Query 016022
Match_columns 396
No_of_seqs 135 out of 194
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 06:33:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016022.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016022hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ch0_A Inner nuclear membrane 99.9 4.3E-23 1.5E-27 178.1 5.7 95 256-351 8-104 (133)
2 1b9w_A Protein (merozoite surf 93.8 0.024 8.2E-07 45.7 2.0 32 95-126 11-47 (95)
3 1ob1_C Major merozoite surface 91.3 0.086 2.9E-06 43.0 2.1 31 95-125 11-46 (99)
4 1n1i_A Merozoite surface prote 90.3 0.13 4.3E-06 42.4 2.3 30 95-124 17-51 (105)
5 2ktc_A Potassium channel toxin 63.2 0.93 3.2E-05 29.3 -1.0 21 92-112 4-31 (34)
6 1g1t_A E-selectin; EGF, adhesi 50.9 3.8 0.00013 34.4 0.5 28 94-123 125-156 (157)
7 1acw_A Natural scorpion peptid 50.5 1.9 6.4E-05 27.0 -1.1 20 92-111 2-28 (29)
8 1jlz_A Tityustoxin alpha-KTX; 41.6 8.9 0.0003 23.6 0.9 21 92-112 4-25 (26)
9 2k2s_B Micronemal protein 6; m 40.7 7.2 0.00025 28.6 0.5 26 95-121 18-49 (61)
10 1g1s_A P-selectin; selectin, l 39.6 7.5 0.00026 32.8 0.5 29 94-124 125-157 (162)
11 1edm_B Factor IX; epidermal gr 38.3 14 0.00049 23.7 1.7 25 95-121 10-38 (39)
12 2kl7_A Fibulin-4; secreted, ca 36.9 13 0.00046 27.7 1.5 14 108-121 56-70 (71)
13 2bou_A EGF-like module contain 36.0 16 0.00055 30.2 2.1 27 95-121 8-42 (143)
14 3cfw_A L-selectin; EGF, cell a 35.8 16 0.00053 30.8 2.0 30 94-125 125-158 (164)
15 1emn_A Fibrillin; extracellula 35.5 16 0.00054 27.6 1.7 26 95-121 13-42 (82)
16 1gl4_A Nidogen-1, entactin; im 34.1 18 0.00061 34.7 2.2 33 91-123 6-46 (285)
17 1a3p_A Epidermal growth factor 33.0 26 0.0009 23.3 2.4 27 95-123 10-42 (45)
18 2ch0_A Inner nuclear membrane 30.6 44 0.0015 28.4 3.9 58 129-195 16-75 (133)
19 4aqb_A Mannan-binding lectin s 29.0 26 0.00088 33.6 2.5 32 94-125 285-335 (361)
20 3mp7_B Preprotein translocase 29.0 74 0.0025 23.3 4.4 20 39-58 24-43 (61)
21 2zjs_E Preprotein translocase 28.1 57 0.0019 23.5 3.6 31 36-66 18-48 (60)
22 1wz5_A Potassium channel block 26.7 28 0.00094 22.8 1.5 21 92-112 9-35 (35)
23 1q2f_A PNC27; P53 protein, MDM 24.1 11 0.00038 24.3 -0.8 12 178-189 3-14 (32)
24 1pvz_A K+ toxin-like peptide; 22.8 28 0.00095 22.2 0.9 18 92-109 12-30 (31)
25 1ccv_A AMCI, chymotrypsin inhi 22.1 30 0.001 24.4 1.1 23 101-124 31-54 (56)
No 1
>2ch0_A Inner nuclear membrane protein MAN1; winged helix motif, DNA, nuclear protein; NMR {Homo sapiens}
