Query 016024
Match_columns 396
No_of_seqs 160 out of 445
Neff 2.6
Searched_HMMs 29240
Date Mon Mar 25 06:35:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016024.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016024hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1irz_A ARR10-B; helix-turn-hel 99.9 2.5E-28 8.5E-33 189.2 6.6 60 244-304 2-61 (64)
2 2yus_A SWI/SNF-related matrix- 89.9 0.9 3.1E-05 35.6 6.8 50 244-299 13-62 (79)
3 2hzd_A Transcriptional enhance 89.6 0.29 9.9E-06 39.8 3.8 57 247-305 4-77 (82)
4 2yum_A ZZZ3 protein, zinc fing 87.8 1.1 3.8E-05 33.7 5.7 53 247-302 6-61 (75)
5 2cu7_A KIAA1915 protein; nucle 86.1 1.9 6.4E-05 32.5 6.2 50 247-302 7-56 (72)
6 1x41_A Transcriptional adaptor 81.8 2.2 7.6E-05 31.1 4.8 50 246-301 5-55 (60)
7 1ity_A TRF1; helix-turn-helix, 78.6 7.5 0.00026 28.8 6.9 55 243-300 4-58 (69)
8 2cqq_A RSGI RUH-037, DNAJ homo 78.3 6.4 0.00022 30.4 6.6 49 249-303 8-59 (72)
9 2cqr_A RSGI RUH-043, DNAJ homo 75.1 9.8 0.00034 29.5 6.9 53 246-301 15-68 (73)
10 2iw5_B Protein corest, REST co 74.2 5.4 0.00018 37.8 6.2 53 245-303 129-181 (235)
11 2xag_B REST corepressor 1; ami 72.5 5.2 0.00018 41.0 6.1 52 247-304 378-429 (482)
12 2elk_A SPCC24B10.08C protein; 69.9 7.6 0.00026 28.2 4.9 46 250-300 10-56 (58)
13 3sjm_A Telomeric repeat-bindin 64.4 19 0.00064 26.9 6.2 47 247-296 9-55 (64)
14 1guu_A C-MYB, MYB proto-oncoge 64.0 19 0.00065 25.0 5.8 46 249-299 3-48 (52)
15 2d9a_A B-MYB, MYB-related prot 63.0 28 0.00094 24.9 6.7 50 245-299 4-53 (60)
16 1wgx_A KIAA1903 protein; MYB D 55.0 26 0.0009 27.5 5.8 49 251-302 10-59 (73)
17 1gvd_A MYB proto-oncogene prot 52.7 39 0.0013 23.4 5.9 46 249-299 3-48 (52)
18 1w0t_A Telomeric repeat bindin 52.2 49 0.0017 23.1 6.4 48 249-299 2-49 (53)
19 2dim_A Cell division cycle 5-l 46.5 67 0.0023 23.6 6.6 48 247-299 7-54 (70)
20 2eqr_A N-COR1, N-COR, nuclear 45.2 18 0.00063 26.4 3.3 45 245-295 8-52 (61)
21 2aje_A Telomere repeat-binding 40.0 70 0.0024 26.4 6.4 51 243-296 7-59 (105)
22 2cjj_A Radialis; plant develop 38.7 39 0.0013 27.3 4.6 47 250-301 9-58 (93)
23 2yqk_A Arginine-glutamic acid 37.2 29 0.00099 25.7 3.3 53 247-307 7-59 (63)
24 2din_A Cell division cycle 5-l 34.6 96 0.0033 22.5 5.8 47 248-301 8-54 (66)
25 1gv2_A C-MYB, MYB proto-oncoge 31.1 1.2E+02 0.004 23.5 6.1 61 229-299 40-100 (105)
26 2roh_A RTBP1, telomere binding 28.6 1.7E+02 0.0057 24.9 7.0 55 243-303 25-81 (122)
27 1h8a_C AMV V-MYB, MYB transfor 27.6 1.4E+02 0.0048 24.0 6.2 61 229-299 63-123 (128)
28 3zqc_A MYB3; transcription-DNA 27.3 1.3E+02 0.0045 24.5 6.0 62 229-300 38-99 (131)
29 4eef_G F-HB80.4, designed hema 27.2 22 0.00074 28.5 1.2 45 250-297 21-66 (74)
30 1gv2_A C-MYB, MYB proto-oncoge 26.5 1.4E+02 0.0049 23.0 5.9 46 249-299 4-49 (105)
31 3osg_A MYB21; transcription-DN 26.3 1.2E+02 0.0042 24.5 5.7 62 229-300 46-107 (126)
32 1h89_C C-MYB, MYB proto-oncoge 26.2 1.4E+02 0.0047 24.9 6.1 61 229-299 94-154 (159)
33 2crg_A Metastasis associated p 25.3 64 0.0022 24.4 3.5 47 245-296 4-50 (70)
34 3osg_A MYB21; transcription-DN 24.8 1.7E+02 0.0057 23.7 6.2 50 245-300 7-56 (126)
35 2lm1_A Lysine-specific demethy 24.6 38 0.0013 26.9 2.3 33 254-287 44-80 (107)
36 2jxj_A Histone demethylase jar 24.5 21 0.00071 27.9 0.7 33 255-288 37-73 (96)
37 1c20_A DEAD ringer protein; DN 23.7 41 0.0014 27.8 2.4 44 255-299 53-103 (128)
38 2cxy_A BAF250B subunit, HBAF25 23.0 42 0.0014 27.7 2.3 32 255-287 52-87 (125)
39 2eqy_A RBP2 like, jumonji, at 22.8 49 0.0017 27.3 2.6 44 255-299 43-92 (122)
40 2k9n_A MYB24; R2R3 domain, DNA 22.5 1.9E+02 0.0064 22.7 5.9 45 250-299 2-46 (107)
