Query 016018
Match_columns 396
No_of_seqs 173 out of 1635
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 03:02:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016018.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016018hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01640 F_box_assoc_1 F-box 100.0 4.3E-37 9.3E-42 276.4 25.5 221 107-348 1-230 (230)
2 PF07734 FBA_1: F-box associat 99.8 6E-17 1.3E-21 137.4 16.8 93 214-316 1-96 (164)
3 PF08268 FBA_3: F-box associat 99.7 4.8E-16 1E-20 126.4 13.6 111 214-334 1-118 (129)
4 PLN03215 ascorbic acid mannose 99.5 6.1E-12 1.3E-16 117.7 25.9 307 1-354 1-354 (373)
5 PF12937 F-box-like: F-box-lik 99.0 3.7E-10 8E-15 74.2 2.6 43 4-46 1-43 (47)
6 PF00646 F-box: F-box domain; 98.9 6.4E-10 1.4E-14 73.5 0.8 46 3-48 2-47 (48)
7 PHA02713 hypothetical protein; 98.8 7.1E-07 1.5E-11 90.3 21.5 221 107-355 299-542 (557)
8 smart00256 FBOX A Receptor for 98.7 4.1E-09 8.8E-14 67.0 1.6 39 7-45 1-39 (41)
9 PHA03098 kelch-like protein; P 98.7 3.8E-06 8.1E-11 85.1 22.2 200 122-355 312-520 (534)
10 PLN02193 nitrile-specifier pro 98.5 2E-05 4.3E-10 78.4 22.2 208 122-355 194-419 (470)
11 KOG4441 Proteins containing BT 98.5 1.1E-05 2.4E-10 81.6 20.5 214 106-355 327-555 (571)
12 PHA02713 hypothetical protein; 98.5 1.1E-05 2.4E-10 81.7 19.8 199 122-354 273-497 (557)
13 PHA02790 Kelch-like protein; P 98.5 1.7E-05 3.6E-10 79.1 20.6 184 122-353 288-477 (480)
14 PLN02153 epithiospecifier prot 98.5 7.7E-05 1.7E-09 71.1 23.3 218 122-355 51-293 (341)
15 TIGR03547 muta_rot_YjhT mutatr 98.4 6.6E-05 1.4E-09 71.7 22.6 226 109-354 15-306 (346)
16 KOG4441 Proteins containing BT 98.4 2.4E-05 5.2E-10 79.2 18.4 198 122-354 302-507 (571)
17 TIGR03548 mutarot_permut cycli 98.3 0.00011 2.4E-09 69.4 20.3 199 122-354 40-287 (323)
18 PRK14131 N-acetylneuraminic ac 98.3 0.00012 2.7E-09 70.6 20.8 226 107-354 34-328 (376)
19 PLN02153 epithiospecifier prot 98.1 0.00035 7.7E-09 66.5 20.0 179 163-355 34-234 (341)
20 PLN02193 nitrile-specifier pro 98.1 0.00092 2E-08 66.5 21.6 209 122-355 138-360 (470)
21 PHA03098 kelch-like protein; P 98.0 0.00043 9.2E-09 70.2 18.5 179 107-315 338-523 (534)
22 PHA02790 Kelch-like protein; P 97.7 0.0014 2.9E-08 65.5 16.5 143 179-354 287-431 (480)
23 PRK14131 N-acetylneuraminic ac 97.7 0.011 2.3E-07 57.2 21.5 160 179-351 189-373 (376)
24 TIGR03548 mutarot_permut cycli 97.5 0.012 2.7E-07 55.4 19.3 140 121-286 88-233 (323)
25 KOG2120 SCF ubiquitin ligase, 97.4 7.3E-05 1.6E-09 67.3 1.4 41 4-44 98-138 (419)
26 KOG4693 Uncharacterized conser 97.3 0.0034 7.4E-08 55.6 11.4 214 122-357 45-287 (392)
27 TIGR03547 muta_rot_YjhT mutatr 96.8 0.048 1E-06 52.0 15.1 149 121-287 168-332 (346)
28 KOG0379 Kelch repeat-containin 96.5 0.34 7.3E-06 48.4 19.2 164 180-357 89-260 (482)
29 KOG4693 Uncharacterized conser 96.4 0.1 2.3E-06 46.4 13.0 144 179-334 157-308 (392)
30 KOG1230 Protein containing rep 96.2 0.18 3.9E-06 47.7 13.9 218 121-358 98-352 (521)
31 KOG2997 F-box protein FBX9 [Ge 96.2 0.0023 5E-08 58.1 1.5 44 4-47 107-155 (366)
32 KOG0281 Beta-TrCP (transducin 96.0 0.0037 8.1E-08 57.2 1.9 46 4-49 75-124 (499)
33 KOG0379 Kelch repeat-containin 95.9 0.43 9.3E-06 47.7 16.1 182 111-314 123-312 (482)
34 PF07762 DUF1618: Protein of u 94.3 0.36 7.7E-06 38.9 8.7 76 241-316 6-99 (131)
35 KOG1230 Protein containing rep 93.1 1.7 3.7E-05 41.4 11.7 168 179-357 98-289 (521)
36 TIGR01640 F_box_assoc_1 F-box 92.2 5 0.00011 35.6 13.5 123 216-357 3-138 (230)
37 PF13964 Kelch_6: Kelch motif 91.2 0.54 1.2E-05 30.6 4.6 39 213-257 6-44 (50)
38 PF02191 OLF: Olfactomedin-lik 90.7 7.6 0.00016 35.1 12.9 127 212-356 72-213 (250)
39 smart00284 OLF Olfactomedin-li 88.1 14 0.00031 33.3 12.6 126 213-356 78-218 (255)
40 PF01344 Kelch_1: Kelch motif; 87.8 1.7 3.8E-05 27.5 5.0 38 213-256 6-43 (47)
41 PF07893 DUF1668: Protein of u 87.3 16 0.00035 34.7 13.2 135 105-260 70-221 (342)
42 PF13964 Kelch_6: Kelch motif 86.4 1.1 2.5E-05 29.0 3.6 22 121-142 28-49 (50)
43 KOG4341 F-box protein containi 86.1 0.33 7.2E-06 46.3 1.1 38 5-42 73-110 (483)
44 KOG4152 Host cell transcriptio 84.9 34 0.00074 33.9 13.8 94 122-225 58-153 (830)
45 PF08450 SGL: SMP-30/Gluconola 84.9 28 0.00061 31.0 18.4 204 110-357 10-224 (246)
46 KOG0274 Cdc4 and related F-box 83.8 0.36 7.9E-06 48.7 0.3 44 4-47 108-151 (537)
47 PF02897 Peptidase_S9_N: Proly 82.1 52 0.0011 32.0 18.6 119 215-354 284-412 (414)
48 PF13360 PQQ_2: PQQ-like domai 81.7 35 0.00077 29.8 16.8 194 110-353 35-237 (238)
49 PF07646 Kelch_2: Kelch motif; 80.8 5.7 0.00012 25.5 5.1 42 213-258 6-47 (49)
50 KOG2055 WD40 repeat protein [G 80.7 50 0.0011 32.2 13.0 102 240-353 279-381 (514)
51 PRK11138 outer membrane biogen 78.0 53 0.0012 31.7 13.2 115 213-353 64-185 (394)
52 smart00612 Kelch Kelch domain. 77.7 4.5 9.7E-05 25.2 3.9 19 178-196 14-32 (47)
53 PF10282 Lactonase: Lactonase, 77.4 66 0.0014 30.5 17.4 108 241-354 214-332 (345)
54 PF01344 Kelch_1: Kelch motif; 76.0 6 0.00013 24.9 4.1 34 162-196 12-45 (47)
55 smart00564 PQQ beta-propeller 73.9 11 0.00024 21.6 4.6 26 327-352 5-30 (33)
56 COG4257 Vgb Streptogramin lyas 71.5 54 0.0012 30.0 10.0 124 104-261 192-317 (353)
57 PF13418 Kelch_4: Galactose ox 70.3 9.1 0.0002 24.4 3.9 37 214-256 7-44 (49)
58 PF10282 Lactonase: Lactonase, 69.9 1E+02 0.0022 29.2 13.0 106 240-354 165-285 (345)
59 PRK11138 outer membrane biogen 68.5 1E+02 0.0023 29.7 12.6 107 213-352 251-359 (394)
60 PF13360 PQQ_2: PQQ-like domai 68.5 80 0.0017 27.5 14.7 113 214-353 32-147 (238)
61 PF01011 PQQ: PQQ enzyme repea 67.6 12 0.00027 22.5 3.9 27 330-356 2-28 (38)
62 PF07646 Kelch_2: Kelch motif; 65.0 12 0.00027 23.9 3.7 40 271-312 6-47 (49)
63 PF03088 Str_synth: Strictosid 64.4 15 0.00032 27.4 4.4 17 337-353 36-52 (89)
64 PF06433 Me-amine-dh_H: Methyl 64.2 1.3E+02 0.0028 28.5 11.5 114 218-352 195-326 (342)
65 cd01207 Ena-Vasp Enabled-VASP- 63.2 20 0.00043 27.9 5.1 42 122-168 10-51 (111)
66 KOG0310 Conserved WD40 repeat- 62.4 1.6E+02 0.0036 28.9 14.5 173 127-349 8-187 (487)
67 TIGR02658 TTQ_MADH_Hv methylam 61.8 1.5E+02 0.0033 28.3 13.5 118 216-353 203-338 (352)
68 cd01206 Homer Homer type EVH1 61.6 15 0.00033 28.2 4.1 39 122-168 12-51 (111)
69 PF08450 SGL: SMP-30/Gluconola 61.1 1.2E+02 0.0026 26.9 14.7 110 214-353 5-129 (246)
70 TIGR03075 PQQ_enz_alc_DH PQQ-d 61.0 1.5E+02 0.0033 30.1 12.5 118 213-353 64-196 (527)
71 PF13415 Kelch_3: Galactose ox 55.7 9.5 0.00021 24.5 1.9 22 121-142 19-40 (49)
72 PF13013 F-box-like_2: F-box-l 53.5 7.2 0.00016 30.3 1.2 29 4-32 22-50 (109)
73 TIGR03300 assembly_YfgL outer 52.5 2.1E+02 0.0046 27.2 12.7 109 213-352 60-169 (377)
74 KOG2502 Tub family proteins [G 52.4 9.9 0.00021 35.6 2.1 39 2-40 43-89 (355)
75 PF00930 DPPIV_N: Dipeptidyl p 51.6 2.2E+02 0.0047 27.0 12.2 113 239-353 156-275 (353)
76 TIGR03074 PQQ_membr_DH membran 51.3 2.7E+02 0.0058 29.8 12.6 30 213-255 189-220 (764)
77 PLN02772 guanylate kinase 48.8 1.1E+02 0.0025 29.6 8.6 75 213-300 29-107 (398)
78 KOG1274 WD40 repeat protein [G 47.9 3.9E+02 0.0084 28.8 15.9 58 293-350 162-222 (933)
79 COG1520 FOG: WD40-like repeat 47.1 2.6E+02 0.0057 26.6 11.9 113 214-353 64-178 (370)
80 COG3055 Uncharacterized protei 46.3 2.7E+02 0.0059 26.6 13.4 140 179-336 196-357 (381)
81 PF07893 DUF1668: Protein of u 46.2 2.7E+02 0.0058 26.5 13.7 107 242-354 87-215 (342)
82 KOG3926 F-box proteins [Amino 45.1 16 0.00035 33.0 2.2 40 3-42 201-241 (332)
83 COG2706 3-carboxymuconate cycl 42.7 3E+02 0.0065 26.1 14.1 120 218-357 155-287 (346)
84 PF13570 PQQ_3: PQQ-like domai 42.4 40 0.00086 20.4 3.1 21 327-347 20-40 (40)
85 TIGR03300 assembly_YfgL outer 40.6 3.3E+02 0.0071 25.9 11.8 25 328-352 190-214 (377)
86 COG3055 Uncharacterized protei 40.0 1.4E+02 0.0029 28.5 7.4 126 179-315 113-267 (381)
87 COG3386 Gluconolactonase [Carb 37.2 3.5E+02 0.0076 25.3 11.8 106 219-351 37-156 (307)
88 KOG2055 WD40 repeat protein [G 33.9 2.3E+02 0.005 27.9 8.0 61 293-357 237-299 (514)
89 KOG3545 Olfactomedin and relat 33.3 3.6E+02 0.0079 24.3 10.7 126 213-356 72-212 (249)
90 PF08268 FBA_3: F-box associat 30.9 1.6E+02 0.0034 23.2 5.8 31 326-356 3-38 (129)
91 PF15408 PH_7: Pleckstrin homo 30.2 21 0.00046 26.0 0.5 23 22-44 77-99 (104)
92 KOG0291 WD40-repeat-containing 28.6 7.3E+02 0.016 26.3 11.4 125 213-348 250-382 (893)
93 PF06058 DCP1: Dcp1-like decap 28.1 82 0.0018 25.0 3.5 29 330-358 21-49 (122)
94 PLN00181 protein SPA1-RELATED; 26.2 8.3E+02 0.018 26.1 22.1 101 241-349 640-741 (793)
95 KOG0649 WD40 repeat protein [G 24.9 1.6E+02 0.0035 26.5 5.0 28 327-354 125-152 (325)
96 KOG0301 Phospholipase A2-activ 24.6 8.3E+02 0.018 25.6 11.8 88 241-346 200-288 (745)
97 KOG1963 WD40 repeat protein [G 24.3 2.7E+02 0.0058 29.5 7.2 55 293-348 481-540 (792)
98 KOG4378 Nuclear protein COP1 [ 23.6 1.7E+02 0.0038 29.0 5.4 54 293-351 189-244 (673)
99 KOG1036 Mitotic spindle checkp 23.0 6.2E+02 0.014 23.6 10.2 106 241-365 75-181 (323)
100 KOG0283 WD40 repeat-containing 22.7 5.4E+02 0.012 27.1 9.0 99 109-228 378-482 (712)
101 TIGR03866 PQQ_ABC_repeats PQQ- 21.7 5.6E+02 0.012 22.6 14.5 105 241-356 179-290 (300)
102 KOG0279 G protein beta subunit 21.6 3.4E+02 0.0074 25.0 6.5 100 242-357 173-274 (315)
103 PF14339 DUF4394: Domain of un 20.7 2.2E+02 0.0047 25.5 5.1 55 109-166 36-92 (236)
104 KOG0292 Vesicle coat complex C 20.1 3.1E+02 0.0068 29.6 6.7 71 274-350 213-284 (1202)
105 PLN02772 guanylate kinase 20.1 4.3E+02 0.0093 25.7 7.3 63 271-335 29-93 (398)
No 1
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=100.00 E-value=4.3e-37 Score=276.40 Aligned_cols=221 Identities=24% Similarity=0.392 Sum_probs=165.8
Q ss_pred EeeeCceEEEeEcCCcEEEEcchhhhhccccccccCCCCcceeEEEEEEecCCCCeEEEEEEEEeCCCCcccceEEEEEc
Q 016018 107 VGHCHGIVCFALLSGRVVLANPAIREFRHLREHCYHSFSYWMGCVGFGYDVKSNDYKVVRILCISDGSGLCHLKVEVYTL 186 (396)
Q Consensus 107 ~~sc~GLlc~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~yKVv~~~~~~~~~~~~~~~~evys~ 186 (396)
++|||||||+... ..++||||+||+++.||+++.+........++||||+.+++||||++...... .....++||++
T Consensus 1 ~~sCnGLlc~~~~-~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~--~~~~~~~Vys~ 77 (230)
T TIGR01640 1 VVPCDGLICFSYG-KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGN--RNQSEHQVYTL 77 (230)
T ss_pred CcccceEEEEecC-CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCC--CCCccEEEEEe
Confidence 4799999999876 58999999999999999765421111222689999999999999999754221 13478999999
Q ss_pred CCCccccccccccccccccccccCCcceEEEcceEEEEEeccCCcccccCCCCccEEEEEeCCCceee-eecCCCCcccc
Q 016018 187 SADCWRELVANIDFLGAGTRFLKDNFECQYFRGACYWILWDKSVGINYNNLVNGDFIFSFDMSDEVFQ-KLPVPNILNEI 265 (396)
Q Consensus 187 ~t~~Wr~~~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~~~~~~il~fD~~~e~~~-~i~lP~~~~~~ 265 (396)
++++||.++..+ ....... .+|++||++||++.... ......|++||+++|+|+ .+++|.... .
T Consensus 78 ~~~~Wr~~~~~~------~~~~~~~-~~v~~~G~lyw~~~~~~-------~~~~~~IvsFDl~~E~f~~~i~~P~~~~-~ 142 (230)
T TIGR01640 78 GSNSWRTIECSP------PHHPLKS-RGVCINGVLYYLAYTLK-------TNPDYFIVSFDVSSERFKEFIPLPCGNS-D 142 (230)
T ss_pred CCCCccccccCC------CCccccC-CeEEECCEEEEEEEECC-------CCCcEEEEEEEcccceEeeeeecCcccc-c
Confidence 999999988411 1112233 39999999999987641 111238999999999999 589997421 1
Q ss_pred ccccceEEEecCeeEEEEeecCCCccEEEEEEEccCCCCCCeEEEEEecCC--CCc---ceeEEEEeCCcEEEEecC--C
Q 016018 266 DQEFSKLTVLNESLAFVLRDKYRKSYEIQIWVMDEFGANEIWKKLFTTEPF--CEI---KRPLSFCERGELIMEDYY--R 338 (396)
Q Consensus 266 ~~~~~~l~~~~g~L~~~~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~i~~~--~~~---~~p~~~~~~g~il~~~~~--~ 338 (396)
......|++++|+||++......++ ++||+|++++. ++|+|+++|+.. ..+ ..|+++..+|+|++.... +
T Consensus 143 ~~~~~~L~~~~G~L~~v~~~~~~~~--~~IWvl~d~~~-~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~~~ 219 (230)
T TIGR01640 143 SVDYLSLINYKGKLAVLKQKKDTNN--FDLWVLNDAGK-QEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDENP 219 (230)
T ss_pred cccceEEEEECCEEEEEEecCCCCc--EEEEEECCCCC-CceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCCCc
Confidence 1224679999999999998765455 99999999874 569999999842 122 347888889999998653 3
Q ss_pred e-EEEEECCCC
Q 016018 339 E-ACSYNLGTK 348 (396)
Q Consensus 339 ~-l~~yd~~t~ 348 (396)
. ++.||++++
T Consensus 220 ~~~~~y~~~~~ 230 (230)
T TIGR01640 220 FYIFYYNVGEN 230 (230)
T ss_pred eEEEEEeccCC
Confidence 4 999999875
No 2
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=99.75 E-value=6e-17 Score=137.38 Aligned_cols=93 Identities=34% Similarity=0.633 Sum_probs=70.9
Q ss_pred eEEEcceEEEEEeccCCcccccCCCCccEEEEEeCCCcee-eeecCCCCccccccccceEE-EecCeeEEEEeecCCCcc
Q 016018 214 CQYFRGACYWILWDKSVGINYNNLVNGDFIFSFDMSDEVF-QKLPVPNILNEIDQEFSKLT-VLNESLAFVLRDKYRKSY 291 (396)
Q Consensus 214 ~v~~~G~lywl~~~~~~~~~~~~~~~~~~il~fD~~~e~~-~~i~lP~~~~~~~~~~~~l~-~~~g~L~~~~~~~~~~~~ 291 (396)
+|++||++||++.... ......|++||+++|+| +.+++|.... .......|. +.+|+||++........
T Consensus 1 gV~vnG~~hW~~~~~~-------~~~~~~IlsFDl~~E~F~~~~~lP~~~~-~~~~~~~L~~v~~~~L~~~~~~~~~~~- 71 (164)
T PF07734_consen 1 GVFVNGALHWLAYDEN-------NDEKDFILSFDLSTEKFGRSLPLPFCND-DDDDSVSLSVVRGDCLCVLYQCDETSK- 71 (164)
T ss_pred CEEECCEEEeeEEecC-------CCCceEEEEEeccccccCCEECCCCccC-ccCCEEEEEEecCCEEEEEEeccCCcc-
Confidence 6999999999998761 11122799999999999 8899998532 233445674 45789999987554445
Q ss_pred EEEEEEEccCCC-CCCeEEEEEecCC
Q 016018 292 EIQIWVMDEFGA-NEIWKKLFTTEPF 316 (396)
Q Consensus 292 ~~~IW~l~~~~~-~~~W~~~~~i~~~ 316 (396)
++||+|++++. +.+|+|.++|+..
T Consensus 72 -~~IWvm~~~~~~~~SWtK~~~i~~~ 96 (164)
T PF07734_consen 72 -IEIWVMKKYGYGKESWTKLFTIDLP 96 (164)
T ss_pred -EEEEEEeeeccCcceEEEEEEEecC
Confidence 99999997652 7899999999854
No 3
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=99.69 E-value=4.8e-16 Score=126.42 Aligned_cols=111 Identities=23% Similarity=0.424 Sum_probs=85.0
Q ss_pred eEEEcceEEEEEeccCCcccccCCCCccEEEEEeCCCceeeeecCCCCccccccccceEEEecCeeEEEEeecCCCccEE
Q 016018 214 CQYFRGACYWILWDKSVGINYNNLVNGDFIFSFDMSDEVFQKLPVPNILNEIDQEFSKLTVLNESLAFVLRDKYRKSYEI 293 (396)
Q Consensus 214 ~v~~~G~lywl~~~~~~~~~~~~~~~~~~il~fD~~~e~~~~i~lP~~~~~~~~~~~~l~~~~g~L~~~~~~~~~~~~~~ 293 (396)
|+++||++||++... ......|++||+++|+|+.+++|.. .........|++++|+|+++..........+
T Consensus 1 gicinGvly~~a~~~--------~~~~~~IvsFDv~~E~f~~i~~P~~-~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~ 71 (129)
T PF08268_consen 1 GICINGVLYWLAWSE--------DSDNNVIVSFDVRSEKFRFIKLPED-PYSSDCSSTLIEYKGKLALVSYNDQGEPDSI 71 (129)
T ss_pred CEEECcEEEeEEEEC--------CCCCcEEEEEEcCCceEEEEEeeee-eccccCccEEEEeCCeEEEEEecCCCCcceE
Confidence 689999999999873 2346799999999999999999921 1233456789999999999988764321239
Q ss_pred EEEEEccCCCCCCeEEEEEecCCC-------CcceeEEEEeCCcEEEE
Q 016018 294 QIWVMDEFGANEIWKKLFTTEPFC-------EIKRPLSFCERGELIME 334 (396)
Q Consensus 294 ~IW~l~~~~~~~~W~~~~~i~~~~-------~~~~p~~~~~~g~il~~ 334 (396)
+||+|+|++ +++|++++.+-+.. ....++++.++|+|++.
T Consensus 72 ~iWvLeD~~-k~~Wsk~~~~lp~~~~~~~~~~~~~~~g~~~~Geiv~~ 118 (129)
T PF08268_consen 72 DIWVLEDYE-KQEWSKKHIVLPPSWQHFVHDCDFSFVGVTDTGEIVFA 118 (129)
T ss_pred EEEEeeccc-cceEEEEEEECChHHhcccCCcEEEEEEEcCCCEEEEE
Confidence 999999997 68999987754321 12456777888998887
No 4
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=99.54 E-value=6.1e-12 Score=117.66 Aligned_cols=307 Identities=13% Similarity=0.119 Sum_probs=154.9
Q ss_pred CCCCCCCcHHHHHHHhhcCC-ccccccccccchhhhhhhCChHHHHHHHhccccCCCCeEEEEeccCcccccccCceEEE
Q 016018 1 MAGFSDLPEELVFKILVLLP-VDSLLCSKCVQKSWYSLITNSRFVVKHLRNQIRNKNSCALVISRPISFDISEANGLFFH 79 (396)
Q Consensus 1 m~~~~~LP~Dll~eIL~rLP-~~sl~r~r~VcK~W~~li~~~~F~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 79 (396)
|+.|++||+||+..|..||| .-+++|||+|||+||+.+....= ..++ .+ . +.+++.. ..+..+.. +
T Consensus 1 ~~~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~~~~-~~~~----~~-~-~~~~~~~-~~~~~~~~-----~ 67 (373)
T PLN03215 1 MADWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSGVGK-KNPF----RT-R-PLILFNP-INPSETLT-----D 67 (373)
T ss_pred CCChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhcccccc-cCCc----cc-c-cccccCc-ccCCCCcc-----c
Confidence 89999999999999999998 66999999999999997764110 0000 00 0 1111111 00000000 0
Q ss_pred eecCCCcccccccccCcccCCCCCeEE---EeeeCceEEEeEcC---CcEEEEcchhhhhccccccccCCCCcce----e
Q 016018 80 FCDCNHIFTVGKIIEYRWYEDKPDYKL---VGHCHGIVCFALLS---GRVVLANPAIREFRHLREHCYHSFSYWM----G 149 (396)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~sc~GLlc~~~~~---~~~~V~NP~T~~~~~LP~~~~~~~~~~~----~ 149 (396)
.+. .....-.. +.....+.+ .++..|+|.-...+ +.+.+-||++|....+|+....-..... .
T Consensus 68 -~~~-~~~~~~~~-----ls~~~~~r~~~~~~~~~~WLik~~~~~~~~~~~Ll~PLsr~~~~~~~~~lnll~f~v~ei~~ 140 (373)
T PLN03215 68 -DRS-YISRPGAF-----LSRAAFFRVTLSSSPSKGWLIKSDMDVNSGRFHLLNPLSRLPLRHSSESVDLLEFTVSEIRE 140 (373)
T ss_pred -ccc-ccccccce-----eeeeEEEEeecCCCCCCCcEEEEeccccCCccEecCccccCccCCCCccceeeeeEEEEccc
Confidence 000 00000000 000001111 13568988765543 6899999999998888753221000000 1
Q ss_pred EEEE-EEecC---CCCeEEEEEEEEeCCCCcccceEEEEEcC------CCccccccccccccccccccccCCcceEEEcc
Q 016018 150 CVGF-GYDVK---SNDYKVVRILCISDGSGLCHLKVEVYTLS------ADCWRELVANIDFLGAGTRFLKDNFECQYFRG 219 (396)
Q Consensus 150 ~~~~-g~d~~---~~~yKVv~~~~~~~~~~~~~~~~evys~~------t~~Wr~~~~~~~~~~~~~~~~~~~~~~v~~~G 219 (396)
.+.+ +.+.. ...|+.+.+.......+.....+-|+.-+ .++|..++. .. .... .-|+.+|
T Consensus 141 ~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~i~~~g~l~~w~~~~Wt~l~~--------~~-~~~~-DIi~~kG 210 (373)
T PLN03215 141 AYQVLDWAKRRETRPGYQRSALVKVKEGDNHRDGVLGIGRDGKINYWDGNVLKALKQ--------MG-YHFS-DIIVHKG 210 (373)
T ss_pred eEEEEecccccccccceeEEEEEEeecCCCcceEEEEEeecCcEeeecCCeeeEccC--------CC-ceee-EEEEECC
Confidence 1111 11100 01132111111111111111233333222 356776652 11 1222 4899999
Q ss_pred eEEEEEeccCCcccccCCCCccEEEEEeCCCceeeeecCCCC--cc-ccccccceEEEecCeeEEEEeecC---------
Q 016018 220 ACYWILWDKSVGINYNNLVNGDFIFSFDMSDEVFQKLPVPNI--LN-EIDQEFSKLTVLNESLAFVLRDKY--------- 287 (396)
Q Consensus 220 ~lywl~~~~~~~~~~~~~~~~~~il~fD~~~e~~~~i~lP~~--~~-~~~~~~~~l~~~~g~L~~~~~~~~--------- 287 (396)
.+|-+...+ .+.++|.+-+ .+++..+-. .. ........|++..|.|.+|.....
T Consensus 211 kfYAvD~~G-------------~l~~i~~~l~-i~~v~~~i~~~~~~g~~~~~~yLVEs~GdLLmV~R~~~~~~~~~~~~ 276 (373)
T PLN03215 211 QTYALDSIG-------------IVYWINSDLE-FSRFGTSLDENITDGCWTGDRRFVECCGELYIVERLPKESTWKRKAD 276 (373)
T ss_pred EEEEEcCCC-------------eEEEEecCCc-eeeecceecccccCCcccCceeEEEECCEEEEEEEEccCcccccccc
Confidence 999875433 5667774321 222221110 00 011134679999999999988531
Q ss_pred ----CCccEEEEEEEccCCCCCCeEEEEEecCC---CCcceeEEEE-------eCCcEEEEecCCeEEEEECCCCcEEEE
Q 016018 288 ----RKSYEIQIWVMDEFGANEIWKKLFTTEPF---CEIKRPLSFC-------ERGELIMEDYYREACSYNLGTKEIKKL 353 (396)
Q Consensus 288 ----~~~~~~~IW~l~~~~~~~~W~~~~~i~~~---~~~~~p~~~~-------~~g~il~~~~~~~l~~yd~~t~~~~~~ 353 (396)
..+..++|+.++.. ...|+++.+++-. -+....+.+. +.+-|+|. .+....+||++.++...+
T Consensus 277 ~~~~~~t~~f~VfklD~~--~~~WveV~sLgd~aLFlG~~~s~sv~a~e~pG~k~NcIYFt-dd~~~~v~~~~dg~~~~~ 353 (373)
T PLN03215 277 GFEYSRTVGFKVYKFDDE--LAKWMEVKTLGDNAFVMATDTCFSVLAHEFYGCLPNSIYFT-EDTMPKVFKLDNGNGSSI 353 (373)
T ss_pred cccccceeEEEEEEEcCC--CCcEEEecccCCeEEEEECCccEEEecCCCCCccCCEEEEE-CCCcceEEECCCCCccce
Confidence 12234899999853 4789999888621 0111122221 33457676 456788999999997655
Q ss_pred e
Q 016018 354 P 354 (396)
Q Consensus 354 ~ 354 (396)
.
T Consensus 354 ~ 354 (373)
T PLN03215 354 E 354 (373)
T ss_pred E
Confidence 4
No 5
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.96 E-value=3.7e-10 Score=74.22 Aligned_cols=43 Identities=23% Similarity=0.463 Sum_probs=37.0
Q ss_pred CCCCcHHHHHHHhhcCCccccccccccchhhhhhhCChHHHHH
Q 016018 4 FSDLPEELVFKILVLLPVDSLLCSKCVQKSWYSLITNSRFVVK 46 (396)
Q Consensus 4 ~~~LP~Dll~eIL~rLP~~sl~r~r~VcK~W~~li~~~~F~~~ 46 (396)
|..||+|++.+||..||+++++++.+|||+|+.++.++.+.+.
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~~ 43 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWRR 43 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHHH
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhhh
Confidence 5789999999999999999999999999999999998855443
No 6
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.85 E-value=6.4e-10 Score=73.50 Aligned_cols=46 Identities=37% Similarity=0.551 Sum_probs=39.0
Q ss_pred CCCCCcHHHHHHHhhcCCccccccccccchhhhhhhCChHHHHHHH
Q 016018 3 GFSDLPEELVFKILVLLPVDSLLCSKCVQKSWYSLITNSRFVVKHL 48 (396)
Q Consensus 3 ~~~~LP~Dll~eIL~rLP~~sl~r~r~VcK~W~~li~~~~F~~~~~ 48 (396)
++.+||+|++.+||.+|+++++++++.|||+|++++.++.+...+.
T Consensus 2 ~~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~~ 47 (48)
T PF00646_consen 2 PLSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKII 47 (48)
T ss_dssp HHHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHHH
T ss_pred CHHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHHh
Confidence 3567999999999999999999999999999999999999877653
No 7
>PHA02713 hypothetical protein; Provisional
Probab=98.81 E-value=7.1e-07 Score=90.32 Aligned_cols=221 Identities=14% Similarity=0.079 Sum_probs=131.5
Q ss_pred EeeeCceEEEeEcC-------CcEEEEcchhhhhccccccccCCCCcceeEEEEEEecCCCCeEEEEEEEEeCCCCcccc
Q 016018 107 VGHCHGIVCFALLS-------GRVVLANPAIREFRHLREHCYHSFSYWMGCVGFGYDVKSNDYKVVRILCISDGSGLCHL 179 (396)
Q Consensus 107 ~~sc~GLlc~~~~~-------~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~yKVv~~~~~~~~~~~~~~ 179 (396)
++..+|.|.+..+. +.+..+||.+++|..+|+.+.+. .....+ .++ =||..+++.... ....
