Query 016020
Match_columns 396
No_of_seqs 41 out of 43
Neff 3.7
Searched_HMMs 46136
Date Fri Mar 29 03:03:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016020.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016020hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00200 WD40 WD40 domain, foun 99.6 4.4E-13 9.4E-18 113.5 24.1 260 89-371 10-282 (289)
2 KOG0266 WD40 repeat-containing 99.5 3.2E-13 6.9E-18 136.8 17.6 181 191-378 165-362 (456)
3 PLN00181 protein SPA1-RELATED; 99.5 1.1E-11 2.3E-16 132.6 26.4 256 107-374 457-732 (793)
4 cd00200 WD40 WD40 domain, foun 99.4 2.3E-11 4.9E-16 103.1 18.6 157 190-353 14-177 (289)
5 KOG0266 WD40 repeat-containing 99.4 2.5E-11 5.4E-16 123.1 18.6 188 191-387 209-408 (456)
6 PTZ00421 coronin; Provisional 99.3 1.9E-10 4.2E-15 119.1 21.0 164 170-343 61-246 (493)
7 TIGR03866 PQQ_ABC_repeats PQQ- 99.3 2E-09 4.3E-14 96.3 24.4 248 101-367 4-265 (300)
8 PTZ00420 coronin; Provisional 99.3 1.8E-10 3.9E-15 121.7 20.7 188 190-381 79-294 (568)
9 KOG0272 U4/U6 small nuclear ri 99.2 1.6E-10 3.4E-15 118.0 14.9 236 97-354 186-431 (459)
10 KOG0319 WD40-repeat-containing 99.2 8.9E-11 1.9E-15 125.6 13.4 233 99-340 337-617 (775)
11 KOG0279 G protein beta subunit 99.2 6.5E-10 1.4E-14 109.2 15.2 154 197-356 27-195 (315)
12 KOG0295 WD40 repeat-containing 99.1 2.6E-09 5.7E-14 107.8 17.2 245 87-352 107-375 (406)
13 KOG0272 U4/U6 small nuclear ri 99.1 2.3E-10 5.1E-15 116.8 9.2 165 187-357 219-391 (459)
14 KOG0263 Transcription initiati 99.1 1.4E-09 3E-14 116.7 14.1 173 192-371 458-640 (707)
15 TIGR03866 PQQ_ABC_repeats PQQ- 99.0 1.5E-07 3.2E-12 84.2 23.7 226 105-350 50-288 (300)
16 KOG0281 Beta-TrCP (transducin 99.0 1.1E-09 2.3E-14 110.8 10.0 149 187-344 236-430 (499)
17 PTZ00421 coronin; Provisional 99.0 1E-07 2.2E-12 99.1 24.1 208 127-348 73-297 (493)
18 KOG0271 Notchless-like WD40 re 99.0 2.6E-09 5.6E-14 108.8 11.6 170 190-365 120-302 (480)
19 PLN00181 protein SPA1-RELATED; 99.0 6E-08 1.3E-12 104.1 22.5 233 87-341 531-792 (793)
20 PTZ00420 coronin; Provisional 99.0 1.8E-07 3.9E-12 99.3 25.0 223 108-344 54-295 (568)
21 KOG0282 mRNA splicing factor [ 99.0 2E-09 4.4E-14 111.2 9.5 184 183-370 206-415 (503)
22 KOG0265 U5 snRNP-specific prot 98.9 1.3E-08 2.8E-13 101.0 12.8 194 197-396 101-314 (338)
23 KOG0319 WD40-repeat-containing 98.9 4.9E-08 1.1E-12 105.1 17.5 188 189-382 415-621 (775)
24 KOG0285 Pleiotropic regulator 98.9 3.4E-08 7.4E-13 100.2 15.4 195 183-384 149-393 (460)
25 KOG0274 Cdc4 and related F-box 98.9 4E-08 8.7E-13 103.4 16.3 173 191-371 255-432 (537)
26 KOG0643 Translation initiation 98.8 1.8E-07 3.8E-12 92.3 16.9 182 190-380 15-253 (327)
27 KOG0263 Transcription initiati 98.8 3.1E-08 6.7E-13 106.6 11.6 147 190-343 498-650 (707)
28 KOG1446 Histone H3 (Lys4) meth 98.8 2.4E-07 5.1E-12 92.0 16.6 175 187-367 16-204 (311)
29 KOG0279 G protein beta subunit 98.8 2.7E-07 5.8E-12 91.1 16.8 232 91-342 66-313 (315)
30 KOG0281 Beta-TrCP (transducin 98.8 7.3E-09 1.6E-13 104.9 5.8 180 189-380 201-388 (499)
31 KOG0286 G-protein beta subunit 98.8 6.2E-07 1.3E-11 89.2 18.7 216 153-396 83-321 (343)
32 KOG0274 Cdc4 and related F-box 98.7 1.7E-07 3.7E-12 98.7 15.3 166 198-369 218-389 (537)
33 KOG0275 Conserved WD40 repeat- 98.7 1.7E-08 3.8E-13 101.6 7.3 184 185-374 213-427 (508)
34 KOG0310 Conserved WD40 repeat- 98.7 1.1E-07 2.4E-12 98.6 11.3 157 191-353 74-238 (487)
35 KOG0645 WD40 repeat protein [G 98.7 2.1E-06 4.6E-11 84.7 18.9 185 190-378 19-223 (312)
36 KOG0303 Actin-binding protein 98.6 6.9E-07 1.5E-11 91.6 15.0 207 168-383 65-297 (472)
37 KOG0295 WD40 repeat-containing 98.6 6.3E-08 1.4E-12 98.0 6.8 159 190-353 113-277 (406)
38 KOG0276 Vesicle coat complex C 98.6 1.5E-06 3.1E-11 93.1 17.2 282 88-390 15-310 (794)
39 KOG0289 mRNA splicing factor [ 98.6 1.4E-06 2.9E-11 90.2 16.3 238 91-353 224-476 (506)
40 KOG0273 Beta-transducin family 98.6 5.1E-07 1.1E-11 93.8 13.1 114 191-312 365-493 (524)
41 COG2319 FOG: WD40 repeat [Gene 98.6 1.5E-05 3.4E-10 69.6 19.4 186 190-380 70-271 (466)
42 KOG0291 WD40-repeat-containing 98.6 1.4E-06 3E-11 94.6 15.4 151 197-352 403-561 (893)
43 KOG0291 WD40-repeat-containing 98.5 6.8E-06 1.5E-10 89.4 19.7 185 189-380 354-550 (893)
44 KOG1446 Histone H3 (Lys4) meth 98.5 5.6E-05 1.2E-09 75.5 24.6 268 89-374 15-299 (311)
45 KOG0306 WD40-repeat-containing 98.5 1.1E-06 2.5E-11 95.2 11.8 181 190-378 26-217 (888)
46 KOG0308 Conserved WD40 repeat- 98.5 1.1E-06 2.4E-11 94.1 11.5 163 197-362 84-266 (735)
47 PF08662 eIF2A: Eukaryotic tra 98.5 5.8E-06 1.2E-10 75.6 14.6 128 220-354 52-191 (194)
48 KOG0275 Conserved WD40 repeat- 98.4 3E-07 6.4E-12 92.9 6.3 153 191-351 269-432 (508)
49 KOG0276 Vesicle coat complex C 98.4 3.4E-06 7.4E-11 90.4 13.9 168 199-371 68-248 (794)
50 KOG0315 G-protein beta subunit 98.4 4.9E-06 1.1E-10 81.7 13.7 157 197-354 135-301 (311)
51 KOG0271 Notchless-like WD40 re 98.4 4.6E-06 9.9E-11 85.6 14.0 170 197-371 216-472 (480)
52 KOG0772 Uncharacterized conser 98.3 5.2E-06 1.1E-10 87.5 12.4 95 248-343 289-395 (641)
53 KOG0315 G-protein beta subunit 98.3 6.4E-06 1.4E-10 81.0 11.9 139 198-344 10-156 (311)
54 KOG0286 G-protein beta subunit 98.3 3.6E-05 7.8E-10 76.9 17.0 183 181-371 138-336 (343)
55 COG2319 FOG: WD40 repeat [Gene 98.3 8.2E-05 1.8E-09 65.1 17.2 147 200-352 125-283 (466)
56 KOG0283 WD40 repeat-containing 98.3 7.2E-06 1.6E-10 89.0 12.5 154 191-353 273-493 (712)
57 KOG0306 WD40-repeat-containing 98.2 1E-05 2.2E-10 88.1 12.5 224 98-374 424-658 (888)
58 KOG0284 Polyadenylation factor 98.2 6.8E-06 1.5E-10 84.6 10.3 218 101-343 111-338 (464)
59 KOG0288 WD40 repeat protein Ti 98.2 4.1E-06 8.8E-11 86.2 8.3 180 190-372 224-453 (459)
60 KOG0313 Microtubule binding pr 98.1 0.00032 6.9E-09 72.1 20.5 321 28-371 34-409 (423)
61 KOG0265 U5 snRNP-specific prot 98.1 3.8E-05 8.1E-10 76.9 13.5 161 185-353 44-216 (338)
62 KOG0292 Vesicle coat complex C 98.1 7.8E-06 1.7E-10 90.3 9.4 157 180-343 5-166 (1202)
63 KOG2048 WD40 repeat protein [G 98.1 9.2E-05 2E-09 79.8 17.0 184 197-386 80-282 (691)
64 KOG0647 mRNA export protein (c 98.1 1.4E-05 3.1E-10 79.9 9.1 125 220-350 18-154 (347)
65 KOG0284 Polyadenylation factor 98.1 9.8E-06 2.1E-10 83.5 7.6 197 118-343 93-295 (464)
66 KOG0296 Angio-associated migra 98.0 6.1E-05 1.3E-09 76.8 13.0 243 106-368 126-386 (399)
67 PRK11028 6-phosphogluconolacto 98.0 0.0016 3.4E-08 62.2 21.9 155 186-343 80-259 (330)
68 KOG0316 Conserved WD40 repeat- 98.0 0.00014 3.1E-09 71.3 14.8 208 109-340 82-297 (307)
69 KOG0278 Serine/threonine kinas 98.0 0.00012 2.6E-09 72.4 13.8 207 111-343 84-298 (334)
70 KOG0294 WD40 repeat-containing 98.0 5.5E-05 1.2E-09 76.2 11.6 187 200-396 99-303 (362)
71 KOG0292 Vesicle coat complex C 98.0 0.00014 3.1E-09 80.8 15.5 99 197-301 62-165 (1202)
72 KOG0273 Beta-transducin family 98.0 0.00018 3.9E-09 75.4 14.9 230 100-351 249-492 (524)
73 KOG0310 Conserved WD40 repeat- 97.9 0.00042 9.1E-09 72.6 17.1 184 189-378 114-307 (487)
74 KOG1274 WD40 repeat protein [G 97.9 0.00083 1.8E-08 74.7 19.4 237 108-362 15-285 (933)
75 KOG0772 Uncharacterized conser 97.9 0.00034 7.3E-09 74.3 15.0 239 123-379 208-487 (641)
76 KOG0647 mRNA export protein (c 97.8 0.00018 4E-09 72.2 12.0 147 190-343 32-185 (347)
77 KOG0294 WD40 repeat-containing 97.8 0.00026 5.5E-09 71.5 13.0 191 171-370 24-228 (362)
78 KOG0267 Microtubule severing p 97.8 2.6E-05 5.7E-10 84.6 6.4 175 190-371 75-259 (825)
79 KOG0282 mRNA splicing factor [ 97.8 4.5E-05 9.8E-10 79.7 7.8 146 219-371 205-363 (503)
80 KOG0277 Peroxisomal targeting 97.8 0.0001 2.2E-09 72.9 9.1 156 191-352 110-277 (311)
81 KOG0316 Conserved WD40 repeat- 97.8 0.00039 8.6E-09 68.4 13.1 151 191-346 23-178 (307)
82 PRK11028 6-phosphogluconolacto 97.8 0.0019 4.1E-08 61.7 17.5 154 185-343 125-305 (330)
83 KOG0640 mRNA cleavage stimulat 97.7 0.00014 3E-09 73.7 9.4 177 193-373 120-328 (430)
84 KOG0283 WD40 repeat-containing 97.7 0.00068 1.5E-08 74.1 14.6 159 183-343 404-577 (712)
85 KOG0973 Histone transcription 97.7 0.00038 8.3E-09 77.8 12.5 146 190-367 74-236 (942)
86 KOG1007 WD repeat protein TSSC 97.7 0.00019 4E-09 72.1 9.0 195 144-381 77-292 (370)
87 PRK01742 tolB translocation pr 97.7 0.0019 4.1E-08 65.2 16.3 146 190-343 208-362 (429)
88 KOG0318 WD40 repeat stress pro 97.6 0.0026 5.7E-08 67.7 17.4 177 202-384 164-354 (603)
89 KOG0305 Anaphase promoting com 97.6 0.0007 1.5E-08 71.4 13.2 226 98-344 229-463 (484)
90 KOG0288 WD40 repeat protein Ti 97.6 0.00071 1.5E-08 70.2 12.8 216 100-339 233-458 (459)
91 PRK01742 tolB translocation pr 97.6 0.002 4.3E-08 65.1 15.8 132 207-342 183-322 (429)
92 KOG0278 Serine/threonine kinas 97.6 0.00071 1.5E-08 67.1 12.0 175 64-306 122-302 (334)
93 KOG0289 mRNA splicing factor [ 97.6 0.0025 5.5E-08 66.7 16.5 268 85-387 184-468 (506)
94 KOG0269 WD40 repeat-containing 97.6 0.00023 5E-09 77.9 9.4 182 189-380 137-332 (839)
95 KOG1407 WD40 repeat protein [F 97.6 0.0012 2.7E-08 65.5 13.2 182 189-379 24-218 (313)
96 KOG0267 Microtubule severing p 97.6 6E-05 1.3E-09 81.9 4.2 139 206-352 54-195 (825)
97 KOG0641 WD40 repeat protein [G 97.6 0.0017 3.6E-08 64.0 13.7 141 197-343 193-350 (350)
98 KOG0264 Nucleosome remodeling 97.6 0.00096 2.1E-08 69.2 12.5 194 185-384 121-353 (422)
99 KOG0646 WD40 repeat protein [G 97.5 0.00036 7.9E-09 72.8 8.8 177 197-378 6-204 (476)
100 PLN02919 haloacid dehalogenase 97.5 0.012 2.5E-07 67.2 21.4 199 180-382 618-890 (1057)
101 KOG0640 mRNA cleavage stimulat 97.5 0.0016 3.5E-08 66.2 12.6 208 127-343 110-336 (430)
102 KOG1539 WD repeat protein [Gen 97.5 0.0021 4.5E-08 71.2 14.3 191 178-371 386-638 (910)
103 KOG0268 Sof1-like rRNA process 97.5 0.00042 9.1E-09 71.1 8.4 122 200-322 81-245 (433)
104 KOG0277 Peroxisomal targeting 97.4 0.0017 3.7E-08 64.4 12.1 144 227-375 61-216 (311)
105 PF13360 PQQ_2: PQQ-like domai 97.4 0.029 6.3E-07 50.1 18.3 190 187-385 25-236 (238)
106 KOG4283 Transcription-coupled 97.3 0.0033 7.3E-08 63.6 13.0 157 190-353 48-232 (397)
107 KOG0264 Nucleosome remodeling 97.3 0.0009 2E-08 69.4 9.3 151 182-343 180-348 (422)
108 KOG0301 Phospholipase A2-activ 97.3 0.001 2.2E-08 72.4 9.9 145 197-355 71-221 (745)
109 KOG0270 WD40 repeat-containing 97.3 0.0038 8.3E-08 65.2 13.6 139 193-344 251-406 (463)
110 PF08662 eIF2A: Eukaryotic tra 97.3 0.0028 6.1E-08 58.1 11.4 119 190-312 64-190 (194)
111 PRK03629 tolB translocation pr 97.3 0.02 4.3E-07 58.2 18.5 150 190-344 203-365 (429)
112 TIGR03300 assembly_YfgL outer 97.3 0.12 2.7E-06 50.4 23.4 251 95-375 102-375 (377)
113 KOG0318 WD40 repeat stress pro 97.3 0.007 1.5E-07 64.6 15.3 147 191-343 196-351 (603)
114 KOG1539 WD repeat protein [Gen 97.3 0.009 2E-07 66.4 16.6 164 183-355 163-336 (910)
115 KOG0771 Prolactin regulatory e 97.3 0.0013 2.8E-08 67.8 9.5 148 189-341 148-353 (398)
116 KOG0285 Pleiotropic regulator 97.3 0.0022 4.7E-08 66.1 11.0 151 223-376 146-303 (460)
117 TIGR02800 propeller_TolB tol-p 97.3 0.026 5.6E-07 55.2 18.1 149 192-344 196-356 (417)
118 PRK03629 tolB translocation pr 97.2 0.055 1.2E-06 55.0 20.7 201 131-349 200-413 (429)
119 KOG0301 Phospholipase A2-activ 97.2 0.00084 1.8E-08 73.0 8.1 169 198-376 25-204 (745)
120 KOG0296 Angio-associated migra 97.2 0.035 7.6E-07 57.2 19.0 180 193-378 72-261 (399)
121 KOG0305 Anaphase promoting com 97.2 0.012 2.5E-07 62.5 16.0 192 187-381 259-462 (484)
122 KOG1274 WD40 repeat protein [G 97.2 0.001 2.3E-08 73.9 8.4 154 131-304 98-265 (933)
123 KOG0293 WD40 repeat-containing 97.2 0.0026 5.7E-08 66.4 10.5 150 227-379 225-383 (519)
124 KOG0639 Transducin-like enhanc 97.2 0.0011 2.4E-08 70.4 8.0 72 282-353 476-551 (705)
125 PRK04922 tolB translocation pr 97.2 0.041 8.9E-07 55.6 18.8 152 190-347 252-416 (433)
126 KOG1036 Mitotic spindle checkp 97.2 0.0029 6.4E-08 63.6 10.3 135 226-366 13-150 (323)
127 PRK05137 tolB translocation pr 97.1 0.035 7.7E-07 56.0 18.2 149 191-344 207-368 (435)
128 PLN02919 haloacid dehalogenase 97.1 0.025 5.4E-07 64.6 18.9 248 98-359 580-910 (1057)
129 KOG1273 WD40 repeat protein [G 97.1 0.012 2.5E-07 60.2 14.3 186 189-380 27-226 (405)
130 PRK02889 tolB translocation pr 97.1 0.043 9.4E-07 55.5 18.0 148 191-343 201-361 (427)
131 KOG0313 Microtubule binding pr 97.0 0.0032 6.9E-08 64.9 9.6 110 190-304 265-379 (423)
132 PRK04922 tolB translocation pr 97.0 0.041 8.9E-07 55.6 17.4 147 192-343 210-369 (433)
133 KOG0302 Ribosome Assembly prot 97.0 0.0042 9.2E-08 64.1 10.3 134 194-329 266-411 (440)
134 KOG0299 U3 snoRNP-associated p 97.0 0.0052 1.1E-07 64.4 10.8 181 198-385 214-407 (479)
135 PF13360 PQQ_2: PQQ-like domai 97.0 0.17 3.8E-06 45.1 19.0 170 207-385 2-197 (238)
136 KOG0270 WD40 repeat-containing 96.9 0.016 3.6E-07 60.6 13.1 153 140-302 135-318 (463)
137 KOG0646 WD40 repeat protein [G 96.9 0.024 5.2E-07 59.7 14.2 156 191-349 129-315 (476)
138 KOG0303 Actin-binding protein 96.8 0.0066 1.4E-07 63.1 9.9 154 192-347 38-209 (472)
139 TIGR03300 assembly_YfgL outer 96.8 0.18 4E-06 49.2 19.6 133 197-338 241-375 (377)
140 PRK05137 tolB translocation pr 96.8 0.085 1.8E-06 53.3 17.6 133 208-344 182-324 (435)
141 KOG2096 WD40 repeat protein [G 96.8 0.038 8.3E-07 56.6 15.0 191 191-383 92-364 (420)
142 KOG2055 WD40 repeat protein [G 96.8 0.0088 1.9E-07 63.0 10.5 147 192-343 264-418 (514)
143 KOG0293 WD40 repeat-containing 96.7 0.018 3.8E-07 60.4 11.9 150 190-343 229-385 (519)
144 PF02239 Cytochrom_D1: Cytochr 96.7 0.087 1.9E-06 53.3 16.5 160 202-367 10-188 (369)
145 KOG0300 WD40 repeat-containing 96.7 0.014 3E-07 59.8 10.5 158 199-366 161-366 (481)
146 KOG0650 WD40 repeat nucleolar 96.5 0.029 6.2E-07 61.0 12.4 171 197-368 411-626 (733)
147 KOG0302 Ribosome Assembly prot 96.4 0.037 8.1E-07 57.4 12.1 170 197-371 164-369 (440)
148 KOG0321 WD40 repeat-containing 96.4 0.031 6.7E-07 60.9 12.0 105 197-304 63-178 (720)
149 KOG0643 Translation initiation 96.4 0.043 9.4E-07 55.1 12.1 178 192-372 59-309 (327)
150 KOG4328 WD40 protein [Function 96.4 0.018 3.9E-07 60.6 9.6 163 174-342 224-399 (498)
151 PF08450 SGL: SMP-30/Gluconola 96.4 0.39 8.4E-06 44.3 17.3 178 188-368 42-244 (246)
152 KOG0649 WD40 repeat protein [G 96.4 0.048 1E-06 54.3 11.8 99 249-350 135-244 (325)
153 PRK02889 tolB translocation pr 96.3 0.13 2.8E-06 52.2 15.3 146 188-342 159-314 (427)
154 PF10282 Lactonase: Lactonase, 96.3 0.4 8.7E-06 47.2 18.3 173 184-359 142-342 (345)
155 PRK00178 tolB translocation pr 96.3 0.31 6.7E-06 48.7 17.8 149 190-343 203-364 (430)
156 KOG1188 WD40 repeat protein [G 96.3 0.064 1.4E-06 55.1 12.7 184 199-387 41-251 (376)
157 KOG1034 Transcriptional repres 96.3 0.033 7.2E-07 57.0 10.5 119 237-361 104-231 (385)
158 KOG1407 WD40 repeat protein [F 96.3 0.061 1.3E-06 53.9 12.0 215 105-342 39-261 (313)
159 PRK11138 outer membrane biogen 96.3 1.1 2.4E-05 44.6 21.0 133 198-340 257-392 (394)
160 PRK00178 tolB translocation pr 96.2 0.83 1.8E-05 45.7 19.9 151 190-346 247-410 (430)
161 PRK04792 tolB translocation pr 96.1 0.35 7.7E-06 49.7 17.4 147 192-343 224-383 (448)
162 TIGR02800 propeller_TolB tol-p 96.1 0.41 8.9E-06 46.9 17.1 132 208-343 170-311 (417)
163 KOG1036 Mitotic spindle checkp 96.1 0.38 8.3E-06 48.8 16.8 235 123-380 7-262 (323)
164 KOG1445 Tumor-specific antigen 96.1 0.053 1.1E-06 59.6 11.3 189 183-383 80-296 (1012)
165 KOG4227 WD40 repeat protein [G 96.0 0.07 1.5E-06 56.0 11.3 161 177-343 45-226 (609)
166 PF10282 Lactonase: Lactonase, 96.0 1.9 4.1E-05 42.5 26.6 155 186-343 87-276 (345)
167 PRK04792 tolB translocation pr 95.9 0.2 4.3E-06 51.5 14.5 129 212-343 202-339 (448)
168 KOG1408 WD40 repeat protein [F 95.9 0.067 1.5E-06 59.4 11.3 136 205-345 55-197 (1080)
169 KOG0645 WD40 repeat protein [G 95.9 1.3 2.8E-05 44.8 19.4 147 191-342 67-225 (312)
170 KOG0269 WD40 repeat-containing 95.9 0.024 5.2E-07 62.7 7.9 174 179-360 86-276 (839)
171 KOG4328 WD40 protein [Function 95.9 0.046 1E-06 57.7 9.6 187 191-379 192-398 (498)
172 KOG2321 WD40 repeat protein [G 95.7 0.088 1.9E-06 57.2 10.9 186 133-339 137-340 (703)
173 KOG0299 U3 snoRNP-associated p 95.6 0.03 6.4E-07 59.0 7.0 73 281-353 212-286 (479)
174 KOG0973 Histone transcription 95.6 0.12 2.6E-06 58.7 12.0 147 231-378 18-199 (942)
175 KOG1007 WD repeat protein TSSC 95.5 0.035 7.6E-07 56.3 6.8 98 205-343 190-290 (370)
176 KOG1034 Transcriptional repres 95.5 0.11 2.3E-06 53.5 10.2 184 192-380 142-375 (385)
177 KOG1188 WD40 repeat protein [G 95.5 0.071 1.5E-06 54.7 8.9 173 197-382 10-198 (376)
178 KOG2315 Predicted translation 95.4 0.4 8.7E-06 51.8 14.6 135 217-362 260-414 (566)
179 KOG0307 Vesicle coat complex C 95.4 0.016 3.5E-07 65.8 4.5 153 191-344 122-329 (1049)
180 PF02239 Cytochrom_D1: Cytochr 95.4 0.8 1.7E-05 46.4 16.2 161 188-351 39-212 (369)
181 KOG0308 Conserved WD40 repeat- 95.3 0.17 3.7E-06 55.5 11.7 148 190-345 175-330 (735)
182 KOG1354 Serine/threonine prote 95.3 0.071 1.5E-06 55.1 8.3 113 191-307 219-365 (433)
183 KOG2111 Uncharacterized conser 95.3 0.47 1E-05 48.6 13.9 154 87-261 93-259 (346)
184 KOG0641 WD40 repeat protein [G 95.2 1.7 3.7E-05 43.4 17.3 206 108-347 92-308 (350)
185 KOG4283 Transcription-coupled 95.2 0.61 1.3E-05 47.8 14.3 149 199-352 159-334 (397)
186 PRK11138 outer membrane biogen 95.1 3.9 8.4E-05 40.8 23.2 266 95-386 66-360 (394)
187 KOG0268 Sof1-like rRNA process 95.1 0.051 1.1E-06 56.3 6.8 149 189-343 191-346 (433)
188 KOG1009 Chromatin assembly com 95.1 0.086 1.9E-06 55.0 8.3 111 191-307 71-201 (434)
189 KOG0644 Uncharacterized conser 95.0 0.011 2.3E-07 66.1 1.6 113 249-371 211-337 (1113)
190 KOG4378 Nuclear protein COP1 [ 94.8 0.34 7.3E-06 52.3 11.8 213 125-366 32-266 (673)
191 PF00400 WD40: WD domain, G-be 94.7 0.095 2E-06 35.0 5.2 38 303-340 1-39 (39)
192 TIGR02658 TTQ_MADH_Hv methylam 94.6 3.5 7.5E-05 42.3 18.2 79 187-267 48-145 (352)
193 KOG2048 WD40 repeat protein [G 94.5 1.4 3E-05 48.7 15.8 136 201-343 40-185 (691)
194 KOG0290 Conserved WD40 repeat- 94.5 1 2.3E-05 46.0 13.9 154 192-353 157-329 (364)
195 KOG1272 WD40-repeat-containing 94.2 0.12 2.6E-06 55.0 6.9 157 188-350 132-333 (545)
196 KOG4378 Nuclear protein COP1 [ 94.1 0.83 1.8E-05 49.4 13.0 170 189-368 125-304 (673)
197 KOG2445 Nuclear pore complex c 94.1 1.9 4.1E-05 44.4 14.8 243 126-385 10-323 (361)
198 KOG2110 Uncharacterized conser 94.0 1.2 2.5E-05 46.4 13.4 137 201-343 100-249 (391)
199 PRK01029 tolB translocation pr 93.9 3.9 8.4E-05 42.1 17.0 151 190-343 235-404 (428)
200 KOG1445 Tumor-specific antigen 93.9 0.11 2.5E-06 57.1 6.2 83 250-343 668-751 (1012)
201 KOG1273 WD40 repeat protein [G 93.8 0.11 2.3E-06 53.4 5.5 81 271-352 24-108 (405)
202 KOG2314 Translation initiation 93.7 0.72 1.6E-05 50.3 11.8 147 189-384 214-371 (698)
203 KOG2919 Guanine nucleotide-bin 93.7 0.19 4E-06 51.8 7.0 194 131-367 51-267 (406)
204 KOG0300 WD40 repeat-containing 93.5 0.63 1.4E-05 48.1 10.5 144 198-349 284-435 (481)
205 PF00780 CNH: CNH domain; Int 93.2 3.2 6.8E-05 38.7 13.8 157 206-378 54-246 (275)
206 KOG1963 WD40 repeat protein [G 93.1 0.15 3.2E-06 56.9 5.7 74 284-357 28-106 (792)
207 TIGR02658 TTQ_MADH_Hv methylam 93.1 12 0.00026 38.5 24.2 240 108-363 27-311 (352)
208 KOG1009 Chromatin assembly com 93.0 0.93 2E-05 47.6 10.9 130 191-358 19-170 (434)
209 KOG2055 WD40 repeat protein [G 92.9 3.5 7.6E-05 44.2 15.1 174 190-379 218-416 (514)
210 KOG0639 Transducin-like enhanc 92.3 0.33 7.1E-06 52.4 6.7 165 197-372 476-655 (705)
211 KOG1063 RNA polymerase II elon 92.2 2.4 5.2E-05 47.2 13.2 164 157-343 49-225 (764)
212 KOG0322 G-protein beta subunit 92.1 1.1 2.4E-05 45.3 9.7 148 191-341 158-322 (323)
213 KOG3881 Uncharacterized conser 91.9 2.2 4.8E-05 44.7 11.9 148 191-343 154-321 (412)
214 cd00216 PQQ_DH Dehydrogenases 91.8 18 0.0004 37.7 20.8 141 191-334 291-458 (488)
215 COG5354 Uncharacterized protei 91.7 7.2 0.00016 42.4 15.7 154 191-348 137-312 (561)
216 KOG1332 Vesicle coat complex C 91.5 2.2 4.8E-05 42.8 11.0 186 196-385 21-247 (299)
217 KOG3881 Uncharacterized conser 91.3 2.2 4.8E-05 44.7 11.3 141 194-369 112-266 (412)
218 KOG2096 WD40 repeat protein [G 91.3 0.99 2.2E-05 46.7 8.6 155 197-354 239-417 (420)
219 KOG0649 WD40 repeat protein [G 91.3 8.5 0.00018 38.9 14.7 154 193-355 122-289 (325)
220 KOG1517 Guanine nucleotide bin 90.8 3.4 7.4E-05 48.2 12.9 174 179-357 1058-1258(1387)
221 KOG0771 Prolactin regulatory e 90.4 0.4 8.6E-06 50.0 5.0 96 274-370 148-252 (398)
222 KOG1332 Vesicle coat complex C 90.4 1.6 3.5E-05 43.8 8.9 197 182-389 61-295 (299)
223 KOG0644 Uncharacterized conser 90.3 0.14 3.1E-06 57.6 1.8 138 192-340 197-344 (1113)
224 PF06977 SdiA-regulated: SdiA- 90.2 20 0.00042 35.1 18.9 144 228-375 66-246 (248)
225 KOG1408 WD40 repeat protein [F 90.0 1.3 2.7E-05 49.9 8.5 115 227-344 597-715 (1080)
226 PRK01029 tolB translocation pr 89.2 24 0.00051 36.4 16.6 129 210-341 167-310 (428)
227 KOG1517 Guanine nucleotide bin 89.0 5.9 0.00013 46.4 13.0 103 249-355 1186-1301(1387)
228 KOG1587 Cytoplasmic dynein int 88.6 1.2 2.6E-05 48.3 7.1 216 87-347 241-521 (555)
229 smart00320 WD40 WD40 repeats. 88.6 1.2 2.6E-05 26.0 4.3 33 308-340 7-40 (40)
230 KOG1063 RNA polymerase II elon 88.6 3.4 7.3E-05 46.1 10.4 151 189-342 525-699 (764)
231 KOG2106 Uncharacterized conser 88.4 8.4 0.00018 42.0 13.0 147 190-340 159-314 (626)
232 PF00400 WD40: WD domain, G-be 88.0 1.1 2.3E-05 29.8 4.2 36 260-299 1-39 (39)
233 KOG2110 Uncharacterized conser 87.4 15 0.00032 38.6 13.7 174 200-381 18-206 (391)
234 KOG4547 WD40 repeat-containing 86.7 38 0.00081 37.2 16.7 144 235-381 67-221 (541)
235 KOG0321 WD40 repeat-containing 86.5 1.8 3.9E-05 47.9 6.9 183 89-307 101-307 (720)
236 PRK04043 tolB translocation pr 86.3 44 0.00096 34.6 19.5 147 190-343 192-358 (419)
237 KOG2111 Uncharacterized conser 86.2 46 0.00099 34.6 16.4 185 149-348 22-219 (346)
238 KOG1064 RAVE (regulator of V-A 85.8 0.8 1.7E-05 55.5 4.1 130 207-349 2263-2406(2439)
239 PF08450 SGL: SMP-30/Gluconola 85.4 30 0.00066 31.9 17.4 146 188-343 2-165 (246)
240 KOG2394 WD40 protein DMR-N9 [G 85.3 5 0.00011 43.9 9.4 162 190-358 189-379 (636)
241 PF07569 Hira: TUP1-like enhan 84.9 2.5 5.4E-05 40.1 6.3 71 274-344 13-97 (219)
242 cd00216 PQQ_DH Dehydrogenases 84.6 56 0.0012 34.2 21.6 248 99-368 111-455 (488)
243 KOG1963 WD40 repeat protein [G 84.5 32 0.00069 39.3 15.4 180 191-371 63-272 (792)
244 KOG1272 WD40-repeat-containing 84.1 1.4 3.1E-05 47.1 4.8 144 101-249 144-357 (545)
245 KOG4532 WD40-like repeat conta 84.1 26 0.00056 36.0 13.2 144 205-352 135-296 (344)
246 KOG0642 Cell-cycle nuclear pro 83.9 2.7 5.9E-05 45.7 6.8 92 249-344 315-428 (577)
247 PRK04043 tolB translocation pr 83.1 61 0.0013 33.6 17.2 142 198-343 155-310 (419)
248 KOG2394 WD40 protein DMR-N9 [G 83.0 1.9 4.2E-05 46.9 5.2 98 222-323 286-384 (636)
249 KOG0307 Vesicle coat complex C 82.9 1.7 3.8E-05 50.1 5.1 162 130-307 162-333 (1049)
250 KOG1310 WD40 repeat protein [G 82.7 2.9 6.3E-05 45.9 6.4 99 276-375 56-173 (758)
251 COG4946 Uncharacterized protei 82.2 59 0.0013 35.8 15.6 131 183-327 354-502 (668)
252 KOG2106 Uncharacterized conser 82.2 74 0.0016 35.1 16.4 173 207-386 221-403 (626)
253 PF04053 Coatomer_WDAD: Coatom 82.0 12 0.00026 39.5 10.5 142 186-344 33-175 (443)
254 COG5170 CDC55 Serine/threonine 81.9 15 0.00033 38.3 10.8 72 276-347 227-317 (460)
255 KOG2321 WD40 repeat protein [G 80.9 27 0.00058 38.8 12.8 184 191-378 139-342 (703)
256 KOG3914 WD repeat protein WDR4 80.8 2.9 6.2E-05 43.8 5.4 171 197-377 119-318 (390)
257 KOG2919 Guanine nucleotide-bin 80.5 34 0.00073 35.9 12.7 185 194-381 119-328 (406)
258 KOG2445 Nuclear pore complex c 80.1 36 0.00078 35.4 12.7 114 191-342 19-144 (361)
259 KOG1240 Protein kinase contain 79.2 29 0.00063 41.5 13.0 144 203-349 1066-1233(1431)
260 KOG1587 Cytoplasmic dynein int 78.9 24 0.00053 38.5 11.8 162 191-354 248-442 (555)
261 KOG2695 WD40 repeat protein [G 78.5 16 0.00036 38.4 9.9 139 227-372 212-368 (425)
262 KOG0290 Conserved WD40 repeat- 77.9 6.9 0.00015 40.3 6.9 168 121-302 138-319 (364)
263 KOG4547 WD40 repeat-containing 77.4 30 0.00065 37.9 11.8 83 186-275 100-186 (541)
264 PF11768 DUF3312: Protein of u 76.7 1.3E+02 0.0027 33.3 18.0 92 250-344 236-331 (545)
265 KOG2314 Translation initiation 76.1 24 0.00052 39.1 10.7 194 156-357 280-502 (698)
266 KOG1310 WD40 repeat protein [G 76.1 8 0.00017 42.7 7.1 118 181-302 43-179 (758)
267 KOG0974 WD-repeat protein WDR6 75.2 32 0.00069 40.0 11.8 180 192-385 94-285 (967)
268 KOG0650 WD40 repeat nucleolar 74.7 47 0.001 37.2 12.4 248 101-380 415-682 (733)
269 KOG0642 Cell-cycle nuclear pro 73.3 9.7 0.00021 41.6 6.9 57 287-343 505-562 (577)
270 KOG0974 WD-repeat protein WDR6 73.1 15 0.00032 42.6 8.6 138 198-346 145-292 (967)
271 KOG2139 WD40 repeat protein [G 72.4 16 0.00035 38.6 8.1 129 205-342 117-268 (445)
272 PF04841 Vps16_N: Vps16, N-ter 71.6 19 0.00042 37.1 8.5 80 294-375 62-152 (410)
273 KOG2315 Predicted translation 70.7 23 0.00049 38.9 9.0 103 200-306 286-395 (566)
274 COG3391 Uncharacterized conser 70.5 1.3E+02 0.0028 30.6 17.3 160 186-347 74-244 (381)
275 KOG4714 Nucleoporin [Nuclear s 69.8 7.4 0.00016 39.5 4.8 116 178-302 134-255 (319)
276 KOG1524 WD40 repeat-containing 69.7 55 0.0012 36.5 11.5 125 197-337 115-250 (737)
277 PF14783 BBS2_Mid: Ciliary BBS 69.5 22 0.00047 31.4 7.1 58 284-344 16-73 (111)
278 PF10395 Utp8: Utp8 family; I 68.5 1.8E+02 0.0039 33.0 15.4 153 191-350 135-314 (670)
279 PF10395 Utp8: Utp8 family; I 67.7 89 0.0019 35.3 12.9 122 226-350 129-268 (670)
280 KOG1538 Uncharacterized conser 67.6 8.9 0.00019 43.3 5.3 68 275-344 17-85 (1081)
281 KOG0322 G-protein beta subunit 67.4 7.7 0.00017 39.5 4.4 59 197-257 262-322 (323)
282 COG5354 Uncharacterized protei 66.8 2.1E+02 0.0045 31.7 15.0 173 193-369 181-378 (561)
283 COG2706 3-carboxymuconate cycl 66.8 1.7E+02 0.0037 30.6 17.5 175 132-359 147-341 (346)
284 PF00780 CNH: CNH domain; Int 66.7 1.1E+02 0.0024 28.4 17.5 171 198-376 7-206 (275)
285 PF06977 SdiA-regulated: SdiA- 66.4 1.4E+02 0.003 29.4 17.3 101 227-331 118-239 (248)
286 PF02897 Peptidase_S9_N: Proly 63.9 1.6E+02 0.0035 29.4 18.6 151 190-344 174-360 (414)
287 PF03178 CPSF_A: CPSF A subuni 62.3 1.6E+02 0.0034 28.6 19.7 115 227-347 89-207 (321)
288 PF03022 MRJP: Major royal jel 61.6 1.4E+02 0.0031 29.4 11.9 100 228-328 2-124 (287)
289 PF06433 Me-amine-dh_H: Methyl 53.9 22 0.00048 36.8 5.0 59 208-267 269-329 (342)
290 TIGR02276 beta_rpt_yvtn 40-res 53.2 43 0.00093 22.4 4.9 39 282-321 2-41 (42)
291 PF15065 NCU-G1: Lysosomal tra 53.2 1.4E+02 0.0031 31.0 10.8 89 126-219 9-102 (350)
292 KOG0280 Uncharacterized conser 53.0 62 0.0013 33.5 7.9 67 276-342 171-241 (339)
293 PF14727 PHTB1_N: PTHB1 N-term 53.0 3.1E+02 0.0067 29.2 16.7 140 198-343 38-205 (418)
294 KOG1354 Serine/threonine prote 52.3 93 0.002 33.0 9.2 68 276-343 219-302 (433)
295 PF11768 DUF3312: Protein of u 52.3 3.7E+02 0.008 29.9 15.1 57 179-236 252-309 (545)
296 PF07569 Hira: TUP1-like enhan 51.7 27 0.00059 33.2 5.0 66 81-148 5-85 (219)
297 PF11347 DUF3148: Protein of u 51.5 22 0.00049 28.7 3.7 37 183-241 22-58 (63)
298 PF11715 Nup160: Nucleoporin N 51.4 95 0.0021 32.6 9.4 64 198-261 230-323 (547)
299 COG1499 NMD3 NMD protein affec 50.3 98 0.0021 32.3 9.0 89 255-343 227-322 (355)
300 TIGR02604 Piru_Ver_Nterm putat 50.0 2.8E+02 0.0061 27.8 12.8 26 179-205 6-32 (367)
301 KOG0309 Conserved WD40 repeat- 49.7 17 0.00038 41.5 3.8 109 192-343 121-233 (1081)
302 TIGR02276 beta_rpt_yvtn 40-res 49.5 76 0.0016 21.2 5.7 30 197-226 3-32 (42)
303 PF02897 Peptidase_S9_N: Proly 49.1 2.9E+02 0.0062 27.6 12.8 150 177-329 109-292 (414)
304 PF14783 BBS2_Mid: Ciliary BBS 48.3 2E+02 0.0043 25.5 11.3 100 189-338 6-110 (111)
305 KOG2139 WD40 repeat protein [G 48.1 94 0.002 33.2 8.5 111 227-343 196-310 (445)
306 KOG4649 PQQ (pyrrolo-quinoline 46.7 3.6E+02 0.0077 28.1 14.7 237 98-369 23-299 (354)
307 PF04435 SPK: Domain of unknow 46.5 20 0.00042 29.6 2.8 26 185-211 83-108 (109)
308 PF07995 GSDH: Glucose / Sorbo 45.6 53 0.0011 32.7 6.2 58 314-371 2-73 (331)
309 PF04841 Vps16_N: Vps16, N-ter 45.4 3.7E+02 0.008 27.9 15.7 54 188-244 83-146 (410)
310 PF03178 CPSF_A: CPSF A subuni 44.2 3.1E+02 0.0067 26.6 14.6 161 208-372 2-194 (321)
311 PF01436 NHL: NHL repeat; Int 44.1 44 0.00096 21.9 3.7 28 185-213 1-28 (28)
312 KOG3914 WD repeat protein WDR4 44.0 2.1E+02 0.0045 30.5 10.2 106 199-308 164-284 (390)
313 PF00930 DPPIV_N: Dipeptidyl p 43.4 1.1E+02 0.0024 30.3 8.1 87 249-338 22-127 (353)
314 COG1047 SlpA FKBP-type peptidy 42.1 19 0.00041 34.0 2.3 59 213-272 69-128 (174)
315 KOG1645 RING-finger-containing 41.9 1.4E+02 0.003 32.2 8.7 67 276-343 199-267 (463)
316 PF15492 Nbas_N: Neuroblastoma 41.3 2.7E+02 0.0058 28.5 10.3 112 271-386 44-176 (282)
317 COG3204 Uncharacterized protei 40.2 4.5E+02 0.0097 27.4 14.5 160 132-308 88-260 (316)
318 KOG3617 WD40 and TPR repeat-co 38.3 1E+02 0.0022 36.3 7.5 104 239-347 30-138 (1416)
319 COG5170 CDC55 Serine/threonine 38.2 67 0.0014 33.8 5.6 35 309-343 168-202 (460)
320 KOG0280 Uncharacterized conser 36.2 1.4E+02 0.003 31.1 7.4 67 192-302 172-242 (339)
321 KOG1240 Protein kinase contain 35.9 2.3E+02 0.0049 34.6 9.9 244 83-343 1043-1335(1431)
322 PF04053 Coatomer_WDAD: Coatom 34.1 6E+02 0.013 27.0 13.9 45 198-243 117-162 (443)
323 PF07433 DUF1513: Protein of u 34.1 1.6E+02 0.0035 30.2 7.6 60 186-246 217-276 (305)
324 PF08470 NTNH_C: Nontoxic nonh 34.1 1.1E+02 0.0024 28.8 5.8 105 222-334 30-142 (165)
325 PF07995 GSDH: Glucose / Sorbo 32.3 5.2E+02 0.011 25.8 14.7 57 185-244 1-71 (331)
326 PF13970 DUF4221: Domain of un 32.1 2.3E+02 0.0049 28.0 8.1 82 293-375 67-162 (333)
327 COG0823 TolB Periplasmic compo 31.8 6.4E+02 0.014 26.6 15.2 157 207-367 172-342 (425)
328 PF09465 LBR_tudor: Lamin-B re 31.7 34 0.00073 27.0 1.8 30 181-212 10-39 (55)
329 KOG1898 Splicing factor 3b, su 31.7 1E+03 0.022 29.0 14.5 232 90-353 26-275 (1205)
330 TIGR03075 PQQ_enz_alc_DH PQQ-d 31.0 7E+02 0.015 26.9 19.4 81 252-334 443-524 (527)
331 KOG1524 WD40 repeat-containing 30.8 49 0.0011 36.8 3.5 85 282-367 74-171 (737)
332 PF10313 DUF2415: Uncharacteri 30.8 93 0.002 23.3 3.9 29 191-219 6-37 (43)
333 PF14655 RAB3GAP2_N: Rab3 GTPa 30.4 1.8E+02 0.0039 30.9 7.4 69 282-350 318-407 (415)
334 KOG1064 RAVE (regulator of V-A 30.3 1E+02 0.0022 38.9 6.2 136 204-349 2226-2374(2439)
335 COG1520 FOG: WD40-like repeat 29.8 4.4E+02 0.0096 26.1 9.8 108 282-389 67-181 (370)
336 PF01453 B_lectin: D-mannose b 29.3 3.6E+02 0.0078 22.9 8.5 31 283-313 19-49 (114)
337 KOG1523 Actin-related protein 29.2 97 0.0021 32.4 5.1 80 191-296 61-146 (361)
338 PRK10737 FKBP-type peptidyl-pr 28.7 45 0.00097 31.9 2.5 59 213-272 68-127 (196)
339 PF14761 HPS3_N: Hermansky-Pud 28.6 1E+02 0.0022 30.1 5.0 53 296-349 1-56 (215)
340 KOG2444 WD40 repeat protein [G 28.5 81 0.0018 31.4 4.3 62 282-343 113-178 (238)
341 KOG4227 WD40 repeat protein [G 27.8 8.4E+02 0.018 26.8 15.0 213 131-354 58-287 (609)
342 PRK05560 DNA gyrase subunit A; 27.7 9.8E+02 0.021 27.5 16.7 156 93-257 493-672 (805)
343 PRK02888 nitrous-oxide reducta 27.5 9.4E+02 0.02 27.3 12.5 125 207-343 214-352 (635)
344 PRK15095 FKBP-type peptidyl-pr 27.2 59 0.0013 29.6 2.9 59 219-278 77-136 (156)
345 KOG4714 Nucleoporin [Nuclear s 26.9 7.3E+02 0.016 25.8 11.0 181 157-344 61-256 (319)
346 KOG4640 Anaphase-promoting com 26.4 1.9E+02 0.0041 32.7 7.0 73 190-266 25-100 (665)
347 TIGR00038 efp translation elon 25.9 2.5E+02 0.0055 26.3 6.9 104 184-293 52-178 (184)
348 PF09826 Beta_propel: Beta pro 25.8 8.9E+02 0.019 26.3 13.5 129 207-342 303-470 (521)
349 PF15492 Nbas_N: Neuroblastoma 25.3 7.5E+02 0.016 25.4 12.7 138 200-353 114-271 (282)
350 KOG2079 Vacuolar assembly/sort 25.2 1.7E+02 0.0037 35.0 6.6 59 254-323 124-182 (1206)
351 PF08553 VID27: VID27 cytoplas 25.2 9.1E+02 0.02 28.1 12.2 126 249-378 503-646 (794)
352 KOG4532 WD40-like repeat conta 24.2 4.6E+02 0.0099 27.3 8.7 95 284-378 129-231 (344)
353 KOG4190 Uncharacterized conser 24.0 2.6E+02 0.0056 31.7 7.4 113 270-387 732-857 (1034)
354 PF05096 Glu_cyclase_2: Glutam 23.9 7.6E+02 0.016 24.9 12.9 188 143-376 32-249 (264)
355 KOG1275 PAB-dependent poly(A) 23.7 7.1E+02 0.015 29.8 10.9 132 205-343 154-297 (1118)
356 PF00930 DPPIV_N: Dipeptidyl p 23.6 2.1E+02 0.0046 28.4 6.3 51 292-343 22-72 (353)
357 PRK03999 translation initiatio 23.4 5.3E+02 0.012 22.9 9.7 81 249-343 41-121 (129)
358 PF06433 Me-amine-dh_H: Methyl 23.4 1.8E+02 0.0038 30.4 5.8 65 250-316 269-335 (342)
359 KOG2695 WD40 repeat protein [G 23.1 3.9E+02 0.0084 28.6 8.1 97 158-268 281-386 (425)
360 KOG1898 Splicing factor 3b, su 23.1 4.5E+02 0.0097 31.7 9.3 144 197-374 599-756 (1205)
361 KOG2377 Uncharacterized conser 22.5 9.3E+02 0.02 27.0 11.0 114 236-366 43-169 (657)
362 smart00564 PQQ beta-propeller 21.5 1.4E+02 0.003 19.1 3.1 25 283-307 6-30 (33)
363 PF01011 PQQ: PQQ enzyme repea 21.3 1.6E+02 0.0034 20.2 3.5 24 285-308 2-25 (38)
364 KOG4649 PQQ (pyrrolo-quinoline 21.1 9.6E+02 0.021 25.1 11.2 137 251-393 74-220 (354)
365 PF07893 DUF1668: Protein of u 21.1 1.5E+02 0.0033 30.0 4.7 59 273-333 66-126 (342)
366 PF07433 DUF1513: Protein of u 20.2 9.6E+02 0.021 24.7 17.1 198 107-348 16-254 (305)
367 PF03498 CDtoxinA: Cytolethal 20.1 5.5E+02 0.012 23.6 7.8 115 252-375 2-142 (150)
368 smart00108 B_lectin Bulb-type 20.1 4E+02 0.0087 22.1 6.4 48 287-334 58-105 (114)
369 COG3386 Gluconolactonase [Carb 20.1 9.1E+02 0.02 24.4 13.2 56 316-371 215-277 (307)
370 KOG1645 RING-finger-containing 20.1 1.5E+02 0.0033 31.9 4.6 77 226-306 193-271 (463)
371 KOG0882 Cyclophilin-related pe 20.0 2.5E+02 0.0055 30.9 6.2 174 102-309 116-313 (558)
No 1
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.62 E-value=4.4e-13 Score=113.54 Aligned_cols=260 Identities=17% Similarity=0.248 Sum_probs=180.7
Q ss_pred cceEEEeecc--chhhhhhccccceeeeccccceEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehh
Q 016020 89 TKVIEIVAAR--DIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIE 166 (396)
Q Consensus 89 S~V~EIv~a~--dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~ 166 (396)
.+|..+-... +++++-...|....|+..+++.+..+..... .+.++-+...++.+++++. | ..++...+
T Consensus 10 ~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~---~--~~i~i~~~--- 80 (289)
T cd00200 10 GGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTG-PVRDVAASADGTYLASGSS---D--KTIRLWDL--- 80 (289)
T ss_pred CCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCc-ceeEEEECCCCCEEEEEcC---C--CeEEEEEc---
Confidence 4455554443 5666667789999999998887776654444 4555666655656666442 2 22322222
Q ss_pred hhhhCCCCCCCcceee-cccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEE
Q 016020 167 YIRRGKPDSGFALFES-ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIF 243 (396)
Q Consensus 167 ~i~~gk~~~~~~LF~~-~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~ 243 (396)
..++ ++.+- ..-..+-.+.|++ ++++++....++.+++||+.+.+.++.+.. ..+..+.++|+-.+++.
T Consensus 81 --~~~~-----~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 152 (289)
T cd00200 81 --ETGE-----CVRTLTGHTSYVSSVAFSP-DGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVAS 152 (289)
T ss_pred --Cccc-----ceEEEeccCCcEEEEEEcC-CCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEE
Confidence 1111 11111 0011234567777 478888888899999999999999999985 56999999995444454
Q ss_pred ecCCCeeeeEEEEeecCcEEEEEEeecccCCc---cchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEE
Q 016020 244 NRSSSHVPLKILSIEDGTVLKVFYHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFI 320 (396)
Q Consensus 244 q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFi 320 (396)
... .-.+.+|++.+++.+..+. .+... +.|.+ .+++|++...++.+++||+.+++.......+...+.+..
T Consensus 153 ~~~--~~~i~i~d~~~~~~~~~~~---~~~~~i~~~~~~~-~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~ 226 (289)
T cd00200 153 SSQ--DGTIKLWDLRTGKCVATLT---GHTGEVNSVAFSP-DGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVA 226 (289)
T ss_pred EcC--CCcEEEEEccccccceeEe---cCccccceEEECC-CcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEE
Confidence 442 3568999999999988877 33333 67766 667899999999999999999999888777778899999
Q ss_pred EeecCeEEEEEE-cCeEEEEecc-cceeeeeccccccCC---CCCCCcEEEccCCc
Q 016020 321 FLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHP---DCNTNNIYITSDQD 371 (396)
Q Consensus 321 Fly~~qLFLTfs-~gti~iWd~~-geL~t~fedh~l~~~---~c~~n~~~it~~qd 371 (396)
|.+++.++++.+ +|+|.+||.. ++.+..+..|..... ..++++++++...|
T Consensus 227 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 282 (289)
T cd00200 227 FSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSAD 282 (289)
T ss_pred EcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCC
Confidence 999999999998 7999999998 467777776642211 14455666665555
No 2
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.53 E-value=3.2e-13 Score=136.78 Aligned_cols=181 Identities=18% Similarity=0.308 Sum_probs=157.3
Q ss_pred EEeeCCCCcEEEeecCCCeEEEEeccCce--EEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEe-ecCcEEEE
Q 016020 191 VEFDDVNGKVLTYSAQDSIYKVFDLKNYT--MLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSI-EDGTVLKV 265 (396)
Q Consensus 191 VEFDd~NgkIlt~~a~d~~YrVwdlknYs--~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~I-etG~~l~s 265 (396)
+.|.+ +|+.+++.++++..++|++.+.+ .+..+.+ ..|.+++|||+--.++.... ++.|+|||+ ++|..++.
T Consensus 165 ~~fs~-~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~--D~tiriwd~~~~~~~~~~ 241 (456)
T KOG0266|consen 165 VDFSP-DGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSD--DKTLRIWDLKDDGRNLKT 241 (456)
T ss_pred EEEcC-CCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecC--CceEEEeeccCCCeEEEE
Confidence 67888 89999999999999999999998 8888855 89999999999877777666 899999999 77789999
Q ss_pred EEeecccCCc---cchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc-CeEEEEec
Q 016020 266 FYHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNF 341 (396)
Q Consensus 266 ~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~ 341 (396)
++ +|... ++|.+ .++.|+....|+.++|||+.++++.++..+|....++--|.++++++++.+. |.|.|||.
T Consensus 242 l~---gH~~~v~~~~f~p-~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~ 317 (456)
T KOG0266|consen 242 LK---GHSTYVTSVAFSP-DGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDL 317 (456)
T ss_pred ec---CCCCceEEEEecC-CCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEEC
Confidence 98 77777 99999 5599999999999999999999999999999999999999999999999995 99999999
Q ss_pred ccce---eeeecccccc-----CCCCCCCcEEEccCCcEEEEecc
Q 016020 342 RGEL---VTSFEDHLLW-----HPDCNTNNIYITSDQDLIISYCK 378 (396)
Q Consensus 342 ~geL---~t~fedh~l~-----~~~c~~n~~~it~~qd~ii~~~~ 378 (396)
.... +..+.++.-. ...++++++.++..-|--+.+-+
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~ 362 (456)
T KOG0266|consen 318 ETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWD 362 (456)
T ss_pred CCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEE
Confidence 9954 3455555444 33489999999998886666633
No 3
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.49 E-value=1.1e-11 Score=132.60 Aligned_cols=256 Identities=16% Similarity=0.213 Sum_probs=172.9
Q ss_pred cccceeeeccccceEEEecCC----CCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhh-hhCCCCCCCccee
Q 016020 107 SGVCAAFSRETNRRICFLNVS----PDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYI-RRGKPDSGFALFE 181 (396)
Q Consensus 107 sG~c~af~~~t~~~ic~lN~s----~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i-~~gk~~~~~~LF~ 181 (396)
+|+|...+..+-+....++.. +...|.++=++.+.+-+++.+ .|. .++ .-..+.. ..++ +...|..+
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg---~D~--~I~--iwd~~~~~~~~~-~~~~~~~~ 528 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAG---VNK--KIK--IFECESIIKDGR-DIHYPVVE 528 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEe---CCC--EEE--EEECCccccccc-ccccceEE
Confidence 677888776655555555543 577899999997766555543 122 222 2222211 1111 11112221
Q ss_pred ecccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcC-CeEEEEEecCCCeeeeEEEEee
Q 016020 182 SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISP-GIMLLIFNRSSSHVPLKILSIE 258 (396)
Q Consensus 182 ~~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSp-g~~Ll~~q~~~~~iplkIl~Ie 258 (396)
-..-.....+-|++..+..++....|+.++|||+.+.+.+..+.+ ..|..+.++| +-.+|+.... +..++|||+.
T Consensus 529 ~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~--Dg~v~iWd~~ 606 (793)
T PLN00181 529 LASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSD--DGSVKLWSIN 606 (793)
T ss_pred ecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcC--CCEEEEEECC
Confidence 111111234566666678899899999999999999998888865 7799999985 4444555555 5679999999
Q ss_pred cCcEEEEEEeecccCCccchhhhhcceeeEeecCCeeeEEEcccce-EEEecccccCCCceEEEeecCeEEEEEEc-CeE
Q 016020 259 DGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE-LMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTV 336 (396)
Q Consensus 259 tG~~l~s~~~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~k-i~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti 336 (396)
+|+.++.+... ..-..+.|....+.+|++...|+.|++||+++.+ .+.+..+|.....+.-|. +++.++|.+. ++|
T Consensus 607 ~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~i 684 (793)
T PLN00181 607 QGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTL 684 (793)
T ss_pred CCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEE
Confidence 99999887631 1112367766678999999999999999999876 355667888888888887 6667777776 899
Q ss_pred EEEecc-------cceeeeeccccccCC---CCCCCcEEEccCCcEEE
Q 016020 337 AVWNFR-------GELVTSFEDHLLWHP---DCNTNNIYITSDQDLII 374 (396)
Q Consensus 337 ~iWd~~-------geL~t~fedh~l~~~---~c~~n~~~it~~qd~ii 374 (396)
++||++ +..+..|++|.-+.. ..+++.+++|..+|=-|
T Consensus 685 kiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v 732 (793)
T PLN00181 685 KLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEV 732 (793)
T ss_pred EEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEE
Confidence 999996 246778888864322 25667777777655433
No 4
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.42 E-value=2.3e-11 Score=103.10 Aligned_cols=157 Identities=18% Similarity=0.334 Sum_probs=126.3
Q ss_pred eEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEE
Q 016020 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFY 267 (396)
Q Consensus 190 fVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~ 267 (396)
.+.|++ +|+.++....++.+++||+.+.+.+..+.. ..+..+.++|+--.++.... ...++||++++++.+..+.
T Consensus 14 ~~~~~~-~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--~~~i~i~~~~~~~~~~~~~ 90 (289)
T cd00200 14 CVAFSP-DGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSS--DKTIRLWDLETGECVRTLT 90 (289)
T ss_pred EEEEcC-CCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcC--CCeEEEEEcCcccceEEEe
Confidence 456777 577888788899999999999887777765 67789999988744454444 5678999999998888776
Q ss_pred eecccCCc---cchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEE-cCeEEEEeccc
Q 016020 268 HLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRG 343 (396)
Q Consensus 268 ~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs-~gti~iWd~~g 343 (396)
.+... +.|.+. ++.++....++.+.+||+.+++.......+...+.+..|.++++++++.+ +|.|.+||.+.
T Consensus 91 ---~~~~~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~ 166 (289)
T cd00200 91 ---GHTSYVSSVAFSPD-GRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRT 166 (289)
T ss_pred ---ccCCcEEEEEEcCC-CCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccc
Confidence 33333 667764 66777777799999999999888888778888899999999999988888 79999999984
Q ss_pred -ceeeeecccc
Q 016020 344 -ELVTSFEDHL 353 (396)
Q Consensus 344 -eL~t~fedh~ 353 (396)
+.+..++.|.
T Consensus 167 ~~~~~~~~~~~ 177 (289)
T cd00200 167 GKCVATLTGHT 177 (289)
T ss_pred cccceeEecCc
Confidence 7777888775
No 5
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.37 E-value=2.5e-11 Score=123.13 Aligned_cols=188 Identities=18% Similarity=0.304 Sum_probs=150.7
Q ss_pred EEeeCCCCcEEEeecCCCeEEEEec-cCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEE
Q 016020 191 VEFDDVNGKVLTYSAQDSIYKVFDL-KNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFY 267 (396)
Q Consensus 191 VEFDd~NgkIlt~~a~d~~YrVwdl-knYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~ 267 (396)
+-|.+ .|+.++..+.|.++|+||+ .++.+++++.+ ..|..+.|+|.-.+++.... +-.++||++.+|+.+..+.
T Consensus 209 ~~fs~-d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~--D~tvriWd~~~~~~~~~l~ 285 (456)
T KOG0266|consen 209 VAFSP-DGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSD--DGTVRIWDVRTGECVRKLK 285 (456)
T ss_pred eEECC-CCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecC--CCcEEEEeccCCeEEEeee
Confidence 44556 7889999999999999999 88899999988 89999999988888888777 7889999999999999998
Q ss_pred eecccCCc---cchhhhhcceeeEeecCCeeeEEEcccceE--EE-ecccccC-CCceEEEeecCeEEEEEEc-CeEEEE
Q 016020 268 HLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNAEL--ME-VSRTEFM-TPSAFIFLYENQLFLTFRN-RTVAVW 339 (396)
Q Consensus 268 ~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki--~~-v~~t~~~-~PsAFiFly~~qLFLTfs~-gti~iW 339 (396)
+|+.. ++|.+ .+.+|+..+.|+.|+|||+.++++ .+ +...+.- +.+...|.+++..+++... +++++|
T Consensus 286 ---~hs~~is~~~f~~-d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w 361 (456)
T KOG0266|consen 286 ---GHSDGISGLAFSP-DGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLW 361 (456)
T ss_pred ---ccCCceEEEEECC-CCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEE
Confidence 66666 67988 999999999999999999999994 44 4444433 5788899999999999998 599999
Q ss_pred eccc-ceeeeeccccccCCCCCCCcEEEccCCcEEEEeccCCCCCcccc
Q 016020 340 NFRG-ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWME 387 (396)
Q Consensus 340 d~~g-eL~t~fedh~l~~~~c~~n~~~it~~qd~ii~~~~~~~~~~~~~ 387 (396)
|++. ..+..+..|..-. .|.....+ +...-+|++.++.-.-..|.-
T Consensus 362 ~l~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~i~sg~~d~~v~~~~~ 408 (456)
T KOG0266|consen 362 DLRSGKSVGTYTGHSNLV-RCIFSPTL-STGGKLIYSGSEDGSVYVWDS 408 (456)
T ss_pred EccCCcceeeecccCCcc-eeEecccc-cCCCCeEEEEeCCceEEEEeC
Confidence 9995 6666676666642 56666666 445555666655554444433
No 6
>PTZ00421 coronin; Provisional
Probab=99.31 E-value=1.9e-10 Score=119.11 Aligned_cols=164 Identities=15% Similarity=0.280 Sum_probs=125.1
Q ss_pred hCCCCCCCcceeecccCCCC---eEEeeCCCCcEEEeecCCCeEEEEeccCce-------EEEEecc--CceEEEEEcCC
Q 016020 170 RGKPDSGFALFESESLKWPG---FVEFDDVNGKVLTYSAQDSIYKVFDLKNYT-------MLYSISD--KHVQEIKISPG 237 (396)
Q Consensus 170 ~gk~~~~~~LF~~~~l~~Pg---fVEFDd~NgkIlt~~a~d~~YrVwdlknYs-------~lysIs~--~~VqEIkiSpg 237 (396)
.|++...-|++.. |-| -+.|++.++..|+..+.|+.++|||+.+.. .+..+.+ ..|..++++|.
T Consensus 61 ~G~~~~~~~~l~G----H~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~ 136 (493)
T PTZ00421 61 YGKLASNPPILLG----QEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPS 136 (493)
T ss_pred cccCCCCCceEeC----CCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcC
Confidence 4665555566542 333 467888788899999999999999997652 4566665 77999999986
Q ss_pred e-EEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCc---cchhhhhcceeeEeecCCeeeEEEcccceEEEeccccc
Q 016020 238 I-MLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEF 313 (396)
Q Consensus 238 ~-~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~ 313 (396)
. .+|+.... +..++|||+++|+.+..+. .|... +.|.+ .+..|+....|+.|+|||+++++.+.....|.
T Consensus 137 ~~~iLaSgs~--DgtVrIWDl~tg~~~~~l~---~h~~~V~sla~sp-dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~ 210 (493)
T PTZ00421 137 AMNVLASAGA--DMVVNVWDVERGKAVEVIK---CHSDQITSLEWNL-DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHA 210 (493)
T ss_pred CCCEEEEEeC--CCEEEEEECCCCeEEEEEc---CCCCceEEEEEEC-CCCEEEEecCCCEEEEEECCCCcEEEEEecCC
Confidence 4 45555554 5779999999999887766 44444 77777 78999999999999999999999887666664
Q ss_pred C-CCceEEEeecCeEEEEEE-----cCeEEEEeccc
Q 016020 314 M-TPSAFIFLYENQLFLTFR-----NRTVAVWNFRG 343 (396)
Q Consensus 314 ~-~PsAFiFly~~qLFLTfs-----~gti~iWd~~g 343 (396)
. .+...+|.+++.+++|.. +|+|.+||.+.
T Consensus 211 ~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~ 246 (493)
T PTZ00421 211 SAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRK 246 (493)
T ss_pred CCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCC
Confidence 3 344677888888888753 58999999985
No 7
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.31 E-value=2e-09 Score=96.26 Aligned_cols=248 Identities=12% Similarity=0.194 Sum_probs=152.5
Q ss_pred hhhhhccccceeeeccccceEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcce
Q 016020 101 VFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALF 180 (396)
Q Consensus 101 i~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF 180 (396)
++.-...|...+||..|++.+..++... -++++-++.....++++ .. .++ .+ +.... ..|+. ...+
T Consensus 4 ~~s~~~d~~v~~~d~~t~~~~~~~~~~~--~~~~l~~~~dg~~l~~~-~~-~~~--~v--~~~d~---~~~~~---~~~~ 69 (300)
T TIGR03866 4 YVSNEKDNTISVIDTATLEVTRTFPVGQ--RPRGITLSKDGKLLYVC-AS-DSD--TI--QVIDL---ATGEV---IGTL 69 (300)
T ss_pred EEEecCCCEEEEEECCCCceEEEEECCC--CCCceEECCCCCEEEEE-EC-CCC--eE--EEEEC---CCCcE---EEec
Confidence 3344567889999999999888887532 35677777665554332 21 121 12 22211 11111 0011
Q ss_pred eecccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc-CceEEEEEcCCeEEEEEecCCCeeeeEEEEeec
Q 016020 181 ESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-KHVQEIKISPGIMLLIFNRSSSHVPLKILSIED 259 (396)
Q Consensus 181 ~~~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~-~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~Iet 259 (396)
.. -..|..+.|++....+.+.+..++.+++||+++.+.+..+.. ..+..+.++|+-.+++...... --+.+|+..+
T Consensus 70 ~~--~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~-~~~~~~d~~~ 146 (300)
T TIGR03866 70 PS--GPDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETT-NMAHFIDTKT 146 (300)
T ss_pred cC--CCCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCC-CeEEEEeCCC
Confidence 11 123566788874445656677899999999999998888873 5678899997554444333321 1245679988
Q ss_pred CcEEEEEEeecccCCccchhhhhcceeeEe-ecCCeeeEEEcccceEEEecc-------cccCCCceEEEeecCeE-EEE
Q 016020 260 GTVLKVFYHLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNAELMEVSR-------TEFMTPSAFIFLYENQL-FLT 330 (396)
Q Consensus 260 G~~l~s~~~~L~~sk~i~FiE~~~ekLLIK-Qed~~L~I~Dv~~~ki~~v~~-------t~~~~PsAFiFly~~qL-FLT 330 (396)
|+.+...... .+...+.|.+ .+.+|++. +.++.+.+||+.++++..... .....|..+.|.++++. |++
T Consensus 147 ~~~~~~~~~~-~~~~~~~~s~-dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~ 224 (300)
T TIGR03866 147 YEIVDNVLVD-QRPRFAEFTA-DGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVA 224 (300)
T ss_pred CeEEEEEEcC-CCccEEEECC-CCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEE
Confidence 8877654311 1223367766 67888655 468899999999998765322 12345677889998875 676
Q ss_pred EE-cCeEEEEeccc-ceeeee-ccccccCCC-CCCCcEEEc
Q 016020 331 FR-NRTVAVWNFRG-ELVTSF-EDHLLWHPD-CNTNNIYIT 367 (396)
Q Consensus 331 fs-~gti~iWd~~g-eL~t~f-edh~l~~~~-c~~n~~~it 367 (396)
.. ++++.+||.+. +++..+ .++..+... .++++..++
T Consensus 225 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~ 265 (300)
T TIGR03866 225 LGPANRVAVVDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLT 265 (300)
T ss_pred cCCCCeEEEEECCCCcEEEEEEeCCCcceEEECCCCCEEEE
Confidence 65 47899999986 554433 345444322 566665443
No 8
>PTZ00420 coronin; Provisional
Probab=99.30 E-value=1.8e-10 Score=121.70 Aligned_cols=188 Identities=14% Similarity=0.179 Sum_probs=136.2
Q ss_pred eEEeeCCCCcEEEeecCCCeEEEEeccCce--------EEEEecc--CceEEEEEcCCe-EEEEEecCCCeeeeEEEEee
Q 016020 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYT--------MLYSISD--KHVQEIKISPGI-MLLIFNRSSSHVPLKILSIE 258 (396)
Q Consensus 190 fVEFDd~NgkIlt~~a~d~~YrVwdlknYs--------~lysIs~--~~VqEIkiSpg~-~Ll~~q~~~~~iplkIl~Ie 258 (396)
-+.|++.++..|+..+.|+.+||||+.+.. .+..+.+ ..|..|.|+|.. .+|+.... +..++|||+.
T Consensus 79 ~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~--DgtIrIWDl~ 156 (568)
T PTZ00420 79 DLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGF--DSFVNIWDIE 156 (568)
T ss_pred EEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeC--CCeEEEEECC
Confidence 457887678899999999999999998642 2334443 789999999854 55555554 5789999999
Q ss_pred cCcEEEEEEeecccCCccchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCce-EE----EeecCeEEEEEEc
Q 016020 259 DGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSA-FI----FLYENQLFLTFRN 333 (396)
Q Consensus 259 tG~~l~s~~~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsA-Fi----Fly~~qLFLTfs~ 333 (396)
+|+.+..+.+. ..-..+.|.+ .|..|+....|+.|+|||++++++.....+|.....+ -+ |.++++.++|...
T Consensus 157 tg~~~~~i~~~-~~V~Slswsp-dG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~ 234 (568)
T PTZ00420 157 NEKRAFQINMP-KKLSSLKWNI-KGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGF 234 (568)
T ss_pred CCcEEEEEecC-CcEEEEEECC-CCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEc
Confidence 99988776521 1122377777 7889988989999999999999998877777654322 22 2378888887653
Q ss_pred -----CeEEEEeccc--ceeeeec--cc---cccCCCCCCCcEEEccCCcEEEEeccCCC
Q 016020 334 -----RTVAVWNFRG--ELVTSFE--DH---LLWHPDCNTNNIYITSDQDLIISYCKAEP 381 (396)
Q Consensus 334 -----gti~iWd~~g--eL~t~fe--dh---~l~~~~c~~n~~~it~~qd~ii~~~~~~~ 381 (396)
|+|.|||++. +.++.++ .+ +.+.-+-.++.+|+++.-|--|-|+....
T Consensus 235 d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~ 294 (568)
T PTZ00420 235 SKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSL 294 (568)
T ss_pred CCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccC
Confidence 4899999994 4444433 22 22344466799999998888888877643
No 9
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.23 E-value=1.6e-10 Score=117.98 Aligned_cols=236 Identities=18% Similarity=0.169 Sum_probs=189.9
Q ss_pred ccchhhhhhccccceeeeccccceEEEecCCCCceEEEEeeec-CCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCC
Q 016020 97 ARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNK-NNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDS 175 (396)
Q Consensus 97 a~dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~-~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~ 175 (396)
..++|+--.-+|.|.+++..+.+.+|.|-.-..+|.--.|+-. .+.++++.|.- + +.|--.++.
T Consensus 186 ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~D---g--tvklw~~~~---------- 250 (459)
T KOG0272|consen 186 DSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASAD---G--TVKLWKLSQ---------- 250 (459)
T ss_pred CCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccC---C--ceeeeccCC----------
Confidence 3577788889999999999999999999999999999889988 46788886532 2 222222222
Q ss_pred CCccee-ecccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeee
Q 016020 176 GFALFE-SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPL 252 (396)
Q Consensus 176 ~~~LF~-~~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~ipl 252 (396)
..||=+ ..-+..=+=|-|-+ +|+-|+.-+-|.+-|+||+.+.+.+---.+ +.|.+|.+-++=-|+.+.+- +-.-
T Consensus 251 e~~l~~l~gH~~RVs~VafHP-sG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGl--D~~~ 327 (459)
T KOG0272|consen 251 ETPLQDLEGHLARVSRVAFHP-SGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGL--DSLG 327 (459)
T ss_pred CcchhhhhcchhhheeeeecC-CCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCc--cchh
Confidence 222211 11223345578888 999999999999999999999997666666 99999999866555566665 5667
Q ss_pred EEEEeecCcEEEEEEeecccCCc---cchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEee-cCeEE
Q 016020 253 KILSIEDGTVLKVFYHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLY-ENQLF 328 (396)
Q Consensus 253 kIl~IetG~~l~s~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly-~~qLF 328 (396)
+|||+-||..++-|. +|.++ |+|.+ -|-.|.....|...+|||++-++...+-++|.+.++-.-|.+ .|...
T Consensus 328 RvWDlRtgr~im~L~---gH~k~I~~V~fsP-NGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL 403 (459)
T KOG0272|consen 328 RVWDLRTGRCIMFLA---GHIKEILSVAFSP-NGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFL 403 (459)
T ss_pred heeecccCcEEEEec---ccccceeeEeECC-CceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEE
Confidence 999999999999888 88898 89999 777888899999999999999999999999999999999998 55556
Q ss_pred EEEEc-CeEEEEeccc-ceeeeeccccc
Q 016020 329 LTFRN-RTVAVWNFRG-ELVTSFEDHLL 354 (396)
Q Consensus 329 LTfs~-gti~iWd~~g-eL~t~fedh~l 354 (396)
+|.+. ++++||...+ +++.++-+|.-
T Consensus 404 ~TasyD~t~kiWs~~~~~~~ksLaGHe~ 431 (459)
T KOG0272|consen 404 VTASYDNTVKIWSTRTWSPLKSLAGHEG 431 (459)
T ss_pred EEcccCcceeeecCCCcccchhhcCCcc
Confidence 66666 8999999999 89889888853
No 10
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.22 E-value=8.9e-11 Score=125.58 Aligned_cols=233 Identities=19% Similarity=0.168 Sum_probs=173.9
Q ss_pred chhhhhhccccceeeeccccceEEEecCCCCceEEEEeeecCCCeEEEEEeEec-------CCCceee------eEeeeh
Q 016020 99 DIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYAS-------DNFSSLK------CRSTKI 165 (396)
Q Consensus 99 dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~s-------d~~s~L~------cr~~~~ 165 (396)
+.+++-+.|+--+.|+.-| .-|.|=+.++|+|-|+---..++-|++.|=-.| ++++..- |++-++
T Consensus 337 ~~laVATNs~~lr~y~~~~--~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~sv 414 (775)
T KOG0319|consen 337 SHLAVATNSPELRLYTLPT--SYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSV 414 (775)
T ss_pred ceEEEEeCCCceEEEecCC--CceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhccccccc
Confidence 5667777888888885544 478888999998888874444444444331111 2222221 222222
Q ss_pred hhh------------------------hhCCCCCCCcceeeccc-----CCCCeEEeeCCCCcEEEeecCCCeEEEEecc
Q 016020 166 EYI------------------------RRGKPDSGFALFESESL-----KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLK 216 (396)
Q Consensus 166 ~~i------------------------~~gk~~~~~~LF~~~~l-----~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlk 216 (396)
-.+ ..-|..+.-+.|...+- |-=--|+..+ |.+.+|-.+||++-|+|++.
T Consensus 415 gava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~-ndkLiAT~SqDktaKiW~le 493 (775)
T KOG0319|consen 415 GAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP-NDKLIATGSQDKTAKIWDLE 493 (775)
T ss_pred ceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecC-CCceEEecccccceeeeccc
Confidence 111 11111111123321100 1112377777 99999999999999999999
Q ss_pred CceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCc---cchhhhhcceeeEeec
Q 016020 217 NYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKK---VDFIEQFNEKLLVKQE 291 (396)
Q Consensus 217 nYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~---i~FiE~~~ekLLIKQe 291 (396)
+-..+-.+++ ..|++|+|||.-.+|...+. +..+|||+|+|+.++++|. +|+.- ++|+- .+++|+..--
T Consensus 494 ~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~Sg--D~TvKIW~is~fSClkT~e---GH~~aVlra~F~~-~~~qliS~~a 567 (775)
T KOG0319|consen 494 QLRLLGVLSGHTRGVWCVSFSKNDQLLATCSG--DKTVKIWSISTFSCLKTFE---GHTSAVLRASFIR-NGKQLISAGA 567 (775)
T ss_pred CceEEEEeeCCccceEEEEeccccceeEeccC--CceEEEEEeccceeeeeec---CccceeEeeeeee-CCcEEEeccC
Confidence 9999999999 99999999999888888777 8999999999999999999 66655 88998 9999999999
Q ss_pred CCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc-CeEEEEe
Q 016020 292 NENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWN 340 (396)
Q Consensus 292 d~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd 340 (396)
|+-|+|||+.|++|..++..|.+..-|+.=.+...-|+|-.. |.|-+|-
T Consensus 568 dGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 568 DGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWK 617 (775)
T ss_pred CCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEee
Confidence 999999999999999999999999999999999998887765 8999994
No 11
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.17 E-value=6.5e-10 Score=109.24 Aligned_cols=154 Identities=18% Similarity=0.268 Sum_probs=131.0
Q ss_pred CCcEEEeecCCCeEEEEeccCc-----eEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEee
Q 016020 197 NGKVLTYSAQDSIYKVFDLKNY-----TMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHL 269 (396)
Q Consensus 197 NgkIlt~~a~d~~YrVwdlknY-----s~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~ 269 (396)
+-.++...+-|...-+|+|.-= .-+..+.+ ..|.++.+|++...+++.+- +..+++||+++|+..-.|.
T Consensus 27 ~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~sw--D~~lrlWDl~~g~~t~~f~-- 102 (315)
T KOG0279|consen 27 NSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASW--DGTLRLWDLATGESTRRFV-- 102 (315)
T ss_pred CCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccc--cceEEEEEecCCcEEEEEE--
Confidence 3456666677999999998532 24666666 78999999988887776665 8999999999998887777
Q ss_pred cccCCc---cchhhhhcceeeEeecCCeeeEEEcccceEEEecccc-cCCCceEEEeec--CeEEEEEEc-CeEEEEecc
Q 016020 270 LHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTE-FMTPSAFIFLYE--NQLFLTFRN-RTVAVWNFR 342 (396)
Q Consensus 270 L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~-~~~PsAFiFly~--~qLFLTfs~-gti~iWd~~ 342 (396)
.|++. ++|.. .+.+|..+..|..|++||+...-.+++...- .++.+++.|+|. +-.+++-++ +++++||++
T Consensus 103 -GH~~dVlsva~s~-dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~ 180 (315)
T KOG0279|consen 103 -GHTKDVLSVAFST-DNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLR 180 (315)
T ss_pred -ecCCceEEEEecC-CCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccC
Confidence 89888 89888 9999999999999999999999888887765 899999999998 677888888 899999999
Q ss_pred c-ceeeeeccccccC
Q 016020 343 G-ELVTSFEDHLLWH 356 (396)
Q Consensus 343 g-eL~t~fedh~l~~ 356 (396)
+ ++.++|=+|.-+.
T Consensus 181 ~~~l~~~~~gh~~~v 195 (315)
T KOG0279|consen 181 NCQLRTTFIGHSGYV 195 (315)
T ss_pred CcchhhccccccccE
Confidence 9 7999999887664
No 12
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.12 E-value=2.6e-09 Score=107.78 Aligned_cols=245 Identities=14% Similarity=0.180 Sum_probs=175.3
Q ss_pred cccceEEEeec-cchhhhhh-ccccceeeeccccceEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeee
Q 016020 87 KRTKVIEIVAA-RDIVFALA-HSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTK 164 (396)
Q Consensus 87 ~RS~V~EIv~a-~dii~~L~-~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~ 164 (396)
-|++|.-++.- ...+++++ +.+.-.+||.+||+..--|-.-.+. +-+|=|--...-|++.| +.|...-..
T Consensus 107 ~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~s-v~di~~~a~Gk~l~tcS-------sDl~~~LWd 178 (406)
T KOG0295|consen 107 HRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDS-VFDISFDASGKYLATCS-------SDLSAKLWD 178 (406)
T ss_pred cccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccc-eeEEEEecCccEEEecC-------Cccchhhee
Confidence 68889888886 45566666 7899999999999886666555555 55555554555566554 223222222
Q ss_pred ----hhhhhhCCCCCCCcceeecccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCe
Q 016020 165 ----IEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGI 238 (396)
Q Consensus 165 ----~~~i~~gk~~~~~~LF~~~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~ 238 (396)
.++|+. ..|. ...+..| -|=+ .|.-+.+++-|.+||.|+..+.-++|.+.+ |=|.-|++..+=
T Consensus 179 ~~~~~~c~ks---~~gh----~h~vS~V---~f~P-~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DG 247 (406)
T KOG0295|consen 179 FDTFFRCIKS---LIGH----EHGVSSV---FFLP-LGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDG 247 (406)
T ss_pred HHHHHHHHHH---hcCc----ccceeeE---EEEe-cCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCe
Confidence 233332 1111 1222222 2333 357788899999999999999999999999 889999999665
Q ss_pred EEEEEecCCCeeeeEEEEeecCcEEEEEEe---------ecccCCccchhhhhcc-----eeeEeecCCeeeEEEcccce
Q 016020 239 MLLIFNRSSSHVPLKILSIEDGTVLKVFYH---------LLHRNKKVDFIEQFNE-----KLLVKQENENLQILDVRNAE 304 (396)
Q Consensus 239 ~Ll~~q~~~~~iplkIl~IetG~~l~s~~~---------~L~~sk~i~FiE~~~e-----kLLIKQed~~L~I~Dv~~~k 304 (396)
-|+.+ ..++-.+.+|.+.++++...+.- .-|-+...+-.|+.++ +|..+..|..|+||||-++.
T Consensus 248 ti~As--~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~ 325 (406)
T KOG0295|consen 248 TIIAS--CSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGM 325 (406)
T ss_pred eEEEe--cCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCe
Confidence 54444 44588899999999955543331 1123333444566664 99999999999999999999
Q ss_pred EEEecccccCCCceEEEeecCeEEEEEEc-CeEEEEeccc-ceeeeeccc
Q 016020 305 LMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNFRG-ELVTSFEDH 352 (396)
Q Consensus 305 i~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~~g-eL~t~fedh 352 (396)
|+-++-+|.++.+...|.+.|+..++..+ +|+.+||++- +-.-++|-|
T Consensus 326 cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah 375 (406)
T KOG0295|consen 326 CLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAH 375 (406)
T ss_pred EEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCC
Confidence 99999999999999999999999999999 8999999998 433344444
No 13
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.10 E-value=2.3e-10 Score=116.75 Aligned_cols=165 Identities=15% Similarity=0.132 Sum_probs=142.1
Q ss_pred CCCeEEeeCC-CCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEE
Q 016020 187 WPGFVEFDDV-NGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVL 263 (396)
Q Consensus 187 ~PgfVEFDd~-NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l 263 (396)
+-|=++|-|+ +++-+|..+.|++.|+|++.+=+.|=.|.+ ..|..++|-|+=..|....- +..-.|||++||+++
T Consensus 219 ~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~Tasf--D~tWRlWD~~tk~El 296 (459)
T KOG0272|consen 219 RVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASF--DSTWRLWDLETKSEL 296 (459)
T ss_pred ceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeeccc--ccchhhcccccchhh
Confidence 3466788888 799999999999999999999999999988 89999999976655555555 689999999999998
Q ss_pred EEEEeecccCCc---cchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc-CeEEEE
Q 016020 264 KVFYHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVW 339 (396)
Q Consensus 264 ~s~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iW 339 (396)
--.. +|++. |.|-. +|+-+..+--|.-=+|||++|+.++-++.+|-...-+.=|.|+|...-|=|. ++++||
T Consensus 297 L~QE---GHs~~v~~iaf~~-DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVW 372 (459)
T KOG0272|consen 297 LLQE---GHSKGVFSIAFQP-DGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVW 372 (459)
T ss_pred Hhhc---ccccccceeEecC-CCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEe
Confidence 8666 77777 77766 9999999999999999999999999999999999999999999999999887 999999
Q ss_pred eccc-ceeeeeccccccCC
Q 016020 340 NFRG-ELVTSFEDHLLWHP 357 (396)
Q Consensus 340 d~~g-eL~t~fedh~l~~~ 357 (396)
|+++ ..+-.+-.|---+.
T Consensus 373 DLR~r~~ly~ipAH~nlVS 391 (459)
T KOG0272|consen 373 DLRMRSELYTIPAHSNLVS 391 (459)
T ss_pred eecccccceecccccchhh
Confidence 9999 45555555544433
No 14
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.08 E-value=1.4e-09 Score=116.72 Aligned_cols=173 Identities=13% Similarity=0.229 Sum_probs=146.6
Q ss_pred EeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEee
Q 016020 192 EFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHL 269 (396)
Q Consensus 192 EFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~ 269 (396)
-|.+ --|-|.++++|++.|+|+|.+.+++..-++ .-||+++|+|--.-+++.++ +-...+|+...-+++..|.
T Consensus 458 sFsP-d~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~--D~tArLWs~d~~~PlRifa-- 532 (707)
T KOG0263|consen 458 SFSP-DRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASH--DQTARLWSTDHNKPLRIFA-- 532 (707)
T ss_pred eecc-cccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCC--CceeeeeecccCCchhhhc--
Confidence 4666 567888999999999999999998887777 88999999998777677655 7778999988855555444
Q ss_pred cccCCc---cchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc-CeEEEEeccc-c
Q 016020 270 LHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNFRG-E 344 (396)
Q Consensus 270 L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~~g-e 344 (396)
.|.++ +.|=+ -..|+..+.-|...|+||+.+|...++=.+|.-+..|..|++.+....+-+. |.|.+||..+ .
T Consensus 533 -ghlsDV~cv~FHP-Ns~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~ 610 (707)
T KOG0263|consen 533 -GHLSDVDCVSFHP-NSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGS 610 (707)
T ss_pred -ccccccceEEECC-cccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCc
Confidence 88888 55877 7889999999999999999999999999999999999999998888888777 9999999999 7
Q ss_pred eeeeecccccc---CCCCCCCcEEEccCCc
Q 016020 345 LVTSFEDHLLW---HPDCNTNNIYITSDQD 371 (396)
Q Consensus 345 L~t~fedh~l~---~~~c~~n~~~it~~qd 371 (396)
++..|=+|--- ..+|.+|++.+++.+|
T Consensus 611 ~v~~l~~Ht~ti~SlsFS~dg~vLasgg~D 640 (707)
T KOG0263|consen 611 LVKQLKGHTGTIYSLSFSRDGNVLASGGAD 640 (707)
T ss_pred chhhhhcccCceeEEEEecCCCEEEecCCC
Confidence 99999998111 1229999999998876
No 15
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.05 E-value=1.5e-07 Score=84.22 Aligned_cols=226 Identities=14% Similarity=0.166 Sum_probs=141.2
Q ss_pred hccccceeeeccccceEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcceeecc
Q 016020 105 AHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESES 184 (396)
Q Consensus 105 ~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF~~~~ 184 (396)
...|....||..+++.+..+-... + ++.+-+....+.+.+ +. .++ ..++ ..+++ .+ ..+..-..
T Consensus 50 ~~~~~v~~~d~~~~~~~~~~~~~~-~-~~~~~~~~~g~~l~~-~~--~~~-~~l~--~~d~~---~~-----~~~~~~~~ 113 (300)
T TIGR03866 50 SDSDTIQVIDLATGEVIGTLPSGP-D-PELFALHPNGKILYI-AN--EDD-NLVT--VIDIE---TR-----KVLAEIPV 113 (300)
T ss_pred CCCCeEEEEECCCCcEEEeccCCC-C-ccEEEECCCCCEEEE-Ec--CCC-CeEE--EEECC---CC-----eEEeEeeC
Confidence 356778889988888877664322 2 244555555554433 21 222 2233 22221 11 11111111
Q ss_pred cCCCCeEEeeCCCCcEEEeecCC-CeEEEEeccCceEEEEec-cCceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcE
Q 016020 185 LKWPGFVEFDDVNGKVLTYSAQD-SIYKVFDLKNYTMLYSIS-DKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTV 262 (396)
Q Consensus 185 l~~PgfVEFDd~NgkIlt~~a~d-~~YrVwdlknYs~lysIs-~~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~ 262 (396)
-..|.-+.|++ +|+.++..+.+ ....+||+++.+.+..+. +.....+.++|+-..++.... ..-.+.+||+++|+.
T Consensus 114 ~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~-~~~~v~i~d~~~~~~ 191 (300)
T TIGR03866 114 GVEPEGMAVSP-DGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSE-IGGTVSVIDVATRKV 191 (300)
T ss_pred CCCcceEEECC-CCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcC-CCCEEEEEEcCccee
Confidence 12366788988 77777666665 467889999998776553 356677889866554433221 234689999999998
Q ss_pred EEEEEeeccc-------CCccchhhhhcceeeEe-ecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEE-EE-
Q 016020 263 LKVFYHLLHR-------NKKVDFIEQFNEKLLVK-QENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLT-FR- 332 (396)
Q Consensus 263 l~s~~~~L~~-------sk~i~FiE~~~ekLLIK-Qed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLT-fs- 332 (396)
+..+.+..+. ...+.|.+ .+..+++. ..+..+.+||+.+++...... +...|...-|.++++..++ -.
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~i~~s~-dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~ 269 (300)
T TIGR03866 192 IKKITFEIPGVHPEAVQPVGIKLTK-DGKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGV 269 (300)
T ss_pred eeeeeecccccccccCCccceEECC-CCCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCC
Confidence 8876632211 01255554 77777765 456679999999998876432 3346888889999887554 34
Q ss_pred cCeEEEEeccc-ceeeeec
Q 016020 333 NRTVAVWNFRG-ELVTSFE 350 (396)
Q Consensus 333 ~gti~iWd~~g-eL~t~fe 350 (396)
+|+|.+||+++ ++++.++
T Consensus 270 ~~~i~v~d~~~~~~~~~~~ 288 (300)
T TIGR03866 270 SNDVSVIDVAALKVIKSIK 288 (300)
T ss_pred CCeEEEEECCCCcEEEEEE
Confidence 59999999999 6778775
No 16
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.02 E-value=1.1e-09 Score=110.80 Aligned_cols=149 Identities=13% Similarity=0.291 Sum_probs=123.2
Q ss_pred CCCeE---EeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCC--------------
Q 016020 187 WPGFV---EFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSS-------------- 247 (396)
Q Consensus 187 ~PgfV---EFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~-------------- 247 (396)
|-|-| .||+ |++.+.+.|+++||||..|.++|..+=+ |+|.-++++.|+|+-- ...+
T Consensus 236 HtGSVLCLqyd~---rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~ng~mvtc-SkDrsiaVWdm~sps~it 311 (499)
T KOG0281|consen 236 HTGSVLCLQYDE---RVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSNGYMVTC-SKDRSIAVWDMASPTDIT 311 (499)
T ss_pred CCCcEEeeeccc---eEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeCCEEEEe-cCCceeEEEeccCchHHH
Confidence 44544 6776 6999999999999999999999999877 9999999999999732 2221
Q ss_pred --------------------------CeeeeEEEEeecCcEEEEEEeecccCCccchhhhhcceeeEeecCCeeeEEEcc
Q 016020 248 --------------------------SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVR 301 (396)
Q Consensus 248 --------------------------~~iplkIl~IetG~~l~s~~~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~ 301 (396)
++-.+|+|++.||+.+..++ +|..-|.-++--+..++.+.-|..|++||+.
T Consensus 312 ~rrVLvGHrAaVNvVdfd~kyIVsASgDRTikvW~~st~efvRtl~---gHkRGIAClQYr~rlvVSGSSDntIRlwdi~ 388 (499)
T KOG0281|consen 312 LRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLN---GHKRGIACLQYRDRLVVSGSSDNTIRLWDIE 388 (499)
T ss_pred HHHHHhhhhhheeeeccccceEEEecCCceEEEEeccceeeehhhh---cccccceehhccCeEEEecCCCceEEEEecc
Confidence 34689999999999999888 8878888777556666778999999999999
Q ss_pred cceEEEecccccCCCceEEEeecCeEEEEEE-cCeEEEEecccc
Q 016020 302 NAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGE 344 (396)
Q Consensus 302 ~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs-~gti~iWd~~ge 344 (396)
.|++++|+.+|-...++..|-. +-.++=- +|+|+|||++..
T Consensus 389 ~G~cLRvLeGHEeLvRciRFd~--krIVSGaYDGkikvWdl~aa 430 (499)
T KOG0281|consen 389 CGACLRVLEGHEELVRCIRFDN--KRIVSGAYDGKIKVWDLQAA 430 (499)
T ss_pred ccHHHHHHhchHHhhhheeecC--ceeeeccccceEEEEecccc
Confidence 9999999999999999999954 3344443 499999998763
No 17
>PTZ00421 coronin; Provisional
Probab=99.01 E-value=1e-07 Score=99.14 Aligned_cols=208 Identities=13% Similarity=0.173 Sum_probs=130.1
Q ss_pred CCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCC--CCCCccee-ecccCCCCeEEeeCCCCcEEEe
Q 016020 127 SPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKP--DSGFALFE-SESLKWPGFVEFDDVNGKVLTY 203 (396)
Q Consensus 127 s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~--~~~~~LF~-~~~l~~PgfVEFDd~NgkIlt~ 203 (396)
.+..-|.++=++..++.++. .++++ ..++.--++ .+.+ ....++.. ..--..-..+.|.+..+.+|+.
T Consensus 73 GH~~~V~~v~fsP~d~~~La---SgS~D-gtIkIWdi~-----~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaS 143 (493)
T PTZ00421 73 GQEGPIIDVAFNPFDPQKLF---TASED-GTIMGWGIP-----EEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLAS 143 (493)
T ss_pred CCCCCEEEEEEcCCCCCEEE---EEeCC-CEEEEEecC-----CCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEE
Confidence 45667888888874444433 12334 234433332 2211 01122221 1112234568899866779999
Q ss_pred ecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCC---ccch
Q 016020 204 SAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNK---KVDF 278 (396)
Q Consensus 204 ~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk---~i~F 278 (396)
.+.|+.++|||+++.+.+..+.. ..|..+.|+|+--+++.... +..++|||+.+|+.+.++.. |... .+.|
T Consensus 144 gs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~--Dg~IrIwD~rsg~~v~tl~~--H~~~~~~~~~w 219 (493)
T PTZ00421 144 AGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSK--DKKLNIIDPRDGTIVSSVEA--HASAKSQRCLW 219 (493)
T ss_pred EeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecC--CCEEEEEECCCCcEEEEEec--CCCCcceEEEE
Confidence 99999999999999999999875 67999999987666666665 67799999999999887761 2222 3556
Q ss_pred hhhhcceeeE----eecCCeeeEEEcccce-EEEecccccCC-CceEEEeecCeEEEEE-E-cCeEEEEeccc-ceeee
Q 016020 279 IEQFNEKLLV----KQENENLQILDVRNAE-LMEVSRTEFMT-PSAFIFLYENQLFLTF-R-NRTVAVWNFRG-ELVTS 348 (396)
Q Consensus 279 iE~~~ekLLI----KQed~~L~I~Dv~~~k-i~~v~~t~~~~-PsAFiFly~~qLFLTf-s-~gti~iWd~~g-eL~t~ 348 (396)
.. .+..|+. +..|..+++||+++.+ .+.+...+... ...-.|.++++++++- + +|+|.+||++. +++..
T Consensus 220 ~~-~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~ 297 (493)
T PTZ00421 220 AK-RKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFC 297 (493)
T ss_pred cC-CCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEE
Confidence 65 3455553 3457889999999754 33222111111 2222355566665544 3 69999999997 44443
No 18
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.00 E-value=2.6e-09 Score=108.78 Aligned_cols=170 Identities=16% Similarity=0.254 Sum_probs=140.8
Q ss_pred eEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEE-E
Q 016020 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKV-F 266 (396)
Q Consensus 190 fVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s-~ 266 (396)
-+-|.+ .|+.|+..+-|.+.|+||+.+-..++...+ .=|++|.|||+--.+.+... ...+.|||-.+|+.+.. |
T Consensus 120 ~~~fsp-~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~--dg~I~lwdpktg~~~g~~l 196 (480)
T KOG0271|consen 120 SVQFSP-TGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSK--DGSIRLWDPKTGQQIGRAL 196 (480)
T ss_pred EEEecC-CCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhcccc--CCeEEEecCCCCCcccccc
Confidence 367999 999999999999999999999999999998 77999999998887777776 67789999999999885 4
Q ss_pred EeecccCCc---cchhh----hhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEcCeEEEE
Q 016020 267 YHLLHRNKK---VDFIE----QFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVW 339 (396)
Q Consensus 267 ~~~L~~sk~---i~FiE----~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~gti~iW 339 (396)
. .|+|- +.|-+ .-..+|.....|++++|||+.-++++..+-+|.++..+.-.=-++=+|=...|+||++|
T Consensus 197 ~---gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw 273 (480)
T KOG0271|consen 197 R---GHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVW 273 (480)
T ss_pred c---CcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEEecCCCceEEEE
Confidence 4 44443 11111 12348889999999999999999999999999999999988777777777788999999
Q ss_pred ecc-cceeeeeccccccCCC--CCCCcEE
Q 016020 340 NFR-GELVTSFEDHLLWHPD--CNTNNIY 365 (396)
Q Consensus 340 d~~-geL~t~fedh~l~~~~--c~~n~~~ 365 (396)
+.. |-+...|-+|.-|.-. |+|+-+.
T Consensus 274 ~a~dG~~~r~lkGHahwvN~lalsTdy~L 302 (480)
T KOG0271|consen 274 RALDGKLCRELKGHAHWVNHLALSTDYVL 302 (480)
T ss_pred EccchhHHHhhcccchheeeeeccchhhh
Confidence 875 4799999999999544 7655443
No 19
>PLN00181 protein SPA1-RELATED; Provisional
Probab=98.99 E-value=6e-08 Score=104.11 Aligned_cols=233 Identities=15% Similarity=0.178 Sum_probs=155.4
Q ss_pred cccceEEEeec---cchhhhhhccccceeeeccccceEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEee
Q 016020 87 KRTKVIEIVAA---RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRST 163 (396)
Q Consensus 87 ~RS~V~EIv~a---~dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~ 163 (396)
..++|..+... ..+|+.-...|....||..+++.+..+.... .-|.++-++..+.+++.. ...|. .++.-.
T Consensus 531 ~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~-~~V~~l~~~p~~~~~L~S--gs~Dg--~v~iWd- 604 (793)
T PLN00181 531 SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHE-KRVWSIDYSSADPTLLAS--GSDDG--SVKLWS- 604 (793)
T ss_pred ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCC-CCEEEEEEcCCCCCEEEE--EcCCC--EEEEEE-
Confidence 34566665543 3567777788999999999999888887544 456677777545554431 12232 222222
Q ss_pred ehhhhhhCCCCCCCcceeecccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCce-EEEEecc--CceEEEEEcCCeEE
Q 016020 164 KIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT-MLYSISD--KHVQEIKISPGIML 240 (396)
Q Consensus 164 ~~~~i~~gk~~~~~~LF~~~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs-~lysIs~--~~VqEIkiSpg~~L 240 (396)
++.|+ .+.+-..-...-.+.|.+.+|..++..+.|+.+++||+++.+ .+..+.+ ..|..++++++..|
T Consensus 605 ----~~~~~-----~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~~~l 675 (793)
T PLN00181 605 ----INQGV-----SIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTL 675 (793)
T ss_pred ----CCCCc-----EEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeCCCEE
Confidence 22222 121111111233567766689999999999999999999877 4667765 68999999988765
Q ss_pred EEEecCCCeeeeEEEEeecC------cEEEEEEeecccCCc---cchhhhhcceeeEeecCCeeeEEEcccceEEEe---
Q 016020 241 LIFNRSSSHVPLKILSIEDG------TVLKVFYHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNAELMEV--- 308 (396)
Q Consensus 241 l~~q~~~~~iplkIl~IetG------~~l~s~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v--- 308 (396)
+.. .. +-.++|||+.++ +.+.++. .|... +.|.+ .+.+|+...+|+.+.|||..+...+..
T Consensus 676 vs~-s~--D~~ikiWd~~~~~~~~~~~~l~~~~---gh~~~i~~v~~s~-~~~~lasgs~D~~v~iw~~~~~~~~~s~~~ 748 (793)
T PLN00181 676 VSS-ST--DNTLKLWDLSMSISGINETPLHSFM---GHTNVKNFVGLSV-SDGYIATGSETNEVFVYHKAFPMPVLSYKF 748 (793)
T ss_pred EEE-EC--CCEEEEEeCCCCccccCCcceEEEc---CCCCCeeEEEEcC-CCCEEEEEeCCCEEEEEECCCCCceEEEec
Confidence 443 33 456999999854 4555554 55544 55655 578999999999999999876532210
Q ss_pred ----------cccccCCCceEEEeecCeEEEEEEc-CeEEEEec
Q 016020 309 ----------SRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNF 341 (396)
Q Consensus 309 ----------~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~ 341 (396)
...+....++.-|.++++.+++-+. |+|+|||.
T Consensus 749 ~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 749 KTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred ccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 1122334577778899988888777 99999985
No 20
>PTZ00420 coronin; Provisional
Probab=98.98 E-value=1.8e-07 Score=99.27 Aligned_cols=223 Identities=13% Similarity=0.128 Sum_probs=136.7
Q ss_pred ccceeeeccccceEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcc--eeeccc
Q 016020 108 GVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFAL--FESESL 185 (396)
Q Consensus 108 G~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~L--F~~~~l 185 (396)
|+...++..+...++.+.. +..-|.++=++..++.++. | ++++ ..++.--++-.......+ ..|+ +.. --
T Consensus 54 gvI~L~~~~r~~~v~~L~g-H~~~V~~lafsP~~~~lLA-S--gS~D-gtIrIWDi~t~~~~~~~i--~~p~~~L~g-H~ 125 (568)
T PTZ00420 54 GAIRLENQMRKPPVIKLKG-HTSSILDLQFNPCFSEILA-S--GSED-LTIRVWEIPHNDESVKEI--KDPQCILKG-HK 125 (568)
T ss_pred eEEEeeecCCCceEEEEcC-CCCCEEEEEEcCCCCCEEE-E--EeCC-CeEEEEECCCCCcccccc--ccceEEeec-CC
Confidence 3445566666666676754 4456677777766544443 1 2233 233333222110000000 0111 110 11
Q ss_pred CCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc-CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEE
Q 016020 186 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLK 264 (396)
Q Consensus 186 ~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~-~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~ 264 (396)
..-..+.|.+....+++..+.|++++|||+++.+.++++.. ..|..+.|+|+-.+|+.... .-.++|||+.+|+.+.
T Consensus 126 ~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~--D~~IrIwD~Rsg~~i~ 203 (568)
T PTZ00420 126 KKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCV--GKHMHIIDPRKQEIAS 203 (568)
T ss_pred CcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEec--CCEEEEEECCCCcEEE
Confidence 22346788885556777788899999999999999888865 67999999976555555443 4568999999999998
Q ss_pred EEEeecccCCc----cchhh---hhcceeeEeecCC----eeeEEEccc-ceEEEecccccCCCceEEEee---cCeEEE
Q 016020 265 VFYHLLHRNKK----VDFIE---QFNEKLLVKQENE----NLQILDVRN-AELMEVSRTEFMTPSAFIFLY---ENQLFL 329 (396)
Q Consensus 265 s~~~~L~~sk~----i~FiE---~~~ekLLIKQed~----~L~I~Dv~~-~ki~~v~~t~~~~PsAFiFly---~~qLFL 329 (396)
++. .|... .-++. ..+++|+.-..+. .++|||+++ ++.+.+. +....+...+..| ++.+|+
T Consensus 204 tl~---gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~-~ld~~~~~L~p~~D~~tg~l~l 279 (568)
T PTZ00420 204 SFH---IHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTM-SIDNASAPLIPHYDESTGLIYL 279 (568)
T ss_pred EEe---cccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEE-EecCCccceEEeeeCCCCCEEE
Confidence 776 33322 11221 2567888866553 699999996 5544432 3444455444443 588899
Q ss_pred EEEc-CeEEEEecccc
Q 016020 330 TFRN-RTVAVWNFRGE 344 (396)
Q Consensus 330 Tfs~-gti~iWd~~ge 344 (396)
+-+. ++|.+|++..+
T Consensus 280 sGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 280 IGKGDGNCRYYQHSLG 295 (568)
T ss_pred EEECCCeEEEEEccCC
Confidence 8866 89999999654
No 21
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=98.96 E-value=2e-09 Score=111.23 Aligned_cols=184 Identities=21% Similarity=0.283 Sum_probs=139.7
Q ss_pred cccCCCC------eEEeeCCCCcEEEeecCCCeEEEEeccC-ceEEEEecc--CceEEEEEcC-CeEEEEEecCCCeeee
Q 016020 183 ESLKWPG------FVEFDDVNGKVLTYSAQDSIYKVFDLKN-YTMLYSISD--KHVQEIKISP-GIMLLIFNRSSSHVPL 252 (396)
Q Consensus 183 ~~l~~Pg------fVEFDd~NgkIlt~~a~d~~YrVwdlkn-Ys~lysIs~--~~VqEIkiSp-g~~Ll~~q~~~~~ipl 252 (396)
-+..|+| ++.|-+..|..+.+...|+.++||++++ +.+|=...+ +.|.++++|+ |.-+|-... +..+
T Consensus 206 ~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sf---D~~l 282 (503)
T KOG0282|consen 206 LSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASF---DRFL 282 (503)
T ss_pred heeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeec---ceee
Confidence 3445565 5678899999999999999999999999 888766666 9999999994 555544333 5999
Q ss_pred EEEEeecCcEEEEEEeecccCCccchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEE
Q 016020 253 KILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR 332 (396)
Q Consensus 253 kIl~IetG~~l~s~~~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs 332 (396)
|+||.|||+++.+|... ..-.-+.|-+-...-.|++--|+.|+-||++++|++.-=..|--......|+++|..|+|-|
T Consensus 283 KlwDtETG~~~~~f~~~-~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissS 361 (503)
T KOG0282|consen 283 KLWDTETGQVLSRFHLD-KVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSS 361 (503)
T ss_pred eeeccccceEEEEEecC-CCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeec
Confidence 99999999999998832 11122666663336778888999999999999998876566667778899999999999999
Q ss_pred c-CeEEEEecccc----eeeeecccccc----CCC-------CCCCcEEEccCC
Q 016020 333 N-RTVAVWNFRGE----LVTSFEDHLLW----HPD-------CNTNNIYITSDQ 370 (396)
Q Consensus 333 ~-gti~iWd~~ge----L~t~fedh~l~----~~~-------c~~n~~~it~~q 370 (396)
+ .++.||+.+=. +...-+.|--. ||| |.+|-++|=+..
T Consensus 362 Ddks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~ 415 (503)
T KOG0282|consen 362 DDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTV 415 (503)
T ss_pred cCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecc
Confidence 9 89999999874 33444555333 333 555665554443
No 22
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=98.92 E-value=1.3e-08 Score=101.04 Aligned_cols=194 Identities=17% Similarity=0.187 Sum_probs=142.3
Q ss_pred CCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEc-CCeEEEEEecCCCeeeeEEEEeecCcEEEEE--Eeecc
Q 016020 197 NGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVF--YHLLH 271 (396)
Q Consensus 197 NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiS-pg~~Ll~~q~~~~~iplkIl~IetG~~l~s~--~~~L~ 271 (396)
+|..+.+++.|.++++||+++.+++|.... .-|-.+..+ =|..|+.+.+. +..+||||+-+.+..+.+ ++-|+
T Consensus 101 d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~Sgsd--D~t~kl~D~R~k~~~~t~~~kyqlt 178 (338)
T KOG0265|consen 101 DGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSD--DGTLKLWDIRKKEAIKTFENKYQLT 178 (338)
T ss_pred CCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCC--CceEEEEeecccchhhccccceeEE
Confidence 678888899999999999999999998876 223333333 46677676666 889999999988887766 32222
Q ss_pred cCCccchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc-CeEEEEeccc----ce-
Q 016020 272 RNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNFRG----EL- 345 (396)
Q Consensus 272 ~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~~g----eL- 345 (396)
-+.|-. .++...++-.|.-||+||+++++.+.++.+|.++.-..--+++|...++-+= .++.+||++. ++
T Consensus 179 ---Av~f~d-~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~ 254 (338)
T KOG0265|consen 179 ---AVGFKD-TSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRC 254 (338)
T ss_pred ---EEEecc-cccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCce
Confidence 255555 8899999999999999999999999999999999998888899988888775 8999999986 33
Q ss_pred ee-------eeccccccCCCC--CCCcEEEccCCcEEEEeccCCCCCccccCCCcceeeC
Q 016020 346 VT-------SFEDHLLWHPDC--NTNNIYITSDQDLIISYCKAEPEDQWMEGSGNSFTCL 396 (396)
Q Consensus 346 ~t-------~fedh~l~~~~c--~~n~~~it~~qd~ii~~~~~~~~~~~~~~~~~~~~~~ 396 (396)
+. +||.++||..-. -+.+-++++|.-++|==-..-.----..|-.|||||+
T Consensus 255 v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~ 314 (338)
T KOG0265|consen 255 VKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEV 314 (338)
T ss_pred EEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEe
Confidence 32 678888875543 3445566677666552111111111124667788874
No 23
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.90 E-value=4.9e-08 Score=105.06 Aligned_cols=188 Identities=17% Similarity=0.272 Sum_probs=155.9
Q ss_pred CeEEeeCCCCcEEEeecCCCeEEEEeccC-------ceE----EEEeccCceEEEEEcCCeEEEEEecCCCeeeeEEEEe
Q 016020 189 GFVEFDDVNGKVLTYSAQDSIYKVFDLKN-------YTM----LYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSI 257 (396)
Q Consensus 189 gfVEFDd~NgkIlt~~a~d~~YrVwdlkn-------Ys~----lysIs~~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~I 257 (396)
|=|-++-.-.-.++.-++|.+.|+|+|.. +.+ .-..-|++|-.+.++|+=-|+...+- +...|||++
T Consensus 415 gava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~Sq--DktaKiW~l 492 (775)
T KOG0319|consen 415 GAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQ--DKTAKIWDL 492 (775)
T ss_pred ceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEeccc--ccceeeecc
Confidence 44556665556788889999999999998 554 33456799999999998888777766 799999999
Q ss_pred ecCcEEEEEEeecccCCc---cchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc-
Q 016020 258 EDGTVLKVFYHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN- 333 (396)
Q Consensus 258 etG~~l~s~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~- 333 (396)
++++.++.+. +|.+- |+|.+ ....|+.-+-|..++||.+-+..|+++..+|...+--..|..++.-+++--.
T Consensus 493 e~~~l~~vLs---GH~RGvw~V~Fs~-~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~ad 568 (775)
T KOG0319|consen 493 EQLRLLGVLS---GHTRGVWCVSFSK-NDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGAD 568 (775)
T ss_pred cCceEEEEee---CCccceEEEEecc-ccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCC
Confidence 9999999999 77776 89998 6788999999999999999999999999999988888889887776666654
Q ss_pred CeEEEEeccc-ceeeeecccc--ccCCC-CCCCcEEEccCCcEEEEeccCCCC
Q 016020 334 RTVAVWNFRG-ELVTSFEDHL--LWHPD-CNTNNIYITSDQDLIISYCKAEPE 382 (396)
Q Consensus 334 gti~iWd~~g-eL~t~fedh~--l~~~~-c~~n~~~it~~qd~ii~~~~~~~~ 382 (396)
|.+++||..- +=..+++.|. .|+.- .+....|+|++-|=-|-.-|...+
T Consensus 569 GliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~Te 621 (775)
T KOG0319|consen 569 GLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVTE 621 (775)
T ss_pred CcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEeecCcH
Confidence 9999999998 6777888886 78776 455567888988888777776543
No 24
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=98.90 E-value=3.4e-08 Score=100.19 Aligned_cols=195 Identities=14% Similarity=0.231 Sum_probs=160.4
Q ss_pred cccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecC
Q 016020 183 ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDG 260 (396)
Q Consensus 183 ~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG 260 (396)
.-|.|=--|.+|+. ..+.+.++.|.++++||+.+.++.-++.+ +.|-++++|+-+-.|+...- +.-+|-||+|+-
T Consensus 149 gHlgWVr~vavdP~-n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~ge--dk~VKCwDLe~n 225 (460)
T KOG0285|consen 149 GHLGWVRSVAVDPG-NEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGE--DKQVKCWDLEYN 225 (460)
T ss_pred hccceEEEEeeCCC-ceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecC--CCeeEEEechhh
Confidence 55667777899997 56888999999999999999999999997 99999999999888887766 555666666664
Q ss_pred cE------------------------------------------EEEEEeecccCCc---cchhhhhcceeeEeecCCee
Q 016020 261 TV------------------------------------------LKVFYHLLHRNKK---VDFIEQFNEKLLVKQENENL 295 (396)
Q Consensus 261 ~~------------------------------------------l~s~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L 295 (396)
+. +..+. +|.+. |.|-+ .+-.++..+-|..+
T Consensus 226 kvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~---GH~~~V~~V~~~~-~dpqvit~S~D~tv 301 (460)
T KOG0285|consen 226 KVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLS---GHTNPVASVMCQP-TDPQVITGSHDSTV 301 (460)
T ss_pred hhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEec---CCCCcceeEEeec-CCCceEEecCCceE
Confidence 33 22222 45555 55665 78889999999999
Q ss_pred eEEEcccceEEEecccccCCCceEEEeecCeEEEEEEcCeEEEEeccc-ceeeeecccccc--CCCCCCCcEEEccCCcE
Q 016020 296 QILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRG-ELVTSFEDHLLW--HPDCNTNNIYITSDQDL 372 (396)
Q Consensus 296 ~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~gti~iWd~~g-eL~t~fedh~l~--~~~c~~n~~~it~~qd~ 372 (396)
+.||++.++...++-.|.-+.+|..--|.-.+|.+.+-+.|+=|++-. +..+++++|.-- +..-|.+.++++....=
T Consensus 302 rlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~nlsgh~~iintl~~nsD~v~~~G~dng 381 (460)
T KOG0285|consen 302 RLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQNLSGHNAIINTLSVNSDGVLVSGGDNG 381 (460)
T ss_pred EEeeeccCceeEeeecccceeeEEecCCchhhhhccCCccceeccCCccchhhccccccceeeeeeeccCceEEEcCCce
Confidence 999999999999999999999999999999999999999999999976 899999999644 44478889999988888
Q ss_pred EEEeccCCCCCc
Q 016020 373 IISYCKAEPEDQ 384 (396)
Q Consensus 373 ii~~~~~~~~~~ 384 (396)
+|++..-.+.-.
