Query 016021
Match_columns 396
No_of_seqs 289 out of 1483
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 06:32:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016021.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016021hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1h8a_C AMV V-MYB, MYB transfor 100.0 1.6E-34 5.6E-39 248.8 9.0 114 2-116 15-128 (128)
2 1gv2_A C-MYB, MYB proto-oncoge 100.0 1.1E-33 3.7E-38 235.6 10.2 105 11-116 1-105 (105)
3 2k9n_A MYB24; R2R3 domain, DNA 100.0 1.1E-33 3.8E-38 237.3 8.9 105 14-119 1-105 (107)
4 3zqc_A MYB3; transcription-DNA 100.0 2.4E-33 8.1E-38 243.0 11.2 111 14-125 2-112 (131)
5 3osg_A MYB21; transcription-DN 100.0 1.1E-32 3.9E-37 237.5 10.0 106 8-115 5-110 (126)
6 1h89_C C-MYB, MYB proto-oncoge 100.0 4E-33 1.4E-37 247.9 6.5 125 12-137 4-129 (159)
7 1h89_C C-MYB, MYB proto-oncoge 100.0 3.6E-32 1.2E-36 241.8 7.9 113 3-116 47-159 (159)
8 1h8a_C AMV V-MYB, MYB transfor 99.9 1.7E-24 5.8E-29 186.3 5.8 97 40-137 1-98 (128)
9 2dim_A Cell division cycle 5-l 99.8 4.4E-22 1.5E-26 155.4 2.4 67 8-75 3-69 (70)
10 2dim_A Cell division cycle 5-l 99.7 3.7E-18 1.3E-22 133.1 6.2 65 62-126 4-69 (70)
11 1ign_A Protein (RAP1); RAP1,ye 99.7 3.1E-18 1.1E-22 162.5 7.0 105 10-115 4-200 (246)
12 2llk_A Cyclin-D-binding MYB-li 99.7 1.1E-17 3.6E-22 133.0 4.8 58 54-112 10-67 (73)
13 2d9a_A B-MYB, MYB-related prot 99.7 1.3E-17 4.4E-22 126.3 3.6 57 9-66 3-59 (60)
14 2din_A Cell division cycle 5-l 99.7 4.3E-17 1.5E-21 125.7 6.4 60 60-120 2-61 (66)
15 2juh_A Telomere binding protei 99.7 1.1E-17 3.7E-22 144.6 3.2 83 8-91 11-103 (121)
16 1gvd_A MYB proto-oncogene prot 99.7 2E-17 6.9E-22 121.9 3.5 52 12-64 1-52 (52)
17 2cu7_A KIAA1915 protein; nucle 99.7 1.3E-16 4.3E-21 125.3 6.9 64 61-125 3-66 (72)
18 1guu_A C-MYB, MYB proto-oncoge 99.6 3.4E-17 1.2E-21 120.5 2.7 52 12-64 1-52 (52)
19 1ity_A TRF1; helix-turn-helix, 99.6 5.8E-17 2E-21 126.1 3.3 64 8-71 4-68 (69)
20 2roh_A RTBP1, telomere binding 99.6 9.6E-17 3.3E-21 138.9 4.9 79 9-88 26-114 (122)
21 3osg_A MYB21; transcription-DN 99.6 2E-16 6.9E-21 136.0 6.6 76 62-137 6-81 (126)
22 2d9a_A B-MYB, MYB-related prot 99.6 2.2E-16 7.4E-21 119.5 5.4 56 62-117 3-59 (60)
23 1gv2_A C-MYB, MYB proto-oncoge 99.6 2.5E-16 8.5E-21 130.7 5.7 74 64-137 1-75 (105)
24 1guu_A C-MYB, MYB proto-oncoge 99.6 7.7E-16 2.6E-20 113.2 6.1 50 65-114 1-51 (52)
25 1ity_A TRF1; helix-turn-helix, 99.6 1.6E-15 5.6E-20 117.9 7.0 62 60-121 3-67 (69)
26 1gvd_A MYB proto-oncogene prot 99.6 1.3E-15 4.3E-20 112.2 5.9 50 65-114 1-51 (52)
27 2din_A Cell division cycle 5-l 99.6 1.2E-16 4.2E-21 123.1 -0.1 59 7-68 2-60 (66)
28 2k9n_A MYB24; R2R3 domain, DNA 99.6 1E-15 3.4E-20 128.1 5.3 70 67-136 1-71 (107)
29 3sjm_A Telomeric repeat-bindin 99.6 3.8E-16 1.3E-20 120.8 2.5 56 11-66 8-64 (64)
30 1x41_A Transcriptional adaptor 99.6 5.5E-16 1.9E-20 117.8 3.1 56 9-65 3-58 (60)
31 3zqc_A MYB3; transcription-DNA 99.6 1.8E-15 6.1E-20 130.7 5.9 71 67-137 2-73 (131)
32 1w0t_A Telomeric repeat bindin 99.5 5.6E-15 1.9E-19 109.4 6.2 49 66-114 1-52 (53)
33 1x41_A Transcriptional adaptor 99.5 4.4E-15 1.5E-19 112.8 5.7 53 62-114 3-56 (60)
34 2yum_A ZZZ3 protein, zinc fing 99.5 7.2E-15 2.5E-19 115.7 6.0 62 62-123 3-70 (75)
35 2yum_A ZZZ3 protein, zinc fing 99.5 1.3E-15 4.5E-20 120.0 1.2 60 9-69 3-67 (75)
36 2llk_A Cyclin-D-binding MYB-li 99.5 3.6E-15 1.2E-19 118.5 3.2 63 2-68 11-73 (73)
37 1w0t_A Telomeric repeat bindin 99.5 3E-15 1E-19 110.8 2.4 50 13-62 1-51 (53)
38 3sjm_A Telomeric repeat-bindin 99.5 1.5E-14 5.1E-19 111.9 6.2 52 65-116 9-63 (64)
39 2elk_A SPCC24B10.08C protein; 99.5 3.8E-15 1.3E-19 112.6 2.9 52 10-61 5-56 (58)
40 2elk_A SPCC24B10.08C protein; 99.5 4.1E-14 1.4E-18 107.0 6.2 50 63-112 5-56 (58)
41 2cu7_A KIAA1915 protein; nucle 99.5 5.8E-15 2E-19 115.8 1.3 59 7-67 2-60 (72)
42 2ltp_A Nuclear receptor corepr 99.2 1.1E-14 3.6E-19 119.2 0.0 56 60-115 9-64 (89)
43 2aje_A Telomere repeat-binding 99.4 3.1E-13 1.1E-17 114.2 4.7 79 8-86 7-94 (105)
44 2juh_A Telomere binding protei 99.4 1E-12 3.5E-17 113.6 7.3 79 61-139 11-100 (121)
45 2ckx_A NGTRF1, telomere bindin 99.3 4.7E-13 1.6E-17 108.7 4.5 69 15-84 1-79 (83)
46 2cqr_A RSGI RUH-043, DNAJ homo 99.3 1E-12 3.5E-17 104.3 6.1 52 63-114 14-69 (73)
47 2yus_A SWI/SNF-related matrix- 99.3 5E-13 1.7E-17 107.4 3.1 50 9-60 13-62 (79)
48 1ign_A Protein (RAP1); RAP1,ye 99.3 1.8E-12 6.2E-17 123.2 6.4 73 63-135 4-111 (246)
49 2yus_A SWI/SNF-related matrix- 99.3 1.4E-12 4.8E-17 104.8 4.4 48 64-111 15-62 (79)
50 2roh_A RTBP1, telomere binding 99.3 4.3E-12 1.5E-16 109.8 6.5 72 63-134 27-109 (122)
51 2ltp_A Nuclear receptor corepr 98.9 5E-13 1.7E-17 109.3 0.0 55 7-63 9-63 (89)
52 2cqr_A RSGI RUH-043, DNAJ homo 99.2 1.6E-12 5.6E-17 103.1 1.5 54 8-62 12-68 (73)
53 2aje_A Telomere repeat-binding 99.2 1.7E-11 5.9E-16 103.6 7.3 52 62-113 8-64 (105)
54 2ckx_A NGTRF1, telomere bindin 99.2 1.9E-11 6.4E-16 99.3 6.4 48 68-115 1-53 (83)
55 1x58_A Hypothetical protein 49 99.2 3.3E-11 1.1E-15 93.0 6.3 49 66-114 7-58 (62)
56 2cjj_A Radialis; plant develop 99.1 7.1E-11 2.4E-15 97.7 6.4 50 66-115 7-60 (93)
57 3hm5_A DNA methyltransferase 1 99.0 7.1E-10 2.4E-14 91.9 7.1 67 50-120 17-88 (93)
58 2cjj_A Radialis; plant develop 98.9 1.8E-10 6.3E-15 95.3 1.3 48 13-61 7-57 (93)
59 2eqr_A N-COR1, N-COR, nuclear 98.9 1.5E-09 5.2E-14 82.7 6.0 48 66-113 11-58 (61)
60 2cqq_A RSGI RUH-037, DNAJ homo 98.8 8.1E-09 2.8E-13 81.6 5.5 51 64-115 5-59 (72)
61 2eqr_A N-COR1, N-COR, nuclear 98.7 8.3E-09 2.8E-13 78.6 3.0 51 8-60 6-56 (61)
62 1x58_A Hypothetical protein 49 98.6 1.5E-08 5.1E-13 78.2 2.6 48 13-62 7-57 (62)
63 2iw5_B Protein corest, REST co 98.6 4.9E-08 1.7E-12 92.3 5.9 49 66-114 132-180 (235)
64 2cqq_A RSGI RUH-037, DNAJ homo 98.5 2.7E-08 9.2E-13 78.6 1.2 50 11-62 5-57 (72)
65 2xag_B REST corepressor 1; ami 98.4 1.3E-07 4.3E-12 97.9 4.9 45 68-112 381-425 (482)
66 1wgx_A KIAA1903 protein; MYB D 98.4 2.1E-07 7.3E-12 73.9 5.0 48 67-114 8-59 (73)
67 1fex_A TRF2-interacting telome 98.4 3E-07 1E-11 69.9 5.0 47 67-113 2-58 (59)
68 1fex_A TRF2-interacting telome 98.4 9.3E-08 3.2E-12 72.8 1.5 48 14-62 2-58 (59)
69 1wgx_A KIAA1903 protein; MYB D 98.2 3.2E-07 1.1E-11 72.9 1.7 48 14-62 8-58 (73)
70 2iw5_B Protein corest, REST co 98.2 4.8E-07 1.6E-11 85.6 2.9 48 13-62 132-179 (235)
71 2yqk_A Arginine-glutamic acid 98.0 1.1E-05 3.9E-10 61.7 6.8 50 62-111 4-54 (63)
72 1ofc_X ISWI protein; nuclear p 98.0 1.2E-05 4.1E-10 79.0 7.8 100 16-116 112-277 (304)
73 1ug2_A 2610100B20RIK gene prod 97.9 1.6E-05 5.3E-10 65.7 6.4 49 69-117 35-86 (95)
74 4eef_G F-HB80.4, designed hema 97.9 2.9E-06 9.8E-11 67.5 1.4 43 67-109 20-66 (74)
75 4iej_A DNA methyltransferase 1 97.9 2.9E-05 9.9E-10 64.3 7.0 62 55-120 22-88 (93)
76 2lr8_A CAsp8-associated protei 97.0 3.7E-06 1.3E-10 66.0 0.0 45 69-114 16-63 (70)
77 4eef_G F-HB80.4, designed hema 97.6 9.5E-06 3.3E-10 64.5 0.6 44 14-58 20-66 (74)
78 2yqk_A Arginine-glutamic acid 97.5 4.5E-05 1.5E-09 58.4 2.9 49 9-59 4-53 (63)
79 4a69_C Nuclear receptor corepr 97.5 0.00014 4.7E-09 59.9 6.0 46 67-112 43-88 (94)
80 2crg_A Metastasis associated p 97.4 0.00025 8.4E-09 55.4 6.5 44 67-110 8-52 (70)
81 3hm5_A DNA methyltransferase 1 97.4 2.5E-05 8.7E-10 64.6 0.4 53 4-61 24-80 (93)
82 2xag_B REST corepressor 1; ami 97.3 6.5E-05 2.2E-09 77.8 2.1 46 13-60 379-424 (482)
83 2ebi_A DNA binding protein GT- 97.1 0.0004 1.4E-08 55.4 4.2 50 67-116 4-67 (86)
84 2ebi_A DNA binding protein GT- 96.9 0.0001 3.6E-09 58.9 -0.7 50 12-61 2-63 (86)
85 4a69_C Nuclear receptor corepr 96.8 0.00046 1.6E-08 56.8 2.1 43 14-58 43-85 (94)
86 2crg_A Metastasis associated p 96.8 0.00052 1.8E-08 53.5 2.2 45 13-59 7-52 (70)
87 2y9y_A Imitation switch protei 96.7 0.0037 1.3E-07 62.9 8.1 103 16-118 125-295 (374)
88 4b4c_A Chromodomain-helicase-D 96.6 0.0034 1.2E-07 57.2 6.9 46 69-114 136-196 (211)
89 1ug2_A 2610100B20RIK gene prod 96.4 0.0011 3.8E-08 54.7 1.8 47 13-60 32-80 (95)
90 2lr8_A CAsp8-associated protei 95.4 0.00058 2E-08 53.6 0.0 46 14-61 14-61 (70)
91 1irz_A ARR10-B; helix-turn-hel 93.5 0.16 5.5E-06 39.2 6.0 47 66-112 6-57 (64)
92 4iej_A DNA methyltransferase 1 93.4 0.034 1.2E-06 46.0 2.2 48 13-61 29-80 (93)
93 1ofc_X ISWI protein; nuclear p 92.3 0.22 7.5E-06 48.9 6.6 48 68-115 111-159 (304)
94 4b4c_A Chromodomain-helicase-D 89.3 0.41 1.4E-05 43.2 5.1 49 66-114 6-59 (211)
95 1irz_A ARR10-B; helix-turn-hel 88.7 0.23 8E-06 38.3 2.5 51 10-60 3-56 (64)
96 2xb0_X Chromo domain-containin 87.9 0.25 8.5E-06 47.7 2.7 28 15-42 169-196 (270)
97 2xb0_X Chromo domain-containin 74.0 6.1 0.00021 38.0 6.7 49 67-115 3-56 (270)
98 2rq5_A Protein jumonji; develo 60.4 11 0.00038 32.0 4.9 93 14-135 7-114 (121)
99 2o8x_A Probable RNA polymerase 58.9 11 0.00037 26.9 4.1 44 70-115 16-59 (70)
100 1ku3_A Sigma factor SIGA; heli 54.3 14 0.00049 27.2 4.1 43 73-116 13-59 (73)
101 2lm1_A Lysine-specific demethy 53.0 19 0.00065 29.2 5.0 39 77-115 48-98 (107)
102 2li6_A SWI/SNF chromatin-remod 52.9 8.8 0.0003 31.9 3.0 39 77-115 53-99 (116)
103 2rq5_A Protein jumonji; develo 52.7 3.9 0.00013 34.8 0.8 57 24-83 46-113 (121)
104 2y9y_A Imitation switch protei 51.5 24 0.00081 35.6 6.3 46 68-113 124-171 (374)
105 2jrz_A Histone demethylase jar 50.6 17 0.0006 30.2 4.5 39 77-115 44-94 (117)
106 2p7v_B Sigma-70, RNA polymeras 48.6 15 0.00053 26.6 3.5 42 73-115 8-53 (68)
107 2cxy_A BAF250B subunit, HBAF25 47.9 22 0.00076 29.8 4.8 39 77-115 55-105 (125)
108 2li6_A SWI/SNF chromatin-remod 47.6 4.3 0.00015 33.9 0.2 39 24-63 53-98 (116)
109 2eqy_A RBP2 like, jumonji, at 47.2 22 0.00075 29.8 4.6 39 77-115 46-96 (122)
110 1kkx_A Transcription regulator 44.0 12 0.00039 31.8 2.4 39 78-116 53-99 (123)
111 1ig6_A MRF-2, modulator recogn 42.8 6.5 0.00022 32.1 0.6 40 24-63 37-87 (107)
112 1c20_A DEAD ringer protein; DN 41.0 33 0.0011 28.8 4.8 39 77-115 56-107 (128)
113 3cz6_A DNA-binding protein RAP 40.8 9.5 0.00033 34.4 1.4 30 10-42 110-147 (168)
114 3hug_A RNA polymerase sigma fa 39.5 36 0.0012 26.1 4.5 41 73-114 40-80 (92)
115 2jrz_A Histone demethylase jar 39.5 6.3 0.00022 32.9 0.1 40 24-63 44-93 (117)
116 2jxj_A Histone demethylase jar 37.1 16 0.00053 29.1 2.0 38 77-114 40-89 (96)
117 2kk0_A AT-rich interactive dom 36.5 37 0.0013 29.3 4.5 39 77-115 68-119 (145)
118 1c20_A DEAD ringer protein; DN 34.7 6.3 0.00022 33.3 -0.7 40 24-63 56-106 (128)
119 3i4p_A Transcriptional regulat 33.8 8.9 0.0003 32.9 0.1 44 20-65 3-46 (162)
120 2cxy_A BAF250B subunit, HBAF25 33.8 6.7 0.00023 33.1 -0.7 40 24-63 55-104 (125)
121 3i4p_A Transcriptional regulat 33.2 30 0.001 29.5 3.4 45 73-118 3-48 (162)
122 2eqy_A RBP2 like, jumonji, at 33.1 9.4 0.00032 32.1 0.1 40 24-63 46-95 (122)
123 1x3u_A Transcriptional regulat 32.9 71 0.0024 23.2 5.0 43 70-115 17-59 (79)
124 1or7_A Sigma-24, RNA polymeras 32.7 62 0.0021 27.1 5.3 30 85-115 155-184 (194)
125 1tty_A Sigma-A, RNA polymerase 32.4 48 0.0016 25.3 4.1 42 73-115 21-66 (87)
126 2q1z_A RPOE, ECF SIGE; ECF sig 32.3 42 0.0014 28.0 4.1 30 85-115 150-179 (184)
127 1ig6_A MRF-2, modulator recogn 30.9 25 0.00086 28.6 2.3 38 77-114 37-87 (107)
128 1u78_A TC3 transposase, transp 30.4 2E+02 0.0069 22.7 8.2 86 15-106 5-98 (141)
129 2kk0_A AT-rich interactive dom 29.9 16 0.00054 31.6 1.0 56 24-79 68-136 (145)
130 3ulq_B Transcriptional regulat 29.3 85 0.0029 24.4 5.2 46 67-115 27-72 (90)
131 3c57_A Two component transcrip 27.9 78 0.0027 24.6 4.7 44 69-115 27-70 (95)
132 1fse_A GERE; helix-turn-helix 27.4 77 0.0026 22.5 4.3 45 68-115 10-54 (74)
133 2yqf_A Ankyrin-1; death domain 27.0 74 0.0025 25.8 4.6 34 71-105 14-47 (111)
134 1je8_A Nitrate/nitrite respons 26.3 78 0.0027 23.9 4.3 44 69-115 21-64 (82)
135 2k27_A Paired box protein PAX- 25.8 1.9E+02 0.0066 23.9 7.2 66 15-85 24-99 (159)
136 1rp3_A RNA polymerase sigma fa 25.2 81 0.0028 27.1 4.8 40 74-114 191-230 (239)
137 1xsv_A Hypothetical UPF0122 pr 24.7 96 0.0033 25.1 4.8 41 73-114 28-68 (113)
138 3mzy_A RNA polymerase sigma-H 24.3 71 0.0024 25.6 4.0 30 84-114 122-151 (164)
139 2jpc_A SSRB; DNA binding prote 24.2 1E+02 0.0036 21.2 4.4 39 75-115 3-41 (61)
140 2e1c_A Putative HTH-type trans 22.6 1.2E+02 0.0042 26.1 5.4 45 73-118 27-72 (171)
141 1k78_A Paired box protein PAX5 22.4 2.1E+02 0.0072 23.2 6.7 66 15-85 31-106 (149)
142 2p1m_A SKP1-like protein 1A; F 22.1 34 0.0011 29.6 1.6 36 38-81 119-154 (160)
143 2dbb_A Putative HTH-type trans 22.0 1.3E+02 0.0044 24.8 5.2 45 73-118 9-54 (151)
144 2of5_H Leucine-rich repeat and 21.0 79 0.0027 26.1 3.6 29 75-104 13-41 (118)
145 3cz6_A DNA-binding protein RAP 20.9 51 0.0018 29.7 2.6 27 53-79 99-126 (168)
146 2o71_A Death domain-containing 20.9 89 0.0031 25.9 4.0 34 67-104 19-52 (115)
147 2of5_A Death domain-containing 20.8 85 0.0029 26.0 3.8 39 62-104 14-52 (114)
148 1p4w_A RCSB; solution structur 20.7 2E+02 0.0068 22.8 5.9 46 67-115 32-77 (99)
149 2e1c_A Putative HTH-type trans 20.5 32 0.0011 29.9 1.2 45 19-65 26-70 (171)
150 1tc3_C Protein (TC3 transposas 20.3 1.7E+02 0.0058 18.3 5.0 37 69-107 5-41 (51)
No 1
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=100.00 E-value=1.6e-34 Score=248.85 Aligned_cols=114 Identities=41% Similarity=0.837 Sum_probs=103.3
Q ss_pred CCCcccccCCCCccCCCHHHHHHHHHHHHHhCCCCceecccccccccccccchhhhhhccCCCCCCCCCCHHHHHHHHHH
Q 016021 2 GRHSCCVKQKLRKGLWSPEEDEKLYNYITRFGVGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGMFSQQEEDLIISL 81 (396)
Q Consensus 2 gRw~~~lkpkikKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~mg~gRt~kQCReRW~n~L~P~lkkg~WT~EED~~Llel 81 (396)
.||..+++|.+++|+||+|||++|+++|++||..+|..||+.|+ +|+++||++||.++|+|.+++++||+|||++|+++
T Consensus 15 ~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~ 93 (128)
T 1h8a_C 15 HRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQA 93 (128)
T ss_dssp -------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSS-SCCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHH
T ss_pred HHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhc-CCcHHHHHHHHHHhcccccccccCCHHHHHHHHHH
Confidence 58999999999999999999999999999999888999999998 99999999999999999999999999999999999
Q ss_pred HHHhCCchhhhhhcCCCCCHHHHHHHHHHHhhhhh
Q 016021 82 HEVLGNRWAQIASQLPGRTDNEIKNFWNSCLKKKL 116 (396)
Q Consensus 82 v~~~G~kW~~IAk~LpGRT~~qcRnRW~~~Lkk~l 116 (396)
+.+||++|..||+.|||||+++|++||+.++++++
T Consensus 94 ~~~~G~~W~~Ia~~l~gRt~~~~k~r~~~~~~~~~ 128 (128)
T 1h8a_C 94 HKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128 (128)
T ss_dssp HHHHCSCHHHHGGGSTTCCHHHHHHHHHTTTTC--
T ss_pred HHHHCcCHHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999988753
No 2
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=100.00 E-value=1.1e-33 Score=235.57 Aligned_cols=105 Identities=45% Similarity=0.897 Sum_probs=99.6
Q ss_pred CCCccCCCHHHHHHHHHHHHHhCCCCceecccccccccccccchhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCchh
Q 016021 11 KLRKGLWSPEEDEKLYNYITRFGVGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGMFSQQEEDLIISLHEVLGNRWA 90 (396)
Q Consensus 11 kikKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~mg~gRt~kQCReRW~n~L~P~lkkg~WT~EED~~Llelv~~~G~kW~ 90 (396)
.+++|+||+|||++|+++|++||..+|..||+.|+ +|+++||++||.++|+|.+++++||+|||.+|+++|.+||++|.