41 1h89_C C-MYB, MYB proto-oncoge 21.6 2.2E+02 0.0076 23.6 6.5 62 229-299 42-103 (159)
42 1qgp_A Protein (double strande 21.4 1.2E+02 0.0041 22.9 4.4 46 252-300 11-56 (77)
43 2k9n_A MYB24; R2R3 domain, DNA 20.9 1.7E+02 0.0057 23.0 5.3 62 229-300 37-98 (107)
44 2juh_A Telomere binding protei 20.8 1.8E+02 0.0063 24.6 5.8 52 243-297 11-64 (121)
45 2jrz_A Histone demethylase jar 20.8 47 0.0016 27.2 2.1 44 255-299 41-90 (117)
No 1
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=99.95 E-value=2.5e-28 Score=189.19 Aligned_cols=60 Identities=47% Similarity=0.790 Sum_probs=57.0
Q ss_pred CCCCCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhhhhccc
Q 016024 244 SMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKT 304 (396)
Q Consensus 244 s~kKpRLrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~GLTr~hVKSHLQKYRl~k~ 304 (396)
+.+|+||+||+|||++||+||++|| .++||||+||++|+|+|||++||||||||||+..+
T Consensus 2 ~~~k~r~~WT~elH~~Fv~Av~~LG-~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~ 61 (64)
T 1irz_A 2 AQKKPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKFRVALK 61 (64)
T ss_dssp CCCCSSCSSCHHHHHHHHHHHHHHC-TTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhC-CCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999 79999999999999999999999999999998754
No 2
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=89.95 E-value=0.9 Score=35.57 Aligned_cols=50 Identities=16% Similarity=0.134 Sum_probs=41.0
Q ss_pred CCCCCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhh
Q 016024 244 SMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMY 299 (396)
Q Consensus 244 s~kKpRLrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~GLTr~hVKSHLQKY 299 (396)
.....+-.||+|=+.+|++||+..|+- =+.|-+.|+ +=|..+|+.|-++|
T Consensus 13 ~~~~~~~~WT~eEd~~Ll~~v~~~G~~----W~~IA~~v~--~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 13 KGASAGREWTEQETLLLLEALEMYKDD----WNKVSEHVG--SRTQDECILHFLRL 62 (79)
T ss_dssp CSSCCSCCCCHHHHHHHHHHHHHSSSC----HHHHHHHHS--SCCHHHHHHHHTTS
T ss_pred cccccCCCcCHHHHHHHHHHHHHhCCC----HHHHHHHcC--CCCHHHHHHHHHHh
Confidence 344556789999999999999999943 367777764 79999999999888
No 3
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=89.56 E-value=0.29 Score=39.75 Aligned_cols=57 Identities=25% Similarity=0.327 Sum_probs=37.3
Q ss_pred CCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHh---hc-C-------------CCCCCHHHHHHHhhhhhhcccC
Q 016024 247 APRMRWTTTLHARFVHAVELLGGHERATPKSVLE---LM-D-------------VKDLTLAHVKSHLQMYRTVKTT 305 (396)
Q Consensus 247 KpRLrWT~ELH~rFV~AVeqLGG~dkAtPK~ILe---lM-n-------------V~GLTr~hVKSHLQKYRl~k~t 305 (396)
+..-+|.++|-..|++|++.+-=.... |.+|. .| | -..=|+.+|+||||.-|..+..
T Consensus 4 ~~e~vW~~~lE~aF~eaL~~yp~~g~~--k~~ls~~gk~~gRNelIs~yI~~~tGk~RtrKQVSShiQvlk~~~~~ 77 (82)
T 2hzd_A 4 DAEGVWSPDIEQSFQEALSIYPPCGRR--KIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRKSR 77 (82)
T ss_dssp GGSCCSCHHHHHHHHHHHHHSCSSSCC--CCCHHHHCCCCCTHHHHHHHHHHHHSCCCCSHHHHHHHHHHHHHHTT
T ss_pred CcCCcCCHHHHHHHHHHHHHcCCCCcc--ceeecccccccchhHHHHHHHHHHHcccCCccchhHHHHHHHHHHhh
Confidence 345689999999999999877411112 22221 11 1 1456889999999988776543
No 4
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.76 E-value=1.1 Score=33.70 Aligned_cols=53 Identities=15% Similarity=0.201 Sum_probs=40.3
Q ss_pred CCCcccCHHHHHHHHHHHHHhCCCCCCCh---HHHHhhcCCCCCCHHHHHHHhhhhhhc
Q 016024 247 APRMRWTTTLHARFVHAVELLGGHERATP---KSVLELMDVKDLTLAHVKSHLQMYRTV 302 (396)
Q Consensus 247 KpRLrWT~ELH~rFV~AVeqLGG~dkAtP---K~ILelMnV~GLTr~hVKSHLQKYRl~ 302 (396)
..+-.||+|=+++|++||+.+| .+...| +.|-+.| +|=|-.+|+.|-|+|-..