Probab=99.87 E-value=4.3e-23 Score=178.11 Aligned_cols=95 Identities=16% Similarity=0.413 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCcccccccccccCCCCCc-cchhhHHHHHHHHhcCCC-cceeee
Q 016022 256 HRRRYFAIRVEELYHQVCEILEENALMSKSVNGECEPWVVASRLRDHLLLPKER-KDPVIWKKVEELVQEDSR-VDQYPK 333 (396)
Q Consensus 256 ~r~~~e~~~v~~Lv~~vl~~L~~q~~~~~~~~~~~~pyl~~~qLRD~LL~~~~r-~r~~LW~kV~k~Ve~nSn-Irt~~~ 333 (396)
++.+.++++|.+||++|+++|++|+..| .++++.+|||++.||||.||.++.+ ++.+||++|+++||+|+| ||++++
T Consensus 8 ~k~~ee~~~v~~LV~~Iid~L~~q~~~~-~e~~~~~p~l~i~hLRD~ll~~~~r~k~~~lW~kAvk~lE~NesRVRte~~ 86 (133)
T 2ch0_A 8 TKEEEETRQMYDMVVKIIDVLRSHNEAC-QENKDLQPYMPIPHVRDSLIQPHDRKKMKKVWDRAVDFLAANESRVRTETR 86 (133)
T ss_dssp STHHHHHTTTTTTHHHHHHHHHHHHHHH-TTSSCSCSCBCHHHHHHTTCCSTTGGGGHHHHHHHHHHHTTTCCCSEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCCCCCCceehhhhHhhhcCccchHHHHHHHHHHHHHHHcccchhhhcce
Confidence 3456777889999999999999998876 4445678999999999999988765 559999999999998755 999999
Q ss_pred EEcCceeeeeEEeecCCC
Q 016022 334 LLKGESKVVWEWQVEGSL 351 (396)
Q Consensus 334 ei~GE~~~vWEWig~~~~ 351 (396)
+++||+|+||||||+.+.
T Consensus 87 ~i~GE~~rvW~Wig~~~~ 104 (133)
T 2ch0_A 87 RIGGADFLVWRWIQPSAS 104 (133)
T ss_dssp EETTEEEEEEECCCCSSS
T ss_pred eecCeEEEEEEecCCCCc
Confidence 999999999999998654
No 2
>1b9w_A Protein (merozoite surface protein 1); MSP-1, candidate malaria vaccine, surface antigen; 1.80A {Plasmodium cynomolgi} SCOP: g.3.11.4 g.3.11.4 PDB: 2npr_A
Probab=93.79 E-value=0.024 Score=45.68 Aligned_cols=32 Identities=19% Similarity=0.504 Sum_probs=28.1
Q ss_pred cCCCCceecCC----ee-eeCCCceecCCCcccChhh
Q 016022 95 PCPSNGECHQG----KL-ECFHGYRKHGKLCVEDGDI 126 (396)
Q Consensus 95 PCPehAiC~~g----~l-~C~~gYvl~~~~CV~D~~k 126 (396)
.||+||.||.. +. +|-.||+..+.+||+|+..
T Consensus 11 kcp~NA~Cyr~~dg~EecRCllnykk~~~kCV~~~~~ 47 (95)
T 1b9w_A 11 NVPENAACYRYLDGTEEWRCLLYFKEDAGKCVPAPNM 47 (95)
T ss_dssp CCCTTEEEEECTTSCEEEEECTTEEEETTEEEECTTC
T ss_pred CCCCCcCeEEEcCCCEEEEEECCeEecCCEEEcCCCC
Confidence 79999999973 44 9999999999999999854
No 3
>1ob1_C Major merozoite surface protein; immune system, immunoglobulin/complex, immunoglobulin, antib fragment, MSP1-19, EGF-like domain; 2.90A {Plasmodium falciparum} SCOP: g.3.11.4 g.3.11.4 PDB: 1cej_A 2flg_A
Probab=91.26 E-value=0.086 Score=43.02 Aligned_cols=31 Identities=32% Similarity=0.912 Sum_probs=27.3
Q ss_pred cCCCCceecC---C-ee-eeCCCceecCCCcccChh
Q 016022 95 PCPSNGECHQ---G-KL-ECFHGYRKHGKLCVEDGD 125 (396)
Q Consensus 95 PCPehAiC~~---g-~l-~C~~gYvl~~~~CV~D~~ 125 (396)
-||+||.|+. | +. .|.+||...+..|+++..