T Consensus 382 ~~~fwdwksg~n 393 (460)
T KOG0285|consen 382 SIMFWDWKSGHN 393 (460)
T ss_pred EEEEEecCcCcc
Confidence 888765544433
No 25
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=98.89 E-value=4e-08 Score=103.45 Aligned_cols=173 Identities=17% Similarity=0.277 Sum_probs=135.9
Q ss_pred EEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEe
Q 016020 191 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYH 268 (396)
Q Consensus 191 VEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~ 268 (396)
++|+. =+..+-..+-|.+.||||+.++.+..++-+ .-|+.+.+-+...+. ... +=.+++|+|++|+.+..+.
T Consensus 255 l~~~~-~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~~~~~s--gs~--D~tVkVW~v~n~~~l~l~~- 328 (537)
T KOG0274|consen 255 LAFPS-GGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDPFLLVS--GSR--DNTVKVWDVTNGACLNLLR- 328 (537)
T ss_pred EEEec-CCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccCceEee--ccC--CceEEEEeccCcceEEEec-
Confidence 45554 355666677799999999999999999996 889999888877753 222 4578999999999999888
Q ss_pred ecccCCccchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEcCeEEEEecccc--ee
Q 016020 269 LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGE--LV 346 (396)
Q Consensus 269 ~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~gti~iWd~~ge--L~ 346 (396)
+|+..|.=+-..+..|+..+.|..+++||++++++.+++.+|...+.+++|-.++.++-..=+++|++||+... .+
T Consensus 329 --~h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~ 406 (537)
T KOG0274|consen 329 --GHTGPVNCVQLDEPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSENRLLSGSLDTTIKVWDLRTKRKCI 406 (537)
T ss_pred --cccccEEEEEecCCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCcceEEeeeeccceEeecCCchhhhh
Confidence 57777665666689999999999999999999999999999999999997776655555555699999999995 77
Q ss_pred eeeccccccCCC-CCCCcEEEccCCc
Q 016020 347 TSFEDHLLWHPD-CNTNNIYITSDQD 371 (396)
Q Consensus 347 t~fedh~l~~~~-c~~n~~~it~~qd 371 (396)
-.+..|...+.. =..+++++++.-|
T Consensus 407 ~tl~~h~~~v~~l~~~~~~Lvs~~aD 432 (537)
T KOG0274|consen 407 HTLQGHTSLVSSLLLRDNFLVSSSAD 432 (537)
T ss_pred hhhcCCcccccccccccceeEecccc
Confidence 778888777632 2233444444333
No 26
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=98.82 E-value=1.8e-07 Score=92.30 Aligned_cols=182 Identities=19% Similarity=0.229 Sum_probs=146.9
Q ss_pred eEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEE
Q 016020 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFY 267 (396)
Q Consensus 190 fVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~ 267 (396)
+|.|.- +|-.|-+++-|+...||=--|++.|=...+ -.||++.+.-.+-.|+...+ +..++|||+++|+.++.++
T Consensus 15 qiKyN~-eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSA--D~t~kLWDv~tGk~la~~k 91 (327)
T KOG0643|consen 15 QIKYNR-EGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSA--DQTAKLWDVETGKQLATWK 91 (327)
T ss_pred eEEecC-CCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccc--cceeEEEEcCCCcEEEEee
Confidence 567766 788888899999999999999999888877 78999999999999999999 8899999999999998544
Q ss_pred e---------------------------------ecccC------Cc-------------cchhhhhcceeeEeecCCee
Q 016020 268 H---------------------------------LLHRN------KK-------------VDFIEQFNEKLLVKQENENL 295 (396)
Q Consensus 268 ~---------------------------------~L~~s------k~-------------i~FiE~~~ekLLIKQed~~L 295 (396)
. .+... ++ ..-.-..+|+|+.+-|+++|
T Consensus 92 ~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~i 171 (327)
T KOG0643|consen 92 TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSI 171 (327)
T ss_pred cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcE
Confidence 1 11100 00 11112367889999999999
Q ss_pred eEEEcccc-eEEEecccccCCCceEEEeecCeEEEEEEc-CeEEEEeccc-ceeeeeccccccCCCCCCCcEEEccCCcE
Q 016020 296 QILDVRNA-ELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNFRG-ELVTSFEDHLLWHPDCNTNNIYITSDQDL 372 (396)
Q Consensus 296 ~I~Dv~~~-ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~~g-eL~t~fedh~l~~~~c~~n~~~it~~qd~ 372 (396)
.+||++++ ++++..+.|.-...-.-|+++...|+|-|. .+-++||++. +..-+ +.-+||-|..-||..+|-
T Consensus 172 s~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kt------y~te~PvN~aaisP~~d~ 245 (327)
T KOG0643|consen 172 SIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKT------YTTERPVNTAAISPLLDH 245 (327)
T ss_pred EEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEE------eeecccccceecccccce
Confidence 99999997 566677888888888999999999999998 7999999988 53333 456699999999999999
Q ss_pred EEEeccCC
Q 016020 373 IISYCKAE 380 (396)
Q Consensus 373 ii~~~~~~ 380 (396)
+|..=-.+
T Consensus 246 VilgGGqe 253 (327)
T KOG0643|consen 246 VILGGGQE 253 (327)
T ss_pred EEecCCce
Confidence 99864433
No 27
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=98.80 E-value=3.1e-08 Score=106.58 Aligned_cols=147 Identities=14% Similarity=0.260 Sum_probs=130.5
Q ss_pred eEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEE
Q 016020 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFY 267 (396)
Q Consensus 190 fVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~ 267 (396)
+|.|.+ .|==-|..++|.+=|+|.--.+..+=.+=+ -+|-++++-|+...+...+. +-.+.+||+.+|....-|.
T Consensus 498 dV~F~P-~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSs--D~tVRlWDv~~G~~VRiF~ 574 (707)
T KOG0263|consen 498 DVQFAP-RGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSS--DRTVRLWDVSTGNSVRIFT 574 (707)
T ss_pred eEEecC-CceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCC--CceEEEEEcCCCcEEEEec
Confidence 588997 677777779999999999887774433333 78899999999999888855 8999999999999988887
Q ss_pred eecccCCc---cchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc-CeEEEEeccc
Q 016020 268 HLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNFRG 343 (396)
Q Consensus 268 ~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~~g 343 (396)
+|..+ +.|.+ .|-||..+.|++.|.|||+.+++++....+|..+....-|+++|..+++-+- ++|.+||+.=
T Consensus 575 ---GH~~~V~al~~Sp-~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 575 ---GHKGPVTALAFSP-CGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred ---CCCCceEEEEEcC-CCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 78777 89999 9999999999999999999999999999999999999999999999998887 7999999865
No 28
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=2.4e-07 Score=92.01 Aligned_cols=175 Identities=16% Similarity=0.231 Sum_probs=141.4
Q ss_pred CCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEeccC--ceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEE
Q 016020 187 WPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--HVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLK 264 (396)
Q Consensus 187 ~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~~--~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~ 264 (396)
.+--+||++ +|.-+..+++|...+++|+.+.+++.+|..+ .++-+++.-..+-+++.+++.+-.++.|+++|-+-+.
T Consensus 16 ~i~sl~fs~-~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylR 94 (311)
T KOG1446|consen 16 KINSLDFSD-DGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLR 94 (311)
T ss_pred ceeEEEecC-CCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEE
Confidence 456799999 8888888999999999999999999999997 9999999999999999999999999999999999998
Q ss_pred EEEeecccCCccchhh--hhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEcC-eEEEEec
Q 016020 265 VFYHLLHRNKKVDFIE--QFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNR-TVAVWNF 341 (396)
Q Consensus 265 s~~~~L~~sk~i~FiE--~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~g-ti~iWd~ 341 (396)
-|. +|.+.|..|+ .-++.-|....|+.++.||++..+++-..+-..-+. --|-|+|=+|.+...+ .|++||+
T Consensus 95 YF~---GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi--~AfDp~GLifA~~~~~~~IkLyD~ 169 (311)
T KOG1446|consen 95 YFP---GHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPI--AAFDPEGLIFALANGSELIKLYDL 169 (311)
T ss_pred EcC---CCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcc--eeECCCCcEEEEecCCCeEEEEEe
Confidence 888 8888866654 256999999999999999999999887655443333 3345565555555554 8999999
Q ss_pred cc-c--eee----eeccccccCCC--CCCCcEEEc
Q 016020 342 RG-E--LVT----SFEDHLLWHPD--CNTNNIYIT 367 (396)
Q Consensus 342 ~g-e--L~t----~fedh~l~~~~--c~~n~~~it 367 (396)
+. + .-+ ..+++.=|..- .|+++..+=
T Consensus 170 Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLl 204 (311)
T KOG1446|consen 170 RSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILL 204 (311)
T ss_pred cccCCCCceeEccCCCCccceeeeEEcCCCCEEEE
Confidence 97 2 222 34677777554 788876543
No 29
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=98.79 E-value=2.7e-07 Score=91.12 Aligned_cols=232 Identities=17% Similarity=0.247 Sum_probs=170.4
Q ss_pred eEEEeeccchhhhhhc--cccceeeeccccceEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhh
Q 016020 91 VIEIVAARDIVFALAH--SGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYI 168 (396)
Q Consensus 91 V~EIv~a~dii~~L~~--sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i 168 (396)
|...+...|==++|+- -|.-+.+|..+|+-.+-+ .++-..|-|+=+|.+|..+++-|.- -+|+--.+--+
T Consensus 66 v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f-~GH~~dVlsva~s~dn~qivSGSrD-----kTiklwnt~g~-- 137 (315)
T KOG0279|consen 66 VSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRF-VGHTKDVLSVAFSTDNRQIVSGSRD-----KTIKLWNTLGV-- 137 (315)
T ss_pred ecceEEccCCceEEeccccceEEEEEecCCcEEEEE-EecCCceEEEEecCCCceeecCCCc-----ceeeeeeeccc--
Confidence 3344444444455544 488999999999888855 3555667789999999999885532 23333222100
Q ss_pred hhCCCCCCCcceeecc-cCCCCeEEeeCCC-CcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEe
Q 016020 169 RRGKPDSGFALFESES-LKWPGFVEFDDVN-GKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFN 244 (396)
Q Consensus 169 ~~gk~~~~~~LF~~~~-l~~PgfVEFDd~N-gkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q 244 (396)
...=...++ -.|=-=|-|.|.+ .-++++.+.|++.|||||.|.+..=..-+ .-+.-+.+||+=.|.++.
T Consensus 138 -------ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasG 210 (315)
T KOG0279|consen 138 -------CKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASG 210 (315)
T ss_pred -------EEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecC
Confidence 000111222 4566778999954 78889899999999999999997777666 678899999988888987
Q ss_pred cCCCeeeeEEEEeecCcEEEEEEeecccCCccchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCC-------c
Q 016020 245 RSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTP-------S 317 (396)
Q Consensus 245 ~~~~~iplkIl~IetG~~l~s~~~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~P-------s 317 (396)
+. ...+.+||+-.|+.++++.+...- ..+.|.| |.|-|-..-+.+++|||+-++++++.++..+-.| .
T Consensus 211 gk--dg~~~LwdL~~~k~lysl~a~~~v-~sl~fsp--nrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~ 285 (315)
T KOG0279|consen 211 GK--DGEAMLWDLNEGKNLYSLEAFDIV-NSLCFSP--NRYWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPI 285 (315)
T ss_pred CC--CceEEEEEccCCceeEeccCCCeE-eeEEecC--CceeEeeccCCceEEEeccchhhhhhccccccccccccCCcE
Confidence 77 788999999999999998754222 4588998 8999999999999999999999999777776666 2
Q ss_pred e--EEEee-cCeEEEEEEcCeEEEEecc
Q 016020 318 A--FIFLY-ENQLFLTFRNRTVAVWNFR 342 (396)
Q Consensus 318 A--FiFly-~~qLFLTfs~gti~iWd~~ 342 (396)
+ .-|+. ...||--..++.|++|.+.
T Consensus 286 clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 286 CLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred EEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 1 22343 5567888888999999764
No 30
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=98.78 E-value=7.3e-09 Score=104.85 Aligned_cols=180 Identities=15% Similarity=0.262 Sum_probs=137.0
Q ss_pred CeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEE
Q 016020 189 GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVF 266 (396)
Q Consensus 189 gfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~ 266 (396)
=-+.+|| +||+ +..-|.+++|||-++++++|.+++ --|.+.....- ++++.+. +-.+.|||++||++++.+
T Consensus 201 YClQYDD--~kiV-SGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~r--viisGSS--DsTvrvWDv~tge~l~tl 273 (499)
T KOG0281|consen 201 YCLQYDD--EKIV-SGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDER--VIVSGSS--DSTVRVWDVNTGEPLNTL 273 (499)
T ss_pred EEEEecc--hhhh-cccccCceEEeccccHHHHHhhhcCCCcEEeeeccce--EEEecCC--CceEEEEeccCCchhhHH
Confidence 3477888 6655 577899999999999999999999 67888888877 4466655 677899999999999987
Q ss_pred EeecccCCccchhhhhcceeeEeecCCeeeEEEcccc---eEEEecccccCCCceEEEeecCeEEEEEEc-CeEEEEecc
Q 016020 267 YHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNA---ELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNFR 342 (396)
Q Consensus 267 ~~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~---ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~~ 342 (396)
. ||..-|==+-.-|.+++.-..|.++.+||+.+- .+++|+.+|-..+-..= ++..+.+|.|. +||++|+..
T Consensus 274 i---hHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVd--fd~kyIVsASgDRTikvW~~s 348 (499)
T KOG0281|consen 274 I---HHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVD--FDDKYIVSASGDRTIKVWSTS 348 (499)
T ss_pred h---hhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeec--cccceEEEecCCceEEEEecc
Confidence 6 665553333334588888999999999999873 35568888854443333 45669999988 999999998
Q ss_pred c-ceeeeecccccc-CCCCCCCcEEEccCCcEEEEeccCC
Q 016020 343 G-ELVTSFEDHLLW-HPDCNTNNIYITSDQDLIISYCKAE 380 (396)
Q Consensus 343 g-eL~t~fedh~l~-~~~c~~n~~~it~~qd~ii~~~~~~ 380 (396)
. +-+..+.+|--= +-.=+.+...+|..-|.-|---.++
T Consensus 349 t~efvRtl~gHkRGIAClQYr~rlvVSGSSDntIRlwdi~ 388 (499)
T KOG0281|consen 349 TCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIE 388 (499)
T ss_pred ceeeehhhhcccccceehhccCeEEEecCCCceEEEEecc
Confidence 8 899999998643 2224677888888777766544443
No 31
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=98.77 E-value=6.2e-07 Score=89.23 Aligned_cols=216 Identities=13% Similarity=0.233 Sum_probs=170.3
Q ss_pred CCCceeeeEeeehhhhhhCCCCCCCcceeecccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCc--e----EEEEecc
Q 016020 153 DNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNY--T----MLYSISD 226 (396)
Q Consensus 153 d~~s~L~cr~~~~~~i~~gk~~~~~~LF~~~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknY--s----~lysIs~ 226 (396)
|.|++.|-+++|.. -.|-=-.-|.| +|.-+|...-|+.-.|+++++= + .--++.+
T Consensus 83 Ds~TtnK~haipl~------------------s~WVMtCA~sP-Sg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~g 143 (343)
T KOG0286|consen 83 DSFTTNKVHAIPLP------------------SSWVMTCAYSP-SGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAG 143 (343)
T ss_pred EcccccceeEEecC------------------ceeEEEEEECC-CCCeEEecCcCceeEEEecccccccccceeeeeecC
Confidence 45677777777532 22333456777 9999999999999999999855 2 2222333
Q ss_pred --CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCc---cchhhhhcceeeEeecCCeeeEEEcc
Q 016020 227 --KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVR 301 (396)
Q Consensus 227 --~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~ 301 (396)
--+.+.++-++.+++...+. +.-.+||||+|+.+..|. .|+.+ +++.|-.+.-.+.+.=|..-++||++
T Consensus 144 HtgylScC~f~dD~~ilT~SGD---~TCalWDie~g~~~~~f~---GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R 217 (343)
T KOG0286|consen 144 HTGYLSCCRFLDDNHILTGSGD---MTCALWDIETGQQTQVFH---GHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVR 217 (343)
T ss_pred ccceeEEEEEcCCCceEecCCC---ceEEEEEcccceEEEEec---CCcccEEEEecCCCCCCeEEecccccceeeeecc
Confidence 45778899999888776665 999999999999999999 88888 77777677778888999999999999
Q ss_pred cceEEEecccccCCCceEEEeecCeEEEEEEc-CeEEEEeccc-ceeeeeccccccCCCCCCCcEEEccCCcEEEEeccC
Q 016020 302 NAELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNFRG-ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKA 379 (396)
Q Consensus 302 ~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~~g-eL~t~fedh~l~~~~c~~n~~~it~~qd~ii~~~~~ 379 (396)
.+.+..+-.+|.....+.-|.|++.-|.|=|+ +++++||++. +-+.-|+ ..-.+|+-+.+=.|..--|+.+.++.
T Consensus 218 ~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys---~~~~~~gitSv~FS~SGRlLfagy~d 294 (343)
T KOG0286|consen 218 SGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYS---HDSIICGITSVAFSKSGRLLFAGYDD 294 (343)
T ss_pred CcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeec---cCcccCCceeEEEcccccEEEeeecC
Confidence 99999999999999999999999999999999 8999999999 3455555 33445998999889999999987765
Q ss_pred CCCCccc----------cCCCcceeeC
Q 016020 380 EPEDQWM----------EGSGNSFTCL 396 (396)
Q Consensus 380 ~~~~~~~----------~~~~~~~~~~ 396 (396)
-.-.-|- +|-.+.|.||
T Consensus 295 ~~c~vWDtlk~e~vg~L~GHeNRvScl 321 (343)
T KOG0286|consen 295 FTCNVWDTLKGERVGVLAGHENRVSCL 321 (343)
T ss_pred CceeEeeccccceEEEeeccCCeeEEE
Confidence 5444442 3455566664
No 32
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=98.75 E-value=1.7e-07 Score=98.73 Aligned_cols=166 Identities=15% Similarity=0.167 Sum_probs=137.3
Q ss_pred CcEEEeecCCCeEEEEeccCceEEEE-ecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCC
Q 016020 198 GKVLTYSAQDSIYKVFDLKNYTMLYS-ISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNK 274 (396)
Q Consensus 198 gkIlt~~a~d~~YrVwdlknYs~lys-Is~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk 274 (396)
+.-+.+.+.++.+++||..+...+.. +.+ ..|+-+++..|--+|+..+. +-.+++||+.+|++..++. .|+.
T Consensus 218 ~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~--D~t~rvWd~~sg~C~~~l~---gh~s 292 (537)
T KOG0274|consen 218 DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGST--DKTERVWDCSTGECTHSLQ---GHTS 292 (537)
T ss_pred cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEec--CCcEEeEecCCCcEEEEec---CCCc
Confidence 44566788899999999999999999 888 99999999977777788888 8999999999999999998 6767
Q ss_pred ccchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEcCeEEEEeccc-ceeeeecccc
Q 016020 275 KVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRG-ELVTSFEDHL 353 (396)
Q Consensus 275 ~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~gti~iWd~~g-eL~t~fedh~ 353 (396)
-+.=+.-..-+++.+..|+.+++|||-++.++.+.++|.+++.+.... ++-+|-.-.+++|++||.+= +.++++.+|.
T Consensus 293 tv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~-~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~ 371 (537)
T KOG0274|consen 293 SVRCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD-EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHT 371 (537)
T ss_pred eEEEEEccCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec-CCEEEEEecCceEEEEEhhhceeeeeecCCc
Confidence 766666567777778999999999999999999999999999988777 44444444559999999986 7999999999
Q ss_pred ccCCC-CCCC-cEEEccC
Q 016020 354 LWHPD-CNTN-NIYITSD 369 (396)
Q Consensus 354 l~~~~-c~~n-~~~it~~ 369 (396)
.|+-- -.++ ++.++.-
T Consensus 372 ~~V~sl~~~~~~~~~Sgs 389 (537)
T KOG0274|consen 372 GRVYSLIVDSENRLLSGS 389 (537)
T ss_pred ceEEEEEecCcceEEeee
Confidence 99654 3333 4444443
No 33
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=98.74 E-value=1.7e-08 Score=101.60 Aligned_cols=184 Identities=22% Similarity=0.351 Sum_probs=146.2
Q ss_pred cCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceE----EEE------eccCceEEEEEcCCeEEEEEecCCCeeeeEE
Q 016020 185 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM----LYS------ISDKHVQEIKISPGIMLLIFNRSSSHVPLKI 254 (396)
Q Consensus 185 l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~----lys------Is~~~VqEIkiSpg~~Ll~~q~~~~~iplkI 254 (396)
-.||.---|.+ .|.-|+.++.|+-+-|||+.+++. -|. .-|+.|.+|-+|-++-.|....- +..+|+
T Consensus 213 KSh~EcA~FSP-DgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsq--DGkIKv 289 (508)
T KOG0275|consen 213 KSHVECARFSP-DGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQ--DGKIKV 289 (508)
T ss_pred ccchhheeeCC-CCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCc--CCcEEE
Confidence 35777778998 899999999999999999999883 333 33588999999977665565555 789999
Q ss_pred EEeecCcEEEEEEeecccCCc---cchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEE
Q 016020 255 LSIEDGTVLKVFYHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTF 331 (396)
Q Consensus 255 l~IetG~~l~s~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTf 331 (396)
|-|+||.++..|. -+|++- +.|.. +|+.||....|+.++|.-+.+||+.+--++|.--.-..+|..|+.-.++.
T Consensus 290 Wri~tG~ClRrFd--rAHtkGvt~l~FSr-D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisa 366 (508)
T KOG0275|consen 290 WRIETGQCLRRFD--RAHTKGVTCLSFSR-DNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISA 366 (508)
T ss_pred EEEecchHHHHhh--hhhccCeeEEEEcc-CcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEe
Confidence 9999999999887 266666 78888 99999999999999999999999999999998888888999999999998
Q ss_pred Ec-CeEEEEeccc-ceeeeec----c------cccc-CCC----CC-CCcEEEccCCcEEE
Q 016020 332 RN-RTVAVWNFRG-ELVTSFE----D------HLLW-HPD----CN-TNNIYITSDQDLII 374 (396)
Q Consensus 332 s~-gti~iWd~~g-eL~t~fe----d------h~l~-~~~----c~-~n~~~it~~qd~ii 374 (396)
|+ |+|++|+... |-+.+|- | ++++ .|. || .|++||-.-|--++
T Consensus 367 SsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvV 427 (508)
T KOG0275|consen 367 SSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVV 427 (508)
T ss_pred cCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEE
Confidence 88 9999999876 4333331 1 1111 111 55 46777776665554
No 34
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.69 E-value=1.1e-07 Score=98.60 Aligned_cols=157 Identities=19% Similarity=0.254 Sum_probs=125.5
Q ss_pred EEeeCCCCcEEEeecCCCeEEEEeccCce--EEEEeccCceEEEEEcCCeE-EEEEecCCCeeeeEEEEeecCcEEEEEE
Q 016020 191 VEFDDVNGKVLTYSAQDSIYKVFDLKNYT--MLYSISDKHVQEIKISPGIM-LLIFNRSSSHVPLKILSIEDGTVLKVFY 267 (396)
Q Consensus 191 VEFDd~NgkIlt~~a~d~~YrVwdlknYs--~lysIs~~~VqEIkiSpg~~-Ll~~q~~~~~iplkIl~IetG~~l~s~~ 267 (396)
+.|.. -||.+|+.-..|.++|||+++=. ..|.=+---|..++++|--. ++.+... ..-.++||+.++.+...+.
T Consensus 74 ~~fR~-DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sD--d~v~k~~d~s~a~v~~~l~ 150 (487)
T KOG0310|consen 74 VDFRS-DGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSD--DKVVKYWDLSTAYVQAELS 150 (487)
T ss_pred EEeec-CCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCC--CceEEEEEcCCcEEEEEec
Confidence 66775 69999999999999999988744 23333337789999995333 2344444 7889999999999744443
Q ss_pred eecccCCc---cchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEcCeEEEEecc-c
Q 016020 268 HLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR-G 343 (396)
Q Consensus 268 ~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~gti~iWd~~-g 343 (396)
.|+-. .+++++-..-++.+.=|+.++.||.++..-..+.-.|.-+.+..+|++.++++.|..-+.|+|||+- |
T Consensus 151 ---~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G 227 (487)
T KOG0310|consen 151 ---GHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGGNSVKVWDLTTG 227 (487)
T ss_pred ---CCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCC
Confidence 77766 6888877778999999999999999997433344488889999999999999999999999999998 5
Q ss_pred -ceeeeecccc
Q 016020 344 -ELVTSFEDHL 353 (396)
Q Consensus 344 -eL~t~fedh~ 353 (396)
++++++..|.
T Consensus 228 ~qll~~~~~H~ 238 (487)
T KOG0310|consen 228 GQLLTSMFNHN 238 (487)
T ss_pred ceehhhhhccc
Confidence 7888888665
No 35
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=98.67 E-value=2.1e-06 Score=84.74 Aligned_cols=185 Identities=17% Similarity=0.239 Sum_probs=151.1
Q ss_pred eEEeeCCCCcEEEeecCCCeEEEEeccC---ceEEEEecc---CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEE
Q 016020 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKN---YTMLYSISD---KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVL 263 (396)
Q Consensus 190 fVEFDd~NgkIlt~~a~d~~YrVwdlkn---Ys~lysIs~---~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l 263 (396)
+|-+-+..|+|+|.++.|..+|+|++.. +.+.=.+++ ..|-+|++||.-.+|...+= +-..-||-=++|+-.
T Consensus 19 ~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSF--D~t~~Iw~k~~~efe 96 (312)
T KOG0645|consen 19 SVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASF--DATVVIWKKEDGEFE 96 (312)
T ss_pred EEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeec--cceEEEeecCCCcee
Confidence 6667776688999999999999999994 777777766 88999999998888887776 667778887776544
Q ss_pred EEEEeecccCCc---cchhhhhcceeeEeecCCeeeEEEccc---ceEEEecccccCCCceEEEeecCeEEEEEEc-CeE
Q 016020 264 KVFYHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRN---AELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTV 336 (396)
Q Consensus 264 ~s~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~---~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti 336 (396)
.... +=+|-++ +.|.+ .|+||..-..|.++=||-+.. -++.-|+.+|.-.++-.+|-|...|.++-|+ +||
T Consensus 97 cv~~-lEGHEnEVK~Vaws~-sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTI 174 (312)
T KOG0645|consen 97 CVAT-LEGHENEVKCVAWSA-SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTI 174 (312)
T ss_pred EEee-eeccccceeEEEEcC-CCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeE
Confidence 4322 2277777 88999 999999999999999999985 4666699999999999999999999999999 899
Q ss_pred EEEecc-c---ceeeeeccc--cccCCC-CCCCcEEEccCCcEEEEecc
Q 016020 337 AVWNFR-G---ELVTSFEDH--LLWHPD-CNTNNIYITSDQDLIISYCK 378 (396)
Q Consensus 337 ~iWd~~-g---eL~t~fedh--~l~~~~-c~~n~~~it~~qd~ii~~~~ 378 (396)
++|... + +++.+++.| -.|... -|++.--++.++|.-++-.+
T Consensus 175 k~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~ 223 (312)
T KOG0645|consen 175 KVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWR 223 (312)
T ss_pred EEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeee
Confidence 999988 5 489999999 466543 45566667777777666544
No 36
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=98.63 E-value=6.9e-07 Score=91.59 Aligned_cols=207 Identities=19% Similarity=0.328 Sum_probs=158.3
Q ss_pred hhhCCCCCCCcceee---cccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCc-------eEEEEecc--CceEEEEEc
Q 016020 168 IRRGKPDSGFALFES---ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNY-------TMLYSISD--KHVQEIKIS 235 (396)
Q Consensus 168 i~~gk~~~~~~LF~~---~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknY-------s~lysIs~--~~VqEIkiS 235 (396)
-+.|++++..|+|.. -.|- +++|+-|.-++|+++.|..++||..-.. +.+..+.+ +.|--|.+-
T Consensus 65 ~k~Gr~d~~~P~v~GHt~~vLD----i~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wH 140 (472)
T KOG0303|consen 65 VKTGRMDASYPLVCGHTAPVLD----IDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWH 140 (472)
T ss_pred ccccccCCCCCCccCccccccc----cccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeec
Confidence 367999999999986 2222 6789999999999999999999986432 23455554 666667776
Q ss_pred CCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCC--ccchhhhhcceeeEeecCCeeeEEEcccceEEEec-ccc
Q 016020 236 PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNK--KVDFIEQFNEKLLVKQENENLQILDVRNAELMEVS-RTE 312 (396)
Q Consensus 236 pg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk--~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~-~t~ 312 (396)
|-..= +.+.+..+-.++||++.||+.+.++. |+-. .+.|.- .|++|...-+|..++|||-+++++.... .-+
T Consensus 141 PtA~N-VLlsag~Dn~v~iWnv~tgeali~l~---hpd~i~S~sfn~-dGs~l~TtckDKkvRv~dpr~~~~v~e~~~he 215 (472)
T KOG0303|consen 141 PTAPN-VLLSAGSDNTVSIWNVGTGEALITLD---HPDMVYSMSFNR-DGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHE 215 (472)
T ss_pred ccchh-hHhhccCCceEEEEeccCCceeeecC---CCCeEEEEEecc-CCceeeeecccceeEEEcCCCCcEeeeccccc
Confidence 64421 22344457789999999999999877 3322 277887 9999999999999999999999999866 445
Q ss_pred cCCCceEEEeecCeEEEE----EEcCeEEEEeccc-c----eee--eeccccccCCCCCCCcEEEccCCcEEEEeccCCC
Q 016020 313 FMTPSAFIFLYENQLFLT----FRNRTVAVWNFRG-E----LVT--SFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEP 381 (396)
Q Consensus 313 ~~~PsAFiFly~~qLFLT----fs~gti~iWd~~g-e----L~t--~fedh~l~~~~c~~n~~~it~~qd~ii~~~~~~~ 381 (396)
...|.-.|||-++.+|-| .|++.+.+||-.. + +.+ +..+-+++--+--++.+|+..--|=-|-|+.-..
T Consensus 216 G~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~ 295 (472)
T KOG0303|consen 216 GAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITN 295 (472)
T ss_pred CCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecC
Confidence 677888999999997655 4669999999876 2 111 4445555555678899999999999999998776
Q ss_pred CC
Q 016020 382 ED 383 (396)
Q Consensus 382 ~~ 383 (396)
+.
T Consensus 296 d~ 297 (472)
T KOG0303|consen 296 EP 297 (472)
T ss_pred CC
Confidence 65
No 37
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.61 E-value=6.3e-08 Score=98.04 Aligned_cols=159 Identities=15% Similarity=0.202 Sum_probs=128.7
Q ss_pred eEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeec-CcEEEEE
Q 016020 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIED-GTVLKVF 266 (396)
Q Consensus 190 fVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~Iet-G~~l~s~ 266 (396)
+|-|-+ +--+++..+.|.+++|||+.||+++=++.+ +.|++|.++..--+|+.-+. ++|+++||.++ -+++++.
T Consensus 113 ~v~~hp-~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSs--Dl~~~LWd~~~~~~c~ks~ 189 (406)
T KOG0295|consen 113 RVIFHP-SEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSS--DLSAKLWDFDTFFRCIKSL 189 (406)
T ss_pred eeeecc-CceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCC--ccchhheeHHHHHHHHHHh
Confidence 444533 666778778999999999999999888877 78999999976666666666 89999999998 4444443
Q ss_pred E-eecccCCccchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc-CeEEEEeccc-
Q 016020 267 Y-HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNFRG- 343 (396)
Q Consensus 267 ~-~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~~g- 343 (396)
. |- |--..|.|++ .|.+|+.-..|+.+++||+.|+.++++-++|..+.+-+-=+.|+.||-+-++ .++.+|-+..
T Consensus 190 ~gh~-h~vS~V~f~P-~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~ 267 (406)
T KOG0295|consen 190 IGHE-HGVSSVFFLP-LGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATK 267 (406)
T ss_pred cCcc-cceeeEEEEe-cCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccc
Confidence 2 10 1123377888 7999999999999999999999999999999999999999999999999999 7999999877
Q ss_pred ceeeeecccc
Q 016020 344 ELVTSFEDHL 353 (396)
Q Consensus 344 eL~t~fedh~ 353 (396)
+-+.-|-+|.
T Consensus 268 ~~k~~lR~hE 277 (406)
T KOG0295|consen 268 QCKAELREHE 277 (406)
T ss_pred hhhhhhhccc
Confidence 4455555553
No 38
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.61 E-value=1.5e-06 Score=93.13 Aligned_cols=282 Identities=17% Similarity=0.207 Sum_probs=191.2
Q ss_pred ccceEEEeeccchhhhhhccccceeeeccccceEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhh
Q 016020 88 RTKVIEIVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEY 167 (396)
Q Consensus 88 RS~V~EIv~a~dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~ 167 (396)
|.|=.+.=..+..+++-+++|-...+|-+|-.+.=-+-.++--|=-+.|.- +-+++++ .||| ++.|.....-
T Consensus 15 RVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfia-RknWiv~----GsDD---~~IrVfnynt 86 (794)
T KOG0276|consen 15 RVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIA-RKNWIVT----GSDD---MQIRVFNYNT 86 (794)
T ss_pred ceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeee-ccceEEE----ecCC---ceEEEEeccc
Confidence 334444555678889999999988887776655444444433322233444 5567766 6788 8899887666
Q ss_pred hhhCCCCCCCcceeecccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCce-EEEEecc--CceEEEEEcCCeEEEEEe
Q 016020 168 IRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT-MLYSISD--KHVQEIKISPGIMLLIFN 244 (396)
Q Consensus 168 i~~gk~~~~~~LF~~~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs-~lysIs~--~~VqEIkiSpg~~Ll~~q 244 (396)
+++=+.=+.-+.|=...-+|| +.--+..++.|-++|.||..+-= +.-...+ --|++|.|-|.=-= .+.
T Consensus 87 ~ekV~~FeAH~DyIR~iavHP--------t~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~n-tFa 157 (794)
T KOG0276|consen 87 GEKVKTFEAHSDYIRSIAVHP--------TLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPN-TFA 157 (794)
T ss_pred ceeeEEeeccccceeeeeecC--------CCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCcc-cee
Confidence 555332122222223334444 23334456779999999998753 3333344 67899999864332 344
Q ss_pred cCCCeeeeEEEEeecCcEEEEEEeecccCCc---cchhhhh-cceeeEeecCCeeeEEEcccceEEEecccccCCCceEE
Q 016020 245 RSSSHVPLKILSIEDGTVLKVFYHLLHRNKK---VDFIEQF-NEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFI 320 (396)
Q Consensus 245 ~~~~~iplkIl~IetG~~l~s~~~~L~~sk~---i~FiE~~-~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFi 320 (396)
++..+-.+|+|++....+-.++. +|.+- |+|...- --||+.+.+|..++|||--|+.|+.++.+|..-.++.-
T Consensus 158 S~sLDrTVKVWslgs~~~nfTl~---gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~ 234 (794)
T KOG0276|consen 158 SASLDRTVKVWSLGSPHPNFTLE---GHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVF 234 (794)
T ss_pred eeeccccEEEEEcCCCCCceeee---ccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEE
Confidence 55568899999999888888888 77776 6666511 12899999999999999999999999999999999999
Q ss_pred EeecCeEEEEEEc-CeEEEEeccc-ceee--eecccccc--CCCCCCCcEEEccCCc-EEEEeccCCCCCccccCCC
Q 016020 321 FLYENQLFLTFRN-RTVAVWNFRG-ELVT--SFEDHLLW--HPDCNTNNIYITSDQD-LIISYCKAEPEDQWMEGSG 390 (396)
Q Consensus 321 Fly~~qLFLTfs~-gti~iWd~~g-eL~t--~fedh~l~--~~~c~~n~~~it~~qd-~ii~~~~~~~~~~~~~~~~ 390 (396)
|.|+=-++.|=|. ||++||+..- .+-. ++.---.| ...--++++-|--|+- ++|.-|..+|.-+ |..|+
T Consensus 235 fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v~lgreeP~vs-Md~~g 310 (794)
T KOG0276|consen 235 FHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTVKLGREEPAVS-MDSNG 310 (794)
T ss_pred ecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEEEccCCCCcee-ecCCc
Confidence 9999999999998 9999999765 2211 33333345 2224567777777764 5567777665433 44444
No 39
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=98.60 E-value=1.4e-06 Score=90.21 Aligned_cols=238 Identities=16% Similarity=0.193 Sum_probs=164.3
Q ss_pred eEEEeeccchhhhhhccccceeeeccccceEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhhhh
Q 016020 91 VIEIVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRR 170 (396)
Q Consensus 91 V~EIv~a~dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~ 170 (396)
-..|..+.+.|+..-.---.-.||..+|+.+-.+- ++.-.|-++-+|+.++.+|+.|+-.-.+ .-+.+..
T Consensus 224 ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~-Gh~kki~~v~~~~~~~~v~~aSad~~i~-----vws~~~~---- 293 (506)
T KOG0289|consen 224 ALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLK-GHTKKITSVKFHKDLDTVITASADEIIR-----VWSVPLS---- 293 (506)
T ss_pred EEeecCCCCcceecCCCCceEEEecchhhhhhhcc-CcceEEEEEEeccchhheeecCCcceEE-----eeccccc----
Confidence 34555555666666555566678888887777664 4445677789999999999987543111 1111100
Q ss_pred CCCCCCCcceeecccCCCCeEEe--eCCCCcEEEeecCCCeEEEEeccCceEEEEecc----CceEEEEEcCCeEEEEEe
Q 016020 171 GKPDSGFALFESESLKWPGFVEF--DDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD----KHVQEIKISPGIMLLIFN 244 (396)
Q Consensus 171 gk~~~~~~LF~~~~l~~PgfVEF--Dd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~----~~VqEIkiSpg~~Ll~~q 244 (396)
..| +.+..|-+=|-| -++||+-+.+.+.|++|-+-|+.+.+++-..++ .++....+-|+-+++...
T Consensus 294 -----s~~---~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtg 365 (506)
T KOG0289|consen 294 -----SEP---TSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTG 365 (506)
T ss_pred -----cCc---cccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEecc
Confidence 000 011111111111 245899999999999999999999999999988 468999999998887777
Q ss_pred cCCCeeeeEEEEeecCcEEEEEEeecccCCc---cchhhhhcceeeEeecCCeeeEEEcccceEEEe-cccccCCCceEE
Q 016020 245 RSSSHVPLKILSIEDGTVLKVFYHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNAELMEV-SRTEFMTPSAFI 320 (396)
Q Consensus 245 ~~~~~iplkIl~IetG~~l~s~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v-~~t~~~~PsAFi 320 (396)
.. +.-+||||+..+..+..|- +|+.+ |+|.| -|=+|.+..+|.++++||+|.-+..++ ...++....+..
T Consensus 366 t~--d~~vkiwdlks~~~~a~Fp---ght~~vk~i~FsE-NGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~ 439 (506)
T KOG0289|consen 366 TP--DGVVKIWDLKSQTNVAKFP---GHTGPVKAISFSE-NGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLS 439 (506)
T ss_pred CC--CceEEEEEcCCccccccCC---CCCCceeEEEecc-CceEEEEEecCCeEEEEEehhhcccceeeccccccceeEE
Confidence 77 5678999999999777666 67776 89999 888899999999999999999887773 334444556666
Q ss_pred EeecCeEEEEEEcCeEEEEecc----c-ceeeeecccc
Q 016020 321 FLYENQLFLTFRNRTVAVWNFR----G-ELVTSFEDHL 353 (396)
Q Consensus 321 Fly~~qLFLTfs~gti~iWd~~----g-eL~t~fedh~ 353 (396)
|-..+++ |......+.||-+. . ..+..|.||.
T Consensus 440 fD~SGt~-L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~s 476 (506)
T KOG0289|consen 440 FDQSGTY-LGIAGSDLQVYICKKKTKSWTEIKELADHS 476 (506)
T ss_pred EcCCCCe-EEeecceeEEEEEecccccceeeehhhhcc
Confidence 6555554 44446677887776 2 3444555554
No 40
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=98.60 E-value=5.1e-07 Score=93.84 Aligned_cols=114 Identities=17% Similarity=0.314 Sum_probs=94.3
Q ss_pred EEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcC----------CeEEEEEecCCCeeeeEEEEee
Q 016020 191 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISP----------GIMLLIFNRSSSHVPLKILSIE 258 (396)
Q Consensus 191 VEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSp----------g~~Ll~~q~~~~~iplkIl~Ie 258 (396)
+|||+ .|..|+.++.|++.|+|+|++-.+.=.+-+ ++|--|++|| |.|++-... +-.+++||++
T Consensus 365 lk~n~-tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~---dstV~lwdv~ 440 (524)
T KOG0273|consen 365 LKWNP-TGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASF---DSTVKLWDVE 440 (524)
T ss_pred EEECC-CCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeec---CCeEEEEEcc
Confidence 58888 899999999999999999998875544444 6777888884 456554444 4679999999
Q ss_pred cCcEEEEEEeecccCCc---cchhhhhcceeeEeecCCeeeEEEcccceEEEecccc
Q 016020 259 DGTVLKVFYHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTE 312 (396)
Q Consensus 259 tG~~l~s~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~ 312 (396)
.|.++..|. .|+-+ +.|++ .++||+.+.-|+.+.||++.++++++-....
T Consensus 441 ~gv~i~~f~---kH~~pVysvafS~-~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~ 493 (524)
T KOG0273|consen 441 SGVPIHTLM---KHQEPVYSVAFSP-NGRYLASGSLDGCVHIWSTKTGKLVKSYQGT 493 (524)
T ss_pred CCceeEeec---cCCCceEEEEecC-CCcEEEecCCCCeeEeccccchheeEeecCC
Confidence 999999986 55555 89999 9999999999999999999999999865443
No 41
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=98.56 E-value=1.5e-05 Score=69.61 Aligned_cols=186 Identities=16% Similarity=0.290 Sum_probs=133.4
Q ss_pred eEEeeCCCCcEEEeecCCCeEEEEeccCce-EEEEecc-C--ceEEEEE-cCCeEEEEEecCCCeeeeEEEEeec-CcEE
Q 016020 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYT-MLYSISD-K--HVQEIKI-SPGIMLLIFNRSSSHVPLKILSIED-GTVL 263 (396)
Q Consensus 190 fVEFDd~NgkIlt~~a~d~~YrVwdlknYs-~lysIs~-~--~VqEIki-Spg~~Ll~~q~~~~~iplkIl~Iet-G~~l 263 (396)
-++|+. ++..+.....|+.+++|++.+.. .+..+.. . .+..+.. ++..-.++.........+++|++.+ +...
T Consensus 70 ~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 148 (466)
T COG2319 70 SIAFSP-DGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLI 148 (466)
T ss_pred EEEECC-CCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEE
Confidence 356776 56666666689999999999997 6767766 2 5788887 5444322222222356999999999 7777
Q ss_pred EEEEeecccCC---ccchhhhhcceeeEeec-CCeeeEEEcccceEEEecccccCCCceEEEeecCe-EEEE-EEcCeEE
Q 016020 264 KVFYHLLHRNK---KVDFIEQFNEKLLVKQE-NENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQ-LFLT-FRNRTVA 337 (396)
Q Consensus 264 ~s~~~~L~~sk---~i~FiE~~~ekLLIKQe-d~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~q-LFLT-fs~gti~ 337 (396)
..+. .+.. .+.|.+ .+.++..... ++.+++||+.+++...+...+.......-|.+++. ++++ ..+++|.
T Consensus 149 ~~~~---~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~ 224 (466)
T COG2319 149 RTLE---GHSESVTSLAFSP-DGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIR 224 (466)
T ss_pred EEEe---cCcccEEEEEECC-CCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEE
Confidence 7666 3333 478888 5557777775 99999999999999998888999999999998887 6777 4559999
Q ss_pred EEecc-cceee-eeccccccC--CCCCCCcEEEccCCcEEEEeccCC
Q 016020 338 VWNFR-GELVT-SFEDHLLWH--PDCNTNNIYITSDQDLIISYCKAE 380 (396)
Q Consensus 338 iWd~~-geL~t-~fedh~l~~--~~c~~n~~~it~~qd~ii~~~~~~ 380 (396)
+||.+ ++... .++.|.... ...+++..+++...|-.+......
T Consensus 225 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 271 (466)
T COG2319 225 LWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLR 271 (466)
T ss_pred EEECCCCcEEeeecCCCCcceeEeECCCCCEEEEecCCCcEEEeeec
Confidence 99988 45555 677776653 345666666666665555444433
No 42
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.55 E-value=1.4e-06 Score=94.60 Aligned_cols=151 Identities=16% Similarity=0.229 Sum_probs=113.7
Q ss_pred CCcEEEeecCCCeEEEEeccCceEEEEecc---CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccC
Q 016020 197 NGKVLTYSAQDSIYKVFDLKNYTMLYSISD---KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRN 273 (396)
Q Consensus 197 NgkIlt~~a~d~~YrVwdlknYs~lysIs~---~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~s 273 (396)
+|+++.+++-||++|.|||+.|..--+... -.+.++.+-|.=- ++..++.++.-+.+|++|||+.+--+. +|-
T Consensus 403 ~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGe-lV~AG~~d~F~IfvWS~qTGqllDiLs---GHE 478 (893)
T KOG0291|consen 403 RGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGE-LVCAGAQDSFEIFVWSVQTGQLLDILS---GHE 478 (893)
T ss_pred cCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCC-EEEeeccceEEEEEEEeecCeeeehhc---CCC
Confidence 467788888899999999999996555544 5566777765333 355666678999999999999998777 888
Q ss_pred Cccc---hhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecC-eEEEEEEcCeEEEEecccc-eeee
Q 016020 274 KKVD---FIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYEN-QLFLTFRNRTVAVWNFRGE-LVTS 348 (396)
Q Consensus 274 k~i~---FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~-qLFLTfs~gti~iWd~~ge-L~t~ 348 (396)
.+|- |.+ .++-|...+=|..++||||-.+.-+.=.-.+.-..-++-|.|+| +|=++-.+|.|.+||..-. .+++
T Consensus 479 gPVs~l~f~~-~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~ 557 (893)
T KOG0291|consen 479 GPVSGLSFSP-DGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGS 557 (893)
T ss_pred CcceeeEEcc-ccCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeecc
Confidence 8854 877 99999999999999999999873222111222344678888855 6778888899999999863 5545
Q ss_pred eccc
Q 016020 349 FEDH 352 (396)
Q Consensus 349 fedh 352 (396)
+|+.
T Consensus 558 Idgr 561 (893)
T KOG0291|consen 558 IDGR 561 (893)
T ss_pred ccch
Confidence 5543
No 43
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.53 E-value=6.8e-06 Score=89.44 Aligned_cols=185 Identities=13% Similarity=0.198 Sum_probs=145.0
Q ss_pred CeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEE
Q 016020 189 GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVF 266 (396)
Q Consensus 189 gfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~ 266 (396)
.-+++.+ -|..+|..+.|+-+||||..-.-|+...+. -.|.-++|+-.=..|+...- +..+..||+..+..-.+|
T Consensus 354 ~~l~YSp-Dgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSL--DGtVRAwDlkRYrNfRTf 430 (893)
T KOG0291|consen 354 TSLAYSP-DGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSL--DGTVRAWDLKRYRNFRTF 430 (893)
T ss_pred eeEEECC-CCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeec--CCeEEeeeecccceeeee
Confidence 3467777 577778889999999999999999999998 78888888855444455554 788999999999998888
Q ss_pred EeecccCCccchhhhh----cceeeEe-ecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc-CeEEEEe
Q 016020 267 YHLLHRNKKVDFIEQF----NEKLLVK-QENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWN 340 (396)
Q Consensus 267 ~~~L~~sk~i~FiE~~----~ekLLIK-Qed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd 340 (396)
.. ..++||.++- ||-+..+ |+.=.|.+|++.||+++.++.+|--+.+..-|.+++++..+-|+ .||++||
T Consensus 431 t~----P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~ 506 (893)
T KOG0291|consen 431 TS----PEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWD 506 (893)
T ss_pred cC----CCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEE
Confidence 73 2678887754 5555554 46668999999999999999999999999999999999999999 8999999
Q ss_pred cccc--eeeeec--cccccCCCCCCCcEEEccCCcEEEEeccCC
Q 016020 341 FRGE--LVTSFE--DHLLWHPDCNTNNIYITSDQDLIISYCKAE 380 (396)
Q Consensus 341 ~~ge--L~t~fe--dh~l~~~~c~~n~~~it~~qd~ii~~~~~~ 380 (396)
.=+. -+-.++ ..++-+..-|+|+=.-.++-|=-|.+..+.
T Consensus 507 if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~ 550 (893)
T KOG0291|consen 507 IFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIK 550 (893)
T ss_pred eeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhh
Confidence 8664 444443 345555557777776666666555555544
No 44
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=5.6e-05 Score=75.46 Aligned_cols=268 Identities=12% Similarity=0.174 Sum_probs=174.0
Q ss_pred cceEEEeec--cchhhhhhccccceeeeccccceEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeeh-
Q 016020 89 TKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKI- 165 (396)
Q Consensus 89 S~V~EIv~a--~dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~- 165 (396)
.+|.+|=+. -+.+++=++.-.-+.||..+|+..|.||--..-+=+ +=|=.-..++|--|. +.| -.++|-++.-
T Consensus 15 ~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~-~~Fth~~~~~i~sSt-k~d--~tIryLsl~dN 90 (311)
T KOG1446|consen 15 GKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDL-ACFTHHSNTVIHSST-KED--DTIRYLSLHDN 90 (311)
T ss_pred CceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccE-EEEecCCceEEEccC-CCC--CceEEEEeecC
Confidence 344444444 234444466667899999999999999976443322 223345566666554 233 2355555432
Q ss_pred hhhhhCCCCCCCcceeecccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEeccCceEEEEEcCCeEEEEEec
Q 016020 166 EYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNR 245 (396)
Q Consensus 166 ~~i~~gk~~~~~~LF~~~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~~~VqEIkiSpg~~Ll~~q~ 245 (396)
.||| -|..-. +.=-.++-++++ ..-.+++.|+++|.|||+.-++.--+.-..=--+++.|.=.++...-
T Consensus 91 kylR---------YF~GH~-~~V~sL~~sP~~-d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~ 159 (311)
T KOG1446|consen 91 KYLR---------YFPGHK-KRVNSLSVSPKD-DTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALAN 159 (311)
T ss_pred ceEE---------EcCCCC-ceEEEEEecCCC-CeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEec
Confidence 1222 222100 001145566766 55667888999999999977765555443333455665433333333
Q ss_pred CCCeeeeEEEEeec--CcEEEEEEeecccCC---ccchhhhhcceeeEeecCCeeeEEEcccceEEE---ecccccCCCc
Q 016020 246 SSSHVPLKILSIED--GTVLKVFYHLLHRNK---KVDFIEQFNEKLLVKQENENLQILDVRNAELME---VSRTEFMTPS 317 (396)
Q Consensus 246 ~~~~iplkIl~Iet--G~~l~s~~~~L~~sk---~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~---v~~t~~~~Ps 317 (396)
..+ .+||+|+-. +.+--+|...-+... .|+|.. .|.+||+--+++.+.++|-=+|.++. ..+.....|-
T Consensus 160 ~~~--~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~-dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~ 236 (311)
T KOG1446|consen 160 GSE--LIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSP-DGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPL 236 (311)
T ss_pred CCC--eEEEEEecccCCCCceeEccCCCCccceeeeEEcC-CCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcce
Confidence 322 889999875 444445554322333 399999 99999999999999999999999877 4555666778
Q ss_pred eEEEeecCeEEEEEEc-CeEEEEeccc-ceeeeecc-ccccCCC---CCCCcEEEccCCcEEE
Q 016020 318 AFIFLYENQLFLTFRN-RTVAVWNFRG-ELVTSFED-HLLWHPD---CNTNNIYITSDQDLII 374 (396)
Q Consensus 318 AFiFly~~qLFLTfs~-gti~iWd~~g-eL~t~fed-h~l~~~~---c~~n~~~it~~qd~ii 374 (396)
...|.||++-+|+=++ |+|-+|+.+. ..|..+.. +.-..+. =|--..|+|++.-|.+
T Consensus 237 ~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s~l~f 299 (311)
T KOG1446|consen 237 SATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASSNLVF 299 (311)
T ss_pred eEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCceEEE
Confidence 9999999999999999 9999999976 67777776 3333222 3444578888877765
No 45
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.46 E-value=1.1e-06 Score=95.23 Aligned_cols=181 Identities=17% Similarity=0.295 Sum_probs=142.3
Q ss_pred eEEeeCCCCcEEEeecCCCeEEEEeccCceE---EEEeccC-ceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEE
Q 016020 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM---LYSISDK-HVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKV 265 (396)
Q Consensus 190 fVEFDd~NgkIlt~~a~d~~YrVwdlknYs~---lysIs~~-~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s 265 (396)
|+--|-.+|+.+|.++. ..+-+|||++.+. |....+. .|..++-||++.+|.-.-+ +..++||+.++++++-.
T Consensus 26 ~~~~~~~~Gr~va~~a~-E~vn~WdlRtge~~~~l~~~~~k~evt~l~~~~d~l~lAVGYa--DGsVqif~~~s~~~~~t 102 (888)
T KOG0306|consen 26 FVVKRSGKGRAVAVSAL-EQVNIWDLRTGEIEKKLILLKKKAEVTCLRSSDDILLLAVGYA--DGSVQIFSLESEEILIT 102 (888)
T ss_pred EEEeecCCCcEEEEecc-ccEeEEeeecchhhhhhhhhcccceEEEeeccCCcceEEEEec--CceEEeeccCCCceeee
Confidence 55566667999886554 5688999999954 4444445 8999999999999998888 78899999999998888
Q ss_pred EEeecccCCc---cchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc-CeEEEEec
Q 016020 266 FYHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNF 341 (396)
Q Consensus 266 ~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~ 341 (396)
|+ +|.+- ++|-. .|-.|+.+..|..|-+|||..-..+-=+++|.+....+.|+.+....++.+. +.|++||+
T Consensus 103 fn---gHK~AVt~l~fd~-~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL 178 (888)
T KOG0306|consen 103 FN---GHKAAVTTLKFDK-IGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDL 178 (888)
T ss_pred ec---ccccceEEEEEcc-cCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCCCeEEEEeccCceEEEEec
Confidence 88 67666 56655 8999999999999999999998888889999999999999998888887776 89999999
Q ss_pred ccc--eee-eeccccccCCCCCCCcEEEccCCcEEEEecc
Q 016020 342 RGE--LVT-SFEDHLLWHPDCNTNNIYITSDQDLIISYCK 378 (396)
Q Consensus 342 ~ge--L~t-~fedh~l~~~~c~~n~~~it~~qd~ii~~~~ 378 (396)
.-+ ..| -.+.-.-|+. |...+.-||+.-|.=+-..+
T Consensus 179 ~tqhCf~Thvd~r~Eiw~l-~~~~~~lvt~~~dse~~v~~ 217 (888)
T KOG0306|consen 179 ETQHCFETHVDHRGEIWAL-VLDEKLLVTAGTDSELKVWE 217 (888)
T ss_pred ccceeeeEEecccceEEEE-EEecceEEEEecCCceEEEE
Confidence 886 333 3344445543 55557777766554443333
No 46
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.46 E-value=1.1e-06 Score=94.14 Aligned_cols=163 Identities=17% Similarity=0.264 Sum_probs=123.2
Q ss_pred CCcEEEeecCCCeEEEEeccCc--eEEEEecc--CceEEEEE-cCCeEEEEEecCCCeeeeEEEEeecC--cEEEEEEee
Q 016020 197 NGKVLTYSAQDSIYKVFDLKNY--TMLYSISD--KHVQEIKI-SPGIMLLIFNRSSSHVPLKILSIEDG--TVLKVFYHL 269 (396)
Q Consensus 197 NgkIlt~~a~d~~YrVwdlknY--s~lysIs~--~~VqEIki-Spg~~Ll~~q~~~~~iplkIl~IetG--~~l~s~~~~ 269 (396)
||+.+.+.++|.++|||+..-. .++-.|-. +=|+++.. -+...|.++.+- +--+.||||.+| +.+++++..
T Consensus 84 ~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGL--D~~IflWDin~~~~~l~~s~n~~ 161 (735)
T KOG0308|consen 84 NGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGL--DRKIFLWDINTGTATLVASFNNV 161 (735)
T ss_pred CCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCC--CccEEEEEccCcchhhhhhcccc
Confidence 6889999999999999998766 56666655 77888888 677777666655 889999999999 567766622
Q ss_pred ----ccc-CCc----cchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc-CeEEEE
Q 016020 270 ----LHR-NKK----VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVW 339 (396)
Q Consensus 270 ----L~~-sk~----i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iW 339 (396)
|.. .++ ++ +-|.+--|+.+--.+-|++||.++++.+-=+++|.+-.++.+-+.+|.-.|+-|+ |||++|
T Consensus 162 t~~sl~sG~k~siYSLA-~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlW 240 (735)
T KOG0308|consen 162 TVNSLGSGPKDSIYSLA-MNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLW 240 (735)
T ss_pred ccccCCCCCccceeeee-cCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEee
Confidence 221 111 22 2234445666677888999999997777666799999999999999988888777 999999
Q ss_pred ecccc--eee-eeccccccCCCCCCC
Q 016020 340 NFRGE--LVT-SFEDHLLWHPDCNTN 362 (396)
Q Consensus 340 d~~ge--L~t-~fedh~l~~~~c~~n 362 (396)
|+.-+ +.| -.-+.-.|+..|+++
T Consensus 241 dLgqQrCl~T~~vH~e~VWaL~~~~s 266 (735)
T KOG0308|consen 241 DLGQQRCLATYIVHKEGVWALQSSPS 266 (735)
T ss_pred eccccceeeeEEeccCceEEEeeCCC
Confidence 99886 555 333445888887654
No 47
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.45 E-value=5.8e-06 Score=75.62 Aligned_cols=128 Identities=13% Similarity=0.227 Sum_probs=93.4
Q ss_pred EEEEeccC-ceEEEEEcCC-eEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCccchhhhhcceeeEeecC---Ce
Q 016020 220 MLYSISDK-HVQEIKISPG-IMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQEN---EN 294 (396)
Q Consensus 220 ~lysIs~~-~VqEIkiSpg-~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~i~FiE~~~ekLLIKQed---~~ 294 (396)
...++..+ .|.++.+||. -.+++..+.. ...+.||+++ |+.+.++.. ..-+.|.|.+ .|.+|++.-.+ +.
T Consensus 52 ~~i~l~~~~~I~~~~WsP~g~~favi~g~~-~~~v~lyd~~-~~~i~~~~~--~~~n~i~wsP-~G~~l~~~g~~n~~G~ 126 (194)
T PF08662_consen 52 ESIELKKEGPIHDVAWSPNGNEFAVIYGSM-PAKVTLYDVK-GKKIFSFGT--QPRNTISWSP-DGRFLVLAGFGNLNGD 126 (194)
T ss_pred ceeeccCCCceEEEEECcCCCEEEEEEccC-CcccEEEcCc-ccEeEeecC--CCceEEEECC-CCCEEEEEEccCCCcE
Confidence 44445443 4999999984 4444443321 2389999996 888877652 3344699998 89999998754 45
Q ss_pred eeEEEcccceEEEecccccCCCceEEEeecCeEEEEEE-------cCeEEEEecccceeeeeccccc
Q 016020 295 LQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-------NRTVAVWNFRGELVTSFEDHLL 354 (396)
Q Consensus 295 L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs-------~gti~iWd~~geL~t~fedh~l 354 (396)
|.+||+.+.+++...... .....-|.|+++.|+|.. ++.++||+++|+++...+-..|
T Consensus 127 l~~wd~~~~~~i~~~~~~--~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~l~~~~~~~l 191 (194)
T PF08662_consen 127 LEFWDVRKKKKISTFEHS--DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRLLYKKPFDEL 191 (194)
T ss_pred EEEEECCCCEEeeccccC--cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeEeEecchhhh
Confidence 999999998888764433 367889999999999986 5789999999987765443333
No 48
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=98.44 E-value=3e-07 Score=92.90 Aligned_cols=153 Identities=20% Similarity=0.309 Sum_probs=125.7
Q ss_pred EEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc---CceEEEEEc-CCeEEEEEecCCCeeeeEEEEeecCcEEEEE
Q 016020 191 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD---KHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVF 266 (396)
Q Consensus 191 VEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~---~~VqEIkiS-pg~~Ll~~q~~~~~iplkIl~IetG~~l~s~ 266 (396)
+.|.- ....||..+||+-+|||..+++.+|-.+.. +.|.++.+| +++.+| ++..+-.++|-++..|+.|++|
T Consensus 269 i~FSR-DsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiL---S~sfD~tvRiHGlKSGK~LKEf 344 (508)
T KOG0275|consen 269 ISFSR-DSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQIL---SASFDQTVRIHGLKSGKCLKEF 344 (508)
T ss_pred Eeecc-cHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhh---cccccceEEEeccccchhHHHh
Confidence 55665 567889999999999999999999998884 999999999 566653 3344688999999999999999
Q ss_pred EeecccCCc---cchhhhhcceeeEeecCCeeeEEEcccceEEEe--cccccCCCceEEEeecCeEEEEEEc--CeEEEE
Q 016020 267 YHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNAELMEV--SRTEFMTPSAFIFLYENQLFLTFRN--RTVAVW 339 (396)
Q Consensus 267 ~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v--~~t~~~~PsAFiFly~~qLFLTfs~--gti~iW 339 (396)
+ +|++. .-|-. .|.+|+...-|+.+++|+..+.+|..+ +.+...+.-..|-+|-+---+.+.| +++-|-
T Consensus 345 r---GHsSyvn~a~ft~-dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~im 420 (508)
T KOG0275|consen 345 R---GHSSYVNEATFTD-DGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIM 420 (508)
T ss_pred c---CccccccceEEcC-CCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEE
Confidence 9 88877 45776 999999999999999999999999863 3344556667777787665555555 799999
Q ss_pred ecccceeeeecc
Q 016020 340 NFRGELVTSFED 351 (396)
Q Consensus 340 d~~geL~t~fed 351 (396)
+.+|+.|.+|.-
T Consensus 421 n~qGQvVrsfsS 432 (508)
T KOG0275|consen 421 NMQGQVVRSFSS 432 (508)
T ss_pred eccceEEeeecc
Confidence 999999999863
No 49
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.42 E-value=3.4e-06 Score=90.37 Aligned_cols=168 Identities=11% Similarity=0.170 Sum_probs=139.3
Q ss_pred cEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEE-EEEeecccCCc
Q 016020 199 KVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLK-VFYHLLHRNKK 275 (396)
Q Consensus 199 kIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~-s~~~~L~~sk~ 275 (396)
-++...+.|..+|||++.+|+.+....+ +-+-.|.+-|-.-.+++.+. +|.+|+|+-|.+=... .|. +|+-.
T Consensus 68 nWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSD--Dm~iKlW~we~~wa~~qtfe---GH~Hy 142 (794)
T KOG0276|consen 68 NWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSD--DMTIKLWDWENEWACEQTFE---GHEHY 142 (794)
T ss_pred ceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCC--ccEEEEeeccCceeeeeEEc---CcceE
Confidence 3666778999999999999999988887 89999999999998888887 9999999999875544 466 77766
Q ss_pred ---cchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecC--eEEEEEEc-CeEEEEeccc-ceeee
Q 016020 276 ---VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYEN--QLFLTFRN-RTVAVWNFRG-ELVTS 348 (396)
Q Consensus 276 ---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~--qLFLTfs~-gti~iWd~~g-eL~t~ 348 (396)
|.|.+-+++......=|..+++|.+.+...-.++.+|.--.-+.=|++.+ -..+|-+| .+|+|||.|- +-|++
T Consensus 143 VMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~T 222 (794)
T KOG0276|consen 143 VMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQT 222 (794)
T ss_pred EEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHH
Confidence 88999999999999999999999999999999999998888888777644 46778887 8999999999 69999
Q ss_pred eccccccCCC---CCCCcEEEccCCc
Q 016020 349 FEDHLLWHPD---CNTNNIYITSDQD 371 (396)
Q Consensus 349 fedh~l~~~~---c~~n~~~it~~qd 371 (396)
+|+|.-=+.. -|+=.|+||..+|
T Consensus 223 LeGHt~Nvs~v~fhp~lpiiisgsED 248 (794)
T KOG0276|consen 223 LEGHTNNVSFVFFHPELPIIISGSED 248 (794)
T ss_pred hhcccccceEEEecCCCcEEEEecCC
Confidence 9999753332 2333445554444
No 50
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=98.41 E-value=4.9e-06 Score=81.75 Aligned_cols=157 Identities=15% Similarity=0.181 Sum_probs=122.0
Q ss_pred CCcEEEeecCCCeEEEEeccCceEEEEecc---CceEEEEEc-CCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeeccc
Q 016020 197 NGKVLTYSAQDSIYKVFDLKNYTMLYSISD---KHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHR 272 (396)
Q Consensus 197 NgkIlt~~a~d~~YrVwdlknYs~lysIs~---~~VqEIkiS-pg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~ 272 (396)
|.-=|..+-|++.+|||||++-++.-++-. +-||.+.+- +|.||.......+-+=-.+++=++-.++....-+..|
T Consensus 135 nQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah 214 (311)
T KOG0315|consen 135 NQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAH 214 (311)
T ss_pred CcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecc
Confidence 666678888999999999999986666543 667888775 7888877766655544444443334444443334455
Q ss_pred CCc---cchhhhhcceeeEeecCCeeeEEEcccc-eEEEecccccCCCceEEEeecCeEEEEEEc-CeEEEEeccc-cee
Q 016020 273 NKK---VDFIEQFNEKLLVKQENENLQILDVRNA-ELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNFRG-ELV 346 (396)
Q Consensus 273 sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~-ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~~g-eL~ 346 (396)
+.. +-|.+ .+.||..-.-|+..+||+.-+- |+-.+...+--+.---+|+-|++..||-++ +++++||... +.+
T Consensus 215 ~~~il~C~lSP-d~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v 293 (311)
T KOG0315|consen 215 NGHILRCLLSP-DVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEV 293 (311)
T ss_pred cceEEEEEECC-CCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCcee
Confidence 555 67777 9999999999999999999998 777788899888899999999999999998 8999999987 677
Q ss_pred eeeccccc
Q 016020 347 TSFEDHLL 354 (396)
Q Consensus 347 t~fedh~l 354 (396)
.-..+|.-
T Consensus 294 ~qy~gh~K 301 (311)
T KOG0315|consen 294 RQYQGHHK 301 (311)
T ss_pred eecCCccc
Confidence 77777753
No 51
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=98.41 E-value=4.6e-06 Score=85.56 Aligned_cols=170 Identities=15% Similarity=0.227 Sum_probs=130.9
Q ss_pred CCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEc-CCeEEEEEecCCCeeeeEEEEeecCcEEEEE-------
Q 016020 197 NGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVF------- 266 (396)
Q Consensus 197 NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiS-pg~~Ll~~q~~~~~iplkIl~IetG~~l~s~------- 266 (396)
-.+-+|+++-|+.+||||.+-..+++-+++ .-|.+||+. .|.+ .+.+. +-.+|+|...+|+....+
T Consensus 216 ~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gli--ySgS~--DrtIkvw~a~dG~~~r~lkGHahwv 291 (480)
T KOG0271|consen 216 PCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLI--YSGSQ--DRTIKVWRALDGKLCRELKGHAHWV 291 (480)
T ss_pred CccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceE--EecCC--CceEEEEEccchhHHHhhcccchhe
Confidence 356899999999999999999999999999 899999998 5554 33333 678899988885543211
Q ss_pred -------------------------------------------------------Eeec--------------ccCCc--
Q 016020 267 -------------------------------------------------------YHLL--------------HRNKK-- 275 (396)
Q Consensus 267 -------------------------------------------------------~~~L--------------~~sk~-- 275 (396)
..+| +|++.
T Consensus 292 N~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn 371 (480)
T KOG0271|consen 292 NHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVN 371 (480)
T ss_pred eeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhhee
Confidence 1111 11222
Q ss_pred -cchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc-CeEEEEeccc-ceeeeeccc
Q 016020 276 -VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNFRG-ELVTSFEDH 352 (396)
Q Consensus 276 -i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~~g-eL~t~fedh 352 (396)
+-|.+ .+-||.....|++++.||.++||-+-+.++|-.++.-.-.+.|+.|.|+-|. .|+++||++- .|+-.+-+|
T Consensus 372 ~V~fSP-d~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh 450 (480)
T KOG0271|consen 372 HVSFSP-DGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGH 450 (480)
T ss_pred eEEECC-CccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCC
Confidence 67888 9999999999999999999999999999999988888888999999999988 7999999999 477777666
Q ss_pred cc--c-CCCCCCCcEEEccCCc
Q 016020 353 LL--W-HPDCNTNNIYITSDQD 371 (396)
Q Consensus 353 ~l--~-~~~c~~n~~~it~~qd 371 (396)
.= + ++=.||+.-..+...|
T Consensus 451 ~DEVf~vDwspDG~rV~sggkd 472 (480)
T KOG0271|consen 451 ADEVFAVDWSPDGQRVASGGKD 472 (480)
T ss_pred CceEEEEEecCCCceeecCCCc
Confidence 32 1 1115555555544444
No 52
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=98.32 E-value=5.2e-06 Score=87.54 Aligned_cols=95 Identities=16% Similarity=0.226 Sum_probs=81.0
Q ss_pred CeeeeEEEEeecCcEEEE-EEeecccCCc-----cchhhhhcceeeEeecCCeeeEEEccc---ceEEEecccccC--CC
Q 016020 248 SHVPLKILSIEDGTVLKV-FYHLLHRNKK-----VDFIEQFNEKLLVKQENENLQILDVRN---AELMEVSRTEFM--TP 316 (396)
Q Consensus 248 ~~iplkIl~IetG~~l~s-~~~~L~~sk~-----i~FiE~~~ekLLIKQed~~L~I~Dv~~---~ki~~v~~t~~~--~P 316 (396)
.+..|.||++.+-+.... |+......++ +.|.. .+..|.-+=-|++|||||.++ +-.++|..+|.. ..
T Consensus 289 ~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nr-dg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~I 367 (641)
T KOG0772|consen 289 YDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNR-DGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDI 367 (641)
T ss_pred CCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCC-CcchhhhcccCCceeeeecCCcccccceEeeeccCCCCce
Confidence 457899999999776665 7777777666 77887 888888888999999999866 445678899988 88
Q ss_pred ceEEEeecCeEEEEEEc-CeEEEEeccc
Q 016020 317 SAFIFLYENQLFLTFRN-RTVAVWNFRG 343 (396)
Q Consensus 317 sAFiFly~~qLFLTfs~-gti~iWd~~g 343 (396)
++..|+|+++..|+=+. ++.++||++-
T Consensus 368 tsi~FS~dg~~LlSRg~D~tLKvWDLrq 395 (641)
T KOG0772|consen 368 TSISFSYDGNYLLSRGFDDTLKVWDLRQ 395 (641)
T ss_pred eEEEeccccchhhhccCCCceeeeeccc
Confidence 99999999999999888 8999999998
No 53
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=98.31 E-value=6.4e-06 Score=80.97 Aligned_cols=139 Identities=13% Similarity=0.208 Sum_probs=103.2
Q ss_pred CcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcE--EEEEEeecccC
Q 016020 198 GKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTV--LKVFYHLLHRN 273 (396)
Q Consensus 198 gkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~--l~s~~~~L~~s 273 (396)
-+||+..+-|.++|+|-+.++.+..+|.. -.|--+.++|+--.|..... --++|+||.++.+ +++|. .++
T Consensus 10 ~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~---qhvRlyD~~S~np~Pv~t~e---~h~ 83 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN---QHVRLYDLNSNNPNPVATFE---GHT 83 (311)
T ss_pred ceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC---CeeEEEEccCCCCCceeEEe---ccC
Confidence 68999999999999999999999999987 45556666665444333332 4589999999886 55565 555
Q ss_pred Cc---cchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEE-eecCeEEEEEEcCeEEEEecccc
Q 016020 274 KK---VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIF-LYENQLFLTFRNRTVAVWNFRGE 344 (396)
Q Consensus 274 k~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiF-ly~~qLFLTfs~gti~iWd~~ge 344 (396)
|. |-|-+ .|.-++.+.||+.++|||+++-.+.+...-. .+.-..+- =...+||..=.+|-|.|||+.-+
T Consensus 84 kNVtaVgF~~-dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~-spVn~vvlhpnQteLis~dqsg~irvWDl~~~ 156 (311)
T KOG0315|consen 84 KNVTAVGFQC-DGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN-SPVNTVVLHPNQTELISGDQSGNIRVWDLGEN 156 (311)
T ss_pred CceEEEEEee-cCeEEEecCCCceEEEEeccCcccchhccCC-CCcceEEecCCcceEEeecCCCcEEEEEccCC
Confidence 55 77876 9999999999999999999996666543222 22222222 23567888888899999998754
No 54
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=98.30 E-value=3.6e-05 Score=76.95 Aligned_cols=183 Identities=15% Similarity=0.239 Sum_probs=147.6
Q ss_pred eecccCCCCeE---EeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcC-CeEEEEEecCCCeeeeEE
Q 016020 181 ESESLKWPGFV---EFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISP-GIMLLIFNRSSSHVPLKI 254 (396)
Q Consensus 181 ~~~~l~~PgfV---EFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSp-g~~Ll~~q~~~~~iplkI 254 (396)
..+--.|-||+ +|=| ++-|||. +-|.+.-+||.++.+++-++.+ -+|..+.++| ....+++..- +...||
T Consensus 138 ~r~l~gHtgylScC~f~d-D~~ilT~-SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~c--D~~akl 213 (343)
T KOG0286|consen 138 SRELAGHTGYLSCCRFLD-DNHILTG-SGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGC--DKSAKL 213 (343)
T ss_pred eeeecCccceeEEEEEcC-CCceEec-CCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEeccc--ccceee
Confidence 33445677776 4555 6888885 4589999999999999999988 8999999999 7777777776 889999
Q ss_pred EEeecCcEEEEEEeecccCCc---cchhhhhcceeeEeecCCeeeEEEcccceEEE--ecccccCCCceEEEeecCeEEE
Q 016020 255 LSIEDGTVLKVFYHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNAELME--VSRTEFMTPSAFIFLYENQLFL 329 (396)
Q Consensus 255 l~IetG~~l~s~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~--v~~t~~~~PsAFiFly~~qLFL 329 (396)
||+-.|...-+|. .|..+ |.|-+ .|.-+..+.+|+..+.||++..+-+. -+..........-|+--+.|.+
T Consensus 214 WD~R~~~c~qtF~---ghesDINsv~ffP-~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLf 289 (343)
T KOG0286|consen 214 WDVRSGQCVQTFE---GHESDINSVRFFP-SGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLF 289 (343)
T ss_pred eeccCcceeEeec---ccccccceEEEcc-CCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEE
Confidence 9999999999998 77666 78988 99999999999999999999944333 3455666778888999999988
Q ss_pred E-EEcCeEEEEeccc-ceeeeeccccccCC---CCCCCcEEEccCCc
Q 016020 330 T-FRNRTVAVWNFRG-ELVTSFEDHLLWHP---DCNTNNIYITSDQD 371 (396)
Q Consensus 330 T-fs~gti~iWd~~g-eL~t~fedh~l~~~---~c~~n~~~it~~qd 371 (396)
. ..+.++.+||.=- +.++.+++|.-=+. -|||+...-|..-|
T Consensus 290 agy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWD 336 (343)
T KOG0286|consen 290 AGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWD 336 (343)
T ss_pred eeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchh
Confidence 8 7789999999754 89999988854332 38888877765433
No 55
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=98.29 E-value=8.2e-05 Score=65.11 Aligned_cols=147 Identities=17% Similarity=0.296 Sum_probs=108.1
Q ss_pred EEEeecC-CCeEEEEeccC-ceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCc
Q 016020 200 VLTYSAQ-DSIYKVFDLKN-YTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKK 275 (396)
Q Consensus 200 Ilt~~a~-d~~YrVwdlkn-Ys~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~ 275 (396)
.++..+. |+.+++||..+ ...+..+.. +.|..+.++|+.-.++.... ....+++|++.+++.+..+.. |...
T Consensus 125 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~ 200 (466)
T COG2319 125 ILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSS-LDGTIKLWDLRTGKPLSTLAG---HTDP 200 (466)
T ss_pred EEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCC-CCCceEEEEcCCCceEEeecc---CCCc
Confidence 5555444 99999999998 766665555 88999999988864444432 578999999999988888873 4444
Q ss_pred ---cchhhhhcceeeEe-ecCCeeeEEEcccceEEE-ecccccCCCceEEEeecCeEEEEEEc-CeEEEEecccce--ee
Q 016020 276 ---VDFIEQFNEKLLVK-QENENLQILDVRNAELME-VSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNFRGEL--VT 347 (396)
Q Consensus 276 ---i~FiE~~~ekLLIK-Qed~~L~I~Dv~~~ki~~-v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~~geL--~t 347 (396)
+.|.+ .+..+++. -.|..+++||..+++... ....+.... .-.|.++++++++.+. +++.+||..... ..
T Consensus 201 v~~~~~~~-~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 278 (466)
T COG2319 201 VSSLAFSP-DGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLR 278 (466)
T ss_pred eEEEEEcC-CcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEE
Confidence 77773 55545555 789999999999888888 566666654 3379999877775555 999999999732 33
Q ss_pred eeccc
Q 016020 348 SFEDH 352 (396)
Q Consensus 348 ~fedh 352 (396)
.+..|
T Consensus 279 ~~~~~ 283 (466)
T COG2319 279 TLSGH 283 (466)
T ss_pred EEecC
Confidence 33444
No 56
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.27 E-value=7.2e-06 Score=89.02 Aligned_cols=154 Identities=16% Similarity=0.255 Sum_probs=127.4
Q ss_pred EEeeCCCCcEEEeecCCCeEEEEeccC---------c-------------------e-----------------------
Q 016020 191 VEFDDVNGKVLTYSAQDSIYKVFDLKN---------Y-------------------T----------------------- 219 (396)
Q Consensus 191 VEFDd~NgkIlt~~a~d~~YrVwdlkn---------Y-------------------s----------------------- 219 (396)
.+|.. -||-||...+|+.+|||-..+ | +
T Consensus 273 mKFS~-DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~~~~~p 351 (712)
T KOG0283|consen 273 MKFSH-DGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSPCVLLP 351 (712)
T ss_pred EEeCC-CCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCCccccCC
Confidence 58988 899999999999999999888 0 0
Q ss_pred -EEEEecc----------CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCc---cchhhhhcce
Q 016020 220 -MLYSISD----------KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKK---VDFIEQFNEK 285 (396)
Q Consensus 220 -~lysIs~----------~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~---i~FiE~~~ek 285 (396)
..+.|++ .+|.|+-||..=+|| +.+. +..++||.+..-++|+.|.| +.. |+|.+.+..|
T Consensus 352 ~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLL-SSSM--DKTVRLWh~~~~~CL~~F~H----ndfVTcVaFnPvDDry 424 (712)
T KOG0283|consen 352 LKAFVFSEKPFCEFKGHTADILDLSWSKNNFLL-SSSM--DKTVRLWHPGRKECLKVFSH----NDFVTCVAFNPVDDRY 424 (712)
T ss_pred CccccccccchhhhhccchhheecccccCCeeE-eccc--cccEEeecCCCcceeeEEec----CCeeEEEEecccCCCc
Confidence 1222332 578889999887764 4444 58999999999999999983 344 9999999999
Q ss_pred eeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc-CeEEEEeccc-ceeeeecccc
Q 016020 286 LLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNFRG-ELVTSFEDHL 353 (396)
Q Consensus 286 LLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~~g-eL~t~fedh~ 353 (396)
.+.+.-|+-+|||+|...+...=...+ .-..|.-|.|+||..+.=+- |.|.+|+++| .+++++.=+.
T Consensus 425 FiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~ 493 (712)
T KOG0283|consen 425 FISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRL 493 (712)
T ss_pred EeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEee
Confidence 999999999999999999998866665 67899999999999888777 9999999999 6888665443
No 57
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.23 E-value=1e-05 Score=88.12 Aligned_cols=224 Identities=21% Similarity=0.262 Sum_probs=169.3
Q ss_pred cchhhhhhccccceeeeccccceEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCC---CC
Q 016020 98 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGK---PD 174 (396)
Q Consensus 98 ~dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk---~~ 174 (396)
.-+|+.-..+|--.+||..+.. +|..=+.++..|=||=.-..|.-.+|+|+-..=.|=.++--.- +---+.| +.
T Consensus 424 d~~Iv~G~k~Gel~vfdlaS~~-l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~--~~gt~~k~lsl~ 500 (888)
T KOG0306|consen 424 DRYIVLGTKNGELQVFDLASAS-LVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVS--VPGTQKKVLSLK 500 (888)
T ss_pred CceEEEeccCCceEEEEeehhh-hhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEec--cCcccceeeeec
Confidence 4466777788888889887664 5666668999999999999999999988654333322221110 0000000 00
Q ss_pred -CCCcceeecccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeee
Q 016020 175 -SGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVP 251 (396)
Q Consensus 175 -~~~~LF~~~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~ip 251 (396)
....=++.+.|. |++.| +||-||-+.-|++.+||-|-+.++-.++-+ --|.+|.|||++-|++..++ +..
T Consensus 501 ~~rtLel~ddvL~----v~~Sp-dgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSA--DKn 573 (888)
T KOG0306|consen 501 HTRTLELEDDVLC----VSVSP-DGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSA--DKN 573 (888)
T ss_pred cceEEeccccEEE----EEEcC-CCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccC--CCc
Confidence 011233444443 67777 899999999999999999999999999998 88999999999999999999 788
Q ss_pred eEEEEeecCcEEEEEEeecccCCccchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEE
Q 016020 252 LKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTF 331 (396)
Q Consensus 252 lkIl~IetG~~l~s~~~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTf 331 (396)
+|||++.=|.+=++|- +|.+..-..-|+|...+|+|-
T Consensus 574 VKiWGLdFGDCHKS~f-------------------------------------------AHdDSvm~V~F~P~~~~FFt~ 610 (888)
T KOG0306|consen 574 VKIWGLDFGDCHKSFF-------------------------------------------AHDDSVMSVQFLPKTHLFFTC 610 (888)
T ss_pred eEEeccccchhhhhhh-------------------------------------------cccCceeEEEEcccceeEEEe
Confidence 8888888888888766 778888889999999999999
Q ss_pred Ec-CeEEEEeccc-ceeeeeccccc--cCCC-CCCCcEEEccCCcEEE
Q 016020 332 RN-RTVAVWNFRG-ELVTSFEDHLL--WHPD-CNTNNIYITSDQDLII 374 (396)
Q Consensus 332 s~-gti~iWd~~g-eL~t~fedh~l--~~~~-c~~n~~~it~~qd~ii 374 (396)
+. |.|+=||-.- +.+..++.|.+ |.+- -|++.+-+|+..|-=|
T Consensus 611 gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sI 658 (888)
T KOG0306|consen 611 GKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSI 658 (888)
T ss_pred cCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCcee
Confidence 87 9999999888 88889999976 4333 6677777777666444
No 58
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=98.22 E-value=6.8e-06 Score=84.60 Aligned_cols=218 Identities=15% Similarity=0.219 Sum_probs=158.7
Q ss_pred hhhhhccccceeeeccccceEE---EecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCC
Q 016020 101 VFALAHSGVCAAFSRETNRRIC---FLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGF 177 (396)
Q Consensus 101 i~~L~~sG~c~af~~~t~~~ic---~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~ 177 (396)
++.-++||- |..++| ..| +|+-.+|..||++=+..+...+|. .|..-.+|----...-++.=+-
T Consensus 111 Lltgs~SGE---FtLWNg-~~fnFEtilQaHDs~Vr~m~ws~~g~wmiS-----gD~gG~iKyWqpnmnnVk~~~a---- 177 (464)
T KOG0284|consen 111 LLTGSQSGE---FTLWNG-TSFNFETILQAHDSPVRTMKWSHNGTWMIS-----GDKGGMIKYWQPNMNNVKIIQA---- 177 (464)
T ss_pred eEeeccccc---EEEecC-ceeeHHHHhhhhcccceeEEEccCCCEEEE-----cCCCceEEecccchhhhHHhhH----
Confidence 344466665 444445 334 789999999999999999999887 3443444433222222211000
Q ss_pred cceeecccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEE
Q 016020 178 ALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKIL 255 (396)
Q Consensus 178 ~LF~~~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl 255 (396)
=.++.++- +-|.+ |.-.-+.++.|+++||||-..++..=.|++ =+|..+.+-|--=|++..+..+ ++|+|
T Consensus 178 --hh~eaIRd---lafSp-nDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDn--lVKlW 249 (464)
T KOG0284|consen 178 --HHAEAIRD---LAFSP-NDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDN--LVKLW 249 (464)
T ss_pred --hhhhhhhe---eccCC-CCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCc--eeEee
Confidence 01244442 45677 566666678899999999999998888887 8899999999999999999977 99999
Q ss_pred EeecCcEEEEEEeecccCCc---cchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEee-cCeEEEEE
Q 016020 256 SIEDGTVLKVFYHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLY-ENQLFLTF 331 (396)
Q Consensus 256 ~IetG~~l~s~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly-~~qLFLTf 331 (396)
|=-+|.++.++- +|..- +.|.. .+.+||...+|++++++|+++-|=+.+.++|.....+.-..| .-.||.|-
T Consensus 250 DprSg~cl~tlh---~HKntVl~~~f~~-n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsg 325 (464)
T KOG0284|consen 250 DPRSGSCLATLH---GHKNTVLAVKFNP-NGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSG 325 (464)
T ss_pred cCCCcchhhhhh---hccceEEEEEEcC-CCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeec
Confidence 999999999865 45443 78888 669999999999999999997666667787777776665544 23455555
Q ss_pred E-cCeEEEEeccc
Q 016020 332 R-NRTVAVWNFRG 343 (396)
Q Consensus 332 s-~gti~iWd~~g 343 (396)
- +|.|..|.+.+
T Consensus 326 g~Dgsvvh~~v~~ 338 (464)
T KOG0284|consen 326 GSDGSVVHWVVGL 338 (464)
T ss_pred cCCCceEEEeccc
Confidence 4 49999999986
No 59
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=98.20 E-value=4.1e-06 Score=86.22 Aligned_cols=180 Identities=15% Similarity=0.222 Sum_probs=127.4
Q ss_pred eEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEE
Q 016020 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFY 267 (396)
Q Consensus 190 fVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~ 267 (396)
-++||.. ++.+.+.++|+..++|+.-++..+=.+++ +.|.++++.-+..-.+...+ +..+|+||++.+.+.++.-
T Consensus 224 ~~d~d~~-~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~--DRtiK~WDl~k~~C~kt~l 300 (459)
T KOG0288|consen 224 SIDFDSD-NKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSA--DRTIKLWDLQKAYCSKTVL 300 (459)
T ss_pred eeeecCC-CceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccc--cchhhhhhhhhhheecccc
Confidence 4788884 55555567899999999999999988888 99999999988886677776 8999999999988877421
Q ss_pred --------------eec-ccCCccchhh----------------------hhcceeeEeecCCeeeEEEcccceEEEecc
Q 016020 268 --------------HLL-HRNKKVDFIE----------------------QFNEKLLVKQENENLQILDVRNAELMEVSR 310 (396)
Q Consensus 268 --------------~~L-~~sk~i~FiE----------------------~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~ 310 (396)
..= |--++|.|.. ..+--||.-..|.+|+++|+++.++..+..
T Consensus 301 ~~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~s 380 (459)
T KOG0288|consen 301 PGSQCNDIVCSISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFS 380 (459)
T ss_pred ccccccceEecceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEee
Confidence 000 1112244443 123345666788889999999988888655
Q ss_pred cccCC----CceEEEeecCeEEEEEEc-CeEEEEecccc-ee----eeecc-ccccCCCCCCCcEEEccCCcE
Q 016020 311 TEFMT----PSAFIFLYENQLFLTFRN-RTVAVWNFRGE-LV----TSFED-HLLWHPDCNTNNIYITSDQDL 372 (396)
Q Consensus 311 t~~~~----PsAFiFly~~qLFLTfs~-gti~iWd~~ge-L~----t~fed-h~l~~~~c~~n~~~it~~qd~ 372 (396)
+..+- -.+.+|+|++.+..+=|. |.|.||++.+. +. .+=+. .+....-|+.+..-+++|++-
T Consensus 381 A~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~ 453 (459)
T KOG0288|consen 381 AEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQK 453 (459)
T ss_pred ccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCc
Confidence 54332 467899999999999887 99999999983 22 22222 111112267777777777654
No 60
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=98.15 E-value=0.00032 Score=72.05 Aligned_cols=321 Identities=16% Similarity=0.196 Sum_probs=202.4
Q ss_pred CcccchhhhhhhhhhhcccCCccee--------ccchhHHhhcccc------eeee-eccCCCCCccccccccccccceE
Q 016020 28 SDGFVNSVKKLQRREICSKRDRAFS--------ISNAQERFRNMHL------VEEY-DTHDPKGHCPFVLPFLMKRTKVI 92 (396)
Q Consensus 28 ~~~~~nsvrKlqrREI~~~~~ra~s--------~~~~~e~frn~~l------~~~~-D~~d~~~~~~~~~~~l~~RS~V~ 92 (396)
+.+..+.|-||-+.|=+....+-|- .++-.|--+..++ .-|| .-+.|+... .+++ .--=|-
T Consensus 34 r~gLs~ivN~ll~se~~~~K~~pFDFLi~gelLRtsL~e~l~~kgiSsE~~leIEYv~~~~aP~pl---~~~~-hdDWVS 109 (423)
T KOG0313|consen 34 RYGLSNIVNKLLKSENGFWKPVPFDFLIKGELLRTSLDEHLEEKGISSEEILEIEYVEAITAPKPL---QCFL-HDDWVS 109 (423)
T ss_pred EccHHHHHHHHHhccCCcCCCCcceEEEcceeeeccHHHHHHHcCcChhheeEEEEEEecCCCCcc---cccc-chhhhh
Confidence 4567888889988887655555441 1333333333332 2223 445553322 1111 112233
Q ss_pred EEeeccchhhhhhccccceeeeccccceEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCC
Q 016020 93 EIVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGK 172 (396)
Q Consensus 93 EIv~a~dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk 172 (396)
-|=.|.+.|+-=++-|+.+.+|+. |+-+-.+=...+-+-...+++++..+--+|| +|-+ +.|.=-.+.-......-
T Consensus 110 sv~~~~~~IltgsYDg~~riWd~~-Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvs--as~D-qtl~Lw~~~~~~~~~~~ 185 (423)
T KOG0313|consen 110 SVKGASKWILTGSYDGTSRIWDLK-GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVS--ASMD-QTLRLWKWNVGENKVKA 185 (423)
T ss_pred hhcccCceEEEeecCCeeEEEecC-CceEEEEecCCcceeeeEEEecCCccceEEE--ecCC-ceEEEEEecCchhhhhH
Confidence 334456888889999999999976 8877777766666666889998777666643 4444 44444444322221100
Q ss_pred CCCCCcceeecccCCCCeEE---eeCCCCcEEEeecCCCeEEEEecc-------------------------CceEEEEe
Q 016020 173 PDSGFALFESESLKWPGFVE---FDDVNGKVLTYSAQDSIYKVFDLK-------------------------NYTMLYSI 224 (396)
Q Consensus 173 ~~~~~~LF~~~~l~~PgfVE---FDd~NgkIlt~~a~d~~YrVwdlk-------------------------nYs~lysI 224 (396)
. ...-.|-+-|| =+. .|-...+.+-|..+++|+-. .-+.+..+
T Consensus 186 ~--------~~~~GHk~~V~sVsv~~-sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl 256 (423)
T KOG0313|consen 186 L--------KVCRGHKRSVDSVSVDS-SGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTL 256 (423)
T ss_pred H--------hHhcccccceeEEEecC-CCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEe
Confidence 0 01114444444 333 45666667889999999911 12256677
Q ss_pred cc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCccchhhhhcceeeEeecCCeeeEEEccc
Q 016020 225 SD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN 302 (396)
Q Consensus 225 s~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~ 302 (396)
.+ +-|..|.++|..++.-..-. =.+|.||+++|+..-++.-. ..-..|+... ....|+.+.-|..|++||-++
T Consensus 257 ~GHt~~Vs~V~w~d~~v~yS~SwD---HTIk~WDletg~~~~~~~~~-ksl~~i~~~~-~~~Ll~~gssdr~irl~DPR~ 331 (423)
T KOG0313|consen 257 EGHTEPVSSVVWSDATVIYSVSWD---HTIKVWDLETGGLKSTLTTN-KSLNCISYSP-LSKLLASGSSDRHIRLWDPRT 331 (423)
T ss_pred cccccceeeEEEcCCCceEeeccc---ceEEEEEeecccceeeeecC-cceeEeeccc-ccceeeecCCCCceeecCCCC
Confidence 77 88999999986665444443 57899999999988765410 1112277777 778888899999999999998
Q ss_pred c--eEEE-ecccccCCCceEEEeecCeE-EEEEEc-CeEEEEecccc--eeeeeccc---cccCCCCCCCcEEEccCCc
Q 016020 303 A--ELME-VSRTEFMTPSAFIFLYENQL-FLTFRN-RTVAVWNFRGE--LVTSFEDH---LLWHPDCNTNNIYITSDQD 371 (396)
Q Consensus 303 ~--ki~~-v~~t~~~~PsAFiFly~~qL-FLTfs~-gti~iWd~~ge--L~t~fedh---~l~~~~c~~n~~~it~~qd 371 (396)
+ +... ..-+|..+.++.-..++++. |++.|. |++++||++.. -.-.+..| +|-+ +=++....+|..+|
T Consensus 332 ~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~v-dW~~~~~IvSGGaD 409 (423)
T KOG0313|consen 332 GDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSV-DWNEGGLIVSGGAD 409 (423)
T ss_pred CCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEE-eccCCceEEeccCc
Confidence 4 3333 66789999999999998765 788887 99999999993 34444444 3322 13445566666666
No 61
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=98.15 E-value=3.8e-05 Score=76.87 Aligned_cols=161 Identities=14% Similarity=0.205 Sum_probs=117.2
Q ss_pred cCCCCe---EEeeCCCCcEEEeecCCCeEEEEec----cCceEEEEeccCceEEEEEcCCeEEEEEecCCCeeeeEEEEe
Q 016020 185 LKWPGF---VEFDDVNGKVLTYSAQDSIYKVFDL----KNYTMLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSI 257 (396)
Q Consensus 185 l~~Pgf---VEFDd~NgkIlt~~a~d~~YrVwdl----knYs~lysIs~~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~I 257 (396)
..|+|= .+|++ +|--+|....|..+-+|+. +||--+. .-.-.|+|+++..+.-.++..++ +..+..||+
T Consensus 44 ~gh~geI~~~~F~P-~gs~~aSgG~Dr~I~LWnv~gdceN~~~lk-gHsgAVM~l~~~~d~s~i~S~gt--Dk~v~~wD~ 119 (338)
T KOG0265|consen 44 PGHKGEIYTIKFHP-DGSCFASGGSDRAIVLWNVYGDCENFWVLK-GHSGAVMELHGMRDGSHILSCGT--DKTVRGWDA 119 (338)
T ss_pred CCCcceEEEEEECC-CCCeEeecCCcceEEEEeccccccceeeec-cccceeEeeeeccCCCEEEEecC--CceEEEEec
Confidence 445554 58999 9999999999999999984 4444444 33389999999976666677777 789999999
Q ss_pred ecCcEEEEEEeecccCCccchhh--hhc-ceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecC-eEEEEEEc
Q 016020 258 EDGTVLKVFYHLLHRNKKVDFIE--QFN-EKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYEN-QLFLTFRN 333 (396)
Q Consensus 258 etG~~l~s~~~~L~~sk~i~FiE--~~~-ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~-qLFLTfs~ 333 (396)
|+|+..+.++ .|++-+.=+. ..| +-+-..|+|..+++||+++++.+++... ..+--||-|..++ |.+-.-=|
T Consensus 120 ~tG~~~rk~k---~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~-kyqltAv~f~d~s~qv~sggId 195 (338)
T KOG0265|consen 120 ETGKRIRKHK---GHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFEN-KYQLTAVGFKDTSDQVISGGID 195 (338)
T ss_pred ccceeeehhc---cccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcccc-ceeEEEEEecccccceeecccc
Confidence 9999999877 5555532221 123 3445688999999999999999987533 3456788887755 45555667
Q ss_pred CeEEEEeccc-ceeeeecccc
Q 016020 334 RTVAVWNFRG-ELVTSFEDHL 353 (396)
Q Consensus 334 gti~iWd~~g-eL~t~fedh~ 353 (396)
+.|++||.+- +..-.+++|.
T Consensus 196 n~ikvWd~r~~d~~~~lsGh~ 216 (338)
T KOG0265|consen 196 NDIKVWDLRKNDGLYTLSGHA 216 (338)
T ss_pred CceeeeccccCcceEEeeccc
Confidence 8999999955 3333445543
No 62
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.14 E-value=7.8e-06 Score=90.34 Aligned_cols=157 Identities=17% Similarity=0.254 Sum_probs=129.2
Q ss_pred eeecccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEe
Q 016020 180 FESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSI 257 (396)
Q Consensus 180 F~~~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~I 257 (396)
||+.+-+=-| +-|-+ .--++..+.+.|.++.||++=..+|=++.+ --|--|.|-|.-=|+++.+. +..+|+|+-
T Consensus 5 fEskSsRvKg-lsFHP-~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGD--DykIkVWnY 80 (1202)
T KOG0292|consen 5 FESKSSRVKG-LSFHP-KRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGD--DYKIKVWNY 80 (1202)
T ss_pred hhcccccccc-eecCC-CCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCC--ccEEEEEec
Confidence 5555444222 45666 455666688999999999999999988876 55888999999999899888 999999999
Q ss_pred ecCcEEEEEEeecccCCccchhhhhcce--eeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc-C
Q 016020 258 EDGTVLKVFYHLLHRNKKVDFIEQFNEK--LLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN-R 334 (396)
Q Consensus 258 etG~~l~s~~~~L~~sk~i~FiE~~~ek--LLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-g 334 (396)
.+-+++.++. +|--.|.=.--+.|| ||..++|+.|+|||..+++++.++.+|.--+-+.-|.|.-.|.++.|= -
T Consensus 81 k~rrclftL~---GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQ 157 (1202)
T KOG0292|consen 81 KTRRCLFTLL---GHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQ 157 (1202)
T ss_pred ccceehhhhc---cccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccc
Confidence 9999998766 554443222223444 899999999999999999999999999999999999999999999997 7
Q ss_pred eEEEEeccc
Q 016020 335 TVAVWNFRG 343 (396)
Q Consensus 335 ti~iWd~~g 343 (396)
||+|||..|
T Consensus 158 TVRVWDisG 166 (1202)
T KOG0292|consen 158 TVRVWDISG 166 (1202)
T ss_pred eEEEEeecc
Confidence 999999998
No 63
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=98.13 E-value=9.2e-05 Score=79.83 Aligned_cols=184 Identities=19% Similarity=0.242 Sum_probs=138.2
Q ss_pred CCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCC
Q 016020 197 NGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNK 274 (396)
Q Consensus 197 NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk 274 (396)
+||- =+..-++.+.-||+-+.+++|.++. -.+|.|.++|.--.+.-.-..+ -+.++++..|+..+... |.+.+
T Consensus 80 ~~RL-FS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddG--vl~~~s~~p~~I~~~r~--l~rq~ 154 (691)
T KOG2048|consen 80 GGRL-FSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDG--VLYDFSIGPDKITYKRS--LMRQK 154 (691)
T ss_pred CCeE-EeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCc--eEEEEecCCceEEEEee--ccccc
Confidence 5654 4455688999999999999999887 8899999998765444443433 78889999999888765 34543
Q ss_pred c----cchhhhhcceeeEeecCCeeeEEEcccceEEEe--------cccccCCCceEEEeecCeEEEEEEcCeEEEEecc
Q 016020 275 K----VDFIEQFNEKLLVKQENENLQILDVRNAELMEV--------SRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR 342 (396)
Q Consensus 275 ~----i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v--------~~t~~~~PsAFiFly~~qLFLTfs~gti~iWd~~ 342 (396)
. +.|-. .+-+|..+.+|+-|+|||+.++...++ ++.+.--.-+.+||.++++-=-=|-|+|++||..
T Consensus 155 sRvLslsw~~-~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~ 233 (691)
T KOG2048|consen 155 SRVLSLSWNP-TGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSI 233 (691)
T ss_pred ceEEEEEecC-CccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEccc
Confidence 2 78877 888999999999999999999877762 2223344557899999998777777999999998
Q ss_pred c-ceeeeeccccccCC----CCCCCcEEEccCCcEEEEeccCCCCCccc
Q 016020 343 G-ELVTSFEDHLLWHP----DCNTNNIYITSDQDLIISYCKAEPEDQWM 386 (396)
Q Consensus 343 g-eL~t~fedh~l~~~----~c~~n~~~it~~qd~ii~~~~~~~~~~~~ 386 (396)
- .|+-++.=|.-.+. +-+.|.+|++.=+-=||=|=-.....+|.
T Consensus 234 ~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv 282 (691)
T KOG2048|consen 234 FGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWV 282 (691)
T ss_pred CcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCcccee
Confidence 7 78888776665544 35667788887777777775544444453
No 64
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=98.08 E-value=1.4e-05 Score=79.91 Aligned_cols=125 Identities=13% Similarity=0.219 Sum_probs=95.9
Q ss_pred EEEEecc---CceEEEEEcC-CeEEEEEecCCCeeeeEEEEeec-CcEEEEEEeecccCCc---cchhhhhcceeeEeec
Q 016020 220 MLYSISD---KHVQEIKISP-GIMLLIFNRSSSHVPLKILSIED-GTVLKVFYHLLHRNKK---VDFIEQFNEKLLVKQE 291 (396)
Q Consensus 220 ~lysIs~---~~VqEIkiSp-g~~Ll~~q~~~~~iplkIl~Iet-G~~l~s~~~~L~~sk~---i~FiE~~~ekLLIKQe 291 (396)
.-|+|.. +-|++++||| .-.||...+= +-.++||++|+ |.... +-..-++++ +.+.+ .|.|.++..-
T Consensus 18 kd~ev~~pP~DsIS~l~FSP~~~~~~~A~SW--D~tVR~wevq~~g~~~~--ka~~~~~~PvL~v~Wsd-dgskVf~g~~ 92 (347)
T KOG0647|consen 18 KDYEVPNPPEDSISALAFSPQADNLLAAGSW--DGTVRIWEVQNSGQLVP--KAQQSHDGPVLDVCWSD-DGSKVFSGGC 92 (347)
T ss_pred cceecCCCcccchheeEeccccCceEEeccc--CCceEEEEEecCCcccc--hhhhccCCCeEEEEEcc-CCceEEeecc
Confidence 4455554 8899999999 3333334444 57889999999 34333 211133333 89999 9999999999
Q ss_pred CCeeeEEEcccceEEEecccccCCCceEEEeecCe--EEEEEEc-CeEEEEeccc-ceeeeec
Q 016020 292 NENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQ--LFLTFRN-RTVAVWNFRG-ELVTSFE 350 (396)
Q Consensus 292 d~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~q--LFLTfs~-gti~iWd~~g-eL~t~fe 350 (396)
|+.+++|||.+++...| ..|..+.+.-+|+.... +.+|=|+ -|+++||.+. ..+++++
T Consensus 93 Dk~~k~wDL~S~Q~~~v-~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~ 154 (347)
T KOG0647|consen 93 DKQAKLWDLASGQVSQV-AAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ 154 (347)
T ss_pred CCceEEEEccCCCeeee-eecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee
Confidence 99999999999999887 58999999999988766 7888888 7999999999 4666543
No 65
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=98.06 E-value=9.8e-06 Score=83.45 Aligned_cols=197 Identities=16% Similarity=0.209 Sum_probs=148.5
Q ss_pred cceEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcceeecccCCCCeEEeeCCC
Q 016020 118 NRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVN 197 (396)
Q Consensus 118 ~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF~~~~l~~PgfVEFDd~N 197 (396)
||--|-+| +| =.-..-+-||+. ..|-.|+--...++..|-|...- ++.+ --++... |
T Consensus 93 NKvkc~V~-----~v---~WtPeGRRLltg--s~SGEFtLWNg~~fnFEtilQaH----------Ds~V--r~m~ws~-~ 149 (464)
T KOG0284|consen 93 NKVKCPVN-----VV---RWTPEGRRLLTG--SQSGEFTLWNGTSFNFETILQAH----------DSPV--RTMKWSH-N 149 (464)
T ss_pred ccccccee-----eE---EEcCCCceeEee--cccccEEEecCceeeHHHHhhhh----------cccc--eeEEEcc-C
Confidence 77777666 33 355666788884 45556666666666666554421 1111 1356666 9
Q ss_pred CcEEEeecCCCeEEEEec--cCceEEEEeccCceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCc
Q 016020 198 GKVLTYSAQDSIYKVFDL--KNYTMLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKK 275 (396)
Q Consensus 198 gkIlt~~a~d~~YrVwdl--knYs~lysIs~~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~ 275 (396)
|.++.+..+++++|+|+. .|-+..|.=.+|.|.++++||.=.-++..+. +-.++|||-.-+++.--+. +|+-+
T Consensus 150 g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~Sd--Dg~ikiWdf~~~kee~vL~---GHgwd 224 (464)
T KOG0284|consen 150 GTWMISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSD--DGTIKIWDFRMPKEERVLR---GHGWD 224 (464)
T ss_pred CCEEEEcCCCceEEecccchhhhHHhhHhhhhhhheeccCCCCceeEEecC--CCeEEEEeccCCchhheec---cCCCC
Confidence 999999999999999974 4555555555699999999976554455554 6788999999888866554 55544
Q ss_pred ---cchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc-CeEEEEeccc
Q 016020 276 ---VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNFRG 343 (396)
Q Consensus 276 ---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~~g 343 (396)
+|.=+ .-..|.+..+|..+++||-++++++.++-.|..+.-+..|.++++..+|.|. -+++++|.+.
T Consensus 225 VksvdWHP-~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~ 295 (464)
T KOG0284|consen 225 VKSVDWHP-TKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRT 295 (464)
T ss_pred cceeccCC-ccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhH
Confidence 55555 4456788889999999999999999999999999999999999999999998 6999999994
No 66
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=98.05 E-value=6.1e-05 Score=76.80 Aligned_cols=243 Identities=17% Similarity=0.154 Sum_probs=154.0
Q ss_pred ccccceeeeccccceEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcceeeccc
Q 016020 106 HSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESL 185 (396)
Q Consensus 106 ~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF~~~~l 185 (396)
-+|.-.+|..-|+.-.|.|--.-+++.= ++.-. ...|. .+.+++ -++=|-.+|=+ +-..+|..-..
T Consensus 126 msG~v~v~~~stg~~~~~~~~e~~dieW-l~WHp--~a~il--lAG~~D-GsvWmw~ip~~--------~~~kv~~Gh~~ 191 (399)
T KOG0296|consen 126 MSGKVLVFKVSTGGEQWKLDQEVEDIEW-LKWHP--RAHIL--LAGSTD-GSVWMWQIPSQ--------ALCKVMSGHNS 191 (399)
T ss_pred CCccEEEEEcccCceEEEeecccCceEE-EEecc--cccEE--EeecCC-CcEEEEECCCc--------ceeeEecCCCC
Confidence 4666667776667666666544444443 33333 33344 444555 23444444321 01122222000
Q ss_pred CCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc---CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcE
Q 016020 186 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD---KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTV 262 (396)
Q Consensus 186 ~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~---~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~ 262 (396)
. =--=||=+. ||-+.--..|+++||||+|+.+.+..++. -....+.++-.--+++.... ..+.++.+.-+|+.
T Consensus 192 ~-ct~G~f~pd-GKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~--e~~~~~~~~~sgKV 267 (399)
T KOG0296|consen 192 P-CTCGEFIPD-GKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNS--EGVACGVNNGSGKV 267 (399)
T ss_pred C-cccccccCC-CceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccC--CccEEEEccccceE
Confidence 0 001144443 66665566699999999999999999995 34556666655555555555 68999999999999
Q ss_pred EEEEE----eecccC----Cccchhhhhccee---eEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEE
Q 016020 263 LKVFY----HLLHRN----KKVDFIEQFNEKL---LVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTF 331 (396)
Q Consensus 263 l~s~~----~~L~~s----k~i~FiE~~~ekL---LIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTf 331 (396)
+..++ ++.+.. ..|+|++ +..+| .++.=|+.|-|||+.+.++++.-.-+ ...--..|+++--||-.-
T Consensus 268 v~~~n~~~~~l~~~~e~~~esve~~~-~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he-~~V~~l~w~~t~~l~t~c 345 (399)
T KOG0296|consen 268 VNCNNGTVPELKPSQEELDESVESIP-SSSKLPLAACGSVDGTIAIYDLAASTLRHICEHE-DGVTKLKWLNTDYLLTAC 345 (399)
T ss_pred EEecCCCCccccccchhhhhhhhhcc-cccccchhhcccccceEEEEecccchhheeccCC-CceEEEEEcCcchheeec
Confidence 99877 121221 1288888 55555 45668999999999999988754433 335566788866666666
Q ss_pred EcCeEEEEeccc-ceeeeeccccccCCC---CCCCcEEEcc
Q 016020 332 RNRTVAVWNFRG-ELVTSFEDHLLWHPD---CNTNNIYITS 368 (396)
Q Consensus 332 s~gti~iWd~~g-eL~t~fedh~l~~~~---c~~n~~~it~ 368 (396)
.+|+|..||.+- +|+...-+|.--.++ .++.+..||.
T Consensus 346 ~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~ 386 (399)
T KOG0296|consen 346 ANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTV 386 (399)
T ss_pred cCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEe
Confidence 679999999987 999999999876665 4444444443
No 67
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=98.04 E-value=0.0016 Score=62.25 Aligned_cols=155 Identities=12% Similarity=0.152 Sum_probs=100.7
Q ss_pred CCCCeEEeeCCCCcEEEeecCCCeEEEEeccCc----eEEEEecc-CceEEEEEcCCe-EEEEEecCCCeeeeEEEEeec
Q 016020 186 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNY----TMLYSISD-KHVQEIKISPGI-MLLIFNRSSSHVPLKILSIED 259 (396)
Q Consensus 186 ~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknY----s~lysIs~-~~VqEIkiSpg~-~Ll~~q~~~~~iplkIl~Iet 259 (396)
.+|.++-||+.+..+.+.+..++.+.|||+.+. +.+..+.. .+...+.++|+- .|++..-. .-.+.+|++.+
T Consensus 80 ~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~--~~~v~v~d~~~ 157 (330)
T PRK11028 80 GSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLK--EDRIRLFTLSD 157 (330)
T ss_pred CCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCC--CCEEEEEEECC
Confidence 479999999855556666667999999999642 23344443 567888999754 55454443 34689999987
Q ss_pred CcEEEE-----EEeecccC-CccchhhhhcceeeEeec-CCeeeEEEcc--cceEEEe---c---cc--ccCCCceEEEe
Q 016020 260 GTVLKV-----FYHLLHRN-KKVDFIEQFNEKLLVKQE-NENLQILDVR--NAELMEV---S---RT--EFMTPSAFIFL 322 (396)
Q Consensus 260 G~~l~s-----~~~~L~~s-k~i~FiE~~~ekLLIKQe-d~~L~I~Dv~--~~ki~~v---~---~t--~~~~PsAFiFl 322 (396)
+..+.. .....+.. ..+.|.+ .+.++++-.+ ++.|.+||+. ++++..+ . .+ ..-+|.+..|.
T Consensus 158 ~g~l~~~~~~~~~~~~g~~p~~~~~~p-dg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~ 236 (330)
T PRK11028 158 DGHLVAQEPAEVTTVEGAGPRHMVFHP-NQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHIT 236 (330)
T ss_pred CCcccccCCCceecCCCCCCceEEECC-CCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEEC
Confidence 444321 11111111 1278886 8899988877 9999999997 3444221 1 11 11245568899
Q ss_pred ecCe-EEEEEEc-CeEEEEeccc
Q 016020 323 YENQ-LFLTFRN-RTVAVWNFRG 343 (396)
Q Consensus 323 y~~q-LFLTfs~-gti~iWd~~g 343 (396)
++++ ||++-+. ++|.+|+.+.
