 (549)
T 2z81_A 262 TLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDL 341 (549)
T ss_dssp EEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEEC
T ss_pred cccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEc
Confidence 12333333333322211122245677777777
Q ss_pred CCCCCChHHHH---hhhcCCCCcEEEccCCcCcHHHH--HHhhCCCCCCEEeccCCCCChhHhHHHhCCCCccEEEcCCC
Q 016017 236 NRCQLSDDGCE---KFSKIGSLKVLNLGFNEITDECL--VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 310 (396)
Q Consensus 236 ~~~~~~~~~~~---~l~~~~~L~~L~l~~~~~~~~~~--~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 310 (396)
++|.+.+..+. .+..+++|+.|++++|.+..... ..+..+++|++|++++|.+.. .+..+..+++|++|++++|
T Consensus 342 s~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~~~~L~~L~Ls~N 420 (549)
T 2z81_A 342 SENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP-MPDSCQWPEKMRFLNLSST 420 (549)
T ss_dssp CSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCC-CCSCCCCCTTCCEEECTTS
T ss_pred cCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCcc-CChhhcccccccEEECCCC
Confidence 77776655432 24566777777777777655422 346677777777777776653 2333444556666666666
Q ss_pred CCCchhHH-----------------hhcCCCCCCEEeccCcccChhhhHhhhCCCCCCEeecCCCCCcHHHHHHHhcCcc
Q 016017 311 QVGSSGLR-----------------HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 373 (396)
Q Consensus 311 ~~~~~~~~-----------------~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~ 373 (396)
.++..... ....+++|++|++++|.++. ++. ...+++|+.|++++|++++..+..+..+++
T Consensus 421 ~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~-ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 498 (549)
T 2z81_A 421 GIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKT-LPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTS 498 (549)
T ss_dssp CCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSS-CCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTT
T ss_pred CcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccCc-CCC-cccCccCCEEecCCCccCCcCHHHHhcCcc
Confidence 55321110 01256788888888887764 232 356788999999988888776677888899
Q ss_pred CCeeecCCCccChHH
Q 016017 374 LTHLDLFGARITDSG 388 (396)
Q Consensus 374 L~~l~l~~~~l~~~~ 388 (396)
|+.|++++|+++..-
T Consensus 499 L~~L~l~~N~~~~~~ 513 (549)
T 2z81_A 499 LQKIWLHTNPWDCSC 513 (549)
T ss_dssp CCEEECCSSCBCCCH
T ss_pred cCEEEecCCCccCCC
Confidence 999999999876544
No 24
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.97 E-value=1.4e-31 Score=258.22 Aligned_cols=328 Identities=23% Similarity=0.221 Sum_probs=176.5
Q ss_pred CccEEEeecCCCChHHHHHhhCCCCCCeeeccCCcccChhHHHhhhCCCCCcEEeccCCccccHH--------HHHHHhC
Q 016017 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQ--------GMKAFAG 129 (396)
Q Consensus 58 ~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~--------~~~~~~~ 129 (396)
+|+.|+++++.+++..+..+..+++|++|+++++ .+....+..+..+++|++|+++++...... ....+..
T Consensus 249 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~ 327 (680)
T 1ziw_A 249 NLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYN-NIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQW 327 (680)
T ss_dssp CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSC-CBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTT
T ss_pred CCCEEECCCCCcCccCcccccCcccccEeeCCCC-ccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhccc
Confidence 4666666666665544455556666666666654 344444445555566666666543211000 0013345
Q ss_pred CCCCcEecccccccccCcccccCCCCcccEEecCCCC---------------------------CccccccccccCCCCc
Q 016017 130 LINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCN---------------------------CITDSDMKPLSGLTNL 182 (396)
Q Consensus 130 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~---------------------------~~~~~~~~~l~~~~~L 182 (396)
+++|++|++++|......+..+..+++|+.|+++++. .++...+..+..+++|
T Consensus 328 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L 407 (680)
T 1ziw_A 328 LKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHL 407 (680)
T ss_dssp CTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred CCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCC
Confidence 5666666666654443333345555666666655432 1222223334444555
Q ss_pred cEEEeecCCCChhH-HHhccCCCCCCEEEecCCCCChhhHHHHhcCCCCCEEECCCCCCC--hHHHHhhhcCCCCcEEEc
Q 016017 183 KSLQISCSKVTDSG-IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS--DDGCEKFSKIGSLKVLNL 259 (396)
Q Consensus 183 ~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~l~~~~~L~~L~l 259 (396)
++|++++|.+.... ...+..+++|+.|++++|.+....+..+..+++|+.|++.++.+. +..+..+..+++|+.|++
T Consensus 408 ~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~L 487 (680)
T 1ziw_A 408 EVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDL 487 (680)
T ss_dssp CEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEEC
T ss_pred CEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEEC
Confidence 55555555443221 133444555555555555444333334445555555555555433 122344555666666666
Q ss_pred cCCcCcHHHHHHhhCCCCCCEEeccCCCCChhHh--------HHHhCCCCccEEEcCCCCCCchhHHhhcCCCCCCEEec
Q 016017 260 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL--------VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 331 (396)
Q Consensus 260 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~--------~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 331 (396)
++|.+....+..+.++++|+.|++++|.+..... ..+..+++|+.|++++|.++......+..+++|++|++
T Consensus 488 s~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L 567 (680)
T 1ziw_A 488 SNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDL 567 (680)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeEC
Confidence 6666655444445666666666666666543211 12455666677777766666544445566677777777
Q ss_pred cCcccChhhhHhhhCCCCCCEeecCCCCCcHHHHHHHh-cCccCCeeecCCCccCh
Q 016017 332 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT-SLTGLTHLDLFGARITD 386 (396)
Q Consensus 332 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~-~~~~L~~l~l~~~~l~~ 386 (396)
++|.++...+..+..+++|+.|++++|+++...+..+. .+++|+.+++++|++..
T Consensus 568 s~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c 623 (680)
T 1ziw_A 568 GLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDC 623 (680)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCB
T ss_pred CCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCccc
Confidence 77766655445555667777777777766665555555 56667777777665543
No 25
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.97 E-value=6.9e-32 Score=265.23 Aligned_cols=306 Identities=21% Similarity=0.164 Sum_probs=192.6
Q ss_pred cCCCccEEEeecCCCChHHHHHhhCCCCCCeeeccCCcccChhHHHhhhCCCCCcEEeccCCccccHHHHHHHhCCCCCc
Q 016017 55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134 (396)
Q Consensus 55 ~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 134 (396)
.++++++|+++++.++...+..+.++++|++|+++++.......+..++++++|++|++++|.. ....+..+..+++|+
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l-~~~~p~~~~~l~~L~ 100 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKI-YFLHPDAFQGLFHLF 100 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCC-CEECTTSSCSCSSCC
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcC-cccCHhHccCCcccC
Confidence 4578899999988888776777888899999999887444444466788888999999988874 444466788888999
Q ss_pred EecccccccccCcccc--cCCCCcccEEecCCCCCccccccccccCCCCccEEEeecCCCChhHHHhccCC--CCCCEEE
Q 016017 135 KLDLERCTRIHGGLVN--LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGL--QKLTLLN 210 (396)
Q Consensus 135 ~L~l~~~~~~~~~~~~--l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~--~~L~~L~ 210 (396)
+|++++|......+.. +..+++|+.|+++++...+......+.++++|++|++++|.+....+..+..+ ++|+.|+
T Consensus 101 ~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~ 180 (844)
T 3j0a_A 101 ELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFS 180 (844)
T ss_dssp CEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCE
T ss_pred EeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEE
Confidence 9999887655433433 78888999999988554333333567888899999998887765444444433 5666677
Q ss_pred ecCCCCChhhHHHHhcCCC------CCEEECCCCCCChHHHHhh------------------------------------
Q 016017 211 LEGCPVTAACLDSLSALGS------LFYLNLNRCQLSDDGCEKF------------------------------------ 248 (396)
Q Consensus 211 l~~~~~~~~~~~~~~~~~~------L~~L~l~~~~~~~~~~~~l------------------------------------ 248 (396)
+++|.+....+..+..+++ |+.|++++|.+....+..+
T Consensus 181 L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f 260 (844)
T 3j0a_A 181 LAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTF 260 (844)
T ss_dssp ECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTT
T ss_pred CCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhh
Confidence 7666554433322333322 6666666664332221111
Q ss_pred hc--CCCCcEEEccCCcCcHHHHHHhhCCCCCCEEeccCCCCChhHhHHHhCCCCccEEEcCCCCCCchhHHhhcCCCCC
Q 016017 249 SK--IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 326 (396)
Q Consensus 249 ~~--~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 326 (396)
.. .++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|++|++++|.++...+..+..+++|
T Consensus 261 ~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 340 (844)
T 3j0a_A 261 AGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKV 340 (844)
T ss_dssp TTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTC
T ss_pred hccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCC
Confidence 11 1355666665555544333445555666666666665555444455555666666666665554444445555666
Q ss_pred CEEeccCcccChhhhHhhhCCCCCCEeecCCCCCc
Q 016017 327 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 361 (396)
Q Consensus 327 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~ 361 (396)
++|++++|.+....+..+..+++|+.|++++|.++
T Consensus 341 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~ 375 (844)
T 3j0a_A 341 AYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT 375 (844)
T ss_dssp CEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSC
T ss_pred CEEECCCCCCCccChhhhcCCCCCCEEECCCCCCC
Confidence 66666666555544444555566666666655554
No 26
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=1.2e-31 Score=255.31 Aligned_cols=342 Identities=13% Similarity=0.091 Sum_probs=238.8
Q ss_pred ceeEeccCCCCCCCc-----hH-----------HHHHHh--cCCCccEEEeecCCCChHHHHHhhCCCCCCeeeccCCcc
Q 016017 32 ALQDLCLGQYPGVND-----KW-----------MDVIAS--QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQ 93 (396)
Q Consensus 32 ~l~~l~l~~~~~~~~-----~~-----------~~~~~~--~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 93 (396)
.++.+.+.++. +.. .| ...... .+++|++|+++++.+.+..+..+.++++|++|+++++..
T Consensus 207 ~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~ 285 (636)
T 4eco_A 207 KLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRG 285 (636)
T ss_dssp TCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTT
T ss_pred CCCEEECcCCc-cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCC
Confidence 68888888875 322 11 111122 688999999999998888888899999999999999743
Q ss_pred cCh-hHHHhhhCC------CCCcEEeccCCccccHHHHH--HHhCCCCCcEecccccccccCcccccCCCCcccEEecCC
Q 016017 94 ISD-GGLEHLRGL------SNLTSLSFRRNNAITAQGMK--AFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW 164 (396)
Q Consensus 94 ~~~-~~~~~l~~~------~~L~~L~l~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 164 (396)
+.. ..+..++.+ ++|++|++++|... ..+. .++.+++|++|++++|......+ .+..+++|+.|++++
T Consensus 286 l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~--~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~ 362 (636)
T 4eco_A 286 ISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK--TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAY 362 (636)
T ss_dssp SCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS--SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCS
T ss_pred CccccchHHHHhhhccccCCCCCEEECCCCcCC--ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCC
Confidence 666 666666665 89999999998753 3344 78889999999998876542333 444445555555544
Q ss_pred CC-----------------------CccccccccccCC--CCccEEEeecCCCChhHHHhcc-------CCCCCCEEEec
Q 016017 165 CN-----------------------CITDSDMKPLSGL--TNLKSLQISCSKVTDSGIAYLK-------GLQKLTLLNLE 212 (396)
Q Consensus 165 ~~-----------------------~~~~~~~~~l~~~--~~L~~L~l~~~~~~~~~~~~~~-------~~~~L~~L~l~ 212 (396)
+. .++ ..+..+... ++|++|++++|.+....+..+. .+++|+.|+++
T Consensus 363 N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls 441 (636)
T 4eco_A 363 NQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLS 441 (636)
T ss_dssp SEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECC
T ss_pred CccccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECc
Confidence 22 122 122233322 2566666666666555444455 56688888888
Q ss_pred CCCCChhhHHHHhcCCCCCEEECCCCCCChHHHHhhhcC-------CCCcEEEccCCcCcHHHHHHhh--CCCCCCEEec
Q 016017 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI-------GSLKVLNLGFNEITDECLVHLK--GLTNLESLNL 283 (396)
Q Consensus 213 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~-------~~L~~L~l~~~~~~~~~~~~l~--~~~~L~~L~l 283 (396)
+|.+.......+..+++|+.|++++|.+.......+... ++|+.|++++|.+.. .+..+. .+++|+.|++
T Consensus 442 ~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~~~l~~L~~L~L 520 (636)
T 4eco_A 442 NNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDL 520 (636)
T ss_dssp SSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCB-CCGGGSTTTCTTCCEEEC
T ss_pred CCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCc-cChhhhhccCCCcCEEEC
Confidence 887775544556678899999999988774333333322 389999999998874 355565 8999999999
Q ss_pred cCCCCChhHhHHHhCCCCccEEEcC------CCCCCchhHHhhcCCCCCCEEeccCcccChhhhHhhhCCCCCCEeecCC
Q 016017 284 DSCGIGDEGLVNLTGLCNLKCLELS------DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 357 (396)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~L~~L~l~------~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 357 (396)
++|.+.. .+..+..+++|+.|+++ +|.+.+..+..+..+++|++|++++|.++. ++..+. ++|+.|++++
T Consensus 521 s~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-ip~~~~--~~L~~L~Ls~ 596 (636)
T 4eco_A 521 SYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKIT--PNISVLDIKD 596 (636)
T ss_dssp CSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCB-CCSCCC--TTCCEEECCS
T ss_pred CCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCCc-cCHhHh--CcCCEEECcC
Confidence 9999987 56678889999999994 566776667788889999999999999954 454443 8999999999
Q ss_pred CCCcHH-----HHHHHhcC---ccCCeeecCCCc
Q 016017 358 RQITDT-----GLAALTSL---TGLTHLDLFGAR 383 (396)
Q Consensus 358 ~~l~~~-----~~~~l~~~---~~L~~l~l~~~~ 383 (396)
|++... .+...... ...+..++.+|.
T Consensus 597 N~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~C~ 630 (636)
T 4eco_A 597 NPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCD 630 (636)
T ss_dssp CTTCEEECTTTHHHHHTTCCEEECCTTSEEESCG
T ss_pred CCCccccHHhcchhhhcccceeecCCccccCCCc
Confidence 977642 23333332 233566777773
No 27
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=4.7e-31 Score=255.52 Aligned_cols=321 Identities=15% Similarity=0.085 Sum_probs=161.3
Q ss_pred cCCCccEEEeecCCCCh-----------------HHHHHhh--CCCCCCeeeccCCcccChhHHHhhhCCCCCcEEeccC
Q 016017 55 QGSSLLSVDLSGSDVTD-----------------SGLIHLK--DCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115 (396)
Q Consensus 55 ~~~~l~~L~l~~~~~~~-----------------~~~~~l~--~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 115 (396)
.+++|+.|+++++.+++ ..+..++ ++++|++|++++| .+....+..++++++|++|++++
T Consensus 446 ~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N-~l~~~iP~~l~~L~~L~~L~Ls~ 524 (876)
T 4ecn_A 446 RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNC-PNMTQLPDFLYDLPELQSLNIAC 524 (876)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESC-TTCCSCCGGGGGCSSCCEEECTT
T ss_pred cCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCC-CCCccChHHHhCCCCCCEEECcC
Confidence 45666666666666655 2444444 6666666666655 33444445556666666666666
Q ss_pred CccccH-HHHHHHhCC-------CCCcEecccccccccCccc--ccCCCCcccEEecCCCCCccccccccccCCCCccEE
Q 016017 116 NNAITA-QGMKAFAGL-------INLVKLDLERCTRIHGGLV--NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185 (396)
Q Consensus 116 ~~~~~~-~~~~~~~~~-------~~L~~L~l~~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L 185 (396)
|..+.. ..|..+..+ ++|++|++++|... ..+. .+..+++|+.|+++++. ++ ..+ .+..+++|+.|
T Consensus 525 N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~-l~-~lp-~~~~L~~L~~L 600 (876)
T 4ecn_A 525 NRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNK-VR-HLE-AFGTNVKLTDL 600 (876)
T ss_dssp CTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSC-CC-BCC-CCCTTSEESEE
T ss_pred CCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCC-cc-cch-hhcCCCcceEE
Confidence 642233 333333332 36666666665433 3333 45556666666666533 22 122 45555566666
Q ss_pred EeecCCCChhHHHhccCCCC-CCEEEecCCCCChhhHHHHhcC-------------------------------CCCCEE
Q 016017 186 QISCSKVTDSGIAYLKGLQK-LTLLNLEGCPVTAACLDSLSAL-------------------------------GSLFYL 233 (396)
Q Consensus 186 ~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~-------------------------------~~L~~L 233 (396)
++++|.+. ..+..+..+++ |+.|++++|.+.. .+..+... ++|+.|
T Consensus 601 ~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~-lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L 678 (876)
T 4ecn_A 601 KLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTV 678 (876)
T ss_dssp ECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCS-CCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEE
T ss_pred ECcCCccc-cchHHHhhccccCCEEECcCCCCCc-CchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEE
Confidence 66655555 33334444555 5555555554442 22222222 245555
Q ss_pred ECCCCCCChHHHHhhhcCCCCcEEEccCCcCcHHHHHHhh-------CCCCCCEEeccCCCCChhHhHHHh--CCCCccE
Q 016017 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK-------GLTNLESLNLDSCGIGDEGLVNLT--GLCNLKC 304 (396)
Q Consensus 234 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~-------~~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~ 304 (396)
++++|.+.......+..+++|+.|++++|.+.......+. ++++|+.|++++|.+.. .+..+. .+++|+.
T Consensus 679 ~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~-lp~~l~~~~l~~L~~ 757 (876)
T 4ecn_A 679 TLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRATTLPYLSN 757 (876)
T ss_dssp ECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCC-CCGGGSTTTCTTCCE
T ss_pred EccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCcc-chHHhhhccCCCcCE
Confidence 5555554433333333455555555555554422111111 11255666666655552 233333 5556666
Q ss_pred EEcCCCCCCchhHHhhcCCCCCCEEeccC------cccChhhhHhhhCCCCCCEeecCCCCCcHHHHHHHhcCccCCeee
Q 016017 305 LELSDTQVGSSGLRHLSGLTNLESINLSF------TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 378 (396)
Q Consensus 305 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~------~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~ 378 (396)
|++++|.++. .+..+..+++|+.|++++ |.+....+..+..+++|+.|++++|.+... +..+. ++|+.|+
T Consensus 758 L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~I-p~~l~--~~L~~Ld 833 (876)
T 4ecn_A 758 MDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKV-DEKLT--PQLYILD 833 (876)
T ss_dssp EECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBC-CSCCC--SSSCEEE
T ss_pred EEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCcc-CHhhc--CCCCEEE
Confidence 6666665554 233344556666666644 444444555555566666666666665332 22222 4566666
Q ss_pred cCCCccChH
Q 016017 379 LFGARITDS 387 (396)
Q Consensus 379 l~~~~l~~~ 387 (396)
|++|++...
T Consensus 834 Ls~N~l~~i 842 (876)
T 4ecn_A 834 IADNPNISI 842 (876)
T ss_dssp CCSCTTCEE
T ss_pred CCCCCCCcc
Confidence 666655443
No 28
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.97 E-value=1.1e-30 Score=251.91 Aligned_cols=330 Identities=22% Similarity=0.201 Sum_probs=178.7
Q ss_pred CCCccEEEeecCCCChHHHHHhhCCCCCCeeeccCCcccChhHHHhhhCCCCCcEEeccCCccccHHHHHHHhCCCCCcE
Q 016017 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135 (396)
Q Consensus 56 ~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 135 (396)
+++|++|+++++.+++..+..+.++++|++|+++++ .+.......++++++|++|++++|.. ....+..++++++|++
T Consensus 48 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~ 125 (680)
T 1ziw_A 48 YSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLTELHLMSNSI-QKIKNNPFVKQKNLIT 125 (680)
T ss_dssp GTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCC-CCCCSCTTTTCTTCCE
T ss_pred CCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC-ccCccChhhhccCCCCCEEECCCCcc-CccChhHccccCCCCE
Confidence 445555555555444444444445555555555443 33333233344455555555555432 2222233444555555
Q ss_pred ecccccccccCcccccCCCCcccEEecCCCCCcccccccccc--CCCCccEEEeecCCCChhHHHhccCCCCCCEEEecC
Q 016017 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS--GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213 (396)
Q Consensus 136 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 213 (396)
|++++|......+..+..+++|+.|+++++. ++......+. .+++|++|++++|.+....+..+..+++|+.+++.+
T Consensus 126 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 204 (680)
T 1ziw_A 126 LDLSHNGLSSTKLGTQVQLENLQELLLSNNK-IQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNN 204 (680)
T ss_dssp EECCSSCCSCCCCCSSSCCTTCCEEECCSSC-CCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTT
T ss_pred EECCCCcccccCchhhcccccCCEEEccCCc-ccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccc
Confidence 5555543333333334445555555554422 2222222221 234455555555544444444444445555555554
Q ss_pred CCCChhhHHHHh---cCCCCCEEECCCCCCChHHHHhhhcCC--CCcEEEccCCcCcHHHHHHhhCCCCCCEEeccCCCC
Q 016017 214 CPVTAACLDSLS---ALGSLFYLNLNRCQLSDDGCEKFSKIG--SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 288 (396)
Q Consensus 214 ~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~l~~~~--~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 288 (396)
+.+.......+. ..++|+.|+++++.+....+..+..++ +|+.|++++|.+....+..+..+++|++|++++|.+
T Consensus 205 ~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 284 (680)
T 1ziw_A 205 VQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNI 284 (680)
T ss_dssp CCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCB
T ss_pred cccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCcc
Confidence 443322111111 236677777777766655555555553 377888877776655555667777788888877777
Q ss_pred ChhHhHHHhCCCCccEEEcCCCCCCc---------hhHHhhcCCCCCCEEeccCcccChhhhHhhhCCCCCCEeecCCCC
Q 016017 289 GDEGLVNLTGLCNLKCLELSDTQVGS---------SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 359 (396)
Q Consensus 289 ~~~~~~~~~~~~~L~~L~l~~~~~~~---------~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 359 (396)
....+..+..+++|+.|++.++.... .....+..+++|++|++++|.+++..+..+..+++|+.|++++|.
T Consensus 285 ~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 364 (680)
T 1ziw_A 285 QHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSF 364 (680)
T ss_dssp SEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCB
T ss_pred CccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCc
Confidence 66666667777778888877653321 111244567888888888887777666667778888888888775
Q ss_pred Cc--HHHHHHHhc--CccCCeeecCCCccChHH
Q 016017 360 IT--DTGLAALTS--LTGLTHLDLFGARITDSG 388 (396)
Q Consensus 360 l~--~~~~~~l~~--~~~L~~l~l~~~~l~~~~ 388 (396)
+. ......+.. .++|+.|++++|++++..
T Consensus 365 ~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~ 397 (680)
T 1ziw_A 365 TSLRTLTNETFVSLAHSPLHILNLTKNKISKIE 397 (680)
T ss_dssp SCCCEECTTTTGGGTTSCCCEEECTTSCCCEEC
T ss_pred hhhhhcchhhhcccccCcCceEECCCCCCCeEC
Confidence 32 111122222 257888888888777653
No 29
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.97 E-value=6.1e-31 Score=247.76 Aligned_cols=160 Identities=19% Similarity=0.229 Sum_probs=126.0
Q ss_pred hcCCCCCEEECCCCCCChHHHHhhhcCCCCcEEEccCCcCcH--HHHHHhhCCCCCCEEeccCCCCCh-hHhHHHhCCCC
Q 016017 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD--ECLVHLKGLTNLESLNLDSCGIGD-EGLVNLTGLCN 301 (396)
Q Consensus 225 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~ 301 (396)
..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.. ..+..+..+++|+.|++++|.+.. .....+..+++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~ 429 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence 456888999999888877666777888899999999888775 334567888999999999998876 33334667789
Q ss_pred ccEEEcCCCCCCchhHHhhcCCCCCCEEeccCcccChhhhHhhhCCCCCCEeecCCCCCcHHHHHHHhcCccCCeeecCC
Q 016017 302 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 381 (396)
Q Consensus 302 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~ 381 (396)
|++|++++|.+++..+..+. ++|++|++++|.++. .+..+..+++|+.|++++|+++......+..+++|+.+++++
T Consensus 430 L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~-ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~ 506 (562)
T 3a79_B 430 ILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHD 506 (562)
T ss_dssp CCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCC-CCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCS
T ss_pred CCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcc-cChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecC
Confidence 99999999988764433332 699999999998885 455556899999999999999965444488899999999999
Q ss_pred CccChH
Q 016017 382 ARITDS 387 (396)
Q Consensus 382 ~~l~~~ 387 (396)
|+++.+
T Consensus 507 N~~~c~ 512 (562)
T 3a79_B 507 NPWDCT 512 (562)
T ss_dssp CCBCCC
T ss_pred CCcCCC
Confidence 988753
No 30
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=2.3e-30 Score=245.11 Aligned_cols=318 Identities=18% Similarity=0.116 Sum_probs=260.0
Q ss_pred cCCCccEEEeecCCCChHHHHHhhCCCCCCeeeccCCcccChhHHHhhhCCCCCcEEeccCCccccHHHHHHHhCCCCCc
Q 016017 55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134 (396)
Q Consensus 55 ~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 134 (396)
..++++.++++++.++......+..+++|++|+++++ .+....+..++.+++|++|++++|. +....+..++.+++|+
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~ 126 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLT 126 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCC
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCC-CCCCCChHHhcCCCCCCEEECCCCc-CCCCCHHHHcCCCCCC
Confidence 3578999999999888766777889999999999987 5777666788999999999999997 4555556778999999
Q ss_pred EecccccccccCcccccCCCCcccEEecCCCCCccccccccccCCCCccEEEeecCCCChhHHHhccCCCCCCEEEecCC
Q 016017 135 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 214 (396)
Q Consensus 135 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 214 (396)
+|++++|.........+..+++|+.|+++++ .++...+..+..+++|++|++++|.++... +..+++|+.|+++++
T Consensus 127 ~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n 202 (597)
T 3oja_B 127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYN 202 (597)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSS
T ss_pred EEEeeCCCCCCCCHHHhccCCCCCEEEeeCC-cCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccC
Confidence 9999998655433344689999999999984 556666777889999999999999888653 566789999999998
Q ss_pred CCChhhHHHHhcCCCCCEEECCCCCCChHHHHhhhcCCCCcEEEccCCcCcHHHHHHhhCCCCCCEEeccCCCCChhHhH
Q 016017 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294 (396)
Q Consensus 215 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 294 (396)
.+.. +...++|+.|++++|.+..... ...++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+..+.
T Consensus 203 ~l~~-----l~~~~~L~~L~ls~n~l~~~~~---~~~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~ 272 (597)
T 3oja_B 203 LLST-----LAIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYH 272 (597)
T ss_dssp CCSE-----EECCTTCSEEECCSSCCCEEEC---SCCSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESG
T ss_pred cccc-----ccCCchhheeeccCCccccccc---ccCCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHH
Confidence 7765 2356789999999998764432 2246899999999988763 5678899999999999999887788
Q ss_pred HHhCCCCccEEEcCCCCCCchhHHhhcCCCCCCEEeccCcccChhhhHhhhCCCCCCEeecCCCCCcHHHHHHHhcCccC
Q 016017 295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 374 (396)
Q Consensus 295 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L 374 (396)
.+..+++|+.|++++|.++.. +..+..+++|+.|++++|.++. .+..+..+++|+.|++++|.+.... +..+++|
T Consensus 273 ~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L 347 (597)
T 3oja_B 273 PFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVTLK---LSTHHTL 347 (597)
T ss_dssp GGTTCSSCCEEECTTSCCCEE-ECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCC
T ss_pred HhcCccCCCEEECCCCCCCCC-CcccccCCCCcEEECCCCCCCc-cCcccccCCCCCEEECCCCCCCCcC---hhhcCCC
Confidence 889999999999999998764 2334568999999999998885 5566778899999999999988752 6778999
Q ss_pred CeeecCCCccChHHHHHHH
Q 016017 375 THLDLFGARITDSGAAYLR 393 (396)
Q Consensus 375 ~~l~l~~~~l~~~~~~~l~ 393 (396)
+.|++++|+++......+.
T Consensus 348 ~~L~l~~N~~~~~~~~~~~ 366 (597)
T 3oja_B 348 KNLTLSHNDWDCNSLRALF 366 (597)
T ss_dssp SEEECCSSCEEHHHHHHHT
T ss_pred CEEEeeCCCCCChhHHHHH
Confidence 9999999999888766543
No 31
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.97 E-value=5.9e-29 Score=228.71 Aligned_cols=306 Identities=29% Similarity=0.350 Sum_probs=214.9
Q ss_pred CCCccEEEeecCCCChHHHHHhhCCCCCCeeeccCCcccChhHHHhhhCCCCCcEEeccCCccccHHHHHHHhCCCCCcE
Q 016017 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135 (396)
Q Consensus 56 ~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 135 (396)
+++++.|+++++.++.. ..+..+++|++|+++++ .+....+ +.++++|++|++++|.... ..+ +..+++|++
T Consensus 45 l~~l~~L~l~~~~i~~l--~~~~~l~~L~~L~Ls~n-~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~~--~~~l~~L~~ 116 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNN-QLTDITP--LKNLTKLVDILMNNNQIAD-ITP--LANLTNLTG 116 (466)
T ss_dssp HHTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCC-CGG--GTTCTTCCE
T ss_pred hccccEEecCCCCCccC--cchhhhcCCCEEECCCC-ccCCchh--hhccccCCEEECCCCcccc-Chh--hcCCCCCCE
Confidence 46899999999988752 34788999999999997 4555433 8899999999999997533 322 889999999
Q ss_pred ecccccccccCcccccCCCCcccEEecCCCCCccccc-------------------cccccCCCCccEEEeecCCCChhH
Q 016017 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD-------------------MKPLSGLTNLKSLQISCSKVTDSG 196 (396)
Q Consensus 136 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-------------------~~~l~~~~~L~~L~l~~~~~~~~~ 196 (396)
|++++|..... ..+..+++|+.|+++++. +.... ...+..+++|++|++++|.+...
T Consensus 117 L~L~~n~l~~~--~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~- 192 (466)
T 1o6v_A 117 LTLFNNQITDI--DPLKNLTNLNRLELSSNT-ISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI- 192 (466)
T ss_dssp EECCSSCCCCC--GGGTTCTTCSEEEEEEEE-ECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC-
T ss_pred EECCCCCCCCC--hHHcCCCCCCEEECCCCc-cCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC-
Confidence 99999854332 238899999999998854 22211 01234455666666666655543
Q ss_pred HHhccCCCCCCEEEecCCCCChhhHHHHhcCCCCCEEECCCCCCChHHHHhhhcCCCCcEEEccCCcCcHHHHHHhhCCC
Q 016017 197 IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 276 (396)
Q Consensus 197 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~ 276 (396)
..+..+++|+.|++++|.+....+ +..+++|+.|++++|.+... ..+..+++|+.|++++|.+....+ +..++
T Consensus 193 -~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~ 265 (466)
T 1o6v_A 193 -SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLT 265 (466)
T ss_dssp -GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCT
T ss_pred -hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCC
Confidence 235566666666666666554322 45566777777777665543 245667777777777776655432 66777
Q ss_pred CCCEEeccCCCCChhHhHHHhCCCCccEEEcCCCCCCchhHHhhcCCCCCCEEeccCcccChhhhHhhhCCCCCCEeecC
Q 016017 277 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356 (396)
Q Consensus 277 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 356 (396)
+|+.|++++|.+.+..+ +..+++|+.|++++|.+++... +..+++|+.|++++|.+++..+ +..+++|+.|+++
T Consensus 266 ~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~ 339 (466)
T 1o6v_A 266 KLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFY 339 (466)
T ss_dssp TCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECC
T ss_pred CCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECC
Confidence 77888887777765433 6677788888888887765433 6677888888888887776544 5677888888888
Q ss_pred CCCCcHHHHHHHhcCccCCeeecCCCccChHH
Q 016017 357 ARQITDTGLAALTSLTGLTHLDLFGARITDSG 388 (396)
Q Consensus 357 ~~~l~~~~~~~l~~~~~L~~l~l~~~~l~~~~ 388 (396)
+|++.+. ..+..+++|+.|++++|++++..
T Consensus 340 ~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~ 369 (466)
T 1o6v_A 340 NNKVSDV--SSLANLTNINWLSAGHNQISDLT 369 (466)
T ss_dssp SSCCCCC--GGGTTCTTCCEEECCSSCCCBCG
T ss_pred CCccCCc--hhhccCCCCCEEeCCCCccCccc
Confidence 8887764 46777888888888888877643
No 32
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.97 E-value=3.3e-32 Score=267.48 Aligned_cols=353 Identities=22% Similarity=0.185 Sum_probs=194.3
Q ss_pred ceeEeccCCCCCCCchHHHHHHhcCCCccEEEeecCCCChHHHHHhhCCCCCCeeeccCCcccChhHHH--hhhCCCCCc
Q 016017 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLE--HLRGLSNLT 109 (396)
Q Consensus 32 ~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~--~l~~~~~L~ 109 (396)
.++.+++.++.....- .......+++|++|+++++.++...+..+.++++|++|++++| .+.+..+. .++++++|+
T Consensus 49 ~L~~LdLs~n~~~~~i-~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~L~~L~ 126 (844)
T 3j0a_A 49 QLQLLELGSQYTPLTI-DKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFC-GLSDAVLKDGYFRNLKALT 126 (844)
T ss_dssp SCSEEEECTTCCCCEE-CTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTC-CCSSCCSTTCCCSSCSSCC
T ss_pred cCeEEeCCCCCCcccc-CHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCC-CCCcccccCccccccCCCC
Confidence 4666666666321110 0111245677777777777777666667777777777777776 44442232 266777777
Q ss_pred EEeccCCccccHHHHHHHhCCCCCcEecccccccccCccccc--------------------------CCCCc------c
Q 016017 110 SLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL--------------------------KGLMK------L 157 (396)
Q Consensus 110 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l--------------------------~~~~~------L 157 (396)
+|++++|..........++++++|++|++++|......+..+ ..+++ |
T Consensus 127 ~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L 206 (844)
T 3j0a_A 127 RLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVL 206 (844)
T ss_dssp EEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCB
T ss_pred EEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCce
Confidence 777777764332222356677777777777664322221111 11111 5
Q ss_pred cEEecCCCCCcccccc------------------------------------ccccC--CCCccEEEeecCCCChhHHHh
Q 016017 158 ESLNIKWCNCITDSDM------------------------------------KPLSG--LTNLKSLQISCSKVTDSGIAY 199 (396)
Q Consensus 158 ~~L~l~~~~~~~~~~~------------------------------------~~l~~--~~~L~~L~l~~~~~~~~~~~~ 199 (396)
+.|+++++.. ....+ ..+.. .++|+.|++++|.+....+..
T Consensus 207 ~~L~Ls~n~l-~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~ 285 (844)
T 3j0a_A 207 EILDVSGNGW-TVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRV 285 (844)
T ss_dssp SEEBCSSCCS-STTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCC
T ss_pred eEEecCCCcC-chhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhh
Confidence 5666655321 10000 01111 246677777777666555556
Q ss_pred ccCCCCCCEEEecCCCCChhhHHHHhcCCCCCEEECCCCCCChHHHHhhhcCCCCcEEEccCCcCcHHHHHHhhCCCCCC
Q 016017 200 LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279 (396)
Q Consensus 200 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 279 (396)
+..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|+
T Consensus 286 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~ 365 (844)
T 3j0a_A 286 FETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQ 365 (844)
T ss_dssp SSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCC
T ss_pred hhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCC
Confidence 66777777777777777665555666777777777777776655555667777777777777766554444566677777
Q ss_pred EEeccCCCCChhH----------------------------------------hHHHhCCCCccEEEcCCCCCCchhHH-
Q 016017 280 SLNLDSCGIGDEG----------------------------------------LVNLTGLCNLKCLELSDTQVGSSGLR- 318 (396)
Q Consensus 280 ~L~l~~~~~~~~~----------------------------------------~~~~~~~~~L~~L~l~~~~~~~~~~~- 318 (396)
.|++++|.+.... ...+..+++|+.|++++|+++.....
T Consensus 366 ~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 445 (844)
T 3j0a_A 366 TLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQ 445 (844)
T ss_dssp EEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSS
T ss_pred EEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCccccccccc
Confidence 7777777654311 01112333444444444433321110
Q ss_pred hhcCCCCCCEEeccCcccCh-----hhhHhhhCCCCCCEeecCCCCCcHHHHHHHhcCccCCeeecCCCccChH
Q 016017 319 HLSGLTNLESINLSFTGISD-----GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 387 (396)
Q Consensus 319 ~l~~~~~L~~L~l~~~~~~~-----~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~l~~~ 387 (396)
.+..+++|+.|++++|.++. ..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|+++..
T Consensus 446 ~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l 519 (844)
T 3j0a_A 446 TPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVL 519 (844)
T ss_dssp SSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSC
T ss_pred ccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCcc
Confidence 11123333333333333321 1112234456666666666666655555566677777777777776643
No 33
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=9e-30 Score=237.85 Aligned_cols=321 Identities=18% Similarity=0.163 Sum_probs=221.9
Q ss_pred CCccEEEeecCCCChHHHHHhhCCCCCCeeeccCCcccChhHHHhhhCCCCCcEEeccCCccccHHHHHHHhCCCCCcEe
Q 016017 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136 (396)
Q Consensus 57 ~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 136 (396)
+++++|+++++.+++..+..+.++++|++|+++++ .+....+..++++++|++|++++|.. ... +.. .+++|++|
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~l-p~~--~l~~L~~L 95 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHN-RIQYLDISVFKFNQELEYLDLSHNKL-VKI-SCH--PTVNLKHL 95 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSS-CCCEEEGGGGTTCTTCCEEECCSSCC-CEE-ECC--CCCCCSEE
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCC-ccCCcChHHhhcccCCCEEecCCCce-eec-Ccc--ccCCccEE
Confidence 79999999999999877788999999999999997 67777778899999999999999975 322 222 79999999
Q ss_pred ccccccccc-CcccccCCCCcccEEecCCCCCccccccccccCCCCc--cEEEeecCCC--ChhHHHh------------
Q 016017 137 DLERCTRIH-GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNL--KSLQISCSKV--TDSGIAY------------ 199 (396)
Q Consensus 137 ~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L--~~L~l~~~~~--~~~~~~~------------ 199 (396)
++++|.... ..+..+..+++|+.|+++++. ++. ..+..+++| ++|++++|.+ ....+..
T Consensus 96 ~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~ 171 (520)
T 2z7x_B 96 DLSFNAFDALPICKEFGNMSQLKFLGLSTTH-LEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIV 171 (520)
T ss_dssp ECCSSCCSSCCCCGGGGGCTTCCEEEEEESS-CCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEE
T ss_pred eccCCccccccchhhhccCCcceEEEecCcc-cch---hhccccccceeeEEEeecccccccccccccccccccceEEEE
Confidence 999987655 245678999999999999854 433 345667777 9999999877 2222222
Q ss_pred --------------------------------------------ccCCCCCCEEEecCCCCChhhHHHHh---cCCCCCE
Q 016017 200 --------------------------------------------LKGLQKLTLLNLEGCPVTAACLDSLS---ALGSLFY 232 (396)
Q Consensus 200 --------------------------------------------~~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~L~~ 232 (396)
+..+++|+.|+++++.+.......+. ..++|++
T Consensus 172 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~ 251 (520)
T 2z7x_B 172 FPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWY 251 (520)
T ss_dssp CCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSE
T ss_pred eccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccE
Confidence 22333344444433332221111110 1234444
Q ss_pred EECCCCCCChHHHH-------------------------------h----------------------hhcCCCCcEEEc
Q 016017 233 LNLNRCQLSDDGCE-------------------------------K----------------------FSKIGSLKVLNL 259 (396)
Q Consensus 233 L~l~~~~~~~~~~~-------------------------------~----------------------l~~~~~L~~L~l 259 (396)
|++++|.+.+..+. . ...+++|+.|++
T Consensus 252 L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L 331 (520)
T 2z7x_B 252 FSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDF 331 (520)
T ss_dssp EEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEEC
T ss_pred EEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEe
Confidence 44444332211110 0 145677888888
Q ss_pred cCCcCcHHHHHHhhCCCCCCEEeccCCCCCh--hHhHHHhCCCCccEEEcCCCCCCc-hhHHhhcCCCCCCEEeccCccc
Q 016017 260 GFNEITDECLVHLKGLTNLESLNLDSCGIGD--EGLVNLTGLCNLKCLELSDTQVGS-SGLRHLSGLTNLESINLSFTGI 336 (396)
Q Consensus 260 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~ 336 (396)
++|.+.+..+..+..+++|+.|++++|.+.+ ..+..+..+++|++|++++|.++. .....+..+++|++|++++|.+
T Consensus 332 s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l 411 (520)
T 2z7x_B 332 SNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNIL 411 (520)
T ss_dssp CSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCC
T ss_pred ECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCC
Confidence 8877776556667777888888888887775 334567778888888888887766 3333456678888888888877
Q ss_pred ChhhhHhhhCCCCCCEeecCCCCCcHHHHHHHhcCccCCeeecCCCccChHHH
Q 016017 337 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 389 (396)
Q Consensus 337 ~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~l~~~~~ 389 (396)
++..+..+. ++|+.|++++|+++.. +..+..+++|++|++++|+++..+.
T Consensus 412 ~~~~~~~l~--~~L~~L~Ls~N~l~~i-p~~~~~l~~L~~L~L~~N~l~~l~~ 461 (520)
T 2z7x_B 412 TDTIFRCLP--PRIKVLDLHSNKIKSI-PKQVVKLEALQELNVASNQLKSVPD 461 (520)
T ss_dssp CGGGGGSCC--TTCCEEECCSSCCCCC-CGGGGGCTTCCEEECCSSCCCCCCT
T ss_pred Ccchhhhhc--ccCCEEECCCCccccc-chhhhcCCCCCEEECCCCcCCccCH
Confidence 765554443 6888888888888844 4555688999999999998876543
No 34
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=1.5e-30 Score=251.98 Aligned_cols=302 Identities=14% Similarity=0.086 Sum_probs=223.1
Q ss_pred cCCCccEEEeecCCCChHHHHHhhCCCCCCeeeccCCcccCh-hHHHhhhC-------CCCCcEEeccCCccccHHHHH-
Q 016017 55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISD-GGLEHLRG-------LSNLTSLSFRRNNAITAQGMK- 125 (396)
Q Consensus 55 ~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~l~~-------~~~L~~L~l~~~~~~~~~~~~- 125 (396)
.+++|+.|+++++.+.+..+..+.++++|++|+++++..+.. ..+..++. +++|++|++++|... ..+.
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~--~ip~~ 566 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE--EFPAS 566 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC--BCCCH
T ss_pred cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC--ccCCh
Confidence 678999999999988888888899999999999998743665 55555544 459999999998753 3344
Q ss_pred -HHhCCCCCcEecccccccccCcccccCCCCcccEEecCCCCCccccccccccCCCC-ccEEEeecCCCChhHHHhcc--
Q 016017 126 -AFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN-LKSLQISCSKVTDSGIAYLK-- 201 (396)
Q Consensus 126 -~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~~-- 201 (396)
.+..+++|++|++++|... ..+ .+..+++|+.|+++++. ++ ..+..+..+++ |+.|++++|.+... +..+.
T Consensus 567 ~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~-l~-~lp~~l~~l~~~L~~L~Ls~N~L~~l-p~~~~~~ 641 (876)
T 4ecn_A 567 ASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQ-IE-EIPEDFCAFTDQVEGLGFSHNKLKYI-PNIFNAK 641 (876)
T ss_dssp HHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSC-CS-CCCTTSCEECTTCCEEECCSSCCCSC-CSCCCTT
T ss_pred hhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCc-cc-cchHHHhhccccCCEEECcCCCCCcC-chhhhcc
Confidence 7888999999999987654 333 67778888888887744 33 34445666666 66666666655421 11111
Q ss_pred -----------------------------CCCCCCEEEecCCCCChhhHHHHhcCCCCCEEECCCCCCChHHHHhhh---
Q 016017 202 -----------------------------GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS--- 249 (396)
Q Consensus 202 -----------------------------~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~--- 249 (396)
.+++|+.|++++|.+.......+..+++|+.|++++|.+.......+.