T Consensus 6 ~~~~~WT~eEd~~L~~~v~~~g-~~~~~~~~W~~IA~~~--~~Rt~~qcr~r~~~~l~~ 61 (75)
T 2yum_A 6 SGNQLWTVEEQKKLEQLLIKYP-PEEVESRRWQKIADEL--GNRTAKQVASQVQKYFIK 61 (75)
T ss_dssp CCSSCCCHHHHHHHHHHHHHSC-CCSCHHHHHHHHHHHH--SSSCHHHHHHHHHHHHGG
T ss_pred CCCCCCCHHHHHHHHHHHHHhC-CCCCCcccHHHHHHHh--CCCCHHHHHHHHHHHHHH
Confidence 3445799999999999999999 222222 3455554 689999999999999654
No 5
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=86.10 E-value=1.9 Score=32.46 Aligned_cols=50 Identities=20% Similarity=0.274 Sum_probs=40.6
Q ss_pred CCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhhhhc
Q 016024 247 APRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTV 302 (396)
Q Consensus 247 KpRLrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~GLTr~hVKSHLQKYRl~ 302 (396)
..+-.||+|=++.|+++|+.+|- .=+.|-..| +|=|..+|+.|.++|-..
T Consensus 7 ~~~~~WT~eEd~~l~~~~~~~G~----~W~~Ia~~~--~~Rt~~q~k~r~~~~l~~ 56 (72)
T 2cu7_A 7 GYSVKWTIEEKELFEQGLAKFGR----RWTKISKLI--GSRTVLQVKSYARQYFKN 56 (72)
T ss_dssp SCCCCCCHHHHHHHHHHHHHTCS----CHHHHHHHH--SSSCHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHHCc----CHHHHHHHc--CCCCHHHHHHHHHHHHHH
Confidence 34568999999999999999993 346666654 789999999999988543
No 6
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=81.79 E-value=2.2 Score=31.08 Aligned_cols=50 Identities=22% Similarity=0.246 Sum_probs=39.7
Q ss_pred CCCCcccCHHHHHHHHHHHHHhC-CCCCCChHHHHhhcCCCCCCHHHHHHHhhhhhh
Q 016024 246 RAPRMRWTTTLHARFVHAVELLG-GHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 301 (396)
Q Consensus 246 kKpRLrWT~ELH~rFV~AVeqLG-G~dkAtPK~ILelMnV~GLTr~hVKSHLQKYRl 301 (396)
...|-.||+|=.+++++||+.+| +- =+.|-+.| ++=|-.+|+.|-++|=.
T Consensus 5 ~~~~~~WT~eED~~L~~~v~~~G~~~----W~~Ia~~~--~~Rt~~qcr~r~~~~l~ 55 (60)
T 1x41_A 5 SSGDPSWTAQEEMALLEAVMDCGFGN----WQDVANQM--CTKTKEECEKHYMKYFS 55 (60)
T ss_dssp CCCCSSSCHHHHHHHHHHHHHTCTTC----HHHHHHHH--TTSCHHHHHHHHHHHTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCcCc----HHHHHHHh--CCCCHHHHHHHHHHHcc
Confidence 34556799999999999999999 32 35666666 68899999999888743
No 7
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=78.58 E-value=7.5 Score=28.80 Aligned_cols=55 Identities=13% Similarity=0.151 Sum_probs=43.2
Q ss_pred CCCCCCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhhh
Q 016024 243 RSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYR 300 (396)
Q Consensus 243 rs~kKpRLrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~GLTr~hVKSHLQKYR 300 (396)
...++.|-.||+|=-++.+++|+.+|. -.=+.|.+.|.+.|=|-.+|+-+-..|-
T Consensus 4 ~~~~~~r~~WT~eED~~L~~~v~~~G~---~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l 58 (69)
T 1ity_A 4 KHRARKRQAWLWEEDKNLRSGVRKYGE---GNWSKILLHYKFNNRTSVMLKDRWRTMK 58 (69)
T ss_dssp TTCSSSCCCCCHHHHHHHHHHHHHHCS---SCHHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCC---CcHHHHHHHcCcCCCCHHHHHHHHHHHc
Confidence 346778889999999999999999991 1336788888766889999987766553
No 8
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=78.34 E-value=6.4 Score=30.41 Aligned_cols=49 Identities=12% Similarity=0.259 Sum_probs=38.8
Q ss_pred CcccCHHHHHHHHHHHHHhCCCCCCChH---HHHhhcCCCCCCHHHHHHHhhhhhhcc
Q 016024 249 RMRWTTTLHARFVHAVELLGGHERATPK---SVLELMDVKDLTLAHVKSHLQMYRTVK 303 (396)
Q Consensus 249 RLrWT~ELH~rFV~AVeqLGG~dkAtPK---~ILelMnV~GLTr~hVKSHLQKYRl~k 303 (396)
+-.||.|=..+|+.|+..+++ -+|. +|-+.| |=|-++|+.|-+++....