T Consensus 299 ~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R--~~~~~~--~~~-----g~IYviGG~~~~--~~~~ 367 (557)
T PHA02713 299 SAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNR--CRFSLA--VID-----DTIYAIGGQNGT--NVER 367 (557)
T ss_pred EEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchh--hceeEE--EEC-----CEEEEECCcCCC--CCCc
Confidence 44556666444321 36889999999999999876542 111111 112 267777654221 1235
Q ss_pred eEEEEEcCCCccccccccccccccccccccCCcceEEEcceEEEEEeccCCc-c------c----ccCCCCccEEEEEeC
Q 016018 180 KVEVYTLSADCWRELVANIDFLGAGTRFLKDNFECQYFRGACYWILWDKSVG-I------N----YNNLVNGDFIFSFDM 248 (396)
Q Consensus 180 ~~evys~~t~~Wr~~~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~-~------~----~~~~~~~~~il~fD~ 248 (396)
.+|+|+..+++|..++. ++.+ ......+.++|.+|-+....... + + ..+......+.+||+
T Consensus 368 sve~Ydp~~~~W~~~~~------mp~~--r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP 439 (557)
T PHA02713 368 TIECYTMGDDKWKMLPD------MPIA--LSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDT 439 (557)
T ss_pred eEEEEECCCCeEEECCC------CCcc--cccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECC
Confidence 79999999999999874 2122 12224788999999886432100 0 0 000011346899999
Q ss_pred CCceeeeec-CCCCccccccccceEEEecCeeEEEEeecCCCccEEEEEEEccCCCC-CCeEEEEEecCCCCcceeEEEE
Q 016018 249 SDEVFQKLP-VPNILNEIDQEFSKLTVLNESLAFVLRDKYRKSYEIQIWVMDEFGAN-EIWKKLFTTEPFCEIKRPLSFC 326 (396)
Q Consensus 249 ~~e~~~~i~-lP~~~~~~~~~~~~l~~~~g~L~~~~~~~~~~~~~~~IW~l~~~~~~-~~W~~~~~i~~~~~~~~p~~~~ 326 (396)
++++|+.++ +|.. .....+++++|+|++++...+.....-.+-..+- .. .+|+..-.++... ....+++
T Consensus 440 ~td~W~~v~~m~~~-----r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp--~~~~~W~~~~~m~~~r-~~~~~~~- 510 (557)
T PHA02713 440 VNNIWETLPNFWTG-----TIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNT--NTYNGWELITTTESRL-SALHTIL- 510 (557)
T ss_pred CCCeEeecCCCCcc-----cccCcEEEECCEEEEEeCCCCCCccceeEEEecC--CCCCCeeEccccCccc-ccceeEE-
Confidence 999999873 3331 1224578999999999875432210001222222 13 4799887665322 1222333
Q ss_pred eCCcEEEEec-CC--eEEEEECCCCcEEEEee
Q 016018 327 ERGELIMEDY-YR--EACSYNLGTKEIKKLPV 355 (396)
Q Consensus 327 ~~g~il~~~~-~~--~l~~yd~~t~~~~~~~~ 355 (396)
-+|.|++++. ++ .+-+||++|++|+.+.-
T Consensus 511 ~~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~ 542 (557)
T PHA02713 511 HDNTIMMLHCYESYMLQDTFNVYTYEWNHICH 542 (557)
T ss_pred ECCEEEEEeeecceeehhhcCcccccccchhh
Confidence 3677887754 22 58899999999998763
No 8
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.73 E-value=4.1e-09 Score=67.01 Aligned_cols=39 Identities=38% Similarity=0.622 Sum_probs=37.1
Q ss_pred CcHHHHHHHhhcCCccccccccccchhhhhhhCChHHHH
Q 016018 7 LPEELVFKILVLLPVDSLLCSKCVQKSWYSLITNSRFVV 45 (396)
Q Consensus 7 LP~Dll~eIL~rLP~~sl~r~r~VcK~W~~li~~~~F~~ 45 (396)
||+|++.+||.+|++++++++++|||+|+.++.++.|.+
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~ 39 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWF 39 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhh
Confidence 799999999999999999999999999999999998864
No 9
>PHA03098 kelch-like protein; Provisional
Probab=98.68 E-value=3.8e-06 Score=85.13 Aligned_cols=200 Identities=14% Similarity=0.055 Sum_probs=123.4
Q ss_pred cEEEEcchhhhhccccccccCCCCcceeEEEEEEecCCCCeEEEEEEEEeCCCCcccceEEEEEcCCCcccccccccccc
Q 016018 122 RVVLANPAIREFRHLREHCYHSFSYWMGCVGFGYDVKSNDYKVVRILCISDGSGLCHLKVEVYTLSADCWRELVANIDFL 201 (396)
Q Consensus 122 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~yKVv~~~~~~~~~~~~~~~~evys~~t~~Wr~~~~~~~~~ 201 (396)
.++.+||.|++|..+|+.+.+. .....+. .+ =++..+++... ......+++|+..+++|+..+. .
T Consensus 312 ~v~~yd~~~~~W~~~~~~~~~R--~~~~~~~--~~-----~~lyv~GG~~~--~~~~~~v~~yd~~~~~W~~~~~----l 376 (534)
T PHA03098 312 SVVSYDTKTKSWNKVPELIYPR--KNPGVTV--FN-----NRIYVIGGIYN--SISLNTVESWKPGESKWREEPP----L 376 (534)
T ss_pred cEEEEeCCCCeeeECCCCCccc--ccceEEE--EC-----CEEEEEeCCCC--CEecceEEEEcCCCCceeeCCC----c
Confidence 7899999999999999876542 1111111 11 24666654331 1123678999999999998774 1
Q ss_pred ccccccccCCcceEEEcceEEEEEeccCCcccccCCCCccEEEEEeCCCceeeeec-CCCCccccccccceEEEecCeeE
Q 016018 202 GAGTRFLKDNFECQYFRGACYWILWDKSVGINYNNLVNGDFIFSFDMSDEVFQKLP-VPNILNEIDQEFSKLTVLNESLA 280 (396)
Q Consensus 202 ~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~~~~~~il~fD~~~e~~~~i~-lP~~~~~~~~~~~~l~~~~g~L~ 280 (396)
+.+ ......+.++|.+|-+..... +......+..||+.+++|..++ +|.. . .....+..+|+|+
T Consensus 377 --p~~--r~~~~~~~~~~~iYv~GG~~~------~~~~~~~v~~yd~~t~~W~~~~~~p~~---r--~~~~~~~~~~~iy 441 (534)
T PHA03098 377 --IFP--RYNPCVVNVNNLIYVIGGISK------NDELLKTVECFSLNTNKWSKGSPLPIS---H--YGGCAIYHDGKIY 441 (534)
T ss_pred --CcC--CccceEEEECCEEEEECCcCC------CCcccceEEEEeCCCCeeeecCCCCcc---c--cCceEEEECCEEE
Confidence 122 122347788999998765321 0111357899999999999873 4442 1 1234677899999
Q ss_pred EEEeecCCCc--cEEEEEEEccCCCCCCeEEEEEecCCCCcceeEEEEeCCcEEEEec------CCeEEEEECCCCcEEE
Q 016018 281 FVLRDKYRKS--YEIQIWVMDEFGANEIWKKLFTTEPFCEIKRPLSFCERGELIMEDY------YREACSYNLGTKEIKK 352 (396)
Q Consensus 281 ~~~~~~~~~~--~~~~IW~l~~~~~~~~W~~~~~i~~~~~~~~p~~~~~~g~il~~~~------~~~l~~yd~~t~~~~~ 352 (396)
+++....... ..-.+|..+-. ..+|++.-.++.. .....+++ -+|.|++.+. ...+..||+++++|+.
T Consensus 442 v~GG~~~~~~~~~~~~v~~yd~~--~~~W~~~~~~~~~-r~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~ 517 (534)
T PHA03098 442 VIGGISYIDNIKVYNIVESYNPV--TNKWTELSSLNFP-RINASLCI-FNNKIYVVGGDKYEYYINEIEVYDDKTNTWTL 517 (534)
T ss_pred EECCccCCCCCcccceEEEecCC--CCceeeCCCCCcc-cccceEEE-ECCEEEEEcCCcCCcccceeEEEeCCCCEEEe
Confidence 8887542211 00236666642 5689986544322 22222333 3677877753 2368999999999987
Q ss_pred Eee
Q 016018 353 LPV 355 (396)
Q Consensus 353 ~~~ 355 (396)
+..
T Consensus 518 ~~~ 520 (534)
T PHA03098 518 FCK 520 (534)
T ss_pred cCC
Confidence 753
No 10
>PLN02193 nitrile-specifier protein
Probab=98.54 E-value=2e-05 Score=78.39 Aligned_cols=208 Identities=8% Similarity=-0.053 Sum_probs=122.8
Q ss_pred cEEEEcchhhhhccccccc-cCCCCcceeEEEEEEecCCCCeEEEEEEEEeCCCCcccceEEEEEcCCCccccccccccc
Q 016018 122 RVVLANPAIREFRHLREHC-YHSFSYWMGCVGFGYDVKSNDYKVVRILCISDGSGLCHLKVEVYTLSADCWRELVANIDF 200 (396)
Q Consensus 122 ~~~V~NP~T~~~~~LP~~~-~~~~~~~~~~~~~g~d~~~~~yKVv~~~~~~~~~~~~~~~~evys~~t~~Wr~~~~~~~~ 200 (396)
.++++||.+.+|..+|+.. .|........ ...++ =++..++..... .....+++|++.+++|+.+....
T Consensus 194 ~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~-~v~~~-----~~lYvfGG~~~~--~~~ndv~~yD~~t~~W~~l~~~~-- 263 (470)
T PLN02193 194 HLYVFDLETRTWSISPATGDVPHLSCLGVR-MVSIG-----STLYVFGGRDAS--RQYNGFYSFDTTTNEWKLLTPVE-- 263 (470)
T ss_pred cEEEEECCCCEEEeCCCCCCCCCCcccceE-EEEEC-----CEEEEECCCCCC--CCCccEEEEECCCCEEEEcCcCC--
Confidence 5899999999999887532 2211111111 11111 245555543211 12357899999999999986410
Q ss_pred cccccccccCCcceEEEcceEEEEEeccCCcccccCCCCccEEEEEeCCCceeeeecCCCCccccccccceEEEecCeeE
Q 016018 201 LGAGTRFLKDNFECQYFRGACYWILWDKSVGINYNNLVNGDFIFSFDMSDEVFQKLPVPNILNEIDQEFSKLTVLNESLA 280 (396)
Q Consensus 201 ~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~~~~~~il~fD~~~e~~~~i~lP~~~~~~~~~~~~l~~~~g~L~ 280 (396)
..+.+ ......+.+++.+|-+..... ......+.+||+.+.+|..++.|... ........++..+|+++
T Consensus 264 -~~P~~--R~~h~~~~~~~~iYv~GG~~~-------~~~~~~~~~yd~~t~~W~~~~~~~~~-~~~R~~~~~~~~~gkiy 332 (470)
T PLN02193 264 -EGPTP--RSFHSMAADEENVYVFGGVSA-------TARLKTLDSYNIVDKKWFHCSTPGDS-FSIRGGAGLEVVQGKVW 332 (470)
T ss_pred -CCCCC--ccceEEEEECCEEEEECCCCC-------CCCcceEEEEECCCCEEEeCCCCCCC-CCCCCCcEEEEECCcEE
Confidence 00111 112236778999998764431 11234688999999999988654311 11112245677899999
Q ss_pred EEEeecCCCccEEEEEEEccCCCCCCeEEEEEecC--CCCcceeEEEEeCCcEEEEecC---------------CeEEEE
Q 016018 281 FVLRDKYRKSYEIQIWVMDEFGANEIWKKLFTTEP--FCEIKRPLSFCERGELIMEDYY---------------REACSY 343 (396)
Q Consensus 281 ~~~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~i~~--~~~~~~p~~~~~~g~il~~~~~---------------~~l~~y 343 (396)
++........ -++|+++-. ..+|++...+.. ........++ -++.|++.... ..+..|
T Consensus 333 viGG~~g~~~--~dv~~yD~~--t~~W~~~~~~g~~P~~R~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~ 407 (470)
T PLN02193 333 VVYGFNGCEV--DDVHYYDPV--QDKWTQVETFGVRPSERSVFASAA-VGKHIVIFGGEIAMDPLAHVGPGQLTDGTFAL 407 (470)
T ss_pred EEECCCCCcc--CceEEEECC--CCEEEEeccCCCCCCCcceeEEEE-ECCEEEEECCccCCccccccCccceeccEEEE
Confidence 8887543333 568888753 567999876531 1222222333 35566665331 148999
Q ss_pred ECCCCcEEEEee
Q 016018 344 NLGTKEIKKLPV 355 (396)
Q Consensus 344 d~~t~~~~~~~~ 355 (396)
|+++++|+.+..
T Consensus 408 D~~t~~W~~~~~ 419 (470)
T PLN02193 408 DTETLQWERLDK 419 (470)
T ss_pred EcCcCEEEEccc
Confidence 999999998764
No 11
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=98.53 E-value=1.1e-05 Score=81.61 Aligned_cols=214 Identities=12% Similarity=0.081 Sum_probs=136.4
Q ss_pred EEeeeCceEEEeEc-C------CcEEEEcchhhhhccccccccCCCCcceeEEEEEEecCCCCeEEEEEEEEeCCCCccc
Q 016018 106 LVGHCHGIVCFALL-S------GRVVLANPAIREFRHLREHCYHSFSYWMGCVGFGYDVKSNDYKVVRILCISDGSGLCH 178 (396)
Q Consensus 106 ~~~sc~GLlc~~~~-~------~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~yKVv~~~~~~~~~~~~~ 178 (396)
-++..+|.|-+..+ + +.+..+||.|.+|..+|+...++ ..+|.+ .-+.++..+++.... ...
T Consensus 327 ~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R-----~~~~v~----~l~g~iYavGG~dg~--~~l 395 (571)
T KOG4441|consen 327 GVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKR-----SDFGVA----VLDGKLYAVGGFDGE--KSL 395 (571)
T ss_pred cEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCcc-----ccceeE----EECCEEEEEeccccc--ccc
Confidence 35566777755432 2 37899999999999999886542 112222 124567777654321 133
Q ss_pred ceEEEEEcCCCccccccccccccccccccccCCcceEEEcceEEEEEeccCCcccccCCCCccEEEEEeCCCceeeee-c
Q 016018 179 LKVEVYTLSADCWRELVANIDFLGAGTRFLKDNFECQYFRGACYWILWDKSVGINYNNLVNGDFIFSFDMSDEVFQKL-P 257 (396)
Q Consensus 179 ~~~evys~~t~~Wr~~~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~~~~~~il~fD~~~e~~~~i-~ 257 (396)
..+|.|+..++.|..++. +.. ...+...+.++|.+|-+..... .......+-+||..+++|+.+ +
T Consensus 396 ~svE~YDp~~~~W~~va~------m~~--~r~~~gv~~~~g~iYi~GG~~~------~~~~l~sve~YDP~t~~W~~~~~ 461 (571)
T KOG4441|consen 396 NSVECYDPVTNKWTPVAP------MLT--RRSGHGVAVLGGKLYIIGGGDG------SSNCLNSVECYDPETNTWTLIAP 461 (571)
T ss_pred ccEEEecCCCCcccccCC------CCc--ceeeeEEEEECCEEEEEcCcCC------CccccceEEEEcCCCCceeecCC
Confidence 689999999999999884 212 1223358999999999876441 111346899999999999976 3
Q ss_pred CCCCccccccccceEEEecCeeEEEEeecCCCccEEEEEEEccCC-CCCCeEEEEEecCCCCcceeEEEEeCCcEEEEec
Q 016018 258 VPNILNEIDQEFSKLTVLNESLAFVLRDKYRKSYEIQIWVMDEFG-ANEIWKKLFTTEPFCEIKRPLSFCERGELIMEDY 336 (396)
Q Consensus 258 lP~~~~~~~~~~~~l~~~~g~L~~~~~~~~~~~~~~~IW~l~~~~-~~~~W~~~~~i~~~~~~~~p~~~~~~g~il~~~~ 336 (396)
++.. .....++.++|+|+++....+... +.- .+-|+ ....|+..-.+..... ..-.+.-++.+++...
T Consensus 462 M~~~-----R~~~g~a~~~~~iYvvGG~~~~~~--~~~--VE~ydp~~~~W~~v~~m~~~rs--~~g~~~~~~~ly~vGG 530 (571)
T KOG4441|consen 462 MNTR-----RSGFGVAVLNGKIYVVGGFDGTSA--LSS--VERYDPETNQWTMVAPMTSPRS--AVGVVVLGGKLYAVGG 530 (571)
T ss_pred cccc-----cccceEEEECCEEEEECCccCCCc--cce--EEEEcCCCCceeEcccCccccc--cccEEEECCEEEEEec
Confidence 4441 122458899999999998765222 221 22221 2568999855543221 1112224556666643
Q ss_pred ------CCeEEEEECCCCcEEEEee
Q 016018 337 ------YREACSYNLGTKEIKKLPV 355 (396)
Q Consensus 337 ------~~~l~~yd~~t~~~~~~~~ 355 (396)
-..+-.||+++++|+...-
T Consensus 531 ~~~~~~l~~ve~ydp~~d~W~~~~~ 555 (571)
T KOG4441|consen 531 FDGNNNLNTVECYDPETDTWTEVTE 555 (571)
T ss_pred ccCccccceeEEcCCCCCceeeCCC
Confidence 2369999999999998653
No 12
>PHA02713 hypothetical protein; Provisional
Probab=98.50 E-value=1.1e-05 Score=81.67 Aligned_cols=199 Identities=14% Similarity=0.086 Sum_probs=120.6
Q ss_pred cEEEEcchhhhhccccccccCCCCcceeEEEEEEecCCCCeEEEEEEEEeCCCCcccceEEEEEcCCCcccccccccccc
Q 016018 122 RVVLANPAIREFRHLREHCYHSFSYWMGCVGFGYDVKSNDYKVVRILCISDGSGLCHLKVEVYTLSADCWRELVANIDFL 201 (396)
Q Consensus 122 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~yKVv~~~~~~~~~~~~~~~~evys~~t~~Wr~~~~~~~~~ 201 (396)
.+..+||.|++|..+++.+.+. .....+. + +=+|..+++.... ......++.|+..++.|..++.
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r--~~~~~a~--l-----~~~IYviGG~~~~-~~~~~~v~~Yd~~~n~W~~~~~----- 337 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHI--INYASAI--V-----DNEIIIAGGYNFN-NPSLNKVYKINIENKIHVELPP----- 337 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccc--cceEEEE--E-----CCEEEEEcCCCCC-CCccceEEEEECCCCeEeeCCC-----
Confidence 5678999999999998776541 1111111 1 2256666643211 1123679999999999998874
Q ss_pred ccccccccCCcceEEEcceEEEEEeccCCcccccCCCCccEEEEEeCCCceeeee-cCCCCccccccccceEEEecCeeE
Q 016018 202 GAGTRFLKDNFECQYFRGACYWILWDKSVGINYNNLVNGDFIFSFDMSDEVFQKL-PVPNILNEIDQEFSKLTVLNESLA 280 (396)
Q Consensus 202 ~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~~~~~~il~fD~~~e~~~~i-~lP~~~~~~~~~~~~l~~~~g~L~ 280 (396)
++.+ ......+.++|.+|-+.... +......+-+||+.+++|..+ ++|.. . .....+.++|+|+
T Consensus 338 -m~~~--R~~~~~~~~~g~IYviGG~~-------~~~~~~sve~Ydp~~~~W~~~~~mp~~---r--~~~~~~~~~g~IY 402 (557)
T PHA02713 338 -MIKN--RCRFSLAVIDDTIYAIGGQN-------GTNVERTIECYTMGDDKWKMLPDMPIA---L--SSYGMCVLDQYIY 402 (557)
T ss_pred -Ccch--hhceeEEEECCEEEEECCcC-------CCCCCceEEEEECCCCeEEECCCCCcc---c--ccccEEEECCEEE
Confidence 2121 12234889999999987543 112234689999999999987 44442 1 1235678999999
Q ss_pred EEEeecCCCc-----------------cEEEEEEEccCCCCCCeEEEEEecCCCCcceeEEEEeCCcEEEEecC------
Q 016018 281 FVLRDKYRKS-----------------YEIQIWVMDEFGANEIWKKLFTTEPFCEIKRPLSFCERGELIMEDYY------ 337 (396)
Q Consensus 281 ~~~~~~~~~~-----------------~~~~IW~l~~~~~~~~W~~~~~i~~~~~~~~p~~~~~~g~il~~~~~------ 337 (396)
+++....... ..-.+...+- ....|+..-.+.... ....+ +.-+|.|++++..
T Consensus 403 viGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP--~td~W~~v~~m~~~r-~~~~~-~~~~~~IYv~GG~~~~~~~ 478 (557)
T PHA02713 403 IIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDT--VNNIWETLPNFWTGT-IRPGV-VSHKDDIYVVCDIKDEKNV 478 (557)
T ss_pred EEeCCCcccccccccccccccccccccccceEEEECC--CCCeEeecCCCCccc-ccCcE-EEECCEEEEEeCCCCCCcc
Confidence 9987542100 0012333332 246798766554321 12223 3345788887531
Q ss_pred -CeEEEEECCC-CcEEEEe
Q 016018 338 -REACSYNLGT-KEIKKLP 354 (396)
Q Consensus 338 -~~l~~yd~~t-~~~~~~~ 354 (396)
..+..||+++ ++|+.+.
T Consensus 479 ~~~ve~Ydp~~~~~W~~~~ 497 (557)
T PHA02713 479 KTCIFRYNTNTYNGWELIT 497 (557)
T ss_pred ceeEEEecCCCCCCeeEcc
Confidence 1367999999 8999765
No 13
>PHA02790 Kelch-like protein; Provisional
Probab=98.50 E-value=1.7e-05 Score=79.11 Aligned_cols=184 Identities=12% Similarity=0.029 Sum_probs=115.9
Q ss_pred cEEEEcchhhhhccccccccCCCCcceeEEEEEEecCCCCeEEEEEEEEeCCCCcccceEEEEEcCCCcccccccccccc
Q 016018 122 RVVLANPAIREFRHLREHCYHSFSYWMGCVGFGYDVKSNDYKVVRILCISDGSGLCHLKVEVYTLSADCWRELVANIDFL 201 (396)
Q Consensus 122 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~yKVv~~~~~~~~~~~~~~~~evys~~t~~Wr~~~~~~~~~ 201 (396)
....+||.+++|..+|+.+.+. .....+ .. +-+|..+++... ...++.|+..+++|..++.
T Consensus 288 ~v~~Ydp~~~~W~~~~~m~~~r--~~~~~v--~~-----~~~iYviGG~~~-----~~sve~ydp~~n~W~~~~~----- 348 (480)
T PHA02790 288 NAIAVNYISNNWIPIPPMNSPR--LYASGV--PA-----NNKLYVVGGLPN-----PTSVERWFHGDAAWVNMPS----- 348 (480)
T ss_pred eEEEEECCCCEEEECCCCCchh--hcceEE--EE-----CCEEEEECCcCC-----CCceEEEECCCCeEEECCC-----
Confidence 5778999999999999876542 111111 11 235666664321 1458999999999998874
Q ss_pred ccccccccCCcceEEEcceEEEEEeccCCcccccCCCCccEEEEEeCCCceeeeecCCCCccccccccceEEEecCeeEE
Q 016018 202 GAGTRFLKDNFECQYFRGACYWILWDKSVGINYNNLVNGDFIFSFDMSDEVFQKLPVPNILNEIDQEFSKLTVLNESLAF 281 (396)
Q Consensus 202 ~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~~~~~~il~fD~~~e~~~~i~lP~~~~~~~~~~~~l~~~~g~L~~ 281 (396)
++.+ ......+.++|.+|-+..... ....+-.||+++++|+.++.++.. . .....+..+|+|++
T Consensus 349 -l~~~--r~~~~~~~~~g~IYviGG~~~---------~~~~ve~ydp~~~~W~~~~~m~~~--r--~~~~~~~~~~~IYv 412 (480)
T PHA02790 349 -LLKP--RCNPAVASINNVIYVIGGHSE---------TDTTTEYLLPNHDQWQFGPSTYYP--H--YKSCALVFGRRLFL 412 (480)
T ss_pred -CCCC--CcccEEEEECCEEEEecCcCC---------CCccEEEEeCCCCEEEeCCCCCCc--c--ccceEEEECCEEEE
Confidence 2111 122348899999998865431 123578899999999987433311 1 12356789999998
Q ss_pred EEeecCCCccEEEEEEEccCCCCCCeEEEEEecCCCCcceeEEEEeCCcEEEEecC------CeEEEEECCCCcEEEE
Q 016018 282 VLRDKYRKSYEIQIWVMDEFGANEIWKKLFTTEPFCEIKRPLSFCERGELIMEDYY------REACSYNLGTKEIKKL 353 (396)
Q Consensus 282 ~~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~i~~~~~~~~p~~~~~~g~il~~~~~------~~l~~yd~~t~~~~~~ 353 (396)
++.. .++. +.. ...|+..-.++... ....+++ -+|.|++++.. ..+-.||+++++|+..
T Consensus 413 ~GG~-------~e~y---dp~-~~~W~~~~~m~~~r-~~~~~~v-~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W~~~ 477 (480)
T PHA02790 413 VGRN-------AEFY---CES-SNTWTLIDDPIYPR-DNPELII-VDNKLLLIGGFYRGSYIDTIEVYNNRTYSWNIW 477 (480)
T ss_pred ECCc-------eEEe---cCC-CCcEeEcCCCCCCc-cccEEEE-ECCEEEEECCcCCCcccceEEEEECCCCeEEec
Confidence 8742 3332 222 56899876554322 2222333 46788887531 3588999999999753
No 14
>PLN02153 epithiospecifier protein
Probab=98.46 E-value=7.7e-05 Score=71.09 Aligned_cols=218 Identities=11% Similarity=-0.005 Sum_probs=119.4
Q ss_pred cEEEEcchhhhhccccccc-cCCCCcceeEEEEEEecCCCCeEEEEEEEEeCCCCcccceEEEEEcCCCccccccccccc
Q 016018 122 RVVLANPAIREFRHLREHC-YHSFSYWMGCVGFGYDVKSNDYKVVRILCISDGSGLCHLKVEVYTLSADCWRELVANIDF 200 (396)
Q Consensus 122 ~~~V~NP~T~~~~~LP~~~-~~~~~~~~~~~~~g~d~~~~~yKVv~~~~~~~~~~~~~~~~evys~~t~~Wr~~~~~~~~ 200 (396)
.++++||.+.+|..+|+.. .|..... .++.... +=||+.++...... ....+++|+..+++|+.++....
T Consensus 51 ~~~~yd~~~~~W~~~~~~~~~p~~~~~--~~~~~~~----~~~iyv~GG~~~~~--~~~~v~~yd~~t~~W~~~~~~~~- 121 (341)
T PLN02153 51 DLYVFDFNTHTWSIAPANGDVPRISCL--GVRMVAV----GTKLYIFGGRDEKR--EFSDFYSYDTVKNEWTFLTKLDE- 121 (341)
T ss_pred cEEEEECCCCEEEEcCccCCCCCCccC--ceEEEEE----CCEEEEECCCCCCC--ccCcEEEEECCCCEEEEeccCCC-
Confidence 7899999999999988653 2211110 1111111 12566666432211 22578999999999998764100
Q ss_pred cccccccccCCcceEEEcceEEEEEeccCCcccccCCCCccEEEEEeCCCceeeeecCCCCccccccccceEEEecCeeE
Q 016018 201 LGAGTRFLKDNFECQYFRGACYWILWDKSVGINYNNLVNGDFIFSFDMSDEVFQKLPVPNILNEIDQEFSKLTVLNESLA 280 (396)
Q Consensus 201 ~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~~~~~~il~fD~~~e~~~~i~lP~~~~~~~~~~~~l~~~~g~L~ 280 (396)
...+.+ ......+..+|.+|-+......... ........+.+||+.+++|..++.+... ........++..+|+|+
T Consensus 122 ~~~p~~--R~~~~~~~~~~~iyv~GG~~~~~~~-~~~~~~~~v~~yd~~~~~W~~l~~~~~~-~~~r~~~~~~~~~~~iy 197 (341)
T PLN02153 122 EGGPEA--RTFHSMASDENHVYVFGGVSKGGLM-KTPERFRTIEAYNIADGKWVQLPDPGEN-FEKRGGAGFAVVQGKIW 197 (341)
T ss_pred CCCCCC--ceeeEEEEECCEEEEECCccCCCcc-CCCcccceEEEEECCCCeEeeCCCCCCC-CCCCCcceEEEECCeEE
Confidence 000111 1122467889999987653310000 0000123688999999999987543210 01111234678899999
Q ss_pred EEEeecCC------C-ccEEEEEEEccCCCCCCeEEEEEecC--CCCcceeEEEEeCCcEEEEecC--------------
Q 016018 281 FVLRDKYR------K-SYEIQIWVMDEFGANEIWKKLFTTEP--FCEIKRPLSFCERGELIMEDYY-------------- 337 (396)
Q Consensus 281 ~~~~~~~~------~-~~~~~IW~l~~~~~~~~W~~~~~i~~--~~~~~~p~~~~~~g~il~~~~~-------------- 337 (396)
++...... . ...-++++++-. ..+|+++..... .........+ -++.|++....
T Consensus 198 v~GG~~~~~~~gG~~~~~~~~v~~yd~~--~~~W~~~~~~g~~P~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~ 274 (341)
T PLN02153 198 VVYGFATSILPGGKSDYESNAVQFFDPA--SGKWTEVETTGAKPSARSVFAHAV-VGKYIIIFGGEVWPDLKGHLGPGTL 274 (341)
T ss_pred EEeccccccccCCccceecCceEEEEcC--CCcEEeccccCCCCCCcceeeeEE-ECCEEEEECcccCCccccccccccc
Confidence 88653210 0 000246666532 467998765432 1111222222 34566666331
Q ss_pred -CeEEEEECCCCcEEEEee
Q 016018 338 -REACSYNLGTKEIKKLPV 355 (396)
Q Consensus 338 -~~l~~yd~~t~~~~~~~~ 355 (396)
..++.||+++++|+.+..
T Consensus 275 ~n~v~~~d~~~~~W~~~~~ 293 (341)
T PLN02153 275 SNEGYALDTETLVWEKLGE 293 (341)
T ss_pred cccEEEEEcCccEEEeccC
Confidence 268999999999998753
No 15
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=98.45 E-value=6.6e-05 Score=71.69 Aligned_cols=226 Identities=12% Similarity=0.061 Sum_probs=125.8
Q ss_pred eeCceEEEeEc--CCcEEEEc--chhhhhcccccccc-CCCCcceeEEEEEEecCCCCeEEEEEEEEeCCC----Ccccc
Q 016018 109 HCHGIVCFALL--SGRVVLAN--PAIREFRHLREHCY-HSFSYWMGCVGFGYDVKSNDYKVVRILCISDGS----GLCHL 179 (396)
Q Consensus 109 sc~GLlc~~~~--~~~~~V~N--P~T~~~~~LP~~~~-~~~~~~~~~~~~g~d~~~~~yKVv~~~~~~~~~----~~~~~ 179 (396)
..++-|.+..+ .+.+++.+ |.+++|..+|+.+. ++ .....+. .+ =+|..++...... .....