T Consensus 642 ~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~ 721 (876)
T 4ecn_A 642 SVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKD 721 (876)
T ss_dssp CSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTT
T ss_pred ccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhcccc
Confidence 223677888888877754444556899999999999988743332222
Q ss_pred ----cCCCCcEEEccCCcCcHHHHHHhh--CCCCCCEEeccCCCCChhHhHHHhCCCCccEEEcCC------CCCCchhH
Q 016017 250 ----KIGSLKVLNLGFNEITDECLVHLK--GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD------TQVGSSGL 317 (396)
Q Consensus 250 ----~~~~L~~L~l~~~~~~~~~~~~l~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~------~~~~~~~~ 317 (396)
++++|+.|++++|.+.. .+..+. .+++|+.|++++|.+.. .+..+..+++|+.|++++ |.+....+
T Consensus 722 ~~l~nl~~L~~L~Ls~N~L~~-lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip 799 (876)
T 4ecn_A 722 GNYKNTYLLTTIDLRFNKLTS-LSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWP 799 (876)
T ss_dssp SCCTTGGGCCEEECCSSCCCC-CCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCC
T ss_pred ccccccCCccEEECCCCCCcc-chHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccCh
Confidence 23489999999998874 355665 89999999999999886 466678899999999976 66776667
Q ss_pred HhhcCCCCCCEEeccCcccChhhhHhhhCCCCCCEeecCCCCCcHHHHHHH
Q 016017 318 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 368 (396)
Q Consensus 318 ~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l 368 (396)
..+..+++|+.|++++|.++. ++..+. ++|+.|++++|++....+..+
T Consensus 800 ~~l~~L~~L~~L~Ls~N~L~~-Ip~~l~--~~L~~LdLs~N~l~~i~~~~~ 847 (876)
T 4ecn_A 800 TGITTCPSLIQLQIGSNDIRK-VDEKLT--PQLYILDIADNPNISIDVTSV 847 (876)
T ss_dssp TTGGGCSSCCEEECCSSCCCB-CCSCCC--SSSCEEECCSCTTCEEECGGG
T ss_pred HHHhcCCCCCEEECCCCCCCc-cCHhhc--CCCCEEECCCCCCCccChHHc
Confidence 788889999999999999844 455443 799999999998875433333
No 35
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.96 E-value=2.4e-29 Score=236.94 Aligned_cols=322 Identities=18% Similarity=0.158 Sum_probs=219.7
Q ss_pred CCCccEEEeecCCCChHHHHHhhCCCCCCeeeccCCcccChhHHHhhhCCCCCcEEeccCCccccHHHHHHHhCCCCCcE
Q 016017 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135 (396)
Q Consensus 56 ~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 135 (396)
++++++|+++++.+++..+..+.++++|++|+++++ .+....+..+.++++|++|++++|.. ... +.. .+++|++
T Consensus 51 ~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~l-p~~--~l~~L~~ 125 (562)
T 3a79_B 51 PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHN-RIRSLDFHVFLFNQDLEYLDVSHNRL-QNI-SCC--PMASLRH 125 (562)
T ss_dssp CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECTTSCC-CEE-CSC--CCTTCSE
T ss_pred CCCcCEEECCCCCccccChhhhccCCCccEEECCCC-CCCcCCHHHhCCCCCCCEEECCCCcC-Ccc-Ccc--ccccCCE
Confidence 479999999999998777788899999999999987 67777677889999999999999875 322 222 7899999
Q ss_pred ecccccccccCc-ccccCCCCcccEEecCCCCCccccccccccCCCCc--cEEEeecCCC--ChhHHHhccC--------
Q 016017 136 LDLERCTRIHGG-LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNL--KSLQISCSKV--TDSGIAYLKG-------- 202 (396)
Q Consensus 136 L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L--~~L~l~~~~~--~~~~~~~~~~-------- 202 (396)
|++++|...... +..+.++++|+.|+++++ .++.. .+..+++| ++|++++|.+ ....+..+..
T Consensus 126 L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n-~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l 201 (562)
T 3a79_B 126 LDLSFNDFDVLPVCKEFGNLTKLTFLGLSAA-KFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHL 201 (562)
T ss_dssp EECCSSCCSBCCCCGGGGGCTTCCEEEEECS-BCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEE
T ss_pred EECCCCCccccCchHhhcccCcccEEecCCC-ccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceEEE
Confidence 999998755433 356889999999999984 34433 33444455 9999999877 3322222211
Q ss_pred ------------------CCCCCEEEecCCC----------------------------CChhhHH---HHhcCCCCCEE
Q 016017 203 ------------------LQKLTLLNLEGCP----------------------------VTAACLD---SLSALGSLFYL 233 (396)
Q Consensus 203 ------------------~~~L~~L~l~~~~----------------------------~~~~~~~---~~~~~~~L~~L 233 (396)
+++|+.++++++. +...... .....++|++|
T Consensus 202 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L 281 (562)
T 3a79_B 202 VFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYL 281 (562)
T ss_dssp EECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEE
T ss_pred EecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEE
Confidence 2233333333321 1110000 00011234444
Q ss_pred ECCCCCCChHHH-------------------------------Hh----------------------hhcCCCCcEEEcc
Q 016017 234 NLNRCQLSDDGC-------------------------------EK----------------------FSKIGSLKVLNLG 260 (396)
Q Consensus 234 ~l~~~~~~~~~~-------------------------------~~----------------------l~~~~~L~~L~l~ 260 (396)
++++|.+.+..+ .. ...+++|+.|+++
T Consensus 282 ~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~ 361 (562)
T 3a79_B 282 NIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFT 361 (562)
T ss_dssp EEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECC
T ss_pred EEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECC
Confidence 443332221000 00 1567788888888
Q ss_pred CCcCcHHHHHHhhCCCCCCEEeccCCCCCh--hHhHHHhCCCCccEEEcCCCCCCc-hhHHhhcCCCCCCEEeccCcccC
Q 016017 261 FNEITDECLVHLKGLTNLESLNLDSCGIGD--EGLVNLTGLCNLKCLELSDTQVGS-SGLRHLSGLTNLESINLSFTGIS 337 (396)
Q Consensus 261 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~ 337 (396)
+|.+.+..+..+..+++|+.|++++|.+.. ..+..+..+++|+.|++++|.++. .....+..+++|++|++++|.++
T Consensus 362 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~ 441 (562)
T 3a79_B 362 QNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLT 441 (562)
T ss_dssp SSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCC
T ss_pred CCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCC
Confidence 888877666677888889999998888875 334557788889999999888876 33334667788999999998887
Q ss_pred hhhhHhhhCCCCCCEeecCCCCCcHHHHHHHhcCccCCeeecCCCccChHHH
Q 016017 338 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 389 (396)
Q Consensus 338 ~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~l~~~~~ 389 (396)
+..+..+. ++|+.|++++|+++.. +..+..+++|++|++++|+++..+.
T Consensus 442 ~~~~~~l~--~~L~~L~L~~N~l~~i-p~~~~~l~~L~~L~L~~N~l~~l~~ 490 (562)
T 3a79_B 442 GSVFRCLP--PKVKVLDLHNNRIMSI-PKDVTHLQALQELNVASNQLKSVPD 490 (562)
T ss_dssp GGGGSSCC--TTCSEEECCSSCCCCC-CTTTTSSCCCSEEECCSSCCCCCCT
T ss_pred cchhhhhc--CcCCEEECCCCcCccc-ChhhcCCCCCCEEECCCCCCCCCCH
Confidence 65554432 6899999999998854 4445588999999999999886543
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.96 E-value=1.7e-28 Score=220.63 Aligned_cols=292 Identities=17% Similarity=0.093 Sum_probs=242.2
Q ss_pred CCCCCCeeeccCCcccChhHHHhhhCCCCCcEEeccCCccccHHHHHHHhCCCCCcEecccccccccCcccccCCCCccc
Q 016017 79 DCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158 (396)
Q Consensus 79 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 158 (396)
.+++++.|+++++ .+.......+..+++|++|++++|. +....+..+..+++|++|++++|......+..+..+++|+
T Consensus 43 ~l~~l~~l~l~~~-~l~~l~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 43 TLNNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 120 (390)
T ss_dssp GGCCCSEEEEESC-EESEECTHHHHHCCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred ccCCceEEEecCC-chhhCChhHhcccccCcEEECCCCc-ccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCC
Confidence 4589999999986 5666666667899999999999997 4444455788999999999999876655566689999999
Q ss_pred EEecCCCCCccccccccccCCCCccEEEeecCCCChhHHHhccCCCCCCEEEecCCCCChhhHHHHhcCCCCCEEECCCC
Q 016017 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238 (396)
Q Consensus 159 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 238 (396)
.|+++++ .++......+..+++|++|++++|.+....+..+..+++|+.|++++|.+... .+..+++|+.++++++
T Consensus 121 ~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n 196 (390)
T 3o6n_A 121 VLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYN 196 (390)
T ss_dssp EEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSS
T ss_pred EEECCCC-ccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccc
Confidence 9999994 45555555578899999999999999887777789999999999999988764 3567899999999998
Q ss_pred CCChHHHHhhhcCCCCcEEEccCCcCcHHHHHHhhCCCCCCEEeccCCCCChhHhHHHhCCCCccEEEcCCCCCCchhHH
Q 016017 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 318 (396)
Q Consensus 239 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 318 (396)
.+.. +...++|+.|+++++.+.... ....++|+.|++++|.+.+. ..+..+++|++|++++|.+++..+.
T Consensus 197 ~l~~-----~~~~~~L~~L~l~~n~l~~~~---~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~ 266 (390)
T 3o6n_A 197 LLST-----LAIPIAVEELDASHNSINVVR---GPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYH 266 (390)
T ss_dssp CCSE-----EECCSSCSEEECCSSCCCEEE---CCCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESG
T ss_pred cccc-----cCCCCcceEEECCCCeeeecc---ccccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChh
Confidence 7653 345678999999999876542 13457999999999998764 4678899999999999999988778
Q ss_pred hhcCCCCCCEEeccCcccChhhhHhhhCCCCCCEeecCCCCCcHHHHHHHhcCccCCeeecCCCccChHH
Q 016017 319 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 388 (396)
Q Consensus 319 ~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~l~~~~ 388 (396)
.+..+++|++|++++|.+++. +..+..+++|+.|++++|++... +..+..+++|++|++++|+++..+
T Consensus 267 ~~~~l~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L~~N~i~~~~ 334 (390)
T 3o6n_A 267 PFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLLHV-ERNQPQFDRLENLYLDHNSIVTLK 334 (390)
T ss_dssp GGTTCSSCCEEECCSSCCCEE-ECSSSCCTTCCEEECCSSCCCCC-GGGHHHHTTCSEEECCSSCCCCCC
T ss_pred HccccccCCEEECCCCcCccc-CcccCCCCCCCEEECCCCcceec-CccccccCcCCEEECCCCccceeC
Confidence 888999999999999998873 44456789999999999999865 445678899999999999998764
No 37
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.95 E-value=2.2e-29 Score=238.17 Aligned_cols=325 Identities=20% Similarity=0.136 Sum_probs=236.7
Q ss_pred ceeEeccCCCCCCCchHHHHHHhcCCCccEEEeecCCCChHHHHHhhCCCCCCeeeccCCcccChhHHHhhhCCCCCcEE
Q 016017 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSL 111 (396)
Q Consensus 32 ~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L 111 (396)
.++.+++.+|. +..-. ......+++|++|+++++.+++..+..+.++++|++|+++++ .+.......++++++|++|
T Consensus 53 ~L~~L~Ls~n~-i~~i~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L 129 (570)
T 2z63_A 53 ELQVLDLSRCE-IQTIE-DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKEL 129 (570)
T ss_dssp SCCEEECTTCC-CCEEC-TTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTS-CCCCSTTCSCTTCTTCCEE
T ss_pred CceEEECCCCc-CCccC-cccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccccc-ccccCCCccccccccccEE
Confidence 57888888873 22211 112246788999999888887766677888888888888876 4554433346778888888
Q ss_pred eccCCccccHHHHHHHhCCCCCcEecccccccccCcc-------------------------------------------
Q 016017 112 SFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGL------------------------------------------- 148 (396)
Q Consensus 112 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~------------------------------------------- 148 (396)
++++|.......+..++++++|++|++++|......+
T Consensus 130 ~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~ 209 (570)
T 2z63_A 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRN 209 (570)
T ss_dssp ECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEES
T ss_pred ecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEeccc
Confidence 8888764322234567777888888777653211100
Q ss_pred ------------------------------------------------------------------cccCCCCcccEEec
Q 016017 149 ------------------------------------------------------------------VNLKGLMKLESLNI 162 (396)
Q Consensus 149 ------------------------------------------------------------------~~l~~~~~L~~L~l 162 (396)
..+..+++|+.|++
T Consensus 210 n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l 289 (570)
T 2z63_A 210 NFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSL 289 (570)
T ss_dssp CCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEE
T ss_pred ccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEe
Confidence 01122344555555
Q ss_pred CCCCCcccccccc------------------------------------------ccCCCCccEEEeecCCCChhH--HH
Q 016017 163 KWCNCITDSDMKP------------------------------------------LSGLTNLKSLQISCSKVTDSG--IA 198 (396)
Q Consensus 163 ~~~~~~~~~~~~~------------------------------------------l~~~~~L~~L~l~~~~~~~~~--~~ 198 (396)
.++.. .. .+.. ...+++|++|++++|.++... +.
T Consensus 290 ~~~~l-~~-l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 367 (570)
T 2z63_A 290 VSVTI-ER-VKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQ 367 (570)
T ss_dssp ESCEE-CS-CCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEH
T ss_pred cCccc-hh-hhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccccc
Confidence 44221 11 0000 035677888888888776543 45
Q ss_pred hccCCCCCCEEEecCCCCChhhHHHHhcCCCCCEEECCCCCCChHHH-HhhhcCCCCcEEEccCCcCcHHHHHHhhCCCC
Q 016017 199 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC-EKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 277 (396)
Q Consensus 199 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 277 (396)
.+..+++|+.|++++|.+....+. +..+++|+.|++++|.+....+ ..+..+++|+.|++++|.+....+..+..+++
T Consensus 368 ~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 446 (570)
T 2z63_A 368 SDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 446 (570)
T ss_dssp HHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTT
T ss_pred cccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCc
Confidence 677899999999999987764333 7789999999999988765443 45778999999999999887766777889999
Q ss_pred CCEEeccCCCCC-hhHhHHHhCCCCccEEEcCCCCCCchhHHhhcCCCCCCEEeccCcccChhhhHhhhCCCCCCEeecC
Q 016017 278 LESLNLDSCGIG-DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356 (396)
Q Consensus 278 L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 356 (396)
|+.|++++|.+. ...+..+..+++|+.|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|+.|+++
T Consensus 447 L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 526 (570)
T 2z63_A 447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLH 526 (570)
T ss_dssp CCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred CcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEec
Confidence 999999999886 3455677889999999999999998878888899999999999999998777778899999999999
Q ss_pred CCCCcH
Q 016017 357 ARQITD 362 (396)
Q Consensus 357 ~~~l~~ 362 (396)
+|++..
T Consensus 527 ~N~~~~ 532 (570)
T 2z63_A 527 TNPWDC 532 (570)
T ss_dssp SSCBCC
T ss_pred CCcccC
Confidence 998774
No 38
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.95 E-value=7.4e-27 Score=221.92 Aligned_cols=346 Identities=18% Similarity=0.206 Sum_probs=246.3
Q ss_pred ceeEeccCCCCCCCchHHHHHHhcCCCccEEEeecC-CCChHHHHHh-hCCCCCCeeeccCCcccChhHHHhh----hCC
Q 016017 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGS-DVTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHL----RGL 105 (396)
Q Consensus 32 ~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~-~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~l----~~~ 105 (396)
.++.+.+.+|. +.+.....+...+++|++|+++++ .+++.....+ ..+++|++|++++|. +++.....+ ..+
T Consensus 106 ~L~~L~L~~~~-~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~ 183 (594)
T 2p1m_B 106 WLEEIRLKRMV-VTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFPDTY 183 (594)
T ss_dssp TCCEEEEESCB-CCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCTTC
T ss_pred CCCeEEeeCcE-EcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcC
Confidence 68899998884 777777777777889999999887 6665545444 478889999888874 444333333 255
Q ss_pred CCCcEEeccCCc-cccHHHHH-HHhCCCCCcEecccccccccC-------------------------------------
Q 016017 106 SNLTSLSFRRNN-AITAQGMK-AFAGLINLVKLDLERCTRIHG------------------------------------- 146 (396)
Q Consensus 106 ~~L~~L~l~~~~-~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~------------------------------------- 146 (396)
++|++|++++|. .+...... .+..+++|++|++++|.....
T Consensus 184 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~ 263 (594)
T 2p1m_B 184 TSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSG 263 (594)
T ss_dssp CCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHT
T ss_pred CcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhc
Confidence 677777777664 22222222 234566777776665511100
Q ss_pred -------------cccc----cCCCCcccEEecCCCCCccccccc-cccCCCCccEEEeecCCCChhHHHhc-cCCCCCC
Q 016017 147 -------------GLVN----LKGLMKLESLNIKWCNCITDSDMK-PLSGLTNLKSLQISCSKVTDSGIAYL-KGLQKLT 207 (396)
Q Consensus 147 -------------~~~~----l~~~~~L~~L~l~~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~ 207 (396)
.... +..+++|++|+++++. ++..... .+..+++|++|++++| +.+.....+ ..+++|+
T Consensus 264 ~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~ 341 (594)
T 2p1m_B 264 CKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLR 341 (594)
T ss_dssp CTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCC
T ss_pred CCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCC
Confidence 0001 1246789999999876 4433333 3568899999999988 554444434 4589999
Q ss_pred EEEecC---------CCCChhhHHHHh-cCCCCCEEECCCCCCChHHHHhhh-cCCCCcEEEcc--C----CcCc----H
Q 016017 208 LLNLEG---------CPVTAACLDSLS-ALGSLFYLNLNRCQLSDDGCEKFS-KIGSLKVLNLG--F----NEIT----D 266 (396)
Q Consensus 208 ~L~l~~---------~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~--~----~~~~----~ 266 (396)
.|++.+ +.++......+. .+++|+.|.+..+.+++.....+. .+++|+.|+++ + +.++ +
T Consensus 342 ~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~ 421 (594)
T 2p1m_B 342 ELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLD 421 (594)
T ss_dssp EEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTH
T ss_pred EEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchh
Confidence 999943 355554444444 589999999888888877766665 58999999998 3 3444 2
Q ss_pred -HHHHHhhCCCCCCEEeccCCCCChhHhHHHhC-CCCccEEEcCCCCCCchhHHhh-cCCCCCCEEeccCcccChhhhHh
Q 016017 267 -ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG-LCNLKCLELSDTQVGSSGLRHL-SGLTNLESINLSFTGISDGSLRK 343 (396)
Q Consensus 267 -~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~ 343 (396)
.....+..+++|+.|++++ .+.+.....+.. +++|+.|++++|.+++.+...+ ..+++|++|++++|.+++.....
T Consensus 422 ~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~ 500 (594)
T 2p1m_B 422 IGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLA 500 (594)
T ss_dssp HHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHH
T ss_pred hHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHH
Confidence 2334467889999999987 777777777765 8999999999999988877776 67999999999999998766654
Q ss_pred h-hCCCCCCEeecCCCCCcHHHHHHH-hcCccCCeeecCCC
Q 016017 344 L-AGLSSLKSLNLDARQITDTGLAAL-TSLTGLTHLDLFGA 382 (396)
Q Consensus 344 l-~~~~~L~~L~l~~~~l~~~~~~~l-~~~~~L~~l~l~~~ 382 (396)
+ ..+++|+.|++++|+++..+...+ ..+|.|+...+.++
T Consensus 501 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~ 541 (594)
T 2p1m_B 501 NASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDER 541 (594)
T ss_dssp TGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSS
T ss_pred HHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCC
Confidence 4 458999999999999988777766 56788876666655
No 39
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.95 E-value=6.4e-28 Score=231.10 Aligned_cols=136 Identities=21% Similarity=0.224 Sum_probs=103.7
Q ss_pred CCCcEEEccCCcCcHHHHHHhhCCCCCCEEeccCCCCCh-hHhHHHhCCCCccEEEcCCCCCCchhHHhhcCCCCCCEEe
Q 016017 252 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 330 (396)
Q Consensus 252 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 330 (396)
++++.++++.+.+....+..+..++.++.|++++|.... ..+..+..+++|++|++++|+++...+..+.++++|++|+
T Consensus 445 ~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~ 524 (635)
T 4g8a_A 445 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 524 (635)
T ss_dssp TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred cccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEE
Confidence 344444444444443334445566788888888775432 3445677788999999999999887778888899999999
Q ss_pred ccCcccChhhhHhhhCCCCCCEeecCCCCCcHHHHHHHhcC-ccCCeeecCCCccChH
Q 016017 331 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL-TGLTHLDLFGARITDS 387 (396)
Q Consensus 331 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~-~~L~~l~l~~~~l~~~ 387 (396)
+++|.++...+..+..+++|+.|++++|+++...+..+..+ ++|+.|++++|+++.+
T Consensus 525 Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~ 582 (635)
T 4g8a_A 525 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 582 (635)
T ss_dssp CTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred CCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence 99999888777778889999999999999988777777777 5799999999888753
No 40
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=7.1e-27 Score=221.90 Aligned_cols=230 Identities=17% Similarity=0.183 Sum_probs=172.2
Q ss_pred cCCCCcccEEecCCCCCcccccc-ccccCCCCccEEEeecCCCChhHHHh-ccCCCCCCEEEecC----------C-CCC
Q 016017 151 LKGLMKLESLNIKWCNCITDSDM-KPLSGLTNLKSLQISCSKVTDSGIAY-LKGLQKLTLLNLEG----------C-PVT 217 (396)
Q Consensus 151 l~~~~~L~~L~l~~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~----------~-~~~ 217 (396)
+..+++|++|++++|. ++.... ..+..+++|++|+++ +.+.+..... ...+++|+.|++++ + .+.
T Consensus 289 ~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~ 366 (592)
T 3ogk_B 289 FPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVS 366 (592)
T ss_dssp GGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCC
T ss_pred HhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccC
Confidence 4567799999999876 443333 446789999999999 4444444333 36789999999994 3 555
Q ss_pred hhhH-HHHhcCCCCCEEECCCCCCChHHHHhhhc-CCCCcEEEcc----CCcCcH-----HHHHHhhCCCCCCEEeccCC
Q 016017 218 AACL-DSLSALGSLFYLNLNRCQLSDDGCEKFSK-IGSLKVLNLG----FNEITD-----ECLVHLKGLTNLESLNLDSC 286 (396)
Q Consensus 218 ~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~-~~~L~~L~l~----~~~~~~-----~~~~~l~~~~~L~~L~l~~~ 286 (396)
.... .....+++|++|++..+.+++.....+.. +++|+.|+++ .+.+++ .....+.++++|++|+++.|
T Consensus 367 ~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~ 446 (592)
T 3ogk_B 367 QRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLR 446 (592)
T ss_dssp HHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECC
T ss_pred HHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecC
Confidence 5333 33456999999999888888877777765 9999999996 445553 23445678999999999765
Q ss_pred C--CChhHhHHHh-CCCCccEEEcCCCCCCchhHHh-hcCCCCCCEEeccCcccChhhhHhh-hCCCCCCEeecCCCCCc
Q 016017 287 G--IGDEGLVNLT-GLCNLKCLELSDTQVGSSGLRH-LSGLTNLESINLSFTGISDGSLRKL-AGLSSLKSLNLDARQIT 361 (396)
Q Consensus 287 ~--~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~l-~~~~~L~~L~l~~~~l~ 361 (396)
. +++.....+. .+++|+.|++++|++++.+... +..+++|++|++++|.+++.....+ ..+++|+.|++++|+++
T Consensus 447 ~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it 526 (592)
T 3ogk_B 447 QGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRAS 526 (592)
T ss_dssp GGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCC
T ss_pred CCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCC
Confidence 4 7776666665 4899999999999998866554 4789999999999999887655544 47999999999999999
Q ss_pred HHHHHHHh-cCccCCeeecCCC
Q 016017 362 DTGLAALT-SLTGLTHLDLFGA 382 (396)
Q Consensus 362 ~~~~~~l~-~~~~L~~l~l~~~ 382 (396)
+.+...+. .+|.+....+..+
T Consensus 527 ~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 527 MTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp TTCTTGGGGCCTTEEEEEECCC
T ss_pred HHHHHHHHHhCCCcEEEEecCc
Confidence 86555553 5676665555543
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=1e-27 Score=226.92 Aligned_cols=292 Identities=17% Similarity=0.092 Sum_probs=243.6
Q ss_pred CCCCCCeeeccCCcccChhHHHhhhCCCCCcEEeccCCccccHHHHHHHhCCCCCcEecccccccccCcccccCCCCccc
Q 016017 79 DCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158 (396)
Q Consensus 79 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 158 (396)
.+++++.++++++ .+.......+..+++|++|++++|. +....+..++.+++|++|++++|......+..+..+++|+
T Consensus 49 ~l~~l~~l~l~~~-~l~~lp~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 126 (597)
T 3oja_B 49 TLNNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 126 (597)
T ss_dssp GGCCCSEEEESSC-EESEECTHHHHHCCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred cCCCceEEEeeCC-CCCCcCHHHHccCCCCcEEECCCCC-CCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCC
Confidence 3578999999986 5676666778899999999999997 4555556788999999999999876655555689999999
Q ss_pred EEecCCCCCccccccccccCCCCccEEEeecCCCChhHHHhccCCCCCCEEEecCCCCChhhHHHHhcCCCCCEEECCCC
Q 016017 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238 (396)
Q Consensus 159 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 238 (396)
.|+++++ .++......+..+++|++|++++|.+....+..+..+++|+.|++++|.+... .+..+++|+.+++++|
T Consensus 127 ~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n 202 (597)
T 3oja_B 127 VLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYN 202 (597)
T ss_dssp EEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSS
T ss_pred EEEeeCC-CCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccC
Confidence 9999995 45555555678999999999999999988777889999999999999988764 2567899999999998
Q ss_pred CCChHHHHhhhcCCCCcEEEccCCcCcHHHHHHhhCCCCCCEEeccCCCCChhHhHHHhCCCCccEEEcCCCCCCchhHH
Q 016017 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 318 (396)
Q Consensus 239 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 318 (396)
.+.. +...++|+.|++++|.+..... ...++|+.|++++|.+.+ +..+..+++|+.|++++|.+++..+.
T Consensus 203 ~l~~-----l~~~~~L~~L~ls~n~l~~~~~---~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~ 272 (597)
T 3oja_B 203 LLST-----LAIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYH 272 (597)
T ss_dssp CCSE-----EECCTTCSEEECCSSCCCEEEC---SCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESG
T ss_pred cccc-----ccCCchhheeeccCCccccccc---ccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHH
Confidence 7753 3456789999999998765322 234799999999999876 35678899999999999999988888
Q ss_pred hhcCCCCCCEEeccCcccChhhhHhhhCCCCCCEeecCCCCCcHHHHHHHhcCccCCeeecCCCccChHH
Q 016017 319 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 388 (396)
Q Consensus 319 ~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~l~~~~ 388 (396)
.+..+++|+.|++++|.+++. +..+..+++|+.|++++|.+... +..+..+++|+.|++++|+++..+
T Consensus 273 ~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~Ls~N~l~~i-~~~~~~l~~L~~L~L~~N~l~~~~ 340 (597)
T 3oja_B 273 PFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLLHV-ERNQPQFDRLENLYLDHNSIVTLK 340 (597)
T ss_dssp GGTTCSSCCEEECTTSCCCEE-ECSSSCCTTCCEEECCSSCCCCC-GGGHHHHTTCSEEECCSSCCCCCC
T ss_pred HhcCccCCCEEECCCCCCCCC-CcccccCCCCcEEECCCCCCCcc-CcccccCCCCCEEECCCCCCCCcC
Confidence 889999999999999998873 44556789999999999999864 456678899999999999998754
No 42
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.95 E-value=2.8e-27 Score=215.82 Aligned_cols=293 Identities=19% Similarity=0.146 Sum_probs=166.1
Q ss_pred ceeEeccCCCCCCCchHHHHHHhcCCCccEEEeecCCCChHHHHHhhCCCCCCeeeccCCcccChhHHHhhhCCCCCcEE
Q 016017 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSL 111 (396)
Q Consensus 32 ~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L 111 (396)
.++.+++.++. +... . -...+++|++|+++++++++. .++.+++|++|+++++ .+... .++++++|++|
T Consensus 43 ~L~~L~Ls~n~-l~~~--~-~l~~l~~L~~L~Ls~n~l~~~---~~~~l~~L~~L~Ls~N-~l~~~---~~~~l~~L~~L 111 (457)
T 3bz5_A 43 TLTSLDCHNSS-ITDM--T-GIEKLTGLTKLICTSNNITTL---DLSQNTNLTYLACDSN-KLTNL---DVTPLTKLTYL 111 (457)
T ss_dssp TCCEEECCSSC-CCCC--T-TGGGCTTCSEEECCSSCCSCC---CCTTCTTCSEEECCSS-CCSCC---CCTTCTTCCEE
T ss_pred CCCEEEccCCC-cccC--h-hhcccCCCCEEEccCCcCCeE---ccccCCCCCEEECcCC-CCcee---ecCCCCcCCEE
Confidence 46666666653 1111 1 124566777777777766653 1566677777777665 34443 25666777777
Q ss_pred eccCCccccHHHHHHHhCCCCCcEecccccccccCcccccCCCCcccEEecCCCCCccccccccccCCCCccEEEeecCC
Q 016017 112 SFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 191 (396)
Q Consensus 112 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 191 (396)
++++|.... . .++.+++|++|++++|..... .+..+++|+.|+++++..++.. .+..+++|++|++++|.
T Consensus 112 ~L~~N~l~~-l---~~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~ls~n~ 181 (457)
T 3bz5_A 112 NCDTNKLTK-L---DVSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL---DVTPQTQLTTLDCSFNK 181 (457)
T ss_dssp ECCSSCCSC-C---CCTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC---CCTTCTTCCEEECCSSC
T ss_pred ECCCCcCCe-e---cCCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc---ccccCCcCCEEECCCCc
Confidence 777765322 2 156667777777776543321 2566667777777665444332 35566777777777776
Q ss_pred CChhHHHhccCCCCCCEEEecCCCCChhhHHHHhcCCCCCEEECCCCCCChHHHHhhhcCCCCcEEEccCCcCcHHHHHH
Q 016017 192 VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 271 (396)
Q Consensus 192 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 271 (396)
++... +..+++|+.|++++|.+... .+..+++|+.|++++|.+.... +..+++|+.|++++|.+.+..
T Consensus 182 l~~l~---l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~ip---~~~l~~L~~L~l~~N~l~~~~--- 249 (457)
T 3bz5_A 182 ITELD---VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEID---VTPLTQLTYFDCSVNPLTELD--- 249 (457)
T ss_dssp CCCCC---CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCC---
T ss_pred cceec---cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccccC---ccccCCCCEEEeeCCcCCCcC---
Confidence 66532 56666777777777766553 2556677777777777665531 556667777777776665432
Q ss_pred hhCCCCCCEEecc----------CCCCChhHhHHHhCCCCccEEEcCCCCCCchhHH--------hhcCCCCCCEEeccC
Q 016017 272 LKGLTNLESLNLD----------SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR--------HLSGLTNLESINLSF 333 (396)
Q Consensus 272 l~~~~~L~~L~l~----------~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--------~l~~~~~L~~L~l~~ 333 (396)
+..+++|+.|++. +|...+..+ +..+++|+.|++++|...+..+. .+..+++|++|++++
T Consensus 250 ~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~ 327 (457)
T 3bz5_A 250 VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNN 327 (457)
T ss_dssp CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTT
T ss_pred HHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCC
Confidence 2344444444333 332222111 23456666666666643221110 134556666666666
Q ss_pred cccChhhhHhhhCCCCCCEeecCCCCCcH
Q 016017 334 TGISDGSLRKLAGLSSLKSLNLDARQITD 362 (396)
Q Consensus 334 ~~~~~~~~~~l~~~~~L~~L~l~~~~l~~ 362 (396)
|.+++. .+..+++|+.|++++|++.+
T Consensus 328 N~l~~l---~l~~l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 328 TELTEL---DVSHNTKLKSLSCVNAHIQD 353 (457)
T ss_dssp CCCSCC---CCTTCTTCSEEECCSSCCCB
T ss_pred Cccccc---ccccCCcCcEEECCCCCCCC
Confidence 666652 25566666666666666654
No 43
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.94 E-value=1.4e-28 Score=213.87 Aligned_cols=249 Identities=17% Similarity=0.152 Sum_probs=171.6
Q ss_pred CCcEeccccccccc--CcccccCCCCcccEEecCCCCCccccccccccCCCCccEEEeecCCCChhHHHhccCCCCCCEE
Q 016017 132 NLVKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL 209 (396)
Q Consensus 132 ~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 209 (396)
+++.|+++++.... ..+..+..+++|+.|++++++.+.+..+..+..+++|++|++++|.++...+..+..+++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 34444444433322 2333455555555555553233444455566677777777777777665555666777777777
Q ss_pred EecCCCCChhhHHHHhcCCCCCEEECCCCCCChHHHHhhhcCC-CCcEEEccCCcCcHHHHHHhhCCCCCCEEeccCCCC
Q 016017 210 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG-SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 288 (396)
Q Consensus 210 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 288 (396)
++++|.+....+..+..+++|++|++++|.+.+..+..+..++ +|+.|++++|.+.+..+..+..+. |+.|++++|.+
T Consensus 131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l 209 (313)
T 1ogq_A 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNML 209 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEE
T ss_pred eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcc
Confidence 7777766654556667777777777777777655556666766 788888887777655555666665 88888888877
Q ss_pred ChhHhHHHhCCCCccEEEcCCCCCCchhHHhhcCCCCCCEEeccCcccChhhhHhhhCCCCCCEeecCCCCCcHHHHHHH
Q 016017 289 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 368 (396)
Q Consensus 289 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l 368 (396)
.+..+..+..+++|+.|++++|.++..... +..+++|++|++++|.+++..+..+..+++|+.|++++|++++..+..
T Consensus 210 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~- 287 (313)
T 1ogq_A 210 EGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG- 287 (313)
T ss_dssp EECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-
T ss_pred cCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-
Confidence 666666777788888888888877654333 667788888888888888777777888888888888888887654443
Q ss_pred hcCccCCeeecCCCc
Q 016017 369 TSLTGLTHLDLFGAR 383 (396)
Q Consensus 369 ~~~~~L~~l~l~~~~ 383 (396)
..+++|+.+++.+|+
T Consensus 288 ~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 288 GNLQRFDVSAYANNK 302 (313)
T ss_dssp TTGGGSCGGGTCSSS
T ss_pred ccccccChHHhcCCC
Confidence 677888888888885
No 44
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.94 E-value=1.7e-26 Score=210.71 Aligned_cols=298 Identities=20% Similarity=0.153 Sum_probs=234.3
Q ss_pred cCCCccEEEeecCCCChHHHHHhhCCCCCCeeeccCCcccChhHHHhhhCCCCCcEEeccCCccccHHHHHHHhCCCCCc
Q 016017 55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134 (396)
Q Consensus 55 ~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 134 (396)
.++++++|+++++.+++. + .+..+++|++|+++++ .+... .++.+++|++|++++|.... . .++.+++|+
T Consensus 40 ~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n-~l~~~---~~~~l~~L~~L~Ls~N~l~~-~---~~~~l~~L~ 109 (457)
T 3bz5_A 40 QLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSN-NITTL---DLSQNTNLTYLACDSNKLTN-L---DVTPLTKLT 109 (457)
T ss_dssp HHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSS-CCSCC---CCTTCTTCSEEECCSSCCSC-C---CCTTCTTCC
T ss_pred HcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCC-cCCeE---ccccCCCCCEEECcCCCCce-e---ecCCCCcCC
Confidence 468999999999999864 3 6889999999999997 56654 27889999999999998533 2 278899999
Q ss_pred EecccccccccCcccccCCCCcccEEecCCCCCccccccccccCCCCccEEEeecCCCChhHHHhccCCCCCCEEEecCC
Q 016017 135 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 214 (396)
Q Consensus 135 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 214 (396)
+|++++|.... . .+..+++|+.|+++++. ++.. .+..+++|++|++++|...... .+..+++|+.|++++|
T Consensus 110 ~L~L~~N~l~~-l--~~~~l~~L~~L~l~~N~-l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n 180 (457)
T 3bz5_A 110 YLNCDTNKLTK-L--DVSQNPLLTYLNCARNT-LTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFN 180 (457)
T ss_dssp EEECCSSCCSC-C--CCTTCTTCCEEECTTSC-CSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSS
T ss_pred EEECCCCcCCe-e--cCCCCCcCCEEECCCCc-ccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCC
Confidence 99999985443 2 27889999999999854 4433 3778999999999999533332 4778899999999999
Q ss_pred CCChhhHHHHhcCCCCCEEECCCCCCChHHHHhhhcCCCCcEEEccCCcCcHHHHHHhhCCCCCCEEeccCCCCChhHhH
Q 016017 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294 (396)
Q Consensus 215 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 294 (396)
.+... + +..+++|+.|++++|.+... .+..+++|+.|++++|.+.+. + +..+++|+.|++++|.+.+..
T Consensus 181 ~l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~i-p--~~~l~~L~~L~l~~N~l~~~~-- 249 (457)
T 3bz5_A 181 KITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEI-D--VTPLTQLTYFDCSVNPLTELD-- 249 (457)
T ss_dssp CCCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCCC--
T ss_pred cccee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCccccc-C--ccccCCCCEEEeeCCcCCCcC--
Confidence 88774 2 67889999999999988765 377899999999999998874 3 788999999999999987654
Q ss_pred HHhCCCCccEEEcCCCCCCchhH--------HhhcCCCCCCEEeccCcccChhhhH--------hhhCCCCCCEeecCCC
Q 016017 295 NLTGLCNLKCLELSDTQVGSSGL--------RHLSGLTNLESINLSFTGISDGSLR--------KLAGLSSLKSLNLDAR 358 (396)
Q Consensus 295 ~~~~~~~L~~L~l~~~~~~~~~~--------~~l~~~~~L~~L~l~~~~~~~~~~~--------~l~~~~~L~~L~l~~~ 358 (396)
+..+++|+.|+++++++..... ..+..|++|+.|++++|...+..+. .+..+++|+.|++++|
T Consensus 250 -~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N 328 (457)
T 3bz5_A 250 -VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNT 328 (457)
T ss_dssp -CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTC
T ss_pred -HHHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCC
Confidence 3455666666555554432111 1135789999999999964433222 2456789999999999
Q ss_pred CCcHHHHHHHhcCccCCeeecCCCccCh
Q 016017 359 QITDTGLAALTSLTGLTHLDLFGARITD 386 (396)
Q Consensus 359 ~l~~~~~~~l~~~~~L~~l~l~~~~l~~ 386 (396)
++++. .+..+++|+.|++++|++++
T Consensus 329 ~l~~l---~l~~l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 329 ELTEL---DVSHNTKLKSLSCVNAHIQD 353 (457)
T ss_dssp CCSCC---CCTTCTTCSEEECCSSCCCB
T ss_pred ccccc---ccccCCcCcEEECCCCCCCC
Confidence 99985 38899999999999999986
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.94 E-value=5e-27 Score=206.20 Aligned_cols=289 Identities=19% Similarity=0.190 Sum_probs=170.7
Q ss_pred CccEEEeecCCCChHHHHHhhCCCCCCeeeccCCcccChhHHHhhhCCCCCcEEeccCCccccHHHHHHHhCCCCCcEec
Q 016017 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLD 137 (396)
Q Consensus 58 ~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 137 (396)
+++.++++++.++. .+.. -.+++++|+++++ .+.......++++++|++|++++|.. ....+..+..+++|++|+
T Consensus 32 ~l~~l~~~~~~l~~-lp~~--~~~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~ 106 (330)
T 1xku_A 32 HLRVVQCSDLGLEK-VPKD--LPPDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINNKI-SKISPGAFAPLVKLERLY 106 (330)
T ss_dssp ETTEEECTTSCCCS-CCCS--CCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSCC-CCBCTTTTTTCTTCCEEE
T ss_pred CCeEEEecCCCccc-cCcc--CCCCCeEEECCCC-cCCEeChhhhccCCCCCEEECCCCcC-CeeCHHHhcCCCCCCEEE
Confidence 55666666555442 1111 1245566666554 34443333455555555555555542 222233344444455554
Q ss_pred ccccccccCcccccCCCCcccEEecCCCCCccccccccccCCCCccEEEeecCCCChhHHHhccCCCCCCEEEecCCCCC
Q 016017 138 LERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217 (396)
Q Consensus 138 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 217 (396)
+++|. ++.. +..+ .++|++|++++|.+.......+..+++|+.|+++++.+.
T Consensus 107 Ls~n~-------------------------l~~l-~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 158 (330)
T 1xku_A 107 LSKNQ-------------------------LKEL-PEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLK 158 (330)
T ss_dssp CCSSC-------------------------CSBC-CSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCC
T ss_pred CCCCc-------------------------CCcc-Chhh--cccccEEECCCCcccccCHhHhcCCccccEEECCCCcCC
Confidence 44432 2211 1111 156666666666666655556666677777777766554
Q ss_pred h--hhHHHHhcCCCCCEEECCCCCCChHHHHhhhcCCCCcEEEccCCcCcHHHHHHhhCCCCCCEEeccCCCCChhHhHH
Q 016017 218 A--ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295 (396)
Q Consensus 218 ~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 295 (396)
. ..+..+..+++|+.|++++|.+..... . ..++|+.|++++|.+....+..+..+++|+.|++++|.+.+..+..
T Consensus 159 ~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~-~--~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 235 (330)
T 1xku_A 159 SSGIENGAFQGMKKLSYIRIADTNITTIPQ-G--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGS 235 (330)
T ss_dssp GGGBCTTGGGGCTTCCEEECCSSCCCSCCS-S--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTT
T ss_pred ccCcChhhccCCCCcCEEECCCCccccCCc-c--ccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhh
Confidence 2 233455667777777777766553221 1 1267777888777776655556777788888888888777665556
Q ss_pred HhCCCCccEEEcCCCCCCchhHHhhcCCCCCCEEeccCcccChhhhHhhhC------CCCCCEeecCCCCCcH--HHHHH
Q 016017 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG------LSSLKSLNLDARQITD--TGLAA 367 (396)
Q Consensus 296 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~------~~~L~~L~l~~~~l~~--~~~~~ 367 (396)
+..+++|++|++++|.++. .+..+..+++|++|++++|.+++.....+.. .+.|+.+++.+|++.. ..+..
T Consensus 236 ~~~l~~L~~L~L~~N~l~~-lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~ 314 (330)
T 1xku_A 236 LANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPST 314 (330)
T ss_dssp GGGSTTCCEEECCSSCCSS-CCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGG
T ss_pred ccCCCCCCEEECCCCcCcc-CChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccc
Confidence 7777888888888887763 2344667788888888888777655555432 3678888888887753 33456
Q ss_pred HhcCccCCeeecCCCc
Q 016017 368 LTSLTGLTHLDLFGAR 383 (396)
Q Consensus 368 l~~~~~L~~l~l~~~~ 383 (396)
+..+++++.+++++|+
T Consensus 315 f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 315 FRCVYVRAAVQLGNYK 330 (330)
T ss_dssp GTTCCCGGGEEC----
T ss_pred cccccceeEEEecccC
Confidence 7777888888888874
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.94 E-value=1e-26 Score=204.26 Aligned_cols=271 Identities=15% Similarity=0.132 Sum_probs=168.7
Q ss_pred CCCccEEEeecCCCChHHHHHhhCCCCCCeeeccCCcccChhHHHhhhCCCCCcEEeccCCccccHHHHHHHhCCCCCcE
Q 016017 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135 (396)
Q Consensus 56 ~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 135 (396)
+++++.|+++++.+++.....+.++++|++|+++++ .+....+..++++++|++|++++|.. ... +.. ..++|++
T Consensus 51 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~l-~~~--~~~~L~~ 125 (330)
T 1xku_A 51 PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN-KISKISPGAFAPLVKLERLYLSKNQL-KEL-PEK--MPKTLQE 125 (330)
T ss_dssp CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSCC-SBC-CSS--CCTTCCE
T ss_pred CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCC-cCCeeCHHHhcCCCCCCEEECCCCcC-Ccc-Chh--hcccccE
Confidence 479999999999998777778899999999999987 67776677889999999999999874 211 111 1256677
Q ss_pred ecccccccccCcccccCCCCcccEEecCCCCCcc-ccccccccCCCCccEEEeecCCCChhHHHhccCCCCCCEEEecCC
Q 016017 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCIT-DSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 214 (396)
Q Consensus 136 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 214 (396)
|++++|.........+..+++|+.|+++++.... +.....+..+++|++|++++|.++...
T Consensus 126 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~------------------ 187 (330)
T 1xku_A 126 LRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIP------------------ 187 (330)
T ss_dssp EECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCC------------------
T ss_pred EECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCC------------------
Confidence 7766654333333334555555555555532211 122233444455555555544443211
Q ss_pred CCChhhHHHHhcCCCCCEEECCCCCCChHHHHhhhcCCCCcEEEccCCcCcHHHHHHhhCCCCCCEEeccCCCCChhHhH
Q 016017 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294 (396)
Q Consensus 215 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 294 (396)
.. ..++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.. .+.