T Consensus 8 ~~~WT~eE~k~fe~al~~~p~---~t~~RW~~IA~~l---gRt~~eV~~~y~~L~~d~ 59 (72)
T 2cqq_A 8 APEWTEEDLSQLTRSMVKFPG---GTPGRWEKIAHEL---GRSVTDVTTKAKQLKDSV 59 (72)
T ss_dssp CCCCCHHHHHHHHHHHHHSCT---TCTTHHHHHHHHH---TSCHHHHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHHHHHCCC---CCCcHHHHHHHHh---CCCHHHHHHHHHHHHHhc
Confidence 447999999999999999983 3454 466676 579999999988876543
No 9
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=75.06 E-value=9.8 Score=29.48 Aligned_cols=53 Identities=9% Similarity=0.113 Sum_probs=40.6
Q ss_pred CCCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhh-cCCCCCCHHHHHHHhhhhhh
Q 016024 246 RAPRMRWTTTLHARFVHAVELLGGHERATPKSVLEL-MDVKDLTLAHVKSHLQMYRT 301 (396)
Q Consensus 246 kKpRLrWT~ELH~rFV~AVeqLGG~dkAtPK~ILel-MnV~GLTr~hVKSHLQKYRl 301 (396)
+..+-.||.|=..+|++||..+|. -+|.+--.+ .-|+|=|-.+|+.|-+.+..
T Consensus 15 ~~~~~~WT~eEd~~L~~al~~~g~---~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 15 RSAEEPWTQNQQKLLELALQQYPR---GSSDCWDKIARCVPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp TCSSCCCCHHHHHHHHHHHHHSCS---SSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred ccCCCCCCHHHHHHHHHHHHHcCC---CCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 444557999999999999999982 367654443 23479999999999887754
No 10
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=74.21 E-value=5.4 Score=37.75 Aligned_cols=53 Identities=21% Similarity=0.343 Sum_probs=43.8
Q ss_pred CCCCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhhhhcc
Q 016024 245 MRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVK 303 (396)
Q Consensus 245 ~kKpRLrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~GLTr~hVKSHLQKYRl~k 303 (396)
..+..-+||+|=++.|++|+...|- -=..|-++ |.+=|..+|+.|..+||...
T Consensus 129 ~~k~s~~WTeEE~~lFleAl~kYGK----DW~~IAk~--VgTKT~~QcKnfY~~~kKRl 181 (235)
T 2iw5_B 129 IQKCNARWTTEEQLLAVQAIRKYGR----DFQAISDV--IGNKSVVQVKNFFVNYRRRF 181 (235)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHHHSS----CHHHHHHH--HSSCCHHHHHHHHHHTTTTT
T ss_pred CCccCCCCCHHHHHHHHHHHHHHCc----CHHHHHHH--cCCCCHHHHHHHHHHHHHHh
Confidence 4467789999999999999999992 25667776 57899999999999998653
No 11
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=72.49 E-value=5.2 Score=40.96 Aligned_cols=52 Identities=21% Similarity=0.303 Sum_probs=43.0
Q ss_pred CCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhhhhccc
Q 016024 247 APRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKT 304 (396)
Q Consensus 247 KpRLrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~GLTr~hVKSHLQKYRl~k~ 304 (396)
+..-+||+|=|..|++||.+.|- -=+.|-+.++- =|..+|++|-++||....
T Consensus 378 ~~~~~WT~eE~~~f~~al~~yGk----dw~~IA~~VgT--KT~~Qvk~fy~~~kkr~~ 429 (482)
T 2xag_B 378 KCNARWTTEEQLLAVQAIRKYGR----DFQAISDVIGN--KSVVQVKNFFVNYRRRFN 429 (482)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHTT----CHHHHHHHHSS--CCHHHHHHHHHHTTTTTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHCc----CHHHHHHHhCC--CCHHHHHHHHHHHHHHhC
Confidence 55689999999999999999992 35677777664 499999999999987544
No 12
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=69.94 E-value=7.6 Score=28.15 Aligned_cols=46 Identities=17% Similarity=0.254 Sum_probs=35.5
Q ss_pred cccCHHHHHHHHHHHHHhC-CCCCCChHHHHhhcCCCCCCHHHHHHHhhhhh
Q 016024 250 MRWTTTLHARFVHAVELLG-GHERATPKSVLELMDVKDLTLAHVKSHLQMYR 300 (396)
Q Consensus 250 LrWT~ELH~rFV~AVeqLG-G~dkAtPK~ILelMnV~GLTr~hVKSHLQKYR 300 (396)
-.||+|=.+++++||++.| +- =+.|-+.|+. +=|..+++.|-++|-
T Consensus 10 ~~WT~eED~~L~~~v~~~G~~~----W~~IA~~~~~-~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 10 ENWGADEELLLIDACETLGLGN----WADIADYVGN-ARTKEECRDHYLKTY 56 (58)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTC----HHHHHHHHCS-SCCHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHCcCC----HHHHHHHHCC-CCCHHHHHHHHHHHc
Confidence 3599999999999999999 43 3455555532 678899998887763
No 13
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=64.38 E-value=19 Score=26.87 Aligned_cols=47 Identities=13% Similarity=0.169 Sum_probs=36.5
Q ss_pred CCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHh
Q 016024 247 APRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHL 296 (396)
Q Consensus 247 KpRLrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~GLTr~hVKSHL 296 (396)
+.|-.||+|=-++.+++|++.|. -.=+.|.+.+.+.|=|-.+++-.-
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~---~~W~~Ia~~~~~~~Rt~~qcr~Rw 55 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGE---GNWAAISKNYPFVNRTAVMIKDRW 55 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCT---TCHHHHHHHSCCSSCCHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHccCC---CchHHHHhhcCCCCCCHHHHHHHH