T Consensus 15 ~~~~~vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~p~~~R--~~~~~~~--~~-----~~iYv~GG~~~~~~~~~~~~~~ 85 (346)
T TIGR03547 15 IIGDKVYVGLGSAGTSWYKLDLKKPSKGWQKIADFPGGPR--NQAVAAA--ID-----GKLYVFGGIGKANSEGSPQVFD 85 (346)
T ss_pred EECCEEEEEccccCCeeEEEECCCCCCCceECCCCCCCCc--ccceEEE--EC-----CEEEEEeCCCCCCCCCcceecc
Confidence 44555544332 23677777 47789999997653 21 1111111 12 2577776543211 01125
Q ss_pred eEEEEEcCCCccccccccccccccccccccCCcceE-EEcceEEEEEeccCCccc--------ccC--------------
Q 016018 180 KVEVYTLSADCWRELVANIDFLGAGTRFLKDNFECQ-YFRGACYWILWDKSVGIN--------YNN-------------- 236 (396)
Q Consensus 180 ~~evys~~t~~Wr~~~~~~~~~~~~~~~~~~~~~~v-~~~G~lywl~~~~~~~~~--------~~~-------------- 236 (396)
.++.|+..+++|+.++. ..+.. ......+ .++|.+|-+........+ .+.
T Consensus 86 ~v~~Yd~~~~~W~~~~~-----~~p~~--~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (346)
T TIGR03547 86 DVYRYDPKKNSWQKLDT-----RSPVG--LLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFS 158 (346)
T ss_pred cEEEEECCCCEEecCCC-----CCCCc--ccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhC
Confidence 79999999999999863 11111 1111133 579999987643210000 000
Q ss_pred -----CCCccEEEEEeCCCceeeee-cCCCCccccccccceEEEecCeeEEEEeecCCCccEEEEEEEccCCCCCCeEEE
Q 016018 237 -----LVNGDFIFSFDMSDEVFQKL-PVPNILNEIDQEFSKLTVLNESLAFVLRDKYRKSYEIQIWVMDEFGANEIWKKL 310 (396)
Q Consensus 237 -----~~~~~~il~fD~~~e~~~~i-~lP~~~~~~~~~~~~l~~~~g~L~~~~~~~~~~~~~~~IW~l~~~~~~~~W~~~ 310 (396)
......+.+||+.+++|+.+ ++|.. . .....++..+|+|+++...........++|..+-...+..|++.
T Consensus 159 ~~~~~~~~~~~v~~YDp~t~~W~~~~~~p~~-~---r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~ 234 (346)
T TIGR03547 159 QPPEDYFWNKNVLSYDPSTNQWRNLGENPFL-G---TAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKL 234 (346)
T ss_pred CChhHcCccceEEEEECCCCceeECccCCCC-c---CCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeec
Confidence 00124799999999999988 34531 1 11245678899999998764221111567766521124689987
Q ss_pred EEecCCCC-----cceeEEEEeCCcEEEEecC-----------------------CeEEEEECCCCcEEEEe
Q 016018 311 FTTEPFCE-----IKRPLSFCERGELIMEDYY-----------------------REACSYNLGTKEIKKLP 354 (396)
Q Consensus 311 ~~i~~~~~-----~~~p~~~~~~g~il~~~~~-----------------------~~l~~yd~~t~~~~~~~ 354 (396)
-.++.... .....++.-+|+|+++... ..+-+||+++++|+.+.
T Consensus 235 ~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~ 306 (346)
T TIGR03547 235 PPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVG 306 (346)
T ss_pred CCCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccC
Confidence 76643210 0111123356778777431 13568999999998765
No 16
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=98.38 E-value=2.4e-05 Score=79.22 Aligned_cols=198 Identities=12% Similarity=0.111 Sum_probs=129.8
Q ss_pred cEEEEcchhhhhccccccccCCCCcceeEEEEEEecCCCCeEEEEEEEEeCCCCcccceEEEEEcCCCcccccccccccc
Q 016018 122 RVVLANPAIREFRHLREHCYHSFSYWMGCVGFGYDVKSNDYKVVRILCISDGSGLCHLKVEVYTLSADCWRELVANIDFL 201 (396)
Q Consensus 122 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~yKVv~~~~~~~~~~~~~~~~evys~~t~~Wr~~~~~~~~~ 201 (396)
.+...||.+++|..+.+.+.++. ..+.+.- +-+|..+++... .......++.|++.++.|..++.
T Consensus 302 ~ve~yd~~~~~w~~~a~m~~~r~-----~~~~~~~----~~~lYv~GG~~~-~~~~l~~ve~YD~~~~~W~~~a~----- 366 (571)
T KOG4441|consen 302 SVECYDPKTNEWSSLAPMPSPRC-----RVGVAVL----NGKLYVVGGYDS-GSDRLSSVERYDPRTNQWTPVAP----- 366 (571)
T ss_pred eeEEecCCcCcEeecCCCCcccc-----cccEEEE----CCEEEEEccccC-CCcccceEEEecCCCCceeccCC-----
Confidence 67788999999999988765421 1222222 127777776542 11234799999999999999774
Q ss_pred ccccccccCCcceEEEcceEEEEEeccCCcccccCCCCccEEEEEeCCCceeeeec-CCCCccccccccceEEEecCeeE
Q 016018 202 GAGTRFLKDNFECQYFRGACYWILWDKSVGINYNNLVNGDFIFSFDMSDEVFQKLP-VPNILNEIDQEFSKLTVLNESLA 280 (396)
Q Consensus 202 ~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~~~~~~il~fD~~~e~~~~i~-lP~~~~~~~~~~~~l~~~~g~L~ 280 (396)
+... ...-..+.++|.+|-+.... +......+-.||..+++|..+. ++.. ......++.+|+|+
T Consensus 367 -M~~~--R~~~~v~~l~g~iYavGG~d-------g~~~l~svE~YDp~~~~W~~va~m~~~-----r~~~gv~~~~g~iY 431 (571)
T KOG4441|consen 367 -MNTK--RSDFGVAVLDGKLYAVGGFD-------GEKSLNSVECYDPVTNKWTPVAPMLTR-----RSGHGVAVLGGKLY 431 (571)
T ss_pred -ccCc--cccceeEEECCEEEEEeccc-------cccccccEEEecCCCCcccccCCCCcc-----eeeeEEEEECCEEE
Confidence 2121 22235889999999987665 2333457999999999999874 4441 12246789999999
Q ss_pred EEEeecCCCccEEEEEEEccCC-CCCCeEEEEEecCCCCcceeEEEEeCCcEEEEecC------CeEEEEECCCCcEEEE
Q 016018 281 FVLRDKYRKSYEIQIWVMDEFG-ANEIWKKLFTTEPFCEIKRPLSFCERGELIMEDYY------REACSYNLGTKEIKKL 353 (396)
Q Consensus 281 ~~~~~~~~~~~~~~IW~l~~~~-~~~~W~~~~~i~~~~~~~~p~~~~~~g~il~~~~~------~~l~~yd~~t~~~~~~ 353 (396)
++........ .+=..+-|+ ..+.|+.+-.+...... ..+++ -+|.|+.++.. ..+-.||+++++|..+
T Consensus 432 i~GG~~~~~~---~l~sve~YDP~t~~W~~~~~M~~~R~~-~g~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v 506 (571)
T KOG4441|consen 432 IIGGGDGSSN---CLNSVECYDPETNTWTLIAPMNTRRSG-FGVAV-LNGKIYVVGGFDGTSALSSVERYDPETNQWTMV 506 (571)
T ss_pred EEcCcCCCcc---ccceEEEEcCCCCceeecCCccccccc-ceEEE-ECCEEEEECCccCCCccceEEEEcCCCCceeEc
Confidence 9998654331 111122221 35789998877654322 22333 45678877542 2478899999999987
Q ss_pred e
Q 016018 354 P 354 (396)
Q Consensus 354 ~ 354 (396)
.
T Consensus 507 ~ 507 (571)
T KOG4441|consen 507 A 507 (571)
T ss_pred c
Confidence 5
No 17
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=98.31 E-value=0.00011 Score=69.44 Aligned_cols=199 Identities=13% Similarity=0.056 Sum_probs=114.6
Q ss_pred cEEEE-cchhh-hhccccccccCCCCcceeEEEEEEecCCCCeEEEEEEEEeCCCCcccceEEEEEcCCCcc----cccc
Q 016018 122 RVVLA-NPAIR-EFRHLREHCYHSFSYWMGCVGFGYDVKSNDYKVVRILCISDGSGLCHLKVEVYTLSADCW----RELV 195 (396)
Q Consensus 122 ~~~V~-NP~T~-~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~yKVv~~~~~~~~~~~~~~~~evys~~t~~W----r~~~ 195 (396)
.+++. +|..+ +|..+++.+.+. .....+ .++ =+|+.++...... ....++.|++.++.| +.++
T Consensus 40 ~v~~~~~~~~~~~W~~~~~lp~~r--~~~~~~--~~~-----~~lyviGG~~~~~--~~~~v~~~d~~~~~w~~~~~~~~ 108 (323)
T TIGR03548 40 GIYIAKDENSNLKWVKDGQLPYEA--AYGASV--SVE-----NGIYYIGGSNSSE--RFSSVYRITLDESKEELICETIG 108 (323)
T ss_pred eeEEEecCCCceeEEEcccCCccc--cceEEE--EEC-----CEEEEEcCCCCCC--CceeEEEEEEcCCceeeeeeEcC
Confidence 45555 45433 688887665431 111111 222 1466665432211 235788899999888 4443
Q ss_pred ccccccccccccccCCcceEEEcceEEEEEeccCCcccccCCCCccEEEEEeCCCceeeeec-CCCCccccccccceEEE
Q 016018 196 ANIDFLGAGTRFLKDNFECQYFRGACYWILWDKSVGINYNNLVNGDFIFSFDMSDEVFQKLP-VPNILNEIDQEFSKLTV 274 (396)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~~~~~~il~fD~~~e~~~~i~-lP~~~~~~~~~~~~l~~ 274 (396)
. ++.+ .....++.++|.+|-+.... +......+.+||+.+++|+.++ +|... . .....+.
T Consensus 109 ~------lp~~--~~~~~~~~~~~~iYv~GG~~-------~~~~~~~v~~yd~~~~~W~~~~~~p~~~--r--~~~~~~~ 169 (323)
T TIGR03548 109 N------LPFT--FENGSACYKDGTLYVGGGNR-------NGKPSNKSYLFNLETQEWFELPDFPGEP--R--VQPVCVK 169 (323)
T ss_pred C------CCcC--ccCceEEEECCEEEEEeCcC-------CCccCceEEEEcCCCCCeeECCCCCCCC--C--CcceEEE
Confidence 2 2222 11234788899999886532 1112357899999999999884 56421 1 1234578
Q ss_pred ecCeeEEEEeecCCCccEEEEEEEccCCCCCCeEEEEEecCC--C--CcceeEEEEeCCcEEEEecC-------------
Q 016018 275 LNESLAFVLRDKYRKSYEIQIWVMDEFGANEIWKKLFTTEPF--C--EIKRPLSFCERGELIMEDYY------------- 337 (396)
Q Consensus 275 ~~g~L~~~~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~i~~~--~--~~~~p~~~~~~g~il~~~~~------------- 337 (396)
.+++|+++........ .++|..+-. ..+|++.-.+... + ..........++.|++....
T Consensus 170 ~~~~iYv~GG~~~~~~--~~~~~yd~~--~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~ 245 (323)
T TIGR03548 170 LQNELYVFGGGSNIAY--TDGYKYSPK--KNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLA 245 (323)
T ss_pred ECCEEEEEcCCCCccc--cceEEEecC--CCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhh
Confidence 8999999987643222 466766642 4689886544211 1 01111122345667666321
Q ss_pred -------------------------CeEEEEECCCCcEEEEe
Q 016018 338 -------------------------REACSYNLGTKEIKKLP 354 (396)
Q Consensus 338 -------------------------~~l~~yd~~t~~~~~~~ 354 (396)
+.+..||+++++|+.+.
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~ 287 (323)
T TIGR03548 246 TMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIG 287 (323)
T ss_pred hccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEcc
Confidence 35999999999999875
No 18
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=98.30 E-value=0.00012 Score=70.62 Aligned_cols=226 Identities=13% Similarity=0.051 Sum_probs=125.6
Q ss_pred EeeeCceEEEeEc--CCcEEEEcch--hhhhcccccccc-CCCCcceeEEEEEEecCCCCeEEEEEEEEeC-CC---Ccc
Q 016018 107 VGHCHGIVCFALL--SGRVVLANPA--IREFRHLREHCY-HSFSYWMGCVGFGYDVKSNDYKVVRILCISD-GS---GLC 177 (396)
Q Consensus 107 ~~sc~GLlc~~~~--~~~~~V~NP~--T~~~~~LP~~~~-~~~~~~~~~~~~g~d~~~~~yKVv~~~~~~~-~~---~~~ 177 (396)
.+..++-|.+..+ .+.+++.++. +++|..+|+.+. +. .....+.+ + =+|..++.... .. ...
T Consensus 34 ~~~~~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~r--~~~~~v~~--~-----~~IYV~GG~~~~~~~~~~~~ 104 (376)
T PRK14131 34 GAIDNNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGPR--EQAVAAFI--D-----GKLYVFGGIGKTNSEGSPQV 104 (376)
T ss_pred EEEECCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCCCc--ccceEEEE--C-----CEEEEEcCCCCCCCCCceeE
Confidence 4456776655332 2356777764 578999987643 21 11111111 1 24565554322 10 011
Q ss_pred cceEEEEEcCCCccccccccccccccccccccCCcceEE-EcceEEEEEeccCCccc----c------------------
Q 016018 178 HLKVEVYTLSADCWRELVANIDFLGAGTRFLKDNFECQY-FRGACYWILWDKSVGIN----Y------------------ 234 (396)
Q Consensus 178 ~~~~evys~~t~~Wr~~~~~~~~~~~~~~~~~~~~~~v~-~~G~lywl~~~~~~~~~----~------------------ 234 (396)
...+++|+..+++|+.+... .+.. ......+. .+|.||-+.......++ +
T Consensus 105 ~~~v~~YD~~~n~W~~~~~~-----~p~~--~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~ 177 (376)
T PRK14131 105 FDDVYKYDPKTNSWQKLDTR-----SPVG--LAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAY 177 (376)
T ss_pred cccEEEEeCCCCEEEeCCCC-----CCCc--ccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHH
Confidence 25799999999999998731 1111 11112344 79999998654310000 0
Q ss_pred -----cCCCCccEEEEEeCCCceeeeec-CCCCccccccccceEEEecCeeEEEEeecC--CCccEEEEEEEccCCCCCC
Q 016018 235 -----NNLVNGDFIFSFDMSDEVFQKLP-VPNILNEIDQEFSKLTVLNESLAFVLRDKY--RKSYEIQIWVMDEFGANEI 306 (396)
Q Consensus 235 -----~~~~~~~~il~fD~~~e~~~~i~-lP~~~~~~~~~~~~l~~~~g~L~~~~~~~~--~~~~~~~IW~l~~~~~~~~ 306 (396)
........+..||+.+++|+.+. +|.. . .....++..+++|+++..... ..+ .++|..+-...+.+
T Consensus 178 ~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~-~---~~~~a~v~~~~~iYv~GG~~~~~~~~--~~~~~~~~~~~~~~ 251 (376)
T PRK14131 178 FDKKPEDYFFNKEVLSYDPSTNQWKNAGESPFL-G---TAGSAVVIKGNKLWLINGEIKPGLRT--DAVKQGKFTGNNLK 251 (376)
T ss_pred hcCChhhcCcCceEEEEECCCCeeeECCcCCCC-C---CCcceEEEECCEEEEEeeeECCCcCC--hhheEEEecCCCcc
Confidence 00001246999999999999874 5531 1 112346778999999987532 233 67776652222578
Q ss_pred eEEEEEecCCCC------cceeEEEEeCCcEEEEecCC-----------------------eEEEEECCCCcEEEEe
Q 016018 307 WKKLFTTEPFCE------IKRPLSFCERGELIMEDYYR-----------------------EACSYNLGTKEIKKLP 354 (396)
Q Consensus 307 W~~~~~i~~~~~------~~~p~~~~~~g~il~~~~~~-----------------------~l~~yd~~t~~~~~~~ 354 (396)
|++...++.... .....+..-++.|++..... ..-.||+++++|+.+.
T Consensus 252 W~~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~ 328 (376)
T PRK14131 252 WQKLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVG 328 (376)
T ss_pred eeecCCCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccC
Confidence 998887753211 11112233566777764311 2347999999998765
No 19
>PLN02153 epithiospecifier protein
Probab=98.15 E-value=0.00035 Score=66.53 Aligned_cols=179 Identities=9% Similarity=-0.014 Sum_probs=100.7
Q ss_pred EEEEEEEEeCCCCcccceEEEEEcCCCccccccccccccccccccccCCcceEEEcceEEEEEeccCCcccccCCCCccE
Q 016018 163 KVVRILCISDGSGLCHLKVEVYTLSADCWRELVANIDFLGAGTRFLKDNFECQYFRGACYWILWDKSVGINYNNLVNGDF 242 (396)
Q Consensus 163 KVv~~~~~~~~~~~~~~~~evys~~t~~Wr~~~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~~~~~~ 242 (396)
+|+.++............+.+|+..++.|..+... ...+.........+.++|.||-+..... ......
T Consensus 34 ~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~----~~~p~~~~~~~~~~~~~~~iyv~GG~~~-------~~~~~~ 102 (341)
T PLN02153 34 KLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPAN----GDVPRISCLGVRMVAVGTKLYIFGGRDE-------KREFSD 102 (341)
T ss_pred EEEEECCccCCCCceeCcEEEEECCCCEEEEcCcc----CCCCCCccCceEEEEECCEEEEECCCCC-------CCccCc
Confidence 56666543221111124789999999999987631 1011111112246888999998865431 111236
Q ss_pred EEEEeCCCceeeeec-CCCCccccccccceEEEecCeeEEEEeecCCCc-----cEEEEEEEccCCCCCCeEEEEEecC-
Q 016018 243 IFSFDMSDEVFQKLP-VPNILNEIDQEFSKLTVLNESLAFVLRDKYRKS-----YEIQIWVMDEFGANEIWKKLFTTEP- 315 (396)
Q Consensus 243 il~fD~~~e~~~~i~-lP~~~~~~~~~~~~l~~~~g~L~~~~~~~~~~~-----~~~~IW~l~~~~~~~~W~~~~~i~~- 315 (396)
+.+||+.+.+|..++ ++.............+..+++|+++........ .--++|+.+-. ..+|++.-....
T Consensus 103 v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~--~~~W~~l~~~~~~ 180 (341)
T PLN02153 103 FYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIA--DGKWVQLPDPGEN 180 (341)
T ss_pred EEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECC--CCeEeeCCCCCCC
Confidence 889999999999874 311000001122456788999998887642110 00256666642 467997654321
Q ss_pred -CCCcceeEEEEeCCcEEEEec--------------CCeEEEEECCCCcEEEEee
Q 016018 316 -FCEIKRPLSFCERGELIMEDY--------------YREACSYNLGTKEIKKLPV 355 (396)
Q Consensus 316 -~~~~~~p~~~~~~g~il~~~~--------------~~~l~~yd~~t~~~~~~~~ 355 (396)
.......+++ -+++|+++.. ...+..||+++++|+++..
T Consensus 181 ~~~r~~~~~~~-~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~ 234 (341)
T PLN02153 181 FEKRGGAGFAV-VQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVET 234 (341)
T ss_pred CCCCCcceEEE-ECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccc
Confidence 1111222333 3556666421 1358999999999998753
No 20
>PLN02193 nitrile-specifier protein
Probab=98.06 E-value=0.00092 Score=66.53 Aligned_cols=209 Identities=9% Similarity=-0.008 Sum_probs=115.8
Q ss_pred cEEEEcchh----hhhcccccc---ccCCCCcceeEEEEEEecCCCCeEEEEEEEEeCCCCcccceEEEEEcCCCccccc
Q 016018 122 RVVLANPAI----REFRHLREH---CYHSFSYWMGCVGFGYDVKSNDYKVVRILCISDGSGLCHLKVEVYTLSADCWREL 194 (396)
Q Consensus 122 ~~~V~NP~T----~~~~~LP~~---~~~~~~~~~~~~~~g~d~~~~~yKVv~~~~~~~~~~~~~~~~evys~~t~~Wr~~ 194 (396)
..+++.|.| .+|..+++. |.++ .... .... +-+|+.+.............+++|+..+++|..+
T Consensus 138 g~y~~~~~~~~~~~~W~~~~~~~~~P~pR---~~h~--~~~~----~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~ 208 (470)
T PLN02193 138 GAYISLPSTPKLLGKWIKVEQKGEGPGLR---CSHG--IAQV----GNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSIS 208 (470)
T ss_pred EEEEecCCChhhhceEEEcccCCCCCCCc---cccE--EEEE----CCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeC
Confidence 467778766 788888653 2221 1111 1111 1246665543211111224689999999999976
Q ss_pred cccccccccccccccCCcceEEEcceEEEEEeccCCcccccCCCCccEEEEEeCCCceeeeecCCCCccccccccceEEE
Q 016018 195 VANIDFLGAGTRFLKDNFECQYFRGACYWILWDKSVGINYNNLVNGDFIFSFDMSDEVFQKLPVPNILNEIDQEFSKLTV 274 (396)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~~~~~~il~fD~~~e~~~~i~lP~~~~~~~~~~~~l~~ 274 (396)
+... +.|.. .......+.+++.||-+..... ......+.+||+.+.+|+.+..... .........++.
T Consensus 209 ~~~g---~~P~~-~~~~~~~v~~~~~lYvfGG~~~-------~~~~ndv~~yD~~t~~W~~l~~~~~-~P~~R~~h~~~~ 276 (470)
T PLN02193 209 PATG---DVPHL-SCLGVRMVSIGSTLYVFGGRDA-------SRQYNGFYSFDTTTNEWKLLTPVEE-GPTPRSFHSMAA 276 (470)
T ss_pred CCCC---CCCCC-cccceEEEEECCEEEEECCCCC-------CCCCccEEEEECCCCEEEEcCcCCC-CCCCccceEEEE
Confidence 5310 11111 1112246788999998765431 1123468899999999998742110 001111235667
Q ss_pred ecCeeEEEEeecCCCccEEEEEEEccCCCCCCeEEEEEecC--CCCcceeEEEEeCCcEEEEec-----CCeEEEEECCC
Q 016018 275 LNESLAFVLRDKYRKSYEIQIWVMDEFGANEIWKKLFTTEP--FCEIKRPLSFCERGELIMEDY-----YREACSYNLGT 347 (396)
Q Consensus 275 ~~g~L~~~~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~i~~--~~~~~~p~~~~~~g~il~~~~-----~~~l~~yd~~t 347 (396)
.+++|+++........ .-++|..+-. ..+|+..-.... .......+++ -+++|+++.. ...+..||+++
T Consensus 277 ~~~~iYv~GG~~~~~~-~~~~~~yd~~--t~~W~~~~~~~~~~~~R~~~~~~~-~~gkiyviGG~~g~~~~dv~~yD~~t 352 (470)
T PLN02193 277 DEENVYVFGGVSATAR-LKTLDSYNIV--DKKWFHCSTPGDSFSIRGGAGLEV-VQGKVWVVYGFNGCEVDDVHYYDPVQ 352 (470)
T ss_pred ECCEEEEECCCCCCCC-cceEEEEECC--CCEEEeCCCCCCCCCCCCCcEEEE-ECCcEEEEECCCCCccCceEEEECCC
Confidence 8999998887643211 1356666532 467987543211 1112223333 3567776632 14699999999
Q ss_pred CcEEEEee
Q 016018 348 KEIKKLPV 355 (396)
Q Consensus 348 ~~~~~~~~ 355 (396)
++|+.+..
T Consensus 353 ~~W~~~~~ 360 (470)
T PLN02193 353 DKWTQVET 360 (470)
T ss_pred CEEEEecc
Confidence 99998753
No 21
>PHA03098 kelch-like protein; Provisional
Probab=98.01 E-value=0.00043 Score=70.22 Aligned_cols=179 Identities=17% Similarity=0.163 Sum_probs=107.4
Q ss_pred EeeeCceEEEeEc------CCcEEEEcchhhhhccccccccCCCCcceeEEEEEEecCCCCeEEEEEEEEeCCCCcccce
Q 016018 107 VGHCHGIVCFALL------SGRVVLANPAIREFRHLREHCYHSFSYWMGCVGFGYDVKSNDYKVVRILCISDGSGLCHLK 180 (396)
Q Consensus 107 ~~sc~GLlc~~~~------~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~yKVv~~~~~~~~~~~~~~~ 180 (396)
+++.+|-|.+..+ .+.+.++||.|++|..+|+.+.+. ....+ ..++ =++..+++..... .....
T Consensus 338 ~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r---~~~~~-~~~~-----~~iYv~GG~~~~~-~~~~~ 407 (534)
T PHA03098 338 VTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPR---YNPCV-VNVN-----NLIYVIGGISKND-ELLKT 407 (534)
T ss_pred EEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCC---ccceE-EEEC-----CEEEEECCcCCCC-cccce
Confidence 4455776644332 136889999999999998876542 11111 1111 2566665432211 12367
Q ss_pred EEEEEcCCCccccccccccccccccccccCCcceEEEcceEEEEEeccCCcccccCCCCccEEEEEeCCCceeeeec-CC
Q 016018 181 VEVYTLSADCWRELVANIDFLGAGTRFLKDNFECQYFRGACYWILWDKSVGINYNNLVNGDFIFSFDMSDEVFQKLP-VP 259 (396)
Q Consensus 181 ~evys~~t~~Wr~~~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~~~~~~il~fD~~~e~~~~i~-lP 259 (396)
+++|+..+++|+.++. . +.+ ......+.++|.+|-+...... ........+.+||+++++|+.++ +|
T Consensus 408 v~~yd~~t~~W~~~~~----~--p~~--r~~~~~~~~~~~iyv~GG~~~~----~~~~~~~~v~~yd~~~~~W~~~~~~~ 475 (534)
T PHA03098 408 VECFSLNTNKWSKGSP----L--PIS--HYGGCAIYHDGKIYVIGGISYI----DNIKVYNIVESYNPVTNKWTELSSLN 475 (534)
T ss_pred EEEEeCCCCeeeecCC----C--Ccc--ccCceEEEECCEEEEECCccCC----CCCcccceEEEecCCCCceeeCCCCC
Confidence 8999999999998874 1 122 1122478889999987643210 00011235999999999999874 33
Q ss_pred CCccccccccceEEEecCeeEEEEeecCCCccEEEEEEEccCCCCCCeEEEEEecC
Q 016018 260 NILNEIDQEFSKLTVLNESLAFVLRDKYRKSYEIQIWVMDEFGANEIWKKLFTTEP 315 (396)
Q Consensus 260 ~~~~~~~~~~~~l~~~~g~L~~~~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~i~~ 315 (396)
.. .....++..+|+|+++........ .-.||..+-. ...|+.....+.
T Consensus 476 ~~-----r~~~~~~~~~~~iyv~GG~~~~~~-~~~v~~yd~~--~~~W~~~~~~p~ 523 (534)
T PHA03098 476 FP-----RINASLCIFNNKIYVVGGDKYEYY-INEIEVYDDK--TNTWTLFCKFPK 523 (534)
T ss_pred cc-----cccceEEEECCEEEEEcCCcCCcc-cceeEEEeCC--CCEEEecCCCcc
Confidence 21 112356778999999887643221 1356777642 567988776543
No 22
>PHA02790 Kelch-like protein; Provisional
Probab=97.74 E-value=0.0014 Score=65.53 Aligned_cols=143 Identities=8% Similarity=0.014 Sum_probs=94.9
Q ss_pred ceEEEEEcCCCccccccccccccccccccccCCcceEEEcceEEEEEeccCCcccccCCCCccEEEEEeCCCceeeee-c
Q 016018 179 LKVEVYTLSADCWRELVANIDFLGAGTRFLKDNFECQYFRGACYWILWDKSVGINYNNLVNGDFIFSFDMSDEVFQKL-P 257 (396)
Q Consensus 179 ~~~evys~~t~~Wr~~~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~~~~~~il~fD~~~e~~~~i-~ 257 (396)
..++.|+..+++|..++. .+ .+ ......+.++|.+|-+.... ....+-.||..+++|..+ +
T Consensus 287 ~~v~~Ydp~~~~W~~~~~----m~--~~--r~~~~~v~~~~~iYviGG~~----------~~~sve~ydp~~n~W~~~~~ 348 (480)
T PHA02790 287 NNAIAVNYISNNWIPIPP----MN--SP--RLYASGVPANNKLYVVGGLP----------NPTSVERWFHGDAAWVNMPS 348 (480)
T ss_pred CeEEEEECCCCEEEECCC----CC--ch--hhcceEEEECCEEEEECCcC----------CCCceEEEECCCCeEEECCC
Confidence 578899999999999885 21 11 11124788999999987543 113578999999999887 4
Q ss_pred CCCCccccccccceEEEecCeeEEEEeecCC-CccEEEEEEEccCCCCCCeEEEEEecCCCCcceeEEEEeCCcEEEEec
Q 016018 258 VPNILNEIDQEFSKLTVLNESLAFVLRDKYR-KSYEIQIWVMDEFGANEIWKKLFTTEPFCEIKRPLSFCERGELIMEDY 336 (396)
Q Consensus 258 lP~~~~~~~~~~~~l~~~~g~L~~~~~~~~~-~~~~~~IW~l~~~~~~~~W~~~~~i~~~~~~~~p~~~~~~g~il~~~~ 336 (396)
+|.. . .....++++|+|++++..... .. ++.+-.+ .+.|+..-.++... . ...++.-+|.|++.+
T Consensus 349 l~~~---r--~~~~~~~~~g~IYviGG~~~~~~~--ve~ydp~----~~~W~~~~~m~~~r-~-~~~~~~~~~~IYv~G- 414 (480)
T PHA02790 349 LLKP---R--CNPAVASINNVIYVIGGHSETDTT--TEYLLPN----HDQWQFGPSTYYPH-Y-KSCALVFGRRLFLVG- 414 (480)
T ss_pred CCCC---C--cccEEEEECCEEEEecCcCCCCcc--EEEEeCC----CCEEEeCCCCCCcc-c-cceEEEECCEEEEEC-
Confidence 4431 1 124578899999999886432 23 5555322 46799865443321 1 123334567888875
Q ss_pred CCeEEEEECCCCcEEEEe
Q 016018 337 YREACSYNLGTKEIKKLP 354 (396)
Q Consensus 337 ~~~l~~yd~~t~~~~~~~ 354 (396)
+..-.||+++++|+.+.
T Consensus 415 -G~~e~ydp~~~~W~~~~ 431 (480)
T PHA02790 415 -RNAEFYCESSNTWTLID 431 (480)
T ss_pred -CceEEecCCCCcEeEcC
Confidence 35678999999999765
No 23
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=97.69 E-value=0.011 Score=57.17 Aligned_cols=160 Identities=11% Similarity=0.021 Sum_probs=87.0
Q ss_pred ceEEEEEcCCCccccccccccccccccccccCCcceEEEcceEEEEEeccCCcccccCCCCccEEEEEeCCCceeeee-c
Q 016018 179 LKVEVYTLSADCWRELVANIDFLGAGTRFLKDNFECQYFRGACYWILWDKSVGINYNNLVNGDFIFSFDMSDEVFQKL-P 257 (396)
Q Consensus 179 ~~~evys~~t~~Wr~~~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~~~~~~il~fD~~~e~~~~i-~ 257 (396)
..+++|+..++.|+.++. ++..- ......+.++|.||.+...... ...........+|.++.+|..+ +
T Consensus 189 ~~v~~YD~~t~~W~~~~~------~p~~~-~~~~a~v~~~~~iYv~GG~~~~----~~~~~~~~~~~~~~~~~~W~~~~~ 257 (376)
T PRK14131 189 KEVLSYDPSTNQWKNAGE------SPFLG-TAGSAVVIKGNKLWLINGEIKP----GLRTDAVKQGKFTGNNLKWQKLPD 257 (376)
T ss_pred ceEEEEECCCCeeeECCc------CCCCC-CCcceEEEECCEEEEEeeeECC----CcCChhheEEEecCCCcceeecCC
Confidence 469999999999998874 11111 1122467789999998754310 0012233456778899999877 4
Q ss_pred CCCCcccc-ccc--cceEEEecCeeEEEEeecCCC--------c-----cEEEEEEEccCC-CCCCeEEEEEecCCCCcc
Q 016018 258 VPNILNEI-DQE--FSKLTVLNESLAFVLRDKYRK--------S-----YEIQIWVMDEFG-ANEIWKKLFTTEPFCEIK 320 (396)
Q Consensus 258 lP~~~~~~-~~~--~~~l~~~~g~L~~~~~~~~~~--------~-----~~~~IW~l~~~~-~~~~W~~~~~i~~~~~~~ 320 (396)
+|...... ... ....+..+|+|+++....... . ..-.+|..+-|. ....|++.-.++....
