BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016023
(396 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1U2E|A Chain A, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|B Chain B, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|C Chain C, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|D Chain D, Crystal Structure Of The C-C Bond Hydrolase Mhpc
Length = 289
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 59 RLHAVKAQTLVLSGGKDQLLPSQEEGQRLTSALPKSQLRSFEDHGHF 105
RL +KAQTL++ G D+ +P + G RL S + S+L F D GH+
Sbjct: 224 RLAEIKAQTLIVWGRNDRFVP-MDAGLRLLSGIAGSELHIFRDCGHW 269
>pdb|1NHJ|A Chain A, Crystal Structure Of N-Terminal 40kd MutlA100P MUTANT
PROTEIN COMPLEX With Adpnp And One Sodium
Length = 333
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 55/126 (43%), Gaps = 15/126 (11%)
Query: 66 QTLVLSGGKDQLLPSQEEGQRLTSALPKSQLRSFEDHGHFLFLEDGVDLVTIIKGASYYR 125
+ ++ G + + LPS RLT R+ E + +G D+ +K A++
Sbjct: 89 EAIISLGFRGEALPSISSVSRLTLTS-----RTAEQQEAWQAYAEGRDMNVTVKPAAHPV 143
Query: 126 RGKSLDYIS---------DFMPPTATEFNELNEENRWMSVLMSPVMLSTLEDGKIVRGLS 176
G +L+ + F+ TEFN ++E R +++ V ++ +GKIVR
Sbjct: 144 -GTTLEVLDLFYNTPARRKFLRTEKTEFNHIDEIIRRIALARFDVTINLSHNGKIVRQYR 202
Query: 177 GIPSEG 182
+P G
Sbjct: 203 AVPEGG 208
>pdb|2XMZ|A Chain A, Structure Of Menh From S. Aureus
Length = 269
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 59 RLHAVKAQTLVLSGGKDQLLPSQEEGQRLTSALPKSQLRSFEDHGHFLFLEDGVDLVTII 118
RL +K TL+L+G D+ + +++ + +P S+ + GH + +ED + T+I
Sbjct: 202 RLKEIKVPTLILAGEYDEKFV--QIAKKMANLIPNSKCKLISATGHTIHVEDSDEFDTMI 259
Query: 119 KG 120
G
Sbjct: 260 LG 261
>pdb|1B63|A Chain A, Mutl Complexed With Adpnp
pdb|1NHH|A Chain A, Crystal Structure Of N-Terminal 40kd Mutl Protein (Ln40)
Complex With Adpnp And One Rubidium
pdb|1NHI|A Chain A, Crystal Structure Of N-Terminal 40kd Mutl (Ln40) Complex
With Adpnp And One Potassium
Length = 333
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 136 FMPPTATEFNELNEENRWMSVLMSPVMLSTLEDGKIVRGLSGIPSEG 182
F+ TEFN ++E R +++ V ++ +GKIVR +P G
Sbjct: 162 FLRTEKTEFNHIDEIIRRIALARFDVTINLSHNGKIVRQYRAVPEGG 208
>pdb|1A8Q|A Chain A, Bromoperoxidase A1
Length = 274
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 22/38 (57%)
Query: 67 TLVLSGGKDQLLPSQEEGQRLTSALPKSQLRSFEDHGH 104
TLV+ G DQ++P G++ +P ++L+ +E H
Sbjct: 215 TLVVHGDDDQVVPIDATGRKSAQIIPNAELKVYEGSSH 252
>pdb|1BKN|A Chain A, Crystal Structure Of An N-Terminal 40kd Fragment Of E.
Coli Dna Mismatch Repair Protein Mutl
pdb|1BKN|B Chain B, Crystal Structure Of An N-Terminal 40kd Fragment Of E.
Coli Dna Mismatch Repair Protein Mutl
Length = 352
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 136 FMPPTATEFNELNEENRWMSVLMSPVMLSTLEDGKIVRGLSGIPSEG 182
F+ TEFN ++E R +++ V ++ +GKIVR +P G
Sbjct: 163 FLRTEKTEFNHIDEIIRRIALARFDVTINLSHNGKIVRQYRAVPEGG 209
>pdb|1B62|A Chain A, Mutl Complexed With Adp
Length = 355
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 136 FMPPTATEFNELNEENRWMSVLMSPVMLSTLEDGKIVRGLSGIPSEG 182
F+ TEFN ++E R +++ V ++ +GKIVR +P G
Sbjct: 166 FLRTEKTEFNHIDEIIRRIALARFDVTINLSHNGKIVRQYRAVPEGG 212
>pdb|1HKH|A Chain A, Unligated Gamma Lactamase From An Aureobacterium Species
pdb|1HKH|B Chain B, Unligated Gamma Lactamase From An Aureobacterium Species
pdb|1HL7|A Chain A, Gamma Lactamase From An Aureobacterium Species In Complex
With 3a,4,7,7a-Tetrahydro-Benzo [1,3] Dioxol-2-One
pdb|1HL7|B Chain B, Gamma Lactamase From An Aureobacterium Species In Complex
With 3a,4,7,7a-Tetrahydro-Benzo [1,3] Dioxol-2-One
Length = 279
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 60 LHAVKAQ---TLVLSGGKDQLLPSQEEGQRLTSALPKSQLRSFEDHGHFLF 107
+ AV+A TL+L G KD +LP +R A+P++ E H L
Sbjct: 212 VEAVRAAGKPTLILHGTKDNILPIDATARRFHQAVPEADYVEVEGAPHGLL 262
>pdb|3QVM|A Chain A, The Structure Of Olei00960, A Hydrolase From Oleispira
Antarctica
pdb|3QVM|B Chain B, The Structure Of Olei00960, A Hydrolase From Oleispira
Antarctica
Length = 282
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Query: 52 ASAYANAR--LHAVKAQTLVLSGGKDQLLPSQEEGQRLTSALPKSQLRSFEDHGHFLFLE 109
A+ +++ R L + L+ KD L S E GQ +P SQL + GH L
Sbjct: 204 ATFFSDYRSLLEDISTPALIFQSAKDSL-ASPEVGQYXAENIPNSQLELIQAEGHCLHXT 262
Query: 110 DG 111
D
Sbjct: 263 DA 264
>pdb|1ZOI|A Chain A, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
pdb|1ZOI|B Chain B, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
pdb|1ZOI|C Chain C, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
Length = 276
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 23/45 (51%)
Query: 60 LHAVKAQTLVLSGGKDQLLPSQEEGQRLTSALPKSQLRSFEDHGH 104
L ++ LV+ G DQ++P + G LP L++++ + H
Sbjct: 212 LKGIQQPVLVMHGDDDQIVPYENSGVLSAKLLPNGALKTYKGYPH 256
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,494,332
Number of Sequences: 62578
Number of extensions: 467898
Number of successful extensions: 1012
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1003
Number of HSP's gapped (non-prelim): 10
length of query: 396
length of database: 14,973,337
effective HSP length: 101
effective length of query: 295
effective length of database: 8,652,959
effective search space: 2552622905
effective search space used: 2552622905
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)