Confidence 34567999999999999999992 124678888877888888887543
No 14
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=63.97 E-value=19 Score=24.97 Aligned_cols=46 Identities=20% Similarity=0.250 Sum_probs=36.4
Q ss_pred CcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhh
Q 016024 249 RMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMY 299 (396)
Q Consensus 249 RLrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~GLTr~hVKSHLQKY 299 (396)
|-.||+|=..+++++|+++|. ..=+.|-+.| +|=|-.+|+.+-++|
T Consensus 3 ~~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~--~~Rt~~qcr~Rw~~~ 48 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQNGT---DDWKVIANYL--PNRTDVQCQHRWQKV 48 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHCS---SCHHHHHHTS--TTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCC---CCHHHHHHHc--CCCCHHHHHHHHHHH
Confidence 457999999999999999992 2346676665 588899998877665
No 15
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=63.02 E-value=28 Score=24.88 Aligned_cols=50 Identities=12% Similarity=0.107 Sum_probs=38.2
Q ss_pred CCCCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhh
Q 016024 245 MRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMY 299 (396)
Q Consensus 245 ~kKpRLrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~GLTr~hVKSHLQKY 299 (396)
....|-.||+|=.++++++|.++|. -.=+.|-+.| +|=|-.+|+.+-.+|
T Consensus 4 p~~~k~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~--~~Rt~~qcr~Rw~~~ 53 (60)
T 2d9a_A 4 GSSGKVKWTHEEDEQLRALVRQFGQ---QDWKFLASHF--PNRTDQQCQYRWLRV 53 (60)
T ss_dssp CCCCCSCCCHHHHHHHHHHHHHTCT---TCHHHHHHHC--SSSCHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC---CCHHHHHHHc--cCCCHHHHHHHHHHH
Confidence 3456678999999999999999992 1235666665 688899998877766
No 16
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=55.01 E-value=26 Score=27.48 Aligned_cols=49 Identities=12% Similarity=0.091 Sum_probs=37.6
Q ss_pred ccCHHHHHHHHHHHHHhCCCCCCChHHHHhh-cCCCCCCHHHHHHHhhhhhhc
Q 016024 251 RWTTTLHARFVHAVELLGGHERATPKSVLEL-MDVKDLTLAHVKSHLQMYRTV 302 (396)
Q Consensus 251 rWT~ELH~rFV~AVeqLGG~dkAtPK~ILel-MnV~GLTr~hVKSHLQKYRl~ 302 (396)
.||.+=..+|.+|+..++ +.+|-+-..+ .-|+|=|.++|..|-+.....
T Consensus 10 ~WT~eE~k~fe~ALa~~~---~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~ 59 (73)
T 1wgx_A 10 EWNEKELQKLHCAFASLP---KHKPGFWSEVAAAVGSRSPEECQRKYMENPRG 59 (73)
T ss_dssp CCCHHHHHHHHHHHHHSC---SSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSS
T ss_pred CCCHHHHHHHHHHHHHCC---CCCccHHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence 599999999999999987 4477755442 346789999999886655433
No 17
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=52.69 E-value=39 Score=23.39 Aligned_cols=46 Identities=13% Similarity=0.173 Sum_probs=35.3
Q ss_pred CcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhh
Q 016024 249 RMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMY 299 (396)
Q Consensus 249 RLrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~GLTr~hVKSHLQKY 299 (396)
+-.||+|=..+++++|++.|. ..=+.|.+.| +|=|-.+|+.+-.+|
T Consensus 3 k~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~--~~Rt~~qcr~Rw~~~ 48 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKYGP---KRWSVIAKHL--KGRIGKQCRERWHNH 48 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHHCT---TCHHHHHTTS--TTCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCc---ChHHHHHHHc--CCCCHHHHHHHHHHH
Confidence 447999999999999999992 1234566665 688889998877766
No 18
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=52.21 E-value=49 Score=23.12 Aligned_cols=48 Identities=15% Similarity=0.160 Sum_probs=36.7
Q ss_pred CcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhh
Q 016024 249 RMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMY 299 (396)
Q Consensus 249 RLrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~GLTr~hVKSHLQKY 299 (396)
|-.||+|=.+..+++|+..|. -.=+.|.+.|+..|=|-.+++-+-..|
T Consensus 2 r~~WT~eEd~~L~~~v~~~G~---~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~ 49 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKYGE---GNWSKILLHYKFNNRTSVMLKDRWRTM 49 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHHCT---TCHHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCc---CCHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 457999999999999999992 134677788765577888888665544
No 19