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~ 79 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWA 79 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhc-CCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHH
Confidence 47899999999999999999999889999999998 99999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCCHHHHHHHHHHHhhhhh
Q 016021 91 QIASQLPGRTDNEIKNFWNSCLKKKL 116 (396)
Q Consensus 91 ~IAk~LpGRT~~qcRnRW~~~Lkk~l 116 (396)
.||+.|||||+.+|++||+.++++++
T Consensus 80 ~Ia~~l~gRt~~~~k~rw~~~~~~~~ 105 (105)
T 1gv2_A 80 EIAKLLPGRTDNAIKNHWNSTMRRKV 105 (105)
T ss_dssp HHHTTCTTCCHHHHHHHHHHHTC---
T ss_pred HHHHHcCCCCHHHHHHHHHHHHhccC
Confidence 99999999999999999999998753
No 3
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=100.00 E-value=1.1e-33 Score=237.29 Aligned_cols=105 Identities=31% Similarity=0.585 Sum_probs=101.2
Q ss_pred ccCCCHHHHHHHHHHHHHhCCCCceecccccccccccccchhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCchhhhh
Q 016021 14 KGLWSPEEDEKLYNYITRFGVGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGMFSQQEEDLIISLHEVLGNRWAQIA 93 (396)
Q Consensus 14 Kg~WT~EEDe~L~~lV~kyG~~nW~~IAk~mg~gRt~kQCReRW~n~L~P~lkkg~WT~EED~~Llelv~~~G~kW~~IA 93 (396)
||+||+|||++|+++|.+||..+|..||..|+ +|+++||++||.++|+|.+++++||+|||.+|+++|.+||++|..||
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia 79 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMI-TRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKIS 79 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTT-TSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcC-CCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHH
Confidence 68999999999999999999889999999998 99999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHhhhhhhhC
Q 016021 94 SQLPGRTDNEIKNFWNSCLKKKLMKQ 119 (396)
Q Consensus 94 k~LpGRT~~qcRnRW~~~Lkk~lkk~ 119 (396)
+.|||||+++|++||+.++++..++.
T Consensus 80 ~~l~gRt~~~~k~rw~~l~r~~~~~~ 105 (107)
T 2k9n_A 80 KFLKNRSDNNIRNRWMMIARHRAKHQ 105 (107)
T ss_dssp HHHSSSCHHHHHHHHHHHHHHHHSST
T ss_pred HHCCCCCHHHHHHHHHHHHhhHHHhh
Confidence 99999999999999999998876654
No 4
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=100.00 E-value=2.4e-33 Score=242.96 Aligned_cols=111 Identities=32% Similarity=0.646 Sum_probs=106.7
Q ss_pred ccCCCHHHHHHHHHHHHHhCCCCceecccccccccccccchhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCchhhhh
Q 016021 14 KGLWSPEEDEKLYNYITRFGVGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGMFSQQEEDLIISLHEVLGNRWAQIA 93 (396)
Q Consensus 14 Kg~WT~EEDe~L~~lV~kyG~~nW~~IAk~mg~gRt~kQCReRW~n~L~P~lkkg~WT~EED~~Llelv~~~G~kW~~IA 93 (396)
||+||+|||++|+++|.+||.++|..||..|+ +|+++|||+||.++|+|.+++|+||+|||++|+++|.+||++|..||
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia 80 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLP-NRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIA 80 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCT-TSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHC-CCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHH
Confidence 79999999999999999999999999999998 99999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHhhhhhhhCCCCcCC
Q 016021 94 SQLPGRTDNEIKNFWNSCLKKKLMKQGIDPAT 125 (396)
Q Consensus 94 k~LpGRT~~qcRnRW~~~Lkk~lkk~~~s~eE 125 (396)
+.|||||+++|++||+.++++.+....++.+.
T Consensus 81 ~~l~gRt~~~~k~rw~~~l~~~~~~~~~~~~~ 112 (131)
T 3zqc_A 81 KLIPGRTDNAIKNRWNSSISKRISTNSNHKEI 112 (131)
T ss_dssp TTSTTCCHHHHHHHHHHTTGGGCCCCTTSCCC
T ss_pred HHcCCCCHHHHHHHHHHHHHHHhhcCCCcccc
Confidence 99999999999999999999999887766554
No 5
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.97 E-value=1.1e-32 Score=237.47 Aligned_cols=106 Identities=33% Similarity=0.609 Sum_probs=101.1
Q ss_pred ccCCCCccCCCHHHHHHHHHHHHHhCCCCceecccccccccccccchhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCC
Q 016021 8 VKQKLRKGLWSPEEDEKLYNYITRFGVGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGMFSQQEEDLIISLHEVLGN 87 (396)
Q Consensus 8 lkpkikKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~mg~gRt~kQCReRW~n~L~P~lkkg~WT~EED~~Llelv~~~G~ 87 (396)
.++..+||+||+|||++|+++|.+||. +|..||+.|+ +|+++|||+||.++|+|.+++++||+|||++|+++|.+||+
T Consensus 5 ~~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~ 82 (126)
T 3osg_A 5 NLKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFP-NRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGR 82 (126)
T ss_dssp C-CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCT-TCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcC-CCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCc
Confidence 357789999999999999999999997 7999999998 99999999999999999999999999999999999999999
Q ss_pred chhhhhhcCCCCCHHHHHHHHHHHhhhh
Q 016021 88 RWAQIASQLPGRTDNEIKNFWNSCLKKK 115 (396)
Q Consensus 88 kW~~IAk~LpGRT~~qcRnRW~~~Lkk~ 115 (396)
+|..||+.|||||+.+||+||..++++.
T Consensus 83 ~W~~Ia~~l~gRt~~~~k~rw~~l~~k~ 110 (126)
T 3osg_A 83 QWAIIAKFFPGRTDIHIKNRWVTISNKL 110 (126)
T ss_dssp CHHHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999999888764
No 6
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.97 E-value=4e-33 Score=247.92 Aligned_cols=125 Identities=27% Similarity=0.531 Sum_probs=82.3
Q ss_pred CCccCCCHHHHHHHHHHHHHhCCCCceecccccccccccccchhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCC-chh
Q 016021 12 LRKGLWSPEEDEKLYNYITRFGVGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGMFSQQEEDLIISLHEVLGN-RWA 90 (396)
Q Consensus 12 ikKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~mg~gRt~kQCReRW~n~L~P~lkkg~WT~EED~~Llelv~~~G~-kW~ 90 (396)
+++++||+|||++|+++|.+||..+|..||+.|+ +|+++||++||.++|+|.+++++||+|||++|+++|.+||. +|.
T Consensus 4 ~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~ 82 (159)
T 1h89_C 4 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRWS 82 (159)
T ss_dssp ----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccHH
Confidence 6789999999999999999999989999999998 99999999999999999999999999999999999999996 699
Q ss_pred hhhhcCCCCCHHHHHHHHHHHhhhhhhhCCCCcCCcchhHHHHHHHH
Q 016021 91 QIASQLPGRTDNEIKNFWNSCLKKKLMKQGIDPATHKPIADIIEIEV 137 (396)
Q Consensus 91 ~IAk~LpGRT~~qcRnRW~~~Lkk~lkk~~~s~eEd~~L~~ive~~~ 137 (396)
.||+.|||||+.||++||.++|++.+++..|+++|+..|.+++....
T Consensus 83 ~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g 129 (159)
T 1h89_C 83 VIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLG 129 (159)
T ss_dssp HHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999988887644
No 7
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.97 E-value=3.6e-32 Score=241.81 Aligned_cols=113 Identities=42% Similarity=0.845 Sum_probs=108.4
Q ss_pred CCcccccCCCCccCCCHHHHHHHHHHHHHhCCCCceecccccccccccccchhhhhhccCCCCCCCCCCHHHHHHHHHHH
Q 016021 3 RHSCCVKQKLRKGLWSPEEDEKLYNYITRFGVGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGMFSQQEEDLIISLH 82 (396)
Q Consensus 3 Rw~~~lkpkikKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~mg~gRt~kQCReRW~n~L~P~lkkg~WT~EED~~Llelv 82 (396)
||..+++|.+++|+||+|||++|+++|++||..+|..||+.|+ +|++.||++||.++|+|.+++++||+|||.+|++++
T Consensus 47 Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~ 125 (159)
T 1h89_C 47 RWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAH 125 (159)
T ss_dssp HHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTST-TCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHH
T ss_pred HHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcC-CCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHH
Confidence 7888999999999999999999999999999888999999998 999999999999999999999999999999999999
Q ss_pred HHhCCchhhhhhcCCCCCHHHHHHHHHHHhhhhh
Q 016021 83 EVLGNRWAQIASQLPGRTDNEIKNFWNSCLKKKL 116 (396)
Q Consensus 83 ~~~G~kW~~IAk~LpGRT~~qcRnRW~~~Lkk~l 116 (396)
.+||++|..||+.|||||+++|++||+.++++++
T Consensus 126 ~~~g~~W~~Ia~~l~gRt~~~~knr~~~~~r~~~ 159 (159)
T 1h89_C 126 KRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159 (159)
T ss_dssp HHHCSCHHHHHTTSTTCCHHHHHHHHHTTTCC--
T ss_pred HHHCCCHHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999887753
No 8
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.90 E-value=1.7e-24 Score=186.32 Aligned_cols=97 Identities=23% Similarity=0.482 Sum_probs=72.5
Q ss_pred cccccccccccccchhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCC-chhhhhhcCCCCCHHHHHHHHHHHhhhhhhh
Q 016021 40 VPKLAGLQRCGKSCRLRWINYLRPDLKRGMFSQQEEDLIISLHEVLGN-RWAQIASQLPGRTDNEIKNFWNSCLKKKLMK 118 (396)
Q Consensus 40 IAk~mg~gRt~kQCReRW~n~L~P~lkkg~WT~EED~~Llelv~~~G~-kW~~IAk~LpGRT~~qcRnRW~~~Lkk~lkk 118 (396)
||+.|+ +|+++||++||.++|+|.+++|+||+|||++|+++|.+||. +|.+||+.|||||+.||++||.++|++.+++
T Consensus 1 Ia~~~~-~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~ 79 (128)
T 1h8a_C 1 MEAVIK-NRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKK 79 (128)
T ss_dssp ----------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCC
T ss_pred CccccC-CCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhccccccc
Confidence 788898 99999999999999999999999999999999999999996 6999999999999999999999999999999
Q ss_pred CCCCcCCcchhHHHHHHHH
Q 016021 119 QGIDPATHKPIADIIEIEV 137 (396)
Q Consensus 119 ~~~s~eEd~~L~~ive~~~ 137 (396)
+.|+++||..|.+++....
T Consensus 80 ~~WT~eEd~~L~~~~~~~G 98 (128)
T 1h8a_C 80 TSWTEEEDRIIYQAHKRLG 98 (128)
T ss_dssp SCCCHHHHHHHHHHHHHHC
T ss_pred ccCCHHHHHHHHHHHHHHC
Confidence 9999999999988887654
No 9
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=4.4e-22 Score=155.38 Aligned_cols=67 Identities=27% Similarity=0.633 Sum_probs=64.5
Q ss_pred ccCCCCccCCCHHHHHHHHHHHHHhCCCCceecccccccccccccchhhhhhccCCCCCCCCCCHHHH
Q 016021 8 VKQKLRKGLWSPEEDEKLYNYITRFGVGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGMFSQQEE 75 (396)
Q Consensus 8 lkpkikKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~mg~gRt~kQCReRW~n~L~P~lkkg~WT~EED 75 (396)
..+.+++|+||+|||++|+++|.+||..+|..||+.|+ +|+++|||+||.++|+|.+++++||+|||
T Consensus 3 s~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 3 SGSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLH-RKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp SCSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHST-TCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhc-CCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 45789999999999999999999999888999999999 99999999999999999999999999997
No 10
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=3.7e-18 Score=133.12 Aligned_cols=65 Identities=22% Similarity=0.400 Sum_probs=62.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC-CchhhhhhcCCCCCHHHHHHHHHHHhhhhhhhCCCCcCCc
Q 016021 62 RPDLKRGMFSQQEEDLIISLHEVLG-NRWAQIASQLPGRTDNEIKNFWNSCLKKKLMKQGIDPATH 126 (396)
Q Consensus 62 ~P~lkkg~WT~EED~~Llelv~~~G-~kW~~IAk~LpGRT~~qcRnRW~~~Lkk~lkk~~~s~eEd 126 (396)
.|.+++++||+|||++|+++|.+|| ++|.+||+.|+|||+.|||+||+++|++.++++.|+++||
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 5778999999999999999999999 7999999999999999999999999999999999999987
No 11
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.72 E-value=3.1e-18 Score=162.53 Aligned_cols=105 Identities=19% Similarity=0.291 Sum_probs=92.4
Q ss_pred CCCCccCCCHHHHHHHHHHHHHhCCCC-----ceecccccccccccccchhhhhhccCCCCC------------------
Q 016021 10 QKLRKGLWSPEEDEKLYNYITRFGVGC-----WSSVPKLAGLQRCGKSCRLRWINYLRPDLK------------------ 66 (396)
Q Consensus 10 pkikKg~WT~EEDe~L~~lV~kyG~~n-----W~~IAk~mg~gRt~kQCReRW~n~L~P~lk------------------ 66 (396)
+.++|++||+|||++|+++|+++|... |.+||+.|+ |||+.|||.||..+|.+.+.
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~Lp-GRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~Gn 82 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGN 82 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTST-TSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcC-CCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCCC
Confidence 567899999999999999999998643 999999999 99999999999999999986
Q ss_pred -----------CCCCCHHHHHHHHHHHHH-h-------------------------------------------------
Q 016021 67 -----------RGMFSQQEEDLIISLHEV-L------------------------------------------------- 85 (396)
Q Consensus 67 -----------kg~WT~EED~~Llelv~~-~------------------------------------------------- 85 (396)
+..||.+||-.|++.+.+ +
T Consensus 83 ~ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 162 (246)
T 1ign_A 83 LIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYRT 162 (246)
T ss_dssp BCEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------CC
T ss_pred ceeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhcc
Confidence 789999999999999876 1
Q ss_pred ----CC----chhhhhhcCCCCCHHHHHHHHHHHhhhh
Q 016021 86 ----GN----RWAQIASQLPGRTDNEIKNFWNSCLKKK 115 (396)
Q Consensus 86 ----G~----kW~~IAk~LpGRT~~qcRnRW~~~Lkk~ 115 (396)
|. .|..||+.+|+||.+++|+||...|+..
T Consensus 163 ~~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 163 QSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp CCCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred ccccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence 11 6999999999999999999999888665
No 12
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.69 E-value=1.1e-17 Score=133.05 Aligned_cols=58 Identities=21% Similarity=0.319 Sum_probs=47.2
Q ss_pred hhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHHHHHh
Q 016021 54 RLRWINYLRPDLKRGMFSQQEEDLIISLHEVLGNRWAQIASQLPGRTDNEIKNFWNSCL 112 (396)
Q Consensus 54 ReRW~n~L~P~lkkg~WT~EED~~Llelv~~~G~kW~~IAk~LpGRT~~qcRnRW~~~L 112 (396)
.-||.++|+|++++++||+|||++|++++.+||++|.+||+.| |||++|||+||+.+.
T Consensus 10 ~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L~ 67 (73)
T 2llk_A 10 GRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLMK 67 (73)
T ss_dssp ---------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHCS
T ss_pred CcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHHH
Confidence 4589999999999999999999999999999999999999999 999999999998643
No 13
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.68 E-value=1.3e-17 Score=126.29 Aligned_cols=57 Identities=26% Similarity=0.514 Sum_probs=54.4
Q ss_pred cCCCCccCCCHHHHHHHHHHHHHhCCCCceecccccccccccccchhhhhhccCCCCC
Q 016021 9 KQKLRKGLWSPEEDEKLYNYITRFGVGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLK 66 (396)
Q Consensus 9 kpkikKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~mg~gRt~kQCReRW~n~L~P~lk 66 (396)
.|.+++++||+|||++|+++|.+||.++|..||+.|+ +|++.||++||.++|+|.++
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFP-NRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCS-SSCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcc-CCCHHHHHHHHHHHcCCccC
Confidence 5789999999999999999999999878999999998 99999999999999999875
No 14
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=4.3e-17 Score=125.69 Aligned_cols=60 Identities=22% Similarity=0.384 Sum_probs=57.6
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHHHHHhhhhhhhCC
Q 016021 60 YLRPDLKRGMFSQQEEDLIISLHEVLGNRWAQIASQLPGRTDNEIKNFWNSCLKKKLMKQG 120 (396)
Q Consensus 60 ~L~P~lkkg~WT~EED~~Llelv~~~G~kW~~IAk~LpGRT~~qcRnRW~~~Lkk~lkk~~ 120 (396)
+|+|.+++++||+|||++|++++++||++|.+||+ ++|||+.|||+||+.+|++.+++..