T Consensus 11 ~C~~NA~C~r~~~g~e~C~C~~gy~gdg~~Cv~~~~ 46 (99)
T 1ob1_C 11 QCPQNSGCFRHLDEREECKCLLNYKQEGDKCVENPN 46 (99)
T ss_dssp CCCTTEEEECCTTSCCEEEECTTEEEETTEEEECSC
T ss_pred CCCCCCCeEEcCCCCEEEEecCCeecCCCeEeeCCC
Confidence 6999999998 5 44 999999999999999863
No 4
>1n1i_A Merozoite surface protein-1; MSP1, malaria, surface antigen, glycoprotein, EGF domain, cell adhesion; HET: HIS; 2.40A {Plasmodium knowlesi strain H} SCOP: g.3.11.4 g.3.11.4
Probab=90.32 E-value=0.13 Score=42.42 Aligned_cols=30 Identities=30% Similarity=0.783 Sum_probs=26.6
Q ss_pred cCCCCceecC---C-ee-eeCCCceecCCCcccCh
Q 016022 95 PCPSNGECHQ---G-KL-ECFHGYRKHGKLCVEDG 124 (396)
Q Consensus 95 PCPehAiC~~---g-~l-~C~~gYvl~~~~CV~D~ 124 (396)
-||+||.|+. | +. .|..||...+..|+++.
T Consensus 17 ~Cp~NA~C~r~~~G~e~CrCl~gY~~dg~~Cv~~N 51 (105)
T 1n1i_A 17 NVPENAACYRYLDGTEEWRCLLGFKEVGGKCVPAS 51 (105)
T ss_dssp CCCTTEEEEECTTSCEEEEECTTEEECSSSEEECC
T ss_pred CCCCCCCeEECCCCCEeEEEECCeeccCCEEEECC
Confidence 6999999987 4 45 99999999999999994
No 5
>2ktc_A Potassium channel toxin alpha-KTX 9.4; BTK-2, scorpion toxin, KV1.1, disulfide bond, ionic channel inhibitor, neurotoxin; NMR {Mesobuthus tamulus}
Probab=63.22 E-value=0.93 Score=29.29 Aligned_cols=21 Identities=29% Similarity=0.813 Sum_probs=16.2
Q ss_pred CCccCCCC-------ceecCCeeeeCCC
Q 016022 92 SCEPCPSN-------GECHQGKLECFHG 112 (396)
Q Consensus 92 ~C~PCPeh-------AiC~~g~l~C~~g 112 (396)
.|+.||+| +.|.++.-.|++|
T Consensus 4 gCEeCP~HCk~k~A~~tCdn~~C~Cn~~ 31 (34)
T 2ktc_A 4 GCAECPMHCKGKMAKPTCENEVCKCNIG 31 (34)
T ss_dssp HHHHHHHTCCTTCCCEEEETTEEEECTT
T ss_pred ccccChhhhccccccccccCCeEecccC
Confidence 58888887 5677777778776
No 6
>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A
Probab=50.87 E-value=3.8 Score=34.37 Aligned_cols=28 Identities=29% Similarity=0.755 Sum_probs=22.3
Q ss_pred ccCCCCceecCC--ee--eeCCCceecCCCcccC
Q 016022 94 EPCPSNGECHQG--KL--ECFHGYRKHGKLCVED 123 (396)
Q Consensus 94 ~PCPehAiC~~g--~l--~C~~gYvl~~~~CV~D 123 (396)
.||+.+|.|.++ .. .|.+||. ++.|..|
T Consensus 125 ~pc~~~g~C~~~~~~~~c~C~~g~~--g~~Ce~~ 156 (157)
T 1g1t_A 125 TSCSGHGECVETINNYTCKCDPGFS--GLKCEQI 156 (157)
T ss_dssp TGGGGSEEEEEETTEEEEEECTTEE--STTSCEE
T ss_pred CCCCCCCEeecCCCCeeEECCCCcc--Ccccccc
Confidence 489999999988 33 8999987 7777643
No 7