T Consensus 237 pdg~~lyv~~~~~~~I~v~~i~~ 259 (330)
T PRK11028 237 PDGRHLYACDRTASLISVFSVSE 259 (330)
T ss_pred CCCCEEEEecCCCCeEEEEEEeC
Confidence 9876 4555443 8999999854
No 68
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.03 E-value=0.00014 Score=71.34 Aligned_cols=208 Identities=15% Similarity=0.190 Sum_probs=146.3
Q ss_pred cceeeeccccceEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceee---eEeeehhhhhhCCCCCCCcceeeccc
Q 016020 109 VCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLK---CRSTKIEYIRRGKPDSGFALFESESL 185 (396)
Q Consensus 109 ~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~---cr~~~~~~i~~gk~~~~~~LF~~~~l 185 (396)
.|..||-.|||-+=-+ +.+.-.|-++=||. +|=|++| +|++ ++|+ ||+-+.|=|+- ++ -|.+..
T Consensus 82 ~v~vwDV~TGkv~Rr~-rgH~aqVNtV~fNe--esSVv~S--gsfD-~s~r~wDCRS~s~ePiQi--ld----ea~D~V- 148 (307)
T KOG0316|consen 82 AVQVWDVNTGKVDRRF-RGHLAQVNTVRFNE--ESSVVAS--GSFD-SSVRLWDCRSRSFEPIQI--LD----EAKDGV- 148 (307)
T ss_pred eEEEEEcccCeeeeec-ccccceeeEEEecC--cceEEEe--cccc-ceeEEEEcccCCCCccch--hh----hhcCce-
Confidence 5778999999876544 45666778888996 5666644 6777 5554 67665443322 00 011111
Q ss_pred CCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEeccCceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEE
Q 016020 186 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKV 265 (396)
Q Consensus 186 ~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s 265 (396)
--. ++++--+...+.|++||.|||+.+.+.----+.-|.++.+|++....+...- .-.++++|=+|||.|++
T Consensus 149 -----~Si-~v~~heIvaGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~l--~stlrLlDk~tGklL~s 220 (307)
T KOG0316|consen 149 -----SSI-DVAEHEIVAGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASSL--DSTLRLLDKETGKLLKS 220 (307)
T ss_pred -----eEE-EecccEEEeeccCCcEEEEEeecceeehhhcCCcceeEEecCCCCEEEEeec--cceeeecccchhHHHHH
Confidence 112 3456666668889999999999999876666699999999988777666655 45789999999999998
Q ss_pred EEeecccCCc----cchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCC-CceEEEeecCeEEEEEEcCeEEEEe
Q 016020 266 FYHLLHRNKK----VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMT-PSAFIFLYENQLFLTFRNRTVAVWN 340 (396)
Q Consensus 266 ~~~~L~~sk~----i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~-PsAFiFly~~qLFLTfs~gti~iWd 340 (396)
.+= |.+.+ +.|.+ ..+-.+...||+-+-.||+...+++--.+.+.-. .-..-|-|....|+|.-...+..|-
T Consensus 221 YkG--hkn~eykldc~l~q-sdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~~~~~~~ 297 (307)
T KOG0316|consen 221 YKG--HKNMEYKLDCCLNQ-SDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATGHGDLFWY 297 (307)
T ss_pred hcc--cccceeeeeeeecc-cceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecCCceecee
Confidence 771 33333 67666 7788899999999999999998877533333222 4455667778888888887777774
No 69
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=98.01 E-value=0.00012 Score=72.42 Aligned_cols=207 Identities=15% Similarity=0.173 Sum_probs=146.6
Q ss_pred eeeeccccceEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhhhh-CCCCCC-CcceeecccCCC
Q 016020 111 AAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRR-GKPDSG-FALFESESLKWP 188 (396)
Q Consensus 111 ~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~-gk~~~~-~~LF~~~~l~~P 188 (396)
.+||..||--+--+ .+.-+||++=+....+.|.|=+ .|-|.| =.++.. -|+. |.-.||
T Consensus 84 kvw~a~tgdelhsf--~hkhivk~~af~~ds~~lltgg----------------~ekllrvfdln~p~App~--E~~ght 143 (334)
T KOG0278|consen 84 KVWDAVTGDELHSF--EHKHIVKAVAFSQDSNYLLTGG----------------QEKLLRVFDLNRPKAPPK--EISGHT 143 (334)
T ss_pred hhhhhhhhhhhhhh--hhhheeeeEEecccchhhhccc----------------hHHHhhhhhccCCCCCch--hhcCCC
Confidence 35677777444322 2344888888888777777722 222322 111111 1333 455677
Q ss_pred Ce---EEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc-CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEE
Q 016020 189 GF---VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLK 264 (396)
Q Consensus 189 gf---VEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~-~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~ 264 (396)
|= |.||. ..+-+.+++.|+++|.||-++.+..-+|.= -.|....+|++=-+++..-. -.++-||+-+-+.||
T Consensus 144 g~Ir~v~wc~-eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~g---ssV~Fwdaksf~~lK 219 (334)
T KOG0278|consen 144 GGIRTVLWCH-EDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYG---SSVKFWDAKSFGLLK 219 (334)
T ss_pred CcceeEEEec-cCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEecC---ceeEEecccccccee
Confidence 64 68999 555556669999999999999999888875 67777777744333333322 357899999999999
Q ss_pred EEEeecccCCccchhhhhcceeeEeecCCeeeEEEcccceEEEe-cccccCCCceEEEeecCeEEEEEEc-CeEEEEecc
Q 016020 265 VFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEV-SRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNFR 342 (396)
Q Consensus 265 s~~~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v-~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~~ 342 (396)
+.+. +-+-.-.=++.-.+..+-+-||--+.-||--|++=+.- ..+|+-+.-+..|.|++++|-+=|. |||.+|...
T Consensus 220 s~k~--P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~ 297 (334)
T KOG0278|consen 220 SYKM--PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTT 297 (334)
T ss_pred eccC--ccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEec
Confidence 8772 22222233444557777888999999999999988886 6999999999999999999999887 999999876
Q ss_pred c
Q 016020 343 G 343 (396)
Q Consensus 343 g 343 (396)
.
T Consensus 298 ~ 298 (334)
T KOG0278|consen 298 P 298 (334)
T ss_pred C
Confidence 5
No 70
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.00 E-value=5.5e-05 Score=76.18 Aligned_cols=187 Identities=18% Similarity=0.221 Sum_probs=141.7
Q ss_pred EEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCc-c
Q 016020 200 VLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKK-V 276 (396)
Q Consensus 200 Ilt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~-i 276 (396)
.|.+.+.|+.+.+||.+.+.++.++.+ -.|.+|.|-|.--|++.-.. +-.|..|++-+|+.-+-++ |.+... |
T Consensus 99 hLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~--D~~lr~WNLV~Gr~a~v~~--L~~~at~v 174 (362)
T KOG0294|consen 99 HLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGG--DQVLRTWNLVRGRVAFVLN--LKNKATLV 174 (362)
T ss_pred heeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcC--CceeeeehhhcCccceeec--cCCcceee
Confidence 788899999999999999999999988 55999999999999888877 8899999999999877666 333333 8
Q ss_pred chhhhhcc-eeeEeecCCeeeEEEcccceEEEecccccCC--CceEEEeecCeEEEEEEcCeEEEEeccc-ceeeeeccc
Q 016020 277 DFIEQFNE-KLLVKQENENLQILDVRNAELMEVSRTEFMT--PSAFIFLYENQLFLTFRNRTVAVWNFRG-ELVTSFEDH 352 (396)
Q Consensus 277 ~FiE~~~e-kLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~--PsAFiFly~~qLFLTfs~gti~iWd~~g-eL~t~fedh 352 (396)
.|++ .|+ +.++.|. -|-||-+.+.++. .+.-|+ +.+..|++.+.|++--.|+.|.+||.+. ...+.|..|
T Consensus 175 ~w~~-~Gd~F~v~~~~--~i~i~q~d~A~v~---~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH 248 (362)
T KOG0294|consen 175 SWSP-QGDHFVVSGRN--KIDIYQLDNASVF---REIENPKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAH 248 (362)
T ss_pred EEcC-CCCEEEEEecc--EEEEEecccHhHh---hhhhccccceeeeecCCceEEEecCCceEEEeccCCCccceeeecc
Confidence 9996 666 4444443 3566766665544 444455 8899999999999999999999999996 466666666
Q ss_pred cccCCC--CC---CCcEEEccCCcEEEEeccCCCC-----CccccCC-CcceeeC
Q 016020 353 LLWHPD--CN---TNNIYITSDQDLIISYCKAEPE-----DQWMEGS-GNSFTCL 396 (396)
Q Consensus 353 ~l~~~~--c~---~n~~~it~~qd~ii~~~~~~~~-----~~~~~~~-~~~~~~~ 396 (396)
--=+-+ .+ +..+.+|+.-|=+|.--+-+-+ .+..|-| +..+|||
T Consensus 249 ~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~~~RltCl 303 (362)
T KOG0294|consen 249 ENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKKRPTLLAELNTNVRLTCL 303 (362)
T ss_pred hhheeeeEEEecCCceEEEEeccCceEEEEEccccccCCcceeEEeecCCcccee
Confidence 433322 23 3378889988988888777655 3444444 3456775
No 71
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.00 E-value=0.00014 Score=80.76 Aligned_cols=99 Identities=11% Similarity=0.226 Sum_probs=82.4
Q ss_pred CCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCC
Q 016020 197 NGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNK 274 (396)
Q Consensus 197 NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk 274 (396)
.+-+-.+...|-.+|||++++-.++|++.+ +-|--+-|-+.-=-+++.+. +-.++||+-|+++++.-+. +|+-
T Consensus 62 ~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASD--DQTIrIWNwqsr~~iavlt---GHnH 136 (1202)
T KOG0292|consen 62 TQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASD--DQTIRIWNWQSRKCIAVLT---GHNH 136 (1202)
T ss_pred CCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccC--CCeEEEEeccCCceEEEEe---cCce
Confidence 344445556789999999999999999998 77888888877766677666 7889999999999999888 8877
Q ss_pred c---cchhhhhcceeeEeecCCeeeEEEcc
Q 016020 275 K---VDFIEQFNEKLLVKQENENLQILDVR 301 (396)
Q Consensus 275 ~---i~FiE~~~ekLLIKQed~~L~I~Dv~ 301 (396)
. -||.+ ..+.|+..+=|+.+++||+.
T Consensus 137 YVMcAqFhp-tEDlIVSaSLDQTVRVWDis 165 (1202)
T KOG0292|consen 137 YVMCAQFHP-TEDLIVSASLDQTVRVWDIS 165 (1202)
T ss_pred EEEeeccCC-ccceEEEecccceEEEEeec
Confidence 7 47777 78888999999999999974
No 72
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=97.96 E-value=0.00018 Score=75.39 Aligned_cols=230 Identities=15% Similarity=0.182 Sum_probs=158.1
Q ss_pred hhhhhhccccceeeeccccceEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcc
Q 016020 100 IVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFAL 179 (396)
Q Consensus 100 ii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~L 179 (396)
.++.-.+.|..+.|+ .+|.++-.|+.-..-|.+ |=.|+.-.-|+..+ .|+ +|-+=+-..|.-..-+++
T Consensus 249 ~LatG~~~G~~riw~-~~G~l~~tl~~HkgPI~s-lKWnk~G~yilS~~---vD~-------ttilwd~~~g~~~q~f~~ 316 (524)
T KOG0273|consen 249 LLATGSEDGEARIWN-KDGNLISTLGQHKGPIFS-LKWNKKGTYILSGG---VDG-------TTILWDAHTGTVKQQFEF 316 (524)
T ss_pred eEEEeecCcEEEEEe-cCchhhhhhhccCCceEE-EEEcCCCCEEEecc---CCc-------cEEEEeccCceEEEeeee
Confidence 344455666777775 556677666665555443 66776544344322 222 111111111111111111
Q ss_pred eeec--ccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEE
Q 016020 180 FESE--SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKIL 255 (396)
Q Consensus 180 F~~~--~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl 255 (396)
=++. -+.|-++.| .+.++.|++++|.-+---....++.+ ..|--||+.|-.+||++.+. ++.||||
T Consensus 317 ~s~~~lDVdW~~~~~--------F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~Sd--D~TlkiW 386 (524)
T KOG0273|consen 317 HSAPALDVDWQSNDE--------FATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSD--DGTLKIW 386 (524)
T ss_pred ccCCccceEEecCce--------EeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecC--CCeeEee
Confidence 1111 122333322 35678899999988887777888777 88999999999999888877 9999999
Q ss_pred EeecCcEEEEEE--------eecccCCccchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeE
Q 016020 256 SIEDGTVLKVFY--------HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQL 327 (396)
Q Consensus 256 ~IetG~~l~s~~--------~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qL 327 (396)
+.-++.....+. ..--++.++.=.+-.|.-|+.-..|+.++.||+.++..+++.-.|..++++.-|++++.+
T Consensus 387 s~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~y 466 (524)
T KOG0273|consen 387 SMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRY 466 (524)
T ss_pred ecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcE
Confidence 987765555444 001333667777778999999999999999999999999999999999999999999999
Q ss_pred EEEEEc-CeEEEEeccc-ceeeeecc
Q 016020 328 FLTFRN-RTVAVWNFRG-ELVTSFED 351 (396)
Q Consensus 328 FLTfs~-gti~iWd~~g-eL~t~fed 351 (396)
..+=+= |-|-||+.+- +|+.+.-+
T Consensus 467 lAsGs~dg~V~iws~~~~~l~~s~~~ 492 (524)
T KOG0273|consen 467 LASGSLDGCVHIWSTKTGKLVKSYQG 492 (524)
T ss_pred EEecCCCCeeEeccccchheeEeecC
Confidence 888665 8999999997 78876544
No 73
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.94 E-value=0.00042 Score=72.58 Aligned_cols=184 Identities=13% Similarity=0.161 Sum_probs=141.8
Q ss_pred CeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCC--eEEEEEecCCCeeeeEEEEeecC-cEE
Q 016020 189 GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPG--IMLLIFNRSSSHVPLKILSIEDG-TVL 263 (396)
Q Consensus 189 gfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg--~~Ll~~q~~~~~iplkIl~IetG-~~l 263 (396)
-++.|++.-+.++.+.+.|+..|+||+-+-.-.+.|++ +-|-...++|. +|+ ++.+= +..+++||+-+- .+.
T Consensus 114 ~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hiv-vtGsY--Dg~vrl~DtR~~~~~v 190 (487)
T KOG0310|consen 114 HVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIV-VTGSY--DGKVRLWDTRSLTSRV 190 (487)
T ss_pred eEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEE-EecCC--CceEEEEEeccCCcee
Confidence 37889998999999999999999999998887889999 88999999987 443 44444 689999999886 888
Q ss_pred EEEEeecccCCccchhhhhcceeeEeecCCeeeEEEcccceEEEecc-cccCCCceEEEeecCeEEEEEEc-CeEEEEec
Q 016020 264 KVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSR-TEFMTPSAFIFLYENQLFLTFRN-RTVAVWNF 341 (396)
Q Consensus 264 ~s~~~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~-t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~ 341 (396)
++++|-.+ =..|-|++ ++.+++-.-|.++++||+-+|-..-+.. .|.-+..+..+.-+++-.|+-+= |.|++||+
T Consensus 191 ~elnhg~p-Ve~vl~lp--sgs~iasAgGn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~ 267 (487)
T KOG0310|consen 191 VELNHGCP-VESVLALP--SGSLIASAGGNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDT 267 (487)
T ss_pred EEecCCCc-eeeEEEcC--CCCEEEEcCCCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEc
Confidence 89986422 23466666 6678888899999999999654444333 38889999999988888888875 99999995
Q ss_pred cc-ceee--eeccccccCCCCCCCcEEEccCCcEEEEecc
Q 016020 342 RG-ELVT--SFEDHLLWHPDCNTNNIYITSDQDLIISYCK 378 (396)
Q Consensus 342 ~g-eL~t--~fedh~l~~~~c~~n~~~it~~qd~ii~~~~ 378 (396)
.- ..+- .+-.-+|.-.-.++|..-+..=.|.++++=+
T Consensus 268 t~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnGlv~~rr 307 (487)
T KOG0310|consen 268 TNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNGLVSIRR 307 (487)
T ss_pred cceEEEEeeecccceeeEEecCCCceEEEecccceeeeeh
Confidence 54 4554 3444444444467777777777777777763
No 74
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=97.91 E-value=0.00083 Score=74.67 Aligned_cols=237 Identities=18% Similarity=0.272 Sum_probs=159.5
Q ss_pred ccce-eeeccccceEEEecCCCCceEEEEeeecCCC-----eEE----EEEeEecCCCceeeeEeeehhhhhhCCCCCCC
Q 016020 108 GVCA-AFSRETNRRICFLNVSPDEVIRSLFYNKNND-----SLI----TVSVYASDNFSSLKCRSTKIEYIRRGKPDSGF 177 (396)
Q Consensus 108 G~c~-af~~~t~~~ic~lN~s~~evIrsifyN~~n~-----slI----~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~ 177 (396)
|+|. +|++ .|++||.-+...+ || + ++.+++ ++= .|+.++-. ++.=|-.+....+.+-+.+++.
T Consensus 15 G~t~i~~d~-~gefi~tcgsdg~--ir-~-~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 15 GLTLICYDP-DGEFICTCGSDGD--IR-K-WKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred ceEEEEEcC-CCCEEEEecCCCc--eE-E-eecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCC
Confidence 4444 3543 3788888776554 43 1 244444 121 22233322 2344555555666666665554
Q ss_pred c--ceeecccCCCC-eEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeee
Q 016020 178 A--LFESESLKWPG-FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPL 252 (396)
Q Consensus 178 ~--LF~~~~l~~Pg-fVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~ipl 252 (396)
+ +-.. +.-|- =+-|+. +|+.+|+.+.|-.+||=++.|-+...++-+ ..|..+.+.|.-.+|..... ...+
T Consensus 88 ~~~iL~R--ftlp~r~~~v~g-~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~--dG~v 162 (933)
T KOG1274|consen 88 EDTILAR--FTLPIRDLAVSG-SGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSC--DGKV 162 (933)
T ss_pred ccceeee--eeccceEEEEec-CCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEec--CceE
Confidence 2 1111 11121 255666 999999999999999999999999998887 88999999998888887777 6889
Q ss_pred EEEEeecCcEEEEEEeecccCCc--------cchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCC--ceEEEe
Q 016020 253 KILSIEDGTVLKVFYHLLHRNKK--------VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTP--SAFIFL 322 (396)
Q Consensus 253 kIl~IetG~~l~s~~~~L~~sk~--------i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~P--sAFiFl 322 (396)
.||++++|+..+.+.-..+.+.. +.|-+ .|..+++---++.+++|+..+.+....+++..... +..-|.
T Consensus 163 ~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~P-k~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~ws 241 (933)
T KOG1274|consen 163 QIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHP-KGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWS 241 (933)
T ss_pred EEEEcccchhhhhcccCCccccccccceeeeeeecC-CCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEc
Confidence 99999999999987733233221 34445 66677777788899999999999988887766554 334466
Q ss_pred ecCeEEEEEEc--CeEEEEeccc-------ceeeeeccccccCCCCCCC
Q 016020 323 YENQLFLTFRN--RTVAVWNFRG-------ELVTSFEDHLLWHPDCNTN 362 (396)
Q Consensus 323 y~~qLFLTfs~--gti~iWd~~g-------eL~t~fedh~l~~~~c~~n 362 (396)
|.|+ |++.+. |.|.|||.+. ..|+- +-|+|+||-=
T Consensus 242 PnG~-YiAAs~~~g~I~vWnv~t~~~~~~~~~Vc~----~aw~p~~n~i 285 (933)
T KOG1274|consen 242 PNGK-YIAASTLDGQILVWNVDTHERHEFKRAVCC----EAWKPNANAI 285 (933)
T ss_pred CCCc-EEeeeccCCcEEEEecccchhccccceeEE----EecCCCCCee
Confidence 7744 555555 9999999994 23332 4699998753
No 75
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=97.87 E-value=0.00034 Score=74.28 Aligned_cols=239 Identities=18% Similarity=0.209 Sum_probs=158.1
Q ss_pred EecCCCCceEEEEeeecCCCeEEEEEe------EecCCCceeeeEeee--hhhhhhCCCCCCCcceeecccCCCCeEEee
Q 016020 123 FLNVSPDEVIRSLFYNKNNDSLITVSV------YASDNFSSLKCRSTK--IEYIRRGKPDSGFALFESESLKWPGFVEFD 194 (396)
Q Consensus 123 ~lN~s~~evIrsifyN~~n~slI~vSv------~~sd~~s~L~cr~~~--~~~i~~gk~~~~~~LF~~~~l~~PgfVEFD 194 (396)
.|-|+..-+|+|+=|.-..+.|..||- +--|.|.-+.|---. |.++.. -+|-.-.-+ -.+|-
T Consensus 208 ~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~n---TKGHia~lt-------~g~wh 277 (641)
T KOG0772|consen 208 QLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYN---TKGHIAELT-------CGCWH 277 (641)
T ss_pred ccCcccccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhc---cCCceeeee-------ccccc
Confidence 356677779999999999999999873 445666666554332 333322 122211111 23555
Q ss_pred CCCCcEEEeecCCCeEEEEeccCce-EEEEecc-------CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEE-
Q 016020 195 DVNGKVLTYSAQDSIYKVFDLKNYT-MLYSISD-------KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKV- 265 (396)
Q Consensus 195 d~NgkIlt~~a~d~~YrVwdlknYs-~lysIs~-------~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s- 265 (396)
+-|..+...++.|++.|+||+.+.+ ++-.|.. ..++.-.|+++--++...= .+..+-||+. |...+.
T Consensus 278 P~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc--~DGSIQ~W~~--~~~~v~p 353 (641)
T KOG0772|consen 278 PDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGC--LDGSIQIWDK--GSRTVRP 353 (641)
T ss_pred cCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcc--cCCceeeeec--CCccccc
Confidence 6677777778999999999999988 5555543 5677778887766633322 3688899987 444432
Q ss_pred -EEeecccCC-----ccchhhhhcceeeEeecCCeeeEEEccc-ceEEEe---cccccCCCceEEEeecCeEEEEEEc--
Q 016020 266 -FYHLLHRNK-----KVDFIEQFNEKLLVKQENENLQILDVRN-AELMEV---SRTEFMTPSAFIFLYENQLFLTFRN-- 333 (396)
Q Consensus 266 -~~~~L~~sk-----~i~FiE~~~ekLLIKQed~~L~I~Dv~~-~ki~~v---~~t~~~~PsAFiFly~~qLFLTfs~-- 333 (396)
+...-+|+. -|-|.. +|.+||...+|..|++|||++ +|.+.+ +.+. ++-.--.|+|+.+|.||=.+
T Consensus 354 ~~~vk~AH~~g~~Itsi~FS~-dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~-~~~tdc~FSPd~kli~TGtS~~ 431 (641)
T KOG0772|consen 354 VMKVKDAHLPGQDITSISFSY-DGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTP-FPGTDCCFSPDDKLILTGTSAP 431 (641)
T ss_pred ceEeeeccCCCCceeEEEecc-ccchhhhccCCCceeeeeccccccchhhhcCCCcc-CCCCccccCCCceEEEeccccc
Confidence 334445555 288988 999999999999999999999 455543 2222 22233589999999998653
Q ss_pred -----CeEEEEeccc-ceeeeec------cccccCCCCCCCcEEEccCCcEEEEeccC
Q 016020 334 -----RTVAVWNFRG-ELVTSFE------DHLLWHPDCNTNNIYITSDQDLIISYCKA 379 (396)
Q Consensus 334 -----gti~iWd~~g-eL~t~fe------dh~l~~~~c~~n~~~it~~qd~ii~~~~~ 379 (396)
|+.-++|..- ++|..+. -..+|||- -|.||++...-.+=+|+..
T Consensus 432 ~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~Whpk--LNQi~~gsgdG~~~vyYdp 487 (641)
T KOG0772|consen 432 NGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPK--LNQIFAGSGDGTAHVYYDP 487 (641)
T ss_pred CCCCCceEEEEeccceeeEEEecCCCceEEEEeecch--hhheeeecCCCceEEEECc
Confidence 5677888777 6665433 25689875 3456665555555556543
No 76
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=97.84 E-value=0.00018 Score=72.17 Aligned_cols=147 Identities=15% Similarity=0.193 Sum_probs=104.9
Q ss_pred eEEeeCCCCcEEEeecCCCeEEEEeccCc-----eEEEEeccCceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEE
Q 016020 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNY-----TMLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLK 264 (396)
Q Consensus 190 fVEFDd~NgkIlt~~a~d~~YrVwdlknY-----s~lysIs~~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~ 264 (396)
=++|.+.-+-.+++++=|+++|+|++.+- +-++++. .-|.++.||++--..+.... +..+|+|||++|+...
T Consensus 32 ~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~-~PvL~v~WsddgskVf~g~~--Dk~~k~wDL~S~Q~~~ 108 (347)
T KOG0647|consen 32 ALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHD-GPVLDVCWSDDGSKVFSGGC--DKQAKLWDLASGQVSQ 108 (347)
T ss_pred eeEeccccCceEEecccCCceEEEEEecCCcccchhhhccC-CCeEEEEEccCCceEEeecc--CCceEEEEccCCCeee
Confidence 47888877777778899999999999983 2344444 67999999977776676666 7899999999998776
Q ss_pred EEEeecccCCccchhhhhc-ceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeE-EEEEEcCeEEEEecc
Q 016020 265 VFYHLLHRNKKVDFIEQFN-EKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQL-FLTFRNRTVAVWNFR 342 (396)
Q Consensus 265 s~~~~L~~sk~i~FiE~~~-ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qL-FLTfs~gti~iWd~~ 342 (396)
-.-|. +.-+-+.|++-.+ +.|+.+.=|+.|+-||.+..+.+-+ ...+-+.+-.--...+ -+.-.++.|.+|+++
T Consensus 109 v~~Hd-~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t---~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~ 184 (347)
T KOG0647|consen 109 VAAHD-APVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVAT---LQLPERVYAADVLYPMAVVATAERHIAVYNLE 184 (347)
T ss_pred eeecc-cceeEEEEecCCCcceeEecccccceeecccCCCCeeee---eeccceeeehhccCceeEEEecCCcEEEEEcC
Confidence 55443 3334478888776 7889999999999999998776642 1122233333222333 344455788888885
Q ss_pred c
Q 016020 343 G 343 (396)
Q Consensus 343 g 343 (396)
+
T Consensus 185 n 185 (347)
T KOG0647|consen 185 N 185 (347)
T ss_pred C
Confidence 4
No 77
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.84 E-value=0.00026 Score=71.51 Aligned_cols=191 Identities=13% Similarity=0.179 Sum_probs=138.6
Q ss_pred CCCCCCCc----ceeecccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCe---EEE
Q 016020 171 GKPDSGFA----LFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGI---MLL 241 (396)
Q Consensus 171 gk~~~~~~----LF~~~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~---~Ll 241 (396)
|-.++.+| ||.-. .|-|-+.==.|+|+.+|+.+.|.+++++||+.-+++=.+.+ .-|...++.+.. .|
T Consensus 24 ~~~~s~~~~l~~lF~~~--aH~~sitavAVs~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shL- 100 (362)
T KOG0294|consen 24 GCTDSVKPTLKPLFAFS--AHAGSITALAVSGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHL- 100 (362)
T ss_pred ccccccceeeecccccc--ccccceeEEEecceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhhe-
Confidence 34444554 55532 35555666678999999999999999999999998887776 788899998776 44
Q ss_pred EEecCCCeeeeEEEEeecCcEEEEEEeecccCCccchhhhh--cceeeEeecCCeeeEEEcccceEEEecccccCCCceE
Q 016020 242 IFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQF--NEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAF 319 (396)
Q Consensus 242 ~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~i~FiE~~--~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAF 319 (396)
++... +.-+.||++-.-+.+++++ +|++.|.++..+ |.--|.=-.|+.|+.||+.+|+--.+.+=.. -+...
T Consensus 101 lS~sd--DG~i~iw~~~~W~~~~slK---~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~-~at~v 174 (362)
T KOG0294|consen 101 LSGSD--DGHIIIWRVGSWELLKSLK---AHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKN-KATLV 174 (362)
T ss_pred eeecC--CCcEEEEEcCCeEEeeeec---ccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCC-cceee
Confidence 34333 6788999999999999999 777777777543 4444556699999999999988766544332 34458
Q ss_pred EEeecCeEEEEEEcCeEEEEecccc-eee--eeccccccCCCCCCCcEEEccCC
Q 016020 320 IFLYENQLFLTFRNRTVAVWNFRGE-LVT--SFEDHLLWHPDCNTNNIYITSDQ 370 (396)
Q Consensus 320 iFly~~qLFLTfs~gti~iWd~~ge-L~t--~fedh~l~~~~c~~n~~~it~~q 370 (396)
.|++.+.-|+...-+.|.||.++.. +-. .++...+-++.=+.+.+++..|.
T Consensus 175 ~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~ 228 (362)
T KOG0294|consen 175 SWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFLDGSELLVGGDN 228 (362)
T ss_pred EEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeecCCceEEEecCC
Confidence 9999999999999999999999884 333 33333444444444444444443
No 78
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.83 E-value=2.6e-05 Score=84.64 Aligned_cols=175 Identities=15% Similarity=0.212 Sum_probs=119.2
Q ss_pred eEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEE
Q 016020 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFY 267 (396)
Q Consensus 190 fVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~ 267 (396)
-+.||. .++.|++.++++++|||||+.-+-+-.+.+ .++..+.|.|-.-.. .+-..+--++|||+-.-.+.+.++
T Consensus 75 Sl~f~~-~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~--a~gStdtd~~iwD~Rk~Gc~~~~~ 151 (825)
T KOG0267|consen 75 SLTFDT-SERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFF--ASGSTDTDLKIWDIRKKGCSHTYK 151 (825)
T ss_pred eeecCc-chhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEe--ccccccccceehhhhccCceeeec
Confidence 355666 678899999999999999998886667766 777788888877654 333347789999999888888877
Q ss_pred eecccCCc---cchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEE-EcCeEEEEeccc
Q 016020 268 HLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTF-RNRTVAVWNFRG 343 (396)
Q Consensus 268 ~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTf-s~gti~iWd~~g 343 (396)
.|..- +.|.+ .|-++..+-||+.++|||+.-|++.+.=++|--..-+.=|-+..-|.=+- +++++.+||+.-
T Consensus 152 ---s~~~vv~~l~lsP-~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dlet 227 (825)
T KOG0267|consen 152 ---SHTRVVDVLRLSP-DGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLET 227 (825)
T ss_pred ---CCcceeEEEeecC-CCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccce
Confidence 23333 45545 89999999999999999999999985434332222121122222222222 359999999994
Q ss_pred -ceeeeeccccccC---CCCCCCcEEEccCCc
Q 016020 344 -ELVTSFEDHLLWH---PDCNTNNIYITSDQD 371 (396)
Q Consensus 344 -eL~t~fedh~l~~---~~c~~n~~~it~~qd 371 (396)
+++.+.+.-.--+ ..-++..++.+.+|+
T Consensus 228 fe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 228 FEVISSGKPETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred eEEeeccCCccCCceeeeecCCceeeecCchh
Confidence 7776665541111 114566666666664
No 79
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=97.83 E-value=4.5e-05 Score=79.71 Aligned_cols=146 Identities=21% Similarity=0.320 Sum_probs=119.2
Q ss_pred eEEEEecc--CceEEEEEcC-CeEEEEEecCCCeeeeEEEEeec-CcEEEEEEeecccCCc---cchhhhhcceeeEeec
Q 016020 219 TMLYSISD--KHVQEIKISP-GIMLLIFNRSSSHVPLKILSIED-GTVLKVFYHLLHRNKK---VDFIEQFNEKLLVKQE 291 (396)
Q Consensus 219 s~lysIs~--~~VqEIkiSp-g~~Ll~~q~~~~~iplkIl~Iet-G~~l~s~~~~L~~sk~---i~FiE~~~ekLLIKQe 291 (396)
+++...++ +.|..|+|.| ...||++.+- +..++||++-+ |+++.+|. +|++. +.|.+ .|..+|....
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gm--D~~vklW~vy~~~~~lrtf~---gH~k~Vrd~~~s~-~g~~fLS~sf 278 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGM--DGLVKLWNVYDDRRCLRTFK---GHRKPVRDASFNN-CGTSFLSASF 278 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCC--CceEEEEEEecCcceehhhh---cchhhhhhhhccc-cCCeeeeeec
Confidence 35555666 9999999999 8888888777 88999999988 88877777 77776 88988 9999999999
Q ss_pred CCeeeEEEcccceEEEecccccCCCceEEEeecC-eEEEE-EEcCeEEEEeccc-ceeeeeccccccCCC---CCCCcEE
Q 016020 292 NENLQILDVRNAELMEVSRTEFMTPSAFIFLYEN-QLFLT-FRNRTVAVWNFRG-ELVTSFEDHLLWHPD---CNTNNIY 365 (396)
Q Consensus 292 d~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~-qLFLT-fs~gti~iWd~~g-eL~t~fedh~l~~~~---c~~n~~~ 365 (396)
|..|++||+-||+++--- +....|.+.=|-+++ ++||+ -+++.|.-||.+. ++|...+.|+--... =++|.-|
T Consensus 279 D~~lKlwDtETG~~~~~f-~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rF 357 (503)
T KOG0282|consen 279 DRFLKLWDTETGQVLSRF-HLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRF 357 (503)
T ss_pred ceeeeeeccccceEEEEE-ecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceE
Confidence 999999999999987532 344567888888877 66665 5679999999998 788899999865444 6788889
Q ss_pred EccCCc
Q 016020 366 ITSDQD 371 (396)
Q Consensus 366 it~~qd 371 (396)
||+..|
T Consensus 358 issSDd 363 (503)
T KOG0282|consen 358 ISSSDD 363 (503)
T ss_pred eeeccC
Confidence 988766
No 80
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.79 E-value=0.0001 Score=72.87 Aligned_cols=156 Identities=16% Similarity=0.286 Sum_probs=118.0
Q ss_pred EEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeec-CcEEEEEE
Q 016020 191 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIED-GTVLKVFY 267 (396)
Q Consensus 191 VEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~Iet-G~~l~s~~ 267 (396)
|+...+++++...++=|+++|+||+.-..-+-...+ .-|-..++||.+-= ++..++++-.++|||+-. |+.+. +.
T Consensus 110 vdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~n-lfas~Sgd~~l~lwdvr~~gk~~~-i~ 187 (311)
T KOG0277|consen 110 VDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPN-LFASASGDGTLRLWDVRSPGKFMS-IE 187 (311)
T ss_pred eccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCC-eEEEccCCceEEEEEecCCCceeE-EE
Confidence 678899999999999999999999987775555555 66778899987764 345566789999999976 55544 43
Q ss_pred eecccCCc---cchhhhhcceee-EeecCCeeeEEEccc-ceEEEecccccCCCceEEEeecCeE-EEEEEc-CeEEEEe
Q 016020 268 HLLHRNKK---VDFIEQFNEKLL-VKQENENLQILDVRN-AELMEVSRTEFMTPSAFIFLYENQL-FLTFRN-RTVAVWN 340 (396)
Q Consensus 268 ~~L~~sk~---i~FiE~~~ekLL-IKQed~~L~I~Dv~~-~ki~~v~~t~~~~PsAFiFly~~qL-FLTfs~-gti~iWd 340 (396)
.|+.+ ++|.. +++++| .+.-|..+++|||++ +.-+-++.+|....+..-|+|...- .-+.|. =|+.|||
T Consensus 188 ---ah~~Eil~cdw~k-y~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~ 263 (311)
T KOG0277|consen 188 ---AHNSEILCCDWSK-YNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWD 263 (311)
T ss_pred ---eccceeEeecccc-cCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecc
Confidence 66666 89988 666655 566899999999999 4444566899999999999986554 555555 5999999
Q ss_pred ccc-c-eeeeeccc
Q 016020 341 FRG-E-LVTSFEDH 352 (396)
Q Consensus 341 ~~g-e-L~t~fedh 352 (396)
..- + ++..-+.|
T Consensus 264 ~~~~ds~~e~~~~H 277 (311)
T KOG0277|consen 264 PERQDSAIETVDHH 277 (311)
T ss_pred cccchhhhhhhhcc
Confidence 984 2 55555544
No 81
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.79 E-value=0.00039 Score=68.36 Aligned_cols=151 Identities=14% Similarity=0.182 Sum_probs=113.6
Q ss_pred EEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEe
Q 016020 191 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYH 268 (396)
Q Consensus 191 VEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~ 268 (396)
|.|.- .|.-...+..|.++|+|+-.-..+|.+-++ .+|.+...|.+--=+.+-+. +.-+.+||++||+.+..|.-
T Consensus 23 vryN~-dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~Gg--Dk~v~vwDV~TGkv~Rr~rg 99 (307)
T KOG0316|consen 23 VRYNV-DGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGG--DKAVQVWDVNTGKVDRRFRG 99 (307)
T ss_pred EEEcc-CCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCC--CceEEEEEcccCeeeeeccc
Confidence 44543 677777788999999999999999888777 89999998855543344433 78899999999999999994
Q ss_pred ecccCCccchhhhhcceeeEeecCCeeeEEEcccce--EEEecccccCCCceEEEeecCeEEEEEEcCeEEEEeccc-ce
Q 016020 269 LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE--LMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRG-EL 345 (396)
Q Consensus 269 ~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~k--i~~v~~t~~~~PsAFiFly~~qLFLTfs~gti~iWd~~g-eL 345 (396)
-+++-+-|+|.| ..+-++.+..|.++|+||++++. -+.+.++-.+..+..- +.+-++.--.-+|+++.||.+- ++
T Consensus 100 H~aqVNtV~fNe-esSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~-v~~heIvaGS~DGtvRtydiR~G~l 177 (307)
T KOG0316|consen 100 HLAQVNTVRFNE-ESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSID-VAEHEIVAGSVDGTVRTYDIRKGTL 177 (307)
T ss_pred ccceeeEEEecC-cceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEE-ecccEEEeeccCCcEEEEEeeccee
Confidence 345555599999 88899999999999999999854 4446666666655543 3444444444459999999875 44
Q ss_pred e
Q 016020 346 V 346 (396)
Q Consensus 346 ~ 346 (396)
.
T Consensus 178 ~ 178 (307)
T KOG0316|consen 178 S 178 (307)
T ss_pred e
Confidence 3
No 82
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=97.78 E-value=0.0019 Score=61.68 Aligned_cols=154 Identities=12% Similarity=0.215 Sum_probs=101.7
Q ss_pred cCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEE-------Ee-ccCceEEEEEcCC-eEEEEEecCCCeeeeEEE
Q 016020 185 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLY-------SI-SDKHVQEIKISPG-IMLLIFNRSSSHVPLKIL 255 (396)
Q Consensus 185 l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~ly-------sI-s~~~VqEIkiSpg-~~Ll~~q~~~~~iplkIl 255 (396)
..+|-.+-|++....+++.+..++.++|||+.+...+- .+ .+.....+.|+|+ -.|.+.... .-.+.+|
T Consensus 125 ~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~--~~~v~v~ 202 (330)
T PRK11028 125 LEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNEL--NSSVDVW 202 (330)
T ss_pred CCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecC--CCEEEEE
Confidence 35688888998555666889999999999998744332 22 2456678899976 344444433 4667888
Q ss_pred Eeec--CcE--EEEEEeecccC-------CccchhhhhcceeeEeec-CCeeeEEEcccc----eEEEecccccCCCceE
Q 016020 256 SIED--GTV--LKVFYHLLHRN-------KKVDFIEQFNEKLLVKQE-NENLQILDVRNA----ELMEVSRTEFMTPSAF 319 (396)
Q Consensus 256 ~Iet--G~~--l~s~~~~L~~s-------k~i~FiE~~~ekLLIKQe-d~~L~I~Dv~~~----ki~~v~~t~~~~PsAF 319 (396)
++.+ |+. +.++. .++.. ..+.|.+ .+.+|++-.+ +..|.+||+.+. +++..-.+. ..|+++
T Consensus 203 ~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~i~~~p-dg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~-~~p~~~ 279 (330)
T PRK11028 203 QLKDPHGEIECVQTLD-MMPADFSDTRWAADIHITP-DGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE-TQPRGF 279 (330)
T ss_pred EEeCCCCCEEEEEEEe-cCCCcCCCCccceeEEECC-CCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc-ccCCce
Confidence 8874 432 22222 11111 1366766 8899999865 678999999543 233333333 589999
Q ss_pred EEeecCe-EEEEEE-cCeEEEEeccc
Q 016020 320 IFLYENQ-LFLTFR-NRTVAVWNFRG 343 (396)
Q Consensus 320 iFly~~q-LFLTfs-~gti~iWd~~g 343 (396)
.|.++++ ||++-+ +++|.+|+.+.
T Consensus 280 ~~~~dg~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 280 NIDHSGKYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred EECCCCCEEEEEEccCCcEEEEEEcC
Confidence 9998875 566665 48999998864
No 83
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=97.74 E-value=0.00014 Score=73.66 Aligned_cols=177 Identities=15% Similarity=0.259 Sum_probs=124.5
Q ss_pred eeCCCCcEEEeecCCCeEEEEeccC-------------ce-----EEEEecc--CceEEEEEcCCeEEEEEecCCCeeee
Q 016020 193 FDDVNGKVLTYSAQDSIYKVFDLKN-------------YT-----MLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPL 252 (396)
Q Consensus 193 FDd~NgkIlt~~a~d~~YrVwdlkn-------------Ys-----~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~ipl 252 (396)
|.. .|-.+|-.+.|..+|++|.+- -. .+-.+-| ++|.++.|-|--.+|++... +..+
T Consensus 120 fs~-DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~sr--D~tv 196 (430)
T KOG0640|consen 120 FSP-DGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSR--DNTV 196 (430)
T ss_pred eCC-CCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccC--CCeE
Confidence 444 588888888999999999871 11 3445555 89999999999999999888 7788
Q ss_pred EEEEeecCcEEEEEEe--ecccCCccchhhhhcceeeEeecCCeeeEEEcccceEEEeccc---ccCCCceEEEeecCeE
Q 016020 253 KILSIEDGTVLKVFYH--LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRT---EFMTPSAFIFLYENQL 327 (396)
Q Consensus 253 kIl~IetG~~l~s~~~--~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t---~~~~PsAFiFly~~qL 327 (396)
|+||+..-..-+.|+. .-+.-..+-|-+ .||+||++-+-..+++|||.|-++.--.+. |....-...++.++.|
T Consensus 197 KlFDfsK~saKrA~K~~qd~~~vrsiSfHP-sGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~l 275 (430)
T KOG0640|consen 197 KLFDFSKTSAKRAFKVFQDTEPVRSISFHP-SGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSL 275 (430)
T ss_pred EEEecccHHHHHHHHHhhccceeeeEeecC-CCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccE
Confidence 9999876332222221 111122245555 899999999999999999999999975443 3444555677889999
Q ss_pred EEEEEc-CeEEEEeccc-ceeeeecccc-----ccCCCCCCCcEEEccCCcEE
Q 016020 328 FLTFRN-RTVAVWNFRG-ELVTSFEDHL-----LWHPDCNTNNIYITSDQDLI 373 (396)
Q Consensus 328 FLTfs~-gti~iWd~~g-eL~t~fedh~-----l~~~~c~~n~~~it~~qd~i 373 (396)
|+|-|. |-|++||==+ .-+++|+.-- -.+-+.-++++.+|+.-|-+
T Consensus 276 YvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~ 328 (430)
T KOG0640|consen 276 YVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDST 328 (430)
T ss_pred EEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcce
Confidence 999998 9999999655 4666665431 11223455666666655544
No 84
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.70 E-value=0.00068 Score=74.11 Aligned_cols=159 Identities=16% Similarity=0.219 Sum_probs=119.7
Q ss_pred cccCCCCeE---EeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc-CceEEEEEcCCeEEEEEecCCCeeeeEEEEee
Q 016020 183 ESLKWPGFV---EFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-KHVQEIKISPGIMLLIFNRSSSHVPLKILSIE 258 (396)
Q Consensus 183 ~~l~~PgfV---EFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~-~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~Ie 258 (396)
....||+|| +|-|++.+=-.+.+-|+-.|+|+..+-+-++--.- +=|.-+-++|+=...+-..- .....+++.+
T Consensus 404 ~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~--~G~C~fY~t~ 481 (712)
T KOG0283|consen 404 KVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTF--NGYCRFYDTE 481 (712)
T ss_pred eEEecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEe--ccEEEEEEcc
Confidence 345688885 79999999999999999999999888764332221 55666666665444333333 3566777777
Q ss_pred cCcEEEEEEeecccCCc--------cchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCc--eEEEeecCeEE
Q 016020 259 DGTVLKVFYHLLHRNKK--------VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPS--AFIFLYENQLF 328 (396)
Q Consensus 259 tG~~l~s~~~~L~~sk~--------i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~Ps--AFiFly~~qLF 328 (396)
+=+...++-..++++|+ +||.+...+.+|+-..|+.|||||.+..++++..++.-..-+ ..=|..+|+..
T Consensus 482 ~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~I 561 (712)
T KOG0283|consen 482 GLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHI 561 (712)
T ss_pred CCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEE
Confidence 77777777777776665 899999999999999999999999999999886664433322 33456699999
Q ss_pred EEEEc-CeEEEEeccc
Q 016020 329 LTFRN-RTVAVWNFRG 343 (396)
Q Consensus 329 LTfs~-gti~iWd~~g 343 (396)
++-|+ -.|-||+.++
T Consensus 562 Vs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 562 VSASEDSWVYIWKNDS 577 (712)
T ss_pred EEeecCceEEEEeCCC
Confidence 99998 6999999866
No 85
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=97.68 E-value=0.00038 Score=77.83 Aligned_cols=146 Identities=18% Similarity=0.265 Sum_probs=100.8
Q ss_pred eEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEeccCceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEee
Q 016020 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHL 269 (396)
Q Consensus 190 fVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~ 269 (396)
=|-|.+ ||+-+|+.+.|..+.||.... - +++.+.=..+.++++ |.-+....+
T Consensus 74 CVR~S~-dG~~lAsGSDD~~v~iW~~~~-~---------------~~~~~fgs~g~~~~v-----------E~wk~~~~l 125 (942)
T KOG0973|consen 74 CVRFSP-DGSYLASGSDDRLVMIWERAE-I---------------GSGTVFGSTGGAKNV-----------ESWKVVSIL 125 (942)
T ss_pred EEEECC-CCCeEeeccCcceEEEeeecc-c---------------CCccccccccccccc-----------ceeeEEEEE
Confidence 356888 999999999999999999874 1 122221111112111 111111222
Q ss_pred cccCCc---cchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc-CeEEEEeccc-c
Q 016020 270 LHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNFRG-E 344 (396)
Q Consensus 270 L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~~g-e 344 (396)
..|..+ +...+ .+.+|....-|+.+-|||..+.+++++.+.|--.|....|=|-|+.|-|-++ ++++||.+.- .
T Consensus 126 ~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~ 204 (942)
T KOG0973|consen 126 RGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWG 204 (942)
T ss_pred ecCCCccceeccCC-CccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccce
Confidence 244444 44444 6777788888999999999999999999999999999999999999999999 9999999654 2
Q ss_pred ---eee-eec--------cccccCCCCCCCcEEEc
Q 016020 345 ---LVT-SFE--------DHLLWHPDCNTNNIYIT 367 (396)
Q Consensus 345 ---L~t-~fe--------dh~l~~~~c~~n~~~it 367 (396)
.+| .|| -++.| .||+.++.|
T Consensus 205 i~k~It~pf~~~~~~T~f~RlSW---SPDG~~las 236 (942)
T KOG0973|consen 205 IEKSITKPFEESPLTTFFLRLSW---SPDGHHLAS 236 (942)
T ss_pred eeEeeccchhhCCCcceeeeccc---CCCcCeecc
Confidence 222 444 44556 666666554
No 86
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=97.67 E-value=0.00019 Score=72.12 Aligned_cols=195 Identities=17% Similarity=0.206 Sum_probs=122.7
Q ss_pred EEEEEeEecC-CCceeeeEeee-hh-hhhhCCCCCCCcc-----eeecccCCCCeEEeeCCCCcEEEeecCCCeEEEEec
Q 016020 144 LITVSVYASD-NFSSLKCRSTK-IE-YIRRGKPDSGFAL-----FESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDL 215 (396)
Q Consensus 144 lI~vSv~~sd-~~s~L~cr~~~-~~-~i~~gk~~~~~~L-----F~~~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdl 215 (396)
=|..++|.-. +-..|.|.++= ++ .++. . ...+| ..++.+..=.-|||.+ |+.-+++= .|..+-+|+|
T Consensus 77 ~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~--S-~~~tlE~v~~Ldteavg~i~cvew~P-ns~klasm-~dn~i~l~~l 151 (370)
T KOG1007|consen 77 RILATVYNDTSDSGVLTGAAIWQIPEPLGQ--S-NSSTLECVASLDTEAVGKINCVEWEP-NSDKLASM-DDNNIVLWSL 151 (370)
T ss_pred ceEEEEEeccCCCcceeeEEEEecccccCc--c-ccchhhHhhcCCHHHhCceeeEEEcC-CCCeeEEe-ccCceEEEEc
Confidence 3556677621 22456777764 22 1111 1 11122 2234444557899999 66666643 4999999999
Q ss_pred cCceEEEEeccCceEEEEEcCCe--EEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCccchhhhhcceeeEeecCC
Q 016020 216 KNYTMLYSISDKHVQEIKISPGI--MLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENE 293 (396)
Q Consensus 216 knYs~lysIs~~~VqEIkiSpg~--~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~i~FiE~~~ekLLIKQed~ 293 (396)
.+-+.+ ++|++.|... -.-++.++ |+= || .+..++. -.|.
T Consensus 152 ~ess~~-------vaev~ss~s~e~~~~ftsg~--------Wsp-------------HH---------dgnqv~t-t~d~ 193 (370)
T KOG1007|consen 152 DESSKI-------VAEVLSSESAEMRHSFTSGA--------WSP-------------HH---------DGNQVAT-TSDS 193 (370)
T ss_pred ccCcch-------heeecccccccccceecccc--------cCC-------------CC---------ccceEEE-eCCC
Confidence 987642 4444444211 11111111 111 11 2222222 3478
Q ss_pred eeeEEEccc-ceEEEecccccCCCceEEEeecCeEEEEEEc--CeEEEEeccc--ceeeeeccccccCCC----CCCCcE
Q 016020 294 NLQILDVRN-AELMEVSRTEFMTPSAFIFLYENQLFLTFRN--RTVAVWNFRG--ELVTSFEDHLLWHPD----CNTNNI 364 (396)
Q Consensus 294 ~L~I~Dv~~-~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~--gti~iWd~~g--eL~t~fedh~l~~~~----c~~n~~ 364 (396)
+|+.||++| ++...+.++|.--.+..=|.|+.|-+|+-.. |.|+|||++. ..|+.+++|.-|+=. ..-+.+
T Consensus 194 tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqL 273 (370)
T KOG1007|consen 194 TLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQL 273 (370)
T ss_pred cEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceE
Confidence 999999999 6667799999888999999999999887776 8999999999 599999999999754 455777
Q ss_pred EEccCCc--EEEEeccCCC
Q 016020 365 YITSDQD--LIISYCKAEP 381 (396)
Q Consensus 365 ~it~~qd--~ii~~~~~~~ 381 (396)
.+|..-| ++.++--+-+
T Consensus 274 iLs~~SDs~V~Lsca~svS 292 (370)
T KOG1007|consen 274 ILSGGSDSAVNLSCASSVS 292 (370)
T ss_pred EEecCCCceeEEEeccccc
Confidence 7776554 5555554444
No 87
>PRK01742 tolB translocation protein TolB; Provisional
Probab=97.66 E-value=0.0019 Score=65.17 Aligned_cols=146 Identities=13% Similarity=0.135 Sum_probs=90.9
Q ss_pred eEEeeCCCCcEEEeecCC---CeEEEEeccCce--EEEEeccCceEEEEEcCC-eEEEEEecCCCeeeeEEEEeecCcEE
Q 016020 190 FVEFDDVNGKVLTYSAQD---SIYKVFDLKNYT--MLYSISDKHVQEIKISPG-IMLLIFNRSSSHVPLKILSIEDGTVL 263 (396)
Q Consensus 190 fVEFDd~NgkIlt~~a~d---~~YrVwdlknYs--~lysIs~~~VqEIkiSpg-~~Ll~~q~~~~~iplkIl~IetG~~l 263 (396)
.+.|.+ +|+.|+|.+.+ ..+.+||+++.+ .+-... .....++|||+ -.|++.....+.+-+-++++.+|+..
T Consensus 208 ~p~wSP-DG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~-g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~ 285 (429)
T PRK01742 208 SPAWSP-DGSKLAYVSFENKKSQLVVHDLRSGARKVVASFR-GHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPS 285 (429)
T ss_pred cceEcC-CCCEEEEEEecCCCcEEEEEeCCCCceEEEecCC-CccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCeE
Confidence 456777 78888876543 479999999875 343333 34557999975 45555444444555667788777654
Q ss_pred EEEEeecccCCccchhhhhcceeeEee-cCCeeeEEEccc--ceEEEecccccCCCceEEEeecCeEEEEEEcCeEEEEe
Q 016020 264 KVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRN--AELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWN 340 (396)
Q Consensus 264 ~s~~~~L~~sk~i~FiE~~~ekLLIKQ-ed~~L~I~Dv~~--~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~gti~iWd 340 (396)
.-.... .....+.|.+ .+++|+... .++..+||++.. ++...+ ++.. ...-|+++++.++..+...+-.||
T Consensus 286 ~lt~~~-~~~~~~~wSp-DG~~i~f~s~~~g~~~I~~~~~~~~~~~~l--~~~~--~~~~~SpDG~~ia~~~~~~i~~~D 359 (429)
T PRK01742 286 QLTSGA-GNNTEPSWSP-DGQSILFTSDRSGSPQVYRMSASGGGASLV--GGRG--YSAQISADGKTLVMINGDNVVKQD 359 (429)
T ss_pred eeccCC-CCcCCEEECC-CCCEEEEEECCCCCceEEEEECCCCCeEEe--cCCC--CCccCCCCCCEEEEEcCCCEEEEE
Confidence 322211 1223478888 788888765 567889998753 333222 2211 223478898877666655566699
Q ss_pred ccc
Q 016020 341 FRG 343 (396)
Q Consensus 341 ~~g 343 (396)
+.+
T Consensus 360 l~~ 362 (429)
T PRK01742 360 LTS 362 (429)
T ss_pred CCC
Confidence 876
No 88
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=97.64 E-value=0.0026 Score=67.72 Aligned_cols=177 Identities=12% Similarity=0.109 Sum_probs=135.6
Q ss_pred EeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCc---c
Q 016020 202 TYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKK---V 276 (396)
Q Consensus 202 t~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~---i 276 (396)
+..+.|.++-+|.=-.|++=.++-+ +.|++||+||+=-+++..+. +..+.|+|=-||+.++.|.---+|... +
T Consensus 164 ~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gs--Dgki~iyDGktge~vg~l~~~~aHkGsIfal 241 (603)
T KOG0318|consen 164 ATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGS--DGKIYIYDGKTGEKVGELEDSDAHKGSIFAL 241 (603)
T ss_pred EeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecC--CccEEEEcCCCccEEEEecCCCCccccEEEE
Confidence 3356699999999999998888876 89999999988776555555 889999999999999998844455444 6
Q ss_pred chhhhhcceeeEeecCCeeeEEEcccceEEEecccc----cCCCceEEEeecCeEEEEEEc-CeEEEEeccc-ceeeeec
Q 016020 277 DFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTE----FMTPSAFIFLYENQLFLTFRN-RTVAVWNFRG-ELVTSFE 350 (396)
Q Consensus 277 ~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~----~~~PsAFiFly~~qLFLTfs~-gti~iWd~~g-eL~t~fe 350 (396)
-..+ ++.++|.-.-|.+++|||+.++++..+..-. +++.- =+-.+...+|+|- |++.+.+... +..-.+.
T Consensus 242 sWsP-Ds~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG---~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~ 317 (603)
T KOG0318|consen 242 SWSP-DSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVG---CLWQKDHLITVSLSGTINYLNPSDPSVLKVIS 317 (603)
T ss_pred EECC-CCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEE---EEEeCCeEEEEEcCcEEEEecccCCChhheec
Confidence 7777 8999999999999999999999988732211 11111 1344666888887 9999999887 6555777
Q ss_pred cccccCCC---CCCCcEEEccCCcEEEEeccCCCCCc
Q 016020 351 DHLLWHPD---CNTNNIYITSDQDLIISYCKAEPEDQ 384 (396)
Q Consensus 351 dh~l~~~~---c~~n~~~it~~qd~ii~~~~~~~~~~ 384 (396)
+|.--..- .+++++++|++.|=.|.+-...+..+
T Consensus 318 GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~ 354 (603)
T KOG0318|consen 318 GHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTS 354 (603)
T ss_pred ccccceeEEEEcCCCCEEEeeccCceEEEEecCCccc
Confidence 77654322 77889999999998888766555433
No 89
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=0.0007 Score=71.40 Aligned_cols=226 Identities=13% Similarity=0.147 Sum_probs=167.5
Q ss_pred cchhhhhhccccceeeeccccceEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCC
Q 016020 98 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGF 177 (396)
Q Consensus 98 ~dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~ 177 (396)
..++++=+..|.-..||+++.+.++.+..++..=|=+|=.| ..+++ ++-+|..+-.-++|.++...+.
T Consensus 229 G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~---~~~ls---------sGsr~~~I~~~dvR~~~~~~~~ 296 (484)
T KOG0305|consen 229 GSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN---SSVLS---------SGSRDGKILNHDVRISQHVVST 296 (484)
T ss_pred CCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc---CceEE---------EecCCCcEEEEEEecchhhhhh
Confidence 45778888999999999999999999999988888888777 45555 4456777777777666654431
Q ss_pred -cceee--cccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCe-EEEEEecCCCeee
Q 016020 178 -ALFES--ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGI-MLLIFNRSSSHVP 251 (396)
Q Consensus 178 -~LF~~--~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~-~Ll~~q~~~~~ip 251 (396)
-.=++ +-| +++. .|+-+|+...|+...|||...-..++.+.. -.|.-+.|||-. -||+...-..+.-
T Consensus 297 ~~~H~qeVCgL------kws~-d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~ 369 (484)
T KOG0305|consen 297 LQGHRQEVCGL------KWSP-DGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRC 369 (484)
T ss_pred hhcccceeeee------EECC-CCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccE
Confidence 11112 333 4555 799999999999999999988888888887 789999999754 3556666667899
Q ss_pred eEEEEeecCcEEEEEEeecccCCccchhhhhcceeeEee--cCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEE
Q 016020 252 LKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ--ENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFL 329 (396)
Q Consensus 252 lkIl~IetG~~l~s~~~~L~~sk~i~FiE~~~ekLLIKQ--ed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFL 329 (396)
+++|++.+|+.+.+..-- .+=.-+-++...+| |+..+ -...|.||+.-+-+.+...-+|..-+-..--+|+++-.+
T Consensus 370 i~fwn~~~g~~i~~vdtg-sQVcsL~Wsk~~kE-i~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~ 447 (484)
T KOG0305|consen 370 IKFWNTNTGARIDSVDTG-SQVCSLIWSKKYKE-LLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIV 447 (484)
T ss_pred EEEEEcCCCcEecccccC-CceeeEEEcCCCCE-EEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEE
Confidence 999999999999864400 00001223332222 23322 223799999999999999899988887778889999888
Q ss_pred EEEc-CeEEEEecccc
Q 016020 330 TFRN-RTVAVWNFRGE 344 (396)
Q Consensus 330 Tfs~-gti~iWd~~ge 344 (396)
|... .|+++|++-+.
T Consensus 448 t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 448 TGAADETLRFWNLFDE 463 (484)
T ss_pred EecccCcEEeccccCC
Confidence 8877 89999999885
No 90
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=97.63 E-value=0.00071 Score=70.17 Aligned_cols=216 Identities=17% Similarity=0.153 Sum_probs=141.9
Q ss_pred hhhhhhccccceeeeccccceEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcc
Q 016020 100 IVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFAL 179 (396)
Q Consensus 100 ii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~L 179 (396)
.++|-++.|-|+.|+-.+.+..-.|-.-.|+|---=|+-..+. +|.-| - =|++..-+|..+.- ...+|
T Consensus 233 ~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~-vVsgs----~------DRtiK~WDl~k~~C-~kt~l 300 (459)
T KOG0288|consen 233 HVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSR-VVSGS----A------DRTIKLWDLQKAYC-SKTVL 300 (459)
T ss_pred eEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccc-eeecc----c------cchhhhhhhhhhhe-ecccc
Confidence 4455556666666666666666666664444433334333222 33322 1 14455555554221 11233
Q ss_pred eeecccCCCCeEEeeCC-CCcEEEeecCCCeEEEEeccCceEEEEecc-CceEEEEEc-CCeEEEEEecCCCeeeeEEEE
Q 016020 180 FESESLKWPGFVEFDDV-NGKVLTYSAQDSIYKVFDLKNYTMLYSISD-KHVQEIKIS-PGIMLLIFNRSSSHVPLKILS 256 (396)
Q Consensus 180 F~~~~l~~PgfVEFDd~-NgkIlt~~a~d~~YrVwdlknYs~lysIs~-~~VqEIkiS-pg~~Ll~~q~~~~~iplkIl~ 256 (396)
+ +--.+|=+ ++..++++--|+.+|+||.+.-...+++.. -.|..+-+| +|..||.+.+. =.++++|
T Consensus 301 ~--------~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRD---dtl~viD 369 (459)
T KOG0288|consen 301 P--------GSQCNDIVCSISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRD---DTLKVID 369 (459)
T ss_pred c--------cccccceEecceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCC---Cceeeee
Confidence 3 22233322 255566666699999999999999999998 788899988 56667666544 4577888
Q ss_pred eecCcEEEEEE---eeccc-CCccchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCC--CceEEEeecCeEEEE
Q 016020 257 IEDGTVLKVFY---HLLHR-NKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMT--PSAFIFLYENQLFLT 330 (396)
Q Consensus 257 IetG~~l~s~~---~~L~~-sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~--PsAFiFly~~qLFLT 330 (396)
+-+.+.-..+. +...+ -..++|.+ .++|++-+.-|+++.||++.++||-+++.+..-. .-+.-|.|-+.-.|+
T Consensus 370 lRt~eI~~~~sA~g~k~asDwtrvvfSp-d~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Lls 448 (459)
T KOG0288|consen 370 LRTKEIRQTFSAEGFKCASDWTRVVFSP-DGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLS 448 (459)
T ss_pred cccccEEEEeeccccccccccceeEECC-CCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhc
Confidence 88888877665 22222 23499999 9999999999999999999999999987766555 445556677777777
Q ss_pred EEc-CeEEEE
Q 016020 331 FRN-RTVAVW 339 (396)
Q Consensus 331 fs~-gti~iW 339 (396)
.+. +.+.+|
T Consensus 449 adk~~~v~lW 458 (459)
T KOG0288|consen 449 ADKQKAVTLW 458 (459)
T ss_pred ccCCcceEec
Confidence 766 677777
No 91
>PRK01742 tolB translocation protein TolB; Provisional
Probab=97.63 E-value=0.002 Score=65.05 Aligned_cols=132 Identities=12% Similarity=0.105 Sum_probs=89.4
Q ss_pred CCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEec-CCCeeeeEEEEeecCcEEEEEEeecccCCccchhhhhc
Q 016020 207 DSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNR-SSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFN 283 (396)
Q Consensus 207 d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~-~~~~iplkIl~IetG~~l~s~~~~L~~sk~i~FiE~~~ 283 (396)
++.+.+||+.++... .+.. ..+...+|||+--.+++.. .+..--+.+|++.+|+...-..+ -.+...+.|.+ .|
T Consensus 183 ~~~i~i~d~dg~~~~-~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~-~g~~~~~~wSP-DG 259 (429)
T PRK01742 183 PYEVRVADYDGFNQF-IVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASF-RGHNGAPAFSP-DG 259 (429)
T ss_pred eEEEEEECCCCCCce-EeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecC-CCccCceeECC-CC
Confidence 478899999877643 3433 5689999997765444433 22334589999999975432221 14455688988 89
Q ss_pred ceeeEee-cCCeeeEE--EcccceEEEecccccCCCceEEEeecCeEEEEEEc--CeEEEEecc
Q 016020 284 EKLLVKQ-ENENLQIL--DVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN--RTVAVWNFR 342 (396)
Q Consensus 284 ekLLIKQ-ed~~L~I~--Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~--gti~iWd~~ 342 (396)
++|++-. .++..+|| |+.++++..+.. +.....+..|.++++.++..++ |...||+.+
T Consensus 260 ~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~-~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~ 322 (429)
T PRK01742 260 SRLAFASSKDGVLNIYVMGANGGTPSQLTS-GAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMS 322 (429)
T ss_pred CEEEEEEecCCcEEEEEEECCCCCeEeecc-CCCCcCCEEECCCCCEEEEEECCCCCceEEEEE
Confidence 9998864 56655655 777888776643 3445677889999986554444 789999875
No 92
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=97.62 E-value=0.00071 Score=67.11 Aligned_cols=175 Identities=16% Similarity=0.226 Sum_probs=130.5
Q ss_pred cceeeeeccCCCCCccccccccccccceEEEeecc--chhhhhhccccceeeeccccceEEEecCCCCceEEEEeeecCC
Q 016020 64 HLVEEYDTHDPKGHCPFVLPFLMKRTKVIEIVAAR--DIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNN 141 (396)
Q Consensus 64 ~l~~~~D~~d~~~~~~~~~~~l~~RS~V~EIv~a~--dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n 141 (396)
+|-.+||.-.|++...-+ =.....|+..+... -.|+--+.-|..+.||+.||. .++||++|..=
T Consensus 122 kllrvfdln~p~App~E~---~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt-----------~v~sL~~~s~V 187 (334)
T KOG0278|consen 122 KLLRVFDLNRPKAPPKEI---SGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGT-----------EVQSLEFNSPV 187 (334)
T ss_pred HHhhhhhccCCCCCchhh---cCCCCcceeEEEeccCceEEeeccCCceEEEEeccCc-----------EEEEEecCCCC
Confidence 345678888888766332 12345566666652 233333677888888888874 57788888533
Q ss_pred CeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcceeecccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEE
Q 016020 142 DSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTML 221 (396)
Q Consensus 142 ~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF~~~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~l 221 (396)
.| .|... .|+|||- +..+.+++||.+++..|
T Consensus 188 tS-----------------------------------------------lEvs~-dG~ilTi-a~gssV~Fwdaksf~~l 218 (334)
T KOG0278|consen 188 TS-----------------------------------------------LEVSQ-DGRILTI-AYGSSVKFWDAKSFGLL 218 (334)
T ss_pred cc-----------------------------------------------eeecc-CCCEEEE-ecCceeEEeccccccce
Confidence 32 23333 5788873 56788999999999999
Q ss_pred EEecc-CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCc---cchhhhhcceeeEeecCCeeeE
Q 016020 222 YSISD-KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKK---VDFIEQFNEKLLVKQENENLQI 297 (396)
Q Consensus 222 ysIs~-~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I 297 (396)
++..- -+|..--++|..-.++.... ++.+.-||-.||+++.+++ . .|-.+ +.|.+ .||.-.+++||+.|+|
T Consensus 219 Ks~k~P~nV~SASL~P~k~~fVaGge--d~~~~kfDy~TgeEi~~~n-k-gh~gpVhcVrFSP-dGE~yAsGSEDGTirl 293 (334)
T KOG0278|consen 219 KSYKMPCNVESASLHPKKEFFVAGGE--DFKVYKFDYNTGEEIGSYN-K-GHFGPVHCVRFSP-DGELYASGSEDGTIRL 293 (334)
T ss_pred eeccCccccccccccCCCceEEecCc--ceEEEEEeccCCceeeecc-c-CCCCceEEEEECC-CCceeeccCCCceEEE
Confidence 98877 78888889999987777766 8999999999999999973 1 33344 89999 9999999999999999
Q ss_pred EEcccceEE
Q 016020 298 LDVRNAELM 306 (396)
Q Consensus 298 ~Dv~~~ki~ 306 (396)
|-+.-++..
T Consensus 294 WQt~~~~~~ 302 (334)
T KOG0278|consen 294 WQTTPGKTY 302 (334)
T ss_pred EEecCCCch
Confidence 998877766
No 93
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=97.61 E-value=0.0025 Score=66.66 Aligned_cols=268 Identities=16% Similarity=0.179 Sum_probs=164.6
Q ss_pred ccccc--ceEEEeeccchhhhhhccccceeeeccccceEEEecCCCC-ceEEEEeeecCCC-eEEEEEeEecCCCceeee
Q 016020 85 LMKRT--KVIEIVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPD-EVIRSLFYNKNND-SLITVSVYASDNFSSLKC 160 (396)
Q Consensus 85 l~~RS--~V~EIv~a~dii~~L~~sG~c~af~~~t~~~ic~lN~s~~-evIrsifyN~~n~-slI~vSv~~sd~~s~L~c 160 (396)
-||+. ++-|=++--|-+..|.+.-=....+..+=.-+|-|-+.+. ..|++. -+| .++.
T Consensus 184 ~rKkrg~k~p~~la~~d~~~~~~q~ash~gLH~t~~pgi~ald~~~s~~~ilTG----G~d~~av~-------------- 245 (506)
T KOG0289|consen 184 ERKKRGKKLPEKLATTDELSCLLQVASHTGLHSTSTPGITALDIIPSSSKILTG----GEDKTAVL-------------- 245 (506)
T ss_pred HhhhccccCCcccccHHHHHHHHhcCCCcceeccCCCCeeEEeecCCCCcceec----CCCCceEE--------------
Confidence 35555 7788888888888887654433223233344554433332 444432 112 2221
Q ss_pred EeeehhhhhhCCCCCCCcceeecccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEec-c-CceEEEEEcCCe
Q 016020 161 RSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-D-KHVQEIKISPGI 238 (396)
Q Consensus 161 r~~~~~~i~~gk~~~~~~LF~~~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs-~-~~VqEIkiSpg~ 238 (396)
--.+.+.+.. +|+.-.++ =--|.|-+.+..+++. +.|.++|||..-+-+.--++- . +-|..+..-|.-
T Consensus 246 ~d~~s~q~l~--------~~~Gh~kk-i~~v~~~~~~~~v~~a-Sad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tg 315 (506)
T KOG0289|consen 246 FDKPSNQILA--------TLKGHTKK-ITSVKFHKDLDTVITA-SADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTG 315 (506)
T ss_pred Eecchhhhhh--------hccCcceE-EEEEEeccchhheeec-CCcceEEeeccccccCccccccccccceeeeeccCC
Confidence 1222333322 33332111 1135566655555554 569999999999988333322 2 666766666555
Q ss_pred EEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCc-----cchhhhhcceeeEeecCCeeeEEEcccceEEEeccccc
Q 016020 239 MLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKK-----VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEF 313 (396)
Q Consensus 239 ~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~-----i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~ 313 (396)
=-++.... ....---|+++|..+-..-. -+++ .+|-+ +|--+-.+..|+-|+|||+.++.-.--=++|.
T Consensus 316 eYllsAs~--d~~w~Fsd~~~g~~lt~vs~---~~s~v~~ts~~fHp-DgLifgtgt~d~~vkiwdlks~~~~a~Fpght 389 (506)
T KOG0289|consen 316 EYLLSASN--DGTWAFSDISSGSQLTVVSD---ETSDVEYTSAAFHP-DGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHT 389 (506)
T ss_pred cEEEEecC--CceEEEEEccCCcEEEEEee---ccccceeEEeeEcC-CceEEeccCCCceEEEEEcCCccccccCCCCC
Confidence 54455444 56666778888887764431 1222 44444 66666777899999999999977443345688
Q ss_pred CCCceEEEeecCeEEEEEEc-CeEEEEeccc--ceee-eecccccc--CCCCCCCcEEEccCCcEEEEeccCCCCCcccc
Q 016020 314 MTPSAFIFLYENQLFLTFRN-RTVAVWNFRG--ELVT-SFEDHLLW--HPDCNTNNIYITSDQDLIISYCKAEPEDQWME 387 (396)
Q Consensus 314 ~~PsAFiFly~~qLFLTfs~-gti~iWd~~g--eL~t-~fedh~l~--~~~c~~n~~~it~~qd~ii~~~~~~~~~~~~~ 387 (396)
-+.++.-|.-+|-..+|-.+ +.|++||++- ...| .+++...- ...=.++++-+.+.+||=|=-||.. ..+|.|
T Consensus 390 ~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~-~k~W~~ 468 (506)
T KOG0289|consen 390 GPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKK-TKSWTE 468 (506)
T ss_pred CceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecc-ccccee
Confidence 89999999888887888888 6699999998 3555 45554221 2224567888888999999999854 446655
No 94
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.61 E-value=0.00023 Score=77.89 Aligned_cols=182 Identities=17% Similarity=0.227 Sum_probs=130.1
Q ss_pred CeEEeeCCCCcEEEeecCCCeEEEEeccCce--EEEEeccCceEEEEEcCCeEEEEEecCCCeeeeEEEEeec-CcEEEE
Q 016020 189 GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT--MLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIED-GTVLKV 265 (396)
Q Consensus 189 gfVEFDd~NgkIlt~~a~d~~YrVwdlknYs--~lysIs~~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~Iet-G~~l~s 265 (396)
-=++|-.+.--||.+.+||+++|.|||+-=+ ..|.=-.|-|-||+|||+--- .+...+.-..|.+|||-- -+..+.
T Consensus 137 ~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~-~F~s~~dsG~lqlWDlRqp~r~~~k 215 (839)
T KOG0269|consen 137 NKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGN-KFASIHDSGYLQLWDLRQPDRCEKK 215 (839)
T ss_pred eeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCc-eEEEecCCceEEEeeccCchhHHHH
Confidence 4588888889999999999999999998665 333334499999999998743 334444556677777642 333333
Q ss_pred EEeecccCCc---cchhhhhcceeeEeecCCeeeEEEcccceEEE--ecccccCCCceEEEeecCeEEEEEEc----CeE
Q 016020 266 FYHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNAELME--VSRTEFMTPSAFIFLYENQLFLTFRN----RTV 336 (396)
Q Consensus 266 ~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~--v~~t~~~~PsAFiFly~~qLFLTfs~----gti 336 (396)
|. +|+.+ ++.-+ -+++|..+-.|+-++|||+-+++.-. +-.|. .+.-..-|=|+++.-|..++ -.|
T Consensus 216 ~~---AH~GpV~c~nwhP-nr~~lATGGRDK~vkiWd~t~~~~~~~~tInTi-apv~rVkWRP~~~~hLAtcsmv~dtsV 290 (839)
T KOG0269|consen 216 LT---AHNGPVLCLNWHP-NREWLATGGRDKMVKIWDMTDSRAKPKHTINTI-APVGRVKWRPARSYHLATCSMVVDTSV 290 (839)
T ss_pred hh---cccCceEEEeecC-CCceeeecCCCccEEEEeccCCCccceeEEeec-ceeeeeeeccCccchhhhhhccccceE
Confidence 33 66666 67777 89999999999999999999754433 22222 34455667788887777766 589
Q ss_pred EEEecccc--eeeeeccccccCCCCCCCcEEEccCCcEEEEeccCC
Q 016020 337 AVWNFRGE--LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAE 380 (396)
Q Consensus 337 ~iWd~~ge--L~t~fedh~l~~~~c~~n~~~it~~qd~ii~~~~~~ 380 (396)
.|||++-- ...+|+-|-. -.++..+=+.|-+++.|.=|..
T Consensus 291 ~VWDvrRPYIP~~t~~eH~~----~vt~i~W~~~d~~~l~s~sKD~ 332 (839)
T KOG0269|consen 291 HVWDVRRPYIPYATFLEHTD----SVTGIAWDSGDRINLWSCSKDG 332 (839)
T ss_pred EEEeeccccccceeeeccCc----cccceeccCCCceeeEeecCcc
Confidence 99999884 5567777654 4566667678888888766643
No 95
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=97.58 E-value=0.0012 Score=65.51 Aligned_cols=182 Identities=15% Similarity=0.250 Sum_probs=137.9
Q ss_pred CeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc----CceEEEEEcCCe-EEEEEecCCCeeeeEEEEeecCcEE
Q 016020 189 GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD----KHVQEIKISPGI-MLLIFNRSSSHVPLKILSIEDGTVL 263 (396)
Q Consensus 189 gfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~----~~VqEIkiSpg~-~Ll~~q~~~~~iplkIl~IetG~~l 263 (396)
.-|-+.- +|.=|+..+.|+..+||++..-.++++.-. ..|-++-+.|-. -++.... ....+.+||+-.||+.
T Consensus 24 ~Sv~wn~-~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas--~dk~ir~wd~r~~k~~ 100 (313)
T KOG1407|consen 24 HSVAWNC-DGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATAS--GDKTIRIWDIRSGKCT 100 (313)
T ss_pred eEEEEcc-cCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEec--CCceEEEEEeccCcEE
Confidence 3455554 799999999999999999999988877765 466677776433 2222322 3678999999999999
Q ss_pred EEEEeecccCCccchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc-CeEEEEecc
Q 016020 264 KVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNFR 342 (396)
Q Consensus 264 ~s~~~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~~ 342 (396)
...... .-+-.+...+ .++|+.+...|.-|.++|.++.++.+.- ..+.-.-...+...+.+|+--.- |+|+|-..-
T Consensus 101 ~~i~~~-~eni~i~wsp-~g~~~~~~~kdD~it~id~r~~~~~~~~-~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsyp 177 (313)
T KOG1407|consen 101 ARIETK-GENINITWSP-DGEYIAVGNKDDRITFIDARTYKIVNEE-QFKFEVNEISWNNSNDLFFLTNGLGCVEILSYP 177 (313)
T ss_pred EEeecc-CcceEEEEcC-CCCEEEEecCcccEEEEEecccceeehh-cccceeeeeeecCCCCEEEEecCCceEEEEecc
Confidence 987722 2333366677 9999999999999999999999988642 22233345566677777555444 999999998
Q ss_pred c-ceeeeeccccccCCCC------CCCcEEEccCCcEEEEeccC
Q 016020 343 G-ELVTSFEDHLLWHPDC------NTNNIYITSDQDLIISYCKA 379 (396)
Q Consensus 343 g-eL~t~fedh~l~~~~c------~~n~~~it~~qd~ii~~~~~ 379 (396)
. +.|+++.-|- .|| |+|++|-+..-|-++|--..
T Consensus 178 sLkpv~si~AH~---snCicI~f~p~GryfA~GsADAlvSLWD~ 218 (313)
T KOG1407|consen 178 SLKPVQSIKAHP---SNCICIEFDPDGRYFATGSADALVSLWDV 218 (313)
T ss_pred ccccccccccCC---cceEEEEECCCCceEeeccccceeeccCh
Confidence 8 8999999997 565 89999999999999986443
No 96
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.56 E-value=6e-05 Score=81.95 Aligned_cols=139 Identities=17% Similarity=0.307 Sum_probs=110.7
Q ss_pred CCCeEEEEeccCceEEEEeccCceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEE-eecccCCccchhhhhcc
Q 016020 206 QDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFY-HLLHRNKKVDFIEQFNE 284 (396)
Q Consensus 206 ~d~~YrVwdlknYs~lysIs~~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~-~~L~~sk~i~FiE~~~e 284 (396)
.+++-++|+..- |.-..--|..+++...=.|+....+ ...+|+||||.++.+..+. |++.. -.++|-+ +++
T Consensus 54 L~~i~kp~~i~S----~~~hespIeSl~f~~~E~Llaagsa--sgtiK~wDleeAk~vrtLtgh~~~~-~sv~f~P-~~~ 125 (825)
T KOG0267|consen 54 LWAIGKPNAITS----LTGHESPIESLTFDTSERLLAAGSA--SGTIKVWDLEEAKIVRTLTGHLLNI-TSVDFHP-YGE 125 (825)
T ss_pred cccccCCchhhe----eeccCCcceeeecCcchhhhccccc--CCceeeeehhhhhhhhhhhccccCc-ceeeecc-ceE
Confidence 355556666553 4555678899999999988888888 6789999999999998754 33322 3489888 999
Q ss_pred eeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc-CeEEEEec-ccceeeeeccc
Q 016020 285 KLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNF-RGELVTSFEDH 352 (396)
Q Consensus 285 kLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~-~geL~t~fedh 352 (396)
|-....-|-++.|||++..-|.+.-+.|.--....-|.|++.+-..=-+ .+++|||. +|++...|+.|
T Consensus 126 ~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~ 195 (825)
T KOG0267|consen 126 FFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSH 195 (825)
T ss_pred EeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccc
Confidence 9999999999999999998888887777777788889999987766655 89999998 55787777733
No 97
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=97.56 E-value=0.0017 Score=63.97 Aligned_cols=141 Identities=18% Similarity=0.302 Sum_probs=108.9
Q ss_pred CCcEEEeecCCCeEEEEeccCceEEEEecc---------CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEE
Q 016020 197 NGKVLTYSAQDSIYKVFDLKNYTMLYSISD---------KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFY 267 (396)
Q Consensus 197 NgkIlt~~a~d~~YrVwdlknYs~lysIs~---------~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~ 267 (396)
||...++.+||.++|+|||+--+++-.+.. -.|..|.+-|.--||+...+ +-.-+++||.-|..+.+|-
T Consensus 193 n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~--dssc~lydirg~r~iq~f~ 270 (350)
T KOG0641|consen 193 NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHA--DSSCMLYDIRGGRMIQRFH 270 (350)
T ss_pred cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccC--CCceEEEEeeCCceeeeeC
Confidence 566667889999999999999999888764 46889999999888888877 5677899999999999988
Q ss_pred eecccCCc---cchhhhhcceeeEeecCCeeeEEEccc---ceEEE-ecccccCCCceEEEeecCeEEEEEEc-CeEEEE
Q 016020 268 HLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRN---AELME-VSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVW 339 (396)
Q Consensus 268 ~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~---~ki~~-v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iW 339 (396)
+|+.+ |.|.+ ---|||...-|..|++-|+.- .++-. |-.+|.+..---..-+..=-|++-|- +|+.+|
T Consensus 271 ---phsadir~vrfsp-~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlw 346 (350)
T KOG0641|consen 271 ---PHSADIRCVRFSP-GAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLW 346 (350)
T ss_pred ---CCccceeEEEeCC-CceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEe
Confidence 88888 78988 788999999999999999853 33322 44555554333333333333666555 899999
Q ss_pred eccc
Q 016020 340 NFRG 343 (396)
Q Consensus 340 d~~g 343 (396)
-+.|
T Consensus 347 a~~~ 350 (350)
T KOG0641|consen 347 ALNG 350 (350)
T ss_pred ccCC
Confidence 8765
No 98
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=97.55 E-value=0.00096 Score=69.17 Aligned_cols=194 Identities=16% Similarity=0.166 Sum_probs=129.1
Q ss_pred cCCCCeE---EeeCCCCcEEEeecCCCeEEEEeccCceEEEEeccCceEEEEEcCCeEEEEEe-----------------
Q 016020 185 LKWPGFV---EFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFN----------------- 244 (396)
Q Consensus 185 l~~PgfV---EFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~~~VqEIkiSpg~~Ll~~q----------------- 244 (396)
+.|||=| .+=+-|-.|+|.-...+.+-|||+..+.-....+++ .-|++.|.-.+
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~------~~Pdl~L~gH~~eg~glsWn~~~~g~Ll 194 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGE------CRPDLRLKGHEKEGYGLSWNRQQEGTLL 194 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCccccccc------CCCceEEEeecccccccccccccceeEe
Confidence 5556543 345678899999999999999999999877765531 11222222222
Q ss_pred cCCCeeeeEEEEeecCcE----EEEEEeecccCCc---cchhhhhcceeeEeecCCeeeEEEcc--cceEEEecccccCC
Q 016020 245 RSSSHVPLKILSIEDGTV----LKVFYHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVR--NAELMEVSRTEFMT 315 (396)
Q Consensus 245 ~~~~~iplkIl~IetG~~----l~s~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~--~~ki~~v~~t~~~~ 315 (396)
.+++.-.+-+|||..... +......=.|+.- +.|......-.-.--+|+-|.|||+| +.+..++-.+|...
T Consensus 195 s~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~ 274 (422)
T KOG0264|consen 195 SGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAE 274 (422)
T ss_pred eccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCc
Confidence 234567889999987544 2222222133332 88888555555556799999999999 78888888899999
Q ss_pred CceEEEeecCeE-EEEEE-cCeEEEEeccc--ceeeeeccccccCCC----CCCCcEEEccCCc--EEEEeccCCCCCc
Q 016020 316 PSAFIFLYENQL-FLTFR-NRTVAVWNFRG--ELVTSFEDHLLWHPD----CNTNNIYITSDQD--LIISYCKAEPEDQ 384 (396)
Q Consensus 316 PsAFiFly~~qL-FLTfs-~gti~iWd~~g--eL~t~fedh~l~~~~----c~~n~~~it~~qd--~ii~~~~~~~~~~ 384 (396)
.-+.-|.|.++. +.|-| |++|.+||+|- +-.-+||+|---+.. ....++.-|+-.| |.|==+..-++.|
T Consensus 275 vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq 353 (422)
T KOG0264|consen 275 VNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQ 353 (422)
T ss_pred eeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEecccccccc
Confidence 999999986665 55666 49999999998 456688888543222 3455666655444 4444444444444
No 99
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=97.51 E-value=0.00036 Score=72.81 Aligned_cols=177 Identities=20% Similarity=0.211 Sum_probs=120.9
Q ss_pred CCcEEEeecCCC-eEEEEeccCceEEEEeccC---ceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEE-EEeecc
Q 016020 197 NGKVLTYSAQDS-IYKVFDLKNYTMLYSISDK---HVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKV-FYHLLH 271 (396)
Q Consensus 197 NgkIlt~~a~d~-~YrVwdlknYs~lysIs~~---~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s-~~~~L~ 271 (396)
-+-+++.++.|- ...+||++++.-+-+..+- --+....=.+-.||..|.... -+.+|.|+.-..... +. ++
T Consensus 6 e~~~~sssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l~~~yllsaq~~rp--~l~vw~i~k~~~~~q~~v--~P 81 (476)
T KOG0646|consen 6 EGTVCSSSSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTALNNEYLLSAQLKRP--LLHVWEILKKDQVVQYIV--LP 81 (476)
T ss_pred eEEEEeccCCCCcceeEEecCCCceeEEecCcccccchhhhhhchhheeeecccCc--cccccccCchhhhhhhcc--cc
Confidence 344556666554 4999999999977666542 111122223345566666655 566777766555441 11 11
Q ss_pred -cCCccchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc-CeEEEEeccc------
Q 016020 272 -RNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNFRG------ 343 (396)
Q Consensus 272 -~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~~g------ 343 (396)
...-+.=. ..|.+|+-+-+-++|-||-|.+|+++.+..+|.-...+..|..|+..|+|-++ |.|.+|++--
T Consensus 82 g~v~al~s~-n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~ 160 (476)
T KOG0646|consen 82 GPVHALASS-NLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADN 160 (476)
T ss_pred cceeeeecC-CCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeeccccc
Confidence 11111111 15666776669999999999999999999999999999999999999999998 9999998632
Q ss_pred ----ceeeeeccccccCCC-----CCCCcEEEccCCcEEEEecc
Q 016020 344 ----ELVTSFEDHLLWHPD-----CNTNNIYITSDQDLIISYCK 378 (396)
Q Consensus 344 ----eL~t~fedh~l~~~~-----c~~n~~~it~~qd~ii~~~~ 378 (396)
...-.|.||-+..-+ -..|...+|+.+|=.|.-..
T Consensus 161 ~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wd 204 (476)
T KOG0646|consen 161 DHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWD 204 (476)
T ss_pred CCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEE
Confidence 234478888887666 33667778888887776543
No 100
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.50 E-value=0.012 Score=67.17 Aligned_cols=199 Identities=12% Similarity=0.212 Sum_probs=129.2
Q ss_pred eeecccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc-------------------CceEEEEEcC-CeE
Q 016020 180 FESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-------------------KHVQEIKISP-GIM 239 (396)
Q Consensus 180 F~~~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~-------------------~~VqEIkiSp-g~~ 239 (396)
|....+.+|--+-||+.++.+...+.....++++|+.+.. +-.+-+ ..-++|.++| +-.
T Consensus 618 ~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~ 696 (1057)
T PLN02919 618 FEDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEK 696 (1057)
T ss_pred hhccccCCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCe
Confidence 4567889999999998777788888888899999998754 323311 1235788887 444
Q ss_pred EEEEecCCCeeeeEEEEeecCcEEEEE--------E------eecccCCccchhhhhcceeeEe-ecCCeeeEEEcccce
Q 016020 240 LLIFNRSSSHVPLKILSIEDGTVLKVF--------Y------HLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNAE 304 (396)
Q Consensus 240 Ll~~q~~~~~iplkIl~IetG~~l~s~--------~------~~L~~sk~i~FiE~~~ekLLIK-Qed~~L~I~Dv~~~k 304 (396)
+.+.....+. +.+|+..+|....-. . ..+..-..|.|.+ .+++|+|- .+++.|++||+.+++
T Consensus 697 LyVad~~~~~--I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavsp-dG~~LYVADs~n~~Irv~D~~tg~ 773 (1057)
T PLN02919 697 VYIAMAGQHQ--IWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSP-DLKELYIADSESSSIRALDLKTGG 773 (1057)
T ss_pred EEEEECCCCe--EEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeC-CCCEEEEEECCCCeEEEEECCCCc
Confidence 4454433222 567777777543200 0 0011112256655 56667655 467999999999876
Q ss_pred EEEec---------------------ccccCCCceEEEeecCeEEEEEEc-CeEEEEecccceeeeeccc----------
Q 016020 305 LMEVS---------------------RTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNFRGELVTSFEDH---------- 352 (396)
Q Consensus 305 i~~v~---------------------~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~~geL~t~fedh---------- 352 (396)
...+. ...+..|....|.+++++|++=+. +.|.+||.++..++.+-..
T Consensus 774 ~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~ 853 (1057)
T PLN02919 774 SRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKA 853 (1057)
T ss_pred EEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcc
Confidence 43221 124567999999999999999877 7999999987433322111
Q ss_pred ---cccCCC----CCCCcEEEccCCcEEEEeccCCCC
Q 016020 353 ---LLWHPD----CNTNNIYITSDQDLIISYCKAEPE 382 (396)
Q Consensus 353 ---~l~~~~----c~~n~~~it~~qd~ii~~~~~~~~ 382 (396)
.+..|. .+++++||+...+=-|.....+..
T Consensus 854 ~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~ 890 (1057)
T PLN02919 854 LKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKG 890 (1057)
T ss_pred cccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCC
Confidence 122333 356788888877777777766543
No 101
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=97.48 E-value=0.0016 Score=66.19 Aligned_cols=208 Identities=13% Similarity=0.234 Sum_probs=142.1
Q ss_pred CCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeee-------hhhhhhCCCCCCCcceee--cccCCCCeEEeeCCC
Q 016020 127 SPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTK-------IEYIRRGKPDSGFALFES--ESLKWPGFVEFDDVN 197 (396)
Q Consensus 127 s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~-------~~~i~~gk~~~~~~LF~~--~~l~~PgfVEFDd~N 197 (396)
++....|.-=||.. .+|+ +..|-+ .+.|.--+. -+++..|...++-|+--+ +-.---..++|-+ .
T Consensus 110 ~HK~~cR~aafs~D-G~lv---ATGsaD-~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP-r 183 (430)
T KOG0640|consen 110 SHKSPCRAAAFSPD-GSLV---ATGSAD-ASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP-R 183 (430)
T ss_pred ecccceeeeeeCCC-CcEE---EccCCc-ceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc-h
Confidence 44556666666642 3333 334444 233332221 235666666666665554 1111124678877 7
Q ss_pred CcEEEeecCCCeEEEEeccCce---EEEEecc-CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccC
Q 016020 198 GKVLTYSAQDSIYKVFDLKNYT---MLYSISD-KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRN 273 (396)
Q Consensus 198 gkIlt~~a~d~~YrVwdlknYs---~lysIs~-~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~s 273 (396)
.-||++.+.|+++|+||.---+ -.+.+.+ +.|..|-+-|+=-+|+-.-. |-.++++||+|-++-.+.+-.-.|+
T Consensus 184 e~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTd--Hp~~rlYdv~T~QcfvsanPd~qht 261 (430)
T KOG0640|consen 184 ETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTD--HPTLRLYDVNTYQCFVSANPDDQHT 261 (430)
T ss_pred hheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecC--CCceeEEeccceeEeeecCcccccc
Confidence 8999999999999999986554 3445555 88999999887665555555 4568999999999999887222233
Q ss_pred Cc---cchhhhhcceeeEeecCCeeeEEEcccceEEE-eccccc-CCCceEEEeecCeEEEEEEc-CeEEEEeccc
Q 016020 274 KK---VDFIEQFNEKLLVKQENENLQILDVRNAELME-VSRTEF-MTPSAFIFLYENQLFLTFRN-RTVAVWNFRG 343 (396)
Q Consensus 274 k~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~-v~~t~~-~~PsAFiFly~~qLFLTfs~-gti~iWd~~g 343 (396)
.- |.+.+ .+.--+....|+-|+|||=.+++|++ +.++|. ...-..+|.-++...|+.-. -++++|....
T Consensus 262 ~ai~~V~Ys~-t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t 336 (430)
T KOG0640|consen 262 GAITQVRYSS-TGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEIST 336 (430)
T ss_pred cceeEEEecC-CccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecC
Confidence 22 77887 67777778899999999999999998 444443 34566789888888887655 6999999876
No 102
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=97.46 E-value=0.0021 Score=71.19 Aligned_cols=191 Identities=17% Similarity=0.234 Sum_probs=134.4
Q ss_pred cceeecccCCCCeEEeeCCCCc------EEEeecCCCeEEEEeccCceE-EEEeccC-------ceEEEEEcCCeEEEEE
Q 016020 178 ALFESESLKWPGFVEFDDVNGK------VLTYSAQDSIYKVFDLKNYTM-LYSISDK-------HVQEIKISPGIMLLIF 243 (396)
Q Consensus 178 ~LF~~~~l~~PgfVEFDd~Ngk------Ilt~~a~d~~YrVwdlknYs~-lysIs~~-------~VqEIkiSpg~~Ll~~ 243 (396)
-+|.++.++-|--+||+-.|.| |+|.+..+...+.|++++-.. .|.+... ++..+.+|+==.+.+-
T Consensus 386 ~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~I 465 (910)
T KOG1539|consen 386 NVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFI 465 (910)
T ss_pred cccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEE
Confidence 3788899999999999987766 789999999999999999886 6666554 7777777753222222
Q ss_pred ecCCCeeeeEEEEeecCcEEEEEEeecccCCc---------------------cchhhhhcceeeEee------------
Q 016020 244 NRSSSHVPLKILSIEDGTVLKVFYHLLHRNKK---------------------VDFIEQFNEKLLVKQ------------ 290 (396)
Q Consensus 244 q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~---------------------i~FiE~~~ekLLIKQ------------ 290 (396)
... ...+.+|++|.|..-++|--.-.|.++ +-|-- |+++.|+++
T Consensus 466 G~S--~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~-f~~k~l~~~l~l~~~~~~iv~ 542 (910)
T KOG1539|consen 466 GYS--KGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWD-FKKKVLKKSLRLGSSITGIVY 542 (910)
T ss_pred ecc--CCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEe-cCCcceeeeeccCCCcceeee
Confidence 222 245677888887777766211111122 22222 455554444
Q ss_pred -----------cCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc-CeEEEEeccc-ceee--eecccccc
Q 016020 291 -----------ENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNFRG-ELVT--SFEDHLLW 355 (396)
Q Consensus 291 -----------ed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~~g-eL~t--~fedh~l~ 355 (396)
++..|.++|+.|+++.+-..+|.+..-+|-|++|+.-.++.+. ++|++||+-. .|+- .+++-...
T Consensus 543 hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~s 622 (910)
T KOG1539|consen 543 HRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTS 622 (910)
T ss_pred eehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCCccee
Confidence 8999999999999999999999999999999999999999998 9999999876 4554 33333333
Q ss_pred CCCCCCCcEEEccCCc
Q 016020 356 HPDCNTNNIYITSDQD 371 (396)
Q Consensus 356 ~~~c~~n~~~it~~qd 371 (396)
....|++.+--|.--|
T Consensus 623 ls~SPngD~LAT~Hvd 638 (910)
T KOG1539|consen 623 LSFSPNGDFLATVHVD 638 (910)
T ss_pred eEECCCCCEEEEEEec
Confidence 3335555555444433
No 103
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=97.46 E-value=0.00042 Score=71.09 Aligned_cols=122 Identities=14% Similarity=0.179 Sum_probs=83.0
Q ss_pred EEEeecCCCeEEEEeccCceEEEEeccC--ceEEEEEcCCeEEEEEecCCCe----------------------------
Q 016020 200 VLTYSAQDSIYKVFDLKNYTMLYSISDK--HVQEIKISPGIMLLIFNRSSSH---------------------------- 249 (396)
Q Consensus 200 Ilt~~a~d~~YrVwdlknYs~lysIs~~--~VqEIkiSpg~~Ll~~q~~~~~---------------------------- 249 (396)
-+++.+-||.+|+|||..=.++..+.+. -|..|.++.+.++-+-+.. .+
T Consensus 81 ~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~~~~~tvgdDK-tvK~wk~~~~p~~tilg~s~~~gIdh~~~~ 159 (433)
T KOG0268|consen 81 TVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQTSFFTVGDDK-TVKQWKIDGPPLHTILGKSVYLGIDHHRKN 159 (433)
T ss_pred hhhccccCceEEEEehhhhhhhheeecccCceeeEEecccceEEecCCc-ceeeeeccCCcceeeecccccccccccccc
Confidence 3567788999999999999999999984 4999999987776444432 00
Q ss_pred -------eeeEEEEeecCcEEEEEEeecccCCccchhhhhcceeeEeecCCeeeEEEcccceEEE------ecccccCCC
Q 016020 250 -------VPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELME------VSRTEFMTP 316 (396)
Q Consensus 250 -------iplkIl~IetG~~l~s~~~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~------v~~t~~~~P 316 (396)
--+.|||.+--.++.++..--..-.-+-|.+.--+-|.....|.+|-+||++.++.++ =.++....|
T Consensus 160 ~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnP 239 (433)
T KOG0268|consen 160 SVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNP 239 (433)
T ss_pred ccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCc
Confidence 0133444444444444442211112267888777777788899999999999977655 234556667
Q ss_pred ceEEEe
Q 016020 317 SAFIFL 322 (396)
Q Consensus 317 sAFiFl 322 (396)
.||.|+
T Consensus 240 eafnF~ 245 (433)
T KOG0268|consen 240 EAFNFV 245 (433)
T ss_pred ccccee
Confidence 888873
No 104
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.44 E-value=0.0017 Score=64.39 Aligned_cols=144 Identities=14% Similarity=0.137 Sum_probs=111.8
Q ss_pred CceEEEEEcCC--eEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCc---cchhhhhcceeeEeecCCeeeEEEcc
Q 016020 227 KHVQEIKISPG--IMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVR 301 (396)
Q Consensus 227 ~~VqEIkiSpg--~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~ 301 (396)
+.+-++++|+. .++++.++ +..|+||| ++...+.+..+..|..+ ++..+.-++..|..+=|+.|++||..
T Consensus 61 D~LfdV~Wse~~e~~~~~a~G---DGSLrl~d--~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~ 135 (311)
T KOG0277|consen 61 DGLFDVAWSENHENQVIAASG---DGSLRLFD--LTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPN 135 (311)
T ss_pred cceeEeeecCCCcceEEEEec---CceEEEec--cCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCC
Confidence 55666777754 34444444 48899999 77666665544466666 89999999999999999999999999
Q ss_pred cceEEEecccccCCCceEEEee-cCeEEEEEEc-CeEEEEecccceee-eeccccccCCCC----CCCcEEEccCCcEEE
Q 016020 302 NAELMEVSRTEFMTPSAFIFLY-ENQLFLTFRN-RTVAVWNFRGELVT-SFEDHLLWHPDC----NTNNIYITSDQDLII 374 (396)
Q Consensus 302 ~~ki~~v~~t~~~~PsAFiFly-~~qLFLTfs~-gti~iWd~~geL~t-~fedh~l~~~~c----~~n~~~it~~qd~ii 374 (396)
..+-+.+-++|..-.....|.| ..+||.+.|. ++.++||++..=++ ++|-|.+=..-| ++.++-.|++-|=.|
T Consensus 136 r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~v 215 (311)
T KOG0277|consen 136 RPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLV 215 (311)
T ss_pred CCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceE
Confidence 9999999999999999999998 6778999887 89999999984222 599998655555 456677788777665
Q ss_pred E
Q 016020 375 S 375 (396)
Q Consensus 375 ~ 375 (396)
-
T Consensus 216 r 216 (311)
T KOG0277|consen 216 R 216 (311)
T ss_pred E
Confidence 4
No 105
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.38 E-value=0.029 Score=50.07 Aligned_cols=190 Identities=17% Similarity=0.177 Sum_probs=119.5
Q ss_pred CCCeE--EeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcE
Q 016020 187 WPGFV--EFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTV 262 (396)
Q Consensus 187 ~PgfV--EFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~ 262 (396)
..+.+ -..+ +|.+++. ..++....||.++++.+.+.+- .-.....+.++.+++.. .. + .+..+|.+||+.
T Consensus 25 ~~~~~~~~~~~-~~~v~~~-~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v~v~~-~~-~--~l~~~d~~tG~~ 98 (238)
T PF13360_consen 25 IGGPVATAVPD-GGRVYVA-SGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRVYVGT-SD-G--SLYALDAKTGKV 98 (238)
T ss_dssp CSSEEETEEEE-TTEEEEE-ETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEEEEEE-TT-S--EEEEEETTTSCE
T ss_pred CCCccceEEEe-CCEEEEE-cCCCEEEEEECCCCCEEEEeeccccccceeeeccccccccc-ce-e--eeEecccCCcce
Confidence 45555 4422 4777775 4889999999999998877774 22222356666665555 22 2 788899999999
Q ss_pred EEEEEeecccC-C---ccchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCC-----------ceEEEeecCeE
Q 016020 263 LKVFYHLLHRN-K---KVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTP-----------SAFIFLYENQL 327 (396)
Q Consensus 263 l~s~~~~L~~s-k---~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~P-----------sAFiFly~~qL 327 (396)
+-......... . .... ...++.+++.-.++.|..+|+.+|+++---+. .+++ .+-..+.++.+
T Consensus 99 ~W~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v 176 (238)
T PF13360_consen 99 LWSIYLTSSPPAGVRSSSSP-AVDGDRLYVGTSSGKLVALDPKTGKLLWKYPV-GEPRGSSPISSFSDINGSPVISDGRV 176 (238)
T ss_dssp EEEEEE-SSCTCSTB--SEE-EEETTEEEEEETCSEEEEEETTTTEEEEEEES-STT-SS--EEEETTEEEEEECCTTEE
T ss_pred eeeeccccccccccccccCc-eEecCEEEEEeccCcEEEEecCCCcEEEEeec-CCCCCCcceeeecccccceEEECCEE
Confidence 99853211000 0 0111 11378899999999999999999999654333 2222 24444556677
Q ss_pred EEEEEcC-eEEEEeccc-ceeeeeccccccC-CCCCCCcEEEccCCcEEEEeccCCCCCcc
Q 016020 328 FLTFRNR-TVAVWNFRG-ELVTSFEDHLLWH-PDCNTNNIYITSDQDLIISYCKAEPEDQW 385 (396)
Q Consensus 328 FLTfs~g-ti~iWd~~g-eL~t~fedh~l~~-~~c~~n~~~it~~qd~ii~~~~~~~~~~~ 385 (396)
|++-.+| .+.+ |+.. +.+-+..-+-... +.-.++.+|++..+.-++++=.+.+.-.|
T Consensus 177 ~~~~~~g~~~~~-d~~tg~~~w~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 177 YVSSGDGRVVAV-DLATGEKLWSKPISGIYSLPSVDGGTLYVTSSDGRLYALDLKTGKVVW 236 (238)
T ss_dssp EEECCTSSEEEE-ETTTTEEEEEECSS-ECECEECCCTEEEEEETTTEEEEEETTTTEEEE
T ss_pred EEEcCCCeEEEE-ECCCCCEEEEecCCCccCCceeeCCEEEEEeCCCEEEEEECCCCCEEe
Confidence 8877777 5777 8887 4333222222333 56778889988866766666555555444
No 106
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=97.35 E-value=0.0033 Score=63.58 Aligned_cols=157 Identities=14% Similarity=0.176 Sum_probs=116.7
Q ss_pred eEEeeCCCCcEEEeecCCCeEEEEeccCce------------EEEEeccCceEEEEEcC--------CeEEEEEecCCCe
Q 016020 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYT------------MLYSISDKHVQEIKISP--------GIMLLIFNRSSSH 249 (396)
Q Consensus 190 fVEFDd~NgkIlt~~a~d~~YrVwdlknYs------------~lysIs~~~VqEIkiSp--------g~~Ll~~q~~~~~ 249 (396)
-...|.+-|+-+.+.+.|+.+-||||+|-+ ++.--.+++++...|+. |++ +..+ =+
T Consensus 48 sL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmF--tssS--FD 123 (397)
T KOG4283|consen 48 SLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMF--TSSS--FD 123 (397)
T ss_pred eeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCcee--eccc--cc
Confidence 357899999999999999999999999755 23233346666666663 332 2222 25
Q ss_pred eeeEEEEeecCcEEEEEEe----ecccCCccchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecC
Q 016020 250 VPLKILSIEDGTVLKVFYH----LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYEN 325 (396)
Q Consensus 250 iplkIl~IetG~~l~s~~~----~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~ 325 (396)
-.||+||..|-++.+.|+. --|+-.+|. --+=.|..+-.|..+|.-|+.+|...+++-+|-.-.-|.=..|-+
T Consensus 124 htlKVWDtnTlQ~a~~F~me~~VYshamSp~a---~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~ 200 (397)
T KOG4283|consen 124 HTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMA---MSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSS 200 (397)
T ss_pred ceEEEeecccceeeEEeecCceeehhhcChhh---hcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCc
Confidence 7899999999999999882 112222232 124456667799999999999999999999999999999999988
Q ss_pred eEEEEEEc--CeEEEEecccc--eeeeecccc
Q 016020 326 QLFLTFRN--RTVAVWNFRGE--LVTSFEDHL 353 (396)
Q Consensus 326 qLFLTfs~--gti~iWd~~ge--L~t~fedh~ 353 (396)
+..|.--+ |.|++||.+-. -...++.|.
T Consensus 201 e~vLatgsaDg~irlWDiRrasgcf~~lD~hn 232 (397)
T KOG4283|consen 201 EWVLATGSADGAIRLWDIRRASGCFRVLDQHN 232 (397)
T ss_pred eeEEEecCCCceEEEEEeecccceeEEeeccc
Confidence 88665543 99999999863 444567776
No 107
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=97.34 E-value=0.0009 Score=69.36 Aligned_cols=151 Identities=17% Similarity=0.233 Sum_probs=115.9
Q ss_pred ecccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceE---------EEEeccCceEEEEEcCCeEEEEEecCCCeeee
Q 016020 182 SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM---------LYSISDKHVQEIKISPGIMLLIFNRSSSHVPL 252 (396)
Q Consensus 182 ~~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~---------lysIs~~~VqEIkiSpg~~Ll~~q~~~~~ipl 252 (396)
...|.|+-+.++ . |+..++|+.+.+||+..|.. .|+=-...|-++++.+-+-- ++......-.|
T Consensus 180 g~glsWn~~~~g-----~-Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~-lF~sv~dd~~L 252 (422)
T KOG0264|consen 180 GYGLSWNRQQEG-----T-LLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHED-LFGSVGDDGKL 252 (422)
T ss_pred ccccccccccce-----e-EeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchh-hheeecCCCeE
Confidence 455777766543 3 45568899999999999986 33333478889999876543 34455567899
Q ss_pred EEEEeec--CcEEEEEEeecccCCc---cchhhhhcceee-EeecCCeeeEEEccc-ceEEEecccccCCCceEEEeecC
Q 016020 253 KILSIED--GTVLKVFYHLLHRNKK---VDFIEQFNEKLL-VKQENENLQILDVRN-AELMEVSRTEFMTPSAFIFLYEN 325 (396)
Q Consensus 253 kIl~Iet--G~~l~s~~~~L~~sk~---i~FiE~~~ekLL-IKQed~~L~I~Dv~~-~ki~~v~~t~~~~PsAFiFly~~ 325 (396)
.|||+-+ -+..+... +|+.+ +.|.+ +++.|| ...-|+.+.+||+|+ .+...+...|....-..-|+|.+
T Consensus 253 ~iwD~R~~~~~~~~~~~---ah~~~vn~~~fnp-~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~ 328 (422)
T KOG0264|consen 253 MIWDTRSNTSKPSHSVK---AHSAEVNCVAFNP-FNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHN 328 (422)
T ss_pred EEEEcCCCCCCCccccc---ccCCceeEEEeCC-CCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCC
Confidence 9999995 44444444 77777 88988 666665 555699999999999 77788888998888888899999
Q ss_pred eEEEEEEc--CeEEEEeccc
Q 016020 326 QLFLTFRN--RTVAVWNFRG 343 (396)
Q Consensus 326 qLFLTfs~--gti~iWd~~g 343 (396)
+=.|..|. |.+-|||+.-
T Consensus 329 etvLASSg~D~rl~vWDls~ 348 (422)
T KOG0264|consen 329 ETVLASSGTDRRLNVWDLSR 348 (422)
T ss_pred CceeEecccCCcEEEEeccc
Confidence 98888776 9999999875
No 108
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=97.33 E-value=0.001 Score=72.38 Aligned_cols=145 Identities=17% Similarity=0.317 Sum_probs=115.1
Q ss_pred CCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCC
Q 016020 197 NGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNK 274 (396)
Q Consensus 197 NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk 274 (396)
+|+++. ...|.++-||.+-+-..+|.+.+ -+|-.+-+-..-. |++.+- +-.++||-+ |+..+++. +|+.
T Consensus 71 ~~~l~~-g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSW--D~TakvW~~--~~l~~~l~---gH~a 141 (745)
T KOG0301|consen 71 KGRLVV-GGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSW--DSTAKVWRI--GELVYSLQ---GHTA 141 (745)
T ss_pred CcceEe-ecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEeccc--ccceEEecc--hhhhcccC---Ccch
Confidence 566665 57899999999999999999988 7888887654433 567666 678899976 44555544 7777
Q ss_pred c---cchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc-CeEEEEecccceeeeec
Q 016020 275 K---VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNFRGELVTSFE 350 (396)
Q Consensus 275 ~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~~geL~t~fe 350 (396)
. +-+++-. +++.+.-|.+|++|.= +++.++..+|.+-+++..+++++. ||+.+| |.|+.||..|+.+-...
T Consensus 142 sVWAv~~l~e~--~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~-flScsNDg~Ir~w~~~ge~l~~~~ 216 (745)
T KOG0301|consen 142 SVWAVASLPEN--TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSH-FLSCSNDGSIRLWDLDGEVLLEMH 216 (745)
T ss_pred heeeeeecCCC--cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCC-eEeecCCceEEEEeccCceeeeee
Confidence 7 3333312 8889999999999986 889999999999999999999876 788888 99999999999877777
Q ss_pred ccccc
Q 016020 351 DHLLW 355 (396)
Q Consensus 351 dh~l~ 355 (396)
+|-.+
T Consensus 217 ghtn~ 221 (745)
T KOG0301|consen 217 GHTNF 221 (745)
T ss_pred ccceE
Confidence 77544
No 109
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.32 E-value=0.0038 Score=65.18 Aligned_cols=139 Identities=19% Similarity=0.266 Sum_probs=101.9
Q ss_pred eeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCC-eEEEEEecCCCeeeeEEEEeec----------
Q 016020 193 FDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPG-IMLLIFNRSSSHVPLKILSIED---------- 259 (396)
Q Consensus 193 FDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg-~~Ll~~q~~~~~iplkIl~Iet---------- 259 (396)
+.-..--|||+.+.|+++++|||.+.++--+|.+ +.||.++|-|- -..|+...- +..++|.|..+
T Consensus 251 ~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~--D~~V~l~D~R~~~~s~~~wk~ 328 (463)
T KOG0270|consen 251 WNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSY--DGTVALKDCRDPSNSGKEWKF 328 (463)
T ss_pred hccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccc--cceEEeeeccCccccCceEEe
Confidence 3444556999999999999999999999999985 99999999853 233344444 45666667663
Q ss_pred -CcEEEEEEeecccCCccchhhhhcceeeEeecCCeeeEEEcccc-eEEEecccccCCCceEEEeecC-eEEEEEEc-Ce
Q 016020 260 -GTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNA-ELMEVSRTEFMTPSAFIFLYEN-QLFLTFRN-RT 335 (396)
Q Consensus 260 -G~~l~s~~~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~-ki~~v~~t~~~~PsAFiFly~~-qLFLTfs~-gt 335 (396)
|++.+-+- .+ -.....++.-+|+.|+=+|+|+. +.+-+..+|....+..-+.... .+..|.+. ++
T Consensus 329 ~g~VEkv~w---~~--------~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~ 397 (463)
T KOG0270|consen 329 DGEVEKVAW---DP--------HSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKV 397 (463)
T ss_pred ccceEEEEe---cC--------CCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccce
Confidence 33322221 11 11234566679999999999994 9999999999999999887644 45555555 89
Q ss_pred EEEEecccc
Q 016020 336 VAVWNFRGE 344 (396)
Q Consensus 336 i~iWd~~ge 344 (396)
+++|+|.+.
T Consensus 398 Vklw~~~~~ 406 (463)
T KOG0270|consen 398 VKLWKFDVD 406 (463)
T ss_pred EEEEeecCC
Confidence 999999994
No 110
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=97.32 E-value=0.0028 Score=58.10 Aligned_cols=119 Identities=14% Similarity=0.217 Sum_probs=89.1
Q ss_pred eEEeeCCCCcE-EEeecCCCeEEEEeccCceEEEEeccCceEEEEEcCCeEEEEEec-CCCeeeeEEEEeecCcEEEEEE
Q 016020 190 FVEFDDVNGKV-LTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNR-SSSHVPLKILSIEDGTVLKVFY 267 (396)
Q Consensus 190 fVEFDd~NgkI-lt~~a~d~~YrVwdlknYs~lysIs~~~VqEIkiSpg~~Ll~~q~-~~~~iplkIl~IetG~~l~s~~ 267 (396)
=|.+.+.+.+. +.+...++.+++||++ .+.++++....+..|++||.-.+++... .+...-|.+||+++.+.+..+.