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.47 E-value=67 Score=23.58 Aligned_cols=48 Identities=15% Similarity=0.138 Sum_probs=38.1
Q ss_pred CCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhh
Q 016024 247 APRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMY 299 (396)
Q Consensus 247 KpRLrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~GLTr~hVKSHLQKY 299 (396)
..|-.||+|=-++++++|.++|- ..=+.|-+.|+ +=|..+|+-+-..|
T Consensus 7 ~k~~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~l~--~Rt~~qcr~Rw~~~ 54 (70)
T 2dim_A 7 GKGGVWRNTEDEILKAAVMKYGK---NQWSRIASLLH--RKSAKQCKARWYEW 54 (70)
T ss_dssp STTCCCCHHHHHHHHHHHHHTCS---SCHHHHHHHST--TCCHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHHCc---CCHHHHHHHhc--CCCHHHHHHHHHHH
Confidence 44568999999999999999991 23467777775 88999999877766
No 20
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.18 E-value=18 Score=26.42 Aligned_cols=45 Identities=9% Similarity=-0.040 Sum_probs=34.3
Q ss_pred CCCCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHH
Q 016024 245 MRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSH 295 (396)
Q Consensus 245 ~kKpRLrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~GLTr~hVKSH 295 (396)
.|+..-.||+|=|+.|++|+.+.|- -=..|-++ |++=|..+|.-+
T Consensus 8 ~r~~~~~WT~eE~~~F~~~~~~~gk----~w~~Ia~~--l~~rt~~~~v~~ 52 (61)
T 2eqr_A 8 DRQFMNVWTDHEKEIFKDKFIQHPK----NFGLIASY--LERKSVPDCVLY 52 (61)
T ss_dssp CCSCCCSCCHHHHHHHHHHHHHSTT----CHHHHHHH--CTTSCHHHHHHH
T ss_pred ccccCCCCCHHHHHHHHHHHHHhCC----CHHHHHHH--cCCCCHHHHHHH
Confidence 3466678999999999999999982 23566555 468888888754
No 21
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=40.02 E-value=70 Score=26.44 Aligned_cols=51 Identities=22% Similarity=0.158 Sum_probs=38.7
Q ss_pred CCCCCCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcC--CCCCCHHHHHHHh
Q 016024 243 RSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMD--VKDLTLAHVKSHL 296 (396)
Q Consensus 243 rs~kKpRLrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMn--V~GLTr~hVKSHL 296 (396)
...++.|-.||+|=-+..+++|+.+|. -.=+.|++.+. .++=|--+||-+-
T Consensus 7 ~~~rr~r~~WT~EEd~~L~~gV~k~G~---g~W~~I~~~~~~~f~~RT~v~lKdrW 59 (105)
T 2aje_A 7 DPQRRIRRPFSVAEVEALVQAVEKLGT---GRWRDVKLCAFEDADHRTYVDLKDKW 59 (105)
T ss_dssp --CCCCCCSCCHHHHHHHHHHHHHHCS---SSHHHHHSSSSSSTTCCCHHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCC---CChHHHHHHhccccCCCCHHHHHHHH
Confidence 346788999999999999999999992 12357777652 3788999998643
No 22
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=38.72 E-value=39 Score=27.27 Aligned_cols=47 Identities=21% Similarity=0.372 Sum_probs=37.3
Q ss_pred cccCHHHHHHHHHHHHHhCCCCCCChH---HHHhhcCCCCCCHHHHHHHhhhhhh
Q 016024 250 MRWTTTLHARFVHAVELLGGHERATPK---SVLELMDVKDLTLAHVKSHLQMYRT 301 (396)
Q Consensus 250 LrWT~ELH~rFV~AVeqLGG~dkAtPK---~ILelMnV~GLTr~hVKSHLQKYRl 301 (396)
-.||.|=...|++|+..+| . -+|. +|-+.| +|=|-++|+.|-+++..
T Consensus 9 ~~WT~eEd~~L~~al~~~~-~--~~~~rW~~IA~~v--pGRT~~q~k~ry~~l~~ 58 (93)
T 2cjj_A 9 RPWSAKENKAFERALAVYD-K--DTPDRWANVARAV--EGRTPEEVKKHYEILVE 58 (93)
T ss_dssp CSCCHHHHHHHHHHHHHSC-T--TCTTHHHHHHHHS--TTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcC-C--CCCchHHHHHHHc--CCCCHHHHHHHHHHHHH
Confidence 4699999999999999998 2 2554 455544 69999999999888754
No 23
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.20 E-value=29 Score=25.71 Aligned_cols=53 Identities=17% Similarity=0.220 Sum_probs=35.3
Q ss_pred CCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhhhhcccCCc
Q 016024 247 APRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDR 307 (396)
Q Consensus 247 KpRLrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~GLTr~hVKSHLQKYRl~k~t~r 307 (396)
..+-.||+|=+++|.+|+.+.| -+ =..|...| |+.-|..+|. +-|=+.|++++
T Consensus 7 ~~~~~WT~eE~~~Fe~~l~~yG-Kd---f~~I~~~~-v~~Kt~~~~v---~fYY~wKkt~~ 59 (63)
T 2yqk_A 7 GIEKCWTEDEVKRFVKGLRQYG-KN---FFRIRKEL-LPNKETGELI---TFYYYWKKTSG 59 (63)
T ss_dssp CCCCSCCHHHHHHHHHHHHHTC-SC---HHHHHHHS-CTTSCHHHHH---HHHHHHHCSSC
T ss_pred cCCCCcCHHHHHHHHHHHHHhC-cc---HHHHHHHH-cCCCcHHHHH---HHHhcccCCCC
Confidence 4456899999999999999999 22 23444311 5677877775 44445455443
No 24
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.60 E-value=96 Score=22.47 Aligned_cols=47 Identities=13% Similarity=0.324 Sum_probs=37.2
Q ss_pred CCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhhhh
Q 016024 248 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 301 (396)
Q Consensus 248 pRLrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~GLTr~hVKSHLQKYRl 301 (396)
.+-.||.|=..+++++|+.+|- .=..|-++| |=|-.+|+.|-+.|-.