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~ 61 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDS 61 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCC
Confidence 79999999999999999999999999999999999 8899999999999999999988764
No 15
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.67 E-value=1.1e-17 Score=144.65 Aligned_cols=83 Identities=22% Similarity=0.366 Sum_probs=77.8
Q ss_pred ccCCCCccCCCHHHHHHHHHHHHHhCCCCceeccccc----ccccccccchhhhhhccC-----CCCCCC-CCCHHHHHH
Q 016021 8 VKQKLRKGLWSPEEDEKLYNYITRFGVGCWSSVPKLA----GLQRCGKSCRLRWINYLR-----PDLKRG-MFSQQEEDL 77 (396)
Q Consensus 8 lkpkikKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~m----g~gRt~kQCReRW~n~L~-----P~lkkg-~WT~EED~~ 77 (396)
++++.++++||+|||+.|+++|++||.++|..|++.+ + +||+.||++||+++|+ |.++++ +|+++|+.+
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~-~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~r 89 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDR 89 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCS-SCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccC-CCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHH
Confidence 4677899999999999999999999998899999975 5 8999999999999998 999999 999999999
Q ss_pred HHHHHHHhCCchhh
Q 016021 78 IISLHEVLGNRWAQ 91 (396)
Q Consensus 78 Llelv~~~G~kW~~ 91 (396)
|++++..+|++|.+
T Consensus 90 v~~~h~~~gn~~~~ 103 (121)
T 2juh_A 90 VLAAHAYWSQQQGK 103 (121)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHccchhc
Confidence 99999999999986
No 16
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.67 E-value=2e-17 Score=121.85 Aligned_cols=52 Identities=42% Similarity=0.857 Sum_probs=49.7
Q ss_pred CCccCCCHHHHHHHHHHHHHhCCCCceecccccccccccccchhhhhhccCCC
Q 016021 12 LRKGLWSPEEDEKLYNYITRFGVGCWSSVPKLAGLQRCGKSCRLRWINYLRPD 64 (396)
Q Consensus 12 ikKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~mg~gRt~kQCReRW~n~L~P~ 64 (396)
++||+||+|||++|+++|.+||..+|..||+.|+ +|+++|||+||.++|+|+
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence 5799999999999999999999888999999998 999999999999999985
No 17
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.65 E-value=1.3e-16 Score=125.32 Aligned_cols=64 Identities=22% Similarity=0.329 Sum_probs=59.0
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHHHHHhhhhhhhCCCCcCC
Q 016021 61 LRPDLKRGMFSQQEEDLIISLHEVLGNRWAQIASQLPGRTDNEIKNFWNSCLKKKLMKQGIDPAT 125 (396)
Q Consensus 61 L~P~lkkg~WT~EED~~Llelv~~~G~kW~~IAk~LpGRT~~qcRnRW~~~Lkk~lkk~~~s~eE 125 (396)
++|.+++++||+|||++|+++|.+||++|..||+.|||||+.|||+||+.++++.++. +.++.+
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~-g~~~~~ 66 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC-GLDKET 66 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS-CTTCCC
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc-CCCCCc
Confidence 5789999999999999999999999999999999999999999999999999998776 555544
No 18
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.65 E-value=3.4e-17 Score=120.51 Aligned_cols=52 Identities=33% Similarity=0.671 Sum_probs=48.3
Q ss_pred CCccCCCHHHHHHHHHHHHHhCCCCceecccccccccccccchhhhhhccCCC
Q 016021 12 LRKGLWSPEEDEKLYNYITRFGVGCWSSVPKLAGLQRCGKSCRLRWINYLRPD 64 (396)
Q Consensus 12 ikKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~mg~gRt~kQCReRW~n~L~P~ 64 (396)
+++++||+|||++|+++|.+||.++|..||+.|+ +|++.||++||.++|+|+
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE 52 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTST-TCCHHHHHHHHHHHHSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence 5789999999999999999999878999999998 999999999999999985
No 19
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.64 E-value=5.8e-17 Score=126.14 Aligned_cols=64 Identities=20% Similarity=0.339 Sum_probs=59.1
Q ss_pred ccCCCCccCCCHHHHHHHHHHHHHhCCCCceeccccccc-ccccccchhhhhhccCCCCCCCCCC
Q 016021 8 VKQKLRKGLWSPEEDEKLYNYITRFGVGCWSSVPKLAGL-QRCGKSCRLRWINYLRPDLKRGMFS 71 (396)
Q Consensus 8 lkpkikKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~mg~-gRt~kQCReRW~n~L~P~lkkg~WT 71 (396)
.+++.++++||+|||++|+++|++||.++|..||+.|++ +|++.||++||.++|+|.+.++..+
T Consensus 4 ~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~ 68 (69)
T 1ity_A 4 KHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE 68 (69)
T ss_dssp TTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence 467789999999999999999999998889999999975 8999999999999999999988764
No 20
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.64 E-value=9.6e-17 Score=138.93 Aligned_cols=79 Identities=22% Similarity=0.313 Sum_probs=72.7
Q ss_pred cCCCCccCCCHHHHHHHHHHHHHhCCCCceeccccc----ccccccccchhhhhhcc-----CCCCCCCCCCHHH-HHHH
Q 016021 9 KQKLRKGLWSPEEDEKLYNYITRFGVGCWSSVPKLA----GLQRCGKSCRLRWINYL-----RPDLKRGMFSQQE-EDLI 78 (396)
Q Consensus 9 kpkikKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~m----g~gRt~kQCReRW~n~L-----~P~lkkg~WT~EE-D~~L 78 (396)
..+.++++||+|||+.|+++|++||.++|..|++.. . +||+.||++||++++ +|.++++.|+++| +.+|
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~-~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v 104 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVH-HRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRV 104 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSC-CCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccC-CCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHH
Confidence 455679999999999999999999998999999864 4 899999999999999 8999999999999 8999
Q ss_pred HHHHHHhCCc
Q 016021 79 ISLHEVLGNR 88 (396)
Q Consensus 79 lelv~~~G~k 88 (396)
++++..+|++
T Consensus 105 ~~~h~~~g~~ 114 (122)
T 2roh_A 105 LAAQAYWSVD 114 (122)
T ss_dssp HHHHHHHHSS
T ss_pred HHHHHHHhhH
Confidence 9999999975
No 21
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.63 E-value=2e-16 Score=135.99 Aligned_cols=76 Identities=16% Similarity=0.324 Sum_probs=71.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHHHHHhhhhhhhCCCCcCCcchhHHHHHHHH
Q 016021 62 RPDLKRGMFSQQEEDLIISLHEVLGNRWAQIASQLPGRTDNEIKNFWNSCLKKKLMKQGIDPATHKPIADIIEIEV 137 (396)
Q Consensus 62 ~P~lkkg~WT~EED~~Llelv~~~G~kW~~IAk~LpGRT~~qcRnRW~~~Lkk~lkk~~~s~eEd~~L~~ive~~~ 137 (396)
.+..++|+||+|||++|+++|.+||.+|..||+.|||||+.||+.||.++|.+.++++.|+++||..|.+++....
T Consensus 6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G 81 (126)
T 3osg_A 6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYG 81 (126)
T ss_dssp -CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHC
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHC
Confidence 4568899999999999999999999999999999999999999999999999999999999999999999887654
No 22
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.63 E-value=2.2e-16 Score=119.51 Aligned_cols=56 Identities=21% Similarity=0.418 Sum_probs=52.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC-CchhhhhhcCCCCCHHHHHHHHHHHhhhhhh
Q 016021 62 RPDLKRGMFSQQEEDLIISLHEVLG-NRWAQIASQLPGRTDNEIKNFWNSCLKKKLM 117 (396)
Q Consensus 62 ~P~lkkg~WT~EED~~Llelv~~~G-~kW~~IAk~LpGRT~~qcRnRW~~~Lkk~lk 117 (396)
+|.+++++||+|||++|+++|.+|| ++|.+||+.|+|||+.|||+||+++|++.++
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCccC
Confidence 5789999999999999999999999 6999999999999999999999999988653
No 23
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.62 E-value=2.5e-16 Score=130.72 Aligned_cols=74 Identities=23% Similarity=0.437 Sum_probs=69.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCC-chhhhhhcCCCCCHHHHHHHHHHHhhhhhhhCCCCcCCcchhHHHHHHHH
Q 016021 64 DLKRGMFSQQEEDLIISLHEVLGN-RWAQIASQLPGRTDNEIKNFWNSCLKKKLMKQGIDPATHKPIADIIEIEV 137 (396)
Q Consensus 64 ~lkkg~WT~EED~~Llelv~~~G~-kW~~IAk~LpGRT~~qcRnRW~~~Lkk~lkk~~~s~eEd~~L~~ive~~~ 137 (396)
++++|+||+|||++|+++|.+||. +|..||+.|||||+.||+.||.++|.+.++++.|+++||..|..++....
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G 75 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLG 75 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhC
Confidence 478999999999999999999996 69999999999999999999999999999999999999999988887654
No 24
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.60 E-value=7.7e-16 Score=113.24 Aligned_cols=50 Identities=30% Similarity=0.571 Sum_probs=46.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC-chhhhhhcCCCCCHHHHHHHHHHHhhh
Q 016021 65 LKRGMFSQQEEDLIISLHEVLGN-RWAQIASQLPGRTDNEIKNFWNSCLKK 114 (396)
Q Consensus 65 lkkg~WT~EED~~Llelv~~~G~-kW~~IAk~LpGRT~~qcRnRW~~~Lkk 114 (396)
+++++||+|||++|+++|.+||. +|..||+.|||||+.||++||+++|++
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 51 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 47899999999999999999998 999999999999999999999999976
No 25
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.59 E-value=1.6e-15 Score=117.91 Aligned_cols=62 Identities=23% Similarity=0.295 Sum_probs=56.6
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHhC-CchhhhhhcCC--CCCHHHHHHHHHHHhhhhhhhCCC
Q 016021 60 YLRPDLKRGMFSQQEEDLIISLHEVLG-NRWAQIASQLP--GRTDNEIKNFWNSCLKKKLMKQGI 121 (396)
Q Consensus 60 ~L~P~lkkg~WT~EED~~Llelv~~~G-~kW~~IAk~Lp--GRT~~qcRnRW~~~Lkk~lkk~~~ 121 (396)
...+..++++||+|||++|+++|.+|| ++|..||+.|+ |||+.|||+||.++|++.+.+...
T Consensus 3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~ 67 (69)
T 1ity_A 3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDS 67 (69)
T ss_dssp CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCC
Confidence 345677899999999999999999999 69999999999 999999999999999999887654
No 26
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.59 E-value=1.3e-15 Score=112.22 Aligned_cols=50 Identities=30% Similarity=0.654 Sum_probs=47.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC-chhhhhhcCCCCCHHHHHHHHHHHhhh
Q 016021 65 LKRGMFSQQEEDLIISLHEVLGN-RWAQIASQLPGRTDNEIKNFWNSCLKK 114 (396)
Q Consensus 65 lkkg~WT~EED~~Llelv~~~G~-kW~~IAk~LpGRT~~qcRnRW~~~Lkk 114 (396)
+++++||+|||++|+++|.+||. +|..||+.|+|||+.|||+||.++|++
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 57899999999999999999997 699999999999999999999999876
No 27
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=1.2e-16 Score=123.15 Aligned_cols=59 Identities=22% Similarity=0.328 Sum_probs=54.6
Q ss_pred cccCCCCccCCCHHHHHHHHHHHHHhCCCCceecccccccccccccchhhhhhccCCCCCCC
Q 016021 7 CVKQKLRKGLWSPEEDEKLYNYITRFGVGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRG 68 (396)
Q Consensus 7 ~lkpkikKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~mg~gRt~kQCReRW~n~L~P~lkkg 68 (396)
+|+|.+++++||+|||++|+++|++||. +|..||+ ++ +|+++|||+||.++|+|.++++
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~-gRt~~qcr~Rw~~~l~~~~~~~ 60 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-II-GRTAAQCLEHYEFLLDKAAQRD 60 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HH-SSCHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-cc-CcCHHHHHHHHHHHhChHhcCC
Confidence 6899999999999999999999999997 7999999 66 7999999999999999877654
No 28
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.58 E-value=1e-15 Score=128.09 Aligned_cols=70 Identities=16% Similarity=0.285 Sum_probs=66.1
Q ss_pred CCCCCHHHHHHHHHHHHHhCC-chhhhhhcCCCCCHHHHHHHHHHHhhhhhhhCCCCcCCcchhHHHHHHH
Q 016021 67 RGMFSQQEEDLIISLHEVLGN-RWAQIASQLPGRTDNEIKNFWNSCLKKKLMKQGIDPATHKPIADIIEIE 136 (396)
Q Consensus 67 kg~WT~EED~~Llelv~~~G~-kW~~IAk~LpGRT~~qcRnRW~~~Lkk~lkk~~~s~eEd~~L~~ive~~ 136 (396)
+|+||+|||++|+++|.+||. +|..||..|||||+.||+.||.++|.+.++++.|+++||..|..++...
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~ 71 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEY 71 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHh
Confidence 589999999999999999996 8999999999999999999999999999999999999999998887654
No 29
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.58 E-value=3.8e-16 Score=120.81 Aligned_cols=56 Identities=23% Similarity=0.452 Sum_probs=49.6
Q ss_pred CCCccCCCHHHHHHHHHHHHHhCCCCceecccccc-cccccccchhhhhhccCCCCC
Q 016021 11 KLRKGLWSPEEDEKLYNYITRFGVGCWSSVPKLAG-LQRCGKSCRLRWINYLRPDLK 66 (396)
Q Consensus 11 kikKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~mg-~gRt~kQCReRW~n~L~P~lk 66 (396)
..+|++||+|||++|+++|++||.++|..||+.++ .+|++.|||+||+++++|+++
T Consensus 8 ~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN 64 (64)
T 3sjm_A 8 ITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN 64 (64)
T ss_dssp --CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence 35789999999999999999999989999999754 289999999999999998864
No 30
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.58 E-value=5.5e-16 Score=117.79 Aligned_cols=56 Identities=16% Similarity=0.422 Sum_probs=52.2
Q ss_pred cCCCCccCCCHHHHHHHHHHHHHhCCCCceecccccccccccccchhhhhhccCCCC
Q 016021 9 KQKLRKGLWSPEEDEKLYNYITRFGVGCWSSVPKLAGLQRCGKSCRLRWINYLRPDL 65 (396)
Q Consensus 9 kpkikKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~mg~gRt~kQCReRW~n~L~P~l 65 (396)
.+.+.+++||+|||++|+++|++||.++|..||+.|+ +|+++|||+||.++|.+..
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~r~~~~l~~~~ 58 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKYFSGPS 58 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHT-TSCHHHHHHHHHHHTTCSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhC-CCCHHHHHHHHHHHccCCC
Confidence 4678999999999999999999999888999999998 9999999999999998653
No 31
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.57 E-value=1.8e-15 Score=130.73 Aligned_cols=71 Identities=25% Similarity=0.433 Sum_probs=67.1
Q ss_pred CCCCCHHHHHHHHHHHHHhC-CchhhhhhcCCCCCHHHHHHHHHHHhhhhhhhCCCCcCCcchhHHHHHHHH
Q 016021 67 RGMFSQQEEDLIISLHEVLG-NRWAQIASQLPGRTDNEIKNFWNSCLKKKLMKQGIDPATHKPIADIIEIEV 137 (396)
Q Consensus 67 kg~WT~EED~~Llelv~~~G-~kW~~IAk~LpGRT~~qcRnRW~~~Lkk~lkk~~~s~eEd~~L~~ive~~~ 137 (396)
+|+||+|||++|+++|.+|| .+|..||..|||||+.||+.||.++|.+.++++.|+++||..|.+++....
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G 73 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLG 73 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHC
Confidence 78999999999999999999 689999999999999999999999999999999999999999988876544
No 32
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.55 E-value=5.6e-15 Score=109.41 Aligned_cols=49 Identities=24% Similarity=0.367 Sum_probs=46.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhC-CchhhhhhcCC--CCCHHHHHHHHHHHhhh
Q 016021 66 KRGMFSQQEEDLIISLHEVLG-NRWAQIASQLP--GRTDNEIKNFWNSCLKK 114 (396)
Q Consensus 66 kkg~WT~EED~~Llelv~~~G-~kW~~IAk~Lp--GRT~~qcRnRW~~~Lkk 114 (396)
++++||+|||++|+++|.+|| ++|..||+.|+ |||+.||++||.++++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~ 52 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL 52 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence 578999999999999999999 69999999999 99999999999999874
No 33
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.55 E-value=4.4e-15 Score=112.78 Aligned_cols=53 Identities=17% Similarity=0.268 Sum_probs=49.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC-CchhhhhhcCCCCCHHHHHHHHHHHhhh
Q 016021 62 RPDLKRGMFSQQEEDLIISLHEVLG-NRWAQIASQLPGRTDNEIKNFWNSCLKK 114 (396)
Q Consensus 62 ~P~lkkg~WT~EED~~Llelv~~~G-~kW~~IAk~LpGRT~~qcRnRW~~~Lkk 114 (396)
.+.+.+++||+|||++|+++|.+|| ++|.+||+.|+|||+.|||+||.++|.+
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~ 56 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSG 56 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccC
Confidence 4678999999999999999999999 7999999999999999999999998864
No 34
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=7.2e-15 Score=115.74 Aligned_cols=62 Identities=16% Similarity=0.165 Sum_probs=56.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC------CchhhhhhcCCCCCHHHHHHHHHHHhhhhhhhCCCCc
Q 016021 62 RPDLKRGMFSQQEEDLIISLHEVLG------NRWAQIASQLPGRTDNEIKNFWNSCLKKKLMKQGIDP 123 (396)
Q Consensus 62 ~P~lkkg~WT~EED~~Llelv~~~G------~kW~~IAk~LpGRT~~qcRnRW~~~Lkk~lkk~~~s~ 123 (396)
+|.+++++||+|||++|+++|.+|| ++|.+||+.|+|||+.|||+||+++|++.++.+...|
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g~~~p 70 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAGIPVS 70 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTCSCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCCCC
Confidence 5788999999999999999999999 7899999999999999999999999998877654433
No 35
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=1.3e-15 Score=119.95 Aligned_cols=60 Identities=22% Similarity=0.389 Sum_probs=55.9
Q ss_pred cCCCCccCCCHHHHHHHHHHHHHhCC-----CCceecccccccccccccchhhhhhccCCCCCCCC
Q 016021 9 KQKLRKGLWSPEEDEKLYNYITRFGV-----GCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGM 69 (396)
Q Consensus 9 kpkikKg~WT~EEDe~L~~lV~kyG~-----~nW~~IAk~mg~gRt~kQCReRW~n~L~P~lkkg~ 69 (396)
+|.+++++||+|||++|+++|.+||. .+|..||+.|+ +||+.|||+||++||.+.++.|.
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~-~Rt~~qcr~r~~~~l~~~~k~g~ 67 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELG-NRTAKQVASQVQKYFIKLTKAGI 67 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHS-SSCHHHHHHHHHHHHGGGSTTCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhcCC
Confidence 68899999999999999999999996 67999999999 99999999999999998877664
No 36
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.52 E-value=3.6e-15 Score=118.48 Aligned_cols=63 Identities=21% Similarity=0.311 Sum_probs=49.1
Q ss_pred CCCcccccCCCCccCCCHHHHHHHHHHHHHhCCCCceecccccccccccccchhhhhhccCCCCCCC
Q 016021 2 GRHSCCVKQKLRKGLWSPEEDEKLYNYITRFGVGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRG 68 (396)
Q Consensus 2 gRw~~~lkpkikKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~mg~gRt~kQCReRW~n~L~P~lkkg 68 (396)
+||..+++|++++|+||+|||++|+++|++||.+ |..||+.| +|++.||+.||.. |....+.|
T Consensus 11 ~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~k-W~~IA~~l--gRt~~q~knRw~~-L~~~~~~G 73 (73)
T 2llk_A 11 RENLYFQGDRNHVGKYTPEEIEKLKELRIKHGND-WATIGAAL--GRSASSVKDRCRL-MKDTCNTG 73 (73)
T ss_dssp --------CCCCCCSSCHHHHHHHHHHHHHHSSC-HHHHHHHH--TSCHHHHHHHHHH-CSCCCSCC
T ss_pred cceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCC-HHHHHHHh--CCCHHHHHHHHHH-HHHHccCC
Confidence 5899999999999999999999999999999976 99999999 6999999999974 65555443
No 37
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.51 E-value=3e-15 Score=110.82 Aligned_cols=50 Identities=24% Similarity=0.483 Sum_probs=46.6
Q ss_pred CccCCCHHHHHHHHHHHHHhCCCCceeccccccc-ccccccchhhhhhccC
Q 016021 13 RKGLWSPEEDEKLYNYITRFGVGCWSSVPKLAGL-QRCGKSCRLRWINYLR 62 (396)
Q Consensus 13 kKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~mg~-gRt~kQCReRW~n~L~ 62 (396)
++++||+|||++|+++|++||.++|..||+.+++ +|++.||++||.+++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 5789999999999999999998899999999975 6999999999999875
No 38
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.51 E-value=1.5e-14 Score=111.86 Aligned_cols=52 Identities=23% Similarity=0.455 Sum_probs=47.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHhC-CchhhhhhcCC--CCCHHHHHHHHHHHhhhhh
Q 016021 65 LKRGMFSQQEEDLIISLHEVLG-NRWAQIASQLP--GRTDNEIKNFWNSCLKKKL 116 (396)
Q Consensus 65 lkkg~WT~EED~~Llelv~~~G-~kW~~IAk~Lp--GRT~~qcRnRW~~~Lkk~l 116 (396)
.++++||+|||++|+++|.+|| ++|..||+.++ |||+.|||+||.+++++.+
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~gl 63 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 63 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCC
Confidence 4789999999999999999999 58999999865 9999999999999998764
No 39
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.51 E-value=3.8e-15 Score=112.62 Aligned_cols=52 Identities=19% Similarity=0.461 Sum_probs=47.8
Q ss_pred CCCCccCCCHHHHHHHHHHHHHhCCCCceecccccccccccccchhhhhhcc
Q 016021 10 QKLRKGLWSPEEDEKLYNYITRFGVGCWSSVPKLAGLQRCGKSCRLRWINYL 61 (396)
Q Consensus 10 pkikKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~mg~gRt~kQCReRW~n~L 61 (396)
..+.+++||+|||++|+++|++||.++|..||+.|+.+|+++|||+||.+++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 3466889999999999999999998899999999986899999999999875
No 40
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.48 E-value=4.1e-14 Score=106.99 Aligned_cols=50 Identities=28% Similarity=0.411 Sum_probs=46.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhC-CchhhhhhcCC-CCCHHHHHHHHHHHh
Q 016021 63 PDLKRGMFSQQEEDLIISLHEVLG-NRWAQIASQLP-GRTDNEIKNFWNSCL 112 (396)
Q Consensus 63 P~lkkg~WT~EED~~Llelv~~~G-~kW~~IAk~Lp-GRT~~qcRnRW~~~L 112 (396)
..+.+++||+|||++|+++|.+|| ++|.+||+.|+ |||+.|||+||.+++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999999 89999999999 999999999998764
No 41
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.47 E-value=5.8e-15 Score=115.81 Aligned_cols=59 Identities=22% Similarity=0.343 Sum_probs=54.6
Q ss_pred cccCCCCccCCCHHHHHHHHHHHHHhCCCCceecccccccccccccchhhhhhccCCCCCC
Q 016021 7 CVKQKLRKGLWSPEEDEKLYNYITRFGVGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKR 67 (396)
Q Consensus 7 ~lkpkikKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~mg~gRt~kQCReRW~n~L~P~lkk 67 (396)
+..|.+++++||+|||++|+++|.+||. +|..||+.|+ +|++.||+.||.++|.+.++.