T Consensus 64 ~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~ 142 (194)
T PF08662_consen 64 DVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFGTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE 142 (194)
T ss_pred EEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeecCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc
Confidence 46677744443 3445567799999997 8899999988899999997654445444 3334679999999999999888
Q ss_pred eecccCCccchhhhhcceeeEee------cCCeeeEEEcccceEEEecccc
Q 016020 268 HLLHRNKKVDFIEQFNEKLLVKQ------ENENLQILDVRNAELMEVSRTE 312 (396)
Q Consensus 268 ~~L~~sk~i~FiE~~~ekLLIKQ------ed~~L~I~Dv~~~ki~~v~~t~ 312 (396)
+. ....++|.+ .|.+++.-- .|.-++||+..-+.+.+.+-.+
T Consensus 143 ~~--~~t~~~WsP-dGr~~~ta~t~~r~~~dng~~Iw~~~G~~l~~~~~~~ 190 (194)
T PF08662_consen 143 HS--DATDVEWSP-DGRYLATATTSPRLRVDNGFKIWSFQGRLLYKKPFDE 190 (194)
T ss_pred cC--cEEEEEEcC-CCCEEEEEEeccceeccccEEEEEecCeEeEecchhh
Confidence 53 345699999 999999865 5788999998666555554443
No 111
>PRK03629 tolB translocation protein TolB; Provisional
Probab=97.32 E-value=0.02 Score=58.23 Aligned_cols=150 Identities=13% Similarity=0.152 Sum_probs=95.0
Q ss_pred eEEeeCCCCcEEEeec---CCCeEEEEeccCce--EEEEeccCceEEEEEcCCe-EEEEEecCCCeeeeEEEEeecCcEE
Q 016020 190 FVEFDDVNGKVLTYSA---QDSIYKVFDLKNYT--MLYSISDKHVQEIKISPGI-MLLIFNRSSSHVPLKILSIEDGTVL 263 (396)
Q Consensus 190 fVEFDd~NgkIlt~~a---~d~~YrVwdlknYs--~lysIs~~~VqEIkiSpg~-~Ll~~q~~~~~iplkIl~IetG~~l 263 (396)
...|++ +|+.|+|-+ .+..+.+||+.+.+ .+-... ..+...+|||+- .|++........-+.++++++|+..
T Consensus 203 ~p~wSP-DG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~-~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~ 280 (429)
T PRK03629 203 SPAWSP-DGSKLAYVTFESGRSALVIQTLANGAVRQVASFP-RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR 280 (429)
T ss_pred eeEEcC-CCCEEEEEEecCCCcEEEEEECCCCCeEEccCCC-CCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE
Confidence 456777 788888743 35678899998875 333333 446679999664 4444434444456888999998764
Q ss_pred EEEEeecccCCccchhhhhcceeeEeec-CCeeeEE--EcccceEEEecccccCCCceEEEeecCeEEEEEEc----CeE
Q 016020 264 KVFYHLLHRNKKVDFIEQFNEKLLVKQE-NENLQIL--DVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN----RTV 336 (396)
Q Consensus 264 ~s~~~~L~~sk~i~FiE~~~ekLLIKQe-d~~L~I~--Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~----gti 336 (396)
.-+... .....+.|.+ .|++|+.-.+ ++..+|| |+.+++...+.. .........|+++++.++..+. ..|
T Consensus 281 ~lt~~~-~~~~~~~wSP-DG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~-~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I 357 (429)
T PRK03629 281 QVTDGR-SNNTEPTWFP-DSQNLAYTSDQAGRPQVYKVNINGGAPQRITW-EGSQNQDADVSSDGKFMVMVSSNGGQQHI 357 (429)
T ss_pred EccCCC-CCcCceEECC-CCCEEEEEeCCCCCceEEEEECCCCCeEEeec-CCCCccCEEECCCCCEEEEEEccCCCceE
Confidence 433211 1123477887 8888877664 4455666 777777766532 2223456778999887655443 257
Q ss_pred EEEecccc
Q 016020 337 AVWNFRGE 344 (396)
Q Consensus 337 ~iWd~~ge 344 (396)
.+||+++.
T Consensus 358 ~~~dl~~g 365 (429)
T PRK03629 358 AKQDLATG 365 (429)
T ss_pred EEEECCCC
Confidence 88998873
No 112
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.32 E-value=0.12 Score=50.39 Aligned_cols=251 Identities=14% Similarity=0.112 Sum_probs=140.5
Q ss_pred eeccchhhhhhccccceeeeccccceEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCC-
Q 016020 95 VAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKP- 173 (396)
Q Consensus 95 v~a~dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~- 173 (396)
+...+.|++-...|.-.|+|..||+.+=..... +++.-+.... ++.+++.+ .+ ..|.|--. +.|+.
T Consensus 102 ~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~p~v~--~~~v~v~~---~~--g~l~a~d~-----~tG~~~ 168 (377)
T TIGR03300 102 GADGGLVFVGTEKGEVIALDAEDGKELWRAKLS-SEVLSPPLVA--NGLVVVRT---ND--GRLTALDA-----ATGERL 168 (377)
T ss_pred EEcCCEEEEEcCCCEEEEEECCCCcEeeeeccC-ceeecCCEEE--CCEEEEEC---CC--CeEEEEEc-----CCCcee
Confidence 345777888888999999999999876544432 3333222221 24444422 11 23443322 22222
Q ss_pred ---CCCCcceeecccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEeccC------c-------eEEEEEcCC
Q 016020 174 ---DSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK------H-------VQEIKISPG 237 (396)
Q Consensus 174 ---~~~~~LF~~~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~~------~-------VqEIkiSpg 237 (396)
....+-+.-.....|... + |.++ ....++.+..+|+++.+.+++.+-. + .....+.++
T Consensus 169 W~~~~~~~~~~~~~~~sp~~~---~--~~v~-~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~ 242 (377)
T TIGR03300 169 WTYSRVTPALTLRGSASPVIA---D--GGVL-VGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGG 242 (377)
T ss_pred eEEccCCCceeecCCCCCEEE---C--CEEE-EECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECC
Confidence 000111110111234332 1 3333 3344567777788888777654310 0 011223455
Q ss_pred eEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCccchhhhhcceeeEeecCCeeeEEEcccceEEEec-cc-ccCC
Q 016020 238 IMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVS-RT-EFMT 315 (396)
Q Consensus 238 ~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~-~t-~~~~ 315 (396)
.+++... .-.+..+|.+||+.+-.... .... ... ..+++|++...++.|.++|..+++++--. .. ....
T Consensus 243 ~vy~~~~----~g~l~a~d~~tG~~~W~~~~--~~~~--~p~-~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ 313 (377)
T TIGR03300 243 QVYAVSY----QGRVAALDLRSGRVLWKRDA--SSYQ--GPA-VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQL 313 (377)
T ss_pred EEEEEEc----CCEEEEEECCCCcEEEeecc--CCcc--Cce-EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCcc
Confidence 4443322 24688899999998887662 1111 111 36889999999999999999999876321 11 1111
Q ss_pred CceEEEeecCeEEEEEEcCeEEEEecc-cceeeeecccc---ccCCCCCCCcEEEccCCcEEEE
Q 016020 316 PSAFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFEDHL---LWHPDCNTNNIYITSDQDLIIS 375 (396)
Q Consensus 316 PsAFiFly~~qLFLTfs~gti~iWd~~-geL~t~fedh~---l~~~~c~~n~~~it~~qd~ii~ 375 (396)
++ ..+.++.+|+.-.+|.+-+||.+ |+++.+++-+- ...|--.++++|+..+..-|.+
T Consensus 314 ss--p~i~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~~~l~v~~~dG~l~~ 375 (377)
T TIGR03300 314 TA--PAVVGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVVGDGLLVQTRDGDLYA 375 (377)
T ss_pred cc--CEEECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEECCEEEEEeCCceEEE
Confidence 11 12367788888788999999986 68877665322 3355567788888777655543
No 113
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=97.30 E-value=0.007 Score=64.62 Aligned_cols=147 Identities=12% Similarity=0.203 Sum_probs=121.6
Q ss_pred EEeeCCCCcEEEeecCCCeEEEEeccCceEEEEeccC-----ceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEE
Q 016020 191 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK-----HVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKV 265 (396)
Q Consensus 191 VEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~~-----~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s 265 (396)
|+|.+ +|.-.|.-+.|+.+.+||=++.+++++|.++ .|--+.|||+.-=++..++ +...||||+.+++...+
T Consensus 196 VRysP-DG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~Sa--Dkt~KIWdVs~~slv~t 272 (603)
T KOG0318|consen 196 VRYSP-DGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSA--DKTIKIWDVSTNSLVST 272 (603)
T ss_pred EEECC-CCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecC--CceEEEEEeeccceEEE
Confidence 68999 6888888888999999999999999999963 4667899987777777777 79999999999988887
Q ss_pred EEeecccCCc---cchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc-CeEEEEec
Q 016020 266 FYHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNF 341 (396)
Q Consensus 266 ~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~ 341 (396)
+.. ..+-+ +-=+=| ++-|+.=.=++.|..++....+..++-.+|.-...|.--++++..+++-|. |.|-=||.
T Consensus 273 ~~~--~~~v~dqqvG~lWq-kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~ 349 (603)
T KOG0318|consen 273 WPM--GSTVEDQQVGCLWQ-KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDS 349 (603)
T ss_pred eec--CCchhceEEEEEEe-CCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEec
Confidence 762 22211 111222 667777778999999999999999999999999999999999999999998 99999996
Q ss_pred cc
Q 016020 342 RG 343 (396)
Q Consensus 342 ~g 343 (396)
..
T Consensus 350 ~~ 351 (603)
T KOG0318|consen 350 GS 351 (603)
T ss_pred CC
Confidence 43
No 114
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=97.29 E-value=0.009 Score=66.37 Aligned_cols=164 Identities=18% Similarity=0.336 Sum_probs=130.2
Q ss_pred cccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecC
Q 016020 183 ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDG 260 (396)
Q Consensus 183 ~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG 260 (396)
.+|.||.-- .| ||+. .+++|..++|+.++.+.+|+..+ ..|..|.=||-+=++.-.-. ...+.||++-.+
T Consensus 163 tal~HP~TY----LN-KIvv-Gs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~--~G~ViifNlK~d 234 (910)
T KOG1539|consen 163 TALLHPSTY----LN-KIVV-GSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLE--NGTVIIFNLKFD 234 (910)
T ss_pred eeEecchhh----ee-eEEE-eecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEecc--CceEEEEEcccC
Confidence 556666421 13 3333 37799999999999999999998 77888888887665444443 678999999999
Q ss_pred cEEEEEEeecccCCccchhhhhcceeeEee-cCCeeeEEEcccceEEEecc-cccCCCceEEEeecCeEEEEEEc-CeEE
Q 016020 261 TVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNAELMEVSR-TEFMTPSAFIFLYENQLFLTFRN-RTVA 337 (396)
Q Consensus 261 ~~l~s~~~~L~~sk~i~FiE~~~ekLLIKQ-ed~~L~I~Dv~~~ki~~v~~-t~~~~PsAFiFly~~qLFLTfs~-gti~ 337 (396)
+.+++|++.-++=..+-|-- +|+.+|.-. .++-+-+||+-.++++.+.+ .|+-.|-.-.|+++..+.+|-+- ++.+
T Consensus 235 kil~sFk~d~g~VtslSFrt-DG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk 313 (910)
T KOG1539|consen 235 KILMSFKQDWGRVTSLSFRT-DGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLK 313 (910)
T ss_pred cEEEEEEccccceeEEEecc-CCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCcee
Confidence 99999998766667788888 788887666 45889999999999999655 88899999999999999888776 8999
Q ss_pred EEeccc-----ceeeeecccccc
Q 016020 338 VWNFRG-----ELVTSFEDHLLW 355 (396)
Q Consensus 338 iWd~~g-----eL~t~fedh~l~ 355 (396)
+|=|+. .+..+=++|.-+
T Consensus 314 ~~vfD~~dg~pR~LR~R~GHs~P 336 (910)
T KOG1539|consen 314 VWVFDSGDGVPRLLRSRGGHSAP 336 (910)
T ss_pred EEEeeCCCCcchheeeccCCCCC
Confidence 999983 366777777544
No 115
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.28 E-value=0.0013 Score=67.84 Aligned_cols=148 Identities=16% Similarity=0.238 Sum_probs=111.6
Q ss_pred CeEEeeCCCCcEEEeecCCCeEEEEeccCce-EEEEecc-CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEE-
Q 016020 189 GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT-MLYSISD-KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKV- 265 (396)
Q Consensus 189 gfVEFDd~NgkIlt~~a~d~~YrVwdlknYs-~lysIs~-~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s- 265 (396)
.-|-|.. +|..++.-..|++.|||+--+.+ .++++.. .+|.|+-|||+.-+|++-.+. ...||+.++|-.+.+
T Consensus 148 k~vaf~~-~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d---~~~VW~~~~g~~~a~~ 223 (398)
T KOG0771|consen 148 KVVAFNG-DGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD---SARVWSVNTGAALARK 223 (398)
T ss_pred eEEEEcC-CCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC---ceEEEEeccCchhhhc
Confidence 6677877 77888888999999999966666 5555555 899999999999888988884 899999999922211
Q ss_pred -------------------------EEe------------e--------cccCCc--------cchhhhhcceeeEeecC
Q 016020 266 -------------------------FYH------------L--------LHRNKK--------VDFIEQFNEKLLVKQEN 292 (396)
Q Consensus 266 -------------------------~~~------------~--------L~~sk~--------i~FiE~~~ekLLIKQed 292 (396)
+.. - .-+++- ++=.+ .|+++.++-.+
T Consensus 224 t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~-dGkf~AlGT~d 302 (398)
T KOG0771|consen 224 TPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSD-DGKFLALGTMD 302 (398)
T ss_pred CCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcC-CCcEEEEeccC
Confidence 110 0 000000 23233 78999999999
Q ss_pred CeeeEEEcccceE-EEecccccCCCceEEEeecCeEEEEEEc-CeEEEEec
Q 016020 293 ENLQILDVRNAEL-MEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNF 341 (396)
Q Consensus 293 ~~L~I~Dv~~~ki-~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~ 341 (396)
+++-||++.+=++ +.+++.|-+...+.-|+|+.+...+.|. .++.+--+
T Consensus 303 GsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l 353 (398)
T KOG0771|consen 303 GSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKL 353 (398)
T ss_pred CcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEE
Confidence 9999999999554 4599999999999999999999999887 45444333
No 116
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=97.27 E-value=0.0022 Score=66.07 Aligned_cols=151 Identities=17% Similarity=0.238 Sum_probs=108.9
Q ss_pred Eecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCccchhhhhcceeeEeecCCeeeEEEc
Q 016020 223 SISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDV 300 (396)
Q Consensus 223 sIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv 300 (396)
.|++ -=|.+|.+-||-..+....+ +-.+|||||++|+...++.=....-..+.|.. -.-||+..-||+-+++||+
T Consensus 146 Vi~gHlgWVr~vavdP~n~wf~tgs~--DrtikIwDlatg~LkltltGhi~~vr~vavS~-rHpYlFs~gedk~VKCwDL 222 (460)
T KOG0285|consen 146 VISGHLGWVRSVAVDPGNEWFATGSA--DRTIKIWDLATGQLKLTLTGHIETVRGVAVSK-RHPYLFSAGEDKQVKCWDL 222 (460)
T ss_pred hhhhccceEEEEeeCCCceeEEecCC--CceeEEEEcccCeEEEeecchhheeeeeeecc-cCceEEEecCCCeeEEEec
Confidence 3444 56889999999888888877 88899999999999888772223344577777 6789999999999999999
Q ss_pred ccceEEEecccccCCCceEEEeecCeEEEEE-EcCeEEEEeccc-ceeeeeccccccCCC--C-CCCcEEEccCCcEEEE
Q 016020 301 RNAELMEVSRTEFMTPSAFIFLYENQLFLTF-RNRTVAVWNFRG-ELVTSFEDHLLWHPD--C-NTNNIYITSDQDLIIS 375 (396)
Q Consensus 301 ~~~ki~~v~~t~~~~PsAFiFly~~qLFLTf-s~gti~iWd~~g-eL~t~fedh~l~~~~--c-~~n~~~it~~qd~ii~ 375 (396)
..+|.++---+|--.+.+.--.|+-.+.+|- +|-+++|||.+- .-|-.+.+|-..+-. | ++|--.||...|--|+
T Consensus 223 e~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvr 302 (460)
T KOG0285|consen 223 EYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVR 302 (460)
T ss_pred hhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEE
Confidence 9999886444443333343333444555555 447999999999 577788888777544 3 3455556666665554
Q ss_pred e
Q 016020 376 Y 376 (396)
Q Consensus 376 ~ 376 (396)
.
T Consensus 303 l 303 (460)
T KOG0285|consen 303 L 303 (460)
T ss_pred E
Confidence 3
No 117
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=97.27 E-value=0.026 Score=55.23 Aligned_cols=149 Identities=10% Similarity=0.101 Sum_probs=94.5
Q ss_pred EeeCCCCcEEEeecCC---CeEEEEeccCceEEEEe-ccCceEEEEEcCCe-EEEEEecCCCeeeeEEEEeecCcEEEEE
Q 016020 192 EFDDVNGKVLTYSAQD---SIYKVFDLKNYTMLYSI-SDKHVQEIKISPGI-MLLIFNRSSSHVPLKILSIEDGTVLKVF 266 (396)
Q Consensus 192 EFDd~NgkIlt~~a~d---~~YrVwdlknYs~lysI-s~~~VqEIkiSpg~-~Ll~~q~~~~~iplkIl~IetG~~l~s~ 266 (396)
.|.+ +|+-|+|...+ ..+.+||+.+.+..... .+..+..+++||+- .|++.....+..-+.++++.+|+...-+
T Consensus 196 ~~Sp-dg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~ 274 (417)
T TIGR02800 196 AWSP-DGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLT 274 (417)
T ss_pred cCCC-CCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEECC
Confidence 3666 78888887653 47999999987532211 12345668999764 4444444445566788899888754433
Q ss_pred EeecccCCccchhhhhcceeeEeec-CC--eeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc-C---eEEEE
Q 016020 267 YHLLHRNKKVDFIEQFNEKLLVKQE-NE--NLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN-R---TVAVW 339 (396)
Q Consensus 267 ~~~L~~sk~i~FiE~~~ekLLIKQe-d~--~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-g---ti~iW 339 (396)
.+. .....+.|.+ .+++|++-.+ ++ .|-++|+.+++...+.. +........|.+++++++..+. + .|.+|
T Consensus 275 ~~~-~~~~~~~~s~-dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~-~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~ 351 (417)
T TIGR02800 275 NGP-GIDTEPSWSP-DGKSIAFTSDRGGSPQIYMMDADGGEVRRLTF-RGGYNASPSWSPDGDLIAFVHREGGGFNIAVM 351 (417)
T ss_pred CCC-CCCCCEEECC-CCCEEEEEECCCCCceEEEEECCCCCEEEeec-CCCCccCeEECCCCCEEEEEEccCCceEEEEE
Confidence 311 1122457776 8889987654 33 56667888888766543 2344556778888776555444 3 78889
Q ss_pred ecccc
Q 016020 340 NFRGE 344 (396)
Q Consensus 340 d~~ge 344 (396)
|..+.
T Consensus 352 d~~~~ 356 (417)
T TIGR02800 352 DLDGG 356 (417)
T ss_pred eCCCC
Confidence 98873
No 118
>PRK03629 tolB translocation protein TolB; Provisional
Probab=97.24 E-value=0.055 Score=55.04 Aligned_cols=201 Identities=12% Similarity=0.123 Sum_probs=115.2
Q ss_pred eEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcceeecccCCCCeEEeeCCCCcEEEeecC-C--
Q 016020 131 VIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQ-D-- 207 (396)
Q Consensus 131 vIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF~~~~l~~PgfVEFDd~NgkIlt~~a~-d-- 207 (396)
.+.+.-++.....|.++|.. +.. ..+... ++..|+ .+.|..-. .+-+-+.|.+ +|+.|++... +
T Consensus 200 ~~~~p~wSPDG~~la~~s~~-~g~-~~i~i~-----dl~~G~---~~~l~~~~--~~~~~~~~SP-DG~~La~~~~~~g~ 266 (429)
T PRK03629 200 PLMSPAWSPDGSKLAYVTFE-SGR-SALVIQ-----TLANGA---VRQVASFP--RHNGAPAFSP-DGSKLAFALSKTGS 266 (429)
T ss_pred ceeeeEEcCCCCEEEEEEec-CCC-cEEEEE-----ECCCCC---eEEccCCC--CCcCCeEECC-CCCEEEEEEcCCCC
Confidence 45667777777777776632 222 233322 222222 12232110 1122368888 7887776533 3
Q ss_pred CeEEEEeccCceEEEEecc--CceEEEEEcCCeE-EEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCccchhhhhcc
Q 016020 208 SIYKVFDLKNYTMLYSISD--KHVQEIKISPGIM-LLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNE 284 (396)
Q Consensus 208 ~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~-Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~i~FiE~~~e 284 (396)
..+.+||+++.+. ..+.. ..+.+..|||+-- |++........-+-++++.+|+.. .+...-+....+.|.+ .|+
T Consensus 267 ~~I~~~d~~tg~~-~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~Sp-DG~ 343 (429)
T PRK03629 267 LNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQDADVSS-DGK 343 (429)
T ss_pred cEEEEEECCCCCE-EEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-EeecCCCCccCEEECC-CCC
Confidence 3588899988654 45554 4678999997643 333332222233444566666543 2221112223467776 888
Q ss_pred eeeEee-cC--CeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc-C---eEEEEecccceeeee
Q 016020 285 KLLVKQ-EN--ENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN-R---TVAVWNFRGELVTSF 349 (396)
Q Consensus 285 kLLIKQ-ed--~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-g---ti~iWd~~geL~t~f 349 (396)
+|+.-. ++ ..|.+||+.+++...+..+. .-....|+++++..+..+. + .+.+|+++|...+.+
T Consensus 344 ~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~--~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~~~l 413 (429)
T PRK03629 344 FMVMVSSNGGQQHIAKQDLATGGVQVLTDTF--LDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARL 413 (429)
T ss_pred EEEEEEccCCCceEEEEECCCCCeEEeCCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCCeEEC
Confidence 887643 33 45788999999887765432 2234568999987666665 3 378889999655544
No 119
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=97.24 E-value=0.00084 Score=72.97 Aligned_cols=169 Identities=17% Similarity=0.176 Sum_probs=116.4
Q ss_pred CcEEEeecCCCeEEEEeccCceEEEEecc---CceEEEEE----cCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeec
Q 016020 198 GKVLTYSAQDSIYKVFDLKNYTMLYSISD---KHVQEIKI----SPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLL 270 (396)
Q Consensus 198 gkIlt~~a~d~~YrVwdlknYs~lysIs~---~~VqEIki----Spg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L 270 (396)
+..+.+.+-|+++|||+-++-.-+-.-.- +++--..+ |++--|++... +--+-||....+.+++.|+
T Consensus 25 ~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~---D~~i~v~~~~~~~P~~~Lk--- 98 (745)
T KOG0301|consen 25 GVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGM---DTTIIVFKLSQAEPLYTLK--- 98 (745)
T ss_pred CeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecc---cceEEEEecCCCCchhhhh---
Confidence 33466667799999999876554432222 12111111 23322223333 3445599999999999988
Q ss_pred ccCCccchhhhhcce-eeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc-CeEEEEecccceeee
Q 016020 271 HRNKKVDFIEQFNEK-LLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNFRGELVTS 348 (396)
Q Consensus 271 ~~sk~i~FiE~~~ek-LLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~~geL~t~ 348 (396)
.|..-|+=+--+++- |+.++=|.+.+|| +.+++..+..+|....-|..+++++ .|||-|- .+|++|.- |.++.+
T Consensus 99 gH~snVC~ls~~~~~~~iSgSWD~TakvW--~~~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~-~~~l~t 174 (745)
T KOG0301|consen 99 GHKSNVCSLSIGEDGTLISGSWDSTAKVW--RIGELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG-GTLLKT 174 (745)
T ss_pred ccccceeeeecCCcCceEecccccceEEe--cchhhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC-Cchhhh
Confidence 777776544433333 5889999999999 5578888899999999999999999 9999887 89999987 788888
Q ss_pred eccccccCCC-C-CCCcEEEccCCcEEEEe
Q 016020 349 FEDHLLWHPD-C-NTNNIYITSDQDLIISY 376 (396)
Q Consensus 349 fedh~l~~~~-c-~~n~~~it~~qd~ii~~ 376 (396)
|.+|.-.+-- | -+++.|+|.+.|=+|=.
T Consensus 175 f~gHtD~VRgL~vl~~~~flScsNDg~Ir~ 204 (745)
T KOG0301|consen 175 FSGHTDCVRGLAVLDDSHFLSCSNDGSIRL 204 (745)
T ss_pred hccchhheeeeEEecCCCeEeecCCceEEE
Confidence 9887644322 2 24447777776665543
No 120
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=97.23 E-value=0.035 Score=57.23 Aligned_cols=180 Identities=12% Similarity=0.123 Sum_probs=134.9
Q ss_pred eeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeec
Q 016020 193 FDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLL 270 (396)
Q Consensus 193 FDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L 270 (396)
.+| |-..++....|.-=-||+..+..++|++.+ +-|.++-||-+-.+|....- ...++||...+|+..-++.
T Consensus 72 l~P-~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdm--sG~v~v~~~stg~~~~~~~--- 145 (399)
T KOG0296|consen 72 LHP-NNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDM--SGKVLVFKVSTGGEQWKLD--- 145 (399)
T ss_pred eCC-CCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCC--CccEEEEEcccCceEEEee---
Confidence 345 788888899999999999999999999999 99999999977776676665 5778999999999988775
Q ss_pred ccCCccchhh--hhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc-CeEEEEeccc-c-e
Q 016020 271 HRNKKVDFIE--QFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNFRG-E-L 345 (396)
Q Consensus 271 ~~sk~i~FiE--~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~~g-e-L 345 (396)
..-.+|..+. +-.--||-+.+|+++=.|.+-++..-+|-.+|.-+-.+=-|.|+++..+|..+ |+|.+||.-- + +
T Consensus 146 ~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~ 225 (399)
T KOG0296|consen 146 QEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPL 225 (399)
T ss_pred cccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCcee
Confidence 2223333332 24556889999999999999998888888999999999999999999888877 9999999865 4 3
Q ss_pred ee-eeccccccCCC--CCCCcEEEccCCcEEEEecc
Q 016020 346 VT-SFEDHLLWHPD--CNTNNIYITSDQDLIISYCK 378 (396)
Q Consensus 346 ~t-~fedh~l~~~~--c~~n~~~it~~qd~ii~~~~ 378 (396)
-+ +-.+|...+.. --.....++..-|--++.|+
T Consensus 226 ~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~ 261 (399)
T KOG0296|consen 226 HKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVN 261 (399)
T ss_pred EEecccccCcCCccccccccceeEeccCCccEEEEc
Confidence 22 33335444333 33333444444444444443
No 121
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.22 E-value=0.012 Score=62.46 Aligned_cols=192 Identities=14% Similarity=0.108 Sum_probs=149.3
Q ss_pred CCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEE-ecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEE
Q 016020 187 WPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYS-ISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVL 263 (396)
Q Consensus 187 ~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lys-Is~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l 263 (396)
|.+.|-==+=|+.+++....++.+.++|++.-+.+.+ +.+ ++|--+++|++...+..... +=-+.|||..+-+.+
T Consensus 259 h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgn--DN~~~Iwd~~~~~p~ 336 (484)
T KOG0305|consen 259 HASRVGSLAWNSSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGN--DNVVFIWDGLSPEPK 336 (484)
T ss_pred cCceeEEEeccCceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCC--ccceEeccCCCcccc
Confidence 4554443344689999999999999999999997777 433 88889999999988777776 566789999887887
Q ss_pred EEEEeecccCCccchhhhhcceeeEe--ecCCeeeEEEcccceEEEecccccCCCceEEEeecC-eEEEEE--EcCeEEE
Q 016020 264 KVFYHLLHRNKKVDFIEQFNEKLLVK--QENENLQILDVRNAELMEVSRTEFMTPSAFIFLYEN-QLFLTF--RNRTVAV 338 (396)
Q Consensus 264 ~s~~~~L~~sk~i~FiE~~~ekLLIK--Qed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~-qLFLTf--s~gti~i 338 (396)
..+.-..+.-|=++|-+-+.+-|.++ ..|.-|++||+.+++.+.-..|. -+....+++... |+..|+ +.+.|.|
T Consensus 337 ~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtg-sQVcsL~Wsk~~kEi~sthG~s~n~i~l 415 (484)
T KOG0305|consen 337 FTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTG-SQVCSLIWSKKYKELLSTHGYSENQITL 415 (484)
T ss_pred EEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccC-CceeeEEEcCCCCEEEEecCCCCCcEEE
Confidence 77663334445599999888888886 48999999999999999866555 567888888855 776665 4489999
Q ss_pred Eeccc-ceeeeeccccccCCC---CCCCcEEEccCCcEEEEeccCCC
Q 016020 339 WNFRG-ELVTSFEDHLLWHPD---CNTNNIYITSDQDLIISYCKAEP 381 (396)
Q Consensus 339 Wd~~g-eL~t~fedh~l~~~~---c~~n~~~it~~qd~ii~~~~~~~ 381 (396)
|+... .+++.+-.|..-+.. .||+...+|+.-|==+.+-+--+
T Consensus 416 w~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 416 WKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFD 462 (484)
T ss_pred EeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccC
Confidence 99988 788899888765544 77888888887776666665544
No 122
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=97.20 E-value=0.001 Score=73.89 Aligned_cols=154 Identities=14% Similarity=0.178 Sum_probs=109.0
Q ss_pred eEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcceee--cccCCCCeEEeeCCCCcEEEeecCCC
Q 016020 131 VIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFES--ESLKWPGFVEFDDVNGKVLTYSAQDS 208 (396)
Q Consensus 131 vIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF~~--~~l~~PgfVEFDd~NgkIlt~~a~d~ 208 (396)
-+|.+-||-....+ +.+||+ -.+||-...-..... -+.. .... =+.||+ ||..||.++.||
T Consensus 98 p~r~~~v~g~g~~i----aagsdD-~~vK~~~~~D~s~~~--------~lrgh~apVl---~l~~~p-~~~fLAvss~dG 160 (933)
T KOG1274|consen 98 PIRDLAVSGSGKMI----AAGSDD-TAVKLLNLDDSSQEK--------VLRGHDAPVL---QLSYDP-KGNFLAVSSCDG 160 (933)
T ss_pred cceEEEEecCCcEE----EeecCc-eeEEEEeccccchhe--------eecccCCcee---eeeEcC-CCCEEEEEecCc
Confidence 36677777543333 456777 456665443211111 1110 1111 378999 999999999999
Q ss_pred eEEEEeccCceEEEEecc-----Cc-----eEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCc--c
Q 016020 209 IYKVFDLKNYTMLYSISD-----KH-----VQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKK--V 276 (396)
Q Consensus 209 ~YrVwdlknYs~lysIs~-----~~-----VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~--i 276 (396)
.++|||+.+.+....+.+ +. +-..+|+|..-=++.-+. .-.+|+++..++++++.+.-.+++++. +
T Consensus 161 ~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~--d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~ 238 (933)
T KOG1274|consen 161 KVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPV--DNTVKVYSRKGWELQFKLRDKLSSSKFSDL 238 (933)
T ss_pred eEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeecc--CCeEEEEccCCceeheeecccccccceEEE
Confidence 999999999999998887 22 245677776332233334 356899999999999998877777755 9
Q ss_pred chhhhhcceeeEeecCCeeeEEEcccce
Q 016020 277 DFIEQFNEKLLVKQENENLQILDVRNAE 304 (396)
Q Consensus 277 ~FiE~~~ekLLIKQed~~L~I~Dv~~~k 304 (396)
+|.+ -|+||.-.--|+-|-|||+.+.+
T Consensus 239 ~wsP-nG~YiAAs~~~g~I~vWnv~t~~ 265 (933)
T KOG1274|consen 239 QWSP-NGKYIAASTLDGQILVWNVDTHE 265 (933)
T ss_pred EEcC-CCcEEeeeccCCcEEEEecccch
Confidence 9999 59999999999999999999633
No 123
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.18 E-value=0.0026 Score=66.38 Aligned_cols=150 Identities=15% Similarity=0.139 Sum_probs=117.2
Q ss_pred CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCc---cchhhhhcceeeEeecCCeeeEEEcccc
Q 016020 227 KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNA 303 (396)
Q Consensus 227 ~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ 303 (396)
++||-+++|++=--|.+... +-..-||.+-.-.+++-..-+..|..+ |-|.+ +.-|||.=-.++.+..||+-+|
T Consensus 225 dEVWfl~FS~nGkyLAsaSk--D~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSP-DdryLlaCg~~e~~~lwDv~tg 301 (519)
T KOG0293|consen 225 DEVWFLQFSHNGKYLASASK--DSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSP-DDRYLLACGFDEVLSLWDVDTG 301 (519)
T ss_pred CcEEEEEEcCCCeeEeeccC--CceEEEEEEecCcceeeeeeeecccCceEEEEECC-CCCeEEecCchHheeeccCCcc
Confidence 78999999966555555544 677788888877775544445577777 55666 8899999999999999999999
Q ss_pred eEEE-ecccccCCCceEEEeecCeEEEEEEc-CeEEEEecccceeeeecccc---ccCCC-CCCCcEEEccCCcEEEEec
Q 016020 304 ELME-VSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNFRGELVTSFEDHL---LWHPD-CNTNNIYITSDQDLIISYC 377 (396)
Q Consensus 304 ki~~-v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~~geL~t~fedh~---l~~~~-c~~n~~~it~~qd~ii~~~ 377 (396)
++.. .+.++.+++++-...||+.-|+|=+- |+|--||++|++..+-|+-. .|-.- ++|++.-++-+.|=-|.-+
T Consensus 302 d~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~ 381 (519)
T KOG0293|consen 302 DLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLY 381 (519)
T ss_pred hhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEecccceeee
Confidence 9988 66677899999999999999999887 99999999999888877765 33222 7788877777766555555
Q ss_pred cC
Q 016020 378 KA 379 (396)
Q Consensus 378 ~~ 379 (396)
+-
T Consensus 382 ~~ 383 (519)
T KOG0293|consen 382 NR 383 (519)
T ss_pred ch
Confidence 43
No 124
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=97.17 E-value=0.0011 Score=70.43 Aligned_cols=72 Identities=22% Similarity=0.370 Sum_probs=53.4
Q ss_pred hcceeeEeecCCeeeEEEcccceEEEecccccCCCc--eEEEeecCeE-EEEEEcCeEEEEecccc-eeeeecccc
Q 016020 282 FNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPS--AFIFLYENQL-FLTFRNRTVAVWNFRGE-LVTSFEDHL 353 (396)
Q Consensus 282 ~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~Ps--AFiFly~~qL-FLTfs~gti~iWd~~ge-L~t~fedh~ 353 (396)
.+--|+++-|.++|-|||+..-....-...-...|. |.-.++|.++ |-.+++|.|.|||++-+ +|..|-+|-
T Consensus 476 dgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGht 551 (705)
T KOG0639|consen 476 DGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHT 551 (705)
T ss_pred CCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCC
Confidence 788999999999999999998554432222222233 3334667776 77788899999999996 888998874
No 125
>PRK04922 tolB translocation protein TolB; Provisional
Probab=97.16 E-value=0.041 Score=55.62 Aligned_cols=152 Identities=11% Similarity=0.164 Sum_probs=92.4
Q ss_pred eEEeeCCCCcEEEee-cC--CCeEEEEeccCceEEEEeccC--ceEEEEEcCC-eEEEEEecCCCeeeeEEEEeecCcEE
Q 016020 190 FVEFDDVNGKVLTYS-AQ--DSIYKVFDLKNYTMLYSISDK--HVQEIKISPG-IMLLIFNRSSSHVPLKILSIEDGTVL 263 (396)
Q Consensus 190 fVEFDd~NgkIlt~~-a~--d~~YrVwdlknYs~lysIs~~--~VqEIkiSpg-~~Ll~~q~~~~~iplkIl~IetG~~l 263 (396)
.+.|++ +|+-+++. .. +..+.+||+.+.+ +..++.. ...+..+||+ -.|++........-+-++++.+|+..
T Consensus 252 ~~~~Sp-DG~~l~~~~s~~g~~~Iy~~d~~~g~-~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~ 329 (433)
T PRK04922 252 APSFSP-DGRRLALTLSRDGNPEIYVMDLGSRQ-LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAE 329 (433)
T ss_pred CceECC-CCCEEEEEEeCCCCceEEEEECCCCC-eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeE
Confidence 457888 56644433 22 3468899998876 3456542 3467899974 34433332222334556677777643
Q ss_pred EEEEeecccCCccchhhhhcceeeEee-cCC--eeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc----CeE
Q 016020 264 KVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENE--NLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN----RTV 336 (396)
Q Consensus 264 ~s~~~~L~~sk~i~FiE~~~ekLLIKQ-ed~--~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~----gti 336 (396)
. +..--.....+.|.+ .|++|+.-. +++ .|.+||+.+++...+.... ......|.++++.++..++ +.+
T Consensus 330 ~-lt~~g~~~~~~~~Sp-DG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~~~--~~~~p~~spdG~~i~~~s~~~g~~~L 405 (433)
T PRK04922 330 R-LTFQGNYNARASVSP-DGKKIAMVHGSGGQYRIAVMDLSTGSVRTLTPGS--LDESPSFAPNGSMVLYATREGGRGVL 405 (433)
T ss_pred E-eecCCCCccCEEECC-CCCEEEEEECCCCceeEEEEECCCCCeEECCCCC--CCCCceECCCCCEEEEEEecCCceEE
Confidence 2 221112233478877 899987743 332 6899999999887654332 3345578999886555554 368
Q ss_pred EEEecccceee
Q 016020 337 AVWNFRGELVT 347 (396)
Q Consensus 337 ~iWd~~geL~t 347 (396)
-+||.+|....
T Consensus 406 ~~~~~~g~~~~ 416 (433)
T PRK04922 406 AAVSTDGRVRQ 416 (433)
T ss_pred EEEECCCCceE
Confidence 88899885433
No 126
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=97.16 E-value=0.0029 Score=63.59 Aligned_cols=135 Identities=14% Similarity=0.245 Sum_probs=101.2
Q ss_pred cCceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCccchhhhhcceeeEeecCCeeeEEEcccceE
Q 016020 226 DKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAEL 305 (396)
Q Consensus 226 ~~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki 305 (396)
.+.|..|++||....|+...= +..|.++++..-.....+++- ++--.++|.. ...++++--|+.++.+|+-+++-
T Consensus 13 ~d~IS~v~f~~~~~~LLvssW--DgslrlYdv~~~~l~~~~~~~-~plL~c~F~d--~~~~~~G~~dg~vr~~Dln~~~~ 87 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSW--DGSLRLYDVPANSLKLKFKHG-APLLDCAFAD--ESTIVTGGLDGQVRRYDLNTGNE 87 (323)
T ss_pred hhceeeEEEcCcCCcEEEEec--cCcEEEEeccchhhhhheecC-CceeeeeccC--CceEEEeccCceEEEEEecCCcc
Confidence 488999999976665555554 688999999988555555532 3334488887 67899999999999999999876
Q ss_pred EEecccccCCCceEEEeecCeEEEEEEc-CeEEEEecccc-eeeeeccc-cccCCCCCCCcEEE
Q 016020 306 MEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNFRGE-LVTSFEDH-LLWHPDCNTNNIYI 366 (396)
Q Consensus 306 ~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~~ge-L~t~fedh-~l~~~~c~~n~~~i 366 (396)
..+ -+|....++..++|+...++|=++ ++|++||.+.. .+.++|.- --+..+-..|++.+
T Consensus 88 ~~i-gth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvV 150 (323)
T KOG1036|consen 88 DQI-GTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVV 150 (323)
T ss_pred eee-ccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEeccCCEEEE
Confidence 654 488899999999999999999998 89999999973 44455432 23333444555555
No 127
>PRK05137 tolB translocation protein TolB; Provisional
Probab=97.15 E-value=0.035 Score=56.01 Aligned_cols=149 Identities=11% Similarity=0.159 Sum_probs=96.9
Q ss_pred EEeeCCCCcEEEeecC---CCeEEEEeccCceEEEEecc--CceEEEEEcC-CeEEEEEecCCCeeeeEEEEeecCcEEE
Q 016020 191 VEFDDVNGKVLTYSAQ---DSIYKVFDLKNYTMLYSISD--KHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLK 264 (396)
Q Consensus 191 VEFDd~NgkIlt~~a~---d~~YrVwdlknYs~lysIs~--~~VqEIkiSp-g~~Ll~~q~~~~~iplkIl~IetG~~l~ 264 (396)
+.|.+ +|+.|+|.+. +..+.+||+.+... ..+++ ..+...+||| |-.|++.....+..-+-++++++|+...
T Consensus 207 p~wSp-DG~~lay~s~~~g~~~i~~~dl~~g~~-~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~ 284 (435)
T PRK05137 207 PRFSP-NRQEITYMSYANGRPRVYLLDLETGQR-ELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTR 284 (435)
T ss_pred eEECC-CCCEEEEEEecCCCCEEEEEECCCCcE-EEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEE
Confidence 45666 6888888653 57899999988764 23433 4566889996 5466666555555567777988887643
Q ss_pred EEEeecccCCccchhhhhcceeeEeecC---CeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc--C--eEE
Q 016020 265 VFYHLLHRNKKVDFIEQFNEKLLVKQEN---ENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN--R--TVA 337 (396)
Q Consensus 265 s~~~~L~~sk~i~FiE~~~ekLLIKQed---~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~--g--ti~ 337 (396)
-+.+ -.....+.|.+ .+++|++.... ..|-++|+.+++...+.... .......|+++++..+..+. + .|.
T Consensus 285 Lt~~-~~~~~~~~~sp-DG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~-~~~~~~~~SpdG~~ia~~~~~~~~~~i~ 361 (435)
T PRK05137 285 LTDS-PAIDTSPSYSP-DGSQIVFESDRSGSPQLYVMNADGSNPRRISFGG-GRYSTPVWSPRGDLIAFTKQGGGQFSIG 361 (435)
T ss_pred ccCC-CCccCceeEcC-CCCEEEEEECCCCCCeEEEEECCCCCeEEeecCC-CcccCeEECCCCCEEEEEEcCCCceEEE
Confidence 2221 11223477887 89999987743 35777898888887765432 12234568898877655443 2 688
Q ss_pred EEecccc
Q 016020 338 VWNFRGE 344 (396)
Q Consensus 338 iWd~~ge 344 (396)
+||..|.
T Consensus 362 ~~d~~~~ 368 (435)
T PRK05137 362 VMKPDGS 368 (435)
T ss_pred EEECCCC
Confidence 8998773
No 128
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.15 E-value=0.025 Score=64.58 Aligned_cols=248 Identities=16% Similarity=0.188 Sum_probs=152.1
Q ss_pred cchhhhhhccccceeeeccccceEEEecCCCC-------------ceEEEEeeecCCCeEEEEEeEecCCCceeeeEeee
Q 016020 98 RDIVFALAHSGVCAAFSRETNRRICFLNVSPD-------------EVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTK 164 (396)
Q Consensus 98 ~dii~~L~~sG~c~af~~~t~~~ic~lN~s~~-------------evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~ 164 (396)
..+.++-+.++.-..||.. |+.+-++-.+.. .--+.|.++..++.|.++-.+ . + ..+.++
T Consensus 580 g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~-n----~-~Ir~id 652 (1057)
T PLN02919 580 NRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTE-N----H-ALREID 652 (1057)
T ss_pred CeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCC-C----c-eEEEEe
Confidence 4577777788888889864 666666644211 123667777655554442211 1 1 123222
Q ss_pred hh--hh--hhCCCCCCCcc--ee------ecccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc------
Q 016020 165 IE--YI--RRGKPDSGFAL--FE------SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD------ 226 (396)
Q Consensus 165 ~~--~i--~~gk~~~~~~L--F~------~~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~------ 226 (396)
.. .+ ..|. |..- ++ ...+.+|--|-||+.+|.+...++.++.+++||..+.... .+.+
T Consensus 653 ~~~~~V~tlag~---G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~ 728 (1057)
T PLN02919 653 FVNETVRTLAGN---GTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERN 728 (1057)
T ss_pred cCCCEEEEEecc---CcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCcccc
Confidence 11 01 0110 1100 11 1247899999999999999999999999999999876532 1111
Q ss_pred -----------CceEEEEEcCC-eEEEEEecCCCeeeeEEEEeecCcEEEEEE---------------------eecccC
Q 016020 227 -----------KHVQEIKISPG-IMLLIFNRSSSHVPLKILSIEDGTVLKVFY---------------------HLLHRN 273 (396)
Q Consensus 227 -----------~~VqEIkiSpg-~~Ll~~q~~~~~iplkIl~IetG~~l~s~~---------------------~~L~~s 273 (396)
.....|.++|+ -+|.+..... --+.+||+.+|+.....- -.+.+-
T Consensus 729 ~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n--~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P 806 (1057)
T PLN02919 729 LNGSSGTSTSFAQPSGISLSPDLKELYIADSES--SSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHP 806 (1057)
T ss_pred CCCCccccccccCccEEEEeCCCCEEEEEECCC--CeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCC
Confidence 23456888864 4455555543 358889998876431110 001111
Q ss_pred CccchhhhhcceeeEeecCCeeeEEEcccceEEEec-------------ccccCCCceEEEeecCeEEEEEEc-CeEEEE
Q 016020 274 KKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVS-------------RTEFMTPSAFIFLYENQLFLTFRN-RTVAVW 339 (396)
Q Consensus 274 k~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~-------------~t~~~~PsAFiFly~~qLFLTfs~-gti~iW 339 (396)
..+.|-+ .|.-.+.-..++.|++||..++++..+. .+.++.|....+.+++++|++=++ +.|.+|
T Consensus 807 ~Gvavd~-dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvi 885 (1057)
T PLN02919 807 LGVLCAK-DGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYL 885 (1057)
T ss_pred ceeeEeC-CCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEE
Confidence 2345444 4554444558899999999998887643 335678999999999999998766 899999
Q ss_pred eccc-ce---ee-eeccccccCCCC
Q 016020 340 NFRG-EL---VT-SFEDHLLWHPDC 359 (396)
Q Consensus 340 d~~g-eL---~t-~fedh~l~~~~c 359 (396)
|.+. ++ .+ .+.+..+..+..
T Consensus 886 d~~~~~~~~~~~l~~~~~~~~~~~~ 910 (1057)
T PLN02919 886 DLNKGEAAEILTLELKGVQPPRPKS 910 (1057)
T ss_pred ECCCCccceeEeeccccccCCCCcc
Confidence 9987 33 12 444666665443
No 129
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=97.13 E-value=0.012 Score=60.18 Aligned_cols=186 Identities=13% Similarity=0.155 Sum_probs=137.8
Q ss_pred CeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEE
Q 016020 189 GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVF 266 (396)
Q Consensus 189 gfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~ 266 (396)
.-..|.. +|-.||..-.+|.+-+|||-+..---.+++ .-|+.+-||++=.+|+..++ +-.+++||+-+|.+++.+
T Consensus 27 ~~~~Fs~-~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~--D~si~lwDl~~gs~l~ri 103 (405)
T KOG1273|consen 27 ECCQFSR-WGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSR--DWSIKLWDLLKGSPLKRI 103 (405)
T ss_pred ceEEecc-CcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecC--CceeEEEeccCCCceeEE
Confidence 3456777 999999999999999999999997777777 88999999976666666666 567899999999999998
Q ss_pred EeecccCCccchhhhhcceeeEeecCCeeeEEEcccceEEEecc----cccCCCceEEEeecCeEEEEEEc-CeEEEEec
Q 016020 267 YHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSR----TEFMTPSAFIFLYENQLFLTFRN-RTVAVWNF 341 (396)
Q Consensus 267 ~~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~----t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~ 341 (396)
.+. .+--..+|.+.-..+-+.-+-++.=.+.++..++-...+. ...-.++.-.|-.-++..+|=-. |.+.|+|+
T Consensus 104 rf~-spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a 182 (405)
T KOG1273|consen 104 RFD-SPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDA 182 (405)
T ss_pred Ecc-CccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEec
Confidence 854 2223478888888888999988888888888744333221 12234555567777787777655 99999999
Q ss_pred cc-ceeeeeccccccCCC------CCCCcEEEccCCcEEEEeccCC
Q 016020 342 RG-ELVTSFEDHLLWHPD------CNTNNIYITSDQDLIISYCKAE 380 (396)
Q Consensus 342 ~g-eL~t~fedh~l~~~~------c~~n~~~it~~qd~ii~~~~~~ 380 (396)
+. +.+.+|---- ++. .-.+..+|..++|=+|--+...
T Consensus 183 ~t~e~vas~rits--~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~ 226 (405)
T KOG1273|consen 183 ETLECVASFRITS--VQAIKQIIVSRKGRFLIINTSDRVIRTYEIS 226 (405)
T ss_pred chheeeeeeeech--heeeeEEEEeccCcEEEEecCCceEEEEehh
Confidence 99 6777764322 111 4456677888888777665544
No 130
>PRK02889 tolB translocation protein TolB; Provisional
Probab=97.07 E-value=0.043 Score=55.54 Aligned_cols=148 Identities=11% Similarity=0.094 Sum_probs=87.9
Q ss_pred EEeeCCCCcEEEeecC---CCeEEEEeccCceEEEEecc--CceEEEEEcCC-eEEEEEecCCCeeeeEEEEeecCcEEE
Q 016020 191 VEFDDVNGKVLTYSAQ---DSIYKVFDLKNYTMLYSISD--KHVQEIKISPG-IMLLIFNRSSSHVPLKILSIEDGTVLK 264 (396)
Q Consensus 191 VEFDd~NgkIlt~~a~---d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg-~~Ll~~q~~~~~iplkIl~IetG~~l~ 264 (396)
..|.+ +|+.|+|.+. ...+.+||+.+.+.. .+.+ ..+....|||+ -.|++........-+-++++.+|+ +.
T Consensus 201 p~wSP-DG~~la~~s~~~~~~~I~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~ 277 (427)
T PRK02889 201 PAWSP-DGTKLAYVSFESKKPVVYVHDLATGRRR-VVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LR 277 (427)
T ss_pred ceEcC-CCCEEEEEEccCCCcEEEEEECCCCCEE-EeecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cE
Confidence 35666 6888887654 346899999988643 3432 34567899975 455554444343344445555554 33
Q ss_pred EEEeecccCCccchhhhhcceeeEeec-CCeeeEEEc--ccceEEEecccccCCCceEEEeecCeEEEEEEc-C---eEE
Q 016020 265 VFYHLLHRNKKVDFIEQFNEKLLVKQE-NENLQILDV--RNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN-R---TVA 337 (396)
Q Consensus 265 s~~~~L~~sk~i~FiE~~~ekLLIKQe-d~~L~I~Dv--~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-g---ti~ 337 (396)
.+...-.....+.|.+ .|++|++-++ ++..+||.+ .+++...+.... ......-|+++++..+..+. + .|.
T Consensus 278 ~lt~~~~~~~~~~wSp-DG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g-~~~~~~~~SpDG~~Ia~~s~~~g~~~I~ 355 (427)
T PRK02889 278 RLTQSSGIDTEPFFSP-DGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTG-SYNTSPRISPDGKLLAYISRVGGAFKLY 355 (427)
T ss_pred ECCCCCCCCcCeEEcC-CCCEEEEEecCCCCcEEEEEECCCCceEEEecCC-CCcCceEECCCCCEEEEEEccCCcEEEE
Confidence 3221011223477888 8999987664 456788865 456555443111 11123458898887655444 2 699
Q ss_pred EEeccc
Q 016020 338 VWNFRG 343 (396)
Q Consensus 338 iWd~~g 343 (396)
+||+.+
T Consensus 356 v~d~~~ 361 (427)
T PRK02889 356 VQDLAT 361 (427)
T ss_pred EEECCC
Confidence 999987
No 131
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=97.04 E-value=0.0032 Score=64.93 Aligned_cols=110 Identities=22% Similarity=0.236 Sum_probs=88.2
Q ss_pred eEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc-CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEe
Q 016020 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYH 268 (396)
Q Consensus 190 fVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~-~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~ 268 (396)
-|+|+| ++. +-+.++|.++|+|||.+....=+|.. +-+-+|..+|...|++...+ .-=+.+||=-+|..-+.-..
T Consensus 265 ~V~w~d-~~v-~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gss--dr~irl~DPR~~~gs~v~~s 340 (423)
T KOG0313|consen 265 SVVWSD-ATV-IYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSS--DRHIRLWDPRTGDGSVVSQS 340 (423)
T ss_pred eEEEcC-CCc-eEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCC--CCceeecCCCCCCCceeEEe
Confidence 578888 554 44578899999999999999988887 88999999999999999888 55578899988766655444
Q ss_pred ecccCCc---cchhhhhcce-eeEeecCCeeeEEEcccce
Q 016020 269 LLHRNKK---VDFIEQFNEK-LLVKQENENLQILDVRNAE 304 (396)
Q Consensus 269 ~L~~sk~---i~FiE~~~ek-LLIKQed~~L~I~Dv~~~k 304 (396)
++.|++- +...+ .+++ ++...-|+..+.||+|+.+
T Consensus 341 ~~gH~nwVssvkwsp-~~~~~~~S~S~D~t~klWDvRS~k 379 (423)
T KOG0313|consen 341 LIGHKNWVSSVKWSP-TNEFQLVSGSYDNTVKLWDVRSTK 379 (423)
T ss_pred eecchhhhhheecCC-CCceEEEEEecCCeEEEEEeccCC
Confidence 6688775 45556 4454 5567899999999999977
No 132
>PRK04922 tolB translocation protein TolB; Provisional
Probab=97.04 E-value=0.041 Score=55.62 Aligned_cols=147 Identities=10% Similarity=0.095 Sum_probs=91.4
Q ss_pred EeeCCCCcEEEeecC---CCeEEEEeccCceEEEEecc--CceEEEEEcCC-eEEEEEecCCCeeeeEEEEeecCcEEEE
Q 016020 192 EFDDVNGKVLTYSAQ---DSIYKVFDLKNYTMLYSISD--KHVQEIKISPG-IMLLIFNRSSSHVPLKILSIEDGTVLKV 265 (396)
Q Consensus 192 EFDd~NgkIlt~~a~---d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg-~~Ll~~q~~~~~iplkIl~IetG~~l~s 265 (396)
.|.+ +|+-++|.+. +..+.+||+.+.+.. .|.+ ......+|||+ -.|++....++.--|.++++.+|+...-
T Consensus 210 ~wSp-Dg~~la~~s~~~~~~~l~~~dl~~g~~~-~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~l 287 (433)
T PRK04922 210 AWSP-DGKKLAYVSFERGRSAIYVQDLATGQRE-LVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRL 287 (433)
T ss_pred cCCC-CCCEEEEEecCCCCcEEEEEECCCCCEE-EeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEEC
Confidence 4455 6777777653 346889999887742 2332 23457899964 4455544444445688899999875432
Q ss_pred EEeecccCCccchhhhhcceeeEeec-CCe--eeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc--C--eEEE
Q 016020 266 FYHLLHRNKKVDFIEQFNEKLLVKQE-NEN--LQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN--R--TVAV 338 (396)
Q Consensus 266 ~~~~L~~sk~i~FiE~~~ekLLIKQe-d~~--L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~--g--ti~i 338 (396)
..+ -.....+.|.+ .+.+|+...+ ++. |-++|+.+++...+.... ......-|+++++.++..+. + .|.+
T Consensus 288 t~~-~~~~~~~~~sp-DG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g-~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v 364 (433)
T PRK04922 288 TNH-FGIDTEPTWAP-DGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQG-NYNARASVSPDGKKIAMVHGSGGQYRIAV 364 (433)
T ss_pred ccC-CCCccceEECC-CCCEEEEEECCCCCceEEEEECCCCCeEEeecCC-CCccCEEECCCCCEEEEEECCCCceeEEE
Confidence 221 11223478888 8999988764 333 555677788776654222 22345678888887554432 2 6999
Q ss_pred Eeccc
Q 016020 339 WNFRG 343 (396)
Q Consensus 339 Wd~~g 343 (396)
||+++
T Consensus 365 ~d~~~ 369 (433)
T PRK04922 365 MDLST 369 (433)
T ss_pred EECCC
Confidence 99977
No 133
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=97.03 E-value=0.0042 Score=64.14 Aligned_cols=134 Identities=13% Similarity=0.172 Sum_probs=98.8
Q ss_pred eCCCCcEEEeecCCCeEEEEeccCc---eEEEE-eccCceEEEEEcCCeEEEEEecCCCeeeeEEEEeec---CcEEEEE
Q 016020 194 DDVNGKVLTYSAQDSIYKVFDLKNY---TMLYS-ISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIED---GTVLKVF 266 (396)
Q Consensus 194 Dd~NgkIlt~~a~d~~YrVwdlknY---s~lys-Is~~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~Iet---G~~l~s~ 266 (396)
.++-.-++|+++.|+.+|+||.+.. .++.. -.+-+|-=|-|+...-||++... ...++|||+-. |+++..|
T Consensus 266 SptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~D--dGt~~iwDLR~~~~~~pVA~f 343 (440)
T KOG0302|consen 266 SPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGD--DGTLSIWDLRQFKSGQPVATF 343 (440)
T ss_pred CCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCC--CceEEEEEhhhccCCCcceeE
Confidence 4555678999999999999999999 44444 33367777888887778888877 78899999865 8888899
Q ss_pred EeecccCCccchhhhhcceeeEeecCCeeeEEEcccceEE-----EecccccCCCceEEEeecCeEEE
Q 016020 267 YHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELM-----EVSRTEFMTPSAFIFLYENQLFL 329 (396)
Q Consensus 267 ~~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~-----~v~~t~~~~PsAFiFly~~qLFL 329 (396)
++--++=-.|+|-++..+-|+..-+|+-+-|||+..-.=. +-..+-...|--.+|++.+|-++
T Consensus 344 k~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~ 411 (440)
T KOG0302|consen 344 KYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEV 411 (440)
T ss_pred EeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHh
Confidence 9422333338899888999999999999999999863221 11112235566788888777543
No 134
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=97.00 E-value=0.0052 Score=64.44 Aligned_cols=181 Identities=17% Similarity=0.264 Sum_probs=131.4
Q ss_pred CcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCc
Q 016020 198 GKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKK 275 (396)
Q Consensus 198 gkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~ 275 (396)
||.++...+|..+-|||-.+.+-++..++ ..|....|..|..=|....+ +-.+|+|+++.-.-+.++- .|...
T Consensus 214 gkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~--Drsvkvw~~~~~s~vetly---GHqd~ 288 (479)
T KOG0299|consen 214 GKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASA--DRSVKVWSIDQLSYVETLY---GHQDG 288 (479)
T ss_pred CcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeec--CCceEEEehhHhHHHHHHh---CCccc
Confidence 89999999999999999999999999888 89999999999988888888 7889999998865555433 33333
Q ss_pred -cchhhhhcce-eeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc-CeEEEEecccc--eee-ee
Q 016020 276 -VDFIEQFNEK-LLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNFRGE--LVT-SF 349 (396)
Q Consensus 276 -i~FiE~~~ek-LLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~~ge--L~t-~f 349 (396)
.+--.+.-|. +-++-.|.+.++|+| .-+.+.|-+++--.|.+.-|..+.. |+|=|+ |+|.+|++.-. |-| ..
T Consensus 289 v~~IdaL~reR~vtVGgrDrT~rlwKi-~eesqlifrg~~~sidcv~~In~~H-fvsGSdnG~IaLWs~~KKkplf~~~~ 366 (479)
T KOG0299|consen 289 VLGIDALSRERCVTVGGRDRTVRLWKI-PEESQLIFRGGEGSIDCVAFINDEH-FVSGSDNGSIALWSLLKKKPLFTSRL 366 (479)
T ss_pred eeeechhcccceEEeccccceeEEEec-cccceeeeeCCCCCeeeEEEecccc-eeeccCCceEEEeeecccCceeEeec
Confidence 2222223344 445669999999999 6666667777777888888887765 566555 99999999883 555 34
Q ss_pred ccccccCCCCCCCcEEEc-----cCCcEEEEeccCCCCCcc
Q 016020 350 EDHLLWHPDCNTNNIYIT-----SDQDLIISYCKAEPEDQW 385 (396)
Q Consensus 350 edh~l~~~~c~~n~~~it-----~~qd~ii~~~~~~~~~~~ 385 (396)
-.++...+...+++-+|| ...||..|.-....---|
T Consensus 367 AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW 407 (479)
T KOG0299|consen 367 AHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLW 407 (479)
T ss_pred cccccCCccccccccceeeeEecccCceEEecCCCCceEEE
Confidence 444444445666555555 577888877543333334
No 135
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.97 E-value=0.17 Score=45.15 Aligned_cols=170 Identities=14% Similarity=0.167 Sum_probs=107.3
Q ss_pred CCeEEEEeccCceEEEEecc----CceEEEEE-cCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCccchhhh
Q 016020 207 DSIYKVFDLKNYTMLYSISD----KHVQEIKI-SPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQ 281 (396)
Q Consensus 207 d~~YrVwdlknYs~lysIs~----~~VqEIki-Spg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~i~FiE~ 281 (396)
++++..||+++.+.+.+..- .......+ .+|.++... ..--|..||+.||+.+-++.. ....... ...
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~----~~~~l~~~d~~tG~~~W~~~~--~~~~~~~-~~~ 74 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVAS----GDGNLYALDAKTGKVLWRFDL--PGPISGA-PVV 74 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEE----TTSEEEEEETTTSEEEEEEEC--SSCGGSG-EEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEc----CCCEEEEEECCCCCEEEEeec--cccccce-eee
Confidence 57788899999999988853 22221133 566655442 345678899999999998883 2211122 145
Q ss_pred hcceeeEeecCCeeeEEEcccceEEEe-cccc-----cCCCceEEEeecCeEEEEEEcCeEEEEecc-cceeeeeccccc
Q 016020 282 FNEKLLVKQENENLQILDVRNAELMEV-SRTE-----FMTPSAFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFEDHLL 354 (396)
Q Consensus 282 ~~ekLLIKQed~~L~I~Dv~~~ki~~v-~~t~-----~~~PsAFiFly~~qLFLTfs~gti~iWd~~-geL~t~fedh~l 354 (396)
.++.+++-..++.|..+|..+++++-. ..+. ...+.+.. ++++.+++...++.+-.+|.. |+++-...-+.+
T Consensus 75 ~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~ 153 (238)
T PF13360_consen 75 DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPA-VDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEP 153 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEE-EETTEEEEEETCSEEEEEETTTTEEEEEEESSTT
T ss_pred cccccccccceeeeEecccCCcceeeeeccccccccccccccCce-EecCEEEEEeccCcEEEEecCCCcEEEEeecCCC
Confidence 778888888888999999999999886 3332 22233333 337777777778999999955 776554433321
Q ss_pred c-------------CCCCCCCcEEEccCCcEEEEeccCCCCC-cc
Q 016020 355 W-------------HPDCNTNNIYITSDQDLIISYCKAEPED-QW 385 (396)
Q Consensus 355 ~-------------~~~c~~n~~~it~~qd~ii~~~~~~~~~-~~ 385 (396)
- .+-=.++.+|++..+-.+++. ...... .|
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~-d~~tg~~~w 197 (238)
T PF13360_consen 154 RGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAV-DLATGEKLW 197 (238)
T ss_dssp -SS--EEEETTEEEEEECCTTEEEEECCTSSEEEE-ETTTTEEEE
T ss_pred CCCcceeeecccccceEEECCEEEEEcCCCeEEEE-ECCCCCEEE
Confidence 1 111235689998877766666 544443 35
No 136
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=96.87 E-value=0.016 Score=60.63 Aligned_cols=153 Identities=18% Similarity=0.153 Sum_probs=96.6
Q ss_pred CCCeEEEEEeEecCCCceeeeEeeehhh----hhhCCCCCCCcceeecccCCCCeEEeeCCCCcEEEeecCCCeEEEEec
Q 016020 140 NNDSLITVSVYASDNFSSLKCRSTKIEY----IRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDL 215 (396)
Q Consensus 140 ~n~slI~vSv~~sd~~s~L~cr~~~~~~----i~~gk~~~~~~LF~~~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdl 215 (396)
..|+||++--..+|. |+|.|+.-..++ +..--+-..+|| +.+-|.||- =++.-|--+|-.-=|..+.||||
T Consensus 135 psDnlIl~ar~eddv-s~LEvYVyn~~e~nlYvHHD~ilpafPL-C~ewld~~~---~~~~~gNyvAiGtmdp~IeIWDL 209 (463)
T KOG0270|consen 135 PSDNLILCARNEDDV-SYLEVYVYNEEEENLYVHHDFILPAFPL-CIEWLDHGS---KSGGAGNYVAIGTMDPEIEIWDL 209 (463)
T ss_pred cCCcEEEEeeccCCc-eEEEEEEEcCCCcceeEecceeccCcch-hhhhhhcCC---CCCCCcceEEEeccCceeEEecc
Confidence 679999976555555 999999986543 222222233333 223333311 02333333444445779999998
Q ss_pred cCce------EEEE-------------eccCceE----EEEEc-CCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecc
Q 016020 216 KNYT------MLYS-------------ISDKHVQ----EIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLH 271 (396)
Q Consensus 216 knYs------~lys-------------Is~~~Vq----EIkiS-pg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~ 271 (396)
-=.- .|-+ +++..-. .+.+. .-..+|++.++ +-.+++||+.+|++-.++. |
T Consensus 210 DI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsa--D~TV~lWD~~~g~p~~s~~---~ 284 (463)
T KOG0270|consen 210 DIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSA--DKTVKLWDVDTGKPKSSIT---H 284 (463)
T ss_pred ccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCC--CceEEEEEcCCCCcceehh---h
Confidence 5332 1211 1111111 11111 22356677777 7889999999999999999 8
Q ss_pred cCCc---cchhhhhcceeeEeecCCeeeEEEccc
Q 016020 272 RNKK---VDFIEQFNEKLLVKQENENLQILDVRN 302 (396)
Q Consensus 272 ~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~ 302 (396)
|+++ ++|-..-.+.||.+.-|+.+.+.|+|.
T Consensus 285 ~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~ 318 (463)
T KOG0270|consen 285 HGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRD 318 (463)
T ss_pred cCCceeEEEecCCCceEEEeccccceEEeeeccC
Confidence 9999 567777789999999999999999993
No 137
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=96.86 E-value=0.024 Score=59.68 Aligned_cols=156 Identities=15% Similarity=0.204 Sum_probs=116.2
Q ss_pred EEeeCCCCcEEEeecCCCeEEEEeccC---------ceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeec
Q 016020 191 VEFDDVNGKVLTYSAQDSIYKVFDLKN---------YTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIED 259 (396)
Q Consensus 191 VEFDd~NgkIlt~~a~d~~YrVwdlkn---------Ys~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~Iet 259 (396)
+.|.+ ||..+...+.|+.+.||++.+ -+.++..++ --|.|+++++|=...-.-.+..+=.+|+||+..
T Consensus 129 L~fs~-dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~ 207 (476)
T KOG0646|consen 129 LKFSD-DGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSL 207 (476)
T ss_pred EEEeC-CCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEecc
Confidence 45777 899999999999999999863 347788887 789999999882221222233467899999999
Q ss_pred CcEEEEEEeecccCCccchhhhhcceeeEeecCCeeeEEEcccc----------------eEEEecccccC--CCceEEE
Q 016020 260 GTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNA----------------ELMEVSRTEFM--TPSAFIF 321 (396)
Q Consensus 260 G~~l~s~~~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~----------------ki~~v~~t~~~--~PsAFiF 321 (396)
|..|.++.+ +++-.--=+...+--++|+-+++.+-+.++-+- .-+.+..+|.. ..++.--
T Consensus 208 g~LLlti~f--p~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLai 285 (476)
T KOG0646|consen 208 GVLLLTITF--PSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAI 285 (476)
T ss_pred ceeeEEEec--CCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEE
Confidence 999998875 333332223345567889999999888887542 24456777777 7788888
Q ss_pred eecCeEEEEEEc-CeEEEEeccc-ceeeee
Q 016020 322 LYENQLFLTFRN-RTVAVWNFRG-ELVTSF 349 (396)
Q Consensus 322 ly~~qLFLTfs~-gti~iWd~~g-eL~t~f 349 (396)
.-|+.|.++=+. |+|-|||..+ +.+.++
T Consensus 286 s~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl 315 (476)
T KOG0646|consen 286 STDGTLLLSGDEDGKVCVWDIYSKQCIRTL 315 (476)
T ss_pred ecCccEEEeeCCCCCEEEEecchHHHHHHH
Confidence 889999999887 9999999998 644443
No 138
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=96.85 E-value=0.0066 Score=63.12 Aligned_cols=154 Identities=18% Similarity=0.164 Sum_probs=108.4
Q ss_pred EeeCCCCcEEEee---cCCCeEEEEecc-Cce-----EEEEeccCceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcE
Q 016020 192 EFDDVNGKVLTYS---AQDSIYKVFDLK-NYT-----MLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTV 262 (396)
Q Consensus 192 EFDd~NgkIlt~~---a~d~~YrVwdlk-nYs-----~lysIs~~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~ 262 (396)
-||.||.|-+|-. +..+.+-|-=+. .+. .++-=.-..|.||.|+|.-=-.+.. -+.+-.++||.|-++..
T Consensus 38 ~fcavNPkfiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIAS-gSeD~~v~vW~IPe~~l 116 (472)
T KOG0303|consen 38 SFCAVNPKFVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDCVIAS-GSEDTKVMVWQIPENGL 116 (472)
T ss_pred cccccCCceEEEEEecCCCcceeecccccccccCCCCCCccCccccccccccCccCCceeec-CCCCceEEEEECCCccc
Confidence 3788888877632 223444444331 111 1111111678999999754332222 22467899999988655
Q ss_pred EEE----EEeecccCCc---cchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc-C
Q 016020 263 LKV----FYHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN-R 334 (396)
Q Consensus 263 l~s----~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-g 334 (396)
... ...|-.|+++ |+.-+.-.+-||...-|..+.||||.|++....+. |-+.....-|.++++++.|-+. .
T Consensus 117 ~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDK 195 (472)
T KOG0303|consen 117 TRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDK 195 (472)
T ss_pred ccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccc
Confidence 443 2345588888 67777778888999999999999999999887766 9899999999999999999887 8
Q ss_pred eEEEEeccc-ceee
Q 016020 335 TVAVWNFRG-ELVT 347 (396)
Q Consensus 335 ti~iWd~~g-eL~t 347 (396)
.|+|||-+- +++.
T Consensus 196 kvRv~dpr~~~~v~ 209 (472)
T KOG0303|consen 196 KVRVIDPRRGTVVS 209 (472)
T ss_pred eeEEEcCCCCcEee
Confidence 999999876 4443
No 139
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=96.84 E-value=0.18 Score=49.22 Aligned_cols=133 Identities=14% Similarity=0.104 Sum_probs=89.6
Q ss_pred CCcEEEeecCCCeEEEEeccCceEEEEeccCceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeeccc--CC
Q 016020 197 NGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHR--NK 274 (396)
Q Consensus 197 NgkIlt~~a~d~~YrVwdlknYs~lysIs~~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~--sk 274 (396)
++.+.+ ...++.+..||+++.+.+++.+........+.+|.+.+.. ....+..+|..+|+.+-+...+-.+ +.
T Consensus 241 ~~~vy~-~~~~g~l~a~d~~tG~~~W~~~~~~~~~p~~~~~~vyv~~----~~G~l~~~d~~tG~~~W~~~~~~~~~~ss 315 (377)
T TIGR03300 241 GGQVYA-VSYQGRVAALDLRSGRVLWKRDASSYQGPAVDDNRLYVTD----ADGVVVALDRRSGSELWKNDELKYRQLTA 315 (377)
T ss_pred CCEEEE-EEcCCEEEEEECCCCcEEEeeccCCccCceEeCCEEEEEC----CCCeEEEEECCCCcEEEccccccCCcccc
Confidence 355555 3457888899999999888776444444556666655432 3467889999999988765311111 11
Q ss_pred ccchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEcCeEEE
Q 016020 275 KVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAV 338 (396)
Q Consensus 275 ~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~gti~i 338 (396)
++ ..+++|++.-+++.|.++|..+++++-..+.+...-.+--.++++.||+.-.+|++-.
T Consensus 316 p~----i~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~~~l~v~~~dG~l~~ 375 (377)
T TIGR03300 316 PA----VVGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVVGDGLLVQTRDGDLYA 375 (377)
T ss_pred CE----EECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEECCEEEEEeCCceEEE
Confidence 11 2578999999999999999999999865443332112222467788999999987754
No 140
>PRK05137 tolB translocation protein TolB; Provisional
Probab=96.83 E-value=0.085 Score=53.31 Aligned_cols=133 Identities=12% Similarity=0.136 Sum_probs=85.4
Q ss_pred CeEEEEeccCceEEEEec--cCceEEEEEcCCeE-EEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCccchhhhhcc
Q 016020 208 SIYKVFDLKNYTMLYSIS--DKHVQEIKISPGIM-LLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNE 284 (396)
Q Consensus 208 ~~YrVwdlknYs~lysIs--~~~VqEIkiSpg~~-Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~i~FiE~~~e 284 (396)
..+.+||..++. +..++ ...+...+|||+-- |+.....+..--+.+|++.+|+...-..+. .......|.+ .|+
T Consensus 182 ~~l~~~d~dg~~-~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~-g~~~~~~~SP-DG~ 258 (435)
T PRK05137 182 KRLAIMDQDGAN-VRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFP-GMTFAPRFSP-DGR 258 (435)
T ss_pred eEEEEECCCCCC-cEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCC-CcccCcEECC-CCC
Confidence 366677775554 33343 36899999997654 433333344567899999999875432211 2333467777 888
Q ss_pred eeeEe-ecCCe--eeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc--C--eEEEEecccc
Q 016020 285 KLLVK-QENEN--LQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN--R--TVAVWNFRGE 344 (396)
Q Consensus 285 kLLIK-Qed~~--L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~--g--ti~iWd~~ge 344 (396)
+|++- ..+++ |-+||+.++++..+.... ......-|.++++.++..++ | .|-+||.+|.
T Consensus 259 ~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~-~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~ 324 (435)
T PRK05137 259 KVVMSLSQGGNTDIYTMDLRSGTTTRLTDSP-AIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGS 324 (435)
T ss_pred EEEEEEecCCCceEEEEECCCCceEEccCCC-CccCceeEcCCCCEEEEEECCCCCCeEEEEECCCC
Confidence 88654 45555 555699999988764432 23456788999886655554 3 5777788884
No 141
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=96.83 E-value=0.038 Score=56.60 Aligned_cols=191 Identities=16% Similarity=0.258 Sum_probs=112.8
Q ss_pred EEeeCCCCcEEEeecCCCeEEEEeccCceE------EEEeccCceEEEEEcCCeEEEEEec-CCCeeeeEEEE-eecCcE
Q 016020 191 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTM------LYSISDKHVQEIKISPGIMLLIFNR-SSSHVPLKILS-IEDGTV 262 (396)
Q Consensus 191 VEFDd~NgkIlt~~a~d~~YrVwdlknYs~------lysIs~~~VqEIkiSpg~~Ll~~q~-~~~~iplkIl~-IetG~~ 262 (396)
+.|.- |||-+|..+.|..+||||++|+.. =-.+..++-.-|+|+|+---++..- ..+.+.+-=++ =++|..
T Consensus 92 ~~FsS-dGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~ 170 (420)
T KOG2096|consen 92 VAFSS-DGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSG 170 (420)
T ss_pred eEEcC-CCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEeeecccCCC
Confidence 57877 899999999999999999999872 2234446788888888743322221 22222221111 122333
Q ss_pred EEEEEee----cccCCccch----hhhhcceeeEeecCCeeeEEEcccceEEE-e------------cc-c-----ccCC
Q 016020 263 LKVFYHL----LHRNKKVDF----IEQFNEKLLVKQENENLQILDVRNAELME-V------------SR-T-----EFMT 315 (396)
Q Consensus 263 l~s~~~~----L~~sk~i~F----iE~~~ekLLIKQed~~L~I~Dv~~~ki~~-v------------~~-t-----~~~~ 315 (396)
...+.+. .++...++- +.--+.+|+...+|..|-+||++ |+++- + ++ + -.|+
T Consensus 171 ~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFT 249 (420)
T KOG2096|consen 171 SHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFT 249 (420)
T ss_pred CcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCC
Confidence 3322211 111111111 22346789999999999999998 54432 1 11 1 1234
Q ss_pred Cc-------------------------------eEEEeecCeEEEEEEc-CeEEEEecccc------eeeeeccccccCC
Q 016020 316 PS-------------------------------AFIFLYENQLFLTFRN-RTVAVWNFRGE------LVTSFEDHLLWHP 357 (396)
Q Consensus 316 Ps-------------------------------AFiFly~~qLFLTfs~-gti~iWd~~ge------L~t~fedh~l~~~ 357 (396)
|. +|-|+++++-.+|.|. |+++|||.+=+ .++.=+...+.+.
T Consensus 250 pDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~a 329 (420)
T KOG2096|consen 250 PDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHA 329 (420)
T ss_pred CCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhh
Confidence 43 4445788899999988 99999999752 2222222222221
Q ss_pred ---------CCCCCcEEEccCCcEEEEeccCCCCC
Q 016020 358 ---------DCNTNNIYITSDQDLIISYCKAEPED 383 (396)
Q Consensus 358 ---------~c~~n~~~it~~qd~ii~~~~~~~~~ 383 (396)
.||++.++-.+---=|=-||--++.+
T Consensus 330 ag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~ 364 (420)
T KOG2096|consen 330 AGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKD 364 (420)
T ss_pred cCCCceEEEeCCCCcEEEeecCCceEEEEcccCcc
Confidence 18888887666655566677766554
No 142
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=96.80 E-value=0.0088 Score=63.02 Aligned_cols=147 Identities=13% Similarity=0.206 Sum_probs=111.9
Q ss_pred EeeCCCCc-EEEeecCCCeEEEEeccCce-----EEEEeccCceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEE
Q 016020 192 EFDDVNGK-VLTYSAQDSIYKVFDLKNYT-----MLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKV 265 (396)
Q Consensus 192 EFDd~Ngk-Ilt~~a~d~~YrVwdlknYs-----~lysIs~~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s 265 (396)
+|-+ ||. .+..++...-+.+|||.+-+ .+|-....-+.-+++|+....++.++.. ..+.|+..-||+.+.+
T Consensus 264 ~f~p-~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~--G~I~lLhakT~eli~s 340 (514)
T KOG2055|consen 264 EFAP-NGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNN--GHIHLLHAKTKELITS 340 (514)
T ss_pred eecC-CCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccC--ceEEeehhhhhhhhhe
Confidence 4445 788 88888889999999999877 4555555678889999988888888884 5568899999999999
Q ss_pred EEeecccCCccchhhhhcceeeEeecCCeeeEEEcccceEEEec-ccccCCCceEEEeecCeEEEEEEc-CeEEEEeccc
Q 016020 266 FYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVS-RTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNFRG 343 (396)
Q Consensus 266 ~~~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~-~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~~g 343 (396)
+++- +.-+.+.|.. +++.|++--.++.+-+|||+..++++.- ....-.-..+-=+.++++|-|=|+ |-|-|||.+.
T Consensus 341 ~Kie-G~v~~~~fsS-dsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s 418 (514)
T KOG2055|consen 341 FKIE-GVVSDFTFSS-DSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNS 418 (514)
T ss_pred eeec-cEEeeEEEec-CCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccch
Confidence 9854 6667788997 8888888888999999999999888721 111112222223456777777787 9999999665
No 143
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=96.72 E-value=0.018 Score=60.41 Aligned_cols=150 Identities=14% Similarity=0.199 Sum_probs=108.1
Q ss_pred eEEeeCCCCcEEEeecCCCeEEEEeccCce---EEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEE
Q 016020 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYT---MLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLK 264 (396)
Q Consensus 190 fVEFDd~NgkIlt~~a~d~~YrVwdlknYs---~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~ 264 (396)
|+.|.+ |||-||..+.|.+-.+|..-+=. ..+.+-+ ..|.=|.|||+---|+.=+...+ +++||+.||....
T Consensus 229 fl~FS~-nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~--~~lwDv~tgd~~~ 305 (519)
T KOG0293|consen 229 FLQFSH-NGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEV--LSLWDVDTGDLRH 305 (519)
T ss_pred EEEEcC-CCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHh--eeeccCCcchhhh
Confidence 899999 99999999999999999865543 4555554 88999999999988888888665 9999999999887
Q ss_pred EEEeecccCC-ccchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeE-EEEEEcCeEEEEecc
Q 016020 265 VFYHLLHRNK-KVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQL-FLTFRNRTVAVWNFR 342 (396)
Q Consensus 265 s~~~~L~~sk-~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qL-FLTfs~gti~iWd~~ 342 (396)
...+-++-+. .+...+ ++--++.+.-|..+--||+--+++..---.........--.||+.. +++..+-.|.++++.
T Consensus 306 ~y~~~~~~S~~sc~W~p-Dg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e 384 (519)
T KOG0293|consen 306 LYPSGLGFSVSSCAWCP-DGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNRE 384 (519)
T ss_pred hcccCcCCCcceeEEcc-CCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechh
Confidence 6653322222 255566 7888999999999999998766554422222111222222345554 555666899999987
Q ss_pred c
Q 016020 343 G 343 (396)
Q Consensus 343 g 343 (396)
.
T Consensus 385 ~ 385 (519)
T KOG0293|consen 385 A 385 (519)
T ss_pred h
Confidence 6
No 144
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=96.69 E-value=0.087 Score=53.30 Aligned_cols=160 Identities=15% Similarity=0.198 Sum_probs=105.7
Q ss_pred EeecCCCeEEEEeccCceEEEEecc-CceE-EEEEcC-CeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccC-Cccc
Q 016020 202 TYSAQDSIYKVFDLKNYTMLYSISD-KHVQ-EIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRN-KKVD 277 (396)
Q Consensus 202 t~~a~d~~YrVwdlknYs~lysIs~-~~Vq-EIkiSp-g~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~s-k~i~ 277 (396)
.....++...|.|.++.+.+-+|.. .++. .+++|| |-.+.+..+. -.+.++|+.+++.++++.. ... .-+.
T Consensus 10 V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rd---g~vsviD~~~~~~v~~i~~--G~~~~~i~ 84 (369)
T PF02239_consen 10 VVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRD---GTVSVIDLATGKVVATIKV--GGNPRGIA 84 (369)
T ss_dssp EEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETT---SEEEEEETTSSSEEEEEE---SSEEEEEE
T ss_pred EEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCC---CeEEEEECCcccEEEEEec--CCCcceEE
Confidence 4567789999999999999999985 5553 467887 7777777654 4789999999999998772 222 2277
Q ss_pred hhhhhcceeeEe-ecCCeeeEEEcccceEEEecccccCCC-------ceEEEeecCeEEE-EEEc-CeEEEEeccc--ce
Q 016020 278 FIEQFNEKLLVK-QENENLQILDVRNAELMEVSRTEFMTP-------SAFIFLYENQLFL-TFRN-RTVAVWNFRG--EL 345 (396)
Q Consensus 278 FiE~~~ekLLIK-Qed~~L~I~Dv~~~ki~~v~~t~~~~P-------sAFiFly~~qLFL-Tfs~-gti~iWd~~g--eL 345 (396)
+.. .|.|+++. +..+.+.|+|..+.|.++.-++..++. +|...++.+..|+ ++.+ +.|-+-|.+. .+
T Consensus 85 ~s~-DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~ 163 (369)
T PF02239_consen 85 VSP-DGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNL 163 (369)
T ss_dssp E---TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCE
T ss_pred EcC-CCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccccc
Confidence 775 99999987 589999999999999998666655443 5788889888665 5665 6666667655 35
Q ss_pred ee-eeccccccCCC--CCCCcEEEc
Q 016020 346 VT-SFEDHLLWHPD--CNTNNIYIT 367 (396)
Q Consensus 346 ~t-~fedh~l~~~~--c~~n~~~it 367 (396)
++ .++---..|.- -+++.+|+.
T Consensus 164 ~~~~i~~g~~~~D~~~dpdgry~~v 188 (369)
T PF02239_consen 164 KVTTIKVGRFPHDGGFDPDGRYFLV 188 (369)
T ss_dssp EEEEEE--TTEEEEEE-TTSSEEEE
T ss_pred ceeeecccccccccccCcccceeee
Confidence 44 33221222222 667777766
No 145
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=96.66 E-value=0.014 Score=59.76 Aligned_cols=158 Identities=16% Similarity=0.244 Sum_probs=113.0
Q ss_pred cEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEE------e--------ecCc-
Q 016020 199 KVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILS------I--------EDGT- 261 (396)
Q Consensus 199 kIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~------I--------etG~- 261 (396)
-|+..-+.|.+-++|.++...||..-.+ --|-.|||++.-.|++..+- +-..+||- + +.|+
T Consensus 161 pi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSG--D~taHIW~~av~~~vP~~~a~~~hSsEe 238 (481)
T KOG0300|consen 161 PICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASG--DETAHIWKAAVNWEVPSNNAPSDHSSEE 238 (481)
T ss_pred cceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccC--CcchHHHHHhhcCcCCCCCCCCCCCchh
Confidence 3566667799999999999999988887 77999999988877777654 33344442 0 1111
Q ss_pred -------------------------EEEEEEeecccCCc---cchhhhhcceeeEeecCCeeeEEEcccceEEEeccccc
Q 016020 262 -------------------------VLKVFYHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEF 313 (396)
Q Consensus 262 -------------------------~l~s~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~ 313 (396)
++++|. .|... .+.+. -++.++...=|-.-++|||.+++....+-+|.
T Consensus 239 E~e~sDe~~~d~d~~~~sD~~tiRvPl~~lt---gH~~vV~a~dWL~-gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd 314 (481)
T KOG0300|consen 239 EEEHSDEHNRDTDSSEKSDGHTIRVPLMRLT---GHRAVVSACDWLA-GGQQMVTASWDRTANLWDVETGEVVNILTGHD 314 (481)
T ss_pred hhhcccccccccccccccCCceeeeeeeeee---ccccceEehhhhc-CcceeeeeeccccceeeeeccCceeccccCcc
Confidence 122232 33333 56666 78889999999999999999999999888886
Q ss_pred CCCceEEEeecCeEEEEEEc-CeEEEEeccc--ceeeeeccccccCCCCCCCcEEE
Q 016020 314 MTPSAFIFLYENQLFLTFRN-RTVAVWNFRG--ELVTSFEDHLLWHPDCNTNNIYI 366 (396)
Q Consensus 314 ~~PsAFiFly~~qLFLTfs~-gti~iWd~~g--eL~t~fedh~l~~~~c~~n~~~i 366 (396)
---.-----++..|.||.|- .|+++|||+- +-|.-|.+|- +.++--.|-
T Consensus 315 ~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHt----dtVTS~vF~ 366 (481)
T KOG0300|consen 315 SELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHT----DTVTSVVFN 366 (481)
T ss_pred hhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccc----cceeEEEEe
Confidence 44333334568888888877 7999999997 3667888874 344444443
No 146
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=96.55 E-value=0.029 Score=60.99 Aligned_cols=171 Identities=13% Similarity=0.192 Sum_probs=111.4
Q ss_pred CCcEEEeecCCCeEEEEeccCceEEEEecc-CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEE-----------
Q 016020 197 NGKVLTYSAQDSIYKVFDLKNYTMLYSISD-KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLK----------- 264 (396)
Q Consensus 197 NgkIlt~~a~d~~YrVwdlknYs~lysIs~-~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~----------- 264 (396)
.|.+|++.+.||+.|||-+.++-+++.+.= ..|++|.|+|+.-+-+..-+...- +-|++=.=|..+.
T Consensus 411 ~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~-~~ivnp~~G~~~e~~~t~ell~~~ 489 (733)
T KOG0650|consen 411 SGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGEC-VLIVNPIFGDRLEVGPTKELLASA 489 (733)
T ss_pred CcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCc-eEEeCccccchhhhcchhhhhhcC
Confidence 899999999999999999999999999875 899999999875332222111111 1122211121111
Q ss_pred -----------------------EEEeecccCCccchhh--hhcceeeEee---cCCeeeEEEcccceEEEecccccCCC
Q 016020 265 -----------------------VFYHLLHRNKKVDFIE--QFNEKLLVKQ---ENENLQILDVRNAELMEVSRTEFMTP 316 (396)
Q Consensus 265 -----------------------s~~~~L~~sk~i~FiE--~~~ekLLIKQ---ed~~L~I~Dv~~~ki~~v~~t~~~~P 316 (396)
..+..+.+-|+|.=++ .-|.||.+-+ .+.++.|++|..++.+.--+-..-+|
T Consensus 490 ~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~v 569 (733)
T KOG0650|consen 490 PNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLV 569 (733)
T ss_pred CCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCce
Confidence 1122223333332222 1466776544 67889999999988886555566678
Q ss_pred ceEEEeecCeEEEEEEcCeEEEEeccc-ceeeeeccccccCCC----CCCCcEEEcc
Q 016020 317 SAFIFLYENQLFLTFRNRTVAVWNFRG-ELVTSFEDHLLWHPD----CNTNNIYITS 368 (396)
Q Consensus 317 sAFiFly~~qLFLTfs~gti~iWd~~g-eL~t~fedh~l~~~~----c~~n~~~it~ 368 (396)
-+..|-+..-.||...-+.|.|||+.- +||-.+.--.-|.+. .+-+|+++.+
T Consensus 570 q~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs 626 (733)
T KOG0650|consen 570 QRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGS 626 (733)
T ss_pred eEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEec
Confidence 899999999999999999999999988 455544433344333 3344555444
No 147
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=96.44 E-value=0.037 Score=57.43 Aligned_cols=170 Identities=15% Similarity=0.217 Sum_probs=105.5
Q ss_pred CCcEEEeecCCCeEEEEeccCceEEEEeccCceEE------------------EEEcCCeEEEEEecCCCeeeeEEEEee
Q 016020 197 NGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQE------------------IKISPGIMLLIFNRSSSHVPLKILSIE 258 (396)
Q Consensus 197 NgkIlt~~a~d~~YrVwdlknYs~lysIs~~~VqE------------------IkiSpg~~Ll~~q~~~~~iplkIl~Ie 258 (396)
|..+.|.-+..+.+.||||.......+=+.-.++. +-|||-.-= ....-....-+.+|-..
T Consensus 164 ~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g-~LlsGDc~~~I~lw~~~ 242 (440)
T KOG0302|consen 164 NEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTG-RLLSGDCVKGIHLWEPS 242 (440)
T ss_pred CcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccc-ccccCccccceEeeeec
Confidence 67788888889999999997643222222122222 233330000 00000122445666667
Q ss_pred cCcEEEEEEeecccCCc---cchhhhhcceeeEeecCCeeeEEEcccc---eEEEecccccCCCceEEEeecCeEEEEEE
Q 016020 259 DGTVLKVFYHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNA---ELMEVSRTEFMTPSAFIFLYENQLFLTFR 332 (396)
Q Consensus 259 tG~~l~s~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~---ki~~v~~t~~~~PsAFiFly~~qLFLTfs 332 (396)
+|.=-..-.-+..|++. +|..+--..-+..-.=|++|+|||+|++ -++-+ ++|.-..-..=|...-. ||.+-
T Consensus 243 ~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sDVNVISWnr~~~-lLasG 320 (440)
T KOG0302|consen 243 TGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSDVNVISWNRREP-LLASG 320 (440)
T ss_pred cCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-eccCCceeeEEccCCcc-eeeec
Confidence 76655544444567776 6777767778888999999999999998 45555 45555666666666555 55554
Q ss_pred c--CeEEEEeccc----ceeeeeccccc------cCCCCCCCcEEEccCCc
Q 016020 333 N--RTVAVWNFRG----ELVTSFEDHLL------WHPDCNTNNIYITSDQD 371 (396)
Q Consensus 333 ~--gti~iWd~~g----eL~t~fedh~l------~~~~c~~n~~~it~~qd 371 (396)
+ |++.|||++- +.|+.|.-|-- |+|. +..++.++..|
T Consensus 321 ~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~--e~s~iaasg~D 369 (440)
T KOG0302|consen 321 GDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPH--EDSVIAASGED 369 (440)
T ss_pred CCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccc--cCceEEeccCC
Confidence 4 9999999985 58899999854 5554 44444444333
No 148
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=96.44 E-value=0.031 Score=60.93 Aligned_cols=105 Identities=13% Similarity=0.167 Sum_probs=81.3
Q ss_pred CCcEEEeecCCCeEEEEeccCceEE------EEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEe
Q 016020 197 NGKVLTYSAQDSIYKVFDLKNYTML------YSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYH 268 (396)
Q Consensus 197 NgkIlt~~a~d~~YrVwdlknYs~l------ysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~ 268 (396)
+.-||+-.-.|+.+.+||-+-.++- |.--+ ..|.|+++=||=++|+.+.- +=.++.||+.+++....= .
T Consensus 63 ~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasG--DsT~r~Wdvk~s~l~G~~-~ 139 (720)
T KOG0321|consen 63 KEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASG--DSTIRPWDVKTSRLVGGR-L 139 (720)
T ss_pred ccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccC--Cceeeeeeeccceeecce-e
Confidence 4567777777888888888776644 44333 78999999999999999887 667899999999988862 3
Q ss_pred ecccCCc---cchhhhhcceeeEeecCCeeeEEEcccce
Q 016020 269 LLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNAE 304 (396)
Q Consensus 269 ~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~k 304 (396)
.++|... ++|+...-.-...+-.|+.+.|||++-..
T Consensus 140 ~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~ 178 (720)
T KOG0321|consen 140 NLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNG 178 (720)
T ss_pred ecccccccchhhhccCCCcceeeccCCCcEEEEEEeccc
Confidence 3466544 99999555566678899999999998655
No 149
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=96.44 E-value=0.043 Score=55.06 Aligned_cols=178 Identities=16% Similarity=0.148 Sum_probs=109.5
Q ss_pred EeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc-CceEEEEEcCCeEEEEEecCC-----------------------
Q 016020 192 EFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-KHVQEIKISPGIMLLIFNRSS----------------------- 247 (396)
Q Consensus 192 EFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~-~~VqEIkiSpg~~Ll~~q~~~----------------------- 247 (396)
+-|--+.+.+ ..+.|.+.|+||.+++++++.+.- .-|+-+-+|.|=.+.+..-.+
T Consensus 59 Did~~s~~li-TGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ 137 (327)
T KOG0643|consen 59 DIDWDSKHLI-TGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSE 137 (327)
T ss_pred EecCCcceee-eccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhccc
Confidence 4444333444 466799999999999999999976 667777776443332221111
Q ss_pred -----------------------------CeeeeEEEEeecCcEEEEEEeeccc--CCccchhhhhcceeeEeecCCeee
Q 016020 248 -----------------------------SHVPLKILSIEDGTVLKVFYHLLHR--NKKVDFIEQFNEKLLVKQENENLQ 296 (396)
Q Consensus 248 -----------------------------~~iplkIl~IetG~~l~s~~~~L~~--sk~i~FiE~~~ekLLIKQed~~L~ 296 (396)
....+.+||+.+|++++.-.- +|. =+.+||.. ..-+.+....|..-+
T Consensus 138 ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~-~h~~~Ind~q~s~-d~T~FiT~s~Dttak 215 (327)
T KOG0643|consen 138 EPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDE-EHSSKINDLQFSR-DRTYFITGSKDTTAK 215 (327)
T ss_pred CceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechh-hhccccccccccC-CcceEEecccCccce
Confidence 235678888888888875331 122 23499988 999999999999999
Q ss_pred EEEcccceEEEecccccCCCceEEE-------eecCeE--EEEEEc---CeEE--EEeccc-ceeeeecccccc---CCC
Q 016020 297 ILDVRNAELMEVSRTEFMTPSAFIF-------LYENQL--FLTFRN---RTVA--VWNFRG-ELVTSFEDHLLW---HPD 358 (396)
Q Consensus 297 I~Dv~~~ki~~v~~t~~~~PsAFiF-------ly~~qL--FLTfs~---gti~--iWd~~g-eL~t~fedh~l~---~~~ 358 (396)
+||+.+=+++++-.|+-.--.|.++ +-.+|- =||--+ |..+ +|++-- |-..+..+|.=+ +..
T Consensus 216 l~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAf 295 (327)
T KOG0643|consen 216 LVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAF 295 (327)
T ss_pred eeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEE
Confidence 9999999999976666544444444 333332 111111 2222 222222 233344445332 223
Q ss_pred CCCCcEEEccCCcE
Q 016020 359 CNTNNIYITSDQDL 372 (396)
Q Consensus 359 c~~n~~~it~~qd~ 372 (396)
-|+++-|-|..+|=
T Consensus 296 hPdGksYsSGGEDG 309 (327)
T KOG0643|consen 296 HPDGKSYSSGGEDG 309 (327)
T ss_pred CCCCcccccCCCCc
Confidence 67888887777763
No 150
>KOG4328 consensus WD40 protein [Function unknown]
Probab=96.39 E-value=0.018 Score=60.62 Aligned_cols=163 Identities=15% Similarity=0.169 Sum_probs=113.9
Q ss_pred CCCCcceeecccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCce--EEEEecc--CceEEEEEcCCeEEEEEecCCCe
Q 016020 174 DSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT--MLYSISD--KHVQEIKISPGIMLLIFNRSSSH 249 (396)
Q Consensus 174 ~~~~~LF~~~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs--~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~ 249 (396)
..|..||..-+-. =+=+.|.+.|---+-+++-||++|.=|+++-. .+|+..+ .-+....++..--.+++..+ .
T Consensus 224 ~d~v~~f~~hs~~-Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~--~ 300 (498)
T KOG4328|consen 224 KDGVYLFTPHSGP-VSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDN--V 300 (498)
T ss_pred cCceEEeccCCcc-ccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeec--c
Confidence 3445566542111 23467888887777778889999999999865 7788843 44556667644333344444 4
Q ss_pred eeeEEEEeecCcEEEEEEeecccCCc---cchhhhhcceeeEeecCCeeeEEEccc--ceE---EEecccccCCCceEEE
Q 016020 250 VPLKILSIEDGTVLKVFYHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRN--AEL---MEVSRTEFMTPSAFIF 321 (396)
Q Consensus 250 iplkIl~IetG~~l~s~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~--~ki---~~v~~t~~~~PsAFiF 321 (396)
.-+.+||.-+++-.+..- .||. ++ |++.++.-++|+...-|+..+|||+++ +|- +. .-.|.-.+.|.-|
T Consensus 301 G~f~~iD~R~~~s~~~~~-~lh~-kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~ls-t~~HrrsV~sAyF 377 (498)
T KOG4328|consen 301 GNFNVIDLRTDGSEYENL-RLHK-KKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLS-TLPHRRSVNSAYF 377 (498)
T ss_pred cceEEEEeecCCccchhh-hhhh-cccceeecCCCCchheeecccCcceeeeehhhhcCCCCccee-cccccceeeeeEE
Confidence 488999999988766422 2333 45 899999999999999999999999997 221 22 1256677888889
Q ss_pred eecCeEEEEEE-cCeEEEEecc
Q 016020 322 LYENQLFLTFR-NRTVAVWNFR 342 (396)
Q Consensus 322 ly~~qLFLTfs-~gti~iWd~~ 342 (396)
+|.+.-.||=+ +.+|.|||..
T Consensus 378 SPs~gtl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 378 SPSGGTLLTTCQDNEIRVFDSS 399 (498)
T ss_pred cCCCCceEeeccCCceEEeecc
Confidence 99665555554 5999999994
No 151
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=96.36 E-value=0.39 Score=44.28 Aligned_cols=178 Identities=15% Similarity=0.188 Sum_probs=113.2
Q ss_pred CCeEEeeCCCCcEEEeecCCCeEEEEeccCce--EEEEec-----cCceEEEEEcCCeEEEEEecCCCeee----eEEEE
Q 016020 188 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT--MLYSIS-----DKHVQEIKISPGIMLLIFNRSSSHVP----LKILS 256 (396)
Q Consensus 188 PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs--~lysIs-----~~~VqEIkiSpg~~Ll~~q~~~~~ip----lkIl~ 256 (396)
|.=+-++..+|+++.... +...++|+++.+ .+.... ....-++++.|.=.|.+......... =+|+-
T Consensus 42 ~~G~~~~~~~g~l~v~~~--~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~ 119 (246)
T PF08450_consen 42 PNGMAFDRPDGRLYVADS--GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYR 119 (246)
T ss_dssp EEEEEEECTTSEEEEEET--TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEE
T ss_pred CceEEEEccCCEEEEEEc--CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEE
Confidence 555666633588877553 344555988875 566662 26677899986665666666543322 35777
Q ss_pred eecCcEEEEEEeecccCCccchhhhhcceeeE-eecCCeeeEEEccc--ceEE---Eeccccc--CCCceEEEeecCeEE
Q 016020 257 IEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLV-KQENENLQILDVRN--AELM---EVSRTEF--MTPSAFIFLYENQLF 328 (396)
Q Consensus 257 IetG~~l~s~~~~L~~sk~i~FiE~~~ekLLI-KQed~~L~I~Dv~~--~ki~---~v~~t~~--~~PsAFiFly~~qLF 328 (396)
+..+.......-.++..+-|.|.+ .++.|++ -...+.|..||+.. +++. .+..... -.|..+.+-.++.||
T Consensus 120 ~~~~~~~~~~~~~~~~pNGi~~s~-dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~ 198 (246)
T PF08450_consen 120 IDPDGKVTVVADGLGFPNGIAFSP-DGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLW 198 (246)
T ss_dssp EETTSEEEEEEEEESSEEEEEEET-TSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EE
T ss_pred ECCCCeEEEEecCcccccceEECC-cchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEE
Confidence 776644444444567778899998 7877774 56788899999963 2122 1211122 248889999999999
Q ss_pred EEEEc-CeEEEEecccceeeeeccccccCCC-----CCCCcEEEcc
Q 016020 329 LTFRN-RTVAVWNFRGELVTSFEDHLLWHPD-----CNTNNIYITS 368 (396)
Q Consensus 329 LTfs~-gti~iWd~~geL~t~fedh~l~~~~-----c~~n~~~it~ 368 (396)
++... +.|.++|-+|+++..++--....-+ ...+.+|||+
T Consensus 199 va~~~~~~I~~~~p~G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 199 VADWGGGRIVVFDPDGKLLREIELPVPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEEETTTEEEEEETTSCEEEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred EEEcCCCEEEEECCCccEEEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence 99775 9999999999988777643222222 2346677775
No 152
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=96.35 E-value=0.048 Score=54.33 Aligned_cols=99 Identities=15% Similarity=0.236 Sum_probs=76.2
Q ss_pred eeeeEEEEeecCcEEEEEEeecccCCccchhh--hhcceeeEeecCCeeeEEEcccceEEEecccccCCC-------ceE
Q 016020 249 HVPLKILSIEDGTVLKVFYHLLHRNKKVDFIE--QFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTP-------SAF 319 (396)
Q Consensus 249 ~iplkIl~IetG~~l~s~~~~L~~sk~i~FiE--~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~P-------sAF 319 (396)
+--+.-||+|||+..+.++ +|+-++-=+- --+..||.+.||+..+|||++|+|...|...+..+- +-.
T Consensus 135 D~~~y~~dlE~G~i~r~~r---GHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wi 211 (325)
T KOG0649|consen 135 DGVIYQVDLEDGRIQREYR---GHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWI 211 (325)
T ss_pred CeEEEEEEecCCEEEEEEc---CCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCcee
Confidence 4567789999999999998 7766633221 257789999999999999999999999877665432 223
Q ss_pred EEeecCeEEEEEEcC-eEEEEeccc-ceeeeec
Q 016020 320 IFLYENQLFLTFRNR-TVAVWNFRG-ELVTSFE 350 (396)
Q Consensus 320 iFly~~qLFLTfs~g-ti~iWd~~g-eL~t~fe 350 (396)
-.+..++..|.---| ...+|.+++ +-++.|-
T Consensus 212 gala~~edWlvCGgGp~lslwhLrsse~t~vfp 244 (325)
T KOG0649|consen 212 GALAVNEDWLVCGGGPKLSLWHLRSSESTCVFP 244 (325)
T ss_pred EEEeccCceEEecCCCceeEEeccCCCceEEEe
Confidence 568888888877665 789999998 6666553
No 153
>PRK02889 tolB translocation protein TolB; Provisional
Probab=96.35 E-value=0.13 Score=52.20 Aligned_cols=146 Identities=12% Similarity=0.076 Sum_probs=86.9
Q ss_pred CCeEEeeCCCCcEEEeecCCCe--EEEEeccCceEEEEe--ccCceEEEEEcCCeE-EEEEecCCCeeeeEEEEeecCcE
Q 016020 188 PGFVEFDDVNGKVLTYSAQDSI--YKVFDLKNYTMLYSI--SDKHVQEIKISPGIM-LLIFNRSSSHVPLKILSIEDGTV 262 (396)
Q Consensus 188 PgfVEFDd~NgkIlt~~a~d~~--YrVwdlknYs~lysI--s~~~VqEIkiSpg~~-Ll~~q~~~~~iplkIl~IetG~~ 262 (396)
||++. ++|+-.....+. +.+||..+.. .-.+ ..+.+...+|||+-- |+.....+..--+.++++.+|+.
T Consensus 159 ~g~f~-----~~iayv~~~~~~~~L~~~D~dG~~-~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~ 232 (427)
T PRK02889 159 RGVFS-----TRIAYVIKTGNRYQLQISDADGQN-AQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRR 232 (427)
T ss_pred Ccccc-----cEEEEEEccCCccEEEEECCCCCC-ceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCE
Confidence 66643 565444433334 4455554333 2222 347788999997654 43333333334589999999987
Q ss_pred EEEEEeecccCCccchhhhhcceeeE-eecCCeeeEEE--cccceEEEecccccCCCceEEEeecCeEEEEEEc--CeEE
Q 016020 263 LKVFYHLLHRNKKVDFIEQFNEKLLV-KQENENLQILD--VRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN--RTVA 337 (396)
Q Consensus 263 l~s~~~~L~~sk~i~FiE~~~ekLLI-KQed~~L~I~D--v~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~--gti~ 337 (396)
..-..+. .....+.|.+ ++.+|++ ...+++.+||. +.++++..+... ........|+++++.++..++ |...
T Consensus 233 ~~l~~~~-g~~~~~~~SP-DG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~-~~~~~~~~wSpDG~~l~f~s~~~g~~~ 309 (427)
T PRK02889 233 RVVANFK-GSNSAPAWSP-DGRTLAVALSRDGNSQIYTVNADGSGLRRLTQS-SGIDTEPFFSPDGRSIYFTSDRGGAPQ 309 (427)
T ss_pred EEeecCC-CCccceEECC-CCCEEEEEEccCCCceEEEEECCCCCcEECCCC-CCCCcCeEEcCCCCEEEEEecCCCCcE
Confidence 5433221 3334578888 8888875 45666766665 556676665332 223345679999986655565 6788
Q ss_pred EEecc
Q 016020 338 VWNFR 342 (396)
Q Consensus 338 iWd~~ 342 (396)
||..+
T Consensus 310 Iy~~~ 314 (427)
T PRK02889 310 IYRMP 314 (427)
T ss_pred EEEEE
Confidence 88664
No 154
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=96.34 E-value=0.4 Score=47.20 Aligned_cols=173 Identities=17% Similarity=0.226 Sum_probs=106.6
Q ss_pred ccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCce--E--EE--Eecc-CceEEEEEcCC-eEEEEEecCCCeeeeEEE
Q 016020 184 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT--M--LY--SISD-KHVQEIKISPG-IMLLIFNRSSSHVPLKIL 255 (396)
Q Consensus 184 ~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs--~--ly--sIs~-~~VqEIkiSpg-~~Ll~~q~~~~~iplkIl 255 (396)
.-.||-.+-|++-...+.+.+.-...+.+|++.+.. + .- .+.. ..=.-+.|+|+ -.+.+...-.+.+ .++
T Consensus 142 ~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v--~v~ 219 (345)
T PF10282_consen 142 EGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTV--SVF 219 (345)
T ss_dssp SSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEE--EEE
T ss_pred ccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcE--EEE
Confidence 457888999999666688888888899999997765 2 12 2222 55567888865 3444555554444 445
Q ss_pred Eee--cCcEEEEEE-eeccc-------CCccchhhhhcceeeEeecC-CeeeEEEc--ccceEEE--ecccccCCCceEE
Q 016020 256 SIE--DGTVLKVFY-HLLHR-------NKKVDFIEQFNEKLLVKQEN-ENLQILDV--RNAELME--VSRTEFMTPSAFI 320 (396)
Q Consensus 256 ~Ie--tG~~l~s~~-~~L~~-------sk~i~FiE~~~ekLLIKQed-~~L~I~Dv--~~~ki~~--v~~t~~~~PsAFi 320 (396)
++. +|+....-. -.++. ...|.+.+ .+.+|++-..+ .+|-+|++ .++++.. .-.+....|+.|.
T Consensus 220 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~isp-dg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~ 298 (345)
T PF10282_consen 220 DYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISP-DGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFA 298 (345)
T ss_dssp EEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-T-TSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEE
T ss_pred eecccCCceeEEEEeeeccccccccCCceeEEEec-CCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEE
Confidence 666 664332211 12221 22377776 89999997755 56999999 3455554 3445677899999
Q ss_pred EeecCeEEEEEE-c-CeEEEEeccc---ceeeeeccccccCCCC
Q 016020 321 FLYENQLFLTFR-N-RTVAVWNFRG---ELVTSFEDHLLWHPDC 359 (396)
Q Consensus 321 Fly~~qLFLTfs-~-gti~iWd~~g---eL~t~fedh~l~~~~c 359 (396)
|.++++..++.. + ++|.+|+.+. .|...-.......|.|
T Consensus 299 ~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~c 342 (345)
T PF10282_consen 299 FSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVC 342 (345)
T ss_dssp E-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEE
T ss_pred EeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEE
Confidence 999888655443 4 8999998864 3544333344444444
No 155
>PRK00178 tolB translocation protein TolB; Provisional
Probab=96.34 E-value=0.31 Score=48.72 Aligned_cols=149 Identities=11% Similarity=0.089 Sum_probs=89.9
Q ss_pred eEEeeCCCCcEEEeecCC---CeEEEEeccCceEEEEecc--CceEEEEEcCC-eEEEEEecCCCeeeeEEEEeecCcEE
Q 016020 190 FVEFDDVNGKVLTYSAQD---SIYKVFDLKNYTMLYSISD--KHVQEIKISPG-IMLLIFNRSSSHVPLKILSIEDGTVL 263 (396)
Q Consensus 190 fVEFDd~NgkIlt~~a~d---~~YrVwdlknYs~lysIs~--~~VqEIkiSpg-~~Ll~~q~~~~~iplkIl~IetG~~l 263 (396)
...|.+ +|+-|+|.+.+ ..+.+||+.+.+. ..+.. ..+...+|||+ -.|++.....+..-+.++++.+|+..
T Consensus 203 ~p~wSp-DG~~la~~s~~~~~~~l~~~~l~~g~~-~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~ 280 (430)
T PRK00178 203 SPRWSP-DGKRIAYVSFEQKRPRIFVQNLDTGRR-EQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS 280 (430)
T ss_pred eeeECC-CCCEEEEEEcCCCCCEEEEEECCCCCE-EEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE
Confidence 345676 68888776543 4678889988753 23332 33457899964 55555554444556778899998754
Q ss_pred EEEEeecccCCccchhhhhcceeeEeec-CC--eeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc--C--eE
Q 016020 264 KVFYHLLHRNKKVDFIEQFNEKLLVKQE-NE--NLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN--R--TV 336 (396)
Q Consensus 264 ~s~~~~L~~sk~i~FiE~~~ekLLIKQe-d~--~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~--g--ti 336 (396)
.-+... .....+.|.+ .+++|++..+ ++ .|-++|+.+++...+.... .....-.|+++++..+..+. + .|
T Consensus 281 ~lt~~~-~~~~~~~~sp-Dg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~-~~~~~~~~Spdg~~i~~~~~~~~~~~l 357 (430)
T PRK00178 281 RVTNHP-AIDTEPFWGK-DGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVG-NYNARPRLSADGKTLVMVHRQDGNFHV 357 (430)
T ss_pred EcccCC-CCcCCeEECC-CCCEEEEEECCCCCceEEEEECCCCCEEEeecCC-CCccceEECCCCCEEEEEEccCCceEE
Confidence 322211 1122367777 7888888764 22 4666688888876653211 11122357787776444432 3 47
Q ss_pred EEEeccc
Q 016020 337 AVWNFRG 343 (396)
Q Consensus 337 ~iWd~~g 343 (396)
.+||+.+
T Consensus 358 ~~~dl~t 364 (430)
T PRK00178 358 AAQDLQR 364 (430)
T ss_pred EEEECCC
Confidence 7889887
No 156
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=96.30 E-value=0.064 Score=55.06 Aligned_cols=184 Identities=13% Similarity=0.199 Sum_probs=125.8
Q ss_pred cEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcC--CeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCC
Q 016020 199 KVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISP--GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNK 274 (396)
Q Consensus 199 kIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSp--g~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk 274 (396)
-.+|.+...+.+|++|.-+...+=.+++ ..+-.|||.+ +-..+..... +..+++|||-+-.+...+..-.++++
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ss--DG~Vr~wD~Rs~~e~a~~~~~~~~~~ 118 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSS--DGTVRLWDIRSQAESARISWTQQSGT 118 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEecc--CCeEEEEEeecchhhhheeccCCCCC
Confidence 4567778899999999999665544444 7777888876 5555555555 78999999998777765553333322
Q ss_pred c-cchhhhhcceee-----EeecCCeeeEEEcccceE--EEecccccCCCceEEEee-cCeEEEEEEc-CeEEEEecccc
Q 016020 275 K-VDFIEQFNEKLL-----VKQENENLQILDVRNAEL--MEVSRTEFMTPSAFIFLY-ENQLFLTFRN-RTVAVWNFRGE 344 (396)
Q Consensus 275 ~-i~FiE~~~ekLL-----IKQed~~L~I~Dv~~~ki--~~v~~t~~~~PsAFiFly-~~qLFLTfs~-gti~iWd~~ge 344 (396)
+ +.|=---++.|+ -.-.+..+++||+|+.+- .....+|.+.....-|.| +.+|.||-|- |.|-++|+.++
T Consensus 119 ~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d 198 (376)
T KOG1188|consen 119 PFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD 198 (376)
T ss_pred cceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCC
Confidence 2 221110011111 112578899999999654 457889999999999998 5677888776 99999999995
Q ss_pred eeeeeccccc-------------cCCCCCCCcEEEccCCcEEEEeccCCCCCcccc
Q 016020 345 LVTSFEDHLL-------------WHPDCNTNNIYITSDQDLIISYCKAEPEDQWME 387 (396)
Q Consensus 345 L~t~fedh~l-------------~~~~c~~n~~~it~~qd~ii~~~~~~~~~~~~~ 387 (396)
.=|||++ |+.+=+.-..-+|-++++-|==|+..++.-|.|
T Consensus 199 ---~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~ 251 (376)
T KOG1188|consen 199 ---NEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLE 251 (376)
T ss_pred ---cchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhccc
Confidence 3344443 555455555667888888888888777655544
No 157
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=96.28 E-value=0.033 Score=56.99 Aligned_cols=119 Identities=11% Similarity=0.204 Sum_probs=94.4
Q ss_pred CeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCc---cchhhhhcceeeEeecCCeeeEEEcccceEEEec---c
Q 016020 237 GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNAELMEVS---R 310 (396)
Q Consensus 237 g~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~---~ 310 (396)
|.-+|+..+. -.=++|+|+.+|+..+.+. +|+.. |.|-+.--++||..++|++|++|||.+..|+.|- .