>1acw_A Natural scorpion peptide P01; scorpion toxin, potassium channel, neurotoxin, toxin; NMR {Androctonus mauretanicus mauretanicus} SCOP: g.3.7.2 PDB: 1wm7_A
Probab=50.52 E-value=1.9 Score=26.98 Aligned_cols=20 Identities=40% Similarity=0.963 Sum_probs=13.3
Q ss_pred CCccCCCC-------ceecCCeeeeCC
Q 016022 92 SCEPCPSN-------GECHQGKLECFH 111 (396)
Q Consensus 92 ~C~PCPeh-------AiC~~g~l~C~~ 111 (396)
.|+.||+| +.|.++.-.|++
T Consensus 2 ~CedcP~HC~~k~a~~~C~n~~C~C~~ 28 (29)
T 1acw_A 2 SCEDCPEHCSTQKAQAKCDNDKCVCEP 28 (29)
T ss_dssp CSSHHHHHHHTTTCEEEEETTEEEEEC
T ss_pred ccccchhhhhcccccccccCCeeecCC
Confidence 58889987 456666555543
No 8
>1jlz_A Tityustoxin alpha-KTX; scorpion venom, K+-channel blocker, structure; NMR {Synthetic} SCOP: g.3.7.2
Probab=41.61 E-value=8.9 Score=23.62 Aligned_cols=21 Identities=33% Similarity=1.070 Sum_probs=16.1
Q ss_pred CCc-cCCCCceecCCeeeeCCC
Q 016022 92 SCE-PCPSNGECHQGKLECFHG 112 (396)
Q Consensus 92 ~C~-PCPehAiC~~g~l~C~~g 112 (396)
+|. ||-.+|.|.+|+-.|.+.
T Consensus 4 ~C~~~C~~~gKCmNgkC~Cy~~ 25 (26)
T 1jlz_A 4 SCRKKCKGSGKCINGRCKCYXX 25 (26)
T ss_dssp SHHHHTTSSEEEETTEEEEC--
T ss_pred hhhhhhCCCCEEeCCCceeecC
Confidence 455 889999999999888653
No 9
>2k2s_B Micronemal protein 6; microneme protein complex, cell adhesion, cytoplasmic vesicl lectin, virulence, EGF-like domain, membrane; NMR {Toxoplasma gondii} PDB: 2k2t_A
Probab=40.67 E-value=7.2 Score=28.58 Aligned_cols=26 Identities=31% Similarity=0.701 Sum_probs=18.4
Q ss_pred cCCCC--ceecCC--e--eeeCCCceecCCCcc
Q 016022 95 PCPSN--GECHQG--K--LECFHGYRKHGKLCV 121 (396)
Q Consensus 95 PCPeh--AiC~~g--~--l~C~~gYvl~~~~CV 121 (396)
||..+ |.|.+. . -.|.+||.. +..|.
T Consensus 18 PC~nga~gtC~~~~g~y~C~C~~Gy~~-G~~C~ 49 (61)
T 2k2s_B 18 PCGPEAAGTCKETNSGYICRCNQGYRI-SLDGT 49 (61)
T ss_dssp SSCSSSCCEEEECSSEEEEECCTTEEE-EECSS
T ss_pred CCcCCCccccccCCCceEeECCCCCcc-CCCCC
Confidence 78887 799875 2 389999973 33453
No 10
>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system, membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A* 1fsb_A
Probab=39.62 E-value=7.5 Score=32.80 Aligned_cols=29 Identities=28% Similarity=0.737 Sum_probs=22.6
Q ss_pred ccCCCCceecCC--ee--eeCCCceecCCCcccCh
Q 016022 94 EPCPSNGECHQG--KL--ECFHGYRKHGKLCVEDG 124 (396)
Q Consensus 94 ~PCPehAiC~~g--~l--~C~~gYvl~~~~CV~D~ 124 (396)
.||..+|.|.++ .. .|.+||. +..|..+.