T Consensus 258 ~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~r~-- 335 (376)
T PRK14131 258 LPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQGLA-- 335 (376)
T ss_pred CCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCCCcc--
Confidence 55421100 101 112467899999888753211 0 000123322221 1457987765543222
Q ss_pred eeEEEEeCCcEEEEecC-------CeEEEEECCCCcEE
Q 016018 321 RPLSFCERGELIMEDYY-------REACSYNLGTKEIK 351 (396)
Q Consensus 321 ~p~~~~~~g~il~~~~~-------~~l~~yd~~t~~~~ 351 (396)
...++.-+++|+++... ..+..|+.+++++.
T Consensus 336 ~~~av~~~~~iyv~GG~~~~~~~~~~v~~~~~~~~~~~ 373 (376)
T PRK14131 336 YGVSVSWNNGVLLIGGETAGGKAVSDVTLLSWDGKKLT 373 (376)
T ss_pred ceEEEEeCCEEEEEcCCCCCCcEeeeEEEEEEcCCEEE
Confidence 12344456778877532 14667777766553
No 24
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=97.55 E-value=0.012 Score=55.44 Aligned_cols=140 Identities=11% Similarity=-0.003 Sum_probs=81.4
Q ss_pred CcEEEEcchhhhh----ccccccccCCCCcceeEEEEEEecCCCCeEEEEEEEEeCCCCcccceEEEEEcCCCccccccc
Q 016018 121 GRVVLANPAIREF----RHLREHCYHSFSYWMGCVGFGYDVKSNDYKVVRILCISDGSGLCHLKVEVYTLSADCWRELVA 196 (396)
Q Consensus 121 ~~~~V~NP~T~~~----~~LP~~~~~~~~~~~~~~~~g~d~~~~~yKVv~~~~~~~~~~~~~~~~evys~~t~~Wr~~~~ 196 (396)
+.++.+|+.+++| ..+|+.+.+. ....+ ..++ =||..++..... .....+++|+..++.|..++.
T Consensus 88 ~~v~~~d~~~~~w~~~~~~~~~lp~~~---~~~~~-~~~~-----~~iYv~GG~~~~--~~~~~v~~yd~~~~~W~~~~~ 156 (323)
T TIGR03548 88 SSVYRITLDESKEELICETIGNLPFTF---ENGSA-CYKD-----GTLYVGGGNRNG--KPSNKSYLFNLETQEWFELPD 156 (323)
T ss_pred eeEEEEEEcCCceeeeeeEcCCCCcCc---cCceE-EEEC-----CEEEEEeCcCCC--ccCceEEEEcCCCCCeeECCC
Confidence 3788899999987 6677765442 11111 1122 256666543221 123678999999999999874
Q ss_pred cccccccccccccCCcceEEEcceEEEEEeccCCcccccCCCCccEEEEEeCCCceeeeecC-CCCcccc-ccccceEEE
Q 016018 197 NIDFLGAGTRFLKDNFECQYFRGACYWILWDKSVGINYNNLVNGDFIFSFDMSDEVFQKLPV-PNILNEI-DQEFSKLTV 274 (396)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~~~~~~il~fD~~~e~~~~i~l-P~~~~~~-~~~~~~l~~ 274 (396)
++... ......+.++|.+|-+..... .....+.+||+++++|+.++. +...... ......++.
T Consensus 157 ----~p~~~---r~~~~~~~~~~~iYv~GG~~~--------~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~ 221 (323)
T TIGR03548 157 ----FPGEP---RVQPVCVKLQNELYVFGGGSN--------IAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKI 221 (323)
T ss_pred ----CCCCC---CCcceEEEECCEEEEEcCCCC--------ccccceEEEecCCCeeEECCCCCCCCCceeccceeEEEE
Confidence 11111 122235688999998765431 112346899999999998743 2100000 111233455
Q ss_pred ecCeeEEEEeec
Q 016018 275 LNESLAFVLRDK 286 (396)
Q Consensus 275 ~~g~L~~~~~~~ 286 (396)
.+++|.++....
T Consensus 222 ~~~~iyv~GG~~ 233 (323)
T TIGR03548 222 NESLLLCIGGFN 233 (323)
T ss_pred CCCEEEEECCcC
Confidence 678888887654
No 25
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=7.3e-05 Score=67.27 Aligned_cols=41 Identities=27% Similarity=0.450 Sum_probs=38.4
Q ss_pred CCCCcHHHHHHHhhcCCccccccccccchhhhhhhCChHHH
Q 016018 4 FSDLPEELVFKILVLLPVDSLLCSKCVQKSWYSLITNSRFV 44 (396)
Q Consensus 4 ~~~LP~Dll~eIL~rLP~~sl~r~r~VcK~W~~li~~~~F~ 44 (396)
|..|||||++.||+.||.|+|++...|||+|+.+-++.+..
T Consensus 98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW 138 (419)
T KOG2120|consen 98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLW 138 (419)
T ss_pred cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccce
Confidence 78999999999999999999999999999999999887654
No 26
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=97.33 E-value=0.0034 Score=55.57 Aligned_cols=214 Identities=10% Similarity=0.073 Sum_probs=120.0
Q ss_pred cEEEEcchhhhhccccccccC-CCCcce-----eEEE---EEEecCCCCeEEEEEEEEeCCCCcccceEEEEEcCCCccc
Q 016018 122 RVVLANPAIREFRHLREHCYH-SFSYWM-----GCVG---FGYDVKSNDYKVVRILCISDGSGLCHLKVEVYTLSADCWR 192 (396)
Q Consensus 122 ~~~V~NP~T~~~~~LP~~~~~-~~~~~~-----~~~~---~g~d~~~~~yKVv~~~~~~~~~~~~~~~~evys~~t~~Wr 192 (396)
.+.|.|-.+-+|.++|+.-.. ...... ..+| ..|+ =|+..-+...+.+ .....+.-|+.+++.|+
T Consensus 45 DVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~-----d~~yvWGGRND~e-gaCN~Ly~fDp~t~~W~ 118 (392)
T KOG4693|consen 45 DVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQ-----DKAYVWGGRNDDE-GACNLLYEFDPETNVWK 118 (392)
T ss_pred eeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEc-----ceEEEEcCccCcc-cccceeeeecccccccc
Confidence 688899999999999873110 000000 0111 1111 1222222111212 23467778999999999
Q ss_pred cccccccccccccccccCCcceEEEcceEEEEEeccCCcccccCCCCccEEEEEeCCCceeeeec---CCCCcccccccc
Q 016018 193 ELVANIDFLGAGTRFLKDNFECQYFRGACYWILWDKSVGINYNNLVNGDFIFSFDMSDEVFQKLP---VPNILNEIDQEF 269 (396)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~~~~~~il~fD~~~e~~~~i~---lP~~~~~~~~~~ 269 (396)
..+- .-..+-.....++...+..+|-+..-.. +.+.....+-+||+.+.+|+++. .|+..+ .+
T Consensus 119 ~p~v-----~G~vPgaRDGHsAcV~gn~MyiFGGye~-----~a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwR----DF 184 (392)
T KOG4693|consen 119 KPEV-----EGFVPGARDGHSACVWGNQMYIFGGYEE-----DAQRFSQDTHVLDFATMTWREMHTKGDPPRWR----DF 184 (392)
T ss_pred ccce-----eeecCCccCCceeeEECcEEEEecChHH-----HHHhhhccceeEeccceeeeehhccCCCchhh----hh
Confidence 8662 1111112334457777778887653321 12233457899999999999873 455322 23
Q ss_pred ceEEEecCeeEEEEeecC--------CCccEEEEEEEccCCCCCCeEEEEEecCCC-CcceeEEEEeCCcEEEEec----
Q 016018 270 SKLTVLNESLAFVLRDKY--------RKSYEIQIWVMDEFGANEIWKKLFTTEPFC-EIKRPLSFCERGELIMEDY---- 336 (396)
Q Consensus 270 ~~l~~~~g~L~~~~~~~~--------~~~~~~~IW~l~~~~~~~~W~~~~~i~~~~-~~~~p~~~~~~g~il~~~~---- 336 (396)
..-++.+|..+++....+ .+...-+|=.|+-. .+-|.....-...+ +-.+.-.+..+|++++...
T Consensus 185 H~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~--T~aW~r~p~~~~~P~GRRSHS~fvYng~~Y~FGGYng~ 262 (392)
T KOG4693|consen 185 HTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLA--TGAWTRTPENTMKPGGRRSHSTFVYNGKMYMFGGYNGT 262 (392)
T ss_pred hhhhhccceEEEeccccccCCCccchhhhhcceeEEEecc--ccccccCCCCCcCCCcccccceEEEcceEEEecccchh
Confidence 445667788777776543 12222345555532 45687763322222 2222334556788877643
Q ss_pred ----CCeEEEEECCCCcEEEEeecC
Q 016018 337 ----YREACSYNLGTKEIKKLPVLP 357 (396)
Q Consensus 337 ----~~~l~~yd~~t~~~~~~~~~~ 357 (396)
.+.|+++|++|..|..|...|
T Consensus 263 ln~HfndLy~FdP~t~~W~~I~~~G 287 (392)
T KOG4693|consen 263 LNVHFNDLYCFDPKTSMWSVISVRG 287 (392)
T ss_pred hhhhhcceeecccccchheeeeccC
Confidence 236999999999999998877
No 27
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=96.80 E-value=0.048 Score=51.96 Aligned_cols=149 Identities=14% Similarity=0.142 Sum_probs=82.8
Q ss_pred CcEEEEcchhhhhccccccccCCCCcceeEEEEEEecCCCCeEEEEEEEEeCCCCcccceEEEEEc--CCCccccccccc
Q 016018 121 GRVVLANPAIREFRHLREHCYHSFSYWMGCVGFGYDVKSNDYKVVRILCISDGSGLCHLKVEVYTL--SADCWRELVANI 198 (396)
Q Consensus 121 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~yKVv~~~~~~~~~~~~~~~~evys~--~t~~Wr~~~~~~ 198 (396)
+.+.++||.|.+|..+++.+... ..... ...++ =|+..++..... ......+++|+. +++.|..+..
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~~--r~~~~-~~~~~-----~~iyv~GG~~~~-~~~~~~~~~y~~~~~~~~W~~~~~-- 236 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFLG--TAGSA-IVHKG-----NKLLLINGEIKP-GLRTAEVKQYLFTGGKLEWNKLPP-- 236 (346)
T ss_pred ceEEEEECCCCceeECccCCCCc--CCCce-EEEEC-----CEEEEEeeeeCC-CccchheEEEEecCCCceeeecCC--
Confidence 46889999999999998765310 11111 11122 266666643221 111234555654 6679998874
Q ss_pred cccccccccccC---CcceEEEcceEEEEEeccCCccc--c--------cCCCCccEEEEEeCCCceeeee-cCCCCccc
Q 016018 199 DFLGAGTRFLKD---NFECQYFRGACYWILWDKSVGIN--Y--------NNLVNGDFIFSFDMSDEVFQKL-PVPNILNE 264 (396)
Q Consensus 199 ~~~~~~~~~~~~---~~~~v~~~G~lywl~~~~~~~~~--~--------~~~~~~~~il~fD~~~e~~~~i-~lP~~~~~ 264 (396)
.+.+...... ....+.++|.||.+......... + ........+-.||+++++|+.+ ++|..
T Consensus 237 --m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~--- 311 (346)
T TIGR03547 237 --LPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKLPQG--- 311 (346)
T ss_pred --CCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCCCCC---
Confidence 2211110011 11256789999988654210000 0 0000113577899999999877 55652
Q ss_pred cccccceEEEecCeeEEEEeecC
Q 016018 265 IDQEFSKLTVLNESLAFVLRDKY 287 (396)
Q Consensus 265 ~~~~~~~l~~~~g~L~~~~~~~~ 287 (396)
. .....+.++|+|+++.....
T Consensus 312 ~--~~~~~~~~~~~iyv~GG~~~ 332 (346)
T TIGR03547 312 L--AYGVSVSWNNGVLLIGGENS 332 (346)
T ss_pred c--eeeEEEEcCCEEEEEeccCC
Confidence 1 12346789999999998653
No 28
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=96.51 E-value=0.34 Score=48.44 Aligned_cols=164 Identities=15% Similarity=0.083 Sum_probs=100.9
Q ss_pred eEEEEEcCCCccccccccccccccccccccCCcceEEEcceEEEEEeccCCcccccCCCCccEEEEEeCCCceeeeecCC
Q 016018 180 KVEVYTLSADCWRELVANIDFLGAGTRFLKDNFECQYFRGACYWILWDKSVGINYNNLVNGDFIFSFDMSDEVFQKLPVP 259 (396)
Q Consensus 180 ~~evys~~t~~Wr~~~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~~~~~~il~fD~~~e~~~~i~lP 259 (396)
.+.+++..+..|...... .. .+....+...+.++..||-+..... .......|.+||+.+.+|..+..-
T Consensus 89 dl~~~d~~~~~w~~~~~~----g~-~p~~r~g~~~~~~~~~l~lfGG~~~------~~~~~~~l~~~d~~t~~W~~l~~~ 157 (482)
T KOG0379|consen 89 DLYVLDLESQLWTKPAAT----GD-EPSPRYGHSLSAVGDKLYLFGGTDK------KYRNLNELHSLDLSTRTWSLLSPT 157 (482)
T ss_pred eeEEeecCCccccccccc----CC-CCCcccceeEEEECCeEEEEccccC------CCCChhheEeccCCCCcEEEecCc
Confidence 578888888888876642 11 1122233357788888887765441 011234799999999999876321
Q ss_pred CCccccccccceEEEecCeeEEEEeecCCCccEEEEEEEccCCCCCCeEEEEEecCCC--CcceeEEEEeCCcEEEEecC
Q 016018 260 NILNEIDQEFSKLTVLNESLAFVLRDKYRKSYEIQIWVMDEFGANEIWKKLFTTEPFC--EIKRPLSFCERGELIMEDYY 337 (396)
Q Consensus 260 ~~~~~~~~~~~~l~~~~g~L~~~~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~i~~~~--~~~~p~~~~~~g~il~~~~~ 337 (396)
.. .........++..+.+|.+..........--++|+++-. ...|.+..+.+..+ ...+.+++.++.-+++...+
T Consensus 158 ~~-~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~--~~~W~~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~ 234 (482)
T KOG0379|consen 158 GD-PPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLE--TSTWSELDTQGEAPSPRYGHAMVVVGNKLLVFGGGD 234 (482)
T ss_pred CC-CCCCcccceEEEECCEEEEECCccCcccceeeeeeeccc--cccceecccCCCCCCCCCCceEEEECCeEEEEeccc
Confidence 10 001112345677778888877765433233799999953 45699998877532 34555666555444443322
Q ss_pred ------CeEEEEECCCCcEEEEeecC
Q 016018 338 ------REACSYNLGTKEIKKLPVLP 357 (396)
Q Consensus 338 ------~~l~~yd~~t~~~~~~~~~~ 357 (396)
..+..+|+.+.+|+.+...+
T Consensus 235 ~~~~~l~D~~~ldl~~~~W~~~~~~g 260 (482)
T KOG0379|consen 235 DGDVYLNDVHILDLSTWEWKLLPTGG 260 (482)
T ss_pred cCCceecceEeeecccceeeeccccC
Confidence 25899999998888554333
No 29
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=96.42 E-value=0.1 Score=46.44 Aligned_cols=144 Identities=14% Similarity=0.186 Sum_probs=89.0
Q ss_pred ceEEEEEcCCCccccccccccccccccccccCCcceEEEcceEEEEEeccC--CcccccCCCCccEEEEEeCCCceeeee
Q 016018 179 LKVEVYTLSADCWRELVANIDFLGAGTRFLKDNFECQYFRGACYWILWDKS--VGINYNNLVNGDFIFSFDMSDEVFQKL 256 (396)
Q Consensus 179 ~~~evys~~t~~Wr~~~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~--~~~~~~~~~~~~~il~fD~~~e~~~~i 256 (396)
...++++..|-.||.+.+ ...|+.|.... .++..+|.+|-+..+.. ..+......-...|++||+.++.|..-
T Consensus 157 ~d~h~ld~~TmtWr~~~T----kg~PprwRDFH-~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~ 231 (392)
T KOG4693|consen 157 QDTHVLDFATMTWREMHT----KGDPPRWRDFH-TASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRT 231 (392)
T ss_pred ccceeEeccceeeeehhc----cCCCchhhhhh-hhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccC
Confidence 567778888889999887 44556665554 37888899998875542 222223333356899999999999764
Q ss_pred c----CCCCccccccccceEEEecCeeEEEEeecCC-CccEEEEEEEccCCCCCCeEEEEEecCCCC-cceeEEEEeCCc
Q 016018 257 P----VPNILNEIDQEFSKLTVLNESLAFVLRDKYR-KSYEIQIWVMDEFGANEIWKKLFTTEPFCE-IKRPLSFCERGE 330 (396)
Q Consensus 257 ~----lP~~~~~~~~~~~~l~~~~g~L~~~~~~~~~-~~~~~~IW~l~~~~~~~~W~~~~~i~~~~~-~~~p~~~~~~g~ 330 (396)
+ +|.. .......+.+|+++++..+... +..--++|..+-. ...|++...=...+. -.+-.++.-+++
T Consensus 232 p~~~~~P~G-----RRSHS~fvYng~~Y~FGGYng~ln~HfndLy~FdP~--t~~W~~I~~~Gk~P~aRRRqC~~v~g~k 304 (392)
T KOG4693|consen 232 PENTMKPGG-----RRSHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDPK--TSMWSVISVRGKYPSARRRQCSVVSGGK 304 (392)
T ss_pred CCCCcCCCc-----ccccceEEEcceEEEecccchhhhhhhcceeecccc--cchheeeeccCCCCCcccceeEEEECCE
Confidence 2 2321 1223567899999998887531 1111578888863 467987654332211 123344445555
Q ss_pred EEEE
Q 016018 331 LIME 334 (396)
Q Consensus 331 il~~ 334 (396)
+++.
T Consensus 305 v~LF 308 (392)
T KOG4693|consen 305 VYLF 308 (392)
T ss_pred EEEe
Confidence 5554
No 30
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=96.18 E-value=0.18 Score=47.71 Aligned_cols=218 Identities=7% Similarity=0.086 Sum_probs=114.9
Q ss_pred CcEEEEcchhhhhccc--cccccCCCCcceeEEEEEEecCCCCeEEEEEEE--EeCC--CCcc-cceEEEEEcCCCcccc
Q 016018 121 GRVVLANPAIREFRHL--REHCYHSFSYWMGCVGFGYDVKSNDYKVVRILC--ISDG--SGLC-HLKVEVYTLSADCWRE 193 (396)
Q Consensus 121 ~~~~V~NP~T~~~~~L--P~~~~~~~~~~~~~~~~g~d~~~~~yKVv~~~~--~~~~--~~~~-~~~~evys~~t~~Wr~ 193 (396)
+.+|++|--+.+|+.+ |.+|.|+ . .......|+. ++.++. +... .... ..-+=+|++.++.|.+
T Consensus 98 ndLy~Yn~k~~eWkk~~spn~P~pR---s--shq~va~~s~----~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweq 168 (521)
T KOG1230|consen 98 NDLYSYNTKKNEWKKVVSPNAPPPR---S--SHQAVAVPSN----ILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQ 168 (521)
T ss_pred eeeeEEeccccceeEeccCCCcCCC---c--cceeEEeccC----eEEEeccccCCcchhhhhhhhheeeeeeccchhee
Confidence 4789999999999987 4444331 1 1222223322 223321 1111 1111 1345578899999999
Q ss_pred ccccccccccccccccCCcceEEEcceEEEEEe-ccCCcccccCCCCccEEEEEeCCCceeeeecCCCCccccccccceE
Q 016018 194 LVANIDFLGAGTRFLKDNFECQYFRGACYWILW-DKSVGINYNNLVNGDFIFSFDMSDEVFQKLPVPNILNEIDQEFSKL 272 (396)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~-~~~~~~~~~~~~~~~~il~fD~~~e~~~~i~lP~~~~~~~~~~~~l 272 (396)
+.. .-.+.-... .+.|.....|.-+.. ... ..+..-..-|.+||+++=+|+.+..+.. ......-+++
T Consensus 169 l~~-----~g~PS~RSG-HRMvawK~~lilFGGFhd~----nr~y~YyNDvy~FdLdtykW~Klepsga-~PtpRSGcq~ 237 (521)
T KOG1230|consen 169 LEF-----GGGPSPRSG-HRMVAWKRQLILFGGFHDS----NRDYIYYNDVYAFDLDTYKWSKLEPSGA-GPTPRSGCQF 237 (521)
T ss_pred ecc-----CCCCCCCcc-ceeEEeeeeEEEEcceecC----CCceEEeeeeEEEeccceeeeeccCCCC-CCCCCCcceE
Confidence 874 111111111 123333322221110 000 0001112368999999999999865431 1111112344
Q ss_pred EEe-cCeeEEEEeecC--------CCccEEEEEEEccC---CCCCCeEEEEEecCC--CCcceeEEEEeCCcEEEEe---
Q 016018 273 TVL-NESLAFVLRDKY--------RKSYEIQIWVMDEF---GANEIWKKLFTTEPF--CEIKRPLSFCERGELIMED--- 335 (396)
Q Consensus 273 ~~~-~g~L~~~~~~~~--------~~~~~~~IW~l~~~---~~~~~W~~~~~i~~~--~~~~~p~~~~~~g~il~~~--- 335 (396)
.+. .|.+.|...+.. ..+..-++|.|+-. +++-.|+++..+... +.....+++++++.-|+..
T Consensus 238 ~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~FGGV~ 317 (521)
T KOG1230|consen 238 SVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALFFGGVC 317 (521)
T ss_pred EecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEecCCceEEeccee
Confidence 444 888888776531 12234689999943 224568887766542 3333456677766544331
Q ss_pred ------------cCCeEEEEECCCCcEEEEeecCc
Q 016018 336 ------------YYREACSYNLGTKEIKKLPVLPC 358 (396)
Q Consensus 336 ------------~~~~l~~yd~~t~~~~~~~~~~~ 358 (396)
..+.|+.||+..++|..-.+.+.
T Consensus 318 D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~qlq~~ 352 (521)
T KOG1230|consen 318 DLEEEEESLSGEFFNDLYFFDLTRNRWSEGQLQGK 352 (521)
T ss_pred cccccchhhhhhhhhhhhheecccchhhHhhhccC
Confidence 12369999999999987665553
No 31
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=96.16 E-value=0.0023 Score=58.06 Aligned_cols=44 Identities=20% Similarity=0.297 Sum_probs=39.0
Q ss_pred CCCCcHHHHHHHhhcCC-----ccccccccccchhhhhhhCChHHHHHH
Q 016018 4 FSDLPEELVFKILVLLP-----VDSLLCSKCVQKSWYSLITNSRFVVKH 47 (396)
Q Consensus 4 ~~~LP~Dll~eIL~rLP-----~~sl~r~r~VcK~W~~li~~~~F~~~~ 47 (396)
+..||+||+.+||.+.= ..+|-++.+|||.|+-...+|+|.+.-
T Consensus 107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~a 155 (366)
T KOG2997|consen 107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLA 155 (366)
T ss_pred hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHH
Confidence 45799999999998764 589999999999999999999998754
No 32
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=95.97 E-value=0.0037 Score=57.19 Aligned_cols=46 Identities=24% Similarity=0.390 Sum_probs=40.8
Q ss_pred CCCCc----HHHHHHHhhcCCccccccccccchhhhhhhCChHHHHHHHh
Q 016018 4 FSDLP----EELVFKILVLLPVDSLLCSKCVQKSWYSLITNSRFVVKHLR 49 (396)
Q Consensus 4 ~~~LP----~Dll~eIL~rLP~~sl~r~r~VcK~W~~li~~~~F~~~~~~ 49 (396)
+..|| +++.+.||+.|...+|..++.|||+|+.+++++-..++-..
T Consensus 75 i~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WKkLie 124 (499)
T KOG0281|consen 75 ITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWKKLIE 124 (499)
T ss_pred HHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHHHHHH
Confidence 34689 99999999999999999999999999999999987776543
No 33
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=95.85 E-value=0.43 Score=47.71 Aligned_cols=182 Identities=15% Similarity=0.098 Sum_probs=100.9
Q ss_pred CceEEEeEcC------CcEEEEcchhhhhcccccccc-CCCCcceeEEEEEEecCCCCeEEEEEEEEeCCCCcccceEEE
Q 016018 111 HGIVCFALLS------GRVVLANPAIREFRHLREHCY-HSFSYWMGCVGFGYDVKSNDYKVVRILCISDGSGLCHLKVEV 183 (396)
Q Consensus 111 ~GLlc~~~~~------~~~~V~NP~T~~~~~LP~~~~-~~~~~~~~~~~~g~d~~~~~yKVv~~~~~~~~~~~~~~~~ev 183 (396)
+.|+++.... ..+...|+.|++|..+.+... |.......++..| =||+.++......+ ....+.|
T Consensus 123 ~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g-------~~l~vfGG~~~~~~-~~ndl~i 194 (482)
T KOG0379|consen 123 DKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVG-------TKLVVFGGIGGTGD-SLNDLHI 194 (482)
T ss_pred CeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCcccceEEEEC-------CEEEEECCccCccc-ceeeeee
Confidence 4455554433 289999999999999865432 2111111222211 24555544322211 3478999
Q ss_pred EEcCCCccccccccccccccccccccCCcceEEEcceEEEEEeccCCcccccCCCCccEEEEEeCCCceeeeecCCCCcc
Q 016018 184 YTLSADCWRELVANIDFLGAGTRFLKDNFECQYFRGACYWILWDKSVGINYNNLVNGDFIFSFDMSDEVFQKLPVPNILN 263 (396)
Q Consensus 184 ys~~t~~Wr~~~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~~~~~~il~fD~~~e~~~~i~lP~~~~ 263 (396)
|+..+..|.++... . ..+...... ++.+-|.-+|+...+. .......-+..||+.+.+|..++ +....
T Consensus 195 ~d~~~~~W~~~~~~----g-~~P~pR~gH-~~~~~~~~~~v~gG~~-----~~~~~l~D~~~ldl~~~~W~~~~-~~g~~ 262 (482)
T KOG0379|consen 195 YDLETSTWSELDTQ----G-EAPSPRYGH-AMVVVGNKLLVFGGGD-----DGDVYLNDVHILDLSTWEWKLLP-TGGDL 262 (482)
T ss_pred eccccccceecccC----C-CCCCCCCCc-eEEEECCeEEEEeccc-----cCCceecceEeeecccceeeecc-ccCCC
Confidence 99999999998851 1 122223333 4444444444443331 01222347899999999998432 11000
Q ss_pred ccccccceEEEecCeeEEEEeecCCCc-cEEEEEEEccCCCCCCeEEEEEec
Q 016018 264 EIDQEFSKLTVLNESLAFVLRDKYRKS-YEIQIWVMDEFGANEIWKKLFTTE 314 (396)
Q Consensus 264 ~~~~~~~~l~~~~g~L~~~~~~~~~~~-~~~~IW~l~~~~~~~~W~~~~~i~ 314 (396)
........++..+..+.+++....... ..-++|.|+.. ...|++.....
T Consensus 263 p~~R~~h~~~~~~~~~~l~gG~~~~~~~~l~~~~~l~~~--~~~w~~~~~~~ 312 (482)
T KOG0379|consen 263 PSPRSGHSLTVSGDHLLLFGGGTDPKQEPLGDLYGLDLE--TLVWSKVESVG 312 (482)
T ss_pred CCCcceeeeEEECCEEEEEcCCccccccccccccccccc--ccceeeeeccc
Confidence 111122345667777777777654211 22688999864 57899987776
No 34
>PF07762 DUF1618: Protein of unknown function (DUF1618); InterPro: IPR011676 The proteins of this entry are mainly hypothetical proteins expressed by Oryza sativa.
Probab=94.29 E-value=0.36 Score=38.92 Aligned_cols=76 Identities=21% Similarity=0.375 Sum_probs=54.6
Q ss_pred cEEEEEeCCCc--eeeeecCCCCcccc---------ccccceEEEecCeeEEEEeecC------CCccEEEEEEEccC-C
Q 016018 241 DFIFSFDMSDE--VFQKLPVPNILNEI---------DQEFSKLTVLNESLAFVLRDKY------RKSYEIQIWVMDEF-G 302 (396)
Q Consensus 241 ~~il~fD~~~e--~~~~i~lP~~~~~~---------~~~~~~l~~~~g~L~~~~~~~~------~~~~~~~IW~l~~~-~ 302 (396)
.+|+.+|+-.+ .++-++||..+... ...+..++..+|+|-++..... .....+.+|+|... +
T Consensus 6 ~GIL~CD~~~~~p~l~~vpLP~~~~~~~~~~~~~~~~~~~R~v~v~~G~ikfV~i~~~~~~~~~~~~~~vt~Wtl~~~~~ 85 (131)
T PF07762_consen 6 RGILFCDVFDDSPVLRFVPLPPPCPPNRRDDRPRGSPESYRDVGVSGGKIKFVEIDGYEDDGPPSGGWTVTTWTLKDPEG 85 (131)
T ss_pred CCEEEEECCCCCccEEEEeCCCccccCcccccccCCchhCceEEecCCCEEEEEEecccCCCcccCCcEEEEEEeccCCC
Confidence 36899998876 66778888754211 1234567889999999988653 23455999999984 2
Q ss_pred CCCCeEEEEEecCC
Q 016018 303 ANEIWKKLFTTEPF 316 (396)
Q Consensus 303 ~~~~W~~~~~i~~~ 316 (396)
...+|++.+++...
T Consensus 86 ~~~~W~~d~~v~~~ 99 (131)
T PF07762_consen 86 SSWEWKKDCEVDLS 99 (131)
T ss_pred CCCCEEEeEEEEhh
Confidence 35789999998753
No 35
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=93.10 E-value=1.7 Score=41.43 Aligned_cols=168 Identities=12% Similarity=0.147 Sum_probs=94.6
Q ss_pred ceEEEEEcCCCccccccccccccccccccccCCcceEEEcceEEEEEeccCCcccccCC-CCccEEEEEeCCCceeeeec
Q 016018 179 LKVEVYTLSADCWRELVANIDFLGAGTRFLKDNFECQYFRGACYWILWDKSVGINYNNL-VNGDFIFSFDMSDEVFQKLP 257 (396)
Q Consensus 179 ~~~evys~~t~~Wr~~~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~-~~~~~il~fD~~~e~~~~i~ 257 (396)
-.+..|+..+++|+.+..+ ..|++ ..+..+|.+--..-|+....+.+.+ +.. ....-+-.||+.+.+|.++.