T Consensus 188 -------~~--~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-lp~ 257 (330)
T 1xku_A 188 -------QG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPG 257 (330)
T ss_dssp -------SS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSS-CCT
T ss_pred -------cc--ccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCcc-CCh
Confidence 11 12556666666665555444555666666666666666554444455666777777777776652 334
Q ss_pred HHhCCCCccEEEcCCCCCCchhHHhhc------CCCCCCEEeccCcccCh--hhhHhhhCCCCCCEeecCCCC
Q 016017 295 NLTGLCNLKCLELSDTQVGSSGLRHLS------GLTNLESINLSFTGISD--GSLRKLAGLSSLKSLNLDARQ 359 (396)
Q Consensus 295 ~~~~~~~L~~L~l~~~~~~~~~~~~l~------~~~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~ 359 (396)
.+..+++|++|++++|+++......+. ..+.++.|++.+|.+.. ..+..+..+++++.+++++|+
T Consensus 258 ~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 258 GLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp TTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred hhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 456667777777777777665544442 24778888888887754 334566678889999988874
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.94 E-value=3.3e-27 Score=207.44 Aligned_cols=288 Identities=20% Similarity=0.217 Sum_probs=161.7
Q ss_pred CccEEEeecCCCChHHHHHhhCCCCCCeeeccCCcccChhHHHhhhCCCCCcEEeccCCccccHHHHHHHhCCCCCcEec
Q 016017 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLD 137 (396)
Q Consensus 58 ~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 137 (396)
+++.++++++.++. .+..+ .++|++|+++++ .+....+..+.++++|++|++++|.. ....+..+..+++|++|+
T Consensus 34 ~l~~l~~~~~~l~~-ip~~~--~~~l~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~ 108 (332)
T 2ft3_A 34 HLRVVQCSDLGLKA-VPKEI--SPDTTLLDLQNN-DISELRKDDFKGLQHLYALVLVNNKI-SKIHEKAFSPLRKLQKLY 108 (332)
T ss_dssp ETTEEECCSSCCSS-CCSCC--CTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCC-CEECGGGSTTCTTCCEEE
T ss_pred cCCEEECCCCCccc-cCCCC--CCCCeEEECCCC-cCCccCHhHhhCCCCCcEEECCCCcc-CccCHhHhhCcCCCCEEE
Confidence 45666666555542 12111 245666666554 34444344455555666666655542 222233445555555555
Q ss_pred ccccccccCcccccCCCCcccEEecCCCCCccccccccccCCCCccEEEeecCCCChhHHHhccCCCCCCEEEecCCCCC
Q 016017 138 LERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217 (396)
Q Consensus 138 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 217 (396)
+++|... ..+..+. ++|++|++++|.+.......+..+++|+.|+++++.+.
T Consensus 109 L~~n~l~-~l~~~~~---------------------------~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~ 160 (332)
T 2ft3_A 109 ISKNHLV-EIPPNLP---------------------------SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE 160 (332)
T ss_dssp CCSSCCC-SCCSSCC---------------------------TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCB
T ss_pred CCCCcCC-ccCcccc---------------------------ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccc
Confidence 5554321 1111111 45555555555554443344455555555555555443
Q ss_pred h--hhHHHHhcCCCCCEEECCCCCCChHHHHhhhcCCCCcEEEccCCcCcHHHHHHhhCCCCCCEEeccCCCCChhHhHH
Q 016017 218 A--ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295 (396)
Q Consensus 218 ~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 295 (396)
. ..+..+..+ +|+.|++++|.+..... . -.++|+.|++++|.+....+..+..+++|+.|++++|.+....+..
T Consensus 161 ~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~-~--~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~ 236 (332)
T 2ft3_A 161 NSGFEPGAFDGL-KLNYLRISEAKLTGIPK-D--LPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGS 236 (332)
T ss_dssp GGGSCTTSSCSC-CCSCCBCCSSBCSSCCS-S--SCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTG
T ss_pred cCCCCcccccCC-ccCEEECcCCCCCccCc-c--ccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhH
Confidence 2 112223333 56666666655443211 1 1246777777777666554455667777777888777776655556
Q ss_pred HhCCCCccEEEcCCCCCCchhHHhhcCCCCCCEEeccCcccChhhhHhhhC------CCCCCEeecCCCCCc--HHHHHH
Q 016017 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG------LSSLKSLNLDARQIT--DTGLAA 367 (396)
Q Consensus 296 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~------~~~L~~L~l~~~~l~--~~~~~~ 367 (396)
+..+++|+.|++++|.++.. +..+..+++|++|++++|.+++.....+.. .+.|+.|++.+|++. ...+..
T Consensus 237 ~~~l~~L~~L~L~~N~l~~l-p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~ 315 (332)
T 2ft3_A 237 LSFLPTLRELHLDNNKLSRV-PAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPAT 315 (332)
T ss_dssp GGGCTTCCEEECCSSCCCBC-CTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGG
T ss_pred hhCCCCCCEEECCCCcCeec-ChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCccc
Confidence 67777888888888877632 334667788888888888777655555543 366888888888776 444566
Q ss_pred HhcCccCCeeecCCCc
Q 016017 368 LTSLTGLTHLDLFGAR 383 (396)
Q Consensus 368 l~~~~~L~~l~l~~~~ 383 (396)
+..+++|+.+++++|+
T Consensus 316 ~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 316 FRCVTDRLAIQFGNYK 331 (332)
T ss_dssp GTTBCCSTTEEC----
T ss_pred ccccchhhhhhccccc
Confidence 7778888888888874
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.93 E-value=7.5e-27 Score=205.19 Aligned_cols=288 Identities=18% Similarity=0.154 Sum_probs=179.9
Q ss_pred CceeEeccCCCC--CCCchHHHHHHhcCCCccEEEeecCCCChHHHHHhhCCCCCCeeeccCCcccChhHHHhhhCCCCC
Q 016017 31 CALQDLCLGQYP--GVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNL 108 (396)
Q Consensus 31 ~~l~~l~l~~~~--~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L 108 (396)
|.++.+.+.++. .+.. ..+++++.|+++++.+++..+..+.++++|++|+++++ .+....+..++++++|
T Consensus 33 c~l~~l~~~~~~l~~ip~-------~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L 104 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPK-------EISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNN-KISKIHEKAFSPLRKL 104 (332)
T ss_dssp EETTEEECCSSCCSSCCS-------CCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECGGGSTTCTTC
T ss_pred ccCCEEECCCCCccccCC-------CCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCC-ccCccCHhHhhCcCCC
Confidence 356777766653 1111 12479999999999998777778999999999999997 6777777889999999
Q ss_pred cEEeccCCccccHHHHHHHhCCCCCcEecccccccccCcccccCCCCcccEEecCCCCCcc-ccccccccCCCCccEEEe
Q 016017 109 TSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCIT-DSDMKPLSGLTNLKSLQI 187 (396)
Q Consensus 109 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~l~~~~~L~~L~l 187 (396)
++|++++|... .. +.. ..++|++|++++|.........+..+++|+.|+++++.... +..+..+..+ +|++|++
T Consensus 105 ~~L~L~~n~l~-~l-~~~--~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l 179 (332)
T 2ft3_A 105 QKLYISKNHLV-EI-PPN--LPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRI 179 (332)
T ss_dssp CEEECCSSCCC-SC-CSS--CCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBC
T ss_pred CEEECCCCcCC-cc-Ccc--ccccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEEC
Confidence 99999998743 22 111 23799999999976544444446777777777777643321 1233344444 6666666
Q ss_pred ecCCCChhHHHhccCCCCCCEEEecCCCCChhhHHHHhcCCCCCEEECCCCCCChHHHHhhhcCCCCcEEEccCCcCcHH
Q 016017 188 SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 267 (396)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 267 (396)
++|.++.... . ..+ +|+.|++++|.+....+..+..+++|+.|++++|.+...
T Consensus 180 ~~n~l~~l~~-~--~~~------------------------~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~ 232 (332)
T 2ft3_A 180 SEAKLTGIPK-D--LPE------------------------TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMI 232 (332)
T ss_dssp CSSBCSSCCS-S--SCS------------------------SCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCC
T ss_pred cCCCCCccCc-c--ccC------------------------CCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcC
Confidence 6665553211 1 113 444444544444433333445555555555555555444
Q ss_pred HHHHhhCCCCCCEEeccCCCCChhHhHHHhCCCCccEEEcCCCCCCchhHHhhcC------CCCCCEEeccCcccC--hh
Q 016017 268 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG------LTNLESINLSFTGIS--DG 339 (396)
Q Consensus 268 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~------~~~L~~L~l~~~~~~--~~ 339 (396)
.+..+..+++|+.|++++|.+.. .+..+..+++|+.|++++|.++......+.. .+.|+.|++.+|.+. +.
T Consensus 233 ~~~~~~~l~~L~~L~L~~N~l~~-lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~ 311 (332)
T 2ft3_A 233 ENGSLSFLPTLRELHLDNNKLSR-VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEV 311 (332)
T ss_dssp CTTGGGGCTTCCEEECCSSCCCB-CCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGS
T ss_pred ChhHhhCCCCCCEEECCCCcCee-cChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCccccccc
Confidence 33345556666666666666552 2334556667777777777666554444422 366788888888766 44
Q ss_pred hhHhhhCCCCCCEeecCCCC
Q 016017 340 SLRKLAGLSSLKSLNLDARQ 359 (396)
Q Consensus 340 ~~~~l~~~~~L~~L~l~~~~ 359 (396)
.+..+..+++|+.+++++|+
T Consensus 312 ~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 312 QPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CGGGGTTBCCSTTEEC----
T ss_pred Ccccccccchhhhhhccccc
Confidence 45566677888888887764
No 49
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.93 E-value=2.7e-27 Score=205.82 Aligned_cols=249 Identities=18% Similarity=0.188 Sum_probs=148.1
Q ss_pred CCCCeeeccCCcccCh--hHHHhhhCCCCCcEEeccC-CccccHHHHHHHhCCCCCcEecccccccccCcccccCCCCcc
Q 016017 81 SNLQSLDFNFCIQISD--GGLEHLRGLSNLTSLSFRR-NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 157 (396)
Q Consensus 81 ~~L~~L~l~~~~~~~~--~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 157 (396)
.++++|+++++ .+.+ ..+..++++++|++|++++ +. +....+..+..+++|++|++++|......
T Consensus 50 ~~l~~L~L~~~-~l~~~~~~~~~l~~l~~L~~L~L~~~n~-l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~---------- 117 (313)
T 1ogq_A 50 YRVNNLDLSGL-NLPKPYPIPSSLANLPYLNFLYIGGINN-LVGPIPPAIAKLTQLHYLYITHTNVSGAI---------- 117 (313)
T ss_dssp CCEEEEEEECC-CCSSCEECCGGGGGCTTCSEEEEEEETT-EESCCCGGGGGCTTCSEEEEEEECCEEEC----------
T ss_pred ceEEEEECCCC-CccCCcccChhHhCCCCCCeeeCCCCCc-ccccCChhHhcCCCCCEEECcCCeeCCcC----------
Confidence 45666666664 3444 3445566666666666663 33 22223344555555565555554433233
Q ss_pred cEEecCCCCCccccccccccCCCCccEEEeecCCCChhHHHhccCCCCCCEEEecCCCCChhhHHHHhcCC-CCCEEECC
Q 016017 158 ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG-SLFYLNLN 236 (396)
Q Consensus 158 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~ 236 (396)
+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+....+..+..++ +|+.|+++
T Consensus 118 ---------------p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~ 182 (313)
T 1ogq_A 118 ---------------PDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTIS 182 (313)
T ss_dssp ---------------CGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECC
T ss_pred ---------------CHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECc
Confidence 33444445555555555544433344445555555555555555433344455554 56666666
Q ss_pred CCCCChHHHHhhhcCCCCcEEEccCCcCcHHHHHHhhCCCCCCEEeccCCCCChhHhHHHhCCCCccEEEcCCCCCCchh
Q 016017 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 316 (396)
Q Consensus 237 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 316 (396)
+|.+....+..+..++ |+.|++++|.+.+..+..+..+++|+.|++++|.+....+. +..+++|++|++++|.+++..
T Consensus 183 ~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~ 260 (313)
T 1ogq_A 183 RNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTL 260 (313)
T ss_dssp SSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECC
T ss_pred CCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcC
Confidence 6655444444555554 67777766666554455566677777777777766543332 556678888888888877666
Q ss_pred HHhhcCCCCCCEEeccCcccChhhhHhhhCCCCCCEeecCCCC
Q 016017 317 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 359 (396)
Q Consensus 317 ~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 359 (396)
+..+..+++|++|++++|.+++..+.. ..+++|+.+++.+|+
T Consensus 261 p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 261 PQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp CGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred ChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 667777888888888888777655554 667888888888876
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.92 E-value=1.2e-25 Score=199.21 Aligned_cols=254 Identities=16% Similarity=0.162 Sum_probs=128.4
Q ss_pred CCCcEEeccCCccccHHHHHHHhCCCCCcEecccccccccCcccccCCCCcccEEecCCCCCccccccccccCCCCccEE
Q 016017 106 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185 (396)
Q Consensus 106 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L 185 (396)
++|++|++++|.. .......+..+++|++|++++|......+..+..+++|++|+++++ .++......+..+++|++|
T Consensus 52 ~~L~~L~l~~n~i-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L 129 (353)
T 2z80_A 52 EAVKSLDLSNNRI-TYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN-YLSNLSSSWFKPLSSLTFL 129 (353)
T ss_dssp TTCCEEECTTSCC-CEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSSCCHHHHTTCTTCSEE
T ss_pred ccCcEEECCCCcC-cccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC-cCCcCCHhHhCCCccCCEE
Confidence 4677777777763 3333335666777777777766443333344566666666666663 3333333345566666666
Q ss_pred EeecCCCChhHH-HhccCCCCCCEEEecCC-CCChhhHHHHhcCCCCCEEECCCCCCChHHHHhhhcCCCCcEEEccCCc
Q 016017 186 QISCSKVTDSGI-AYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE 263 (396)
Q Consensus 186 ~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 263 (396)
++++|.+..... ..+..+++|+.|++++| .+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.
T Consensus 130 ~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 209 (353)
T 2z80_A 130 NLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ 209 (353)
T ss_dssp ECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSC
T ss_pred ECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCc
Confidence 666665554332 24555666666666665 2333333344555556666665555554444455555555555555555
Q ss_pred CcHHHHHHhhCCCCCCEEeccCCCCChhHhHHH---hCCCCccEEEcCCCCCCchh----HHhhcCCCCCCEEeccCccc
Q 016017 264 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL---TGLCNLKCLELSDTQVGSSG----LRHLSGLTNLESINLSFTGI 336 (396)
Q Consensus 264 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~----~~~l~~~~~L~~L~l~~~~~ 336 (396)
+.......+..+++|+.|++++|.+.+..+..+ .....++.+++.++.+++.. +..+..+++|++|++++|.+
T Consensus 210 l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l 289 (353)
T 2z80_A 210 HILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQL 289 (353)
T ss_dssp STTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCC
T ss_pred cccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCC
Confidence 544333333445555555555555443221111 12334445555554444322 12234445555555555544
Q ss_pred ChhhhHhhhCCCCCCEeecCCCCCc
Q 016017 337 SDGSLRKLAGLSSLKSLNLDARQIT 361 (396)
Q Consensus 337 ~~~~~~~l~~~~~L~~L~l~~~~l~ 361 (396)
+......+..+++|+.|++++|++.
T Consensus 290 ~~i~~~~~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 290 KSVPDGIFDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccCHHHHhcCCCCCEEEeeCCCcc
Confidence 4322222344455555555555444
No 51
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.92 E-value=1.3e-24 Score=191.50 Aligned_cols=293 Identities=18% Similarity=0.227 Sum_probs=173.4
Q ss_pred CCcHHHHHHHHHHhHhccccCchhhcccccCceeEeccCCCCCCCchHHHHHHhcCCCccEEEeecCCCChHHHHHhhCC
Q 016017 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDC 80 (396)
Q Consensus 1 ~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~ 80 (396)
.+|+|+...+|..|..+. +..+..++..|...... ...++.++++++.+.+.. +..+
T Consensus 11 ~LP~eil~~If~~L~~~d-------------------~~~~~~vc~~W~~~~~~-~~~~~~l~l~~~~~~~~~---~~~~ 67 (336)
T 2ast_B 11 SLPDELLLGIFSCLCLPE-------------------LLKVSGVCKRWYRLASD-ESLWQTLDLTGKNLHPDV---TGRL 67 (336)
T ss_dssp SSCHHHHHHHHTTSCHHH-------------------HHHTTSSCHHHHHHHTC-STTSSEEECTTCBCCHHH---HHHH
T ss_pred hCCHHHHHHHHHhCCHHH-------------------HHHHHHHHHHHHHHhcC-chhheeeccccccCCHHH---HHhh
Confidence 479999999997653221 22356778889887763 667999999998887433 4444
Q ss_pred --CCCCeeeccCCcccChhHHHhhhCCCCCcEEeccCCccccHHHHHHHhCCCCCcEecccccccccCcccccCCCCccc
Q 016017 81 --SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158 (396)
Q Consensus 81 --~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 158 (396)
++++.|+++++ .+.+..+ .+..+++|++|++++|.......+..+..+++|++|++++|......+..+..+++|+
T Consensus 68 ~~~~l~~L~l~~n-~l~~~~~-~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~ 145 (336)
T 2ast_B 68 LSQGVIAFRCPRS-FMDQPLA-EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLV 145 (336)
T ss_dssp HHTTCSEEECTTC-EECSCCC-SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCS
T ss_pred hhccceEEEcCCc-cccccch-hhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCC
Confidence 78999999886 4544433 3567899999999999743333566778888999998888753333333444555555
Q ss_pred EEecCCCCCccccccccccCCCCccEEEeecCCCChh-HHHhccCCCCCCEEEecCC-CCChh-hHHHHhcCC-CCCEEE
Q 016017 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS-GIAYLKGLQKLTLLNLEGC-PVTAA-CLDSLSALG-SLFYLN 234 (396)
Q Consensus 159 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~-~L~~L~ 234 (396)
+|++++|.. +++. .+..+..+++|+.|++++| .+... .+..+..++ +|++|+
T Consensus 146 ~L~L~~~~~------------------------l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~ 201 (336)
T 2ast_B 146 RLNLSGCSG------------------------FSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLN 201 (336)
T ss_dssp EEECTTCBS------------------------CCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEE
T ss_pred EEECCCCCC------------------------CCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEE
Confidence 555555433 3332 2222344455555555555 44432 233344555 555555
Q ss_pred CCCC--CCC-hHHHHhhhcCCCCcEEEccCCc-CcHHHHHHhhCCCCCCEEeccCC-CCChhHhHHHhCCCCccEEEcCC
Q 016017 235 LNRC--QLS-DDGCEKFSKIGSLKVLNLGFNE-ITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD 309 (396)
Q Consensus 235 l~~~--~~~-~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~ 309 (396)
+++| .++ ...+..+..+++|+.|++++|. +.+..+..+..+++|++|++++| .+.......+.++++|+.|++++
T Consensus 202 l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 281 (336)
T 2ast_B 202 LSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG 281 (336)
T ss_dssp CCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTT
T ss_pred eCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccC
Confidence 5555 233 2223344455666666666655 44333445556666666666666 34444444556667777777777
Q ss_pred CCCCchhHHhhcCCCCCCEEeccCcccChhhhHhhh
Q 016017 310 TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 345 (396)
Q Consensus 310 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~ 345 (396)
| +++.....+. ..++.|++++|.+++..+..++
T Consensus 282 ~-i~~~~~~~l~--~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 282 I-VPDGTLQLLK--EALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp S-SCTTCHHHHH--HHSTTSEESCCCSCCTTCSSCS
T ss_pred c-cCHHHHHHHH--hhCcceEEecccCccccCCccc
Confidence 6 5554444443 2234444666666665554443
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.92 E-value=1.3e-24 Score=192.58 Aligned_cols=259 Identities=23% Similarity=0.185 Sum_probs=145.4
Q ss_pred CCccEEEeecCCCChHHHHHhhCCCCCCeeeccCCcccChhHHHhhhCCCCCcEEeccCCccccHHHHHHHhCCCCCcEe
Q 016017 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136 (396)
Q Consensus 57 ~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 136 (396)
+++++|+++++++++.....+.++++|++|+++++ .+....+..+.++++|++|++++|.. .......+..+++|++|
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L 129 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSYNYL-SNLSSSWFKPLSSLTFL 129 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCC-SSCCHHHHTTCTTCSEE
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEEECCCCcC-CcCCHhHhCCCccCCEE
Confidence 46777777777776555556667777777777765 45555455566777777777777653 33334456667777777
Q ss_pred cccccccccCcc-cccCCCCcccEEecCCCCCccccccccccCCCCccEEEeecCCCChhHHHhccCCCCCCEEEecCCC
Q 016017 137 DLERCTRIHGGL-VNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215 (396)
Q Consensus 137 ~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 215 (396)
++++|....... ..+..+++|+.|+++++..++......+..+++|++|++++|.+....+..+..+++|+.|+++++.
T Consensus 130 ~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 209 (353)
T 2z80_A 130 NLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ 209 (353)
T ss_dssp ECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSC
T ss_pred ECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCc
Confidence 777664332222 2456666667776666444444444556666666666666666665555555666666666666665
Q ss_pred CChhhHHHHhcCCCCCEEECCCCCCChHHHHhhhcCCCCcEEEccCCcCcHHHHHHhhCCCCCCEEeccCCCCChh----
Q 016017 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE---- 291 (396)
Q Consensus 216 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~---- 291 (396)
+.......+..+++|+.|++++|.+.......+. .......++.+++.++.+.+.
T Consensus 210 l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~---------------------~~~~~~~l~~l~L~~~~l~~~~l~~ 268 (353)
T 2z80_A 210 HILLLEIFVDVTSSVECLELRDTDLDTFHFSELS---------------------TGETNSLIKKFTFRNVKITDESLFQ 268 (353)
T ss_dssp STTHHHHHHHHTTTEEEEEEESCBCTTCCCC---------------------------CCCCCCEEEEESCBCCHHHHHH
T ss_pred cccchhhhhhhcccccEEECCCCccccccccccc---------------------cccccchhhccccccccccCcchhh
Confidence 5443333344456666666666554432111110 112233445555555544432
Q ss_pred HhHHHhCCCCccEEEcCCCCCCchhHHhhcCCCCCCEEeccCcccCh
Q 016017 292 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338 (396)
Q Consensus 292 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 338 (396)
.+..+..+++|+.|++++|+++......+..+++|++|++++|.+..
T Consensus 269 l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 269 VMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp HHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred hHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccC
Confidence 23344555666666666666554333334556666666666665544
No 53
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.91 E-value=3.1e-23 Score=186.01 Aligned_cols=244 Identities=19% Similarity=0.182 Sum_probs=113.4
Q ss_pred HHHhCCCCCcEecccccccccCccc----ccCCCCcccEEecCCCC--Ccccccccc-------ccCCCCccEEEeecCC
Q 016017 125 KAFAGLINLVKLDLERCTRIHGGLV----NLKGLMKLESLNIKWCN--CITDSDMKP-------LSGLTNLKSLQISCSK 191 (396)
Q Consensus 125 ~~~~~~~~L~~L~l~~~~~~~~~~~----~l~~~~~L~~L~l~~~~--~~~~~~~~~-------l~~~~~L~~L~l~~~~ 191 (396)
..+..+++|++|++++|......+. .+..+++|+.|+++++. .+++..+.. +..+++|++|++++|.
T Consensus 26 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 105 (386)
T 2ca6_A 26 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA 105 (386)
T ss_dssp HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred HHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc
Confidence 4455677777777777654333222 24456666666666531 111111111 2344555555555554
Q ss_pred CChhHHHhccCCCCCCEEEecCCCCChhhHHHHhcCCCCCEEECCCCCCChHHHHhhh----cC---------CCCcEEE
Q 016017 192 VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS----KI---------GSLKVLN 258 (396)
Q Consensus 192 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~----~~---------~~L~~L~ 258 (396)
+...... ..+..+..+++|++|++++|.+....+..+. .+ ++|++|+
T Consensus 106 l~~~~~~--------------------~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~ 165 (386)
T 2ca6_A 106 FGPTAQE--------------------PLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSII 165 (386)
T ss_dssp CCTTTHH--------------------HHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEE
T ss_pred CCHHHHH--------------------HHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEE
Confidence 4441100 2233344444555555554444332222222 12 4555555
Q ss_pred ccCCcCcH-HHH---HHhhCCCCCCEEeccCCCCChhH----hH-HHhCCCCccEEEcCCCCCCc----hhHHhhcCCCC
Q 016017 259 LGFNEITD-ECL---VHLKGLTNLESLNLDSCGIGDEG----LV-NLTGLCNLKCLELSDTQVGS----SGLRHLSGLTN 325 (396)
Q Consensus 259 l~~~~~~~-~~~---~~l~~~~~L~~L~l~~~~~~~~~----~~-~~~~~~~L~~L~l~~~~~~~----~~~~~l~~~~~ 325 (396)
+++|.+.. ..+ ..+..+++|++|++++|.+...+ .. .+..+++|++|++++|.+++ ..+..+..+++
T Consensus 166 L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~ 245 (386)
T 2ca6_A 166 CGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPN 245 (386)
T ss_dssp CCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTT
T ss_pred CCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCC
Confidence 55554431 111 23344555555555555554321 11 33445555555555555542 22233445555
Q ss_pred CCEEeccCcccChhh----hHhhh--CCCCCCEeecCCCCCcHH----HHHHH-hcCccCCeeecCCCccChHH
Q 016017 326 LESINLSFTGISDGS----LRKLA--GLSSLKSLNLDARQITDT----GLAAL-TSLTGLTHLDLFGARITDSG 388 (396)
Q Consensus 326 L~~L~l~~~~~~~~~----~~~l~--~~~~L~~L~l~~~~l~~~----~~~~l-~~~~~L~~l~l~~~~l~~~~ 388 (396)
|++|++++|.+++.. +..+. .+++|+.|++++|.++.. .+..+ .++++|+.|++++|++++.+
T Consensus 246 L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 246 LRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp CCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred cCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 555555555555442 22221 155566666666555552 23333 34555666666666555544
No 54
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.91 E-value=1.8e-24 Score=197.46 Aligned_cols=228 Identities=22% Similarity=0.248 Sum_probs=140.6
Q ss_pred CCCcEecccccccccCcccccCCCCcccEEecCCCCCccccccccccCCCCccEEEeecCCCChhHHHhccCCCCCCEEE
Q 016017 131 INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210 (396)
Q Consensus 131 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 210 (396)
++++.|++++|.........+..+++|+.|++++ +.++......+.++++|++|++++|.++......+..+++|+.|+
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~-n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 142 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSR-NHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELW 142 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCS-SCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEE
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCC-CcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceee
Confidence 5677777777654444445566777777777776 334444555666677777777777766655555566667777777
Q ss_pred ecCCCCChhhHHHHhcCCCCCEEECCCCC-CChHHHHhhhcCCCCcEEEccCCcCcHHHHHHhhCCCCCCEEeccCCCCC
Q 016017 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 289 (396)
Q Consensus 211 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 289 (396)
+++|.+.......+..+++|+.|+++++. +.......+..+++|+.|++++|.+... + .+..+++|+.|++++|.+.
T Consensus 143 L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~ 220 (440)
T 3zyj_A 143 LRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI-P-NLTPLIKLDELDLSGNHLS 220 (440)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC-C-CCTTCSSCCEEECTTSCCC
T ss_pred CCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc-c-ccCCCcccCEEECCCCccC
Confidence 77776665444456666777777776643 3333333455666666676666665532 1 3455566666666666666
Q ss_pred hhHhHHHhCCCCccEEEcCCCCCCchhHHhhcCCCCCCEEeccCcccChhhhHhhhCCCCCCEeecCCCCCc
Q 016017 290 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 361 (396)
Q Consensus 290 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~ 361 (396)
...+..+..+++|+.|++++|.++......+..+++|++|++++|.++......+..+++|+.|++++|++.
T Consensus 221 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 221 AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp EECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred ccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 555555666666666666666666555555566666666666666666554555555666666666665543
No 55
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.91 E-value=2.2e-24 Score=197.54 Aligned_cols=228 Identities=25% Similarity=0.252 Sum_probs=142.9
Q ss_pred CCCcEecccccccccCcccccCCCCcccEEecCCCCCccccccccccCCCCccEEEeecCCCChhHHHhccCCCCCCEEE
Q 016017 131 INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210 (396)
Q Consensus 131 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 210 (396)
+++++|++++|......+..+..+++|+.|++++ +.++......+.++++|++|++++|.++......+..+++|+.|+
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~-n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGR-NSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELW 153 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEE
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCC-CccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEE
Confidence 5677777777655444455567777777777776 344545556666777777777777776665555566677777777
Q ss_pred ecCCCCChhhHHHHhcCCCCCEEECCCCC-CChHHHHhhhcCCCCcEEEccCCcCcHHHHHHhhCCCCCCEEeccCCCCC
Q 016017 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 289 (396)
Q Consensus 211 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 289 (396)
+++|.+.......+..+++|+.|+++++. +.......+..+++|+.|++++|.+... ..+..+++|+.|++++|.+.
T Consensus 154 L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~ 231 (452)
T 3zyi_A 154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM--PNLTPLVGLEELEMSGNHFP 231 (452)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC--CCCTTCTTCCEEECTTSCCS
T ss_pred CCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc--ccccccccccEEECcCCcCc
Confidence 77776665444456666777777776643 3333333455666677777766665543 13455666666666666666
Q ss_pred hhHhHHHhCCCCccEEEcCCCCCCchhHHhhcCCCCCCEEeccCcccChhhhHhhhCCCCCCEeecCCCCCc
Q 016017 290 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 361 (396)
Q Consensus 290 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~ 361 (396)
...+..+..+++|+.|++++|.++......+..+++|++|++++|.++......+..+++|+.|++++|++.
T Consensus 232 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 232 EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp EECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred ccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 555555666666666666666666555555566666666666666666544444555666666666665543
No 56
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.91 E-value=2.6e-24 Score=184.87 Aligned_cols=206 Identities=23% Similarity=0.248 Sum_probs=105.5
Q ss_pred CcccEEecCCCCCccccccccccCCCCccEEEeecCCCChhHHHhccCCCCCCEEEecCCC-CChhhHHHHhcCCCCCEE
Q 016017 155 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYL 233 (396)
Q Consensus 155 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L 233 (396)
++|+.|++++ +.++......+..+++|++|++++|.++...+..+..+++|+.|++++|. +....+..+..+++|++|
T Consensus 32 ~~l~~L~l~~-n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 32 AASQRIFLHG-NRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp TTCSEEECTT-SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCceEEEeeC-CcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 4566666665 33343344445556666666666665555444455555666666666554 443333444555555555
Q ss_pred ECCCCCCChHHHHhhhcCCCCcEEEccCCcCcHHHHHHhhCCCCCCEEeccCCCCChhHhHHHhCCCCccEEEcCCCCCC
Q 016017 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 313 (396)
Q Consensus 234 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 313 (396)
++++|.+....+..+..+++|+.|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.++
T Consensus 111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 190 (285)
T 1ozn_A 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190 (285)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccc
Confidence 55555554443444455555555555555544333333444555555555555554433333444555555555555554
Q ss_pred chhHHhhcCCCCCCEEeccCcccChhhhHhhhCCCCCCEeecCCCCCc
Q 016017 314 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 361 (396)
Q Consensus 314 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~ 361 (396)
+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++.
T Consensus 191 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 191 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred ccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 444444444555555555555554444444444555555555554443
No 57
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.91 E-value=1.9e-24 Score=206.97 Aligned_cols=332 Identities=23% Similarity=0.182 Sum_probs=223.9
Q ss_pred CCCccEEEeecCCCChHHHHHhhCCCCCCeeeccCCcccChhHHHhhhCCCCCcEEeccCCccccHHHHHHHhCCCCCcE
Q 016017 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135 (396)
Q Consensus 56 ~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 135 (396)
++++++|+|++|+++......|.++++|++|+|++| .+....+.+|.++++|++|++++|. +....+..|.++++|++
T Consensus 51 p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~f~~L~~L~~ 128 (635)
T 4g8a_A 51 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQK 128 (635)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC-CCEECGGGGTTCTTCCE
T ss_pred CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccCCc-CCCCCHHHhcCCCCCCE
Confidence 468999999999999777788999999999999997 6777767788999999999999997 45555567899999999
Q ss_pred ecccccccccCcccccCCCCcccEEecCCCCCccccccccccCCCCccEEEeecCCCChhHHHhccCCC-----------
Q 016017 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQ----------- 204 (396)
Q Consensus 136 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~----------- 204 (396)
|++++|.........++.+++|+.|+++++.......+..+..+++|++|++++|.+....+..+..+.
T Consensus 129 L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~l 208 (635)
T 4g8a_A 129 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 208 (635)
T ss_dssp EECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEEC
T ss_pred EECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhc
Confidence 999998665544556899999999999995544444566778899999999999877643322221110
Q ss_pred ----------------CCCEEEecCCCCChh-hHH---------------------------------------------
Q 016017 205 ----------------KLTLLNLEGCPVTAA-CLD--------------------------------------------- 222 (396)
Q Consensus 205 ----------------~L~~L~l~~~~~~~~-~~~--------------------------------------------- 222 (396)
.++.+++.++..... ...
T Consensus 209 s~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~ 288 (635)
T 4g8a_A 209 SLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 288 (635)
T ss_dssp TTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEE
T ss_pred ccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhh
Confidence 011112211110000 000
Q ss_pred ----------------------------------HHhcCCCCCEEECCCCCCChHHH-------------------Hhhh
Q 016017 223 ----------------------------------SLSALGSLFYLNLNRCQLSDDGC-------------------EKFS 249 (396)
Q Consensus 223 ----------------------------------~~~~~~~L~~L~l~~~~~~~~~~-------------------~~l~ 249 (396)
.+....+++.+++.++.+..... ....
T Consensus 289 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~ 368 (635)
T 4g8a_A 289 AYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV 368 (635)
T ss_dssp ECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCC
T ss_pred hhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccc
Confidence 01111223333332221110000 0001
Q ss_pred cCCCCcEEEccCCcCcH-------------------------------------------------H-HHHHhhCCCCCC
Q 016017 250 KIGSLKVLNLGFNEITD-------------------------------------------------E-CLVHLKGLTNLE 279 (396)
Q Consensus 250 ~~~~L~~L~l~~~~~~~-------------------------------------------------~-~~~~l~~~~~L~ 279 (396)
.+++|+.++++.+.+.. . ....+..+++++
T Consensus 369 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~ 448 (635)
T 4g8a_A 369 DLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 448 (635)
T ss_dssp BCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCC
T ss_pred cccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccc
Confidence 23344444444332210 0 011233445556
Q ss_pred EEeccCCCCChhHhHHHhCCCCccEEEcCCCCCCc-hhHHhhcCCCCCCEEeccCcccChhhhHhhhCCCCCCEeecCCC
Q 016017 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS-SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358 (396)
Q Consensus 280 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 358 (396)
.++++.+.+....+..+..++.++.|++++|.+.. ..+..+..+++|++|++++|.+++..+..+.++++|+.|+|++|
T Consensus 449 ~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N 528 (635)
T 4g8a_A 449 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 528 (635)
T ss_dssp EEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS
T ss_pred cccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCC
Confidence 66666665554445556677889999999886432 33456678899999999999999988888999999999999999
Q ss_pred CCcHHHHHHHhcCccCCeeecCCCccChHHH
Q 016017 359 QITDTGLAALTSLTGLTHLDLFGARITDSGA 389 (396)
Q Consensus 359 ~l~~~~~~~l~~~~~L~~l~l~~~~l~~~~~ 389 (396)
+++...+..+..+++|+.|++++|+++....
T Consensus 529 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~ 559 (635)
T 4g8a_A 529 NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 559 (635)
T ss_dssp CCCBCCCGGGTTCTTCCEEECTTSCCCBCCS
T ss_pred cCCCCChhHHhCCCCCCEEECCCCcCCCCCH
Confidence 9998777788999999999999999987643
No 58
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.91 E-value=4.1e-25 Score=191.93 Aligned_cols=230 Identities=21% Similarity=0.237 Sum_probs=159.2
Q ss_pred CCCCcEecccccccccCcccccCCCCcccEEecCCCCCccccc--cccccCCCCccEEEeecCCCChhHHHhccCCCCCC
Q 016017 130 LINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD--MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 207 (396)
Q Consensus 130 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~--~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 207 (396)
.++|++|++++|.........+..+++|+.|+++++. ++... +..+..+++|++|++++|.+... +..+..+++|+
T Consensus 27 ~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l-~~~~~~l~~L~ 104 (306)
T 2z66_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNG-LSFKGCCSQSDFGTTSLKYLDLSFNGVITM-SSNFLGLEQLE 104 (306)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCEEEEEEHHHHSCSCCCEEECCSCSEEEE-EEEEETCTTCC
T ss_pred CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCc-cCcccCcccccccccccCEEECCCCccccC-hhhcCCCCCCC
Confidence 3578888888875443333346778888888888743 33221 34455678888888888876643 33466778888
Q ss_pred EEEecCCCCChhhH-HHHhcCCCCCEEECCCCCCChHHHHhhhcCCCCcEEEccCCcCcH-HHHHHhhCCCCCCEEeccC
Q 016017 208 LLNLEGCPVTAACL-DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD-ECLVHLKGLTNLESLNLDS 285 (396)
Q Consensus 208 ~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~ 285 (396)
.|+++++.+..... ..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.+ ..+..+..+++|++|++++
T Consensus 105 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~ 184 (306)
T 2z66_A 105 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 184 (306)
T ss_dssp EEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTT
T ss_pred EEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCC
Confidence 88888876655322 356677888888888877665555566777788888888777654 2345566777888888888
Q ss_pred CCCChhHhHHHhCCCCccEEEcCCCCCCchhHHhhcCCCCCCEEeccCcccChhhhHhhhCCC-CCCEeecCCCCCc
Q 016017 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS-SLKSLNLDARQIT 361 (396)
Q Consensus 286 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~~~l~ 361 (396)
|.+.+..+..+..+++|++|++++|.+++.....+..+++|++|++++|.+++..+..+..++ +|+.|++++|++.
T Consensus 185 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 185 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp SCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred CCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCee
Confidence 877766566677777888888888877665555566777888888888877776666666664 7888888777765
No 59
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.90 E-value=5.7e-23 Score=184.32 Aligned_cols=238 Identities=16% Similarity=0.137 Sum_probs=137.8
Q ss_pred HHhhhCCCCCcEEeccCCccccHHHHHH----HhCCCCCcEecccccccc--c-Cccc-------ccCCCCcccEEecCC
Q 016017 99 LEHLRGLSNLTSLSFRRNNAITAQGMKA----FAGLINLVKLDLERCTRI--H-GGLV-------NLKGLMKLESLNIKW 164 (396)
Q Consensus 99 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~~--~-~~~~-------~l~~~~~L~~L~l~~ 164 (396)
...+..+++|++|++++|. +....+.. +..+++|++|++++|... . ..+. .+..+++|++|++++
T Consensus 25 ~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 25 FAVLLEDDSVKEIVLSGNT-IGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp SHHHHHCSCCCEEECTTSE-ECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHhcCCCccEEECCCCC-CCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 3456788999999999997 45554544 558999999999987322 1 1122 247889999999998
Q ss_pred CCCccc----cccccccCCCCccEEEeecCCCChhHHHhccC----C---------CCCCEEEecCCCCCh-hhH---HH
Q 016017 165 CNCITD----SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKG----L---------QKLTLLNLEGCPVTA-ACL---DS 223 (396)
Q Consensus 165 ~~~~~~----~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~----~---------~~L~~L~l~~~~~~~-~~~---~~ 223 (396)
+. ++. ..+..+..+++|++|++++|.++...+..+.. + ++|+.|++++|.+.. ..+ ..
T Consensus 104 n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 104 NA-FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp CC-CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred Cc-CCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence 54 444 23445677889999999988887554443332 2 677777777776652 222 24
Q ss_pred HhcCCCCCEEECCCCCCChHH----HH-hhhcCCCCcEEEccCCcCc----HHHHHHhhCCCCCCEEeccCCCCChhHh-
Q 016017 224 LSALGSLFYLNLNRCQLSDDG----CE-KFSKIGSLKVLNLGFNEIT----DECLVHLKGLTNLESLNLDSCGIGDEGL- 293 (396)
Q Consensus 224 ~~~~~~L~~L~l~~~~~~~~~----~~-~l~~~~~L~~L~l~~~~~~----~~~~~~l~~~~~L~~L~l~~~~~~~~~~- 293 (396)
+..+++|+.|++++|.+.... .. .+..+++|+.|++++|.+. ...+..+..+++|++|++++|.+.+.+.
T Consensus 183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 262 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA 262 (386)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred HHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHH
Confidence 445666666666666655332 11 3445556666666665553 2233344555555555555555554322
Q ss_pred ---HHHh--CCCCccEEEcCCCCCCch----hHHhh-cCCCCCCEEeccCcccCh
Q 016017 294 ---VNLT--GLCNLKCLELSDTQVGSS----GLRHL-SGLTNLESINLSFTGISD 338 (396)
Q Consensus 294 ---~~~~--~~~~L~~L~l~~~~~~~~----~~~~l-~~~~~L~~L~l~~~~~~~ 338 (396)
..+. .+++|++|++++|.++.. .+..+ ..+++|++|++++|.+++
T Consensus 263 ~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~ 317 (386)
T 2ca6_A 263 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317 (386)
T ss_dssp HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred HHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence 2221 144555555555554442 12222 234444444444444443
No 60
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.90 E-value=2.4e-24 Score=187.67 Aligned_cols=241 Identities=17% Similarity=0.133 Sum_probs=116.6
Q ss_pred HhhhCCCCCcEEeccCCccccHHHHHHHhCCCCCcEecccccccccCcccccCCCCcccEEecCCCCCccccccccccCC
Q 016017 100 EHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGL 179 (396)
Q Consensus 100 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 179 (396)
..+..+++|++|++++|. +....+..+..+++|++|++++|...... .+..+++|+.|+++++. ++. +...
T Consensus 28 ~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~l~~L~~L~Ls~n~-l~~-----l~~~ 98 (317)
T 3o53_A 28 SLRQSAWNVKELDLSGNP-LSQISAADLAPFTKLELLNLSSNVLYETL--DLESLSTLRTLDLNNNY-VQE-----LLVG 98 (317)
T ss_dssp HHHTTGGGCSEEECTTSC-CCCCCHHHHTTCTTCCEEECTTSCCEEEE--EETTCTTCCEEECCSSE-EEE-----EEEC
T ss_pred HHhccCCCCCEEECcCCc-cCcCCHHHhhCCCcCCEEECCCCcCCcch--hhhhcCCCCEEECcCCc-ccc-----ccCC
Confidence 334455667777777765 33444456666777777777665432211 15555666666665532 221 1223
Q ss_pred CCccEEEeecCCCChhHHHhccCCCCCCEEEecCCCCChhhHHHHhcCCCCCEEECCCCCCChHHHHhhhcCCCCcEEEc
Q 016017 180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 259 (396)
Q Consensus 180 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 259 (396)
++|++|++++|.++.... ..+++|+.|++++|.+.. ..+..+..+++|+.|++
T Consensus 99 ~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~N~l~~------------------------~~~~~~~~l~~L~~L~L 151 (317)
T 3o53_A 99 PSIETLHAANNNISRVSC---SRGQGKKNIYLANNKITM------------------------LRDLDEGCRSRVQYLDL 151 (317)
T ss_dssp TTCCEEECCSSCCSEEEE---CCCSSCEEEECCSSCCCS------------------------GGGBCTGGGSSEEEEEC
T ss_pred CCcCEEECCCCccCCcCc---cccCCCCEEECCCCCCCC------------------------ccchhhhccCCCCEEEC
Confidence 555555555555543221 223445555555544444 33333444444555555
Q ss_pred cCCcCcHHHHHHh-hCCCCCCEEeccCCCCChhHhHHHhCCCCccEEEcCCCCCCchhHHhhcCCCCCCEEeccCcccCh
Q 016017 260 GFNEITDECLVHL-KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338 (396)
Q Consensus 260 ~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 338 (396)
++|.+....+..+ ..+++|++|++++|.+.... ....+++|++|++++|.++..... +..+++|++|++++|.++.
T Consensus 152 s~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l~~ 228 (317)
T 3o53_A 152 KLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVL 228 (317)
T ss_dssp TTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCE
T ss_pred CCCCCCcccHHHHhhccCcCCEEECCCCcCcccc--cccccccCCEEECCCCcCCcchhh-hcccCcccEEECcCCcccc
Confidence 5444433222222 23445555555555444321 111244555555555555443222 4445555555555555553
Q ss_pred hhhHhhhCCCCCCEeecCCCCCc-HHHHHHHhcCccCCeeecC
Q 016017 339 GSLRKLAGLSSLKSLNLDARQIT-DTGLAALTSLTGLTHLDLF 380 (396)
Q Consensus 339 ~~~~~l~~~~~L~~L~l~~~~l~-~~~~~~l~~~~~L~~l~l~ 380 (396)
.+..+..+++|+.|++++|++. +..+..+..+++|+.+++.
T Consensus 229 -l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 229 -IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp -ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred -hhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence 2333445555555555555555 3334444555555555444
No 61
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.90 E-value=2.3e-25 Score=193.74 Aligned_cols=204 Identities=24% Similarity=0.290 Sum_probs=136.4
Q ss_pred CCCCccEEEeecCCCChhHHHhc--cCCCCCCEEEecCCCCChhhHHHHhcC-----CCCCEEECCCCCCChHHHHhhhc
Q 016017 178 GLTNLKSLQISCSKVTDSGIAYL--KGLQKLTLLNLEGCPVTAACLDSLSAL-----GSLFYLNLNRCQLSDDGCEKFSK 250 (396)
Q Consensus 178 ~~~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~~~~~~~~l~~ 250 (396)
.+++|++|++++|.+++..+..+ ..+++|+.|++++|.+... +..+..+ ++|++|++++|.+....+..++.