T Consensus 104 ~~p~la~~G~--~GvIrVid~~~~~~~~~~~---ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~e 178 (385)
T KOG1034|consen 104 GNPFLAAGGY--LGVIRVIDVVSGQCSKNYR---GHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVE 178 (385)
T ss_pred CCeeEEeecc--eeEEEEEecchhhhcccee---ccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccc
Confidence 4455555555 4567899999999999887 55544 7888877889999999999999999999999964 5
Q ss_pred cccCCCceEEEeecCeEEEEEEc--CeEEEEeccc-ceeeeeccccccCCCCCC
Q 016020 311 TEFMTPSAFIFLYENQLFLTFRN--RTVAVWNFRG-ELVTSFEDHLLWHPDCNT 361 (396)
Q Consensus 311 t~~~~PsAFiFly~~qLFLTfs~--gti~iWd~~g-eL~t~fedh~l~~~~c~~ 361 (396)
+|-+..-+.=|..++. ++..+- -++++|++.- +...-+|....|.|+-.+
T Consensus 179 gHrdeVLSvD~~~~gd-~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~ 231 (385)
T KOG1034|consen 179 GHRDEVLSVDFSLDGD-RIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTT 231 (385)
T ss_pred cccCcEEEEEEcCCCC-eeeccCCcceEEEEecChhHHhhhhhhhcccCCCCcc
Confidence 6777777777888888 433333 5999999997 788889999999888444
No 158
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=96.26 E-value=0.061 Score=53.86 Aligned_cols=215 Identities=14% Similarity=0.119 Sum_probs=145.1
Q ss_pred hccccceeeeccccceEEEec-CCC-CceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcceee
Q 016020 105 AHSGVCAAFSRETNRRICFLN-VSP-DEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFES 182 (396)
Q Consensus 105 ~~sG~c~af~~~t~~~ic~lN-~s~-~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF~~ 182 (396)
+-.+...+|+.+-.++.=.+| .+. +.|..=.+.-+.++-+.++|. | +.+.+=++|.||. .=+.
T Consensus 39 s~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~---d-------k~ir~wd~r~~k~-----~~~i 103 (313)
T KOG1407|consen 39 SFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASG---D-------KTIRIWDIRSGKC-----TARI 103 (313)
T ss_pred ccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecC---C-------ceEEEEEeccCcE-----EEEe
Confidence 333444444444333333222 222 357777788888888877552 2 2444557777775 1111
Q ss_pred cccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc-CceEEEEEc-CCeEEEEEecCCCeeeeEEEEeecC
Q 016020 183 ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-KHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDG 260 (396)
Q Consensus 183 ~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~-~~VqEIkiS-pg~~Ll~~q~~~~~iplkIl~IetG 260 (396)
+.-+--=++-..+ .|.-++....|..+.+.|.++|+.+-+-.- -++.|+-+. ++-|+++..+- ..+.||+--.=
T Consensus 104 ~~~~eni~i~wsp-~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~Gl---G~v~ILsypsL 179 (313)
T KOG1407|consen 104 ETKGENINITWSP-DGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGL---GCVEILSYPSL 179 (313)
T ss_pred eccCcceEEEEcC-CCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCC---ceEEEEecccc
Confidence 1111111233333 577888888899999999999986544433 566677776 44444444443 66788888777
Q ss_pred cEEEEEEeecccCCc---cchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc-CeE
Q 016020 261 TVLKVFYHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTV 336 (396)
Q Consensus 261 ~~l~s~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti 336 (396)
|++.+++ +|+.. |.|-+ +|.|+.++.-|....+||+--=-|.++-.-..-+.+..=|+|++++.-+.|. ..|
T Consensus 180 kpv~si~---AH~snCicI~f~p-~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~I 255 (313)
T KOG1407|consen 180 KPVQSIK---AHPSNCICIEFDP-DGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFI 255 (313)
T ss_pred ccccccc---cCCcceEEEEECC-CCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceE
Confidence 7888877 66666 88888 9999999999999999999876666666677788899999999999998888 688
Q ss_pred EEEecc
Q 016020 337 AVWNFR 342 (396)
Q Consensus 337 ~iWd~~ 342 (396)
+|=++.
T Consensus 256 DIA~ve 261 (313)
T KOG1407|consen 256 DIAEVE 261 (313)
T ss_pred EeEecc
Confidence 776554
No 159
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=96.25 E-value=1.1 Score=44.57 Aligned_cols=133 Identities=19% Similarity=0.262 Sum_probs=80.8
Q ss_pred CcEEEeecCCCeEEEEeccCceEEEEeccCceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeeccc--CCc
Q 016020 198 GKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHR--NKK 275 (396)
Q Consensus 198 gkIlt~~a~d~~YrVwdlknYs~lysIs~~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~--sk~ 275 (396)
|.+.+. ..++.+.-.|+++.+.+.+-.-.....+.+.+|.+.+... .-.+..++.+||+.+-....+..+ +.+
T Consensus 257 ~~vy~~-~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~vy~~~~----~g~l~ald~~tG~~~W~~~~~~~~~~~sp 331 (394)
T PRK11138 257 GVVYAL-AYNGNLVALDLRSGQIVWKREYGSVNDFAVDGGRIYLVDQ----NDRVYALDTRGGVELWSQSDLLHRLLTAP 331 (394)
T ss_pred CEEEEE-EcCCeEEEEECCCCCEEEeecCCCccCcEEECCEEEEEcC----CCeEEEEECCCCcEEEcccccCCCcccCC
Confidence 344432 3456677777777776665443333345566666655432 345888899999887654321111 112
Q ss_pred cchhhhhcceeeEeecCCeeeEEEcccceEEEecccccC-CCceEEEeecCeEEEEEEcCeEEEEe
Q 016020 276 VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFM-TPSAFIFLYENQLFLTFRNRTVAVWN 340 (396)
Q Consensus 276 i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~-~PsAFiFly~~qLFLTfs~gti~iWd 340 (396)
+ ..+++|++..+++.|.++|..+++++--.+.... ..+. -...++.||+.-.+|++-..+
T Consensus 332 ~----v~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~-P~~~~~~l~v~t~~G~l~~~~ 392 (394)
T PRK11138 332 V----LYNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSE-PVVADDKLLIQARDGTVYAIT 392 (394)
T ss_pred E----EECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeC-CEEECCEEEEEeCCceEEEEe
Confidence 2 2589999999999999999999998753322110 1111 123578899988888765443
No 160
>PRK00178 tolB translocation protein TolB; Provisional
Probab=96.21 E-value=0.83 Score=45.74 Aligned_cols=151 Identities=10% Similarity=0.127 Sum_probs=91.6
Q ss_pred eEEeeCCCCcEEEeecC-CC--eEEEEeccCceEEEEecc--CceEEEEEcCC-eEEEEEecCCCeeeeEEEEeecCcEE
Q 016020 190 FVEFDDVNGKVLTYSAQ-DS--IYKVFDLKNYTMLYSISD--KHVQEIKISPG-IMLLIFNRSSSHVPLKILSIEDGTVL 263 (396)
Q Consensus 190 fVEFDd~NgkIlt~~a~-d~--~YrVwdlknYs~lysIs~--~~VqEIkiSpg-~~Ll~~q~~~~~iplkIl~IetG~~l 263 (396)
.+.|.+ +|+-+++... ++ .+.+||+.+.+ +..+++ ....+..+||+ -.+++........-+-++++.+|+..
T Consensus 247 ~~~~Sp-DG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~ 324 (430)
T PRK00178 247 APAWSP-DGSKLAFVLSKDGNPEIYVMDLASRQ-LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAE 324 (430)
T ss_pred CeEECC-CCCEEEEEEccCCCceEEEEECCCCC-eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEE
Confidence 467777 7776665433 33 57777998865 345554 23556788864 44444433333445667788888753
Q ss_pred EEEEeecccCCccchhhhhcceeeEeec-CC--eeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc----CeE
Q 016020 264 KVFYHLLHRNKKVDFIEQFNEKLLVKQE-NE--NLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN----RTV 336 (396)
Q Consensus 264 ~s~~~~L~~sk~i~FiE~~~ekLLIKQe-d~--~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~----gti 336 (396)
. +...-.....+.|.+ .+.+|+.-.. ++ .|-++|+.+++...+..+. ......|.++++.++-.++ ..+
T Consensus 325 ~-lt~~~~~~~~~~~Sp-dg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~~--~~~~p~~spdg~~i~~~~~~~g~~~l 400 (430)
T PRK00178 325 R-VTFVGNYNARPRLSA-DGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDTS--LDESPSVAPNGTMLIYATRQQGRGVL 400 (430)
T ss_pred E-eecCCCCccceEECC-CCCEEEEEEccCCceEEEEEECCCCCEEEccCCC--CCCCceECCCCCEEEEEEecCCceEE
Confidence 3 221111223356666 7888876543 32 5888999999887764432 2234478998887655554 357
Q ss_pred EEEeccccee
Q 016020 337 AVWNFRGELV 346 (396)
Q Consensus 337 ~iWd~~geL~ 346 (396)
.+++++|...
T Consensus 401 ~~~~~~g~~~ 410 (430)
T PRK00178 401 MLVSINGRVR 410 (430)
T ss_pred EEEECCCCce
Confidence 7888888533
No 161
>PRK04792 tolB translocation protein TolB; Provisional
Probab=96.14 E-value=0.35 Score=49.68 Aligned_cols=147 Identities=10% Similarity=0.130 Sum_probs=86.6
Q ss_pred EeeCCCCcEEEeecCC---CeEEEEeccCceE--EEEeccCceEEEEEcCC-eEEEEEecCCCeeeeEEEEeecCcEEEE
Q 016020 192 EFDDVNGKVLTYSAQD---SIYKVFDLKNYTM--LYSISDKHVQEIKISPG-IMLLIFNRSSSHVPLKILSIEDGTVLKV 265 (396)
Q Consensus 192 EFDd~NgkIlt~~a~d---~~YrVwdlknYs~--lysIs~~~VqEIkiSpg-~~Ll~~q~~~~~iplkIl~IetG~~l~s 265 (396)
.|++ +|+.|+|.+.+ ..+.+||+.+.+. +-... ......+|||+ -.|++.....+..-+-++++++|+...-
T Consensus 224 ~wSP-DG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~-g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~l 301 (448)
T PRK04792 224 AWSP-DGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFP-GINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRI 301 (448)
T ss_pred eECC-CCCEEEEEEecCCCcEEEEEECCCCCeEEecCCC-CCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEEC
Confidence 4566 78888876542 3577889887763 32222 23457899964 4555555555556688889998875432
Q ss_pred EEeecccCCccchhhhhcceeeEeec-CC--eeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc--Ce--EEE
Q 016020 266 FYHLLHRNKKVDFIEQFNEKLLVKQE-NE--NLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN--RT--VAV 338 (396)
Q Consensus 266 ~~~~L~~sk~i~FiE~~~ekLLIKQe-d~--~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~--gt--i~i 338 (396)
.... .....+.|.+ .+.+|++..+ ++ .|-++|+.+++..++.... .....-.|.++++.++..+. +. |-+
T Consensus 302 t~~~-~~~~~p~wSp-DG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g-~~~~~~~~SpDG~~l~~~~~~~g~~~I~~ 378 (448)
T PRK04792 302 TRHR-AIDTEPSWHP-DGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEG-EQNLGGSITPDGRSMIMVNRTNGKFNIAR 378 (448)
T ss_pred ccCC-CCccceEECC-CCCEEEEEECCCCCceEEEEECCCCCEEEEecCC-CCCcCeeECCCCCEEEEEEecCCceEEEE
Confidence 2211 1223467776 8888887664 33 3555688888877753211 12223367888765433332 44 444
Q ss_pred Eeccc
Q 016020 339 WNFRG 343 (396)
Q Consensus 339 Wd~~g 343 (396)
+|+++
T Consensus 379 ~dl~~ 383 (448)
T PRK04792 379 QDLET 383 (448)
T ss_pred EECCC
Confidence 67766
No 162
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=96.14 E-value=0.41 Score=46.93 Aligned_cols=132 Identities=14% Similarity=0.116 Sum_probs=79.5
Q ss_pred CeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEec-CCCeeeeEEEEeecCcEEEEEEeecccCCccchhhhhcc
Q 016020 208 SIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNR-SSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNE 284 (396)
Q Consensus 208 ~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~-~~~~iplkIl~IetG~~l~s~~~~L~~sk~i~FiE~~~e 284 (396)
..+.++|..+. ....+.+ ..+...++||+--.|++.. ..+.--+.+|++.+|+......+. .....+.|.+ .++
T Consensus 170 ~~l~~~d~~g~-~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~-~~~~~~~~sp-Dg~ 246 (417)
T TIGR02800 170 YELQVADYDGA-NPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFP-GMNGAPAFSP-DGS 246 (417)
T ss_pred ceEEEEcCCCC-CCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCC-CCccceEECC-CCC
Confidence 34556666433 2344444 4588889997654444433 333456899999999765433311 1222367777 788
Q ss_pred eeeEe-ecC--CeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc--C--eEEEEeccc
Q 016020 285 KLLVK-QEN--ENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN--R--TVAVWNFRG 343 (396)
Q Consensus 285 kLLIK-Qed--~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~--g--ti~iWd~~g 343 (396)
.|++. ..+ ..|.+||+.+++...+.... .......|.++++.++..++ + .|-+||+.+
T Consensus 247 ~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~-~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~ 311 (417)
T TIGR02800 247 KLAVSLSKDGNPDIYVMDLDGKQLTRLTNGP-GIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADG 311 (417)
T ss_pred EEEEEECCCCCccEEEEECCCCCEEECCCCC-CCCCCEEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 88754 333 35888999998877764322 22334567888876554444 3 466778776
No 163
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=96.09 E-value=0.38 Score=48.84 Aligned_cols=235 Identities=18% Similarity=0.182 Sum_probs=162.2
Q ss_pred EecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcceeecccCCCCeEEeeCCCCcEEE
Q 016020 123 FLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLT 202 (396)
Q Consensus 123 ~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF~~~~l~~PgfVEFDd~NgkIlt 202 (396)
.|+..|.+-|-+|=|...+.-|++.| =+ .+|.-+.++...+ ++++.-+-||-... |=| ..-+.
T Consensus 7 ~l~npP~d~IS~v~f~~~~~~LLvss----WD-gslrlYdv~~~~l-~~~~~~~~plL~c~---------F~d--~~~~~ 69 (323)
T KOG1036|consen 7 ELENPPEDGISSVKFSPSSSDLLVSS----WD-GSLRLYDVPANSL-KLKFKHGAPLLDCA---------FAD--ESTIV 69 (323)
T ss_pred ccCCCChhceeeEEEcCcCCcEEEEe----cc-CcEEEEeccchhh-hhheecCCceeeee---------ccC--CceEE
Confidence 57888899999998884444444433 22 5677777776644 45666677766542 222 33445
Q ss_pred eecCCCeEEEEeccCceEEEEecc-CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCccchhhh
Q 016020 203 YSAQDSIYKVFDLKNYTMLYSISD-KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQ 281 (396)
Q Consensus 203 ~~a~d~~YrVwdlknYs~lysIs~-~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~i~FiE~ 281 (396)
....|+++|+.|+.+..-..--++ +.|+.|--+++.-.++..+= +-.+|+||--+......+. ..++|-=+-+
T Consensus 70 ~G~~dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~~vIsgsW--D~~ik~wD~R~~~~~~~~d----~~kkVy~~~v 143 (323)
T KOG1036|consen 70 TGGLDGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVGCVISGSW--DKTIKFWDPRNKVVVGTFD----QGKKVYCMDV 143 (323)
T ss_pred EeccCceEEEEEecCCcceeeccCCCceEEEEeeccCCeEEEccc--CccEEEEeccccccccccc----cCceEEEEec
Confidence 567899999999999997777776 89999999988888888877 6778889877633333232 3445555667
Q ss_pred hcceeeEeecCCeeeEEEcccceEEEec--ccccCCCceEEEeecCeEEEEEEc-CeEEEEecccc-----eeeeecccc
Q 016020 282 FNEKLLVKQENENLQILDVRNAELMEVS--RTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNFRGE-----LVTSFEDHL 353 (396)
Q Consensus 282 ~~ekLLIKQed~~L~I~Dv~~~ki~~v~--~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~~ge-----L~t~fedh~ 353 (396)
-++.|+++-.|..++|||+++-+.-... ..-.++.++.-++|+++=|+.-|= |-|.+=.++.. .+-.|-=|-
T Consensus 144 ~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr 223 (323)
T KOG1036|consen 144 SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHR 223 (323)
T ss_pred cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeee
Confidence 8999999999999999999996655432 234678899999998887776664 76666555542 444666665
Q ss_pred ccCCC-----CCC-------CcEEEccCCcEEEEeccCC
Q 016020 354 LWHPD-----CNT-------NNIYITSDQDLIISYCKAE 380 (396)
Q Consensus 354 l~~~~-----c~~-------n~~~it~~qd~ii~~~~~~ 380 (396)
+-..+ |++ -.-|.|+.-|=||..-+..
T Consensus 224 ~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~ 262 (323)
T KOG1036|consen 224 LSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLF 262 (323)
T ss_pred cccCCceEEEEeceeEeccccceEEecCCCceEEEccCc
Confidence 54433 222 2347888888777765543
No 164
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=96.06 E-value=0.053 Score=59.61 Aligned_cols=189 Identities=19% Similarity=0.253 Sum_probs=125.5
Q ss_pred cccCCCCeEEeeCCCCcEEEeecCCCeEEEEecc-CceEEEE-----ec--cCceEEEEEc---CCeEEEEEecCCCeee
Q 016020 183 ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLK-NYTMLYS-----IS--DKHVQEIKIS---PGIMLLIFNRSSSHVP 251 (396)
Q Consensus 183 ~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlk-nYs~lys-----Is--~~~VqEIkiS---pg~~Ll~~q~~~~~ip 251 (396)
+-...=||--|+| ..||-+++|..+|+|-|- +-++--| +. +.-|..+++- +|+| +..+ +..
T Consensus 80 d~VtDl~FspF~D---~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil---~s~a--~g~ 151 (1012)
T KOG1445|consen 80 DQVTDLGFSPFAD---ELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGIL---ASGA--HGS 151 (1012)
T ss_pred ceeeccCccccch---hhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceE---Eecc--Cce
Confidence 4455567778887 678889999999999997 4333221 11 1345566665 4444 3333 467
Q ss_pred eEEEEeecCcEEEEEEeecccCCc---cchhhhhcceeeEeecCCeeeEEEcccc-eEEEecccc-cCCCceEEEeecCe
Q 016020 252 LKILSIEDGTVLKVFYHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNA-ELMEVSRTE-FMTPSAFIFLYENQ 326 (396)
Q Consensus 252 lkIl~IetG~~l~s~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~-ki~~v~~t~-~~~PsAFiFly~~q 326 (396)
++||||.|++.+.++. .|.-. .+..| +|..|...-+|.+|+|||-+.+ +-+.+..+| .|--+-.+|.-+-+
T Consensus 152 v~i~D~stqk~~~el~---~h~d~vQSa~Wse-DG~llatscKdkqirifDPRa~~~piQ~te~H~~~rdsRv~w~Gn~~ 227 (1012)
T KOG1445|consen 152 VYITDISTQKTAVELS---GHTDKVQSADWSE-DGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSRVLWAGNWE 227 (1012)
T ss_pred EEEEEcccCceeeccc---CCchhhhcccccc-CCceEeeecCCcceEEeCCccCCCccccccccccchhheeeeccchh
Confidence 8999999999999988 77666 45677 8999999999999999999873 333332333 44445555654422
Q ss_pred E-----EEEEEcCeEEEEeccc--ceeeeec-----cccccCCCCCCCcEEEccCCcEEEEeccCCCCC
Q 016020 327 L-----FLTFRNRTVAVWNFRG--ELVTSFE-----DHLLWHPDCNTNNIYITSDQDLIISYCKAEPED 383 (396)
Q Consensus 327 L-----FLTfs~gti~iWd~~g--eL~t~fe-----dh~l~~~~c~~n~~~it~~qd~ii~~~~~~~~~ 383 (396)
- |=+-+-+.|.+||++- .-+.++| +-+..+.+.-++-+|++..-|--+-|..-...+
T Consensus 228 rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaGKG~~~l~~lE~~d~q 296 (1012)
T KOG1445|consen 228 RLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAGKGTNKLFMLEMQDRQ 296 (1012)
T ss_pred hhhhcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEecCCcceEEEEEecCCC
Confidence 2 6677779999999985 3333332 344556667778888887766655555444333
No 165
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=95.96 E-value=0.07 Score=56.03 Aligned_cols=161 Identities=14% Similarity=0.157 Sum_probs=113.2
Q ss_pred CcceeecccCCCCe---EEeeCCCCcEEEeecCCCeEEEEeccCc------e--EEEEecc-CceEEEEEcCCeEEEEEe
Q 016020 177 FALFESESLKWPGF---VEFDDVNGKVLTYSAQDSIYKVFDLKNY------T--MLYSISD-KHVQEIKISPGIMLLIFN 244 (396)
Q Consensus 177 ~~LF~~~~l~~Pgf---VEFDd~NgkIlt~~a~d~~YrVwdlknY------s--~lysIs~-~~VqEIkiSpg~~Ll~~q 244 (396)
+||.+++.+.|-|- ++|.+ ||++|++...|-..+||.|.-- + .+..=.. -+|-++.+--|--.+.+.
T Consensus 45 R~~~qKD~~~H~GCiNAlqFS~-N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG 123 (609)
T KOG4227|consen 45 RPFCQKDVREHTGCINALQFSH-NDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSG 123 (609)
T ss_pred cchhhhhhhhhccccceeeecc-CCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecC
Confidence 67888888888886 59999 8999999999999999998532 2 2222222 567777777776666666
Q ss_pred cCCCeeeeEEEEeecCcEEEEEEeecccCCc--cchhhhhcceeeEeecCCeeeEEEcccceE-E-EecccccCCCceEE
Q 016020 245 RSSSHVPLKILSIEDGTVLKVFYHLLHRNKK--VDFIEQFNEKLLVKQENENLQILDVRNAEL-M-EVSRTEFMTPSAFI 320 (396)
Q Consensus 245 ~~~~~iplkIl~IetG~~l~s~~~~L~~sk~--i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki-~-~v~~t~~~~PsAFi 320 (396)
.. .-.+.+-|||+.+-++-+++-=.+..- ++-.+. ..-+++-..++.+.|||++.+.- + -+. -.+.|++|+
T Consensus 124 ~~--~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~-DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~--~AN~~~~F~ 198 (609)
T KOG4227|consen 124 ER--WGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPT-DNTLIVVTRAKLVSFIDNRDRQNPISLVL--PANSGKNFY 198 (609)
T ss_pred CC--cceeEeeecccceeeeeecccCcccceeecccCCC-CceEEEEecCceEEEEeccCCCCCCceee--ecCCCccce
Confidence 55 667788899999999988832111111 444453 45666777999999999998661 1 122 234677775
Q ss_pred ---Eee-cCeEEEEEEc-CeEEEEeccc
Q 016020 321 ---FLY-ENQLFLTFRN-RTVAVWNFRG 343 (396)
Q Consensus 321 ---Fly-~~qLFLTfs~-gti~iWd~~g 343 (396)
|.| +-.|.+|-+. +-+-+||.+-
T Consensus 199 t~~F~P~~P~Li~~~~~~~G~~~~D~R~ 226 (609)
T KOG4227|consen 199 TAEFHPETPALILVNSETGGPNVFDRRM 226 (609)
T ss_pred eeeecCCCceeEEeccccCCCCceeecc
Confidence 555 4567777777 8999999876
No 166
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=95.95 E-value=1.9 Score=42.52 Aligned_cols=155 Identities=14% Similarity=0.181 Sum_probs=101.8
Q ss_pred CCCCeEEeeCCCCcEEEeecCCCeEEEEeccC-ceEEEEe---------------ccCceEEEEEcCC-eEEEEEecCCC
Q 016020 186 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN-YTMLYSI---------------SDKHVQEIKISPG-IMLLIFNRSSS 248 (396)
Q Consensus 186 ~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlkn-Ys~lysI---------------s~~~VqEIkiSpg-~~Ll~~q~~~~ 248 (396)
..|-++.+|+....+++++-.++++-||++.. .+.--.. ...+.+++.++|+ -.|++..--.
T Consensus 87 ~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~- 165 (345)
T PF10282_consen 87 SSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGA- 165 (345)
T ss_dssp SCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTT-
T ss_pred CCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCC-
Confidence 57899999997777888888899999999987 4432221 2367889999976 4444433332
Q ss_pred eeeeEEEEeecCcE-EEE-EEeecccCCc---cchhhhhcceeeEee-cCCeeeEEEcc--cceEEE-----eccc---c
Q 016020 249 HVPLKILSIEDGTV-LKV-FYHLLHRNKK---VDFIEQFNEKLLVKQ-ENENLQILDVR--NAELME-----VSRT---E 312 (396)
Q Consensus 249 ~iplkIl~IetG~~-l~s-~~~~L~~sk~---i~FiE~~~ekLLIKQ-ed~~L~I~Dv~--~~ki~~-----v~~t---~ 312 (396)
=-+.++++.+++. |.. -...++...- +.|-+ .+.++++-. .++.|.+|++. ++++.. +.++ .
T Consensus 166 -D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~p-dg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~ 243 (345)
T PF10282_consen 166 -DRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSP-DGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTG 243 (345)
T ss_dssp -TEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-T-TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCS
T ss_pred -CEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcC-CcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccc
Confidence 2578888877652 332 1222343332 88888 788886665 56669999999 555443 2211 2
Q ss_pred cCCCceEEEeecCe-EEEEEEc-CeEEEEeccc
Q 016020 313 FMTPSAFIFLYENQ-LFLTFRN-RTVAVWNFRG 343 (396)
Q Consensus 313 ~~~PsAFiFly~~q-LFLTfs~-gti~iWd~~g 343 (396)
...|++..+.++++ ||++-+. ++|.++++++
T Consensus 244 ~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~ 276 (345)
T PF10282_consen 244 ENAPAEIAISPDGRFLYVSNRGSNSISVFDLDP 276 (345)
T ss_dssp SSSEEEEEE-TTSSEEEEEECTTTEEEEEEECT
T ss_pred cCCceeEEEecCCCEEEEEeccCCEEEEEEEec
Confidence 23788999998876 5777766 8999999954
No 167
>PRK04792 tolB translocation protein TolB; Provisional
Probab=95.95 E-value=0.2 Score=51.52 Aligned_cols=129 Identities=13% Similarity=0.116 Sum_probs=77.8
Q ss_pred EEeccCceE-EEEeccCceEEEEEcCCe-EEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCccchhhhhcceeeE-
Q 016020 212 VFDLKNYTM-LYSISDKHVQEIKISPGI-MLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLV- 288 (396)
Q Consensus 212 VwdlknYs~-lysIs~~~VqEIkiSpg~-~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~i~FiE~~~ekLLI- 288 (396)
++|..+... ...=+.+.+...+|||+- .|+.....+...-|.++++.+|+...-... -.....+.|.+ .|++|++
T Consensus 202 i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~-~g~~~~~~wSP-DG~~La~~ 279 (448)
T PRK04792 202 IADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSF-PGINGAPRFSP-DGKKLALV 279 (448)
T ss_pred EEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCC-CCCcCCeeECC-CCCEEEEE
Confidence 346555432 111223678889999764 344433334455688899999986443221 12334578887 8888876
Q ss_pred eecCCe--eeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc--CeEEE--Eeccc
Q 016020 289 KQENEN--LQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN--RTVAV--WNFRG 343 (396)
Q Consensus 289 KQed~~--L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~--gti~i--Wd~~g 343 (396)
..++++ |-++|+.+++...+.... .......|.++++.++..++ |...| ||+.+
T Consensus 280 ~~~~g~~~Iy~~dl~tg~~~~lt~~~-~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~ 339 (448)
T PRK04792 280 LSKDGQPEIYVVDIATKALTRITRHR-AIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLAS 339 (448)
T ss_pred EeCCCCeEEEEEECCCCCeEECccCC-CCccceEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 445554 777799999888765432 34456678998875444444 44455 46654
No 168
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=95.91 E-value=0.067 Score=59.42 Aligned_cols=136 Identities=18% Similarity=0.176 Sum_probs=99.6
Q ss_pred cCCCeEEEEeccCceEEEEe--ccCceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccC---Cccchh
Q 016020 205 AQDSIYKVFDLKNYTMLYSI--SDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRN---KKVDFI 279 (396)
Q Consensus 205 a~d~~YrVwdlknYs~lysI--s~~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~s---k~i~Fi 279 (396)
+..-.+-+||.+--++-|-+ +-+.+..++||+.=-.++...-.-.-.+|+|+++.-....+|. -|. --+.|.
T Consensus 55 pAGCvVVlfn~~~~tQ~hlvnssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~vVAEfv---dHKY~vtcvaFs 131 (1080)
T KOG1408|consen 55 PAGCVVVLFNVDSCTQSHLVNSSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAFHGVVAEFV---DHKYNVTCVAFS 131 (1080)
T ss_pred ccCcEEEEEcccccchhheecccCcceeEEEEcCCCcEEEecccCCCccceeeeeccccchhhhh---hccccceeeeec
Confidence 45667788998877755444 4599999999976666666654334558999999987777766 231 128888
Q ss_pred hhhcceeeE--eecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEcCeEEEEecccce
Q 016020 280 EQFNEKLLV--KQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGEL 345 (396)
Q Consensus 280 E~~~ekLLI--KQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~gti~iWd~~geL 345 (396)
+ -+.||.. -|.|-.+++||-+-+-- --++-..--.+|.-|.-++.+|+|.-++-|++|.++++.
T Consensus 132 p-~~kyvvSVGsQHDMIVnv~dWr~N~~-~asnkiss~Vsav~fsEdgSYfvT~gnrHvk~wyl~~~~ 197 (1080)
T KOG1408|consen 132 P-GNKYVVSVGSQHDMIVNVNDWRVNSS-GASNKISSVVSAVAFSEDGSYFVTSGNRHVKLWYLQIQS 197 (1080)
T ss_pred C-CCcEEEeeccccceEEEhhhhhhccc-ccccccceeEEEEEEccCCceeeeeeeeeEEEEEeeccc
Confidence 8 7888773 57888899997654321 122333444689999999999999999999999999853
No 169
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=95.91 E-value=1.3 Score=44.76 Aligned_cols=147 Identities=14% Similarity=0.226 Sum_probs=114.9
Q ss_pred EEeeCCCCcEEEeecCCCeEEEEeccC--ceEEEEecc--CceEEEEEcC-CeEEEEEecCCCeeeeEEEEeecCcEEEE
Q 016020 191 VEFDDVNGKVLTYSAQDSIYKVFDLKN--YTMLYSISD--KHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKV 265 (396)
Q Consensus 191 VEFDd~NgkIlt~~a~d~~YrVwdlkn--Ys~lysIs~--~~VqEIkiSp-g~~Ll~~q~~~~~iplkIl~IetG~~l~s 265 (396)
|-+.| -|+.||.-+=|++.-+|--.+ ++++=.|.+ .+|+.|.+|+ |-.|+.-.+. ..+=||-+.-+.+.--
T Consensus 67 vAwsp-~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRD---KSVWiWe~deddEfec 142 (312)
T KOG0645|consen 67 VAWSP-HGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRD---KSVWIWEIDEDDEFEC 142 (312)
T ss_pred eeecC-CCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCC---CeEEEEEecCCCcEEE
Confidence 44555 799999999999999998774 457788887 8999999994 5555555555 5667777765554443
Q ss_pred EEeecccCCc---cchhhhhcceeeEeecCCeeeEEEcc---cceEEEecccccCCCceEEEeecCeEEEEEEc-CeEEE
Q 016020 266 FYHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVR---NAELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAV 338 (396)
Q Consensus 266 ~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~---~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~i 338 (396)
.-.+.+|+-+ +.|-+ ..+.|..-.=|..+++|+=- .=++..++.++..+.-+..|-+.++-+++-++ ++++|
T Consensus 143 ~aVL~~HtqDVK~V~WHP-t~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~I 221 (312)
T KOG0645|consen 143 IAVLQEHTQDVKHVIWHP-TEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSI 221 (312)
T ss_pred EeeeccccccccEEEEcC-CcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEe
Confidence 4445577766 56655 66889999999999999877 34678888999999999999999999898888 99999
Q ss_pred Eecc
Q 016020 339 WNFR 342 (396)
Q Consensus 339 Wd~~ 342 (396)
|=..
T Consensus 222 w~~~ 225 (312)
T KOG0645|consen 222 WRLY 225 (312)
T ss_pred eeec
Confidence 9855
No 170
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=95.87 E-value=0.024 Score=62.73 Aligned_cols=174 Identities=14% Similarity=0.282 Sum_probs=120.1
Q ss_pred ceee-cccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccC---ceEEEEecc--CceEEEEEcC-CeEEEEEecCCCeee
Q 016020 179 LFES-ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN---YTMLYSISD--KHVQEIKISP-GIMLLIFNRSSSHVP 251 (396)
Q Consensus 179 LF~~-~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlkn---Ys~lysIs~--~~VqEIkiSp-g~~Ll~~q~~~~~ip 251 (396)
+|.+ --.+|- -|++ --||-.+..+.+-||||-- -++||.+.. ..|..+-|++ .-.+|++.+- +.-
T Consensus 86 ~~~S~~DVkW~---~~~~---NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQ--Dg~ 157 (839)
T KOG0269|consen 86 KFYSAADVKWG---QLYS---NLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQ--DGT 157 (839)
T ss_pred eeeehhhcccc---cchh---hhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCC--Cce
Confidence 4544 445665 4454 2455567788899999987 567676665 5677777773 3344566665 788
Q ss_pred eEEEEeecCcEEEEEEeecccCCccchhhhhcceeeEeecCCeeeEEEccc-ceEEEecccccCCCceEEEeecCeEEEE
Q 016020 252 LKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN-AELMEVSRTEFMTPSAFIFLYENQLFLT 330 (396)
Q Consensus 252 lkIl~IetG~~l~s~~~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~-~ki~~v~~t~~~~PsAFiFly~~qLFLT 330 (396)
+|+||+-..+-.-++.--=-.-.+|.|++-.+.+-...-|++.||.|||+- .++.....+|.-+..+.=..|++++.-|
T Consensus 158 vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lAT 237 (839)
T KOG0269|consen 158 VKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLAT 237 (839)
T ss_pred EEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeee
Confidence 999999876655555421122234999999999999999999999999998 4555577788888888878884444433
Q ss_pred E-EcCeEEEEecccc---eeeeec-----cccccCCCCC
Q 016020 331 F-RNRTVAVWNFRGE---LVTSFE-----DHLLWHPDCN 360 (396)
Q Consensus 331 f-s~gti~iWd~~ge---L~t~fe-----dh~l~~~~c~ 360 (396)
= +|+.|+|||..+. .+-.++ ..+-|-|.|.
T Consensus 238 GGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~ 276 (839)
T KOG0269|consen 238 GGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARS 276 (839)
T ss_pred cCCCccEEEEeccCCCccceeEEeecceeeeeeeccCcc
Confidence 2 4589999999962 222222 4566777766
No 171
>KOG4328 consensus WD40 protein [Function unknown]
Probab=95.87 E-value=0.046 Score=57.68 Aligned_cols=187 Identities=16% Similarity=0.163 Sum_probs=122.0
Q ss_pred EEeeCCCC-cEEEeecCCCeEEEEec----cCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCc--
Q 016020 191 VEFDDVNG-KVLTYSAQDSIYKVFDL----KNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGT-- 261 (396)
Q Consensus 191 VEFDd~Ng-kIlt~~a~d~~YrVwdl----knYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~-- 261 (396)
++|=+.-- +++|...--|.+-+||+ +++.-+|-... .-|..|+++|----.++. ...+..+.+-|++++.
T Consensus 192 l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~s-sSyDGtiR~~D~~~~i~e 270 (498)
T KOG4328|consen 192 LAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYS-SSYDGTIRLQDFEGNISE 270 (498)
T ss_pred EEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheee-eccCceeeeeeecchhhH
Confidence 45655444 89999999999999999 45555555543 679999999654332222 2245788888888864
Q ss_pred EEEEEEeecccCCccchhhhhcceeeEeecCCeeeEEEcccceE-EEecccccCCCceEEEeecC-eEEEEEEc-CeEEE
Q 016020 262 VLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAEL-MEVSRTEFMTPSAFIFLYEN-QLFLTFRN-RTVAV 338 (396)
Q Consensus 262 ~l~s~~~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki-~~v~~t~~~~PsAFiFly~~-qLFLTfs~-gti~i 338 (396)
++++++-.=.-=..+||.. .+..+|+.+.=+++..||+++.+- ++-.+-|.+......+.|-. +++.|.+. +|.+|
T Consensus 271 ~v~s~~~d~~~fs~~d~~~-e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kI 349 (498)
T KOG4328|consen 271 EVLSLDTDNIWFSSLDFSA-ESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKI 349 (498)
T ss_pred HHhhcCccceeeeeccccC-CCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceee
Confidence 3344420000112378887 566677777766999999999666 77777888888888888854 55667776 89999
Q ss_pred Eeccc-ceeee-----ecccccc--CCCCCCCcEEEccCCcEEEEeccC
Q 016020 339 WNFRG-ELVTS-----FEDHLLW--HPDCNTNNIYITSDQDLIISYCKA 379 (396)
Q Consensus 339 Wd~~g-eL~t~-----fedh~l~--~~~c~~n~~~it~~qd~ii~~~~~ 379 (396)
||++- .-+.+ ++-..+- +-+.|++--.+|..||==|--..+
T Consensus 350 WD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~ds 398 (498)
T KOG4328|consen 350 WDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDS 398 (498)
T ss_pred eehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeec
Confidence 99987 33332 2222221 222455444778888755544333
No 172
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=95.67 E-value=0.088 Score=57.18 Aligned_cols=186 Identities=18% Similarity=0.269 Sum_probs=129.7
Q ss_pred EEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcceeecccCCCCeEEeeCCCCcEEEeecCCCeEEE
Q 016020 133 RSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKV 212 (396)
Q Consensus 133 rsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF~~~~l~~PgfVEFDd~NgkIlt~~a~d~~YrV 212 (396)
|.+-||+-+-.|..| .++ .-.+-++ |.+|.+-.+ |++.+ .-=--|+-++.||=+ +....++.+-+
T Consensus 137 RDm~y~~~scDly~~--gsg-----~evYRlN---LEqGrfL~P---~~~~~-~~lN~v~in~~hgLl-a~Gt~~g~VEf 201 (703)
T KOG2321|consen 137 RDMKYHKPSCDLYLV--GSG-----SEVYRLN---LEQGRFLNP---FETDS-GELNVVSINEEHGLL-ACGTEDGVVEF 201 (703)
T ss_pred ccccccCCCccEEEe--ecC-----cceEEEE---ccccccccc---ccccc-ccceeeeecCccceE-EecccCceEEE
Confidence 667788887777773 322 2223332 233332211 33321 001247788888854 44666999999
Q ss_pred EeccCceEEEEecc-Cc------------eEEEEEcC-CeEEEEEecCCCeeeeEEEEeecCcEEEEEEee--cccCCcc
Q 016020 213 FDLKNYTMLYSISD-KH------------VQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHL--LHRNKKV 276 (396)
Q Consensus 213 wdlknYs~lysIs~-~~------------VqEIkiSp-g~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~--L~~sk~i 276 (396)
||+++=+..-++.. .+ |..+++++ |+.+.+-..+ ..+-|+|+-+.+++..-.|. ++. +.+
T Consensus 202 wDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~---G~v~iyDLRa~~pl~~kdh~~e~pi-~~l 277 (703)
T KOG2321|consen 202 WDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTST---GSVLIYDLRASKPLLVKDHGYELPI-KKL 277 (703)
T ss_pred ecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccC---CcEEEEEcccCCceeecccCCccce-eee
Confidence 99999997766665 33 99999998 8888777666 66779999999999866532 222 448
Q ss_pred chhhhhcceeeEeecCCeeeEEEcccceEEEe-cccccCCCceEEEeecCeEEEEEEc-CeEEEE
Q 016020 277 DFIEQFNEKLLVKQENENLQILDVRNAELMEV-SRTEFMTPSAFIFLYENQLFLTFRN-RTVAVW 339 (396)
Q Consensus 277 ~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v-~~t~~~~PsAFiFly~~qLFLTfs~-gti~iW 339 (396)
+|+....+.-++--+...|+|||=-+||.+-. -+|. ..--|-|++++.+||+.-+ ..+..|
T Consensus 278 ~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt~--~lND~C~~p~sGm~f~Ane~~~m~~y 340 (703)
T KOG2321|consen 278 DWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEPTS--DLNDFCFVPGSGMFFTANESSKMHTY 340 (703)
T ss_pred cccccCCCceEEecchHHhhhcccccCCceeeccccC--CcCceeeecCCceEEEecCCCcceeE
Confidence 88888888888889999999999999998863 3333 2677889999999999877 455444
No 173
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=95.60 E-value=0.03 Score=58.98 Aligned_cols=73 Identities=21% Similarity=0.290 Sum_probs=65.1
Q ss_pred hhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEee-cCeEEEEEEcCeEEEEeccc-ceeeeecccc
Q 016020 281 QFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLY-ENQLFLTFRNRTVAVWNFRG-ELVTSFEDHL 353 (396)
Q Consensus 281 ~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly-~~qLFLTfs~gti~iWd~~g-eL~t~fedh~ 353 (396)
.+|.||+.+--|.-++|||..|.+=+++...|-...+..-|-+ +++||.+--|++|++|+.+- ..+.++=+|.
T Consensus 212 ~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHq 286 (479)
T KOG0299|consen 212 SDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQ 286 (479)
T ss_pred CCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCc
Confidence 3799999999999999999999999999999999999999966 78999999999999999998 5666665553
No 174
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=95.59 E-value=0.12 Score=58.66 Aligned_cols=147 Identities=12% Similarity=0.146 Sum_probs=112.3
Q ss_pred EEEEcCCeEEEEEecCCCeeeeEEEEeecCc-E--------EEEEEeecccCCc---cchhhhhcceeeEeecCCeeeEE
Q 016020 231 EIKISPGIMLLIFNRSSSHVPLKILSIEDGT-V--------LKVFYHLLHRNKK---VDFIEQFNEKLLVKQENENLQIL 298 (396)
Q Consensus 231 EIkiSpg~~Ll~~q~~~~~iplkIl~IetG~-~--------l~s~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~ 298 (396)
.|-++|+-..+...+...+-...||+.+-=- + -+.+.....|... +.|.. .|+||.++.||.-+.||
T Consensus 18 SIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~-dG~~lAsGSDD~~v~iW 96 (942)
T KOG0973|consen 18 SIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSP-DGSYLASGSDDRLVMIW 96 (942)
T ss_pred EEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECC-CCCeEeeccCcceEEEe
Confidence 3448888888888876555556688876511 1 1112222233333 55666 99999999999999999
Q ss_pred Eccc-------c-----------eEEEecccccCCCceEEEeecCeEEEEEEc-CeEEEEeccc-ceeeeeccccccCCC
Q 016020 299 DVRN-------A-----------ELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNFRG-ELVTSFEDHLLWHPD 358 (396)
Q Consensus 299 Dv~~-------~-----------ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~~g-eL~t~fedh~l~~~~ 358 (396)
.-.. + +.+.++++|.+...-.-..|++.++++.+. ++|-|||..- ++++.+++|...+--
T Consensus 97 ~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKG 176 (942)
T KOG0973|consen 97 ERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKG 176 (942)
T ss_pred eecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeecccccccc
Confidence 9882 1 356688999999999999999999999998 9999999998 999999999987654
Q ss_pred ---CCCCcEEEccCCcEEEEecc
Q 016020 359 ---CNTNNIYITSDQDLIISYCK 378 (396)
Q Consensus 359 ---c~~n~~~it~~qd~ii~~~~ 378 (396)
=|.+++|-|-.-|=.|=+.+
T Consensus 177 vs~DP~Gky~ASqsdDrtikvwr 199 (942)
T KOG0973|consen 177 VSWDPIGKYFASQSDDRTLKVWR 199 (942)
T ss_pred eEECCccCeeeeecCCceEEEEE
Confidence 68899998888887776666
No 175
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=95.49 E-value=0.035 Score=56.26 Aligned_cols=98 Identities=21% Similarity=0.178 Sum_probs=78.9
Q ss_pred cCCCeEEEEeccCceEEEEeccCceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCccchhhhhcc
Q 016020 205 AQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNE 284 (396)
Q Consensus 205 a~d~~YrVwdlknYs~lysIs~~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~i~FiE~~~e 284 (396)
.+|++.+.||++++++.|+|.+-+.|- ...+||.+----
T Consensus 190 t~d~tl~~~D~RT~~~~~sI~dAHgq~-----------------------------------------vrdlDfNpnkq~ 228 (370)
T KOG1007|consen 190 TSDSTLQFWDLRTMKKNNSIEDAHGQR-----------------------------------------VRDLDFNPNKQH 228 (370)
T ss_pred eCCCcEEEEEccchhhhcchhhhhcce-----------------------------------------eeeccCCCCceE
Confidence 579999999999999999999655432 234566665555
Q ss_pred eeeEeecCCeeeEEEccc-ceEEEecccccCCCceEEEee-cCeEEEEEEc-CeEEEEeccc
Q 016020 285 KLLVKQENENLQILDVRN-AELMEVSRTEFMTPSAFIFLY-ENQLFLTFRN-RTVAVWNFRG 343 (396)
Q Consensus 285 kLLIKQed~~L~I~Dv~~-~ki~~v~~t~~~~PsAFiFly-~~qLFLTfs~-gti~iWd~~g 343 (396)
+|...-+|+-++|||.++ +.-...+.+|.-+.-+..|.+ .-||.||-++ -.|-+|...+
T Consensus 229 ~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~s 290 (370)
T KOG1007|consen 229 ILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASS 290 (370)
T ss_pred EEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccc
Confidence 667777999999999998 455667889999999999988 6799999988 6888887765
No 176
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=95.48 E-value=0.11 Score=53.46 Aligned_cols=184 Identities=15% Similarity=0.182 Sum_probs=119.0
Q ss_pred EeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc-----CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecC------
Q 016020 192 EFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-----KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDG------ 260 (396)
Q Consensus 192 EFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~-----~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG------ 260 (396)
.|.+.+-.-+.+.+.|..+|+|+.++..++-.+-+ .+|..|-+|+.---+++-+. +-.||+|+|...
T Consensus 142 k~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGm--Dhslk~W~l~~~~f~~~l 219 (385)
T KOG1034|consen 142 KFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGM--DHSLKLWRLNVKEFKNKL 219 (385)
T ss_pred hcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCC--cceEEEEecChhHHhhhh
Confidence 46665666788889999999999999999998877 89999999966555556555 678999999831
Q ss_pred -------------------cEEEEEEeecccCCccchhhhhcceeeEeecCCeeeEEEccc--ceEEEecccccCCCceE
Q 016020 261 -------------------TVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN--AELMEVSRTEFMTPSAF 319 (396)
Q Consensus 261 -------------------~~l~s~~~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~--~ki~~v~~t~~~~PsAF 319 (396)
+....|.-.=.|.++||=+.-||+++|.|.=++.|..|--.. ..+-++++.+..+.-+-
T Consensus 220 E~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~ 299 (385)
T KOG1034|consen 220 ELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILG 299 (385)
T ss_pred hhhcccCCCCccCcCCccccccccccccccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccceeeee
Confidence 111122111245578888888999999999888888886631 11223556665555555
Q ss_pred EEeecC-------------eEEEEEEc--CeEEEEeccc-ce--eeeeccccccCCCCCCCcEEEccCCcEEEEeccCC
Q 016020 320 IFLYEN-------------QLFLTFRN--RTVAVWNFRG-EL--VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAE 380 (396)
Q Consensus 320 iFly~~-------------qLFLTfs~--gti~iWd~~g-eL--~t~fedh~l~~~~c~~n~~~it~~qd~ii~~~~~~ 380 (396)
.|-|.+ |.+|+.-+ |+|-+||++. +- -|++--+..- -.--..=.|.|--+++.-|...
T Consensus 300 ~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~---~tVRQ~sfS~dgs~lv~vcdd~ 375 (385)
T KOG1034|consen 300 EFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSG---STVRQTSFSRDGSILVLVCDDG 375 (385)
T ss_pred EeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEecccc---ceeeeeeecccCcEEEEEeCCC
Confidence 555444 22333334 8999999988 32 2222221111 1111223466666777666543
No 177
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=95.47 E-value=0.071 Score=54.73 Aligned_cols=173 Identities=17% Similarity=0.209 Sum_probs=118.8
Q ss_pred CCcEEEeecCCCeEEEEeccCceEEEEeccCceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCcc
Q 016020 197 NGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKV 276 (396)
Q Consensus 197 NgkIlt~~a~d~~YrVwdlknYs~lysIs~~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~i 276 (396)
|+..+..|++++ -++|-+-|.|.. +| +-+-...+++..++ ..++|+|-.||+.+..|+..=+..+-|
T Consensus 10 n~~~~~~S~~~~------~~~~~Lk~~~q~-~~---~~~~e~~vav~lSn---gsv~lyd~~tg~~l~~fk~~~~~~N~v 76 (376)
T KOG1188|consen 10 NMVTASSSVRVS------NEDFCLKYDIQE-QV---KDGFETAVAVSLSN---GSVRLYDKGTGQLLEEFKGPPATTNGV 76 (376)
T ss_pred hhhhhccccccc------cccceeeccchh-hh---ccCcceeEEEEecC---CeEEEEeccchhhhheecCCCCcccce
Confidence 355666666654 355556665543 11 11111334444444 568999999999999999766777789
Q ss_pred chhhh-hcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecC---eE-----EEEEEcCeEEEEeccc--ce
Q 016020 277 DFIEQ-FNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYEN---QL-----FLTFRNRTVAVWNFRG--EL 345 (396)
Q Consensus 277 ~FiE~-~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~---qL-----FLTfs~gti~iWd~~g--eL 345 (396)
.|+-- ...-+++..-|+.++.||+|+..-.-+-.....+|.+|+=+.-| ++ =++=++-.+-+||.+. ++
T Consensus 77 rf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~ 156 (376)
T KOG1188|consen 77 RFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQL 156 (376)
T ss_pred EEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccch
Confidence 99875 56678899999999999999976655545555668888887643 33 3455667899999999 45
Q ss_pred ee-eeccccccCCC----CCCCcEEEccCCcEEEEeccCCCC
Q 016020 346 VT-SFEDHLLWHPD----CNTNNIYITSDQDLIISYCKAEPE 382 (396)
Q Consensus 346 ~t-~fedh~l~~~~----c~~n~~~it~~qd~ii~~~~~~~~ 382 (396)
++ -+|-|.=.+-- ..+.++-+|+.-|=+|+-..-..+
T Consensus 157 l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d 198 (376)
T KOG1188|consen 157 LRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD 198 (376)
T ss_pred hhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCC
Confidence 55 45555433211 678889999999988888766654
No 178
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=95.41 E-value=0.4 Score=51.76 Aligned_cols=135 Identities=19% Similarity=0.412 Sum_probs=93.7
Q ss_pred CceEEEEecc-CceEEEEEcCCe--EEEEEecCCCeeeeE--EEEeecCcEEEEEEeecccCCccchhhhhcceeeEeec
Q 016020 217 NYTMLYSISD-KHVQEIKISPGI--MLLIFNRSSSHVPLK--ILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQE 291 (396)
Q Consensus 217 nYs~lysIs~-~~VqEIkiSpg~--~Ll~~q~~~~~iplk--Il~IetG~~l~s~~~~L~~sk~i~FiE~~~ekLLIKQe 291 (396)
+-+..+.+.. --|++++|||.. +..++. .||.| |||+ .|.++.+|- -++-+.+-|.+ +|.+|++.-.
T Consensus 260 g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyG----fMPAkvtifnl-r~~~v~df~--egpRN~~~fnp-~g~ii~lAGF 331 (566)
T KOG2315|consen 260 GESVSVPLLKEGPVHDVTWSPSGREFAVVYG----FMPAKVTIFNL-RGKPVFDFP--EGPRNTAFFNP-HGNIILLAGF 331 (566)
T ss_pred CceEEEecCCCCCceEEEECCCCCEEEEEEe----cccceEEEEcC-CCCEeEeCC--CCCccceEECC-CCCEEEEeec
Confidence 4456666664 458999999888 666654 35554 4443 355555443 34445577777 9999999998
Q ss_pred CC---eeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEE-------cCeEEEEecccceee--eecc---ccccC
Q 016020 292 NE---NLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-------NRTVAVWNFRGELVT--SFED---HLLWH 356 (396)
Q Consensus 292 d~---~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs-------~gti~iWd~~geL~t--~fed---h~l~~ 356 (396)
|. .+-|||+.+.|++- .-.....+-|=+.++|+.|||.. |+.++||+..|.++- -|+. .+-|-
T Consensus 332 GNL~G~mEvwDv~n~K~i~--~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~~~~f~sEL~qv~W~ 409 (566)
T KOG2315|consen 332 GNLPGDMEVWDVPNRKLIA--KFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLHEKMFKSELLQVEWR 409 (566)
T ss_pred CCCCCceEEEeccchhhcc--ccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceeehhhhhHhHhheeee
Confidence 74 67799999977763 33444556778899999999976 478999999998654 7776 33344
Q ss_pred CCCCCC
Q 016020 357 PDCNTN 362 (396)
Q Consensus 357 ~~c~~n 362 (396)
| |+++
T Consensus 410 P-~~~~ 414 (566)
T KOG2315|consen 410 P-FNDK 414 (566)
T ss_pred e-cCCc
Confidence 3 5554
No 179
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.38 E-value=0.016 Score=65.76 Aligned_cols=153 Identities=11% Similarity=0.159 Sum_probs=113.5
Q ss_pred EEeeCCCCcEEEeecCCCeEEEEeccCceEEEEe----ccCceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEE
Q 016020 191 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI----SDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVF 266 (396)
Q Consensus 191 VEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysI----s~~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~ 266 (396)
+||..--|.+||+.+.||.+-||||.+-+.=|+. .-++|..+.|--.+.= ++..++......|||+-..+.+-.+
T Consensus 122 LDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqh-ILAS~s~sg~~~iWDlr~~~pii~l 200 (1049)
T KOG0307|consen 122 LDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSH-ILASGSPSGRAVIWDLRKKKPIIKL 200 (1049)
T ss_pred eeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhH-HhhccCCCCCceeccccCCCccccc
Confidence 6999988999999999999999999997755554 2377777777633322 2233444556666666554322200
Q ss_pred ----------------------------------------------EeecccCCc---cchhhhhcceeeEeecCCeeeE
Q 016020 267 ----------------------------------------------YHLLHRNKK---VDFIEQFNEKLLVKQENENLQI 297 (396)
Q Consensus 267 ----------------------------------------------~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I 297 (396)
+.+-+|++- ++.-.++.++||.--+|..+-+
T Consensus 201 s~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~ 280 (1049)
T KOG0307|consen 201 SDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIIC 280 (1049)
T ss_pred ccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeE
Confidence 011134333 6777788899999999999999
Q ss_pred EEcccceEEEecccccCCCceEEEeecCeEEEEEEc--CeEEEEecccc
Q 016020 298 LDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN--RTVAVWNFRGE 344 (396)
Q Consensus 298 ~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~--gti~iWd~~ge 344 (396)
||..|+|+.--.++..+|-.-..|.+.+---++.++ |.|.||.++|-
T Consensus 281 wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 281 WNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGT 329 (1049)
T ss_pred ecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecC
Confidence 999999999988889999999999998886556555 99999999994
No 180
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=95.38 E-value=0.8 Score=46.44 Aligned_cols=161 Identities=17% Similarity=0.203 Sum_probs=97.0
Q ss_pred CCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc-CceEEEEEcC-CeEEEEEecCCCeeeeEEEEeecCcEEEE
Q 016020 188 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-KHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKV 265 (396)
Q Consensus 188 PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~-~~VqEIkiSp-g~~Ll~~q~~~~~iplkIl~IetG~~l~s 265 (396)
|+-+-|.+ .||-+--...|+.+.|+|+.+.+.+-+|.- .+-..|.+|+ |-.+++.....+ -+.|+|.+|.+.++.
T Consensus 39 h~~~~~s~-Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~v~n~~~~--~v~v~D~~tle~v~~ 115 (369)
T PF02239_consen 39 HAGLKFSP-DGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSPDGKYVYVANYEPG--TVSVIDAETLEPVKT 115 (369)
T ss_dssp EEEEE-TT--SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--TTTEEEEEEEETT--EEEEEETTT--EEEE
T ss_pred eeEEEecC-CCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcCCCCEEEEEecCCC--ceeEeccccccceee
Confidence 44556666 677555556799999999999999999987 8899999995 566666654433 577899999999997
Q ss_pred EEee-cc---cCCc---cchhhhhcceeeEeecCCeeeEEEcccce-EEEecccccCCCceEEEeecCeEEEEEEc--Ce
Q 016020 266 FYHL-LH---RNKK---VDFIEQFNEKLLVKQENENLQILDVRNAE-LMEVSRTEFMTPSAFIFLYENQLFLTFRN--RT 335 (396)
Q Consensus 266 ~~~~-L~---~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~k-i~~v~~t~~~~PsAFiFly~~qLFLTfs~--gt 335 (396)
+.-. ++ +..+ |=....-.++++---|...+-+.|..+.+ +..........|.-+.|.+++++|++-.+ +.
T Consensus 116 I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~ 195 (369)
T PF02239_consen 116 IPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNK 195 (369)
T ss_dssp EE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTE
T ss_pred cccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccce
Confidence 6511 00 0111 21222222334333344556666765532 22122233456778889999998877544 89
Q ss_pred EEEEeccc-ceeeeecc
Q 016020 336 VAVWNFRG-ELVTSFED 351 (396)
Q Consensus 336 i~iWd~~g-eL~t~fed 351 (396)
|.++|... .++..++-
T Consensus 196 i~viD~~~~k~v~~i~~ 212 (369)
T PF02239_consen 196 IAVIDTKTGKLVALIDT 212 (369)
T ss_dssp EEEEETTTTEEEEEEE-
T ss_pred eEEEeeccceEEEEeec
Confidence 99999988 47776654
No 181
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=95.33 E-value=0.17 Score=55.50 Aligned_cols=148 Identities=11% Similarity=0.234 Sum_probs=113.2
Q ss_pred eEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEE
Q 016020 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFY 267 (396)
Q Consensus 190 fVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~ 267 (396)
|-==+..||-++++..-+++.||||-++-+.+-.|-+ +||..+.++++--=+++. .++..+++||+---.++.++.
T Consensus 175 YSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~--sSDgtIrlWdLgqQrCl~T~~ 252 (735)
T KOG0308|consen 175 YSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSA--SSDGTIRLWDLGQQRCLATYI 252 (735)
T ss_pred eeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeec--CCCceEEeeeccccceeeeEE
Confidence 4333556788999999999999999999999999999 999999999766544544 448999999999999999865
Q ss_pred eecccCCc---cchhhhhcceeeEeecCCeeeEEEccc-ceEEEecccccCCCceEEEee--cCeEEEEEEcCeEEEEec
Q 016020 268 HLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRN-AELMEVSRTEFMTPSAFIFLY--ENQLFLTFRNRTVAVWNF 341 (396)
Q Consensus 268 ~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~-~ki~~v~~t~~~~PsAFiFly--~~qLFLTfs~gti~iWd~ 341 (396)
.|..- ++ .+..=.+++.+-.+++|-.=|+++ .+++-+ =.-..|-.-+-+. +++..+|-.+++|+=|-.
T Consensus 253 ---vH~e~VWaL~-~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tli--ck~daPv~~l~~~~~~~~~WvtTtds~I~rW~~ 326 (735)
T KOG0308|consen 253 ---VHKEGVWALQ-SSPSFTHVYSGGRDGNIYRTDLRNPAKSTLI--CKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKL 326 (735)
T ss_pred ---eccCceEEEe-eCCCcceEEecCCCCcEEecccCCchhheEe--ecCCCchhhhhhccccCCceeeeccccceecCC
Confidence 33232 33 223556899999999999999999 554443 2223444445555 778899999999999998
Q ss_pred ccce
Q 016020 342 RGEL 345 (396)
Q Consensus 342 ~geL 345 (396)
.+..
T Consensus 327 ~~~~ 330 (735)
T KOG0308|consen 327 EPDI 330 (735)
T ss_pred cccc
Confidence 8864
No 182
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=95.29 E-value=0.071 Score=55.11 Aligned_cols=113 Identities=11% Similarity=0.256 Sum_probs=82.9
Q ss_pred EEeeCCCCcEEEeecCCCeEEEEecc------CceEEEEecc------------CceEEEEEcCCeEEEEEecCCCeeee
Q 016020 191 VEFDDVNGKVLTYSAQDSIYKVFDLK------NYTMLYSISD------------KHVQEIKISPGIMLLIFNRSSSHVPL 252 (396)
Q Consensus 191 VEFDd~NgkIlt~~a~d~~YrVwdlk------nYs~lysIs~------------~~VqEIkiSpg~~Ll~~q~~~~~ipl 252 (396)
-||-+..--+..||+..|++|+=||+ ..+.|++-+. --|.+||+|++=-.|+ . ..++++
T Consensus 219 aEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryil-s--RDyltv 295 (433)
T KOG1354|consen 219 AEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYIL-S--RDYLTV 295 (433)
T ss_pred hccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEE-E--ecccee
Confidence 47888888999999999999999999 5667776554 2468999997644332 2 348999
Q ss_pred EEEEe-ecCcEEEEEEe-eccc--------------CCccchhhhhcceeeEeecCCeeeEEEcccceEEE
Q 016020 253 KILSI-EDGTVLKVFYH-LLHR--------------NKKVDFIEQFNEKLLVKQENENLQILDVRNAELME 307 (396)
Q Consensus 253 kIl~I-etG~~l~s~~~-~L~~--------------sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~ 307 (396)
||||+ ++.+++..... ---+ ..++.+.- .+.+++.+.-+..++++|+..|...-
T Consensus 296 k~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg-~~~~v~TGsy~n~frvf~~~~gsk~d 365 (433)
T KOG1354|consen 296 KLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSG-NDSYVMTGSYNNVFRVFNLARGSKED 365 (433)
T ss_pred EEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcC-CcceEecccccceEEEecCCCCccee
Confidence 99999 88888876541 0001 12255554 56699999999999999977765443
No 183
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=95.27 E-value=0.47 Score=48.56 Aligned_cols=154 Identities=20% Similarity=0.322 Sum_probs=100.8
Q ss_pred cccceEEEeeccchhhhhhccccceeeecc-ccceEEEecC-C-CCceEEEEeeecCCCeEEEEEeEecCCCceeeeEee
Q 016020 87 KRTKVIEIVAARDIVFALAHSGVCAAFSRE-TNRRICFLNV-S-PDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRST 163 (396)
Q Consensus 87 ~RS~V~EIv~a~dii~~L~~sG~c~af~~~-t~~~ic~lN~-s-~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~ 163 (396)
-+++|+.|-..+|-|++++.+-+ -+|.=- +=+.+|.+-. + |.- .=++-.. -|.+++. |-+.||-.+
T Consensus 93 f~~~I~~V~l~r~riVvvl~~~I-~VytF~~n~k~l~~~et~~NPkG-lC~~~~~-~~k~~La--------fPg~k~Gqv 161 (346)
T KOG2111|consen 93 FNSEIKAVKLRRDRIVVVLENKI-YVYTFPDNPKLLHVIETRSNPKG-LCSLCPT-SNKSLLA--------FPGFKTGQV 161 (346)
T ss_pred eccceeeEEEcCCeEEEEecCeE-EEEEcCCChhheeeeecccCCCc-eEeecCC-CCceEEE--------cCCCccceE
Confidence 47899999999888888777644 444322 2233332211 1 111 1222222 2344444 567888888
Q ss_pred ehhhhhhCCCCCCCcc------eeecccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc----CceEEEE
Q 016020 164 KIEYIRRGKPDSGFAL------FESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD----KHVQEIK 233 (396)
Q Consensus 164 ~~~~i~~gk~~~~~~L------F~~~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~----~~VqEIk 233 (396)
-+.+|..-++++.... -....|..+| -++.|+|...-.+|+||-.+.+.|+++-- -++.+|.
T Consensus 162 Qi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~G--------t~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~ia 233 (346)
T KOG2111|consen 162 QIVDLASTKPNAPSIINAHDSDIACVALNLQG--------TLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIA 233 (346)
T ss_pred EEEEhhhcCcCCceEEEcccCceeEEEEcCCc--------cEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEE
Confidence 8888877666522211 1124555554 24555555566799999999999999965 8999999
Q ss_pred EcCCeEEEEEecCCCeeeeEEEEeecCc
Q 016020 234 ISPGIMLLIFNRSSSHVPLKILSIEDGT 261 (396)
Q Consensus 234 iSpg~~Ll~~q~~~~~iplkIl~IetG~ 261 (396)
+||+..+|.-.+. ...++||++++-+
T Consensus 234 FSp~~s~LavsSd--KgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 234 FSPNSSWLAVSSD--KGTLHIFSLRDTE 259 (346)
T ss_pred eCCCccEEEEEcC--CCeEEEEEeecCC
Confidence 9999988888887 5778999999854
No 184
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=95.25 E-value=1.7 Score=43.37 Aligned_cols=206 Identities=16% Similarity=0.222 Sum_probs=130.9
Q ss_pred ccceeeeccccceEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcceeecccCC
Q 016020 108 GVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKW 187 (396)
Q Consensus 108 G~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF~~~~l~~ 187 (396)
=.|.||++- |++|.. .|+|.-|+-+=+|- ++ |.++- . .-...|-...++.
T Consensus 92 iyc~~ws~~-geliat--gsndk~ik~l~fn~--dt----------------~~~~g-------~--dle~nmhdgtird 141 (350)
T KOG0641|consen 92 IYCTAWSPC-GELIAT--GSNDKTIKVLPFNA--DT----------------CNATG-------H--DLEFNMHDGTIRD 141 (350)
T ss_pred EEEEEecCc-cCeEEe--cCCCceEEEEeccc--cc----------------ccccC-------c--ceeeeecCCceee
Confidence 378999865 777654 56666666555553 21 22220 0 0012455667777
Q ss_pred CCeEEeeCCCCcEEEeecC-CCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEE
Q 016020 188 PGFVEFDDVNGKVLTYSAQ-DSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLK 264 (396)
Q Consensus 188 PgfVEFDd~NgkIlt~~a~-d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~ 264 (396)
-.|.|=-+.-|+||++-.. |-.+-+=|-....-+--+|+ -+|..+--=+|.|+. +-..+..++.||+.---...
T Consensus 142 l~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilalyswn~~m~~---sgsqdktirfwdlrv~~~v~ 218 (350)
T KOG0641|consen 142 LAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALYSWNGAMFA---SGSQDKTIRFWDLRVNSCVN 218 (350)
T ss_pred eEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEEEecCcEEE---ccCCCceEEEEeeeccceee
Confidence 7888877777778776544 33344445555554444444 333333322444431 22235778888876543333
Q ss_pred EEEeecccCC-------ccchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc-CeE
Q 016020 265 VFYHLLHRNK-------KVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTV 336 (396)
Q Consensus 265 s~~~~L~~sk-------~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti 336 (396)
.+.-..|-+. .|. ....|-.|..+|+|++--+||++-+..+.---+|....++..|+|.--.+||-|. .+|
T Consensus 219 ~l~~~~~~~glessavaav~-vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~i 297 (350)
T KOG0641|consen 219 TLDNDFHDGGLESSAVAAVA-VDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKI 297 (350)
T ss_pred eccCcccCCCcccceeEEEE-ECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceE
Confidence 3221111111 122 3347889999999999999999999988877788889999999999999999999 799
Q ss_pred EEEecccceee
Q 016020 337 AVWNFRGELVT 347 (396)
Q Consensus 337 ~iWd~~geL~t 347 (396)
++=|++|+|.-
T Consensus 298 kltdlqgdla~ 308 (350)
T KOG0641|consen 298 KLTDLQGDLAH 308 (350)
T ss_pred EEeecccchhh
Confidence 99999998654
No 185
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=95.16 E-value=0.61 Score=47.80 Aligned_cols=149 Identities=13% Similarity=0.237 Sum_probs=95.0
Q ss_pred cEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeE-EEEEecCCCeeeeEEEEeecC-cEEEEEEeecccCC
Q 016020 199 KVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIM-LLIFNRSSSHVPLKILSIEDG-TVLKVFYHLLHRNK 274 (396)
Q Consensus 199 kIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~-Ll~~q~~~~~iplkIl~IetG-~~l~s~~~~L~~sk 274 (396)
-.+|..--+..+|+-||+.+++--.+++ ++|..|.|||..= +|...++ +..+++|||--- .++..+. +|.+|
T Consensus 159 cLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsa--Dg~irlWDiRrasgcf~~lD--~hn~k 234 (397)
T KOG4283|consen 159 CLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSA--DGAIRLWDIRRASGCFRVLD--QHNTK 234 (397)
T ss_pred eEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCC--CceEEEEEeecccceeEEee--cccCc
Confidence 3456566688999999999999999999 9999999998764 4455555 677888888653 3333333 33334
Q ss_pred c----------------cchhhhhcceeeEeecCCeeeEEEcccceEEEe-----cccccCCCceEEEeecCeEEEEEEc
Q 016020 275 K----------------VDFIEQFNEKLLVKQENENLQILDVRNAELMEV-----SRTEFMTPSAFIFLYENQLFLTFRN 333 (396)
Q Consensus 275 ~----------------i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v-----~~t~~~~PsAFiFly~~qLFLTfs~ 333 (396)
+ +.|-- ++.+|+.+--|..++.|+..+|+-... .+...-.|.--+=.-+...|+-|.+
T Consensus 235 ~~p~~~~n~ah~gkvngla~tS-d~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~ 313 (397)
T KOG4283|consen 235 RPPILKTNTAHYGKVNGLAWTS-DARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPN 313 (397)
T ss_pred cCccccccccccceeeeeeecc-cchhhhhccCccceEEeecccCcccccccccccccccccceEEEeecccceEEEEec
Confidence 3 34444 788999999999999999998764432 1111111111111223444555554
Q ss_pred -CeEEEEeccc-ceeeeeccc
Q 016020 334 -RTVAVWNFRG-ELVTSFEDH 352 (396)
Q Consensus 334 -gti~iWd~~g-eL~t~fedh 352 (396)
+++.++++-. +.++.+..|
T Consensus 314 ~~~lall~~~sgs~ir~l~~h 334 (397)
T KOG4283|consen 314 DGSLALLNLLEGSFVRRLSTH 334 (397)
T ss_pred CCeEEEEEccCceEEEeeecc
Confidence 4555555433 555555555
No 186
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=95.15 E-value=3.9 Score=40.76 Aligned_cols=266 Identities=14% Similarity=0.142 Sum_probs=145.4
Q ss_pred eeccchhhhhhccccceeeeccccceEEEecCCCCceE----------EEEeeecCCCeEEEEEeEecCCCceeeeEeee
Q 016020 95 VAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVI----------RSLFYNKNNDSLITVSVYASDNFSSLKCRSTK 164 (396)
Q Consensus 95 v~a~dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evI----------rsifyN~~n~slI~vSv~~sd~~s~L~cr~~~ 164 (396)
+.+.+.|++...+|.-.|||..||+.+--.+.....-+ -++-+ .++.+++.+ .+ ..|.|--.
T Consensus 66 vv~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~----~~-g~l~ald~- 137 (394)
T PRK11138 66 AVAYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGS----EK-GQVYALNA- 137 (394)
T ss_pred EEECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEc----CC-CEEEEEEC-
Confidence 34688999999999999999999999987766542111 01111 123344321 11 23444322
Q ss_pred hhhhhhCCCCCCCcceeecccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEeccCc--e-----EEEEEcCC
Q 016020 165 IEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKH--V-----QEIKISPG 237 (396)
Q Consensus 165 ~~~i~~gk~~~~~~LF~~~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~~~--V-----qEIkiSpg 237 (396)
.-||+-=.+++ .......|-.. +|+++. ...++.+.-+|.+|.+.+.+..... + ..-.+.+|
T Consensus 138 ----~tG~~~W~~~~-~~~~~ssP~v~-----~~~v~v-~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~ 206 (394)
T PRK11138 138 ----EDGEVAWQTKV-AGEALSRPVVS-----DGLVLV-HTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFG 206 (394)
T ss_pred ----CCCCCcccccC-CCceecCCEEE-----CCEEEE-ECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECC
Confidence 22332111111 11122233221 245544 3456777888888888888776421 0 11122334
Q ss_pred eEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccC-------Cccchhh-hhcceeeEeecCCeeeEEEcccceEEEec
Q 016020 238 IMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRN-------KKVDFIE-QFNEKLLVKQENENLQILDVRNAELMEVS 309 (396)
Q Consensus 238 ~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~s-------k~i~FiE-~~~ekLLIKQed~~L~I~Dv~~~ki~~v~ 309 (396)
.+++ .. . .-.+.-++++||+.+-.+..--+.. ..+.-.+ ..++.+++...++.|..+|+.+++.+=..
T Consensus 207 ~v~~-~~-~--~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~ 282 (394)
T PRK11138 207 GAIV-GG-D--NGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKR 282 (394)
T ss_pred EEEE-Ec-C--CCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEee
Confidence 4332 22 2 2346678899999877654211110 0011111 24788888888999999999999865432
Q ss_pred ccccCCCceEEEeecCeEEEEEEcCeEEEEeccc-ceeeeec---cccccCCCCCCCcEEEccCCcEEEEeccCCCCCcc
Q 016020 310 RTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRG-ELVTSFE---DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQW 385 (396)
Q Consensus 310 ~t~~~~PsAFiFly~~qLFLTfs~gti~iWd~~g-eL~t~fe---dh~l~~~~c~~n~~~it~~qd~ii~~~~~~~~~~~ 385 (396)
+.. .+.. .-..++.+|+.-.+|.+-..|... +.+=+.+ +...-.|-..++.+|+......+...=..++.--|
T Consensus 283 ~~~--~~~~-~~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~~g~l~v~~~~G~l~~ld~~tG~~~~ 359 (394)
T PRK11138 283 EYG--SVND-FAVDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLYNGYLVVGDSEGYLHWINREDGRFVA 359 (394)
T ss_pred cCC--CccC-cEEECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 211 1222 235678889888889888888854 5433222 22223344568889988777666655344444444
Q ss_pred c
Q 016020 386 M 386 (396)
Q Consensus 386 ~ 386 (396)
.
T Consensus 360 ~ 360 (394)
T PRK11138 360 Q 360 (394)
T ss_pred E
Confidence 3
No 187
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=95.13 E-value=0.051 Score=56.30 Aligned_cols=149 Identities=15% Similarity=0.257 Sum_probs=108.4
Q ss_pred CeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc-CceEEEEEcCCeEEEEEecCCCeeeeEEEEeec-CcEEEEE
Q 016020 189 GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-KHVQEIKISPGIMLLIFNRSSSHVPLKILSIED-GTVLKVF 266 (396)
Q Consensus 189 gfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~-~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~Iet-G~~l~s~ 266 (396)
--+.|.++---||+.++.|..+-++||+.-+.|.++.- -.---|-|+|..+.++...- +--|-.+|+-. .++++..
T Consensus 191 ~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~E--D~nlY~~DmR~l~~p~~v~ 268 (433)
T KOG0268|consen 191 SSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANE--DHNLYTYDMRNLSRPLNVH 268 (433)
T ss_pred eEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCccccceeeccc--cccceehhhhhhcccchhh
Confidence 56899999999999999999999999999998887763 33334667786665444333 44444444433 1222221
Q ss_pred EeecccC---CccchhhhhcceeeEeecCCeeeEEEcccceEEEecccccC-CCceEEEeecCeEEEEEEc-CeEEEEec
Q 016020 267 YHLLHRN---KKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFM-TPSAFIFLYENQLFLTFRN-RTVAVWNF 341 (396)
Q Consensus 267 ~~~L~~s---k~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~-~PsAFiFly~~qLFLTfs~-gti~iWd~ 341 (396)
. .|. -+|+|.+ .|.-++.+.-|.+|+||.+..+.-+.|=-|.-| .+-+.-++-|++..++=|| +.|.+|-.
T Consensus 269 ~---dhvsAV~dVdfsp-tG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka 344 (433)
T KOG0268|consen 269 K---DHVSAVMDVDFSP-TGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKA 344 (433)
T ss_pred c---ccceeEEEeccCC-CcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeec
Confidence 1 121 2389999 999999999999999999988665554444434 3567778999999999999 99999987
Q ss_pred cc
Q 016020 342 RG 343 (396)
Q Consensus 342 ~g 343 (396)
..
T Consensus 345 ~A 346 (433)
T KOG0268|consen 345 KA 346 (433)
T ss_pred ch
Confidence 76
No 188
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=95.10 E-value=0.086 Score=55.03 Aligned_cols=111 Identities=11% Similarity=0.254 Sum_probs=85.8
Q ss_pred EEeeCCCCcEEEeecCCCeEEEEecc--------C--------ceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeee
Q 016020 191 VEFDDVNGKVLTYSAQDSIYKVFDLK--------N--------YTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPL 252 (396)
Q Consensus 191 VEFDd~NgkIlt~~a~d~~YrVwdlk--------n--------Ys~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~ipl 252 (396)
|-|++ +|.+||+.+.++.+.+|=.. + |.-...+.. +++-|+.|+|+.+++++..- +..+
T Consensus 71 vRf~p-~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~--dns~ 147 (434)
T KOG1009|consen 71 VRFSP-DGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSV--DNSV 147 (434)
T ss_pred EEEcC-CcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeec--cceE
Confidence 66888 99999999999999999887 2 443334442 99999999999999999988 7788
Q ss_pred EEEEeecCcEEEEEEeecccCCccch--hhhhcceeeEeecCCeeeEEEcccceEEE
Q 016020 253 KILSIEDGTVLKVFYHLLHRNKKVDF--IEQFNEKLLVKQENENLQILDVRNAELME 307 (396)
Q Consensus 253 kIl~IetG~~l~s~~~~L~~sk~i~F--iE~~~ekLLIKQed~~L~I~Dv~~~ki~~ 307 (396)
.+||++.|..+.-+. .|...+|= ....+.|+..+.-|...+++++...+.++
T Consensus 148 ~l~Dv~~G~l~~~~~---dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~ 201 (434)
T KOG1009|consen 148 RLWDVHAGQLLAILD---DHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIK 201 (434)
T ss_pred EEEEeccceeEeecc---ccccccceeecchhhhhhhhhccCcccceeeeeeeeeee
Confidence 999999999999776 55555332 23477888888888777777776655444
No 189
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=94.97 E-value=0.011 Score=66.13 Aligned_cols=113 Identities=16% Similarity=0.234 Sum_probs=88.6
Q ss_pred eeeeEEEEeecCcEEEEEEeecccCCccchhhhhcceeeEee--cCCeeeEEEcccceEEEecccccCCCceEEEeecCe
Q 016020 249 HVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ--ENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQ 326 (396)
Q Consensus 249 ~iplkIl~IetG~~l~s~~~~L~~sk~i~FiE~~~ekLLIKQ--ed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~q 326 (396)
+.-+|||+-||+.++.+.. +|+.++-=+.|-.+.++|.. .|.-||+|=+.++..+-|+++|.-...|.-|.|-.
T Consensus 211 d~lvKiwS~et~~~lAs~r---Ghs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~- 286 (1113)
T KOG0644|consen 211 DRLVKIWSMETARCLASCR---GHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA- 286 (1113)
T ss_pred cceeeeeeccchhhhccCC---CCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccc-
Confidence 5778999999999999998 88888888888888888765 77889999999999999999999888888888866
Q ss_pred EEEEEEc-CeEEEEecccc-eeee----------eccccccCCCCCCCcEEEccCCc
Q 016020 327 LFLTFRN-RTVAVWNFRGE-LVTS----------FEDHLLWHPDCNTNNIYITSDQD 371 (396)
Q Consensus 327 LFLTfs~-gti~iWd~~ge-L~t~----------fedh~l~~~~c~~n~~~it~~qd 371 (396)
+-++ ||+++||.+-+ +++. +++.++ .|++..-|.|...|
T Consensus 287 ---sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~---~~~~~~~f~Tgs~d 337 (1113)
T KOG0644|consen 287 ---SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSIL---FENNGDRFLTGSRD 337 (1113)
T ss_pred ---cCCCCCceEeccccccccccCCCCCCcccccceeeee---ccccccccccccCC
Confidence 4444 99999999943 3222 333333 26666666665544
No 190
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=94.76 E-value=0.34 Score=52.26 Aligned_cols=213 Identities=14% Similarity=0.170 Sum_probs=131.3
Q ss_pred cCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhh-hhCCCCCCCcceeecccCCCCeEEeeCCCCcEEEe
Q 016020 125 NVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYI-RRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTY 203 (396)
Q Consensus 125 N~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i-~~gk~~~~~~LF~~~~l~~PgfVEFDd~NgkIlt~ 203 (396)
|++|. +-|+=.|++|. |.+.|. +.|.--.++|+--+...+ +-|| ..|..-|+---.+ ...-+.+
T Consensus 32 t~~pg--~~s~~w~~~n~-lvvas~-~gdk~~~~~~K~g~~~~Vp~~~k-~~gd~~~Cv~~~s----------~S~y~~s 96 (673)
T KOG4378|consen 32 TAEPG--DFSFNWQRRNF-LVVASM-AGDKVMRIKEKDGKTPEVPRVRK-LTGDNAFCVACAS----------QSLYEIS 96 (673)
T ss_pred CCCCc--ceeeeccccce-EEEeec-CCceeEEEecccCCCCccceeec-cccchHHHHhhhh----------cceeeec
Confidence 34444 77888898887 666553 445555666654432222 1122 1222222211111 1144566
Q ss_pred ecCCCeEEEEeccCce--------------EEEEeccCceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEee
Q 016020 204 SAQDSIYKVFDLKNYT--------------MLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHL 269 (396)
Q Consensus 204 ~a~d~~YrVwdlknYs--------------~lysIs~~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~ 269 (396)
..+.+|+++|||+--- ..|--.|+.+..+..+.++.+ .++-||...-+|.+.
T Consensus 97 gG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiii--------------h~~~t~~~tt~f~~~ 162 (673)
T KOG4378|consen 97 GGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIII--------------HGTKTKQKTTTFTID 162 (673)
T ss_pred cCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEE--------------EecccCccccceecC
Confidence 7889999999997321 457777788888888887775 334444444444421
Q ss_pred cccCC-ccchhhhhcceeeEeecCCeeeEEEccc-ceEEEecccccCCCceEEEeecCeE-EEEEEc-CeEEEEecccc-
Q 016020 270 LHRNK-KVDFIEQFNEKLLVKQENENLQILDVRN-AELMEVSRTEFMTPSAFIFLYENQL-FLTFRN-RTVAVWNFRGE- 344 (396)
Q Consensus 270 L~~sk-~i~FiE~~~ekLLIKQed~~L~I~Dv~~-~ki~~v~~t~~~~PsAFiFly~~qL-FLTfs~-gti~iWd~~ge- 344 (396)
-.++- -++|..--...|-+..+++.+-+||+-. +.+..-+..|..+-+..-|.+-+++ |+++-. -.|-+||.+++
T Consensus 163 sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~ 242 (673)
T KOG4378|consen 163 SGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQA 242 (673)
T ss_pred CCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccccc
Confidence 11111 1455554455677888999999999987 6677789999999999999998876 667766 69999999985
Q ss_pred eeee-eccccccCCC-CCCCcEEE
Q 016020 345 LVTS-FEDHLLWHPD-CNTNNIYI 366 (396)
Q Consensus 345 L~t~-fedh~l~~~~-c~~n~~~i 366 (396)
++-. --+|-+.+.. -+++.+..
T Consensus 243 s~~~l~y~~Plstvaf~~~G~~L~ 266 (673)
T KOG4378|consen 243 STDRLTYSHPLSTVAFSECGTYLC 266 (673)
T ss_pred ccceeeecCCcceeeecCCceEEE
Confidence 3322 2344444333 44444443
No 191
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=94.73 E-value=0.095 Score=34.97 Aligned_cols=38 Identities=11% Similarity=0.231 Sum_probs=34.8
Q ss_pred ceEEEecccccCCCceEEEeecCeEEEEEEc-CeEEEEe
Q 016020 303 AELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWN 340 (396)
Q Consensus 303 ~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd 340 (396)
++++.+.++|.....+.-|.+++++++|-+. ++|.+||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 4678888899999999999999999999998 9999997
No 192
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=94.59 E-value=3.5 Score=42.31 Aligned_cols=79 Identities=14% Similarity=0.156 Sum_probs=62.0
Q ss_pred CCCeEEeeCCCCcEEEeec---------CCCeEEEEeccCceEEEEecc---------CceEEEEEcCC-eEEEEEecCC
Q 016020 187 WPGFVEFDDVNGKVLTYSA---------QDSIYKVFDLKNYTMLYSISD---------KHVQEIKISPG-IMLLIFNRSS 247 (396)
Q Consensus 187 ~PgfVEFDd~NgkIlt~~a---------~d~~YrVwdlknYs~lysIs~---------~~VqEIkiSpg-~~Ll~~q~~~ 247 (396)
+|..+ +.+-+..+-.+++ -+..+.|||.++.+.+-+|.- ..-..+.+||+ -.|++.+..
T Consensus 48 ~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~- 125 (352)
T TIGR02658 48 LPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFS- 125 (352)
T ss_pred CCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCC-
Confidence 57776 8887777878888 799999999999999988883 33448889955 677777643
Q ss_pred CeeeeEEEEeecCcEEEEEE
Q 016020 248 SHVPLKILSIEDGTVLKVFY 267 (396)
Q Consensus 248 ~~iplkIl~IetG~~l~s~~ 267 (396)
..-.+.+.|+++++.+....
T Consensus 126 p~~~V~VvD~~~~kvv~ei~ 145 (352)
T TIGR02658 126 PSPAVGVVDLEGKAFVRMMD 145 (352)
T ss_pred CCCEEEEEECCCCcEEEEEe
Confidence 13456899999999999876
No 193
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=94.48 E-value=1.4 Score=48.74 Aligned_cols=136 Identities=9% Similarity=0.065 Sum_probs=91.6
Q ss_pred EEeecCCCeEEEEeccCce-EEEEecc---CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCc-
Q 016020 201 LTYSAQDSIYKVFDLKNYT-MLYSISD---KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKK- 275 (396)
Q Consensus 201 lt~~a~d~~YrVwdlknYs-~lysIs~---~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~- 275 (396)
||-+-.++.+-+|++.+-= +.-.|.+ -.|..+.|++|--|+=... ...+.=||++||+.++... .-...
T Consensus 40 lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~---sg~i~EwDl~~lk~~~~~d---~~gg~I 113 (691)
T KOG2048|consen 40 LAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGL---SGSITEWDLHTLKQKYNID---SNGGAI 113 (691)
T ss_pred eeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecC---CceEEEEecccCceeEEec---CCCcce
Confidence 5555668889999998743 4445554 7789999998887743333 4778889999999999655 22222
Q ss_pred --cchhhhhcceeeEeecCCeeeEEEcccceEEE--ecccccCCCceEEEeecCe-EEEEEEcCeEEEEeccc
Q 016020 276 --VDFIEQFNEKLLVKQENENLQILDVRNAELME--VSRTEFMTPSAFIFLYENQ-LFLTFRNRTVAVWNFRG 343 (396)
Q Consensus 276 --i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~--v~~t~~~~PsAFiFly~~q-LFLTfs~gti~iWd~~g 343 (396)
|+- -.-+..|+|+-||+-|.++++..++|+- .+.-+.--.=..-|.+++. ++---+||.|.+||...
T Consensus 114 Wsiai-~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~ 185 (691)
T KOG2048|consen 114 WSIAI-NPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKS 185 (691)
T ss_pred eEEEe-CCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCC
Confidence 332 2256899999999999999999999875 2222211111223344554 33444557899999987
No 194
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=94.46 E-value=1 Score=45.98 Aligned_cols=154 Identities=14% Similarity=0.231 Sum_probs=102.0
Q ss_pred EeeCCCCcEEEeecCCCeEEEEeccCc-----eEEEEeccCceEEEEEcCC-eEEEEEecCCCeeeeEEEEeec---CcE
Q 016020 192 EFDDVNGKVLTYSAQDSIYKVFDLKNY-----TMLYSISDKHVQEIKISPG-IMLLIFNRSSSHVPLKILSIED---GTV 262 (396)
Q Consensus 192 EFDd~NgkIlt~~a~d~~YrVwdlknY-----s~lysIs~~~VqEIkiSpg-~~Ll~~q~~~~~iplkIl~Iet---G~~ 262 (396)
+.+++--+-+..|+-|-+-.|||++.. +-.----|++|-+|+|+.| ..++.+-++ +..+++||+-. .+.
T Consensus 157 DWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvga--DGSvRmFDLR~leHSTI 234 (364)
T KOG0290|consen 157 DWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGA--DGSVRMFDLRSLEHSTI 234 (364)
T ss_pred ccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecC--CCcEEEEEecccccceE
Confidence 333444455556778999999999997 2222234599999999964 454455455 88899999866 444
Q ss_pred EEEEE------eecccCCc-cchhhhhcceeeEeecCCeeeEEEccc-ceEEEecccccCCCceEEEeecCeE-EEEEEc
Q 016020 263 LKVFY------HLLHRNKK-VDFIEQFNEKLLVKQENENLQILDVRN-AELMEVSRTEFMTPSAFIFLYENQL-FLTFRN 333 (396)
Q Consensus 263 l~s~~------~~L~~sk~-i~FiE~~~ekLLIKQed~~L~I~Dv~~-~ki~~v~~t~~~~PsAFiFly~~qL-FLTfs~ 333 (396)
+++=- ++|.-++. +.||. .+.++..-++|+||+. ...+.-++.|...+-+.-.-|.+.- ..|.-+
T Consensus 235 IYE~p~~~~pLlRLswnkqDpnymA------Tf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGD 308 (364)
T KOG0290|consen 235 IYEDPSPSTPLLRLSWNKQDPNYMA------TFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGD 308 (364)
T ss_pred EecCCCCCCcceeeccCcCCchHHh------hhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCC
Confidence 44211 22333332 55555 3456778899999998 4555678899888888888887654 566666
Q ss_pred -CeEEEEecccceeeeecccc
Q 016020 334 -RTVAVWNFRGELVTSFEDHL 353 (396)
Q Consensus 334 -gti~iWd~~geL~t~fedh~ 353 (396)
-.+.|||++.----..||-+
T Consensus 309 D~qaliWDl~q~~~~~~~dPi 329 (364)
T KOG0290|consen 309 DCQALIWDLQQMPRENGEDPI 329 (364)
T ss_pred cceEEEEecccccccCCCCch
Confidence 57899999874333444433
No 195
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=94.15 E-value=0.12 Score=54.96 Aligned_cols=157 Identities=17% Similarity=0.260 Sum_probs=121.1
Q ss_pred CCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc-CceEEEE---------------------------------
Q 016020 188 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-KHVQEIK--------------------------------- 233 (396)
Q Consensus 188 PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~-~~VqEIk--------------------------------- 233 (396)
|=.++|-. ||+-+....-.|+.--||+.+.+++++|.- |.|.|++
T Consensus 132 PY~~~ytr-nGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtElHClk~~~ 210 (545)
T KOG1272|consen 132 PYHLDYTR-NGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTELHCLKRHI 210 (545)
T ss_pred CeeeeecC-CccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecCCCcEEeehhhcC
Confidence 45577777 999999999999999999999998888875 4444443
Q ss_pred ------EcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCccchhhh--hcceeeEeecCCeeeEEEcccceE
Q 016020 234 ------ISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQ--FNEKLLVKQENENLQILDVRNAEL 305 (396)
Q Consensus 234 ------iSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~i~FiE~--~~ekLLIKQed~~L~I~Dv~~~ki 305 (396)
+=|-++||+.... ...|+-.||.+|+...+++ ....+++-|+| .|.-|=++--++.+..|.-.+.+-
T Consensus 211 ~v~rLeFLPyHfLL~~~~~--~G~L~Y~DVS~GklVa~~~---t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skeP 285 (545)
T KOG1272|consen 211 RVARLEFLPYHFLLVAASE--AGFLKYQDVSTGKLVASIR---TGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEP 285 (545)
T ss_pred chhhhcccchhheeeeccc--CCceEEEeechhhhhHHHH---ccCCccchhhcCCccceEEEcCCCceEEecCCCCcch
Confidence 3366677666555 6789999999999999988 55555555553 566677788899999999888765
Q ss_pred EEecccccCCCceEEEeecCeEEEEEEc-CeEEEEeccc--ceeeeec
Q 016020 306 MEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNFRG--ELVTSFE 350 (396)
Q Consensus 306 ~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~~g--eL~t~fe 350 (396)
+-=.-+|--+.++.-+-++++++.|--- +.++|||++. +|-|-.-
T Consensus 286 LvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t 333 (545)
T KOG1272|consen 286 LVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT 333 (545)
T ss_pred HHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec
Confidence 4433477788899999999999998865 9999999999 5655433
No 196
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=94.14 E-value=0.83 Score=49.38 Aligned_cols=170 Identities=15% Similarity=0.170 Sum_probs=114.7
Q ss_pred CeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc---CceEEEEEcCCeE-EEEEecCCCeeeeEEEEeecCcEEE
Q 016020 189 GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD---KHVQEIKISPGIM-LLIFNRSSSHVPLKILSIEDGTVLK 264 (396)
Q Consensus 189 gfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~---~~VqEIkiSpg~~-Ll~~q~~~~~iplkIl~IetG~~l~ 264 (396)
-+|.|.. |..-||+-+..|.+.|-.+++...--.+.+ +-|-=++.||..- ||...+. ..-+.+||++--.+.+
T Consensus 125 t~v~YN~-~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd--~G~VtlwDv~g~sp~~ 201 (673)
T KOG4378|consen 125 TYVDYNN-TDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASD--KGAVTLWDVQGMSPIF 201 (673)
T ss_pred EEEEecC-CcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeecc--CCeEEEEeccCCCccc
Confidence 3788877 788999999999999999999875444433 4555667776553 3333333 5778999999877777
Q ss_pred EEEe-ecccCCccchhhhhcceeeEee-cCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc--CeEEEEe
Q 016020 265 VFYH-LLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN--RTVAVWN 340 (396)
Q Consensus 265 s~~~-~L~~sk~i~FiE~~~ekLLIKQ-ed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~--gti~iWd 340 (396)
.+-- --++...|+|.+ .||+|++-- =|..|.|||+++++....+ +..-+-++.-|.++ ..+|..-+ |.+-.||
T Consensus 202 ~~~~~HsAP~~gicfsp-sne~l~vsVG~Dkki~~yD~~s~~s~~~l-~y~~Plstvaf~~~-G~~L~aG~s~G~~i~YD 278 (673)
T KOG4378|consen 202 HASEAHSAPCRGICFSP-SNEALLVSVGYDKKINIYDIRSQASTDRL-TYSHPLSTVAFSEC-GTYLCAGNSKGELIAYD 278 (673)
T ss_pred chhhhccCCcCcceecC-CccceEEEecccceEEEeeccccccccee-eecCCcceeeecCC-ceEEEeecCCceEEEEe
Confidence 6441 113344499999 788887765 7999999999998877643 22233344445554 45555433 9999999
Q ss_pred ccc--ceeeeeccccccCCCCCCCcEEEcc
Q 016020 341 FRG--ELVTSFEDHLLWHPDCNTNNIYITS 368 (396)
Q Consensus 341 ~~g--eL~t~fedh~l~~~~c~~n~~~it~ 368 (396)
.++ +.|+...-| .+.++--.|.++
T Consensus 279 ~R~~k~Pv~v~sah----~~sVt~vafq~s 304 (673)
T KOG4378|consen 279 MRSTKAPVAVRSAH----DASVTRVAFQPS 304 (673)
T ss_pred cccCCCCceEeeec----ccceeEEEeeec
Confidence 999 466655443 233444445444
No 197
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.08 E-value=1.9 Score=44.36 Aligned_cols=243 Identities=17% Similarity=0.280 Sum_probs=150.8
Q ss_pred CCCCceEEEEeeecCCCeEEEEE------eEec-CCCceeeeEeeehhhhhhCCCCCCCcceeecccCCCCeEEeeCCCC
Q 016020 126 VSPDEVIRSLFYNKNNDSLITVS------VYAS-DNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNG 198 (396)
Q Consensus 126 ~s~~evIrsifyN~~n~slI~vS------v~~s-d~~s~L~cr~~~~~~i~~gk~~~~~~LF~~~~l~~PgfVEFDd~Ng 198 (396)
..++.+|+.+-|+..-+-+-+-| +|.+ ++=+.-.|-+- -|. ..| =-=...-.||.| |
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~----Wra---h~~--Si~rV~WAhPEf-------G 73 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSS----WRA---HDG--SIWRVVWAHPEF-------G 73 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeee----EEe---cCC--cEEEEEecCccc-------c
Confidence 44667889998888888776633 3331 11111111110 000 000 001245567887 9
Q ss_pred cEEEeecCCCeEEEEec---------cCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEE
Q 016020 199 KVLTYSAQDSIYKVFDL---------KNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFY 267 (396)
Q Consensus 199 kIlt~~a~d~~YrVwdl---------knYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~ 267 (396)
.|+|.++-|.+.+||-= +.....-++.| -.|.+|+|+|-++=|.+....++..|+|+..-+=-.|..-.
T Consensus 74 qvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~ 153 (361)
T KOG2445|consen 74 QVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWT 153 (361)
T ss_pred ceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccch
Confidence 99999999999999976 34457778888 78999999999988888888889999999887754444211
Q ss_pred ---------eecccCCccch------hhhhcceeeEeecC-----CeeeEEEcc--cceEEE--ecccccCCCceEEEee
Q 016020 268 ---------HLLHRNKKVDF------IEQFNEKLLVKQEN-----ENLQILDVR--NAELME--VSRTEFMTPSAFIFLY 323 (396)
Q Consensus 268 ---------~~L~~sk~i~F------iE~~~ekLLIKQed-----~~L~I~Dv~--~~ki~~--v~~t~~~~PsAFiFly 323 (396)
..+...+-.+| .+-..++|.++..+ ...+||--- .+|..+ .++++.++.++.-|-|
T Consensus 154 Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAP 233 (361)
T KOG2445|consen 154 LQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAP 233 (361)
T ss_pred hhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeecc
Confidence 01111111111 22234566666654 366776443 345555 5669999999999988
Q ss_pred cCe-----EEEEEEcCeEEEEeccc---------------------ceeeeecccc--ccCCC-CCCCcEEEccCCcEEE
Q 016020 324 ENQ-----LFLTFRNRTVAVWNFRG---------------------ELVTSFEDHL--LWHPD-CNTNNIYITSDQDLII 374 (396)
Q Consensus 324 ~~q-----LFLTfs~gti~iWd~~g---------------------eL~t~fedh~--l~~~~-c~~n~~~it~~qd~ii 374 (396)
.-. |=+.-.+| |.||.+.+ +++..|+||. -|.-- =-++++..|+.-|=-+
T Consensus 234 n~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~V 312 (361)
T KOG2445|consen 234 NIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCV 312 (361)
T ss_pred ccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCcee
Confidence 432 23334446 99999884 2566788886 22111 3467777777777665
Q ss_pred EeccCCCCCcc
Q 016020 375 SYCKAEPEDQW 385 (396)
Q Consensus 375 ~~~~~~~~~~~ 385 (396)
---|+.-.++|
T Consensus 313 RLWkany~n~~ 323 (361)
T KOG2445|consen 313 RLWKANYNNLW 323 (361)
T ss_pred eehhhhhhhhh
Confidence 55555555555
No 198
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=93.98 E-value=1.2 Score=46.42 Aligned_cols=137 Identities=14% Similarity=0.237 Sum_probs=101.7
Q ss_pred EEeecCCCeEEEEeccCceEEEEeccC-----ceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCc
Q 016020 201 LTYSAQDSIYKVFDLKNYTMLYSISDK-----HVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKK 275 (396)
Q Consensus 201 lt~~a~d~~YrVwdlknYs~lysIs~~-----~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~ 275 (396)
|.-..+++ +-|+|++|+++|-.|..- .++.+-++++--.|.+-..-...-+.|||..+=+....+. .|...
T Consensus 100 LvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~---aH~~~ 175 (391)
T KOG2110|consen 100 LVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTIN---AHKGP 175 (391)
T ss_pred EEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEE---ecCCc
Confidence 33345555 779999999999999873 4555555555557777777778999999999998888888 66666
Q ss_pred ---cchhhhhcceeeEeecCC-eeeEEEcccceEEE-eccccc-CCCceEEEeecCeEEEEEEc--CeEEEEeccc
Q 016020 276 ---VDFIEQFNEKLLVKQENE-NLQILDVRNAELME-VSRTEF-MTPSAFIFLYENQLFLTFRN--RTVAVWNFRG 343 (396)
Q Consensus 276 ---i~FiE~~~ekLLIKQed~-~L~I~Dv~~~ki~~-v~~t~~-~~PsAFiFly~~qLFLTfs~--gti~iWd~~g 343 (396)
+.|.. .|.+|....|.+ -||++++-+|+... --|+.. -......|.++++ ||+.++ +||-|+-+.-
T Consensus 176 lAalafs~-~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~-~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 176 LAALAFSP-DGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQ-FLAASSNTETVHIFKLEK 249 (391)
T ss_pred eeEEEECC-CCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCC-eEEEecCCCeEEEEEecc
Confidence 77887 999999999655 57999999976553 333332 2346778999999 555544 7998887654
No 199
>PRK01029 tolB translocation protein TolB; Provisional
Probab=93.87 E-value=3.9 Score=42.08 Aligned_cols=151 Identities=9% Similarity=0.137 Sum_probs=86.8
Q ss_pred eEEeeCCCCcEEEeecCC----CeE-EEEeccCc--eEEEEecc---CceEEEEEcCCeE-EEEEecCCCeeeeEEEEee
Q 016020 190 FVEFDDVNGKVLTYSAQD----SIY-KVFDLKNY--TMLYSISD---KHVQEIKISPGIM-LLIFNRSSSHVPLKILSIE 258 (396)
Q Consensus 190 fVEFDd~NgkIlt~~a~d----~~Y-rVwdlknY--s~lysIs~---~~VqEIkiSpg~~-Ll~~q~~~~~iplkIl~Ie 258 (396)
...|.+ .|+.|++.+.. ..| ..||+.+. ...-.+.. ....+..|||+-- |++.....+..-+-++++.
T Consensus 235 ~p~wSP-DG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~ 313 (428)
T PRK01029 235 MPTFSP-RKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQID 313 (428)
T ss_pred ceEECC-CCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECc
Confidence 346776 78888876531 233 33777653 23344443 2346789997743 4443333333334455554
Q ss_pred c-CcEEEEEEeecccCCccchhhhhcceeeEee-c--CCeeeEEEcccceEEEecccccCCCceEEEeecCeE-EEEEEc
Q 016020 259 D-GTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ-E--NENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQL-FLTFRN 333 (396)
Q Consensus 259 t-G~~l~s~~~~L~~sk~i~FiE~~~ekLLIKQ-e--d~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qL-FLTfs~ 333 (396)
. |+....+...-.....+.|.+ +|++|+.-. + ...|.+||+.+++...+..+ ........|.++++. +++...
T Consensus 314 ~~g~~~~~lt~~~~~~~~p~wSP-DG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~-~~~~~~p~wSpDG~~L~f~~~~ 391 (428)
T PRK01029 314 PEGQSPRLLTKKYRNSSCPAWSP-DGKKIAFCSVIKGVRQICVYDLATGRDYQLTTS-PENKESPSWAIDSLHLVYSAGN 391 (428)
T ss_pred ccccceEEeccCCCCccceeECC-CCCEEEEEEcCCCCcEEEEEECCCCCeEEccCC-CCCccceEECCCCCEEEEEECC
Confidence 2 333332321111223467777 788887643 3 24799999999999887544 234566778988764 334332
Q ss_pred ---CeEEEEeccc
Q 016020 334 ---RTVAVWNFRG 343 (396)
Q Consensus 334 ---gti~iWd~~g 343 (396)
..+-+||++|
T Consensus 392 ~g~~~L~~vdl~~ 404 (428)
T PRK01029 392 SNESELYLISLIT 404 (428)
T ss_pred CCCceEEEEECCC
Confidence 4677788887
No 200
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=93.86 E-value=0.11 Score=57.10 Aligned_cols=83 Identities=20% Similarity=0.233 Sum_probs=68.5
Q ss_pred eeeEEEEeecCcEEEEEEeecccCCccchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEE
Q 016020 250 VPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFL 329 (396)
Q Consensus 250 iplkIl~IetG~~l~s~~~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFL 329 (396)
-|-+|+.++ |+++.++. |-++--+-|++..-|..|++||+++.+.+.-+-+|.+..-.|-.++++++.-
T Consensus 668 tPe~~lt~h-~eKI~slR----------fHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~A 736 (1012)
T KOG1445|consen 668 TPEKILTIH-GEKITSLR----------FHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIA 736 (1012)
T ss_pred Ccceeeecc-cceEEEEE----------ecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCccee
Confidence 455666665 34555555 4455667889999999999999999999998899999999999999999999
Q ss_pred EEEc-CeEEEEeccc
Q 016020 330 TFRN-RTVAVWNFRG 343 (396)
Q Consensus 330 Tfs~-gti~iWd~~g 343 (396)
|+.. |++.+|+-+.
T Consensus 737 tVcKDg~~rVy~Prs 751 (1012)
T KOG1445|consen 737 TVCKDGTLRVYEPRS 751 (1012)
T ss_pred eeecCceEEEeCCCC
Confidence 9987 9999998665
No 201
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=93.79 E-value=0.11 Score=53.41 Aligned_cols=81 Identities=12% Similarity=0.239 Sum_probs=70.4
Q ss_pred ccCCccchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc-CeEEEEeccc-ceee-
Q 016020 271 HRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNFRG-ELVT- 347 (396)
Q Consensus 271 ~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~~g-eL~t- 347 (396)
++..-++|.. -|.+|.++=-|+.+.|||+.|..+-+|.-+|--+..+.-.++++.+.||.|- .+|+.||+.. .++-
T Consensus 24 ~~a~~~~Fs~-~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~r 102 (405)
T KOG1273|consen 24 PLAECCQFSR-WGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKR 102 (405)
T ss_pred CccceEEecc-CcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeE
Confidence 3345589998 9999999999999999999999999999999999999999999999999887 8999999876 5433
Q ss_pred -eeccc
Q 016020 348 -SFEDH 352 (396)
Q Consensus 348 -~fedh 352 (396)
.|+--
T Consensus 103 irf~sp 108 (405)
T KOG1273|consen 103 IRFDSP 108 (405)
T ss_pred EEccCc
Confidence 45443
No 202
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=93.74 E-value=0.72 Score=50.30 Aligned_cols=147 Identities=17% Similarity=0.297 Sum_probs=100.6
Q ss_pred CeEEeeCCCCcEE-EeecCCCeEEEEeccCceEEEEeccCceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEE
Q 016020 189 GFVEFDDVNGKVL-TYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFY 267 (396)
Q Consensus 189 gfVEFDd~NgkIl-t~~a~d~~YrVwdlknYs~lysIs~~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~ 267 (396)
-||.+.+ -|--| |++.+ | +.+|.=++|.++=...+-+||=|-+||.=--|+.-++.
T Consensus 214 tyv~wSP-~GTYL~t~Hk~-G-I~lWGG~~f~r~~RF~Hp~Vq~idfSP~EkYLVT~s~~-------------------- 270 (698)
T KOG2314|consen 214 TYVRWSP-KGTYLVTFHKQ-G-IALWGGESFDRIQRFYHPGVQFIDFSPNEKYLVTYSPE-------------------- 270 (698)
T ss_pred eeEEecC-CceEEEEEecc-c-eeeecCccHHHHHhccCCCceeeecCCccceEEEecCC--------------------
Confidence 4777888 44444 44433 3 78999999999999999999999999987666655541
Q ss_pred eecccCCccchhhhhcceeeEeecCCeeeEEEcccceEEE---ecccccCCCceEEEeecCeEEEEEEcCeEEEEeccc-
Q 016020 268 HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELME---VSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRG- 343 (396)
Q Consensus 268 ~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~---v~~t~~~~PsAFiFly~~qLFLTfs~gti~iWd~~g- 343 (396)
+-..+- ++-|++.|.||||+||.+.+ +.++....=.-|..+++...|--.--++|.||+.-.
T Consensus 271 ---p~~~~~-----------~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf 336 (698)
T KOG2314|consen 271 ---PIIVEE-----------DDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSF 336 (698)
T ss_pred ---ccccCc-----------ccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCce
Confidence 110110 16789999999999999987 333444444567889999999888889999999887
Q ss_pred ceee------eeccccccCCCCCCCcEEEccCCcEEEEeccCCCCCc
Q 016020 344 ELVT------SFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQ 384 (396)
Q Consensus 344 eL~t------~fedh~l~~~~c~~n~~~it~~qd~ii~~~~~~~~~~ 384 (396)
.|+- +==+...| ||+ +-++.|.-.+.+++
T Consensus 337 ~lld~Kslki~gIr~Fsw---sP~---------~~llAYwtpe~~~~ 371 (698)
T KOG2314|consen 337 MLLDKKSLKISGIRDFSW---SPT---------SNLLAYWTPETNNI 371 (698)
T ss_pred eeecccccCCccccCccc---CCC---------cceEEEEcccccCC
Confidence 3321 11123456 666 44666766554443
No 203
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=93.68 E-value=0.19 Score=51.78 Aligned_cols=194 Identities=18% Similarity=0.301 Sum_probs=123.2
Q ss_pred eEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcceee-cccCCCCeEEeeCCCCcEEEeecCCCe
Q 016020 131 VIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFES-ESLKWPGFVEFDDVNGKVLTYSAQDSI 209 (396)
Q Consensus 131 vIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF~~-~~l~~PgfVEFDd~NgkIlt~~a~d~~ 209 (396)
-.++.-....-..|.+-| .+ .+|+|--.|.+..-++- .+..+|+. .++++| .+
T Consensus 51 f~kgckWSPDGSciL~~s----ed-n~l~~~nlP~dlys~~~--~~~~~~~~~~~~r~~------------------eg- 104 (406)
T KOG2919|consen 51 FLKGCKWSPDGSCILSLS----ED-NCLNCWNLPFDLYSKKA--DGPLNFSKHLSYRYQ------------------EG- 104 (406)
T ss_pred hhccceeCCCCceEEeec----cc-CeeeEEecChhhcccCC--CCccccccceeEEec------------------cC-
Confidence 445555554444443322 23 67999999888776642 23334433 222222 11
Q ss_pred EEEEeccCceEEEEeccCceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEee-----cccCCccchhhhhcc
Q 016020 210 YKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHL-----LHRNKKVDFIEQFNE 284 (396)
Q Consensus 210 YrVwdlknYs~lysIs~~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~-----L~~sk~i~FiE~~~e 284 (396)
-.|+|.--|+.+.+.. |...|.+..+. +-|++|||..||+.-.++.-. +.-.-.++|.+ +||
T Consensus 105 ~tvydy~wYs~M~s~q----------P~t~l~a~ssr--~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~-DGe 171 (406)
T KOG2919|consen 105 ETVYDYCWYSRMKSDQ----------PSTNLFAVSSR--DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSP-DGE 171 (406)
T ss_pred CEEEEEEeeeccccCC----------Cccceeeeccc--cCceeeeeccccccccchhhhhhHHhhhhheeEEecC-CCC
Confidence 2467777788888776 78887776666 789999999999988876511 11122389999 999
Q ss_pred eeeEeecCCeeeEEEc-ccceEEEecccc-------cCCCceEEEeecCeEEEEEEc--CeEEEEecccc--eeeeecc-
Q 016020 285 KLLVKQENENLQILDV-RNAELMEVSRTE-------FMTPSAFIFLYENQLFLTFRN--RTVAVWNFRGE--LVTSFED- 351 (396)
Q Consensus 285 kLLIKQed~~L~I~Dv-~~~ki~~v~~t~-------~~~PsAFiFly~~qLFLTfs~--gti~iWd~~ge--L~t~fed- 351 (396)
+|+-+ .+..|+++|+ +.|.--.+-.|. .--.+.|-|.|...-.+..-. +++-||.-++. |-+.++.