T Consensus 98 ndLy~Yn~k~~eWkk~~sp----n~P~p--Rsshq~va~~s~~l~~fGGEfaSPn-q~qF~HYkD~W~fd~~trkweql~ 170 (521)
T KOG1230|consen 98 NDLYSYNTKKNEWKKVVSP----NAPPP--RSSHQAVAVPSNILWLFGGEFASPN-QEQFHHYKDLWLFDLKTRKWEQLE 170 (521)
T ss_pred eeeeEEeccccceeEeccC----CCcCC--CccceeEEeccCeEEEeccccCCcc-hhhhhhhhheeeeeeccchheeec
Confidence 4567899999999998852 11122 1222355555225555544321111 011 11235789999999999998
Q ss_pred CCCCccccccccceEEEecCeeEEEEeecCCCc---cEEEEEEEccCCCCCCeEEEEEec--CCCCcceeEEEEeCCcEE
Q 016018 258 VPNILNEIDQEFSKLTVLNESLAFVLRDKYRKS---YEIQIWVMDEFGANEIWKKLFTTE--PFCEIKRPLSFCERGELI 332 (396)
Q Consensus 258 lP~~~~~~~~~~~~l~~~~g~L~~~~~~~~~~~---~~~~IW~l~~~~~~~~W~~~~~i~--~~~~~~~p~~~~~~g~il 332 (396)
++... ....-..++..+.+|.++...++... .-=++|+.+=. ...|++...=. +...-..-+.+..+|.|+
T Consensus 171 ~~g~P--S~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLd--tykW~Klepsga~PtpRSGcq~~vtpqg~i~ 246 (521)
T KOG1230|consen 171 FGGGP--SPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLD--TYKWSKLEPSGAGPTPRSGCQFSVTPQGGIV 246 (521)
T ss_pred cCCCC--CCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEecc--ceeeeeccCCCCCCCCCCcceEEecCCCcEE
Confidence 87632 22222468889999999888664321 11367777632 46799987522 111111224555567777
Q ss_pred EEec---------------CCeEEEEECCCC---cEEEEeecC
Q 016018 333 MEDY---------------YREACSYNLGTK---EIKKLPVLP 357 (396)
Q Consensus 333 ~~~~---------------~~~l~~yd~~t~---~~~~~~~~~ 357 (396)
+... ...++..+++++ +|++-.+.+
T Consensus 247 vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp 289 (521)
T KOG1230|consen 247 VYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKP 289 (521)
T ss_pred EEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccC
Confidence 6532 113677777772 355444443
No 36
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=92.16 E-value=5 Score=35.60 Aligned_cols=123 Identities=15% Similarity=0.245 Sum_probs=66.9
Q ss_pred EEcceEEEEEeccCCcccccCCCCccEEEEEeCCCceeeeecCCCCccccccc-cceEEEe--cC--eeEEEEee-cCCC
Q 016018 216 YFRGACYWILWDKSVGINYNNLVNGDFIFSFDMSDEVFQKLPVPNILNEIDQE-FSKLTVL--NE--SLAFVLRD-KYRK 289 (396)
Q Consensus 216 ~~~G~lywl~~~~~~~~~~~~~~~~~~il~fD~~~e~~~~i~lP~~~~~~~~~-~~~l~~~--~g--~L~~~~~~-~~~~ 289 (396)
.|||-+ ++... ..++..|..++++..+|.|+........ ...++-. .+ ++..+... ....
T Consensus 3 sCnGLl-c~~~~-------------~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~ 68 (230)
T TIGR01640 3 PCDGLI-CFSYG-------------KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRN 68 (230)
T ss_pred ccceEE-EEecC-------------CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCCC
Confidence 578888 44432 2699999999999999766521000100 1112211 11 22222221 1111
Q ss_pred ccEEEEEEEccCCCCCCeEEEEEecCCCCcceeEEEEeCCcEEEEecC-----C-eEEEEECCCCcEEE-EeecC
Q 016018 290 SYEIQIWVMDEFGANEIWKKLFTTEPFCEIKRPLSFCERGELIMEDYY-----R-EACSYNLGTKEIKK-LPVLP 357 (396)
Q Consensus 290 ~~~~~IW~l~~~~~~~~W~~~~~i~~~~~~~~p~~~~~~g~il~~~~~-----~-~l~~yd~~t~~~~~-~~~~~ 357 (396)
...++|..++. ++|............... ++.-+|.+...... . .++.||+++.+++. +..+.
T Consensus 69 ~~~~~Vys~~~----~~Wr~~~~~~~~~~~~~~-~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P~ 138 (230)
T TIGR01640 69 QSEHQVYTLGS----NSWRTIECSPPHHPLKSR-GVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPC 138 (230)
T ss_pred CccEEEEEeCC----CCccccccCCCCccccCC-eEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecCc
Confidence 12378888874 479987632211111222 55567777776431 1 69999999999995 66543
No 37
>PF13964 Kelch_6: Kelch motif
Probab=91.19 E-value=0.54 Score=30.57 Aligned_cols=39 Identities=13% Similarity=0.140 Sum_probs=30.1
Q ss_pred ceEEEcceEEEEEeccCCcccccCCCCccEEEEEeCCCceeeeec
Q 016018 213 ECQYFRGACYWILWDKSVGINYNNLVNGDFIFSFDMSDEVFQKLP 257 (396)
Q Consensus 213 ~~v~~~G~lywl~~~~~~~~~~~~~~~~~~il~fD~~~e~~~~i~ 257 (396)
+.|.++|.||-+..... .......+..||+++++|+.++
T Consensus 6 s~v~~~~~iyv~GG~~~------~~~~~~~v~~yd~~t~~W~~~~ 44 (50)
T PF13964_consen 6 SAVVVGGKIYVFGGYDN------SGKYSNDVERYDPETNTWEQLP 44 (50)
T ss_pred EEEEECCEEEEECCCCC------CCCccccEEEEcCCCCcEEECC
Confidence 48999999999876541 0233568999999999999884
No 38
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=90.70 E-value=7.6 Score=35.13 Aligned_cols=127 Identities=13% Similarity=0.193 Sum_probs=75.2
Q ss_pred cceEEEcceEEEEEeccCCcccccCCCCccEEEEEeCCCceee-eecCCCCccc-------cccccceEEEecCeeEEEE
Q 016018 212 FECQYFRGACYWILWDKSVGINYNNLVNGDFIFSFDMSDEVFQ-KLPVPNILNE-------IDQEFSKLTVLNESLAFVL 283 (396)
Q Consensus 212 ~~~v~~~G~lywl~~~~~~~~~~~~~~~~~~il~fD~~~e~~~-~i~lP~~~~~-------~~~~~~~l~~~~g~L~~~~ 283 (396)
...|..||.+|.-... ...|+.||+.+++-. ...||..... .......+++-+.-|-++.
T Consensus 72 tG~vVYngslYY~~~~------------s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIY 139 (250)
T PF02191_consen 72 TGHVVYNGSLYYNKYN------------SRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIY 139 (250)
T ss_pred CCeEEECCcEEEEecC------------CceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEE
Confidence 3488899999997653 358999999999988 7788874211 1122355666666676666
Q ss_pred eecCCCccEEEEEEEccC--CCCCCeEEEEEecCCCCcceeEEEEeCCcEEEEecC-----CeEEEEECCCCcEEEEeec
Q 016018 284 RDKYRKSYEIQIWVMDEF--GANEIWKKLFTTEPFCEIKRPLSFCERGELIMEDYY-----REACSYNLGTKEIKKLPVL 356 (396)
Q Consensus 284 ~~~~~~~~~~~IW~l~~~--~~~~~W~~~~~i~~~~~~~~p~~~~~~g~il~~~~~-----~~l~~yd~~t~~~~~~~~~ 356 (396)
...+.+ ..+.|=.|+.. ...+.|.-.+ .. +.... ++--+|.++.+... .-.+.||..+++-+.+.+.
T Consensus 140 at~~~~-g~ivvskld~~tL~v~~tw~T~~--~k-~~~~n--aFmvCGvLY~~~s~~~~~~~I~yafDt~t~~~~~~~i~ 213 (250)
T PF02191_consen 140 ATEDNN-GNIVVSKLDPETLSVEQTWNTSY--PK-RSAGN--AFMVCGVLYATDSYDTRDTEIFYAFDTYTGKEEDVSIP 213 (250)
T ss_pred ecCCCC-CcEEEEeeCcccCceEEEEEecc--Cc-hhhcc--eeeEeeEEEEEEECCCCCcEEEEEEECCCCceeceeee
Confidence 654433 12666666643 2233444211 10 11112 23345666666432 2468899999887766544
No 39
>smart00284 OLF Olfactomedin-like domains.
Probab=88.12 E-value=14 Score=33.33 Aligned_cols=126 Identities=17% Similarity=0.200 Sum_probs=74.7
Q ss_pred ceEEEcceEEEEEeccCCcccccCCCCccEEEEEeCCCceeee-ecCCCCc-cc------cccccceEEEecCeeEEEEe
Q 016018 213 ECQYFRGACYWILWDKSVGINYNNLVNGDFIFSFDMSDEVFQK-LPVPNIL-NE------IDQEFSKLTVLNESLAFVLR 284 (396)
Q Consensus 213 ~~v~~~G~lywl~~~~~~~~~~~~~~~~~~il~fD~~~e~~~~-i~lP~~~-~~------~~~~~~~l~~~~g~L~~~~~ 284 (396)
..|..||++|..... ...|+.||+.+++... -.||... .+ .......|++-+.-|-++-.
T Consensus 78 G~VVYngslYY~~~~------------s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYa 145 (255)
T smart00284 78 GVVVYNGSLYFNKFN------------SHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYA 145 (255)
T ss_pred cEEEECceEEEEecC------------CccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEe
Confidence 489999999995433 2479999999998863 3567421 11 12233667777777877766
Q ss_pred ecCCCccEEEEEEEccC--CCCCCeEEEEEecCCCCcceeEEEEeCCcEEEEec-----CCeEEEEECCCCcEEEEeec
Q 016018 285 DKYRKSYEIQIWVMDEF--GANEIWKKLFTTEPFCEIKRPLSFCERGELIMEDY-----YREACSYNLGTKEIKKLPVL 356 (396)
Q Consensus 285 ~~~~~~~~~~IW~l~~~--~~~~~W~~~~~i~~~~~~~~p~~~~~~g~il~~~~-----~~~l~~yd~~t~~~~~~~~~ 356 (396)
....+ ..|.|=.|+.. +..+.|.-.+.= +.... ++--+|.++.... ..-.+.||..|.+-+.+.+.
T Consensus 146 t~~~~-g~ivvSkLnp~tL~ve~tW~T~~~k---~sa~n--aFmvCGvLY~~~s~~~~~~~I~yayDt~t~~~~~~~i~ 218 (255)
T smart00284 146 TEQNA-GKIVISKLNPATLTIENTWITTYNK---RSASN--AFMICGILYVTRSLGSKGEKVFYAYDTNTGKEGHLDIP 218 (255)
T ss_pred ccCCC-CCEEEEeeCcccceEEEEEEcCCCc---ccccc--cEEEeeEEEEEccCCCCCcEEEEEEECCCCccceeeee
Confidence 64432 23788888753 223344432111 11111 2233466666642 23478899999886665543
No 40
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=87.82 E-value=1.7 Score=27.54 Aligned_cols=38 Identities=13% Similarity=0.079 Sum_probs=30.4
Q ss_pred ceEEEcceEEEEEeccCCcccccCCCCccEEEEEeCCCceeeee
Q 016018 213 ECQYFRGACYWILWDKSVGINYNNLVNGDFIFSFDMSDEVFQKL 256 (396)
Q Consensus 213 ~~v~~~G~lywl~~~~~~~~~~~~~~~~~~il~fD~~~e~~~~i 256 (396)
..+.++|.+|-+..... .......+..||+.+++|..+
T Consensus 6 ~~~~~~~~iyv~GG~~~------~~~~~~~v~~yd~~~~~W~~~ 43 (47)
T PF01344_consen 6 AAVVVGNKIYVIGGYDG------NNQPTNSVEVYDPETNTWEEL 43 (47)
T ss_dssp EEEEETTEEEEEEEBES------TSSBEEEEEEEETTTTEEEEE
T ss_pred EEEEECCEEEEEeeecc------cCceeeeEEEEeCCCCEEEEc
Confidence 48899999999876651 234456899999999999987
No 41
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=87.26 E-value=16 Score=34.74 Aligned_cols=135 Identities=12% Similarity=0.028 Sum_probs=72.4
Q ss_pred EEEeeeCceEEEeEcCCcEEEEcchhhhhccccccccCCCCcceeEEEEEEecCCCCeEEEEEEEEeCCCCcc---cceE
Q 016018 105 KLVGHCHGIVCFALLSGRVVLANPAIREFRHLREHCYHSFSYWMGCVGFGYDVKSNDYKVVRILCISDGSGLC---HLKV 181 (396)
Q Consensus 105 ~~~~sc~GLlc~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~yKVv~~~~~~~~~~~~---~~~~ 181 (396)
.+.+-.+.-|+.........|+++.|+....+|....+.. ....+.. .++ +..+.......... ...+
T Consensus 70 ~F~al~gskIv~~d~~~~t~vyDt~t~av~~~P~l~~pk~--~pisv~V-----G~~--LY~m~~~~~~~~~~~~~~~~F 140 (342)
T PF07893_consen 70 DFFALHGSKIVAVDQSGRTLVYDTDTRAVATGPRLHSPKR--CPISVSV-----GDK--LYAMDRSPFPEPAGRPDFPCF 140 (342)
T ss_pred EEEEecCCeEEEEcCCCCeEEEECCCCeEeccCCCCCCCc--ceEEEEe-----CCe--EEEeeccCccccccCccceeE
Confidence 3444444445444444589999999999999998755421 1111111 122 55554322111000 0145
Q ss_pred EEE--E--------cCCCcccccccccccccccccc-ccCCcceEEEcceEEEEEeccCCcccccCCCCccEEEEEeCCC
Q 016018 182 EVY--T--------LSADCWRELVANIDFLGAGTRF-LKDNFECQYFRGACYWILWDKSVGINYNNLVNGDFIFSFDMSD 250 (396)
Q Consensus 182 evy--s--------~~t~~Wr~~~~~~~~~~~~~~~-~~~~~~~v~~~G~lywl~~~~~~~~~~~~~~~~~~il~fD~~~ 250 (396)
|++ . ..+.+|+.++.+ +|....... .....-+|+ +|.--|+..... ...-.+||+++
T Consensus 141 E~l~~~~~~~~~~~~~~w~W~~LP~P-Pf~~~~~~~~~~i~sYavv-~g~~I~vS~~~~----------~~GTysfDt~~ 208 (342)
T PF07893_consen 141 EALVYRPPPDDPSPEESWSWRSLPPP-PFVRDRRYSDYRITSYAVV-DGRTIFVSVNGR----------RWGTYSFDTES 208 (342)
T ss_pred EEeccccccccccCCCcceEEcCCCC-CccccCCcccceEEEEEEe-cCCeEEEEecCC----------ceEEEEEEcCC
Confidence 555 3 123478887752 222111100 002222566 899888866540 13689999999
Q ss_pred ceeeee---cCCC
Q 016018 251 EVFQKL---PVPN 260 (396)
Q Consensus 251 e~~~~i---~lP~ 260 (396)
.+|+.. .||-
T Consensus 209 ~~W~~~GdW~LPF 221 (342)
T PF07893_consen 209 HEWRKHGDWMLPF 221 (342)
T ss_pred cceeeccceecCc
Confidence 999976 6776
No 42
>PF13964 Kelch_6: Kelch motif
Probab=86.41 E-value=1.1 Score=28.99 Aligned_cols=22 Identities=14% Similarity=0.108 Sum_probs=19.2
Q ss_pred CcEEEEcchhhhhccccccccC
Q 016018 121 GRVVLANPAIREFRHLREHCYH 142 (396)
Q Consensus 121 ~~~~V~NP~T~~~~~LP~~~~~ 142 (396)
+.+.++||.|++|.++|+.+.|
T Consensus 28 ~~v~~yd~~t~~W~~~~~mp~p 49 (50)
T PF13964_consen 28 NDVERYDPETNTWEQLPPMPTP 49 (50)
T ss_pred ccEEEEcCCCCcEEECCCCCCC
Confidence 4899999999999999987654
No 43
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=86.08 E-value=0.33 Score=46.30 Aligned_cols=38 Identities=26% Similarity=0.448 Sum_probs=35.0
Q ss_pred CCCcHHHHHHHhhcCCccccccccccchhhhhhhCChH
Q 016018 5 SDLPEELVFKILVLLPVDSLLCSKCVQKSWYSLITNSR 42 (396)
Q Consensus 5 ~~LP~Dll~eIL~rLP~~sl~r~r~VcK~W~~li~~~~ 42 (396)
..||.|++..||+-|..++++|++.+||.|+.+..|..
T Consensus 73 ~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~ 110 (483)
T KOG4341|consen 73 RSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGS 110 (483)
T ss_pred ccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccc
Confidence 36999999999999999999999999999999887754
No 44
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=84.89 E-value=34 Score=33.89 Aligned_cols=94 Identities=14% Similarity=0.221 Sum_probs=48.0
Q ss_pred cEEEEcchhhhhccccccccCCCCcceeEEEEEEecCCCCeEEEEEEEEeCCCCcccceEEEEEcCCC--cccccccccc
Q 016018 122 RVVLANPAIREFRHLREHCYHSFSYWMGCVGFGYDVKSNDYKVVRILCISDGSGLCHLKVEVYTLSAD--CWRELVANID 199 (396)
Q Consensus 122 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~yKVv~~~~~~~~~~~~~~~~evys~~t~--~Wr~~~~~~~ 199 (396)
.+.|+|-+|+||. +|..... ..-.++++||... .-|+++++..-+. ....=+.|.+... .||.+...++
T Consensus 58 ELHvYNTatnqWf-~PavrGD---iPpgcAA~Gfvcd--GtrilvFGGMvEY---GkYsNdLYELQasRWeWkrlkp~~p 128 (830)
T KOG4152|consen 58 ELHVYNTATNQWF-APAVRGD---IPPGCAAFGFVCD--GTRILVFGGMVEY---GKYSNDLYELQASRWEWKRLKPKTP 128 (830)
T ss_pred hhhhhccccceee-cchhcCC---CCCchhhcceEec--CceEEEEccEeee---ccccchHHHhhhhhhhHhhcCCCCC
Confidence 8999999999997 4443221 1112344454332 3456666543221 1244556777654 5777664221
Q ss_pred ccccccccccCCcceEEEcceEEEEE
Q 016018 200 FLGAGTRFLKDNFECQYFRGACYWIL 225 (396)
Q Consensus 200 ~~~~~~~~~~~~~~~v~~~G~lywl~ 225 (396)
..-++++...+.+-+.++...|-+.
T Consensus 129 -~nG~pPCPRlGHSFsl~gnKcYlFG 153 (830)
T KOG4152|consen 129 -KNGPPPCPRLGHSFSLVGNKCYLFG 153 (830)
T ss_pred -CCCCCCCCccCceeEEeccEeEEec
Confidence 1112334333333455556666654
No 45
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=84.86 E-value=28 Score=31.01 Aligned_cols=204 Identities=13% Similarity=0.082 Sum_probs=108.2
Q ss_pred eCceEEEeEc-CCcEEEEcchhhhhccccccccCCCCcceeEEEEEEecCCCCeEEEEEEEEeCCCCcccceEEEEEcCC
Q 016018 110 CHGIVCFALL-SGRVVLANPAIREFRHLREHCYHSFSYWMGCVGFGYDVKSNDYKVVRILCISDGSGLCHLKVEVYTLSA 188 (396)
Q Consensus 110 c~GLlc~~~~-~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~yKVv~~~~~~~~~~~~~~~~evys~~t 188 (396)
.+|-|.+.+. .+.++.++|.+++...+..+. ..|+.++...+ +++... .....+++..+
T Consensus 10 ~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~---------~~G~~~~~~~g--~l~v~~---------~~~~~~~d~~~ 69 (246)
T PF08450_consen 10 RDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG---------PNGMAFDRPDG--RLYVAD---------SGGIAVVDPDT 69 (246)
T ss_dssp TTTEEEEEETTTTEEEEEETTTTEEEEEESSS---------EEEEEEECTTS--EEEEEE---------TTCEEEEETTT
T ss_pred CCCEEEEEEcCCCEEEEEECCCCeEEEEecCC---------CceEEEEccCC--EEEEEE---------cCceEEEecCC
Confidence 3566666553 458999999999887654331 35666663222 222221 14556678888
Q ss_pred CccccccccccccccccccccCCcceEEEcceEEEEEeccCCcccccCCCCc--cEEEEEeCCCceeeee----cCCCCc
Q 016018 189 DCWRELVANIDFLGAGTRFLKDNFECQYFRGACYWILWDKSVGINYNNLVNG--DFIFSFDMSDEVFQKL----PVPNIL 262 (396)
Q Consensus 189 ~~Wr~~~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~~~~--~~il~fD~~~e~~~~i----~lP~~~ 262 (396)
+.++.+...+. ........+.-.+--+|.+|.-..... ..... ..|..+|.. .+...+ ..|.
T Consensus 70 g~~~~~~~~~~---~~~~~~~~ND~~vd~~G~ly~t~~~~~------~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pN-- 137 (246)
T PF08450_consen 70 GKVTVLADLPD---GGVPFNRPNDVAVDPDGNLYVTDSGGG------GASGIDPGSVYRIDPD-GKVTVVADGLGFPN-- 137 (246)
T ss_dssp TEEEEEEEEET---TCSCTEEEEEEEE-TTS-EEEEEECCB------CTTCGGSEEEEEEETT-SEEEEEEEEESSEE--
T ss_pred CcEEEEeeccC---CCcccCCCceEEEcCCCCEEEEecCCC------ccccccccceEEECCC-CeEEEEecCccccc--
Confidence 88887664110 000111111224444688776544331 01111 579999999 444432 2222
Q ss_pred cccccccceEEEecCeeEEEEeecCCCccEEEEEEEccCCCCCCeEEEEEec-CCCC--cceeEEEEeCCcEEEEec-CC
Q 016018 263 NEIDQEFSKLTVLNESLAFVLRDKYRKSYEIQIWVMDEFGANEIWKKLFTTE-PFCE--IKRPLSFCERGELIMEDY-YR 338 (396)
Q Consensus 263 ~~~~~~~~~l~~~~g~L~~~~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~i~-~~~~--~~~p~~~~~~g~il~~~~-~~ 338 (396)
.....-+|+..+++... . -.||.++-......+..+..+- .... ...-+++..+|.|++... .+
T Consensus 138 -------Gi~~s~dg~~lyv~ds~---~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~ 205 (246)
T PF08450_consen 138 -------GIAFSPDGKTLYVADSF---N--GRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGG 205 (246)
T ss_dssp -------EEEEETTSSEEEEEETT---T--TEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTT
T ss_pred -------ceEECCcchheeecccc---c--ceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCC
Confidence 12233456544443332 1 3477766432234466555442 2222 223366778888887754 67
Q ss_pred eEEEEECCCCcEEEEeecC
Q 016018 339 EACSYNLGTKEIKKLPVLP 357 (396)
Q Consensus 339 ~l~~yd~~t~~~~~~~~~~ 357 (396)
++..||++.+.++.+.++.
T Consensus 206 ~I~~~~p~G~~~~~i~~p~ 224 (246)
T PF08450_consen 206 RIVVFDPDGKLLREIELPV 224 (246)
T ss_dssp EEEEEETTSCEEEEEE-SS
T ss_pred EEEEECCCccEEEEEcCCC
Confidence 8999999977778787663
No 46
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=83.80 E-value=0.36 Score=48.66 Aligned_cols=44 Identities=30% Similarity=0.487 Sum_probs=39.6
Q ss_pred CCCCcHHHHHHHhhcCCccccccccccchhhhhhhCChHHHHHH
Q 016018 4 FSDLPEELVFKILVLLPVDSLLCSKCVQKSWYSLITNSRFVVKH 47 (396)
Q Consensus 4 ~~~LP~Dll~eIL~rLP~~sl~r~r~VcK~W~~li~~~~F~~~~ 47 (396)
+..||.++...||..|+.+++++++.||+.|+.++.+.......
T Consensus 108 i~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~~~ 151 (537)
T KOG0274|consen 108 LSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWWRM 151 (537)
T ss_pred hhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhhhh
Confidence 45799999999999999999999999999999999987776643
No 47
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=82.09 E-value=52 Score=31.97 Aligned_cols=119 Identities=13% Similarity=0.172 Sum_probs=63.7
Q ss_pred EEEcceEEEEEeccCCcccccCCCCccEEEEEeCCCce---eeeecCCCCccccccccceEEEecCeeEEEEeecCCCcc
Q 016018 215 QYFRGACYWILWDKSVGINYNNLVNGDFIFSFDMSDEV---FQKLPVPNILNEIDQEFSKLTVLNESLAFVLRDKYRKSY 291 (396)
Q Consensus 215 v~~~G~lywl~~~~~~~~~~~~~~~~~~il~fD~~~e~---~~~i~lP~~~~~~~~~~~~l~~~~g~L~~~~~~~~~~~~ 291 (396)
-..++.+|.++... .....|++.|+.+-. |..+-+|.. .......+...++.|.+.........
T Consensus 284 ~~~~~~~yi~Tn~~---------a~~~~l~~~~l~~~~~~~~~~~l~~~~---~~~~l~~~~~~~~~Lvl~~~~~~~~~- 350 (414)
T PF02897_consen 284 DHHGDRLYILTNDD---------APNGRLVAVDLADPSPAEWWTVLIPED---EDVSLEDVSLFKDYLVLSYRENGSSR- 350 (414)
T ss_dssp EEETTEEEEEE-TT----------TT-EEEEEETTSTSGGGEEEEEE--S---SSEEEEEEEEETTEEEEEEEETTEEE-
T ss_pred EccCCEEEEeeCCC---------CCCcEEEEecccccccccceeEEcCCC---CceeEEEEEEECCEEEEEEEECCccE-
Confidence 34577888877654 335699999998765 553333331 11122344556788776666543333
Q ss_pred EEEEEEEccCCCCCCeEEEEEecCCCCcceeEEEE---eCCcEEEEec----CCeEEEEECCCCcEEEEe
Q 016018 292 EIQIWVMDEFGANEIWKKLFTTEPFCEIKRPLSFC---ERGELIMEDY----YREACSYNLGTKEIKKLP 354 (396)
Q Consensus 292 ~~~IW~l~~~~~~~~W~~~~~i~~~~~~~~p~~~~---~~g~il~~~~----~~~l~~yd~~t~~~~~~~ 354 (396)
|.|+-+. ..|.... +.+.. ........ ..+++.|... ...++.||+++++.+.+.
T Consensus 351 -l~v~~~~-----~~~~~~~-~~~p~-~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~k 412 (414)
T PF02897_consen 351 -LRVYDLD-----DGKESRE-IPLPE-AGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTLLK 412 (414)
T ss_dssp -EEEEETT------TEEEEE-EESSS-SSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEEEE
T ss_pred -EEEEECC-----CCcEEee-ecCCc-ceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEEEE
Confidence 6665555 1244443 33322 11212222 2335555432 357999999999998764
No 48
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=81.70 E-value=35 Score=29.83 Aligned_cols=194 Identities=11% Similarity=0.037 Sum_probs=90.3
Q ss_pred eCceEEEeEcCCcEEEEcchhhhhccccccccCCCCcceeEEEEEEecCCCCeEEEEEEEEeCCCCcccceEEEEEcCCC
Q 016018 110 CHGIVCFALLSGRVVLANPAIREFRHLREHCYHSFSYWMGCVGFGYDVKSNDYKVVRILCISDGSGLCHLKVEVYTLSAD 189 (396)
Q Consensus 110 c~GLlc~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~yKVv~~~~~~~~~~~~~~~~evys~~t~ 189 (396)
.+|.+.+...++.++.+|+.|++...--..+.+ .... |...+=+|+... . .-.+..++..++
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~-~~~~---------~~~~~~~v~v~~---~-----~~~l~~~d~~tG 96 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGP-ISGA---------PVVDGGRVYVGT---S-----DGSLYALDAKTG 96 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSSC-GGSG---------EEEETTEEEEEE---T-----TSEEEEEETTTS
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeecccc-ccce---------eeeccccccccc---c-----eeeeEecccCCc
Confidence 688887777777999999999986643322211 0011 010111222221 0 125566665555
Q ss_pred --cccc-ccccccccccccccccCCcceEEEcceEEEEEeccCCcccccCCCCccEEEEEeCCCcee--ee-ecCCCCcc
Q 016018 190 --CWRE-LVANIDFLGAGTRFLKDNFECQYFRGACYWILWDKSVGINYNNLVNGDFIFSFDMSDEVF--QK-LPVPNILN 263 (396)
Q Consensus 190 --~Wr~-~~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~~~~~~il~fD~~~e~~--~~-i~lP~~~~ 263 (396)
.|+. .... + ... ..........++.+|...... .|.++|+++.+- .. +..|....
T Consensus 97 ~~~W~~~~~~~----~-~~~-~~~~~~~~~~~~~~~~~~~~g-------------~l~~~d~~tG~~~w~~~~~~~~~~~ 157 (238)
T PF13360_consen 97 KVLWSIYLTSS----P-PAG-VRSSSSPAVDGDRLYVGTSSG-------------KLVALDPKTGKLLWKYPVGEPRGSS 157 (238)
T ss_dssp CEEEEEEE-SS----C-TCS-TB--SEEEEETTEEEEEETCS-------------EEEEEETTTTEEEEEEESSTT-SS-
T ss_pred ceeeeeccccc----c-ccc-cccccCceEecCEEEEEeccC-------------cEEEEecCCCcEEEEeecCCCCCCc
Confidence 6884 4320 0 011 112222344466676655444 799999887644 22 23333100
Q ss_pred c---cccccceEEEecCeeEEEEeecCCCccEEEEEEEccCCCCCCeEEEEEecCCCCcceeEEEEeCCcEEEEecCCeE
Q 016018 264 E---IDQEFSKLTVLNESLAFVLRDKYRKSYEIQIWVMDEFGANEIWKKLFTTEPFCEIKRPLSFCERGELIMEDYYREA 340 (396)
Q Consensus 264 ~---~~~~~~~l~~~~g~L~~~~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~i~~~~~~~~p~~~~~~g~il~~~~~~~l 340 (396)
. .......++..+|.+++..... .. +.+ -++. + +..|++. +. .. .+.....++.+++...++.+
T Consensus 158 ~~~~~~~~~~~~~~~~~~v~~~~~~g--~~--~~~-d~~t-g-~~~w~~~--~~---~~-~~~~~~~~~~l~~~~~~~~l 224 (238)
T PF13360_consen 158 PISSFSDINGSPVISDGRVYVSSGDG--RV--VAV-DLAT-G-EKLWSKP--IS---GI-YSLPSVDGGTLYVTSSDGRL 224 (238)
T ss_dssp -EEEETTEEEEEECCTTEEEEECCTS--SE--EEE-ETTT-T-EEEEEEC--SS----E-CECEECCCTEEEEEETTTEE
T ss_pred ceeeecccccceEEECCEEEEEcCCC--eE--EEE-ECCC-C-CEEEEec--CC---Cc-cCCceeeCCEEEEEeCCCEE
Confidence 0 0001123344456444322221 22 333 2222 1 2236222 22 11 11123344445555557899
Q ss_pred EEEECCCCcEEEE
Q 016018 341 CSYNLGTKEIKKL 353 (396)
Q Consensus 341 ~~yd~~t~~~~~~ 353 (396)
+++|++|++..+.
T Consensus 225 ~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 225 YALDLKTGKVVWQ 237 (238)
T ss_dssp EEEETTTTEEEEE
T ss_pred EEEECCCCCEEeE
Confidence 9999999998764
No 49
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=80.85 E-value=5.7 Score=25.55 Aligned_cols=42 Identities=14% Similarity=0.146 Sum_probs=29.8
Q ss_pred ceEEEcceEEEEEeccCCcccccCCCCccEEEEEeCCCceeeeecC
Q 016018 213 ECQYFRGACYWILWDKSVGINYNNLVNGDFIFSFDMSDEVFQKLPV 258 (396)
Q Consensus 213 ~~v~~~G~lywl~~~~~~~~~~~~~~~~~~il~fD~~~e~~~~i~l 258 (396)
..+.++|.||.+.... ..........+-.||+++.+|+.++.
T Consensus 6 s~~~~~~kiyv~GG~~----~~~~~~~~~~v~~~d~~t~~W~~~~~ 47 (49)
T PF07646_consen 6 SAVVLDGKIYVFGGYG----TDNGGSSSNDVWVFDTETNQWTELSP 47 (49)
T ss_pred EEEEECCEEEEECCcc----cCCCCcccceeEEEECCCCEEeecCC
Confidence 4788889988876551 00123445689999999999998754
No 50
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=80.66 E-value=50 Score=32.21 Aligned_cols=102 Identities=14% Similarity=0.221 Sum_probs=59.7
Q ss_pred ccEEEEEeCCCceeeeecCCCCccccccccceEEEecCeeEEEEeecCCCccEEEEEEEccCCCCCCeEEEEEecCCCCc
Q 016018 240 GDFIFSFDMSDEVFQKLPVPNILNEIDQEFSKLTVLNESLAFVLRDKYRKSYEIQIWVMDEFGANEIWKKLFTTEPFCEI 319 (396)
Q Consensus 240 ~~~il~fD~~~e~~~~i~lP~~~~~~~~~~~~l~~~~g~L~~~~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~i~~~~~~ 319 (396)
..++.+||+++.+...+..|...+........+. -++...++... ... |.+-.++ .++|..-..|+ +.