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 45566666666665554333333 5556666666666655543 3333333 67777777777666655566677
Q ss_pred CCCCcEEEccCCcCcHH--HHHHh--hCCCCCCEEeccCCCCCh---hHhHHHhCCCCccEEEcCCCCCCchhH-HhhcC
Q 016017 251 IGSLKVLNLGFNEITDE--CLVHL--KGLTNLESLNLDSCGIGD---EGLVNLTGLCNLKCLELSDTQVGSSGL-RHLSG 322 (396)
Q Consensus 251 ~~~L~~L~l~~~~~~~~--~~~~l--~~~~~L~~L~l~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~ 322 (396)
+++|+.|++++|.+.+. .+..+ ..+++|++|++++|.+.. .....+..+++|++|++++|.+++..+ ..+..
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 251 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW 251 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCC
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhh
Confidence 77777777777765543 22333 677888888888887763 222344567888888888888876542 33455
Q ss_pred CCCCCEEeccCcccChhhhHhhhCCCCCCEeecCCCCCcHHHHHHHhcCccCCeeecCCCccChH
Q 016017 323 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 387 (396)
Q Consensus 323 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~l~~~ 387 (396)
+++|++|++++|.++. .+..+. ++|+.|++++|++++. +. +..+++|++|++++|++++.
T Consensus 252 l~~L~~L~Ls~N~l~~-ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 252 PSQLNSLNLSFTGLKQ-VPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp CTTCCEEECTTSCCSS-CCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred cCCCCEEECCCCccCh-hhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence 7889999999988874 444443 7899999999988876 33 77889999999999988764
No 62
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.90 E-value=2.9e-22 Score=176.48 Aligned_cols=251 Identities=19% Similarity=0.239 Sum_probs=158.9
Q ss_pred CCcEEeccCCccccHHHHHHHhCC--CCCcEecccccccccCcccccCCCCcccEEecCCCCCcccc-ccccccCCCCcc
Q 016017 107 NLTSLSFRRNNAITAQGMKAFAGL--INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDS-DMKPLSGLTNLK 183 (396)
Q Consensus 107 ~L~~L~l~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~l~~~~~L~ 183 (396)
.++.++++++... +..+..+ ++++.++++++... .....+..+++|+.|+++++. ++.. .+..+..+++|+
T Consensus 48 ~~~~l~l~~~~~~----~~~~~~~~~~~l~~L~l~~n~l~-~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~~~~~~~~L~ 121 (336)
T 2ast_B 48 LWQTLDLTGKNLH----PDVTGRLLSQGVIAFRCPRSFMD-QPLAEHFSPFRVQHMDLSNSV-IEVSTLHGILSQCSKLQ 121 (336)
T ss_dssp TSSEEECTTCBCC----HHHHHHHHHTTCSEEECTTCEEC-SCCCSCCCCBCCCEEECTTCE-ECHHHHHHHHTTBCCCS
T ss_pred hheeeccccccCC----HHHHHhhhhccceEEEcCCcccc-ccchhhccCCCCCEEEccCCC-cCHHHHHHHHhhCCCCC
Confidence 4889999988643 2344444 78899998886533 333335567777888877754 3322 444566777777
Q ss_pred EEEeecCCCChhHHHhccCCCCCCEEEecCC-CCChh-hHHHHhcCCCCCEEECCCC-CCChH-HHHhhhcCC-CCcEEE
Q 016017 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAA-CLDSLSALGSLFYLNLNRC-QLSDD-GCEKFSKIG-SLKVLN 258 (396)
Q Consensus 184 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~l~~~~-~L~~L~ 258 (396)
+|++++|.+++..+..+..+++|+.|++++| .+... .+..+..+++|++|++++| .+.+. .+..+..++ +|+.|+
T Consensus 122 ~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~ 201 (336)
T 2ast_B 122 NLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLN 201 (336)
T ss_dssp EEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEE
T ss_pred EEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEE
Confidence 7777777777666666777777777777777 55542 4445666777777777777 66654 244556677 777777
Q ss_pred ccCC--cCc-HHHHHHhhCCCCCCEEeccCCC-CChhHhHHHhCCCCccEEEcCCC-CCCchhHHhhcCCCCCCEEeccC
Q 016017 259 LGFN--EIT-DECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDT-QVGSSGLRHLSGLTNLESINLSF 333 (396)
Q Consensus 259 l~~~--~~~-~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~ 333 (396)
+++| .+. ...+..+..+++|++|++++|. +++..+..+..+++|++|++++| .+++.....+..+++|++|++++
T Consensus 202 l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 281 (336)
T 2ast_B 202 LSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG 281 (336)
T ss_dssp CCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTT
T ss_pred eCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccC
Confidence 7776 343 2334455667777777777776 55555556666777777777777 45544444556677777777777
Q ss_pred cccChhhhHhhhCCCCCCEeecCCCCCcHHHHH
Q 016017 334 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 366 (396)
Q Consensus 334 ~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~ 366 (396)
| +++.....+. ..++.|++++|.+++..+.
T Consensus 282 ~-i~~~~~~~l~--~~l~~L~l~~n~l~~~~~~ 311 (336)
T 2ast_B 282 I-VPDGTLQLLK--EALPHLQINCSHFTTIARP 311 (336)
T ss_dssp S-SCTTCHHHHH--HHSTTSEESCCCSCCTTCS
T ss_pred c-cCHHHHHHHH--hhCcceEEecccCccccCC
Confidence 6 5544444433 2234444666666654443
No 63
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.90 E-value=2e-23 Score=191.21 Aligned_cols=228 Identities=21% Similarity=0.224 Sum_probs=182.8
Q ss_pred CCCcEEeccCCccccHHHHHHHhCCCCCcEecccccccccCcccccCCCCcccEEecCCCCCccccccccccCCCCccEE
Q 016017 106 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185 (396)
Q Consensus 106 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L 185 (396)
+++++|++++|. +....+..+..+++|++|++++|......+..+..+++|+.|++++ +.++......+..+++|++|
T Consensus 75 ~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L 152 (452)
T 3zyi_A 75 SNTRYLNLMENN-IQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD-NWLTVIPSGAFEYLSKLREL 152 (452)
T ss_dssp TTCSEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS-SCCSBCCTTTSSSCTTCCEE
T ss_pred CCccEEECcCCc-CceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC-CcCCccChhhhcccCCCCEE
Confidence 578999999887 4444456778899999999998866555556788889999999988 44565666668888999999
Q ss_pred EeecCCCChhHHHhccCCCCCCEEEecCC-CCChhhHHHHhcCCCCCEEECCCCCCChHHHHhhhcCCCCcEEEccCCcC
Q 016017 186 QISCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 264 (396)
Q Consensus 186 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 264 (396)
++++|.+.......+..+++|+.|+++++ .+.......+..+++|+.|++++|.+... ..+..+++|+.|++++|.+
T Consensus 153 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~Ls~N~l 230 (452)
T 3zyi_A 153 WLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM--PNLTPLVGLEELEMSGNHF 230 (452)
T ss_dssp ECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC--CCCTTCTTCCEEECTTSCC
T ss_pred ECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc--ccccccccccEEECcCCcC
Confidence 99999888776667888899999999885 44444344577889999999999887654 2467788999999999988
Q ss_pred cHHHHHHhhCCCCCCEEeccCCCCChhHhHHHhCCCCccEEEcCCCCCCchhHHhhcCCCCCCEEeccCcccC
Q 016017 265 TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 337 (396)
Q Consensus 265 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 337 (396)
....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|+++......+..+++|+.|++++|.+.
T Consensus 231 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 231 PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp SEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred cccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 7776777888899999999999888777777888899999999999888776667778899999999988654
No 64
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.90 E-value=2.6e-23 Score=189.68 Aligned_cols=228 Identities=21% Similarity=0.221 Sum_probs=186.2
Q ss_pred CCCcEEeccCCccccHHHHHHHhCCCCCcEecccccccccCcccccCCCCcccEEecCCCCCccccccccccCCCCccEE
Q 016017 106 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185 (396)
Q Consensus 106 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L 185 (396)
++++.|++++|. +....+..+..+++|++|++++|.........+..+++|+.|++++ +.++......+..+++|++|
T Consensus 64 ~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L 141 (440)
T 3zyj_A 64 TNTRLLNLHENQ-IQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD-NRLTTIPNGAFVYLSKLKEL 141 (440)
T ss_dssp TTCSEEECCSCC-CCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS-SCCSSCCTTTSCSCSSCCEE
T ss_pred CCCcEEEccCCc-CCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC-CcCCeeCHhHhhccccCcee
Confidence 578999999987 4444456788899999999999876555556788899999999998 45566566678889999999
Q ss_pred EeecCCCChhHHHhccCCCCCCEEEecCC-CCChhhHHHHhcCCCCCEEECCCCCCChHHHHhhhcCCCCcEEEccCCcC
Q 016017 186 QISCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 264 (396)
Q Consensus 186 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 264 (396)
++++|.+.......+..+++|+.|+++++ .+.......+..+++|+.|++++|.+.... .+..+++|+.|++++|.+
T Consensus 142 ~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~Ls~N~l 219 (440)
T 3zyj_A 142 WLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP--NLTPLIKLDELDLSGNHL 219 (440)
T ss_dssp ECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC--CCTTCSSCCEEECTTSCC
T ss_pred eCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc--ccCCCcccCEEECCCCcc
Confidence 99999888777777888999999999985 444444446778899999999999877543 467788999999999988
Q ss_pred cHHHHHHhhCCCCCCEEeccCCCCChhHhHHHhCCCCccEEEcCCCCCCchhHHhhcCCCCCCEEeccCcccC
Q 016017 265 TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 337 (396)
Q Consensus 265 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 337 (396)
....+..+..+++|+.|++.+|.+....+..+..+++|+.|++++|+++......+..+++|+.|++++|.+.
T Consensus 220 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 220 SAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred CccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 7766677888999999999999988777777888899999999999998777777788899999999988653
No 65
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.89 E-value=3.9e-24 Score=186.95 Aligned_cols=236 Identities=15% Similarity=0.122 Sum_probs=141.0
Q ss_pred CCCCCcEecccccccccCcccccCCCCcccEEecCCCCCccccccccccCCCCccEEEeecCCCChhHHHhccCCCCCCE
Q 016017 129 GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTL 208 (396)
Q Consensus 129 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 208 (396)
...++++|+++++... ..+..+..+++|++|+++++. ++ ..+..+..+++|++|++++|.+. ..+..+..+++|+.
T Consensus 79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~-l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~ 154 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAG-LM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRE 154 (328)
T ss_dssp TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSC-CC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCE
T ss_pred cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCC-cc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCE
Confidence 4678888888886543 455556667888888887743 33 34566777778888888877776 33556677777777
Q ss_pred EEecCCCCChhhHHHHhcCCCCCEEECCCCCCChHHHHhhhcCCCCcEEEccCCcCcHHHHHHhhCCCCCCEEeccCCCC
Q 016017 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 288 (396)
Q Consensus 209 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 288 (396)
|++++|......+..+.. ..+. ..+..+++|+.|++++|.+. ..+..+..+++|++|++++|.+
T Consensus 155 L~L~~n~~~~~~p~~~~~------~~~~---------~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l 218 (328)
T 4fcg_A 155 LSIRACPELTELPEPLAS------TDAS---------GEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPL 218 (328)
T ss_dssp EEEEEETTCCCCCSCSEE------EC-C---------CCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCC
T ss_pred EECCCCCCccccChhHhh------ccch---------hhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCC
Confidence 777776544333322221 0000 11234555666666655554 2234455566666666666655
Q ss_pred ChhHhHHHhCCCCccEEEcCCCCCCchhHHhhcCCCCCCEEeccCcccChhhhHhhhCCCCCCEeecCCCCCcHHHHHHH
Q 016017 289 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 368 (396)
Q Consensus 289 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l 368 (396)
... +..+..+++|++|++++|++.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..|..+
T Consensus 219 ~~l-~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l 297 (328)
T 4fcg_A 219 SAL-GPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI 297 (328)
T ss_dssp CCC-CGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGG
T ss_pred CcC-chhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHH
Confidence 532 2235556666666666665555444555566666666666665555555556666666666666666555555666
Q ss_pred hcCccCCeeecCCCccC
Q 016017 369 TSLTGLTHLDLFGARIT 385 (396)
Q Consensus 369 ~~~~~L~~l~l~~~~l~ 385 (396)
.++++|+.+++..+.+.
T Consensus 298 ~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 298 AQLPANCIILVPPHLQA 314 (328)
T ss_dssp GGSCTTCEEECCGGGSC
T ss_pred hhccCceEEeCCHHHHH
Confidence 66666666666655443
No 66
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.89 E-value=1e-23 Score=183.07 Aligned_cols=230 Identities=19% Similarity=0.222 Sum_probs=166.9
Q ss_pred CCCcEEeccCCccccHHHHHHHhCCCCCcEecccccccccCc--ccccCCCCcccEEecCCCCCccccccccccCCCCcc
Q 016017 106 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGG--LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183 (396)
Q Consensus 106 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 183 (396)
++|++|++++|.. .......+..+++|++|++++|...... +..+..+++|+.|+++++. +.. .+..+..+++|+
T Consensus 28 ~~l~~L~L~~n~l-~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~-l~~~~~~l~~L~ 104 (306)
T 2z66_A 28 SSATRLELESNKL-QSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VIT-MSSNFLGLEQLE 104 (306)
T ss_dssp TTCCEEECCSSCC-CCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS-EEE-EEEEEETCTTCC
T ss_pred CCCCEEECCCCcc-CccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc-ccc-ChhhcCCCCCCC
Confidence 5788888888764 3333344677888888888886543221 2345567888888888744 332 344577788888
Q ss_pred EEEeecCCCChhHH-HhccCCCCCCEEEecCCCCChhhHHHHhcCCCCCEEECCCCCCCh-HHHHhhhcCCCCcEEEccC
Q 016017 184 SLQISCSKVTDSGI-AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD-DGCEKFSKIGSLKVLNLGF 261 (396)
Q Consensus 184 ~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~ 261 (396)
+|++++|.+..... ..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.. ..+..+..+++|+.|++++
T Consensus 105 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~ 184 (306)
T 2z66_A 105 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 184 (306)
T ss_dssp EEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTT
T ss_pred EEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCC
Confidence 88888887765543 456778888888888887766556667778888888888887654 3445667788888888888
Q ss_pred CcCcHHHHHHhhCCCCCCEEeccCCCCChhHhHHHhCCCCccEEEcCCCCCCchhHHhhcCCC-CCCEEeccCcccCh
Q 016017 262 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT-NLESINLSFTGISD 338 (396)
Q Consensus 262 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~ 338 (396)
|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+++..+..+..++ +|++|++++|.++.
T Consensus 185 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 185 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp SCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred CCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence 887766566677788888888888887766555677788888888888888776666666664 88888888887653
No 67
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.89 E-value=5.3e-23 Score=176.64 Aligned_cols=268 Identities=20% Similarity=0.186 Sum_probs=184.5
Q ss_pred cEEeccCCccccHHHHHHHhCCCCCcEecccccccccCcccccCCCCcccEEecCCCCCccccccccccCCCCccEEEee
Q 016017 109 TSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188 (396)
Q Consensus 109 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 188 (396)
++++.++... ... +. ...++|++|+++++.........+..+++|+.|++++ +.++...+..+..+++|++|+++
T Consensus 14 ~~~~c~~~~l-~~i-p~--~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~ 88 (285)
T 1ozn_A 14 VTTSCPQQGL-QAV-PV--GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHS-NVLARIDAAAFTGLALLEQLDLS 88 (285)
T ss_dssp CEEECCSSCC-SSC-CT--TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECC
T ss_pred eEEEcCcCCc-ccC-Cc--CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCC-CccceeCHhhcCCccCCCEEeCC
Confidence 5666666543 221 11 2346888888888765544445678888888888887 34555556677788888888888
Q ss_pred cCC-CChhHHHhccCCCCCCEEEecCCCCChhhHHHHhcCCCCCEEECCCCCCChHHHHhhhcCCCCcEEEccCCcCcHH
Q 016017 189 CSK-VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 267 (396)
Q Consensus 189 ~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 267 (396)
+|. +....+..+..+++|+.|+++++.+....+..+..+++|++|++++|.+.......+..+++|+.|++++|.+...
T Consensus 89 ~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 168 (285)
T 1ozn_A 89 DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV 168 (285)
T ss_dssp SCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEE
T ss_pred CCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccccc
Confidence 886 6665566777888888888888877765566677788888888888887766555677788888888888877765
Q ss_pred HHHHhhCCCCCCEEeccCCCCChhHhHHHhCCCCccEEEcCCCCCCchhHHhhcCCCCCCEEeccCcccChhhhH-hhhC
Q 016017 268 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR-KLAG 346 (396)
Q Consensus 268 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~l~~ 346 (396)
.+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++.....+..+++|++|++++|.+...... .+.
T Consensus 169 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~- 247 (285)
T 1ozn_A 169 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLW- 247 (285)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHH-
T ss_pred CHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHH-
Confidence 445577788888888888888776677777888888888888888877777778888888888888866532111 111
Q ss_pred CCCCCEeecCCCCCcHHHHHHHh--cCccCCeeecCCCc
Q 016017 347 LSSLKSLNLDARQITDTGLAALT--SLTGLTHLDLFGAR 383 (396)
Q Consensus 347 ~~~L~~L~l~~~~l~~~~~~~l~--~~~~L~~l~l~~~~ 383 (396)
..++.+....+.+....|..+. .+..++..++.||+
T Consensus 248 -~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~C~ 285 (285)
T 1ozn_A 248 -AWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGCA 285 (285)
T ss_dssp -HHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCCC-
T ss_pred -HHHHhcccccCccccCCchHhCCcChhhcCHHHhccCC
Confidence 1223333333444332233333 24556666676663
No 68
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.89 E-value=1.6e-23 Score=183.03 Aligned_cols=236 Identities=17% Similarity=0.095 Sum_probs=152.7
Q ss_pred CCCCCcEEeccCCccccHHHHHHHhCCCCCcEecccccccccCcccccCCCCcccEEecCCCCCccccccccccCCCCcc
Q 016017 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183 (396)
Q Consensus 104 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 183 (396)
..+++++|+++++.. . ..+..+..+++|++|++++|... ..+..+..+++|++|+++++. ++ ..+..+..+++|+
T Consensus 79 ~~~~l~~L~L~~n~l-~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~-l~-~lp~~l~~l~~L~ 153 (328)
T 4fcg_A 79 TQPGRVALELRSVPL-P-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNP-LR-ALPASIASLNRLR 153 (328)
T ss_dssp TSTTCCEEEEESSCC-S-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCC-CC-CCCGGGGGCTTCC
T ss_pred cccceeEEEccCCCc-h-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCc-cc-cCcHHHhcCcCCC
Confidence 468899999999875 3 33455778999999999998655 666678999999999999954 44 4567789999999
Q ss_pred EEEeecCCCChhHHHhccCCCCCCEEEecCCCCChhhHHHHhcCCCCCEEECCCCCCChHHHHhhhcCCCCcEEEccCCc
Q 016017 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE 263 (396)
Q Consensus 184 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 263 (396)
+|++++|......+..+.. ..+. ..+..+++|+.|++++|.+. ..+..+..+++|+.|++++|.
T Consensus 154 ~L~L~~n~~~~~~p~~~~~------~~~~---------~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~ 217 (328)
T 4fcg_A 154 ELSIRACPELTELPEPLAS------TDAS---------GEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSP 217 (328)
T ss_dssp EEEEEEETTCCCCCSCSEE------EC-C---------CCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSC
T ss_pred EEECCCCCCccccChhHhh------ccch---------hhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCC
Confidence 9999998766544433322 0000 01223344444444444433 122334455555555555555
Q ss_pred CcHHHHHHhhCCCCCCEEeccCCCCChhHhHHHhCCCCccEEEcCCCCCCchhHHhhcCCCCCCEEeccCcccChhhhHh
Q 016017 264 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343 (396)
Q Consensus 264 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 343 (396)
+... +..+..+++|+.|++++|.+.+..+..+..+++|++|++++|++.+..+..+..+++|++|++++|.+.+..+..
T Consensus 218 l~~l-~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~ 296 (328)
T 4fcg_A 218 LSAL-GPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL 296 (328)
T ss_dssp CCCC-CGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGG
T ss_pred CCcC-chhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHH
Confidence 4432 223555666666666666555555555666677777777776665555555666777777777777666667777
Q ss_pred hhCCCCCCEeecCCCCCc
Q 016017 344 LAGLSSLKSLNLDARQIT 361 (396)
Q Consensus 344 l~~~~~L~~L~l~~~~l~ 361 (396)
+..+++|+.+++..+.+.
T Consensus 297 l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 297 IAQLPANCIILVPPHLQA 314 (328)
T ss_dssp GGGSCTTCEEECCGGGSC
T ss_pred HhhccCceEEeCCHHHHH
Confidence 777777777777655433
No 69
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.88 E-value=2.1e-23 Score=181.75 Aligned_cols=242 Identities=18% Similarity=0.129 Sum_probs=165.4
Q ss_pred CcEEeccCCccccHHHHHHHhCCCCCcEecccccccccCcccccCCCCcccEEecCCCCCccccccccccCCCCccEEEe
Q 016017 108 LTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187 (396)
Q Consensus 108 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l 187 (396)
++..+++.+. +.......+..+++|++|++++|......+..+..+++|+.|++++
T Consensus 12 l~i~~ls~~~-l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~----------------------- 67 (317)
T 3o53_A 12 YKIEKVTDSS-LKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS----------------------- 67 (317)
T ss_dssp EEEESCCTTT-HHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTT-----------------------
T ss_pred eeEeeccccc-hhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCC-----------------------
Confidence 4455555554 2333334444566677777776544333333445555555555554
Q ss_pred ecCCCChhHHHhccCCCCCCEEEecCCCCChhhHHHHhcCCCCCEEECCCCCCChHHHHhhhcCCCCcEEEccCCcCcHH
Q 016017 188 SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 267 (396)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 267 (396)
|.++...+ +..+++|+.|++++|.+... ...++|+.|++++|.+..... ..+++|+.|++++|.+...
T Consensus 68 --n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l-----~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~N~l~~~ 135 (317)
T 3o53_A 68 --NVLYETLD--LESLSTLRTLDLNNNYVQEL-----LVGPSIETLHAANNNISRVSC---SRGQGKKNIYLANNKITML 135 (317)
T ss_dssp --SCCEEEEE--ETTCTTCCEEECCSSEEEEE-----EECTTCCEEECCSSCCSEEEE---CCCSSCEEEECCSSCCCSG
T ss_pred --CcCCcchh--hhhcCCCCEEECcCCccccc-----cCCCCcCEEECCCCccCCcCc---cccCCCCEEECCCCCCCCc
Confidence 44332221 44444555555555443321 123667777777766654332 2467899999999988876
Q ss_pred HHHHhhCCCCCCEEeccCCCCChhHhHHH-hCCCCccEEEcCCCCCCchhHHhhcCCCCCCEEeccCcccChhhhHhhhC
Q 016017 268 CLVHLKGLTNLESLNLDSCGIGDEGLVNL-TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG 346 (396)
Q Consensus 268 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~ 346 (396)
.+..+..+++|+.|++++|.+....+..+ ..+++|++|++++|.++.. .....+++|++|++++|.+++.. ..+..
T Consensus 136 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~~l~~L~~L~Ls~N~l~~l~-~~~~~ 212 (317)
T 3o53_A 136 RDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLAFMG-PEFQS 212 (317)
T ss_dssp GGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCCCEEC-GGGGG
T ss_pred cchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc--ccccccccCCEEECCCCcCCcch-hhhcc
Confidence 66667888999999999999987665555 4689999999999999765 23345899999999999998743 44788
Q ss_pred CCCCCEeecCCCCCcHHHHHHHhcCccCCeeecCCCccChHHH
Q 016017 347 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 389 (396)
Q Consensus 347 ~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~l~~~~~ 389 (396)
+++|+.|++++|.+... +..+..+++|+.|++++|+++....
T Consensus 213 l~~L~~L~L~~N~l~~l-~~~~~~l~~L~~L~l~~N~~~~~~~ 254 (317)
T 3o53_A 213 AAGVTWISLRNNKLVLI-EKALRFSQNLEHFDLRGNGFHCGTL 254 (317)
T ss_dssp GTTCSEEECTTSCCCEE-CTTCCCCTTCCEEECTTCCCBHHHH
T ss_pred cCcccEEECcCCcccch-hhHhhcCCCCCEEEccCCCccCcCH
Confidence 99999999999999965 5567889999999999999984433
No 70
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=2e-22 Score=178.99 Aligned_cols=252 Identities=15% Similarity=0.162 Sum_probs=161.9
Q ss_pred EEeccCCccccHHHHHHHhCCCCCcEecccccccccCcc----cccCCCC-cccEEecCCCCCccccccccccCC-----
Q 016017 110 SLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGL----VNLKGLM-KLESLNIKWCNCITDSDMKPLSGL----- 179 (396)
Q Consensus 110 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~l~~~~-~L~~L~l~~~~~~~~~~~~~l~~~----- 179 (396)
+++++.+. +....+..+....+|++|++++|....... ..+..++ +|++|+++++ .++......+..+
T Consensus 2 ~~~ls~n~-~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~ 79 (362)
T 3goz_A 2 NYKLTLHP-GSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIP 79 (362)
T ss_dssp EEECCCCT-TCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSC
T ss_pred cccccccc-chHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccC
Confidence 35677776 444555566666679999999987555554 4566777 7888888884 4555445545443
Q ss_pred CCccEEEeecCCCChhHHHh----ccCC-CCCCEEEecCCCCChhhHHHHh----c-CCCCCEEECCCCCCChHH----H
Q 016017 180 TNLKSLQISCSKVTDSGIAY----LKGL-QKLTLLNLEGCPVTAACLDSLS----A-LGSLFYLNLNRCQLSDDG----C 245 (396)
Q Consensus 180 ~~L~~L~l~~~~~~~~~~~~----~~~~-~~L~~L~l~~~~~~~~~~~~~~----~-~~~L~~L~l~~~~~~~~~----~ 245 (396)
++|++|++++|.++...+.. +..+ ++|+.|++++|.+.......+. . .++|++|++++|.+.+.. .
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~ 159 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELI 159 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHH
Confidence 78888888888877654443 3334 7888888888877664444332 3 358888888888776433 3
Q ss_pred HhhhcCC-CCcEEEccCCcCcHHHHH----HhhCC-CCCCEEeccCCCCChhH----hHHHhC-CCCccEEEcCCCCCCc
Q 016017 246 EKFSKIG-SLKVLNLGFNEITDECLV----HLKGL-TNLESLNLDSCGIGDEG----LVNLTG-LCNLKCLELSDTQVGS 314 (396)
Q Consensus 246 ~~l~~~~-~L~~L~l~~~~~~~~~~~----~l~~~-~~L~~L~l~~~~~~~~~----~~~~~~-~~~L~~L~l~~~~~~~ 314 (396)
..+...+ +|+.|++++|.+.+..+. .+..+ ++|++|++++|.+.+.+ +..+.. .++|++|++++|.+++
T Consensus 160 ~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 239 (362)
T 3goz_A 160 QILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHG 239 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCC
T ss_pred HHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCc
Confidence 3344554 788888888877544332 33445 48888888888776533 233333 3478888888887776
Q ss_pred hhHHh----hcCCCCCCEEeccCcc---cChhhhH----hhhCCCCCCEeecCCCCCcHH
Q 016017 315 SGLRH----LSGLTNLESINLSFTG---ISDGSLR----KLAGLSSLKSLNLDARQITDT 363 (396)
Q Consensus 315 ~~~~~----l~~~~~L~~L~l~~~~---~~~~~~~----~l~~~~~L~~L~l~~~~l~~~ 363 (396)
.+... +..+++|++|++++|. ++..... .+..+++|+.|++++|.+.+.
T Consensus 240 ~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 240 PSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp CCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 55433 3566778888888876 3332222 233566777788888777654
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.87 E-value=5.2e-22 Score=182.70 Aligned_cols=233 Identities=19% Similarity=0.144 Sum_probs=134.5
Q ss_pred CCcEecccccccccCcccccCCCCcccEEecCCCCCccccccccccCCCCccEEEeecCCCChhHHHhccCCCCCCEEEe
Q 016017 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211 (396)
Q Consensus 132 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 211 (396)
+|++|++++|......+..+..+++|+.|+++++. +++..+ +..+++|++|++++|.++. +...++|+.|++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~--l~~l~~L~~L~Ls~N~l~~-----l~~~~~L~~L~L 106 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLD--LESLSTLRTLDLNNNYVQE-----LLVGPSIETLHA 106 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSC-CEEEEE--CTTCTTCCEEECCSSEEEE-----EEECTTCCEEEC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCC-CCCCcc--cccCCCCCEEEecCCcCCC-----CCCCCCcCEEEC
Confidence 45555555544333333345555555555555532 222111 5555666666666665543 222356666666
Q ss_pred cCCCCChhhHHHHhcCCCCCEEECCCCCCChHHHHhhhcCCCCcEEEccCCcCcHHHHHHhh-CCCCCCEEeccCCCCCh
Q 016017 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK-GLTNLESLNLDSCGIGD 290 (396)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~ 290 (396)
++|.+....+ ..+++|+.|++++|.+....+..+..+++|+.|++++|.+.+..+..+. .+++|+.|++++|.+.+
T Consensus 107 ~~N~l~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 107 ANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp CSSCCCCEEE---CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred cCCcCCCCCc---cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence 6665554322 2346666777766666655555566666777777777666554444443 56677777777776654
Q ss_pred hHhHHHhCCCCccEEEcCCCCCCchhHHhhcCCCCCCEEeccCcccChhhhHhhhCCCCCCEeecCCCCCc-HHHHHHHh
Q 016017 291 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT-DTGLAALT 369 (396)
Q Consensus 291 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~-~~~~~~l~ 369 (396)
.. ....+++|+.|++++|.+++..+. +..+++|+.|++++|.+++ .+..+..+++|+.|++++|.+. +..+..+.
T Consensus 184 ~~--~~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~ 259 (487)
T 3oja_A 184 VK--GQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFS 259 (487)
T ss_dssp EE--CCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHT
T ss_pred cc--ccccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHH
Confidence 32 123466777777777777654333 5566777777777777665 4445566677777777777776 44445556
Q ss_pred cCccCCeeec
Q 016017 370 SLTGLTHLDL 379 (396)
Q Consensus 370 ~~~~L~~l~l 379 (396)
.++.|+.+++
T Consensus 260 ~l~~L~~l~~ 269 (487)
T 3oja_A 260 KNQRVQTVAK 269 (487)
T ss_dssp TCHHHHHHHH
T ss_pred hCCCCcEEec
Confidence 6666665555
No 72
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.87 E-value=1.7e-23 Score=181.94 Aligned_cols=180 Identities=18% Similarity=0.204 Sum_probs=111.2
Q ss_pred cCCCCccEEEeecCCCChhHHHhccCC-----CCCCEEEecCCCCChhhHHHHhcCCCCCEEECCCCCCChH--HHHhh-
Q 016017 177 SGLTNLKSLQISCSKVTDSGIAYLKGL-----QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD--GCEKF- 248 (396)
Q Consensus 177 ~~~~~L~~L~l~~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~l- 248 (396)
..+++|++|++++|.++.. +..+..+ ++|+.|++++|.+....+..+..+++|+.|++++|.+.+. .+..+
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 196 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC 196 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence 4455555555555555443 2222222 5666666666655554444555666666666666654432 12223
Q ss_pred -hcCCCCcEEEccCCcCc---HHHHHHhhCCCCCCEEeccCCCCChhHh-HHHhCCCCccEEEcCCCCCCchhHHhhcCC
Q 016017 249 -SKIGSLKVLNLGFNEIT---DECLVHLKGLTNLESLNLDSCGIGDEGL-VNLTGLCNLKCLELSDTQVGSSGLRHLSGL 323 (396)
Q Consensus 249 -~~~~~L~~L~l~~~~~~---~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~ 323 (396)
..+++|+.|++++|.+. ......+..+++|+.|++++|.+.+..+ ..+..+++|++|++++|.++.. +..+.
T Consensus 197 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~i-p~~~~-- 273 (312)
T 1wwl_A 197 PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQV-PKGLP-- 273 (312)
T ss_dssp TTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSC-CSSCC--
T ss_pred hccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChh-hhhcc--
Confidence 56677777777777665 2222334567788888888887765432 3344567888888888887632 22222
Q ss_pred CCCCEEeccCcccChhhhHhhhCCCCCCEeecCCCCCcH
Q 016017 324 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362 (396)
Q Consensus 324 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~ 362 (396)
++|++|++++|.+++. +. +..+++|+.|++++|++++
T Consensus 274 ~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 274 AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 7888888888888775 33 6778888899988888764
No 73
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.87 E-value=1.3e-21 Score=173.68 Aligned_cols=254 Identities=18% Similarity=0.175 Sum_probs=182.2
Q ss_pred eeccCCcccChhHHHhhhCCCCCcEEeccCCccccHHHH----HHHhCCC-CCcEecccccccccCcccccCCC-----C
Q 016017 86 LDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM----KAFAGLI-NLVKLDLERCTRIHGGLVNLKGL-----M 155 (396)
Q Consensus 86 L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~-~L~~L~l~~~~~~~~~~~~l~~~-----~ 155 (396)
..++.+ .+.+..+..+...++|++|++++|. +..... ..+..++ +|++|++++|......+..+..+ +
T Consensus 3 ~~ls~n-~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 3 YKLTLH-PGSNPVEEFTSIPHGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80 (362)
T ss_dssp EECCCC-TTCCHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred cccccc-cchHHHHHHHhCCCCceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence 355554 5666666666666679999999987 444444 6677888 89999999987665555555443 8
Q ss_pred cccEEecCCCCCcccccccc----ccCC-CCccEEEeecCCCChhHHHhc----cC-CCCCCEEEecCCCCCh----hhH
Q 016017 156 KLESLNIKWCNCITDSDMKP----LSGL-TNLKSLQISCSKVTDSGIAYL----KG-LQKLTLLNLEGCPVTA----ACL 221 (396)
Q Consensus 156 ~L~~L~l~~~~~~~~~~~~~----l~~~-~~L~~L~l~~~~~~~~~~~~~----~~-~~~L~~L~l~~~~~~~----~~~ 221 (396)
+|++|+++++. ++...... +..+ ++|++|++++|.++......+ .. .++|+.|++++|.+.. ...
T Consensus 81 ~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~ 159 (362)
T 3goz_A 81 NVTSLNLSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELI 159 (362)
T ss_dssp TCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred CccEEECcCCc-CChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHH
Confidence 99999999854 55444443 3444 899999999999887655444 33 4699999999998874 334
Q ss_pred HHHhcCC-CCCEEECCCCCCChHHHH----hhhcC-CCCcEEEccCCcCcHH----HHHHhhC-CCCCCEEeccCCCCCh
Q 016017 222 DSLSALG-SLFYLNLNRCQLSDDGCE----KFSKI-GSLKVLNLGFNEITDE----CLVHLKG-LTNLESLNLDSCGIGD 290 (396)
Q Consensus 222 ~~~~~~~-~L~~L~l~~~~~~~~~~~----~l~~~-~~L~~L~l~~~~~~~~----~~~~l~~-~~~L~~L~l~~~~~~~ 290 (396)
..+...+ +|+.|++++|.+.+..+. .+..+ ++|+.|++++|.+.+. .+..+.. .++|++|++++|.+.+
T Consensus 160 ~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 239 (362)
T 3goz_A 160 QILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHG 239 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCC
T ss_pred HHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCc
Confidence 4455665 999999999988765543 34455 5999999999988762 3444555 4699999999999887
Q ss_pred hHhHH----HhCCCCccEEEcCCCC---CCchhHHh----hcCCCCCCEEeccCcccChhhhH
Q 016017 291 EGLVN----LTGLCNLKCLELSDTQ---VGSSGLRH----LSGLTNLESINLSFTGISDGSLR 342 (396)
Q Consensus 291 ~~~~~----~~~~~~L~~L~l~~~~---~~~~~~~~----l~~~~~L~~L~l~~~~~~~~~~~ 342 (396)
.+... +..+++|++|++++|. ++...... +..+++|++|++++|.+.+..+.
T Consensus 240 ~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~ 302 (362)
T 3goz_A 240 PSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSI 302 (362)
T ss_dssp CCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCH
T ss_pred HHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchH
Confidence 55433 3567899999999997 44443333 35678899999999988775433
No 74
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.86 E-value=5.4e-21 Score=174.22 Aligned_cols=285 Identities=19% Similarity=0.107 Sum_probs=125.1
Q ss_pred CCCccEEEeecCCCChHHHHHhhCCCCCCeeeccCCcccChhHHHhhhCC-CCCcEEeccCCccccHHHHHHHhCCCCCc
Q 016017 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGL-SNLTSLSFRRNNAITAQGMKAFAGLINLV 134 (396)
Q Consensus 56 ~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 134 (396)
+++++.|+++++.+++ .+ ...++|++|+++++ .+.. +... ++|++|++++|... .. + .++.+++|+
T Consensus 90 ~~~L~~L~l~~n~l~~-lp---~~~~~L~~L~l~~n-~l~~-----l~~~~~~L~~L~L~~n~l~-~l-p-~~~~l~~L~ 156 (454)
T 1jl5_A 90 PPHLESLVASCNSLTE-LP---ELPQSLKSLLVDNN-NLKA-----LSDLPPLLEYLGVSNNQLE-KL-P-ELQNSSFLK 156 (454)
T ss_dssp CTTCSEEECCSSCCSS-CC---CCCTTCCEEECCSS-CCSC-----CCSCCTTCCEEECCSSCCS-SC-C-CCTTCTTCC
T ss_pred cCCCCEEEccCCcCCc-cc---cccCCCcEEECCCC-ccCc-----ccCCCCCCCEEECcCCCCC-CC-c-ccCCCCCCC
Confidence 3566666666666553 11 12245555555554 2222 1111 34555555555432 11 1 244555555
Q ss_pred EecccccccccCcccccCCCCcccEEecCCCCCccccccccccCCCCccEEEeecCCCChh-------------------
Q 016017 135 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS------------------- 195 (396)
Q Consensus 135 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~------------------- 195 (396)
+|++++|... ..+. ..++|+.|+++++. ++.. ..+..+++|++|++++|.+...
T Consensus 157 ~L~l~~N~l~-~lp~---~~~~L~~L~L~~n~-l~~l--~~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n~l~~ 229 (454)
T 1jl5_A 157 IIDVDNNSLK-KLPD---LPPSLEFIAAGNNQ-LEEL--PELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEE 229 (454)
T ss_dssp EEECCSSCCS-CCCC---CCTTCCEEECCSSC-CSSC--CCCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSS
T ss_pred EEECCCCcCc-ccCC---CcccccEEECcCCc-CCcC--ccccCCCCCCEEECCCCcCCcCCCCcCcccEEECcCCcCCc
Confidence 5555554321 1111 11345555554422 2221 1344444444444444444321
Q ss_pred HHHhccCCCCCCEEEecCCCCChhhHHHHhcCCCCCEEECCCCCCChHHHHhhhcCCCCcEEEccCCcCcHHHHHHhhCC
Q 016017 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 275 (396)
Q Consensus 196 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~ 275 (396)
.+ .+..+++|+.|++++|.+... +. ..++|+.|++++|.+.... ...++|+.|++++|.+.+.. ...
T Consensus 230 lp-~~~~l~~L~~L~l~~N~l~~l-~~---~~~~L~~L~l~~N~l~~l~----~~~~~L~~L~ls~N~l~~l~----~~~ 296 (454)
T 1jl5_A 230 LP-ELQNLPFLTTIYADNNLLKTL-PD---LPPSLEALNVRDNYLTDLP----ELPQSLTFLDVSENIFSGLS----ELP 296 (454)
T ss_dssp CC-CCTTCTTCCEEECCSSCCSSC-CS---CCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSEES----CCC
T ss_pred cc-ccCCCCCCCEEECCCCcCCcc-cc---cccccCEEECCCCcccccC----cccCcCCEEECcCCccCccc----CcC
Confidence 11 244444455555554444321 10 1244455555444433211 11244555555555444310 012
Q ss_pred CCCCEEeccCCCCChhHhHHHhCC-CCccEEEcCCCCCCchhHHhhcCCCCCCEEeccCcccChhhhHhhhCCCCCCEee
Q 016017 276 TNLESLNLDSCGIGDEGLVNLTGL-CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 354 (396)
Q Consensus 276 ~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 354 (396)
++|+.|++++|.+.. +... ++|+.|++++|.+++.. ..+++|++|++++|.++. .+. .+++|+.|+
T Consensus 297 ~~L~~L~l~~N~l~~-----i~~~~~~L~~L~Ls~N~l~~lp----~~~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~ 363 (454)
T 1jl5_A 297 PNLYYLNASSNEIRS-----LCDLPPSLEELNVSNNKLIELP----ALPPRLERLIASFNHLAE-VPE---LPQNLKQLH 363 (454)
T ss_dssp TTCCEEECCSSCCSE-----ECCCCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEE
T ss_pred CcCCEEECcCCcCCc-----ccCCcCcCCEEECCCCcccccc----ccCCcCCEEECCCCcccc-ccc---hhhhccEEE
Confidence 455666666555543 1223 36777777777665421 124677777777777664 222 357788888
Q ss_pred cCCCCCcH--HHHHHHhcC-------------ccCCeeecCCCccCh
Q 016017 355 LDARQITD--TGLAALTSL-------------TGLTHLDLFGARITD 386 (396)
Q Consensus 355 l~~~~l~~--~~~~~l~~~-------------~~L~~l~l~~~~l~~ 386 (396)
+++|++.+ ..+..+..+ ++|+.|++++|++++
T Consensus 364 L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~ 410 (454)
T 1jl5_A 364 VEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLRE 410 (454)
T ss_dssp CCSSCCSSCCCCCTTCCEEECCC------------------------
T ss_pred CCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCc
Confidence 88877766 334444444 678888888887765
No 75
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.86 E-value=2.7e-22 Score=184.60 Aligned_cols=223 Identities=18% Similarity=0.163 Sum_probs=186.5
Q ss_pred CCCCcccEEecCCCCCccccccccccCCCCccEEEeecCCCChhHHHhccCCCCCCEEEecCCCCChhhHHHHhcCCCCC
Q 016017 152 KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231 (396)
Q Consensus 152 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 231 (396)
..+++|+.|++++ +.++...+..+..+++|++|++++|.+++..+ +..+++|+.|++++|.+... ...++|+
T Consensus 31 ~~~~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-----~~~~~L~ 102 (487)
T 3oja_A 31 QSAWNVKELDLSG-NPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-----LVGPSIE 102 (487)
T ss_dssp TTGGGCCEEECCS-SCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEE-----EECTTCC
T ss_pred ccCCCccEEEeeC-CcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCC-----CCCCCcC
Confidence 3456899999999 45666667789999999999999999886543 88899999999999987653 2348999
Q ss_pred EEECCCCCCChHHHHhhhcCCCCcEEEccCCcCcHHHHHHhhCCCCCCEEeccCCCCChhHhHHHh-CCCCccEEEcCCC
Q 016017 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT-GLCNLKCLELSDT 310 (396)
Q Consensus 232 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~ 310 (396)
.|++++|.+....+ ..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+. .+++|+.|++++|
T Consensus 103 ~L~L~~N~l~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N 179 (487)
T 3oja_A 103 TLHAANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179 (487)
T ss_dssp EEECCSSCCCCEEE---CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred EEECcCCcCCCCCc---cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCC
Confidence 99999999876543 3568999999999999887666788899999999999999886666665 7899999999999
Q ss_pred CCCchhHHhhcCCCCCCEEeccCcccChhhhHhhhCCCCCCEeecCCCCCcHHHHHHHhcCccCCeeecCCCccChHHH
Q 016017 311 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 389 (396)
Q Consensus 311 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~l~~~~~ 389 (396)
.+++. .....+++|++|++++|.+++..+ .+..+++|+.|++++|.+++. +..+..+++|+.+++++|+++...+
T Consensus 180 ~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~l-p~~l~~l~~L~~L~l~~N~l~c~~~ 254 (487)
T 3oja_A 180 FIYDV--KGQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLI-EKALRFSQNLEHFDLRGNGFHCGTL 254 (487)
T ss_dssp CCCEE--ECCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCEE-CTTCCCCTTCCEEECTTCCBCHHHH
T ss_pred ccccc--cccccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCccc-chhhccCCCCCEEEcCCCCCcCcch
Confidence 99865 233468999999999999987544 478899999999999999974 5567888999999999999985444
No 76
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.85 E-value=2.2e-22 Score=171.94 Aligned_cols=205 Identities=21% Similarity=0.220 Sum_probs=119.7
Q ss_pred CcccEEecCCCCCccccccccccCCCCccEEEeecCCCChhHHHhccCCCCCCEEEecCCCCChhhHHHHhcCCCCCEEE
Q 016017 155 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234 (396)
Q Consensus 155 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 234 (396)
++|+.|++++ +.++......+..+++|++|++++|.+.......+..+++|+.|++++|.+....+..+..+++|++|+
T Consensus 28 ~~l~~L~ls~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 28 FSTKNLDLSF-NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp TTCCEEECTT-CCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred CCccEEECCC-CcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence 4577777776 334444444566677777777777766655555566667777777777766655445566667777777
Q ss_pred CCCCCCChHHHHhhhcCCCCcEEEccCCcCcHH-HHHHhhCCCCCCEEeccCCCCChhHhHHHhCCCCcc----EEEcCC
Q 016017 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE-CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK----CLELSD 309 (396)
Q Consensus 235 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~----~L~l~~ 309 (396)
+++|.+.......+..+++|+.|++++|.+... .+..+..+++|++|++++|.+....+..+..+++|+ .|++++
T Consensus 107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~ 186 (276)
T 2z62_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186 (276)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCS
T ss_pred CCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCC
Confidence 776665544433455666666666666655442 244556666666666666665543333333323333 566666
Q ss_pred CCCCchhHHhhcCCCCCCEEeccCcccChhhhHhhhCCCCCCEeecCCCCCc
Q 016017 310 TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 361 (396)
Q Consensus 310 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~ 361 (396)
|.++......+. ..+|++|++++|.+++.....+..+++|+.|++++|++.
