BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 016018
         (396 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3UTT|E Chain E, 1e6-A0201-Alwgpdpaaa Complex, Triclinic
 pdb|3UTT|J Chain J, 1e6-A0201-Alwgpdpaaa Complex, Triclinic
          Length = 245

 Score = 28.5 bits (62), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 11/25 (44%), Positives = 15/25 (60%)

Query: 183 VYTLSADCWRELVANIDFLGAGTRF 207
           VY  ++  W +L  NI + GAGTR 
Sbjct: 88  VYFCASSLWEKLAKNIQYFGAGTRL 112


>pdb|3UTP|E Chain E, 1e6 Tcr Specific For Hla-A0201-Alwgpdpaaa
 pdb|3UTP|L Chain L, 1e6 Tcr Specific For Hla-A0201-Alwgpdpaaa
 pdb|3UTS|E Chain E, 1e6-A0201-Alwgpdpaaa Complex, Monoclinic
 pdb|3UTS|J Chain J, 1e6-A0201-Alwgpdpaaa Complex, Monoclinic
          Length = 246

 Score = 28.5 bits (62), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 11/25 (44%), Positives = 15/25 (60%)

Query: 183 VYTLSADCWRELVANIDFLGAGTRF 207
           VY  ++  W +L  NI + GAGTR 
Sbjct: 89  VYFCASSLWEKLAKNIQYFGAGTRL 113


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.327    0.143    0.461 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,369,792
Number of Sequences: 62578
Number of extensions: 517425
Number of successful extensions: 1178
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1176
Number of HSP's gapped (non-prelim): 3
length of query: 396
length of database: 14,973,337
effective HSP length: 101
effective length of query: 295
effective length of database: 8,652,959
effective search space: 2552622905
effective search space used: 2552622905
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (24.6 bits)