T Consensus 172 qlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~ 250 (406)
T KOG2919|consen 172 QLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHG 250 (406)
T ss_pred eEeec-ccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccC
Confidence 98755 6778999999 444433332222 224688999997775555544 79999998884 4444432
Q ss_pred ----ccccCCCCCCCcEEEc
Q 016020 352 ----HLLWHPDCNTNNIYIT 367 (396)
Q Consensus 352 ----h~l~~~~c~~n~~~it 367 (396)
|+-| |+++|.+.+
T Consensus 251 gGvThL~~---~edGn~lfs 267 (406)
T KOG2919|consen 251 GGVTHLQW---CEDGNKLFS 267 (406)
T ss_pred CCeeeEEe---ccCcCeecc
Confidence 5666 666666554
No 204
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=93.54 E-value=0.63 Score=48.11 Aligned_cols=144 Identities=11% Similarity=0.287 Sum_probs=95.3
Q ss_pred CcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCc
Q 016020 198 GKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKK 275 (396)
Q Consensus 198 gkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~ 275 (396)
|+...--+=|.+--+||.++...+-.+++ .+..-.---|.--|.+..+. +-.+.+||.- +-+.+..-+.+|+--
T Consensus 284 g~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSr--DtTFRLWDFR--eaI~sV~VFQGHtdt 359 (481)
T KOG0300|consen 284 GQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSR--DTTFRLWDFR--EAIQSVAVFQGHTDT 359 (481)
T ss_pred cceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEecc--CceeEeccch--hhcceeeeecccccc
Confidence 33333334488999999999999999987 33333333466666666666 5778889876 334444444466554
Q ss_pred ---cchhhhhcceeeEeecCCeeeEEEcccc-eEEEecccccCCCceEEEeecCeEEEEE--EcCeEEEEecccceeeee
Q 016020 276 ---VDFIEQFNEKLLVKQENENLQILDVRNA-ELMEVSRTEFMTPSAFIFLYENQLFLTF--RNRTVAVWNFRGELVTSF 349 (396)
Q Consensus 276 ---i~FiE~~~ekLLIKQed~~L~I~Dv~~~-ki~~v~~t~~~~PsAFiFly~~qLFLTf--s~gti~iWd~~geL~t~f 349 (396)
+-|. -+.+++.+.+|..++|||+++- .-+-+-+ .+.|.-=+.+-.++-...+ -|+-|+++|++|+.+..+
T Consensus 360 VTS~vF~--~dd~vVSgSDDrTvKvWdLrNMRsplATIR--tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRl 435 (481)
T KOG0300|consen 360 VTSVVFN--TDDRVVSGSDDRTVKVWDLRNMRSPLATIR--TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARL 435 (481)
T ss_pred eeEEEEe--cCCceeecCCCceEEEeeeccccCcceeee--cCCccceeEeecCCceEEeccCCceEEEEecCCCccccC
Confidence 2232 4689999999999999999982 2222222 3455555666666654444 458999999999866544
No 205
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=93.16 E-value=3.2 Score=38.67 Aligned_cols=157 Identities=17% Similarity=0.243 Sum_probs=101.1
Q ss_pred CCCeEEEEeccCceEEE---------------Eecc-CceEEEE----EcCCeEEEEEecCCCeeeeEEEEeecC-----
Q 016020 206 QDSIYKVFDLKNYTMLY---------------SISD-KHVQEIK----ISPGIMLLIFNRSSSHVPLKILSIEDG----- 260 (396)
Q Consensus 206 ~d~~YrVwdlknYs~ly---------------sIs~-~~VqEIk----iSpg~~Ll~~q~~~~~iplkIl~IetG----- 260 (396)
.|+...+++|.+....+ .+.. .+++-++ ...+..|.+.... .+.||....+
T Consensus 54 sd~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk----~i~i~~~~~~~~~f~ 129 (275)
T PF00780_consen 54 SDGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKK----KILIYEWNDPRNSFS 129 (275)
T ss_pred cCCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECC----EEEEEEEECCccccc
Confidence 35777778877777666 4443 5677666 3344455444444 7888888774
Q ss_pred cEEEEEEeecccCCccchhhhhcceeeEeecCCeeeEEEcccceEEEecccccC-----------CCceEEEeecCeEEE
Q 016020 261 TVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFM-----------TPSAFIFLYENQLFL 329 (396)
Q Consensus 261 ~~l~s~~~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~-----------~PsAFiFly~~qLFL 329 (396)
+.++++.. + ..+..+.-++.+|.+...++ ..++|+.++....++..... .|-+-+=++++++.|
T Consensus 130 ~~~ke~~l--p--~~~~~i~~~~~~i~v~~~~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll 204 (275)
T PF00780_consen 130 KLLKEISL--P--DPPSSIAFLGNKICVGTSKG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLL 204 (275)
T ss_pred ceeEEEEc--C--CCcEEEEEeCCEEEEEeCCc-eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEE
Confidence 45566553 2 34444555589999998665 99999999998887644332 355555566666666
Q ss_pred EEEcCeEEEEecccceeeeeccccccCCCCCCCcEEEccCCcEEEEecc
Q 016020 330 TFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCK 378 (396)
Q Consensus 330 Tfs~gti~iWd~~geL~t~fedh~l~~~~c~~n~~~it~~qd~ii~~~~ 378 (396)
.+ ++.--+-|.+|+... ...+-|... |..-.| ....||....
T Consensus 205 ~~-~~~g~fv~~~G~~~r--~~~i~W~~~-p~~~~~---~~pyli~~~~ 246 (275)
T PF00780_consen 205 CY-DNIGVFVNKNGEPSR--KSTIQWSSA-PQSVAY---SSPYLIAFSS 246 (275)
T ss_pred Ee-cceEEEEcCCCCcCc--ccEEEcCCc-hhEEEE---ECCEEEEECC
Confidence 54 567778899998666 788889653 333333 3345555544
No 206
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=93.10 E-value=0.15 Score=56.94 Aligned_cols=74 Identities=19% Similarity=0.353 Sum_probs=63.5
Q ss_pred ceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCe----EEEEEEcCeEEEEeccc-ceeeeeccccccCC
Q 016020 284 EKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQ----LFLTFRNRTVAVWNFRG-ELVTSFEDHLLWHP 357 (396)
Q Consensus 284 ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~q----LFLTfs~gti~iWd~~g-eL~t~fedh~l~~~ 357 (396)
++-|+-+-+..++||.+.|++++.++..+.++...-++++... +|+.+.+|+|.+||... +|.+.||-+..-|.
T Consensus 28 ~k~l~~~~~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~ 106 (792)
T KOG1963|consen 28 AKFLFLCTGNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHA 106 (792)
T ss_pred CcEEEEeeCCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeE
Confidence 4555668899999999999999999999999999999998666 46777779999999998 89998888776543
No 207
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=93.07 E-value=12 Score=38.48 Aligned_cols=240 Identities=10% Similarity=0.082 Sum_probs=133.5
Q ss_pred ccceeeeccccceEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCC-----CCCcceee
Q 016020 108 GVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPD-----SGFALFES 182 (396)
Q Consensus 108 G~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~-----~~~~LF~~ 182 (396)
|.-.++|..+++.+=.|-.+..= |-+ .++.+..|-+++.|.+----+-....+.+=+...+++- .+.|-|.
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P--~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~- 102 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLP--NPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFL- 102 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCC--cee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhh-
Confidence 77788888888888877765433 335 77777777776665332222222233333333333321 2234455
Q ss_pred cccCCCCeEEeeCCCCcEEE-eecC-CCeEEEEeccCceEEEEeccCceEEEEEcCCeEEEEEecCCCe-----eeeEEE
Q 016020 183 ESLKWPGFVEFDDVNGKVLT-YSAQ-DSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRSSSH-----VPLKIL 255 (396)
Q Consensus 183 ~~l~~PgfVEFDd~NgkIlt-~~a~-d~~YrVwdlknYs~lysIs~~~VqEIkiSpg~~Ll~~q~~~~~-----iplkIl 255 (396)
...+|..+-+.+ +||.|- ++-. +...-|.|+...+.+.+|.= -++..++......+. ..+.-.
T Consensus 103 -~~~~~~~~~ls~-dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v--------p~~~~vy~t~e~~~~~~~~Dg~~~~v 172 (352)
T TIGR02658 103 -VGTYPWMTSLTP-DNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV--------PDCYHIFPTANDTFFMHCRDGSLAKV 172 (352)
T ss_pred -ccCccceEEECC-CCCEEEEecCCCCCEEEEEECCCCcEEEEEeC--------CCCcEEEEecCCccEEEeecCceEEE
Confidence 577899999999 777655 6644 99999999999998887773 222333332222111 111111
Q ss_pred Eee-cCcEEEEEEeeccc------CCccchhhhhcceeeEeecCCeeeEEEccc-----ceEEEeccc----ccCCCce-
Q 016020 256 SIE-DGTVLKVFYHLLHR------NKKVDFIEQFNEKLLVKQENENLQILDVRN-----AELMEVSRT----EFMTPSA- 318 (396)
Q Consensus 256 ~Ie-tG~~l~s~~~~L~~------sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~-----~ki~~v~~t----~~~~PsA- 318 (396)
.+. +|+....-....+. .++ .|....|.++.+-.| +.+.+.|+.. .+...+... ....|..
T Consensus 173 ~~d~~g~~~~~~~~vf~~~~~~v~~rP-~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~ 250 (352)
T TIGR02658 173 GYGTKGNPKIKPTEVFHPEDEYLINHP-AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGW 250 (352)
T ss_pred EecCCCceEEeeeeeecCCccccccCC-ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcc
Confidence 111 22211111101111 122 565658888889999 9999999544 444433211 1223333
Q ss_pred --EEEeec-CeEEEEE--------Ec--CeEEEEeccc-ceeeeec-cccccCCC-CCCCc
Q 016020 319 --FIFLYE-NQLFLTF--------RN--RTVAVWNFRG-ELVTSFE-DHLLWHPD-CNTNN 363 (396)
Q Consensus 319 --FiFly~-~qLFLTf--------s~--gti~iWd~~g-eL~t~fe-dh~l~~~~-c~~n~ 363 (396)
.-+.++ +.||+.- .. +.|.++|... +.+..++ ++.+|..- .+|++
T Consensus 251 q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgk 311 (352)
T TIGR02658 251 QQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAK 311 (352)
T ss_pred eeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCC
Confidence 555545 5666643 12 5899999988 6776665 67777433 44433
No 208
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=93.02 E-value=0.93 Score=47.62 Aligned_cols=130 Identities=20% Similarity=0.299 Sum_probs=84.6
Q ss_pred EEeeCCCCc-EEEeecCCCeEEEEeccCc-------e--EEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEee
Q 016020 191 VEFDDVNGK-VLTYSAQDSIYKVFDLKNY-------T--MLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIE 258 (396)
Q Consensus 191 VEFDd~Ngk-Ilt~~a~d~~YrVwdlknY-------s--~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~Ie 258 (396)
|+|-. |+. .+|....|..+|+|-+..- + .+=+++. ..|--||++|.--||.+.++
T Consensus 19 ~dfq~-n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D------------ 85 (434)
T KOG1009|consen 19 VDFQK-NSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGD------------ 85 (434)
T ss_pred EEecc-CcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCC------------
Confidence 44444 454 7888888999999976432 2 2223333 56666777766666666665
Q ss_pred cCcEEEEEEeecccCCccchhhhhcceeeEeecCCeeeEEEccc--------ceEEEecccccCCCceEEEeecCeEEEE
Q 016020 259 DGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN--------AELMEVSRTEFMTPSAFIFLYENQLFLT 330 (396)
Q Consensus 259 tG~~l~s~~~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~--------~ki~~v~~t~~~~PsAFiFly~~qLFLT 330 (396)
.++-+|-||.+ .+|.|-.+ -...++.++|...+.-.-..++++...+
T Consensus 86 -----------------------~g~v~lWk~~~--~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s 140 (434)
T KOG1009|consen 86 -----------------------GGEVFLWKQGD--VRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVS 140 (434)
T ss_pred -----------------------CceEEEEEecC--cCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeee
Confidence 22222223332 22222223 2445577788888888888888877666
Q ss_pred EEc-CeEEEEeccc-ceeeeeccccccCCC
Q 016020 331 FRN-RTVAVWNFRG-ELVTSFEDHLLWHPD 358 (396)
Q Consensus 331 fs~-gti~iWd~~g-eL~t~fedh~l~~~~ 358 (396)
-|= +++.+||++- ++.+-++||--+++.
T Consensus 141 ~s~dns~~l~Dv~~G~l~~~~~dh~~yvqg 170 (434)
T KOG1009|consen 141 GSVDNSVRLWDVHAGQLLAILDDHEHYVQG 170 (434)
T ss_pred eeccceEEEEEeccceeEeeccccccccce
Confidence 665 8999999987 899999999888766
No 209
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=92.94 E-value=3.5 Score=44.19 Aligned_cols=174 Identities=18% Similarity=0.270 Sum_probs=108.4
Q ss_pred eEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc---CceEEEEEc-----------CCeEEEEEecCCCeeeeEEE
Q 016020 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD---KHVQEIKIS-----------PGIMLLIFNRSSSHVPLKIL 255 (396)
Q Consensus 190 fVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~---~~VqEIkiS-----------pg~~Ll~~q~~~~~iplkIl 255 (396)
-|-|-+ +.-+|.-...|++.| +|.|++ .-||.|.+. .|...++..+. --.+..|
T Consensus 218 sv~FHp-~~plllvaG~d~~lr---------ifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~r--rky~ysy 285 (514)
T KOG2055|consen 218 SVQFHP-TAPLLLVAGLDGTLR---------IFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGR--RKYLYSY 285 (514)
T ss_pred EEEecC-CCceEEEecCCCcEE---------EEEecCccChhheeeeeccCccceeeecCCCceEEEeccc--ceEEEEe
Confidence 355555 233333334566555 455555 345555544 35534444444 3788999
Q ss_pred EeecCcEEEEEEeecccCCccchhhhh-----cceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEE
Q 016020 256 SIEDGTVLKVFYHLLHRNKKVDFIEQF-----NEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLT 330 (396)
Q Consensus 256 ~IetG~~l~s~~~~L~~sk~i~FiE~~-----~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLT 330 (396)
|+++++..+-=. +.+-+=+++|.| +.+|++.-.++-|.++-..|++++-.-.- ---.++|.|.-++...+.
T Consensus 286 Dle~ak~~k~~~---~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Ki-eG~v~~~~fsSdsk~l~~ 361 (514)
T KOG2055|consen 286 DLETAKVTKLKP---PYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKI-EGVVSDFTFSSDSKELLA 361 (514)
T ss_pred eccccccccccC---CCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeee-ccEEeeEEEecCCcEEEE
Confidence 999999876211 222233356655 78999999999999999999998853222 224588999888766555
Q ss_pred EE-cCeEEEEecccc-eeeeecccccc--CCCC--CCCcEEEccCCcEEEEeccC
Q 016020 331 FR-NRTVAVWNFRGE-LVTSFEDHLLW--HPDC--NTNNIYITSDQDLIISYCKA 379 (396)
Q Consensus 331 fs-~gti~iWd~~ge-L~t~fedh~l~--~~~c--~~n~~~it~~qd~ii~~~~~ 379 (396)
.. +|.|-+||++-. .+..|-|.=.- +..| .+..++-|..+-=||--|+-
T Consensus 362 ~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~ 416 (514)
T KOG2055|consen 362 SGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDG 416 (514)
T ss_pred EcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEecc
Confidence 54 499999999985 44455444333 2335 56666666666666665553
No 210
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=92.27 E-value=0.33 Score=52.44 Aligned_cols=165 Identities=18% Similarity=0.234 Sum_probs=117.8
Q ss_pred CCcEEEeecCCCeEEEEeccCceE-E---EEeccCceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeeccc
Q 016020 197 NGKVLTYSAQDSIYKVFDLKNYTM-L---YSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHR 272 (396)
Q Consensus 197 NgkIlt~~a~d~~YrVwdlknYs~-l---ysIs~~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~ 272 (396)
+|+-|.-...-++.-||||..=+. + -.=++-+-+-+.+||+.-|.+.--. +.-+.|||+++-.....|. +|
T Consensus 476 dgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccs--dGnI~vwDLhnq~~Vrqfq---Gh 550 (705)
T KOG0639|consen 476 DGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCS--DGNIAVWDLHNQTLVRQFQ---GH 550 (705)
T ss_pred CCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeecc--CCcEEEEEcccceeeeccc---CC
Confidence 588888778889999999987762 2 1223366777899999999888877 6678999999999888877 55
Q ss_pred CCc---cchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEee----cC-eEEEEEEcCeEEEEeccc-
Q 016020 273 NKK---VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLY----EN-QLFLTFRNRTVAVWNFRG- 343 (396)
Q Consensus 273 sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly----~~-qLFLTfs~gti~iWd~~g- 343 (396)
+-- |+-. .+|-+|-.+-=|..++.||++.++-. ..|.| +.+||+- ++ =|-|-.-|+.++|-...|
T Consensus 551 tDGascIdis-~dGtklWTGGlDntvRcWDlregrql---qqhdF--~SQIfSLg~cP~~dWlavGMens~vevlh~skp 624 (705)
T KOG0639|consen 551 TDGASCIDIS-KDGTKLWTGGLDNTVRCWDLREGRQL---QQHDF--SSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKP 624 (705)
T ss_pred CCCceeEEec-CCCceeecCCCccceeehhhhhhhhh---hhhhh--hhhheecccCCCccceeeecccCcEEEEecCCc
Confidence 433 5533 37999999999999999999985432 24554 4566642 22 234556678899988888
Q ss_pred c--eeeeeccccccCCCCCCCcEEEccCCcE
Q 016020 344 E--LVTSFEDHLLWHPDCNTNNIYITSDQDL 372 (396)
Q Consensus 344 e--L~t~fedh~l~~~~c~~n~~~it~~qd~ 372 (396)
+ -++.=|--+|..-+-+-++-|+|..-|=
T Consensus 625 ~kyqlhlheScVLSlKFa~cGkwfvStGkDn 655 (705)
T KOG0639|consen 625 EKYQLHLHESCVLSLKFAYCGKWFVSTGKDN 655 (705)
T ss_pred cceeecccccEEEEEEecccCceeeecCchh
Confidence 3 3444444455555567778888766553
No 211
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=92.24 E-value=2.4 Score=47.24 Aligned_cols=164 Identities=11% Similarity=0.161 Sum_probs=115.3
Q ss_pred eeeeEeeehhhhhhCCCCCCCcceeecccCCCCeEEeeCCCCcEEEeecCCCeEEEEecc-Cce-EEEEeccCceEEEEE
Q 016020 157 SLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLK-NYT-MLYSISDKHVQEIKI 234 (396)
Q Consensus 157 ~L~cr~~~~~~i~~gk~~~~~~LF~~~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlk-nYs-~lysIs~~~VqEIki 234 (396)
.|+.+..++++++.=+. ++ .|. -+.+...|+.++.|-++ +|- ++|.|.+-..-.+-+
T Consensus 49 ~l~GH~a~VnC~~~l~~--------s~---~~a----------~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~~~cv 107 (764)
T KOG1063|consen 49 TLDGHVARVNCVHWLPT--------SE---IVA----------EMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKECVCV 107 (764)
T ss_pred eccCCccceEEEEEccc--------cc---ccc----------eEEEccCCCcEEEEEEeehheEEEEeecCcceeEEEE
Confidence 37777777777776332 22 122 24456789999999999 554 899999877777788
Q ss_pred cCCeEEEEEecCCCeeeeEEEEeecCc--EEEEEEeecccCCccchhhhhcceeeEeecCCeeeEEEcccce-----EEE
Q 016020 235 SPGIMLLIFNRSSSHVPLKILSIEDGT--VLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE-----LME 307 (396)
Q Consensus 235 Spg~~Ll~~q~~~~~iplkIl~IetG~--~l~s~~~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~k-----i~~ 307 (396)
.....++... ..+-.+.+|+++.-+ .+..+++-..---++++-+.-+++..+-.-|++..+.++..+. ...
T Consensus 108 ~a~~~~~~~~--~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~ 185 (764)
T KOG1063|consen 108 VARSSVMTCK--AADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVA 185 (764)
T ss_pred EeeeeEEEee--ccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEE
Confidence 8888877773 456778899997666 3333332111111145555558888888888888888888754 555
Q ss_pred ecccccCCCceEEEeec--CeEEEEEEc--CeEEEEeccc
Q 016020 308 VSRTEFMTPSAFIFLYE--NQLFLTFRN--RTVAVWNFRG 343 (396)
Q Consensus 308 v~~t~~~~PsAFiFly~--~qLFLTfs~--gti~iWd~~g 343 (396)
.+++|.++.+..=|... +.+||.-++ ++|+||...-
T Consensus 186 el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~ 225 (764)
T KOG1063|consen 186 ELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVL 225 (764)
T ss_pred EeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEe
Confidence 88999999999888653 368888777 8999998765
No 212
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=92.14 E-value=1.1 Score=45.31 Aligned_cols=148 Identities=12% Similarity=0.087 Sum_probs=97.1
Q ss_pred EEeeCCCCcEEEeecCCCeEEEEeccCc----------eEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEee
Q 016020 191 VEFDDVNGKVLTYSAQDSIYKVFDLKNY----------TMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIE 258 (396)
Q Consensus 191 VEFDd~NgkIlt~~a~d~~YrVwdlknY----------s~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~Ie 258 (396)
+.+++.+--.+++.-+++++-.||+-.. +..|-+-. +.|.++-+-+---==+...+ ...+..|++.
T Consensus 158 ~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga--~dkl~~~Sl~ 235 (323)
T KOG0322|consen 158 KDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGA--DDKLVMYSLN 235 (323)
T ss_pred ccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCc--cccceeeeec
Confidence 4677878888899999999999999997 33333322 45555544311100011111 2333444444
Q ss_pred c--CcEEEEEEeec--ccCCccchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc-
Q 016020 259 D--GTVLKVFYHLL--HRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN- 333 (396)
Q Consensus 259 t--G~~l~s~~~~L--~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~- 333 (396)
. |.....-.+-| +--..+. |-.++.-+...-=|+.++||+-++..-+-|++-|....-+.-|.++.+|+-..|.
T Consensus 236 ~s~gslq~~~e~~lknpGv~gvr-IRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD 314 (323)
T KOG0322|consen 236 HSTGSLQIRKEITLKNPGVSGVR-IRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKD 314 (323)
T ss_pred cccCcccccceEEecCCCccceE-EccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCC
Confidence 3 22222111111 1112233 4457777777779999999999999999999999999999999999999888877
Q ss_pred CeEEEEec
Q 016020 334 RTVAVWNF 341 (396)
Q Consensus 334 gti~iWd~ 341 (396)
+.|.+|++
T Consensus 315 ~rISLWkL 322 (323)
T KOG0322|consen 315 ARISLWKL 322 (323)
T ss_pred ceEEeeec
Confidence 89999985
No 213
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.86 E-value=2.2 Score=44.69 Aligned_cols=148 Identities=11% Similarity=0.154 Sum_probs=107.8
Q ss_pred EEeeCCCCcEEEeecCC--CeEEEEeccCceEEEEecc-----------CceEEEEEcCC--eEEEEEecCCCeeeeEEE
Q 016020 191 VEFDDVNGKVLTYSAQD--SIYKVFDLKNYTMLYSISD-----------KHVQEIKISPG--IMLLIFNRSSSHVPLKIL 255 (396)
Q Consensus 191 VEFDd~NgkIlt~~a~d--~~YrVwdlknYs~lysIs~-----------~~VqEIkiSpg--~~Ll~~q~~~~~iplkIl 255 (396)
++=++.---|+|+..-. ...++||+.+-+++++=.. .=+++|+|-|| ..-++.--. .-.+.++
T Consensus 154 ~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~--~hqvR~Y 231 (412)
T KOG3881|consen 154 VRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITR--YHQVRLY 231 (412)
T ss_pred eccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEec--ceeEEEe
Confidence 55666677788888887 8999999999998887654 12467888777 333333322 4567888
Q ss_pred EeecCcEEE-EEEeecccCCccchh--hhhcceeeEeecCCeeeEEEcccceEEEe-cccccCCCceEEEeecCeEEEEE
Q 016020 256 SIEDGTVLK-VFYHLLHRNKKVDFI--EQFNEKLLVKQENENLQILDVRNAELMEV-SRTEFMTPSAFIFLYENQLFLTF 331 (396)
Q Consensus 256 ~IetG~~l~-s~~~~L~~sk~i~Fi--E~~~ekLLIKQed~~L~I~Dv~~~ki~~v-~~t~~~~PsAFiFly~~qLFLTf 331 (396)
|...|..=+ .|.+. ...|-++ -+.+..|++.---+.|-++|++++++... .....-.++..+-.+..++..+-
T Consensus 232 Dt~~qRRPV~~fd~~---E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~ 308 (412)
T KOG3881|consen 232 DTRHQRRPVAQFDFL---ENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASC 308 (412)
T ss_pred cCcccCcceeEeccc---cCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEee
Confidence 888776544 34422 1112111 13577799999999999999999999986 88888899999988888876665
Q ss_pred Ec-CeEEEEeccc
Q 016020 332 RN-RTVAVWNFRG 343 (396)
Q Consensus 332 s~-gti~iWd~~g 343 (396)
.= |.++|+|.+-
T Consensus 309 GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 309 GLDRYVRIHDIKT 321 (412)
T ss_pred ccceeEEEeeccc
Confidence 53 9999999987
No 214
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=91.84 E-value=18 Score=37.74 Aligned_cols=141 Identities=11% Similarity=0.151 Sum_probs=92.5
Q ss_pred EEeeCCCCc---EEEeecCCCeEEEEeccCceEEEEeccCceEEEEEcCCeEEEEEec--------------CCCeeeeE
Q 016020 191 VEFDDVNGK---VLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNR--------------SSSHVPLK 253 (396)
Q Consensus 191 VEFDd~Ngk---Ilt~~a~d~~YrVwdlknYs~lysIs~~~VqEIkiSpg~~Ll~~q~--------------~~~~iplk 253 (396)
.+-.+++|. ++.....++.+..+|++|.+.+.+.+.. ...+..+|+.+.+-... ....--+.
T Consensus 291 ~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~-~~~~~~~~~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~ 369 (488)
T cd00216 291 ADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV-EQPMAYDPGLVYLGAFHIPLGLPPQKKKRCKKPGKGGLA 369 (488)
T ss_pred EeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee-ccccccCCceEEEccccccccCcccccCCCCCCCceEEE
Confidence 333345565 4444556888999999999999886532 24456677665543211 11234588
Q ss_pred EEEeecCcEEEEEEeecccCC-----cc--chhhhhcceeeEeecCCeeeEEEcccceEEE---ecccccCCCceEEEee
Q 016020 254 ILSIEDGTVLKVFYHLLHRNK-----KV--DFIEQFNEKLLVKQENENLQILDVRNAELME---VSRTEFMTPSAFIFLY 323 (396)
Q Consensus 254 Il~IetG~~l~s~~~~L~~sk-----~i--~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~---v~~t~~~~PsAFiFly 323 (396)
-+|..||+.+=+.....++.. +. -=+-..+..|++...++.|..+|..|++++- +......+| .+|..
T Consensus 370 AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~~~~~~a~P--~~~~~ 447 (488)
T cd00216 370 ALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKELWKFRTPSGIQATP--MTYEV 447 (488)
T ss_pred EEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCceeeEEECCCCceEcC--EEEEe
Confidence 899999999988774322211 00 0012367889999999999999999999874 433333334 55677
Q ss_pred cCeEEEEEEcC
Q 016020 324 ENQLFLTFRNR 334 (396)
Q Consensus 324 ~~qLFLTfs~g 334 (396)
++.+|+.+-+|
T Consensus 448 ~g~~yv~~~~g 458 (488)
T cd00216 448 NGKQYVGVMVG 458 (488)
T ss_pred CCEEEEEEEec
Confidence 99999999885
No 215
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=91.72 E-value=7.2 Score=42.36 Aligned_cols=154 Identities=18% Similarity=0.235 Sum_probs=103.3
Q ss_pred EEeeCCCCcEEEeecCCCeEEEEec-cCce--EEEEeccCceEEEEEcCC-----eEEEEEecCCCeeeeEEEEeecCcE
Q 016020 191 VEFDDVNGKVLTYSAQDSIYKVFDL-KNYT--MLYSISDKHVQEIKISPG-----IMLLIFNRSSSHVPLKILSIEDGTV 262 (396)
Q Consensus 191 VEFDd~NgkIlt~~a~d~~YrVwdl-knYs--~lysIs~~~VqEIkiSpg-----~~Ll~~q~~~~~iplkIl~IetG~~ 262 (396)
+.|.- +++-+|+= ..+.+.|.++ .|.. ....+.-++|+++.|||+ +..++-...+..--+.||+|--+..
T Consensus 137 ~k~s~-~D~y~ARv-v~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~ 214 (561)
T COG5354 137 LKFSI-DDKYVARV-VGSSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSV 214 (561)
T ss_pred eeeee-cchhhhhh-ccCeEEEEecCCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCe
Confidence 44443 34444433 3445556664 1111 233444589999999999 5555555555667789999999998
Q ss_pred EEEEEeecccCCccchhhhhcceeeEeec-----------CCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEE
Q 016020 263 LKVFYHLLHRNKKVDFIEQFNEKLLVKQE-----------NENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTF 331 (396)
Q Consensus 263 l~s~~~~L~~sk~i~FiE~~~ekLLIKQe-----------d~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTf 331 (396)
+++-++.-..+-.+-. ...|+|||+.-+ ..+|.|+++.-+ =+.|...-..++-.|.+.+.+.-|.++
T Consensus 215 l~tk~lfk~~~~qLkW-~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~-~i~V~~~~~~pVhdf~W~p~S~~F~vi 292 (561)
T COG5354 215 LVTKNLFKVSGVQLKW-QVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITER-SIPVEKDLKDPVHDFTWEPLSSRFAVI 292 (561)
T ss_pred eeeeeeEeecccEEEE-ecCCceEEEEEEEeeecccceeccceEEEEeeccc-ccceeccccccceeeeecccCCceeEE
Confidence 8865543233222222 347888887652 268999999844 444555567889999999999999999
Q ss_pred Ec---CeEEEEecccceeee
Q 016020 332 RN---RTVAVWNFRGELVTS 348 (396)
Q Consensus 332 s~---gti~iWd~~geL~t~ 348 (396)
+- -++.++|++|+|+-.
T Consensus 293 ~g~~pa~~s~~~lr~Nl~~~ 312 (561)
T COG5354 293 SGYMPASVSVFDLRGNLRFY 312 (561)
T ss_pred ecccccceeecccccceEEe
Confidence 93 799999999987643
No 216
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.54 E-value=2.2 Score=42.81 Aligned_cols=186 Identities=18% Similarity=0.288 Sum_probs=121.1
Q ss_pred CCCcEEEeecCCCeEEEEeccCce---EEEEecc--CceEEEEEcC---CeEEEEEecCCCeeeeEEEEeecCcEEEEEE
Q 016020 196 VNGKVLTYSAQDSIYKVFDLKNYT---MLYSISD--KHVQEIKISP---GIMLLIFNRSSSHVPLKILSIEDGTVLKVFY 267 (396)
Q Consensus 196 ~NgkIlt~~a~d~~YrVwdlknYs---~lysIs~--~~VqEIkiSp---g~~Ll~~q~~~~~iplkIl~IetG~~l~s~~ 267 (396)
.-||-||-++.|+++|||..++-. +|-++.+ --|+++.+-- |.+| .+..-+..+.||-=++|.=.+.-.
T Consensus 21 yygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iL---AScsYDgkVIiWke~~g~w~k~~e 97 (299)
T KOG1332|consen 21 YYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTIL---ASCSYDGKVIIWKEENGRWTKAYE 97 (299)
T ss_pred hhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEe---eEeecCceEEEEecCCCchhhhhh
Confidence 368888889999999999999865 5666666 5688888874 4443 333446888999999996655433
Q ss_pred eec--ccCCccchhhh-hcceeeEeecCCeeeEEEcccc---eEEEecccccCCCceEEEeec---C-----------eE
Q 016020 268 HLL--HRNKKVDFIEQ-FNEKLLVKQENENLQILDVRNA---ELMEVSRTEFMTPSAFIFLYE---N-----------QL 327 (396)
Q Consensus 268 ~~L--~~sk~i~FiE~-~~ekLLIKQed~~L~I~Dv~~~---ki~~v~~t~~~~PsAFiFly~---~-----------qL 327 (396)
+-- .+-+.|+|-+- .|=-|+...-|+.+.|++..+. ...++...|..-..+.-.-|- + ..
T Consensus 98 ~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~kr 177 (299)
T KOG1332|consen 98 HAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKR 177 (299)
T ss_pred hhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccce
Confidence 222 23344777762 3344677889999999999886 222233333333333333221 2 23
Q ss_pred EEEEEc-CeEEEEeccc---ceeeeeccccccCCC---CCCC---cEEE-ccCC--cEEEEeccCCCCCcc
Q 016020 328 FLTFRN-RTVAVWNFRG---ELVTSFEDHLLWHPD---CNTN---NIYI-TSDQ--DLIISYCKAEPEDQW 385 (396)
Q Consensus 328 FLTfs~-gti~iWd~~g---eL~t~fedh~l~~~~---c~~n---~~~i-t~~q--d~ii~~~~~~~~~~~ 385 (396)
|++--+ ++|+||.++. .+-..||+|-=|+-+ ||.+ +.+| |..| -+||=-+..+ ..+|
T Consensus 178 lvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e-~e~w 247 (299)
T KOG1332|consen 178 LVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEE-YEPW 247 (299)
T ss_pred eeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCc-cCcc
Confidence 666555 8999999999 366679999988877 7776 3333 3444 4777666643 3444
No 217
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.34 E-value=2.2 Score=44.69 Aligned_cols=141 Identities=14% Similarity=0.148 Sum_probs=91.2
Q ss_pred eCCCCcEEEeecCCCeEEEEecc-----CceEEEEeccCceEEEEEcCCeE-EEEEecCCCeeeeEEEEeecCcEEEEEE
Q 016020 194 DDVNGKVLTYSAQDSIYKVFDLK-----NYTMLYSISDKHVQEIKISPGIM-LLIFNRSSSHVPLKILSIEDGTVLKVFY 267 (396)
Q Consensus 194 Dd~NgkIlt~~a~d~~YrVwdlk-----nYs~lysIs~~~VqEIkiSpg~~-Ll~~q~~~~~iplkIl~IetG~~l~s~~ 267 (396)
=..||+++|. -.++...||..| .=..+.-=++-.+-.++-+|++= +..+.+..+.--++|||+|+++.+-+.+
T Consensus 112 ~~~dg~Litc-~~sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aK 190 (412)
T KOG3881|consen 112 KLADGTLITC-VSSGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAK 190 (412)
T ss_pred hhcCCEEEEE-ecCCcEEEEeccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeecc
Confidence 3457888885 567889999998 33344444445555566554432 2245777778889999999997776665
Q ss_pred eecccCCccchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeec--CeEEEEEEc-CeEEEEecccc
Q 016020 268 HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYE--NQLFLTFRN-RTVAVWNFRGE 344 (396)
Q Consensus 268 ~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~--~qLFLTfs~-gti~iWd~~ge 344 (396)
- .++..++ ++ .--|+.+..|++. ++-|+|..- +.+++||.+.+
T Consensus 191 N--vpnD~L~----------------------------Lr----VPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~q 236 (412)
T KOG3881|consen 191 N--VPNDRLG----------------------------LR----VPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQ 236 (412)
T ss_pred C--CCCcccc----------------------------ce----eeeeeccceecCCCCCceEEEEecceeEEEecCccc
Confidence 1 1111122 11 1236678889998 999999988 99999999996
Q ss_pred --eee--eecccccc-CCCCCCCcEEEccC
Q 016020 345 --LVT--SFEDHLLW-HPDCNTNNIYITSD 369 (396)
Q Consensus 345 --L~t--~fedh~l~-~~~c~~n~~~it~~ 369 (396)
.|. .|..+.+. .-+.|..|..+++|
T Consensus 237 RRPV~~fd~~E~~is~~~l~p~gn~Iy~gn 266 (412)
T KOG3881|consen 237 RRPVAQFDFLENPISSTGLTPSGNFIYTGN 266 (412)
T ss_pred CcceeEeccccCcceeeeecCCCcEEEEec
Confidence 343 44444433 44456655555544
No 218
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=91.28 E-value=0.99 Score=46.67 Aligned_cols=155 Identities=18% Similarity=0.183 Sum_probs=118.3
Q ss_pred CCcEEEeecCCCeEEEEec---cCce-----EEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEe-------ec
Q 016020 197 NGKVLTYSAQDSIYKVFDL---KNYT-----MLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSI-------ED 259 (396)
Q Consensus 197 NgkIlt~~a~d~~YrVwdl---knYs-----~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~I-------et 259 (396)
|||-+|.++=.-.++||-. |+++ ..+++++ -.|.-..|||++-=++.-+. +...+|||+ ||
T Consensus 239 ~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSk--DG~wriwdtdVrY~~~qD 316 (420)
T KOG2096|consen 239 DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSK--DGKWRIWDTDVRYEAGQD 316 (420)
T ss_pred CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEec--CCcEEEeeccceEecCCC
Confidence 8999999999999999974 4444 7888888 78999999999998888877 788999997 34
Q ss_pred CcEEEEEEeecccC-Cc-cchhhh-hcceeeEeecCCeeeEEEcccceEEE-ecccccCCCceEEEeecCeEEEEEEcCe
Q 016020 260 GTVLKVFYHLLHRN-KK-VDFIEQ-FNEKLLVKQENENLQILDVRNAELME-VSRTEFMTPSAFIFLYENQLFLTFRNRT 335 (396)
Q Consensus 260 G~~l~s~~~~L~~s-k~-i~FiE~-~~ekLLIKQed~~L~I~Dv~~~ki~~-v~~t~~~~PsAFiFly~~qLFLTfs~gt 335 (396)
-+.|+.+-.+|+-. .+ +. +|. =+.++|--..|..|+.|.-.+++-+. ..+.|.-+.+..-|..++...-|.-++.
T Consensus 317 pk~Lk~g~~pl~aag~~p~R-L~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcGdr~ 395 (420)
T KOG2096|consen 317 PKILKEGSAPLHAAGSEPVR-LELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCGDRY 395 (420)
T ss_pred chHhhcCCcchhhcCCCceE-EEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeeccee
Confidence 44455442233322 22 22 221 25577888899999999999988887 5567788889999999999999999998
Q ss_pred EEEEe-ccc--ceeeeeccccc
Q 016020 336 VAVWN-FRG--ELVTSFEDHLL 354 (396)
Q Consensus 336 i~iWd-~~g--eL~t~fedh~l 354 (396)
+.+.- +.| ..|.-++.|++
T Consensus 396 vrv~~ntpg~~~~V~~~~~~l~ 417 (420)
T KOG2096|consen 396 VRVIRNTPGWHSRVVKLNRELP 417 (420)
T ss_pred eeeecCCCchhhHHHHhhcccc
Confidence 88764 777 36667777664
No 219
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=91.26 E-value=8.5 Score=38.94 Aligned_cols=154 Identities=16% Similarity=0.195 Sum_probs=97.6
Q ss_pred eeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEc-CCeEEEEEecCCCeeeeEEEEeecCcEEEEEE--
Q 016020 193 FDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFY-- 267 (396)
Q Consensus 193 FDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiS-pg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~-- 267 (396)
.|+-.+-|+++. -|++.--||+++++.--+..+ +-|+.+.-. ....+ ++.. .+..++|||..|+++...+.
T Consensus 122 ldP~enSi~~Ag-GD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qi-lsG~--EDGtvRvWd~kt~k~v~~ie~y 197 (325)
T KOG0649|consen 122 LDPSENSILFAG-GDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQI-LSGA--EDGTVRVWDTKTQKHVSMIEPY 197 (325)
T ss_pred eccCCCcEEEec-CCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcce-eecC--CCccEEEEeccccceeEEeccc
Confidence 344445555544 699999999999996555555 888888773 23332 2333 36899999999999998765
Q ss_pred ---eec-ccCCc-cchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEee-cCeEEEEEE-cCeEEEEe
Q 016020 268 ---HLL-HRNKK-VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLY-ENQLFLTFR-NRTVAVWN 340 (396)
Q Consensus 268 ---~~L-~~sk~-i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly-~~qLFLTfs-~gti~iWd 340 (396)
-+| ++..+ |-=+. -+|--|+=--|.+|-+|.+++++.+.| |.-|.-..-+. +..+.|..- -+-|.=|.
T Consensus 198 k~~~~lRp~~g~wigala-~~edWlvCGgGp~lslwhLrsse~t~v----fpipa~v~~v~F~~d~vl~~G~g~~v~~~~ 272 (325)
T KOG0649|consen 198 KNPNLLRPDWGKWIGALA-VNEDWLVCGGGPKLSLWHLRSSESTCV----FPIPARVHLVDFVDDCVLIGGEGNHVQSYT 272 (325)
T ss_pred cChhhcCcccCceeEEEe-ccCceEEecCCCceeEEeccCCCceEE----EecccceeEeeeecceEEEeccccceeeee
Confidence 111 22222 33344 333444445688999999999999975 22233222221 222344444 36899999
Q ss_pred cccceee--eecccccc
Q 016020 341 FRGELVT--SFEDHLLW 355 (396)
Q Consensus 341 ~~geL~t--~fedh~l~ 355 (396)
+.|.|.+ -+|-|..+
T Consensus 273 l~Gvl~a~ip~~s~~c~ 289 (325)
T KOG0649|consen 273 LNGVLQANIPVESTACY 289 (325)
T ss_pred eccEEEEeccCCcccee
Confidence 9998776 56666654
No 220
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=90.75 E-value=3.4 Score=48.24 Aligned_cols=174 Identities=19% Similarity=0.268 Sum_probs=115.0
Q ss_pred ceeecccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc-----CceEEEEEcC---CeEEEEEecCCCee
Q 016020 179 LFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-----KHVQEIKISP---GIMLLIFNRSSSHV 250 (396)
Q Consensus 179 LF~~~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~-----~~VqEIkiSp---g~~Ll~~q~~~~~i 250 (396)
-|.+....-|--+.|-+-.--++|++- ...++|||.+..+.+=..+. ..|.++.+=+ ..+||+.. .+.
T Consensus 1058 ~~~~~n~~~pk~~~~hpf~p~i~~ad~-r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas---~dG 1133 (1387)
T KOG1517|consen 1058 KFMTGNNQPPKTLKFHPFEPQIAAADD-RERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTAS---SDG 1133 (1387)
T ss_pred HHHhcCCCCCceeeecCCCceeEEcCC-cceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeec---cCc
Confidence 455666777889999887777766433 56799999999998877665 6677777653 34444433 357
Q ss_pred eeEEEE-eecC---cEEEEEEeecccCCc--------cchhhhhcceeeEeecCCeeeEEEcccceEEE-ecccccCCCc
Q 016020 251 PLKILS-IEDG---TVLKVFYHLLHRNKK--------VDFIEQFNEKLLVKQENENLQILDVRNAELME-VSRTEFMTPS 317 (396)
Q Consensus 251 plkIl~-IetG---~~l~s~~~~L~~sk~--------i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~-v~~t~~~~Ps 317 (396)
-++||. -+++ .+|++.=.-|....+ ++ -+|...+||+.-+=..++|||..+-++.. ++-.-.-.+.
T Consensus 1134 vIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~d-WqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vT 1212 (1387)
T KOG1517|consen 1134 VIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVD-WQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVT 1212 (1387)
T ss_pred eEEEecccccccCCceeEEeeccccccCccCCCCCeeee-hhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccce
Confidence 888984 3333 445542211111111 55 45688999999999999999999876666 5444333344
Q ss_pred eEEE-eec-CeEEEEEEcCeEEEEecccc----eeeeeccccccCC
Q 016020 318 AFIF-LYE-NQLFLTFRNRTVAVWNFRGE----LVTSFEDHLLWHP 357 (396)
Q Consensus 318 AFiF-ly~-~qLFLTfs~gti~iWd~~ge----L~t~fedh~l~~~ 357 (396)
|.-. +.+ +.+-.-|.||++++||.+-. +|-.--.|.-|.+
T Consensus 1213 aLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~ 1258 (1387)
T KOG1517|consen 1213 ALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEP 1258 (1387)
T ss_pred eecccccCCceEEEeecCCceEEeecccCCccccceeecccCCccc
Confidence 4333 233 55566689999999999983 6666667776633
No 221
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.43 E-value=0.4 Score=50.03 Aligned_cols=96 Identities=14% Similarity=0.184 Sum_probs=73.8
Q ss_pred CccchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEcCeEEEEeccc----ceeeee
Q 016020 274 KKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRG----ELVTSF 349 (396)
Q Consensus 274 k~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~gti~iWd~~g----eL~t~f 349 (396)
+-+.|+. .|.+|.+.-+|+-||||+.-+-+...--..+--...-..|++++++..++.....+||+++- +.+|.+
T Consensus 148 k~vaf~~-~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNG-DGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGADSARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcC-CCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCCceEEEEeccCchhhhcCCc
Confidence 4466776 89999999999999999977765555555666778999999999999999999999999986 245556
Q ss_pred ccccccCCC--CCCC---cEEEccCC
Q 016020 350 EDHLLWHPD--CNTN---NIYITSDQ 370 (396)
Q Consensus 350 edh~l~~~~--c~~n---~~~it~~q 370 (396)
+..+....= -++| ++|+.+.|
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~ 252 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQ 252 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEec
Confidence 666665332 4555 77776654
No 222
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.37 E-value=1.6 Score=43.78 Aligned_cols=197 Identities=18% Similarity=0.232 Sum_probs=130.1
Q ss_pred ecccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCce--EEEEe--ccCceEEEEEcCCeEEEEEecCCCeeeeEEEEe
Q 016020 182 SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT--MLYSI--SDKHVQEIKISPGIMLLIFNRSSSHVPLKILSI 257 (396)
Q Consensus 182 ~~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs--~lysI--s~~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~I 257 (396)
+..-.||-| |.|||+++=|+.+.||..+|.. ++|+- -+--|-+|.+-|.=.=|+..-+.++..+.||++
T Consensus 61 qv~wahPk~-------G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~ 133 (299)
T KOG1332|consen 61 KVAWAHPKF-------GTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTY 133 (299)
T ss_pred EEeeccccc-------CcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEE
Confidence 366778887 8999999999999999999986 44444 447788899988655445555566788888888
Q ss_pred ecC-c-EEEE--EEeecccCCccchhhh-------------hcceeeEeecCCeeeEEEcccce--EEEecccccCCCce
Q 016020 258 EDG-T-VLKV--FYHLLHRNKKVDFIEQ-------------FNEKLLVKQENENLQILDVRNAE--LMEVSRTEFMTPSA 318 (396)
Q Consensus 258 etG-~-~l~s--~~~~L~~sk~i~FiE~-------------~~ekLLIKQed~~L~I~Dv~~~k--i~~v~~t~~~~PsA 318 (396)
.+. . .... +.|..+=+ .+..-|- -..+|..+--|..++||+--+++ +-++++.|.++.+-
T Consensus 134 ~~~g~w~t~ki~~aH~~Gvn-sVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRD 212 (299)
T KOG1332|consen 134 DSSGGWTTSKIVFAHEIGVN-SVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRD 212 (299)
T ss_pred cCCCCccchhhhhccccccc-eeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhh
Confidence 764 1 1111 11111110 0111111 12568888899999999998863 23368899999998
Q ss_pred EEEeecCeE----EEEEEc-CeEEEEecccc----eeeeecc------ccccCCCCCCCcEEEccCCcEEEEeccCCCCC
Q 016020 319 FIFLYENQL----FLTFRN-RTVAVWNFRGE----LVTSFED------HLLWHPDCNTNNIYITSDQDLIISYCKAEPED 383 (396)
Q Consensus 319 FiFly~~qL----FLTfs~-gti~iWd~~ge----L~t~fed------h~l~~~~c~~n~~~it~~qd~ii~~~~~~~~~ 383 (396)
.-.-|...| +.+-|- |++-||..+.| -.|.+++ |++| ..++|+.--++-|=-|-.-|.+.+.
T Consensus 213 VAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSW---S~sGn~LaVs~GdNkvtlwke~~~G 289 (299)
T KOG1332|consen 213 VAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSW---SLSGNILAVSGGDNKVTLWKENVDG 289 (299)
T ss_pred hhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEE---eccccEEEEecCCcEEEEEEeCCCC
Confidence 888776655 333333 99999999874 3344444 4444 5666666555555555556777777
Q ss_pred ccccCC
Q 016020 384 QWMEGS 389 (396)
Q Consensus 384 ~~~~~~ 389 (396)
+|.+-+
T Consensus 290 kw~~v~ 295 (299)
T KOG1332|consen 290 KWEEVG 295 (299)
T ss_pred cEEEcc
Confidence 777654
No 223
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=90.29 E-value=0.14 Score=57.60 Aligned_cols=138 Identities=17% Similarity=0.273 Sum_probs=94.5
Q ss_pred EeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEee
Q 016020 192 EFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHL 269 (396)
Q Consensus 192 EFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~ 269 (396)
-||- +|+-+.-.+.|-..|||+|.|-.+|=+..+ -++.++.+|..-.+...+ .++.-+.+|.+.+|.++.-+.
T Consensus 197 ~fDr-tg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaa--S~D~vIrvWrl~~~~pvsvLr-- 271 (1113)
T KOG0644|consen 197 IFDR-TGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAA--SNDKVIRVWRLPDGAPVSVLR-- 271 (1113)
T ss_pred eecc-ccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhc--ccCceEEEEecCCCchHHHHh--
Confidence 4777 677666678899999999999999999988 789999998554433444 347889999999999887655
Q ss_pred cccCCc---cchhhhhcceeeEeecCCeeeEEEcccceEEEecc----cccCCCceEEEeecCeEEEEEEc-CeEEEEe
Q 016020 270 LHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSR----TEFMTPSAFIFLYENQLFLTFRN-RTVAVWN 340 (396)
Q Consensus 270 L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~----t~~~~PsAFiFly~~qLFLTfs~-gti~iWd 340 (396)
.|+.- |+|.+.- .-|.|+.++|||-+=--++-+++ ++....-..+|-..+.-|+|-+. ++-..|.
T Consensus 272 -ghtgavtaiafsP~~-----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e 344 (1113)
T KOG0644|consen 272 -GHTGAVTAIAFSPRA-----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHE 344 (1113)
T ss_pred -ccccceeeeccCccc-----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccch
Confidence 66655 7888833 67999999999998222222322 23333334444444444454444 3433333
No 224
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=90.18 E-value=20 Score=35.13 Aligned_cols=144 Identities=21% Similarity=0.271 Sum_probs=73.7
Q ss_pred ceEEEEEc-CCeEEEEEecCCCeeeeEEEEeecCc-E-----EEEEEeecc--cCCc---cchhhhhcceeeEeecCCee
Q 016020 228 HVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGT-V-----LKVFYHLLH--RNKK---VDFIEQFNEKLLVKQENENL 295 (396)
Q Consensus 228 ~VqEIkiS-pg~~Ll~~q~~~~~iplkIl~IetG~-~-----l~s~~~~L~--~sk~---i~FiE~~~ekLLIKQed~~L 295 (396)
+.-.|... +|.+++...+. --|.++.+.+.+ . ...+.+-++ .++. +.+-+ -++.|++-||..|.
T Consensus 66 D~EgI~y~g~~~~vl~~Er~---~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~-~~~~L~v~kE~~P~ 141 (248)
T PF06977_consen 66 DYEGITYLGNGRYVLSEERD---QRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDP-KTNRLFVAKERKPK 141 (248)
T ss_dssp SEEEEEE-STTEEEEEETTT---TEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEET-TTTEEEEEEESSSE
T ss_pred CceeEEEECCCEEEEEEcCC---CcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcC-CCCEEEEEeCCCCh
Confidence 33344444 56666555444 245556663321 1 112332233 3332 77777 45556666899999
Q ss_pred eEEEccc---ceEEEe--------cccccCCCceEEEeecCeEEEEEEc--CeEEEEecccceee--eecc--ccccC--
Q 016020 296 QILDVRN---AELMEV--------SRTEFMTPSAFIFLYENQLFLTFRN--RTVAVWNFRGELVT--SFED--HLLWH-- 356 (396)
Q Consensus 296 ~I~Dv~~---~ki~~v--------~~t~~~~PsAFiFly~~qLFLTfs~--gti~iWd~~geL~t--~fed--h~l~~-- 356 (396)
.||-+.. +.-..+ .......||+..|-+...-++..|+ +.+-.+|.+|+.+. ++.. |-|+.
T Consensus 142 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~ 221 (248)
T PF06977_consen 142 RLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDI 221 (248)
T ss_dssp EEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS--
T ss_pred hhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCccccc
Confidence 9998875 222211 2335567999999998777777777 89999999998655 3333 22222
Q ss_pred --CC----CCCCcEEEccCCcEEEE
Q 016020 357 --PD----CNTNNIYITSDQDLIIS 375 (396)
Q Consensus 357 --~~----c~~n~~~it~~qd~ii~ 375 (396)
|. -+++++||++.-.+.-.
T Consensus 222 ~QpEGIa~d~~G~LYIvsEpNlfy~ 246 (248)
T PF06977_consen 222 PQPEGIAFDPDGNLYIVSEPNLFYR 246 (248)
T ss_dssp -SEEEEEE-TT--EEEEETTTEEEE
T ss_pred CCccEEEECCCCCEEEEcCCceEEE
Confidence 22 67899999998776543
No 225
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=89.96 E-value=1.3 Score=49.91 Aligned_cols=115 Identities=15% Similarity=0.226 Sum_probs=88.2
Q ss_pred CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCc---cchhhhhcceeeEeecCCeeeEEEcccc
Q 016020 227 KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNA 303 (396)
Q Consensus 227 ~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ 303 (396)
-.+-|+.+-|..-+.+..-- +--++||+||+||-.++|+---.+-.. ++ +...|-||..-=-|.+|-++|-.++
T Consensus 597 tTlYDm~Vdp~~k~v~t~cQ--Drnirif~i~sgKq~k~FKgs~~~eG~lIKv~-lDPSgiY~atScsdktl~~~Df~sg 673 (1080)
T KOG1408|consen 597 TTLYDMAVDPTSKLVVTVCQ--DRNIRIFDIESGKQVKSFKGSRDHEGDLIKVI-LDPSGIYLATSCSDKTLCFVDFVSG 673 (1080)
T ss_pred ceEEEeeeCCCcceEEEEec--ccceEEEeccccceeeeecccccCCCceEEEE-ECCCccEEEEeecCCceEEEEeccc
Confidence 44555666655544443333 457899999999999999932222111 44 4457888888889999999999999
Q ss_pred eEEEecccccCCCceEEEeecCeEEEEEEc-CeEEEEecccc
Q 016020 304 ELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNFRGE 344 (396)
Q Consensus 304 ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~~ge 344 (396)
||.-.--+|...+....|++|=.-..+++. |-|-||-+..+
T Consensus 674 EcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~~ 715 (1080)
T KOG1408|consen 674 ECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPLT 715 (1080)
T ss_pred hhhhhhcCcchheeeeeecccchhheeecCCceEEEEECchh
Confidence 999988899999999999999888777776 99999998764
No 226
>PRK01029 tolB translocation protein TolB; Provisional
Probab=89.16 E-value=24 Score=36.44 Aligned_cols=129 Identities=9% Similarity=-0.010 Sum_probs=72.3
Q ss_pred EEEEeccCceEEEEec--cCceEEEEEcCC--eEEE-EEecCCCeeeeEEEEeecCcEEEEEEeecccCCccchhhhhcc
Q 016020 210 YKVFDLKNYTMLYSIS--DKHVQEIKISPG--IMLL-IFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNE 284 (396)
Q Consensus 210 YrVwdlknYs~lysIs--~~~VqEIkiSpg--~~Ll-~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~i~FiE~~~e 284 (396)
+-+.|..++. .-.|+ .+....=+|||+ -..+ .....++.--+-+.++.+|+...-..+. .......|.+ +|.
T Consensus 167 l~~~d~dG~~-~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~-g~~~~p~wSP-DG~ 243 (428)
T PRK01029 167 LWSVDYDGQN-LRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQ-GNQLMPTFSP-RKK 243 (428)
T ss_pred EEEEcCCCCC-ceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCC-CCccceEECC-CCC
Confidence 3344554443 22233 355667799987 3222 2233333445777889888765443321 2233466776 888
Q ss_pred eeeEeec-----CCeeeEEEccc---ceEEEecccccCCCceEEEeecCeEEEEEE--cCeEEEEec
Q 016020 285 KLLVKQE-----NENLQILDVRN---AELMEVSRTEFMTPSAFIFLYENQLFLTFR--NRTVAVWNF 341 (396)
Q Consensus 285 kLLIKQe-----d~~L~I~Dv~~---~ki~~v~~t~~~~PsAFiFly~~qLFLTfs--~gti~iWd~ 341 (396)
+|+.-.+ +--+++||+.+ ++...+.........+..|+++++.++..+ +|...+|..
T Consensus 244 ~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~ 310 (428)
T PRK01029 244 LLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIM 310 (428)
T ss_pred EEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEE
Confidence 8887653 22345577775 344445433333445778999998544444 476777754
No 227
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=88.99 E-value=5.9 Score=46.39 Aligned_cols=103 Identities=13% Similarity=0.113 Sum_probs=73.8
Q ss_pred eeeeEEEEeecCcEEEEEEeecccCC-----ccchhhhhcceeeEeecCCeeeEEEcccc---eEEEecccccCCCceEE
Q 016020 249 HVPLKILSIEDGTVLKVFYHLLHRNK-----KVDFIEQFNEKLLVKQENENLQILDVRNA---ELMEVSRTEFMTPSAFI 320 (396)
Q Consensus 249 ~iplkIl~IetG~~l~s~~~~L~~sk-----~i~FiE~~~ekLLIKQed~~L~I~Dv~~~---ki~~v~~t~~~~PsAFi 320 (396)
+-.++|||.|.-++.++.-. ..+. ..+-. .|+-|+.+=-|+++++||.+.- -.+.+-+.|...+.-..
T Consensus 1186 ~r~IRIWDa~~E~~~~diP~--~s~t~vTaLS~~~~--~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~ 1261 (1387)
T KOG1517|consen 1186 VRSIRIWDAHKEQVVADIPY--GSSTLVTALSADLV--HGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVH 1261 (1387)
T ss_pred eeEEEEEecccceeEeeccc--CCCccceeeccccc--CCceEEEeecCCceEEeecccCCccccceeecccCCccccee
Confidence 67899999999888775431 1111 11211 3788889999999999999983 36779999988866333
Q ss_pred Ee----ecCeEEEEEEcCeEEEEeccc-ceeeeecccccc
Q 016020 321 FL----YENQLFLTFRNRTVAVWNFRG-ELVTSFEDHLLW 355 (396)
Q Consensus 321 Fl----y~~qLFLTfs~gti~iWd~~g-eL~t~fedh~l~ 355 (396)
.. ..++|+=...+|.|.+||.++ ...+-+..-..|
T Consensus 1262 ~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~ 1301 (1387)
T KOG1517|consen 1262 LSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHW 1301 (1387)
T ss_pred EEeecCCCcceeeeccCCeEEEEecccCcccccceeeecc
Confidence 22 134677777779999999999 577777777767
No 228
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=88.60 E-value=1.2 Score=48.33 Aligned_cols=216 Identities=15% Similarity=0.168 Sum_probs=135.7
Q ss_pred cccceEEEeec---cchhhhhhccccceeeeccccce-----EEEecCCCCceEEEEeeecCCCe--EEEEEeEec----
Q 016020 87 KRTKVIEIVAA---RDIVFALAHSGVCAAFSRETNRR-----ICFLNVSPDEVIRSLFYNKNNDS--LITVSVYAS---- 152 (396)
Q Consensus 87 ~RS~V~EIv~a---~dii~~L~~sG~c~af~~~t~~~-----ic~lN~s~~evIrsifyN~~n~s--lI~vSv~~s---- 152 (396)
.+|.|.-+-++ ..+++..+++|--.+||...+.+ +|.+=.++.+-+-.+++.++-.. ++++|.=.+
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 45666665555 67899999999999999888877 78888888887777777655554 777775111
Q ss_pred --CCC------------c------eeeeEeeehhhh-----------hhCCCCCC-----C----cceee--cccCCCCe
Q 016020 153 --DNF------------S------SLKCRSTKIEYI-----------RRGKPDSG-----F----ALFES--ESLKWPGF 190 (396)
Q Consensus 153 --d~~------------s------~L~cr~~~~~~i-----------~~gk~~~~-----~----~LF~~--~~l~~Pgf 190 (396)
|.+ . +..+.++..+.+ ..|++..| + .+|+. ....|+|.
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~ 400 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGP 400 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcc
Confidence 000 0 111222222211 11111110 0 12221 23344444
Q ss_pred ---EEeeCCCCcEEEeecCCCeEEEEecc-CceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEE
Q 016020 191 ---VEFDDVNGKVLTYSAQDSIYKVFDLK-NYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLK 264 (396)
Q Consensus 191 ---VEFDd~NgkIlt~~a~d~~YrVwdlk-nYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~ 264 (396)
|.+.|---++.++.. |-+.|+|..+ .++.||+... .-|.+++|||..-.++.
T Consensus 401 v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~--------------------- 458 (555)
T KOG1587|consen 401 VYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFA--------------------- 458 (555)
T ss_pred eEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEE---------------------
Confidence 355555566666666 9999999999 9999988877 44999999987754322
Q ss_pred EEEeecccCCccchhhhhcceeeEeecCCeeeEEEcccceEEEeccc-ccCCCceEEEeecCeEEEEEEc--CeEEEEec
Q 016020 265 VFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRT-EFMTPSAFIFLYENQLFLTFRN--RTVAVWNF 341 (396)
Q Consensus 265 s~~~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t-~~~~PsAFiFly~~qLFLTfs~--gti~iWd~ 341 (396)
+.-.+++|.|||++.+..--|..- ...++.--+|....+-+|+.-+ |+|.+|++
T Consensus 459 -----------------------~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l 515 (555)
T KOG1587|consen 459 -----------------------TVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKL 515 (555)
T ss_pred -----------------------EEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEc
Confidence 333678889999988665443221 1134455566667666666666 99999999
Q ss_pred ccceee
Q 016020 342 RGELVT 347 (396)
Q Consensus 342 ~geL~t 347 (396)
...|..
T Consensus 516 ~~~l~~ 521 (555)
T KOG1587|consen 516 SESLAV 521 (555)
T ss_pred Cchhhc
Confidence 865443
No 229
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=88.57 E-value=1.2 Score=26.05 Aligned_cols=33 Identities=9% Similarity=0.256 Sum_probs=24.4
Q ss_pred ecccccCCCceEEEeecCeEEEEEEc-CeEEEEe
Q 016020 308 VSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWN 340 (396)
Q Consensus 308 v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd 340 (396)
....+.....+..|.++++++++.+. |.+.+||
T Consensus 7 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 7 TLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 33455556677788887788887776 8999996
No 230
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=88.56 E-value=3.4 Score=46.13 Aligned_cols=151 Identities=9% Similarity=0.232 Sum_probs=105.3
Q ss_pred CeEEee---CCCCcEEEee-----cCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEee
Q 016020 189 GFVEFD---DVNGKVLTYS-----AQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIE 258 (396)
Q Consensus 189 gfVEFD---d~NgkIlt~~-----a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~Ie 258 (396)
||==|| ..+|.++|++ .+-+.+++|+-.+.+..+.|.. -.|..++|||+=-+|+.-.. +=..++|.++
T Consensus 525 GyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsR--DRt~sl~~~~ 602 (764)
T KOG1063|consen 525 GYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSR--DRTVSLYEVQ 602 (764)
T ss_pred ceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeec--CceEEeeeee
Confidence 554443 3368888753 3478899999999999998887 89999999977666666666 5778889987
Q ss_pred cCcEEE-EEEeecccCCc---cchhhhhcceeeEeecCCeeeEEEcccc--eEEE----ecccccCCCceEEEeecC-eE
Q 016020 259 DGTVLK-VFYHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNA--ELME----VSRTEFMTPSAFIFLYEN-QL 327 (396)
Q Consensus 259 tG~~l~-s~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~--ki~~----v~~t~~~~PsAFiFly~~-qL 327 (396)
.+.... +|...=.|++= ++|.+ ++.|....+.|+.+++|-+-.. +.++ +.-+...++-+++=+..+ +.
T Consensus 603 ~~~~~e~~fa~~k~HtRIIWdcsW~p-de~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~ 681 (764)
T KOG1063|consen 603 EDIKDEFRFACLKAHTRIIWDCSWSP-DEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKG 681 (764)
T ss_pred cccchhhhhccccccceEEEEcccCc-ccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeecccccccc
Confidence 765544 23322244433 78888 8889999999999999999887 3332 111333444444433222 22
Q ss_pred ---EEEEEcCeEEEEecc
Q 016020 328 ---FLTFRNRTVAVWNFR 342 (396)
Q Consensus 328 ---FLTfs~gti~iWd~~ 342 (396)
=+-+.+|.|.+|.+.
T Consensus 682 ~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 682 DVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred ceEEEEecccEEEEEecc
Confidence 455788999999977
No 231
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=88.43 E-value=8.4 Score=42.03 Aligned_cols=147 Identities=20% Similarity=0.294 Sum_probs=101.0
Q ss_pred eEEeeCCCCcEE---EeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEE
Q 016020 190 FVEFDDVNGKVL---TYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLK 264 (396)
Q Consensus 190 fVEFDd~NgkIl---t~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~ 264 (396)
-|.|...||-.+ .-++.+...-|||-.-...+-.++. |.|-..+|-|---=|+-.--++| +--|+.++|--.+
T Consensus 159 ~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H--~~Fw~~~~~~l~k 236 (626)
T KOG2106|consen 159 CVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGH--LYFWTLRGGSLVK 236 (626)
T ss_pred eeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCce--EEEEEccCCceEE
Confidence 345555555433 3345577788999877665544442 55555555432211111111223 4568999988777
Q ss_pred EEEeecccCCc----cchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEcCeEEEEe
Q 016020 265 VFYHLLHRNKK----VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWN 340 (396)
Q Consensus 265 s~~~~L~~sk~----i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~gti~iWd 340 (396)
.-...=.+.|+ ++|.| |.-.+.+--|++|.||+.++.++.+.--+|.--.-+..-+.++.|.=-=+||.|..||
T Consensus 237 ~~~~fek~ekk~Vl~v~F~e--ngdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd 314 (626)
T KOG2106|consen 237 RQGIFEKREKKFVLCVTFLE--NGDVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWD 314 (626)
T ss_pred EeeccccccceEEEEEEEcC--CCCEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEeecCccceEEecc
Confidence 65544466666 89999 7778899999999999999999998655888888888889999887766779999999
No 232
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=88.00 E-value=1.1 Score=29.76 Aligned_cols=36 Identities=11% Similarity=0.267 Sum_probs=28.6
Q ss_pred CcEEEEEEeecccCCc---cchhhhhcceeeEeecCCeeeEEE
Q 016020 260 GTVLKVFYHLLHRNKK---VDFIEQFNEKLLVKQENENLQILD 299 (396)
Q Consensus 260 G~~l~s~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~D 299 (396)
|+.+..+. +|+.. |.|.+ .+..|+....|+.|++||
T Consensus 1 g~~~~~~~---~h~~~i~~i~~~~-~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFR---GHSSSINSIAWSP-DGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEE---SSSSSEEEEEEET-TSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEc---CCCCcEEEEEEec-ccccceeeCCCCEEEEEC
Confidence 45566666 55555 77888 599999999999999998
No 233
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=87.45 E-value=15 Score=38.58 Aligned_cols=174 Identities=16% Similarity=0.252 Sum_probs=113.0
Q ss_pred EEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCccc
Q 016020 200 VLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVD 277 (396)
Q Consensus 200 Ilt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~i~ 277 (396)
++.+-....=||+|...+....++... .-|-|+=+|..++.++..+.. --||++..-.+..+-+..+. +.=-.|.
T Consensus 18 ~~lsvGs~~Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSSSLvaiV~~~qp--r~Lkv~~~Kk~~~ICe~~fp-t~IL~Vr 94 (391)
T KOG2110|consen 18 TLLSVGSKDGYKIFSCSPFEKCFSKDTEGVSIVEMLFSSSLVAIVSIKQP--RKLKVVHFKKKTTICEIFFP-TSILAVR 94 (391)
T ss_pred eEEEccCCCceeEEecCchHHhhcccCCCeEEEEeecccceeEEEecCCC--ceEEEEEcccCceEEEEecC-CceEEEE
Confidence 333344555699999999988887766 567899999999999988542 55888888888887765532 1111122
Q ss_pred hhhhhcc-eeeEeecCCeeeEEEcccceEEEecccccCCCceEEEee--cCeEEEEEE----cCeEEEEeccc-ceeeee
Q 016020 278 FIEQFNE-KLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLY--ENQLFLTFR----NRTVAVWNFRG-ELVTSF 349 (396)
Q Consensus 278 FiE~~~e-kLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly--~~qLFLTfs----~gti~iWd~~g-eL~t~f 349 (396)
+|- -|++==|+ .|-|||+.+=|++++-.+.-..|.....+- ..+=+|++- .|.|-+||+.- +-++.+
T Consensus 95 ----mNr~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I 169 (391)
T KOG2110|consen 95 ----MNRKRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTI 169 (391)
T ss_pred ----EccceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEE
Confidence 222 23333333 499999999999998777755666444432 222244443 48999999988 788888
Q ss_pred ccccccCC---CCCCCcEEEccC-Cc-EEEEeccCCC
Q 016020 350 EDHLLWHP---DCNTNNIYITSD-QD-LIISYCKAEP 381 (396)
Q Consensus 350 edh~l~~~---~c~~n~~~it~~-qd-~ii~~~~~~~ 381 (396)
+-|-.... .-++++..-|+. +- +|=.||-+++
T Consensus 170 ~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G 206 (391)
T KOG2110|consen 170 NAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEG 206 (391)
T ss_pred EecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCc
Confidence 88765432 266777666543 22 4445555443
No 234
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=86.66 E-value=38 Score=37.18 Aligned_cols=144 Identities=13% Similarity=0.110 Sum_probs=101.9
Q ss_pred cCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCc-cchhhhhcceeeEeecCCeeeEEEcccceEEEeccccc
Q 016020 235 SPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKK-VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEF 313 (396)
Q Consensus 235 Spg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~-i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~ 313 (396)
|.+..+++...+ ...+-++++-.|+....+.--=|...- ..-.-|.-..|+.-.-|.-+-.|+....++++.-....
T Consensus 67 s~~t~~lvlgt~--~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~ 144 (541)
T KOG4547|consen 67 SLDTSMLVLGTP--QGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQK 144 (541)
T ss_pred cCCceEEEeecC--CccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCC
Confidence 455555555554 466778888888888766521122111 22234566778888899999999999999999999999
Q ss_pred CCCceEEEeecCeEEEEEEcCeEEEEeccc-ceeeeeccccccCCC---CC-----CCcEEEccC-CcEEEEeccCCC
Q 016020 314 MTPSAFIFLYENQLFLTFRNRTVAVWNFRG-ELVTSFEDHLLWHPD---CN-----TNNIYITSD-QDLIISYCKAEP 381 (396)
Q Consensus 314 ~~PsAFiFly~~qLFLTfs~gti~iWd~~g-eL~t~fedh~l~~~~---c~-----~n~~~it~~-qd~ii~~~~~~~ 381 (396)
-.|+...-++++...++ -+|+|++||..- +++-.|++|...+.- .- .+.+++|.+ -+-+|..|+-+.
T Consensus 145 ~~~~sl~is~D~~~l~~-as~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 145 PLVSSLCISPDGKILLT-ASRQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred CccceEEEcCCCCEEEe-ccceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 99999999999665554 569999999998 899999999987543 11 134555443 345566666554
No 235
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=86.46 E-value=1.8 Score=47.86 Aligned_cols=183 Identities=18% Similarity=0.231 Sum_probs=97.6
Q ss_pred cceEEEeeccchhhhhhcccc--ceeeeccccceEE-EecCCCCceEEEEeeecCCCeEEEEEeEecCCCcee--eeEee
Q 016020 89 TKVIEIVAARDIVFALAHSGV--CAAFSRETNRRIC-FLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSL--KCRST 163 (396)
Q Consensus 89 S~V~EIv~a~dii~~L~~sG~--c~af~~~t~~~ic-~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L--~cr~~ 163 (396)
-.|.++.-|.-=-..+..+|= ...||..+++..= -+|..+.-=|+|+=+-+.|-.+.. ...-|+..| -||..
T Consensus 101 nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~---tGgRDg~illWD~R~n 177 (720)
T KOG0321|consen 101 NAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFC---TGGRDGEILLWDCRCN 177 (720)
T ss_pred ceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCccee---eccCCCcEEEEEEecc
Confidence 345566555433344556664 4457777766544 378888888888877765544433 223332322 23333
Q ss_pred e---hh------hhhh-CCCCCCC--------cceeecccCC-CCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEe
Q 016020 164 K---IE------YIRR-GKPDSGF--------ALFESESLKW-PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI 224 (396)
Q Consensus 164 ~---~~------~i~~-gk~~~~~--------~LF~~~~l~~-PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysI 224 (396)
. .| |+.. |-+-... .+.-...+.. =--|-|=| +.-++++++.|+.+|||||+.-...|.-
T Consensus 178 ~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkD-e~tlaSaga~D~~iKVWDLRk~~~~~r~ 256 (720)
T KOG0321|consen 178 GVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKD-ESTLASAGAADSTIKVWDLRKNYTAYRQ 256 (720)
T ss_pred chhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEec-cceeeeccCCCcceEEEeeccccccccc
Confidence 2 11 1111 1000001 1111111110 00233444 5678888888999999999988888875
Q ss_pred ccCceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCccchhhhhcceeeEeecCCeeeEEEcccce
Q 016020 225 SDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE 304 (396)
Q Consensus 225 s~~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~k 304 (396)
.- .++.= +|-+ ..+-.+-.++.|-+ +|.||+.-=-|.+|-.||+++-.
T Consensus 257 ep---------~~~~~---------~~t~-----skrs~G~~nL~lDs---------sGt~L~AsCtD~sIy~ynm~s~s 304 (720)
T KOG0321|consen 257 EP---------RGSDK---------YPTH-----SKRSVGQVNLILDS---------SGTYLFASCTDNSIYFYNMRSLS 304 (720)
T ss_pred CC---------CcccC---------ccCc-----ccceeeeEEEEecC---------CCCeEEEEecCCcEEEEeccccC
Confidence 51 11110 0000 11222222333333 78999999999999999999866
Q ss_pred EEE
Q 016020 305 LME 307 (396)
Q Consensus 305 i~~ 307 (396)
+.-
T Consensus 305 ~sP 307 (720)
T KOG0321|consen 305 ISP 307 (720)
T ss_pred cCc
Confidence 553
No 236
>PRK04043 tolB translocation protein TolB; Provisional
Probab=86.35 E-value=44 Score=34.61 Aligned_cols=147 Identities=9% Similarity=0.104 Sum_probs=88.1
Q ss_pred eEEeeCCCCc-EEEeecC---CCeEEEEeccCce--EEEEeccCceEEEEEcCC-eEEEEEecCCCeeeeEEEEeecCcE
Q 016020 190 FVEFDDVNGK-VLTYSAQ---DSIYKVFDLKNYT--MLYSISDKHVQEIKISPG-IMLLIFNRSSSHVPLKILSIEDGTV 262 (396)
Q Consensus 190 fVEFDd~Ngk-Ilt~~a~---d~~YrVwdlknYs--~lysIs~~~VqEIkiSpg-~~Ll~~q~~~~~iplkIl~IetG~~ 262 (396)
+..|.+ +|+ +++|.+. +..+-++|+.+.+ .|.. .......-.|||+ -.|++.......--+-++++.+|+.
T Consensus 192 ~p~wSp-DG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~ 269 (419)
T PRK04043 192 FPKWAN-KEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL 269 (419)
T ss_pred eEEECC-CCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcE
Confidence 345566 465 5666433 3567778998876 4443 2234556789965 3455544444445566778877764
Q ss_pred EEEEEeecccCCccchhhhhcceeeEeecC---CeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc------
Q 016020 263 LKVFYHLLHRNKKVDFIEQFNEKLLVKQEN---ENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN------ 333 (396)
Q Consensus 263 l~s~~~~L~~sk~i~FiE~~~ekLLIKQed---~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~------ 333 (396)
..-+... ...-...|.+ +|++|+.-.+. ..|-++|+.+++..++..... ....++++++..+..+.
T Consensus 270 ~~LT~~~-~~d~~p~~SP-DG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~---~~~~~SPDG~~Ia~~~~~~~~~~ 344 (419)
T PRK04043 270 TQITNYP-GIDVNGNFVE-DDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK---NNSSVSTYKNYIVYSSRETNNEF 344 (419)
T ss_pred EEcccCC-CccCccEECC-CCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC---cCceECCCCCEEEEEEcCCCccc
Confidence 3322211 1223467888 89999888732 257777998888877643221 12478998887554443
Q ss_pred --C--eEEEEeccc
Q 016020 334 --R--TVAVWNFRG 343 (396)
Q Consensus 334 --g--ti~iWd~~g 343 (396)
+ .|.+.|++|
T Consensus 345 ~~~~~~I~v~d~~~ 358 (419)
T PRK04043 345 GKNTFNLYLISTNS 358 (419)
T ss_pred CCCCcEEEEEECCC
Confidence 2 456667766
No 237
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=86.20 E-value=46 Score=34.62 Aligned_cols=185 Identities=12% Similarity=0.189 Sum_probs=107.1
Q ss_pred eEecCCCceeeeEeeehhh-hhhCCCCCCCcceeecccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc-
Q 016020 149 VYASDNFSSLKCRSTKIEY-IRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD- 226 (396)
Q Consensus 149 v~~sd~~s~L~cr~~~~~~-i~~gk~~~~~~LF~~~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~- 226 (396)
|...++|--.+|... .. ..+..-+.| ++-.++|-.--|.-+=..+++ -.. +.+-..|||=.-+.++-+++=
T Consensus 22 va~~~Gfriyn~~P~--ke~~~r~~~~~G--~~~veMLfR~N~laLVGGg~~--pky-~pNkviIWDD~k~~~i~el~f~ 94 (346)
T KOG2111|consen 22 VATDTGFRIYNCDPF--KESASRQFIDGG--FKIVEMLFRSNYLALVGGGSR--PKY-PPNKVIIWDDLKERCIIELSFN 94 (346)
T ss_pred EEecCceEEEecCch--hhhhhhccccCc--hhhhhHhhhhceEEEecCCCC--CCC-CCceEEEEecccCcEEEEEEec
Confidence 555666666666652 12 122222344 444455544444333332222 011 246689999666668888876
Q ss_pred CceEEEEEcCCeEEEEEecCCCeeeeEEEEee-cCcEEEEEEeecccCCc---cchhhhhcceeeE--eecCCeeeEEEc
Q 016020 227 KHVQEIKISPGIMLLIFNRSSSHVPLKILSIE-DGTVLKVFYHLLHRNKK---VDFIEQFNEKLLV--KQENENLQILDV 300 (396)
Q Consensus 227 ~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~Ie-tG~~l~s~~~~L~~sk~---i~FiE~~~ekLLI--KQed~~L~I~Dv 300 (396)
.+|..|+++++..+.+.... +.+|.-. +=+.+..+. .+.++ +..-+..+..+|. +-.-+.+||.|+
T Consensus 95 ~~I~~V~l~r~riVvvl~~~-----I~VytF~~n~k~l~~~e---t~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL 166 (346)
T KOG2111|consen 95 SEIKAVKLRRDRIVVVLENK-----IYVYTFPDNPKLLHVIE---TRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDL 166 (346)
T ss_pred cceeeEEEcCCeEEEEecCe-----EEEEEcCCChhheeeee---cccCCCceEeecCCCCceEEEcCCCccceEEEEEh
Confidence 89999999988876554433 3334333 222222222 22211 2222212222222 224588999999
Q ss_pred ccceE--EEecccccCCCceEEEeecCeEEEEEEc-C-eEEEEeccc-ceeee
Q 016020 301 RNAEL--MEVSRTEFMTPSAFIFLYENQLFLTFRN-R-TVAVWNFRG-ELVTS 348 (396)
Q Consensus 301 ~~~ki--~~v~~t~~~~PsAFiFly~~qLFLTfs~-g-ti~iWd~~g-eL~t~ 348 (396)
..-+. ..+-++|.-..+++--.-+|.+.-|.|- | .|+|||++. +++--
T Consensus 167 ~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E 219 (346)
T KOG2111|consen 167 ASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQE 219 (346)
T ss_pred hhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeee
Confidence 99877 2455688888888777788999989888 4 799999976 55443
No 238
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=85.76 E-value=0.8 Score=55.54 Aligned_cols=130 Identities=15% Similarity=0.237 Sum_probs=89.8
Q ss_pred CCeEEEEeccCceEEEEecc----------CceEEEEEcCCeEEEEEecCCCeeeeEEEEe--ecCcEEEEEEeecccCC
Q 016020 207 DSIYKVFDLKNYTMLYSISD----------KHVQEIKISPGIMLLIFNRSSSHVPLKILSI--EDGTVLKVFYHLLHRNK 274 (396)
Q Consensus 207 d~~YrVwdlknYs~lysIs~----------~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~I--etG~~l~s~~~~L~~sk 274 (396)
.+.+-+=|-.++=.+++++. +...|++|=. +.++..+......-+.+||- -.+.-+...+|+ +..-
T Consensus 2263 Gnk~~i~d~dg~l~l~q~~pk~~~s~qchnk~~~Df~Fi~-s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~-~gaT 2340 (2439)
T KOG1064|consen 2263 GNKFGIVDGDGDLSLWQASPKPYTSWQCHNKALSDFRFIG-SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHD-GGAT 2340 (2439)
T ss_pred CCceeeeccCCceeecccCCcceeccccCCccccceeeee-hhhhccccCCCCCcccchhcccCcccceeeeecC-CCce
Confidence 33344444455556666653 6677888766 66777777766666666662 223333334432 2233
Q ss_pred ccchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc-CeEEEEeccc-ceeeee
Q 016020 275 KVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNFRG-ELVTSF 349 (396)
Q Consensus 275 ~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~~g-eL~t~f 349 (396)
.+.|.+ -.+-|+.+-.++-+.+||++-+++++.=.. +.+..+|++-+. |.|+||++.+ .|.-+|
T Consensus 2341 ~l~~~P-~~qllisggr~G~v~l~D~rqrql~h~~~~----------~~~~~~f~~~ss~g~ikIw~~s~~~ll~~~ 2406 (2439)
T KOG1064|consen 2341 VLAYAP-KHQLLISGGRKGEVCLFDIRQRQLRHTFQA----------LDTREYFVTGSSEGNIKIWRLSEFGLLHTF 2406 (2439)
T ss_pred EEEEcC-cceEEEecCCcCcEEEeehHHHHHHHHhhh----------hhhhheeeccCcccceEEEEccccchhhcC
Confidence 477888 678899999999999999999999975332 668999999999 9999999998 655444
No 239
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=85.42 E-value=30 Score=31.87 Aligned_cols=146 Identities=11% Similarity=0.127 Sum_probs=93.2
Q ss_pred CCeEEeeCCCCcEEEeecCCCeEEEEeccCceEE-EEeccCceEEEEEc-CCeEEEEEecCCCeeeeEEEEeecCcEEEE
Q 016020 188 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTML-YSISDKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKV 265 (396)
Q Consensus 188 PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~l-ysIs~~~VqEIkiS-pg~~Ll~~q~~~~~iplkIl~IetG~~l~s 265 (396)
|.=+-||+.+|.....+...+.+..||..+.+.. +..++ ..-+.+. ++-.|++..... +.++|..+|+...-
T Consensus 2 ~Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~--~~G~~~~~~~g~l~v~~~~~----~~~~d~~~g~~~~~ 75 (246)
T PF08450_consen 2 GEGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG--PNGMAFDRPDGRLYVADSGG----IAVVDPDTGKVTVL 75 (246)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS--EEEEEEECTTSEEEEEETTC----EEEEETTTTEEEEE
T ss_pred CcceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC--CceEEEEccCCEEEEEEcCc----eEEEecCCCcEEEE
Confidence 3445678778888888888887777888877643 44444 6666666 444444544432 35559999977665
Q ss_pred EEe-----ecccCCccchhhhhcceeeEeecC---------CeeeEEEcccceEEEecccccCCCceEEEeecCe-EEEE
Q 016020 266 FYH-----LLHRNKKVDFIEQFNEKLLVKQEN---------ENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQ-LFLT 330 (396)
Q Consensus 266 ~~~-----~L~~sk~i~FiE~~~ekLLIKQed---------~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~q-LFLT 330 (396)
+.. .+.+-+++.+-+ .|. |++..-+ +.|-.+|.. +++..+ .+....|-...|.++++ ||++
T Consensus 76 ~~~~~~~~~~~~~ND~~vd~-~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~-~~~~~~pNGi~~s~dg~~lyv~ 151 (246)
T PF08450_consen 76 ADLPDGGVPFNRPNDVAVDP-DGN-LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVV-ADGLGFPNGIAFSPDGKTLYVA 151 (246)
T ss_dssp EEEETTCSCTEEEEEEEE-T-TS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEEE-EEEESSEEEEEEETTSSEEEEE
T ss_pred eeccCCCcccCCCceEEEcC-CCC-EEEEecCCCccccccccceEEECCC-CeEEEE-ecCcccccceEECCcchheeec
Confidence 554 234444566666 455 6666533 235555655 565554 45577899999999986 6666
Q ss_pred EEc-CeEEEEeccc
Q 016020 331 FRN-RTVAVWNFRG 343 (396)
Q Consensus 331 fs~-gti~iWd~~g 343 (396)
=+. +.|-.++.+.
T Consensus 152 ds~~~~i~~~~~~~ 165 (246)
T PF08450_consen 152 DSFNGRIWRFDLDA 165 (246)
T ss_dssp ETTTTEEEEEEEET
T ss_pred ccccceeEEEeccc
Confidence 666 7888888864
No 240
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=85.34 E-value=5 Score=43.87 Aligned_cols=162 Identities=19% Similarity=0.202 Sum_probs=110.0
Q ss_pred eEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEeccCceEEEEE---cCCeEEEEEecCCCeeee--------------
Q 016020 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKI---SPGIMLLIFNRSSSHVPL-------------- 252 (396)
Q Consensus 190 fVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~~~VqEIki---Spg~~Ll~~q~~~~~ipl-------------- 252 (396)
-|-|+- |-+...+++. ..|=-|.|.+.++.= ..|..||| +++.+|..+...+.+.+-
T Consensus 189 lIGf~t--Gqvq~idp~~--~~~sklfne~r~i~k--tsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~ 262 (636)
T KOG2394|consen 189 LIGFTT--GQVQLIDPIN--FEVSKLFNEERLINK--SSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQA 262 (636)
T ss_pred EEeecc--CceEEecchh--hHHHHhhhhcccccc--cceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccc
Confidence 344543 6666666665 222233444433322 33444444 455666655555433331
Q ss_pred ----EEEEeecCcEEEEEE------eecccCCccchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEe
Q 016020 253 ----KILSIEDGTVLKVFY------HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFL 322 (396)
Q Consensus 253 ----kIl~IetG~~l~s~~------~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFl 322 (396)
..|.|.+++--+.-+ +--..-++..|.. +|.+|..=.+|+-|+|+|-.+.+++-+-+.+|--=-+.-.+
T Consensus 263 ~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~-DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWS 341 (636)
T KOG2394|consen 263 LKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSP-DGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWS 341 (636)
T ss_pred cCCCCeeEEeeeeccccCCccceeEeccccccceeEcC-CCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEc
Confidence 134555544443311 1011223477899 99999999999999999999999999999998888888899
Q ss_pred ecCeEEEEEEc-CeEEEEeccc-ceeeeeccccccCCC
Q 016020 323 YENQLFLTFRN-RTVAVWNFRG-ELVTSFEDHLLWHPD 358 (396)
Q Consensus 323 y~~qLFLTfs~-gti~iWd~~g-eL~t~fedh~l~~~~ 358 (396)
+|+.+.+|=-. ..|.||.|.- .+|+.=++|-+|+..
T Consensus 342 PDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~ 379 (636)
T KOG2394|consen 342 PDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSV 379 (636)
T ss_pred CCccEEEecCCcceEEEEEeccceEEEeccccccceee
Confidence 99999999766 8999999988 588899999999887
No 241
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=84.86 E-value=2.5 Score=40.13 Aligned_cols=71 Identities=11% Similarity=0.076 Sum_probs=56.4
Q ss_pred CccchhhhhcceeeEeecCCeeeEEEcccceEEEec-------c-------cccCCCceEEEeecCeEEEEEEcCeEEEE
Q 016020 274 KKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVS-------R-------TEFMTPSAFIFLYENQLFLTFRNRTVAVW 339 (396)
Q Consensus 274 k~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~-------~-------t~~~~PsAFiFly~~qLFLTfs~gti~iW 339 (396)
.++-|++..+++|++=.+++.+.+||+.++++..-+ . +.......+....+|-..++++||..=.|
T Consensus 13 s~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y 92 (219)
T PF07569_consen 13 SPVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSY 92 (219)
T ss_pred CceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEe
Confidence 467889999999999999999999999999987632 1 23333444555668888999999998888
Q ss_pred ecccc
Q 016020 340 NFRGE 344 (396)
Q Consensus 340 d~~ge 344 (396)
|.+-.
T Consensus 93 ~~~L~ 97 (219)
T PF07569_consen 93 SPDLG 97 (219)
T ss_pred ccccc
Confidence 88774
No 242
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=84.58 E-value=56 Score=34.23 Aligned_cols=248 Identities=13% Similarity=0.141 Sum_probs=132.2
Q ss_pred chhhhhhccccceeeeccccceEEEecCCCCc-----eEEE-EeeecCCCeEEEEEeEecCC-----CceeeeEeeehhh
Q 016020 99 DIVFALAHSGVCAAFSRETNRRICFLNVSPDE-----VIRS-LFYNKNNDSLITVSVYASDN-----FSSLKCRSTKIEY 167 (396)
Q Consensus 99 dii~~L~~sG~c~af~~~t~~~ic~lN~s~~e-----vIrs-ifyN~~n~slI~vSv~~sd~-----~s~L~cr~~~~~~ 167 (396)
+.|++-+..|...|+|..||+.+-..+..+.. +--+ ++++ +.+++.| ...+. ...|.|--
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~---~~v~vg~-~~~~~~~~~~~g~v~alD----- 181 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVK---KLVIIGS-SGAEFFACGVRGALRAYD----- 181 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEEC---CEEEEec-cccccccCCCCcEEEEEE-----
Confidence 78888889999999999999999887766542 1112 2232 3333322 11111 12232221
Q ss_pred hhhCCCCCCCcceeeccc-----------------------CCCCeEEeeCCCCcEEEeecC-----------------C
Q 016020 168 IRRGKPDSGFALFESESL-----------------------KWPGFVEFDDVNGKVLTYSAQ-----------------D 207 (396)
Q Consensus 168 i~~gk~~~~~~LF~~~~l-----------------------~~PgfVEFDd~NgkIlt~~a~-----------------d 207 (396)
..-| ..+...... .|. -.=+|+.+|.++.-... +
T Consensus 182 ~~TG-----~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~-~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~ 255 (488)
T cd00216 182 VETG-----KLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWA-SPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYT 255 (488)
T ss_pred CCCC-----ceeeEeeccCCCcCCCCCCCCCcceecCCCCCccC-CeeEeCCCCEEEEECCCCCCCccCCccCCCCCCce
Confidence 1222 223322111 111 13456556767665432 2
Q ss_pred CeEEEEeccCceEEEEecc--CceE-----------EEE-EcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccC
Q 016020 208 SIYKVFDLKNYTMLYSISD--KHVQ-----------EIK-ISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRN 273 (396)
Q Consensus 208 ~~YrVwdlknYs~lysIs~--~~Vq-----------EIk-iSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~s 273 (396)
+.+--+|++|.+.+.+... .+.+ ++. +..+-.-+++.... .--+.-||.+||+.+-+.... .
T Consensus 256 ~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~-~G~l~ald~~tG~~~W~~~~~---~ 331 (488)
T cd00216 256 DSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPK-NGFFYVLDRTTGKLISARPEV---E 331 (488)
T ss_pred eeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECC-CceEEEEECCCCcEeeEeEee---c
Confidence 3677788888888877542 2222 111 11111112222221 234778999999999876532 1
Q ss_pred CccchhhhhcceeeE------------------eecCCeeeEEEcccceEEEecccc---------cCCCceEEEeecCe
Q 016020 274 KKVDFIEQFNEKLLV------------------KQENENLQILDVRNAELMEVSRTE---------FMTPSAFIFLYENQ 326 (396)
Q Consensus 274 k~i~FiE~~~ekLLI------------------KQed~~L~I~Dv~~~ki~~v~~t~---------~~~PsAFiFly~~q 326 (396)
..+...+ ..+++ +..+..|..+|+.+++.+=.-+.. .....+-....++-
T Consensus 332 ~~~~~~~---~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~ 408 (488)
T cd00216 332 QPMAYDP---GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNL 408 (488)
T ss_pred cccccCC---ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCe
Confidence 1111111 33444 345678999999999887643322 00111223345677
Q ss_pred EEEEEEcCeEEEEecc-cceeeeec--cccccCCC--CCCCcEEEcc
Q 016020 327 LFLTFRNRTVAVWNFR-GELVTSFE--DHLLWHPD--CNTNNIYITS 368 (396)
Q Consensus 327 LFLTfs~gti~iWd~~-geL~t~fe--dh~l~~~~--c~~n~~~it~ 368 (396)
+|+.-.+|.+-.+|.+ |+++-+++ ..+.-.|- -.++++||..
T Consensus 409 v~~g~~dG~l~ald~~tG~~lW~~~~~~~~~a~P~~~~~~g~~yv~~ 455 (488)
T cd00216 409 VFAGAADGYFRAFDATTGKELWKFRTPSGIQATPMTYEVNGKQYVGV 455 (488)
T ss_pred EEEECCCCeEEEEECCCCceeeEEECCCCceEcCEEEEeCCEEEEEE
Confidence 7887778999999974 47665443 33333333 2377888754
No 243
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=84.50 E-value=32 Score=39.27 Aligned_cols=180 Identities=12% Similarity=0.146 Sum_probs=100.9
Q ss_pred EEeeCCCCcEEE--eecCCCeEEEEeccCceEEEEecc-CceEEEEEcCCeEE---EEEecCCCeeeeEEEEeecCcEEE
Q 016020 191 VEFDDVNGKVLT--YSAQDSIYKVFDLKNYTMLYSISD-KHVQEIKISPGIML---LIFNRSSSHVPLKILSIEDGTVLK 264 (396)
Q Consensus 191 VEFDd~NgkIlt--~~a~d~~YrVwdlknYs~lysIs~-~~VqEIkiSpg~~L---l~~q~~~~~iplkIl~IetG~~l~ 264 (396)
+++++-+..+.. .+++||.++|||..+.+++..++. -.+....+.|-.+- .++-.....--+.-+.-+.++..+
T Consensus 63 ~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~ 142 (792)
T KOG1963|consen 63 VIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSS 142 (792)
T ss_pred eeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeeccccccccee
Confidence 344444443333 678999999999999999988875 33443333311110 111111111112222244455555
Q ss_pred EEEeecccCCccchhhhh--cceeeEeecC--------CeeeEEEcccceEEE-----ecccccCCCceEEEeecCeEEE
Q 016020 265 VFYHLLHRNKKVDFIEQF--NEKLLVKQEN--------ENLQILDVRNAELME-----VSRTEFMTPSAFIFLYENQLFL 329 (396)
Q Consensus 265 s~~~~L~~sk~i~FiE~~--~ekLLIKQed--------~~L~I~Dv~~~ki~~-----v~~t~~~~PsAFiFly~~qLFL 329 (396)
.+...--...+.||+-++ .+-|+.-+.+ ..+-||++.+++ .+ +...|.+...++-+.|.+....
T Consensus 143 ~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~-~~~~~~~~~~~Htf~~t~~~~spn~~~~A 221 (792)
T KOG1963|consen 143 RFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHT-KHTSSRDITVHHTFNITCVALSPNERYLA 221 (792)
T ss_pred eeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEEEecccc-eeeccchhhhhhcccceeEEeccccceEE
Confidence 544333444557777766 5666666644 467789998865 22 4455666667777777666555
Q ss_pred EEEc-CeEEEEeccc-ceeeeeccccccCCC-------CCCCcEEEccCCc
Q 016020 330 TFRN-RTVAVWNFRG-ELVTSFEDHLLWHPD-------CNTNNIYITSDQD 371 (396)
Q Consensus 330 Tfs~-gti~iWd~~g-eL~t~fedh~l~~~~-------c~~n~~~it~~qd 371 (396)
+--. |.|.+|.=-| +...---.-+=||-+ ..++.+..|+.+.
T Consensus 222 a~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E 272 (792)
T KOG1963|consen 222 AGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGRE 272 (792)
T ss_pred EeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccc
Confidence 4433 9999998777 433322233447755 4555555555443
No 244
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=84.14 E-value=1.4 Score=47.15 Aligned_cols=144 Identities=22% Similarity=0.357 Sum_probs=96.8
Q ss_pred hhhhhccccceeeeccccceEEEecCCCCceEEEEeeecCCCeEEE------EEeEecCCCceeeeEeeehh--------
Q 016020 101 VFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLIT------VSVYASDNFSSLKCRSTKIE-------- 166 (396)
Q Consensus 101 i~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~------vSv~~sd~~s~L~cr~~~~~-------- 166 (396)
+++--..|--||||-.|++++|+||.. |-||.+=|=. |+.+|- |=+|..++ .-|+|--.-++
T Consensus 144 lllgGrKGHlAa~Dw~t~~L~~Ei~v~--Etv~Dv~~LH-neq~~AVAQK~y~yvYD~~G-tElHClk~~~~v~rLeFLP 219 (545)
T KOG1272|consen 144 LLLGGRKGHLAAFDWVTKKLHFEINVM--ETVRDVTFLH-NEQFFAVAQKKYVYVYDNNG-TELHCLKRHIRVARLEFLP 219 (545)
T ss_pred EEecCCccceeeeecccceeeeeeehh--hhhhhhhhhc-chHHHHhhhhceEEEecCCC-cEEeehhhcCchhhhcccc
Confidence 445567789999999999999999974 5666653322 233321 12677777 77887432222
Q ss_pred -----------------hhhhCCC------CCCC-ccee---------------e-------------cccCCCC---eE
Q 016020 167 -----------------YIRRGKP------DSGF-ALFE---------------S-------------ESLKWPG---FV 191 (396)
Q Consensus 167 -----------------~i~~gk~------~~~~-~LF~---------------~-------------~~l~~Pg---fV 191 (396)
|+--|++ ..|. -.|. + -.|.|+| -+
T Consensus 220 yHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~si 299 (545)
T KOG1272|consen 220 YHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSI 299 (545)
T ss_pred hhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceE
Confidence 1122222 0111 0111 1 2345555 46
Q ss_pred EeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc-CceEEEEEcCCeEEEEEecCCCe
Q 016020 192 EFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-KHVQEIKISPGIMLLIFNRSSSH 249 (396)
Q Consensus 192 EFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~-~~VqEIkiSpg~~Ll~~q~~~~~ 249 (396)
.+|+ +|.-.+-...|...||||++++.++-++.- -.++.+.+|.--||.+..+++-+
T Consensus 300 Av~~-~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~SqkglLA~~~G~~v~ 357 (545)
T KOG1272|consen 300 AVDR-GGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKGLLALSYGDHVQ 357 (545)
T ss_pred EECC-CCcEEeecccccceeEeeeccccccceeecCCCccccccccccceeeecCCeee
Confidence 8888 899999999999999999999998888876 78899999999999888888533
No 245
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=84.10 E-value=26 Score=35.96 Aligned_cols=144 Identities=16% Similarity=0.085 Sum_probs=96.8
Q ss_pred cCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCc----cch
Q 016020 205 AQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKK----VDF 278 (396)
Q Consensus 205 a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~----i~F 278 (396)
+.|.+.|+++|...+.=+.+-- .++-...+||+=-++..-.....+++-=+|=+.-..+. ..++++.+ .-|
T Consensus 135 sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~---~~~a~t~D~gF~~S~ 211 (344)
T KOG4532|consen 135 SNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIEN---IYEAPTSDHGFYNSF 211 (344)
T ss_pred cCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeee---eEecccCCCceeeee
Confidence 5677777777776663332222 34667788887777777777777776555443333333 22355544 666
Q ss_pred hhhhcceeeEeecCCeeeEEEccc-----ceEEEecccccCCCceEEEeecCeE-EEEEEc--CeEEEEeccc----cee
Q 016020 279 IEQFNEKLLVKQENENLQILDVRN-----AELMEVSRTEFMTPSAFIFLYENQL-FLTFRN--RTVAVWNFRG----ELV 346 (396)
Q Consensus 279 iE~~~ekLLIKQed~~L~I~Dv~~-----~ki~~v~~t~~~~PsAFiFly~~qL-FLTfs~--gti~iWd~~g----eL~ 346 (396)
.| -++...+.--|+.+-||||++ .++....+.|.-..+.-.|.+.|-| .|-++. +.+.+-|++- |++
T Consensus 212 s~-~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I 290 (344)
T KOG4532|consen 212 SE-NDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVI 290 (344)
T ss_pred cc-CcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEE
Confidence 76 777888888899999999998 3444466667777788889866665 666666 5777777664 688
Q ss_pred eeeccc
Q 016020 347 TSFEDH 352 (396)
Q Consensus 347 t~fedh 352 (396)
.-+||.
T Consensus 291 ~i~~d~ 296 (344)
T KOG4532|consen 291 VIPDDV 296 (344)
T ss_pred ecCccc
Confidence 877776
No 246
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=83.92 E-value=2.7 Score=45.70 Aligned_cols=92 Identities=12% Similarity=0.096 Sum_probs=66.4
Q ss_pred eeeeEEEEeecC--------cEEEEEEeecccCCc---cchhhhhcceeeEeecCCeeeEEEccc----------ceEEE
Q 016020 249 HVPLKILSIEDG--------TVLKVFYHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRN----------AELME 307 (396)
Q Consensus 249 ~iplkIl~IetG--------~~l~s~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~----------~ki~~ 307 (396)
.-.||+|.+|+. +++.+|. +|..+ +...+ -++.++.+-.|++|++|++-. .-+..
T Consensus 315 d~~lk~WnLqk~~~s~~~~~epi~tfr---aH~gPVl~v~v~~-n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~ 390 (577)
T KOG0642|consen 315 DGTLKLWNLQKAKKSAEKDVEPILTFR---AHEGPVLCVVVPS-NGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSG 390 (577)
T ss_pred ccchhhhhhcccCCccccceeeeEEEe---cccCceEEEEecC-CceEEEeeccCceeeeeccCCCCCcccccCcchhcc
Confidence 356888988552 3344555 77788 66444 899999999999999994421 12333
Q ss_pred ecccccCCCceEEEeecCeEEEEEEc-CeEEEEecccc
Q 016020 308 VSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNFRGE 344 (396)
Q Consensus 308 v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~~ge 344 (396)
+.-+|++....+-++..++-.|+.|. ||+..|+-.++
T Consensus 391 ~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~ 428 (577)
T KOG0642|consen 391 TLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEE 428 (577)
T ss_pred ceeccccceeeeeecccccceeeecCCceEEeeccCCc
Confidence 45588888888887777766666654 99999998884
No 247
>PRK04043 tolB translocation protein TolB; Provisional
Probab=83.12 E-value=61 Score=33.58 Aligned_cols=142 Identities=9% Similarity=0.039 Sum_probs=80.3
Q ss_pred CcEEEeecCCC--eEEEE--eccCce-EEEEeccCceEEEEEcCCeE-EEEEecCC-CeeeeEEEEeecCcEEEEEEeec
Q 016020 198 GKVLTYSAQDS--IYKVF--DLKNYT-MLYSISDKHVQEIKISPGIM-LLIFNRSS-SHVPLKILSIEDGTVLKVFYHLL 270 (396)
Q Consensus 198 gkIlt~~a~d~--~YrVw--dlknYs-~lysIs~~~VqEIkiSpg~~-Ll~~q~~~-~~iplkIl~IetG~~l~s~~~~L 270 (396)
.||+..+...+ .+++| |...+. ..+.-++ ....-+|||+-- ++++.... ..--+-++++.+|+...-+.. -
T Consensus 155 ~r~~~v~~~~~~~~~~l~~~d~dg~~~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~-~ 232 (419)
T PRK04043 155 KRKVVFSKYTGPKKSNIVLADYTLTYQKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASS-Q 232 (419)
T ss_pred eeEEEEEEccCCCcceEEEECCCCCceeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecC-C
Confidence 35555554322 45555 333343 3333333 567889997542 33432222 234577889999987654331 0
Q ss_pred ccCCccchhhhhcceeeEee---cCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc--C--eEEEEeccc
Q 016020 271 HRNKKVDFIEQFNEKLLVKQ---ENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN--R--TVAVWNFRG 343 (396)
Q Consensus 271 ~~sk~i~FiE~~~ekLLIKQ---ed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~--g--ti~iWd~~g 343 (396)
.......|.+ .|.+|++-. .+..|-++|+.+++...+....... ..-.|+++++-++-.|+ | -|-++|++|
T Consensus 233 g~~~~~~~SP-DG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d-~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~ 310 (419)
T PRK04043 233 GMLVVSDVSK-DGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGID-VNGNFVEDDKRIVFVSDRLGYPNIFMKKLNS 310 (419)
T ss_pred CcEEeeEECC-CCCEEEEEEccCCCcEEEEEECCCCcEEEcccCCCcc-CccEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 2222366777 888887654 2345677799999888764433211 12359998865444444 3 566677776
No 248
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=82.95 E-value=1.9 Score=46.92 Aligned_cols=98 Identities=13% Similarity=0.145 Sum_probs=74.3
Q ss_pred EEeccCceEEEEEc-CCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCccchhhhhcceeeEeecCCeeeEEEc
Q 016020 222 YSISDKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDV 300 (396)
Q Consensus 222 ysIs~~~VqEIkiS-pg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv 300 (396)
+.|...-+.++.+| +|-+|+.-... .-|+||+-.+=+.+.-++.-.+---=|...+ +|.||+++-||.-+.+|.+
T Consensus 286 w~~~~g~in~f~FS~DG~~LA~VSqD---GfLRvF~fdt~eLlg~mkSYFGGLLCvcWSP-DGKyIvtGGEDDLVtVwSf 361 (636)
T KOG2394|consen 286 WHIGEGSINEFAFSPDGKYLATVSQD---GFLRIFDFDTQELLGVMKSYFGGLLCVCWSP-DGKYIVTGGEDDLVTVWSF 361 (636)
T ss_pred eEeccccccceeEcCCCceEEEEecC---ceEEEeeccHHHHHHHHHhhccceEEEEEcC-CccEEEecCCcceEEEEEe
Confidence 45555678888888 45666554444 7899999988666654432111112266677 9999999999999999999
Q ss_pred ccceEEEecccccCCCceEEEee
Q 016020 301 RNAELMEVSRTEFMTPSAFIFLY 323 (396)
Q Consensus 301 ~~~ki~~v~~t~~~~PsAFiFly 323 (396)
.-++.+.=-.+|.-|+++..|-+
T Consensus 362 ~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 362 EERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred ccceEEEeccccccceeeEeecc
Confidence 99999998899999999999963
No 249
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.94 E-value=1.7 Score=50.12 Aligned_cols=162 Identities=14% Similarity=0.165 Sum_probs=103.6
Q ss_pred ceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcceeecccCCCCeEEeeCCCC-cEEEeecC--
Q 016020 130 EVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNG-KVLTYSAQ-- 206 (396)
Q Consensus 130 evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF~~~~l~~PgfVEFDd~Ng-kIlt~~a~-- 206 (396)
|=|++|=.|+.. +=|..|+..+-. +.+=|||+.|+.-... ++..=.+=--+++.+-+. .+++++-.
T Consensus 162 ~eI~~lsWNrkv-qhILAS~s~sg~--------~~iWDlr~~~pii~ls--~~~~~~~~S~l~WhP~~aTql~~As~dd~ 230 (1049)
T KOG0307|consen 162 SEIKCLSWNRKV-SHILASGSPSGR--------AVIWDLRKKKPIIKLS--DTPGRMHCSVLAWHPDHATQLLVASGDDS 230 (1049)
T ss_pred ccceEeccchhh-hHHhhccCCCCC--------ceeccccCCCcccccc--cCCCccceeeeeeCCCCceeeeeecCCCC
Confidence 356777777543 344555543322 3345676654311100 000001011344444332 33443333
Q ss_pred CCeEEEEeccCce---EEEEeccCceEEEEEcCCe-EEEEEecCCCeeeeEEEEeecCcEEEEEEeeccc---CCccchh
Q 016020 207 DSIYKVFDLKNYT---MLYSISDKHVQEIKISPGI-MLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHR---NKKVDFI 279 (396)
Q Consensus 207 d~~YrVwdlknYs---~lysIs~~~VqEIkiSpg~-~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~---sk~i~Fi 279 (396)
.-++..|||++-+ .+|+.-...|-.+-|++-= .||++... +..+.+|+.+|||.++++- .+ -.+++|-
T Consensus 231 ~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgk--D~~ii~wN~~tgEvl~~~p---~~~nW~fdv~w~ 305 (1049)
T KOG0307|consen 231 APVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGK--DNRIICWNPNTGEVLGELP---AQGNWCFDVQWC 305 (1049)
T ss_pred CceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccC--CCCeeEecCCCceEeeecC---CCCcceeeeeec
Confidence 4589999999887 7777777999999999533 55566655 6788999999999999865 22 2359999
Q ss_pred hhhcceeeEeecCCeeeEEEcccceEEE
Q 016020 280 EQFNEKLLVKQENENLQILDVRNAELME 307 (396)
Q Consensus 280 E~~~ekLLIKQed~~L~I~Dv~~~ki~~ 307 (396)
+..-.-+-+...++.+.||.+.+.....
T Consensus 306 pr~P~~~A~asfdgkI~I~sl~~~~~~~ 333 (1049)
T KOG0307|consen 306 PRNPSVMAAASFDGKISIYSLQGTDTDL 333 (1049)
T ss_pred CCCcchhhhheeccceeeeeeecCCccc
Confidence 9888999999999999999998866433
No 250
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=82.70 E-value=2.9 Score=45.91 Aligned_cols=99 Identities=12% Similarity=0.168 Sum_probs=71.2
Q ss_pred cchhhhhcceeeEeecCCeeeEEEcccceEEE-ecccccCCCceEEEeecC--eEEEEEEc-CeEEEEeccc--------
Q 016020 276 VDFIEQFNEKLLVKQENENLQILDVRNAELME-VSRTEFMTPSAFIFLYEN--QLFLTFRN-RTVAVWNFRG-------- 343 (396)
Q Consensus 276 i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~-v~~t~~~~PsAFiFly~~--qLFLTfs~-gti~iWd~~g-------- 343 (396)
++..+ .|+.|+.+.+|..|.|||....|+++ +.-+|..-.-+.=|+|+. ++.+|-.- -.|+++|++.
T Consensus 56 LeWn~-dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~ 134 (758)
T KOG1310|consen 56 LEWNA-DGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDH 134 (758)
T ss_pred eeecC-CCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEeccccccccccc
Confidence 45555 89999999999999999999999988 666776666677778854 44555444 6999999983
Q ss_pred --c-eeeeeccccccCCC---CCCC-cEEEccCCcEEEE
Q 016020 344 --E-LVTSFEDHLLWHPD---CNTN-NIYITSDQDLIIS 375 (396)
Q Consensus 344 --e-L~t~fedh~l~~~~---c~~n-~~~it~~qd~ii~ 375 (396)
+ -...+..|.--+-. |+++ +.|.++.+|=.|-
T Consensus 135 ~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtir 173 (758)
T KOG1310|consen 135 GMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIR 173 (758)
T ss_pred CccchhhhhhhhhhhhhheecCCCCCceEEEecCCccee
Confidence 1 22244555444433 7777 8888888876553
No 251
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=82.22 E-value=59 Score=35.80 Aligned_cols=131 Identities=17% Similarity=0.316 Sum_probs=82.2
Q ss_pred cccCCCCeEEee----CCCCcEEEeecCCC-eEEEEeccCceEEEEecc-CceEEEEEcCC-eEEEEEecCCCeeeeEEE
Q 016020 183 ESLKWPGFVEFD----DVNGKVLTYSAQDS-IYKVFDLKNYTMLYSISD-KHVQEIKISPG-IMLLIFNRSSSHVPLKIL 255 (396)
Q Consensus 183 ~~l~~PgfVEFD----d~NgkIlt~~a~d~-~YrVwdlknYs~lysIs~-~~VqEIkiSpg-~~Ll~~q~~~~~iplkIl 255 (396)
..+.+||=|.+- +.++-+++ -.|+ ..-|+|+.+.+.-.-..+ -+|-.+++|++ -.+++.+- -..|.+.
T Consensus 354 iqv~~~~~VrY~r~~~~~e~~vig--t~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNd---r~el~vi 428 (668)
T COG4946 354 IQVGKKGGVRYRRIQVDPEGDVIG--TNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVAND---RFELWVI 428 (668)
T ss_pred EEcCCCCceEEEEEccCCcceEEe--ccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcC---ceEEEEE
Confidence 345566655542 22333333 3344 788999988876555555 78999999976 54555443 4889999
Q ss_pred EeecCcEEEE--------EEeecccCCc-cchhhhhcceeeEeecCCeeeEEEcccceEEE--ecccccCCCceEEEeec
Q 016020 256 SIEDGTVLKV--------FYHLLHRNKK-VDFIEQFNEKLLVKQENENLQILDVRNAELME--VSRTEFMTPSAFIFLYE 324 (396)
Q Consensus 256 ~IetG~~l~s--------~~~~L~~sk~-i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~--v~~t~~~~PsAFiFly~ 324 (396)
||+||....- +.+-.|.+.+ +.+-=. +-.+ -++|++||+.++|++. ++.++++.|+ |-++
T Consensus 429 didngnv~~idkS~~~lItdf~~~~nsr~iAYafP--~gy~----tq~Iklydm~~~Kiy~vTT~ta~DfsPa---FD~d 499 (668)
T COG4946 429 DIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFP--EGYY----TQSIKLYDMDGGKIYDVTTPTAYDFSPA---FDPD 499 (668)
T ss_pred EecCCCeeEecccccceeEEEEEcCCceeEEEecC--ccee----eeeEEEEecCCCeEEEecCCcccccCcc---cCCC
Confidence 9999998761 2233455444 332221 1111 2689999999999998 4555666664 5556
Q ss_pred CeE
Q 016020 325 NQL 327 (396)
Q Consensus 325 ~qL 327 (396)
+..
T Consensus 500 ~ry 502 (668)
T COG4946 500 GRY 502 (668)
T ss_pred CcE
Confidence 655
No 252
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=82.18 E-value=74 Score=35.11 Aligned_cols=173 Identities=12% Similarity=0.114 Sum_probs=115.0
Q ss_pred CCeEEEEeccCceEEEEe------ccCceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCc-cchh
Q 016020 207 DSIYKVFDLKNYTMLYSI------SDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKK-VDFI 279 (396)
Q Consensus 207 d~~YrVwdlknYs~lysI------s~~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~-i~Fi 279 (396)
.+++-+|++++.++...- +.+.|+++.|.++=-++.-.+. .-+.||+.-+-+..+... .|.+- -.-.
T Consensus 221 k~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviTgDS~---G~i~Iw~~~~~~~~k~~~---aH~ggv~~L~ 294 (626)
T KOG2106|consen 221 KGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVITGDSG---GNILIWSKGTNRISKQVH---AHDGGVFSLC 294 (626)
T ss_pred CceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEeecCC---ceEEEEeCCCceEEeEee---ecCCceEEEE
Confidence 789999999999976543 2388999999976655444333 556677764433333222 33333 1222
Q ss_pred hhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEcCeEEEEeccc--ceeeeeccccccCC
Q 016020 280 EQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRG--ELVTSFEDHLLWHP 357 (396)
Q Consensus 280 E~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~gti~iWd~~g--eL~t~fedh~l~~~ 357 (396)
-.-+..||.+-+|--|-.||=.=+++.++.-++.+-|---|.=-.+.+++--+.+.|.-=+++. ++++.-+...||..