T Consensus 125 ~~C~~~g~C~~~~~~~~c~C~~g~~--G~~Ce~~~ 157 (162)
T 1g1s_A 125 MSCSKQGECLETIGNYTCSCYPGFY--GPECEYVR 157 (162)
T ss_dssp TGGGGSEEEEECSSSEEEEECTTEE--STTSCEEC
T ss_pred CCCCCCCEEecCCCCceEeCCCCCc--CcccccCc
Confidence 378889999988 33 8999998 56787654
No 11
>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A
Probab=38.34 E-value=14 Score=23.67 Aligned_cols=25 Identities=36% Similarity=0.931 Sum_probs=18.7
Q ss_pred cCCCCceecCC--ee--eeCCCceecCCCcc
Q 016022 95 PCPSNGECHQG--KL--ECFHGYRKHGKLCV 121 (396)
Q Consensus 95 PCPehAiC~~g--~l--~C~~gYvl~~~~CV 121 (396)
||..+|.|.+. .. .|.+||. +..|.
T Consensus 10 pC~ngg~C~~~~~~~~C~C~~G~~--G~~Ce 38 (39)
T 1edm_B 10 PCLNGGSCKDDINSYECWCPFGFE--GKNCE 38 (39)
T ss_dssp CCCTTCEEEEETTEEEEECCTTCC--STTSC
T ss_pred CCCCCCEeEcCCCceEeECCCCCc--CCccC
Confidence 89999999864 33 8899985 55553
No 12
>2kl7_A Fibulin-4; secreted, calcium, disease mutation, disulfide bond, EGF- like domain, glycoprotein, polymorphism, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=36.95 E-value=13 Score=27.70 Aligned_cols=14 Identities=36% Similarity=0.835 Sum_probs=10.8
Q ss_pred eeCCCceecCC-Ccc
Q 016022 108 ECFHGYRKHGK-LCV 121 (396)
Q Consensus 108 ~C~~gYvl~~~-~CV 121 (396)
.|.+||.+.+. .|+
T Consensus 56 ~C~~Gy~~~~~~~C~ 70 (71)
T 2kl7_A 56 PCPPGYEPDDQDSCV 70 (71)
T ss_dssp CSCTTEEEECCCCSC
T ss_pred CCCCCeeeCCCCccc
Confidence 58899988754 786
No 13
>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A
Probab=35.97 E-value=16 Score=30.23 Aligned_cols=27 Identities=22% Similarity=0.619 Sum_probs=22.5
Q ss_pred cCCCCceecCC-eeeeCCCceec-------CCCcc
Q 016022 95 PCPSNGECHQG-KLECFHGYRKH-------GKLCV 121 (396)
Q Consensus 95 PCPehAiC~~g-~l~C~~gYvl~-------~~~CV 121 (396)
||+.||.|.+. .=.|.+||... +..|+
T Consensus 8 ~C~~~~~C~~~~~C~C~~G~~g~~~~~~~~~~~C~ 42 (143)
T 2bou_A 8 WCPQDSSCVNATACRCNPGFSSFSEIITTPMETCD 42 (143)
T ss_dssp TCCTTEEESSSSCEEECTTEECSSSSBCSTTCCCE
T ss_pred cCCCCCEEcCCCEEeCCCCCcCccccccCCCCcCC
Confidence 89999999998 55999999864 46775
No 14
>3cfw_A L-selectin; EGF, cell adhesion, EGF-like domain, glycoprotein, membrane, sushi, transmembrane; HET: NAG MAN BMA; 2.20A {Homo sapiens}
Probab=35.85 E-value=16 Score=30.82 Aligned_cols=30 Identities=30% Similarity=0.526 Sum_probs=22.4
Q ss_pred ccCCCCceecCC----eeeeCCCceecCCCcccChh
Q 016022 94 EPCPSNGECHQG----KLECFHGYRKHGKLCVEDGD 125 (396)
Q Consensus 94 ~PCPehAiC~~g----~l~C~~gYvl~~~~CV~D~~ 125 (396)
.+|+.+|.|.++ .-.|.+||. +..|..+.+
T Consensus 125 ~~C~~~g~C~~~~~~~~c~C~~g~~--g~~C~~~~~ 158 (164)
T 3cfw_A 125 WSCSGHGECVEIINNYTCNCDVGYY--GPQCQFVQV 158 (164)
T ss_dssp TSSCSSEEEEEETTEEEEEECTTCB--SSSSCBC--
