BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 016020
         (396 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|O22469|MSI3_ARATH WD-40 repeat-containing protein MSI3 OS=Arabidopsis thaliana
           GN=MSI3 PE=1 SV=2
          Length = 424

 Score = 35.8 bits (81), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 52/224 (23%), Positives = 89/224 (39%), Gaps = 33/224 (14%)

Query: 102 FALAHSGVCAAF--SRETNRRICFLNVSP---DEVIRSLFYNKNNDSLITVSVYASDN-- 154
           + LA S     +  S   ++RIC  +VS    D+V+  +   + + S+I    +   N  
Sbjct: 173 YGLAWSSFKEGYLLSGSQDQRICLWDVSATATDKVLNPMHVYEGHQSIIEDVAWHMKNEN 232

Query: 155 -FSSL--KCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYK 211
            F S    C+   I  +R  +      + E E      ++ F+  N  VL  ++ DS   
Sbjct: 233 IFGSAGDDCQLV-IWDLRTNQMQHQVKVHEREI----NYLSFNPFNEWVLATASSDSTVA 287

Query: 212 VFDLKNYTMLYSISDKH---VQEIKISPG-------------IMLLIFNRSSSHVPLKIL 255
           +FDL+  T    +  KH   V +++  P              +M+   NR         L
Sbjct: 288 LFDLRKLTAPLHVLSKHEGEVFQVEWDPNHETVLASSGEDRRLMVWDINRVGDEQLEIEL 347

Query: 256 SIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ--ENENLQI 297
             EDG    +F H  H+ K  DF    +E  ++    E+ +LQ+
Sbjct: 348 DAEDGPPELLFSHGGHKAKISDFAWNKDEPWVISSVAEDNSLQV 391


>sp|Q8MJ04|RP1_CANFA Oxygen-regulated protein 1 OS=Canis familiaris GN=RP1 PE=2 SV=1
          Length = 2141

 Score = 33.9 bits (76), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 24/134 (17%)

Query: 212  VFDLKNYTM-------LYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLK 264
            V +LKNY++        Y+ SDK   +    PG +      S  ++       E      
Sbjct: 1415 VAELKNYSLKTFQGKNAYTSSDKEDSKTSEEPGSITNSMTSSERNISELESFEELENQDT 1474

Query: 265  VFYHLLHRNKKVDFIEQFNEKLLVKQ--ENENLQILDV----------RNAELMEVSRTE 312
              +H+     KV+  EQ  E+L+ K+   ++NLQ++D           RN  + E  R  
Sbjct: 1475 DTFHM-----KVNAREQAAEELIQKELEASKNLQLIDGSRRNITEEEERNGIICEAIRRR 1529

Query: 313  FMTPSAFIFLYENQ 326
              TP + +F Y+++
Sbjct: 1530 LATPPSLVFCYDSK 1543


>sp|Q2V898|TLR4_BOSTR Toll-like receptor 4 OS=Boselaphus tragocamelus GN=TLR4 PE=2 SV=1
          Length = 841

 Score = 33.5 bits (75), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 57/118 (48%), Gaps = 19/118 (16%)

Query: 282 FNEKLL--VKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVW 339
           F + LL  +  E  NL +LD+   +L +V++T F + S+       Q+     N+ +++ 
Sbjct: 483 FQDNLLPDIFTELTNLTVLDLSKCQLEQVAQTAFHSLSSL------QVLNMSHNKLLSLD 536

Query: 340 NFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPED-QWMEGSGNSFTCL 396
            F  E +     HLL   DC+ N I  + +QDL     +  P +  W+  + N+F C+
Sbjct: 537 TFLYEPL-----HLLRILDCSFNRIMDSKEQDL-----QNLPRNLTWLNLTQNAFACV 584


>sp|A4XIU2|FTHS_CALS8 Formate--tetrahydrofolate ligase OS=Caldicellulosiruptor
           saccharolyticus (strain ATCC 43494 / DSM 8903) GN=fhs
           PE=3 SV=1
          Length = 554

 Score = 32.3 bits (72), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 54/242 (22%), Positives = 94/242 (38%), Gaps = 45/242 (18%)

Query: 26  VRSDGFVNSVKKLQRREICSKRDRAFSISNAQERFRNMHLVEEYD-----THDPKGHCPF 80
           VR DGF+ SV       +C   D    + + +ER  N+ +   YD       D K H   
Sbjct: 188 VREDGFIISVASEVMAILCLSND----LEDLKERLGNILVGFSYDKKPIYAKDLKVHGAM 243

Query: 81  VLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKN 140
            L  L+K      +V   +   A+ H G  A  +  TN            +I      K 
Sbjct: 244 AL--LLKDAIKPNLVQTSEATAAIIHGGPFANIAHGTN-----------SIIAIKIAQKL 290

Query: 141 NDSLITVSVYASD----NFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDV 196
           +D ++  + + +D     F ++  R + I       P +   +  +++LK+ G +   + 
Sbjct: 291 SDYVVVEAGFGADLGAEKFVNIVSRKSGI------YPSAAVMVVTTKALKYHGSMGAKEN 344

Query: 197 NGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILS 256
               LT    D++ K F  KN        +KH++ +K+     ++  NR     P +I  
Sbjct: 345 ----LTSENIDTLKKGF--KNL-------EKHIENLKLLGLEAIVTLNRFPHDTPAEISE 391

Query: 257 IE 258
           IE
Sbjct: 392 IE 393


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.323    0.137    0.406 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 142,081,789
Number of Sequences: 539616
Number of extensions: 5742145
Number of successful extensions: 14767
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 14767
Number of HSP's gapped (non-prelim): 8
length of query: 396
length of database: 191,569,459
effective HSP length: 120
effective length of query: 276
effective length of database: 126,815,539
effective search space: 35001088764
effective search space used: 35001088764
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 62 (28.5 bits)