T Consensus 279 rky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVS-hd~~fia~~G~--~G~--I~lLhak----T~eli~s~Kie---G~ 346 (514)
T KOG2055|consen 279 RKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVS-HDSNFIAIAGN--NGH--IHLLHAK----TKELITSFKIE---GV 346 (514)
T ss_pred ceEEEEeeccccccccccCCCCcccchhheeEec-CCCCeEEEccc--Cce--EEeehhh----hhhhhheeeec---cE
Confidence 3589999999999999988875332222111111 22332222222 122 5554444 24566666554 23
Q ss_pred ceeEEEEeCCcEEEE-ecCCeEEEEECCCCcEEEE
Q 016018 320 KRPLSFCERGELIME-DYYREACSYNLGTKEIKKL 353 (396)
Q Consensus 320 ~~p~~~~~~g~il~~-~~~~~l~~yd~~t~~~~~~ 353 (396)
..-+.+..+|+.|+. ..++.++.+|++++.+...
T Consensus 347 v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~r 381 (514)
T KOG2055|consen 347 VSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHR 381 (514)
T ss_pred EeeEEEecCCcEEEEEcCCceEEEEecCCcceEEE
Confidence 345666677765554 5577999999999976543
No 51
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=78.02 E-value=53 Score=31.71 Aligned_cols=115 Identities=10% Similarity=0.085 Sum_probs=64.8
Q ss_pred ceEEEcceEEEEEeccCCcccccCCCCccEEEEEeCCCc--eeeeecCCCCccccc-----cccceEEEecCeeEEEEee
Q 016018 213 ECQYFRGACYWILWDKSVGINYNNLVNGDFIFSFDMSDE--VFQKLPVPNILNEID-----QEFSKLTVLNESLAFVLRD 285 (396)
Q Consensus 213 ~~v~~~G~lywl~~~~~~~~~~~~~~~~~~il~fD~~~e--~~~~i~lP~~~~~~~-----~~~~~l~~~~g~L~~~~~~ 285 (396)
.++..+|.+|.....+ .|.++|.++. .|+ .+++....... ......+..+|++++....
T Consensus 64 sPvv~~~~vy~~~~~g-------------~l~ald~~tG~~~W~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~ 129 (394)
T PRK11138 64 HPAVAYNKVYAADRAG-------------LVKALDADTGKEIWS-VDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEK 129 (394)
T ss_pred ccEEECCEEEEECCCC-------------eEEEEECCCCcEeeE-EcCCCcccccccccccccccccEEECCEEEEEcCC
Confidence 4788999999876554 7999998644 444 33332100000 0012345667777653321
Q ss_pred cCCCccEEEEEEEccCCCCCCeEEEEEecCCCCcceeEEEEeCCcEEEEecCCeEEEEECCCCcEEEE
Q 016018 286 KYRKSYEIQIWVMDEFGANEIWKKLFTTEPFCEIKRPLSFCERGELIMEDYYREACSYNLGTKEIKKL 353 (396)
Q Consensus 286 ~~~~~~~~~IW~l~~~~~~~~W~~~~~i~~~~~~~~p~~~~~~g~il~~~~~~~l~~yd~~t~~~~~~ 353 (396)
=.+..++....+..|+.... . .....|+. .++.+++...++.++.+|.++++..+-
T Consensus 130 -------g~l~ald~~tG~~~W~~~~~--~-~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~ 185 (394)
T PRK11138 130 -------GQVYALNAEDGEVAWQTKVA--G-EALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWT 185 (394)
T ss_pred -------CEEEEEECCCCCCcccccCC--C-ceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeee
Confidence 13555553222567876531 1 11234433 355666666677899999999987653
No 52
>smart00612 Kelch Kelch domain.
Probab=77.72 E-value=4.5 Score=25.18 Aligned_cols=19 Identities=32% Similarity=0.510 Sum_probs=16.3
Q ss_pred cceEEEEEcCCCccccccc
Q 016018 178 HLKVEVYTLSADCWRELVA 196 (396)
Q Consensus 178 ~~~~evys~~t~~Wr~~~~ 196 (396)
...+++|+.+++.|+.++.
T Consensus 14 ~~~v~~yd~~~~~W~~~~~ 32 (47)
T smart00612 14 LKSVEVYDPETNKWTPLPS 32 (47)
T ss_pred eeeEEEECCCCCeEccCCC
Confidence 3678999999999998774
No 53
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=77.44 E-value=66 Score=30.47 Aligned_cols=108 Identities=12% Similarity=0.214 Sum_probs=60.8
Q ss_pred cEEEEEeCC--Cceeeee----cCCCCccccccccceEEE-ecCeeEEEEeecCCCccEEEEEEEccCCCCCCeEEEEEe
Q 016018 241 DFIFSFDMS--DEVFQKL----PVPNILNEIDQEFSKLTV-LNESLAFVLRDKYRKSYEIQIWVMDEFGANEIWKKLFTT 313 (396)
Q Consensus 241 ~~il~fD~~--~e~~~~i----~lP~~~~~~~~~~~~l~~-~~g~L~~~~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~i 313 (396)
..|.+|++. +.++..+ .+|.... ....-..+.. -+|+..++... ..++ |.++.++.. .+.-+....+
T Consensus 214 ~~v~v~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~i~ispdg~~lyvsnr-~~~s--I~vf~~d~~--~g~l~~~~~~ 287 (345)
T PF10282_consen 214 NTVSVFDYDPSDGSLTEIQTISTLPEGFT-GENAPAEIAISPDGRFLYVSNR-GSNS--ISVFDLDPA--TGTLTLVQTV 287 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEEEESCETTSC-SSSSEEEEEE-TTSSEEEEEEC-TTTE--EEEEEECTT--TTTEEEEEEE
T ss_pred CcEEEEeecccCCceeEEEEeeecccccc-ccCCceeEEEecCCCEEEEEec-cCCE--EEEEEEecC--CCceEEEEEE
Confidence 467777766 6666543 3444211 1111233433 36775555444 3466 999999653 2345555555
Q ss_pred cCCCCcceeEEEEeCCcEEEEec--CCeEEEE--ECCCCcEEEEe
Q 016018 314 EPFCEIKRPLSFCERGELIMEDY--YREACSY--NLGTKEIKKLP 354 (396)
Q Consensus 314 ~~~~~~~~p~~~~~~g~il~~~~--~~~l~~y--d~~t~~~~~~~ 354 (396)
+......+-+.+..+|+.|+..+ .+.+..| |.++++++.+.
T Consensus 288 ~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 288 PTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVG 332 (345)
T ss_dssp EESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEE
T ss_pred eCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEec
Confidence 54333345577888998777654 4456666 66788888765
No 54
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=76.03 E-value=6 Score=24.94 Aligned_cols=34 Identities=26% Similarity=0.313 Sum_probs=24.7
Q ss_pred eEEEEEEEEeCCCCcccceEEEEEcCCCccccccc
Q 016018 162 YKVVRILCISDGSGLCHLKVEVYTLSADCWRELVA 196 (396)
Q Consensus 162 yKVv~~~~~~~~~~~~~~~~evys~~t~~Wr~~~~ 196 (396)
=+|..++.... .......+++|+..++.|+.++.
T Consensus 12 ~~iyv~GG~~~-~~~~~~~v~~yd~~~~~W~~~~~ 45 (47)
T PF01344_consen 12 NKIYVIGGYDG-NNQPTNSVEVYDPETNTWEELPP 45 (47)
T ss_dssp TEEEEEEEBES-TSSBEEEEEEEETTTTEEEEEEE
T ss_pred CEEEEEeeecc-cCceeeeEEEEeCCCCEEEEcCC
Confidence 45666666544 22345899999999999999874
No 55
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=73.95 E-value=11 Score=21.55 Aligned_cols=26 Identities=15% Similarity=0.076 Sum_probs=20.0
Q ss_pred eCCcEEEEecCCeEEEEECCCCcEEE
Q 016018 327 ERGELIMEDYYREACSYNLGTKEIKK 352 (396)
Q Consensus 327 ~~g~il~~~~~~~l~~yd~~t~~~~~ 352 (396)
.+|.+++...++.++.+|.++++..+
T Consensus 5 ~~~~v~~~~~~g~l~a~d~~~G~~~W 30 (33)
T smart00564 5 SDGTVYVGSTDGTLYALDAKTGEILW 30 (33)
T ss_pred ECCEEEEEcCCCEEEEEEcccCcEEE
Confidence 45556666667899999999998765
No 56
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=71.52 E-value=54 Score=30.00 Aligned_cols=124 Identities=15% Similarity=0.111 Sum_probs=73.0
Q ss_pred eEEEeeeCceEEEeEc-CCcEEEEcchhhhhccccccccCCCCcceeEEEEEEecCCCCeEEEEEEEEeCCCCcccceEE
Q 016018 104 YKLVGHCHGIVCFALL-SGRVVLANPAIREFRHLREHCYHSFSYWMGCVGFGYDVKSNDYKVVRILCISDGSGLCHLKVE 182 (396)
Q Consensus 104 ~~~~~sc~GLlc~~~~-~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~yKVv~~~~~~~~~~~~~~~~e 182 (396)
+-+++.-+|=|-+..- .+.+.-.||.++.--.+|.+..- ... .-...-|+.. -+++... ..-.+.
T Consensus 192 yGi~atpdGsvwyaslagnaiaridp~~~~aev~p~P~~~--~~g--sRriwsdpig----~~wittw------g~g~l~ 257 (353)
T COG4257 192 YGICATPDGSVWYASLAGNAIARIDPFAGHAEVVPQPNAL--KAG--SRRIWSDPIG----RAWITTW------GTGSLH 257 (353)
T ss_pred cceEECCCCcEEEEeccccceEEcccccCCcceecCCCcc--ccc--ccccccCccC----cEEEecc------CCceee
Confidence 4456666777755542 34777889999977788876431 111 1112224322 1222211 125677
Q ss_pred EEEcCCCccccccccccccccccccccCCcceEEEcce-EEEEEeccCCcccccCCCCccEEEEEeCCCceeeeecCCCC
Q 016018 183 VYTLSADCWRELVANIDFLGAGTRFLKDNFECQYFRGA-CYWILWDKSVGINYNNLVNGDFIFSFDMSDEVFQKLPVPNI 261 (396)
Q Consensus 183 vys~~t~~Wr~~~~~~~~~~~~~~~~~~~~~~v~~~G~-lywl~~~~~~~~~~~~~~~~~~il~fD~~~e~~~~i~lP~~ 261 (396)
-|+..+.+|++-.- + .. -... ..++|+.. .-|+..-. ...|+.||.++++|+++++|..
T Consensus 258 rfdPs~~sW~eypL-----P--gs-~arp-ys~rVD~~grVW~sea~-----------agai~rfdpeta~ftv~p~pr~ 317 (353)
T COG4257 258 RFDPSVTSWIEYPL-----P--GS-KARP-YSMRVDRHGRVWLSEAD-----------AGAIGRFDPETARFTVLPIPRP 317 (353)
T ss_pred EeCcccccceeeeC-----C--CC-CCCc-ceeeeccCCcEEeeccc-----------cCceeecCcccceEEEecCCCC
Confidence 78888888987652 1 11 1111 25566543 45665443 4589999999999999999873
No 57
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=70.34 E-value=9.1 Score=24.41 Aligned_cols=37 Identities=14% Similarity=0.151 Sum_probs=19.8
Q ss_pred eEEE-cceEEEEEeccCCcccccCCCCccEEEEEeCCCceeeee
Q 016018 214 CQYF-RGACYWILWDKSVGINYNNLVNGDFIFSFDMSDEVFQKL 256 (396)
Q Consensus 214 ~v~~-~G~lywl~~~~~~~~~~~~~~~~~~il~fD~~~e~~~~i 256 (396)
.+.+ +|.+|-...... .......+..||+++++|+++
T Consensus 7 ~~~~~~~~i~v~GG~~~------~~~~~~d~~~~d~~~~~W~~~ 44 (49)
T PF13418_consen 7 AVSIGDNSIYVFGGRDS------SGSPLNDLWIFDIETNTWTRL 44 (49)
T ss_dssp EEEE-TTEEEEE--EEE-------TEE---EEEEETTTTEEEE-
T ss_pred EEEEeCCeEEEECCCCC------CCcccCCEEEEECCCCEEEEC
Confidence 4555 366665543331 011234688999999999988
No 58
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=69.89 E-value=1e+02 Score=29.19 Aligned_cols=106 Identities=11% Similarity=0.254 Sum_probs=62.6
Q ss_pred ccEEEEEeCCCce--ee---eecCCCCccccccccceEEEecCeeEEEEeecCCCccEEEEEEEccCCCCCCeEEEEEec
Q 016018 240 GDFIFSFDMSDEV--FQ---KLPVPNILNEIDQEFSKLTVLNESLAFVLRDKYRKSYEIQIWVMDEFGANEIWKKLFTTE 314 (396)
Q Consensus 240 ~~~il~fD~~~e~--~~---~i~lP~~~~~~~~~~~~l~~~~g~L~~~~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~i~ 314 (396)
...|..|++..+. .. .+.+|.... .++ ....-+|+.+++... ..++ +.+..++.. +..++...+++
T Consensus 165 ~D~v~~~~~~~~~~~l~~~~~~~~~~G~G---PRh-~~f~pdg~~~Yv~~e-~s~~--v~v~~~~~~--~g~~~~~~~~~ 235 (345)
T PF10282_consen 165 ADRVYVYDIDDDTGKLTPVDSIKVPPGSG---PRH-LAFSPDGKYAYVVNE-LSNT--VSVFDYDPS--DGSLTEIQTIS 235 (345)
T ss_dssp TTEEEEEEE-TTS-TEEEEEEEECSTTSS---EEE-EEE-TTSSEEEEEET-TTTE--EEEEEEETT--TTEEEEEEEEE
T ss_pred CCEEEEEEEeCCCceEEEeeccccccCCC---CcE-EEEcCCcCEEEEecC-CCCc--EEEEeeccc--CCceeEEEEee
Confidence 3578888887655 43 356776422 221 122335665555443 3355 888888842 34788888887
Q ss_pred CCC-C-----cceeEEEEeCCcEEEEec--CCeEEEEEC--CCCcEEEEe
Q 016018 315 PFC-E-----IKRPLSFCERGELIMEDY--YREACSYNL--GTKEIKKLP 354 (396)
Q Consensus 315 ~~~-~-----~~~p~~~~~~g~il~~~~--~~~l~~yd~--~t~~~~~~~ 354 (396)
... . ...-+.++.+|+.|+..+ .+.+..|++ ++++++.+.
T Consensus 236 ~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~ 285 (345)
T PF10282_consen 236 TLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQ 285 (345)
T ss_dssp SCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEE
T ss_pred eccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEE
Confidence 542 1 234467788898777754 457888887 556777665
No 59
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=68.53 E-value=1e+02 Score=29.68 Aligned_cols=107 Identities=14% Similarity=0.223 Sum_probs=61.4
Q ss_pred ceEEEcceEEEEEeccCCcccccCCCCccEEEEEeCCCc--eeeeecCCCCccccccccceEEEecCeeEEEEeecCCCc
Q 016018 213 ECQYFRGACYWILWDKSVGINYNNLVNGDFIFSFDMSDE--VFQKLPVPNILNEIDQEFSKLTVLNESLAFVLRDKYRKS 290 (396)
Q Consensus 213 ~~v~~~G~lywl~~~~~~~~~~~~~~~~~~il~fD~~~e--~~~~i~lP~~~~~~~~~~~~l~~~~g~L~~~~~~~~~~~ 290 (396)
.++..+|.+|....++ .+.++|..+. .|+. +++. ...++..+|.|++.....
T Consensus 251 sP~v~~~~vy~~~~~g-------------~l~ald~~tG~~~W~~-~~~~--------~~~~~~~~~~vy~~~~~g---- 304 (394)
T PRK11138 251 TPVVVGGVVYALAYNG-------------NLVALDLRSGQIVWKR-EYGS--------VNDFAVDGGRIYLVDQND---- 304 (394)
T ss_pred CcEEECCEEEEEEcCC-------------eEEEEECCCCCEEEee-cCCC--------ccCcEEECCEEEEEcCCC----
Confidence 4788899999866544 7999999865 4543 2221 012345567766654321
Q ss_pred cEEEEEEEccCCCCCCeEEEEEecCCCCcceeEEEEeCCcEEEEecCCeEEEEECCCCcEEE
Q 016018 291 YEIQIWVMDEFGANEIWKKLFTTEPFCEIKRPLSFCERGELIMEDYYREACSYNLGTKEIKK 352 (396)
Q Consensus 291 ~~~~IW~l~~~~~~~~W~~~~~i~~~~~~~~p~~~~~~g~il~~~~~~~l~~yd~~t~~~~~ 352 (396)
.+..++-...+..|+... .. ......|+. .+|.|++...++.+++.|.+++++.+
T Consensus 305 ---~l~ald~~tG~~~W~~~~-~~-~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~ 359 (394)
T PRK11138 305 ---RVYALDTRGGVELWSQSD-LL-HRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVA 359 (394)
T ss_pred ---eEEEEECCCCcEEEcccc-cC-CCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 133333211134564321 10 011234443 46778777778899999999998765
No 60
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=68.49 E-value=80 Score=27.50 Aligned_cols=113 Identities=13% Similarity=0.180 Sum_probs=62.2
Q ss_pred eEEEcceEEEEEeccCCcccccCCCCccEEEEEeCCCcee-eeecCCCCccccccccceEEEecCeeEEEEeecCCCccE
Q 016018 214 CQYFRGACYWILWDKSVGINYNNLVNGDFIFSFDMSDEVF-QKLPVPNILNEIDQEFSKLTVLNESLAFVLRDKYRKSYE 292 (396)
Q Consensus 214 ~v~~~G~lywl~~~~~~~~~~~~~~~~~~il~fD~~~e~~-~~i~lP~~~~~~~~~~~~l~~~~g~L~~~~~~~~~~~~~ 292 (396)
.+.-+|.+|-.... ..|.++|..+.+- ....+|... .. .....++.+++.... .
T Consensus 32 ~~~~~~~v~~~~~~-------------~~l~~~d~~tG~~~W~~~~~~~~---~~---~~~~~~~~v~v~~~~---~--- 86 (238)
T PF13360_consen 32 AVPDGGRVYVASGD-------------GNLYALDAKTGKVLWRFDLPGPI---SG---APVVDGGRVYVGTSD---G--- 86 (238)
T ss_dssp EEEETTEEEEEETT-------------SEEEEEETTTSEEEEEEECSSCG---GS---GEEEETTEEEEEETT---S---
T ss_pred EEEeCCEEEEEcCC-------------CEEEEEECCCCCEEEEeeccccc---cc---eeeecccccccccce---e---
Confidence 44578888876433 3899999855543 334554421 11 135667777665521 2
Q ss_pred EEEEEEc-cCCCCCCeEEEEEecCCCCcceeEEEE-eCCcEEEEecCCeEEEEECCCCcEEEE
Q 016018 293 IQIWVMD-EFGANEIWKKLFTTEPFCEIKRPLSFC-ERGELIMEDYYREACSYNLGTKEIKKL 353 (396)
Q Consensus 293 ~~IW~l~-~~~~~~~W~~~~~i~~~~~~~~p~~~~-~~g~il~~~~~~~l~~yd~~t~~~~~~ 353 (396)
.|+.++ ..| +..|+....-........+.... .++.+++....+.++.+|+++++..+-
T Consensus 87 -~l~~~d~~tG-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~ 147 (238)
T PF13360_consen 87 -SLYALDAKTG-KVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWK 147 (238)
T ss_dssp -EEEEEETTTS-CEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEE
T ss_pred -eeEecccCCc-ceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEE
Confidence 455666 334 56788433222111122222222 344555555588999999999987553
No 61
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=67.58 E-value=12 Score=22.51 Aligned_cols=27 Identities=4% Similarity=-0.202 Sum_probs=20.7
Q ss_pred cEEEEecCCeEEEEECCCCcEEEEeec
Q 016018 330 ELIMEDYYREACSYNLGTKEIKKLPVL 356 (396)
Q Consensus 330 ~il~~~~~~~l~~yd~~t~~~~~~~~~ 356 (396)
.+++...++.++.+|.+|++..+-.-.
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~ 28 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQT 28 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEES
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeC
Confidence 455555678999999999998875433
No 62
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=65.02 E-value=12 Score=23.91 Aligned_cols=40 Identities=20% Similarity=0.296 Sum_probs=28.6
Q ss_pred eEEEecCeeEEEEee--cCCCccEEEEEEEccCCCCCCeEEEEE
Q 016018 271 KLTVLNESLAFVLRD--KYRKSYEIQIWVMDEFGANEIWKKLFT 312 (396)
Q Consensus 271 ~l~~~~g~L~~~~~~--~~~~~~~~~IW~l~~~~~~~~W~~~~~ 312 (396)
..++.+++|+++... .......-++|+++-. +.+|++.-.
T Consensus 6 s~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~--t~~W~~~~~ 47 (49)
T PF07646_consen 6 SAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTE--TNQWTELSP 47 (49)
T ss_pred EEEEECCEEEEECCcccCCCCcccceeEEEECC--CCEEeecCC
Confidence 457889999999988 2222233789999963 678987643
No 63
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=64.36 E-value=15 Score=27.40 Aligned_cols=17 Identities=29% Similarity=0.272 Sum_probs=14.1
Q ss_pred CCeEEEEECCCCcEEEE
Q 016018 337 YREACSYNLGTKEIKKL 353 (396)
Q Consensus 337 ~~~l~~yd~~t~~~~~~ 353 (396)
.++++.||++|++.+.+
T Consensus 36 ~GRll~ydp~t~~~~vl 52 (89)
T PF03088_consen 36 TGRLLRYDPSTKETTVL 52 (89)
T ss_dssp -EEEEEEETTTTEEEEE
T ss_pred CcCEEEEECCCCeEEEe
Confidence 35899999999998765
No 64
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=64.18 E-value=1.3e+02 Score=28.49 Aligned_cols=114 Identities=13% Similarity=0.181 Sum_probs=0.0
Q ss_pred cceEEEEEeccCCcccccCCCCccEEEEEeCCCceeeeecCC----------CCccccccccceEEEecCeeEEEEeec-
Q 016018 218 RGACYWILWDKSVGINYNNLVNGDFIFSFDMSDEVFQKLPVP----------NILNEIDQEFSKLTVLNESLAFVLRDK- 286 (396)
Q Consensus 218 ~G~lywl~~~~~~~~~~~~~~~~~~il~fD~~~e~~~~i~lP----------~~~~~~~~~~~~l~~~~g~L~~~~~~~- 286 (396)
+|.+||.+..+ .|...|++.+.-...+ | ...+...+....+-.-.|+|+++....
T Consensus 195 ~~~~~F~Sy~G-------------~v~~~dlsg~~~~~~~-~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~ 260 (342)
T PF06433_consen 195 GGRLYFVSYEG-------------NVYSADLSGDSAKFGK-PWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGG 260 (342)
T ss_dssp TTEEEEEBTTS-------------EEEEEEETTSSEEEEE-EEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--
T ss_pred CCeEEEEecCC-------------EEEEEeccCCcccccC-cccccCccccccCcCCcceeeeeeccccCeEEEEecCCC
Q ss_pred ----CCCccEEEEEEEccCCCCCCeEEEEEecCCCCcceeEEEEeCC--cEEEEec-CCeEEEEECCCCcEEE
Q 016018 287 ----YRKSYEIQIWVMDEFGANEIWKKLFTTEPFCEIKRPLSFCERG--ELIMEDY-YREACSYNLGTKEIKK 352 (396)
Q Consensus 287 ----~~~~~~~~IW~l~~~~~~~~W~~~~~i~~~~~~~~p~~~~~~g--~il~~~~-~~~l~~yd~~t~~~~~ 352 (396)
+... =+||+++ -..=.++.+|++.... ..+.+.+++ .++-+.. ++.|+.||..|++...
T Consensus 261 ~gsHKdpg--teVWv~D----~~t~krv~Ri~l~~~~-~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~ 326 (342)
T PF06433_consen 261 EGSHKDPG--TEVWVYD----LKTHKRVARIPLEHPI-DSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVR 326 (342)
T ss_dssp TT-TTS-E--EEEEEEE----TTTTEEEEEEEEEEEE-SEEEEESSSS-EEEEEETTTTEEEEEETTT--EEE
T ss_pred CCCccCCc--eEEEEEE----CCCCeEEEEEeCCCcc-ceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEe
No 65
>cd01207 Ena-Vasp Enabled-VASP-type homology (EVH1) domain. Enabled-VASP-type homology (EVH1) domain. The EVH1 domain binds to other proteins at proline rich sequences. It is found in proteins involved in cytoskeletal reorganization such as Enabled and VASP. Ena-VASP type EVH1 domains specifically recognize FPPPP motifs in the focal adhesion proteins zyxin and vinculin, and the ActA surface protein of Listeria monocytogenes. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=63.17 E-value=20 Score=27.90 Aligned_cols=42 Identities=12% Similarity=0.093 Sum_probs=30.7
Q ss_pred cEEEEcchhhhhccccccccCCCCcceeEEEEEEecCCCCeEEEEEE
Q 016018 122 RVVLANPAIREFRHLREHCYHSFSYWMGCVGFGYDVKSNDYKVVRIL 168 (396)
Q Consensus 122 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~yKVv~~~ 168 (396)
.+++.||.|+.| ||..+.+ .....+.+-+++..+.|+|+...
T Consensus 10 ~Vm~~d~~tk~W--~P~~~~~---~~ls~V~~~~~~~~~~yrIvg~~ 51 (111)
T cd01207 10 SVMVYDDSNKKW--VPAGGGS---QGFSRVQIYHHPRNNTFRVVGRK 51 (111)
T ss_pred EeeEEcCCCCcE--EcCCCCC---CCcceEEEEEcCCCCEEEEEEee
Confidence 678999999985 5654321 13456777888889999999864
No 66
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=62.37 E-value=1.6e+02 Score=28.91 Aligned_cols=173 Identities=13% Similarity=0.126 Sum_probs=89.2
Q ss_pred cchhhhhccccccccCCCCcceeEEEEEEecCCCCeEEEEEEEEeCCCCcccceEEEEEcCCCcccc-cccccccccccc
Q 016018 127 NPAIREFRHLREHCYHSFSYWMGCVGFGYDVKSNDYKVVRILCISDGSGLCHLKVEVYTLSADCWRE-LVANIDFLGAGT 205 (396)
Q Consensus 127 NP~T~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~yKVv~~~~~~~~~~~~~~~~evys~~t~~Wr~-~~~~~~~~~~~~ 205 (396)
+|-++-|.+.-.++.+. .......+.|.|.. -|.++... ...+++|++.+.+=+. +.. +. .
T Consensus 8 t~e~~~w~~~~~~~~~k--e~~~vssl~fsp~~-P~d~aVt~---------S~rvqly~~~~~~~~k~~sr----Fk--~ 69 (487)
T KOG0310|consen 8 TPEIRYWRQETFPPVHK--EHNSVSSLCFSPKH-PYDFAVTS---------SVRVQLYSSVTRSVRKTFSR----FK--D 69 (487)
T ss_pred Cccchhhhhhccccccc--ccCcceeEecCCCC-CCceEEec---------ccEEEEEecchhhhhhhHHh----hc--c
Confidence 55566666653332221 12233455555542 23333332 2789999998754332 322 10 0
Q ss_pred ccccCCcceEEEcceEEEEEeccCCcccccCCCCccEEEEEeCCCcee-eee---cCCCCccccccccceEEEecCeeEE
Q 016018 206 RFLKDNFECQYFRGACYWILWDKSVGINYNNLVNGDFIFSFDMSDEVF-QKL---PVPNILNEIDQEFSKLTVLNESLAF 281 (396)
Q Consensus 206 ~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~~~~~~il~fD~~~e~~-~~i---~lP~~~~~~~~~~~~l~~~~g~L~~ 281 (396)
. .. ...+..+|.|....... ..|-.||+.+... +.+ ..|.. .......++.+.+
T Consensus 70 ~--v~-s~~fR~DG~LlaaGD~s------------G~V~vfD~k~r~iLR~~~ah~apv~-------~~~f~~~d~t~l~ 127 (487)
T KOG0310|consen 70 V--VY-SVDFRSDGRLLAAGDES------------GHVKVFDMKSRVILRQLYAHQAPVH-------VTKFSPQDNTMLV 127 (487)
T ss_pred c--ee-EEEeecCCeEEEccCCc------------CcEEEeccccHHHHHHHhhccCcee-------EEEecccCCeEEE
Confidence 0 01 11334459887654333 4789999655222 222 22321 1122233444444
Q ss_pred EEeecCCCccEEEEEEEccCCCCCCeEEEEEecCCCCcceeEEEEe-CCcEEEEec-CCeEEEEECCCCc
Q 016018 282 VLRDKYRKSYEIQIWVMDEFGANEIWKKLFTTEPFCEIKRPLSFCE-RGELIMEDY-YREACSYNLGTKE 349 (396)
Q Consensus 282 ~~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~i~~~~~~~~p~~~~~-~g~il~~~~-~~~l~~yd~~t~~ 349 (396)
.+.+. .. ..+|.+... . . ...+.-..++.+-..+.. ++.|++.+. ++.+-.||.++.+
T Consensus 128 s~sDd--~v--~k~~d~s~a---~--v-~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~ 187 (487)
T KOG0310|consen 128 SGSDD--KV--VKYWDLSTA---Y--V-QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLT 187 (487)
T ss_pred ecCCC--ce--EEEEEcCCc---E--E-EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCC
Confidence 33332 44 899999963 2 2 334443345555555554 455777754 6789999999996
No 67
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=61.80 E-value=1.5e+02 Score=28.31 Aligned_cols=118 Identities=12% Similarity=0.117 Sum_probs=68.1
Q ss_pred EEcceEEEEEeccCCcccccCCCCccEEEEEeCCCc------eeeeecCC---CCccccccccceEEEecCeeEEEEeec
Q 016018 216 YFRGACYWILWDKSVGINYNNLVNGDFIFSFDMSDE------VFQKLPVP---NILNEIDQEFSKLTVLNESLAFVLRDK 286 (396)
Q Consensus 216 ~~~G~lywl~~~~~~~~~~~~~~~~~~il~fD~~~e------~~~~i~lP---~~~~~~~~~~~~l~~~~g~L~~~~~~~ 286 (396)
-.+|..+|.+..+ .|..+|+++. .|..+..- .........-..+..-+++|+++....
T Consensus 203 ~~dg~~~~vs~eG-------------~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~ 269 (352)
T TIGR02658 203 NKSGRLVWPTYTG-------------KIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQR 269 (352)
T ss_pred cCCCcEEEEecCC-------------eEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCC
Confidence 3368888887665 7889997554 23322111 111111111111112245555534321
Q ss_pred C-----CCccEEEEEEEccCCCCCCeEEEEEecCCCCcceeEEEEeCCc-EEEEec--CCeEEEEECCCCcE-EEE
Q 016018 287 Y-----RKSYEIQIWVMDEFGANEIWKKLFTTEPFCEIKRPLSFCERGE-LIMEDY--YREACSYNLGTKEI-KKL 353 (396)
Q Consensus 287 ~-----~~~~~~~IW~l~~~~~~~~W~~~~~i~~~~~~~~p~~~~~~g~-il~~~~--~~~l~~yd~~t~~~-~~~ 353 (396)
. ... =+||+++- .++....+|.... -...+++..+|+ .++..+ .+.+..+|..+.+. +.+
T Consensus 270 ~~~thk~~~--~~V~ViD~----~t~kvi~~i~vG~-~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 270 AKWTHKTAS--RFLFVVDA----KTGKRLRKIELGH-EIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred ccccccCCC--CEEEEEEC----CCCeEEEEEeCCC-ceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 1 222 37999983 5688888887643 235688889998 777655 45699999999854 555
No 68
>cd01206 Homer Homer type EVH1 domain. Homer type EVH1 domain. Homer is a synaptic scaffolding protein, involved in neuronal signaling. It contains an EVH1 domain, which binds to both neurotransmitter receptors, such as the metabotropic glutamate receptor (mGluR) and to other scaffolding proteins via PPXXF motifs, in order to target them to the synaptic junction. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=61.58 E-value=15 Score=28.23 Aligned_cols=39 Identities=18% Similarity=0.308 Sum_probs=29.6
Q ss_pred cEEEEcchhh-hhccccccccCCCCcceeEEEEEEecCCCCeEEEEEE
Q 016018 122 RVVLANPAIR-EFRHLREHCYHSFSYWMGCVGFGYDVKSNDYKVVRIL 168 (396)
Q Consensus 122 ~~~V~NP~T~-~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~yKVv~~~ 168 (396)
.+++++|.|| .|. |..+. ...+.+-+|+..+.|+||.+.
