BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>016020
MEGLGRRISASPRPCSGRRVLAKKRVRSDGFVNSVKKLQRREICSKRDRAFSISNAQERF
RNMHLVEEYDTHDPKGHCPFVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRETNRR
ICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALF
ESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIML
LIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDV
RNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCN
TNNIYITSDQDLIISYCKAEPEDQWMEGSGNSFTCL

High Scoring Gene Products

Symbol, full name Information P value
AT3G54190 protein from Arabidopsis thaliana 2.3e-190
AT2G38630 protein from Arabidopsis thaliana 1.4e-181

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  016020
        (396 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2080305 - symbol:AT3G54190 "AT3G54190" species...  1845  2.3e-190  1
TAIR|locus:2064201 - symbol:AT2G38630 "AT2G38630" species...  1762  1.4e-181  1


>TAIR|locus:2080305 [details] [associations]
            symbol:AT3G54190 "AT3G54190" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005739
            "mitochondrion" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0010413 "glucuronoxylan metabolic process"
            evidence=RCA] [GO:0045492 "xylan biosynthetic process"
            evidence=RCA] InterPro:IPR017986 InterPro:IPR015943 EMBL:CP002686
            GenomeReviews:BA000014_GR Gene3D:2.130.10.10 SUPFAM:SSF50978
            HOGENOM:HOG000238398 ProtClustDB:CLSN2689156 EMBL:AF360263
            EMBL:AY040076 EMBL:AF428345 IPI:IPI00523580 RefSeq:NP_566994.1
            UniGene:At.22584 ProteinModelPortal:Q9C5G8 IntAct:Q9C5G8
            EnsemblPlants:AT3G54190.1 GeneID:824586 KEGG:ath:AT3G54190
            TAIR:At3g54190 InParanoid:Q9C5G8 OMA:IFLYELQ PhylomeDB:Q9C5G8
            ArrayExpress:Q9C5G8 Genevestigator:Q9C5G8 Uniprot:Q9C5G8
        Length = 467

 Score = 1845 (654.5 bits), Expect = 2.3e-190, P = 2.3e-190
 Identities = 352/388 (90%), Positives = 371/388 (95%)

Query:     5 GRRISASPRPCSGRRVLAKKRVRSDGFVNSVKKLQRREICSKRDRAFSISNAQERFRNMH 64
             GRRI+ASPRPCSGRR++AKKR R DGFVNSVKKLQRREI S++DRAFSIS AQERFRNM 
Sbjct:     3 GRRITASPRPCSGRRIVAKKRSRPDGFVNSVKKLQRREISSRKDRAFSISTAQERFRNMR 62

Query:    65 LVEEYDTHDPKGHCPFVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRETNRRICFL 124
             LVE+YDTHDPKGHC   LPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRE+N+RICFL
Sbjct:    63 LVEQYDTHDPKGHCLVALPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRESNKRICFL 122

Query:   125 NVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESES 184
             NVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRST+IEYI RG+PD+GFALFESES
Sbjct:   123 NVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTRIEYILRGQPDAGFALFESES 182

Query:   185 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFN 244
             LKWPGFVEFDDVNGKVLTYSAQDS+YKVFDLKNYTMLYSISDK+VQEIKISPGIMLLIF 
Sbjct:   183 LKWPGFVEFDDVNGKVLTYSAQDSVYKVFDLKNYTMLYSISDKNVQEIKISPGIMLLIFK 242

Query:   245 RSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE 304
             R++SHVPLKILSIEDGTVLK F HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE
Sbjct:   243 RAASHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE 302

Query:   305 LMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNI 364
             LMEVSR EFMTPSAFIFLYENQLFLTFRNR V+VWNFRGELVTSFEDHLLWHPDCNTNNI
Sbjct:   303 LMEVSRAEFMTPSAFIFLYENQLFLTFRNRNVSVWNFRGELVTSFEDHLLWHPDCNTNNI 362