T Consensus 295 ~lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgl 374 (626)
T KOG2106|consen 295 MLRDGTLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGL 374 (626)
T ss_pred EecCccEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeE
Confidence 2346788899999999999944477766543333333333443445577777777887777777 58888888999977
Q ss_pred C-CCCCcEEEccCCcEEEEeccCCCCCccc
Q 016020 358 D-CNTNNIYITSDQDLIISYCKAEPEDQWM 386 (396)
Q Consensus 358 ~-c~~n~~~it~~qd~ii~~~~~~~~~~~~ 386 (396)
- -|..+.|+|..||=-+.--+ +..-.|+
T Consensus 375 a~hps~~q~~T~gqdk~v~lW~-~~k~~wt 403 (626)
T KOG2106|consen 375 ATHPSKNQLLTCGQDKHVRLWN-DHKLEWT 403 (626)
T ss_pred EcCCChhheeeccCcceEEEcc-CCceeEE
Confidence 6 77888999999998777665 3333443
No 253
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=82.02 E-value=12 Score=39.50 Aligned_cols=142 Identities=15% Similarity=0.173 Sum_probs=71.7
Q ss_pred CCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEeccCceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEE
Q 016020 186 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKV 265 (396)
Q Consensus 186 ~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s 265 (396)
.+|..+.++| ||+-++- ..|+.|-+.......--- . ..-.++.|++.--.++.... + .++|+.=.+++..++
T Consensus 33 ~~p~~ls~np-ngr~v~V-~g~geY~iyt~~~~r~k~--~-G~g~~~vw~~~n~yAv~~~~-~--~I~I~kn~~~~~~k~ 104 (443)
T PF04053_consen 33 IYPQSLSHNP-NGRFVLV-CGDGEYEIYTALAWRNKA--F-GSGLSFVWSSRNRYAVLESS-S--TIKIYKNFKNEVVKS 104 (443)
T ss_dssp S--SEEEE-T-TSSEEEE-EETTEEEEEETTTTEEEE--E-EE-SEEEE-TSSEEEEE-TT-S---EEEEETTEE-TT--
T ss_pred cCCeeEEECC-CCCEEEE-EcCCEEEEEEccCCcccc--c-CceeEEEEecCccEEEEECC-C--eEEEEEcCccccceE
Confidence 3599999999 8988887 557888877733222111 1 22233444443333344432 2 233331112222223
Q ss_pred EEeecccCCccchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCC-CceEEEeecCeEEEEEEcCeEEEEecccc
Q 016020 266 FYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMT-PSAFIFLYENQLFLTFRNRTVAVWNFRGE 344 (396)
Q Consensus 266 ~~~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~-PsAFiFly~~qLFLTfs~gti~iWd~~ge 344 (396)
+. ++.+ --..|+..||.-..++.|.+||+.+++++.- ...+ ++..+.+.++++..-+++.+|-|++.+.+
T Consensus 105 i~--~~~~----~~~If~G~LL~~~~~~~i~~yDw~~~~~i~~---i~v~~vk~V~Ws~~g~~val~t~~~i~il~~~~~ 175 (443)
T PF04053_consen 105 IK--LPFS----VEKIFGGNLLGVKSSDFICFYDWETGKLIRR---IDVSAVKYVIWSDDGELVALVTKDSIYILKYNLE 175 (443)
T ss_dssp -----SS-----EEEEE-SSSEEEEETTEEEEE-TTT--EEEE---ESS-E-EEEEE-TTSSEEEEE-S-SEEEEEE-HH
T ss_pred Ec--CCcc----cceEEcCcEEEEECCCCEEEEEhhHcceeeE---EecCCCcEEEEECCCCEEEEEeCCeEEEEEecch
Confidence 33 1111 0123556666666777999999999988763 2233 48888899999988888899999888777
No 254
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=81.87 E-value=15 Score=38.34 Aligned_cols=72 Identities=18% Similarity=0.313 Sum_probs=54.1
Q ss_pred cchhhhhcceeeEeecCCeeeEEEcccc-------eEEE---ecc------cccCCCceEEEeecCeEEEEEEcCeEEEE
Q 016020 276 VDFIEQFNEKLLVKQENENLQILDVRNA-------ELME---VSR------TEFMTPSAFIFLYENQLFLTFRNRTVAVW 339 (396)
Q Consensus 276 i~FiE~~~ekLLIKQed~~L~I~Dv~~~-------ki~~---v~~------t~~~~PsAFiFly~~qLFLTfs~gti~iW 339 (396)
-+|-++...-++--.-.+.|++-|++-+ ++.+ -+. +.--..+-|-|++.+.+.++=+.-|++||
T Consensus 227 aeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiw 306 (460)
T COG5170 227 AEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIW 306 (460)
T ss_pred cccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEE
Confidence 4688888888888888899999999932 2221 111 11235688999999999999988999999
Q ss_pred ecccc---eee
Q 016020 340 NFRGE---LVT 347 (396)
Q Consensus 340 d~~ge---L~t 347 (396)
|.+-+ ++|
T Consensus 307 Dvnm~k~pikT 317 (460)
T COG5170 307 DVNMAKNPIKT 317 (460)
T ss_pred ecccccCCcee
Confidence 99984 555
No 255
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=80.93 E-value=27 Score=38.84 Aligned_cols=184 Identities=10% Similarity=0.177 Sum_probs=130.6
Q ss_pred EEeeCCCCcEEEeecCCCeEEEEeccCceEE--EEeccCceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEe
Q 016020 191 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTML--YSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYH 268 (396)
Q Consensus 191 VEFDd~NgkIlt~~a~d~~YrVwdlknYs~l--ysIs~~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~ 268 (396)
+-++-.|--++...+....|| ++|.-+-+| |++....+..|-+++-+.|+...... ..+--||--+....+++..
T Consensus 139 m~y~~~scDly~~gsg~evYR-lNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~--g~VEfwDpR~ksrv~~l~~ 215 (703)
T KOG2321|consen 139 MKYHKPSCDLYLVGSGSEVYR-LNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTED--GVVEFWDPRDKSRVGTLDA 215 (703)
T ss_pred ccccCCCccEEEeecCcceEE-EEccccccccccccccccceeeeecCccceEEecccC--ceEEEecchhhhhheeeec
Confidence 345566677777777788888 588888877 56666899999999999999888874 4456688777777776663
Q ss_pred ecc----cC-------CccchhhhhcceeeEeecCCeeeEEEcccceEEEecccc-cCCCceEEEeec--CeEEEEEEcC
Q 016020 269 LLH----RN-------KKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTE-FMTPSAFIFLYE--NQLFLTFRNR 334 (396)
Q Consensus 269 ~L~----~s-------k~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~-~~~PsAFiFly~--~qLFLTfs~g 334 (396)
-.+ +. .-+.|.- .|=-+-++--.+.+-|||+++++-+-+.+-. -++...+.|.+. ..-.+|.-..
T Consensus 216 ~~~v~s~pg~~~~~svTal~F~d-~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~ 294 (703)
T KOG2321|consen 216 ASSVNSHPGGDAAPSVTALKFRD-DGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKR 294 (703)
T ss_pred ccccCCCccccccCcceEEEecC-CceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEecchH
Confidence 222 00 1155555 3667889999999999999998877765544 455566777665 4567777779
Q ss_pred eEEEEecc-cceeeeeccccccCCC---CCCCcEEEccCCcEEEEecc
Q 016020 335 TVAVWNFR-GELVTSFEDHLLWHPD---CNTNNIYITSDQDLIISYCK 378 (396)
Q Consensus 335 ti~iWd~~-geL~t~fedh~l~~~~---c~~n~~~it~~qd~ii~~~~ 378 (396)
.++|||-. |...++.|--.....+ |.++-+|.+.+--.+-.|+=
T Consensus 295 ~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~~m~~yyi 342 (703)
T KOG2321|consen 295 ILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESSKMHTYYI 342 (703)
T ss_pred HhhhcccccCCceeeccccCCcCceeeecCCceEEEecCCCcceeEEc
Confidence 99999966 5788888876665555 55666666666555655543
No 256
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=80.82 E-value=2.9 Score=43.77 Aligned_cols=171 Identities=16% Similarity=0.268 Sum_probs=95.4
Q ss_pred CCcEEEeecCCCeEEE--EeccCceEEEEecc-CceEEEEEcCCeEEEEEecCCCeeeeE----EEEeecCcEEEEEEee
Q 016020 197 NGKVLTYSAQDSIYKV--FDLKNYTMLYSISD-KHVQEIKISPGIMLLIFNRSSSHVPLK----ILSIEDGTVLKVFYHL 269 (396)
Q Consensus 197 NgkIlt~~a~d~~YrV--wdlknYs~lysIs~-~~VqEIkiSpg~~Ll~~q~~~~~iplk----Il~IetG~~l~s~~~~ 269 (396)
..+++..+..+..|.+ |..--+.+.=.+-+ --+.+|.+||+-..+++.-...+|-+. .++|+ + +.
T Consensus 119 ~~sv~v~dkagD~~~~di~s~~~~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Ie------s--fc 190 (390)
T KOG3914|consen 119 DTSVLVADKAGDVYSFDILSADSGRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIE------S--FC 190 (390)
T ss_pred cceEEEEeecCCceeeeeecccccCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchh------h--hc
Confidence 3444444455444444 43222232222222 457789999887777777664443322 22332 2 34
Q ss_pred cccCCccchhhhhccee-eEeecCCeeeEEEcccceEEEecc------------cccCCCceEEEeecCeEEEE-EEcCe
Q 016020 270 LHRNKKVDFIEQFNEKL-LVKQENENLQILDVRNAELMEVSR------------TEFMTPSAFIFLYENQLFLT-FRNRT 335 (396)
Q Consensus 270 L~~sk~i~FiE~~~ekL-LIKQed~~L~I~Dv~~~ki~~v~~------------t~~~~PsAFiFly~~qLFLT-fs~gt 335 (396)
|+|.-.|-=|++.-+|+ +...-|+.|+.||+.+++...+.. .+.+.|.... .++.+.-+. .++|+
T Consensus 191 lGH~eFVS~isl~~~~~LlS~sGD~tlr~Wd~~sgk~L~t~dl~s~~~~i~~lap~~f~~~~i~-i~e~~~~~~~~~~~~ 269 (390)
T KOG3914|consen 191 LGHKEFVSTISLTDNYLLLSGSGDKTLRLWDITSGKLLDTCDLSSLVIPILPLAPPKFIPTIIA-IFESSRLVWLLCDGT 269 (390)
T ss_pred cccHhheeeeeeccCceeeecCCCCcEEEEecccCCcccccchhHhhhhccccCchhhhhhHHH-HHHhhhhhheecCCC
Confidence 67766666566666665 888899999999999999885311 1111111111 112222222 23333
Q ss_pred EEEEeccc-----ceeeeeccccccCCC---CCCCcEEEccCCcEEEEec
Q 016020 336 VAVWNFRG-----ELVTSFEDHLLWHPD---CNTNNIYITSDQDLIISYC 377 (396)
Q Consensus 336 i~iWd~~g-----eL~t~fedh~l~~~~---c~~n~~~it~~qd~ii~~~ 377 (396)
= ++.|.- .++.-+-.|..|... .-+.-|+|+...--.+.||
T Consensus 270 p-~~if~~~a~~~~~v~l~~~~qv~d~a~~et~t~~ili~~~~~~~~~l~ 318 (390)
T KOG3914|consen 270 P-VVIFGAEALPTSLVPLVSEVQVWDLALLETETDSILIDEQSAHLTKLR 318 (390)
T ss_pred e-EEEEeecCCCceeEEEEecccceeeeeeecccceeEeeccccchhhhh
Confidence 3 444433 366666666667544 6677888888888888888
No 257
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=80.51 E-value=34 Score=35.92 Aligned_cols=185 Identities=12% Similarity=0.096 Sum_probs=127.7
Q ss_pred eCCCCcEEEeecCCCeEEEEeccCceEEEEecc-------CceEEEEEcCCeEEEEEecCCCeeeeEEEEe-ecCcE--E
Q 016020 194 DDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-------KHVQEIKISPGIMLLIFNRSSSHVPLKILSI-EDGTV--L 263 (396)
Q Consensus 194 Dd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~-------~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~I-etG~~--l 263 (396)
|...--..|.++++.-+++||.-+++.=-|..+ .....+.|||+=--|+..-. --+++||+ -.|.. .
T Consensus 119 ~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGyk---rcirvFdt~RpGr~c~v 195 (406)
T KOG2919|consen 119 DQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYK---RCIRVFDTSRPGRDCPV 195 (406)
T ss_pred CCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeeccc---ceEEEeeccCCCCCCcc
Confidence 334455678889999999999999995555444 34567888854333333332 46899999 44543 2
Q ss_pred EEEEee-----cccCCccchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeE-EEEEEc-CeE
Q 016020 264 KVFYHL-----LHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQL-FLTFRN-RTV 336 (396)
Q Consensus 264 ~s~~~~-----L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qL-FLTfs~-gti 336 (396)
++.... -.--.-+.|.+-....+.+..=++.+=||.=..+...-++-+|..-..-.-|-.+++- |.-.+. ..|
T Consensus 196 y~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkI 275 (406)
T KOG2919|consen 196 YTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKI 275 (406)
T ss_pred hhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeE
Confidence 222210 0011126688866668889999999999998888888888888888888888776665 444554 899
Q ss_pred EEEeccc--ceeeeeccccccC------CCCCCCcEEEccCCcEEEEeccCCC
Q 016020 337 AVWNFRG--ELVTSFEDHLLWH------PDCNTNNIYITSDQDLIISYCKAEP 381 (396)
Q Consensus 337 ~iWd~~g--eL~t~fedh~l~~------~~c~~n~~~it~~qd~ii~~~~~~~ 381 (396)
..||.+- +.+-.+++|.-.+ ..=+++++..|.|+|=.|.-..-..
T Consensus 276 l~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~ 328 (406)
T KOG2919|consen 276 LCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKD 328 (406)
T ss_pred EEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCC
Confidence 9999987 6888888887532 1256788888888888877665544
No 258
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=80.07 E-value=36 Score=35.37 Aligned_cols=114 Identities=16% Similarity=0.191 Sum_probs=70.2
Q ss_pred EEeeCCCCcEEEeecCCCeEEEEeccCceEEEEeccCceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeec
Q 016020 191 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLL 270 (396)
Q Consensus 191 VEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L 270 (396)
|-||. -|+=+|.++.|.+++|||.+.-+-=++++ .+.|.++|++.-+.--+
T Consensus 19 Vs~D~-~GRRmAtCSsDq~vkI~d~~~~s~~W~~T----s~Wrah~~Si~rV~WAh------------------------ 69 (361)
T KOG2445|consen 19 VSFDF-YGRRMATCSSDQTVKIWDSTSDSGTWSCT----SSWRAHDGSIWRVVWAH------------------------ 69 (361)
T ss_pred eeecc-cCceeeeccCCCcEEEEeccCCCCceEEe----eeEEecCCcEEEEEecC------------------------
Confidence 56777 79999999999999999998877777777 45666776664332222
Q ss_pred ccCCccchhhhhcceeeEeecCCeeeEEEcc-----cceEEEecccccC----CCceEEEee-cCeEEE-EEEc-CeEEE
Q 016020 271 HRNKKVDFIEQFNEKLLVKQENENLQILDVR-----NAELMEVSRTEFM----TPSAFIFLY-ENQLFL-TFRN-RTVAV 338 (396)
Q Consensus 271 ~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~-----~~ki~~v~~t~~~----~PsAFiFly-~~qLFL-Tfs~-gti~i 338 (396)
+ | ||+-+..-..|..+.||-=- .....=+.++--+ ...-.=|-| .-.|.| +.+. |+++|
T Consensus 70 -P-------E-fGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRI 140 (361)
T KOG2445|consen 70 -P-------E-FGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRI 140 (361)
T ss_pred -c-------c-ccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEE
Confidence 1 2 77777777888888888641 1111112222211 122223433 445544 4444 99999
Q ss_pred Eecc
Q 016020 339 WNFR 342 (396)
Q Consensus 339 Wd~~ 342 (396)
|+.-
T Consensus 141 YEA~ 144 (361)
T KOG2445|consen 141 YEAP 144 (361)
T ss_pred EecC
Confidence 7653
No 259
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=79.17 E-value=29 Score=41.50 Aligned_cols=144 Identities=13% Similarity=0.134 Sum_probs=88.2
Q ss_pred eecCCCeEEEEeccCc-------e--EEEEeccCceEEEEEcCCeEEEEEecCCCeeeeEEEEeec--CcEEEEEEeecc
Q 016020 203 YSAQDSIYKVFDLKNY-------T--MLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIED--GTVLKVFYHLLH 271 (396)
Q Consensus 203 ~~a~d~~YrVwdlknY-------s--~lysIs~~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~Iet--G~~l~s~~~~L~ 271 (396)
..+.||++||||++-- . +-|+-.+-.+..+.++++..-+... .++.-+.+++|.- ++.+.-...+.+
T Consensus 1066 sgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~--t~DG~v~~~~id~~~~~~~~~~~~ri~ 1143 (1431)
T KOG1240|consen 1066 SGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVS--TKDGSVRVLRIDHYNVSKRVATQVRIP 1143 (1431)
T ss_pred EecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEE--cCCCeEEEEEccccccccceeeeeecc
Confidence 3445999999998632 2 6788777888888888655544444 3355566666655 444433221111
Q ss_pred cCCc-------cchhhhhcc-eeeEeecCCeeeEEEcccceEEE---ecccccCCCceEEEeecCeEEEEEEc-CeEEEE
Q 016020 272 RNKK-------VDFIEQFNE-KLLVKQENENLQILDVRNAELME---VSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVW 339 (396)
Q Consensus 272 ~sk~-------i~FiE~~~e-kLLIKQed~~L~I~Dv~~~ki~~---v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iW 339 (396)
-.++ -.|..-..+ -|+..-....+-+||+++..-.- -...| -..+.+.-.+.++-++.=.+ |.+.+|
T Consensus 1144 n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~h-G~vTSi~idp~~~WlviGts~G~l~lW 1222 (1431)
T KOG1240|consen 1144 NLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRH-GLVTSIVIDPWCNWLVIGTSRGQLVLW 1222 (1431)
T ss_pred cccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccc-cceeEEEecCCceEEEEecCCceEEEE
Confidence 1111 122222333 56667788999999999854322 22222 23466777888887777666 999999
Q ss_pred ecccc-eeeee
Q 016020 340 NFRGE-LVTSF 349 (396)
Q Consensus 340 d~~ge-L~t~f 349 (396)
|++=. ++.+.
T Consensus 1223 DLRF~~~i~sw 1233 (1431)
T KOG1240|consen 1223 DLRFRVPILSW 1233 (1431)
T ss_pred EeecCceeecc
Confidence 99974 65544
No 260
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=78.88 E-value=24 Score=38.54 Aligned_cols=162 Identities=13% Similarity=0.037 Sum_probs=104.0
Q ss_pred EEeeCCCCcEEEeecCCCeEEEEeccCceE--EEEecc------CceEEEEEcCCeEE--EEEecCCCeeeeEEEEeec-
Q 016020 191 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTM--LYSISD------KHVQEIKISPGIML--LIFNRSSSHVPLKILSIED- 259 (396)
Q Consensus 191 VEFDd~NgkIlt~~a~d~~YrVwdlknYs~--lysIs~------~~VqEIkiSpg~~L--l~~q~~~~~iplkIl~Iet- 259 (396)
++|++-..-.++-...+|.+=+||++..+. .-.+|. +-+..|.+-....= ++..+ ++..++.|++..
T Consensus 248 ~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~s--sDG~i~~W~~~~l 325 (555)
T KOG1587|consen 248 LKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLS--SDGSICSWDTDML 325 (555)
T ss_pred EEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEe--cCCcEeeeecccc
Confidence 467787888888888899999999998886 555553 55555555432111 11222 245556664433
Q ss_pred -----CcEEEEEE------eecccCCccchhhhhcceeeEeecCCeeeE-E--Ecccc-----eEEEecccccCCCceEE
Q 016020 260 -----GTVLKVFY------HLLHRNKKVDFIEQFNEKLLVKQENENLQI-L--DVRNA-----ELMEVSRTEFMTPSAFI 320 (396)
Q Consensus 260 -----G~~l~s~~------~~L~~sk~i~FiE~~~ekLLIKQed~~L~I-~--Dv~~~-----ki~~v~~t~~~~PsAFi 320 (396)
|..+.+.. ...+...-+.|.+-.....+++-|.+-|.- - +.... |...+..+|..+..+.-
T Consensus 326 ~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~ 405 (555)
T KOG1587|consen 326 SLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVS 405 (555)
T ss_pred ccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeee
Confidence 22222222 112222338888888888889988777655 2 22222 33447788899999999
Q ss_pred EeecCeE-EEEEEcCeEEEEeccc--ceeeeeccccc
Q 016020 321 FLYENQL-FLTFRNRTVAVWNFRG--ELVTSFEDHLL 354 (396)
Q Consensus 321 Fly~~qL-FLTfs~gti~iWd~~g--eL~t~fedh~l 354 (396)
|+|-..+ |+|..|.+++||.-.. -....++++.-
T Consensus 406 ~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~ 442 (555)
T KOG1587|consen 406 RNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPD 442 (555)
T ss_pred cCCCccceeeeeccceeEeccccCCCCcchhhhhccc
Confidence 9996665 6777779999999884 37778887655
No 261
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=78.53 E-value=16 Score=38.35 Aligned_cols=139 Identities=13% Similarity=0.117 Sum_probs=79.7
Q ss_pred CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCc---cchhhhhcceeeEeecCCeeeEEEcccc
Q 016020 227 KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNA 303 (396)
Q Consensus 227 ~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ 303 (396)
...++-.||=++|-.- ..+...--+-|-++|||--.. ++ .+.+ .||.. .+.-+.=+=.++.|-.+|++.+
T Consensus 212 ~~a~~CawSlni~gyh-fs~G~sqqv~L~nvetg~~qs----f~-sksDVfAlQf~~-s~nLv~~GcRngeI~~iDLR~r 284 (425)
T KOG2695|consen 212 PKAWSCAWSLNIMGYH-FSVGLSQQVLLTNVETGHQQS----FQ-SKSDVFALQFAG-SDNLVFNGCRNGEIFVIDLRCR 284 (425)
T ss_pred Ccchhhhhhhccceee-ecccccceeEEEEeecccccc----cc-cchhHHHHHhcc-cCCeeEecccCCcEEEEEeeec
Confidence 3344445554444322 233345566777888875443 11 2233 45544 4445555668999999999986
Q ss_pred eEEE-ecccccCCCceEEE---eecCeEEEEEEc--CeEEEEeccc-ce---eeeecccccc-CCC----CCCCcEEEcc
Q 016020 304 ELME-VSRTEFMTPSAFIF---LYENQLFLTFRN--RTVAVWNFRG-EL---VTSFEDHLLW-HPD----CNTNNIYITS 368 (396)
Q Consensus 304 ki~~-v~~t~~~~PsAFiF---ly~~qLFLTfs~--gti~iWd~~g-eL---~t~fedh~l~-~~~----c~~n~~~it~ 368 (396)
--=. -.......|+|..= |...+=+|..|+ |+|++||.+- .- |++.|+|.=- +++ =+++-...+.
T Consensus 285 nqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~ 364 (425)
T KOG2695|consen 285 NQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSV 364 (425)
T ss_pred ccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEc
Confidence 1000 00122233333332 333556888888 9999999998 56 8999999633 222 4555566667
Q ss_pred CCcE
Q 016020 369 DQDL 372 (396)
Q Consensus 369 ~qd~ 372 (396)
.||-
T Consensus 365 GdDc 368 (425)
T KOG2695|consen 365 GDDC 368 (425)
T ss_pred cCee
Confidence 7774
No 262
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=77.94 E-value=6.9 Score=40.26 Aligned_cols=168 Identities=14% Similarity=0.184 Sum_probs=106.0
Q ss_pred EEEecCCCCc----eEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCC-CCCCcceeecccCCCCeEEeeC
Q 016020 121 ICFLNVSPDE----VIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKP-DSGFALFESESLKWPGFVEFDD 195 (396)
Q Consensus 121 ic~lN~s~~e----vIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~-~~~~~LF~~~~l~~PgfVEFDd 195 (396)
.|.||.+... -+-|.=.|+-.-.+|.+|.- + --|-.- +|..|.. ...+-|---+.=+| =|.|-.
T Consensus 138 ~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi---D---TTCTiW---die~~~~~~vkTQLIAHDKEV~--DIaf~~ 206 (364)
T KOG0290|consen 138 QSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI---D---TTCTIW---DIETGVSGTVKTQLIAHDKEVY--DIAFLK 206 (364)
T ss_pred hhhhccCcccccCCcccccccccCCcceeEeecc---c---CeEEEE---EEeeccccceeeEEEecCccee--EEEecc
Confidence 3455554433 56777788888889987732 2 234333 4444421 11122222221111 155666
Q ss_pred CCCcEEEeecCCCeEEEEeccCce---EEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeec-CcEEEEEEee
Q 016020 196 VNGKVLTYSAQDSIYKVFDLKNYT---MLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIED-GTVLKVFYHL 269 (396)
Q Consensus 196 ~NgkIlt~~a~d~~YrVwdlknYs---~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~Iet-G~~l~s~~~~ 269 (396)
..-.+-|+-..||..|+|||+.-. -+|+=.. .-...+.+++.=.=++...+++...+-|+||-. +.++..+.
T Consensus 207 ~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~-- 284 (364)
T KOG0290|consen 207 GSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLR-- 284 (364)
T ss_pred CccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhh--
Confidence 667788999999999999999876 7787654 334444444221111223344557788899876 66666666
Q ss_pred cccCCc---cchhhhhcceeeEeecCCeeeEEEccc
Q 016020 270 LHRNKK---VDFIEQFNEKLLVKQENENLQILDVRN 302 (396)
Q Consensus 270 L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~ 302 (396)
.|... |...+.....|...-+|.-..|||+..
T Consensus 285 -~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q 319 (364)
T KOG0290|consen 285 -NHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQ 319 (364)
T ss_pred -cCcccccceEecCCCCceeeecCCcceEEEEeccc
Confidence 45444 788899999999999999999999875
No 263
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=77.38 E-value=30 Score=37.88 Aligned_cols=83 Identities=19% Similarity=0.122 Sum_probs=50.2
Q ss_pred CCCCeEEee--CCCCcEEEeecCCCeEEEEeccCce--EEEEeccCceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCc
Q 016020 186 KWPGFVEFD--DVNGKVLTYSAQDSIYKVFDLKNYT--MLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGT 261 (396)
Q Consensus 186 ~~PgfVEFD--d~NgkIlt~~a~d~~YrVwdlknYs--~lysIs~~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~ 261 (396)
+|||=|.=+ .-+-..+-+.+.|..+-+|+.+.-. ++..-....++.+.+||+.-.|+.... .+|+|+|+++|
T Consensus 100 ~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as~----~ik~~~~~~ke 175 (541)
T KOG4547|consen 100 KHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTASR----QIKVLDIETKE 175 (541)
T ss_pred CCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEeccc----eEEEEEccCce
Confidence 355544332 2233344444556666677777665 666666678888888876333333332 47888888888
Q ss_pred EEEEEEeecccCCc
Q 016020 262 VLKVFYHLLHRNKK 275 (396)
Q Consensus 262 ~l~s~~~~L~~sk~ 275 (396)
.+..|. +|..+
T Consensus 176 vv~~ft---gh~s~ 186 (541)
T KOG4547|consen 176 VVITFT---GHGSP 186 (541)
T ss_pred EEEEec---CCCcc
Confidence 888777 55555
No 264
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=76.65 E-value=1.3e+02 Score=33.32 Aligned_cols=92 Identities=10% Similarity=0.109 Sum_probs=65.4
Q ss_pred eeeEEEEeecCcEEEE--EEeecccCCc-cchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCe
Q 016020 250 VPLKILSIEDGTVLKV--FYHLLHRNKK-VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQ 326 (396)
Q Consensus 250 iplkIl~IetG~~l~s--~~~~L~~sk~-i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~q 326 (396)
+-.-++.+--++.... ..+.|+..-- +.+.+ ..++|+++=+|++|.+||..++-...+ .+ .+.|.-.-.-|++-
T Consensus 236 ~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp-~E~kLvlGC~DgSiiLyD~~~~~t~~~-ka-~~~P~~iaWHp~ga 312 (545)
T PF11768_consen 236 ADSCIYECSRNKLQRVSVTSIPLPSQVICCARSP-SEDKLVLGCEDGSIILYDTTRGVTLLA-KA-EFIPTLIAWHPDGA 312 (545)
T ss_pred eEEEEEEeecCceeEEEEEEEecCCcceEEecCc-ccceEEEEecCCeEEEEEcCCCeeeee-ee-cccceEEEEcCCCc
Confidence 4444555554433222 2233332222 66666 899999999999999999988866655 33 36777777788999
Q ss_pred EEEEEEc-CeEEEEecccc
Q 016020 327 LFLTFRN-RTVAVWNFRGE 344 (396)
Q Consensus 327 LFLTfs~-gti~iWd~~ge 344 (396)
+|++-++ |.+.+||..-.
T Consensus 313 i~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 313 IFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EEEEEcCCceEEEEEeecC
Confidence 9999999 99999999874
No 265
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=76.09 E-value=24 Score=39.10 Aligned_cols=194 Identities=16% Similarity=0.300 Sum_probs=132.4
Q ss_pred ceeeeEeeehhhhhhCCCCCCCcceeecccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceE--EEEeccCceEEEE
Q 016020 156 SSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM--LYSISDKHVQEIK 233 (396)
Q Consensus 156 s~L~cr~~~~~~i~~gk~~~~~~LF~~~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~--lysIs~~~VqEIk 233 (396)
-.=+|..- +|+-|.+-.+|+.|.+..+.||=| .... ++|-.|-=-. ..+-|++-.-+.+ ..+|.-.+|+++-
T Consensus 280 e~~~l~IW---DI~tG~lkrsF~~~~~~~~~WP~f-rWS~-DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~Fs 353 (698)
T KOG2314|consen 280 EGQQLIIW---DIATGLLKRSFPVIKSPYLKWPIF-RWSH-DDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFS 353 (698)
T ss_pred CCceEEEE---EccccchhcceeccCCCccccceE-Eecc-CCceeEEecc-ceEEEEecCceeeecccccCCccccCcc
Confidence 33444444 888899989999999999999954 5555 5676664443 4456665554332 2345558999999
Q ss_pred EcCCeEEEEEecCC-Ceee--eEEEEeecCcEEEEEEeecccCCccc-hhhhhcceeeEeec----------CCeeeEEE
Q 016020 234 ISPGIMLLIFNRSS-SHVP--LKILSIEDGTVLKVFYHLLHRNKKVD-FIEQFNEKLLVKQE----------NENLQILD 299 (396)
Q Consensus 234 iSpg~~Ll~~q~~~-~~ip--lkIl~IetG~~l~s~~~~L~~sk~i~-FiE~~~ekLLIKQe----------d~~L~I~D 299 (396)
+||+..||.+-.+. +.+| +.|+.|-+++.+.+-++ ++-.+++ |-+-.|+||-+|-+ =.||.|+-
T Consensus 354 wsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nl--fnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfr 431 (698)
T KOG2314|consen 354 WSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNL--FNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFR 431 (698)
T ss_pred cCCCcceEEEEcccccCCcceEEEEecCccceeeeccc--eeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEE
Confidence 99999998876543 4555 57899999999997662 2222222 23346777777652 24788988
Q ss_pred cccceEEEecccccCCCceEEEeecCeEEEEEEc----CeEEEEeccc-----ceeeeecc----ccccCC
Q 016020 300 VRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN----RTVAVWNFRG-----ELVTSFED----HLLWHP 357 (396)
Q Consensus 300 v~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~----gti~iWd~~g-----eL~t~fed----h~l~~~ 357 (396)
++-+.+=-..-.-..+.=+|-.=|.|.-|.+++- .++.+|-+.- .||-.|+. ++.|.|
T Consensus 432 ireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsP 502 (698)
T KOG2314|consen 432 IREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSP 502 (698)
T ss_pred eeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcC
Confidence 8887765544455566678888899999999997 5788898772 36666654 455544
No 266
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=76.08 E-value=8 Score=42.70 Aligned_cols=118 Identities=19% Similarity=0.315 Sum_probs=82.1
Q ss_pred eecccCCCCeE---EeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc---CceEEEEEcCCeE--EEEEecCCCeeee
Q 016020 181 ESESLKWPGFV---EFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD---KHVQEIKISPGIM--LLIFNRSSSHVPL 252 (396)
Q Consensus 181 ~~~~l~~PgfV---EFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~---~~VqEIkiSpg~~--Ll~~q~~~~~ipl 252 (396)
|.|--.|-|=| |... +|..|++.+.|-...|||.--|+.+-+|+- .||-.+||=|... ++++.. .+.-+
T Consensus 43 E~eL~GH~GCVN~LeWn~-dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgA--gDk~i 119 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNA-DGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGA--GDKLI 119 (758)
T ss_pred hhhhccccceecceeecC-CCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEecc--CcceE
Confidence 44555566654 5666 899999999999999999999999999998 6777888876443 223333 36889
Q ss_pred EEEEeecCcEE--------EEEE--eecccCCccchhhhhc-ceeeEeecCCeeeEEEccc
Q 016020 253 KILSIEDGTVL--------KVFY--HLLHRNKKVDFIEQFN-EKLLVKQENENLQILDVRN 302 (396)
Q Consensus 253 kIl~IetG~~l--------~s~~--~~L~~sk~i~FiE~~~-ekLLIKQed~~L~I~Dv~~ 302 (396)
++||+...++- -+.. --+.|-|+|. -++.+ .-..+..||+.|+=||++-
T Consensus 120 ~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria-~~p~~PhtfwsasEDGtirQyDiRE 179 (758)
T KOG1310|consen 120 KLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIA-TAPNGPHTFWSASEDGTIRQYDIRE 179 (758)
T ss_pred EEEecccccccccccCccchhhhhhhhhhhhhhee-cCCCCCceEEEecCCcceeeecccC
Confidence 99999862221 1111 0112334444 33455 6678889999999999986
No 267
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=75.18 E-value=32 Score=40.03 Aligned_cols=180 Identities=13% Similarity=0.120 Sum_probs=104.4
Q ss_pred EeeCCCCcEEEeecCCCeEEEEeccCceEEEEeccCceEE------EEEcCCeEEEEEecCCCeeeeEEEEee-cCcEEE
Q 016020 192 EFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQE------IKISPGIMLLIFNRSSSHVPLKILSIE-DGTVLK 264 (396)
Q Consensus 192 EFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~~~VqE------IkiSpg~~Ll~~q~~~~~iplkIl~Ie-tG~~l~ 264 (396)
++-..|.+|..-...+ ..-+||.++-..+.+|-..+..= +-+|+.-.-..+... ---+-+|... |-++.
T Consensus 94 ~l~~e~k~i~l~~~~n-s~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv--~~~iivW~~~~dn~p~- 169 (967)
T KOG0974|consen 94 KLFEENKKIALVTSRN-SLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSV--FGEIIVWKPHEDNKPI- 169 (967)
T ss_pred chhhhcceEEEEEcCc-eEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccc--cccEEEEeccccCCcc-
Confidence 3334467877766654 46788888888776665422110 111111111111111 1223333333 11111
Q ss_pred EEEeecccCCc---cchhhhhcceeeEeecCCeeeEEEcccceEEE-ecccccCCCceEEEeecCeEEEEEEc-CeEEEE
Q 016020 265 VFYHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNAELME-VSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVW 339 (396)
Q Consensus 265 s~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~-v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iW 339 (396)
. +..|-.. |.|.+ .|.||.+-++|-++++|+|.+++-.- +.=+|..-|-+-.|++. ...|.+. =|+.+|
T Consensus 170 --~-l~GHeG~iF~i~~s~-dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW 243 (967)
T KOG0974|consen 170 --R-LKGHEGSIFSIVTSL-DGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVW 243 (967)
T ss_pred --e-ecccCCceEEEEEcc-CCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEE
Confidence 1 2233333 67777 89999999999999999999987665 66667777778888888 6666666 699999
Q ss_pred ecccceeeeeccccccCCCCCCCcEEEccCCcEEEEeccCCCCCcc
Q 016020 340 NFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQW 385 (396)
Q Consensus 340 d~~geL~t~fedh~l~~~~c~~n~~~it~~qd~ii~~~~~~~~~~~ 385 (396)
+.+|...+-++.|.--+.- .+-+..++-++|..=...+.+.|
T Consensus 244 ~~~~~~l~~y~~h~g~~iw----~~~~~~~~~~~vT~g~Ds~lk~~ 285 (967)
T KOG0974|consen 244 GVNGTQLEVYDEHSGKGIW----KIAVPIGVIIKVTGGNDSTLKLW 285 (967)
T ss_pred ecccceehhhhhhhhccee----EEEEcCCceEEEeeccCcchhhh
Confidence 9999655577777643221 23334444444444333443333
No 268
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=74.72 E-value=47 Score=37.23 Aligned_cols=248 Identities=17% Similarity=0.140 Sum_probs=140.5
Q ss_pred hhhhhccccceeeeccccceEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcce
Q 016020 101 VFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALF 180 (396)
Q Consensus 101 i~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF 180 (396)
++-=..-|..+.|-..|| -|.=-..-|++|+||=+|...+.-|. +.+-..+ .|---.+==..|..|+. ..||
T Consensus 415 lasGsdDGtvriWEi~Tg--Rcvr~~~~d~~I~~vaw~P~~~~~vL--AvA~~~~-~~ivnp~~G~~~e~~~t---~ell 486 (733)
T KOG0650|consen 415 LASGSDDGTVRIWEIATG--RCVRTVQFDSEIRSVAWNPLSDLCVL--AVAVGEC-VLIVNPIFGDRLEVGPT---KELL 486 (733)
T ss_pred eeecCCCCcEEEEEeecc--eEEEEEeecceeEEEEecCCCCceeE--EEEecCc-eEEeCccccchhhhcch---hhhh
Confidence 333345577888988888 56666677889999999998776555 3333332 11111110122233221 1233
Q ss_pred eecccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEE-----EEecc-CceEEEEEc-CCeEEEEEecCCCeeeeE
Q 016020 181 ESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTML-----YSISD-KHVQEIKIS-PGIMLLIFNRSSSHVPLK 253 (396)
Q Consensus 181 ~~~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~l-----ysIs~-~~VqEIkiS-pg~~Ll~~q~~~~~iplk 253 (396)
.+.. .-+..++..--|.=..-..+ -.|+. +.|.+|-|- .|=.|.+-++....-.+-
T Consensus 487 ~~~~-----------------~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vl 549 (733)
T KOG0650|consen 487 ASAP-----------------NESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVL 549 (733)
T ss_pred hcCC-----------------CccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEE
Confidence 3221 01111222333433322211 13444 677777775 677777777776666666
Q ss_pred EEEeecCcEEEEEEeecccCCccchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecC-eEEEEEE
Q 016020 254 ILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYEN-QLFLTFR 332 (396)
Q Consensus 254 Il~IetG~~l~s~~~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~-qLFLTfs 332 (396)
|-.+..++-+-.|...=+.--.+-|-+ .--+|+|.. -.+++|||+..+++++-+.|...+.+.+--.+.| +|++.--
T Consensus 550 iHQLSK~~sQ~PF~kskG~vq~v~FHP-s~p~lfVaT-q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~ 627 (733)
T KOG0650|consen 550 IHQLSKRKSQSPFRKSKGLVQRVKFHP-SKPYLFVAT-QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSY 627 (733)
T ss_pred EEecccccccCchhhcCCceeEEEecC-CCceEEEEe-ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecC
Confidence 666666555544430000001133333 344555543 3579999999999999988998888877666644 4555555
Q ss_pred cCeEEEEecccc------------eeeeeccccccCCCCCCCcEEEccCCcEEEEeccCC
Q 016020 333 NRTVAVWNFRGE------------LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAE 380 (396)
Q Consensus 333 ~gti~iWd~~ge------------L~t~fedh~l~~~~c~~n~~~it~~qd~ii~~~~~~ 380 (396)
++.+-.+|++-. -+++-.-|--+-+.|. -+.|++++|+|-...
T Consensus 628 d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas-----~sdDgtv~Vfhg~VY 682 (733)
T KOG0650|consen 628 DKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFAS-----GSDDGTVIVFHGMVY 682 (733)
T ss_pred CCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeee-----ecCCCcEEEEeeeee
Confidence 588888888753 3556666776666653 244567777765443
No 269
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=73.26 E-value=9.7 Score=41.64 Aligned_cols=57 Identities=7% Similarity=0.236 Sum_probs=49.4
Q ss_pred eEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc-CeEEEEeccc
Q 016020 287 LVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNFRG 343 (396)
Q Consensus 287 LIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~~g 343 (396)
+..-||-.++++|..+++++.--..|....+...+.+.+-.+.+-+. |.+.+|...-
T Consensus 505 ~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~ 562 (577)
T KOG0642|consen 505 FTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDV 562 (577)
T ss_pred EecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccc
Confidence 44568999999999999999988899999999988888888777776 9999999866
No 270
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=73.11 E-value=15 Score=42.61 Aligned_cols=138 Identities=13% Similarity=0.128 Sum_probs=79.8
Q ss_pred CcEEEeecCCCeEEEEeccCce--EEEEecc--CceEEEEEc-CCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeeccc
Q 016020 198 GKVLTYSAQDSIYKVFDLKNYT--MLYSISD--KHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHR 272 (396)
Q Consensus 198 gkIlt~~a~d~~YrVwdlknYs--~lysIs~--~~VqEIkiS-pg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~ 272 (396)
.--+++.+.=+.+.||+.. +. -. .+.+ --+=.|.+| +|..+ +.-+. +-.+.||.|+|++.+.- ..+.|
T Consensus 145 ~~~i~~gsv~~~iivW~~~-~dn~p~-~l~GHeG~iF~i~~s~dg~~i-~s~Sd--DRsiRlW~i~s~~~~~~--~~fgH 217 (967)
T KOG0974|consen 145 ELYIASGSVFGEIIVWKPH-EDNKPI-RLKGHEGSIFSIVTSLDGRYI-ASVSD--DRSIRLWPIDSREVLGC--TGFGH 217 (967)
T ss_pred EEEEEeccccccEEEEecc-ccCCcc-eecccCCceEEEEEccCCcEE-EEEec--CcceeeeecccccccCc--ccccc
Confidence 3334444555666666665 11 11 1111 123344454 33333 33333 58899999999999983 33466
Q ss_pred CCc---cchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeec-CeEEEEEEc-CeEEEEeccccee
Q 016020 273 NKK---VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYE-NQLFLTFRN-RTVAVWNFRGELV 346 (396)
Q Consensus 273 sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~-~qLFLTfs~-gti~iWd~~geL~ 346 (396)
+.. +.|.+- +|...|||-.+++|++--.++. +=..|.-.---=+..+. .-+-+|-=+ +++++||..+.+.
T Consensus 218 saRvw~~~~~~n---~i~t~gedctcrvW~~~~~~l~-~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~~ 292 (967)
T KOG0974|consen 218 SARVWACCFLPN---RIITVGEDCTCRVWGVNGTQLE-VYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRGL 292 (967)
T ss_pred cceeEEEEeccc---eeEEeccceEEEEEecccceeh-hhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcccc
Confidence 666 778773 9999999999999966544444 22233222222222333 333444444 9999999988543
No 271
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=72.43 E-value=16 Score=38.56 Aligned_cols=129 Identities=15% Similarity=0.183 Sum_probs=82.8
Q ss_pred cCCCeEEEEeccCce--EEEEeccCceEEEEEcCCe--EEEEEecCCCeeeeEEEEee---------------cCcEEEE
Q 016020 205 AQDSIYKVFDLKNYT--MLYSISDKHVQEIKISPGI--MLLIFNRSSSHVPLKILSIE---------------DGTVLKV 265 (396)
Q Consensus 205 a~d~~YrVwdlknYs--~lysIs~~~VqEIkiSpg~--~Ll~~q~~~~~iplkIl~Ie---------------tG~~l~s 265 (396)
..|..+|++|-+.-. .|.+.+-.+|+.+++.|-. .|.+.=.. =+-||+.. -++.+.
T Consensus 117 ~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgCr~----gIciW~~s~tln~~r~~~~~s~~~~qvl~- 191 (445)
T KOG2139|consen 117 TNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA----GICIWSDSRTLNANRNIRMMSTHHLQVLQ- 191 (445)
T ss_pred ccCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeeecc----eeEEEEcCcccccccccccccccchhhee-
Confidence 458889998876632 6777778999999998633 22222111 12223221 122221
Q ss_pred EEeecccCCccchhh--hhcceeeEee-cCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc-CeEEEEec
Q 016020 266 FYHLLHRNKKVDFIE--QFNEKLLVKQ-ENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNF 341 (396)
Q Consensus 266 ~~~~L~~sk~i~FiE--~~~ekLLIKQ-ed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~ 341 (396)
+ +-..+|.||. .+|-.|+... .+.+|.|||+-++..+.+.+-.---.+-..|+||+..+|..+- ++..+|+.
T Consensus 192 --~--pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e 267 (445)
T KOG2139|consen 192 --D--PGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQE 267 (445)
T ss_pred --C--CCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehh
Confidence 1 1113344443 1556666666 5678999999999999877555555577899999999888776 89999954
Q ss_pred c
Q 016020 342 R 342 (396)
Q Consensus 342 ~ 342 (396)
+
T Consensus 268 ~ 268 (445)
T KOG2139|consen 268 N 268 (445)
T ss_pred c
Confidence 3
No 272
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=71.63 E-value=19 Score=37.09 Aligned_cols=80 Identities=15% Similarity=0.213 Sum_probs=56.7
Q ss_pred eeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEcCeEEEEecccceee-eec--cccccCCCC--------CCC
Q 016020 294 NLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVT-SFE--DHLLWHPDC--------NTN 362 (396)
Q Consensus 294 ~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~gti~iWd~~geL~t-~fe--dh~l~~~~c--------~~n 362 (396)
.|+||+-.-+.+-.+.=.. ..+-.+-|..+-+|.+.+++|++.+||..|+. + ++. -...-.++| .++
T Consensus 62 ~I~iys~sG~ll~~i~w~~-~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~~G 139 (410)
T PF04841_consen 62 SIQIYSSSGKLLSSIPWDS-GRIVGMGWTDDEELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYKNG 139 (410)
T ss_pred EEEEECCCCCEeEEEEECC-CCEEEEEECCCCeEEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCCCC
Confidence 4788887777666654444 56777888889999999999999999999976 2 111 122223334 378
Q ss_pred cEEEccCCcEEEE
Q 016020 363 NIYITSDQDLIIS 375 (396)
Q Consensus 363 ~~~it~~qd~ii~ 375 (396)
.+.+|++++++.-
T Consensus 140 ivvLt~~~~~~~v 152 (410)
T PF04841_consen 140 IVVLTGNNRFYVV 152 (410)
T ss_pred EEEECCCCeEEEE
Confidence 8889999997654
No 273
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=70.73 E-value=23 Score=38.89 Aligned_cols=103 Identities=11% Similarity=0.224 Sum_probs=79.5
Q ss_pred EEEeecCCCeEEEEeccCceEEEEeccCceEEEEEcC-CeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCccch
Q 016020 200 VLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDF 278 (396)
Q Consensus 200 Ilt~~a~d~~YrVwdlknYs~lysIs~~~VqEIkiSp-g~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~i~F 278 (396)
.+.|.-.=++..|||++ ...+|.+..--=-.+.++| |..+++....+...-|-|||+.+-+.+.+++ ..-+.-+++
T Consensus 286 ~VvyGfMPAkvtifnlr-~~~v~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~--a~~tt~~eW 362 (566)
T KOG2315|consen 286 AVVYGFMPAKVTIFNLR-GKPVFDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFK--AANTTVFEW 362 (566)
T ss_pred EEEEecccceEEEEcCC-CCEeEeCCCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccc--cCCceEEEE
Confidence 45666777888899886 4667777765555678886 5667777777788999999999988888887 244455888
Q ss_pred hhhhcceeeEe------ecCCeeeEEEcccceEE
Q 016020 279 IEQFNEKLLVK------QENENLQILDVRNAELM 306 (396)
Q Consensus 279 iE~~~ekLLIK------Qed~~L~I~Dv~~~ki~ 306 (396)
.| .||++|.. |.|..++||+.--+.+.
T Consensus 363 ~P-dGe~flTATTaPRlrvdNg~KiwhytG~~l~ 395 (566)
T KOG2315|consen 363 SP-DGEYFLTATTAPRLRVDNGIKIWHYTGSLLH 395 (566)
T ss_pred cC-CCcEEEEEeccccEEecCCeEEEEecCceee
Confidence 88 99999987 58999999998655444
No 274
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=70.46 E-value=1.3e+02 Score=30.59 Aligned_cols=160 Identities=13% Similarity=0.130 Sum_probs=123.2
Q ss_pred CCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc-CceEEEEEcCCe-EEEEEecCCCeeeeEEEEeecCcEE
Q 016020 186 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-KHVQEIKISPGI-MLLIFNRSSSHVPLKILSIEDGTVL 263 (396)
Q Consensus 186 ~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~-~~VqEIkiSpg~-~Ll~~q~~~~~iplkIl~IetG~~l 263 (396)
.+|.=+-.++.+.++.........+.|.|+.+++.+-++.- ..-+.+.++|.- .+.+.......-.+.++|-.+++.+
T Consensus 74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~ 153 (381)
T COG3391 74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVT 153 (381)
T ss_pred ccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEE
Confidence 67778888888899999888899999999999998888876 688889999544 7777776544577888899999998
Q ss_pred EEEEeecccCCccchhhhhcceeeEee-cCCeeeEEEcccceEEE-e---cccccCCCceEEEeecCe-EEEEEEcC---
Q 016020 264 KVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNAELME-V---SRTEFMTPSAFIFLYENQ-LFLTFRNR--- 334 (396)
Q Consensus 264 ~s~~~~L~~sk~i~FiE~~~ekLLIKQ-ed~~L~I~Dv~~~ki~~-v---~~t~~~~PsAFiFly~~q-LFLTfs~g--- 334 (396)
.+..-=..+ ..+.|.. .++++++-. .++.|.++|..+.++.+ . .-..+.-|.-..+.++++ +|++..+.
T Consensus 154 ~~~~vG~~P-~~~a~~p-~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~ 231 (381)
T COG3391 154 ATIPVGNTP-TGVAVDP-DGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSN 231 (381)
T ss_pred EEEecCCCc-ceEEECC-CCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCc
Confidence 883311112 3467666 899888888 78889999988888885 1 235566777788888887 78888774
Q ss_pred eEEEEecccceee
Q 016020 335 TVAVWNFRGELVT 347 (396)
Q Consensus 335 ti~iWd~~geL~t 347 (396)
.+..-|.....++
T Consensus 232 ~v~~id~~~~~v~ 244 (381)
T COG3391 232 NVLKIDTATGNVT 244 (381)
T ss_pred eEEEEeCCCceEE
Confidence 8999998885333
No 275
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=69.81 E-value=7.4 Score=39.51 Aligned_cols=116 Identities=15% Similarity=0.132 Sum_probs=79.7
Q ss_pred cceeecccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCce-EEEEecc-CceEEEEEcCCe-EEEEEecCCCeeeeEE
Q 016020 178 ALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT-MLYSISD-KHVQEIKISPGI-MLLIFNRSSSHVPLKI 254 (396)
Q Consensus 178 ~LF~~~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs-~lysIs~-~~VqEIkiSpg~-~Ll~~q~~~~~iplkI 254 (396)
-+|....+.+-.|+ ..|++++-.++|. ++.|++...+ ++++..+ +.|..+---|.- +++.-... ..-+.|
T Consensus 134 ~~as~~~~~~~~~i----~s~~~g~~n~~d~-~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~--dg~~~l 206 (319)
T KOG4714|consen 134 GSASRKICRHGNSI----LSGGCGNWNAQDN-FYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTD--DGIVGL 206 (319)
T ss_pred cccccceeecccEE----ecCCcceEeeccc-eeeecccccccccccccccccchhhhCCcccccEEEEecC--CCeEEE
Confidence 46666667766666 3788888888875 7789999988 6676665 444443333321 11122222 356778
Q ss_pred EEeecCcEEEEEEeecccCCc---cchhhhhcceeeEeecCCeeeEEEccc
Q 016020 255 LSIEDGTVLKVFYHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRN 302 (396)
Q Consensus 255 l~IetG~~l~s~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~ 302 (396)
||.-++ .+..-+++.|.++ |-|-+-..|+|+.-.||++|=-||--+
T Consensus 207 ~d~rn~--~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 207 WDARNV--AMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred EEcccc--cchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 888887 3444455677666 889999999999999999999999765
No 276
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=69.68 E-value=55 Score=36.45 Aligned_cols=125 Identities=18% Similarity=0.248 Sum_probs=87.3
Q ss_pred CCcEEEeecCCCeEEEEeccCceEEEEe---ccCceEEEEEcCCeE-EEEEecCC-CeeeeE------EEEeecCcEEEE
Q 016020 197 NGKVLTYSAQDSIYKVFDLKNYTMLYSI---SDKHVQEIKISPGIM-LLIFNRSS-SHVPLK------ILSIEDGTVLKV 265 (396)
Q Consensus 197 NgkIlt~~a~d~~YrVwdlknYs~lysI---s~~~VqEIkiSpg~~-Ll~~q~~~-~~iplk------Il~IetG~~l~s 265 (396)
-|.-|.....||-+|+|+-.++= -|. -++.|-+++|-|.+- ++..|..| +..||+ =|-.|||-.|.
T Consensus 115 dGtgLlt~GEDG~iKiWSrsGML--RStl~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~- 191 (737)
T KOG1524|consen 115 DGAGLLTAGEDGVIKIWSRSGML--RSTVVQNEESIRCARWAPNSNSIVFCQGGHISIKPLAANSKIIRWRAHDGLVLS- 191 (737)
T ss_pred CCceeeeecCCceEEEEeccchH--HHHHhhcCceeEEEEECCCCCceEEecCCeEEEeecccccceeEEeccCcEEEE-
Confidence 36677778899999999966543 111 126778888987654 33444443 222222 36777887765
Q ss_pred EEeecccCCccchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEcCeEE
Q 016020 266 FYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVA 337 (396)
Q Consensus 266 ~~~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~gti~ 337 (396)
++... .++-|+.+-||=..+|||---. .+-.+..|.-+..+.-|.|| +||+.-|.++.+
T Consensus 192 ----------~~W~~-~s~lI~sgGED~kfKvWD~~G~-~Lf~S~~~ey~ITSva~npd-~~~~v~S~nt~R 250 (737)
T KOG1524|consen 192 ----------LSWST-QSNIIASGGEDFRFKIWDAQGA-NLFTSAAEEYAITSVAFNPE-KDYLLWSYNTAR 250 (737)
T ss_pred ----------eecCc-cccceeecCCceeEEeecccCc-ccccCChhccceeeeeeccc-cceeeeeeeeee
Confidence 23333 6778899999999999996544 44467778888888999999 999988877766
No 277
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=69.49 E-value=22 Score=31.39 Aligned_cols=58 Identities=19% Similarity=0.252 Sum_probs=46.9
Q ss_pred ceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEcCeEEEEecccc
Q 016020 284 EKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGE 344 (396)
Q Consensus 284 ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~gti~iWd~~ge 344 (396)
..||++.+|--|+||+=. --+.++ ++...|..+.-+.+++.-..+.||||-+|+-.-.
T Consensus 16 ~eLlvGs~D~~IRvf~~~-e~~~Ei--~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~R 73 (111)
T PF14783_consen 16 NELLVGSDDFEIRVFKGD-EIVAEI--TETDKVTSLCSLGGGRFAYALANGTVGVYDRSQR 73 (111)
T ss_pred ceEEEecCCcEEEEEeCC-cEEEEE--ecccceEEEEEcCCCEEEEEecCCEEEEEeCcce
Confidence 579999999999999744 334445 6667888999999999888999999999986443
No 278
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=68.54 E-value=1.8e+02 Score=32.97 Aligned_cols=153 Identities=16% Similarity=0.319 Sum_probs=96.2
Q ss_pred EEeeCCCCcEEEeecCCCeEEEEeccC--------------ceEEEEeccCceEEEE--EcCCeEEEEEecCCCeeeeEE
Q 016020 191 VEFDDVNGKVLTYSAQDSIYKVFDLKN--------------YTMLYSISDKHVQEIK--ISPGIMLLIFNRSSSHVPLKI 254 (396)
Q Consensus 191 VEFDd~NgkIlt~~a~d~~YrVwdlkn--------------Ys~lysIs~~~VqEIk--iSpg~~Ll~~q~~~~~iplkI 254 (396)
|+|.. +|+.+.--.+.|.+.+||... ..-+|+ .-|.+.. -..+.|+.+.+..++....|+
T Consensus 135 Ik~~~-~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys---~fv~~~~~~~~~~~ll~v~~~~~~k~~ykL 210 (670)
T PF10395_consen 135 IKFSS-DGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYS---KFVNDFELENGKDLLLTVSQLSNSKLSYKL 210 (670)
T ss_pred EEEec-CCCEEEEEEcCCcEEEEeccccccccccccccccccceehh---hhhcccccccCCceEEEEEEcCCCcEEEEE
Confidence 56773 677777778889999998811 223343 4455555 346777777776777899999
Q ss_pred EEe-ecCcEEEEEE---eecccCCccchhhhhcceeeEeecCCeeeEEEcccceEEE-ecccccCC-----CceEEEeec
Q 016020 255 LSI-EDGTVLKVFY---HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELME-VSRTEFMT-----PSAFIFLYE 324 (396)
Q Consensus 255 l~I-etG~~l~s~~---~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~-v~~t~~~~-----PsAFiFly~ 324 (396)
+.| -++....++. +-...-....|-=|+|.-.-. .+..|-+|++-+-++.+ +.-..... +-++.-...
T Consensus 211 ~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~~~s~ 288 (670)
T PF10395_consen 211 ISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLKPPSP 288 (670)
T ss_pred EEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCceEEEEEEechhhccccccceEeecCCC
Confidence 999 3344444443 222233445565555543322 88899999998866655 22222222 224444445
Q ss_pred CeEEEEEEcCeEEEEecccc-eeeeec
Q 016020 325 NQLFLTFRNRTVAVWNFRGE-LVTSFE 350 (396)
Q Consensus 325 ~qLFLTfs~gti~iWd~~ge-L~t~fe 350 (396)
+.+.|| .+++|-+.|+..+ ++..|+
T Consensus 289 nRvLLs-~~nkIyLld~~~~siLse~~ 314 (670)
T PF10395_consen 289 NRVLLS-VNNKIYLLDLKFESILSEFE 314 (670)
T ss_pred CeEEEE-cCCEEEEEeehhhhhhhhhh
Confidence 555555 4679999999995 888998
No 279
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=67.65 E-value=89 Score=35.26 Aligned_cols=122 Identities=17% Similarity=0.324 Sum_probs=78.1
Q ss_pred cCceEEEEEc-CCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCcc---chhhhhc-----ceeeEeec----C
Q 016020 226 DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKV---DFIEQFN-----EKLLVKQE----N 292 (396)
Q Consensus 226 ~~~VqEIkiS-pg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~i---~FiE~~~-----ekLLIKQe----d 292 (396)
++.|..||++ ++-.+++-... .-+.+++.+.+.....-...+.++..+ .|++-+. ++|++=.. .
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~n---G~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k 205 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLEN---GSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSK 205 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcC---CcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCc
Confidence 5788889998 55555454444 456777774444333222223333333 3444333 55554332 2
Q ss_pred CeeeEEEc--ccceEEEec--ccccCCCceEEEeecCeEEEEEEcCeEEEEeccc-ceeeeec
Q 016020 293 ENLQILDV--RNAELMEVS--RTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRG-ELVTSFE 350 (396)
Q Consensus 293 ~~L~I~Dv--~~~ki~~v~--~t~~~~PsAFiFly~~qLFLTfs~gti~iWd~~g-eL~t~fe 350 (396)
-..+.+.+ .+..+.++. ..+.+.+..-.|-|..+-..-+++++|.+|+.-. +++.+++
T Consensus 206 ~~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l~~~~i~~ysip~f~~~~tI~ 268 (670)
T PF10395_consen 206 LSYKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQLSKKTISSYSIPNFQIQKTIS 268 (670)
T ss_pred EEEEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEEeCCEEEEEEcCCceEEEEEE
Confidence 46788888 778899987 6777788888888876666677999999999966 7666554
No 280
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=67.65 E-value=8.9 Score=43.28 Aligned_cols=68 Identities=15% Similarity=0.271 Sum_probs=58.6
Q ss_pred ccchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc-CeEEEEecccc
Q 016020 275 KVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNFRGE 344 (396)
Q Consensus 275 ~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~~ge 344 (396)
.+.|-+ +|+.|+... |..|.|||.-.|.++.++++|.+++.+.-+..++++|-+=+. ..|-+|+-+.|
T Consensus 17 d~afkP-DGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klE 85 (1081)
T KOG1538|consen 17 DIAFKP-DGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLE 85 (1081)
T ss_pred eeEECC-CCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccccc
Confidence 466766 888887765 678999999999999999999999999999999999998766 68999986654
No 281
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=67.43 E-value=7.7 Score=39.48 Aligned_cols=59 Identities=17% Similarity=0.312 Sum_probs=47.9
Q ss_pred CCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEe
Q 016020 197 NGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSI 257 (396)
Q Consensus 197 NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~I 257 (396)
.+||+|.-.=|+-+|||+.++...|=.+.- ..|+++.+||+.-||...+. +--+.+|++
T Consensus 262 D~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaask--D~rISLWkL 322 (323)
T KOG0322|consen 262 DGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASK--DARISLWKL 322 (323)
T ss_pred CCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccC--CceEEeeec
Confidence 489999888899999999999997765544 89999999999888777776 555566653
No 282
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=66.83 E-value=2.1e+02 Score=31.71 Aligned_cols=173 Identities=13% Similarity=0.173 Sum_probs=99.0
Q ss_pred eeCC-CCcEEEeecC-----CCeEEEEeccCceEEEEeccCceEEEEEc----CCeEE-EEEecC---CCee---eeEEE
Q 016020 193 FDDV-NGKVLTYSAQ-----DSIYKVFDLKNYTMLYSISDKHVQEIKIS----PGIML-LIFNRS---SSHV---PLKIL 255 (396)
Q Consensus 193 FDd~-NgkIlt~~a~-----d~~YrVwdlknYs~lysIs~~~VqEIkiS----pg~~L-l~~q~~---~~~i---plkIl 255 (396)
+++. |+..+||-.. .+..++|.+---+-|.+-+=..++.+++- ....| +++-.. +++. -|-||
T Consensus 181 isP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~ 260 (561)
T COG5354 181 ISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLL 260 (561)
T ss_pred ecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEE
Confidence 3444 6777776654 67888888876555544444444444432 22222 222222 2332 57788
Q ss_pred EeecCcEEEEEEeecccCCccchhhhhcceeeEe-ecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEE--EE
Q 016020 256 SIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLT--FR 332 (396)
Q Consensus 256 ~IetG~~l~s~~~~L~~sk~i~FiE~~~ekLLIK-Qed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLT--fs 332 (396)
+|+---.=++.. +-.+=-+..|-+..++.-.|- --...+.++|++.+-..-.+.+-.+++ +|++.....|+ |-
T Consensus 261 ~~~e~~i~V~~~-~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl~~~~Pe~~rNT~---~fsp~~r~il~agF~ 336 (561)
T COG5354 261 RITERSIPVEKD-LKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNLRFYFPEQKRNTI---FFSPHERYILFAGFD 336 (561)
T ss_pred eecccccceecc-ccccceeeeecccCCceeEEecccccceeecccccceEEecCCcccccc---cccCcccEEEEecCC
Confidence 887211111100 001111234444444444444 678899999999984444555555554 68899998888 88
Q ss_pred c--CeEEEEecccc--eeeeeccccccC-CCCCCCcEEEccC
Q 016020 333 N--RTVAVWNFRGE--LVTSFEDHLLWH-PDCNTNNIYITSD 369 (396)
Q Consensus 333 ~--gti~iWd~~ge--L~t~fedh~l~~-~~c~~n~~~it~~ 369 (396)
+ |.|+|||..|. -++.|+.-.--. .-.|+...|-|+.
T Consensus 337 nl~gni~i~~~~~rf~~~~~~~~~n~s~~~wspd~qF~~~~~ 378 (561)
T COG5354 337 NLQGNIEIFDPAGRFKVAGAFNGLNTSYCDWSPDGQFYDTDT 378 (561)
T ss_pred ccccceEEeccCCceEEEEEeecCCceEeeccCCceEEEecC
Confidence 8 99999999996 444777543221 2246666666553
No 283
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=66.77 E-value=1.7e+02 Score=30.64 Aligned_cols=175 Identities=18% Similarity=0.232 Sum_probs=108.0
Q ss_pred EEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcceeecccCCCCeEEeeCCCCcEEE-eecCCCeE
Q 016020 132 IRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLT-YSAQDSIY 210 (396)
Q Consensus 132 IrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF~~~~l~~PgfVEFDd~NgkIlt-~~a~d~~Y 210 (396)
+|+.-.+..++-|+++. ..-| -+.+=++..|++.+-.+.+-..- .=|--+.|-+ |||+.= -+--++++
T Consensus 147 ~H~a~~tP~~~~l~v~D--LG~D-------ri~~y~~~dg~L~~~~~~~v~~G-~GPRHi~FHp-n~k~aY~v~EL~stV 215 (346)
T COG2706 147 VHSANFTPDGRYLVVPD--LGTD-------RIFLYDLDDGKLTPADPAEVKPG-AGPRHIVFHP-NGKYAYLVNELNSTV 215 (346)
T ss_pred cceeeeCCCCCEEEEee--cCCc-------eEEEEEcccCccccccccccCCC-CCcceEEEcC-CCcEEEEEeccCCEE
Confidence 55566666666666632 2222 12222444788866655443222 2266799988 898742 23449999
Q ss_pred EEEeccCc----eEEEEecc--------CceEEEEEc-CCeEEEEEecCCCeeeeEEEEeec-CcEEEEEEeecccCCcc
Q 016020 211 KVFDLKNY----TMLYSISD--------KHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIED-GTVLKVFYHLLHRNKKV 276 (396)
Q Consensus 211 rVwdlknY----s~lysIs~--------~~VqEIkiS-pg~~Ll~~q~~~~~iplkIl~Iet-G~~l~s~~~~L~~sk~i 276 (396)
.||.+.+- +.|=.|+- ....+|+|| +|=+|-++++.++ .|.+|.|-. |..|....
T Consensus 216 ~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~d--sI~~f~V~~~~g~L~~~~--------- 284 (346)
T COG2706 216 DVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHD--SIAVFSVDPDGGKLELVG--------- 284 (346)
T ss_pred EEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCC--eEEEEEEcCCCCEEEEEE---------
Confidence 99999983 35555543 557789998 6778888888877 555555532 23332221
Q ss_pred chhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc--CeEEEEecccc---eeeeecc
Q 016020 277 DFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN--RTVAVWNFRGE---LVTSFED 351 (396)
Q Consensus 277 ~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~--gti~iWd~~ge---L~t~fed 351 (396)
.-.++.-.|+.|-|.+.+.+.++..- ++|.++-.+.+ |....-+
T Consensus 285 -------------------------------~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~ 333 (346)
T COG2706 285 -------------------------------ITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRY 333 (346)
T ss_pred -------------------------------EeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccc
Confidence 22478889999999999888766654 78999988874 4444444
Q ss_pred ccccCCCC
Q 016020 352 HLLWHPDC 359 (396)
Q Consensus 352 h~l~~~~c 359 (396)
-.-..|-|
T Consensus 334 ~~~p~Pvc 341 (346)
T COG2706 334 AVVPEPVC 341 (346)
T ss_pred cCCCCcEE
Confidence 44334434
No 284
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=66.67 E-value=1.1e+02 Score=28.44 Aligned_cols=171 Identities=18% Similarity=0.286 Sum_probs=95.0
Q ss_pred CcEEEeecCCCeEEEEeccCceEEEEecc-CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEE-----------
Q 016020 198 GKVLTYSAQDSIYKVFDLKNYTMLYSISD-KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKV----------- 265 (396)
Q Consensus 198 gkIlt~~a~d~~YrVwdlknYs~lysIs~-~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s----------- 265 (396)
|..|.-..++| .-++++.+......+.+ ..|..+.+-|...+|+.... -.|.++++.+-.....
T Consensus 7 ~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvLsd---~~l~~~~L~~l~~~~~~~~~~~~~~~~ 82 (275)
T PF00780_consen 7 GDRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVLSD---GQLYVYDLDSLEPVSTSAPLAFPKSRS 82 (275)
T ss_pred CCEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEecccCEEEEEcC---CccEEEEchhhcccccccccccccccc
Confidence 34444446677 45566644444444443 35999999995555554444 3344444444333331
Q ss_pred EEeecccCCccchhh----hhcceeeEeecCCeeeEEEcccc------eEEEecccccCCCceEEEeecCeEEEEEEcCe
Q 016020 266 FYHLLHRNKKVDFIE----QFNEKLLVKQENENLQILDVRNA------ELMEVSRTEFMTPSAFIFLYENQLFLTFRNRT 335 (396)
Q Consensus 266 ~~~~L~~sk~i~FiE----~~~ekLLIKQed~~L~I~Dv~~~------ki~~v~~t~~~~PsAFiFly~~qLFLTfs~gt 335 (396)
..+.++.++.+.|.. .-+...|+-.-...|.||..... +..++ .-..+|.+..|+ ++.+.+.++++
T Consensus 83 ~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~--~lp~~~~~i~~~-~~~i~v~~~~~- 158 (275)
T PF00780_consen 83 LPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEI--SLPDPPSSIAFL-GNKICVGTSKG- 158 (275)
T ss_pred ccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEE--EcCCCcEEEEEe-CCEEEEEeCCc-
Confidence 223456667766666 44555555566669999998763 33443 233677887777 66777776554
Q ss_pred EEEEecc-cceeeee--cccc-cc---CCCCCCCcEEEccCCcEEEEe
Q 016020 336 VAVWNFR-GELVTSF--EDHL-LW---HPDCNTNNIYITSDQDLIISY 376 (396)
Q Consensus 336 i~iWd~~-geL~t~f--edh~-l~---~~~c~~n~~~it~~qd~ii~~ 376 (396)
..+.|++ |+...-+ .+.. .+ ...+..-.++--.+.+++++|
T Consensus 159 f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~ 206 (275)
T PF00780_consen 159 FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCY 206 (275)
T ss_pred eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEe
Confidence 7778888 4432222 2221 01 112333445555556777765
No 285
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=66.44 E-value=1.4e+02 Score=29.37 Aligned_cols=101 Identities=17% Similarity=0.291 Sum_probs=58.6
Q ss_pred CceEEEEEcCC-eEEEEEecCCCeeeeEEEEeec---CcEEEEEE--------eecccCCccchhhhhcceeeEeecCCe
Q 016020 227 KHVQEIKISPG-IMLLIFNRSSSHVPLKILSIED---GTVLKVFY--------HLLHRNKKVDFIEQFNEKLLVKQENEN 294 (396)
Q Consensus 227 ~~VqEIkiSpg-~~Ll~~q~~~~~iplkIl~Iet---G~~l~s~~--------~~L~~sk~i~FiE~~~ekLLIKQed~~ 294 (396)
.++--+.+.+. -.|++.+ ..-|.+|+.+.- +..+.... ..+.--+.+.|-++.|+.++.-+|...
T Consensus 118 ~G~EGla~D~~~~~L~v~k---E~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~ 194 (248)
T PF06977_consen 118 KGFEGLAYDPKTNRLFVAK---ERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRL 194 (248)
T ss_dssp S--EEEEEETTTTEEEEEE---ESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTE
T ss_pred cceEEEEEcCCCCEEEEEe---CCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCe
Confidence 45777888763 2333332 246888888874 44443322 111122338889999999999999999
Q ss_pred eeEEEcccceEEE---ecc------cccCCCceEEEeecCeEEEEE
Q 016020 295 LQILDVRNAELME---VSR------TEFMTPSAFIFLYENQLFLTF 331 (396)
Q Consensus 295 L~I~Dv~~~ki~~---v~~------t~~~~PsAFiFly~~qLFLTf 331 (396)
|.++| .+|+... ..+ ..+.+|....|-+++.||++-
T Consensus 195 l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs 239 (248)
T PF06977_consen 195 LLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS 239 (248)
T ss_dssp EEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE
T ss_pred EEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc
Confidence 99999 8888765 333 235689999999999988875
No 286
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=63.94 E-value=1.6e+02 Score=29.35 Aligned_cols=151 Identities=19% Similarity=0.343 Sum_probs=93.1
Q ss_pred eEEeeCCCCcEEEeecCCC---------eEEEEeccCc------eEEEEeccCc--eEEEEEc-CCeEEEEEecCCCe-e
Q 016020 190 FVEFDDVNGKVLTYSAQDS---------IYKVFDLKNY------TMLYSISDKH--VQEIKIS-PGIMLLIFNRSSSH-V 250 (396)
Q Consensus 190 fVEFDd~NgkIlt~~a~d~---------~YrVwdlknY------s~lysIs~~~--VqEIkiS-pg~~Ll~~q~~~~~-i 250 (396)
+++|-+ .|+.+.|...+. .++||-.+=. ..+|+-.+.. .-.+..| +|-.|++....+.. -
T Consensus 174 ~~~W~~-d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s 252 (414)
T PF02897_consen 174 SVSWSD-DGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSES 252 (414)
T ss_dssp EEEECT-TSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEE
T ss_pred eEEEeC-CCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCC
Confidence 478888 677777766544 5666665433 2799888855 4677777 55666666666666 8
Q ss_pred eeEEEEeecC----cEEEEEEeecccCC-ccchhhhhcceeeEee----cCCeeeEEEcccce---EE-EecccccCCCc
Q 016020 251 PLKILSIEDG----TVLKVFYHLLHRNK-KVDFIEQFNEKLLVKQ----ENENLQILDVRNAE---LM-EVSRTEFMTPS 317 (396)
Q Consensus 251 plkIl~IetG----~~l~s~~~~L~~sk-~i~FiE~~~ekLLIKQ----ed~~L~I~Dv~~~k---i~-~v~~t~~~~Ps 317 (396)
.+-+++.+++ .....+. .+.. ...+++..++.++|.. .+..|-..|+.+.. -. .+.+......-
T Consensus 253 ~v~~~d~~~~~~~~~~~~~l~---~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l 329 (414)
T PF02897_consen 253 EVYLLDLDDGGSPDAKPKLLS---PREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSL 329 (414)
T ss_dssp EEEEEECCCTTTSS-SEEEEE---ESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEE
T ss_pred eEEEEeccccCCCcCCcEEEe---CCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeE
Confidence 8889999886 2333332 4333 3567877899888876 34566677777755 22 22222222223
Q ss_pred eEEEeecCeEEEEEEc---CeEEEEecc-cc
Q 016020 318 AFIFLYENQLFLTFRN---RTVAVWNFR-GE 344 (396)
Q Consensus 318 AFiFly~~qLFLTfs~---gti~iWd~~-ge 344 (396)
.-+-+..+.|+|+... ..+.+||++ |.
T Consensus 330 ~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~ 360 (414)
T PF02897_consen 330 EDVSLFKDYLVLSYRENGSSRLRVYDLDDGK 360 (414)
T ss_dssp EEEEEETTEEEEEEEETTEEEEEEEETT-TE
T ss_pred EEEEEECCEEEEEEEECCccEEEEEECCCCc
Confidence 3334567788888877 378899999 64
No 287
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=62.34 E-value=1.6e+02 Score=28.63 Aligned_cols=115 Identities=17% Similarity=0.182 Sum_probs=67.2
Q ss_pred CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCccchhhhhcceeeEeecCCeeeEE--Ecccce
Q 016020 227 KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQIL--DVRNAE 304 (396)
Q Consensus 227 ~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~--Dv~~~k 304 (396)
..|..|.--.|.++ +.... -+.++++...+.+..-... +....+-=+..++++|++.---+++.++ |-...+
T Consensus 89 g~V~ai~~~~~~lv-~~~g~----~l~v~~l~~~~~l~~~~~~-~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~ 162 (321)
T PF03178_consen 89 GPVTAICSFNGRLV-VAVGN----KLYVYDLDNSKTLLKKAFY-DSPFYITSLSVFKNYILVGDAMKSVSLLRYDEENNK 162 (321)
T ss_dssp S-EEEEEEETTEEE-EEETT----EEEEEEEETTSSEEEEEEE--BSSSEEEEEEETTEEEEEESSSSEEEEEEETTTE-
T ss_pred CcceEhhhhCCEEE-EeecC----EEEEEEccCcccchhhhee-cceEEEEEEeccccEEEEEEcccCEEEEEEEccCCE
Confidence 44555555566643 33332 4668888888833332211 1222333355578999999888888877 555567
Q ss_pred EEEecccc-cCCCceEEEeecCeEEEEEEc-CeEEEEecccceee
Q 016020 305 LMEVSRTE-FMTPSAFIFLYENQLFLTFRN-RTVAVWNFRGELVT 347 (396)
Q Consensus 305 i~~v~~t~-~~~PsAFiFly~~qLFLTfs~-gti~iWd~~geL~t 347 (396)
+..+.+.. ..++.+.-|+.+.+.++.... |.+-++..+.+...
T Consensus 163 l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~ 207 (321)
T PF03178_consen 163 LILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPN 207 (321)
T ss_dssp EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SS
T ss_pred EEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcc
Confidence 88877644 455688888844444444444 89988888764333
No 288
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=61.59 E-value=1.4e+02 Score=29.45 Aligned_cols=100 Identities=12% Similarity=0.148 Sum_probs=60.0
Q ss_pred ceEEEEE-cCCeEEEEEecCCC---------eeeeEEEEeecCcEEEEEEee---cccCCccchhhhhc-------ceee
Q 016020 228 HVQEIKI-SPGIMLLIFNRSSS---------HVPLKILSIEDGTVLKVFYHL---LHRNKKVDFIEQFN-------EKLL 287 (396)
Q Consensus 228 ~VqEIki-Spg~~Ll~~q~~~~---------~iplkIl~IetG~~l~s~~~~---L~~sk~i~FiE~~~-------ekLL 287 (396)
.|+.|++ ..|.|-++-.+.-+ --.|-+||++|++.++.+.+. ++....++-+-.+. -+.+
T Consensus 2 sV~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aY 81 (287)
T PF03022_consen 2 SVQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAY 81 (287)
T ss_dssp -EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEE
Confidence 4677777 46666666555421 135778999999999887743 22222322222222 3566
Q ss_pred EeecC-CeeeEEEcccceEEEecccccCCC--ceEEEeecCeEE
Q 016020 288 VKQEN-ENLQILDVRNAELMEVSRTEFMTP--SAFIFLYENQLF 328 (396)
Q Consensus 288 IKQed-~~L~I~Dv~~~ki~~v~~t~~~~P--sAFiFly~~qLF 328 (396)
|--.+ .-|-+||+.+++-.++... .|.| .+..|..+++.|
T Consensus 82 ItD~~~~glIV~dl~~~~s~Rv~~~-~~~~~p~~~~~~i~g~~~ 124 (287)
T PF03022_consen 82 ITDSGGPGLIVYDLATGKSWRVLHN-SFSPDPDAGPFTIGGESF 124 (287)
T ss_dssp EEETTTCEEEEEETTTTEEEEEETC-GCTTS-SSEEEEETTEEE
T ss_pred EeCCCcCcEEEEEccCCcEEEEecC-CcceeccccceeccCceE
Confidence 65533 6899999999999998777 4444 456776666554
No 289
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=53.92 E-value=22 Score=36.83 Aligned_cols=59 Identities=19% Similarity=0.208 Sum_probs=42.6
Q ss_pred CeEEEEeccCceEEEEecc-CceEEEEEcCCeE-EEEEecCCCeeeeEEEEeecCcEEEEEE
Q 016020 208 SIYKVFDLKNYTMLYSISD-KHVQEIKISPGIM-LLIFNRSSSHVPLKILSIEDGTVLKVFY 267 (396)
Q Consensus 208 ~~YrVwdlknYs~lysIs~-~~VqEIkiSpg~~-Ll~~q~~~~~iplkIl~IetG~~l~s~~ 267 (396)
..+=|+|+++.+.++.|+- ..+..|.+|-+-- +|+.... ....|.|+|..||+.+.+..
T Consensus 269 teVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~-~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 269 TEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSA-GDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEET-TTTEEEEEETTT--EEEEE-
T ss_pred eEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcC-CCCeEEEEeCcCCcEEeehh
Confidence 3567889999999999995 5677899995443 3332222 35789999999999999877
No 290
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=53.20 E-value=43 Score=22.42 Aligned_cols=39 Identities=13% Similarity=0.150 Sum_probs=29.2
Q ss_pred hcceeeEe-ecCCeeeEEEcccceEEEecccccCCCceEEE
Q 016020 282 FNEKLLVK-QENENLQILDVRNAELMEVSRTEFMTPSAFIF 321 (396)
Q Consensus 282 ~~ekLLIK-Qed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiF 321 (396)
.+.+|++- +.+..|-++|..+++++..-+. ...|.++.|
T Consensus 2 d~~~lyv~~~~~~~v~~id~~~~~~~~~i~v-g~~P~~i~~ 41 (42)
T TIGR02276 2 DGTKLYVTNSGSNTVSVIDTATNKVIATIPV-GGYPFGVAV 41 (42)
T ss_pred CCCEEEEEeCCCCEEEEEECCCCeEEEEEEC-CCCCceEEe
Confidence 35667774 4688999999999988875555 467877776
No 291
>PF15065 NCU-G1: Lysosomal transcription factor, NCU-G1
Probab=53.20 E-value=1.4e+02 Score=30.99 Aligned_cols=89 Identities=16% Similarity=0.313 Sum_probs=65.0
Q ss_pred CCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCC-----cceeecccCCCCeEEeeCCCCcE
Q 016020 126 VSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGF-----ALFESESLKWPGFVEFDDVNGKV 200 (396)
Q Consensus 126 ~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~-----~LF~~~~l~~PgfVEFDd~NgkI 200 (396)
.++..-||-+|=.--.-+++. ++.+.+=+. -.++.+.+..+....+- +...+..+.---.+||||+|.+.
T Consensus 9 ~g~~dTlHyvWs~~g~Ptvll--~~T~~~~s~---l~VnW~~lls~~~~~ai~v~p~~v~ys~A~vf~kL~EfnD~ndta 83 (350)
T PF15065_consen 9 VGSNDTLHYVWSSIGAPTVLL--AHTNSPSSA---LNVNWSKLLSPNPSGAITVEPKPVQYSSALVFNKLIEFNDVNDTA 83 (350)
T ss_pred eCCCCeEEEEEecCCCCEEEE--EEcCCCccc---EEeeHHHhcCCCCCCCEEEccCCceEEEeeeeeeheeeeCCCCcc
Confidence 356678899997777889998 555555233 45678888877543321 23444556667889999999999
Q ss_pred EEeecCCCeEEEEeccCce
Q 016020 201 LTYSAQDSIYKVFDLKNYT 219 (396)
Q Consensus 201 lt~~a~d~~YrVwdlknYs 219 (396)
....+..+-|++.||.+++
T Consensus 84 ~~~~~~~~~~~~y~l~~f~ 102 (350)
T PF15065_consen 84 NISTPPGKFYPPYDLSNFS 102 (350)
T ss_pred cccCCCCCceeeeehhhce
Confidence 9987788899999998887
No 292
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=52.97 E-value=62 Score=33.53 Aligned_cols=67 Identities=12% Similarity=0.088 Sum_probs=41.3
Q ss_pred cchhhhhcceeeEeecCCeeeEEEcc-cceEEEe-cccccCCCceEEEeecC-eEEEEEEc-CeEEEEecc
Q 016020 276 VDFIEQFNEKLLVKQENENLQILDVR-NAELMEV-SRTEFMTPSAFIFLYEN-QLFLTFRN-RTVAVWNFR 342 (396)
Q Consensus 276 i~FiE~~~ekLLIKQed~~L~I~Dv~-~~ki~~v-~~t~~~~PsAFiFly~~-qLFLTfs~-gti~iWd~~ 342 (396)
..|.-+..+-++.+.+|..|..||++ .++.+.. ++-|.|-+-+.-=++.. ....|=|. ..|++||++
T Consensus 171 a~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtR 241 (339)
T KOG0280|consen 171 AKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTR 241 (339)
T ss_pred eecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehh
Confidence 45777778999999999999999999 3333332 22232222222222222 23444455 689999999
No 293
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=52.96 E-value=3.1e+02 Score=29.15 Aligned_cols=140 Identities=16% Similarity=0.330 Sum_probs=97.3
Q ss_pred CcEEEeecCCCeEEEEeccCce-----EEEEecc-CceEEEEEc------CCeEEEEEecCCCeeeeEEEEee--cCc--
Q 016020 198 GKVLTYSAQDSIYKVFDLKNYT-----MLYSISD-KHVQEIKIS------PGIMLLIFNRSSSHVPLKILSIE--DGT-- 261 (396)
Q Consensus 198 gkIlt~~a~d~~YrVwdlknYs-----~lysIs~-~~VqEIkiS------pg~~Ll~~q~~~~~iplkIl~Ie--tG~-- 261 (396)
.+|+. .+..|..||++=.... .|-+..= +-|.+|... +...|.+..|. .+.|++++ +|.
T Consensus 38 d~Iiv-GS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~----kl~vY~v~~~~g~~~ 112 (418)
T PF14727_consen 38 DKIIV-GSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPR----KLSVYSVSLVDGTVE 112 (418)
T ss_pred cEEEE-eccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCC----EEEEEEEEecCCCcc
Confidence 34444 4678888888764433 2222221 455555543 34567776666 44555553 233
Q ss_pred ---E--EE-EEEeecccCCc----cchhhhh-cceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEE
Q 016020 262 ---V--LK-VFYHLLHRNKK----VDFIEQF-NEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLT 330 (396)
Q Consensus 262 ---~--l~-s~~~~L~~sk~----i~FiE~~-~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLT 330 (396)
. |. -..|.|.++.. -.|=... .+.|.|+.-|+.|.+|+=.+--..+.++. +..|..+.|.+...-|+|
T Consensus 113 ~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt 191 (418)
T PF14727_consen 113 HGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVT 191 (418)
T ss_pred cCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEE
Confidence 2 22 24477777776 5666666 79999999999999999888777777777 999999999999999999
Q ss_pred EEc-CeEEEEeccc
Q 016020 331 FRN-RTVAVWNFRG 343 (396)
Q Consensus 331 fs~-gti~iWd~~g 343 (396)
.++ .+++-|.++-
T Consensus 192 ~sss~~l~~Yky~~ 205 (418)
T PF14727_consen 192 ASSSWTLECYKYQD 205 (418)
T ss_pred ecCceeEEEecHHH
Confidence 998 6999998864
No 294
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=52.32 E-value=93 Score=33.03 Aligned_cols=68 Identities=16% Similarity=0.303 Sum_probs=51.3
Q ss_pred cchhhhhcceeeEeecCCeeeEEEccc-------ceEEEecccc---------cCCCceEEEeecCeEEEEEEcCeEEEE
Q 016020 276 VDFIEQFNEKLLVKQENENLQILDVRN-------AELMEVSRTE---------FMTPSAFIFLYENQLFLTFRNRTVAVW 339 (396)
Q Consensus 276 i~FiE~~~ekLLIKQed~~L~I~Dv~~-------~ki~~v~~t~---------~~~PsAFiFly~~qLFLTfs~gti~iW 339 (396)
-+|-+....-+.--.-.++|++-|++. .|+-+-+... --..|-+=|++.|.++||=..-||++|
T Consensus 219 aEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~w 298 (433)
T KOG1354|consen 219 AEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLW 298 (433)
T ss_pred hccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEE
Confidence 467777778888888899999999993 4555432111 123456779999999999999999999
Q ss_pred eccc
Q 016020 340 NFRG 343 (396)
Q Consensus 340 d~~g 343 (396)
|.+-
T Consensus 299 D~nm 302 (433)
T KOG1354|consen 299 DLNM 302 (433)
T ss_pred eccc
Confidence 9955
No 295
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=52.31 E-value=3.7e+02 Score=29.87 Aligned_cols=57 Identities=14% Similarity=0.037 Sum_probs=33.2
Q ss_pred ceeecccC-CCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEeccCceEEEEEcC
Q 016020 179 LFESESLK-WPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISP 236 (396)
Q Consensus 179 LF~~~~l~-~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~~~VqEIkiSp 236 (396)
-.++..|. .+--..+.+ ++..+.-.-+||.+++||.+...-.+.=..--...++|.|
T Consensus 252 svtsipL~s~v~~ca~sp-~E~kLvlGC~DgSiiLyD~~~~~t~~~ka~~~P~~iaWHp 309 (545)
T PF11768_consen 252 SVTSIPLPSQVICCARSP-SEDKLVLGCEDGSIILYDTTRGVTLLAKAEFIPTLIAWHP 309 (545)
T ss_pred EEEEEecCCcceEEecCc-ccceEEEEecCCeEEEEEcCCCeeeeeeecccceEEEEcC
Confidence 34444554 333445555 6667777778999999998776544332223344455543
No 296
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=51.75 E-value=27 Score=33.18 Aligned_cols=66 Identities=20% Similarity=0.260 Sum_probs=51.6
Q ss_pred cccccccccceEEEeeccchhhhhhccccceeeeccccceEEEecC---------------CCCceEEEEeeecCCCeEE
Q 016020 81 VLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRETNRRICFLNV---------------SPDEVIRSLFYNKNNDSLI 145 (396)
Q Consensus 81 ~~~~l~~RS~V~EIv~a~dii~~L~~sG~c~af~~~t~~~ic~lN~---------------s~~evIrsifyN~~n~slI 145 (396)
.+|+|.=-++|.=+-.-+.+++|++..|...+||-.+++ |.+.+ .+..-|.++..+++..-||
T Consensus 5 l~P~i~Lgs~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k--~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV 82 (219)
T PF07569_consen 5 LLPPIVLGSPVSFLECNGSYLLAITSSGLLYVWNLKKGK--AVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIV 82 (219)
T ss_pred ccCcEecCCceEEEEeCCCEEEEEeCCCeEEEEECCCCe--eccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEE
Confidence 478888889998888889999999999999999988774 44444 5666677777776666666
Q ss_pred EEE
Q 016020 146 TVS 148 (396)
Q Consensus 146 ~vS 148 (396)
+.|
T Consensus 83 ~ls 85 (219)
T PF07569_consen 83 TLS 85 (219)
T ss_pred EEe
Confidence 655
No 297
>PF11347 DUF3148: Protein of unknown function (DUF3148); InterPro: IPR021495 This family of proteins has no known function.
Probab=51.46 E-value=22 Score=28.72 Aligned_cols=37 Identities=16% Similarity=0.396 Sum_probs=32.3
Q ss_pred cccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEeccCceEEEEEcCCeEEE
Q 016020 183 ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLL 241 (396)
Q Consensus 183 ~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~~~VqEIkiSpg~~Ll 241 (396)
-+|+-||.|.-+| -|+|++--+ .++|.||++-|.+|+
T Consensus 22 PmLRp~dlv~~ge-~G~i~~rrp---------------------~~~w~VRf~~GtfLi 58 (63)
T PF11347_consen 22 PMLRPPDLVKIGE-VGRIVDRRP---------------------GDYWAVRFRRGTFLI 58 (63)
T ss_pred cccCCcCccccCC-cEEEEEecC---------------------CCEEEEEEeceeEee
Confidence 4789999999999 699988655 789999999999985
No 298
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=51.43 E-value=95 Score=32.62 Aligned_cols=64 Identities=17% Similarity=0.181 Sum_probs=39.0
Q ss_pred CcEEEeecCCCeEEEEeccCceEEEEeccC------------------ceEEE------------EEcCCeEEEEEecCC
Q 016020 198 GKVLTYSAQDSIYKVFDLKNYTMLYSISDK------------------HVQEI------------KISPGIMLLIFNRSS 247 (396)
Q Consensus 198 gkIlt~~a~d~~YrVwdlknYs~lysIs~~------------------~VqEI------------kiSpg~~Ll~~q~~~ 247 (396)
...|..=..|+..||||+++.++++++.-- .-..+ .-..+.+++++-+..
T Consensus 230 ~~~l~tl~~D~~LRiW~l~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~ 309 (547)
T PF11715_consen 230 DTFLFTLSRDHTLRIWSLETGQCLATIDLLSNASWLPTDPSSYLPVPSQDSLIRVIQGHFLPNTSSSSGSRFLCVYYSPF 309 (547)
T ss_dssp TTEEEEEETTSEEEEEETTTTCEEEEEETT----------------TSSS--SS------S----EE-ESSSEEEEEETS
T ss_pred CCEEEEEeCCCeEEEEECCCCeEEEEeccccccccccccccccccCcchhcchheEEeeecccccCCCCCeEEEEEEcCC
Confidence 345555567999999999999998876432 01111 122444555666665
Q ss_pred CeeeeEEEEeecCc
Q 016020 248 SHVPLKILSIEDGT 261 (396)
Q Consensus 248 ~~iplkIl~IetG~ 261 (396)
+..-+++|.++.+.
T Consensus 310 ~~g~F~~~~~~~~~ 323 (547)
T PF11715_consen 310 SEGEFKFFSLSPSA 323 (547)
T ss_dssp SS-EEEEEEEE---
T ss_pred CCCeEEEEEEEEec
Confidence 66778888888443
No 299
>COG1499 NMD3 NMD protein affecting ribosome stability and mRNA decay [Translation, ribosomal structure and biogenesis]
Probab=50.35 E-value=98 Score=32.25 Aligned_cols=89 Identities=11% Similarity=0.110 Sum_probs=69.2
Q ss_pred EEeecCcEEEEEE--eecccCCccchhhhhc-ceeeEeecCCeeeEEEcccceEEEecccccCCCc--eEEEeecCeEEE
Q 016020 255 LSIEDGTVLKVFY--HLLHRNKKVDFIEQFN-EKLLVKQENENLQILDVRNAELMEVSRTEFMTPS--AFIFLYENQLFL 329 (396)
Q Consensus 255 l~IetG~~l~s~~--~~L~~sk~i~FiE~~~-ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~Ps--AFiFly~~qLFL 329 (396)
.+-+||+..+.|. .+++.-.+=|.++.-+ .++++.-.+..++..|+.|++-.+.+.....-.. ++.+-++..-|.
T Consensus 227 ~d~~tgk~~yR~t~Svrip~~~~gDiV~~~~~~~~~v~~~~~~~~~~dl~t~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (355)
T COG1499 227 RDRFTGKRVYRFTYSVRIPEFRPGDIVSVRGRQLVLVRSIGKGIVVLDLETGEPVEITWSVYKRNEGKVAVKEPRLKKAV 306 (355)
T ss_pred EecCCCceEEEEEEEEECCCCCCCCEEEECCCeEEEEEEecCceEEEecccCCccccChhhcccCcceeeeccccceEEE
Confidence 3444999999866 5678888899999888 8999999999999999999998887775555444 555555555576
Q ss_pred EEEc--CeEEEEeccc
Q 016020 330 TFRN--RTVAVWNFRG 343 (396)
Q Consensus 330 Tfs~--gti~iWd~~g 343 (396)
++|. +.+.+.|.+.
T Consensus 307 vvs~~~~~~~v~d~et 322 (355)
T COG1499 307 VVSRDPSAIQVLDPET 322 (355)
T ss_pred EEecCCCceEEEecce
Confidence 6666 5699999875
No 300
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=50.02 E-value=2.8e+02 Score=27.84 Aligned_cols=26 Identities=35% Similarity=0.533 Sum_probs=20.3
Q ss_pred ceeec-ccCCCCeEEeeCCCCcEEEeec
Q 016020 179 LFESE-SLKWPGFVEFDDVNGKVLTYSA 205 (396)
Q Consensus 179 LF~~~-~l~~PgfVEFDd~NgkIlt~~a 205 (396)
||-++ .|..|--+.||+ .|++...+.
T Consensus 6 l~A~~p~~~~P~~ia~d~-~G~l~V~e~ 32 (367)
T TIGR02604 6 LFAAEPLLRNPIAVCFDE-RGRLWVAEG 32 (367)
T ss_pred EEECCCccCCCceeeECC-CCCEEEEeC
Confidence 45444 578899999999 899988664
No 301
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=49.71 E-value=17 Score=41.47 Aligned_cols=109 Identities=13% Similarity=0.244 Sum_probs=71.2
Q ss_pred EeeCCCCcEEEeecCCCeEEEEeccCceEEEEeccCceEEEEEcCCeEEEEEecCCCeeeeEEEEe-ecCcEEEEEEeec
Q 016020 192 EFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSI-EDGTVLKVFYHLL 270 (396)
Q Consensus 192 EFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~I-etG~~l~s~~~~L 270 (396)
-|-+-+-.|+|-++.|...-.|||+.=- -|+-+|++ ++|...+..++.
T Consensus 121 n~~~q~pdVlatcsvdt~vh~wd~rSp~------------------------------~p~ys~~~w~s~asqVkwnyk- 169 (1081)
T KOG0309|consen 121 NFNPQHPDVLATCSVDTYVHAWDMRSPH------------------------------RPFYSTSSWRSAASQVKWNYK- 169 (1081)
T ss_pred ccCCCCCcceeeccccccceeeeccCCC------------------------------cceeeeecccccCceeeeccc-
Confidence 3455677899999999999999997533 33333332 345555555432
Q ss_pred ccCCccchhhhhcceeeEeecCCeeeEEEcccce-EEEecccccCCCceEEEee--cCeEEEEEEcCeEEEEeccc
Q 016020 271 HRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE-LMEVSRTEFMTPSAFIFLY--ENQLFLTFRNRTVAVWNFRG 343 (396)
Q Consensus 271 ~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~k-i~~v~~t~~~~PsAFiFly--~~qLFLTfs~gti~iWd~~g 343 (396)
+-.+|.+..|..+.|||++.+. -++..+++--..-..-|+. +++++-.-.+|+|++||-+-
T Consensus 170 ------------~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~k 233 (1081)
T KOG0309|consen 170 ------------DPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSK 233 (1081)
T ss_pred ------------CcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccc
Confidence 2336677888899999998854 4455555433333333433 66777777779999999875
No 302
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=49.49 E-value=76 Score=21.19 Aligned_cols=30 Identities=13% Similarity=0.169 Sum_probs=25.3
Q ss_pred CCcEEEeecCCCeEEEEeccCceEEEEecc
Q 016020 197 NGKVLTYSAQDSIYKVFDLKNYTMLYSISD 226 (396)
Q Consensus 197 NgkIlt~~a~d~~YrVwdlknYs~lysIs~ 226 (396)
++++.+.+..++.+-++|.++++.+.+|+-
T Consensus 3 ~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 3 GTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 466888888899999999999998888774
No 303
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=49.09 E-value=2.9e+02 Score=27.62 Aligned_cols=150 Identities=17% Similarity=0.190 Sum_probs=81.6
Q ss_pred CcceeecccCCCC------eEEeeCCCCcEEEeecC-----CCeEEEEeccCceEEE-EeccCceEEEEEcCCeEEEEEe
Q 016020 177 FALFESESLKWPG------FVEFDDVNGKVLTYSAQ-----DSIYKVFDLKNYTMLY-SISDKHVQEIKISPGIMLLIFN 244 (396)
Q Consensus 177 ~~LF~~~~l~~Pg------fVEFDd~NgkIlt~~a~-----d~~YrVwdlknYs~ly-sIs~~~VqEIkiSpg~~Ll~~q 244 (396)
..||.-..|.--+ .+.+.+ +|+-+|+... ...++|+|+++.+.+= .|..-...-|.|+++--.+++.
T Consensus 109 evllD~n~l~~~~~~~~~~~~~~Sp-dg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~ 187 (414)
T PF02897_consen 109 EVLLDPNELAKDGGYVSLGGFSVSP-DGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYT 187 (414)
T ss_dssp EEEEEGGGGSTTSS-EEEEEEEETT-TSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEE
T ss_pred EEEEcchHhhccCceEEeeeeeECC-CCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEE
Confidence 4566665565444 456666 8888888754 3569999999998664 3344444448899873333333
Q ss_pred c-CCC-e-----eeeEEEEeecCcEEEE--EEeecccCC----ccchhhhhcceeeEee---cC-CeeeEEEcccc----
Q 016020 245 R-SSS-H-----VPLKILSIEDGTVLKV--FYHLLHRNK----KVDFIEQFNEKLLVKQ---EN-ENLQILDVRNA---- 303 (396)
Q Consensus 245 ~-~~~-~-----iplkIl~IetG~~l~s--~~~~L~~sk----~i~FiE~~~ekLLIKQ---ed-~~L~I~Dv~~~---- 303 (396)
. ... . .|-+|+=..=|+.... +.+--.... .+.... .+++|+|.. .. ..+-+.|+.++
T Consensus 188 ~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~-d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~ 266 (414)
T PF02897_consen 188 RFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSK-DGRYLFISSSSGTSESEVYLLDLDDGGSPD 266 (414)
T ss_dssp ECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-T-TSSEEEEEEESSSSEEEEEEEECCCTTTSS
T ss_pred EeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecC-cccEEEEEEEccccCCeEEEEeccccCCCc
Confidence 2 221 2 2666666555555443 221111111 122233 788888865 22 45788888875
Q ss_pred -eEEEecccccCCCceEEEeecCeEEE
Q 016020 304 -ELMEVSRTEFMTPSAFIFLYENQLFL 329 (396)
Q Consensus 304 -ki~~v~~t~~~~PsAFiFly~~qLFL 329 (396)
+...+.+ .......++-...+.+|+
T Consensus 267 ~~~~~l~~-~~~~~~~~v~~~~~~~yi 292 (414)
T PF02897_consen 267 AKPKLLSP-REDGVEYYVDHHGDRLYI 292 (414)
T ss_dssp -SEEEEEE-SSSS-EEEEEEETTEEEE
T ss_pred CCcEEEeC-CCCceEEEEEccCCEEEE
Confidence 5555533 222333444444444443
No 304
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=48.32 E-value=2e+02 Score=25.52 Aligned_cols=100 Identities=17% Similarity=0.213 Sum_probs=56.1
Q ss_pred CeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEeccCceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEe
Q 016020 189 GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYH 268 (396)
Q Consensus 189 gfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~ 268 (396)
.+.+||.....=|...+.|.++|||+=. +.+++|+ ....+..|.....
T Consensus 6 ~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~--------e~~~v~~L~~~~~---------------------- 53 (111)
T PF14783_consen 6 CLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEIT--------ETDKVTSLCSLGG---------------------- 53 (111)
T ss_pred EEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEe--------cccceEEEEEcCC----------------------
Confidence 3677887655556666899999999743 4444444 3333333222222
Q ss_pred ecccCCccchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecC-----eEEEEEEcCeEEE
Q 016020 269 LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYEN-----QLFLTFRNRTVAV 338 (396)
Q Consensus 269 ~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~-----qLFLTfs~gti~i 338 (396)
++..-.-+|+.+-+||-.. ++-++. -...|-+..+..-+ +|.+--+||.|++
T Consensus 54 ---------------~~F~Y~l~NGTVGvY~~~~-RlWRiK--SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 54 ---------------GRFAYALANGTVGVYDRSQ-RLWRIK--SKNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred ---------------CEEEEEecCCEEEEEeCcc-eeeeec--cCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 1122333455555565422 223332 22336677776655 6888888898876
No 305
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=48.06 E-value=94 Score=33.16 Aligned_cols=111 Identities=8% Similarity=0.067 Sum_probs=77.6
Q ss_pred CceEEEEEc-CCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCccchhhhhcceeeEeecCCeeeEEEcccceE
Q 016020 227 KHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAEL 305 (396)
Q Consensus 227 ~~VqEIkiS-pg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki 305 (396)
.-|..+++- +|..|+..... .-.++||+..+|+.+--.-.-|+...-+-|.+ +|++|+-..-|.-.++|+......
T Consensus 196 ~pVtsmqwn~dgt~l~tAS~g--sssi~iWdpdtg~~~pL~~~glgg~slLkwSP-dgd~lfaAt~davfrlw~e~q~wt 272 (445)
T KOG2139|consen 196 NPVTSMQWNEDGTILVTASFG--SSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP-DGDVLFAATCDAVFRLWQENQSWT 272 (445)
T ss_pred ceeeEEEEcCCCCEEeecccC--cceEEEEcCCCCCcccccccCCCceeeEEEcC-CCCEEEEecccceeeeehhcccce
Confidence 446677776 45555555555 45689999999887654333334444477888 999999999999999997766554
Q ss_pred EE---ecccccCCCceEEEeecCeEEEEEEcCeEEEEeccc
Q 016020 306 ME---VSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRG 343 (396)
Q Consensus 306 ~~---v~~t~~~~PsAFiFly~~qLFLTfs~gti~iWd~~g 343 (396)
.+ ...+ ..-.-+..+++.-.|-..+|+-.+|.++-
T Consensus 273 ~erw~lgsg---rvqtacWspcGsfLLf~~sgsp~lysl~f 310 (445)
T KOG2139|consen 273 KERWILGSG---RVQTACWSPCGSFLLFACSGSPRLYSLTF 310 (445)
T ss_pred ecceeccCC---ceeeeeecCCCCEEEEEEcCCceEEEEee
Confidence 44 3333 44556778888877777778888887654
No 306
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=46.70 E-value=3.6e+02 Score=28.06 Aligned_cols=237 Identities=19% Similarity=0.219 Sum_probs=127.8
Q ss_pred cchhhhhhccccceeeeccccceEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCC
Q 016020 98 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGF 177 (396)
Q Consensus 98 ~dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~ 177 (396)
+-++++-+|||.-.|-|..||+++=. .+---+..-|-|. --+|-.|-|+..-.=-| .=+..+-.
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We----------~ilg~RiE~sa~v-----vgdfVV~GCy~g~lYfl-~~~tGs~~ 86 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWE----------AILGVRIECSAIV-----VGDFVVLGCYSGGLYFL-CVKTGSQI 86 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEee----------hhhCceeeeeeEE-----ECCEEEEEEccCcEEEE-Eecchhhe
Confidence 46788899999999999999987642 1111111222222 12333445554321111 00111111
Q ss_pred cceee-cccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEeccCceEEEEEcCCeEEEEEecCCCeeeeEEEE
Q 016020 178 ALFES-ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILS 256 (396)
Q Consensus 178 ~LF~~-~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~ 256 (396)
-.|+. +.++--.-++||- -.+--.++|+++-+-|.|+|.++|+.. ++|... ..|.-+-++=.|+-
T Consensus 87 w~f~~~~~vk~~a~~d~~~---glIycgshd~~~yalD~~~~~cVyksk---------cgG~~f--~sP~i~~g~~sly~ 152 (354)
T KOG4649|consen 87 WNFVILETVKVRAQCDFDG---GLIYCGSHDGNFYALDPKTYGCVYKSK---------CGGGTF--VSPVIAPGDGSLYA 152 (354)
T ss_pred eeeeehhhhccceEEcCCC---ceEEEecCCCcEEEecccccceEEecc---------cCCcee--ccceecCCCceEEE
Confidence 23433 3344444455543 444556889999999999999999944 344432 22322223333443
Q ss_pred eec-CcEEEEEE-------eecccCCccchhhhhcc------eeeEeecCCeeeEEEcccceEEE---ecccccCC----
Q 016020 257 IED-GTVLKVFY-------HLLHRNKKVDFIEQFNE------KLLVKQENENLQILDVRNAELME---VSRTEFMT---- 315 (396)
Q Consensus 257 Iet-G~~l~s~~-------~~L~~sk~i~FiE~~~e------kLLIKQed~~L~I~Dv~~~ki~~---v~~t~~~~---- 315 (396)
.-| |..|...+ +-++ -.|-+.|++ ++.|.--|+.|-.+| .+|+.+. +.-+.||.
T Consensus 153 a~t~G~vlavt~~~~~~~~~w~~----~~~~PiF~splcv~~sv~i~~VdG~l~~f~-~sG~qvwr~~t~GpIf~~Pc~s 227 (354)
T KOG4649|consen 153 AITAGAVLAVTKNPYSSTEFWAA----TRFGPIFASPLCVGSSVIITTVDGVLTSFD-ESGRQVWRPATKGPIFMEPCES 227 (354)
T ss_pred EeccceEEEEccCCCCcceehhh----hcCCccccCceeccceEEEEEeccEEEEEc-CCCcEEEeecCCCceecccccC
Confidence 333 44444222 1111 123333444 555555677787777 5555544 22233333
Q ss_pred -Cc-eEEEeecCeEEEEEEc-CeEEEEeccc--cee------eeeccccccCCC-------CCCCcEEEccC
Q 016020 316 -PS-AFIFLYENQLFLTFRN-RTVAVWNFRG--ELV------TSFEDHLLWHPD-------CNTNNIYITSD 369 (396)
Q Consensus 316 -Ps-AFiFly~~qLFLTfs~-gti~iWd~~g--eL~------t~fedh~l~~~~-------c~~n~~~it~~ 369 (396)
|+ -.||+-..+-|-.--. -...+|.++. .+- -.||-|.+-..+ |-+++..|-.+
T Consensus 228 ~Ps~q~i~~~~~~Cf~~~~p~~ghL~w~~~~g~t~~vy~~p~l~F~~h~~~~S~~~ll~~~s~dgkv~il~~ 299 (354)
T KOG4649|consen 228 RPSCQQISLENENCFCAPLPIAGHLLWATQSGTTLHVYLSPKLRFDLHSPGISYPKLLRRSSGDGKVMILMT 299 (354)
T ss_pred CCcceEEEEecCCeEEEeccccceEEEEecCCcEEEEEeCcccceeccCCCCcchhhhhhhcCCCcEEEEEe
Confidence 55 5566666666766666 5677888876 211 147888877764 78888877643
No 307
>PF04435 SPK: Domain of unknown function (DUF545) ; InterPro: IPR006570 SPK is a domain of unknown function found in SET and PHD domain containing proteins and protein kinases.
Probab=46.50 E-value=20 Score=29.64 Aligned_cols=26 Identities=31% Similarity=0.611 Sum_probs=22.4
Q ss_pred cCCCCeEEeeCCCCcEEEeecCCCeEE
Q 016020 185 LKWPGFVEFDDVNGKVLTYSAQDSIYK 211 (396)
Q Consensus 185 l~~PgfVEFDd~NgkIlt~~a~d~~Yr 211 (396)
|+-=|-||.|+ +|+|+.|.+.|+.++
T Consensus 83 L~~~a~v~lD~-~~rI~~Y~s~dg~l~ 108 (109)
T PF04435_consen 83 LRKHADVELDE-KGRIIKYKSKDGSLK 108 (109)
T ss_pred HHhCcEEEEcC-CCCEEEEEeCCCEEe
Confidence 45567899998 999999999999876
No 308
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=45.63 E-value=53 Score=32.72 Aligned_cols=58 Identities=22% Similarity=0.461 Sum_probs=41.5
Q ss_pred CCCceEEEeecCeEEEEEEcCeEEEEecccce---eeeeccc----------cccCCC-CCCCcEEEccCCc
Q 016020 314 MTPSAFIFLYENQLFLTFRNRTVAVWNFRGEL---VTSFEDH----------LLWHPD-CNTNNIYITSDQD 371 (396)
Q Consensus 314 ~~PsAFiFly~~qLFLTfs~gti~iWd~~geL---~t~fedh----------~l~~~~-c~~n~~~it~~qd 371 (396)
..|.+..|++++.+|++-+.|.|.+++-+|.. ++..++- +..||+ -.++.+|++.+++
T Consensus 2 ~~P~~~a~~pdG~l~v~e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~ 73 (331)
T PF07995_consen 2 NNPRSMAFLPDGRLLVAERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNA 73 (331)
T ss_dssp SSEEEEEEETTSCEEEEETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE
T ss_pred CCceEEEEeCCCcEEEEeCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcc
Confidence 36899999999999999999999999988865 3344311 134454 4567889888864
No 309
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=45.39 E-value=3.7e+02 Score=27.86 Aligned_cols=54 Identities=22% Similarity=0.330 Sum_probs=33.1
Q ss_pred CCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEec----cCceEEEE-----Ec-CCeEEEEEe
Q 016020 188 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS----DKHVQEIK-----IS-PGIMLLIFN 244 (396)
Q Consensus 188 PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs----~~~VqEIk-----iS-pg~~Ll~~q 244 (396)
+=.+.|++ +...+. =.+||.++|+|+.+.. -|++. ...|.|-+ +. .|+++|...
T Consensus 83 iv~~~wt~-~e~Lvv-V~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~~ 146 (410)
T PF04841_consen 83 IVGMGWTD-DEELVV-VQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYKNGIVVLTGN 146 (410)
T ss_pred EEEEEECC-CCeEEE-EEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCCCCEEEECCC
Confidence 34566666 333332 3589999999998666 55543 35555553 33 777776543
No 310
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=44.17 E-value=3.1e+02 Score=26.60 Aligned_cols=161 Identities=17% Similarity=0.272 Sum_probs=81.9
Q ss_pred CeEEEEeccCceEEEEe--cc-CceE---EEEEcC-----CeEEEEEecC---C----CeeeeEEEEeecC----cEEEE
Q 016020 208 SIYKVFDLKNYTMLYSI--SD-KHVQ---EIKISP-----GIMLLIFNRS---S----SHVPLKILSIEDG----TVLKV 265 (396)
Q Consensus 208 ~~YrVwdlknYs~lysI--s~-~~Vq---EIkiSp-----g~~Ll~~q~~---~----~~iplkIl~IetG----~~l~s 265 (396)
+++++.|-.+++.+.++ .+ |.+. .+++.. -.++++-..- . +..-+.+|.+.++ ..++.