T Consensus 12 ~V~~yd~~tKk~Wv--Ps~~~------~~~V~~y~~~~~ntfRIi~~~ 51 (111)
T cd01206 12 HVFQIDPKTKKNWI--PASKH------AVTVSYFYDSTRNVYRIISVG 51 (111)
T ss_pred EEEEECCCCcceeE--eCCCC------ceeEEEEecCCCcEEEEEEec
Confidence 7899999986 774 44321 246778889999999999865
No 69
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=61.11 E-value=1.2e+02 Score=26.88 Aligned_cols=110 Identities=14% Similarity=0.104 Sum_probs=63.2
Q ss_pred eEEE--cceEEEEEeccCCcccccCCCCccEEEEEeCCCceeeeecCCCCccccccccceEEE-ecCeeEEEEeecCCCc
Q 016018 214 CQYF--RGACYWILWDKSVGINYNNLVNGDFIFSFDMSDEVFQKLPVPNILNEIDQEFSKLTV-LNESLAFVLRDKYRKS 290 (396)
Q Consensus 214 ~v~~--~G~lywl~~~~~~~~~~~~~~~~~~il~fD~~~e~~~~i~lP~~~~~~~~~~~~l~~-~~g~L~~~~~~~~~~~ 290 (396)
+++. +|.|||..... ..|..+|..+++...+.+|.. . ..... .+|+|.+... ..
T Consensus 5 p~~d~~~g~l~~~D~~~------------~~i~~~~~~~~~~~~~~~~~~---~----G~~~~~~~g~l~v~~~----~~ 61 (246)
T PF08450_consen 5 PVWDPRDGRLYWVDIPG------------GRIYRVDPDTGEVEVIDLPGP---N----GMAFDRPDGRLYVADS----GG 61 (246)
T ss_dssp EEEETTTTEEEEEETTT------------TEEEEEETTTTEEEEEESSSE---E----EEEEECTTSEEEEEET----TC
T ss_pred eEEECCCCEEEEEEcCC------------CEEEEEECCCCeEEEEecCCC---c----eEEEEccCCEEEEEEc----Cc
Confidence 4555 69999986554 489999999999988877761 1 11222 3566654332 12
Q ss_pred cEEEEEEEccCCCCCCeEEEEEecCCC-Cccee--EEEEeCCcEEEEecC---------CeEEEEECCCCcEEEE
Q 016018 291 YEIQIWVMDEFGANEIWKKLFTTEPFC-EIKRP--LSFCERGELIMEDYY---------REACSYNLGTKEIKKL 353 (396)
Q Consensus 291 ~~~~IW~l~~~~~~~~W~~~~~i~~~~-~~~~p--~~~~~~g~il~~~~~---------~~l~~yd~~t~~~~~~ 353 (396)
+.+. + .. ..+++......... ....| +++..+|.+++.... +.++.++.+ ++++.+
T Consensus 62 --~~~~--d-~~-~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~ 129 (246)
T PF08450_consen 62 --IAVV--D-PD-TGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVV 129 (246)
T ss_dssp --EEEE--E-TT-TTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEE
T ss_pred --eEEE--e-cC-CCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEE
Confidence 3333 2 22 35677777663221 22233 566677887776431 458888888 555443
No 70
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=61.04 E-value=1.5e+02 Score=30.05 Aligned_cols=118 Identities=14% Similarity=0.178 Sum_probs=62.4
Q ss_pred ceEEEcceEEEEEeccCCcccccCCCCccEEEEEeCCC--ceeee-ecCCCCccc---cccccceEEEecCeeEEEEeec
Q 016018 213 ECQYFRGACYWILWDKSVGINYNNLVNGDFIFSFDMSD--EVFQK-LPVPNILNE---IDQEFSKLTVLNESLAFVLRDK 286 (396)
Q Consensus 213 ~~v~~~G~lywl~~~~~~~~~~~~~~~~~~il~fD~~~--e~~~~-i~lP~~~~~---~~~~~~~l~~~~g~L~~~~~~~ 286 (396)
.++..+|.+|...... .|.++|..+ +.|+. ...|..... .......++..+|++++....
T Consensus 64 tPvv~~g~vyv~s~~g-------------~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~d- 129 (527)
T TIGR03075 64 QPLVVDGVMYVTTSYS-------------RVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLD- 129 (527)
T ss_pred CCEEECCEEEEECCCC-------------cEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCC-
Confidence 4888999999865443 699999876 45553 233321100 000012234556666553321
Q ss_pred CCCccEEEEEEEccCCCCCCeEEEEEecCCC--C-cceeEEEEeCCcEEEEec------CCeEEEEECCCCcEEEE
Q 016018 287 YRKSYEIQIWVMDEFGANEIWKKLFTTEPFC--E-IKRPLSFCERGELIMEDY------YREACSYNLGTKEIKKL 353 (396)
Q Consensus 287 ~~~~~~~~IW~l~~~~~~~~W~~~~~i~~~~--~-~~~p~~~~~~g~il~~~~------~~~l~~yd~~t~~~~~~ 353 (396)
-.+..|+-...+..|+.... .... . ...|+.. ++.|++-.. .+.++.+|.+|++..+-
T Consensus 130 ------g~l~ALDa~TGk~~W~~~~~-~~~~~~~~tssP~v~--~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~ 196 (527)
T TIGR03075 130 ------ARLVALDAKTGKVVWSKKNG-DYKAGYTITAAPLVV--KGKVITGISGGEFGVRGYVTAYDAKTGKLVWR 196 (527)
T ss_pred ------CEEEEEECCCCCEEeecccc-cccccccccCCcEEE--CCEEEEeecccccCCCcEEEEEECCCCceeEe
Confidence 23556664322556765431 1111 1 1234433 445544322 46899999999987653
No 71
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=55.67 E-value=9.5 Score=24.46 Aligned_cols=22 Identities=5% Similarity=-0.014 Sum_probs=18.4
Q ss_pred CcEEEEcchhhhhccccccccC
Q 016018 121 GRVVLANPAIREFRHLREHCYH 142 (396)
Q Consensus 121 ~~~~V~NP~T~~~~~LP~~~~~ 142 (396)
+.++++||.|++|.+++..|.+
T Consensus 19 nd~~~~~~~~~~W~~~~~~P~~ 40 (49)
T PF13415_consen 19 NDVWVFDLDTNTWTRIGDLPPP 40 (49)
T ss_pred cCEEEEECCCCEEEECCCCCCC
Confidence 3899999999999999766544
No 72
>PF13013 F-box-like_2: F-box-like domain
Probab=53.52 E-value=7.2 Score=30.26 Aligned_cols=29 Identities=28% Similarity=0.192 Sum_probs=23.2
Q ss_pred CCCCcHHHHHHHhhcCCccccccccccch
Q 016018 4 FSDLPEELVFKILVLLPVDSLLCSKCVQK 32 (396)
Q Consensus 4 ~~~LP~Dll~eIL~rLP~~sl~r~r~VcK 32 (396)
+.+||+||++.|+..-....+...-..|+
T Consensus 22 l~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 22 LLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred hhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 56899999999999999888766544444
No 73
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=52.51 E-value=2.1e+02 Score=27.16 Aligned_cols=109 Identities=12% Similarity=0.113 Sum_probs=57.7
Q ss_pred ceEEEcceEEEEEeccCCcccccCCCCccEEEEEeCCCcee-eeecCCCCccccccccceEEEecCeeEEEEeecCCCcc
Q 016018 213 ECQYFRGACYWILWDKSVGINYNNLVNGDFIFSFDMSDEVF-QKLPVPNILNEIDQEFSKLTVLNESLAFVLRDKYRKSY 291 (396)
Q Consensus 213 ~~v~~~G~lywl~~~~~~~~~~~~~~~~~~il~fD~~~e~~-~~i~lP~~~~~~~~~~~~l~~~~g~L~~~~~~~~~~~~ 291 (396)
.++..+|.+|.....+ .|.+||..+++- ...+++.... ...+..++.+++....
T Consensus 60 ~p~v~~~~v~v~~~~g-------------~v~a~d~~tG~~~W~~~~~~~~~------~~p~v~~~~v~v~~~~------ 114 (377)
T TIGR03300 60 QPAVAGGKVYAADADG-------------TVVALDAETGKRLWRVDLDERLS------GGVGADGGLVFVGTEK------ 114 (377)
T ss_pred ceEEECCEEEEECCCC-------------eEEEEEccCCcEeeeecCCCCcc------cceEEcCCEEEEEcCC------
Confidence 3678899988766554 799999765432 2345544211 1233345555432221
Q ss_pred EEEEEEEccCCCCCCeEEEEEecCCCCcceeEEEEeCCcEEEEecCCeEEEEECCCCcEEE
Q 016018 292 EIQIWVMDEFGANEIWKKLFTTEPFCEIKRPLSFCERGELIMEDYYREACSYNLGTKEIKK 352 (396)
Q Consensus 292 ~~~IW~l~~~~~~~~W~~~~~i~~~~~~~~p~~~~~~g~il~~~~~~~l~~yd~~t~~~~~ 352 (396)
=.+..++-...+..|.... .- .....|.. .++.+++...++.++.+|.++++..+
T Consensus 115 -g~l~ald~~tG~~~W~~~~--~~-~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W 169 (377)
T TIGR03300 115 -GEVIALDAEDGKELWRAKL--SS-EVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLW 169 (377)
T ss_pred -CEEEEEECCCCcEeeeecc--Cc-eeecCCEE--ECCEEEEECCCCeEEEEEcCCCceee
Confidence 1244444211145575431 11 11122322 34556665567789999999887654
No 74
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=52.43 E-value=9.9 Score=35.58 Aligned_cols=39 Identities=18% Similarity=0.294 Sum_probs=32.2
Q ss_pred CCCCCCcHHHHHHHhhcCC--------ccccccccccchhhhhhhCC
Q 016018 2 AGFSDLPEELVFKILVLLP--------VDSLLCSKCVQKSWYSLITN 40 (396)
Q Consensus 2 ~~~~~LP~Dll~eIL~rLP--------~~sl~r~r~VcK~W~~li~~ 40 (396)
..|+.||.+++.+|+.|.- =++++.+..|||.|+.+..+
T Consensus 43 ~~~~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~~ 89 (355)
T KOG2502|consen 43 SLWAALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISKE 89 (355)
T ss_pred chhhcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhccc
Confidence 3578999999999999985 12678899999999987654
No 75
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=51.60 E-value=2.2e+02 Score=27.00 Aligned_cols=113 Identities=17% Similarity=0.225 Sum_probs=62.0
Q ss_pred CccEEEEEeCCCceeeeecCCCCccccccccceEE-EecCe-eEEEEeecCCCccEEEEEEEccCCCCCCeEEEEEecCC
Q 016018 239 NGDFIFSFDMSDEVFQKLPVPNILNEIDQEFSKLT-VLNES-LAFVLRDKYRKSYEIQIWVMDEFGANEIWKKLFTTEPF 316 (396)
Q Consensus 239 ~~~~il~fD~~~e~~~~i~lP~~~~~~~~~~~~l~-~~~g~-L~~~~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~i~~~ 316 (396)
....+..+|+++++...+++|......+.-...+. .-++. |.+.-..+..+. +.+...+-.....++.....-...
T Consensus 156 p~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~--~~l~~~d~~tg~~~~~~~e~~~~W 233 (353)
T PF00930_consen 156 PRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNR--LDLVLCDASTGETRVVLEETSDGW 233 (353)
T ss_dssp -EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTE--EEEEEEEECTTTCEEEEEEESSSS
T ss_pred CceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCE--EEEEEEECCCCceeEEEEecCCcc
Confidence 34578899999999888888731111111112222 23555 777777776666 777777643223445554433222
Q ss_pred CCcceeEEEE--eCCcEEEEec---CCeEEEEECCCCcEEEE
Q 016018 317 CEIKRPLSFC--ERGELIMEDY---YREACSYNLGTKEIKKL 353 (396)
Q Consensus 317 ~~~~~p~~~~--~~g~il~~~~---~~~l~~yd~~t~~~~~~ 353 (396)
-....+..+. .+++++++.. ..+|+.||..++..+.+
T Consensus 234 v~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~l 275 (353)
T PF00930_consen 234 VDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQL 275 (353)
T ss_dssp SSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEES
T ss_pred eeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceecc
Confidence 2334455554 3445665532 23799999999987654
No 76
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=51.33 E-value=2.7e+02 Score=29.82 Aligned_cols=30 Identities=10% Similarity=0.058 Sum_probs=23.2
Q ss_pred ceEEEcceEEEEEeccCCcccccCCCCccEEEEEeCCC--ceeee
Q 016018 213 ECQYFRGACYWILWDKSVGINYNNLVNGDFIFSFDMSD--EVFQK 255 (396)
Q Consensus 213 ~~v~~~G~lywl~~~~~~~~~~~~~~~~~~il~fD~~~--e~~~~ 255 (396)
.++.++|.+|.-+..+ .|+++|.++ +.|+.
T Consensus 189 TPlvvgg~lYv~t~~~-------------~V~ALDa~TGk~lW~~ 220 (764)
T TIGR03074 189 TPLKVGDTLYLCTPHN-------------KVIALDAATGKEKWKF 220 (764)
T ss_pred CCEEECCEEEEECCCC-------------eEEEEECCCCcEEEEE
Confidence 5899999999876544 799999875 56653
No 77
>PLN02772 guanylate kinase
Probab=48.80 E-value=1.1e+02 Score=29.62 Aligned_cols=75 Identities=9% Similarity=0.080 Sum_probs=48.9
Q ss_pred ceEEEcceEEEEEeccCCcccccCCCCccEEEEEeCCCceeeeec----CCCCccccccccceEEEecCeeEEEEeecCC
Q 016018 213 ECQYFRGACYWILWDKSVGINYNNLVNGDFIFSFDMSDEVFQKLP----VPNILNEIDQEFSKLTVLNESLAFVLRDKYR 288 (396)
Q Consensus 213 ~~v~~~G~lywl~~~~~~~~~~~~~~~~~~il~fD~~~e~~~~i~----lP~~~~~~~~~~~~l~~~~g~L~~~~~~~~~ 288 (396)
..|.+++.+|.+.... +.......+.+||..+.+|..-. .|.. .+ .+...+.-+++|.++-.....
T Consensus 29 tav~igdk~yv~GG~~------d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~---r~-GhSa~v~~~~rilv~~~~~~~ 98 (398)
T PLN02772 29 TSVTIGDKTYVIGGNH------EGNTLSIGVQILDKITNNWVSPIVLGTGPKP---CK-GYSAVVLNKDRILVIKKGSAP 98 (398)
T ss_pred eeEEECCEEEEEcccC------CCccccceEEEEECCCCcEecccccCCCCCC---CC-cceEEEECCceEEEEeCCCCC
Confidence 5899999999887554 11223568999999999998532 2331 11 233344557888776655433
Q ss_pred CccEEEEEEEcc
Q 016018 289 KSYEIQIWVMDE 300 (396)
Q Consensus 289 ~~~~~~IW~l~~ 300 (396)
+ =+||.|+-
T Consensus 99 ~---~~~w~l~~ 107 (398)
T PLN02772 99 D---DSIWFLEV 107 (398)
T ss_pred c---cceEEEEc
Confidence 3 58999984
No 78
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=47.94 E-value=3.9e+02 Score=28.79 Aligned_cols=58 Identities=16% Similarity=0.165 Sum_probs=32.2
Q ss_pred EEEEEEccCCCCCCeEEEEEec-CC-CCcceeEEEEe-CCcEEEEecCCeEEEEECCCCcE
Q 016018 293 IQIWVMDEFGANEIWKKLFTTE-PF-CEIKRPLSFCE-RGELIMEDYYREACSYNLGTKEI 350 (396)
Q Consensus 293 ~~IW~l~~~~~~~~W~~~~~i~-~~-~~~~~p~~~~~-~g~il~~~~~~~l~~yd~~t~~~ 350 (396)
+.||-+++......|..+..-. .. ..++.-++.+. +|.+++...++.+..|+.++.+.
T Consensus 162 v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~ 222 (933)
T KOG1274|consen 162 VQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWEL 222 (933)
T ss_pred EEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCcee
Confidence 9999999754334454432211 00 11222234444 46777777777788887776543
No 79
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=47.11 E-value=2.6e+02 Score=26.61 Aligned_cols=113 Identities=12% Similarity=0.114 Sum_probs=64.4
Q ss_pred eEEEcceEEEEEeccCCcccccCCCCccEEEEEeCCCce--eeeecCCCCccccccccceEEEecCeeEEEEeecCCCcc
Q 016018 214 CQYFRGACYWILWDKSVGINYNNLVNGDFIFSFDMSDEV--FQKLPVPNILNEIDQEFSKLTVLNESLAFVLRDKYRKSY 291 (396)
Q Consensus 214 ~v~~~G~lywl~~~~~~~~~~~~~~~~~~il~fD~~~e~--~~~i~lP~~~~~~~~~~~~l~~~~g~L~~~~~~~~~~~~ 291 (396)
+++.+|.+|....++ .|.+||.++.+ |+.-..+.. .... .-+...+|+|.+-...
T Consensus 64 ~~~~dg~v~~~~~~G-------------~i~A~d~~~g~~~W~~~~~~~~-~~~~---~~~~~~~G~i~~g~~~------ 120 (370)
T COG1520 64 PADGDGTVYVGTRDG-------------NIFALNPDTGLVKWSYPLLGAV-AQLS---GPILGSDGKIYVGSWD------ 120 (370)
T ss_pred cEeeCCeEEEecCCC-------------cEEEEeCCCCcEEecccCcCcc-eecc---CceEEeCCeEEEeccc------
Confidence 589999999975544 79999998765 654333200 0011 1122337775442222
Q ss_pred EEEEEEEccCCCCCCeEEEEEecCCCCcceeEEEEeCCcEEEEecCCeEEEEECCCCcEEEE
Q 016018 292 EIQIWVMDEFGANEIWKKLFTTEPFCEIKRPLSFCERGELIMEDYYREACSYNLGTKEIKKL 353 (396)
Q Consensus 292 ~~~IW~l~~~~~~~~W~~~~~i~~~~~~~~p~~~~~~g~il~~~~~~~l~~yd~~t~~~~~~ 353 (396)
-.++.|+.......|+....- . ..+..+ .+..++.+++...++++++.|.++.+.++-
T Consensus 121 -g~~y~ld~~~G~~~W~~~~~~-~-~~~~~~-~v~~~~~v~~~s~~g~~~al~~~tG~~~W~ 178 (370)
T COG1520 121 -GKLYALDASTGTLVWSRNVGG-S-PYYASP-PVVGDGTVYVGTDDGHLYALNADTGTLKWT 178 (370)
T ss_pred -ceEEEEECCCCcEEEEEecCC-C-eEEecC-cEEcCcEEEEecCCCeEEEEEccCCcEEEE
Confidence 257777763224667766543 1 111222 223445555544578999999999887764
No 80
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.32 E-value=2.7e+02 Score=26.55 Aligned_cols=140 Identities=14% Similarity=0.158 Sum_probs=77.2
Q ss_pred ceEEEEEcCCCccccccccccccccccccccCCcceEEEcceEEEEEeccCCcccccC-CCCccEEEEEeCCCceeeee-
Q 016018 179 LKVEVYTLSADCWRELVANIDFLGAGTRFLKDNFECQYFRGACYWILWDKSVGINYNN-LVNGDFIFSFDMSDEVFQKL- 256 (396)
Q Consensus 179 ~~~evys~~t~~Wr~~~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~-~~~~~~il~fD~~~e~~~~i- 256 (396)
..+-+|+..++.||.... .++.....+++...|..-++...+- +++ .+......-|.-...+|..+
T Consensus 196 ~ev~sy~p~~n~W~~~G~--------~pf~~~aGsa~~~~~n~~~lInGEi----KpGLRt~~~k~~~~~~~~~~w~~l~ 263 (381)
T COG3055 196 KEVLSYDPSTNQWRNLGE--------NPFYGNAGSAVVIKGNKLTLINGEI----KPGLRTAEVKQADFGGDNLKWLKLS 263 (381)
T ss_pred ccccccccccchhhhcCc--------CcccCccCcceeecCCeEEEEccee----cCCccccceeEEEeccCceeeeecc
Confidence 567788999999999984 2333322346666666555543320 011 12234667777788899877
Q ss_pred cCCCCcccccccc--ceEEEecCeeEEEEeecC------------------CCccEEEEEEEccCCCCCCeEEEEEecCC
Q 016018 257 PVPNILNEIDQEF--SKLTVLNESLAFVLRDKY------------------RKSYEIQIWVMDEFGANEIWKKLFTTEPF 316 (396)
Q Consensus 257 ~lP~~~~~~~~~~--~~l~~~~g~L~~~~~~~~------------------~~~~~~~IW~l~~~~~~~~W~~~~~i~~~ 316 (396)
++|.......... ..-+..+|.+.+...... ....+=+||++++ .+|.....++..
T Consensus 264 ~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d~----g~Wk~~GeLp~~ 339 (381)
T COG3055 264 DLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFDN----GSWKIVGELPQG 339 (381)
T ss_pred CCCCCCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEcC----CceeeecccCCC
Confidence 5555321111110 112344555555443321 1123357888883 679988877652
Q ss_pred CCcceeEEEEeCCcEEEEec
Q 016018 317 CEIKRPLSFCERGELIMEDY 336 (396)
Q Consensus 317 ~~~~~p~~~~~~g~il~~~~ 336 (396)
+..-+.+..++.++++..
T Consensus 340 --l~YG~s~~~nn~vl~IGG 357 (381)
T COG3055 340 --LAYGVSLSYNNKVLLIGG 357 (381)
T ss_pred --ccceEEEecCCcEEEEcc
Confidence 223345556677877753
No 81
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=46.21 E-value=2.7e+02 Score=26.46 Aligned_cols=107 Identities=13% Similarity=0.125 Sum_probs=59.8
Q ss_pred EEEEEeCCCceeeeecCCCCccccccccceEEEecCeeEEEEeecCCCcc------EEEEEEEcc----CCCCCCeEEEE
Q 016018 242 FIFSFDMSDEVFQKLPVPNILNEIDQEFSKLTVLNESLAFVLRDKYRKSY------EIQIWVMDE----FGANEIWKKLF 311 (396)
Q Consensus 242 ~il~fD~~~e~~~~i~lP~~~~~~~~~~~~l~~~~g~L~~~~~~~~~~~~------~~~IW~l~~----~~~~~~W~~~~ 311 (396)
..+.||.++.... .+|.. . ........+..+|+|+++......... .+++-.... ......|+-.-
T Consensus 87 ~t~vyDt~t~av~--~~P~l-~-~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~~~~~~~~~~w~W~~ 162 (342)
T PF07893_consen 87 RTLVYDTDTRAVA--TGPRL-H-SPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRPPPDDPSPEESWSWRS 162 (342)
T ss_pred CeEEEECCCCeEe--ccCCC-C-CCCcceEEEEeCCeEEEeeccCccccccCccceeEEEeccccccccccCCCcceEEc
Confidence 5788998888777 44442 1 122234455668888887776421110 255554441 12245565544
Q ss_pred EecCCC--Cc-------ceeEEEEeCCcEEEE-ecCC--eEEEEECCCCcEEEEe
Q 016018 312 TTEPFC--EI-------KRPLSFCERGELIME-DYYR--EACSYNLGTKEIKKLP 354 (396)
Q Consensus 312 ~i~~~~--~~-------~~p~~~~~~g~il~~-~~~~--~l~~yd~~t~~~~~~~ 354 (396)
+++.+ .. ....++. +|.-|++ .... .-++||.++.+|+++.
T Consensus 163 -LP~PPf~~~~~~~~~~i~sYavv-~g~~I~vS~~~~~~GTysfDt~~~~W~~~G 215 (342)
T PF07893_consen 163 -LPPPPFVRDRRYSDYRITSYAVV-DGRTIFVSVNGRRWGTYSFDTESHEWRKHG 215 (342)
T ss_pred -CCCCCccccCCcccceEEEEEEe-cCCeEEEEecCCceEEEEEEcCCcceeecc
Confidence 44322 10 2234555 6654555 3333 6999999999999874
No 82
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=45.09 E-value=16 Score=32.98 Aligned_cols=40 Identities=28% Similarity=0.284 Sum_probs=31.0
Q ss_pred CCCCCcHHHHHHHhhcCC-ccccccccccchhhhhhhCChH
Q 016018 3 GFSDLPEELVFKILVLLP-VDSLLCSKCVQKSWYSLITNSR 42 (396)
Q Consensus 3 ~~~~LP~Dll~eIL~rLP-~~sl~r~r~VcK~W~~li~~~~ 42 (396)
++.+||.+++.+||.||| -.+|.....|--.-..++.+..
T Consensus 201 tl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~ 241 (332)
T KOG3926|consen 201 TLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERR 241 (332)
T ss_pred CcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHH
Confidence 467899999999999999 7788887777655555555544
No 83
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=42.73 E-value=3e+02 Score=26.07 Aligned_cols=120 Identities=13% Similarity=0.158 Sum_probs=0.0
Q ss_pred cceEEEEEeccCCcccccCCCCccEEEEEeCCCceeeee---cCCCCccccccccceEEEecCeeEEEEeecCCCccEEE
Q 016018 218 RGACYWILWDKSVGINYNNLVNGDFIFSFDMSDEVFQKL---PVPNILNEIDQEFSKLTVLNESLAFVLRDKYRKSYEIQ 294 (396)
Q Consensus 218 ~G~lywl~~~~~~~~~~~~~~~~~~il~fD~~~e~~~~i---~lP~~~~~~~~~~~~l~~~~g~L~~~~~~~~~~~~~~~ 294 (396)
+|.+-|...-+ ...|..||+++.+.... .+++..+..+..+.- +|+++++..--..+ +.
T Consensus 155 ~~~~l~v~DLG-----------~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHp----n~k~aY~v~EL~st---V~ 216 (346)
T COG2706 155 DGRYLVVPDLG-----------TDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHP----NGKYAYLVNELNST---VD 216 (346)
T ss_pred CCCEEEEeecC-----------CceEEEEEcccCccccccccccCCCCCcceEEEcC----CCcEEEEEeccCCE---EE
Q ss_pred EEEEccCCCCCCeEEEEEecCCC------CcceeEEEEeCCcEEEEecCC----eEEEEECCCCcEEEEeecC
Q 016018 295 IWVMDEFGANEIWKKLFTTEPFC------EIKRPLSFCERGELIMEDYYR----EACSYNLGTKEIKKLPVLP 357 (396)
Q Consensus 295 IW~l~~~~~~~~W~~~~~i~~~~------~~~~p~~~~~~g~il~~~~~~----~l~~yd~~t~~~~~~~~~~ 357 (396)
+|..+... .+-..+-+|...+ ....-+.+..+|..|...+.+ .++.-|..+++++-+....
T Consensus 217 v~~y~~~~--g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~ 287 (346)
T COG2706 217 VLEYNPAV--GKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITP 287 (346)
T ss_pred EEEEcCCC--ceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEec
No 84
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=42.41 E-value=40 Score=20.38 Aligned_cols=21 Identities=10% Similarity=0.072 Sum_probs=14.9
Q ss_pred eCCcEEEEecCCeEEEEECCC
Q 016018 327 ERGELIMEDYYREACSYNLGT 347 (396)
Q Consensus 327 ~~g~il~~~~~~~l~~yd~~t 347 (396)
.+|.+++...+++++++|.+|
T Consensus 20 ~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 20 AGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp CTSEEEEE-TTSEEEEEETT-
T ss_pred ECCEEEEEcCCCEEEEEeCCC
Confidence 456666666789999999875
No 85
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=40.56 E-value=3.3e+02 Score=25.87 Aligned_cols=25 Identities=12% Similarity=0.008 Sum_probs=18.1
Q ss_pred CCcEEEEecCCeEEEEECCCCcEEE
Q 016018 328 RGELIMEDYYREACSYNLGTKEIKK 352 (396)
Q Consensus 328 ~g~il~~~~~~~l~~yd~~t~~~~~ 352 (396)
++.+++...++.++.+|+++++..+
T Consensus 190 ~~~v~~~~~~g~v~ald~~tG~~~W 214 (377)
T TIGR03300 190 DGGVLVGFAGGKLVALDLQTGQPLW 214 (377)
T ss_pred CCEEEEECCCCEEEEEEccCCCEee
Confidence 3555555556789999999987654
No 86
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.03 E-value=1.4e+02 Score=28.47 Aligned_cols=126 Identities=17% Similarity=0.196 Sum_probs=72.2
Q ss_pred ceEEEEEcCCCccccccccccccccccccccCCcceEEEcc-eEEEEEeccC-----------------Cccc-------
Q 016018 179 LKVEVYTLSADCWRELVANIDFLGAGTRFLKDNFECQYFRG-ACYWILWDKS-----------------VGIN------- 233 (396)
Q Consensus 179 ~~~evys~~t~~Wr~~~~~~~~~~~~~~~~~~~~~~v~~~G-~lywl~~~~~-----------------~~~~------- 233 (396)
..+..|+..+++|..+++. .|.. +... ..+..+| .+|+...-.. +..+
T Consensus 113 nd~Y~y~p~~nsW~kl~t~-----sP~g-l~G~-~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf 185 (381)
T COG3055 113 NDAYRYDPSTNSWHKLDTR-----SPTG-LVGA-STFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYF 185 (381)
T ss_pred eeeEEecCCCChhheeccc-----cccc-cccc-eeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHh
Confidence 4677889999999998852 2222 2222 2445555 5555532110 0000
Q ss_pred ---ccCCCCccEEEEEeCCCceeeeec-CCCCccccccccceEEEecCeeEEEEeecCCCccEEEEEEEccCCCCCCeEE
Q 016018 234 ---YNNLVNGDFIFSFDMSDEVFQKLP-VPNILNEIDQEFSKLTVLNESLAFVLRDKYRKSYEIQIWVMDEFGANEIWKK 309 (396)
Q Consensus 234 ---~~~~~~~~~il~fD~~~e~~~~i~-lP~~~~~~~~~~~~l~~~~g~L~~~~~~~~~~~~~~~IW~l~~~~~~~~W~~ 309 (396)
..+-.....+++||.++++|+..- .|.. .... ...+..+++|.++...-...-++-++|+.+-.+++..|.+
T Consensus 186 ~~~~~dy~~n~ev~sy~p~~n~W~~~G~~pf~-~~aG---sa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~ 261 (381)
T COG3055 186 DKKAEDYFFNKEVLSYDPSTNQWRNLGENPFY-GNAG---SAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLK 261 (381)
T ss_pred CCCHHHhcccccccccccccchhhhcCcCccc-CccC---cceeecCCeEEEEcceecCCccccceeEEEeccCceeeee
Confidence 011122457899999999999874 6652 1111 2334456668888775432222377888775445678999
Q ss_pred EEEecC
Q 016018 310 LFTTEP 315 (396)
Q Consensus 310 ~~~i~~ 315 (396)
.-..+.