T Consensus 8 ~k~~WT~eED~~L~~~~~~~g~----~W~~Ia~~~---gRt~~qcr~Rw~~~l~ 54 (66)
T 2din_A 8 KKTEWSREEEEKLLHLAKLMPT----QWRTIAPII---GRTAAQCLEHYEFLLD 54 (66)
T ss_dssp SCCCCCHHHHHHHHHHHHHCTT----CHHHHHHHH---SSCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCC----CHHHHhccc---CcCHHHHHHHHHHHhC
Confidence 3457999999999999999983 346666654 5899999999888744
No 25
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=31.05 E-value=1.2e+02 Score=23.55 Aligned_cols=61 Identities=18% Similarity=0.245 Sum_probs=44.2
Q ss_pred cchhhhccccCCCCCCCCCCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhh
Q 016024 229 GLMRSRFMSRFPAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMY 299 (396)
Q Consensus 229 g~~r~rf~~~~p~krs~kKpRLrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~GLTr~hVKSHLQKY 299 (396)
.-.|+||.+.+.-. -.+-.||+|=...++++|.++|. .=..|-+. ++|=|..+|+.+-..+
T Consensus 40 ~qcr~Rw~~~l~p~----~~~~~Wt~eEd~~L~~~~~~~G~----~W~~Ia~~--l~gRt~~~~k~rw~~~ 100 (105)
T 1gv2_A 40 KQCRERWHNHLNPE----VKKTSWTEEEDRIIYQAHKRLGN----RWAEIAKL--LPGRTDNAIKNHWNST 100 (105)
T ss_dssp HHHHHHHHHTTCCC----CCCCCCCHHHHHHHHHHHHHHSS----CHHHHHTT--CTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCc----ccccCCCHHHHHHHHHHHHHhCC----CHHHHHHH--cCCCCHHHHHHHHHHH
Confidence 44678887655322 23457999999999999999993 23456655 4899999999886544
No 26
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=28.59 E-value=1.7e+02 Score=24.86 Aligned_cols=55 Identities=25% Similarity=0.221 Sum_probs=40.9
Q ss_pred CCCCCCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhc--CCCCCCHHHHHHHhhhhhhcc
Q 016024 243 RSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELM--DVKDLTLAHVKSHLQMYRTVK 303 (396)
Q Consensus 243 rs~kKpRLrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelM--nV~GLTr~hVKSHLQKYRl~k 303 (396)
...++.|-.||+|=-+..+++|+++|. -.=+.|++.+ ..++=|--++|- |||...
T Consensus 25 ~~~rr~r~~WT~EEd~~L~~gV~k~G~---g~W~~I~~~~~~~~~~RT~vdlKd---RWrnll 81 (122)
T 2roh_A 25 FGQRRIRRPFTVAEVELLVEAVEHLGT---GRWRDVKFRAFENVHHRTYVDLKD---KWKTLV 81 (122)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHHSS---SCHHHHHHHHHSSSCCCCHHHHHH---HHHHHH
T ss_pred cCCCCCCCCCCHHHHHHHHHHHHHHCC---CChHHHHHHhccccCCCCHHHHHH---HHHHHH
Confidence 456788899999999999999999992 1234676654 347889999984 455433
No 27
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=27.56 E-value=1.4e+02 Score=24.05 Aligned_cols=61 Identities=20% Similarity=0.252 Sum_probs=44.4
Q ss_pred cchhhhccccCCCCCCCCCCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhh
Q 016024 229 GLMRSRFMSRFPAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMY 299 (396)
Q Consensus 229 g~~r~rf~~~~p~krs~kKpRLrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~GLTr~hVKSHLQKY 299 (396)
.-.|+||.+.+... ..+-.||+|=...++++|.++|. .=..|-+.| +|=|..+|+.+-..+
T Consensus 63 ~qcr~Rw~~~l~p~----~~~~~WT~eEd~~L~~~~~~~G~----~W~~Ia~~l--~gRt~~~~k~r~~~~ 123 (128)
T 1h8a_C 63 KQCRERWHNHLNPE----VKKTSWTEEEDRIIYQAHKRLGN----RWAEIAKLL--PGRTDNAVKNHWNST 123 (128)
T ss_dssp HHHHHHHHHTTCSS----SCCSCCCHHHHHHHHHHHHHHCS----CHHHHGGGS--TTCCHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccc----cccccCCHHHHHHHHHHHHHHCc----CHHHHHHHC--CCCCHHHHHHHHHHH
Confidence 34678887655322 23457999999999999999993 234666654 799999999886544
No 28
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=27.27 E-value=1.3e+02 Score=24.45 Aligned_cols=62 Identities=15% Similarity=0.188 Sum_probs=45.0
Q ss_pred cchhhhccccCCCCCCCCCCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhhh
Q 016024 229 GLMRSRFMSRFPAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYR 300 (396)
Q Consensus 229 g~~r~rf~~~~p~krs~kKpRLrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~GLTr~hVKSHLQKYR 300 (396)
.-.|+||.+.+.-. ..+=.||+|=...++++|.++|.- =..|-+.| +|=|..+|+.+-..|-
T Consensus 38 ~qcr~Rw~~~l~p~----~~~~~Wt~eEd~~L~~~~~~~G~~----W~~Ia~~l--~gRt~~~~k~rw~~~l 99 (131)
T 3zqc_A 38 KQCRERWFNHLDPA----VVKHAWTPEEDETIFRNYLKLGSK----WSVIAKLI--PGRTDNAIKNRWNSSI 99 (131)
T ss_dssp HHHHHHHHHHTSTT----CCCSCCCHHHHHHHHHHHHHSCSC----HHHHTTTS--TTCCHHHHHHHHHHTT
T ss_pred HHHHHHHhhccCcc----ccCCCCCHHHHHHHHHHHHHHCcC----HHHHHHHc--CCCCHHHHHHHHHHHH