Query:   365 YITSDQDLIISYCKAEPEDQWMEGSGNS 392
             YITSDQDLIISYCKA+ EDQW+EG+  S
Sbjct:   363 YITSDQDLIISYCKADTEDQWIEGNAGS 390


>TAIR|locus:2064201 [details] [associations]
            symbol:AT2G38630 "AT2G38630" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005739
            "mitochondrion" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR017986 InterPro:IPR015943 EMBL:CP002685
            Gene3D:2.130.10.10 SUPFAM:SSF50978 UniGene:At.37270 EMBL:BT004257
            EMBL:BT005523 IPI:IPI00534024 RefSeq:NP_181397.2
            ProteinModelPortal:Q84J57 SMR:Q84J57 EnsemblPlants:AT2G38630.1
            GeneID:818445 KEGG:ath:AT2G38630 TAIR:At2g38630 eggNOG:NOG72858
            HOGENOM:HOG000238398 InParanoid:Q84J57 OMA:MMEGRRI PhylomeDB:Q84J57
            ProtClustDB:CLSN2689156 Genevestigator:Q84J57 Uniprot:Q84J57
        Length = 467

 Score = 1762 (625.3 bits), Expect = 1.4e-181, P = 1.4e-181
 Identities = 337/389 (86%), Positives = 365/389 (93%)

Query:     5 GRRISASPRPCSG-RRVLAKKRVRSDGFVNSVKKLQRREICSKRDRAFSISNAQERFRNM 63
             GRRI A+PRPCSG RRV+AKKR R DGFVNSVKKLQRREI S+ DRAFSIS AQERFRNM
Sbjct:     4 GRRIIANPRPCSGSRRVIAKKRSRPDGFVNSVKKLQRREISSRMDRAFSISTAQERFRNM 63

Query:    64 HLVEEYDTHDPKGHCPFVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRETNRRICF 123
              LVE+YDTHDPKG+C   LP L+KR+KVIEIVAARDIVFAL  SGVCA+FSRETN+++CF
Sbjct:    64 RLVEQYDTHDPKGYCLVSLPNLLKRSKVIEIVAARDIVFALTLSGVCASFSRETNKKVCF 123

Query:   124 LNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESE 183
             LNVSPDEVIRSLFYNKNNDSLITVSVYASDN+SSLKCRST+IEYI RG+ D+GF LFESE
Sbjct:   124 LNVSPDEVIRSLFYNKNNDSLITVSVYASDNYSSLKCRSTRIEYILRGQADAGFPLFESE 183

Query:   184 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIF 243
             SLKWPGFVEFDDVNGKVLTYSAQDS+YKVFDLKNY +LYSISDK+VQEIKISPGIMLLIF
Sbjct:   184 SLKWPGFVEFDDVNGKVLTYSAQDSVYKVFDLKNYALLYSISDKNVQEIKISPGIMLLIF 243

Query:   244 NRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNA 303
              R++SHVPLKILSIEDGT+LK F+HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNA
Sbjct:   244 KRAASHVPLKILSIEDGTLLKSFHHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNA 303

Query:   304 ELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNN 363
             EL+EVSRT+FMTPSAFIFLYENQLFLTFRNR V+VWNFRGELVTSFEDHLLWHPDCNTNN
Sbjct:   304 ELIEVSRTDFMTPSAFIFLYENQLFLTFRNRNVSVWNFRGELVTSFEDHLLWHPDCNTNN 363

Query:   364 IYITSDQDLIISYCKAEPEDQWMEGSGNS 392
             IYITSDQDLIISYCKA+ EDQW+EG+  S
Sbjct:   364 IYITSDQDLIISYCKADTEDQWIEGNAGS 392


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.137   0.406    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      396       396   0.00096  117 3  11 22  0.49    33
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  616 (65 KB)
  Total size of DFA:  261 KB (2140 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  37.67u 0.09s 37.76t   Elapsed:  00:00:02
  Total cpu time:  37.67u 0.09s 37.76t   Elapsed:  00:00:02
  Start:  Fri May 10 04:13:37 2013   End:  Fri May 10 04:13:39 2013

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