T Consensus 2 s~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~-~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 2 SSGSSGYSVKWTIEEKELFEQGLAKFGR-RWTKISKLIG-SRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCCSSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHS-SSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCCcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhc
Confidence 4578999999999999999999999997 7999999998 999999999999999876665
No 42
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.15 E-value=1.1e-14 Score=119.17 Aligned_cols=56 Identities=21% Similarity=0.240 Sum_probs=53.2
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHHHHHhhhh
Q 016021 60 YLRPDLKRGMFSQQEEDLIISLHEVLGNRWAQIASQLPGRTDNEIKNFWNSCLKKK 115 (396)
Q Consensus 60 ~L~P~lkkg~WT~EED~~Llelv~~~G~kW~~IAk~LpGRT~~qcRnRW~~~Lkk~ 115 (396)
.++|.+++++||+|||++|+++|.+||++|..||..|+|||+.||++||+.++++.
T Consensus 9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 9 SGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 56789999999999999999999999999999999999999999999999998775
No 43
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.36 E-value=3.1e-13 Score=114.20 Aligned_cols=79 Identities=23% Similarity=0.273 Sum_probs=67.3
Q ss_pred ccCCCCccCCCHHHHHHHHHHHHHhCCCCceecccccc---cccccccchhhhhhcc-----CCCCCCCCCCHHHHHH-H
Q 016021 8 VKQKLRKGLWSPEEDEKLYNYITRFGVGCWSSVPKLAG---LQRCGKSCRLRWINYL-----RPDLKRGMFSQQEEDL-I 78 (396)
Q Consensus 8 lkpkikKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~mg---~gRt~kQCReRW~n~L-----~P~lkkg~WT~EED~~-L 78 (396)
.+++.++++||+|||+.|+++|++||.++|..|++.+. .+||+.+|++||++++ +|.+++|.-+++|-.. +
T Consensus 7 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~rv 86 (105)
T 2aje_A 7 DPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNRV 86 (105)
T ss_dssp --CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHHH
Confidence 45778899999999999999999999989999998652 3899999999999998 6999999888877665 7
Q ss_pred HHHHHHhC
Q 016021 79 ISLHEVLG 86 (396)
Q Consensus 79 lelv~~~G 86 (396)
+++...+|
T Consensus 87 ~~~~~~~~ 94 (105)
T 2aje_A 87 LNAHGYWT 94 (105)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776655
No 44
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.35 E-value=1e-12 Score=113.62 Aligned_cols=79 Identities=18% Similarity=0.273 Sum_probs=62.3
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhCC-chhhhhhc----CCCCCHHHHHHHHHHHhh-----hhhhhC-CCCcCCcchh
Q 016021 61 LRPDLKRGMFSQQEEDLIISLHEVLGN-RWAQIASQ----LPGRTDNEIKNFWNSCLK-----KKLMKQ-GIDPATHKPI 129 (396)
Q Consensus 61 L~P~lkkg~WT~EED~~Llelv~~~G~-kW~~IAk~----LpGRT~~qcRnRW~~~Lk-----k~lkk~-~~s~eEd~~L 129 (396)
+.+..++++||.|||+.|+++|.+||. +|..|++. |+|||+.+||+||+++++ +.++++ .+.++++..+
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~rv 90 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRV 90 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHHH
Confidence 556778999999999999999999997 99999998 499999999999999998 555554 4444444555
Q ss_pred HHHHHHHHHh
Q 016021 130 ADIIEIEVKE 139 (396)
Q Consensus 130 ~~ive~~~k~ 139 (396)
..+.......
T Consensus 91 ~~~h~~~gn~ 100 (121)
T 2juh_A 91 LAAHAYWSQQ 100 (121)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHccc
Confidence 5555543333
No 45
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.35 E-value=4.7e-13 Score=108.68 Aligned_cols=69 Identities=25% Similarity=0.403 Sum_probs=59.7
Q ss_pred cCCCHHHHHHHHHHHHHhCCCCceecccc----cccccccccchhhhhhcc-----CCCCCCC-CCCHHHHHHHHHHHHH
Q 016021 15 GLWSPEEDEKLYNYITRFGVGCWSSVPKL----AGLQRCGKSCRLRWINYL-----RPDLKRG-MFSQQEEDLIISLHEV 84 (396)
Q Consensus 15 g~WT~EEDe~L~~lV~kyG~~nW~~IAk~----mg~gRt~kQCReRW~n~L-----~P~lkkg-~WT~EED~~Llelv~~ 84 (396)
++||+|||++|+++|++||.++|..|++. ++ +||+.||++||++++ +|.+++| +..++...+++.+...
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~-~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~ 79 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY 79 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCT-TSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccC-CCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence 47999999999999999999899999985 66 899999999999988 6776666 6777777888887653
No 46
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.34 E-value=1e-12 Score=104.33 Aligned_cols=52 Identities=12% Similarity=0.241 Sum_probs=47.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhC----CchhhhhhcCCCCCHHHHHHHHHHHhhh
Q 016021 63 PDLKRGMFSQQEEDLIISLHEVLG----NRWAQIASQLPGRTDNEIKNFWNSCLKK 114 (396)
Q Consensus 63 P~lkkg~WT~EED~~Llelv~~~G----~kW~~IAk~LpGRT~~qcRnRW~~~Lkk 114 (396)
+.+.+++||.|||.+|++++.+|| ++|.+||+.|||||..||++||+.+++.
T Consensus 14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~d 69 (73)
T 2cqr_A 14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVSG 69 (73)
T ss_dssp TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHSS
T ss_pred cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 456788999999999999999999 6899999999999999999999987653
No 47
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.32 E-value=5e-13 Score=107.37 Aligned_cols=50 Identities=20% Similarity=0.427 Sum_probs=46.5
Q ss_pred cCCCCccCCCHHHHHHHHHHHHHhCCCCceecccccccccccccchhhhhhc
Q 016021 9 KQKLRKGLWSPEEDEKLYNYITRFGVGCWSSVPKLAGLQRCGKSCRLRWINY 60 (396)
Q Consensus 9 kpkikKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~mg~gRt~kQCReRW~n~ 60 (396)
+....+++||+|||++|+++|++|| .+|..||+.|+ +||+.||+.||.++
T Consensus 13 ~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~-~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 13 KGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVG-SRTQDECILHFLRL 62 (79)
T ss_dssp CSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHS-SCCHHHHHHHHTTS
T ss_pred cccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcC-CCCHHHHHHHHHHh
Confidence 3456789999999999999999999 78999999999 99999999999998
No 48
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.30 E-value=1.8e-12 Score=123.20 Aligned_cols=73 Identities=21% Similarity=0.404 Sum_probs=61.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCc------hhhhhhcCCCCCHHHHHHHHHHHhhhhhh-------------------
Q 016021 63 PDLKRGMFSQQEEDLIISLHEVLGNR------WAQIASQLPGRTDNEIKNFWNSCLKKKLM------------------- 117 (396)
Q Consensus 63 P~lkkg~WT~EED~~Llelv~~~G~k------W~~IAk~LpGRT~~qcRnRW~~~Lkk~lk------------------- 117 (396)
+.+++++||+|||++|+++|.++|++ |.+||+.|||||++|||+||+.+|++.+.
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~Gn~ 83 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGNL 83 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSCB
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCCCc
Confidence 45788999999999999999999975 99999999999999999999999999986
Q ss_pred ----------hCCCCcCCcchhHHHHHH
Q 016021 118 ----------KQGIDPATHKPIADIIEI 135 (396)
Q Consensus 118 ----------k~~~s~eEd~~L~~ive~ 135 (396)
+..|+.+||-.|...+..
T Consensus 84 ikis~lp~siK~rftaeeDy~L~~~i~~ 111 (246)
T 1ign_A 84 IKTKVLPPSIKRKFSADEDYTLAIAVKK 111 (246)
T ss_dssp CEESSCCCCSCCCCCHHHHHHHHHHHHH
T ss_pred eeeeccCccccCccchhccHHHHHHHHH
Confidence 667777777777666554
No 49
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.29 E-value=1.4e-12 Score=104.77 Aligned_cols=48 Identities=17% Similarity=0.300 Sum_probs=44.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHHHHH
Q 016021 64 DLKRGMFSQQEEDLIISLHEVLGNRWAQIASQLPGRTDNEIKNFWNSC 111 (396)
Q Consensus 64 ~lkkg~WT~EED~~Llelv~~~G~kW~~IAk~LpGRT~~qcRnRW~~~ 111 (396)
...+++||+|||++|+++|.+||++|.+||+.|++||+.||++||..+
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 456889999999999999999999999999999999999999999755
No 50
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.27 E-value=4.3e-12 Score=109.84 Aligned_cols=72 Identities=19% Similarity=0.338 Sum_probs=58.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC-chhhhhhc----CCCCCHHHHHHHHHHHhh-----hhhhhCCCCcCC-cchhHH
Q 016021 63 PDLKRGMFSQQEEDLIISLHEVLGN-RWAQIASQ----LPGRTDNEIKNFWNSCLK-----KKLMKQGIDPAT-HKPIAD 131 (396)
Q Consensus 63 P~lkkg~WT~EED~~Llelv~~~G~-kW~~IAk~----LpGRT~~qcRnRW~~~Lk-----k~lkk~~~s~eE-d~~L~~ 131 (396)
...++++||.|||+.|+++|++||. +|..|++. |+|||+.+||+||.++++ +.++++.+.++| +..+..
T Consensus 27 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v~~ 106 (122)
T 2roh_A 27 QRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRVLA 106 (122)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHHHH
Confidence 3457889999999999999999996 99999986 489999999999999994 566666666666 344444
Q ss_pred HHH
Q 016021 132 IIE 134 (396)
Q Consensus 132 ive 134 (396)
++.
T Consensus 107 ~h~ 109 (122)
T 2roh_A 107 AQA 109 (122)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 51
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.91 E-value=5e-13 Score=109.25 Aligned_cols=55 Identities=20% Similarity=0.420 Sum_probs=51.1
Q ss_pred cccCCCCccCCCHHHHHHHHHHHHHhCCCCceecccccccccccccchhhhhhccCC
Q 016021 7 CVKQKLRKGLWSPEEDEKLYNYITRFGVGCWSSVPKLAGLQRCGKSCRLRWINYLRP 63 (396)
Q Consensus 7 ~lkpkikKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~mg~gRt~kQCReRW~n~L~P 63 (396)
.+.|.+.+|+||+|||++|+++|.+||. +|..||+.|+ +||+.||+.||.++|..
T Consensus 9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l~-gRt~~q~k~r~~~~lrk 63 (89)
T 2ltp_A 9 SGRENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIARMVG-SKTVSQCKNFYFNYKKR 63 (89)
Confidence 4678899999999999999999999996 6999999999 99999999999998864
No 52
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.23 E-value=1.6e-12 Score=103.12 Aligned_cols=54 Identities=11% Similarity=0.409 Sum_probs=48.7
Q ss_pred ccCCCCccCCCHHHHHHHHHHHHHhC---CCCceecccccccccccccchhhhhhccC
Q 016021 8 VKQKLRKGLWSPEEDEKLYNYITRFG---VGCWSSVPKLAGLQRCGKSCRLRWINYLR 62 (396)
Q Consensus 8 lkpkikKg~WT~EEDe~L~~lV~kyG---~~nW~~IAk~mg~gRt~kQCReRW~n~L~ 62 (396)
.++...+++||+|||++|+++|.+|| +..|.+||+.|+ |||.+||+.||.+++.
T Consensus 12 ~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vp-GRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 12 ERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDCIARYKLLVS 68 (73)
T ss_dssp CTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCS-SSCHHHHHHHHHHHHS
T ss_pred cccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 45677899999999999999999999 356999999999 9999999999998764
No 53
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.21 E-value=1.7e-11 Score=103.56 Aligned_cols=52 Identities=25% Similarity=0.408 Sum_probs=47.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCC-chhhhhhcC----CCCCHHHHHHHHHHHhh
Q 016021 62 RPDLKRGMFSQQEEDLIISLHEVLGN-RWAQIASQL----PGRTDNEIKNFWNSCLK 113 (396)
Q Consensus 62 ~P~lkkg~WT~EED~~Llelv~~~G~-kW~~IAk~L----pGRT~~qcRnRW~~~Lk 113 (396)
.+..++++||+|||+.|+++|++||. +|..|++.+ +|||+.+||+||.++++
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk 64 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVH 64 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHh
Confidence 34568899999999999999999997 999999965 89999999999999996
No 54
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.20 E-value=1.9e-11 Score=99.26 Aligned_cols=48 Identities=25% Similarity=0.477 Sum_probs=44.5
Q ss_pred CCCCHHHHHHHHHHHHHhCC-chhhhhhc----CCCCCHHHHHHHHHHHhhhh
Q 016021 68 GMFSQQEEDLIISLHEVLGN-RWAQIASQ----LPGRTDNEIKNFWNSCLKKK 115 (396)
Q Consensus 68 g~WT~EED~~Llelv~~~G~-kW~~IAk~----LpGRT~~qcRnRW~~~Lkk~ 115 (396)
++||+|||+.|+++|++||. +|+.|++. |+|||+.+||+||+++++..
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~ 53 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA 53 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhc
Confidence 48999999999999999997 99999995 89999999999999999743
No 55
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.17 E-value=3.3e-11 Score=92.98 Aligned_cols=49 Identities=18% Similarity=0.388 Sum_probs=45.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCchhhhh---hcCCCCCHHHHHHHHHHHhhh
Q 016021 66 KRGMFSQQEEDLIISLHEVLGNRWAQIA---SQLPGRTDNEIKNFWNSCLKK 114 (396)
Q Consensus 66 kkg~WT~EED~~Llelv~~~G~kW~~IA---k~LpGRT~~qcRnRW~~~Lkk 114 (396)
++.+||+|||+.|++.|++||.+|..|+ ..+++||...+++||+++.+.
T Consensus 7 ~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~ 58 (62)
T 1x58_A 7 GRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISG 58 (62)
T ss_dssp CSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence 5789999999999999999999999999 567999999999999988875
No 56
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.12 E-value=7.1e-11 Score=97.74 Aligned_cols=50 Identities=24% Similarity=0.424 Sum_probs=45.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhC----CchhhhhhcCCCCCHHHHHHHHHHHhhhh
Q 016021 66 KRGMFSQQEEDLIISLHEVLG----NRWAQIASQLPGRTDNEIKNFWNSCLKKK 115 (396)
Q Consensus 66 kkg~WT~EED~~Llelv~~~G----~kW~~IAk~LpGRT~~qcRnRW~~~Lkk~ 115 (396)
.+++||.|||++|++++.+|| ++|.+||+.|||||.++|++||+.+++..
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv 60 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDI 60 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 467999999999999999996 67999999999999999999999887654
No 57
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=98.98 E-value=7.1e-10 Score=91.87 Aligned_cols=67 Identities=15% Similarity=0.207 Sum_probs=60.7
Q ss_pred cccchhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCchhhhhhcC-----CCCCHHHHHHHHHHHhhhhhhhCC
Q 016021 50 GKSCRLRWINYLRPDLKRGMFSQQEEDLIISLHEVLGNRWAQIASQL-----PGRTDNEIKNFWNSCLKKKLMKQG 120 (396)
Q Consensus 50 ~kQCReRW~n~L~P~lkkg~WT~EED~~Llelv~~~G~kW~~IAk~L-----pGRT~~qcRnRW~~~Lkk~lkk~~ 120 (396)
+.=|.++|.++|.+ .+||.||+..|++|+++||.+|..|+..+ ++||..++|+||..+.++.++..+
T Consensus 17 ~~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r~ 88 (93)
T 3hm5_A 17 PVYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRA 88 (93)
T ss_dssp CCCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred CccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 35678999999976 79999999999999999999999999998 589999999999999998877654
No 58
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.92 E-value=1.8e-10 Score=95.27 Aligned_cols=48 Identities=13% Similarity=0.316 Sum_probs=43.4
Q ss_pred CccCCCHHHHHHHHHHHHHhC---CCCceecccccccccccccchhhhhhcc
Q 016021 13 RKGLWSPEEDEKLYNYITRFG---VGCWSSVPKLAGLQRCGKSCRLRWINYL 61 (396)
Q Consensus 13 kKg~WT~EEDe~L~~lV~kyG---~~nW~~IAk~mg~gRt~kQCReRW~n~L 61 (396)
.++.||+|||++|.+++.+|| +..|..||+.|+ |||..||+.||.+++
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vp-GRT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVE-GRTPEEVKKHYEILV 57 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST-TCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 467899999999999999997 456999999999 999999999999864
No 59
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.91 E-value=1.5e-09 Score=82.66 Aligned_cols=48 Identities=13% Similarity=0.145 Sum_probs=44.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHHHHHhh
Q 016021 66 KRGMFSQQEEDLIISLHEVLGNRWAQIASQLPGRTDNEIKNFWNSCLK 113 (396)
Q Consensus 66 kkg~WT~EED~~Llelv~~~G~kW~~IAk~LpGRT~~qcRnRW~~~Lk 113 (396)
..++||+||++++++++.+||.+|..||..||+||..+|+.+|....+
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~Kk 58 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTKK 58 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHTC
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhcC
Confidence 356999999999999999999999999999999999999999976544
No 60
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.76 E-value=8.1e-09 Score=81.61 Aligned_cols=51 Identities=14% Similarity=0.229 Sum_probs=45.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhC----CchhhhhhcCCCCCHHHHHHHHHHHhhhh
Q 016021 64 DLKRGMFSQQEEDLIISLHEVLG----NRWAQIASQLPGRTDNEIKNFWNSCLKKK 115 (396)
Q Consensus 64 ~lkkg~WT~EED~~Llelv~~~G----~kW~~IAk~LpGRT~~qcRnRW~~~Lkk~ 115 (396)
..+.+.||.|||++|.+++.+|+ ++|.+||+.+ |||..+|++||+.+.+..
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d~ 59 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDSV 59 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHhc
Confidence 35678999999999999999997 5799999998 999999999998886653
No 61
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.67 E-value=8.3e-09 Score=78.55 Aligned_cols=51 Identities=10% Similarity=0.200 Sum_probs=45.3
Q ss_pred ccCCCCccCCCHHHHHHHHHHHHHhCCCCceecccccccccccccchhhhhhc
Q 016021 8 VKQKLRKGLWSPEEDEKLYNYITRFGVGCWSSVPKLAGLQRCGKSCRLRWINY 60 (396)
Q Consensus 8 lkpkikKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~mg~gRt~kQCReRW~n~ 60 (396)
.+.+-..++||+||++++.+++.+|| ++|..||..|+ +|+..||+.+|...
T Consensus 6 ~~~r~~~~~WT~eE~~~F~~~~~~~g-k~w~~Ia~~l~-~rt~~~~v~~Yy~~ 56 (61)
T 2eqr_A 6 SGDRQFMNVWTDHEKEIFKDKFIQHP-KNFGLIASYLE-RKSVPDCVLYYYLT 56 (61)
T ss_dssp CCCCSCCCSCCHHHHHHHHHHHHHST-TCHHHHHHHCT-TSCHHHHHHHHHHH
T ss_pred ccccccCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHcC-CCCHHHHHHHHHHh
Confidence 44555678999999999999999999 57999999999 99999999998754
No 62
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.60 E-value=1.5e-08 Score=78.21 Aligned_cols=48 Identities=15% Similarity=0.284 Sum_probs=42.9
Q ss_pred CccCCCHHHHHHHHHHHHHhCCCCceecc---cccccccccccchhhhhhccC
Q 016021 13 RKGLWSPEEDEKLYNYITRFGVGCWSSVP---KLAGLQRCGKSCRLRWINYLR 62 (396)
Q Consensus 13 kKg~WT~EEDe~L~~lV~kyG~~nW~~IA---k~mg~gRt~kQCReRW~n~L~ 62 (396)
.+.+||+|||+.|++.|++||. +|..|+ ..+. +|+.-.+++||++...