T ss_pred CcCCCCCeecccCCCceeeeCCCcc--ccccccccc
Confidence 589999999943 449999987 567876654
No 15
>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A
Probab=35.51 E-value=16 Score=27.62 Aligned_cols=26 Identities=38% Similarity=0.878 Sum_probs=20.7
Q ss_pred cCCCCceecCC----eeeeCCCceecCCCcc
Q 016022 95 PCPSNGECHQG----KLECFHGYRKHGKLCV 121 (396)
Q Consensus 95 PCPehAiC~~g----~l~C~~gYvl~~~~CV 121 (396)
||. ||.|.+. .=.|.+||.+.+..|+
T Consensus 13 ~C~-~g~C~n~~g~y~C~C~~Gy~~~g~~C~ 42 (82)
T 1emn_A 13 VCK-HGQCINTDGSYRCECPFGYILAGNECV 42 (82)
T ss_dssp SCS-SSEECCCSSCCCEECCTTEEEETTEEE
T ss_pred CcC-CCEEEecCCCEEEECCCCeECCCCccC
Confidence 675 7999875 2389999998888885
No 16
>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2 g.3.11.5 PDB: 1h4u_A
Probab=34.12 E-value=18 Score=34.67 Aligned_cols=33 Identities=27% Similarity=0.800 Sum_probs=26.3
Q ss_pred CCCc----cCCCCceecCC----eeeeCCCceecCCCcccC
Q 016022 91 DSCE----PCPSNGECHQG----KLECFHGYRKHGKLCVED 123 (396)
Q Consensus 91 p~C~----PCPehAiC~~g----~l~C~~gYvl~~~~CV~D 123 (396)
+.|. +|-.||.|.+. .-.|.+||.--+..|...
T Consensus 6 DEC~~~~~~C~~~a~C~Nt~Gsy~C~C~~Gy~GnG~~C~d~ 46 (285)
T 1gl4_A 6 QTCANNRHQCSVHAECRDYATGFCCRCVANYTGNGRQCVAE 46 (285)
T ss_dssp -CHHHHGGGSCTTEEEEECSSCEEEEECTTEEECSSSEEET
T ss_pred hhccCCCCCCCCCCEeEcCCCCeEEEcCCCCCCCCCcCCCC
Confidence 4564 89999999854 449999999888999763
No 17
>1a3p_A Epidermal growth factor; disulfide connectivities, EGF-like domain, repeat; HET: ABA; NMR {Mus musculus} SCOP: g.3.11.1
Probab=33.01 E-value=26 Score=23.32 Aligned_cols=27 Identities=26% Similarity=0.618 Sum_probs=20.1
Q ss_pred cCCCCceec--C--C--eeeeCCCceecCCCcccC
Q 016022 95 PCPSNGECH--Q--G--KLECFHGYRKHGKLCVED 123 (396)
Q Consensus 95 PCPehAiC~--~--g--~l~C~~gYvl~~~~CV~D 123 (396)
||-.+|.|. + + .=.|.+||. +..|..|
T Consensus 10 pC~ngg~C~~~~~~~~~~C~C~~G~~--G~~Ce~~ 42 (45)
T 1a3p_A 10 YCLNGGVXMHIESLDSYTCNCVIGYS--GDRCQTR 42 (45)
T ss_dssp CCSSSCEEEECTTTSSEEEECCTTEE--TTTTCEE
T ss_pred CCCCCCEEEeecCCCCEEEEcCCCCc--CCcCCcc
Confidence 788889997 2 2 339999995 7788654
No 18
>2ch0_A Inner nuclear membrane protein MAN1; winged helix motif, DNA, nuclear protein; NMR {Homo sapiens}
Probab=30.60 E-value=44 Score=28.36 Aligned_cols=58 Identities=9% Similarity=0.050 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHhhcccccCCC--CcccchhhHHHHhhhhhhhhccCCChHHHHHHHHHHHHHHH
Q 016022 129 TAGRLSRWVENRLCRAYAQFLCDGTG--SIWVEENDIWNDLEGHELMKIFELDNPVYLYTKKRTMETVG 195 (396)
Q Consensus 129 ~i~~l~~~i~~~Lr~~~a~~~CG~~~--s~~i~e~dL~~~~~e~~~~k~~~l~~~~fe~l~~~al~~l~ 195 (396)
.+..|++.+++.|+.+.+. |.+.+ ..++....|.|.|-.. .+......+|++|+.-+.