T Consensus 187 n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 187 NPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp SCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred CcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 666544333332 235666666666665544444455666666666665554
No 77
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.85 E-value=1.8e-20 Score=175.99 Aligned_cols=269 Identities=18% Similarity=0.046 Sum_probs=196.4
Q ss_pred CCccEEEeecCCCChHHHHHhhCCCCCCeeeccCCcccChhHHHhhhCCCCCcEEeccCCccccHHHHHHHhCCCCCcEe
Q 016017 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136 (396)
Q Consensus 57 ~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 136 (396)
.+++.|+++++.++ ..+..+. ++|++|+++++ .+..... .+++|++|++++|.. ... +. .+++|++|
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N-~l~~lp~----~l~~L~~L~Ls~N~l-~~l-p~---~l~~L~~L 106 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDN-NLTSLPA----LPPELRTLEVSGNQL-TSL-PV---LPPGLLEL 106 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSC-CCSCCCC----CCTTCCEEEECSCCC-SCC-CC---CCTTCCEE
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCC-CCCCCCC----cCCCCCEEEcCCCcC-CcC-CC---CCCCCCEE
Confidence 46899999998887 3333332 78999999887 4553211 568899999999874 322 11 67899999
Q ss_pred cccccccccCcccccCCCCcccEEecCCCCCccccccccccCCCCccEEEeecCCCChhHHHhccCCCCCCEEEecCCCC
Q 016017 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216 (396)
Q Consensus 137 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 216 (396)
++++|.... .+. .+++|+.|+++++. ++.. +. .+++|++|++++|.++... ..+++|+.|++++|.+
T Consensus 107 ~Ls~N~l~~-l~~---~l~~L~~L~L~~N~-l~~l-p~---~l~~L~~L~Ls~N~l~~l~----~~~~~L~~L~L~~N~l 173 (622)
T 3g06_A 107 SIFSNPLTH-LPA---LPSGLCKLWIFGNQ-LTSL-PV---LPPGLQELSVSDNQLASLP----ALPSELCKLWAYNNQL 173 (622)
T ss_dssp EECSCCCCC-CCC---CCTTCCEEECCSSC-CSCC-CC---CCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCC
T ss_pred ECcCCcCCC-CCC---CCCCcCEEECCCCC-CCcC-CC---CCCCCCEEECcCCcCCCcC----CccCCCCEEECCCCCC
Confidence 999875332 222 56789999998844 4432 22 3488999999999887532 2457899999999887
Q ss_pred ChhhHHHHhcCCCCCEEECCCCCCChHHHHhhhcCCCCcEEEccCCcCcHHHHHHhhCCCCCCEEeccCCCCChhHhHHH
Q 016017 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296 (396)
Q Consensus 217 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 296 (396)
... + ..+++|+.|++++|.+.... ...++|+.|++++|.+.... ..+++|+.|++++|.+....
T Consensus 174 ~~l-~---~~~~~L~~L~Ls~N~l~~l~----~~~~~L~~L~L~~N~l~~l~----~~~~~L~~L~Ls~N~L~~lp---- 237 (622)
T 3g06_A 174 TSL-P---MLPSGLQELSVSDNQLASLP----TLPSELYKLWAYNNRLTSLP----ALPSGLKELIVSGNRLTSLP---- 237 (622)
T ss_dssp SCC-C---CCCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSSCC----CCCTTCCEEECCSSCCSCCC----
T ss_pred CCC-c---ccCCCCcEEECCCCCCCCCC----CccchhhEEECcCCcccccC----CCCCCCCEEEccCCccCcCC----
Confidence 763 2 45789999999998876422 23578999999988876432 23578999999999887532
Q ss_pred hCCCCccEEEcCCCCCCchhHHhhcCCCCCCEEeccCcccChhhhHhhhCCCCCCEeecCCCCCcHHHHHHHhcCc
Q 016017 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 372 (396)
Q Consensus 297 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~ 372 (396)
..+++|+.|++++|.++.... .+++|+.|++++|.++. ++..+..+++|+.|++++|.+.+..+..+..++
T Consensus 238 ~~l~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N~L~~-lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 238 VLPSELKELMVSGNRLTSLPM----LPSGLLSLSVYRNQLTR-LPESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCCS-CCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred CCCCcCcEEECCCCCCCcCCc----ccccCcEEeCCCCCCCc-CCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 456789999999998875332 56889999999998884 566788899999999999999988777665443
No 78
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.85 E-value=7.9e-22 Score=167.78 Aligned_cols=202 Identities=20% Similarity=0.165 Sum_probs=156.4
Q ss_pred cccEEecCCCCCccccccccccCCCCccEEEeecCCCChhHHHhccCCCCCCEEEecCCCCChhhHHHHhcCCCCCEEEC
Q 016017 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235 (396)
Q Consensus 156 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 235 (396)
+.+.+++++ ..++. .+..+ .+++++|+++++.+.......+..+++|+.|+++++.+.......+..+++|++|++
T Consensus 17 ~~~~l~~~~-~~l~~-ip~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 17 NKNSVDCSS-KKLTA-IPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTEEECTT-SCCSS-CCSCC--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCEEEccC-CCCCc-cCCCC--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 567788877 33443 22222 267899999999888776667888899999999998877655555677889999999
Q ss_pred CCCCCChHHHHhhhcCCCCcEEEccCCcCcHHHHHHhhCCCCCCEEeccCCCCChhHhHHHhCCCCccEEEcCCCCCCch
Q 016017 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 315 (396)
Q Consensus 236 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 315 (396)
++|.+.......+..+++|+.|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.++..
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 172 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV 172 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEe
Confidence 98887766666677888899999988887766555677888899999988888766555677788888888888888776
Q ss_pred hHHhhcCCCCCCEEeccCcccChhhhHhhhCCCCCCEeecCCCCCc
Q 016017 316 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 361 (396)
Q Consensus 316 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~ 361 (396)
....+..+++|++|++++|.++......+..+++|+.|++++|++.
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 173 PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 6666777888888888888887765666777888888888887653
No 79
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.85 E-value=2.3e-20 Score=175.31 Aligned_cols=266 Identities=18% Similarity=0.045 Sum_probs=205.2
Q ss_pred CCCCeeeccCCcccChhHHHhhhCCCCCcEEeccCCccccHHHHHHHhCCCCCcEecccccccccCcccccCCCCcccEE
Q 016017 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 160 (396)
Q Consensus 81 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 160 (396)
.+++.|+++++ .+... +..+. ++|++|++++|.. ... +. .+++|++|++++|... ..+. .+++|+.|
T Consensus 40 ~~l~~L~ls~n-~L~~l-p~~l~--~~L~~L~L~~N~l-~~l-p~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L 106 (622)
T 3g06_A 40 NGNAVLNVGES-GLTTL-PDCLP--AHITTLVIPDNNL-TSL-PA---LPPELRTLEVSGNQLT-SLPV---LPPGLLEL 106 (622)
T ss_dssp HCCCEEECCSS-CCSCC-CSCCC--TTCSEEEECSCCC-SCC-CC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEE
T ss_pred CCCcEEEecCC-CcCcc-ChhhC--CCCcEEEecCCCC-CCC-CC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEE
Confidence 36999999986 45532 33333 7899999999974 322 11 6789999999998643 3332 67899999
Q ss_pred ecCCCCCccccccccccCCCCccEEEeecCCCChhHHHhccCCCCCCEEEecCCCCChhhHHHHhcCCCCCEEECCCCCC
Q 016017 161 NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240 (396)
Q Consensus 161 ~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 240 (396)
+++++. ++.... .+++|+.|++++|.++... ..+++|+.|++++|.+... + ..+++|+.|++++|.+
T Consensus 107 ~Ls~N~-l~~l~~----~l~~L~~L~L~~N~l~~lp----~~l~~L~~L~Ls~N~l~~l-~---~~~~~L~~L~L~~N~l 173 (622)
T 3g06_A 107 SIFSNP-LTHLPA----LPSGLCKLWIFGNQLTSLP----VLPPGLQELSVSDNQLASL-P---ALPSELCKLWAYNNQL 173 (622)
T ss_dssp EECSCC-CCCCCC----CCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCC-C---CCCTTCCEEECCSSCC
T ss_pred ECcCCc-CCCCCC----CCCCcCEEECCCCCCCcCC----CCCCCCCEEECcCCcCCCc-C---CccCCCCEEECCCCCC
Confidence 999854 443222 5689999999999887633 2358999999999987653 2 2458899999999987
Q ss_pred ChHHHHhhhcCCCCcEEEccCCcCcHHHHHHhhCCCCCCEEeccCCCCChhHhHHHhCCCCccEEEcCCCCCCchhHHhh
Q 016017 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 320 (396)
Q Consensus 241 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l 320 (396)
.... ..+++|+.|++++|.+... + ..+++|+.|++.+|.+.... ..+++|+.|++++|.++...
T Consensus 174 ~~l~----~~~~~L~~L~Ls~N~l~~l-~---~~~~~L~~L~L~~N~l~~l~----~~~~~L~~L~Ls~N~L~~lp---- 237 (622)
T 3g06_A 174 TSLP----MLPSGLQELSVSDNQLASL-P---TLPSELYKLWAYNNRLTSLP----ALPSGLKELIVSGNRLTSLP---- 237 (622)
T ss_dssp SCCC----CCCTTCCEEECCSSCCSCC-C---CCCTTCCEEECCSSCCSSCC----CCCTTCCEEECCSSCCSCCC----
T ss_pred CCCc----ccCCCCcEEECCCCCCCCC-C---CccchhhEEECcCCcccccC----CCCCCCCEEEccCCccCcCC----
Confidence 7533 4578999999999988753 2 24589999999999887532 23479999999999987643
Q ss_pred cCCCCCCEEeccCcccChhhhHhhhCCCCCCEeecCCCCCcHHHHHHHhcCccCCeeecCCCccChHHHHHHH
Q 016017 321 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393 (396)
Q Consensus 321 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~l~~~~~~~l~ 393 (396)
..+++|++|++++|.++.. +. .+++|+.|++++|.++.. +..+.++++|+.|++++|++++.....+.
T Consensus 238 ~~l~~L~~L~Ls~N~L~~l-p~---~~~~L~~L~Ls~N~L~~l-p~~l~~l~~L~~L~L~~N~l~~~~~~~l~ 305 (622)
T 3g06_A 238 VLPSELKELMVSGNRLTSL-PM---LPSGLLSLSVYRNQLTRL-PESLIHLSSETTVNLEGNPLSERTLQALR 305 (622)
T ss_dssp CCCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCCSC-CGGGGGSCTTCEEECCSCCCCHHHHHHHH
T ss_pred CCCCcCcEEECCCCCCCcC-Cc---ccccCcEEeCCCCCCCcC-CHHHhhccccCEEEecCCCCCCcCHHHHH
Confidence 5679999999999988863 32 578999999999999955 66789999999999999999998877654
No 80
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.84 E-value=2.6e-21 Score=176.37 Aligned_cols=305 Identities=17% Similarity=0.048 Sum_probs=173.0
Q ss_pred CceeEeccCCCCCCCchHHHHHHhcCCCccEEEeecCCCChHHHHHhhCCCC-------------CCeeeccCCcccChh
Q 016017 31 CALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSN-------------LQSLDFNFCIQISDG 97 (396)
Q Consensus 31 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~-------------L~~L~l~~~~~~~~~ 97 (396)
..++++.+.++. + . .+..-...+++|++|+++++.+++..+..++++.+ +++|+++++ .+...
T Consensus 11 ~~L~~L~l~~n~-l-~-~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~-~l~~l 86 (454)
T 1jl5_A 11 TFLQEPLRHSSN-L-T-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNL-GLSSL 86 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTS-CCSCC
T ss_pred ccchhhhcccCc-h-h-hCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCC-ccccC
Confidence 345556555542 2 1 11212245667777777766555444444444433 467777665 33331
Q ss_pred HHHhhhCCCCCcEEeccCCccccHHHHHHHhCCCCCcEecccccccccCcccccCCC-CcccEEecCCCCCccccccccc
Q 016017 98 GLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGL-MKLESLNIKWCNCITDSDMKPL 176 (396)
Q Consensus 98 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~l 176 (396)
. . -.++|++|++++|.... . + ...++|++|++++|.... +... ++|++|+++++. ++. .+ .+
T Consensus 87 p-~---~~~~L~~L~l~~n~l~~-l-p---~~~~~L~~L~l~~n~l~~-----l~~~~~~L~~L~L~~n~-l~~-lp-~~ 149 (454)
T 1jl5_A 87 P-E---LPPHLESLVASCNSLTE-L-P---ELPQSLKSLLVDNNNLKA-----LSDLPPLLEYLGVSNNQ-LEK-LP-EL 149 (454)
T ss_dssp C-S---CCTTCSEEECCSSCCSS-C-C---CCCTTCCEEECCSSCCSC-----CCSCCTTCCEEECCSSC-CSS-CC-CC
T ss_pred C-C---CcCCCCEEEccCCcCCc-c-c---cccCCCcEEECCCCccCc-----ccCCCCCCCEEECcCCC-CCC-Cc-cc
Confidence 1 0 12567778777776422 1 1 134678888887764321 1122 578888888743 343 22 57
Q ss_pred cCCCCccEEEeecCCCChhHHHhccCCCCCCEEEecCCCCChhhHHHHhcCCCCCEEECCCCCCChHHHHhhhcCCCCcE
Q 016017 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 256 (396)
Q Consensus 177 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 256 (396)
..+++|++|++++|.++... ...++|+.|++++|.+... + .+..+++|+.|++++|.+.... ...++|+.
T Consensus 150 ~~l~~L~~L~l~~N~l~~lp----~~~~~L~~L~L~~n~l~~l-~-~~~~l~~L~~L~l~~N~l~~l~----~~~~~L~~ 219 (454)
T 1jl5_A 150 QNSSFLKIIDVDNNSLKKLP----DLPPSLEFIAAGNNQLEEL-P-ELQNLPFLTAIYADNNSLKKLP----DLPLSLES 219 (454)
T ss_dssp TTCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSSC-C-CCTTCTTCCEEECCSSCCSSCC----CCCTTCCE
T ss_pred CCCCCCCEEECCCCcCcccC----CCcccccEEECcCCcCCcC-c-cccCCCCCCEEECCCCcCCcCC----CCcCcccE
Confidence 78888888888888776421 1235888888888877663 3 4677888888888888765421 12357888
Q ss_pred EEccCCcCcHHHHHHhhCCCCCCEEeccCCCCChhHhHHHhCCCCccEEEcCCCCCCchhHHhhcCCCCCCEEeccCccc
Q 016017 257 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 336 (396)
Q Consensus 257 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 336 (396)
|++++|.+... + .+..+++|++|++++|.+.... . ..++|+.|++++|.+++.. ..+++|++|++++|.+
T Consensus 220 L~l~~n~l~~l-p-~~~~l~~L~~L~l~~N~l~~l~-~---~~~~L~~L~l~~N~l~~l~----~~~~~L~~L~ls~N~l 289 (454)
T 1jl5_A 220 IVAGNNILEEL-P-ELQNLPFLTTIYADNNLLKTLP-D---LPPSLEALNVRDNYLTDLP----ELPQSLTFLDVSENIF 289 (454)
T ss_dssp EECCSSCCSSC-C-CCTTCTTCCEEECCSSCCSSCC-S---CCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCC
T ss_pred EECcCCcCCcc-c-ccCCCCCCCEEECCCCcCCccc-c---cccccCEEECCCCcccccC----cccCcCCEEECcCCcc
Confidence 88888877643 3 3678888899999888776422 1 2468888888888876521 1247788888888877
Q ss_pred ChhhhHhhhCCCCCCEeecCCCCCcHHHHHHHhcC-ccCCeeecCCCccC
Q 016017 337 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL-TGLTHLDLFGARIT 385 (396)
Q Consensus 337 ~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~-~~L~~l~l~~~~l~ 385 (396)
++.. . ..++|+.|++++|.+.+. ..+ ++|++|++++|+++
T Consensus 290 ~~l~--~--~~~~L~~L~l~~N~l~~i-----~~~~~~L~~L~Ls~N~l~ 330 (454)
T 1jl5_A 290 SGLS--E--LPPNLYYLNASSNEIRSL-----CDLPPSLEELNVSNNKLI 330 (454)
T ss_dssp SEES--C--CCTTCCEEECCSSCCSEE-----CCCCTTCCEEECCSSCCS
T ss_pred Cccc--C--cCCcCCEEECcCCcCCcc-----cCCcCcCCEEECCCCccc
Confidence 6521 0 114555566655555431 122 24555555555444
No 81
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.84 E-value=1.3e-20 Score=160.29 Aligned_cols=202 Identities=21% Similarity=0.213 Sum_probs=158.7
Q ss_pred CCcEecccccccccCcccccCCCCcccEEecCCCCCccccccccccCCCCccEEEeecCCCChhHHHhccCCCCCCEEEe
Q 016017 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211 (396)
Q Consensus 132 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 211 (396)
+.++++++++. ....+..+. ++++.|+++++ .++......+..+++|++|++++|.++......+..+++|+.|++
T Consensus 17 ~~~~l~~~~~~-l~~ip~~~~--~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 17 NKNSVDCSSKK-LTAIPSNIP--ADTKKLDLQSN-KLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTEEECTTSC-CSSCCSCCC--TTCSEEECCSS-CCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCEEEccCCC-CCccCCCCC--CCCCEEECcCC-CCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 46778887753 223333232 57899999884 455555667888899999999999888766666788899999999
Q ss_pred cCCCCChhhHHHHhcCCCCCEEECCCCCCChHHHHhhhcCCCCcEEEccCCcCcHHHHHHhhCCCCCCEEeccCCCCChh
Q 016017 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291 (396)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 291 (396)
+++.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+...
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 172 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV 172 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEe
Confidence 99888776556677889999999999888776666778889999999999888765555577889999999999988776
Q ss_pred HhHHHhCCCCccEEEcCCCCCCchhHHhhcCCCCCCEEeccCcccC
Q 016017 292 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 337 (396)
Q Consensus 292 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 337 (396)
.+..+..+++|++|++++|.++......+..+++|+.|++++|.+.
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 173 PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 6666778889999999999888766666778899999999988664
No 82
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.83 E-value=2.6e-21 Score=164.67 Aligned_cols=209 Identities=23% Similarity=0.181 Sum_probs=139.6
Q ss_pred cCCCCcccEEecCCCCCccccccccccCCCCccEEEeecCCCChhHHHhccCCCCCCEEEecCCCCChhhHHHHhcCCCC
Q 016017 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230 (396)
Q Consensus 151 l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 230 (396)
...+++|+.|++.++. +. ....+..+++|++|++++|.+... ..+..+++|+.|++++|.+....+..+..+++|
T Consensus 37 ~~~l~~L~~L~l~~~~-i~--~~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 111 (272)
T 3rfs_A 37 QNELNSIDQIIANNSD-IK--SVQGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNL 111 (272)
T ss_dssp HHHHTTCCEEECTTSC-CC--CCTTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred cccccceeeeeeCCCC-cc--cccccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCC
Confidence 4556778888887743 33 234466778888888888877653 356777788888888877766555556677777
Q ss_pred CEEECCCCCCChHHHHhhhcCCCCcEEEccCCcCcHHHHHHhhCCCCCCEEeccCCCCChhHhHHHhCCCCccEEEcCCC
Q 016017 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 310 (396)
Q Consensus 231 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 310 (396)
++|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|++|++++|
T Consensus 112 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N 191 (272)
T 3rfs_A 112 KELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN 191 (272)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCC
Confidence 88887777766555555667777777777777666554444566777777777777766555555566777777777777
Q ss_pred CCCchhHHhhcCCCCCCEEeccCcccChhhhHhhhCCCCCCEeecCCCCCcHHHHHHHhcC
Q 016017 311 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 371 (396)
Q Consensus 311 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~ 371 (396)
.+++.....+..+++|++|++++|.+. +.+++|+.+++..|.+.+..+..++.+
T Consensus 192 ~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~l~~~~n~~~g~ip~~~~~~ 245 (272)
T 3rfs_A 192 QLKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRNSAGSV 245 (272)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCBC-------CCTTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred cCCccCHHHHhCCcCCCEEEccCCCcc-------ccCcHHHHHHHHHHhCCCcccCccccc
Confidence 776655555666777777777777554 335666666666666655444444433
No 83
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.83 E-value=5e-21 Score=163.54 Aligned_cols=203 Identities=22% Similarity=0.188 Sum_probs=85.1
Q ss_pred CCcEecccccccccCcccccCCCCcccEEecCCCCCccccccccccCCCCccEEEeecCCCChhHHHhccCCCCCCEEEe
Q 016017 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211 (396)
Q Consensus 132 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 211 (396)
+|++|++++|.........+..+++|+.|+++++ .++......+..+++|++|++++|.+....+..+..+++|+.|++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 3445555444332222223444445555555442 233333333444445555555554444443334444445555555
Q ss_pred cCCCCChhhHHHHhcCCCCCEEECCCCCCChH-HHHhhhcCCCCcEEEccCCcCcHHHHHHhhCCCCCC----EEeccCC
Q 016017 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDD-GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE----SLNLDSC 286 (396)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~----~L~l~~~ 286 (396)
+++.+.......+..+++|+.|++++|.+... .+..+..+++|+.|++++|.+....+..+..+++|+ +|++++|
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 44444332222334444555555554444332 133344444555555554444332222222222222 4444444
Q ss_pred CCChhHhHHHhCCCCccEEEcCCCCCCchhHHhhcCCCCCCEEeccCccc
Q 016017 287 GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 336 (396)
Q Consensus 287 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 336 (396)
.+....+..+ ...+|+.|++++|.++......+..+++|++|++++|.+
T Consensus 188 ~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 236 (276)
T 2z62_A 188 PMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 236 (276)
T ss_dssp CCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCB
T ss_pred cccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCcc
Confidence 4443222222 122445555555544443333334444555555554443
No 84
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.83 E-value=2.1e-20 Score=161.83 Aligned_cols=195 Identities=31% Similarity=0.412 Sum_probs=146.7
Q ss_pred cCCCCcccEEecCCCCCccccccccccCCCCccEEEeecCCCChhHHHhccCCCCCCEEEecCCCCChhhHHHHhcCCCC
Q 016017 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230 (396)
Q Consensus 151 l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 230 (396)
...+++|+.|++.++. +.. ...+..+++|++|++++|.+..... +..+++|+.|++++|.+... ..+..+++|
T Consensus 37 ~~~l~~L~~L~l~~~~-i~~--l~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L 109 (308)
T 1h6u_A 37 QADLDGITTLSAFGTG-VTT--IEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSI 109 (308)
T ss_dssp HHHHHTCCEEECTTSC-CCC--CTTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTC
T ss_pred HHHcCCcCEEEeeCCC-ccC--chhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCC
Confidence 4557888999998854 332 2357778889999999888876544 78888899999988877663 357778888
Q ss_pred CEEECCCCCCChHHHHhhhcCCCCcEEEccCCcCcHHHHHHhhCCCCCCEEeccCCCCChhHhHHHhCCCCccEEEcCCC
Q 016017 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 310 (396)
Q Consensus 231 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 310 (396)
+.|++++|.+.... .+..+++|+.|++++|.+....+ +..+++|+.|++++|.+.+..+ +..+++|+.|++++|
T Consensus 110 ~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n 183 (308)
T 1h6u_A 110 KTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDN 183 (308)
T ss_dssp CEEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred CEEECCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCC
Confidence 88888888876543 37778888888888887765432 6778888888888887775443 677888888888888
Q ss_pred CCCchhHHhhcCCCCCCEEeccCcccChhhhHhhhCCCCCCEeecCCCCCcH
Q 016017 311 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362 (396)
Q Consensus 311 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~ 362 (396)
.+++... +..+++|++|++++|.+++.. .+..+++|+.|++++|+++.
T Consensus 184 ~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 184 KISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred ccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 8766443 667888888888888877644 36778888888888887765
No 85
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.82 E-value=2.6e-21 Score=167.99 Aligned_cols=204 Identities=19% Similarity=0.194 Sum_probs=141.1
Q ss_pred CCCccEEEeecCCCChhHHHhc--cCCCCCCEEEecCCCCChhh----HHHHhcCCCCCEEECCCCCCChHHHHhhhcCC
Q 016017 179 LTNLKSLQISCSKVTDSGIAYL--KGLQKLTLLNLEGCPVTAAC----LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG 252 (396)
Q Consensus 179 ~~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~ 252 (396)
+++|++|++++|.+....+..+ ..+++|+.|++++|.+.... ...+..+++|++|++++|.+....+..+..++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 3557777777776665555444 66677777777777665421 12334677788888877777666566677778
Q ss_pred CCcEEEccCCcCcHHH--H--HHhhCCCCCCEEeccCCCCChhHh--H-HHhCCCCccEEEcCCCCCCchhHHhhcCC--
Q 016017 253 SLKVLNLGFNEITDEC--L--VHLKGLTNLESLNLDSCGIGDEGL--V-NLTGLCNLKCLELSDTQVGSSGLRHLSGL-- 323 (396)
Q Consensus 253 ~L~~L~l~~~~~~~~~--~--~~l~~~~~L~~L~l~~~~~~~~~~--~-~~~~~~~L~~L~l~~~~~~~~~~~~l~~~-- 323 (396)
+|++|++++|.+.+.. + ..+..+++|++|++++|.+..... . .+..+++|++|++++|.+++..+..+..+
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~ 249 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMW 249 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccC
Confidence 8888888888765421 1 112567888888888888764322 1 24567888888888888876644444444
Q ss_pred -CCCCEEeccCcccChhhhHhhhCCCCCCEeecCCCCCcHHHHHHHhcCccCCeeecCCCccChH
Q 016017 324 -TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 387 (396)
Q Consensus 324 -~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~l~~~ 387 (396)
++|++|++++|.++. .+..+ .++|+.|++++|++++. ..+..+++|+.|++++|++++.
T Consensus 250 ~~~L~~L~Ls~N~l~~-lp~~~--~~~L~~L~Ls~N~l~~~--~~~~~l~~L~~L~L~~N~l~~~ 309 (310)
T 4glp_A 250 SSALNSLNLSFAGLEQ-VPKGL--PAKLRVLDLSSNRLNRA--PQPDELPEVDNLTLDGNPFLVP 309 (310)
T ss_dssp CTTCCCEECCSSCCCS-CCSCC--CSCCSCEECCSCCCCSC--CCTTSCCCCSCEECSSTTTSCC
T ss_pred cCcCCEEECCCCCCCc-hhhhh--cCCCCEEECCCCcCCCC--chhhhCCCccEEECcCCCCCCC
Confidence 789999999998884 34444 37899999999998864 2257789999999999998764
No 86
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.82 E-value=1.5e-20 Score=161.16 Aligned_cols=203 Identities=23% Similarity=0.177 Sum_probs=145.0
Q ss_pred cCCCCcccEEecCCCCCccccccccccCCCCccEEEeecCCCChhHHHhccCCCCCCEEEecCCCCChhhHHHHhcCCCC
Q 016017 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230 (396)
Q Consensus 151 l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 230 (396)
+.++++++++++.+ ..++.. +..+ .++++.|++++|.++...+..+..+++|+.|+++++.+..... ...+++|
T Consensus 6 ~~~l~~l~~l~~~~-~~l~~i-p~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L 79 (290)
T 1p9a_G 6 VSKVASHLEVNCDK-RNLTAL-PPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVL 79 (290)
T ss_dssp EECSTTCCEEECTT-SCCSSC-CSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTC
T ss_pred ccccCCccEEECCC-CCCCcC-CCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcC
Confidence 56678888888887 334432 2222 2678888888888887777778888888888888887765322 2567888
Q ss_pred CEEECCCCCCChHHHHhhhcCCCCcEEEccCCcCcHHHHHHhhCCCCCCEEeccCCCCChhHhHHHhCCCCccEEEcCCC
Q 016017 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 310 (396)
Q Consensus 231 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 310 (396)
+.|++++|.+... +..+..+++|+.|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|
T Consensus 80 ~~L~Ls~N~l~~l-~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 80 GTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp CEEECCSSCCSSC-CCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CEEECCCCcCCcC-chhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence 8888888876633 334566778888888888776654456677788888888888777655555667778888888888
Q ss_pred CCCchhHHhhcCCCCCCEEeccCcccChhhhHhhhCCCCCCEeecCCCCCc
Q 016017 311 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 361 (396)
Q Consensus 311 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~ 361 (396)
+++......+..+++|++|++++|.++. .+..+...++|+.+++.+|++.
T Consensus 159 ~l~~l~~~~~~~l~~L~~L~L~~N~l~~-ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 159 NLTELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCCCSEEECCSCCBC
T ss_pred cCCccCHHHhcCcCCCCEEECCCCcCCc-cChhhcccccCCeEEeCCCCcc
Confidence 7776555556677788888888887764 4555556677888888777654
No 87
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.81 E-value=6.6e-21 Score=162.20 Aligned_cols=210 Identities=18% Similarity=0.154 Sum_probs=166.4
Q ss_pred hCCCCCcEecccccccccCcccccCCCCcccEEecCCCCCccccccccccCCCCccEEEeecCCCChhHHHhccCCCCCC
Q 016017 128 AGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 207 (396)
Q Consensus 128 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 207 (396)
..+++|++|+++++... ....+..+++|+.|+++++. ++. ...+..+++|++|++++|.++......+..+++|+
T Consensus 38 ~~l~~L~~L~l~~~~i~--~~~~l~~l~~L~~L~l~~n~-l~~--~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIK--SVQGIQYLPNVRYLALGGNK-LHD--ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HHHTTCCEEECTTSCCC--CCTTGGGCTTCCEEECTTSC-CCC--CGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred ccccceeeeeeCCCCcc--cccccccCCCCcEEECCCCC-CCC--chhhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 45688999999886532 23457788999999998854 443 34677889999999999988877666678889999
Q ss_pred EEEecCCCCChhhHHHHhcCCCCCEEECCCCCCChHHHHhhhcCCCCcEEEccCCcCcHHHHHHhhCCCCCCEEeccCCC
Q 016017 208 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287 (396)
Q Consensus 208 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 287 (396)
.|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 192 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ 192 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc
Confidence 99999998877656667788999999999998876666667888999999999998876655567788999999999998
Q ss_pred CChhHhHHHhCCCCccEEEcCCCCCCchhHHhhcCCCCCCEEeccCcccChhhhHhhhCCCC
Q 016017 288 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 349 (396)
Q Consensus 288 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 349 (396)
+.+..+..+..+++|+.|++++|.+.. .|++|+.+++..|.+++..+..++.++.
T Consensus 193 l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 193 LKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred CCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccCcccccCC
Confidence 887666667888999999999987653 5788898988888888777776665443
No 88
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.80 E-value=5e-19 Score=153.21 Aligned_cols=193 Identities=25% Similarity=0.321 Sum_probs=157.5
Q ss_pred CCCCCcEecccccccccCcccccCCCCcccEEecCCCCCccccccccccCCCCccEEEeecCCCChhHHHhccCCCCCCE
Q 016017 129 GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTL 208 (396)
Q Consensus 129 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 208 (396)
.+++|++|++++|.... ...+..+++|+.|+++++. ++.... +..+++|++|++++|.+... ..+..+++|+.
T Consensus 39 ~l~~L~~L~l~~~~i~~--l~~~~~l~~L~~L~L~~n~-i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~ 111 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTT--IEGVQYLNNLIGLELKDNQ-ITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKT 111 (308)
T ss_dssp HHHTCCEEECTTSCCCC--CTTGGGCTTCCEEECCSSC-CCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCE
T ss_pred HcCCcCEEEeeCCCccC--chhhhccCCCCEEEccCCc-CCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCE
Confidence 46789999999875432 2357889999999999854 443332 88899999999999988864 36888999999
Q ss_pred EEecCCCCChhhHHHHhcCCCCCEEECCCCCCChHHHHhhhcCCCCcEEEccCCcCcHHHHHHhhCCCCCCEEeccCCCC
Q 016017 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 288 (396)
Q Consensus 209 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 288 (396)
|++++|.+.... .+..+++|+.|++++|.+....+ +..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+
T Consensus 112 L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l 185 (308)
T 1h6u_A 112 LDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKI 185 (308)
T ss_dssp EECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EECCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCcc
Confidence 999999887642 37889999999999998876543 7889999999999998876433 78899999999999988
Q ss_pred ChhHhHHHhCCCCccEEEcCCCCCCchhHHhhcCCCCCCEEeccCcccCh
Q 016017 289 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338 (396)
Q Consensus 289 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 338 (396)
.+..+ +..+++|++|++++|.+++.. .+..+++|+.|++++|.++.
T Consensus 186 ~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 186 SDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred CcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 76543 778899999999999998765 47889999999999998765
No 89
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.79 E-value=2.6e-19 Score=153.50 Aligned_cols=203 Identities=18% Similarity=0.118 Sum_probs=163.3
Q ss_pred HhCCCCCcEecccccccccCcccccCCCCcccEEecCCCCCccccccccccCCCCccEEEeecCCCChhHHHhccCCCCC
Q 016017 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206 (396)
Q Consensus 127 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 206 (396)
+.+++++++++++++. ....+..+ .++++.|++++ +.++......+..+++|++|++++|.++.... ...+++|
T Consensus 6 ~~~l~~l~~l~~~~~~-l~~ip~~~--~~~l~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L 79 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRN-LTALPPDL--PKDTTILHLSE-NLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVL 79 (290)
T ss_dssp EECSTTCCEEECTTSC-CSSCCSCC--CTTCCEEECTT-SCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTC
T ss_pred ccccCCccEEECCCCC-CCcCCCCC--CCCCCEEEcCC-CcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcC
Confidence 4567899999998854 33443333 26899999998 45666667788899999999999998886432 3678999
Q ss_pred CEEEecCCCCChhhHHHHhcCCCCCEEECCCCCCChHHHHhhhcCCCCcEEEccCCcCcHHHHHHhhCCCCCCEEeccCC
Q 016017 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 286 (396)
Q Consensus 207 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 286 (396)
+.|+++++.+.. .+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|
T Consensus 80 ~~L~Ls~N~l~~-l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 80 GTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp CEEECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CEEECCCCcCCc-CchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence 999999998875 3455678899999999999988776677889999999999999887765666788899999999999
Q ss_pred CCChhHhHHHhCCCCccEEEcCCCCCCchhHHhhcCCCCCCEEeccCcccC
Q 016017 287 GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 337 (396)
Q Consensus 287 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 337 (396)
.+.......+..+++|+.|++++|.++.. +..+..+++|+.+++.+|.+.
T Consensus 159 ~l~~l~~~~~~~l~~L~~L~L~~N~l~~i-p~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 159 NLTELPAGLLNGLENLDTLLLQENSLYTI-PKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCCCSEEECCSCCBC
T ss_pred cCCccCHHHhcCcCCCCEEECCCCcCCcc-ChhhcccccCCeEEeCCCCcc
Confidence 98876666677889999999999998754 334456789999999998765
No 90
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.78 E-value=2.5e-19 Score=155.56 Aligned_cols=227 Identities=15% Similarity=0.067 Sum_probs=123.6
Q ss_pred CCCCcEEeccCCccccHHHHHH---HhCCCCCcEecccccccccCccccc--CCCCcccEEecCCCCCccccccccccCC
Q 016017 105 LSNLTSLSFRRNNAITAQGMKA---FAGLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGL 179 (396)
Q Consensus 105 ~~~L~~L~l~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~l--~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 179 (396)
...++.+.+.++.. ....... ...+++|++|++++|......+..+ ..+++|++|++++
T Consensus 63 ~~~l~~l~l~~~~~-~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~--------------- 126 (310)
T 4glp_A 63 ALRVRRLTVGAAQV-PAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRN--------------- 126 (310)
T ss_dssp SCCCCEEEECSCCC-BHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEES---------------
T ss_pred hcceeEEEEeCCcC-CHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeec---------------
Confidence 34577888877663 3222221 2234567777777765443333333 4455555555554
Q ss_pred CCccEEEeecCCCChh----HHHhccCCCCCCEEEecCCCCChhhHHHHhcCCCCCEEECCCCCCChHHH----HhhhcC
Q 016017 180 TNLKSLQISCSKVTDS----GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC----EKFSKI 251 (396)
Q Consensus 180 ~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~l~~~ 251 (396)
|.+... ....+..+++|+.|++++|.+....+..+..+++|++|++++|.+..... ..+..+
T Consensus 127 ----------n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l 196 (310)
T 4glp_A 127 ----------VSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKF 196 (310)
T ss_dssp ----------CCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSS
T ss_pred ----------ccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcC
Confidence 433321 11222344455555555554444333344445555555555554432110 112355
Q ss_pred CCCcEEEccCCcCcHHH--HH-HhhCCCCCCEEeccCCCCChhHhHHHhCC---CCccEEEcCCCCCCchhHHhhcCCCC
Q 016017 252 GSLKVLNLGFNEITDEC--LV-HLKGLTNLESLNLDSCGIGDEGLVNLTGL---CNLKCLELSDTQVGSSGLRHLSGLTN 325 (396)
Q Consensus 252 ~~L~~L~l~~~~~~~~~--~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~~~~~~l~~~~~ 325 (396)
++|++|++++|.+.... +. .+..+++|++|++++|.+.+..+..+..+ ++|++|++++|.++.. +..+ +++
T Consensus 197 ~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~l-p~~~--~~~ 273 (310)
T 4glp_A 197 PAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQV-PKGL--PAK 273 (310)
T ss_dssp CCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSC-CSCC--CSC
T ss_pred CCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCch-hhhh--cCC
Confidence 66666666666664221 11 23566777777777777665444444444 5778888887777632 2222 368
Q ss_pred CCEEeccCcccChhhhHhhhCCCCCCEeecCCCCCcH
Q 016017 326 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362 (396)
Q Consensus 326 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~ 362 (396)
|++|++++|.+++. ..+..+++|+.|++++|++++
T Consensus 274 L~~L~Ls~N~l~~~--~~~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 274 LRVLDLSSNRLNRA--PQPDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CSCEECCSCCCCSC--CCTTSCCCCSCEECSSTTTSC
T ss_pred CCEEECCCCcCCCC--chhhhCCCccEEECcCCCCCC
Confidence 88888888877763 224667888888888887764
No 91
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.78 E-value=3.4e-20 Score=154.76 Aligned_cols=196 Identities=14% Similarity=0.130 Sum_probs=111.1
Q ss_pred CccEEEeecCCCChhHHHhccCCCCCCEEEecCCC-CChhhHHHHhcCCCCCEEECCC-CCCChHHHHhhhcCCCCcEEE
Q 016017 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNR-CQLSDDGCEKFSKIGSLKVLN 258 (396)
Q Consensus 181 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~ 258 (396)
++++|++++|.++......+..+++|+.|+++++. +....+..+..+++|+.|++++ +.+....+..+..+++|+.|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 45555555555554444445555555555555554 4433333445555555555555 554444444455566666666
Q ss_pred ccCCcCcHHHHHHhhCCCCCC---EEeccCC-CCChhHhHHHhCCCCcc-EEEcCCCCCCchhHHhhcCCCCCCEEeccC
Q 016017 259 LGFNEITDECLVHLKGLTNLE---SLNLDSC-GIGDEGLVNLTGLCNLK-CLELSDTQVGSSGLRHLSGLTNLESINLSF 333 (396)
Q Consensus 259 l~~~~~~~~~~~~l~~~~~L~---~L~l~~~-~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 333 (396)
+++|.+... +. +..+++|+ .|++++| .+....+..+..+++|+ .|++++|+++......+.. ++|++|++++
T Consensus 112 l~~n~l~~l-p~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~ 188 (239)
T 2xwt_C 112 IFNTGLKMF-PD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNK 188 (239)
T ss_dssp EEEECCCSC-CC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTT
T ss_pred CCCCCCccc-cc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCC
Confidence 666555442 22 45555555 6666666 55554444556666777 7777776665443333333 6677777777
Q ss_pred cc-cChhhhHhhhCC-CCCCEeecCCCCCcHHHHHHHhcCccCCeeecCCC
Q 016017 334 TG-ISDGSLRKLAGL-SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 382 (396)
Q Consensus 334 ~~-~~~~~~~~l~~~-~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~ 382 (396)
|. ++...+..+..+ ++|+.|++++|+++..... .+++|+.|++.++
T Consensus 189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp CTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred CCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence 73 665545556666 7777777777766654222 4566777776665
No 92
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.78 E-value=1.4e-19 Score=152.05 Aligned_cols=180 Identities=21% Similarity=0.218 Sum_probs=121.2
Q ss_pred CCccEEEeecCCCChhHHHhccCCCCCCEEEecCCCCChhhHHHHhcCCCCCEEECCCCCCChHHHHhhhcCCCCcEEEc
Q 016017 180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 259 (396)
Q Consensus 180 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 259 (396)
.+.++++++++.++..+ ..+ .++++.|+++++.+....+..+..+++|++|++++|.+....+..+..+++|+.|++
T Consensus 14 ~~~~~l~~~~~~l~~~p-~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVP-SGI--PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCSSCC-SCC--CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCccccC-CCC--CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 34566777777666432 112 257778888877776655556677777888888777776655556677777777777
Q ss_pred cCCcCcHHHHHHhhCCCCCCEEeccCCCCChhHhHHHhCCCCccEEEcCCCCCCchhHHhhcCCCCCCEEeccCcccChh
Q 016017 260 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339 (396)
Q Consensus 260 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 339 (396)
++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.++......+..+++|++|++++|.++..
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence 77776655445566777777777777777655555556677777777777777665555566677777777777777665
Q ss_pred hhHhhhCCCCCCEeecCCCCCcH
Q 016017 340 SLRKLAGLSSLKSLNLDARQITD 362 (396)
Q Consensus 340 ~~~~l~~~~~L~~L~l~~~~l~~ 362 (396)
.+..+..+++|+.|++++|++..
T Consensus 171 ~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 171 PHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp CTTTTTTCTTCCEEECCSCCBCT
T ss_pred CHHHHhCCCCCCEEEeeCCceeC
Confidence 55556667777777777776653
No 93
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.77 E-value=3.3e-19 Score=148.77 Aligned_cols=196 Identities=19% Similarity=0.217 Sum_probs=125.7
Q ss_pred cccEEecCCCCCccccccccccCCCCccEEEeecCC-CChhHHHhccCCCCCCEEEecC-CCCChhhHHHHhcCCCCCEE
Q 016017 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK-VTDSGIAYLKGLQKLTLLNLEG-CPVTAACLDSLSALGSLFYL 233 (396)
Q Consensus 156 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L 233 (396)
+++.|++++ +.++......+..+++|++|++++|. ++......+..+++|+.|++++ +.+....+..+..+++|+.|
T Consensus 32 ~l~~L~l~~-n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIE-THLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEES-CCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred cccEEEEeC-CcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 556666655 33444444455566666666666664 5554444556666666666665 55554434445566666666
Q ss_pred ECCCCCCChHHHHhhhcCCCCc---EEEccCC-cCcHHHHHHhhCCCCCC-EEeccCCCCChhHhHHHhCCCCccEEEcC
Q 016017 234 NLNRCQLSDDGCEKFSKIGSLK---VLNLGFN-EITDECLVHLKGLTNLE-SLNLDSCGIGDEGLVNLTGLCNLKCLELS 308 (396)
Q Consensus 234 ~l~~~~~~~~~~~~l~~~~~L~---~L~l~~~-~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 308 (396)
++++|.+.... . +..+++|+ .|++++| .+....+..+..+++|+ .|++++|.+.......+.. ++|+.|+++
T Consensus 111 ~l~~n~l~~lp-~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~ 187 (239)
T 2xwt_C 111 GIFNTGLKMFP-D-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLN 187 (239)
T ss_dssp EEEEECCCSCC-C-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECT
T ss_pred eCCCCCCcccc-c-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcC
Confidence 66666554422 1 55556666 7777777 66655444567778888 8888888776444434444 688888888
Q ss_pred CCC-CCchhHHhhcCC-CCCCEEeccCcccChhhhHhhhCCCCCCEeecCCC
Q 016017 309 DTQ-VGSSGLRHLSGL-TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358 (396)
Q Consensus 309 ~~~-~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 358 (396)
+|. ++......+..+ ++|++|++++|.++..... .+++|+.|+++++
T Consensus 188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp TCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred CCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence 884 776666667777 8888888888887753222 5678888888775
No 94
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.75 E-value=1.2e-18 Score=146.31 Aligned_cols=181 Identities=22% Similarity=0.210 Sum_probs=148.3
Q ss_pred CcccEEecCCCCCccccccccccCCCCccEEEeecCCCChhHHHhccCCCCCCEEEecCCCCChhhHHHHhcCCCCCEEE
Q 016017 155 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234 (396)
Q Consensus 155 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 234 (396)
.+.+.+++.+ ..++. .+..+. ++++.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|+
T Consensus 14 ~~~~~l~~~~-~~l~~-~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 89 (251)
T 3m19_A 14 EGKKEVDCQG-KSLDS-VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLG 89 (251)
T ss_dssp GGGTEEECTT-CCCSS-CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCeEEecCC-CCccc-cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEE
Confidence 3567788876 33332 223332 6899999999998887777788999999999999988876666778899999999
Q ss_pred CCCCCCChHHHHhhhcCCCCcEEEccCCcCcHHHHHHhhCCCCCCEEeccCCCCChhHhHHHhCCCCccEEEcCCCCCCc
Q 016017 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 314 (396)
Q Consensus 235 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 314 (396)
+++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|++|++++|.++.