T Consensus 7 ~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~-~RT~VdLKdk~r~L~k 57 (62)
T 1x58_A 7 GRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQK-GRRAVDLAHKYHRLIS 57 (62)
T ss_dssp CSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCT-TCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCcc-CcccchHHHHHHHHHh
Confidence 6778999999999999999997 799999 4655 8999999999998654
No 63
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.57 E-value=4.9e-08 Score=92.31 Aligned_cols=49 Identities=14% Similarity=0.305 Sum_probs=45.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHHHHHhhh
Q 016021 66 KRGMFSQQEEDLIISLHEVLGNRWAQIASQLPGRTDNEIKNFWNSCLKK 114 (396)
Q Consensus 66 kkg~WT~EED~~Llelv~~~G~kW~~IAk~LpGRT~~qcRnRW~~~Lkk 114 (396)
..++||+||+.++++++.+||++|..||+.|++||..|||++|+..+++
T Consensus 132 ~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 132 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 3568999999999999999999999999999999999999999877654
No 64
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.48 E-value=2.7e-08 Score=78.62 Aligned_cols=50 Identities=16% Similarity=0.282 Sum_probs=43.7
Q ss_pred CCCccCCCHHHHHHHHHHHHHhC---CCCceecccccccccccccchhhhhhccC
Q 016021 11 KLRKGLWSPEEDEKLYNYITRFG---VGCWSSVPKLAGLQRCGKSCRLRWINYLR 62 (396)
Q Consensus 11 kikKg~WT~EEDe~L~~lV~kyG---~~nW~~IAk~mg~gRt~kQCReRW~n~L~ 62 (396)
...++.||.|||++|.+++.+|+ +..|..||+.+| |+..||+.||..+..
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~lg--Rt~~eV~~~y~~L~~ 57 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELG--RSVTDVTTKAKQLKD 57 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHT--SCHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHhC--CCHHHHHHHHHHHHH
Confidence 45678899999999999999998 346999999985 999999999987654
No 65
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.42 E-value=1.3e-07 Score=97.87 Aligned_cols=45 Identities=16% Similarity=0.310 Sum_probs=41.8
Q ss_pred CCCCHHHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHHHHHh
Q 016021 68 GMFSQQEEDLIISLHEVLGNRWAQIASQLPGRTDNEIKNFWNSCL 112 (396)
Q Consensus 68 g~WT~EED~~Llelv~~~G~kW~~IAk~LpGRT~~qcRnRW~~~L 112 (396)
..||.||-.++++++.+||.+|..||+.+++||..|||++|....
T Consensus 381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~k 425 (482)
T 2xag_B 381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYR 425 (482)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 489999999999999999999999999999999999999997433
No 66
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.42 E-value=2.1e-07 Score=73.91 Aligned_cols=48 Identities=13% Similarity=0.230 Sum_probs=43.2
Q ss_pred CCCCCHHHHHHHHHHHHHhC----CchhhhhhcCCCCCHHHHHHHHHHHhhh
Q 016021 67 RGMFSQQEEDLIISLHEVLG----NRWAQIASQLPGRTDNEIKNFWNSCLKK 114 (396)
Q Consensus 67 kg~WT~EED~~Llelv~~~G----~kW~~IAk~LpGRT~~qcRnRW~~~Lkk 114 (396)
...||.+|+++|.+++..|+ .+|.+||..|||||..+|+.||..+++.
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~ 59 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRG 59 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence 45899999999999999998 4699999999999999999999877544
No 67
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.39 E-value=3e-07 Score=69.92 Aligned_cols=47 Identities=19% Similarity=0.365 Sum_probs=42.4
Q ss_pred CCCCCHHHHHHHHHHHHHh--------CCc-hhhhhh-cCCCCCHHHHHHHHHHHhh
Q 016021 67 RGMFSQQEEDLIISLHEVL--------GNR-WAQIAS-QLPGRTDNEIKNFWNSCLK 113 (396)
Q Consensus 67 kg~WT~EED~~Llelv~~~--------G~k-W~~IAk-~LpGRT~~qcRnRW~~~Lk 113 (396)
|.+||+|||..|++.|.++ |++ |..+++ .+|++|-.+||+||...|+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 5689999999999999999 544 999999 7999999999999988764
No 68
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.36 E-value=9.3e-08 Score=72.77 Aligned_cols=48 Identities=21% Similarity=0.390 Sum_probs=43.0
Q ss_pred ccCCCHHHHHHHHHHHHHh--------CCCCceeccc-ccccccccccchhhhhhccC
Q 016021 14 KGLWSPEEDEKLYNYITRF--------GVGCWSSVPK-LAGLQRCGKSCRLRWINYLR 62 (396)
Q Consensus 14 Kg~WT~EEDe~L~~lV~ky--------G~~nW~~IAk-~mg~gRt~kQCReRW~n~L~ 62 (396)
+.+||+|||+.|+++|.+| |..-|+.+++ .++ +++-.+||+||.++|.
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~-~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLT-QHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSS-SCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCC-CCCHHHHHHHHHHHcc
Confidence 5689999999999999999 5456999999 787 9999999999999874
No 69
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.22 E-value=3.2e-07 Score=72.90 Aligned_cols=48 Identities=25% Similarity=0.506 Sum_probs=43.0
Q ss_pred ccCCCHHHHHHHHHHHHHhCC---CCceecccccccccccccchhhhhhccC
Q 016021 14 KGLWSPEEDEKLYNYITRFGV---GCWSSVPKLAGLQRCGKSCRLRWINYLR 62 (396)
Q Consensus 14 Kg~WT~EEDe~L~~lV~kyG~---~nW~~IAk~mg~gRt~kQCReRW~n~L~ 62 (396)
...||++|+++|.+++..|+. ..|..||..|| +|+..+|+.||...+.
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~-gKT~eE~~~hY~~l~~ 58 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG-SRSPEECQRKYMENPR 58 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT-TSCHHHHHHHHHHSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcC-CCCHHHHHHHHHHHHh
Confidence 457999999999999999974 46999999999 9999999999998754
No 70
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.20 E-value=4.8e-07 Score=85.58 Aligned_cols=48 Identities=19% Similarity=0.408 Sum_probs=44.3
Q ss_pred CccCCCHHHHHHHHHHHHHhCCCCceecccccccccccccchhhhhhccC
Q 016021 13 RKGLWSPEEDEKLYNYITRFGVGCWSSVPKLAGLQRCGKSCRLRWINYLR 62 (396)
Q Consensus 13 kKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~mg~gRt~kQCReRW~n~L~ 62 (396)
..++||+||++++++++.+|| ++|..||+.|+ +||..||+.+|.++..
T Consensus 132 ~s~~WTeEE~~lFleAl~kYG-KDW~~IAk~Vg-TKT~~QcKnfY~~~kK 179 (235)
T 2iw5_B 132 CNARWTTEEQLLAVQAIRKYG-RDFQAISDVIG-NKSVVQVKNFFVNYRR 179 (235)
T ss_dssp CCSSCCHHHHHHHHHHHHHHS-SCHHHHHHHHS-SCCHHHHHHHHHHTTT
T ss_pred cCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 467899999999999999999 67999999999 9999999999998764
No 71
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.02 E-value=1.1e-05 Score=61.68 Aligned_cols=50 Identities=14% Similarity=0.237 Sum_probs=45.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCchhhhhh-cCCCCCHHHHHHHHHHH
Q 016021 62 RPDLKRGMFSQQEEDLIISLHEVLGNRWAQIAS-QLPGRTDNEIKNFWNSC 111 (396)
Q Consensus 62 ~P~lkkg~WT~EED~~Llelv~~~G~kW~~IAk-~LpGRT~~qcRnRW~~~ 111 (396)
.|.++...||+||-.+..+++.+||.+|..|++ .|++||..+|...|..-
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~w 54 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYYW 54 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHHH
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhcc
Confidence 366778899999999999999999999999999 58999999999888643
No 72
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=97.98 E-value=1.2e-05 Score=79.01 Aligned_cols=100 Identities=12% Similarity=0.195 Sum_probs=79.6
Q ss_pred CCCHHHHHHHHHHHHHhCCCCceecccccccccccccchh-------hhhhc----------------------------
Q 016021 16 LWSPEEDEKLYNYITRFGVGCWSSVPKLAGLQRCGKSCRL-------RWINY---------------------------- 60 (396)
Q Consensus 16 ~WT~EEDe~L~~lV~kyG~~nW~~IAk~mg~gRt~kQCRe-------RW~n~---------------------------- 60 (396)
.||..+...++.++.+||..+|..||..|+ +++...++. ||..+
T Consensus 112 ~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~-~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l~ 190 (304)
T 1ofc_X 112 AWTKRDFNQFIKANEKYGRDDIDNIAKDVE-GKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKALD 190 (304)
T ss_dssp TCCHHHHHHHHHHHHHHCTTCHHHHTTSST-TCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 599999999999999999999999999998 888876642 22100
Q ss_pred ---------------cCCCCCCCCCCHHHHHHHHHHHHHhCC----chhhhhh------------cCCCCCHHHHHHHHH
Q 016021 61 ---------------LRPDLKRGMFSQQEEDLIISLHEVLGN----RWAQIAS------------QLPGRTDNEIKNFWN 109 (396)
Q Consensus 61 ---------------L~P~lkkg~WT~EED~~Llelv~~~G~----kW~~IAk------------~LpGRT~~qcRnRW~ 109 (396)
..+..+...||++||+.|+-++.+||- .|..|.. ++..||+.+|..|..
T Consensus 191 ~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~ 270 (304)
T 1ofc_X 191 QKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCN 270 (304)
T ss_dssp HHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHH
T ss_pred HHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHH
Confidence 012234558999999999999999994 5999963 346799999999999
Q ss_pred HHhhhhh
Q 016021 110 SCLKKKL 116 (396)
Q Consensus 110 ~~Lkk~l 116 (396)
.+++-..
T Consensus 271 tLi~~ie 277 (304)
T 1ofc_X 271 TLITLIE 277 (304)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9887543
No 73
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.93 E-value=1.6e-05 Score=65.66 Aligned_cols=49 Identities=14% Similarity=0.338 Sum_probs=44.4
Q ss_pred CCCHHHHHHHHHHHHHhCC---chhhhhhcCCCCCHHHHHHHHHHHhhhhhh
Q 016021 69 MFSQQEEDLIISLHEVLGN---RWAQIASQLPGRTDNEIKNFWNSCLKKKLM 117 (396)
Q Consensus 69 ~WT~EED~~Llelv~~~G~---kW~~IAk~LpGRT~~qcRnRW~~~Lkk~lk 117 (396)
.||.|||+.||..+++-|. .|..||+.|.+|+++||++||+.+++-.-+
T Consensus 35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf~~ 86 (95)
T 1ug2_A 35 LWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFHT 86 (95)
T ss_dssp SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred EeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHHHH
Confidence 6999999999999999996 799999999999999999999988765433
No 74
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.89 E-value=2.9e-06 Score=67.51 Aligned_cols=43 Identities=21% Similarity=0.349 Sum_probs=38.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCC----chhhhhhcCCCCCHHHHHHHHH
Q 016021 67 RGMFSQQEEDLIISLHEVLGN----RWAQIASQLPGRTDNEIKNFWN 109 (396)
Q Consensus 67 kg~WT~EED~~Llelv~~~G~----kW~~IAk~LpGRT~~qcRnRW~ 109 (396)
.++||.+|+++|..++..|+. +|.+||+.|||||..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 458999999999999999984 6999999999999999999884
No 75
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=97.87 E-value=2.9e-05 Score=64.30 Aligned_cols=62 Identities=16% Similarity=0.250 Sum_probs=53.2
Q ss_pred hhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCchhhhhhcCC-----CCCHHHHHHHHHHHhhhhhhhCC
Q 016021 55 LRWINYLRPDLKRGMFSQQEEDLIISLHEVLGNRWAQIASQLP-----GRTDNEIKNFWNSCLKKKLMKQG 120 (396)
Q Consensus 55 eRW~n~L~P~lkkg~WT~EED~~Llelv~~~G~kW~~IAk~Lp-----GRT~~qcRnRW~~~Lkk~lkk~~ 120 (396)
+.|..+|. ...||.||...|++|+++|+-+|..|+.... .||-.++|.||..+.++.++...
T Consensus 22 eEY~~~L~----~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r~ 88 (93)
T 4iej_A 22 QEYQLYLH----DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRA 88 (93)
T ss_dssp HHHHHHTC----BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhC----CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhhC
Confidence 45666665 3689999999999999999999999998873 79999999999999988776554
No 76
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=96.95 E-value=3.7e-06 Score=65.98 Aligned_cols=45 Identities=16% Similarity=0.393 Sum_probs=41.6
Q ss_pred CCCHHHHHHHHHHHHHhCC---chhhhhhcCCCCCHHHHHHHHHHHhhh
Q 016021 69 MFSQQEEDLIISLHEVLGN---RWAQIASQLPGRTDNEIKNFWNSCLKK 114 (396)
Q Consensus 69 ~WT~EED~~Llelv~~~G~---kW~~IAk~LpGRT~~qcRnRW~~~Lkk 114 (396)
.||.|||+.|+..+++-|. .|..||+.| +|+++||.+||..+++-
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~L 63 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMKL 63 (70)
Confidence 6999999999999999997 799999999 99999999999887653
No 77
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.63 E-value=9.5e-06 Score=64.52 Aligned_cols=44 Identities=11% Similarity=0.176 Sum_probs=38.7
Q ss_pred ccCCCHHHHHHHHHHHHHhCCC---Cceecccccccccccccchhhhh
Q 016021 14 KGLWSPEEDEKLYNYITRFGVG---CWSSVPKLAGLQRCGKSCRLRWI 58 (396)
Q Consensus 14 Kg~WT~EEDe~L~~lV~kyG~~---nW~~IAk~mg~gRt~kQCReRW~ 58 (396)
.+.||.+|+++|..++..|+.. .|.+||..|| ||+..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~Vp-GKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVK-GRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSC-SSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcC-CCCHHHHHHHHH
Confidence 4579999999999999999743 6999999999 999999999985
No 78
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.52 E-value=4.5e-05 Score=58.37 Aligned_cols=49 Identities=10% Similarity=0.160 Sum_probs=43.5
Q ss_pred cCCCCccCCCHHHHHHHHHHHHHhCCCCceeccc-ccccccccccchhhhhh
Q 016021 9 KQKLRKGLWSPEEDEKLYNYITRFGVGCWSSVPK-LAGLQRCGKSCRLRWIN 59 (396)
Q Consensus 9 kpkikKg~WT~EEDe~L~~lV~kyG~~nW~~IAk-~mg~gRt~kQCReRW~n 59 (396)
.|.+....||+||-++..+++.+|| ++|..|++ .++ +|+..||..-|..
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~-~Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYG-KNFFRIRKELLP-NKETGELITFYYY 53 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTC-SCHHHHHHHSCT-TSCHHHHHHHHHH
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhC-ccHHHHHHHHcC-CCcHHHHHHHHhc
Confidence 5778888999999999999999999 57999998 688 9999999887643
No 79
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.51 E-value=0.00014 Score=59.92 Aligned_cols=46 Identities=22% Similarity=0.176 Sum_probs=42.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHHHHHh
Q 016021 67 RGMFSQQEEDLIISLHEVLGNRWAQIASQLPGRTDNEIKNFWNSCL 112 (396)
Q Consensus 67 kg~WT~EED~~Llelv~~~G~kW~~IAk~LpGRT~~qcRnRW~~~L 112 (396)
...||+||.++..+++..||.+|..||..||+||..+|-..|....
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~~K 88 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLTK 88 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhccc
Confidence 4589999999999999999999999999999999999999886443
No 80
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.45 E-value=0.00025 Score=55.40 Aligned_cols=44 Identities=20% Similarity=0.252 Sum_probs=40.8
Q ss_pred CCCCCHHHHHHHHHHHHHhCCchhhhhh-cCCCCCHHHHHHHHHH
Q 016021 67 RGMFSQQEEDLIISLHEVLGNRWAQIAS-QLPGRTDNEIKNFWNS 110 (396)
Q Consensus 67 kg~WT~EED~~Llelv~~~G~kW~~IAk-~LpGRT~~qcRnRW~~ 110 (396)
...||+||-.+..+++.+||.+|..|++ .||+||..+|...|..
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM 52 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHh
Confidence 4589999999999999999999999999 5999999999998873
No 81
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.41 E-value=2.5e-05 Score=64.61 Aligned_cols=53 Identities=13% Similarity=0.316 Sum_probs=44.2
Q ss_pred CcccccCCCCccCCCHHHHHHHHHHHHHhCCCCceecccccc----cccccccchhhhhhcc
Q 016021 4 HSCCVKQKLRKGLWSPEEDEKLYNYITRFGVGCWSSVPKLAG----LQRCGKSCRLRWINYL 61 (396)
Q Consensus 4 w~~~lkpkikKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~mg----~gRt~kQCReRW~n~L 61 (396)
|..+|++ ..||.||++.|++++++|+.+ |..|+.+.. .+|+.-+.++||..+.
T Consensus 24 Y~~~L~~----~~WTkEETd~Lf~L~~~fdlR-W~vI~DRy~~~~~~~Rt~EdLK~RyY~v~ 80 (93)
T 3hm5_A 24 YQLYLHD----DAWTKAETDHLFDLSRRFDLR-FVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp HHHHTCB----TTBCHHHHHHHHHHHHHTTTC-HHHHHHHSCTTTSCCCCHHHHHHHHHHHH
T ss_pred HHHHcCC----CCCCHHHHHHHHHHHHHhCCC-eeeehhhhccCCCCCCCHHHHHHHHHHHH
Confidence 3444544 789999999999999999976 999999882 2799999999998754
No 82
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.31 E-value=6.5e-05 Score=77.80 Aligned_cols=46 Identities=17% Similarity=0.408 Sum_probs=42.5
Q ss_pred CccCCCHHHHHHHHHHHHHhCCCCceecccccccccccccchhhhhhc
Q 016021 13 RKGLWSPEEDEKLYNYITRFGVGCWSSVPKLAGLQRCGKSCRLRWINY 60 (396)
Q Consensus 13 kKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~mg~gRt~kQCReRW~n~ 60 (396)
...+||.||-+++++++.+|| ++|..||+.++ +|+..||+..|.++
T Consensus 379 ~~~~WT~eE~~~f~~al~~yG-kdw~~IA~~Vg-TKT~~Qvk~fy~~~ 424 (482)
T 2xag_B 379 CNARWTTEEQLLAVQAIRKYG-RDFQAISDVIG-NKSVVQVKNFFVNY 424 (482)
T ss_dssp CCSCCCHHHHHHHHHHHHHHT-TCHHHHHHHHS-SCCHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 367899999999999999999 67999999999 99999999998765
No 83
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.10 E-value=0.0004 Score=55.45 Aligned_cols=50 Identities=22% Similarity=0.385 Sum_probs=41.3
Q ss_pred CCCCCHHHHHHHHHHHHHhC----------CchhhhhhcC----CCCCHHHHHHHHHHHhhhhh
Q 016021 67 RGMFSQQEEDLIISLHEVLG----------NRWAQIASQL----PGRTDNEIKNFWNSCLKKKL 116 (396)
Q Consensus 67 kg~WT~EED~~Llelv~~~G----------~kW~~IAk~L----pGRT~~qcRnRW~~~Lkk~l 116 (396)
...||.+|-..||++..... ..|..||..| -.||+.||+.+|.++.+...
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Yk 67 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEFK 67 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 46899999999999997632 1499999987 36999999999998887643
No 84
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.92 E-value=0.0001 Score=58.86 Aligned_cols=50 Identities=22% Similarity=0.500 Sum_probs=40.2
Q ss_pred CCccCCCHHHHHHHHHHHHHhCC---------CCceeccccc---ccccccccchhhhhhcc
Q 016021 12 LRKGLWSPEEDEKLYNYITRFGV---------GCWSSVPKLA---GLQRCGKSCRLRWINYL 61 (396)
Q Consensus 12 ikKg~WT~EEDe~L~~lV~kyG~---------~nW~~IAk~m---g~gRt~kQCReRW~n~L 61 (396)
-+...||.+|-..|+++...+.. .-|..||..| |..|++.||+.+|.+..
T Consensus 2 kR~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~ 63 (86)
T 2ebi_A 2 KRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL 63 (86)
T ss_dssp CCSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 35678999999999999986421 1499999875 46799999999998754
No 85
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=96.79 E-value=0.00046 Score=56.80 Aligned_cols=43 Identities=14% Similarity=0.344 Sum_probs=39.0
Q ss_pred ccCCCHHHHHHHHHHHHHhCCCCceecccccccccccccchhhhh
Q 016021 14 KGLWSPEEDEKLYNYITRFGVGCWSSVPKLAGLQRCGKSCRLRWI 58 (396)
Q Consensus 14 Kg~WT~EEDe~L~~lV~kyG~~nW~~IAk~mg~gRt~kQCReRW~ 58 (396)
...||+||.++..++...|| ++|..||+.++ +|+..+|.+-|.
T Consensus 43 ~~~WT~eE~~~F~~~~~~~g-K~F~~Ia~~l~-~Kt~~~cV~~YY 85 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHP-KNFGLIASFLE-RKTVAECVLYYY 85 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHST-TCHHHHHHTCT-TCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHcC-CCCHHHHHHHHh
Confidence 45799999999999999999 56999999998 999999988664
No 86
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.76 E-value=0.00052 Score=53.53 Aligned_cols=45 Identities=11% Similarity=0.142 Sum_probs=39.3
Q ss_pred CccCCCHHHHHHHHHHHHHhCCCCceeccc-ccccccccccchhhhhh
Q 016021 13 RKGLWSPEEDEKLYNYITRFGVGCWSSVPK-LAGLQRCGKSCRLRWIN 59 (396)
Q Consensus 13 kKg~WT~EEDe~L~~lV~kyG~~nW~~IAk-~mg~gRt~kQCReRW~n 59 (396)
....||+||-++..+++.+|| .+|..|++ .++ +|+..+|..-|..