T Consensus 262 l~~lp~ 267 (381)
T COG3055 262 LSDLPA 267 (381)
T ss_pred ccCCCC
Confidence 866654
No 87
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=37.21 E-value=3.5e+02 Score=25.26 Aligned_cols=106 Identities=15% Similarity=0.111 Sum_probs=57.7
Q ss_pred ceEEEEEeccCCcccccCCCCccEEEEEeCCCceeeeecCCCCccccccccceEEEecCeeEEEEeecCCCccEEEEEEE
Q 016018 219 GACYWILWDKSVGINYNNLVNGDFIFSFDMSDEVFQKLPVPNILNEIDQEFSKLTVLNESLAFVLRDKYRKSYEIQIWVM 298 (396)
Q Consensus 219 G~lywl~~~~~~~~~~~~~~~~~~il~fD~~~e~~~~i~lP~~~~~~~~~~~~l~~~~g~L~~~~~~~~~~~~~~~IW~l 298 (396)
+++||....+ ..|+.+|..+.+-+.++.|... ....+...+|.|.. +.. . +.++..
T Consensus 37 ~~L~w~DI~~------------~~i~r~~~~~g~~~~~~~p~~~-----~~~~~~d~~g~Lv~-~~~----g--~~~~~~ 92 (307)
T COG3386 37 GALLWVDILG------------GRIHRLDPETGKKRVFPSPGGF-----SSGALIDAGGRLIA-CEH----G--VRLLDP 92 (307)
T ss_pred CEEEEEeCCC------------CeEEEecCCcCceEEEECCCCc-----ccceeecCCCeEEE-Ecc----c--cEEEec
Confidence 5678876655 4899999999999999988842 11223344444432 221 1 334444
Q ss_pred ccCCCCCCeEEEEEecCCCCccee--EEEEeCCcEEEEecC------------CeEEEEECCCCcEE
Q 016018 299 DEFGANEIWKKLFTTEPFCEIKRP--LSFCERGELIMEDYY------------REACSYNLGTKEIK 351 (396)
Q Consensus 299 ~~~~~~~~W~~~~~i~~~~~~~~p--~~~~~~g~il~~~~~------------~~l~~yd~~t~~~~ 351 (396)
+. ...|+....+.......+| ..+..+|.++|-... +.++.+|+..++.+
T Consensus 93 ~~---~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~ 156 (307)
T COG3386 93 DT---GGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVR 156 (307)
T ss_pred cC---CceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEE
Confidence 22 2344444443321111122 445566777776433 25888898544444
No 88
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=33.85 E-value=2.3e+02 Score=27.87 Aligned_cols=61 Identities=21% Similarity=0.186 Sum_probs=37.6
Q ss_pred EEEEEEccCCCCCCeEEEEEecCCCCcceeEEEEeCCc-EEEEec-CCeEEEEECCCCcEEEEeecC
Q 016018 293 IQIWVMDEFGANEIWKKLFTTEPFCEIKRPLSFCERGE-LIMEDY-YREACSYNLGTKEIKKLPVLP 357 (396)
Q Consensus 293 ~~IW~l~~~~~~~~W~~~~~i~~~~~~~~p~~~~~~g~-il~~~~-~~~l~~yd~~t~~~~~~~~~~ 357 (396)
+.|..++..- . .+..+|-+...-..-..+..+|. .++... ..-++.||+++.++.++....
T Consensus 237 lrifqvDGk~--N--~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~ 299 (514)
T KOG2055|consen 237 LRIFQVDGKV--N--PKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPY 299 (514)
T ss_pred EEEEEecCcc--C--hhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCC
Confidence 8888888532 2 25555543211112234556776 555543 345999999999999987554
No 89
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=33.29 E-value=3.6e+02 Score=24.27 Aligned_cols=126 Identities=13% Similarity=0.142 Sum_probs=68.7
Q ss_pred ceEEEcceEEEEEeccCCcccccCCCCccEEEEEeCCCce-eeeecCCCCccc-------cccccceEEEecCeeEEEEe
Q 016018 213 ECQYFRGACYWILWDKSVGINYNNLVNGDFIFSFDMSDEV-FQKLPVPNILNE-------IDQEFSKLTVLNESLAFVLR 284 (396)
Q Consensus 213 ~~v~~~G~lywl~~~~~~~~~~~~~~~~~~il~fD~~~e~-~~~i~lP~~~~~-------~~~~~~~l~~~~g~L~~~~~ 284 (396)
..|..||++|...... ..|+.||++++. .....+|..... .+.....+++.+.-|-++-.
T Consensus 72 g~VVynGs~yynk~~t------------~~ivky~l~~~~~~~~~~lp~a~y~~~~~y~~~g~sdiD~avDE~GLWviYa 139 (249)
T KOG3545|consen 72 GHVVYNGSLYYNKAGT------------RNIIKYDLETRTVAGSAALPYAGYHNPSPYYWGGHSDIDLAVDENGLWVIYA 139 (249)
T ss_pred ceEEEcceEEeeccCC------------cceEEEEeecceeeeeeeccccccCCCcccccCCCccccceecccceeEEec
Confidence 4899999999976443 589999999853 344556653111 11122456665555666655
Q ss_pred ecCCCccEEEEEEEccC--CCCCCeEEEEEecCCCCcceeEEEEeCCcEEEEec----CCeE-EEEECCCCcEEEEeec
Q 016018 285 DKYRKSYEIQIWVMDEF--GANEIWKKLFTTEPFCEIKRPLSFCERGELIMEDY----YREA-CSYNLGTKEIKKLPVL 356 (396)
Q Consensus 285 ~~~~~~~~~~IW~l~~~--~~~~~W~~~~~i~~~~~~~~p~~~~~~g~il~~~~----~~~l-~~yd~~t~~~~~~~~~ 356 (396)
..+.+. .+.|=.|+.. .....|.-.+.= .... =++.-+|-++.+.. ...+ +.||..+++-+.+.++
T Consensus 140 t~~~~g-~iv~skLdp~tl~~e~tW~T~~~k---~~~~--~aF~iCGvLY~v~S~~~~~~~i~yaydt~~~~~~~~~ip 212 (249)
T KOG3545|consen 140 TPENAG-TIVLSKLDPETLEVERTWNTTLPK---RSAG--NAFMICGVLYVVHSYNCTHTQISYAYDTTTGTQERIDLP 212 (249)
T ss_pred ccccCC-cEEeeccCHHHhheeeeeccccCC---CCcC--ceEEEeeeeEEEeccccCCceEEEEEEcCCCceeccccc
Confidence 544332 2555666642 112334221110 0111 12334466666543 2233 7999999988776654
No 90
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=30.86 E-value=1.6e+02 Score=23.19 Aligned_cols=31 Identities=13% Similarity=0.320 Sum_probs=23.3
Q ss_pred EeCCcEEEEec-----CCeEEEEECCCCcEEEEeec
Q 016018 326 CERGELIMEDY-----YREACSYNLGTKEIKKLPVL 356 (396)
Q Consensus 326 ~~~g~il~~~~-----~~~l~~yd~~t~~~~~~~~~ 356 (396)
.-||-++.... ...++++|+++.+++.+..+
T Consensus 3 cinGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~~P 38 (129)
T PF08268_consen 3 CINGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIKLP 38 (129)
T ss_pred EECcEEEeEEEECCCCCcEEEEEEcCCceEEEEEee
Confidence 34666665533 35799999999999998875
No 91
>PF15408 PH_7: Pleckstrin homology domain
Probab=30.18 E-value=21 Score=26.05 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=18.8
Q ss_pred cccccccccchhhhhhhCChHHH
Q 016018 22 DSLLCSKCVQKSWYSLITNSRFV 44 (396)
Q Consensus 22 ~sl~r~r~VcK~W~~li~~~~F~ 44 (396)
+-.+..+-|||+|-....+|+|.
T Consensus 77 ~~FA~S~~~~~~Wi~~mN~~s~~ 99 (104)
T PF15408_consen 77 QCFASSKKVCQSWIQVMNSPSFR 99 (104)
T ss_pred hhhhhHHHHHHHHHHHhcChhhh
Confidence 44555677999999999999985
No 92
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=28.60 E-value=7.3e+02 Score=26.33 Aligned_cols=125 Identities=12% Similarity=0.157 Sum_probs=66.8
Q ss_pred ceEEEcceEEEEEeccCCcccccCCCCccEEEEEeCCCceeeeecCCCCcccc----c-cccceEE-E-ecCeeEEEEee
Q 016018 213 ECQYFRGACYWILWDKSVGINYNNLVNGDFIFSFDMSDEVFQKLPVPNILNEI----D-QEFSKLT-V-LNESLAFVLRD 285 (396)
Q Consensus 213 ~~v~~~G~lywl~~~~~~~~~~~~~~~~~~il~fD~~~e~~~~i~lP~~~~~~----~-~~~~~l~-~-~~g~L~~~~~~ 285 (396)
..++..+.-||+..... .-.+-.-.....+++.+++++.|....+|....-+ . .....++ . -++-|++-|..
T Consensus 250 ~~~~~k~~k~~ln~~~~-kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~k 328 (893)
T KOG0291|consen 250 KIFWYKTKKHYLNQNSS-KVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSK 328 (893)
T ss_pred ceEEEEEEeeeeccccc-ceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCc
Confidence 46888888898875431 00011112345899999999999999999851100 0 0001111 1 13444443332
Q ss_pred cCCCccEEEEEEEccCCCCCCeEEEEEecCCCCcceeEEEEeCCcEEEEec-CCeEEEEECCCC
Q 016018 286 KYRKSYEIQIWVMDEFGANEIWKKLFTTEPFCEIKRPLSFCERGELIMEDY-YREACSYNLGTK 348 (396)
Q Consensus 286 ~~~~~~~~~IW~l~~~~~~~~W~~~~~i~~~~~~~~p~~~~~~g~il~~~~-~~~l~~yd~~t~ 348 (396)
-.. +-||..+. ++.+.+.. .+... ...+++..||.++.... ++++-.||..++
T Consensus 329 --lgQ--LlVweWqs----EsYVlKQQ-gH~~~-i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sg 382 (893)
T KOG0291|consen 329 --LGQ--LLVWEWQS----ESYVLKQQ-GHSDR-ITSLAYSPDGQLIATGAEDGKVKVWNTQSG 382 (893)
T ss_pred --cce--EEEEEeec----cceeeecc-ccccc-eeeEEECCCCcEEEeccCCCcEEEEeccCc
Confidence 223 88998874 22222221 01111 23466677777766643 556777777664
No 93
>PF06058 DCP1: Dcp1-like decapping family; InterPro: IPR010334 An essential step in mRNA turnover is decapping. In yeast, two proteins have been identified that are essential for decapping, Dcp1 (this family) and Dcp2 (IPR007722 from INTERPRO). The precise role of these proteins in the decapping reaction has not been established. Evidence suggests that the Dcp1 may enhance the function of Dcp2 [].; PDB: 1Q67_A 2QKM_C 2QKL_A.
Probab=28.10 E-value=82 Score=24.97 Aligned_cols=29 Identities=10% Similarity=0.053 Sum_probs=22.5
Q ss_pred cEEEEecCCeEEEEECCCCcEEEEeecCc
Q 016018 330 ELIMEDYYREACSYNLGTKEIKKLPVLPC 358 (396)
Q Consensus 330 ~il~~~~~~~l~~yd~~t~~~~~~~~~~~ 358 (396)
+|+.....-.++.||.++++|++.+++|.
T Consensus 21 ~Il~~a~~v~vY~f~~~~~~W~K~~iEG~ 49 (122)
T PF06058_consen 21 SILDTASHVVVYKFDHETNEWEKTDIEGT 49 (122)
T ss_dssp EEEEEEEEEEEEEEETTTTEEEEEEEEEE
T ss_pred HHHhhCCeEEEEeecCCCCcEeecCcEee
Confidence 45555555568888899999999999985
No 94
>PLN00181 protein SPA1-RELATED; Provisional
Probab=26.16 E-value=8.3e+02 Score=26.14 Aligned_cols=101 Identities=9% Similarity=0.099 Sum_probs=52.2
Q ss_pred cEEEEEeCCCceeeeecCCCCccccccccceEEEecCeeEEEEeecCCCccEEEEEEEccCCCCCCeEEEEEecCCCCcc
Q 016018 241 DFIFSFDMSDEVFQKLPVPNILNEIDQEFSKLTVLNESLAFVLRDKYRKSYEIQIWVMDEFGANEIWKKLFTTEPFCEIK 320 (396)
Q Consensus 241 ~~il~fD~~~e~~~~i~lP~~~~~~~~~~~~l~~~~g~L~~~~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~i~~~~~~~ 320 (396)
..|..+|+.+.+-....+.. +......+.-.++...+.+. . ..+ +.||-+........|...+.+.-.....
T Consensus 640 g~I~iwD~~~~~~~~~~~~~----h~~~V~~v~f~~~~~lvs~s-~-D~~--ikiWd~~~~~~~~~~~~l~~~~gh~~~i 711 (793)
T PLN00181 640 HKVYYYDLRNPKLPLCTMIG----HSKTVSYVRFVDSSTLVSSS-T-DNT--LKLWDLSMSISGINETPLHSFMGHTNVK 711 (793)
T ss_pred CeEEEEECCCCCccceEecC----CCCCEEEEEEeCCCEEEEEE-C-CCE--EEEEeCCCCccccCCcceEEEcCCCCCe
Confidence 47888998765321111111 11111223333555433333 2 245 9999987532123466666554322222
Q ss_pred eeEEEEeCCcEEEEe-cCCeEEEEECCCCc
Q 016018 321 RPLSFCERGELIMED-YYREACSYNLGTKE 349 (396)
Q Consensus 321 ~p~~~~~~g~il~~~-~~~~l~~yd~~t~~ 349 (396)
..+++..++..+... .++.+..||..+..
T Consensus 712 ~~v~~s~~~~~lasgs~D~~v~iw~~~~~~ 741 (793)
T PLN00181 712 NFVGLSVSDGYIATGSETNEVFVYHKAFPM 741 (793)
T ss_pred eEEEEcCCCCEEEEEeCCCEEEEEECCCCC
Confidence 335566666666554 46789999977653
No 95
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=24.90 E-value=1.6e+02 Score=26.49 Aligned_cols=28 Identities=7% Similarity=0.045 Sum_probs=24.1
Q ss_pred eCCcEEEEecCCeEEEEECCCCcEEEEe
Q 016018 327 ERGELIMEDYYREACSYNLGTKEIKKLP 354 (396)
Q Consensus 327 ~~g~il~~~~~~~l~~yd~~t~~~~~~~ 354 (396)
..+.|++...+..++..|++++++++..
T Consensus 125 ~enSi~~AgGD~~~y~~dlE~G~i~r~~ 152 (325)
T KOG0649|consen 125 SENSILFAGGDGVIYQVDLEDGRIQREY 152 (325)
T ss_pred CCCcEEEecCCeEEEEEEecCCEEEEEE
Confidence 5678889888889999999999998764
No 96
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=24.57 E-value=8.3e+02 Score=25.58 Aligned_cols=88 Identities=13% Similarity=0.200 Sum_probs=51.1
Q ss_pred cEEEEEeCCCceeeeecCCCCccccccccceEE-EecCeeEEEEeecCCCccEEEEEEEccCCCCCCeEEEEEecCCCCc
Q 016018 241 DFIFSFDMSDEVFQKLPVPNILNEIDQEFSKLT-VLNESLAFVLRDKYRKSYEIQIWVMDEFGANEIWKKLFTTEPFCEI 319 (396)
Q Consensus 241 ~~il~fD~~~e~~~~i~lP~~~~~~~~~~~~l~-~~~g~L~~~~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~i~~~~~~ 319 (396)
..|.--|+..|...++..-. ...+ .+. ..++.+.+-|. +..+ ++||.-++ ..-.|.++.--
T Consensus 200 g~Ir~w~~~ge~l~~~~ght-----n~vY-sis~~~~~~~Ivs~g--EDrt--lriW~~~e--------~~q~I~lPtts 261 (745)
T KOG0301|consen 200 GSIRLWDLDGEVLLEMHGHT-----NFVY-SISMALSDGLIVSTG--EDRT--LRIWKKDE--------CVQVITLPTTS 261 (745)
T ss_pred ceEEEEeccCceeeeeeccc-----eEEE-EEEecCCCCeEEEec--CCce--EEEeecCc--------eEEEEecCccc
Confidence 46777777777766543211 1111 222 34555555443 3355 99998763 34556554322
Q ss_pred ceeEEEEeCCcEEEEecCCeEEEEECC
Q 016018 320 KRPLSFCERGELIMEDYYREACSYNLG 346 (396)
Q Consensus 320 ~~p~~~~~~g~il~~~~~~~l~~yd~~ 346 (396)
.....+..+|+|+.-..++.+..|-.+
T Consensus 262 iWsa~~L~NgDIvvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 262 IWSAKVLLNGDIVVGGSDGRVRVFTVD 288 (745)
T ss_pred eEEEEEeeCCCEEEeccCceEEEEEec
Confidence 344667788999888888877776544
No 97
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=24.26 E-value=2.7e+02 Score=29.52 Aligned_cols=55 Identities=18% Similarity=0.399 Sum_probs=39.5
Q ss_pred EEEEEEccCC----CCCCeEEEEEecCCCCc-ceeEEEEeCCcEEEEecCCeEEEEECCCC
Q 016018 293 IQIWVMDEFG----ANEIWKKLFTTEPFCEI-KRPLSFCERGELIMEDYYREACSYNLGTK 348 (396)
Q Consensus 293 ~~IW~l~~~~----~~~~W~~~~~i~~~~~~-~~p~~~~~~g~il~~~~~~~l~~yd~~t~ 348 (396)
+.||++.+.. ....|+.+. |...... ....++.+||.++....++.+-.||..++
T Consensus 481 ~KiW~~~~~~n~~k~~s~W~c~~-i~sy~k~~i~a~~fs~dGslla~s~~~~Itiwd~~~~ 540 (792)
T KOG1963|consen 481 FKIWVFTDDSNIYKKSSNWTCKA-IGSYHKTPITALCFSQDGSLLAVSFDDTITIWDYDTK 540 (792)
T ss_pred EEEEEEecccccCcCccceEEee-eeccccCcccchhhcCCCcEEEEecCCEEEEecCCCh
Confidence 9999996542 234698876 4433211 23356778999999999999999999994
No 98
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=23.58 E-value=1.7e+02 Score=29.04 Aligned_cols=54 Identities=11% Similarity=0.272 Sum_probs=38.8
Q ss_pred EEEEEEccCCCCCCeEEEEEecCCCCcceeEEEEeCCcEEEE--ecCCeEEEEECCCCcEE
Q 016018 293 IQIWVMDEFGANEIWKKLFTTEPFCEIKRPLSFCERGELIME--DYYREACSYNLGTKEIK 351 (396)
Q Consensus 293 ~~IW~l~~~~~~~~W~~~~~i~~~~~~~~p~~~~~~g~il~~--~~~~~l~~yd~~t~~~~ 351 (396)
+.+|-.+.......|.+.|.-+. +-+++...++.|+. +.+.+++.||..+++..
T Consensus 189 VtlwDv~g~sp~~~~~~~HsAP~-----~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~ 244 (673)
T KOG4378|consen 189 VTLWDVQGMSPIFHASEAHSAPC-----RGICFSPSNEALLVSVGYDKKINIYDIRSQAST 244 (673)
T ss_pred EEEEeccCCCcccchhhhccCCc-----CcceecCCccceEEEecccceEEEeeccccccc
Confidence 99999887655667988887653 23556655565554 45789999999988653
No 99
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=22.96 E-value=6.2e+02 Score=23.59 Aligned_cols=106 Identities=13% Similarity=0.124 Sum_probs=54.2
Q ss_pred cEEEEEeCCCceeeeecCCCCccccccccceEEEecCeeEEEEeecCCCccEEEEEEEccCCCCCCeEEEEEecCCCCcc
Q 016018 241 DFIFSFDMSDEVFQKLPVPNILNEIDQEFSKLTVLNESLAFVLRDKYRKSYEIQIWVMDEFGANEIWKKLFTTEPFCEIK 320 (396)
Q Consensus 241 ~~il~fD~~~e~~~~i~lP~~~~~~~~~~~~l~~~~g~L~~~~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~i~~~~~~~ 320 (396)
..|..+|+.+..-..+.--. .....+.-.-+.=+++...-+ ++ +.+|-.... ..+.....-.
T Consensus 75 g~vr~~Dln~~~~~~igth~------~~i~ci~~~~~~~~vIsgsWD-~~--ik~wD~R~~---------~~~~~~d~~k 136 (323)
T KOG1036|consen 75 GQVRRYDLNTGNEDQIGTHD------EGIRCIEYSYEVGCVISGSWD-KT--IKFWDPRNK---------VVVGTFDQGK 136 (323)
T ss_pred ceEEEEEecCCcceeeccCC------CceEEEEeeccCCeEEEcccC-cc--EEEEecccc---------ccccccccCc
Confidence 37889998876544432111 111112222222334444433 45 888877631 1111111111
Q ss_pred eeEEEEeCCcEEEE-ecCCeEEEEECCCCcEEEEeecCcccccccc
Q 016018 321 RPLSFCERGELIME-DYYREACSYNLGTKEIKKLPVLPCTLKIQDK 365 (396)
Q Consensus 321 ~p~~~~~~g~il~~-~~~~~l~~yd~~t~~~~~~~~~~~~~~~~~~ 365 (396)
...++.-.|++|++ ..++++..||+++...-. .+....++||.|
T Consensus 137 kVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~-q~reS~lkyqtR 181 (323)
T KOG1036|consen 137 KVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEPF-QRRESSLKYQTR 181 (323)
T ss_pred eEEEEeccCCEEEEeecCceEEEEEcccccchh-hhccccceeEEE
Confidence 44555555666666 567889999999876432 333335666665
No 100
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=22.74 E-value=5.4e+02 Score=27.09 Aligned_cols=99 Identities=15% Similarity=0.199 Sum_probs=62.4
Q ss_pred eeCceEEEeEcCCcEEEEcchhhhhccccccccCCCCcceeEEEEEEecCCCCeEEEEEEEEeCCCCcccceEEEEEcCC
Q 016018 109 HCHGIVCFALLSGRVVLANPAIREFRHLREHCYHSFSYWMGCVGFGYDVKSNDYKVVRILCISDGSGLCHLKVEVYTLSA 188 (396)
Q Consensus 109 sc~GLlc~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~yKVv~~~~~~~~~~~~~~~~evys~~t 188 (396)
|-|++||-+..+.++-+|.|-++++..+-.-+ ..+....|.|..++|=+=.-- .-.++|.+.-.
T Consensus 378 SKn~fLLSSSMDKTVRLWh~~~~~CL~~F~Hn-------dfVTcVaFnPvDDryFiSGSL---------D~KvRiWsI~d 441 (712)
T KOG0283|consen 378 SKNNFLLSSSMDKTVRLWHPGRKECLKVFSHN-------DFVTCVAFNPVDDRYFISGSL---------DGKVRLWSISD 441 (712)
T ss_pred ccCCeeEeccccccEEeecCCCcceeeEEecC-------CeeEEEEecccCCCcEeeccc---------ccceEEeecCc
Confidence 67899988888889999999999998875331 234456789998888543321 25677777766
Q ss_pred C---ccccccccccccccccccccCCcceEEE---cceEEEEEecc
Q 016018 189 D---CWRELVANIDFLGAGTRFLKDNFECQYF---RGACYWILWDK 228 (396)
Q Consensus 189 ~---~Wr~~~~~~~~~~~~~~~~~~~~~~v~~---~G~lywl~~~~ 228 (396)
. -|..+... -...-+.+.+ .++.+ +|.++++...+
T Consensus 442 ~~Vv~W~Dl~~l----ITAvcy~PdG-k~avIGt~~G~C~fY~t~~ 482 (712)
T KOG0283|consen 442 KKVVDWNDLRDL----ITAVCYSPDG-KGAVIGTFNGYCRFYDTEG 482 (712)
T ss_pred CeeEeehhhhhh----heeEEeccCC-ceEEEEEeccEEEEEEccC
Confidence 4 47766631 1111122333 35554 57777766544
No 101
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=21.66 E-value=5.6e+02 Score=22.58 Aligned_cols=105 Identities=10% Similarity=0.106 Sum_probs=55.7
Q ss_pred cEEEEEeCCCcee-eeecC--CCCccccccccceE-EEecCeeEEEEeecCCCccEEEEEEEccCCCCCCeEEEEEecCC
Q 016018 241 DFIFSFDMSDEVF-QKLPV--PNILNEIDQEFSKL-TVLNESLAFVLRDKYRKSYEIQIWVMDEFGANEIWKKLFTTEPF 316 (396)
Q Consensus 241 ~~il~fD~~~e~~-~~i~l--P~~~~~~~~~~~~l-~~~~g~L~~~~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~i~~~ 316 (396)
..|..+|+++.+. ..+.. |.. .........+ ..-+|+..++.... .+. +.||-++. |.....+...
T Consensus 179 ~~v~i~d~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~s~dg~~~~~~~~~-~~~--i~v~d~~~------~~~~~~~~~~ 248 (300)
T TIGR03866 179 GTVSVIDVATRKVIKKITFEIPGV-HPEAVQPVGIKLTKDGKTAFVALGP-ANR--VAVVDAKT------YEVLDYLLVG 248 (300)
T ss_pred CEEEEEEcCcceeeeeeeeccccc-ccccCCccceEECCCCCEEEEEcCC-CCe--EEEEECCC------CcEEEEEEeC
Confidence 3688899987654 33322 210 0000011112 23456654444332 244 88886543 4444433222
Q ss_pred CCcceeEEEEeCCcEEEEe--cCCeEEEEECCCCcE-EEEeec
Q 016018 317 CEIKRPLSFCERGELIMED--YYREACSYNLGTKEI-KKLPVL 356 (396)
Q Consensus 317 ~~~~~p~~~~~~g~il~~~--~~~~l~~yd~~t~~~-~~~~~~ 356 (396)
. ....+.+..+|+.|+.. .++.+..||+++.+. +.+.+.
T Consensus 249 ~-~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~ 290 (300)
T TIGR03866 249 Q-RVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG 290 (300)
T ss_pred C-CcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc
Confidence 1 22346677888777664 367899999999985 556543
No 102
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=21.57 E-value=3.4e+02 Score=24.96 Aligned_cols=100 Identities=13% Similarity=0.175 Sum_probs=61.5
Q ss_pred EEEEEeCCCceeeeecCCCCccccccccceE-EEecCeeEEEEeecCCCccEEEEEEEccCCCCCCeEEEEEecCCCCcc
Q 016018 242 FIFSFDMSDEVFQKLPVPNILNEIDQEFSKL-TVLNESLAFVLRDKYRKSYEIQIWVMDEFGANEIWKKLFTTEPFCEIK 320 (396)
Q Consensus 242 ~il~fD~~~e~~~~i~lP~~~~~~~~~~~~l-~~~~g~L~~~~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~i~~~~~~~ 320 (396)
.+-.-|+++-+... ..|. +.... ..+ +.-+|.||...... .. +-+|-|.+.. . .|+++... ..
T Consensus 173 tvKvWnl~~~~l~~-~~~g---h~~~v-~t~~vSpDGslcasGgkd--g~--~~LwdL~~~k--~----lysl~a~~-~v 236 (315)
T KOG0279|consen 173 TVKVWNLRNCQLRT-TFIG---HSGYV-NTVTVSPDGSLCASGGKD--GE--AMLWDLNEGK--N----LYSLEAFD-IV 236 (315)
T ss_pred eEEEEccCCcchhh-cccc---ccccE-EEEEECCCCCEEecCCCC--ce--EEEEEccCCc--e----eEeccCCC-eE
Confidence 56666776654432 1222 11111 223 34589998654332 33 8999999742 1 66666553 33
Q ss_pred eeEEEEeCCcEEEEecCCeEEEEECCCCcE-EEEeecC
Q 016018 321 RPLSFCERGELIMEDYYREACSYNLGTKEI-KKLPVLP 357 (396)
Q Consensus 321 ~p~~~~~~g~il~~~~~~~l~~yd~~t~~~-~~~~~~~ 357 (396)
..+++.++...|....+..+-.+|++++.. +.+..++
T Consensus 237 ~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~ 274 (315)
T KOG0279|consen 237 NSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLDG 274 (315)
T ss_pred eeEEecCCceeEeeccCCceEEEeccchhhhhhccccc
Confidence 567888887777777788899999999964 5555544
No 103
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=20.68 E-value=2.2e+02 Score=25.49 Aligned_cols=55 Identities=16% Similarity=0.168 Sum_probs=37.0
Q ss_pred eeCceEEEeEcCCcEEEEcchhhhhccc--cccccCCCCcceeEEEEEEecCCCCeEEEE
Q 016018 109 HCHGIVCFALLSGRVVLANPAIREFRHL--REHCYHSFSYWMGCVGFGYDVKSNDYKVVR 166 (396)
Q Consensus 109 sc~GLlc~~~~~~~~~V~NP~T~~~~~L--P~~~~~~~~~~~~~~~~g~d~~~~~yKVv~ 166 (396)
..+|.|--....+++|..||.|+.-..+ -..... .....++|-|+|..+.-+||.
T Consensus 36 pa~G~LYgl~~~g~lYtIn~~tG~aT~vg~s~~~~a---l~g~~~gvDFNP~aDRlRvvs 92 (236)
T PF14339_consen 36 PANGQLYGLGSTGRLYTINPATGAATPVGASPLTVA---LSGTAFGVDFNPAADRLRVVS 92 (236)
T ss_pred cCCCCEEEEeCCCcEEEEECCCCeEEEeeccccccc---ccCceEEEecCcccCcEEEEc
Confidence 4578775545556999999999997777 222111 112367777889888887774
No 104
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.11 E-value=3.1e+02 Score=29.58 Aligned_cols=71 Identities=11% Similarity=0.357 Sum_probs=41.8
Q ss_pred EecCeeEEEEeecCCCccEEEEEEEccCCCCCCeEEEEEecCCCCcceeEEEEeCCcEEEE-ecCCeEEEEECCCCcE
Q 016018 274 VLNESLAFVLRDKYRKSYEIQIWVMDEFGANEIWKKLFTTEPFCEIKRPLSFCERGELIME-DYYREACSYNLGTKEI 350 (396)
Q Consensus 274 ~~~g~L~~~~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~i~~~~~~~~p~~~~~~g~il~~-~~~~~l~~yd~~t~~~ 350 (396)
...+.|=++..-.+... +.+|.|.+. +-|+.--.=++...+.. +-++..-++++. ..++.+-+||+..++-
T Consensus 213 AfhpTlpliVSG~DDRq--VKlWrmnet---KaWEvDtcrgH~nnVss-vlfhp~q~lIlSnsEDksirVwDm~kRt~ 284 (1202)
T KOG0292|consen 213 AFHPTLPLIVSGADDRQ--VKLWRMNET---KAWEVDTCRGHYNNVSS-VLFHPHQDLILSNSEDKSIRVWDMTKRTS 284 (1202)
T ss_pred EecCCcceEEecCCcce--eeEEEeccc---cceeehhhhcccCCcce-EEecCccceeEecCCCccEEEEecccccc
Confidence 34444444444333344 999999985 45887544444433322 334444455555 4466799999988863
No 105
>PLN02772 guanylate kinase
Probab=20.09 E-value=4.3e+02 Score=25.74 Aligned_cols=63 Identities=5% Similarity=0.074 Sum_probs=42.3
Q ss_pred eEEEecCeeEEEEeecCCCccEEEEEEEccCCCCCCeEEEEEecCCC--CcceeEEEEeCCcEEEEe
Q 016018 271 KLTVLNESLAFVLRDKYRKSYEIQIWVMDEFGANEIWKKLFTTEPFC--EIKRPLSFCERGELIMED 335 (396)
Q Consensus 271 ~l~~~~g~L~~~~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~i~~~~--~~~~p~~~~~~g~il~~~ 335 (396)
..++.++++++++...+.......+|+++.. ...|+.--..+..+ .-.+..++.+++.||++.
T Consensus 29 tav~igdk~yv~GG~~d~~~~~~~v~i~D~~--t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~ 93 (398)
T PLN02772 29 TSVTIGDKTYVIGGNHEGNTLSIGVQILDKI--TNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIK 93 (398)
T ss_pred eeEEECCEEEEEcccCCCccccceEEEEECC--CCcEecccccCCCCCCCCcceEEEECCceEEEEe
Confidence 4678899999999866543234899999963 57898866554322 223455566667777764
Done!