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 56677777777644433 23 4444 444443 2333332221 1 1266889999995 23332
Q ss_pred EEeecccCCccchhhhhcceeeEeecCCeeeEEEcccce-EEEecccccCCCceEEEeecCeEEEEEEc--CeEEEEecc
Q 016020 266 FYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE-LMEVSRTEFMTPSAFIFLYENQLFLTFRN--RTVAVWNFR 342 (396)
Q Consensus 266 ~~~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~k-i~~v~~t~~~~PsAFiFly~~qLFLTfs~--gti~iWd~~ 342 (396)
.. --.-...|-=+.+++++|++. -|+.|.+|++...+ +..+...+....-.-+-...+ ++.+.| ..+.++.++
T Consensus 82 i~-~~~~~g~V~ai~~~~~~lv~~-~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~--~I~vgD~~~sv~~~~~~ 157 (321)
T PF03178_consen 82 IH-STEVKGPVTAICSFNGRLVVA-VGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKN--YILVGDAMKSVSLLRYD 157 (321)
T ss_dssp EE-EEEESS-EEEEEEETTEEEEE-ETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETT--EEEEEESSSSEEEEEEE
T ss_pred EE-EEeecCcceEhhhhCCEEEEe-ecCEEEEEEccCcccchhhheecceEEEEEEecccc--EEEEEEcccCEEEEEEE
Confidence 21 112234455566688995554 57999999999999 776544333223333334445 444555 777776444
Q ss_pred --cc-eee-eeccccccCCC--CC-CCcEEEccCCcE
Q 016020 343 --GE-LVT-SFEDHLLWHPD--CN-TNNIYITSDQDL 372 (396)
Q Consensus 343 --ge-L~t-~fedh~l~~~~--c~-~n~~~it~~qd~ 372 (396)
+. |.- .=+-...|... +- +++.+|.+|.+-
T Consensus 158 ~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~g 194 (321)
T PF03178_consen 158 EENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDG 194 (321)
T ss_dssp TTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTS
T ss_pred ccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCC
Confidence 43 221 11112334222 22 444777766663
No 311
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=44.13 E-value=44 Score=21.91 Aligned_cols=28 Identities=21% Similarity=0.454 Sum_probs=24.0
Q ss_pred cCCCCeEEeeCCCCcEEEeecCCCeEEEE
Q 016020 185 LKWPGFVEFDDVNGKVLTYSAQDSIYKVF 213 (396)
Q Consensus 185 l~~PgfVEFDd~NgkIlt~~a~d~~YrVw 213 (396)
|.+|.-+-.|+ +|.|...+.....+++|
T Consensus 1 f~~P~gvav~~-~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 1 FNYPHGVAVDS-DGNIYVADSGNHRVQVF 28 (28)
T ss_dssp BSSEEEEEEET-TSEEEEEECCCTEEEEE
T ss_pred CcCCcEEEEeC-CCCEEEEECCCCEEEEC
Confidence 46799999995 99999999988888876
No 312
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=44.04 E-value=2.1e+02 Score=30.52 Aligned_cols=106 Identities=16% Similarity=0.176 Sum_probs=67.0
Q ss_pred cEEEeecCCCeEEEEeccCceEEEEecc---CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEE--------
Q 016020 199 KVLTYSAQDSIYKVFDLKNYTMLYSISD---KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFY-------- 267 (396)
Q Consensus 199 kIlt~~a~d~~YrVwdlknYs~lysIs~---~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~-------- 267 (396)
+.+.++--|..+||=.+-.-.-+-+..- +.|.-|.+-++-.|| +. .++-.|.+||+.+|+.|..+.
T Consensus 164 ~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~Ll-S~--sGD~tlr~Wd~~sgk~L~t~dl~s~~~~i 240 (390)
T KOG3914|consen 164 QFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYLLL-SG--SGDKTLRLWDITSGKLLDTCDLSSLVIPI 240 (390)
T ss_pred CEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCceee-ec--CCCCcEEEEecccCCcccccchhHhhhhc
Confidence 4444444577788755444332222221 788888899888853 33 336889999999999997554
Q ss_pred eecccCCc----cchhhhhcceeeEeecCCeeeEEEcccceEEEe
Q 016020 268 HLLHRNKK----VDFIEQFNEKLLVKQENENLQILDVRNAELMEV 308 (396)
Q Consensus 268 ~~L~~sk~----i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v 308 (396)
..|.+.+. +.|.| +...+.++-+|-++-|+..-+-+..-|
T Consensus 241 ~~lap~~f~~~~i~i~e-~~~~~~~~~~~~p~~if~~~a~~~~~v 284 (390)
T KOG3914|consen 241 LPLAPPKFIPTIIAIFE-SSRLVWLLCDGTPVVIFGAEALPTSLV 284 (390)
T ss_pred cccCchhhhhhHHHHHH-hhhhhheecCCCeEEEEeecCCCceeE
Confidence 11222222 77888 666667777777777776666555543
No 313
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=43.40 E-value=1.1e+02 Score=30.29 Aligned_cols=87 Identities=16% Similarity=0.211 Sum_probs=54.4
Q ss_pred eeeeEEEEeecCcEEEEEEeecccCCccchhhhhcceeeEeecCCeeeEEEcccceEEEecccc----------------
Q 016020 249 HVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTE---------------- 312 (396)
Q Consensus 249 ~iplkIl~IetG~~l~s~~~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~---------------- 312 (396)
..-+-|+|+++|+...-... ........+.+ .|.+|+.-+ |.+|-+.++.+++.+.+-...
T Consensus 22 ~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP-~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEE 98 (353)
T PF00930_consen 22 KGDYYIYDIETGEITPLTPP-PPKLQDAKWSP-DGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEE 98 (353)
T ss_dssp EEEEEEEETTTTEEEESS-E-ETTBSEEEE-S-SSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHH
T ss_pred ceeEEEEecCCCceEECcCC-ccccccceeec-CCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceecccc
Confidence 35677899999876664332 23444477777 577777766 468999999888777643322
Q ss_pred -cCCCceEEEeecCeEE--EEEEcCeEEE
Q 016020 313 -FMTPSAFIFLYENQLF--LTFRNRTVAV 338 (396)
Q Consensus 313 -~~~PsAFiFly~~qLF--LTfs~gti~i 338 (396)
+....++-++++++-+ +.+-++.|+.
T Consensus 99 v~~~~~~~~WSpd~~~la~~~~d~~~v~~ 127 (353)
T PF00930_consen 99 VFDRRSAVWWSPDSKYLAFLRFDEREVPE 127 (353)
T ss_dssp TSSSSBSEEE-TTSSEEEEEEEE-TTS-E
T ss_pred ccccccceEECCCCCEEEEEEECCcCCce
Confidence 6778999999988874 3443344433
No 314
>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]
Probab=42.11 E-value=19 Score=34.03 Aligned_cols=59 Identities=14% Similarity=0.209 Sum_probs=50.9
Q ss_pred EeccCceEEEEeccCceEEE-EEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeeccc
Q 016020 213 FDLKNYTMLYSISDKHVQEI-KISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHR 272 (396)
Q Consensus 213 wdlknYs~lysIs~~~VqEI-kiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~ 272 (396)
|..+|=+++-.++...+++. ..-+|+.+.+-.+. ..+|.+|-+|.-+..+..|||.|+-
T Consensus 69 fGe~~~~lvq~vp~~~F~~~~~~~vGm~~~~~~~~-~~~~~~V~~V~~~~V~VDfNHpLAG 128 (174)
T COG1047 69 FGEYDPDLVQRVPRDEFQGVGELEVGMEVEAEGGD-GEIPGVVTEVSGDRVTVDFNHPLAG 128 (174)
T ss_pred cCCCChHHeEEecHHHhCcCCCCCCCcEEEEcCCC-ceeeEEEEEEcCCEEEEeCCCcCCC
Confidence 66677778888888888888 78899999887777 8899999999999999999987764
No 315
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=41.94 E-value=1.4e+02 Score=32.20 Aligned_cols=67 Identities=21% Similarity=0.254 Sum_probs=49.9
Q ss_pred cchhhhhcc-eeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeec-CeEEEEEEcCeEEEEeccc
Q 016020 276 VDFIEQFNE-KLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYE-NQLFLTFRNRTVAVWNFRG 343 (396)
Q Consensus 276 i~FiE~~~e-kLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~-~qLFLTfs~gti~iWd~~g 343 (396)
+.|.+ +++ .|...+-|.-|+|.|+.++-...+=..+.+.=|+-.=+.+ +-+|--..+|.|-|||.+-
T Consensus 199 lafSp-~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~ 267 (463)
T KOG1645|consen 199 LAFSP-FNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQ 267 (463)
T ss_pred hccCc-cccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEeccCceEEEEEccC
Confidence 78888 666 7999999999999999999888766666444343333333 3345666789999999987
No 316
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=41.34 E-value=2.7e+02 Score=28.50 Aligned_cols=112 Identities=15% Similarity=0.236 Sum_probs=73.6
Q ss_pred ccCCccchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCC------CceEEEeecC-------eEEEEEEcCeEE
Q 016020 271 HRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMT------PSAFIFLYEN-------QLFLTFRNRTVA 337 (396)
Q Consensus 271 ~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~------PsAFiFly~~-------qLFLTfs~gti~ 337 (396)
++=.+++|.+ ++.-|+..--.+.++++|+...++..++++...+ .+.-+|+... +|++.-=.|.++
T Consensus 44 PQWRkl~WSp-D~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~ 122 (282)
T PF15492_consen 44 PQWRKLAWSP-DCTLLAYAESTGTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLR 122 (282)
T ss_pred chheEEEECC-CCcEEEEEcCCCeEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceee
Confidence 3444588887 8999999999999999999999999988877332 3344676654 444443335444
Q ss_pred EEec-----cc--c-eeeeeccccccCCCCCCCcEEEccCCcEEEEeccCCCCCccc
Q 016020 338 VWNF-----RG--E-LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWM 386 (396)
Q Consensus 338 iWd~-----~g--e-L~t~fedh~l~~~~c~~n~~~it~~qd~ii~~~~~~~~~~~~ 386 (396)
=|-+ ++ + -.-+|..|++. =.+--+|-.+-+=|+|+.|....+..++
T Consensus 123 Sy~vs~gt~q~y~e~hsfsf~~~yp~---Gi~~~vy~p~h~LLlVgG~~~~~~~~s~ 176 (282)
T PF15492_consen 123 SYLVSVGTNQGYQENHSFSFSSHYPH---GINSAVYHPKHRLLLVGGCEQNQDGMSK 176 (282)
T ss_pred eEEEEcccCCcceeeEEEEecccCCC---ceeEEEEcCCCCEEEEeccCCCCCcccc
Confidence 4443 22 2 33367777665 3334456666677889999888654443
No 317
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.20 E-value=4.5e+02 Score=27.36 Aligned_cols=160 Identities=18% Similarity=0.236 Sum_probs=82.6
Q ss_pred EEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcceeecccCCCCeEEeeCCCCcEEEeecCCCeEE
Q 016020 132 IRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYK 211 (396)
Q Consensus 132 IrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF~~~~l~~PgfVEFDd~NgkIlt~~a~d~~Yr 211 (396)
|-+|=||...++|.+ |.-+.+ + + +|-=.+|++-..-||=- +..|.=+|+=. +|+-+..+--+...-
T Consensus 88 vS~LTynp~~rtLFa--v~n~p~-~-i------VElt~~GdlirtiPL~g---~~DpE~Ieyig-~n~fvi~dER~~~l~ 153 (316)
T COG3204 88 VSSLTYNPDTRTLFA--VTNKPA-A-I------VELTKEGDLIRTIPLTG---FSDPETIEYIG-GNQFVIVDERDRALY 153 (316)
T ss_pred ccceeeCCCcceEEE--ecCCCc-e-E------EEEecCCceEEEecccc---cCChhHeEEec-CCEEEEEehhcceEE
Confidence 667888988888888 444433 0 0 11114555422223311 66677777777 555555555555555
Q ss_pred EEeccCceEEEEecc------------CceEEEEEcC-CeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCccch
Q 016020 212 VFDLKNYTMLYSISD------------KHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDF 278 (396)
Q Consensus 212 VwdlknYs~lysIs~------------~~VqEIkiSp-g~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~i~F 278 (396)
+|.+...+..-++.. ..+--++++| +.+|++.... -|++|+-++-+...-+....+.++..-+|
T Consensus 154 ~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr---~P~~I~~~~~~~~~l~~~~~~~~~~~~~~ 230 (316)
T COG3204 154 LFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKER---NPIGIFEVTQSPSSLSVHASLDPTADRDL 230 (316)
T ss_pred EEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEcc---CCcEEEEEecCCcccccccccCcccccce
Confidence 665555543332221 4556667774 3455555444 78999988844322222222223222222
Q ss_pred hhhhcceeeEeecCCeeeEEEcccceEEEe
Q 016020 279 IEQFNEKLLVKQENENLQILDVRNAELMEV 308 (396)
Q Consensus 279 iE~~~ekLLIKQed~~L~I~Dv~~~ki~~v 308 (396)
--...+-|-..+..++|.++.=-++.++|+
T Consensus 231 f~~DvSgl~~~~~~~~LLVLS~ESr~l~Ev 260 (316)
T COG3204 231 FVLDVSGLEFNAITNSLLVLSDESRRLLEV 260 (316)
T ss_pred EeeccccceecCCCCcEEEEecCCceEEEE
Confidence 222444444444455555555555555554
No 318
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=38.34 E-value=1e+02 Score=36.32 Aligned_cols=104 Identities=15% Similarity=0.198 Sum_probs=79.0
Q ss_pred EEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCccchhhhhcce--eeEeecCCeeeEEEcccceEEEecccccCCC
Q 016020 239 MLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEK--LLVKQENENLQILDVRNAELMEVSRTEFMTP 316 (396)
Q Consensus 239 ~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~i~FiE~~~ek--LLIKQed~~L~I~Dv~~~ki~~v~~t~~~~P 316 (396)
+...+-++.....+.|| .++|++......+.|-++ ++.- -|+ |..+-|-+-+-+|.-.+.|.--|+.||.++.
T Consensus 30 fAVA~fS~er~GSVtIf-adtGEPqr~Vt~P~hatS-LCWH---pe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i 104 (1416)
T KOG3617|consen 30 FAVASFSPERGGSVTIF-ADTGEPQRDVTYPVHATS-LCWH---PEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPI 104 (1416)
T ss_pred eEEEEecCCCCceEEEE-ecCCCCCcccccceehhh-hccC---hHHHHHhhccccceeEEEecCCceeeeeccCCCCCc
Confidence 33445556667788887 578998776665655544 3322 233 3345577888899999999999999999999
Q ss_pred ceEEEeecCeEEEEEEc-CeEEEEecc--cceee
Q 016020 317 SAFIFLYENQLFLTFRN-RTVAVWNFR--GELVT 347 (396)
Q Consensus 317 sAFiFly~~qLFLTfs~-gti~iWd~~--geL~t 347 (396)
-..-|+++|...+|.-+ |++.+|-.+ |+.-+
T Consensus 105 ~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~ 138 (1416)
T KOG3617|consen 105 QGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQT 138 (1416)
T ss_pred eeEEecCCCCeEEEcCCCceeEEEEeeecccccc
Confidence 99999999999999999 999999888 76433
No 319
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=38.18 E-value=67 Score=33.82 Aligned_cols=35 Identities=11% Similarity=0.267 Sum_probs=26.8
Q ss_pred cccccCCCceEEEeecCeEEEEEEcCeEEEEeccc
Q 016020 309 SRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRG 343 (396)
Q Consensus 309 ~~t~~~~PsAFiFly~~qLFLTfs~gti~iWd~~g 343 (396)
.++|.-..-+.-|..+.|-||+.-+=.|-+|++.-
T Consensus 168 aNaH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i 202 (460)
T COG5170 168 ANAHPYHINSISFNSDKETLLSADDLRINLWNLEI 202 (460)
T ss_pred cccceeEeeeeeecCchheeeeccceeeeeccccc
Confidence 34555555666788899999999998999999863
No 320
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=36.17 E-value=1.4e+02 Score=31.09 Aligned_cols=67 Identities=21% Similarity=0.305 Sum_probs=44.4
Q ss_pred EeeCCCCcEEEeecCCCeEEEEecc-CceEEEEecc---CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEE
Q 016020 192 EFDDVNGKVLTYSAQDSIYKVFDLK-NYTMLYSISD---KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFY 267 (396)
Q Consensus 192 EFDd~NgkIlt~~a~d~~YrVwdlk-nYs~lysIs~---~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~ 267 (396)
+|+.-+-.++-+.+.|+.++.||++ .-+++++=+. -.|-.|+=|
T Consensus 172 ~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss-------------------------------- 219 (339)
T KOG0280|consen 172 KFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSS-------------------------------- 219 (339)
T ss_pred ecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecC--------------------------------
Confidence 4555555677778889999999998 5555554221 122222211
Q ss_pred eecccCCccchhhhhcceeeEeecCCeeeEEEccc
Q 016020 268 HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN 302 (396)
Q Consensus 268 ~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~ 302 (396)
+.+.-||..+.=|+.|+.||.++
T Consensus 220 ------------~~~~~~I~TGsYDe~i~~~DtRn 242 (339)
T KOG0280|consen 220 ------------PPKPTYIATGSYDECIRVLDTRN 242 (339)
T ss_pred ------------CCCCceEEEeccccceeeeehhc
Confidence 12566888999999999999986
No 321
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=35.90 E-value=2.3e+02 Score=34.57 Aligned_cols=244 Identities=14% Similarity=0.084 Sum_probs=144.8
Q ss_pred cccccccceEEEeec--c-chhhhhhccccceeeecc-------ccceEEEec--CCCCceEEEEeeecCCCeEEEEEeE
Q 016020 83 PFLMKRTKVIEIVAA--R-DIVFALAHSGVCAAFSRE-------TNRRICFLN--VSPDEVIRSLFYNKNNDSLITVSVY 150 (396)
Q Consensus 83 ~~l~~RS~V~EIv~a--~-dii~~L~~sG~c~af~~~-------t~~~ic~lN--~s~~evIrsifyN~~n~slI~vSv~ 150 (396)
...-.++.|..+... + ++.+-...-|+..+|+.. +.+-.|..- .+..++|-.++ +++++-+ |
T Consensus 1043 hL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~---~~~~~Av-~-- 1116 (1431)
T KOG1240|consen 1043 HLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCG---NGDQFAV-S-- 1116 (1431)
T ss_pred hhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEecc---CCCeEEE-E--
Confidence 334467778877766 3 567788888999999753 222233322 33444555444 3355544 1
Q ss_pred ecCCCceee------eEeeehhhhhhCCCCCCCcceeecccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEe
Q 016020 151 ASDNFSSLK------CRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI 224 (396)
Q Consensus 151 ~sd~~s~L~------cr~~~~~~i~~gk~~~~~~LF~~~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysI 224 (396)
.+|++=.+. -+.+.++..|.-+....-+ -++...+ .+++.+ -.|.|.-+-+-+-.||.+...-+.++
T Consensus 1117 t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~---vv~m~a~---~~~~~S-~~lvy~T~~~~iv~~D~r~~~~~w~l 1189 (1431)
T KOG1240|consen 1117 TKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGV---VVSMHAF---TAIVQS-HVLVYATDLSRIVSWDTRMRHDAWRL 1189 (1431)
T ss_pred cCCCeEEEEEccccccccceeeeeecccccCCCc---eEEeecc---cccccc-eeEEEEEeccceEEecchhhhhHHhh
Confidence 455521110 1111111111111100000 0111111 233323 37778888888889999988877666
Q ss_pred cc----CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCc-----cchhhhhcceeeEee--cCC
Q 016020 225 SD----KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKK-----VDFIEQFNEKLLVKQ--ENE 293 (396)
Q Consensus 225 s~----~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~-----i~FiE~~~ekLLIKQ--ed~ 293 (396)
.. --|..|.++|+=..|+.+-..+. +.+||+-=+.++-+..+. ++ .+ +++.++.++.+.... -..
T Consensus 1190 k~~~~hG~vTSi~idp~~~WlviGts~G~--l~lWDLRF~~~i~sw~~P-~~-~~i~~v~~~~~~~~~S~~vs~~~~~~n 1265 (1431)
T KOG1240|consen 1190 KNQLRHGLVTSIVIDPWCNWLVIGTSRGQ--LVLWDLRFRVPILSWEHP-AR-APIRHVWLCPTYPQESVSVSAGSSSNN 1265 (1431)
T ss_pred hcCccccceeEEEecCCceEEEEecCCce--EEEEEeecCceeecccCc-cc-CCcceEEeeccCCCCceEEEecccCCC
Confidence 65 56999999999998888888665 999999999999887754 22 22 677777777766654 577
Q ss_pred eeeEEEcccceEEEecccccCCCceEEEee------------------cCeEEEEEE--cCeEEEEeccc
Q 016020 294 NLQILDVRNAELMEVSRTEFMTPSAFIFLY------------------ENQLFLTFR--NRTVAVWNFRG 343 (396)
Q Consensus 294 ~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly------------------~~qLFLTfs--~gti~iWd~~g 343 (396)
.+-+||+.+|-+.-|..+-...|.--.++| +++=|+.-+ |..|+.||-.-
T Consensus 1266 evs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~ 1335 (1431)
T KOG1240|consen 1266 EVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTR 1335 (1431)
T ss_pred ceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCC
Confidence 899999999988877666533333333333 333343333 37888888654
No 322
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=34.13 E-value=6e+02 Score=27.05 Aligned_cols=45 Identities=16% Similarity=0.244 Sum_probs=32.1
Q ss_pred CcEEEeecCCCeEEEEeccCceEEEEeccCceEEEEEcCC-eEEEEE
Q 016020 198 GKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPG-IMLLIF 243 (396)
Q Consensus 198 gkIlt~~a~d~~YrVwdlknYs~lysIs~~~VqEIkiSpg-~~Ll~~ 243 (396)
|.+|...+.+ .+.+||..+.+.+.+|.-..|..|-||++ -++++.
T Consensus 117 G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~~vk~V~Ws~~g~~val~ 162 (443)
T PF04053_consen 117 GNLLGVKSSD-FICFYDWETGKLIRRIDVSAVKYVIWSDDGELVALV 162 (443)
T ss_dssp SSSEEEEETT-EEEEE-TTT--EEEEESS-E-EEEEE-TTSSEEEEE
T ss_pred CcEEEEECCC-CEEEEEhhHcceeeEEecCCCcEEEEECCCCEEEEE
Confidence 8888888766 79999999999999999888999999976 444444
No 323
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=34.09 E-value=1.6e+02 Score=30.15 Aligned_cols=60 Identities=13% Similarity=0.083 Sum_probs=49.0
Q ss_pred CCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEeccCceEEEEEcCCeEEEEEecC
Q 016020 186 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRS 246 (396)
Q Consensus 186 ~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~~~VqEIkiSpg~~Ll~~q~~ 246 (396)
.|=|-|-|++..+.|.+.++-.+++-|||..+..++=+..-.++--+...++-++ ++...
T Consensus 217 ~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~D~cGva~~~~~f~-~ssG~ 276 (305)
T PF07433_consen 217 GYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLPDACGVAPTDDGFL-VSSGQ 276 (305)
T ss_pred CceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccCceeeeeecCCceE-EeCCC
Confidence 5667899999667788999999999999999999999888888888888777743 44333
No 324
>PF08470 NTNH_C: Nontoxic nonhaemagglutinin C-terminal; InterPro: IPR013677 Bacteria of the Clostridium genus produce protein neurotoxins, which are complexes consisting of neurotoxin (NT), haemagglutinin (HA), nontoxic nonhaemagglutinin (NTNH), and RNA [, ]. The domain described here is found at the C terminus of the NTNH component. ; PDB: 3V0B_B 3V0A_B.
Probab=34.08 E-value=1.1e+02 Score=28.79 Aligned_cols=105 Identities=16% Similarity=0.344 Sum_probs=54.3
Q ss_pred EEeccCceEEEEEcCCeEEEEEecCCCe---eeeEEEEeecCcEEE----EEEeecccCCccchhhhhcceeeEeecCCe
Q 016020 222 YSISDKHVQEIKISPGIMLLIFNRSSSH---VPLKILSIEDGTVLK----VFYHLLHRNKKVDFIEQFNEKLLVKQENEN 294 (396)
Q Consensus 222 ysIs~~~VqEIkiSpg~~Ll~~q~~~~~---iplkIl~IetG~~l~----s~~~~L~~sk~i~FiE~~~ekLLIKQed~~ 294 (396)
|..|...+-||.=-..+-|-+-.+..-. ...|++++.-.+.-+ +-. |.-+.-...||-|..|+..
T Consensus 30 YvF~~~~l~ev~~NNniYlsinn~~Nln~q~~kfkli~~d~nKqYVqK~dEvi--------I~vL~~~EKYidis~enNr 101 (165)
T PF08470_consen 30 YVFPENPLYEVNQNNNIYLSINNTNNLNFQPVKFKLINIDPNKQYVQKWDEVI--------ISVLDDTEKYIDISSENNR 101 (165)
T ss_dssp SSSTT-BEEEEESSSSEEEEE--STT-------EEEE-S-TT--B-BTT-EEE--------EEEESSSEEEEEE--TTSB
T ss_pred EEcCCCchhhhhcCCeEEEEecCCCcceecceeeEEEeeCcchhhhhcCCeEE--------EEEecCcceEEEeecCCce
Confidence 4556666666666666666555554422 345566655443322 101 1122224567777679999
Q ss_pred eeEEEcccceEEEecccccCCCceEEEeecCeE-EEEEEcC
Q 016020 295 LQILDVRNAELMEVSRTEFMTPSAFIFLYENQL-FLTFRNR 334 (396)
Q Consensus 295 L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qL-FLTfs~g 334 (396)
+|+.|=.+....-+-.+..|.|-+..|.|.+.. .|+.+++
T Consensus 102 iqlvd~k~~a~k~iinNdiF~sNclt~~~n~ky~~ls~k~~ 142 (165)
T PF08470_consen 102 IQLVDNKNNAKKIIINNDIFISNCLTLSYNNKYISLSMKDE 142 (165)
T ss_dssp EEEES-GGG---EEEE--TT-TT-BEEEETTEEEEEEEE-S
T ss_pred EEEEecCCCceEEEEEcCeeccceEEEEECCEEEEEEEccC
Confidence 999999997777766788999999999998775 6777764
No 325
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=32.27 E-value=5.2e+02 Score=25.77 Aligned_cols=57 Identities=19% Similarity=0.387 Sum_probs=39.1
Q ss_pred cCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceE---EEEecc------CceEEEEEcC-----CeEEEEEe
Q 016020 185 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM---LYSISD------KHVQEIKISP-----GIMLLIFN 244 (396)
Q Consensus 185 l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~---lysIs~------~~VqEIkiSp-----g~~Ll~~q 244 (396)
|..|=-+-|.+ +|+++..+. .+.+++++ ++.+. +-.++. .....|.+.| +.+.+.+.
T Consensus 1 L~~P~~~a~~p-dG~l~v~e~-~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t 71 (331)
T PF07995_consen 1 LNNPRSMAFLP-DGRLLVAER-SGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYT 71 (331)
T ss_dssp ESSEEEEEEET-TSCEEEEET-TTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEE
T ss_pred CCCceEEEEeC-CCcEEEEeC-CceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEE
Confidence 56777888998 699999877 89999999 55553 445532 5568888888 55555544
No 326
>PF13970 DUF4221: Domain of unknown function (DUF4221); PDB: 3S9J_A.
Probab=32.07 E-value=2.3e+02 Score=28.05 Aligned_cols=82 Identities=20% Similarity=0.300 Sum_probs=37.9
Q ss_pred CeeeEEEcccceEEEecccccC------CCceEEEeecCeEEEEEE--cCeEEEEecccceee--eeccc--cccCCCCC
Q 016020 293 ENLQILDVRNAELMEVSRTEFM------TPSAFIFLYENQLFLTFR--NRTVAVWNFRGELVT--SFEDH--LLWHPDCN 360 (396)
Q Consensus 293 ~~L~I~Dv~~~ki~~v~~t~~~------~PsAFiFly~~qLFLTfs--~gti~iWd~~geL~t--~fedh--~l~~~~c~ 360 (396)
..|.++|+.++++.+.-+=+.. .+.++.-+.++ .||..+ ...+-+-|.+|+++- .|.++ -.|...++
T Consensus 67 ~~i~~~Dl~~~~l~~~i~~ekeGpngi~~~~~~~~~~Ds-i~l~~~~~~~~l~~~n~~G~~~~~~~~~~~~~~~~~~~~~ 145 (333)
T PF13970_consen 67 HSIDIYDLDSGKLVKKIPFEKEGPNGIGRPFGFFQNLDS-IFLFNSYAFPKLFLFNSQGEVLKKIDLEEEDLEFEPSEFP 145 (333)
T ss_dssp -EEEEEETTTTEEEEEEE-BSSSTTB-TT---EEESSST-TSEEEEGGGTEEEEE-TT--EEEEEE---TTS-------B
T ss_pred ceEEEEECCCCceeeeeeeeeECCCCccccccceEcCCc-eEEEecCCcceEEEEcCCCeEEEEEecccCcccccccccc
Confidence 6899999999999963222222 34445533344 344443 377999999997555 44444 22333344
Q ss_pred C--CcEEEccCCcEEEE
Q 016020 361 T--NNIYITSDQDLIIS 375 (396)
Q Consensus 361 ~--n~~~it~~qd~ii~ 375 (396)
. +......|..+..+
T Consensus 146 ~~~~~~~~~~~~~~~~~ 162 (333)
T PF13970_consen 146 SFSNSPIFIKDNKLYFS 162 (333)
T ss_dssp TTTTB--EEETTEEEEE
T ss_pred cccccceEeCCCeEEEe
Confidence 3 44445566665554
No 327
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=31.78 E-value=6.4e+02 Score=26.63 Aligned_cols=157 Identities=11% Similarity=0.083 Sum_probs=89.2
Q ss_pred CCeEEEEeccCce-EEEEeccCceEEEEEcCCeEEEEEecCCCee--eeEEEEeecCcEEEEEEeecccCCccchhhhhc
Q 016020 207 DSIYKVFDLKNYT-MLYSISDKHVQEIKISPGIMLLIFNRSSSHV--PLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFN 283 (396)
Q Consensus 207 d~~YrVwdlknYs-~lysIs~~~VqEIkiSpg~~Ll~~q~~~~~i--plkIl~IetG~~l~s~~~~L~~sk~i~FiE~~~ 283 (396)
-..+.+=|...|. +...-+..-+..=++||...-+.+-.-..-. -+-++++.+|+..+.+.+. .++.-.+|.+ +|
T Consensus 172 ~~~l~~~D~dg~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~-g~~~~P~fsp-DG 249 (425)
T COG0823 172 PYELALGDYDGYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFN-GNNGAPAFSP-DG 249 (425)
T ss_pred CceEEEEccCCcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccC-CccCCccCCC-CC
Confidence 3344444444444 2233333566666777666554444222223 3677888888887776632 6666799999 77
Q ss_pred ceeeEee-cCCeee--EEEcccceEEEecccccCCCceEEEeecCeEEEEEEc--C--eEEEEecccc---eeeeecccc
Q 016020 284 EKLLVKQ-ENENLQ--ILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN--R--TVAVWNFRGE---LVTSFEDHL 353 (396)
Q Consensus 284 ekLLIKQ-ed~~L~--I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~--g--ti~iWd~~ge---L~t~fedh~ 353 (396)
++|+..- .|++.. .+|+.++.+.+.-....-.. .=-|+++++-.+-.|| | -|-++|.+|. ++| +....
T Consensus 250 ~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~-~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT-~~~~~ 327 (425)
T COG0823 250 SKLAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINT-SPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLT-FSGGG 327 (425)
T ss_pred CEEEEEECCCCCccEEEEcCCCCcceecccCCcccc-CccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEee-ccCCC
Confidence 8877655 455555 55888888776322222222 3446778877555566 4 4667778883 444 22222
Q ss_pred ccCCC-CCCCcEEEc
Q 016020 354 LWHPD-CNTNNIYIT 367 (396)
Q Consensus 354 l~~~~-c~~n~~~it 367 (396)
-+.|- .++++.++-
T Consensus 328 ~~~p~~SpdG~~i~~ 342 (425)
T COG0823 328 NSNPVWSPDGDKIVF 342 (425)
T ss_pred CcCccCCCCCCEEEE
Confidence 22333 555555443
No 328
>PF09465 LBR_tudor: Lamin-B receptor of TUDOR domain; InterPro: IPR019023 The Lamin-B receptor is a chromatin and lamin binding protein in the inner nuclear membrane. It is one of the integral inner nuclear envelope membrane proteins responsible for targeting nuclear membranes to chromatin, being a downstream effector of Ran, a small Ras-like nuclear GTPase which regulates NE assembly. Lamin-B receptor interacts with importin beta, a Ran-binding protein, thereby directly contributing to the fusion of membrane vesicles and the formation of the nuclear envelope []. ; PDB: 2L8D_A 2DIG_A.
Probab=31.74 E-value=34 Score=27.01 Aligned_cols=30 Identities=37% Similarity=0.779 Sum_probs=23.5
Q ss_pred eecccCCCCeEEeeCCCCcEEEeecCCCeEEE
Q 016020 181 ESESLKWPGFVEFDDVNGKVLTYSAQDSIYKV 212 (396)
Q Consensus 181 ~~~~l~~PgfVEFDd~NgkIlt~~a~d~~YrV 212 (396)
+.++.+|||--.|=+ |+|+.|++.+..|+|
T Consensus 10 e~V~~rWP~s~lYYe--~kV~~~d~~~~~y~V 39 (55)
T PF09465_consen 10 EVVMVRWPGSSLYYE--GKVLSYDSKSDRYTV 39 (55)
T ss_dssp -EEEEE-TTTS-EEE--EEEEEEETTTTEEEE
T ss_pred CEEEEECCCCCcEEE--EEEEEecccCceEEE
Confidence 457899999999887 999999998887776
No 329
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=31.67 E-value=1e+03 Score=28.95 Aligned_cols=232 Identities=18% Similarity=0.185 Sum_probs=141.7
Q ss_pred ceEEEeeccchhhhhhccccceeeeccccceEEEecCCCCceEEEEeeec---CCCeEEEEEeEecCCCceeeeEeeehh
Q 016020 90 KVIEIVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNK---NNDSLITVSVYASDNFSSLKCRSTKIE 166 (396)
Q Consensus 90 ~V~EIv~a~dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~---~n~slI~vSv~~sd~~s~L~cr~~~~~ 166 (396)
|=.||+.+++-++.|..= |..+|+..|..+..-+-+|||+=-=+ .-..+|.| .||. .|..=.+
T Consensus 26 k~qeIv~~~~s~l~L~~~------d~~~G~l~~i~~~~vFg~Irsla~~~lt~~~kD~LaV---~SDS-----Gri~il~ 91 (1205)
T KOG1898|consen 26 KAQEIVLGRGSILELYRI------DENDGRLKTICRQEVFGTIRSLAAFRLTGGTKDYLAV---GSDS-----GRISILE 91 (1205)
T ss_pred chheEEEEeeeEEEEEEe------cCCCceEEEEEEEeehhhhhhhhccccCCCCccEEEE---EcCC-----ceEEEEE
Confidence 556889998888888754 44779999999998888999864322 22355543 2333 2222234
Q ss_pred hhhhC----CCCCCCcceee--cccCCCC-eEEeeCCCCcEEEeecCCCeEEEEec-cCceEEEEeccCceEEEEEcCCe
Q 016020 167 YIRRG----KPDSGFALFES--ESLKWPG-FVEFDDVNGKVLTYSAQDSIYKVFDL-KNYTMLYSISDKHVQEIKISPGI 238 (396)
Q Consensus 167 ~i~~g----k~~~~~~LF~~--~~l~~Pg-fVEFDd~NgkIlt~~a~d~~YrVwdl-knYs~lysIs~~~VqEIkiSpg~ 238 (396)
|+.+. ++.. .-|.. .+=..|| |++-|+ +||.+--++....--||-+ ++|+.-..||. |
T Consensus 92 y~~ek~~~~~~~q--etfGks~~rrivpG~y~~idp-~Gra~misave~~kLvyvlnrD~~a~ltisS---------p-- 157 (1205)
T KOG1898|consen 92 YNNEKNHFEKLHQ--ETFGKSGCRRIVPGQYLAIDP-KGRAVMISAVEKQKLVYVLNRDGAARLTISS---------P-- 157 (1205)
T ss_pred echhhhccccccc--cccCcccceEeccccEEEEcC-CccceeeehhhcCcEEEEEccchhhhceecC---------c--
Confidence 44332 1111 12222 3344566 889998 8998888887766666655 55555555552 1
Q ss_pred EEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCccchhhhhcceeeEeecCCeeeEEEcccceEEE-ecccccCCCc
Q 016020 239 MLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELME-VSRTEFMTPS 317 (396)
Q Consensus 239 ~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~-v~~t~~~~Ps 317 (396)
+-.-.++.+-+.+-.+++|-.-..|.- |.+.-.-.|....||-..--|..=..-.+|++.+...+ .+......-.
T Consensus 158 ---leahk~~sic~~l~~Vd~gf~np~fa~-LE~dy~~a~~d~tgeaa~~~~~~l~fYeldlglnhvvrk~s~p~~~~~n 233 (1205)
T KOG1898|consen 158 ---LEAHKAHSICLDLVGVDVGFENPIFAA-LERDYSEADNDPTGEAATMTQKVLTFYELDLGLNHVVRKASEPVNHFGN 233 (1205)
T ss_pred ---hhhccCCcEEEEEEEEeccCCCceEEE-EeechhhcccCchhhhhhccccceeEEEEecccceeEEEcccccCCCce
Confidence 001122356677788888887777763 35544444455567766666666666667887766654 4444444444
Q ss_pred eEEEeecCeE---EEEEEc-CeEEEEeccc-c-eeeeecccc
Q 016020 318 AFIFLYENQL---FLTFRN-RTVAVWNFRG-E-LVTSFEDHL 353 (396)
Q Consensus 318 AFiFly~~qL---FLTfs~-gti~iWd~~g-e-L~t~fedh~ 353 (396)
-.+-+|++.. ++.++. +.+.-.++.- . ..-.+|.|.
T Consensus 234 ~l~~VP~G~D~ps~v~vc~~n~~~y~~~~d~p~~ri~~~rr~ 275 (1205)
T KOG1898|consen 234 FLLTVPGGSDGPSGVLVCAENYLLYRNLGDHPDVRIPIERRI 275 (1205)
T ss_pred EEEEecCCCCCCcceEEecCceeeccccccCCCEEecccccc
Confidence 5677886644 566666 8888888873 3 444777774
No 330
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=31.04 E-value=7e+02 Score=26.87 Aligned_cols=81 Identities=7% Similarity=0.042 Sum_probs=49.6
Q ss_pred eEEEEeecCcEEEEEEeecccCCccchhhhhcceeeEeecCCeeeEEEcccceEEEeccc-ccCCCceEEEeecCeEEEE
Q 016020 252 LKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRT-EFMTPSAFIFLYENQLFLT 330 (396)
Q Consensus 252 lkIl~IetG~~l~s~~~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t-~~~~PsAFiFly~~qLFLT 330 (396)
|.=+|+.||+.+-......+...-. +-.-+..+++...+..|.++|..|+|.+---+. ....-+-..|..+++.|+.
T Consensus 443 l~AiD~~tGk~~W~~~~~~p~~~~~--l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~~~~a~P~ty~~~G~qYv~ 520 (527)
T TIGR03075 443 LIAWDPITGKIVWEHKEDFPLWGGV--LATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTGSGIVGPPVTYEQDGKQYVA 520 (527)
T ss_pred EEEEeCCCCceeeEecCCCCCCCcc--eEECCcEEEEECCCCeEEEEECCCCCEeEEEeCCCCceecCEEEEeCCEEEEE
Confidence 6778889998888766332221111 222455666777799999999999987752222 1222223334557888887
Q ss_pred EEcC
Q 016020 331 FRNR 334 (396)
Q Consensus 331 fs~g 334 (396)
+-.|
T Consensus 521 ~~~G 524 (527)
T TIGR03075 521 VLSG 524 (527)
T ss_pred EEec
Confidence 6543
No 331
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=30.79 E-value=49 Score=36.80 Aligned_cols=85 Identities=20% Similarity=0.325 Sum_probs=64.1
Q ss_pred hcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc-CeEEEEecccc---eeeeecc---ccc
Q 016020 282 FNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNFRGE---LVTSFED---HLL 354 (396)
Q Consensus 282 ~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~~ge---L~t~fed---h~l 354 (396)
.++-+++-..|+.+.|++ ++++.-+.-.+|....++-...||+.=.||.-. |.|++|...|- -++.+|. -.-
T Consensus 74 ~~d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~ 152 (737)
T KOG1524|consen 74 GSDTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCAR 152 (737)
T ss_pred CcceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEE
Confidence 467788888999999887 445555566778888888899999999999877 99999999994 3334443 356
Q ss_pred cCCC------CCCCcEEEc
Q 016020 355 WHPD------CNTNNIYIT 367 (396)
Q Consensus 355 ~~~~------c~~n~~~it 367 (396)
|.|+ |+.+.+||-
T Consensus 153 W~p~S~~vl~c~g~h~~IK 171 (737)
T KOG1524|consen 153 WAPNSNSIVFCQGGHISIK 171 (737)
T ss_pred ECCCCCceEEecCCeEEEe
Confidence 8887 666666653
No 332
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=30.77 E-value=93 Score=23.34 Aligned_cols=29 Identities=17% Similarity=0.473 Sum_probs=25.5
Q ss_pred EEeeCCCC--cEEEeecCCCeEEEEecc-Cce
Q 016020 191 VEFDDVNG--KVLTYSAQDSIYKVFDLK-NYT 219 (396)
Q Consensus 191 VEFDd~Ng--kIlt~~a~d~~YrVwdlk-nYs 219 (396)
+.|.+.++ ..|+..-+.+-+-|+|++ ++.
T Consensus 6 ~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~f~ 37 (43)
T PF10313_consen 6 CKFSPEPGGNDLLAWAEHQGRVHIVDTRSNFM 37 (43)
T ss_pred EEeCCCCCcccEEEEEccCCeEEEEEcccCcc
Confidence 57888788 899999999999999999 564
No 333
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=30.36 E-value=1.8e+02 Score=30.87 Aligned_cols=69 Identities=19% Similarity=0.275 Sum_probs=55.7
Q ss_pred hcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecC-----------------eEEEEEEc---CeEEEEec
Q 016020 282 FNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYEN-----------------QLFLTFRN---RTVAVWNF 341 (396)
Q Consensus 282 ~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~-----------------qLFLTfs~---gti~iWd~ 341 (396)
.+.+..+--.-+.+-++|+.++.+++|-+++-+.==+|+-..+. -|||.+=- |.+|||+.
T Consensus 318 ~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyaprRg~lEvW~~ 397 (415)
T PF14655_consen 318 SGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPRRGILEVWSM 397 (415)
T ss_pred CCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEeccCCeEEEEec
Confidence 56777777778999999999999999999998777777776644 57887754 89999999
Q ss_pred cc-ceeeeec
Q 016020 342 RG-ELVTSFE 350 (396)
Q Consensus 342 ~g-eL~t~fe 350 (396)
+. ..|+.|.
T Consensus 398 ~~g~Rv~a~~ 407 (415)
T PF14655_consen 398 RQGPRVAAFN 407 (415)
T ss_pred CCCCEEEEEE
Confidence 65 7887664
No 334
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=30.32 E-value=1e+02 Score=38.88 Aligned_cols=136 Identities=16% Similarity=0.208 Sum_probs=85.0
Q ss_pred ecCCCeEEEEeccCceEEEEecc---CceEEEEEcC-CeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCC---cc
Q 016020 204 SAQDSIYKVFDLKNYTMLYSISD---KHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNK---KV 276 (396)
Q Consensus 204 ~a~d~~YrVwdlknYs~lysIs~---~~VqEIkiSp-g~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk---~i 276 (396)
++||+.+|+|----...+|...- -.|+-++++- |=- +.-...+..|-+|.+.. ++..+- .-|+| +.
T Consensus 2226 gs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk---~~i~d~dg~l~l~q~~p-k~~~s~---qchnk~~~Df 2298 (2439)
T KOG1064|consen 2226 GSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNK---FGIVDGDGDLSLWQASP-KPYTSW---QCHNKALSDF 2298 (2439)
T ss_pred cCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCc---eeeeccCCceeecccCC-cceecc---ccCCccccce
Confidence 57799999998777777766543 4556666551 111 11111234444554441 111111 11222 24
Q ss_pred chhhhhcceeeEee---cCCeeeEEEccc-ceEEEecccccCCCceEEEeecCeEEEEEEc-CeEEEEeccc-ceeeee
Q 016020 277 DFIEQFNEKLLVKQ---ENENLQILDVRN-AELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNFRG-ELVTSF 349 (396)
Q Consensus 277 ~FiE~~~ekLLIKQ---ed~~L~I~Dv~~-~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~~g-eL~t~f 349 (396)
.|+- +-++.+| +|.|+-+||-.- ...--|+..|.--.....|.|..|||+|=.- |.|.+||.+- +|.-.|
T Consensus 2299 ~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~ 2374 (2439)
T KOG1064|consen 2299 RFIG---SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTF 2374 (2439)
T ss_pred eeee---hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHh
Confidence 5655 6667776 899999999654 4444455688888889999999999999877 9999999987 554433
No 335
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=29.81 E-value=4.4e+02 Score=26.14 Aligned_cols=108 Identities=11% Similarity=0.107 Sum_probs=77.3
Q ss_pred hcceeeEeecCCeeeEEEcccceEEE-eccc-ccCCCceEEEeecCeEEEEEEcCeEEEEec-ccceeeeecccc--ccC
Q 016020 282 FNEKLLVKQENENLQILDVRNAELME-VSRT-EFMTPSAFIFLYENQLFLTFRNRTVAVWNF-RGELVTSFEDHL--LWH 356 (396)
Q Consensus 282 ~~ekLLIKQed~~L~I~Dv~~~ki~~-v~~t-~~~~PsAFiFly~~qLFLTfs~gti~iWd~-~geL~t~fedh~--l~~ 356 (396)
-++++++.-.++.|..+|..+++.+- ..-. .....+.=++..++.+|+.=.+|.+-..|. +|+++-+++..- .|+
T Consensus 67 ~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~ 146 (370)
T COG1520 67 GDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSWDGKLYALDASTGTLVWSRNVGGSPYYA 146 (370)
T ss_pred eCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEecccceEEEEECCCCcEEEEEecCCCeEEe
Confidence 56677777677789999999988542 1111 123344445566999999999998888888 798888777776 333
Q ss_pred C--CCCCCcEEEccCCcEEEEeccCCCCCccccCC
Q 016020 357 P--DCNTNNIYITSDQDLIISYCKAEPEDQWMEGS 389 (396)
Q Consensus 357 ~--~c~~n~~~it~~qd~ii~~~~~~~~~~~~~~~ 389 (396)
. .=.+..+|+..++.-+.+.=+..+..-|..+.
T Consensus 147 ~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~ 181 (370)
T COG1520 147 SPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYET 181 (370)
T ss_pred cCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEec
Confidence 3 25688899998888888888887888787443
No 336
>PF01453 B_lectin: D-mannose binding lectin; InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]: Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity. Each bulb-type lectin domain consists of three sequential beta-sheet subdomains (I, II, III) that are inter-related by pseudo three-fold symmetry. The three subdomains are flat four-stranded, antiparrallel beta-sheets. Together they form a 12-stranded beta-barrel in which the barrel axis coincides with the pseudo 3-fold axis.; GO: 0005529 sugar binding; PDB: 3M7H_A 3M7J_B 3MEZ_D 1DLP_A 1BWU_D 1KJ1_A 1B2P_A 1XD6_A 2DPF_C 2D04_B ....
Probab=29.27 E-value=3.6e+02 Score=22.94 Aligned_cols=31 Identities=19% Similarity=0.213 Sum_probs=21.4
Q ss_pred cceeeEeecCCeeeEEEcccceEEEeccccc
Q 016020 283 NEKLLVKQENENLQILDVRNAELMEVSRTEF 313 (396)
Q Consensus 283 ~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~ 313 (396)
+.+-|+=|+|++|.++|-....+-....+..
T Consensus 19 ~~~~L~l~~dGnLvl~~~~~~~iWss~~t~~ 49 (114)
T PF01453_consen 19 GNYTLILQSDGNLVLYDSNGSVIWSSNNTSG 49 (114)
T ss_dssp TTEEEEEETTSEEEEEETTTEEEEE--S-TT
T ss_pred ccccceECCCCeEEEEcCCCCEEEEecccCC
Confidence 5688999999999999988555444434443
No 337
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=29.19 E-value=97 Score=32.43 Aligned_cols=80 Identities=21% Similarity=0.275 Sum_probs=0.0
Q ss_pred EEeeCCCCcEEEeecCCCeEEEEec-cCce-----EEEEeccCceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEE
Q 016020 191 VEFDDVNGKVLTYSAQDSIYKVFDL-KNYT-----MLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLK 264 (396)
Q Consensus 191 VEFDd~NgkIlt~~a~d~~YrVwdl-knYs-----~lysIs~~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~ 264 (396)
|+..+..-||+|-+..++.| ||-+ .+.+ -|.+|- -.+..|++||.-..+.-.+.
T Consensus 61 vdWap~snrIvtcs~drnay-Vw~~~~~~~WkptlvLlRiN-rAAt~V~WsP~enkFAVgSg------------------ 120 (361)
T KOG1523|consen 61 VDWAPKSNRIVTCSHDRNAY-VWTQPSGGTWKPTLVLLRIN-RAATCVKWSPKENKFAVGSG------------------ 120 (361)
T ss_pred EeecCCCCceeEccCCCCcc-ccccCCCCeeccceeEEEec-cceeeEeecCcCceEEeccC------------------
Q ss_pred EEEeecccCCccchhhhhcceeeEeecCCeee
Q 016020 265 VFYHLLHRNKKVDFIEQFNEKLLVKQENENLQ 296 (396)
Q Consensus 265 s~~~~L~~sk~i~FiE~~~ekLLIKQed~~L~ 296 (396)
+|.-.|++.||-|.--+.|+.+.+|+
T Consensus 121 ------ar~isVcy~E~ENdWWVsKhikkPir 146 (361)
T KOG1523|consen 121 ------ARLISVCYYEQENDWWVSKHIKKPIR 146 (361)
T ss_pred ------ccEEEEEEEecccceehhhhhCCccc
No 338
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=28.66 E-value=45 Score=31.88 Aligned_cols=59 Identities=17% Similarity=0.300 Sum_probs=43.5
Q ss_pred EeccCceEEEEeccCceEEE-EEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeeccc
Q 016020 213 FDLKNYTMLYSISDKHVQEI-KISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHR 272 (396)
Q Consensus 213 wdlknYs~lysIs~~~VqEI-kiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~ 272 (396)
|--++=+++.+++.+.+..+ .+-+|+.+.+..+. ..+|..|..|.+.+.+..+||+|+=
T Consensus 68 yGe~d~~lV~~vpr~~F~~~~~l~~G~~~~~~~~~-G~~~~~V~ev~~d~V~vD~NHPLAG 127 (196)
T PRK10737 68 YGQYDENLVQRVPKDVFMGVDELQVGMRFLAETDQ-GPVPVEITAVEDDHVVVDGNHMLAG 127 (196)
T ss_pred cCCCChHHEEEecHHHCCCccCCCCCCEEEEeCCC-CcEEEEEEEEcCCEEEEECCCcCCC
Confidence 34444556677777666544 37899887665544 4789999999999999999988764
No 339
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=28.58 E-value=1e+02 Score=30.12 Aligned_cols=53 Identities=19% Similarity=0.271 Sum_probs=36.7
Q ss_pred eEEEcccceEEEecccccCCCceEEEeecCeEEEEEEcCeEEEEeccc---ceeeee
Q 016020 296 QILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRG---ELVTSF 349 (396)
Q Consensus 296 ~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~gti~iWd~~g---eL~t~f 349 (396)
|+|+++...-+.+-..+. -|.++.-....-||++.+..+|++|++.. ++..+|
T Consensus 1 ~v~~~H~F~sQ~v~~~~~-EP~~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F 56 (215)
T PF14761_consen 1 RVYNCHPFGSQNVVPCEQ-EPTAVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTF 56 (215)
T ss_pred CeEEecccCCceeecccc-CcceeeccCCceEEEEcCCCEEEEEEcccCCCceeEEE
Confidence 356666655555444443 67787777667899998889999999984 354444
No 340
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=28.54 E-value=81 Score=31.40 Aligned_cols=62 Identities=10% Similarity=0.210 Sum_probs=40.8
Q ss_pred hcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEE----cCeEEEEeccc
Q 016020 282 FNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR----NRTVAVWNFRG 343 (396)
Q Consensus 282 ~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs----~gti~iWd~~g 343 (396)
.+.+..++|.+++++.|++.-++-...-..|.+.|-...-+-.+.-|+.++ +++++.||+..
T Consensus 113 ~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 113 DSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 566899999999999999999999987777775333333333333334333 24555555443
No 341
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=27.84 E-value=8.4e+02 Score=26.76 Aligned_cols=213 Identities=15% Similarity=0.149 Sum_probs=136.6
Q ss_pred eEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcceeecccCCCCeEEeeCCCCcEEEeecCCCeE
Q 016020 131 VIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIY 210 (396)
Q Consensus 131 vIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF~~~~l~~PgfVEFDd~NgkIlt~~a~d~~Y 210 (396)
+|-.|=+..|...| |-..|+ ++.+.-..+.+...|.-+.--|++----..==-.|||-.|-++ -+...++++
T Consensus 58 CiNAlqFS~N~~~L----~SGGDD---~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~-~SG~~~~~V 129 (609)
T KOG4227|consen 58 CINALQFSHNDRFL----ASGGDD---MHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFL-YSGERWGTV 129 (609)
T ss_pred ccceeeeccCCeEE----eecCCc---ceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeE-ecCCCccee
Confidence 44445555444444 235676 8889999888877665343334432110111147999977654 345669999
Q ss_pred EEEeccCceEEEEeccCc----eEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCc----cchhhhh
Q 016020 211 KVFDLKNYTMLYSISDKH----VQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKK----VDFIEQF 282 (396)
Q Consensus 211 rVwdlknYs~lysIs~~~----VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~----i~FiE~~ 282 (396)
..-|.++-+-||..-.++ |--+-.+|--..++.... ..-+.|||+-+..--.++.. ++-+.+ +.|-+..
T Consensus 130 I~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~--~~~V~~~D~Rd~~~~~~~~~-~AN~~~~F~t~~F~P~~ 206 (609)
T KOG4227|consen 130 IKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTR--AKLVSFIDNRDRQNPISLVL-PANSGKNFYTAEFHPET 206 (609)
T ss_pred EeeecccceeeeeecccCcccceeecccCCCCceEEEEec--CceEEEEeccCCCCCCceee-ecCCCccceeeeecCCC
Confidence 999999999999998854 777777765444444433 45677888887663222221 122111 8899989
Q ss_pred cceeeEeecCCeeeEEEcccceEEEecccc-cCCCc------eEEEeecCeEEEEEEcCeEE-EEecccc-eeeeecccc
Q 016020 283 NEKLLVKQENENLQILDVRNAELMEVSRTE-FMTPS------AFIFLYENQLFLTFRNRTVA-VWNFRGE-LVTSFEDHL 353 (396)
Q Consensus 283 ~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~-~~~Ps------AFiFly~~qLFLTfs~gti~-iWd~~ge-L~t~fedh~ 353 (396)
--.|++..+.+-..+||++....--.-... .-.|+ .-+|.+.+.-|++++-|.+- .||+.++ +-.-=-||.
T Consensus 207 P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N 286 (609)
T KOG4227|consen 207 PALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHN 286 (609)
T ss_pred ceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCC
Confidence 999999999999999999874322111010 11122 35899999999999998774 5799996 444445665
Q ss_pred c
Q 016020 354 L 354 (396)
Q Consensus 354 l 354 (396)
+
T Consensus 287 ~ 287 (609)
T KOG4227|consen 287 P 287 (609)
T ss_pred C
Confidence 5
No 342
>PRK05560 DNA gyrase subunit A; Validated
Probab=27.71 E-value=9.8e+02 Score=27.49 Aligned_cols=156 Identities=12% Similarity=0.290 Sum_probs=80.5
Q ss_pred EEeeccchhhhhhccccceeeecc-------ccceEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeeh
Q 016020 93 EIVAARDIVFALAHSGVCAAFSRE-------TNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKI 165 (396)
Q Consensus 93 EIv~a~dii~~L~~sG~c~af~~~-------t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~ 165 (396)
|.+..+++++.|++.|.-..-+.. +++-+-.+.-..+..+..++-=..++.|+++| +.=++..++.
T Consensus 493 dlI~~E~v~vllS~~GyIKri~~~~~~~~~~~~~g~~~~klKe~D~l~~~~~~~t~d~LllfT-------s~Grv~~l~v 565 (805)
T PRK05560 493 DLIPEEDVVVTLTHGGYIKRTPLDEYRAQRRGGKGVSGAKTKEDDFVEHLFVASTHDTLLFFT-------NRGRVYRLKV 565 (805)
T ss_pred hccCCCCEEEEEeCCCEEEEcchhhhhhhcccCCCccccccCCCCeeEEEEEecCCCeEEEEe-------cCCeEEEEEh
Confidence 456678999999999987765322 22223333333444555565556788888866 3446777777
Q ss_pred hhhhhCC-CCCCCcc---e---eecccCCCCeEEeeCC-CCcEEEeecCCCeEEEEeccCce-------EEEEec-cCce
Q 016020 166 EYIRRGK-PDSGFAL---F---ESESLKWPGFVEFDDV-NGKVLTYSAQDSIYKVFDLKNYT-------MLYSIS-DKHV 229 (396)
Q Consensus 166 ~~i~~gk-~~~~~~L---F---~~~~l~~PgfVEFDd~-NgkIlt~~a~d~~YrVwdlknYs-------~lysIs-~~~V 229 (396)
..|..++ ...|.++ + ..+.+. +-+-+++. .+..+..-+.+|-+|--++.+|. ...++. ++.+
T Consensus 566 ~~iP~~~~~~~G~~i~~ll~L~~~E~Iv--~~i~~~~~~~e~~lvlvTk~GyiKRi~l~~~~~~~r~G~~~ikLke~D~l 643 (805)
T PRK05560 566 YEIPEASRTARGRPIVNLLPLEPGEKIT--AILPVREFDDDKYLFFATKNGTVKKTSLSEFSNIRSNGIIAINLDEGDEL 643 (805)
T ss_pred hhCcCCCcCCCCeEHHHhcCCCCCceEE--EEEeccCCCCCCEEEEEeCCCEEEEEEhHHhhhcccCCceeeccCCCCEE
Confidence 7775543 3556654 2 222221 22223321 23334444566666666665554 233332 2444
Q ss_pred EEEEEc-CCeEEEEEecCCCeeeeEEEEe
Q 016020 230 QEIKIS-PGIMLLIFNRSSSHVPLKILSI 257 (396)
Q Consensus 230 qEIkiS-pg~~Ll~~q~~~~~iplkIl~I 257 (396)
..+..+ ++-.+++.......+-+++-+|
T Consensus 644 v~v~~~~~~d~lll~T~~Gr~~r~~~~eI 672 (805)
T PRK05560 644 IGVRLTDGDDDILLATKNGKAIRFPESDV 672 (805)
T ss_pred EEEEEeCCCCEEEEEECCCcEEEEEhhhc
Confidence 333333 3233444444444555555444
No 343
>PRK02888 nitrous-oxide reductase; Validated
Probab=27.46 E-value=9.4e+02 Score=27.34 Aligned_cols=125 Identities=11% Similarity=0.141 Sum_probs=73.0
Q ss_pred CCeEEEEeccCceEEEEeccCceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEE-------eecccCCccchh
Q 016020 207 DSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFY-------HLLHRNKKVDFI 279 (396)
Q Consensus 207 d~~YrVwdlknYs~lysIs~~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~-------~~L~~sk~i~Fi 279 (396)
.+.+.+.|..+++. ++.|.+.+..-+.-..+.+...-..-++-|.|..+.... +.+...+--++.
T Consensus 214 ~~~vSvID~etmeV--------~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~v 285 (635)
T PRK02888 214 RSLFTAVDAETMEV--------AWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAV 285 (635)
T ss_pred eEEEEEEECccceE--------EEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhh
Confidence 44555555555443 344555444444444444444444444445555444332 000000001333
Q ss_pred hhhcceeeEeecCCeeeEEEccc-----ceEEEecccccCCCceEEEeecCeEEEEEEc--CeEEEEeccc
Q 016020 280 EQFNEKLLVKQENENLQILDVRN-----AELMEVSRTEFMTPSAFIFLYENQLFLTFRN--RTVAVWNFRG 343 (396)
Q Consensus 280 E~~~ekLLIKQed~~L~I~Dv~~-----~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~--gti~iWd~~g 343 (396)
+ .|++.++ .+..+.++|.++ .+++..- .....|-..-+.+|++.+++-.. ++|.|.|++-
T Consensus 286 k-dGK~~~V--~gn~V~VID~~t~~~~~~~v~~yI-PVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k 352 (635)
T PRK02888 286 K-AGKFKTI--GGSKVPVVDGRKAANAGSALTRYV-PVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRK 352 (635)
T ss_pred h-CCCEEEE--CCCEEEEEECCccccCCcceEEEE-ECCCCccceEECCCCCEEEEeCCCCCcEEEEEChh
Confidence 3 5677777 477899999998 4555521 35567899999999998877776 8999999987
No 344
>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=27.24 E-value=59 Score=29.56 Aligned_cols=59 Identities=20% Similarity=0.282 Sum_probs=41.9
Q ss_pred eEEEEeccCceEE-EEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCccch
Q 016020 219 TMLYSISDKHVQE-IKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDF 278 (396)
Q Consensus 219 s~lysIs~~~VqE-IkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~i~F 278 (396)
+.+..++.+++.+ -..-+|..+.+..+..+.+|..|..|.+.+....+||.|+- +.+.|
T Consensus 77 ~~v~~vp~~~f~~~~~~~~G~~~~~~~~~G~~~~~~V~~i~~~~v~vD~NHPLAG-k~L~f 136 (156)
T PRK15095 77 DLIQYFSRRDFMDAGEPEIGAIMLFTAMDGSEMPGVIREINGDSITVDFNHPLAG-QTVHF 136 (156)
T ss_pred HHEEEecHHHCCcccCCCCCCEEEEECCCCCEEEEEEEEEcCCEEEEECCCcCCC-CEEEE
Confidence 3455555444432 13457877777777777899999999999999999988775 45554
No 345
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=26.95 E-value=7.3e+02 Score=25.76 Aligned_cols=181 Identities=10% Similarity=-0.019 Sum_probs=99.3
Q ss_pred eeeeEeeehhhhhhCCCCCCC-cceeecccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCce----EEEEec------
Q 016020 157 SLKCRSTKIEYIRRGKPDSGF-ALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT----MLYSIS------ 225 (396)
Q Consensus 157 ~L~cr~~~~~~i~~gk~~~~~-~LF~~~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs----~lysIs------ 225 (396)
++.|....++.+-+.....++ .-|. .-.-||=-..+-..+-=++-.-.|++.-|++-++-- ++=+++
T Consensus 61 s~g~~r~~~~~~~~rt~~i~~~~~~a--~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~ 138 (319)
T KOG4714|consen 61 SLGKGRGRCISLWERDDGIDPFKVLA--KNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASR 138 (319)
T ss_pred eeccceEEEechhhcccCcCceeeee--ccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhccccccccccc
Confidence 455666666665444443332 2333 445566666666655555555789999999877621 121222
Q ss_pred -cCceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCccchhhhhcceeeEeecCCeeeEEEcccce
Q 016020 226 -DKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE 304 (396)
Q Consensus 226 -~~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~k 304 (396)
--.-++.-.+||+-..=++.+ +++++.+--+-+..-+.-|..-.-++==+-....++.+.+|+.+-+||+++..
T Consensus 139 ~~~~~~~~i~s~~~g~~n~~d~-----~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~ 213 (319)
T KOG4714|consen 139 KICRHGNSILSGGCGNWNAQDN-----FYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVA 213 (319)
T ss_pred ceeecccEEecCCcceEeeccc-----eeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEccccc
Confidence 122233344455443333332 34444333222221111111100011122356678899999999999999973
Q ss_pred EEE-ecccccCCCceEEEee--cCeEEEEEEcCeEEEEecccc
Q 016020 305 LME-VSRTEFMTPSAFIFLY--ENQLFLTFRNRTVAVWNFRGE 344 (396)
Q Consensus 305 i~~-v~~t~~~~PsAFiFly--~~qLFLTfs~gti~iWd~~ge 344 (396)
-.- .+..|.......+|-+ -..||...-+|++=-||..+.
T Consensus 214 ~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~ 256 (319)
T KOG4714|consen 214 MPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTT 256 (319)
T ss_pred chHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCCc
Confidence 221 5567777778888866 345566666689888998873
No 346
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=26.43 E-value=1.9e+02 Score=32.68 Aligned_cols=73 Identities=16% Similarity=0.300 Sum_probs=52.2
Q ss_pred eEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEec--cCceE-EEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEE
Q 016020 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQ-EIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVF 266 (396)
Q Consensus 190 fVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs--~~~Vq-EIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~ 266 (396)
|+|.++ .--.+|+--.+|..-+-.+. ...+.+|+ +++|. +.-|.|+=-|+...-. ...++|.|+|+|..+.++
T Consensus 25 ~~ewnP-~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~k--dG~I~L~Dve~~~~l~~~ 100 (665)
T KOG4640|consen 25 RIEWNP-KMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFK--DGTIRLHDVEKGGRLVSF 100 (665)
T ss_pred EEEEcC-ccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEec--CCeEEEEEccCCCceecc
Confidence 566665 33345555556655555555 77777776 68888 9999977666666666 389999999999999984
No 347
>TIGR00038 efp translation elongation factor P. function: involved in peptide bond synthesis. stimulate efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase (by similarity). The trusted cutoff of this model is set high enough to exclude members of TIGR02178, an EFP-like protein of certain Gammaproteobacteria.
Probab=25.86 E-value=2.5e+02 Score=26.26 Aligned_cols=104 Identities=21% Similarity=0.224 Sum_probs=59.0
Q ss_pred ccCCCCeEEeeCCCCcEEEeecCCC-eEEEEeccCceEEEEeccCce------------EEEEEcCCeEEEEEecCCCee
Q 016020 184 SLKWPGFVEFDDVNGKVLTYSAQDS-IYKVFDLKNYTMLYSISDKHV------------QEIKISPGIMLLIFNRSSSHV 250 (396)
Q Consensus 184 ~l~~PgfVEFDd~NgkIlt~~a~d~-~YrVwdlknYs~lysIs~~~V------------qEIkiSpg~~Ll~~q~~~~~i 250 (396)
.+++-+-+|=-++..+-..|...|+ .|-+-|.++|+ .|+|+.+.+ -++.+=+|-.+-+..|+ .+
T Consensus 52 ~f~~~~kve~~~~e~~~~q~ly~dgd~~~fMD~etye-q~~i~~~~l~~~~~~L~eg~~v~v~~~~~~~i~v~lP~--~v 128 (184)
T TIGR00038 52 TFRSGEKVEKADVEEREMQYLYKDGDSYVFMDTETYE-QIELPKDLLGDAAKFLKENMEVSVTFYNGEPIGVELPN--FV 128 (184)
T ss_pred EeCCCCEEEcccEEeEEEEEEEECCCEEEEeCCCCcc-ceEcCHHHHHHHHhhcCCCCEEEEEEECCEEEEEECCC--EE
Confidence 3344444444444445455555544 68888999999 667777443 22233366666666666 77
Q ss_pred eeEEEEeecC-------cEEEEEEeecccCCc---cchhhhhcceeeEeecCC
Q 016020 251 PLKILSIEDG-------TVLKVFYHLLHRNKK---VDFIEQFNEKLLVKQENE 293 (396)
Q Consensus 251 plkIl~IetG-------~~l~s~~~~L~~sk~---i~FiE~~~ekLLIKQed~ 293 (396)
-++|-..+-| ...|... |.-+-. ..|++ -||+|.|.-+++
T Consensus 129 ~l~V~~t~p~~kg~t~~~~~K~A~--letG~~v~VP~fi~-~Gd~I~v~T~~g 178 (184)
T TIGR00038 129 ELEVTETEPGVKGDTASGGTKPAT--LETGAVVQVPLFIE-EGEKIKVDTRTG 178 (184)
T ss_pred EEEEEECCCCccccccCCCcccEE--EcCCCEEEeCCccc-CCCEEEEECCCC
Confidence 7777777643 1222222 122222 56888 788887766554
No 348
>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats.
Probab=25.78 E-value=8.9e+02 Score=26.34 Aligned_cols=129 Identities=18% Similarity=0.318 Sum_probs=84.3
Q ss_pred CCeEEEEeccCceEEEEecc----CceEEEEEcCCeEEEEEecCCCeeeeEEEEeec---CcEEEEEEeecccCCccchh
Q 016020 207 DSIYKVFDLKNYTMLYSISD----KHVQEIKISPGIMLLIFNRSSSHVPLKILSIED---GTVLKVFYHLLHRNKKVDFI 279 (396)
Q Consensus 207 d~~YrVwdlknYs~lysIs~----~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~Iet---G~~l~s~~~~L~~sk~i~Fi 279 (396)
.+..-|.| ++.+.+=+|.+ |.|-.+||=.+..-|+.-+. +=||-++|+.| =+.++.++.. ..=+++
T Consensus 303 ~N~lyVLD-~~L~~vG~l~~la~gE~IysvRF~Gd~~Y~VTFrq--vDPLfviDLsdP~~P~vlGeLKIP----GfS~YL 375 (521)
T PF09826_consen 303 SNNLYVLD-EDLKIVGSLEGLAPGERIYSVRFMGDRAYLVTFRQ--VDPLFVIDLSDPANPKVLGELKIP----GFSDYL 375 (521)
T ss_pred eEEEEEEC-CCCcEeEEccccCCCceEEEEEEeCCeEEEEEEee--cCceEEEECCCCCCCceeeEEECc----cchhce
Confidence 44555556 66666666665 89999999988888877666 67999999998 6777788832 233344
Q ss_pred hhhcceee--EeecCCe-----------eeEEEccc----ceEEEecc-------cccCCCceEEEeecCeEE-EEEE--
Q 016020 280 EQFNEKLL--VKQENEN-----------LQILDVRN----AELMEVSR-------TEFMTPSAFIFLYENQLF-LTFR-- 332 (396)
Q Consensus 280 E~~~ekLL--IKQed~~-----------L~I~Dv~~----~ki~~v~~-------t~~~~PsAFiFly~~qLF-LTfs-- 332 (396)
-..+|..| |+++... |.++||.+ .++-+... +....++||.|..+.+|| |-++
T Consensus 376 HP~~e~~LlGiG~~~~~~~~~~~~~GlKisLFDVSD~~~P~e~~~~~iG~~~s~S~a~~dhkAfl~~~~~~ll~~Pv~~~ 455 (521)
T PF09826_consen 376 HPYDENHLLGIGKDTDEDEGTGWTQGLKISLFDVSDPANPKELDKEVIGDRGSYSEALYDHKAFLFDKEKNLLAFPVSSS 455 (521)
T ss_pred eECCCCeEEEEcccCcccccccccceeEEEEEecCCCCCccEeEEEEcCCCCccCccccCceEEEEeCCCCEEEEEEEEc
Confidence 44455555 4555444 67799987 33333211 223457899999999884 4555
Q ss_pred -----cCeEEEEecc
Q 016020 333 -----NRTVAVWNFR 342 (396)
Q Consensus 333 -----~gti~iWd~~ 342 (396)
..-.-+++++
T Consensus 456 ~~~~~~~g~~v~~i~ 470 (521)
T PF09826_consen 456 YGYFNFQGAYVFSID 470 (521)
T ss_pred cCccccceEEEEEEe
Confidence 1455566666
No 349
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=25.30 E-value=7.5e+02 Score=25.37 Aligned_cols=138 Identities=17% Similarity=0.228 Sum_probs=77.6
Q ss_pred EEEeecCCCeEEEEe--ccCceEEEEecc-----CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCc------EEEEE
Q 016020 200 VLTYSAQDSIYKVFD--LKNYTMLYSISD-----KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGT------VLKVF 266 (396)
Q Consensus 200 Ilt~~a~d~~YrVwd--lknYs~lysIs~-----~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~------~l~s~ 266 (396)
++.|+.+-..|.|=. .+.|+..++++- ..|..+...|++.||+-.+.+.. ++|. .|...
T Consensus 114 vi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~--------~~~~s~a~~~GLtaW 185 (282)
T PF15492_consen 114 VINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN--------QDGMSKASSCGLTAW 185 (282)
T ss_pred EEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC--------CCccccccccCceEE
Confidence 466888888898843 467887666554 68999999999998887777543 2222 23333
Q ss_pred EeecccCCccchhhhhcceee-EeecCCeeeEEEcccceEEEecccccCCCceEEE----eecCeEEEEEEc-CeEEEEe
Q 016020 267 YHLLHRNKKVDFIEQFNEKLL-VKQENENLQILDVRNAELMEVSRTEFMTPSAFIF----LYENQLFLTFRN-RTVAVWN 340 (396)
Q Consensus 267 ~~~L~~sk~i~FiE~~~ekLL-IKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiF----ly~~qLFLTfs~-gti~iWd 340 (396)
+.+-..--..+ ....++.+- ..+....+++ .+.+..- +-. ...-.|| +|++++.+++.= |++.+|+
T Consensus 186 RiL~~~Pyyk~-v~~~~~~~~~~~~~~~~~~~---~~~~~fs--~~~--~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~ 257 (282)
T PF15492_consen 186 RILSDSPYYKQ-VTSSEDDITASSKRRGLLRI---PSFKFFS--RQG--QEQDGIFKMSLSPDGSLLACIHFSGSLSLWE 257 (282)
T ss_pred EEcCCCCcEEE-ccccCccccccccccceeec---cceeeee--ccc--cCCCceEEEEECCCCCEEEEEEcCCeEEEEe
Confidence 32111100011 112333332 1223333332 2222221 011 1123344 789999999987 9999999
Q ss_pred ccc-ceeeeecccc
Q 016020 341 FRG-ELVTSFEDHL 353 (396)
Q Consensus 341 ~~g-eL~t~fedh~ 353 (396)
+-+ .+......+.
T Consensus 258 iPsL~~~~~W~~~e 271 (282)
T PF15492_consen 258 IPSLRLQRSWKQDE 271 (282)
T ss_pred cCcchhhcccchhh
Confidence 988 6666555443
No 350
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.17 E-value=1.7e+02 Score=34.98 Aligned_cols=59 Identities=15% Similarity=0.125 Sum_probs=45.3
Q ss_pred EEEeecCcEEEEEEeecccCCccchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEee
Q 016020 254 ILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLY 323 (396)
Q Consensus 254 Il~IetG~~l~s~~~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly 323 (396)
+++-+.+.+..++. |. +.|.-++.+=-++-+.+||+.+++++++...+..+-.+.+|+-
T Consensus 124 ~~ne~v~~~Vtsva----------fn-~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~ 182 (1206)
T KOG2079|consen 124 HQNERVQGPVTSVA----------FN-QDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVG 182 (1206)
T ss_pred hcCCccCCcceeeE----------ec-CCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEE
Confidence 55555555555555 33 3888888888999999999999999998888887777877753
No 351
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=25.15 E-value=9.1e+02 Score=28.07 Aligned_cols=126 Identities=17% Similarity=0.223 Sum_probs=76.8
Q ss_pred eeeeEEEEeecCcEEEEEEeecccCCc-cch------hhhhcceeeEeecCCeeeEEEcccce--EEEecccc-cCC---
Q 016020 249 HVPLKILSIEDGTVLKVFYHLLHRNKK-VDF------IEQFNEKLLVKQENENLQILDVRNAE--LMEVSRTE-FMT--- 315 (396)
Q Consensus 249 ~iplkIl~IetG~~l~s~~~~L~~sk~-i~F------iE~~~ekLLIKQed~~L~I~Dv~~~k--i~~v~~t~-~~~--- 315 (396)
.-.|.-+|||+|+++-..+. +.... .+| -+..+|.-+++=.+..|--||.|-+. +.. ...+ +-+
T Consensus 503 ~~~ly~mDLe~GKVV~eW~~--~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~-~~~k~Y~~~~~ 579 (794)
T PF08553_consen 503 PNKLYKMDLERGKVVEEWKV--HDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVD-SQSKQYSSKNN 579 (794)
T ss_pred CCceEEEecCCCcEEEEeec--CCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceee-ccccccccCCC
Confidence 34578899999999887662 22111 233 33467899999999999999999743 331 1111 111
Q ss_pred CceEEEeecCeEEEEEEc-CeEEEEeccc-ceeeee---ccccccCCCCCCCcEEEccCCcEEEEecc
Q 016020 316 PSAFIFLYENQLFLTFRN-RTVAVWNFRG-ELVTSF---EDHLLWHPDCNTNNIYITSDQDLIISYCK 378 (396)
Q Consensus 316 PsAFiFly~~qLFLTfs~-gti~iWd~~g-eL~t~f---edh~l~~~~c~~n~~~it~~qd~ii~~~~ 378 (396)
=+++ ...+++-++.-|. |.|++||.-| .-+|.| -+-+.-..-+.|++..++..+--|+=+|-
T Consensus 580 Fs~~-aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t 646 (794)
T PF08553_consen 580 FSCF-ATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLIDT 646 (794)
T ss_pred ceEE-EecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEEE
Confidence 1222 2334444444444 9999999888 445544 33333334477778777777776666664
No 352
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=24.18 E-value=4.6e+02 Score=27.35 Aligned_cols=95 Identities=11% Similarity=0.061 Sum_probs=64.2
Q ss_pred ceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc-CeEEEEeccc--c-----eeeeecccccc
Q 016020 284 EKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNFRG--E-----LVTSFEDHLLW 355 (396)
Q Consensus 284 ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~~g--e-----L~t~fedh~l~ 355 (396)
.-|+|...|..+|+.+|..+-.....-....+.-.....+++.+..++-+ +-|-.|..+- | .++.=+||-.+
T Consensus 129 ~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~ 208 (344)
T KOG4532|consen 129 FPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFY 208 (344)
T ss_pred cceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCcee
Confidence 34777888888888888664433321111122345556778888888877 7777777665 3 23366788888
Q ss_pred CCCCCCCcEEEccCCcEEEEecc
Q 016020 356 HPDCNTNNIYITSDQDLIISYCK 378 (396)
Q Consensus 356 ~~~c~~n~~~it~~qd~ii~~~~ 378 (396)
+...-+|-.|-+..||=-.|-+.
T Consensus 209 ~S~s~~~~~FAv~~Qdg~~~I~D 231 (344)
T KOG4532|consen 209 NSFSENDLQFAVVFQDGTCAIYD 231 (344)
T ss_pred eeeccCcceEEEEecCCcEEEEE
Confidence 88888999999999996555443
No 353
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.05 E-value=2.6e+02 Score=31.70 Aligned_cols=113 Identities=15% Similarity=0.281 Sum_probs=73.2
Q ss_pred cccCCccchh-hhhcce-eeEeecCCeeeEEEccc-------ceEEEecccccCCCceEEEeecCeEEEEEEcCeEEEEe
Q 016020 270 LHRNKKVDFI-EQFNEK-LLVKQENENLQILDVRN-------AELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWN 340 (396)
Q Consensus 270 L~~sk~i~Fi-E~~~ek-LLIKQed~~L~I~Dv~~-------~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~gti~iWd 340 (396)
.+|+.+|.=+ ...||. .+....|+.++.|.++. +-|.-+-..|.-+.-..-|+.+.. +++..+|.|-+||
T Consensus 732 ~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr-~i~ScD~giHlWD 810 (1034)
T KOG4190|consen 732 TGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR-SIASCDGGIHLWD 810 (1034)
T ss_pred cCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc-eeeeccCcceeec
Confidence 3555554333 233444 45567999999999875 345556666777777777776654 5666789999999
Q ss_pred -cccceeeeeccccccCCC--CCCCcEEEcc-CCcEEEEeccCCCCCcccc
Q 016020 341 -FRGELVTSFEDHLLWHPD--CNTNNIYITS-DQDLIISYCKAEPEDQWME 387 (396)
Q Consensus 341 -~~geL~t~fedh~l~~~~--c~~n~~~it~-~qd~ii~~~~~~~~~~~~~ 387 (396)
|.|.+... .+|+|- ..+|.--+-+ |.-++|..|.+++.-...+
T Consensus 811 PFigr~Laq----~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~D 857 (1034)
T KOG4190|consen 811 PFIGRLLAQ----MEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFD 857 (1034)
T ss_pred ccccchhHh----hhcCcccCCCceeEecccCcchheeeeccchhhheeee
Confidence 56665553 445554 3344444444 7889999999887644333
No 354
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=23.94 E-value=7.6e+02 Score=24.92 Aligned_cols=188 Identities=16% Similarity=0.208 Sum_probs=0.0
Q ss_pred eEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcceeecccCCCCeEEeeCCCCcEEEeecC----------------
Q 016020 143 SLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQ---------------- 206 (396)
Q Consensus 143 slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF~~~~l~~PgfVEFDd~NgkIlt~~a~---------------- 206 (396)
++-+|-.|.+|+ .+-+-=.+++..|.+.+++=+...-+|+ .+|..+|+++..-.-
T Consensus 32 ~~~vv~~ypHd~----~aFTQGL~~~~~g~LyESTG~yG~S~l~-----~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l 102 (264)
T PF05096_consen 32 SYEVVETYPHDP----TAFTQGLEFLDDGTLYESTGLYGQSSLR-----KVDLETGKVLQSVPLPPRYFGEGITILGDKL 102 (264)
T ss_dssp EEEEEEEEE--T----T-EEEEEEEEETTEEEEEECSTTEEEEE-----EEETTTSSEEEEEE-TTT--EEEEEEETTEE
T ss_pred eeEEEEECCCCC----cccCccEEecCCCEEEEeCCCCCcEEEE-----EEECCCCcEEEEEECCccccceeEEEECCEE
Q ss_pred ------CCeEEEEeccCceEEEEecc-CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEE-----eecccCC
Q 016020 207 ------DSIYKVFDLKNYTMLYSISD-KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFY-----HLLHRNK 274 (396)
Q Consensus 207 ------d~~YrVwdlknYs~lysIs~-~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~-----~~L~~sk 274 (396)
++.--+||.++.+.+-+++= -+=|-+. ++|-.|..+.+. =-|..+|-+|.+.+.++. ..+..-+
T Consensus 103 ~qLTWk~~~~f~yd~~tl~~~~~~~y~~EGWGLt-~dg~~Li~SDGS---~~L~~~dP~~f~~~~~i~V~~~g~pv~~LN 178 (264)
T PF05096_consen 103 YQLTWKEGTGFVYDPNTLKKIGTFPYPGEGWGLT-SDGKRLIMSDGS---SRLYFLDPETFKEVRTIQVTDNGRPVSNLN 178 (264)
T ss_dssp EEEESSSSEEEEEETTTTEEEEEEE-SSS--EEE-ECSSCEEEE-SS---SEEEEE-TTT-SEEEEEE-EETTEE---EE
T ss_pred EEEEecCCeEEEEccccceEEEEEecCCcceEEE-cCCCEEEEECCc---cceEEECCcccceEEEEEEEECCEECCCcE
Q ss_pred ccchhhhhcceeeEee-cCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEcCeEEEEeccc-ceeeeeccc
Q 016020 275 KVDFIEQFNEKLLVKQ-ENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRG-ELVTSFEDH 352 (396)
Q Consensus 275 ~i~FiE~~~ekLLIKQ-ed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~gti~iWd~~g-eL~t~fedh 352 (396)
+++++ +.+|+--. .-..|-.+|..||+.. .++|+++ --.......
T Consensus 179 ELE~i---~G~IyANVW~td~I~~Idp~tG~V~------------------------------~~iDls~L~~~~~~~~~ 225 (264)
T PF05096_consen 179 ELEYI---NGKIYANVWQTDRIVRIDPETGKVV------------------------------GWIDLSGLRPEVGRDKS 225 (264)
T ss_dssp EEEEE---TTEEEEEETTSSEEEEEETTT-BEE------------------------------EEEE-HHHHHHHTSTTS
T ss_pred eEEEE---cCEEEEEeCCCCeEEEEeCCCCeEE------------------------------EEEEhhHhhhccccccc
Q ss_pred cccCCCCCCCcEEEccCCcEEEEe
Q 016020 353 LLWHPDCNTNNIYITSDQDLIISY 376 (396)
Q Consensus 353 ~l~~~~c~~n~~~it~~qd~ii~~ 376 (396)
.....+.-++.+|...++-+.|-+
T Consensus 226 ~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 226 RQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp T--TTS-EEEEEEETTTTEEEEEE
T ss_pred ccccCCeeEeEeEeCCCCEEEEEe
No 355
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=23.68 E-value=7.1e+02 Score=29.84 Aligned_cols=132 Identities=9% Similarity=0.014 Sum_probs=78.9
Q ss_pred cCCCeEEEEeccCce--EEEEeccCceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCccchhhhh
Q 016020 205 AQDSIYKVFDLKNYT--MLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQF 282 (396)
Q Consensus 205 a~d~~YrVwdlknYs--~lysIs~~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~i~FiE~~ 282 (396)
..+...-.+|+.+-+ ..+.+++-.|.=||= ++-. ++...+ ...+.+.|.-+-+.+++|+ +|+.-|-=+.+.
T Consensus 154 g~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~-Nnr~-lf~G~t--~G~V~LrD~~s~~~iht~~---aHs~siSDfDv~ 226 (1118)
T KOG1275|consen 154 GLQEKLIHIDLNTEKETRTTNVSASGVTIMRY-NNRN-LFCGDT--RGTVFLRDPNSFETIHTFD---AHSGSISDFDVQ 226 (1118)
T ss_pred chhhheeeeecccceeeeeeeccCCceEEEEe-cCcE-EEeecc--cceEEeecCCcCceeeeee---ccccceeeeecc
Confidence 345556666666665 455555433322221 2222 222333 3667777888888888888 676664444556
Q ss_pred cceeeEe---------ecCCeeeEEEcccceEE-EecccccCCCceEEEeecCeEEEEEEcCeEEEEeccc
Q 016020 283 NEKLLVK---------QENENLQILDVRNAELM-EVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRG 343 (396)
Q Consensus 283 ~ekLLIK---------Qed~~L~I~Dv~~~ki~-~v~~t~~~~PsAFiFly~~qLFLTfs~gti~iWd~~g 343 (396)
|+.|+.= .-|.=|++||+++=+.+ -+.=....+---|+=++..++-|+.++|.+.+=|..+
T Consensus 227 GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~ 297 (1118)
T KOG1275|consen 227 GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTAT 297 (1118)
T ss_pred CCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeeccccc
Confidence 7766642 24667899999984433 2322222222334447799999999999998887544
No 356
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=23.57 E-value=2.1e+02 Score=28.37 Aligned_cols=51 Identities=8% Similarity=0.128 Sum_probs=41.8
Q ss_pred CCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEcCeEEEEeccc
Q 016020 292 NENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRG 343 (396)
Q Consensus 292 d~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~gti~iWd~~g 343 (396)
...+-|||+.++++..+..+ ........++|+++..+-++++-+-+++..+
T Consensus 22 ~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~ 72 (353)
T PF00930_consen 22 KGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVRDNNLYLRDLAT 72 (353)
T ss_dssp EEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEETTEEEEESSTT
T ss_pred ceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEecCceEEEECCC
Confidence 34688999999999998777 6677888999999999999999999998765
No 357
>PRK03999 translation initiation factor IF-5A; Provisional
Probab=23.42 E-value=5.3e+02 Score=22.94 Aligned_cols=81 Identities=19% Similarity=0.228 Sum_probs=55.1
Q ss_pred eeeeEEEEeecCcEEEEEEeecccCCccchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEE
Q 016020 249 HVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLF 328 (396)
Q Consensus 249 ~iplkIl~IetG~~l~s~~~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLF 328 (396)
.+-+++-+|.||+.+-. .+.=..+-+..++| ..++.++-++|+.+...|..|.+.+.++... .+--|+-++.
T Consensus 41 ~vr~k~knL~tG~~~e~-~~~s~d~~e~~~ve-~~~~qylY~dg~~~~fMd~eTyeq~~i~~~~----d~~~~l~eg~-- 112 (129)
T PRK03999 41 KARIVAIGIFDGQKRSL-VQPVDAKVEVPIIE-KKTGQVLSIMGDVVQLMDLETYETFEIPIPE----ELKDKLEPGV-- 112 (129)
T ss_pred EEEEEEEECCCCCEEEE-EecCCCceeeeeEE-eEEEEEEEecCCEEEEecCCCceEEEecCCh----hHHhhCcCCC--
Confidence 47889999999986543 22212222455666 7888899999999999999999988887661 1334455544
Q ss_pred EEEEcCeEEEEeccc
Q 016020 329 LTFRNRTVAVWNFRG 343 (396)
Q Consensus 329 LTfs~gti~iWd~~g 343 (396)
.|.+|..-|
T Consensus 113 ------~v~v~~~~g 121 (129)
T PRK03999 113 ------EVEYWEAMG 121 (129)
T ss_pred ------EEEEEhhCC
Confidence 355666556
No 358
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=23.41 E-value=1.8e+02 Score=30.39 Aligned_cols=65 Identities=12% Similarity=0.126 Sum_probs=40.4
Q ss_pred eeeEEEEeecCcEEEEEEeecccCCccchhhhhcceeeEe--ecCCeeeEEEcccceEEEecccccCCC
Q 016020 250 VPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVK--QENENLQILDVRNAELMEVSRTEFMTP 316 (396)
Q Consensus 250 iplkIl~IetG~~l~s~~~~L~~sk~i~FiE~~~ekLLIK--Qed~~L~I~Dv~~~ki~~v~~t~~~~P 316 (396)
-.+=.+|..|++.+..+.+- +....|+-.+ ..+=+|+. .+++.|.|||..|+|.++.-+.-...|
T Consensus 269 teVWv~D~~t~krv~Ri~l~-~~~~Si~Vsq-d~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~lG~~~ 335 (342)
T PF06433_consen 269 TEVWVYDLKTHKRVARIPLE-HPIDSIAVSQ-DDKPLLYALSAGDGTLDVYDAATGKLVRSIEQLGETP 335 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEE-EEESEEEEES-SSS-EEEEEETTTTEEEEEETTT--EEEEE---SSS-
T ss_pred eEEEEEECCCCeEEEEEeCC-CccceEEEcc-CCCcEEEEEcCCCCeEEEEeCcCCcEEeehhccCCCc
Confidence 34557788899999987732 3334577655 44445543 467899999999999998766655544
No 359
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=23.12 E-value=3.9e+02 Score=28.62 Aligned_cols=97 Identities=21% Similarity=0.296 Sum_probs=65.3
Q ss_pred eeeEeeehhhhhhCCCCCCCcceeecccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEec---c------Cc
Q 016020 158 LKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS---D------KH 228 (396)
Q Consensus 158 L~cr~~~~~~i~~gk~~~~~~LF~~~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs---~------~~ 228 (396)
|+|| .+|+-....-||-.-++..=.-..|++ .+ |-++.-++.+++||++--++=.++. + -.
T Consensus 281 LR~r-------nqG~~~~a~rlyh~Ssvtslq~Lq~s~--q~-LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l 350 (425)
T KOG2695|consen 281 LRCR-------NQGNGWCAQRLYHDSSVTSLQILQFSQ--QK-LMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYL 350 (425)
T ss_pred eeec-------ccCCCcceEEEEcCcchhhhhhhcccc--ce-EeeccCcCceeEeeehhhhcccceeeeeccccccccc
Confidence 6676 566666666677776666666667776 44 4456679999999999888733222 1 11
Q ss_pred eEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEe
Q 016020 229 VQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYH 268 (396)
Q Consensus 229 VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~ 268 (396)
-.-|+=+.|+++. ...+-+.+||++.+|..+-++.+
T Consensus 351 ~~~v~~eeg~I~s----~GdDcytRiWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 351 PAHVKEEEGSIFS----VGDDCYTRIWSLDSGHLLCTIPF 386 (425)
T ss_pred ccccccccceEEE----ccCeeEEEEEecccCceeeccCC
Confidence 1223445666643 44589999999999999887764
No 360
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=23.12 E-value=4.5e+02 Score=31.73 Aligned_cols=144 Identities=18% Similarity=0.305 Sum_probs=82.7
Q ss_pred CCcEEEeecCCCeEEEEeccCceEEEEeccCceEEEEEcCCeEEEEEecCCC-----eeeeEEEEeecCcEEEEEEeecc
Q 016020 197 NGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRSSS-----HVPLKILSIEDGTVLKVFYHLLH 271 (396)
Q Consensus 197 NgkIlt~~a~d~~YrVwdlknYs~lysIs~~~VqEIkiSpg~~Ll~~q~~~~-----~iplkIl~IetG~~l~s~~~~L~ 271 (396)
..+-+++...|+..|+-.|..+-+|-.+|-+.+.+. |..++++.-++.. ++.|. -++++|-.+..-.
T Consensus 599 rsrfla~a~~d~~vriisL~p~d~l~~ls~q~l~~~---~~s~~iv~~~~~~~~~~~~L~l~-~GL~NGvllR~~i---- 670 (1205)
T KOG1898|consen 599 RSRFLALASVDNMVRIISLDPSDCLQPLSVQGLSSP---PESLCIVEMEATGGTDVAQLYLL-IGLRNGVLLRFVI---- 670 (1205)
T ss_pred hcceeeeeccccceeEEEecCcceEEEccccccCCC---ccceEEEEecccCCccceeEEEE-ecccccEEEEEEe----
Confidence 345677778899999999999999999986555443 3444444444421 11111 1233332222100
Q ss_pred cCCccchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEE-eecCeEEEEEEcCeEEEEecccc--eee-
Q 016020 272 RNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIF-LYENQLFLTFRNRTVAVWNFRGE--LVT- 347 (396)
Q Consensus 272 ~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiF-ly~~qLFLTfs~gti~iWd~~ge--L~t- 347 (396)
+ .+.| ++.|++|+.+-- -+++-|-| ..+....|..|++.-..|+.+.+ +..
T Consensus 671 -----d--~v~G------------~l~d~rtR~lG~------~pvkLf~~~~~~~s~vL~lSsr~wl~y~~~~~~h~t~I 725 (1205)
T KOG1898|consen 671 -----D--TVTG------------QLLDIRTRFLGL------RPVKLFPISMRGQSDVLALSSRPWLLYTYQQEFHLTPI 725 (1205)
T ss_pred -----c--cccc------------ceeeeheeeecc------ccceEEEEeecCcceeEEecCChhhhhhhcceeeeecc
Confidence 0 0001 445555555432 22333322 34566789999999999999995 555
Q ss_pred eeccccccCCC-----CCCCcEEEccCCcEEE
Q 016020 348 SFEDHLLWHPD-----CNTNNIYITSDQDLII 374 (396)
Q Consensus 348 ~fedh~l~~~~-----c~~n~~~it~~qd~ii 374 (396)
+++ -+-|+.- ||++..+|+.+-==||
T Consensus 726 sy~-~l~~as~~~S~qcpeGiv~i~~n~l~i~ 756 (1205)
T KOG1898|consen 726 SYS-TLEHASPFCSEQCPEGIVAISKNTLRII 756 (1205)
T ss_pred ccc-chhccccccccCCCcchhhhhhhhhhee
Confidence 333 4444332 9999999988754444
No 361
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.47 E-value=9.3e+02 Score=26.99 Aligned_cols=114 Identities=16% Similarity=0.255 Sum_probs=60.8
Q ss_pred CCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCccchhhhhcceeeEeecCCeeeEEEc---c-----cceEEE
Q 016020 236 PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDV---R-----NAELME 307 (396)
Q Consensus 236 pg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv---~-----~~ki~~ 307 (396)
+|..=....+++.++|+....+..| ++.+++ |.. ++.-|.++..+..++.++- - +.++.
T Consensus 43 ggatgvvvkgpndDVpiSfdm~d~G-~I~SIk----------FSl-DnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck- 109 (657)
T KOG2377|consen 43 GGATGVVVKGPNDDVPISFDMDDKG-EIKSIK----------FSL-DNKILAVQRTSKTVDFCNFIPDNSQLEYTQECK- 109 (657)
T ss_pred CCeeEEEEeCCCCCCCceeeecCCC-ceeEEE----------ecc-CcceEEEEecCceEEEEecCCCchhhHHHHHhc-
Confidence 4444445555556777777666666 666655 222 4444444444444444443 1 11221
Q ss_pred ecccccCCCceEEEeecCeEEEEEEcCeEEEEecccc-----eeeeeccccccCCCCCCCcEEE
Q 016020 308 VSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGE-----LVTSFEDHLLWHPDCNTNNIYI 366 (396)
Q Consensus 308 v~~t~~~~PsAFiFly~~qLFLTfs~gti~iWd~~ge-----L~t~fedh~l~~~~c~~n~~~i 366 (396)
+.....-.|..+...++ --+++.-+++|....+ +|.+..--+-|---|++-++.+
T Consensus 110 ---~k~~~IlGF~W~~s~e~-A~i~~~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~L 169 (657)
T KOG2377|consen 110 ---TKNANILGFCWTSSTEI-AFITDQGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVIL 169 (657)
T ss_pred ---cCcceeEEEEEecCeeE-EEEecCCeEEEEEchhhhhhhhhhhcccCccEEEEccccceEe
Confidence 22223345555555443 3345667888888874 5555555566665566655544
No 362
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=21.50 E-value=1.4e+02 Score=19.11 Aligned_cols=25 Identities=20% Similarity=0.355 Sum_probs=21.1
Q ss_pred cceeeEeecCCeeeEEEcccceEEE
Q 016020 283 NEKLLVKQENENLQILDVRNAELME 307 (396)
Q Consensus 283 ~ekLLIKQed~~L~I~Dv~~~ki~~ 307 (396)
+..+++...++.|..+|..+|+++-
T Consensus 6 ~~~v~~~~~~g~l~a~d~~~G~~~W 30 (33)
T smart00564 6 DGTVYVGSTDGTLYALDAKTGEILW 30 (33)
T ss_pred CCEEEEEcCCCEEEEEEcccCcEEE
Confidence 4478888889999999999998763
No 363
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=21.27 E-value=1.6e+02 Score=20.23 Aligned_cols=24 Identities=17% Similarity=0.281 Sum_probs=20.8
Q ss_pred eeeEeecCCeeeEEEcccceEEEe
Q 016020 285 KLLVKQENENLQILDVRNAELMEV 308 (396)
Q Consensus 285 kLLIKQed~~L~I~Dv~~~ki~~v 308 (396)
.+++.+.++.|..+|..|||++=-
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~ 25 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWK 25 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEE
T ss_pred EEEEeCCCCEEEEEECCCCCEEEe
Confidence 577889999999999999998753
No 364
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=21.14 E-value=9.6e+02 Score=25.07 Aligned_cols=137 Identities=16% Similarity=0.243 Sum_probs=85.9
Q ss_pred eeEEEEeecCcEEEEEEee--cccCCccchhhhhcceeeEeecCCeeeEEEcccceEEE---ecccccCCCceEEEeecC
Q 016020 251 PLKILSIEDGTVLKVFYHL--LHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELME---VSRTEFMTPSAFIFLYEN 325 (396)
Q Consensus 251 plkIl~IetG~~l~s~~~~--L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~---v~~t~~~~PsAFiFly~~ 325 (396)
-|-.++..||+..-.|... +.-..-++| .+..|+++.+|+++-.+|.++..++- ..-+.|..| .|..-++
T Consensus 74 ~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~---~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP--~i~~g~~ 148 (354)
T KOG4649|consen 74 GLYFLCVKTGSQIWNFVILETVKVRAQCDF---DGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSP--VIAPGDG 148 (354)
T ss_pred cEEEEEecchhheeeeeehhhhccceEEcC---CCceEEEecCCCcEEEecccccceEEecccCCceeccc--eecCCCc
Confidence 3556778888555544421 112222454 67899999999999999999977654 222333333 4455577
Q ss_pred eEEEEEEcCeEEEEeccc----c-eeeeeccccccCCCCCCCcEEEccCCcEEEEeccCCCCCccccCCCcce
Q 016020 326 QLFLTFRNRTVAVWNFRG----E-LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSGNSF 393 (396)
Q Consensus 326 qLFLTfs~gti~iWd~~g----e-L~t~fedh~l~~~~c~~n~~~it~~qd~ii~~~~~~~~~~~~~~~~~~~ 393 (396)
.||++.-.|.+.-=+-.. + -+.+.+.-+.-.|.|..-.+.||.-.-.++|+= ..+..-|--.|.|.|
T Consensus 149 sly~a~t~G~vlavt~~~~~~~~~w~~~~~~PiF~splcv~~sv~i~~VdG~l~~f~-~sG~qvwr~~t~GpI 220 (354)
T KOG4649|consen 149 SLYAAITAGAVLAVTKNPYSSTEFWAATRFGPIFASPLCVGSSVIITTVDGVLTSFD-ESGRQVWRPATKGPI 220 (354)
T ss_pred eEEEEeccceEEEEccCCCCcceehhhhcCCccccCceeccceEEEEEeccEEEEEc-CCCcEEEeecCCCce
Confidence 777777665433222111 1 122444555556779999999988888888887 344666777777765
No 365
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=21.10 E-value=1.5e+02 Score=29.96 Aligned_cols=59 Identities=14% Similarity=0.188 Sum_probs=44.3
Q ss_pred CCccchhhhhcceeeEeecCCeeeEEEcccceEEEecccc--cCCCceEEEeecCeEEEEEEc
Q 016020 273 NKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTE--FMTPSAFIFLYENQLFLTFRN 333 (396)
Q Consensus 273 sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~--~~~PsAFiFly~~qLFLTfs~ 333 (396)
...++|+...+.||+.-+.....-+||..++.+...|.-+ ...| ..+++-++ ||+--+.
T Consensus 66 ~~~~~F~al~gskIv~~d~~~~t~vyDt~t~av~~~P~l~~pk~~p-isv~VG~~-LY~m~~~ 126 (342)
T PF07893_consen 66 PWSMDFFALHGSKIVAVDQSGRTLVYDTDTRAVATGPRLHSPKRCP-ISVSVGDK-LYAMDRS 126 (342)
T ss_pred CceeEEEEecCCeEEEEcCCCCeEEEECCCCeEeccCCCCCCCcce-EEEEeCCe-EEEeecc
Confidence 3468899988999999988888999999999999877644 4555 55566444 7754443
No 366
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=20.16 E-value=9.6e+02 Score=24.70 Aligned_cols=198 Identities=16% Similarity=0.232 Sum_probs=109.9
Q ss_pred cccceeeeccccceEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcceeecccC
Q 016020 107 SGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLK 186 (396)
Q Consensus 107 sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF~~~~l~ 186 (396)
.+..-||-|.=|.+.-.+++...++.+.+.= ..+ -|+-.+.+- - ..|+.||.+|.
T Consensus 16 ~~~avafaRRPG~~~~v~D~~~g~~~~~~~a-~~g--------------RHFyGHg~f---s-----~dG~~LytTEn-- 70 (305)
T PF07433_consen 16 RPEAVAFARRPGTFALVFDCRTGQLLQRLWA-PPG--------------RHFYGHGVF---S-----PDGRLLYTTEN-- 70 (305)
T ss_pred CCeEEEEEeCCCcEEEEEEcCCCceeeEEcC-CCC--------------CEEecCEEE---c-----CCCCEEEEecc--
Confidence 4556677777777777777777776664422 111 122222220 0 24567999987
Q ss_pred CCCeEEeeCCCCcEEEeecCCCeEEEEecc-CceEEEEecc--CceEEEEEcCCe-EEEEEecCCCe-------------
Q 016020 187 WPGFVEFDDVNGKVLTYSAQDSIYKVFDLK-NYTMLYSISD--KHVQEIKISPGI-MLLIFNRSSSH------------- 249 (396)
Q Consensus 187 ~PgfVEFDd~NgkIlt~~a~d~~YrVwdlk-nYs~lysIs~--~~VqEIkiSpg~-~Ll~~q~~~~~------------- 249 (396)
||+. ..+.+-|||.. +|..+=+++. -+=+|+.+.|+- .|++.+.-=.+
T Consensus 71 -----d~~~----------g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~t 135 (305)
T PF07433_consen 71 -----DYET----------GRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDT 135 (305)
T ss_pred -----ccCC----------CcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhh
Confidence 5544 45555667777 8998888887 667899999776 77776542111
Q ss_pred --eeeEEEEeecCcEEEEEEe--ecccC----------Cccchhhhh-------cceeeEeecCCeeeEEEcccceEEEe
Q 016020 250 --VPLKILSIEDGTVLKVFYH--LLHRN----------KKVDFIEQF-------NEKLLVKQENENLQILDVRNAELMEV 308 (396)
Q Consensus 250 --iplkIl~IetG~~l~s~~~--~L~~s----------k~i~FiE~~-------~ekLLIKQed~~L~I~Dv~~~ki~~v 308 (396)
=.|..+|.++|+.+-...+ -+|+. ..|-|=+|. ---+.+.+.|+.++.++.-..+...+
T Consensus 136 M~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l 215 (305)
T PF07433_consen 136 MQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRL 215 (305)
T ss_pred cCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhh
Confidence 3466788999998875332 11221 112222221 11244444555555444433221111
Q ss_pred cccccCCCceEEEeecCeEEEEEEc--CeEEEEeccc-ceeee
Q 016020 309 SRTEFMTPSAFIFLYENQLFLTFRN--RTVAVWNFRG-ELVTS 348 (396)
Q Consensus 309 ~~t~~~~PsAFiFly~~qLFLTfs~--gti~iWd~~g-eL~t~ 348 (396)
..-.-+.-|..++.++.+-|= |.+.+||... +++..
T Consensus 216 ----~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~ 254 (305)
T PF07433_consen 216 ----NGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGS 254 (305)
T ss_pred ----CCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeec
Confidence 011234445556655544443 7999997665 66664
No 367
>PF03498 CDtoxinA: Cytolethal distending toxin A/C family; InterPro: IPR003558 Escherichia coli, Haemophilus spp and Campylobacter spp. all produce a toxin that is seen to cause distension in certain cell lines [, ], which eventually disintegrate and die. This novel toxin, termed cytolethal distending toxin (cdt), has three subunits: A, B and C. Their sizes are approx. 27.7, 29.5 and 19.9kDa respectively [], and they appear to be entirely novel []. Further research on the complete toxin has revealed that it blocks the cell cycle at stage G2, through inactivation of the cyclin-dependent kinase Cdk1, and without induction of DNA breaks. This leads to multipolar abortive mitosis and micronucleation, associated with centrosomal amplification []. The roles of each subunit are unclear, but it is believed that they have separate roles in pathogenicity. This entry represents the A and C subunits.; GO: 0009405 pathogenesis; PDB: 2F2F_A 1SR4_C.
Probab=20.15 E-value=5.5e+02 Score=23.61 Aligned_cols=115 Identities=17% Similarity=0.175 Sum_probs=0.0
Q ss_pred eEEEEeecCcEEEEEEeecccCCcc------------chhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCc--
Q 016020 252 LKILSIEDGTVLKVFYHLLHRNKKV------------DFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPS-- 317 (396)
Q Consensus 252 lkIl~IetG~~l~s~~~~L~~sk~i------------~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~Ps-- 317 (396)
+.|.++++|..|.... +.+++.+ +|.+.-. ++.-+...+-+|+-+..+++|+........+-.
T Consensus 2 vsIrsl~tG~~Lt~~~--~~~~~~~~~nW~~~~~~s~~~~~~r~-~~~~~~~~g~Vqf~n~~~~~CL~~~~~G~~~~~~C 78 (150)
T PF03498_consen 2 VSIRSLQTGAVLTNWA--LDPGNWLDQNWGYSEIDSNDFGKARD-RLIEFFPFGYVQFVNPKTGTCLAAYGNGVFHYKSC 78 (150)
T ss_dssp EEEEETTTSEEEEESS--SSTTSCCGG-EEEECGGTGCCGCCGT-EEEE-STTCEEEEEETTTSEEEEEETTCEEEE--T
T ss_pred EEEEcCCCCcEEEEee--cCCCCeeEeeeEeEeecCchHhhhhe-eecccCCCCEEEEEcCCCCcceeecCCCeEeeccc
Q ss_pred -----eEEEeecCeEEEEEEcCeEEEEecccc--eeeeeccccccCCC-----CCCCcEEEccCCcEEEE
Q 016020 318 -----AFIFLYENQLFLTFRNRTVAVWNFRGE--LVTSFEDHLLWHPD-----CNTNNIYITSDQDLIIS 375 (396)
Q Consensus 318 -----AFiFly~~qLFLTfs~gti~iWd~~ge--L~t~fedh~l~~~~-----c~~n~~~it~~qd~ii~ 375 (396)
+++|. ++-.++|-|.|-++..+ |.+.+....+..-. | +-.--+.-+|-..|+
T Consensus 79 ~~~~~~q~F~-----iiPtttgAVQIks~~~~~Cl~~~~~~~~~~~~~i~l~~C-d~~~~~~l~~lw~it 142 (150)
T PF03498_consen 79 DQDNLEQVFS-----IIPTTTGAVQIKSLSTGECLQTFNNSRTPIYYSIGLTPC-DKSKEINLDQLWFIT 142 (150)
T ss_dssp TTCHGHH-EE-----EEEBTTS-EEEEETTT--EEEE-STTSS-SSEEEEEE----S-EEETGGGEEEEE
T ss_pred CCCChhceEE-----EEEcCCCcEEEEecCCCceEEecCCCceeEEeeEEeeeC-CCcCCCCHHHcEEEc
No 368
>smart00108 B_lectin Bulb-type mannose-specific lectin.
Probab=20.14 E-value=4e+02 Score=22.13 Aligned_cols=48 Identities=17% Similarity=0.155 Sum_probs=22.4
Q ss_pred eEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEcC
Q 016020 287 LVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNR 334 (396)
Q Consensus 287 LIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~g 334 (396)
|+=|++++|.|+|-....+-....+....+...+...++.|-|.-.+|
T Consensus 58 l~l~~dGnLvl~~~~g~~vW~S~t~~~~~~~~~~L~ddGnlvl~~~~~ 105 (114)
T smart00108 58 LTLQSDGNLVLYDGDGRVVWSSNTTGANGNYVLVLLDDGNLVIYDSDG 105 (114)
T ss_pred EEEeCCCCEEEEeCCCCEEEEecccCCCCceEEEEeCCCCEEEECCCC
Confidence 334567788887765433333222213333344444455554433333
No 369
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=20.11 E-value=9.1e+02 Score=24.39 Aligned_cols=56 Identities=20% Similarity=0.295 Sum_probs=43.1
Q ss_pred CceEEEeecCeEEE-EEEcC-eEEEEecccceeeeeccccccCCCCC-----CCcEEEccCCc
Q 016020 316 PSAFIFLYENQLFL-TFRNR-TVAVWNFRGELVTSFEDHLLWHPDCN-----TNNIYITSDQD 371 (396)
Q Consensus 316 PsAFiFly~~qLFL-Tfs~g-ti~iWd~~geL~t~fedh~l~~~~c~-----~n~~~it~~qd 371 (396)
|..+.-=-++.|+. +...| -|.+|+-+|++....+-...|..+|. -+.+|||+++.
T Consensus 215 PDG~~vDadG~lw~~a~~~g~~v~~~~pdG~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~~ 277 (307)
T COG3386 215 PDGMAVDADGNLWVAAVWGGGRVVRFNPDGKLLGEIKLPVKRPTNPAFGGPDLNTLYITSARS 277 (307)
T ss_pred CCceEEeCCCCEEEecccCCceEEEECCCCcEEEEEECCCCCCccceEeCCCcCEEEEEecCC
Confidence 33444444888994 44444 99999999999999998888888754 48899999887
No 370
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=20.10 E-value=1.5e+02 Score=31.93 Aligned_cols=77 Identities=16% Similarity=0.146 Sum_probs=55.4
Q ss_pred cCceEEEEEcCCeE-EEEEecCCCeeeeEEEEeecCcEEEEEEeeccc-CCccchhhhhcceeeEeecCCeeeEEEcccc
Q 016020 226 DKHVQEIKISPGIM-LLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHR-NKKVDFIEQFNEKLLVKQENENLQILDVRNA 303 (396)
Q Consensus 226 ~~~VqEIkiSpg~~-Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~-sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ 303 (396)
+..|.++.+||.-. |+...+. .-.+||+|+++-...-++.. +. --.+.|=--...+|+-+--++.+-|||++.-
T Consensus 193 g~~IrdlafSp~~~GLl~~asl--~nkiki~dlet~~~vssy~a--~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~ 268 (463)
T KOG1645|consen 193 GSFIRDLAFSPFNEGLLGLASL--GNKIKIMDLETSCVVSSYIA--YNQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQP 268 (463)
T ss_pred chhhhhhccCccccceeeeecc--CceEEEEecccceeeeheec--cCCceeeeeccCCcceeEEeccCceEEEEEccCC
Confidence 36788999999887 6666666 56789999999888777662 21 1113332223678999999999999999985
Q ss_pred eEE
Q 016020 304 ELM 306 (396)
Q Consensus 304 ki~ 306 (396)
+-.
T Consensus 269 ~~~ 271 (463)
T KOG1645|consen 269 EGP 271 (463)
T ss_pred Cch
Confidence 543
No 371
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=20.04 E-value=2.5e+02 Score=30.86 Aligned_cols=174 Identities=17% Similarity=0.191 Sum_probs=0.0
Q ss_pred hhhhccccceeeeccccc-eEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeee----hhhhhhC-----
Q 016020 102 FALAHSGVCAAFSRETNR-RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTK----IEYIRRG----- 171 (396)
Q Consensus 102 ~~L~~sG~c~af~~~t~~-~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~----~~~i~~g----- 171 (396)
+-+..+|.--+||....- -.|+.-.=+..=|+.++||.--|+.+. ++ +||--..
T Consensus 116 Vs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vS----------------iD~~gmVEyWs~e~~~qf 179 (558)
T KOG0882|consen 116 VSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVS----------------IDISGMVEYWSAEGPFQF 179 (558)
T ss_pred eecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceee----------------ccccceeEeecCCCcccC
Q ss_pred -------CCCCCCcceee-cccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEE
Q 016020 172 -------KPDSGFALFES-ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLL 241 (396)
Q Consensus 172 -------k~~~~~~LF~~-~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll 241 (396)
++-..+-|++. --=..|.-+||++...+|-+-+ .|-.+|+|+.|+.+.+=+|.. .+.|+-.=|
T Consensus 180 Pr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~-~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks------ 252 (558)
T KOG0882|consen 180 PRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLN-PDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKS------ 252 (558)
T ss_pred ccccccccccccchhhcccccccCccceEEccccCcccccC-cccEEEEEEeccchhhhhhhccchhhhhcccc------
Q ss_pred EEecCCCeeeeEEEEeecCcEEEEEE----eecccCCccchhhhhcceeeEeecCCeeeEEEcccceEEEec
Q 016020 242 IFNRSSSHVPLKILSIEDGTVLKVFY----HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVS 309 (396)
Q Consensus 242 ~~q~~~~~iplkIl~IetG~~l~s~~----~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~ 309 (396)
|.-|-+++=|..+..=+ +-+...-.+.|=| .+.+||-..-=+ |+++++.|+++.++.
T Consensus 253 ---------~y~l~~VelgRRmaverelek~~~~~~~~~~fde-s~~flly~t~~g-ikvin~~tn~v~ri~ 313 (558)
T KOG0882|consen 253 ---------PYGLMHVELGRRMAVERELEKHGSTVGTNAVFDE-SGNFLLYGTILG-IKVINLDTNTVVRIL 313 (558)
T ss_pred ---------ccccceeehhhhhhHHhhHhhhcCcccceeEEcC-CCCEEEeeccee-EEEEEeecCeEEEEe
Done!