T Consensus 7 ~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~-~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 7 GMEEWSASEACLFEEALEKYG-KDFNDIRQDFLP-WKSLTSIIEYYYM 52 (70)
T ss_dssp SSCCCCHHHHHHHHHHHHHTC-SCHHHHHHTTCS-SSCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhC-ccHHHHHHHHcC-CCCHHHHHHHHHh
Confidence 345799999999999999999 57999999 588 9999999887653
No 87
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=96.67 E-value=0.0037 Score=62.95 Aligned_cols=103 Identities=17% Similarity=0.250 Sum_probs=77.2
Q ss_pred CCCHHHHHHHHHHHHHhCCCCceecccccccccccccchh-------hhhh-----------------------------
Q 016021 16 LWSPEEDEKLYNYITRFGVGCWSSVPKLAGLQRCGKSCRL-------RWIN----------------------------- 59 (396)
Q Consensus 16 ~WT~EEDe~L~~lV~kyG~~nW~~IAk~mg~gRt~kQCRe-------RW~n----------------------------- 59 (396)
.||.-+=..++.++.+||..+-..||..|+.+++...++. ||..
T Consensus 125 ~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~L~ 204 (374)
T 2y9y_A 125 NWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEALR 204 (374)
T ss_dssp CSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5999999999999999998889999998853566655441 1110
Q ss_pred -----c------c----CCC-CCCCCCCHHHHHHHHHHHHHhC----Cchhhhhhc------------CCCCCHHHHHHH
Q 016021 60 -----Y------L----RPD-LKRGMFSQQEEDLIISLHEVLG----NRWAQIASQ------------LPGRTDNEIKNF 107 (396)
Q Consensus 60 -----~------L----~P~-lkkg~WT~EED~~Llelv~~~G----~kW~~IAk~------------LpGRT~~qcRnR 107 (396)
+ | .++ .++..||++||..||-++.+|| +.|.+|-.. +..||+..|..|
T Consensus 205 ~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rR 284 (374)
T 2y9y_A 205 RKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARR 284 (374)
T ss_dssp HHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHH
T ss_pred HHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHH
Confidence 0 0 011 1345799999999999999999 469999543 356999999999
Q ss_pred HHHHhhhhhhh
Q 016021 108 WNSCLKKKLMK 118 (396)
Q Consensus 108 W~~~Lkk~lkk 118 (396)
...+++-..+.
T Consensus 285 c~tLi~~IeKE 295 (374)
T 2y9y_A 285 GNTLLQCLEKE 295 (374)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHH
Confidence 99999776543
No 88
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=96.62 E-value=0.0034 Score=57.17 Aligned_cols=46 Identities=9% Similarity=0.153 Sum_probs=36.1
Q ss_pred CCCHHHHHHHHHHHHHhC-CchhhhhhcC--------------CCCCHHHHHHHHHHHhhh
Q 016021 69 MFSQQEEDLIISLHEVLG-NRWAQIASQL--------------PGRTDNEIKNFWNSCLKK 114 (396)
Q Consensus 69 ~WT~EED~~Llelv~~~G-~kW~~IAk~L--------------pGRT~~qcRnRW~~~Lkk 114 (396)
.||++||..|+..+.+|| ++|..|..-. ..+++..+..|-..+|+-
T Consensus 136 ~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~~ 196 (211)
T 4b4c_A 136 DWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIKL 196 (211)
T ss_dssp CCCHHHHHHHHHHHHHHCTTCHHHHHHCSSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCcCcHHHHHhChhcCccccccccccccCCChHHHHHHHHHHHHH
Confidence 599999999999999999 8999996521 124566788887766653
No 89
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.38 E-value=0.0011 Score=54.70 Aligned_cols=47 Identities=17% Similarity=0.329 Sum_probs=41.3
Q ss_pred CccCCCHHHHHHHHHHHHHhCC--CCceecccccccccccccchhhhhhc
Q 016021 13 RKGLWSPEEDEKLYNYITRFGV--GCWSSVPKLAGLQRCGKSCRLRWINY 60 (396)
Q Consensus 13 kKg~WT~EEDe~L~~lV~kyG~--~nW~~IAk~mg~gRt~kQCReRW~n~ 60 (396)
+-..||.|||..|+...++.|. .-|..||+.++ +|++.|+.+|++..
T Consensus 32 ~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~-Nks~nqV~~RFq~L 80 (95)
T 1ug2_A 32 KVVLWTREADRVILTMCQEQGAQPHTFSVISQQLG-NKTPVEVSHRFREL 80 (95)
T ss_dssp CCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHS-SCCHHHHHHHHHHH
T ss_pred EEEEeccccCHHHHHHHHhcCCChhHHHHHHHHHc-cCCHHHHHHHHHHH
Confidence 3446999999999999999986 35999999998 99999999999763
No 90
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=95.35 E-value=0.00058 Score=53.59 Aligned_cols=46 Identities=11% Similarity=0.204 Sum_probs=40.1
Q ss_pred ccCCCHHHHHHHHHHHHHhCCC--Cceecccccccccccccchhhhhhcc
Q 016021 14 KGLWSPEEDEKLYNYITRFGVG--CWSSVPKLAGLQRCGKSCRLRWINYL 61 (396)
Q Consensus 14 Kg~WT~EEDe~L~~lV~kyG~~--nW~~IAk~mg~gRt~kQCReRW~n~L 61 (396)
--.||.|||..|+..+++.|.. -|..||+.++ |++.|+.+||+..+
T Consensus 14 vvlWTReeDR~IL~~cq~~G~s~~tfa~iA~~Ln--ks~~QV~~RF~~Lm 61 (70)
T 2lr8_A 14 IILWTRNDDRVILLECQKRGPSSKTFAYLAAKLD--KNPNQVSERFQQLM 61 (70)
Confidence 3469999999999999999862 5999999885 99999999998754
No 91
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=93.45 E-value=0.16 Score=39.19 Aligned_cols=47 Identities=11% Similarity=0.156 Sum_probs=40.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCc---hhhhhhcC--CCCCHHHHHHHHHHHh
Q 016021 66 KRGMFSQQEEDLIISLHEVLGNR---WAQIASQL--PGRTDNEIKNFWNSCL 112 (396)
Q Consensus 66 kkg~WT~EED~~Llelv~~~G~k---W~~IAk~L--pGRT~~qcRnRW~~~L 112 (396)
.+-.||+|.-+..+++|.++|.. ++.|-+.| +|.|..+|+.+.+.+-
T Consensus 6 ~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR 57 (64)
T 1irz_A 6 PRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFR 57 (64)
T ss_dssp SSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999955 78998886 7899999998876543
No 92
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=93.36 E-value=0.034 Score=45.98 Aligned_cols=48 Identities=15% Similarity=0.361 Sum_probs=40.3
Q ss_pred CccCCCHHHHHHHHHHHHHhCCCCceecccccc----cccccccchhhhhhcc
Q 016021 13 RKGLWSPEEDEKLYNYITRFGVGCWSSVPKLAG----LQRCGKSCRLRWINYL 61 (396)
Q Consensus 13 kKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~mg----~gRt~kQCReRW~n~L 61 (396)
+...||.||.+.|.+++++|.-+ |..|+.+.. ..|+.-+.++||..+.
T Consensus 29 ~~~~WT~eETd~LfdLc~~fdlR-w~vI~DRy~~~~~~~RtvEdLK~RYY~V~ 80 (93)
T 4iej_A 29 HDDAWTKAETDHLFDLSRRFDLR-FVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp CBTTBCHHHHHHHHHHHHHTTTC-HHHHHHHCCTTTSCCCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCC-eEEEeeccccCCCCCCCHHHHHHHHHHHH
Confidence 34679999999999999999966 999998653 2689999999998754
No 93
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=92.26 E-value=0.22 Score=48.88 Aligned_cols=48 Identities=17% Similarity=0.306 Sum_probs=42.4
Q ss_pred CCCCHHHHHHHHHHHHHhCC-chhhhhhcCCCCCHHHHHHHHHHHhhhh
Q 016021 68 GMFSQQEEDLIISLHEVLGN-RWAQIASQLPGRTDNEIKNFWNSCLKKK 115 (396)
Q Consensus 68 g~WT~EED~~Llelv~~~G~-kW~~IAk~LpGRT~~qcRnRW~~~Lkk~ 115 (396)
+.||..+...++.++.+||. .|..||..|+|+|...|+..+.......
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~ry 159 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWERC 159 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHHG
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhH
Confidence 47999999999999999995 7999999999999999987777666543
No 94
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=89.25 E-value=0.41 Score=43.24 Aligned_cols=49 Identities=18% Similarity=0.242 Sum_probs=40.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhC---Cchhhhhhc--CCCCCHHHHHHHHHHHhhh
Q 016021 66 KRGMFSQQEEDLIISLHEVLG---NRWAQIASQ--LPGRTDNEIKNFWNSCLKK 114 (396)
Q Consensus 66 kkg~WT~EED~~Llelv~~~G---~kW~~IAk~--LpGRT~~qcRnRW~~~Lkk 114 (396)
....||+.|-..|++++.+|| .+|..|++. |.+||...|+.-+..++..
T Consensus 6 ~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~ 59 (211)
T 4b4c_A 6 NIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNG 59 (211)
T ss_dssp --CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 456899999999999999999 579999864 7899999999866665544
No 95
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=88.65 E-value=0.23 Score=38.27 Aligned_cols=51 Identities=18% Similarity=0.249 Sum_probs=38.0
Q ss_pred CCCCccCCCHHHHHHHHHHHHHhCCC--Cceecccccc-cccccccchhhhhhc
Q 016021 10 QKLRKGLWSPEEDEKLYNYITRFGVG--CWSSVPKLAG-LQRCGKSCRLRWINY 60 (396)
Q Consensus 10 pkikKg~WT~EEDe~L~~lV~kyG~~--nW~~IAk~mg-~gRt~kQCReRW~n~ 60 (396)
++..+-.||+|..++..++|.+.|.. -++.|.+.|+ .+.|..+++-+.++|
T Consensus 3 ~~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKY 56 (64)
T 1irz_A 3 QKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF 56 (64)
T ss_dssp CCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 34567789999999999999999943 1677877776 256777777655443
No 96
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=87.85 E-value=0.25 Score=47.72 Aligned_cols=28 Identities=36% Similarity=0.808 Sum_probs=25.9
Q ss_pred cCCCHHHHHHHHHHHHHhCCCCceeccc
Q 016021 15 GLWSPEEDEKLYNYITRFGVGCWSSVPK 42 (396)
Q Consensus 15 g~WT~EEDe~L~~lV~kyG~~nW~~IAk 42 (396)
..|+.+||..|+..|.+||.++|..|..
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir~ 196 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIRD 196 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence 4599999999999999999999999954
No 97
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=74.02 E-value=6.1 Score=38.04 Aligned_cols=49 Identities=10% Similarity=0.195 Sum_probs=42.7
Q ss_pred CCCCCHHHHHHHHHHHHHhC---Cchhhhhhc--CCCCCHHHHHHHHHHHhhhh
Q 016021 67 RGMFSQQEEDLIISLHEVLG---NRWAQIASQ--LPGRTDNEIKNFWNSCLKKK 115 (396)
Q Consensus 67 kg~WT~EED~~Llelv~~~G---~kW~~IAk~--LpGRT~~qcRnRW~~~Lkk~ 115 (396)
+++||+.|-+.|++.+.+|| .+|..|+.. |+.|+...++.-+..++..-
T Consensus 3 ~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~~li~~c 56 (270)
T 2xb0_X 3 LGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYDEMMEAA 56 (270)
T ss_dssp TCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHH
Confidence 57899999999999999999 589999755 78999999999888776543
No 98
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=60.40 E-value=11 Score=31.95 Aligned_cols=93 Identities=15% Similarity=0.305 Sum_probs=58.8
Q ss_pred ccCCCHHHH--HHHHHHHHHhCCCCceecccccccccccccchhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhC-----
Q 016021 14 KGLWSPEED--EKLYNYITRFGVGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGMFSQQEEDLIISLHEVLG----- 86 (396)
Q Consensus 14 Kg~WT~EED--e~L~~lV~kyG~~nW~~IAk~mg~gRt~kQCReRW~n~L~P~lkkg~WT~EED~~Llelv~~~G----- 86 (396)
+.+|.+.+. +.|.+..++.|.. -..+.. ++ +|.-. --+|..+|.+.|
T Consensus 7 ~~r~~~~~~Fl~~L~~F~~~rGtp-l~~~P~-i~-gk~lD-----------------------L~~Ly~~V~~~GG~~~V 60 (121)
T 2rq5_A 7 GRRWGPNVQRLACIKKHLRSQGIT-MDELPL-IG-GCELD-----------------------LACFFRLINEMGGMQQV 60 (121)
T ss_dssp SSCCCHHHHHHHHHHHHHHHTTCC-CSSCCE-ET-TEECC-----------------------HHHHHHHHHHTTSHHHH
T ss_pred hHhcCCcHHHHHHHHHHHHHcCCC-CCCCCc-CC-CEecc-----------------------HHHHHHHHHHcCcHHHh
Confidence 446987776 5577777777743 333332 22 22211 124667777777
Q ss_pred ---CchhhhhhcC--CCC---CHHHHHHHHHHHhhhhhhhCCCCcCCcchhHHHHHH
Q 016021 87 ---NRWAQIASQL--PGR---TDNEIKNFWNSCLKKKLMKQGIDPATHKPIADIIEI 135 (396)
Q Consensus 87 ---~kW~~IAk~L--pGR---T~~qcRnRW~~~Lkk~lkk~~~s~eEd~~L~~ive~ 135 (396)
+.|.+||..| |.- ....+|..|..+|-+--. .+++|...+.+-++.
T Consensus 61 t~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~YE~---~~~~e~~~l~~~v~~ 114 (121)
T 2rq5_A 61 TDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSYDS---LSPEEHRRLEKEVLM 114 (121)
T ss_dssp HHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHHHH---CCHHHHHHHHHHHHH
T ss_pred cccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHHHC---cCHHHHhhHHHHHHH
Confidence 4699999998 322 256889999998887654 666777776655554
No 99
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=58.88 E-value=11 Score=26.94 Aligned_cols=44 Identities=16% Similarity=0.198 Sum_probs=33.8
Q ss_pred CCHHHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHHHHHhhhh
Q 016021 70 FSQQEEDLIISLHEVLGNRWAQIASQLPGRTDNEIKNFWNSCLKKK 115 (396)
Q Consensus 70 WT~EED~~Llelv~~~G~kW~~IAk~LpGRT~~qcRnRW~~~Lkk~ 115 (396)
++ +.+..++.+....|-.+.+||+.+ |-+...|+.+....+++-
T Consensus 16 L~-~~~r~il~l~~~~g~s~~eIA~~l-gis~~tv~~~~~ra~~~l 59 (70)
T 2o8x_A 16 LT-TDQREALLLTQLLGLSYADAAAVC-GCPVGTIRSRVARARDAL 59 (70)
T ss_dssp SC-HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHHH
T ss_pred CC-HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 44 455566667667889999999999 889999998877665543
No 100
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=54.25 E-value=14 Score=27.18 Aligned_cols=43 Identities=16% Similarity=0.326 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHH----hCCchhhhhhcCCCCCHHHHHHHHHHHhhhhh
Q 016021 73 QEEDLIISLHEV----LGNRWAQIASQLPGRTDNEIKNFWNSCLKKKL 116 (396)
Q Consensus 73 EED~~Llelv~~----~G~kW~~IAk~LpGRT~~qcRnRW~~~Lkk~l 116 (396)
+.+..++.+.-- .|-.|.+||+.+ |-+...|+.+....+++-.
T Consensus 13 ~~er~il~l~~~l~~~~~~s~~eIA~~l-~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 13 EREAMVLKMRKGLIDGREHTLEEVGAYF-GVTRERIRQIENKALRKLK 59 (73)
T ss_dssp HHHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHH
Confidence 344455555554 578899999999 8999999988776665543
No 101
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=53.03 E-value=19 Score=29.20 Aligned_cols=39 Identities=15% Similarity=0.355 Sum_probs=28.4
Q ss_pred HHHHHHHHhC--------CchhhhhhcCCCCC----HHHHHHHHHHHhhhh
Q 016021 77 LIISLHEVLG--------NRWAQIASQLPGRT----DNEIKNFWNSCLKKK 115 (396)
Q Consensus 77 ~Llelv~~~G--------~kW~~IAk~LpGRT----~~qcRnRW~~~Lkk~ 115 (396)
.|..+|.+.| +.|.+|+..|.--. ..++|..|..+|-+-
T Consensus 48 ~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~y 98 (107)
T 2lm1_A 48 TLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHPF 98 (107)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHH
Confidence 4666777777 46999999983322 568899998888663
No 102
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=52.87 E-value=8.8 Score=31.94 Aligned_cols=39 Identities=15% Similarity=0.330 Sum_probs=30.2
Q ss_pred HHHHHHHHhC--------CchhhhhhcCCCCCHHHHHHHHHHHhhhh
Q 016021 77 LIISLHEVLG--------NRWAQIASQLPGRTDNEIKNFWNSCLKKK 115 (396)
Q Consensus 77 ~Llelv~~~G--------~kW~~IAk~LpGRT~~qcRnRW~~~Lkk~ 115 (396)
.|..+|.+.| +.|..||..|.--....+|..|..+|-+-
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~y 99 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPY 99 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHHSHH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence 4677777777 46999999984434789999999988764
No 103
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=52.66 E-value=3.9 Score=34.82 Aligned_cols=57 Identities=12% Similarity=0.211 Sum_probs=42.1
Q ss_pred HHHHHHHHhCC-------CCceeccccccccccc----ccchhhhhhccCCCCCCCCCCHHHHHHHHHHHH
Q 016021 24 KLYNYITRFGV-------GCWSSVPKLAGLQRCG----KSCRLRWINYLRPDLKRGMFSQQEEDLIISLHE 83 (396)
Q Consensus 24 ~L~~lV~kyG~-------~nW~~IAk~mg~gRt~----kQCReRW~n~L~P~lkkg~WT~EED~~Llelv~ 83 (396)
+|..+|.+.|. +.|..||..|++..+. ...|..|.++|.|=- ..+++|-..|.+-|.