T Consensus 16 ~v~~LV~~Iid~L~~q~~~--~~e~~~~~p~l~i~hLRD~ll~~-------~~r~k~~~lW~kAvk~lE 75 (133)
T 2ch0_A 16 QMYDMVVKIIDVLRSHNEA--CQENKDLQPYMPIPHVRDSLIQP-------HDRKKMKKVWDRAVDFLA 75 (133)
T ss_dssp TTTTTHHHHHHHHHHHHHH--HTTSSCSCSCBCHHHHHHTTCCS-------TTGGGGHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHH--hccCCCCCCceehhhhHhhhcCc-------cchHHHHHHHHHHHHHHH
Confidence 5678888999999988864 54443 3688999998887641 222335689999996554
No 19
>4aqb_A Mannan-binding lectin serine protease 1; blood clotting, mannan-binding protein, complement, ficolins complement pathway, mannose- binding lectin; HET: NAG BMA MAN; 4.20A {Homo sapiens}
Probab=29.02 E-value=26 Score=33.58 Aligned_cols=32 Identities=25% Similarity=0.537 Sum_probs=22.6
Q ss_pred ccCCCCceecCC----------eeeeCCCceecCC---------CcccChh
Q 016022 94 EPCPSNGECHQG----------KLECFHGYRKHGK---------LCVEDGD 125 (396)
Q Consensus 94 ~PCPehAiC~~g----------~l~C~~gYvl~~~---------~CV~D~~ 125 (396)
.++|.||.|.+. .+.|++||.+.++ .|..|+.
T Consensus 285 ~~~p~~G~~~~~~~~~~~g~~v~~~C~~GY~l~g~~~~~~~~~~~C~~~g~ 335 (361)
T 4aqb_A 285 LQPPVHGKIEPSQAKYFFKDQVLVSCDTGYKVLKDNVEMDTFQIECLKDGT 335 (361)
T ss_dssp CCCCTTEEEESCCSSEETTCEEEEEECTTEEEEETTEEESEEEEEBCTTSC
T ss_pred CCCCCCCEEecCCCCcccCCEEEEEeCCCeEEeCCCcccccCeeEECCCCe
Confidence 357889998632 2589999999754 4777654
No 20
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=29.00 E-value=74 Score=23.28 Aligned_cols=20 Identities=10% Similarity=0.124 Sum_probs=15.3
Q ss_pred CCChhhHHHHHHHHHHHHHH
Q 016022 39 FPSKQDLLRLITVVAIASSV 58 (396)
Q Consensus 39 ~~~~~~~~~~~~v~~ia~~~ 58 (396)
-|+++||.+...+.++..++
T Consensus 24 KPd~~Ef~~iak~~~iG~~i 43 (61)
T 3mp7_B 24 KPNWATYKRAAKITGLGIIL 43 (61)
T ss_dssp CCCTTHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHH
Confidence 39999999988776665554
No 21
>2zjs_E Preprotein translocase SECE subunit; translocon, SEC, protein-conducting-channel, membrane, prote transport, translocation, transmembrane, transport; 3.20A {Thermus thermophilus} PDB: 2zqp_E
Probab=28.08 E-value=57 Score=23.47 Aligned_cols=31 Identities=6% Similarity=0.135 Sum_probs=22.2
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 016022 36 QSLFPSKQDLLRLITVVAIASSVALTCNYLA 66 (396)
Q Consensus 36 ~~~~~~~~~~~~~~~v~~ia~~~a~~c~~l~ 66 (396)
---.|+++|..+.-.+.++++++..+..++.