T Consensus 90 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 169 (251)
T 3m19_A 90 LANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS 169 (251)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCc
Confidence 99999887766778889999999999998876655567888999999999999887666678888999999999999987
Q ss_pred hhHHhhcCCCCCCEEeccCcccChh
Q 016017 315 SGLRHLSGLTNLESINLSFTGISDG 339 (396)
Q Consensus 315 ~~~~~l~~~~~L~~L~l~~~~~~~~ 339 (396)
.....+..+++|++|++++|.+...
T Consensus 170 ~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 170 VPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred cCHHHHhCCCCCCEEEeeCCceeCC
Confidence 7777788899999999999987653
No 95
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.72 E-value=1.2e-17 Score=143.26 Aligned_cols=174 Identities=32% Similarity=0.363 Sum_probs=134.7
Q ss_pred ccCCCCccEEEeecCCCChhHHHhccCCCCCCEEEecCCCCChhhHHHHhcCCCCCEEECCCCCCChHHHHhhhcCCCCc
Q 016017 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255 (396)
Q Consensus 176 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 255 (396)
...+++|++|+++++.+... ..+..+++|+.|++++|.+....+ +..+++|+.|++++|.+... ..+..+++|+
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~ 115 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLK 115 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCC
T ss_pred hhhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCCC
Confidence 44678899999999887754 347778899999999988776433 77888999999998887653 3477888888
Q ss_pred EEEccCCcCcHHHHHHhhCCCCCCEEeccCCCCChhHhHHHhCCCCccEEEcCCCCCCchhHHhhcCCCCCCEEeccCcc
Q 016017 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 335 (396)
Q Consensus 256 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 335 (396)
.|++++|.+... ..+..+++|+.|++++|.+... ..+..+++|+.|++++|.+++... +..+++|++|++++|.
T Consensus 116 ~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~ 189 (291)
T 1h6t_A 116 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 189 (291)
T ss_dssp EEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCc
Confidence 888888877663 3567788888888888887654 456778888888888888876544 7778888888888888
Q ss_pred cChhhhHhhhCCCCCCEeecCCCCCcHH
Q 016017 336 ISDGSLRKLAGLSSLKSLNLDARQITDT 363 (396)
Q Consensus 336 ~~~~~~~~l~~~~~L~~L~l~~~~l~~~ 363 (396)
+++. ..+..+++|+.|++++|++...
T Consensus 190 i~~l--~~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 190 ISDL--RALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp CCBC--GGGTTCTTCSEEEEEEEEEECC
T ss_pred CCCC--hhhccCCCCCEEECcCCcccCC
Confidence 8763 3467788888888888877653
No 96
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.72 E-value=9.8e-18 Score=135.29 Aligned_cols=151 Identities=28% Similarity=0.412 Sum_probs=87.7
Q ss_pred CCCCEEECCCCCCChHHHHhhhcCCCCcEEEccCCcCcHHHHHHhhCCCCCCEEeccCCCCChhHhHHHhCCCCccEEEc
Q 016017 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 307 (396)
Q Consensus 228 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 307 (396)
++|+.|+++++.+.... .+..+++|+.|++++|.+... ..+..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus 44 ~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 44 NSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HTCCEEEEESSCCSCCT--TGGGCTTCSEEEEESCCCSCC--GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred CCccEEeccCCCccChH--HHhcCCCCCEEEccCCCCCcc--hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 44555555554444221 344555555555555544332 24555666666666666665544555566666777777
Q ss_pred CCCCCCchhHHhhcCCCCCCEEeccCcc-cChhhhHhhhCCCCCCEeecCCCCCcHHHHHHHhcCccCCeeecCCCccCh
Q 016017 308 SDTQVGSSGLRHLSGLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386 (396)
Q Consensus 308 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~l~~ 386 (396)
++|.+++..+..+..+++|++|++++|. +++. + .+..+++|+.|++++|.+.+.. .+..+++|++|++++|+|++
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~-~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-M-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC-G-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC----
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCcccc-H-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCcccCC
Confidence 7766666556666666777777777765 5543 2 4566677777777777766532 56667777777777777654
No 97
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.70 E-value=9.3e-17 Score=137.70 Aligned_cols=174 Identities=29% Similarity=0.345 Sum_probs=146.6
Q ss_pred cCCCCcccEEecCCCCCccccccccccCCCCccEEEeecCCCChhHHHhccCCCCCCEEEecCCCCChhhHHHHhcCCCC
Q 016017 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230 (396)
Q Consensus 151 l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 230 (396)
...+++|+.|+++++. +... ..+..+++|++|++++|.++.... +..+++|+.|++++|.+... ..+..+++|
T Consensus 42 ~~~l~~L~~L~l~~~~-i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L 114 (291)
T 1h6t_A 42 QNELNSIDQIIANNSD-IKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKL 114 (291)
T ss_dssp HHHHHTCCEEECTTSC-CCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTC
T ss_pred hhhcCcccEEEccCCC-cccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCC
Confidence 4567899999999854 3332 457889999999999999887554 88999999999999988763 347889999
Q ss_pred CEEECCCCCCChHHHHhhhcCCCCcEEEccCCcCcHHHHHHhhCCCCCCEEeccCCCCChhHhHHHhCCCCccEEEcCCC
Q 016017 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 310 (396)
Q Consensus 231 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 310 (396)
+.|++++|.+... ..+..+++|+.|++++|.+... ..+..+++|+.|++++|.+.+..+ +..+++|+.|++++|
T Consensus 115 ~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N 188 (291)
T 1h6t_A 115 KSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 188 (291)
T ss_dssp CEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred CEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCC
Confidence 9999999988764 4678899999999999988765 467899999999999999887654 888999999999999
Q ss_pred CCCchhHHhhcCCCCCCEEeccCcccChh
Q 016017 311 QVGSSGLRHLSGLTNLESINLSFTGISDG 339 (396)
Q Consensus 311 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 339 (396)
.+++.. .+..+++|+.|++++|.+++.
T Consensus 189 ~i~~l~--~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 189 HISDLR--ALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp CCCBCG--GGTTCTTCSEEEEEEEEEECC
T ss_pred cCCCCh--hhccCCCCCEEECcCCcccCC
Confidence 998753 478899999999999987663
No 98
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.68 E-value=1.8e-16 Score=127.80 Aligned_cols=152 Identities=22% Similarity=0.307 Sum_probs=73.0
Q ss_pred CCCCccEEEeecCCCChhHHHhccCCCCCCEEEecCCCCChhhHHHHhcCCCCCEEECCCCCCChHHHHhhhcCCCCcEE
Q 016017 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 257 (396)
Q Consensus 178 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 257 (396)
.+++|++|+++++.+.... .+..+++|+.|++++|.+.. ...+..+++|++|++++|.+....+..
T Consensus 42 ~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~---------- 107 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPN---------- 107 (197)
T ss_dssp HHHTCCEEEEESSCCSCCT--TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCC----------
T ss_pred hcCCccEEeccCCCccChH--HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChh----------
Confidence 3455566666665555322 34455555555555553332 123344444444444444444333333
Q ss_pred EccCCcCcHHHHHHhhCCCCCCEEeccCCCCChhHhHHHhCCCCccEEEcCCCC-CCchhHHhhcCCCCCCEEeccCccc
Q 016017 258 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSFTGI 336 (396)
Q Consensus 258 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~~~ 336 (396)
+..+++|++|++++|.+.+..+..+..+++|++|++++|. +++.. .+..+++|++|++++|.+
T Consensus 108 --------------l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l~~L~~L~l~~n~i 171 (197)
T 4ezg_A 108 --------------LSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFDGV 171 (197)
T ss_dssp --------------CTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--GGGGCSSCCEEECTTBCC
T ss_pred --------------hcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH--hhcCCCCCCEEECCCCCC
Confidence 3444444445554444444344444455555555555554 43321 344555566666665555
Q ss_pred ChhhhHhhhCCCCCCEeecCCCCCc
Q 016017 337 SDGSLRKLAGLSSLKSLNLDARQIT 361 (396)
Q Consensus 337 ~~~~~~~l~~~~~L~~L~l~~~~l~ 361 (396)
++.. .+..+++|+.|++++|++.
T Consensus 172 ~~~~--~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 172 HDYR--GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CCCT--TGGGCSSCCEEEECBC---
T ss_pred cChH--HhccCCCCCEEEeeCcccC
Confidence 5422 4455566666666666554
No 99
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.67 E-value=8.3e-17 Score=151.03 Aligned_cols=174 Identities=32% Similarity=0.364 Sum_probs=141.8
Q ss_pred ccCCCCccEEEeecCCCChhHHHhccCCCCCCEEEecCCCCChhhHHHHhcCCCCCEEECCCCCCChHHHHhhhcCCCCc
Q 016017 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255 (396)
Q Consensus 176 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 255 (396)
+..+++|+.|+++++.+.... .+..+++|+.|++++|.+....+ +..+++|+.|++++|.+... ..+..+++|+
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~ 112 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL--SSLKDLKKLK 112 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCCT--TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC--TTSTTCTTCC
T ss_pred hhcCCCCCEEECcCCCCCCCh--HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC--hhhccCCCCC
Confidence 456788999999999887643 57889999999999998877543 78899999999999987653 3677889999
Q ss_pred EEEccCCcCcHHHHHHhhCCCCCCEEeccCCCCChhHhHHHhCCCCccEEEcCCCCCCchhHHhhcCCCCCCEEeccCcc
Q 016017 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 335 (396)
Q Consensus 256 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 335 (396)
.|++++|.+... ..+..+++|+.|++++|.+... ..+..+++|+.|++++|.+++..+ +..+++|+.|+|++|.
T Consensus 113 ~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~ 186 (605)
T 1m9s_A 113 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 186 (605)
T ss_dssp EEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCC
Confidence 999999888763 3577889999999999988764 467788899999999998877654 7788999999999998
Q ss_pred cChhhhHhhhCCCCCCEeecCCCCCcHH
Q 016017 336 ISDGSLRKLAGLSSLKSLNLDARQITDT 363 (396)
Q Consensus 336 ~~~~~~~~l~~~~~L~~L~l~~~~l~~~ 363 (396)
+++. ..+..+++|+.|++++|.+...
T Consensus 187 i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 187 ISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred CCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 8874 4577889999999999887764
No 100
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.67 E-value=3.7e-17 Score=143.06 Aligned_cols=289 Identities=13% Similarity=0.057 Sum_probs=194.6
Q ss_pred CCCCCeeeccCCcccChhHHHhhhC-CCCCcEEeccCCccccHHHHHHHhCCCCCcEecccccccccCcccccCC-----
Q 016017 80 CSNLQSLDFNFCIQISDGGLEHLRG-LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG----- 153 (396)
Q Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~----- 153 (396)
++++++|.+++ .+.......+.. +++|++|+++++........ -+.++.++.+....+. .....|..
T Consensus 24 ~~~l~~L~l~g--~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~--~~~~~~~~~~~~~~~~---I~~~aF~~~~~~~ 96 (329)
T 3sb4_A 24 ANSITHLTLTG--KLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGK--AGTYPNGKFYIYMANF---VPAYAFSNVVNGV 96 (329)
T ss_dssp HHHCSEEEEEE--EECHHHHHHHHHSCTTCCEEEEEEEEECCEEES--SSSSGGGCCEEECTTE---ECTTTTEEEETTE
T ss_pred hCceeEEEEec--cccHHHHHHHHHhhccCeEEecCcceeEEecCc--cccccccccccccccc---cCHHHhccccccc
Confidence 45788899987 456666667766 88999999998875310100 0122222333333321 12233566
Q ss_pred ---CCcccEEecCCCCCccccccccccCCCCccEEEeecCCCChhHHHhccCCCCCCEEEecCCC----CChhhHHHHhc
Q 016017 154 ---LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP----VTAACLDSLSA 226 (396)
Q Consensus 154 ---~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~----~~~~~~~~~~~ 226 (396)
+++|+.+++.. .++.....+|.+|++|+.+++..+.+.......|..+.++..+...... ........+..
T Consensus 97 ~~g~~~L~~l~L~~--~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~ 174 (329)
T 3sb4_A 97 TKGKQTLEKVILSE--KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIE 174 (329)
T ss_dssp EEECTTCCC-CBCT--TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEE
T ss_pred ccccCCCcEEECCc--cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccc
Confidence 88999999986 4566677788899999999999888776666777777766666554421 11111122345
Q ss_pred CCCCC-EEECCCCCCChHH-HHhhhcCCCCcEEEccCCcCcHHHHHHhhCCCCCCEEeccCCCCChhHhHHHhCCCCccE
Q 016017 227 LGSLF-YLNLNRCQLSDDG-CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 304 (396)
Q Consensus 227 ~~~L~-~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 304 (396)
+.+|+ .+.+.....-... ...-....++..+.+.+.-...........+++|+.+++.++.+...+..+|..+.+|+.
T Consensus 175 ~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~ 254 (329)
T 3sb4_A 175 GEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLK 254 (329)
T ss_dssp SCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCE
T ss_pred ccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCE
Confidence 56666 4555443211111 111113456777777765332222222235899999999998888777778899999999
Q ss_pred EEcCCCCCCchhHHhhcCCCCCC-EEeccCcccChhhhHhhhCCCCCCEeecCCCCCcHHHHHHHhcCccCCeeec
Q 016017 305 LELSDTQVGSSGLRHLSGLTNLE-SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379 (396)
Q Consensus 305 L~l~~~~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l 379 (396)
+.+.++ ++..+...|.+|++|+ .+++.+ .++......|.+|++|+.+++.++.+......+|.++++|+.|+.
T Consensus 255 l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 255 IKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 999987 7777778889999999 999988 777777788899999999999999888887789999999998864
No 101
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.67 E-value=6.8e-17 Score=151.60 Aligned_cols=176 Identities=29% Similarity=0.363 Sum_probs=148.5
Q ss_pred cCCCCcccEEecCCCCCccccccccccCCCCccEEEeecCCCChhHHHhccCCCCCCEEEecCCCCChhhHHHHhcCCCC
Q 016017 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230 (396)
Q Consensus 151 l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 230 (396)
+..+++|+.|+++++. +.. ...+..+++|+.|++++|.+....+ +..+++|+.|++++|.+... ..+..+++|
T Consensus 39 ~~~L~~L~~L~l~~n~-i~~--l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L 111 (605)
T 1m9s_A 39 QNELNSIDQIIANNSD-IKS--VQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL--SSLKDLKKL 111 (605)
T ss_dssp HHHHTTCCCCBCTTCC-CCC--CTTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC--TTSTTCTTC
T ss_pred hhcCCCCCEEECcCCC-CCC--ChHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC--hhhccCCCC
Confidence 5667889999999854 332 2468889999999999999887654 88999999999999988763 367889999
Q ss_pred CEEECCCCCCChHHHHhhhcCCCCcEEEccCCcCcHHHHHHhhCCCCCCEEeccCCCCChhHhHHHhCCCCccEEEcCCC
Q 016017 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 310 (396)
Q Consensus 231 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 310 (396)
+.|++++|.+... ..+..+++|+.|++++|.+... ..+..+++|+.|++++|.+.+..+ +..+++|+.|++++|
T Consensus 112 ~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N 185 (605)
T 1m9s_A 112 KSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 185 (605)
T ss_dssp CEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred CEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCC
Confidence 9999999998764 4578899999999999988765 568899999999999999987655 888999999999999
Q ss_pred CCCchhHHhhcCCCCCCEEeccCcccChhhh
Q 016017 311 QVGSSGLRHLSGLTNLESINLSFTGISDGSL 341 (396)
Q Consensus 311 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 341 (396)
.+++. ..+..+++|+.|++++|.+.....
T Consensus 186 ~i~~l--~~l~~l~~L~~L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 186 HISDL--RALAGLKNLDVLELFSQECLNKPI 214 (605)
T ss_dssp CCCBC--GGGTTCTTCSEEECCSEEEECCCC
T ss_pred CCCCC--hHHccCCCCCEEEccCCcCcCCcc
Confidence 99875 467889999999999998876433
No 102
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.64 E-value=1.1e-16 Score=140.08 Aligned_cols=284 Identities=15% Similarity=0.100 Sum_probs=185.2
Q ss_pred CCCccEEEeecCCCChHHHHHhhC-CCCCCeeeccCCcccC--hhHHHhhhCCCCCcEEeccCCccccHHHHHHHhC---
Q 016017 56 GSSLLSVDLSGSDVTDSGLIHLKD-CSNLQSLDFNFCIQIS--DGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAG--- 129 (396)
Q Consensus 56 ~~~l~~L~l~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~--~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~--- 129 (396)
..+++.|.+++. +.......+.. +++|+.|+|+++ .+. .... +.++.++.+....+. ++ ...|.+
T Consensus 24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n-~i~~~~~~~---~~~~~~~~~~~~~~~-I~---~~aF~~~~~ 94 (329)
T 3sb4_A 24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNA-EIKMYSGKA---GTYPNGKFYIYMANF-VP---AYAFSNVVN 94 (329)
T ss_dssp HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEE-EECCEEESS---SSSGGGCCEEECTTE-EC---TTTTEEEET
T ss_pred hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcc-eeEEecCcc---ccccccccccccccc-cC---HHHhccccc
Confidence 458999999975 44455666765 899999999986 344 1111 122223444444443 22 235666
Q ss_pred -----CCCCcEecccccccccCcccccCCCCcccEEecCCCCCccccccccccCCCCccEEEeecC----CCChhHHHhc
Q 016017 130 -----LINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS----KVTDSGIAYL 200 (396)
Q Consensus 130 -----~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~----~~~~~~~~~~ 200 (396)
|++|+++.+.+ .........|..+++|+.+++.+ +.+......+|..+.++..+..... .........|
T Consensus 95 ~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~-n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f 172 (329)
T 3sb4_A 95 GVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRK-KTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAF 172 (329)
T ss_dssp TEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCC-SSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCE
T ss_pred ccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCC-CCccccchhhhcCCCceEEecCcchhhhhcccccccccc
Confidence 88888888877 33333445688888899988887 4444556666777766666555432 1111122345
Q ss_pred cCCCCCC-EEEecCCCCChhhHHHHh---cCCCCCEEECCCCCCChHHHHhh-hcCCCCcEEEccCCcCcHHHHHHhhCC
Q 016017 201 KGLQKLT-LLNLEGCPVTAACLDSLS---ALGSLFYLNLNRCQLSDDGCEKF-SKIGSLKVLNLGFNEITDECLVHLKGL 275 (396)
Q Consensus 201 ~~~~~L~-~L~l~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~l~~~ 275 (396)
..+..|+ .+.+....... ...+. ...+++.+.+.+.- .......+ ..+++|+.++++.+.+.......|.++
T Consensus 173 ~~~~~L~~~i~~~~~~~l~--~~~~~~~~~~~~~~~l~~~~~l-~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~ 249 (329)
T 3sb4_A 173 IEGEPLETTIQVGAMGKLE--DEIMKAGLQPRDINFLTIEGKL-DNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQK 249 (329)
T ss_dssp EESCCCEEEEEECTTCCHH--HHHHHTTCCGGGCSEEEEEECC-CHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTC
T ss_pred ccccccceeEEecCCCcHH--HHHhhcccCccccceEEEeeee-cHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCC
Confidence 5666776 45554432211 11121 24566777776643 22222233 347889999998877766656678888
Q ss_pred CCCCEEeccCCCCChhHhHHHhCCCCcc-EEEcCCCCCCchhHHhhcCCCCCCEEeccCcccChhhhHhhhCCCCCCEee
Q 016017 276 TNLESLNLDSCGIGDEGLVNLTGLCNLK-CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 354 (396)
Q Consensus 276 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 354 (396)
++|+.+.+.++ +...+..+|.++++|+ .+.+.+ +++......|.+|++|+.+++..+.++......|.++++|+.++
T Consensus 250 ~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 250 KYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp TTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred CCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 89999998886 6656667788888898 999988 67777777888899999999988888887788888899998886
Q ss_pred c
Q 016017 355 L 355 (396)
Q Consensus 355 l 355 (396)
.
T Consensus 328 ~ 328 (329)
T 3sb4_A 328 K 328 (329)
T ss_dssp C
T ss_pred c
Confidence 4
No 103
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.64 E-value=3.6e-15 Score=131.85 Aligned_cols=188 Identities=24% Similarity=0.326 Sum_probs=137.3
Q ss_pred CCCCCEEEecCCCCChhhHHHHhc-----CCCCCEEECCCCCCChHHHHhhh-cCCCCcEEEccCCcCcHHHHHHh----
Q 016017 203 LQKLTLLNLEGCPVTAACLDSLSA-----LGSLFYLNLNRCQLSDDGCEKFS-KIGSLKVLNLGFNEITDECLVHL---- 272 (396)
Q Consensus 203 ~~~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~l---- 272 (396)
.+.|+.|++++|.+.......+.. .++|+.|++++|.+++.....+. .+++|+.|++++|.+.+.....+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 467999999999887754444433 26899999999998876655544 36789999999998876554444
Q ss_pred -hCCCCCCEEeccCCCCChhHhHH----HhCCCCccEEEcCCCCCCchhHH----hhcCCCCCCEEeccCcccChhhhHh
Q 016017 273 -KGLTNLESLNLDSCGIGDEGLVN----LTGLCNLKCLELSDTQVGSSGLR----HLSGLTNLESINLSFTGISDGSLRK 343 (396)
Q Consensus 273 -~~~~~L~~L~l~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~~~~----~l~~~~~L~~L~l~~~~~~~~~~~~ 343 (396)
...++|++|++++|.+++.+... +...++|++|++++|.+++.+.. .+..+++|++|++++|.+++.....
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 24688999999999987655444 36688999999999998876643 4466789999999999998865554
Q ss_pred h----hCCCCCCEeecCCCCCcHHHHHHHhcCc--c---CCeee--cCCCccChHHHH
Q 016017 344 L----AGLSSLKSLNLDARQITDTGLAALTSLT--G---LTHLD--LFGARITDSGAA 390 (396)
Q Consensus 344 l----~~~~~L~~L~l~~~~l~~~~~~~l~~~~--~---L~~l~--l~~~~l~~~~~~ 390 (396)
+ ..+++|+.|++++|.+++.+...+..+. . |+.+. +.++.+++....
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~~~~~~ 288 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSV 288 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CHHHHHH
T ss_pred HHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccCHHHHH
Confidence 4 3578999999999999988887776542 1 66666 667777665433
No 104
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.64 E-value=8.9e-17 Score=130.95 Aligned_cols=162 Identities=20% Similarity=0.158 Sum_probs=103.5
Q ss_pred CCccEEEeecCCCChhHHHhccCCCCCCEEEecCCCCChhhHHHHhcCCCCCEEECCCCCCChHHHHhhhcCCCCcEEEc
Q 016017 180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 259 (396)
Q Consensus 180 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 259 (396)
++|++|+++++.++......+..+++|+.|+++++.+....+..+..+++|++|++++|.+.......+..+++|+.|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 45666666666665544444556666666666666655443444556667777777766665544444566777777777
Q ss_pred cCCcCcHHHHHHhhCCCCCCEEeccCCCCChhHhHHHhCCCCccEEEcCCCCCCchhHHhhcCCCCCCEEeccCcccChh
Q 016017 260 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339 (396)
Q Consensus 260 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 339 (396)
++|.+....+..+..+++|++|++++|.+.......+..+++|++|++++|.+.. .+++|++|++..|.+++.
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ 180 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGV 180 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTT
T ss_pred CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCce
Confidence 7776655444445667777777777777665544456667777777777776542 467777777777777766
Q ss_pred hhHhhhCCC
Q 016017 340 SLRKLAGLS 348 (396)
Q Consensus 340 ~~~~l~~~~ 348 (396)
.+..++.++
T Consensus 181 ip~~~~~l~ 189 (208)
T 2o6s_A 181 VRNSAGSVA 189 (208)
T ss_dssp BBCTTSSBC
T ss_pred eeccCcccc
Confidence 666655443
No 105
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.64 E-value=5.6e-15 Score=130.60 Aligned_cols=186 Identities=23% Similarity=0.338 Sum_probs=136.8
Q ss_pred CCCccEEEeecCCCChhHHHhcc-----CCCCCCEEEecCCCCChhhHHHHh-cCCCCCEEECCCCCCChHHHHhhh---
Q 016017 179 LTNLKSLQISCSKVTDSGIAYLK-----GLQKLTLLNLEGCPVTAACLDSLS-ALGSLFYLNLNRCQLSDDGCEKFS--- 249 (396)
Q Consensus 179 ~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~--- 249 (396)
.++|++|++++|.++......+. ..++|+.|++++|.+.......+. .+++|+.|++++|.+++.....+.
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 46889999999998876554442 337999999999988765444433 457899999999998877655543
Q ss_pred --cCCCCcEEEccCCcCcHHH----HHHhhCCCCCCEEeccCCCCChhHh----HHHhCCCCccEEEcCCCCCCchhHHh
Q 016017 250 --KIGSLKVLNLGFNEITDEC----LVHLKGLTNLESLNLDSCGIGDEGL----VNLTGLCNLKCLELSDTQVGSSGLRH 319 (396)
Q Consensus 250 --~~~~L~~L~l~~~~~~~~~----~~~l~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~ 319 (396)
..++|+.|++++|.+.+.. ...+...++|++|++++|.+.+.+. ..+...++|++|++++|.+++.+...
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 4678999999999886543 3344678899999999999887653 44556789999999999998876554
Q ss_pred h----cCCCCCCEEeccCcccChhhhHhhhCC--CC---CCEee--cCCCCCcHHH
Q 016017 320 L----SGLTNLESINLSFTGISDGSLRKLAGL--SS---LKSLN--LDARQITDTG 364 (396)
Q Consensus 320 l----~~~~~L~~L~l~~~~~~~~~~~~l~~~--~~---L~~L~--l~~~~l~~~~ 364 (396)
+ ..+++|++|++++|.+++.....+..+ +. |+.+. +.++.+.+..
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~~~~ 286 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYW 286 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CHHHH
T ss_pred HHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccCHHH
Confidence 4 457899999999999998887777643 12 77777 6777776543
No 106
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.63 E-value=2.7e-16 Score=139.28 Aligned_cols=176 Identities=19% Similarity=0.189 Sum_probs=82.7
Q ss_pred cEEEeecCCCChhHHHhccCCCCCCEEEecCCCCChhhHHHHh-cCCCCCEEECCCCCCChHHHHhhhcCCCCcEEEccC
Q 016017 183 KSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS-ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 261 (396)
Q Consensus 183 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 261 (396)
+.++++++.++..+ .. -.+.++.|++++|.+.......+. .+++|+.|++++|.+....+..+..+++|+.|++++
T Consensus 21 ~~l~c~~~~l~~iP-~~--~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPNVP-QS--LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSSCC-SS--CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCccC-cc--CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 34555555554321 11 123455566666555543333333 455555555555554444333444455555555555
Q ss_pred CcCcHHHHHHhhCCCCCCEEeccCCCCChhHhHHHhCCCCccEEEcCCCCCCchhHHhhcCCCCCCEEeccCcccChhhh
Q 016017 262 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 341 (396)
Q Consensus 262 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 341 (396)
|.+.. ..+..+..+++|+.|++++|.++......+..+++|++|++++|.++....
T Consensus 98 N~l~~------------------------~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~ 153 (361)
T 2xot_A 98 NHLHT------------------------LDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPV 153 (361)
T ss_dssp SCCCE------------------------ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCG
T ss_pred CcCCc------------------------CCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCH
Confidence 44443 333334444455555555554444434444445555555555554444322
Q ss_pred Hhh---hCCCCCCEeecCCCCCcHHHHHHHhcCcc--CCeeecCCCccC
Q 016017 342 RKL---AGLSSLKSLNLDARQITDTGLAALTSLTG--LTHLDLFGARIT 385 (396)
Q Consensus 342 ~~l---~~~~~L~~L~l~~~~l~~~~~~~l~~~~~--L~~l~l~~~~l~ 385 (396)
..+ ..+++|+.|++++|.+.......+..++. ++.|++.+|++.
T Consensus 154 ~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 154 ELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp GGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred HHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 222 33455555555555555444444444444 255555555544
No 107
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.63 E-value=1.6e-16 Score=129.39 Aligned_cols=163 Identities=23% Similarity=0.142 Sum_probs=116.0
Q ss_pred CCCCCEEEecCCCCChhhHHHHhcCCCCCEEECCCCCCChHHHHhhhcCCCCcEEEccCCcCcHHHHHHhhCCCCCCEEe
Q 016017 203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282 (396)
Q Consensus 203 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 282 (396)
.++++.|+++++.+.......+..+++|++|++++|.+.......+..+++|++|++++|.+....+..+..+++|++|+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence 45788888888877765555567788888888888877765555567778888888888877655444567778888888
Q ss_pred ccCCCCChhHhHHHhCCCCccEEEcCCCCCCchhHHhhcCCCCCCEEeccCcccChhhhHhhhCCCCCCEeecCCCCCcH
Q 016017 283 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362 (396)
Q Consensus 283 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~ 362 (396)
+++|.+....+..+..+++|++|++++|.++......+..+++|++|++++|.+. +.+++|+.|++..|.+++
T Consensus 107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~L~~~~n~~~g 179 (208)
T 2o6s_A 107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSG 179 (208)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC-------CCTTTTHHHHHHHHHCTT
T ss_pred cCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee-------cCCCCHHHHHHHHHhCCc
Confidence 8888777655555667778888888888777655555667788888888877554 345677777777776666
Q ss_pred HHHHHHhcCc
Q 016017 363 TGLAALTSLT 372 (396)
Q Consensus 363 ~~~~~l~~~~ 372 (396)
..+..++.++
T Consensus 180 ~ip~~~~~l~ 189 (208)
T 2o6s_A 180 VVRNSAGSVA 189 (208)
T ss_dssp TBBCTTSSBC
T ss_pred eeeccCcccc
Confidence 5555554443
No 108
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.62 E-value=2e-16 Score=129.69 Aligned_cols=152 Identities=18% Similarity=0.233 Sum_probs=110.1
Q ss_pred CEEEecCCCCChhhHHHHhcCCCCCEEECCCCCCChHHHHhhhcCCCCcEEEccCCcCcHHHHHHhhCCCCCCEEeccCC
Q 016017 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 286 (396)
Q Consensus 207 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 286 (396)
+.++.+++.+... +..+ .++++.|++++|.+....+..+..+++|+.|++++|.+....+..+.++++|++|++++|
T Consensus 14 ~~v~c~~~~l~~i-P~~l--~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEI-PTNL--PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSSC-CSSC--CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCcC-CCcc--CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 4566666655442 2111 257888888888877666566777888888888888777665666777888888888888
Q ss_pred CCChhHhHHHhCCCCccEEEcCCCCCCchhHHhhcCCCCCCEEeccCcccChhhhHhhhCCCCCCEeecCCCCCc
Q 016017 287 GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 361 (396)
Q Consensus 287 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~ 361 (396)
.+.......+..+++|+.|++++|.++...+..+..+++|++|++++|.++...+..+..+++|+.|++++|++.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 777655555667778888888888877766667777788888888888777766666777788888888877664
No 109
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.60 E-value=4.3e-16 Score=127.77 Aligned_cols=152 Identities=22% Similarity=0.225 Sum_probs=113.7
Q ss_pred CEEEecCCCCChhhHHHHhcCCCCCEEECCCCCCChHHH-HhhhcCCCCcEEEccCCcCcHHHHHHhhCCCCCCEEeccC
Q 016017 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC-EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285 (396)
Q Consensus 207 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 285 (396)
+.++++++.+... +.. -.+.++.|++++|.+....+ ..+..+++|+.|++++|.+....+..+..+++|++|++++
T Consensus 14 ~~l~~s~n~l~~i-P~~--~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNKI-PEH--IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSSC-CSC--CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcccC-ccC--CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 4778887766552 221 13467888888888776532 3467788888888888887766555677888888888888
Q ss_pred CCCChhHhHHHhCCCCccEEEcCCCCCCchhHHhhcCCCCCCEEeccCcccChhhhHhhhCCCCCCEeecCCCCCc
Q 016017 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 361 (396)
Q Consensus 286 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~ 361 (396)
|.+....+..+..+++|++|++++|.++...+..+..+++|++|++++|.++...+..+..+++|+.|++++|++.
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 8887766666777888888888888887766667777888888888888887766777777888888888887765
No 110
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.59 E-value=3.8e-16 Score=131.71 Aligned_cols=170 Identities=22% Similarity=0.245 Sum_probs=123.7
Q ss_pred CCCccEEEeecCCCChhHHHhccCCCCCCEEEecCCCCChhhHHHHhcCCCCCEEECCCCCCChHHHHhhhcCCCCcEEE
Q 016017 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 258 (396)
Q Consensus 179 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 258 (396)
+.++..++++.+.+++.. .+..+++|+.|+++++.+... + .+..+++|+.|++++|.+.+..+ +..+++|+.|+
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~ 91 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence 344556666666666543 456678888888888877653 2 56778888888888888776544 77888888888
Q ss_pred ccCCcCcHHHHHHhhCCCCCCEEeccCCCCChhHhHHHhCCCCccEEEcCCCCCCchhHHhhcCCCCCCEEeccCcccCh
Q 016017 259 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338 (396)
Q Consensus 259 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 338 (396)
+++|.+.... .+.. ++|+.|++++|.+.+. ..+..+++|+.|++++|.+++.. .+..+++|++|++++|.+++
T Consensus 92 L~~N~l~~l~--~~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 92 VNRNRLKNLN--GIPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITN 164 (263)
T ss_dssp CCSSCCSCCT--TCCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTSCCCB
T ss_pred CCCCccCCcC--cccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCCh--HHccCCCCCEEECCCCcCcc
Confidence 8888776532 2233 7888888888887653 34677888888888888887653 56778888888888888777
Q ss_pred hhhHhhhCCCCCCEeecCCCCCcHH
Q 016017 339 GSLRKLAGLSSLKSLNLDARQITDT 363 (396)
Q Consensus 339 ~~~~~l~~~~~L~~L~l~~~~l~~~ 363 (396)
. ..+..+++|+.|++++|++...
T Consensus 165 ~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 165 T--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp C--TTSTTCCCCCEEEEEEEEEECC
T ss_pred h--HHhccCCCCCEEeCCCCcccCC
Confidence 5 5566788888888888777654
No 111
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.59 E-value=7.2e-16 Score=127.32 Aligned_cols=152 Identities=20% Similarity=0.123 Sum_probs=100.1
Q ss_pred CCEEEecCCCCChhhHHHHhcCCCCCEEECCCCCCChHHHHhhhcCCCCcEEEccCCcCcHHHHHHhhCCCCCCEEeccC
Q 016017 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285 (396)
Q Consensus 206 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 285 (396)
.+.++.+++.+... +. .-.++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++
T Consensus 21 ~~~v~c~~~~l~~i-p~--~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHASV-PA--GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCSSC-CS--CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcCcc-CC--CCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 45566666655442 11 1236778888887777766556667777777777777777654444566777777777777
Q ss_pred CCCChhHhHHHhCCCCccEEEcCCCCCCchhHHhhcCCCCCCEEeccCcccChhhhHhhhCCCCCCEeecCCCCCc
Q 016017 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 361 (396)
Q Consensus 286 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~ 361 (396)
|.+....+..+..+++|+.|++++|.++.. +..+..+++|++|++++|.++......+..+++|+.|++.+|++.
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLTEL-PRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCSC-CTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CcCCccChhHhCcchhhCeEeccCCccccc-CcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 777655555566677777777777776632 344456677777777777776655555666777777777777655
No 112
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.59 E-value=9e-16 Score=135.93 Aligned_cols=176 Identities=19% Similarity=0.168 Sum_probs=135.4
Q ss_pred cEEecCCCCCccccccccccCCCCccEEEeecCCCChhHHHhcc-CCCCCCEEEecCCCCChhhHHHHhcCCCCCEEECC
Q 016017 158 ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLK-GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236 (396)
Q Consensus 158 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 236 (396)
+.+++.+ ..++. .+..+ .+.++.|++++|.++......+. .+++|+.|++++|.+....+..+..+++|+.|+++
T Consensus 21 ~~l~c~~-~~l~~-iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSK-QQLPN-VPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCS-SCCSS-CCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCC-CCcCc-cCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 5677766 33333 22222 25689999999999987777776 89999999999999988766778899999999999
Q ss_pred CCCCChHHHHhhhcCCCCcEEEccCCcCcHHHHHHhhCCCCCCEEeccCCCCChhHhHHH---hCCCCccEEEcCCCCCC
Q 016017 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL---TGLCNLKCLELSDTQVG 313 (396)
Q Consensus 237 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~ 313 (396)
+|.+.......+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.......+ ..+++|+.|++++|.++
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 999887766678889999999999998877656677888899999999988876544444 45778888888888887
Q ss_pred chhHHhhcCCCC--CCEEeccCcccC
Q 016017 314 SSGLRHLSGLTN--LESINLSFTGIS 337 (396)
Q Consensus 314 ~~~~~~l~~~~~--L~~L~l~~~~~~ 337 (396)
......+..++. ++.|++.+|.+.
T Consensus 177 ~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 177 KLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred ccCHHHhhhccHhhcceEEecCCCcc
Confidence 766666666665 377788777654
No 113
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.59 E-value=1.8e-15 Score=140.40 Aligned_cols=189 Identities=17% Similarity=0.102 Sum_probs=146.4
Q ss_pred cccEEecCCCCCccccccccccCCCCccEEEeecCCCChhHHHhccCCCCCCEEEecCCCCChhhHHHHhcCCCCCEEEC
Q 016017 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235 (396)
Q Consensus 156 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 235 (396)
+++.|+++++. +++ .+..+ .++|++|++++|.++... ..+++|+.|++++|.+... +. +.. +|+.|++
T Consensus 60 ~L~~L~Ls~n~-L~~-lp~~l--~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~~i-p~-l~~--~L~~L~L 127 (571)
T 3cvr_A 60 QFSELQLNRLN-LSS-LPDNL--PPQITVLEITQNALISLP----ELPASLEYLDACDNRLSTL-PE-LPA--SLKHLDV 127 (571)
T ss_dssp TCSEEECCSSC-CSC-CCSCC--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCC-CC-CCT--TCCEEEC
T ss_pred CccEEEeCCCC-CCc-cCHhH--cCCCCEEECcCCCCcccc----cccCCCCEEEccCCCCCCc-ch-hhc--CCCEEEC
Confidence 89999999854 444 33333 378999999999988543 5578999999999988763 33 333 9999999
Q ss_pred CCCCCChHHHHhhhcCCCCcEEEccCCcCcHHHHHHhhCCCCCCEEeccCCCCChhHhHHHhCCCCccEEEcCCCCCCch
Q 016017 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 315 (396)
Q Consensus 236 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 315 (396)
++|.+..... .+++|+.|++++|.+... +. .+++|+.|++++|.+...+. +. ++|+.|++++|.++..
T Consensus 128 s~N~l~~lp~----~l~~L~~L~Ls~N~l~~l-p~---~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~L~~l 195 (571)
T 3cvr_A 128 DNNQLTMLPE----LPALLEYINADNNQLTML-PE---LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDVSTNLLESL 195 (571)
T ss_dssp CSSCCSCCCC----CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSCCCC--CC--TTCCEEECCSSCCSSC
T ss_pred CCCcCCCCCC----cCccccEEeCCCCccCcC-CC---cCCCcCEEECCCCCCCCcch--hh--CCCCEEECcCCCCCch
Confidence 9998876332 678999999999988763 32 57899999999999876433 44 7999999999998754
Q ss_pred hHHhhcCCCCC-------CEEeccCcccChhhhHhhhCCCCCCEeecCCCCCcHHHHHHHhcCcc
Q 016017 316 GLRHLSGLTNL-------ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 373 (396)
Q Consensus 316 ~~~~l~~~~~L-------~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~ 373 (396)
.. +.. +| +.|++++|.++. ++..+..+++|+.|++++|++++..+..+..++.
T Consensus 196 p~--~~~--~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 196 PA--VPV--RNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp CC--CC----------CCEEEECCSSCCCC-CCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred hh--HHH--hhhcccccceEEecCCCccee-cCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 33 332 66 999999999986 5666777999999999999999988888766543
No 114
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.58 E-value=1.4e-15 Score=124.77 Aligned_cols=152 Identities=22% Similarity=0.218 Sum_probs=125.3
Q ss_pred cEEEeecCCCChhHHHhccCCCCCCEEEecCCCCChhhHHHHhcCCCCCEEECCCCCCChHHHHhhhcCCCCcEEEccCC
Q 016017 183 KSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 262 (396)
Q Consensus 183 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 262 (396)
+.++.+++.++..+. .+ .++++.|+++++.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|
T Consensus 14 ~~v~c~~~~l~~iP~-~l--~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPT-NL--PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSSCCS-SC--CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCcCCC-cc--CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 466777776664321 22 368999999999888766667788899999999999988777778889999999999999
Q ss_pred cCcHHHHHHhhCCCCCCEEeccCCCCChhHhHHHhCCCCccEEEcCCCCCCchhHHhhcCCCCCCEEeccCcccC
Q 016017 263 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 337 (396)
Q Consensus 263 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 337 (396)
.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.++......+..+++|++|++++|.+.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 888665556788999999999999988777778888999999999999998877777888999999999998764
No 115
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.58 E-value=5.3e-15 Score=137.30 Aligned_cols=188 Identities=18% Similarity=0.105 Sum_probs=143.6
Q ss_pred CCCcEecccccccccCcccccCCCCcccEEecCCCCCccccccccccCCCCccEEEeecCCCChhHHHhccCCCCCCEEE
Q 016017 131 INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210 (396)
Q Consensus 131 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 210 (396)
.+++.|+++++... ..+..+ .++|+.|+++++. ++.. + ..+++|++|++++|.++... . +.. +|+.|+
T Consensus 59 ~~L~~L~Ls~n~L~-~lp~~l--~~~L~~L~Ls~N~-l~~i-p---~~l~~L~~L~Ls~N~l~~ip-~-l~~--~L~~L~ 126 (571)
T 3cvr_A 59 NQFSELQLNRLNLS-SLPDNL--PPQITVLEITQNA-LISL-P---ELPASLEYLDACDNRLSTLP-E-LPA--SLKHLD 126 (571)
T ss_dssp TTCSEEECCSSCCS-CCCSCC--CTTCSEEECCSSC-CSCC-C---CCCTTCCEEECCSSCCSCCC-C-CCT--TCCEEE
T ss_pred CCccEEEeCCCCCC-ccCHhH--cCCCCEEECcCCC-Cccc-c---cccCCCCEEEccCCCCCCcc-h-hhc--CCCEEE
Confidence 48999999997543 344334 3789999999954 4432 2 45799999999999988743 2 443 999999
Q ss_pred ecCCCCChhhHHHHhcCCCCCEEECCCCCCChHHHHhhhcCCCCcEEEccCCcCcHHHHHHhhCCCCCCEEeccCCCCCh
Q 016017 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290 (396)
Q Consensus 211 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 290 (396)
+++|.+... +. .+++|+.|++++|.+..... .+++|+.|++++|.+... +. +. ++|+.|++++|.+..