T Consensus 46 ~Ly~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~YE---~~~~~e~~~l~~~v~ 113 (121)
T 2rq5_A 46 CFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSYD---SLSPEEHRRLEKEVL 113 (121)
T ss_dssp HHHHHHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHHH---HCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHHH---CcCHHHHhhHHHHHH
Confidence 67788888872 4699999999854433 356788999887632 378899888887764
No 104
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=51.48 E-value=24 Score=35.56 Aligned_cols=46 Identities=20% Similarity=0.295 Sum_probs=38.8
Q ss_pred CCCCHHHHHHHHHHHHHhCC-chhhhhhcCC-CCCHHHHHHHHHHHhh
Q 016021 68 GMFSQQEEDLIISLHEVLGN-RWAQIASQLP-GRTDNEIKNFWNSCLK 113 (396)
Q Consensus 68 g~WT~EED~~Llelv~~~G~-kW~~IAk~Lp-GRT~~qcRnRW~~~Lk 113 (396)
+.||.-+=..++.++.+||. +-..||..|. |+|...|+.......+
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~ 171 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWS 171 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHH
Confidence 47999999999999999995 5999999997 9999999955444444
No 105
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=50.64 E-value=17 Score=30.19 Aligned_cols=39 Identities=15% Similarity=0.289 Sum_probs=28.7
Q ss_pred HHHHHHHHhC--------CchhhhhhcCCCCC----HHHHHHHHHHHhhhh
Q 016021 77 LIISLHEVLG--------NRWAQIASQLPGRT----DNEIKNFWNSCLKKK 115 (396)
Q Consensus 77 ~Llelv~~~G--------~kW~~IAk~LpGRT----~~qcRnRW~~~Lkk~ 115 (396)
+|..+|.+.| +.|.+|+..|.--. ...+|..|..+|-+-
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~y 94 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYPY 94 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHH
Confidence 4677777777 46999999983221 568899998888663
No 106
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=48.58 E-value=15 Score=26.62 Aligned_cols=42 Identities=14% Similarity=0.199 Sum_probs=30.9
Q ss_pred HHHHHHHHHHH----HhCCchhhhhhcCCCCCHHHHHHHHHHHhhhh
Q 016021 73 QEEDLIISLHE----VLGNRWAQIASQLPGRTDNEIKNFWNSCLKKK 115 (396)
Q Consensus 73 EED~~Llelv~----~~G~kW~~IAk~LpGRT~~qcRnRW~~~Lkk~ 115 (396)
+.+..++.+.. ..|-.+.+||+.+ |-+...|+.+....+++-
T Consensus 8 ~~er~il~l~~~l~~~~g~s~~eIA~~l-gis~~tV~~~~~ra~~kL 53 (68)
T 2p7v_B 8 AREAKVLRMRFGIDMNTDYTLEEVGKQF-DVTRERIRQIEAKALRKL 53 (68)
T ss_dssp HHHHHHHHHHTTTTSSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHccCCCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 34445555544 3478899999999 999999999887776554
No 107
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=47.88 E-value=22 Score=29.84 Aligned_cols=39 Identities=15% Similarity=0.281 Sum_probs=28.2
Q ss_pred HHHHHHHHhC--------CchhhhhhcCCCC----CHHHHHHHHHHHhhhh
Q 016021 77 LIISLHEVLG--------NRWAQIASQLPGR----TDNEIKNFWNSCLKKK 115 (396)
Q Consensus 77 ~Llelv~~~G--------~kW~~IAk~LpGR----T~~qcRnRW~~~Lkk~ 115 (396)
+|..+|.+.| +.|.+|+..|.-- ....+|..|..+|-+-
T Consensus 55 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~y 105 (125)
T 2cxy_A 55 RLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFAF 105 (125)
T ss_dssp HHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHH
Confidence 4667777777 4699999998322 2468888898888663
No 108
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=47.64 E-value=4.3 Score=33.89 Aligned_cols=39 Identities=23% Similarity=0.413 Sum_probs=29.1
Q ss_pred HHHHHHHHhC-------CCCceecccccccccccccchhhhhhccCC
Q 016021 24 KLYNYITRFG-------VGCWSSVPKLAGLQRCGKSCRLRWINYLRP 63 (396)
Q Consensus 24 ~L~~lV~kyG-------~~nW~~IAk~mg~gRt~kQCReRW~n~L~P 63 (396)
+|..+|.+.| .+.|..||..++... +..++..|.++|.|
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~-~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISD-YQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCC-TTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCCh-HHHHHHHHHHHHHH
Confidence 4667777776 245999999998444 77888888888764
No 109
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=47.23 E-value=22 Score=29.82 Aligned_cols=39 Identities=18% Similarity=0.350 Sum_probs=27.3
Q ss_pred HHHHHHHHhC--------CchhhhhhcCCCC--C--HHHHHHHHHHHhhhh
Q 016021 77 LIISLHEVLG--------NRWAQIASQLPGR--T--DNEIKNFWNSCLKKK 115 (396)
Q Consensus 77 ~Llelv~~~G--------~kW~~IAk~LpGR--T--~~qcRnRW~~~Lkk~ 115 (396)
+|..+|.+.| +.|.+|+..|.-. + ...+|..|..+|-+-
T Consensus 46 ~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~y 96 (122)
T 2eqy_A 46 QLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNPY 96 (122)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHH
Confidence 4667777777 4699999998322 1 357888888777653
No 110
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=43.98 E-value=12 Score=31.79 Aligned_cols=39 Identities=15% Similarity=0.307 Sum_probs=29.0
Q ss_pred HHHHHHHhC--------CchhhhhhcCCCCCHHHHHHHHHHHhhhhh
Q 016021 78 IISLHEVLG--------NRWAQIASQLPGRTDNEIKNFWNSCLKKKL 116 (396)
Q Consensus 78 Llelv~~~G--------~kW~~IAk~LpGRT~~qcRnRW~~~Lkk~l 116 (396)
|..+|.+.| +.|.+|+..|.--....+|..|..+|-+--
T Consensus 53 Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~Lr~~Y~k~L~~yE 99 (123)
T 1kkx_A 53 LYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPYE 99 (123)
T ss_dssp HHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHhccccccHHHHHHHHCCChHHHHHHHHHHHHHHHH
Confidence 555555555 359999999843348999999999987753
No 111
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=42.77 E-value=6.5 Score=32.13 Aligned_cols=40 Identities=13% Similarity=0.297 Sum_probs=28.7
Q ss_pred HHHHHHHHhC-------CCCceecccccccccc----cccchhhhhhccCC
Q 016021 24 KLYNYITRFG-------VGCWSSVPKLAGLQRC----GKSCRLRWINYLRP 63 (396)
Q Consensus 24 ~L~~lV~kyG-------~~nW~~IAk~mg~gRt----~kQCReRW~n~L~P 63 (396)
+|..+|.+.| .+.|.+||..||...+ +.+++..|.++|.+
T Consensus 37 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~ 87 (107)
T 1ig6_A 37 TMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILP 87 (107)
T ss_dssp HHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 5667777776 2459999999985432 35678888888875
No 112
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=40.96 E-value=33 Score=28.84 Aligned_cols=39 Identities=18% Similarity=0.289 Sum_probs=30.0
Q ss_pred HHHHHHHHhC--------CchhhhhhcC--CCC---CHHHHHHHHHHHhhhh
Q 016021 77 LIISLHEVLG--------NRWAQIASQL--PGR---TDNEIKNFWNSCLKKK 115 (396)
Q Consensus 77 ~Llelv~~~G--------~kW~~IAk~L--pGR---T~~qcRnRW~~~Lkk~ 115 (396)
+|..+|.+.| +.|.+|+..| +.. ....+|..|..+|-+-
T Consensus 56 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~y 107 (128)
T 1c20_A 56 ELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPY 107 (128)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 5777778887 4699999998 322 2578999999998874
No 113
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=40.77 E-value=9.5 Score=34.43 Aligned_cols=30 Identities=20% Similarity=0.478 Sum_probs=22.0
Q ss_pred CCCCccCCCHHHHHHHH--------HHHHHhCCCCceeccc
Q 016021 10 QKLRKGLWSPEEDEKLY--------NYITRFGVGCWSSVPK 42 (396)
Q Consensus 10 pkikKg~WT~EEDe~L~--------~lV~kyG~~nW~~IAk 42 (396)
|.-..|-||+|+|+.|. +++++|| |..|..
T Consensus 110 P~N~pGIWT~eDDe~L~s~d~~dikrL~kKHG---~erie~ 147 (168)
T 3cz6_A 110 PPNVPGIWTHDDDESLKSNDQEQIRKLVKKHG---TGRMEM 147 (168)
T ss_dssp CTTCTTCCCHHHHHHHHSCCHHHHHHHHHHHC---HHHHHH
T ss_pred CCCCCCCCChhhHHHHHcCCHHHHHHHHHHhC---HHHHHH
Confidence 44568999999999875 5777887 555543
No 114
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=39.54 E-value=36 Score=26.12 Aligned_cols=41 Identities=24% Similarity=0.273 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHHHHHhhh
Q 016021 73 QEEDLIISLHEVLGNRWAQIASQLPGRTDNEIKNFWNSCLKK 114 (396)
Q Consensus 73 EED~~Llelv~~~G~kW~~IAk~LpGRT~~qcRnRW~~~Lkk 114 (396)
+.++.++.+....|-.-.+||+.+ |-+...|+.|....+++
T Consensus 40 ~~~r~vl~l~~~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~ 80 (92)
T 3hug_A 40 AEHRAVIQRSYYRGWSTAQIATDL-GIAEGTVKSRLHYAVRA 80 (92)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 455566667667788999999999 89999999888766554
No 115
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=39.53 E-value=6.3 Score=32.92 Aligned_cols=40 Identities=18% Similarity=0.264 Sum_probs=27.7
Q ss_pred HHHHHHHHhC-------CCCceecccccccccc---cccchhhhhhccCC
Q 016021 24 KLYNYITRFG-------VGCWSSVPKLAGLQRC---GKSCRLRWINYLRP 63 (396)
Q Consensus 24 ~L~~lV~kyG-------~~nW~~IAk~mg~gRt---~kQCReRW~n~L~P 63 (396)
+|..+|.+.| .+.|..||..|+...+ +.+.|..|.++|.|
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~ 93 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYP 93 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 5777787776 2459999999985432 34567777777654
No 116
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=37.09 E-value=16 Score=29.13 Aligned_cols=38 Identities=18% Similarity=0.399 Sum_probs=26.2
Q ss_pred HHHHHHHHhC--------CchhhhhhcCCC---C-CHHHHHHHHHHHhhh
Q 016021 77 LIISLHEVLG--------NRWAQIASQLPG---R-TDNEIKNFWNSCLKK 114 (396)
Q Consensus 77 ~Llelv~~~G--------~kW~~IAk~LpG---R-T~~qcRnRW~~~Lkk 114 (396)
+|..+|.+.| +.|.+|+..|.- - ...++|..|..+|-+
T Consensus 40 ~Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~~ 89 (96)
T 2jxj_A 40 ALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERILYP 89 (96)
T ss_dssp HHHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTTTHH
T ss_pred HHHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHHHHH
Confidence 3666666666 469999999722 1 256788888877755
No 117
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=36.54 E-value=37 Score=29.33 Aligned_cols=39 Identities=18% Similarity=0.322 Sum_probs=29.7
Q ss_pred HHHHHHHHhC--------CchhhhhhcC--CCC---CHHHHHHHHHHHhhhh
Q 016021 77 LIISLHEVLG--------NRWAQIASQL--PGR---TDNEIKNFWNSCLKKK 115 (396)
Q Consensus 77 ~Llelv~~~G--------~kW~~IAk~L--pGR---T~~qcRnRW~~~Lkk~ 115 (396)
+|..+|.+.| +.|.+|+..| +.. ....+|..|..+|-+-
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~y 119 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPY 119 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHH
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHH
Confidence 4667777777 4699999998 332 2578999999999774
No 118
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=34.67 E-value=6.3 Score=33.32 Aligned_cols=40 Identities=28% Similarity=0.487 Sum_probs=28.0
Q ss_pred HHHHHHHHhCC-------CCceecccccccccc----cccchhhhhhccCC
Q 016021 24 KLYNYITRFGV-------GCWSSVPKLAGLQRC----GKSCRLRWINYLRP 63 (396)
Q Consensus 24 ~L~~lV~kyG~-------~nW~~IAk~mg~gRt----~kQCReRW~n~L~P 63 (396)
+|..+|.+.|. +.|..||..|+...+ +.+++..|.++|.|
T Consensus 56 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~ 106 (128)
T 1c20_A 56 ELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYP 106 (128)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 46677777762 459999999985443 34567778887765
No 119
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=33.76 E-value=8.9 Score=32.89 Aligned_cols=44 Identities=14% Similarity=0.137 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHhCCCCceecccccccccccccchhhhhhccCCCC
Q 016021 20 EEDEKLYNYITRFGVGCWSSVPKLAGLQRCGKSCRLRWINYLRPDL 65 (396)
Q Consensus 20 EEDe~L~~lV~kyG~~nW~~IAk~mg~gRt~kQCReRW~n~L~P~l 65 (396)
+-|.+|+.++++.|.-.|.+||+.+| -+...|+.|+.+....++
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~lg--~s~~tv~~rl~~L~~~g~ 46 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKVG--LSTTPCWRRIQKMEEDGV 46 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHHT--CCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHC--cCHHHHHHHHHHHHHCCC
Confidence 56888999999888889999999998 888889998887655544
No 120
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=33.76 E-value=6.7 Score=33.09 Aligned_cols=40 Identities=20% Similarity=0.419 Sum_probs=26.4
Q ss_pred HHHHHHHHhCC-------CCceecccccccccc---cccchhhhhhccCC
Q 016021 24 KLYNYITRFGV-------GCWSSVPKLAGLQRC---GKSCRLRWINYLRP 63 (396)
Q Consensus 24 ~L~~lV~kyG~-------~nW~~IAk~mg~gRt---~kQCReRW~n~L~P 63 (396)
+|..+|.+.|. +.|.+||..++...+ +.++|..|.++|.|
T Consensus 55 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~ 104 (125)
T 2cxy_A 55 RLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFA 104 (125)
T ss_dssp HHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 46667776652 359999999985442 34567777777643
No 121
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=33.16 E-value=30 Score=29.47 Aligned_cols=45 Identities=9% Similarity=0.074 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHhC-CchhhhhhcCCCCCHHHHHHHHHHHhhhhhhh
Q 016021 73 QEEDLIISLHEVLG-NRWAQIASQLPGRTDNEIKNFWNSCLKKKLMK 118 (396)
Q Consensus 73 EED~~Llelv~~~G-~kW~~IAk~LpGRT~~qcRnRW~~~Lkk~lkk 118 (396)
+-|.+|+++..+-| -.|.+||+.+ |-+...|+.|+..+.+..+.+
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~l-g~s~~tv~~rl~~L~~~g~i~ 48 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKV-GLSTTPCWRRIQKMEEDGVIR 48 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHH-TCCHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCee
Confidence 55788888887766 4699999999 999999999999888877654
No 122
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=33.13 E-value=9.4 Score=32.14 Aligned_cols=40 Identities=20% Similarity=0.386 Sum_probs=26.4
Q ss_pred HHHHHHHHhC-------CCCceecccccccccc---cccchhhhhhccCC
Q 016021 24 KLYNYITRFG-------VGCWSSVPKLAGLQRC---GKSCRLRWINYLRP 63 (396)
Q Consensus 24 ~L~~lV~kyG-------~~nW~~IAk~mg~gRt---~kQCReRW~n~L~P 63 (396)
+|..+|.+.| .+.|..|+..|+...+ +...|..|.++|.|
T Consensus 46 ~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~ 95 (122)
T 2eqy_A 46 QLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNP 95 (122)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 4667777776 2459999999985432 23556667776643
No 123
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=32.91 E-value=71 Score=23.18 Aligned_cols=43 Identities=21% Similarity=0.227 Sum_probs=31.3
Q ss_pred CCHHHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHHHHHhhhh
Q 016021 70 FSQQEEDLIISLHEVLGNRWAQIASQLPGRTDNEIKNFWNSCLKKK 115 (396)
Q Consensus 70 WT~EED~~Llelv~~~G~kW~~IAk~LpGRT~~qcRnRW~~~Lkk~ 115 (396)
+|+.|- .++.++ ..|-.-.+||+.+ |-+...|+.+....+++-
T Consensus 17 L~~~e~-~vl~l~-~~g~s~~eIA~~l-~is~~tV~~~~~r~~~kl 59 (79)
T 1x3u_A 17 LSERER-QVLSAV-VAGLPNKSIAYDL-DISPRTVEVHRANVMAKM 59 (79)
T ss_dssp HCHHHH-HHHHHH-TTTCCHHHHHHHT-TSCHHHHHHHHHHHHHHT
T ss_pred CCHHHH-HHHHHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 455554 444555 6688899999999 889999998877665543
No 124
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=32.67 E-value=62 Score=27.12 Aligned_cols=30 Identities=10% Similarity=0.051 Sum_probs=24.7
Q ss_pred hCCchhhhhhcCCCCCHHHHHHHHHHHhhhh
Q 016021 85 LGNRWAQIASQLPGRTDNEIKNFWNSCLKKK 115 (396)
Q Consensus 85 ~G~kW~~IAk~LpGRT~~qcRnRW~~~Lkk~ 115 (396)
.|-...+||+.+ |-+...|+.+....+++-
T Consensus 155 ~g~s~~EIA~~l-gis~~tV~~~l~ra~~~L 184 (194)
T 1or7_A 155 DGLSYEEIAAIM-DCPVGTVRSRIFRAREAI 184 (194)
T ss_dssp TCCCHHHHHHHT-TSCHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 467899999999 899999999887766553
No 125
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=32.45 E-value=48 Score=25.26 Aligned_cols=42 Identities=12% Similarity=0.189 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHH----hCCchhhhhhcCCCCCHHHHHHHHHHHhhhh
Q 016021 73 QEEDLIISLHEV----LGNRWAQIASQLPGRTDNEIKNFWNSCLKKK 115 (396)
Q Consensus 73 EED~~Llelv~~----~G~kW~~IAk~LpGRT~~qcRnRW~~~Lkk~ 115 (396)
+.++.++.+.-- .|-.+.+||..+ |-+...|+.+-...+++-
T Consensus 21 ~~er~vl~l~~~l~~~~~~s~~EIA~~l-gis~~tV~~~~~ra~~kL 66 (87)
T 1tty_A 21 PREAMVLRMRYGLLDGKPKTLEEVGQYF-NVTRERIRQIEVKALRKL 66 (87)
T ss_dssp HHHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 344455555544 567899999999 899999998877666554
No 126
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=32.31 E-value=42 Score=28.05 Aligned_cols=30 Identities=17% Similarity=0.082 Sum_probs=24.7
Q ss_pred hCCchhhhhhcCCCCCHHHHHHHHHHHhhhh
Q 016021 85 LGNRWAQIASQLPGRTDNEIKNFWNSCLKKK 115 (396)
Q Consensus 85 ~G~kW~~IAk~LpGRT~~qcRnRW~~~Lkk~ 115 (396)
.|-...+||+.+ |-+...|+.+....+++-
T Consensus 150 ~g~s~~eIA~~l-gis~~tV~~~l~ra~~~L 179 (184)
T 2q1z_A 150 GDLTHRELAAET-GLPLGTIKSRIRLALDRL 179 (184)
T ss_dssp SCCSSCCSTTTC-CCCCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 467899999999 889999999887776554
No 127
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=30.90 E-value=25 Score=28.55 Aligned_cols=38 Identities=13% Similarity=0.309 Sum_probs=27.3
Q ss_pred HHHHHHHHhC--------CchhhhhhcCC--CC---CHHHHHHHHHHHhhh
Q 016021 77 LIISLHEVLG--------NRWAQIASQLP--GR---TDNEIKNFWNSCLKK 114 (396)
Q Consensus 77 ~Llelv~~~G--------~kW~~IAk~Lp--GR---T~~qcRnRW~~~Lkk 114 (396)
.|..+|.+.| +.|.+||..|. .. ....+|..|..+|-+
T Consensus 37 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~ 87 (107)
T 1ig6_A 37 TMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILP 87 (107)
T ss_dssp HHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 4667777777 46999999972 21 246788889888755
No 128
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=30.36 E-value=2e+02 Score=22.67 Aligned_cols=86 Identities=15% Similarity=0.107 Sum_probs=51.5
Q ss_pred cCCCHHHHHHHHHHHHHhCCCCceecccccccccccccchhhhhhccC-C-----CCCCCCCCHHHHHHHHHHHHHhCCc
Q 016021 15 GLWSPEEDEKLYNYITRFGVGCWSSVPKLAGLQRCGKSCRLRWINYLR-P-----DLKRGMFSQQEEDLIISLHEVLGNR 88 (396)
Q Consensus 15 g~WT~EEDe~L~~lV~kyG~~nW~~IAk~mg~gRt~kQCReRW~n~L~-P-----~lkkg~WT~EED~~Llelv~~~G~k 88 (396)
...|.++-..++.++. -| ..-.+||+.+| .+...++ ||.+... . .-.....+++++..|+++...-+-.
T Consensus 5 ~~~s~~~r~~i~~~~~-~G-~s~~~ia~~lg--is~~Tv~-r~~~~~~~~g~~~~~gr~~~l~~~~~~~i~~~~~~~~~s 79 (141)
T 1u78_A 5 SALSDTERAQLDVMKL-LN-VSLHEMSRKIS--RSRHCIR-VYLKDPVSYGTSKRAPRRKALSVRDERNVIRAASNSCKT 79 (141)
T ss_dssp CCCCHHHHHHHHHHHH-TT-CCHHHHHHHHT--CCHHHHH-HHHHSGGGTTCCCCCCCCCSSCHHHHHHHHHHHHHCCCC
T ss_pred ccCCHHHHHHHHHHHH-cC-CCHHHHHHHHC--cCHHHHH-HHHHcccccCCcCCCCCCCcCCHHHHHHHHHHHhCCCCC
Confidence 3478888888877774 45 34788999987 5444443 3332211 1 1122358888888888873332234
Q ss_pred hhhhhhcCCC--CCHHHHHH
Q 016021 89 WAQIASQLPG--RTDNEIKN 106 (396)
Q Consensus 89 W~~IAk~LpG--RT~~qcRn 106 (396)
=.+|+..+ | -+...|..