T Consensus 18 KV~WPtr~e~~~~t~vViv~v~i~~~~~~~v 48 (60)
T 2zjs_E 18 RVTWPTREQVVEGTQAILLFTLAFMVILGLY 48 (60)
T ss_dssp CCCCSCSSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457999999998887777776655554443
No 22
>1wz5_A Potassium channel blocking toxin 1; ionic channel inhibitor; HET: ABA; NMR {Pandinus imperator}
Probab=26.73 E-value=28 Score=22.84 Aligned_cols=21 Identities=29% Similarity=0.934 Sum_probs=17.4
Q ss_pred CCc-cC-----CCCceecCCeeeeCCC
Q 016022 92 SCE-PC-----PSNGECHQGKLECFHG 112 (396)
Q Consensus 92 ~C~-PC-----PehAiC~~g~l~C~~g 112 (396)
+|. || ..+|.|.+|+=.|.++
T Consensus 9 ~C~~~Ck~~~g~~~gKCmNgkC~Cy~~ 35 (35)
T 1wz5_A 9 DCGRPCQQQTGXPNSKCINRMCKCYGX 35 (35)
T ss_dssp TTHHHHHHHSCSSCCEEETTEEECSCC
T ss_pred HHHHHHHHHHCCCCcceeCCcceecCC
Confidence 576 77 9999999999888653
No 23
>1q2f_A PNC27; P53 protein, MDM-2 binding domain, penetratin, antitumor, antitumor protein; NMR {Synthetic} SCOP: j.69.1.1 PDB: 1q2i_A
Probab=24.10 E-value=11 Score=24.27 Aligned_cols=12 Identities=17% Similarity=0.033 Sum_probs=10.8
Q ss_pred CChHHHHHHHHH
Q 016022 178 LDNPVYLYTKKR 189 (396)
Q Consensus 178 l~~~~fe~l~~~ 189 (396)
++.++|.+||.+
T Consensus 3 lsqq~FadLW~~ 14 (32)
T 1q2f_A 3 LSQETFSDLWKL 14 (32)
T ss_dssp CSSTTTTTHHHH
T ss_pred ccHHHHHHHHHH
Confidence 678899999999
No 24
>1pvz_A K+ toxin-like peptide; alpha/beta scaffold; NMR {Mesobuthus martensii} SCOP: g.3.7.2
Probab=22.80 E-value=28 Score=22.21 Aligned_cols=18 Identities=39% Similarity=1.089 Sum_probs=15.1
Q ss_pred CCc-cCCCCceecCCeeee
Q 016022 92 SCE-PCPSNGECHQGKLEC 109 (396)
Q Consensus 92 ~C~-PCPehAiC~~g~l~C 109 (396)
+|. ||..+|.|.+|+=.|
T Consensus 12 ~C~~~C~~~gKC~NgkC~C 30 (31)
T 1pvz_A 12 DCSRKCPGNPPCRNGFCAC 30 (31)
T ss_dssp HHHHHSSSCCCEETTEESC
T ss_pred HHHhhhccCCcccCCCcee
Confidence 466 899999999998666
No 25
>1ccv_A AMCI, chymotrypsin inhibitor; protein inhibitor, hemolymph, canonical inhibitor, hydrolase inhibitor; NMR {Apis mellifera} SCOP: g.22.1.1
Probab=22.12 E-value=30 Score=24.39 Aligned_cols=23 Identities=30% Similarity=0.816 Sum_probs=18.0
Q ss_pred eecCCeeeeCCCceecC-CCcccCh
Q 016022 101 ECHQGKLECFHGYRKHG-KLCVEDG 124 (396)
Q Consensus 101 iC~~g~l~C~~gYvl~~-~~CV~D~ 124 (396)
.|.+| =.|.+||++.. ..||+-.
T Consensus 31 ~C~~G-C~C~~G~v~~~~g~CV~~~ 54 (56)
T 1ccv_A 31 QCRIG-CQCQEGFLRNGEGACVLPE 54 (56)
T ss_dssp SCEEE-EEECTTCEEETTTEEECGG
T ss_pred cCCCC-CcCCCCeeECCCCcccChh
Confidence 56655 68999999987 6999754
Done!