T Consensus 127 Ls~N~l~~l-p~---~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~l-p~-l~--~~L~~L~Ls~N~L~~ 194 (571)
T 3cvr_A 127 VDNNQLTML-PE---LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTFL-PE-LP--ESLEALDVSTNLLES 194 (571)
T ss_dssp CCSSCCSCC-CC---CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCC-CC-CC--TTCCEEECCSSCCSS
T ss_pred CCCCcCCCC-CC---cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCCc-ch-hh--CCCCEEECcCCCCCc
Confidence 999988763 33 68999999999998875332 578999999999988763 33 44 899999999998874
Q ss_pred hHhHHHhCCCCc-------cEEEcCCCCCCchhHHhhcCCCCCCEEeccCcccChhhhHhhhCC
Q 016017 291 EGLVNLTGLCNL-------KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 347 (396)
Q Consensus 291 ~~~~~~~~~~~L-------~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~ 347 (396)
.+. +.. +| +.|++++|.++.. +..+..+++|+.|++++|.+++..+..+..+
T Consensus 195 lp~--~~~--~L~~~~~~L~~L~Ls~N~l~~l-p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 195 LPA--VPV--RNHHSEETEIFFRCRENRITHI-PENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp CCC--CC----------CCEEEECCSSCCCCC-CGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred hhh--HHH--hhhcccccceEEecCCCcceec-CHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 333 433 66 9999999999864 3445569999999999999999888877653
No 116
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.57 E-value=4.1e-15 Score=121.92 Aligned_cols=153 Identities=21% Similarity=0.211 Sum_probs=126.4
Q ss_pred cEEEeecCCCChhHHHhccCCCCCCEEEecCCCCChhh-HHHHhcCCCCCEEECCCCCCChHHHHhhhcCCCCcEEEccC
Q 016017 183 KSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC-LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 261 (396)
Q Consensus 183 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 261 (396)
+.++++++.++..+ ..+ .+.++.|+++++.+.... ...+..+++|+.|++++|.+....+..+..+++|+.|++++
T Consensus 14 ~~l~~s~n~l~~iP-~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNKIP-EHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSSCC-SCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcccCc-cCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 47888888777532 222 356789999999887652 23477899999999999998877666788999999999999
Q ss_pred CcCcHHHHHHhhCCCCCCEEeccCCCCChhHhHHHhCCCCccEEEcCCCCCCchhHHhhcCCCCCCEEeccCcccCh
Q 016017 262 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338 (396)
Q Consensus 262 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 338 (396)
|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.++...+..+..+++|++|++++|.+..
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 98887666678899999999999999987777778889999999999999988777788889999999999997753
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.56 E-value=2.2e-15 Score=127.05 Aligned_cols=170 Identities=22% Similarity=0.223 Sum_probs=138.1
Q ss_pred CCcccEEecCCCCCccccccccccCCCCccEEEeecCCCChhHHHhccCCCCCCEEEecCCCCChhhHHHHhcCCCCCEE
Q 016017 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233 (396)
Q Consensus 154 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 233 (396)
+.++..+++.+ ..+++. ..+..+++|++|++++|.+.... .+..+++|+.|++++|.+....+ +..+++|+.|
T Consensus 18 l~~l~~l~l~~-~~i~~~--~~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L 90 (263)
T 1xeu_A 18 LANAVKQNLGK-QSVTDL--VSQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHTC-SCTTSE--ECHHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred HHHHHHHHhcC-CCcccc--cchhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence 45566677776 333332 25678899999999999888653 67889999999999998887544 8889999999
Q ss_pred ECCCCCCChHHHHhhhcCCCCcEEEccCCcCcHHHHHHhhCCCCCCEEeccCCCCChhHhHHHhCCCCccEEEcCCCCCC
Q 016017 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 313 (396)
Q Consensus 234 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 313 (396)
++++|.+.... .+.. ++|+.|++++|.+... ..+..+++|+.|++++|.+.+.. .+..+++|+.|++++|.++
T Consensus 91 ~L~~N~l~~l~--~~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N~i~ 163 (263)
T 1xeu_A 91 SVNRNRLKNLN--GIPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEIT 163 (263)
T ss_dssp ECCSSCCSCCT--TCCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTSCCC
T ss_pred ECCCCccCCcC--cccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCCh--HHccCCCCCEEECCCCcCc
Confidence 99999887643 2333 8999999999988764 35889999999999999988653 6788999999999999998
Q ss_pred chhHHhhcCCCCCCEEeccCcccChh
Q 016017 314 SSGLRHLSGLTNLESINLSFTGISDG 339 (396)
Q Consensus 314 ~~~~~~l~~~~~L~~L~l~~~~~~~~ 339 (396)
+. ..+..+++|+.|++++|.++..
T Consensus 164 ~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 164 NT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp BC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred ch--HHhccCCCCCEEeCCCCcccCC
Confidence 76 6678899999999999987654
No 118
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.54 E-value=6.9e-15 Score=112.86 Aligned_cols=128 Identities=30% Similarity=0.264 Sum_probs=83.3
Q ss_pred CCCcEEEccCCcCc-HHHHHHhhCCCCCCEEeccCCCCChhHhHHHhCCCCccEEEcCCCCCCchhHHhhcCCCCCCEEe
Q 016017 252 GSLKVLNLGFNEIT-DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 330 (396)
Q Consensus 252 ~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 330 (396)
++++.|++++|.+. +..+..+..+++|+.|++++|.+... ..+..+++|++|++++|.++...+..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 45666666666554 22333445666777777777666543 4456667777777777777665555555677777777
Q ss_pred ccCcccChh-hhHhhhCCCCCCEeecCCCCCcHHHH---HHHhcCccCCeeecCC
Q 016017 331 LSFTGISDG-SLRKLAGLSSLKSLNLDARQITDTGL---AALTSLTGLTHLDLFG 381 (396)
Q Consensus 331 l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~l~~~~~---~~l~~~~~L~~l~l~~ 381 (396)
+++|.+++. .+..+..+++|+.|++++|.+++..+ ..+..+++|+.|++++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 777777663 33566677778888887777776543 4667777888877753
No 119
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.54 E-value=1e-15 Score=134.96 Aligned_cols=183 Identities=14% Similarity=0.105 Sum_probs=85.2
Q ss_pred CCccEEEeecCCCChHHHHHhhCCCCCCeeeccCCcccChhHHHhhhCCCCCcEEec-cCCccccHHHHHHHhCCCCCcE
Q 016017 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF-RRNNAITAQGMKAFAGLINLVK 135 (396)
Q Consensus 57 ~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l-~~~~~~~~~~~~~~~~~~~L~~ 135 (396)
+++++|+|++++++......|+++++|++|+|+++..........+.++++++++.. .++. +....+..+..+++|++
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~-l~~l~~~~f~~l~~L~~ 108 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN-LLYINPEAFQNLPNLQY 108 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETT-CCEECTTSBCCCTTCCE
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCc-ccccCchhhhhcccccc
Confidence 456666666666654434455666666666666553222222334455555554333 2232 33333344555666666
Q ss_pred ecccccccccCcccccCCCCcccEEecCCCCCccccccccccCCC-CccEEEeecCCCChhHHHhccCCCCCCEEEecC-
Q 016017 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT-NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG- 213 (396)
Q Consensus 136 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~- 213 (396)
|++++|.........+....++..+++.++..+.......+..+. .++.|++++|.++......+ ...+|+.+.+.+
T Consensus 109 L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f-~~~~L~~l~l~~~ 187 (350)
T 4ay9_X 109 LLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAF-NGTQLDELNLSDN 187 (350)
T ss_dssp EEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSS-TTEEEEEEECTTC
T ss_pred ccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhc-cccchhHHhhccC
Confidence 666655433222222333444555555443334333333333332 35555555555554322222 223455555543
Q ss_pred CCCChhhHHHHhcCCCCCEEECCCCCCC
Q 016017 214 CPVTAACLDSLSALGSLFYLNLNRCQLS 241 (396)
Q Consensus 214 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 241 (396)
+.+.......+..+++|+.|++++|.+.
T Consensus 188 n~l~~i~~~~f~~l~~L~~LdLs~N~l~ 215 (350)
T 4ay9_X 188 NNLEELPNDVFHGASGPVILDISRTRIH 215 (350)
T ss_dssp TTCCCCCTTTTTTEECCSEEECTTSCCC
T ss_pred CcccCCCHHHhccCcccchhhcCCCCcC
Confidence 2333322233444555555555555544
No 120
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.53 E-value=9e-15 Score=120.72 Aligned_cols=153 Identities=19% Similarity=0.118 Sum_probs=120.4
Q ss_pred ccEEEeecCCCChhHHHhccCCCCCCEEEecCCCCChhhHHHHhcCCCCCEEECCCCCCChHHHHhhhcCCCCcEEEccC
Q 016017 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 261 (396)
Q Consensus 182 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 261 (396)
-+.++.+++.+..... .-.++|+.|++++|.+....+..+..+++|+.|++++|.+.......+..+++|+.|++++
T Consensus 21 ~~~v~c~~~~l~~ip~---~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPA---GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCSSCCS---CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcCccCC---CCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 4567777766654332 2237899999999988876667778889999999999988766656678889999999999
Q ss_pred CcCcHHHHHHhhCCCCCCEEeccCCCCChhHhHHHhCCCCccEEEcCCCCCCchhHHhhcCCCCCCEEeccCcccCh
Q 016017 262 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338 (396)
Q Consensus 262 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 338 (396)
|.+....+..+..+++|+.|++++|.+.. .+..+..+++|++|++++|.++......+..+++|+.|++++|.+..
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCS-CCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred CcCCccChhHhCcchhhCeEeccCCcccc-cCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 98876655567788999999999998874 35566788899999999998887666667888999999999987764
No 121
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.53 E-value=3.5e-15 Score=117.00 Aligned_cols=133 Identities=29% Similarity=0.248 Sum_probs=78.0
Q ss_pred CCCcEEEccCCcCc-HHHHHHhhCCCCCCEEeccCCCCChhHhHHHhCCCCccEEEcCCCCCCchhHHhhcCCCCCCEEe
Q 016017 252 GSLKVLNLGFNEIT-DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 330 (396)
Q Consensus 252 ~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 330 (396)
++|+.|++++|.+. +..+..+..+++|+.|++++|.+... ..+..+++|++|++++|.++...+..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 44555555555443 12233344555666666666655433 3445566666666666666554344444566777777
Q ss_pred ccCcccChhh-hHhhhCCCCCCEeecCCCCCcHHHH---HHHhcCccCCeeecCCCccCh
Q 016017 331 LSFTGISDGS-LRKLAGLSSLKSLNLDARQITDTGL---AALTSLTGLTHLDLFGARITD 386 (396)
Q Consensus 331 l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~l~~~~~---~~l~~~~~L~~l~l~~~~l~~ 386 (396)
+++|.+++.. +..+..+++|+.|++++|.+.+... ..+..+++|+.|++++|.+.+
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 7777666532 2456667777777777777665433 466677777777777776654
No 122
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.52 E-value=2e-16 Score=147.50 Aligned_cols=196 Identities=18% Similarity=0.167 Sum_probs=103.5
Q ss_pred cCCCCccEEEeecCCCChhHHHhccCCCCCCEEEecCCC-------------CChhhHHHHhcCCCCCEEE-CCCCCCCh
Q 016017 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP-------------VTAACLDSLSALGSLFYLN-LNRCQLSD 242 (396)
Q Consensus 177 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-------------~~~~~~~~~~~~~~L~~L~-l~~~~~~~ 242 (396)
..+++|+.|++++|.+. ..+..++.+++|+.|+++++. .....+..+..+++|+.|+ ++.+.+..
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 424 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence 45677777888777765 446667777777777765542 1222333444445555554 33221111
Q ss_pred HHHH-----hhh--cCCCCcEEEccCCcCcHHHHHHhhCCCCCCEEeccCCCCChhHhHHHhCCCCccEEEcCCCCCCch
Q 016017 243 DGCE-----KFS--KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 315 (396)
Q Consensus 243 ~~~~-----~l~--~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 315 (396)
.... .+. ....|+.|++++|.+... +. +..+++|+.|++++|.+. ..|..++.+++|+.|++++|.+++.
T Consensus 425 L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~l-p~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~l 501 (567)
T 1dce_A 425 LRSKFLLENSVLKMEYADVRVLHLAHKDLTVL-CH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV 501 (567)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEECTTSCCSSC-CC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC
T ss_pred hhhhhhhcccccccCccCceEEEecCCCCCCC-cC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCCC
Confidence 0000 011 012456666666655542 22 555566666666666555 2334555566666666666666543
Q ss_pred hHHhhcCCCCCCEEeccCcccChhh-hHhhhCCCCCCEeecCCCCCcHHHH---HHHhcCccCCeee
Q 016017 316 GLRHLSGLTNLESINLSFTGISDGS-LRKLAGLSSLKSLNLDARQITDTGL---AALTSLTGLTHLD 378 (396)
Q Consensus 316 ~~~~l~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~l~~~~~---~~l~~~~~L~~l~ 378 (396)
. .+..+++|+.|++++|.+++.. +..+..+++|+.|++++|.+++..+ ..+..+|+|+.|+
T Consensus 502 p--~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 502 D--GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp G--GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred c--ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 2 4555666666666666665543 5555566666666666665554321 2233455565554
No 123
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.51 E-value=1.1e-14 Score=128.31 Aligned_cols=222 Identities=21% Similarity=0.179 Sum_probs=150.7
Q ss_pred CCCcEEeccCCccccHHHHHHHhCCCCCcEecccccccccCcc-cccCCCCcccEEecCCCCCccccccccccCCCCccE
Q 016017 106 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGL-VNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184 (396)
Q Consensus 106 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~ 184 (396)
+++++|++++|. +.......|.++++|++|++++|......+ ..+.++++++++...+++.++...+..+..+++|++
T Consensus 30 ~~l~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~ 108 (350)
T 4ay9_X 30 RNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY 108 (350)
T ss_dssp TTCSEEEEESCC-CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCE
T ss_pred CCCCEEEccCCc-CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccc
Confidence 579999999987 444444568889999999999987544333 357788888776655546677667778888999999
Q ss_pred EEeecCCCChhHHHhccCCCCCCEEEecCC-CCChhhHHHHhcC-CCCCEEECCCCCCChHHHHhhhcCCCCcEEEccC-
Q 016017 185 LQISCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSAL-GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF- 261 (396)
Q Consensus 185 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~- 261 (396)
|++++|.+.......+....++..+++.++ .+.......+..+ ..++.|++++|.+.......+ ...+|+.+.+.+
T Consensus 109 L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f-~~~~L~~l~l~~~ 187 (350)
T 4ay9_X 109 LLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAF-NGTQLDELNLSDN 187 (350)
T ss_dssp EEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSS-TTEEEEEEECTTC
T ss_pred ccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhc-cccchhHHhhccC
Confidence 999999887655444555567777888664 4544333344444 468888898888765443333 345688888864
Q ss_pred CcCcHHHHHHhhCCCCCCEEeccCCCCChhHhHHHhCCCCccEEEcCCCC-CCchhHHhhcCCCCCCEEeccCc
Q 016017 262 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSFT 334 (396)
Q Consensus 262 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~ 334 (396)
+.+.......|..+++|+.|++++|.+...+.. .+.+|+.|.+.++. ++.. ..+..+++|+.+++.++
T Consensus 188 n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~---~~~~L~~L~~l~~~~l~~l--P~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 188 NNLEELPNDVFHGASGPVILDISRTRIHSLPSY---GLENLKKLRARSTYNLKKL--PTLEKLVALMEASLTYP 256 (350)
T ss_dssp TTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS---SCTTCCEEECTTCTTCCCC--CCTTTCCSCCEEECSCH
T ss_pred CcccCCCHHHhccCcccchhhcCCCCcCccChh---hhccchHhhhccCCCcCcC--CCchhCcChhhCcCCCC
Confidence 555544445577888889999988887754332 24566777665553 3221 13567788888888654
No 124
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.49 E-value=4.5e-14 Score=108.26 Aligned_cols=127 Identities=20% Similarity=0.135 Sum_probs=78.4
Q ss_pred CCCCEEECCCCCCC-hHHHHhhhcCCCCcEEEccCCcCcHHHHHHhhCCCCCCEEeccCCCCChhHhHHHhCCCCccEEE
Q 016017 228 GSLFYLNLNRCQLS-DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 306 (396)
Q Consensus 228 ~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 306 (396)
++++.|++++|.+. +..+..+..+++|+.|++++|.+... ..+..+++|++|++++|.+....+..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 45555555555544 22233445556666666666655543 3455666777777777766654455555567777777
Q ss_pred cCCCCCCchh-HHhhcCCCCCCEEeccCcccChhhh---HhhhCCCCCCEeecC
Q 016017 307 LSDTQVGSSG-LRHLSGLTNLESINLSFTGISDGSL---RKLAGLSSLKSLNLD 356 (396)
Q Consensus 307 l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~---~~l~~~~~L~~L~l~ 356 (396)
+++|.+++.. +..+..+++|++|++++|.+++... ..+..+++|+.|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 7777776542 3556677777777777777666443 356667777777765
No 125
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.49 E-value=1.9e-14 Score=128.46 Aligned_cols=218 Identities=11% Similarity=0.101 Sum_probs=112.0
Q ss_pred cccEEecCCCCCccccccccccCCCCccEEEeecCCCChhHHHhccCCCCCCEEEecCCCCChhhHHHHhcCCCCCEEEC
Q 016017 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235 (396)
Q Consensus 156 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 235 (396)
+|+.+.+.. .+......+|.+|++|+.+++..+.++......|. +.+|+.+.+..+ +.......|..+++|+.+.+
T Consensus 158 ~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l 233 (401)
T 4fdw_A 158 TVQEIVFPS--TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEI 233 (401)
T ss_dssp CCCEEECCT--TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEEC
T ss_pred CceEEEeCC--CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEec
Confidence 355555542 23333444555555666666555555444444444 355555555532 33323344555566666665
Q ss_pred CCCCCChHHHHhhhcCCCCcEEEccCCcCcHHHHHHhhCCCCCCEEeccCCCCC-----hhHhHHHhCCCCccEEEcCCC
Q 016017 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG-----DEGLVNLTGLCNLKCLELSDT 310 (396)
Q Consensus 236 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~~L~~L~l~~~ 310 (396)
..+ +.......|.. .+|+.+.+..+ +.......|.+|++|+.+.+.++... ......|..|++|+.+.+.+
T Consensus 234 ~~~-l~~I~~~aF~~-~~L~~i~lp~~-i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~- 309 (401)
T 4fdw_A 234 PEN-VSTIGQEAFRE-SGITTVKLPNG-VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE- 309 (401)
T ss_dssp CTT-CCEECTTTTTT-CCCSEEEEETT-CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-
T ss_pred CCC-ccCcccccccc-CCccEEEeCCC-ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-
Confidence 542 22222233334 45666666432 22222344556666666666555432 23344555666666666663
Q ss_pred CCCchhHHhhcCCCCCCEEeccCcccChhhhHhhhCCCCCCEeecCCCCCcHHHHHHHhcCc-cCCeeecCCCc
Q 016017 311 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT-GLTHLDLFGAR 383 (396)
Q Consensus 311 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~-~L~~l~l~~~~ 383 (396)
+++..+...|.+|++|+.+.+..+ ++......|.+| +|+.+.+.++.+.......+.+++ +++.|.+..+.
T Consensus 310 ~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 310 SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 355555555666666666666443 444445555666 666666666655443334444553 45666655543
No 126
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.49 E-value=4.4e-14 Score=126.10 Aligned_cols=267 Identities=10% Similarity=0.091 Sum_probs=174.3
Q ss_pred CCCCCCeeeccCCcccChhHHHhhhCCCCCcEEeccCCccccHHHHHHHhCCCCCcEecccccccccCcccccCCCCccc
Q 016017 79 DCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158 (396)
Q Consensus 79 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 158 (396)
.+..++.+.+.+ .+.......|.++ +|+.+.+..+ +......+|.++ +|+.+.+.. .........|..+++|+
T Consensus 111 ~~~~l~~i~ip~--~i~~I~~~aF~~~-~L~~i~l~~~--i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~ 183 (401)
T 4fdw_A 111 ILKGYNEIILPN--SVKSIPKDAFRNS-QIAKVVLNEG--LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLK 183 (401)
T ss_dssp ECSSCSEEECCT--TCCEECTTTTTTC-CCSEEECCTT--CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCC
T ss_pred ecCCccEEEECC--ccCEehHhhcccC-CccEEEeCCC--ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCC
Confidence 446677777765 3444444555554 5777777654 333334455554 577777765 22222334577778888
Q ss_pred EEecCCCCCccccccccccCCCCccEEEeecCCCChhHHHhccCCCCCCEEEecCCCCChhhHHHHhcCCCCCEEECCCC
Q 016017 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238 (396)
Q Consensus 159 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 238 (396)
.+++.. +.++......+. +.+|+.+.+..+ +.......|..+++|+.+.+..+ +......+|.. .+|+.+.+..
T Consensus 184 ~l~l~~-n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~- 257 (401)
T 4fdw_A 184 KADLSK-TKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN- 257 (401)
T ss_dssp EEECTT-SCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-
T ss_pred eeecCC-CcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-
Confidence 888875 334444444554 577888887644 55555667777888888888764 33322334444 6788888743
Q ss_pred CCChHHHHhhhcCCCCcEEEccCCcCc-----HHHHHHhhCCCCCCEEeccCCCCChhHhHHHhCCCCccEEEcCCCCCC
Q 016017 239 QLSDDGCEKFSKIGSLKVLNLGFNEIT-----DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 313 (396)
Q Consensus 239 ~~~~~~~~~l~~~~~L~~L~l~~~~~~-----~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 313 (396)
.+.......|..|++|+.+.+.++... ......|.+|++|+.+.+.. .+...+..+|..|.+|+.+.+..+ ++
T Consensus 258 ~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~ 335 (401)
T 4fdw_A 258 GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VT 335 (401)
T ss_dssp TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CC
T ss_pred CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-cc
Confidence 344444567788888888888766443 23345678889999999884 465556667888899999999654 66
Q ss_pred chhHHhhcCCCCCCEEeccCcccChhhhHhhhCCC-CCCEeecCCCCCc
Q 016017 314 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS-SLKSLNLDARQIT 361 (396)
Q Consensus 314 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~~~l~ 361 (396)
......|.+| +|+.+++.++.+.......+..++ +++.|.+..+.+.
T Consensus 336 ~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 336 QINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp EECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred EEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 6666778888 999999998876665555566664 7888888776544
No 127
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.47 E-value=3.7e-14 Score=111.15 Aligned_cols=132 Identities=21% Similarity=0.146 Sum_probs=77.8
Q ss_pred CCCCEEECCCCCCC-hHHHHhhhcCCCCcEEEccCCcCcHHHHHHhhCCCCCCEEeccCCCCChhHhHHHhCCCCccEEE
Q 016017 228 GSLFYLNLNRCQLS-DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 306 (396)
Q Consensus 228 ~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 306 (396)
++|+.|++++|.+. ...+..+..+++|+.|++++|.+... ..+..+++|++|++++|.+....+..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 45555555555544 22223345556666666666655543 3455666666666666666554444455566777777
Q ss_pred cCCCCCCchh-HHhhcCCCCCCEEeccCcccChhhh---HhhhCCCCCCEeecCCCCCc
Q 016017 307 LSDTQVGSSG-LRHLSGLTNLESINLSFTGISDGSL---RKLAGLSSLKSLNLDARQIT 361 (396)
Q Consensus 307 l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~---~~l~~~~~L~~L~l~~~~l~ 361 (396)
+++|.+++.. ...+..+++|++|++++|.+++... ..+..+++|+.|++++|.+.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 7777665532 2455666777777777776665433 35566777777777766554
No 128
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.45 E-value=3.4e-14 Score=127.38 Aligned_cols=218 Identities=16% Similarity=0.140 Sum_probs=92.1
Q ss_pred cCCCCcccEEecCCCCCccccccccccCCCCccEEEeecCCCChhHHHhccCCCCCCEEEecCCCCChhhHHHHhcCCCC
Q 016017 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230 (396)
Q Consensus 151 l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 230 (396)
+..+++|+.+.+.+ .........+.++.+|+.+.+..+ +.......+..+..|+.+.+..+.... ........+|
T Consensus 158 F~~c~~L~~i~l~~--~~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i--~~~~~~~~~l 232 (394)
T 4fs7_A 158 FATCESLEYVSLPD--SMETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYL--GDFALSKTGV 232 (394)
T ss_dssp TTTCTTCCEEECCT--TCCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEE--CTTTTTTCCC
T ss_pred hcccCCCcEEecCC--ccceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEe--ehhhcccCCC
Confidence 45555555555543 122233344555555555555433 222223344445555544443321110 0111123444
Q ss_pred CEEECCCCCCChHHHHhhhcCCCCcEEEccCCcCcHHHHHHhhCCCCCCEEeccCCCCChhHhHHHhCCCCccEEEcCCC
Q 016017 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 310 (396)
Q Consensus 231 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 310 (396)
+.+.+.... .......+..+..++.+.+..+... .....+..+..++.+......+. ...+..+.+|+.+.+.++
T Consensus 233 ~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~ 307 (394)
T 4fs7_A 233 KNIIIPDSF-TELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS 307 (394)
T ss_dssp CEEEECTTC-CEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT
T ss_pred ceEEECCCc-eecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec---cccccccccccccccccc
Confidence 444443221 1111223344455555555433211 11122334444444444332221 122344455555555432
Q ss_pred CCCchhHHhhcCCCCCCEEeccCcccChhhhHhhhCCCCCCEeecCCCCCcHHHHHHHhcCccCCeeecCC
Q 016017 311 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 381 (396)
Q Consensus 311 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~ 381 (396)
++..+...+.+|++|+.+++..+ ++.....++.+|.+|+.+.+..+ +...+..+|.+|++|+.+++..
T Consensus 308 -i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 308 -VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp -CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEG
T ss_pred -cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECC
Confidence 33333344555555555555432 44444444555555555555443 3333344555555555555543
No 129
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.45 E-value=1.6e-15 Score=141.47 Aligned_cols=181 Identities=18% Similarity=0.127 Sum_probs=142.2
Q ss_pred cCCCCCCEEEecCCCCChhhHHHHhcCCCCCEEECCCCC-------------CChHHHHhhhcCCCCcEEE-ccCCcCcH
Q 016017 201 KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-------------LSDDGCEKFSKIGSLKVLN-LGFNEITD 266 (396)
Q Consensus 201 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-------------~~~~~~~~l~~~~~L~~L~-l~~~~~~~ 266 (396)
..++.|+.|+++++.+.. .|..+..+++|+.|+++++. .....+..+..+++|+.|+ ++.+.+..
T Consensus 346 ~~~~~L~~L~Ls~n~L~~-Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTV-LQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 424 (567)
T ss_dssp STTTTSSSCCCCHHHHHH-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred ccCccceeccCChhhHHh-hHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence 567899999999988764 68888999999999986653 2334455667777888887 55443322
Q ss_pred HHHH-----HhhC--CCCCCEEeccCCCCChhHhHHHhCCCCccEEEcCCCCCCchhHHhhcCCCCCCEEeccCcccChh
Q 016017 267 ECLV-----HLKG--LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339 (396)
Q Consensus 267 ~~~~-----~l~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 339 (396)
.... .+.. ...|+.|++++|.+... +. +..+++|+.|++++|.++. .+..+..+++|+.|++++|.+++
T Consensus 425 L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~l-p~-~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~Ls~N~l~~- 500 (567)
T 1dce_A 425 LRSKFLLENSVLKMEYADVRVLHLAHKDLTVL-CH-LEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALEN- 500 (567)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEECTTSCCSSC-CC-GGGGTTCCEEECCSSCCCC-CCGGGGGCTTCCEEECCSSCCCC-
T ss_pred hhhhhhhcccccccCccCceEEEecCCCCCCC-cC-ccccccCcEeecCcccccc-cchhhhcCCCCCEEECCCCCCCC-
Confidence 1100 1111 24699999999998864 33 8889999999999999984 45678899999999999999987
Q ss_pred hhHhhhCCCCCCEeecCCCCCcHHH-HHHHhcCccCCeeecCCCccChH
Q 016017 340 SLRKLAGLSSLKSLNLDARQITDTG-LAALTSLTGLTHLDLFGARITDS 387 (396)
Q Consensus 340 ~~~~l~~~~~L~~L~l~~~~l~~~~-~~~l~~~~~L~~l~l~~~~l~~~ 387 (396)
.+ .++.+++|+.|++++|.+++.. +..+..+++|+.|++++|++++.
T Consensus 501 lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~ 548 (567)
T 1dce_A 501 VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548 (567)
T ss_dssp CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCC
Confidence 34 7889999999999999999876 78899999999999999999765
No 130
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.43 E-value=8e-14 Score=110.07 Aligned_cols=132 Identities=15% Similarity=0.130 Sum_probs=59.2
Q ss_pred cCCCCCEEECCCCCCChHHHHhhhcC-CCCcEEEccCCcCcHHHHHHhhCCCCCCEEeccCCCCChhHhHHHhCCCCccE
Q 016017 226 ALGSLFYLNLNRCQLSDDGCEKFSKI-GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 304 (396)
Q Consensus 226 ~~~~L~~L~l~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 304 (396)
.+++|+.|++++|.+... ..+..+ ++|+.|++++|.+... ..+..+++|++|++++|.+....+..+..+++|++
T Consensus 17 ~~~~L~~L~l~~n~l~~i--~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVI--ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp CTTSCEEEECTTSCCCSC--CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred CcCCceEEEeeCCCCchh--HHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 345566666666554432 122222 2555555555554432 23444455555555555554332223344455555
Q ss_pred EEcCCCCCCchhH-HhhcCCCCCCEEeccCcccChhhhH---hhhCCCCCCEeecCCCCCc
Q 016017 305 LELSDTQVGSSGL-RHLSGLTNLESINLSFTGISDGSLR---KLAGLSSLKSLNLDARQIT 361 (396)
Q Consensus 305 L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~---~l~~~~~L~~L~l~~~~l~ 361 (396)
|++++|.++.... ..+..+++|+.|++++|.++..... .+..+++|+.|++++|...
T Consensus 93 L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 93 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred EECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 5555555433221 2334445555555555444332111 2334444444444444433
No 131
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.39 E-value=3.1e-13 Score=121.17 Aligned_cols=238 Identities=16% Similarity=0.134 Sum_probs=162.7
Q ss_pred HHHhCCCCCcEecccccccccCcccccCCCCcccEEecCCCCCccccccccccCCCCccEEEeecCCCChhHHHhccCCC
Q 016017 125 KAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQ 204 (396)
Q Consensus 125 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 204 (396)
.+|.+|.+|+.+.+.+.. .......+..+.+|+.+.+.. .+......++.++..|+.+.+..+.... ........
T Consensus 156 ~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~--~~~~I~~~~F~~~~~L~~i~~~~~~~~i--~~~~~~~~ 230 (394)
T 4fs7_A 156 EAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPR--NLKIIRDYCFAECILLENMEFPNSLYYL--GDFALSKT 230 (394)
T ss_dssp TTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCT--TCCEECTTTTTTCTTCCBCCCCTTCCEE--CTTTTTTC
T ss_pred hhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCC--CceEeCchhhccccccceeecCCCceEe--ehhhcccC
Confidence 457788999999887532 222334578889999998875 2555556677888888888876553221 11233456
Q ss_pred CCCEEEecCCCCChhhHHHHhcCCCCCEEECCCCCCChHHHHhhhcCCCCcEEEccCCcCcHHHHHHhhCCCCCCEEecc
Q 016017 205 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284 (396)
Q Consensus 205 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 284 (396)
+|+.+.+.... .......+..+..++.+.+..+.. ......+..+..++.+......+.. ..+..+.+|+.+.+.
T Consensus 231 ~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~-~i~~~~F~~~~~l~~~~~~~~~i~~---~~F~~~~~L~~i~l~ 305 (394)
T 4fs7_A 231 GVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNKL-RIGGSLFYNCSGLKKVIYGSVIVPE---KTFYGCSSLTEVKLL 305 (394)
T ss_dssp CCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTTC-EECSCTTTTCTTCCEEEECSSEECT---TTTTTCTTCCEEEEC
T ss_pred CCceEEECCCc-eecccccccccccceeEEcCCCcc-eeeccccccccccceeccCceeecc---ccccccccccccccc
Confidence 88888886542 222234566788899888876532 2233456678888888776654332 356788899999887
Q ss_pred CCCCChhHhHHHhCCCCccEEEcCCCCCCchhHHhhcCCCCCCEEeccCcccChhhhHhhhCCCCCCEeecCCCCCcHHH
Q 016017 285 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 364 (396)
Q Consensus 285 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~ 364 (396)
.+ +...+..+|.++.+|+.+.+.++ ++..+...+.+|++|+.+.+..+ ++.....++.+|++|+.+.+..+ +...
T Consensus 306 ~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~~~- 380 (394)
T 4fs7_A 306 DS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LEQY- 380 (394)
T ss_dssp TT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GGGG-
T ss_pred cc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CEEh-
Confidence 54 44445567888899999999754 66666778889999999999775 66666778889999999999754 2222
Q ss_pred HHHHhcCccCCee
Q 016017 365 LAALTSLTGLTHL 377 (396)
Q Consensus 365 ~~~l~~~~~L~~l 377 (396)
...+.++++|+.+
T Consensus 381 ~~~F~~c~~L~~I 393 (394)
T 4fs7_A 381 RYDFEDTTKFKWI 393 (394)
T ss_dssp GGGBCTTCEEEEE
T ss_pred hheecCCCCCcEE
Confidence 2456778887765
No 132
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.39 E-value=9.8e-14 Score=111.11 Aligned_cols=128 Identities=20% Similarity=0.168 Sum_probs=91.5
Q ss_pred CEEECCCCCCChHHHHhhhcCCCCcEEEccCCcCcHHHHH-HhhCCCCCCEEeccCCCCChhHhHHHhCCCCccEEEcCC
Q 016017 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV-HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 309 (396)
Q Consensus 231 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 309 (396)
+.++++++.+.... ..+ ..+++.|++++|.+....+. .+..+++|++|++++|.+....+..+..+++|++|++++
T Consensus 11 ~~l~~s~~~l~~ip-~~~--~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIP-RDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSCC-SCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcCc-cCC--CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 56777777664332 111 23788888888877654332 366778888888888887766666777778888888888
Q ss_pred CCCCchhHHhhcCCCCCCEEeccCcccChhhhHhhhCCCCCCEeecCCCCCc
Q 016017 310 TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 361 (396)
Q Consensus 310 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~ 361 (396)
|.++......+..+++|++|++++|.++...+..+..+++|+.|++++|.+.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 8877766666677788888888888877766667777788888888887765
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.36 E-value=6.4e-13 Score=104.98 Aligned_cols=129 Identities=19% Similarity=0.102 Sum_probs=82.5
Q ss_pred CEEECCCCCCChHHHHhhhcCCCCcEEEccCCcCcHHHHHHhhCCCCCCEEeccCCCCChhHhHHHhCCCCccEEEcCCC
Q 016017 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 310 (396)
Q Consensus 231 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 310 (396)
+.++++++.+..... ...++|+.|+++++.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|
T Consensus 10 ~~l~~~~~~l~~~p~---~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPT---GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TEEECCSSCCSSCCT---TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCCccCCC---CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 556666665543321 12356777777777666544444566777777777777766554455566777777777777
Q ss_pred CCCchhHHhhcCCCCCCEEeccCcccChhhhHhhhCCCCCCEeecCCCCCcH
Q 016017 311 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362 (396)
Q Consensus 311 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~ 362 (396)
.++......+..+++|++|++++|.++......+..+++|+.|++++|.+..
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 7766555555667777777777777665444445566777777777776653
No 134
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.36 E-value=8.8e-13 Score=104.05 Aligned_cols=133 Identities=17% Similarity=0.158 Sum_probs=73.9
Q ss_pred cCCCCcEEEccCCcCcHHHHHHhhCC-CCCCEEeccCCCCChhHhHHHhCCCCccEEEcCCCCCCchhHHhhcCCCCCCE
Q 016017 250 KIGSLKVLNLGFNEITDECLVHLKGL-TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 328 (396)
Q Consensus 250 ~~~~L~~L~l~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 328 (396)
++++|+.|++++|.+... + .+..+ ++|+.|++++|.+.+. ..+..+++|++|++++|.++......+..+++|++
T Consensus 17 ~~~~L~~L~l~~n~l~~i-~-~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVI-E-NLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp CTTSCEEEECTTSCCCSC-C-CGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred CcCCceEEEeeCCCCchh-H-HhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 455666666666655532 2 22222 3666666666666543 34555666666666666665443333455666666
Q ss_pred EeccCcccChhhh-HhhhCCCCCCEeecCCCCCcHHHHH---HHhcCccCCeeecCCCccCh
Q 016017 329 INLSFTGISDGSL-RKLAGLSSLKSLNLDARQITDTGLA---ALTSLTGLTHLDLFGARITD 386 (396)
Q Consensus 329 L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~l~~~~~~---~l~~~~~L~~l~l~~~~l~~ 386 (396)
|++++|.+++... ..+..+++|+.|++++|++...... .+..+++|+.|++++|.+.+
T Consensus 93 L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 93 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred EECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 6666666654221 2455566666666666666543221 35566666666666665544
No 135
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.36 E-value=5.2e-12 Score=110.66 Aligned_cols=145 Identities=18% Similarity=0.164 Sum_probs=78.5
Q ss_pred hhcCCCCcEEEccCCcCcHHHHHHhhCCCCCCEEeccCCCCChhHhHHHh--CCCCccEEEcCCC--C-CCchhH----H
Q 016017 248 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT--GLCNLKCLELSDT--Q-VGSSGL----R 318 (396)
Q Consensus 248 l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~--~-~~~~~~----~ 318 (396)
+..+|+|+.|.++++.-... + .+ ..++|++|.+..+.+.......+. .+|+|++|+|+.+ . ..+... .
T Consensus 168 l~~~P~L~~L~L~g~~~l~l-~-~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~ 244 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNNLSI-G-KK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP 244 (362)
T ss_dssp HHTCTTCCEEEEECCBTCBC-C-SC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG
T ss_pred HhcCCCCcEEEEeCCCCcee-c-cc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH
Confidence 34455566665554410000 1 11 245666666666666555444443 4566666665321 1 011000 1
Q ss_pred hh--cCCCCCCEEeccCcccChhhhHhhh---CCCCCCEeecCCCCCcHHHHHHH----hcCccCCeeecCCCccChHHH
Q 016017 319 HL--SGLTNLESINLSFTGISDGSLRKLA---GLSSLKSLNLDARQITDTGLAAL----TSLTGLTHLDLFGARITDSGA 389 (396)
Q Consensus 319 ~l--~~~~~L~~L~l~~~~~~~~~~~~l~---~~~~L~~L~l~~~~l~~~~~~~l----~~~~~L~~l~l~~~~l~~~~~ 389 (396)
.+ ..+|+|++|++.+|.+++.....+. .+++|+.|+|+.|.+++.++..+ ..+++|+.|++++|.+++.++
T Consensus 245 ~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~ 324 (362)
T 2ra8_A 245 LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMK 324 (362)
T ss_dssp GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHH
T ss_pred HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHH
Confidence 11 2467777777777766654443333 35677777777777776554443 335677777777777777777
Q ss_pred HHHHhc
Q 016017 390 AYLRSK 395 (396)
Q Consensus 390 ~~l~~~ 395 (396)
..+.++
T Consensus 325 ~~l~~a 330 (362)
T 2ra8_A 325 KELQKS 330 (362)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766653
No 136
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.35 E-value=1.1e-14 Score=117.44 Aligned_cols=134 Identities=26% Similarity=0.240 Sum_probs=78.6
Q ss_pred hhhcCCCCcEEEccCCcCcHHHHHHhhCCCCCCEEeccCCCCChhHhHHHhCCCCccEEEcCCCCCCchhHHhhcCCCCC
Q 016017 247 KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 326 (396)
Q Consensus 247 ~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 326 (396)
.+..+++|+.|++++|.+... + .+..+++|+.|++++|.+... +..+..+++|+.|++++|.+++. ..+..+++|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l-~-~~~~l~~L~~L~l~~n~l~~l-~~~~~~~~~L~~L~L~~N~l~~l--~~~~~l~~L 117 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKI-S-SLSGMENLRILSLGRNLIKKI-ENLDAVADTLEELWISYNQIASL--SGIEKLVNL 117 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCC-C-CHHHHTTCCEEEEEEEEECSC-SSHHHHHHHCSEEEEEEEECCCH--HHHHHHHHS
T ss_pred HHhcCCCCCEEECCCCCCccc-c-ccccCCCCCEEECCCCCcccc-cchhhcCCcCCEEECcCCcCCcC--CccccCCCC
Confidence 445555555555555554432 2 444555666666666655422 22333345667777777666553 245556677
Q ss_pred CEEeccCcccChhhh-HhhhCCCCCCEeecCCCCCcHHHH----------HHHhcCccCCeeecCCCccChH
Q 016017 327 ESINLSFTGISDGSL-RKLAGLSSLKSLNLDARQITDTGL----------AALTSLTGLTHLDLFGARITDS 387 (396)
Q Consensus 327 ~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~l~~~~~----------~~l~~~~~L~~l~l~~~~l~~~ 387 (396)
++|++++|.+++... ..+..+++|+.|++++|.+.+..+ ..+..+++|+.|+ ++.+++.
T Consensus 118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~~ 187 (198)
T 1ds9_A 118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDVD 187 (198)
T ss_dssp SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTTT
T ss_pred CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCHH
Confidence 777777776665332 455667777777777777655422 3467788888877 6666543
No 137
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.34 E-value=6.9e-13 Score=106.14 Aligned_cols=129 Identities=22% Similarity=0.225 Sum_probs=106.0
Q ss_pred CEEEecCCCCChhhHHHHhcCCCCCEEECCCCCCChHHHH-hhhcCCCCcEEEccCCcCcHHHHHHhhCCCCCCEEeccC
Q 016017 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE-KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285 (396)
Q Consensus 207 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 285 (396)
+.++++++.+... +..+ ..+++.|++++|.+....+. .+..+++|+.|++++|.+....+..+..+++|+.|++++
T Consensus 11 ~~l~~s~~~l~~i-p~~~--~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEI-PRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSC-CSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcC-ccCC--CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 6788888877543 2222 34899999999988765543 478899999999999998877677788999999999999
Q ss_pred CCCChhHhHHHhCCCCccEEEcCCCCCCchhHHhhcCCCCCCEEeccCcccCh
Q 016017 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338 (396)
Q Consensus 286 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 338 (396)
|.+....+..+..+++|++|++++|.++...+..+..+++|++|++++|.+..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 99987777778888999999999999988777778889999999999998764
No 138
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.33 E-value=6.1e-13 Score=106.42 Aligned_cols=127 Identities=20% Similarity=0.141 Sum_probs=85.6
Q ss_pred CEEECCCCCCChHHHHhhhcCCCCcEEEccCCcCcHHHHHHhhCCCCCCEEeccCCCCChhHhHHHhCCCCccEEEcCCC
Q 016017 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 310 (396)
Q Consensus 231 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 310 (396)
+.++++++.+.... .. -.++++.|++++|.+... +..+..+++|+.|++++|.+....+..|..+++|++|++++|
T Consensus 13 ~~l~~~~~~l~~ip-~~--~~~~l~~L~L~~n~i~~i-p~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKVLP-KG--IPRDVTELYLDGNQFTLV-PKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSSCC-SC--CCTTCCEEECCSSCCCSC-CGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCcCC-CC--CCCCCCEEECCCCcCchh-HHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 45667666655332 11 134677777777776543 356677777777777777777665566677777777777777
Q ss_pred CCCchhHHhhcCCCCCCEEeccCcccChhhhHhhhCCCCCCEeecCCCCCc
Q 016017 311 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 361 (396)
Q Consensus 311 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~ 361 (396)
.++......+..+++|++|++++|.++......+..+++|+.|++++|++.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 777666666677777777777777777655555666777777777776654
No 139
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.31 E-value=5.4e-12 Score=113.06 Aligned_cols=311 Identities=14% Similarity=0.147 Sum_probs=168.4
Q ss_pred CccEEEeecCCCChHHHHHhhCCCCCCeeeccCC--cccChhHHHhhhCCCCCcEEeccCCccccHHHHHHHhCCCCCcE
Q 016017 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC--IQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135 (396)
Q Consensus 58 ~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~--~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 135 (396)
.|+.+.+..+ ++.....+|.+|.+|+.+.+... ..+...+..+|..|.+|+.+.+... +.......+..|.+|+.
T Consensus 65 ~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~--~~~I~~~aF~~c~~L~~ 141 (394)
T 4gt6_A 65 VLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS--VTEIDSEAFHHCEELDT 141 (394)
T ss_dssp CCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT--CSEECTTTTTTCTTCCE
T ss_pred cCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc--cceehhhhhhhhccccc
Confidence 4666666543 44444556667777777766432 1233344445566666666665543 22223344556667776
Q ss_pred ecccccccccCcccccCCCCcccEEecCCCCCccccccccccCCCCccEEEeecCCCChhHHHhccCCCCCCEEEecCCC
Q 016017 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215 (396)
Q Consensus 136 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 215 (396)
+.+... ........+..+..|+.+.+.. .++.....++. ..+|+.+.+... +.......+..+.+++........
T Consensus 142 i~lp~~-~~~I~~~~F~~c~~L~~i~~~~--~~~~I~~~aF~-~~~l~~i~ip~~-~~~i~~~af~~c~~l~~~~~~~~~ 216 (394)
T 4gt6_A 142 VTIPEG-VTSVADGMFSYCYSLHTVTLPD--SVTAIEERAFT-GTALTQIHIPAK-VTRIGTNAFSECFALSTITSDSES 216 (394)
T ss_dssp EECCTT-CCEECTTTTTTCTTCCEEECCT--TCCEECTTTTT-TCCCSEEEECTT-CCEECTTTTTTCTTCCEEEECCSS
T ss_pred ccccce-eeeecccceecccccccccccc--eeeEecccccc-ccceeEEEECCc-ccccccchhhhccccceecccccc
Confidence 666532 1112223355666676666653 23333333343 245666666543 222223445566666666554332
Q ss_pred CChhhHHHH-------------hcCCCCCEEECCCCCCChHHHHhhhcCCCCcEEEccCCcCcHHHHHHhhCCCCCCEEe
Q 016017 216 VTAACLDSL-------------SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282 (396)
Q Consensus 216 ~~~~~~~~~-------------~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 282 (396)
........+ .....+..+.+.. .+.......+..+..|+.+.+..... ......+.++++|+.+.