T Consensus 80 ~~~i~~~l-g~~~s~~tV~r 98 (141)
T 1u78_A 80 ARDIRNEL-QLSASKRTILN 98 (141)
T ss_dssp HHHHHHHT-TCCSCHHHHHH
T ss_pred HHHHHHHH-CCCccHHHHHH
Confidence 56788877 4 46666654
No 129
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=29.95 E-value=16 Score=31.65 Aligned_cols=56 Identities=29% Similarity=0.426 Sum_probs=34.7
Q ss_pred HHHHHHHHhCC-------CCceecccccccccc----cccchhhhhhccCC--CCCCCCCCHHHHHHHH
Q 016021 24 KLYNYITRFGV-------GCWSSVPKLAGLQRC----GKSCRLRWINYLRP--DLKRGMFSQQEEDLII 79 (396)
Q Consensus 24 ~L~~lV~kyG~-------~nW~~IAk~mg~gRt----~kQCReRW~n~L~P--~lkkg~WT~EED~~Ll 79 (396)
+|..+|.+.|. +.|.+||..|++..+ +.+++..|.++|.| ...+|.=.++|-+.-+
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~yE~~~~g~~~p~~~~~~~ 136 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECEKRGLSNPNELQAAI 136 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 45666666652 459999999985332 35678888888876 2234444445444333
No 130
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=29.25 E-value=85 Score=24.41 Aligned_cols=46 Identities=17% Similarity=0.185 Sum_probs=35.3
Q ss_pred CCCCCHHHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHHHHHhhhh
Q 016021 67 RGMFSQQEEDLIISLHEVLGNRWAQIASQLPGRTDNEIKNFWNSCLKKK 115 (396)
Q Consensus 67 kg~WT~EED~~Llelv~~~G~kW~~IAk~LpGRT~~qcRnRW~~~Lkk~ 115 (396)
....|+.|-+.|.-++ .|..-.+||+.| |-+...|+.+...++++-
T Consensus 27 ~~~Lt~rE~~Vl~l~~--~G~s~~eIA~~L-~iS~~TV~~~~~~i~~Kl 72 (90)
T 3ulq_B 27 QDVLTPRECLILQEVE--KGFTNQEIADAL-HLSKRSIEYSLTSIFNKL 72 (90)
T ss_dssp --CCCHHHHHHHHHHH--TTCCHHHHHHHH-TCCHHHHHHHHHHHHHHT
T ss_pred ccCCCHHHHHHHHHHH--cCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 4468887777665544 788999999999 889999998887776553
No 131
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=27.89 E-value=78 Score=24.57 Aligned_cols=44 Identities=25% Similarity=0.218 Sum_probs=33.8
Q ss_pred CCCHHHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHHHHHhhhh
Q 016021 69 MFSQQEEDLIISLHEVLGNRWAQIASQLPGRTDNEIKNFWNSCLKKK 115 (396)
Q Consensus 69 ~WT~EED~~Llelv~~~G~kW~~IAk~LpGRT~~qcRnRW~~~Lkk~ 115 (396)
..|+.|-+.|.. + ..|-.-.+||+.+ |-+...|+.+....+++-
T Consensus 27 ~Lt~~e~~vl~l-~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~kL 70 (95)
T 3c57_A 27 GLTDQERTLLGL-L-SEGLTNKQIADRM-FLAEKTVKNYVSRLLAKL 70 (95)
T ss_dssp CCCHHHHHHHHH-H-HTTCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 467666655554 5 7788899999999 889999998877666554
No 132
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=27.41 E-value=77 Score=22.51 Aligned_cols=45 Identities=18% Similarity=0.282 Sum_probs=33.7
Q ss_pred CCCCHHHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHHHHHhhhh
Q 016021 68 GMFSQQEEDLIISLHEVLGNRWAQIASQLPGRTDNEIKNFWNSCLKKK 115 (396)
Q Consensus 68 g~WT~EED~~Llelv~~~G~kW~~IAk~LpGRT~~qcRnRW~~~Lkk~ 115 (396)
..+|+.|-+.|.. + ..|..-.+||+.+ |-+...|+.+...++++-
T Consensus 10 ~~L~~~e~~il~~-~-~~g~s~~eIA~~l-~is~~tV~~~~~~~~~kl 54 (74)
T 1fse_A 10 PLLTKREREVFEL-L-VQDKTTKEIASEL-FISEKTVRNHISNAMQKL 54 (74)
T ss_dssp CCCCHHHHHHHHH-H-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHH-H-HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 3577776665554 4 6678899999999 889999998877665543
No 133
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=27.04 E-value=74 Score=25.80 Aligned_cols=34 Identities=29% Similarity=0.476 Sum_probs=27.5
Q ss_pred CHHHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHH
Q 016021 71 SQQEEDLIISLHEVLGNRWAQIASQLPGRTDNEIK 105 (396)
Q Consensus 71 T~EED~~Llelv~~~G~kW~~IAk~LpGRT~~qcR 105 (396)
++.-+..|..+....|..|..+|+.| |=+..+|.
T Consensus 14 ~~~~~~~~~~ia~~lg~~Wk~LAr~L-g~s~~~I~ 47 (111)
T 2yqf_A 14 TEQAEMKMAVISEHLGLSWAELAREL-QFSVEDIN 47 (111)
T ss_dssp SHHHHHHHHHHHHHHTTTHHHHHHHT-TCCHHHHH
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHc-CCCHHHHH
Confidence 66677788888899999999999999 66665553
No 134
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=26.33 E-value=78 Score=23.88 Aligned_cols=44 Identities=25% Similarity=0.255 Sum_probs=33.0
Q ss_pred CCCHHHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHHHHHhhhh
Q 016021 69 MFSQQEEDLIISLHEVLGNRWAQIASQLPGRTDNEIKNFWNSCLKKK 115 (396)
Q Consensus 69 ~WT~EED~~Llelv~~~G~kW~~IAk~LpGRT~~qcRnRW~~~Lkk~ 115 (396)
..|+.|-+.|.. + ..|-.-.+||+.+ |-+...|+.+...++++-
T Consensus 21 ~Lt~~e~~vl~l-~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~kL 64 (82)
T 1je8_A 21 QLTPRERDILKL-I-AQGLPNKMIARRL-DITESTVKVHVKHMLKKM 64 (82)
T ss_dssp GSCHHHHHHHHH-H-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 467666655544 4 6788899999999 889999998877665543
No 135
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=25.77 E-value=1.9e+02 Score=23.87 Aligned_cols=66 Identities=6% Similarity=0.001 Sum_probs=41.6
Q ss_pred cCCCHHHHHHHHHHHHHhCCCCceecccccccccccccchhhhhhc------cCCCCC----CCCCCHHHHHHHHHHHHH
Q 016021 15 GLWSPEEDEKLYNYITRFGVGCWSSVPKLAGLQRCGKSCRLRWINY------LRPDLK----RGMFSQQEEDLIISLHEV 84 (396)
Q Consensus 15 g~WT~EEDe~L~~lV~kyG~~nW~~IAk~mg~gRt~kQCReRW~n~------L~P~lk----kg~WT~EED~~Llelv~~ 84 (396)
.+.|.++-..++.++. .| ....+||+.++ .+...+ .||.+. +.+... ....++++.+.|++++.+
T Consensus 24 ~~~s~e~r~~ii~l~~-~G-~s~~~IA~~lg--is~~TV-~rwl~r~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~~ 98 (159)
T 2k27_A 24 RPLPEVVRQRIVDLAH-QG-VRPCDISRQLR--VSHGCV-SKILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQ 98 (159)
T ss_dssp CSSCHHHHHHHHHHHH-HT-CCHHHHHHHHT--CCSHHH-HHHHCCSSTTSCCCCCCCCCCCCCCCCTTHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH-cC-CCHHHHHHHHC--cCHHHH-HHHHHHHHhcCCccCCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 3688998888888884 46 34788999987 444433 344432 222211 234787777888887765
Q ss_pred h
Q 016021 85 L 85 (396)
Q Consensus 85 ~ 85 (396)
.
T Consensus 99 ~ 99 (159)
T 2k27_A 99 N 99 (159)
T ss_dssp C
T ss_pred C
Confidence 3
No 136
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=25.18 E-value=81 Score=27.12 Aligned_cols=40 Identities=18% Similarity=0.169 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHHHHHhhh
Q 016021 74 EEDLIISLHEVLGNRWAQIASQLPGRTDNEIKNFWNSCLKK 114 (396)
Q Consensus 74 ED~~Llelv~~~G~kW~~IAk~LpGRT~~qcRnRW~~~Lkk 114 (396)
.++.++.+....|-...+||+.+ |-+...|+.+....+++
T Consensus 191 ~~r~vl~l~~~~g~s~~EIA~~l-gis~~~V~~~~~ra~~~ 230 (239)
T 1rp3_A 191 REKLVIQLIFYEELPAKEVAKIL-ETSVSRVSQLKAKALER 230 (239)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 33344444444577899999999 89999998887766554
No 137
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=24.66 E-value=96 Score=25.10 Aligned_cols=41 Identities=7% Similarity=0.039 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHHHHHhhh
Q 016021 73 QEEDLIISLHEVLGNRWAQIASQLPGRTDNEIKNFWNSCLKK 114 (396)
Q Consensus 73 EED~~Llelv~~~G~kW~~IAk~LpGRT~~qcRnRW~~~Lkk 114 (396)
+.+..++.++...|-...+||+.+ |-+...|+.+....+++
T Consensus 28 ~~~r~vl~l~~~~g~s~~EIA~~l-giS~~tV~~~l~ra~~k 68 (113)
T 1xsv_A 28 NKQRNYLELFYLEDYSLSEIADTF-NVSRQAVYDNIRRTGDL 68 (113)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHT-TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 345566667667789999999999 88999999887766544
No 138
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=24.30 E-value=71 Score=25.63 Aligned_cols=30 Identities=27% Similarity=0.330 Sum_probs=24.0
Q ss_pred HhCCchhhhhhcCCCCCHHHHHHHHHHHhhh
Q 016021 84 VLGNRWAQIASQLPGRTDNEIKNFWNSCLKK 114 (396)
Q Consensus 84 ~~G~kW~~IAk~LpGRT~~qcRnRW~~~Lkk 114 (396)
..|-...+||+.+ |-+...|+.+....+++
T Consensus 122 ~~g~s~~EIA~~l-gis~~tV~~~~~ra~~~ 151 (164)
T 3mzy_A 122 IRGYSYREIATIL-SKNLKSIDNTIQRIRKK 151 (164)
T ss_dssp TTTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 3467799999999 88999999888766554
No 139
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=24.17 E-value=1e+02 Score=21.16 Aligned_cols=39 Identities=15% Similarity=0.137 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHHHHHhhhh
Q 016021 75 EDLIISLHEVLGNRWAQIASQLPGRTDNEIKNFWNSCLKKK 115 (396)
Q Consensus 75 D~~Llelv~~~G~kW~~IAk~LpGRT~~qcRnRW~~~Lkk~ 115 (396)
+..++.+ -..|-.-.+||+.+ |-+...|+.+...++++-
T Consensus 3 e~~vl~l-~~~g~s~~eIA~~l-~is~~tV~~~~~~~~~kl 41 (61)
T 2jpc_A 3 ERQVLKL-IDEGYTNHGISEKL-HISIKTVETHRMNMMRKL 41 (61)
T ss_dssp HHHHHHH-HHTSCCSHHHHHHT-CSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHcCCCHHHHHHHh-CCCHHHHHHHHHHHHHHH
Confidence 4455566 35688889999999 889999998877666553
No 140
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=22.63 E-value=1.2e+02 Score=26.07 Aligned_cols=45 Identities=16% Similarity=0.193 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHhC-CchhhhhhcCCCCCHHHHHHHHHHHhhhhhhh
Q 016021 73 QEEDLIISLHEVLG-NRWAQIASQLPGRTDNEIKNFWNSCLKKKLMK 118 (396)
Q Consensus 73 EED~~Llelv~~~G-~kW~~IAk~LpGRT~~qcRnRW~~~Lkk~lkk 118 (396)
+-|.+|+.+..+.| ..+.+||+.+ |-+...|+.|...+.+..+.+
T Consensus 27 ~~d~~IL~~L~~~~~~s~~eLA~~l-glS~~tv~~rl~~L~~~G~I~ 72 (171)
T 2e1c_A 27 EIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESGVIK 72 (171)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHH-TSCHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCeE
Confidence 55667777777766 4699999999 889999999999888776654
No 141
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=22.45 E-value=2.1e+02 Score=23.24 Aligned_cols=66 Identities=5% Similarity=0.001 Sum_probs=42.2
Q ss_pred cCCCHHHHHHHHHHHHHhCCCCceecccccccccccccchhhhhhc------cCCCCC----CCCCCHHHHHHHHHHHHH
Q 016021 15 GLWSPEEDEKLYNYITRFGVGCWSSVPKLAGLQRCGKSCRLRWINY------LRPDLK----RGMFSQQEEDLIISLHEV 84 (396)
Q Consensus 15 g~WT~EEDe~L~~lV~kyG~~nW~~IAk~mg~gRt~kQCReRW~n~------L~P~lk----kg~WT~EED~~Llelv~~ 84 (396)
...|.++-..++.++. .| ....+||+.++ .+...+ .||.+. +.+... ....++++.+.|++++.+
T Consensus 31 ~~~s~e~r~~iv~~~~-~G-~s~~~iA~~lg--is~~TV-~rw~~~~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~~ 105 (149)
T 1k78_A 31 RPLPDVVRQRIVELAH-QG-VRPCDISRQLR--VSHGCV-SKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQ 105 (149)
T ss_dssp SCCCHHHHHHHHHHHH-TT-CCHHHHHHHHT--CCHHHH-HHHHHHHHHHSCCCCCCCCCCCCSSSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH-cC-CCHHHHHHHHC--cCHHHH-HHHHHHHHHcCCCCccCCCCCCCCCCCHHHHHHHHHHHHh
Confidence 4689999888888874 45 34788999987 444333 334322 222222 234788888888888766
Q ss_pred h
Q 016021 85 L 85 (396)
Q Consensus 85 ~ 85 (396)
.
T Consensus 106 ~ 106 (149)
T 1k78_A 106 N 106 (149)
T ss_dssp C
T ss_pred C
Confidence 4
No 142
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=22.08 E-value=34 Score=29.63 Aligned_cols=36 Identities=14% Similarity=0.265 Sum_probs=27.6
Q ss_pred eecccccccccccccchhhhhhccCCCCCCCCCCHHHHHHHHHH
Q 016021 38 SSVPKLAGLQRCGKSCRLRWINYLRPDLKRGMFSQQEEDLIISL 81 (396)
Q Consensus 38 ~~IAk~mg~gRt~kQCReRW~n~L~P~lkkg~WT~EED~~Llel 81 (396)
..||..+. |+++.+||..+. + ...+|+||++.|.+-
T Consensus 119 ~~vA~~ik-gkt~eeir~~f~------I-~nd~t~eEe~~ir~e 154 (160)
T 2p1m_A 119 QTVADMIK-GKTPEEIRTTFN------I-KNDFTPEEEEEVRRE 154 (160)
T ss_dssp HHHHHTTT-TCCHHHHHHHTT------C-CCCCCHHHHHHHHHH
T ss_pred HHHHHHHc-CCCHHHHHHHcC------C-CCCCCHHHHHHHHHh
Confidence 56788887 899999998752 2 336999999887643
No 143
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=21.98 E-value=1.3e+02 Score=24.79 Aligned_cols=45 Identities=11% Similarity=0.144 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHhC-CchhhhhhcCCCCCHHHHHHHHHHHhhhhhhh
Q 016021 73 QEEDLIISLHEVLG-NRWAQIASQLPGRTDNEIKNFWNSCLKKKLMK 118 (396)
Q Consensus 73 EED~~Llelv~~~G-~kW~~IAk~LpGRT~~qcRnRW~~~Lkk~lkk 118 (396)
+-|..|+.+..+.| -.+.+||+.+ |-+...|+.|...+.+..+.+
T Consensus 9 ~~d~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~i~ 54 (151)
T 2dbb_A 9 RVDMQLVKILSENSRLTYRELADIL-NTTRQRIARRIDKLKKLGIIR 54 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHT-TSCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCEE
Confidence 44667777777766 4799999999 889999999999888776543
No 144
>2of5_H Leucine-rich repeat and death domain-containing protein; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=21.00 E-value=79 Score=26.08 Aligned_cols=29 Identities=28% Similarity=0.526 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhCCchhhhhhcCCCCCHHHH
Q 016021 75 EDLIISLHEVLGNRWAQIASQLPGRTDNEI 104 (396)
Q Consensus 75 D~~Llelv~~~G~kW~~IAk~LpGRT~~qc 104 (396)
|..|..+....|..|..+|+.+ |=+..+|
T Consensus 13 ~~~l~~ia~~lg~dWk~LAr~L-g~s~~~I 41 (118)
T 2of5_H 13 QSNLLSVAGRLGLDWPAVALHL-GVSYREV 41 (118)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHT-TCCHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHc-CCCHHHH
Confidence 4567777789999999999999 6556554
No 145
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=20.93 E-value=51 Score=29.69 Aligned_cols=27 Identities=7% Similarity=0.261 Sum_probs=18.5
Q ss_pred chhhhhhccC-CCCCCCCCCHHHHHHHH
Q 016021 53 CRLRWINYLR-PDLKRGMFSQQEEDLII 79 (396)
Q Consensus 53 CReRW~n~L~-P~lkkg~WT~EED~~Ll 79 (396)
..+.|..-.. |...+|-||.|+|+.|.
T Consensus 99 VL~~l~~GkgiP~N~pGIWT~eDDe~L~ 126 (168)
T 3cz6_A 99 FLNMFKDNVNPPPNVPGIWTHDDDESLK 126 (168)
T ss_dssp HHHHHHHTCSSCTTCTTCCCHHHHHHHH
T ss_pred HHHHHHhCCCCCCCCCCCCChhhHHHHH
Confidence 3344444333 55678999999999886
No 146
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=20.91 E-value=89 Score=25.92 Aligned_cols=34 Identities=26% Similarity=0.448 Sum_probs=23.8
Q ss_pred CCCCCHHHHHHHHHHHHHhCCchhhhhhcCCCCCHHHH
Q 016021 67 RGMFSQQEEDLIISLHEVLGNRWAQIASQLPGRTDNEI 104 (396)
Q Consensus 67 kg~WT~EED~~Llelv~~~G~kW~~IAk~LpGRT~~qc 104 (396)
...=|.+ .|..++...|..|+.+|+.+ |=+..+|
T Consensus 19 ~~~~t~~---~l~~Ia~~LG~~Wk~LAR~L-Glse~dI 52 (115)
T 2o71_A 19 NSSPSDR---QINQLAQRLGPEWEPMVLSL-GLSQTDI 52 (115)
T ss_dssp GSCCCHH---HHHHHHHHCCTTHHHHHHHT-TCCHHHH
T ss_pred cCCCCHH---HHHHHHHHHhhhHHHHHHHc-CCCHHHH
Confidence 3344544 45556788999999999998 6555554
No 147
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=20.79 E-value=85 Score=26.00 Aligned_cols=39 Identities=23% Similarity=0.396 Sum_probs=25.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCchhhhhhcCCCCCHHHH
Q 016021 62 RPDLKRGMFSQQEEDLIISLHEVLGNRWAQIASQLPGRTDNEI 104 (396)
Q Consensus 62 ~P~lkkg~WT~EED~~Llelv~~~G~kW~~IAk~LpGRT~~qc 104 (396)
.+.+-...=|.+ .|..++...|..|+.+|+.+ |=+..+|
T Consensus 14 ~~~~~~~~~t~~---~l~~Ia~~lG~~Wk~LAR~L-Glse~dI 52 (114)
T 2of5_A 14 PSHILNSSPSDR---QINQLAQRLGPEWEPMVLSL-GLSQTDI 52 (114)
T ss_dssp --CCTTSCCCHH---HHHHHHHTCCSTHHHHHHTT-TCCHHHH
T ss_pred CchhhcCCCCHH---HHHHHHHHHhhhHHHHHHHc-CCCHHHH
Confidence 334444455555 45556788999999999998 6555554
No 148
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=20.69 E-value=2e+02 Score=22.77 Aligned_cols=46 Identities=22% Similarity=0.202 Sum_probs=35.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHHHHHhhhh
Q 016021 67 RGMFSQQEEDLIISLHEVLGNRWAQIASQLPGRTDNEIKNFWNSCLKKK 115 (396)
Q Consensus 67 kg~WT~EED~~Llelv~~~G~kW~~IAk~LpGRT~~qcRnRW~~~Lkk~ 115 (396)
....|+.|-+.|.. + ..|-.-.+||+.| |-+...|+.+...++++-
T Consensus 32 ~~~Lt~re~~Vl~l-~-~~G~s~~EIA~~L-~iS~~TV~~~l~ri~~KL 77 (99)
T 1p4w_A 32 DKRLSPKESEVLRL-F-AEGFLVTEIAKKL-NRSIKTISSQKKSAMMKL 77 (99)
T ss_dssp SSSCCHHHHHHHHH-H-HHTCCHHHHHHHH-TSCHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 45688888876654 3 3688899999999 889999998877666554
No 149
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=20.54 E-value=32 Score=29.89 Aligned_cols=45 Identities=16% Similarity=0.194 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHhCCCCceecccccccccccccchhhhhhccCCCC
Q 016021 19 PEEDEKLYNYITRFGVGCWSSVPKLAGLQRCGKSCRLRWINYLRPDL 65 (396)
Q Consensus 19 ~EEDe~L~~lV~kyG~~nW~~IAk~mg~gRt~kQCReRW~n~L~P~l 65 (396)
.+-|.+|+.++++.|...+.+||+.+| -+...|+.|..+....++
T Consensus 26 d~~d~~IL~~L~~~~~~s~~eLA~~lg--lS~~tv~~rl~~L~~~G~ 70 (171)
T 2e1c_A 26 DEIDKKIIKILQNDGKAPLREISKITG--LAESTIHERIRKLRESGV 70 (171)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHHHHT--SCHHHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHC--cCHHHHHHHHHHHHHCCC
Confidence 356778888888888788999999998 788889888877655544
No 150
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=20.27 E-value=1.7e+02 Score=18.31 Aligned_cols=37 Identities=14% Similarity=0.305 Sum_probs=27.4
Q ss_pred CCCHHHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHH
Q 016021 69 MFSQQEEDLIISLHEVLGNRWAQIASQLPGRTDNEIKNF 107 (396)
Q Consensus 69 ~WT~EED~~Llelv~~~G~kW~~IAk~LpGRT~~qcRnR 107 (396)
..++++-..++.++ .-|-...+||+.+ |-+...|+.+
T Consensus 5 ~l~~~~~~~i~~~~-~~g~s~~~IA~~l-gis~~Tv~~~ 41 (51)
T 1tc3_C 5 ALSDTERAQLDVMK-LLNVSLHEMSRKI-SRSRHCIRVY 41 (51)
T ss_dssp CCCHHHHHHHHHHH-HTTCCHHHHHHHH-TCCHHHHHHH
T ss_pred CCCHHHHHHHHHHH-HcCCCHHHHHHHH-CcCHHHHHHH
Confidence 46677776777665 4577899999998 7787777654
Done!