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~ 294 (394)
T 4gt6_A 217 YPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIE 294 (394)
T ss_dssp SCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEE
T ss_pred cccccceeecccccccccccccccccccceEEcCC-cceEcccceeeecccccEEecccccc-eecCccccccccccccc
Confidence 111000000 0112233333321 11112234567788888888865422 22234567788888888
Q ss_pred ccCCCCChhHhHHHhCCCCccEEEcCCCCCCchhHHhhcCCCCCCEEeccCcccChhhhHhhhCCCCCCEeecCCCCCcH
Q 016017 283 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362 (396)
Q Consensus 283 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~ 362 (396)
+.. .+...+..+|.+|.+|+.+.+..+ ++..+...|.+|++|+.+.+..+ ++.....+|.+|++|+.+++.++...
T Consensus 295 l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~- 370 (394)
T 4gt6_A 295 FSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ- 370 (394)
T ss_dssp CCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH-
T ss_pred CCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee-
Confidence 864 344444556778888999988764 56566677888899999988654 66666777888899999998875422
Q ss_pred HHHHHHhcCccCCeeecCCCcc
Q 016017 363 TGLAALTSLTGLTHLDLFGARI 384 (396)
Q Consensus 363 ~~~~~l~~~~~L~~l~l~~~~l 384 (396)
...+..+.+|+.+.+..+.+
T Consensus 371 --~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 371 --WNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp --HHTCBCCCCC----------
T ss_pred --hhhhhccCCCCEEEeCCCCE
Confidence 34566778888888776543
No 140
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.31 E-value=2.9e-12 Score=101.20 Aligned_cols=129 Identities=23% Similarity=0.123 Sum_probs=73.3
Q ss_pred CEEEecCCCCChhhHHHHhcCCCCCEEECCCCCCChHHHHhhhcCCCCcEEEccCCcCcHHHHHHhhCCCCCCEEeccCC
Q 016017 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 286 (396)
Q Consensus 207 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 286 (396)
+.++++++.+... +. ...++|+.|+++++.+.......+..+++|++|++++|.+....+..+..+++|+.|++++|
T Consensus 10 ~~l~~~~~~l~~~-p~--~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 10 TEIRCNSKGLTSV-PT--GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TEEECCSSCCSSC-CT--TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCCccC-CC--CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 4555555544432 11 12356666666666655444444556666666666666655443334556666666666666
Q ss_pred CCChhHhHHHhCCCCccEEEcCCCCCCchhHHhhcCCCCCCEEeccCcccCh
Q 016017 287 GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338 (396)
Q Consensus 287 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 338 (396)
.+....+..+..+++|++|++++|.++......+..+++|++|++++|.+..
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 6655444445556666666666666655444444556666666666665543
No 141
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.28 E-value=4.8e-12 Score=101.17 Aligned_cols=127 Identities=16% Similarity=0.150 Sum_probs=99.1
Q ss_pred CEEEecCCCCChhhHHHHhcCCCCCEEECCCCCCChHHHHhhhcCCCCcEEEccCCcCcHHHHHHhhCCCCCCEEeccCC
Q 016017 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 286 (396)
Q Consensus 207 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 286 (396)
+.++++++.+... +.. -.++++.|++++|.+.... ..+..+++|+.|++++|.+....+..+.++++|++|++++|
T Consensus 13 ~~l~~~~~~l~~i-p~~--~~~~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKVL-PKG--IPRDVTELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSSC-CSC--CCTTCCEEECCSSCCCSCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCcC-CCC--CCCCCCEEECCCCcCchhH-HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 5677777766543 221 2368899999988876443 57788889999999988887765666888899999999999
Q ss_pred CCChhHhHHHhCCCCccEEEcCCCCCCchhHHhhcCCCCCCEEeccCcccC
Q 016017 287 GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 337 (396)
Q Consensus 287 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 337 (396)
.+....+..+..+++|+.|++++|.++......+..+++|+.|++++|.+.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 888777777888889999999999888766666778889999999988664
No 142
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.27 E-value=6e-14 Score=113.09 Aligned_cols=133 Identities=23% Similarity=0.262 Sum_probs=90.1
Q ss_pred HHHhcCCCCCEEECCCCCCChHHHHhhhcCCCCcEEEccCCcCcHHHHHHhhCCCCCCEEeccCCCCChhHhHHHhCCCC
Q 016017 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN 301 (396)
Q Consensus 222 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 301 (396)
..+..+++|+.|++++|.+.... .+..+++|+.|++++|.+... +..+..+++|+.|++++|.+.... .+..+++
T Consensus 42 ~~~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~~l-~~~~~~~~~L~~L~L~~N~l~~l~--~~~~l~~ 116 (198)
T 1ds9_A 42 ATLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKI-ENLDAVADTLEELWISYNQIASLS--GIEKLVN 116 (198)
T ss_dssp HHHHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEECSC-SSHHHHHHHCSEEEEEEEECCCHH--HHHHHHH
T ss_pred HHHhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCcccc-cchhhcCCcCCEEECcCCcCCcCC--ccccCCC
Confidence 36667777777777777655522 566677777887777766532 334455577888888888776532 4666778
Q ss_pred ccEEEcCCCCCCchhH-HhhcCCCCCCEEeccCcccChhhhH----------hhhCCCCCCEeecCCCCCc
Q 016017 302 LKCLELSDTQVGSSGL-RHLSGLTNLESINLSFTGISDGSLR----------KLAGLSSLKSLNLDARQIT 361 (396)
Q Consensus 302 L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~----------~l~~~~~L~~L~l~~~~l~ 361 (396)
|++|++++|.++.... ..+..+++|++|++++|.+.+..+. .+..+++|+.|+ ++.++
T Consensus 117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 8888888888776443 5667788888888888877554332 256788888876 55444
No 143
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.26 E-value=9.8e-12 Score=95.67 Aligned_cols=88 Identities=27% Similarity=0.444 Sum_probs=64.2
Q ss_pred CccEEEcCCCCCCchhHHhhcCCCCCCEEeccCc-ccChhhhHhhhCC----CCCCEeecCCC-CCcHHHHHHHhcCccC
Q 016017 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT-GISDGSLRKLAGL----SSLKSLNLDAR-QITDTGLAALTSLTGL 374 (396)
Q Consensus 301 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~l~~~----~~L~~L~l~~~-~l~~~~~~~l~~~~~L 374 (396)
.|++|++++|.+++.+...+..|++|++|++++| .+++.....++.+ ++|+.|++++| .+++.+...+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 5777777777777777777777777777777777 5777777777653 46777777776 4777777777777777
Q ss_pred CeeecCCC-ccChHH
Q 016017 375 THLDLFGA-RITDSG 388 (396)
Q Consensus 375 ~~l~l~~~-~l~~~~ 388 (396)
++|++++| .+++.+
T Consensus 142 ~~L~L~~c~~Itd~g 156 (176)
T 3e4g_A 142 KYLFLSDLPGVKEKE 156 (176)
T ss_dssp CEEEEESCTTCCCHH
T ss_pred CEEECCCCCCCCchH
Confidence 77777777 577765
No 144
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.23 E-value=1.2e-12 Score=126.00 Aligned_cols=115 Identities=22% Similarity=0.175 Sum_probs=48.8
Q ss_pred HhcCCCCCEEECCCCCCChHHHHhhhcCCCCcEEEccCCcCcHHHHHHhhCCCCCCEEeccCCCCChhHhHHHhCCCCcc
Q 016017 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 303 (396)
Q Consensus 224 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 303 (396)
+..++.|+.|++++|.+... +..+..+++|+.|++++|.+. ..+..+..+++|+.|++++|.+. ..+..+..+++|+
T Consensus 220 ~~~l~~L~~L~Ls~n~l~~l-~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~ 296 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQIFNI-SANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLK 296 (727)
T ss_dssp --CCCCCCEEECTTSCCSCC-CGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCS
T ss_pred hccCCCCcEEECCCCCCCCC-ChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCC
Confidence 34445555555555444321 122234444555555544444 22333444444455555444444 2233344444444
Q ss_pred EEEcCCCCCCchhHHhhcCCCCCCEEeccCcccChhhhH
Q 016017 304 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 342 (396)
Q Consensus 304 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 342 (396)
+|++++|.++.. +..+..+++|++|+|++|.+++..+.
T Consensus 297 ~L~L~~N~l~~l-p~~~~~l~~L~~L~L~~N~l~~~~p~ 334 (727)
T 4b8c_D 297 YFYFFDNMVTTL-PWEFGNLCNLQFLGVEGNPLEKQFLK 334 (727)
T ss_dssp EEECCSSCCCCC-CSSTTSCTTCCCEECTTSCCCSHHHH
T ss_pred EEECCCCCCCcc-ChhhhcCCCccEEeCCCCccCCCChH
Confidence 444444444322 22244444444444444444443333
No 145
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.23 E-value=1.9e-10 Score=91.11 Aligned_cols=120 Identities=18% Similarity=0.104 Sum_probs=80.2
Q ss_pred HHHhhCCCCCCEEeccCC-CCChhHhHH----HhCCCCccEEEcCCCCCCchhHHhh----cCCCCCCEEeccCcccChh
Q 016017 269 LVHLKGLTNLESLNLDSC-GIGDEGLVN----LTGLCNLKCLELSDTQVGSSGLRHL----SGLTNLESINLSFTGISDG 339 (396)
Q Consensus 269 ~~~l~~~~~L~~L~l~~~-~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~~~~~l----~~~~~L~~L~l~~~~~~~~ 339 (396)
...+...++|++|++++| .+.+.+... +...++|++|++++|.+++.+...+ ...++|++|++++|.+++.
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 344556667777777776 666544333 3445677777777777776655443 4457788888888887776
Q ss_pred hhHhh----hCCCCCCEeec--CCCCCcHHHHH----HHhcCccCCeeecCCCccChHH
Q 016017 340 SLRKL----AGLSSLKSLNL--DARQITDTGLA----ALTSLTGLTHLDLFGARITDSG 388 (396)
Q Consensus 340 ~~~~l----~~~~~L~~L~l--~~~~l~~~~~~----~l~~~~~L~~l~l~~~~l~~~~ 388 (396)
+...+ ...++|+.|++ ++|.+++.+.. .+...++|++|++++|.+++.+
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~~ 167 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPRL 167 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHHH
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChHH
Confidence 54433 34677888888 77888876543 3345578888888888887776
No 146
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.23 E-value=7.4e-13 Score=127.45 Aligned_cols=117 Identities=19% Similarity=0.170 Sum_probs=57.8
Q ss_pred hccCCCCCCEEEecCCCCChhhHHHHhcCCCCCEEECCCCCCChHHHHhhhcCCCCcEEEccCCcCcHHHHHHhhCCCCC
Q 016017 199 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 278 (396)
Q Consensus 199 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 278 (396)
.+..++.|+.|++++|.+.. .+..+..+++|+.|++++|.+. ..+..+..+++|+.|++++|.+.. .|..+..+++|
T Consensus 219 ~~~~l~~L~~L~Ls~n~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L 295 (727)
T 4b8c_D 219 SKYDDQLWHALDLSNLQIFN-ISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQL 295 (727)
T ss_dssp ---CCCCCCEEECTTSCCSC-CCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSS-CCSSGGGGTTC
T ss_pred hhccCCCCcEEECCCCCCCC-CChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCc-cChhhcCCCCC
Confidence 34445555555555554442 2222334555555555555554 223344555555555555555542 24445555556
Q ss_pred CEEeccCCCCChhHhHHHhCCCCccEEEcCCCCCCchhHHh
Q 016017 279 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 319 (396)
Q Consensus 279 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 319 (396)
++|++++|.+... +..|..+++|+.|++++|.+++..+..
T Consensus 296 ~~L~L~~N~l~~l-p~~~~~l~~L~~L~L~~N~l~~~~p~~ 335 (727)
T 4b8c_D 296 KYFYFFDNMVTTL-PWEFGNLCNLQFLGVEGNPLEKQFLKI 335 (727)
T ss_dssp SEEECCSSCCCCC-CSSTTSCTTCCCEECTTSCCCSHHHHH
T ss_pred CEEECCCCCCCcc-ChhhhcCCCccEEeCCCCccCCCChHH
Confidence 6666655555422 333555556666666666555444333
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.21 E-value=2.3e-10 Score=100.24 Aligned_cols=158 Identities=22% Similarity=0.169 Sum_probs=91.3
Q ss_pred HHHhcCCCCCEEECCCCCCChHHHHhhhcCCCCcEEEccCCcCcHHHHHHhh--CCCCCCEEeccCC--CC-Ch----hH
Q 016017 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK--GLTNLESLNLDSC--GI-GD----EG 292 (396)
Q Consensus 222 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~--~~~~L~~L~l~~~--~~-~~----~~ 292 (396)
..+..+|+|+.|++.++.-.. .+ .+ ..++|+.|++..+.+.......+. .+|+|++|.+..+ .. .+ ..
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l~-l~-~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l 242 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNLS-IG-KK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVF 242 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTCB-CC-SC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGT
T ss_pred HHHhcCCCCcEEEEeCCCCce-ec-cc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHH
Confidence 344555666666665542000 00 11 255666666666665544444443 5667777666421 10 00 00
Q ss_pred hHHH--hCCCCccEEEcCCCCCCchhHHhh---cCCCCCCEEeccCcccChhhhHhhh----CCCCCCEeecCCCCCcHH
Q 016017 293 LVNL--TGLCNLKCLELSDTQVGSSGLRHL---SGLTNLESINLSFTGISDGSLRKLA----GLSSLKSLNLDARQITDT 363 (396)
Q Consensus 293 ~~~~--~~~~~L~~L~l~~~~~~~~~~~~l---~~~~~L~~L~l~~~~~~~~~~~~l~----~~~~L~~L~l~~~~l~~~ 363 (396)
...+ ..+|+|++|.+.+|.+++.....+ ..+++|++|+++.|.+++.++..+. .+++|+.|++++|.+++.
T Consensus 243 ~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~ 322 (362)
T 2ra8_A 243 RPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE 322 (362)
T ss_dssp GGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHH
T ss_pred HHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHH
Confidence 0111 246788888888887765544444 2467888888888888776554443 458888888888888877
Q ss_pred HHHHHhcCccCCeeecCCCc
Q 016017 364 GLAALTSLTGLTHLDLFGAR 383 (396)
Q Consensus 364 ~~~~l~~~~~L~~l~l~~~~ 383 (396)
....+...- ..++++++++
T Consensus 323 ~~~~l~~al-g~~~~~~~~~ 341 (362)
T 2ra8_A 323 MKKELQKSL-PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHHHC-CSEEECCSBC
T ss_pred HHHHHHHHc-CCEEEecCCc
Confidence 766665411 3557777765
No 148
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.18 E-value=4.7e-11 Score=91.88 Aligned_cols=90 Identities=21% Similarity=0.320 Sum_probs=78.2
Q ss_pred CCccEEEeecCCCChHHHHHhhCCCCCCeeeccCCcccChhHHHhhhCC----CCCcEEeccCCccccHHHHHHHhCCCC
Q 016017 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGL----SNLTSLSFRRNNAITAQGMKAFAGLIN 132 (396)
Q Consensus 57 ~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~----~~L~~L~l~~~~~~~~~~~~~~~~~~~ 132 (396)
-.|++|+++++.+++.....++++++|++|+|++|..+++.+...++.+ ++|++|++++|..+++.+...+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 3689999999999999998899999999999999988999988888875 479999999998888888888888999
Q ss_pred CcEecccccccccC
Q 016017 133 LVKLDLERCTRIHG 146 (396)
Q Consensus 133 L~~L~l~~~~~~~~ 146 (396)
|++|++++|+.+..
T Consensus 141 L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 141 LKYLFLSDLPGVKE 154 (176)
T ss_dssp CCEEEEESCTTCCC
T ss_pred CCEEECCCCCCCCc
Confidence 99999988875543
No 149
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.14 E-value=2.1e-11 Score=95.28 Aligned_cols=105 Identities=16% Similarity=0.085 Sum_probs=70.0
Q ss_pred CcEEEccCCcCcHHHHHHhhCCCCCCEEeccCCCCChhHhHHHhCCCCccEEEcCCCCCCchhHHhhcCCCCCCEEeccC
Q 016017 254 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333 (396)
Q Consensus 254 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 333 (396)
.+.++++++.+... |..+ .++|+.|++++|.+....+..+..+++|++|++++|.++......+..+++|++|++++
T Consensus 11 ~~~l~~s~n~l~~i-p~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLASV-PTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSSC-CSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCcc-CccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 45677777666543 2221 36777777777777665556666777777777777777665555566677777777777
Q ss_pred cccChhhhHhhhCCCCCCEeecCCCCCc
Q 016017 334 TGISDGSLRKLAGLSSLKSLNLDARQIT 361 (396)
Q Consensus 334 ~~~~~~~~~~l~~~~~L~~L~l~~~~l~ 361 (396)
|.++...+..+..+++|+.|++++|++.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 7776655555666777777777777654
No 150
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.11 E-value=1.8e-10 Score=103.13 Aligned_cols=313 Identities=14% Similarity=0.115 Sum_probs=198.0
Q ss_pred ccccC--ceeEeccCCC-CCCCchHHHHHHhcCCCccEEEeecC---CCChHHHHHhhCCCCCCeeeccCCcccChhHHH
Q 016017 27 AFRDC--ALQDLCLGQY-PGVNDKWMDVIASQGSSLLSVDLSGS---DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLE 100 (396)
Q Consensus 27 ~~~~~--~l~~l~l~~~-~~~~~~~~~~~~~~~~~l~~L~l~~~---~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 100 (396)
+|..| .++.+.+..- ..+.+ .....|.+|+.+.+..+ .++.....+|.+|.+|+.+.+.. .+......
T Consensus 58 aF~~~~~~L~sI~iP~svt~Ig~----~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~--~~~~I~~~ 131 (394)
T 4gt6_A 58 VFCNYKYVLTSVQIPDTVTEIGS----NAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILD--SVTEIDSE 131 (394)
T ss_dssp TTTTCCSCCCEEEECTTCCEECT----TTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGT--TCSEECTT
T ss_pred hccCCCCcCEEEEECCCeeEEhH----HHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCC--ccceehhh
Confidence 45555 3777777542 22222 12357899999999865 35555567888999999998876 35555566
Q ss_pred hhhCCCCCcEEeccCCccccHHHHHHHhCCCCCcEecccccccccCcccccCCCCcccEEecCCCCCccccccccccCCC
Q 016017 101 HLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180 (396)
Q Consensus 101 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 180 (396)
.+..+.+|+.+.+... +.......+..+..|+.+.+.... .......+. ..+|+.+.+.. ........++..+.
T Consensus 132 aF~~c~~L~~i~lp~~--~~~I~~~~F~~c~~L~~i~~~~~~-~~I~~~aF~-~~~l~~i~ip~--~~~~i~~~af~~c~ 205 (394)
T 4gt6_A 132 AFHHCEELDTVTIPEG--VTSVADGMFSYCYSLHTVTLPDSV-TAIEERAFT-GTALTQIHIPA--KVTRIGTNAFSECF 205 (394)
T ss_dssp TTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCTTC-CEECTTTTT-TCCCSEEEECT--TCCEECTTTTTTCT
T ss_pred hhhhhcccccccccce--eeeecccceeccccccccccccee-eEecccccc-ccceeEEEECC--cccccccchhhhcc
Confidence 7889999999999754 233334567889999999887631 111222343 35788888864 34445556677888
Q ss_pred CccEEEeecCCCChhHHHh-------------ccCCCCCCEEEecCCCCChhhHHHHhcCCCCCEEECCCCCCChHHHHh
Q 016017 181 NLKSLQISCSKVTDSGIAY-------------LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 247 (396)
Q Consensus 181 ~L~~L~l~~~~~~~~~~~~-------------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 247 (396)
+++................ +.....+..+.+... +.......+..+..|+.+.+.... .......
T Consensus 206 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~-v~~i~~~aF~~c~~L~~i~lp~~~-~~I~~~a 283 (394)
T 4gt6_A 206 ALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNG-VARIETHAFDSCAYLASVKMPDSV-VSIGTGA 283 (394)
T ss_dssp TCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTT-EEEECTTTTTTCSSCCEEECCTTC-CEECTTT
T ss_pred ccceecccccccccccceeecccccccccccccccccccceEEcCCc-ceEcccceeeecccccEEeccccc-ceecCcc
Confidence 8887776544322111000 112233444444332 222223467788999999987543 2233456
Q ss_pred hhcCCCCcEEEccCCcCcHHHHHHhhCCCCCCEEeccCCCCChhHhHHHhCCCCccEEEcCCCCCCchhHHhhcCCCCCC
Q 016017 248 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 327 (396)
Q Consensus 248 l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 327 (396)
+..++.|+.+.+... +.......|.+|.+|+.+.+..+ +...+..+|.+|.+|+.+.+..+ ++..+...|.+|++|+
T Consensus 284 F~~c~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~ 360 (394)
T 4gt6_A 284 FMNCPALQDIEFSSR-ITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALN 360 (394)
T ss_dssp TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCC
T ss_pred cccccccccccCCCc-ccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCC
Confidence 778899999998643 33333456888999999999764 44445567888999999999754 6666677889999999
Q ss_pred EEeccCcccChhhhHhhhCCCCCCEeecCCCC
Q 016017 328 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 359 (396)
Q Consensus 328 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 359 (396)
.+++.++.. ....+..+.+|+.+.+..+.
T Consensus 361 ~i~~~~~~~---~~~~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 361 NIEYSGSRS---QWNAISTDSGLQNLPVAPGS 389 (394)
T ss_dssp EEEESSCHH---HHHTCBCCCCC---------
T ss_pred EEEECCcee---ehhhhhccCCCCEEEeCCCC
Confidence 999987632 22455678889888876543
No 151
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.09 E-value=4.4e-11 Score=93.80 Aligned_cols=104 Identities=16% Similarity=0.122 Sum_probs=71.0
Q ss_pred cEEEccCCcCcHHHHHHhhCCCCCCEEeccCCCCChhHhHHHhCCCCccEEEcCCCCCCchhHHhhcCCCCCCEEeccCc
Q 016017 255 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 334 (396)
Q Consensus 255 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 334 (396)
+.++++++.+... |..+ .++|+.|++++|.+....+..+..+++|+.|++++|+++......+..+++|++|++++|
T Consensus 15 ~~l~~~~n~l~~i-P~~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASV-PAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSSC-CSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCcc-CCCc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 5677777766543 2222 267777888877777665666777777777777777777655555667777777777777
Q ss_pred ccChhhhHhhhCCCCCCEeecCCCCCc
Q 016017 335 GISDGSLRKLAGLSSLKSLNLDARQIT 361 (396)
Q Consensus 335 ~~~~~~~~~l~~~~~L~~L~l~~~~l~ 361 (396)
.++......+..+++|+.|++++|++.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 777654445667777777777777665
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.02 E-value=2.9e-10 Score=101.31 Aligned_cols=301 Identities=14% Similarity=0.143 Sum_probs=161.8
Q ss_pred cCCCccEEEeecCCCChHHHHHhhCCCCCCeeeccCCcccChhHHHhhhCCCCCcEEeccCCccccHHHHHHHhCCCCCc
Q 016017 55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134 (396)
Q Consensus 55 ~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 134 (396)
...+++.+.+... ++.....+|.+|.+|+.+++.. .+......+|.++ +|+.+.+..+ +......++..+ +|+
T Consensus 44 ~~~~i~~v~ip~~-vt~Ig~~aF~~C~~L~~I~lp~--~v~~Ig~~aF~~c-~l~~i~~~~~--l~~I~~~aF~~~-~L~ 116 (379)
T 4h09_A 44 DRDRISEVRVNSG-ITSIGEANFNSCYNMTKVTVAS--TVTSIGDGAFADT-KLQSYTGMER--VKKFGDYVFQGT-DLD 116 (379)
T ss_dssp GGGGCSEEEECTT-EEEECTTTTTTCTTCCEEEECT--TCCEECTTTTTTC-CCCEEEECTT--CCEECTTTTTTC-CCS
T ss_pred cccCCEEEEeCCC-ccChHHHHhhCCCCCCEEEeCC--cceEechhhhcCC-CCceEECCce--eeEeccceeccC-Ccc
Confidence 3456777777542 4444456677778888888765 3444445556665 4666666433 222222334443 677
Q ss_pred EecccccccccCcccccCCCCcccEEecCCCCCccccccccccCCCCccEEEeecCCCChh------------HHHhccC
Q 016017 135 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS------------GIAYLKG 202 (396)
Q Consensus 135 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~------------~~~~~~~ 202 (396)
.+.+.... .......+..+ +++.+.+.. .++......+..+.+++...+........ ....+..
T Consensus 117 ~i~lp~~~-~~i~~~~F~~~-~l~~~~~~~--~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (379)
T 4h09_A 117 DFEFPGAT-TEIGNYIFYNS-SVKRIVIPK--SVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPA 192 (379)
T ss_dssp EEECCTTC-CEECTTTTTTC-CCCEEEECT--TCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCT
T ss_pred cccCCCcc-ccccccccccc-eeeeeeccc--eeeccccchhcccccccccccccccceeecccceecccccceeccccc
Confidence 77765421 11111123332 444444432 23333444555666666666554321110 0011223
Q ss_pred CCCCCEEEecCCCCChhhHHHHhcCCCCCEEECCCCCCChHHHHhhhcCCCCcEEEccCCcCcHHHHHHhhCCCCCCEEe
Q 016017 203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282 (396)
Q Consensus 203 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 282 (396)
+..+..+.+..... ......+..+.+++.+.+... +.......+..+..|+.+.+..+ +.......+.++.+|+.+.
T Consensus 193 ~~~~~~~~~~~~~~-~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~ 269 (379)
T 4h09_A 193 AKTGTEFTIPSTVK-TVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLN 269 (379)
T ss_dssp TCCCSEEECCTTCC-EECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEE
T ss_pred ccccccccccccee-EEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccc
Confidence 34444444433211 111233445667777776543 22223345566777777777654 2222234566777777777
Q ss_pred ccCCCCChhHhHHHhCCCCccEEEcCCCCCCchhHHhhcCCCCCCEEeccCcccChhhhHhhhCCCCCCEeecCCCCCcH
Q 016017 283 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362 (396)
Q Consensus 283 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~ 362 (396)
+... +...+...|..+.+|+.+.+.++.++..+...+.+|++|+.+.+..+ ++.....++.+|++|+.+.+..+ ++.
T Consensus 270 l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~ 346 (379)
T 4h09_A 270 FYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITL 346 (379)
T ss_dssp ECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCE
T ss_pred cccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCE
Confidence 7543 33334445667778888888777676666667777888888887653 55555666777788887777543 443
Q ss_pred HHHHHHhcCc
Q 016017 363 TGLAALTSLT 372 (396)
Q Consensus 363 ~~~~~l~~~~ 372 (396)
.+..+|.++.
T Consensus 347 I~~~aF~~c~ 356 (379)
T 4h09_A 347 IESGAFEGSS 356 (379)
T ss_dssp ECTTTTTTSS
T ss_pred EchhHhhCCC
Confidence 4345666554
No 153
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.02 E-value=4.4e-09 Score=83.20 Aligned_cols=118 Identities=17% Similarity=0.104 Sum_probs=77.2
Q ss_pred hhhcCCCCcEEEccCC-cCcHHH----HHHhhCCCCCCEEeccCCCCChhHhHH----HhCCCCccEEEcCCCCCCchhH
Q 016017 247 KFSKIGSLKVLNLGFN-EITDEC----LVHLKGLTNLESLNLDSCGIGDEGLVN----LTGLCNLKCLELSDTQVGSSGL 317 (396)
Q Consensus 247 ~l~~~~~L~~L~l~~~-~~~~~~----~~~l~~~~~L~~L~l~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~~~ 317 (396)
.+...++|++|++++| .+.+.. ...+...++|++|++++|.+.+.+... +...++|++|++++|.+++.+.
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 3444555666666655 554322 223445567777777777776655433 3345678888888888877664
Q ss_pred Hh----hcCCCCCCEEec--cCcccChhhhHhhh----CCCCCCEeecCCCCCcHHH
Q 016017 318 RH----LSGLTNLESINL--SFTGISDGSLRKLA----GLSSLKSLNLDARQITDTG 364 (396)
Q Consensus 318 ~~----l~~~~~L~~L~l--~~~~~~~~~~~~l~----~~~~L~~L~l~~~~l~~~~ 364 (396)
.. +...++|++|++ ++|.+++.....+. ..++|+.|++++|.+...+
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~~ 167 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPRL 167 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHHH
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChHH
Confidence 43 356678888888 77888876654443 4688999999998887654
No 154
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.01 E-value=2.8e-10 Score=88.91 Aligned_cols=106 Identities=23% Similarity=0.092 Sum_probs=78.1
Q ss_pred CCEEECCCCCCChHHHHhhhcCCCCcEEEccCCcCcHHHHHHhhCCCCCCEEeccCCCCChhHhHHHhCCCCccEEEcCC
Q 016017 230 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 309 (396)
Q Consensus 230 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 309 (396)
.+.++++++.+.... ..+ .++|+.|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++++
T Consensus 11 ~~~l~~s~n~l~~ip-~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLASVP-TGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSSCC-SCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCccC-ccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 467788777765432 111 36788888888887766566677888888888888888766666667788888888888
Q ss_pred CCCCchhHHhhcCCCCCCEEeccCcccCh
Q 016017 310 TQVGSSGLRHLSGLTNLESINLSFTGISD 338 (396)
Q Consensus 310 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 338 (396)
|.++......+..+++|++|++++|.+..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 88877666667778888888888886653
No 155
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.99 E-value=3.9e-10 Score=88.34 Aligned_cols=105 Identities=21% Similarity=0.126 Sum_probs=76.7
Q ss_pred CEEECCCCCCChHHHHhhhcCCCCcEEEccCCcCcHHHHHHhhCCCCCCEEeccCCCCChhHhHHHhCCCCccEEEcCCC
Q 016017 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 310 (396)
Q Consensus 231 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 310 (396)
+.++++++.+..... .+ .++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|++|++++|
T Consensus 15 ~~l~~~~n~l~~iP~-~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPA-GI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSSCCS-CC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCccCC-Cc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 567777776654322 12 367888888888877665666778888888888888877655555677888888888888
Q ss_pred CCCchhHHhhcCCCCCCEEeccCcccCh
Q 016017 311 QVGSSGLRHLSGLTNLESINLSFTGISD 338 (396)
Q Consensus 311 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 338 (396)
.++......+..+++|++|++++|.+..
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred ccceeCHHHhccccCCCEEEeCCCCccc
Confidence 8876655557778888888888887653
No 156
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.99 E-value=5.5e-10 Score=99.52 Aligned_cols=292 Identities=17% Similarity=0.136 Sum_probs=190.5
Q ss_pred HHhhCCCCCCeeeccCCcccChhHHHhhhCCCCCcEEeccCCccccHHHHHHHhCCCCCcEecccccccccCcccccCCC
Q 016017 75 IHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGL 154 (396)
Q Consensus 75 ~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~ 154 (396)
.++....+|+++.+.. .++..+..+|.+|.+|+.+.+..+ +...+..+|.++ +|+.+.+..+ ........+..
T Consensus 40 ~~~~~~~~i~~v~ip~--~vt~Ig~~aF~~C~~L~~I~lp~~--v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~- 112 (379)
T 4h09_A 40 PWYKDRDRISEVRVNS--GITSIGEANFNSCYNMTKVTVAST--VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG- 112 (379)
T ss_dssp TTGGGGGGCSEEEECT--TEEEECTTTTTTCTTCCEEEECTT--CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-
T ss_pred cccccccCCEEEEeCC--CccChHHHHhhCCCCCCEEEeCCc--ceEechhhhcCC-CCceEECCce-eeEeccceecc-
Confidence 3455667899999976 566666778899999999999754 344445567777 5777766542 11111223444
Q ss_pred CcccEEecCCCCCccccccccccCCCCccEEEeecCCCChhHHHhccCCCCCCEEEecCCCCChhh------------HH
Q 016017 155 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC------------LD 222 (396)
Q Consensus 155 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~------------~~ 222 (396)
.+|+.+.+.. .+.......+..+ +++.+.+..+ ++......+..+.+++.+.+......... ..
T Consensus 113 ~~L~~i~lp~--~~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (379)
T 4h09_A 113 TDLDDFEFPG--ATTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILE 188 (379)
T ss_dssp CCCSEEECCT--TCCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEE
T ss_pred CCcccccCCC--ccccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceec
Confidence 3788888865 2333334445444 5666665443 33333445667788888877654221100 01
Q ss_pred HHhcCCCCCEEECCCCCCChHHHHhhhcCCCCcEEEccCCcCcHHHHHHhhCCCCCCEEeccCCCCChhHhHHHhCCCCc
Q 016017 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302 (396)
Q Consensus 223 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 302 (396)
.+..+..+..+.+.... .......+..+.+++.+.+... +.......+.++..|+.+.+..+ +...+..++..+.+|
T Consensus 189 ~~~~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l 265 (379)
T 4h09_A 189 SYPAAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTAL 265 (379)
T ss_dssp ECCTTCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTC
T ss_pred cccccccccccccccce-eEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehh
Confidence 12233455555554322 1112234556778888888654 22222345678899999999765 444455667788999
Q ss_pred cEEEcCCCCCCchhHHhhcCCCCCCEEeccCcccChhhhHhhhCCCCCCEeecCCCCCcHHHHHHHhcCccCCeeecCCC
Q 016017 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 382 (396)
Q Consensus 303 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~ 382 (396)
+.+.+..+ +...+...+..|++|+.+.+.++.++......+.+|.+|+.+.+..+ ++..+..+|.+|.+|+.+.+..+
T Consensus 266 ~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 266 KTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp CEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred cccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 99999754 55556677889999999999988888877888899999999999754 55555678999999999998654
No 157
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.79 E-value=3.9e-09 Score=92.84 Aligned_cols=103 Identities=23% Similarity=0.296 Sum_probs=71.9
Q ss_pred EEEccCC-cCcHHHHHHhhCCCCCCEEeccC-CCCChhHhHHHhCCCCccEEEcCCCCCCchhHHhhcCCCCCCEEeccC
Q 016017 256 VLNLGFN-EITDECLVHLKGLTNLESLNLDS-CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333 (396)
Q Consensus 256 ~L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 333 (396)
.++++++ .+... |. +..+++|+.|++++ |.+....+..|..+++|+.|+|++|.++...+..+..+++|++|+|++
T Consensus 12 ~v~~~~~n~l~~i-p~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDSL-HH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTTT-TT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCcc-CC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4566665 56543 44 67777788888875 777766666677778888888888887776666777778888888888
Q ss_pred cccChhhhHhhhCCCCCCEeecCCCCCc
Q 016017 334 TGISDGSLRKLAGLSSLKSLNLDARQIT 361 (396)
Q Consensus 334 ~~~~~~~~~~l~~~~~L~~L~l~~~~l~ 361 (396)
|.++...+..+..++ |+.|++.+|.+.
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 877764444444344 888888777765
No 158
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.65 E-value=2.9e-08 Score=87.20 Aligned_cols=104 Identities=21% Similarity=0.176 Sum_probs=83.9
Q ss_pred EEECCCC-CCChHHHHhhhcCCCCcEEEccC-CcCcHHHHHHhhCCCCCCEEeccCCCCChhHhHHHhCCCCccEEEcCC
Q 016017 232 YLNLNRC-QLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 309 (396)
Q Consensus 232 ~L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 309 (396)
.++.+++ .+... +. +..+++|+.|++++ |.+....+..|..+++|+.|++++|.+....+..|..+++|+.|+|++
T Consensus 12 ~v~~~~~n~l~~i-p~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDSL-HH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTTT-TT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCcc-CC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4577766 66553 34 78888999999996 888776667788999999999999999887777888999999999999
Q ss_pred CCCCchhHHhhcCCCCCCEEeccCcccCh
Q 016017 310 TQVGSSGLRHLSGLTNLESINLSFTGISD 338 (396)
Q Consensus 310 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 338 (396)
|.++......+..++ |+.|++.+|.+..
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 998876555555555 9999999997763
No 159
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.39 E-value=2.8e-06 Score=66.62 Aligned_cols=118 Identities=15% Similarity=0.163 Sum_probs=91.5
Q ss_pred HHHhhCCCCCCEEeccCC-CCChhHhHH----HhCCCCccEEEcCCCCCCchhHHhh----cCCCCCCEEeccCcccChh
Q 016017 269 LVHLKGLTNLESLNLDSC-GIGDEGLVN----LTGLCNLKCLELSDTQVGSSGLRHL----SGLTNLESINLSFTGISDG 339 (396)
Q Consensus 269 ~~~l~~~~~L~~L~l~~~-~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~~~~~l----~~~~~L~~L~l~~~~~~~~ 339 (396)
...+..-+.|++|++.++ .+.+++... +..-..|+.|+|++|.+++.+...+ ...+.|++|+|+.|.+++.
T Consensus 34 ~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~ 113 (197)
T 1pgv_A 34 NRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPE 113 (197)
T ss_dssp HHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHH
T ss_pred HHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHH
Confidence 344566789999999986 888766544 4456799999999999998876555 4678999999999999998
Q ss_pred hhHhhh----CCCCCCEeecCCC---CCcHHHH----HHHhcCccCCeeecCCCccCh
Q 016017 340 SLRKLA----GLSSLKSLNLDAR---QITDTGL----AALTSLTGLTHLDLFGARITD 386 (396)
Q Consensus 340 ~~~~l~----~~~~L~~L~l~~~---~l~~~~~----~~l~~~~~L~~l~l~~~~l~~ 386 (396)
+...+. .-+.|+.|+|+++ .+.+.+. ..+..-++|++|++..|.+..
T Consensus 114 Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g~ 171 (197)
T 1pgv_A 114 LLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASMEA 171 (197)
T ss_dssp HHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHHH
T ss_pred HHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCccH
Confidence 877665 3467999999865 5676543 455667899999998876543
No 160
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.38 E-value=5.4e-06 Score=65.02 Aligned_cols=118 Identities=13% Similarity=0.094 Sum_probs=89.3
Q ss_pred HHhhhcCCCCcEEEccCC-cCcHHH----HHHhhCCCCCCEEeccCCCCChhHhHHH----hCCCCccEEEcCCCCCCch
Q 016017 245 CEKFSKIGSLKVLNLGFN-EITDEC----LVHLKGLTNLESLNLDSCGIGDEGLVNL----TGLCNLKCLELSDTQVGSS 315 (396)
Q Consensus 245 ~~~l~~~~~L~~L~l~~~-~~~~~~----~~~l~~~~~L~~L~l~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~ 315 (396)
...+..-+.|++|+++++ .+.+.. ...+..-..|+.|++.+|.+.+.+...+ ..-.+|++|+|++|.|++.
T Consensus 34 ~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~ 113 (197)
T 1pgv_A 34 NRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPE 113 (197)
T ss_dssp HHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHH
T ss_pred HHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHH
Confidence 344566789999999985 776532 3445666899999999999998765544 3567999999999999998
Q ss_pred hHHhh----cCCCCCCEEeccCc---ccChhhhH----hhhCCCCCCEeecCCCCCcH
Q 016017 316 GLRHL----SGLTNLESINLSFT---GISDGSLR----KLAGLSSLKSLNLDARQITD 362 (396)
Q Consensus 316 ~~~~l----~~~~~L~~L~l~~~---~~~~~~~~----~l~~~~~L~~L~l~~~~l~~ 362 (396)
+...+ ...+.|++|+++++ .+++.... .+..-+.|+.|+++.+.+..
T Consensus 114 Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g~ 171 (197)
T 1pgv_A 114 LLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASMEA 171 (197)
T ss_dssp HHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHHH
T ss_pred HHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCccH
Confidence 87655 45678999999865 56765443 34456899999999877654
No 161
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.15 E-value=1.7e-06 Score=71.77 Aligned_cols=79 Identities=28% Similarity=0.306 Sum_probs=34.7
Q ss_pred CCCccEEEcCCCCCCchh--HHhhcCCCCCCEEeccCcccChh-hhHhhhCCCCCCEeecCCCCCcH-------HHHHHH
Q 016017 299 LCNLKCLELSDTQVGSSG--LRHLSGLTNLESINLSFTGISDG-SLRKLAGLSSLKSLNLDARQITD-------TGLAAL 368 (396)
Q Consensus 299 ~~~L~~L~l~~~~~~~~~--~~~l~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~l~~-------~~~~~l 368 (396)
+++|+.|++++|.+++.. ...+..+++|+.|+|++|.+.+. ....+..+ +|+.|++.+|.+.+ .....+
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~il 247 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISAIR 247 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHHHH
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHHHH
Confidence 344444444444443311 12223445555555555554442 11112222 55666666655542 112344
Q ss_pred hcCccCCeee
Q 016017 369 TSLTGLTHLD 378 (396)
Q Consensus 369 ~~~~~L~~l~ 378 (396)
..+|+|+.||
T Consensus 248 ~~~P~L~~LD 257 (267)
T 3rw6_A 248 ERFPKLLRLD 257 (267)
T ss_dssp HHCTTCCEES
T ss_pred HHCcccCeEC
Confidence 5566666654
No 162
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.93 E-value=3.1e-05 Score=64.24 Aligned_cols=88 Identities=20% Similarity=0.254 Sum_probs=58.8
Q ss_pred HHHHhcCCCccEEEeecCCCCh--HHHHHhhCCCCCCeeeccCCcccChh-HHHhhhCCCCCcEEeccCCcccc------
Q 016017 50 DVIASQGSSLLSVDLSGSDVTD--SGLIHLKDCSNLQSLDFNFCIQISDG-GLEHLRGLSNLTSLSFRRNNAIT------ 120 (396)
Q Consensus 50 ~~~~~~~~~l~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~------ 120 (396)
..+...+++|+.|+|++|.+++ .....+..+++|+.|+|+++ .+.+. ....+..+ +|++|++++|....
T Consensus 163 ~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~ 240 (267)
T 3rw6_A 163 RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQS 240 (267)
T ss_dssp HHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHH
T ss_pred HHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCchhhhhcccC-CcceEEccCCcCccccCcch
Confidence 3444678899999999998876 33455678889999999886 45443 23334444 88899998887532
Q ss_pred HHHHHHHhCCCCCcEeccc
Q 016017 121 AQGMKAFAGLINLVKLDLE 139 (396)
Q Consensus 121 ~~~~~~~~~~~~L~~L~l~ 139 (396)
......+..+|+|+.|+-.
T Consensus 241 ~y~~~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 241 TYISAIRERFPKLLRLDGH 259 (267)
T ss_dssp HHHHHHHHHCTTCCEESSC
T ss_pred hHHHHHHHHCcccCeECCc
Confidence 1122345677888877643
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.96 E-value=0.0093 Score=43.41 Aligned_cols=55 Identities=13% Similarity=0.108 Sum_probs=39.4
Q ss_pred EEEcCCCCCC--chhHHhhcCCCCCCEEeccCcccChhhhHhhhCCCCCCEeecCCCCCc
Q 016017 304 CLELSDTQVG--SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 361 (396)
Q Consensus 304 ~L~l~~~~~~--~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~ 361 (396)
.++.++.+++ .. +..+ .++|++|+|++|.++......+..+++|+.|+|.+|.+.
T Consensus 12 ~v~Cs~~~L~~~~v-P~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASL-PTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTS-CSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccC-CCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5666666665 22 1112 257899999999888876667778889999999988765
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.00 E-value=0.087 Score=38.18 Aligned_cols=56 Identities=13% Similarity=0.079 Sum_probs=40.5
Q ss_pred EEeccCCCCC-hhHhHHHhCCCCccEEEcCCCCCCchhHHhhcCCCCCCEEeccCcccC
Q 016017 280 SLNLDSCGIG-DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 337 (396)
Q Consensus 280 ~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 337 (396)
.++-++..++ ...+..+ .++|+.|+|++|.++......+..+++|+.|+|.+|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4555555554 1222222 237999999999998877778888999999999998664
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=75.96 E-value=0.77 Score=31.29 Aligned_cols=45 Identities=11% Similarity=0.014 Sum_probs=23.0
Q ss_pred CChHHHHHhhCCCCCCeeeccCCcccChhHHHhhhCCCCCcEEeccC
Q 016017 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115 (396)
Q Consensus 69 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 115 (396)
++......|.+|.+|+.+.|.. .+...+..+|.+|.+|+.+.+.+
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~--~v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQP--NIGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECT--TSSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCC--chheEcHHHHhccCCccEEEEcC
Confidence 3333334455566666666654 33444444555555555555544
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=71.57 E-value=1.7 Score=29.51 Aligned_cols=40 Identities=20% Similarity=0.161 Sum_probs=23.2
Q ss_pred hHHHhCCCCccEEEcCCCCCCchhHHhhcCCCCCCEEeccC
Q 016017 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333 (396)
Q Consensus 293 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 333 (396)
..+|.+|.+|+.+.|..+ ++..+...|.+|.+|+.+.+..
T Consensus 13 ~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 13 KSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp SCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred HHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 344556666666666553 3444445566666666666654
Done!