Confidence 34688887765422 122369999999999999999942 45566654 6999999998876654
No 29
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=27.24 E-value=22 Score=28.48 Aligned_cols=45 Identities=24% Similarity=0.321 Sum_probs=34.4
Q ss_pred cccCHHHHHHHHHHHHHhCCCCCCChHHHHhh-cCCCCCCHHHHHHHhh
Q 016024 250 MRWTTTLHARFVHAVELLGGHERATPKSVLEL-MDVKDLTLAHVKSHLQ 297 (396)
Q Consensus 250 LrWT~ELH~rFV~AVeqLGG~dkAtPK~ILel-MnV~GLTr~hVKSHLQ 297 (396)
-.||.|=...|..|+...+ +-+|.+--.+ --|+|=|.+.|+.|-|
T Consensus 21 ~~WT~eE~K~FE~ALa~yp---~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 21 RPWKFSENIAFEIALSFTN---KDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp -CCCTTHHHHHHHHTSSSC---SSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCHHHHHHHHHHHHHCC---CCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 3699999999999998886 4566654433 2357999999999866
No 30
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=26.48 E-value=1.4e+02 Score=23.01 Aligned_cols=46 Identities=13% Similarity=0.159 Sum_probs=35.9
Q ss_pred CcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhh
Q 016024 249 RMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMY 299 (396)
Q Consensus 249 RLrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~GLTr~hVKSHLQKY 299 (396)
+-.||+|=-++++++|+..|. -.=+.|-+.| +|=|..+|+.+-.+|
T Consensus 4 k~~WT~eED~~L~~~v~~~g~---~~W~~Ia~~l--~~Rt~~qcr~Rw~~~ 49 (105)
T 1gv2_A 4 KGPWTKEEDQRVIKLVQKYGP---KRWSVIAKHL--KGRIGKQCRERWHNH 49 (105)
T ss_dssp CSCCCHHHHHHHHHHHHHHCT---TCHHHHHTTS--TTCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCC---CcHHHHhhhh--cCCCHHHHHHHHHhc
Confidence 447999999999999999993 1234677766 688999998776665
No 31
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=26.33 E-value=1.2e+02 Score=24.50 Aligned_cols=62 Identities=16% Similarity=0.222 Sum_probs=45.3
Q ss_pred cchhhhccccCCCCCCCCCCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhhh
Q 016024 229 GLMRSRFMSRFPAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYR 300 (396)
Q Consensus 229 g~~r~rf~~~~p~krs~kKpRLrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~GLTr~hVKSHLQKYR 300 (396)
.-.|+||.+.+... ..+-.||+|=.++++++|.++|. .=..|-+. ++|=|..+|+.+-..+.
T Consensus 46 ~qcr~Rw~~~l~p~----~~~~~WT~eEd~~L~~~v~~~G~----~W~~Ia~~--l~gRt~~~~k~rw~~l~ 107 (126)
T 3osg_A 46 RQCRDRWKNYLAPS----ISHTPWTAEEDALLVQKIQEYGR----QWAIIAKF--FPGRTDIHIKNRWVTIS 107 (126)
T ss_dssp HHHHHHHHHHTSTT----SCCSCCCHHHHHHHHHHHHHHCS----CHHHHHTT--STTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhhhcccc----cccccCCHHHHHHHHHHHHHHCc----CHHHHHHH--cCCCCHHHHHHHHHHHH
Confidence 35688887765322 22336999999999999999993 24566665 47999999998876554
No 32
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=26.15 E-value=1.4e+02 Score=24.90 Aligned_cols=61 Identities=18% Similarity=0.241 Sum_probs=44.7
Q ss_pred cchhhhccccCCCCCCCCCCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhh
Q 016024 229 GLMRSRFMSRFPAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMY 299 (396)
Q Consensus 229 g~~r~rf~~~~p~krs~kKpRLrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~GLTr~hVKSHLQKY 299 (396)
--.|.||.+.+.. ...+-.||+|=...++++|.++|. .=..|-+. ++|=|..+|+.+-..+
T Consensus 94 ~qcr~Rw~~~l~p----~~~~~~WT~eEd~~L~~~~~~~g~----~W~~Ia~~--l~gRt~~~~knr~~~~ 154 (159)
T 1h89_C 94 KQCRERWHNHLNP----EVKKTSWTEEEDRIIYQAHKRLGN----RWAEIAKL--LPGRTDNAIKNHWNST 154 (159)
T ss_dssp HHHHHHHHHTTCT----TSCCSCCCHHHHHHHHHHHHHHCS----CHHHHHTT--STTCCHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCc----cccccCCChHHHHHHHHHHHHHCC----CHHHHHHH--CCCCCHHHHHHHHHHH
Confidence 3467788766532 234567999999999999999993 23466665 4899999999886544
No 33
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=25.33 E-value=64 Score=24.40 Aligned_cols=47 Identities=13% Similarity=0.162 Sum_probs=33.7
Q ss_pred CCCCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHh
Q 016024 245 MRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHL 296 (396)
Q Consensus 245 ~kKpRLrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~GLTr~hVKSHL 296 (396)
.|+..-.||+|=+..|.+|+...| -+ =..|...| |+.-|..+|..+-
T Consensus 4 ~r~~~~~WT~eE~~~Fe~~l~~yG-Kd---f~~I~~~~-v~~Kt~~~~v~fY 50 (70)
T 2crg_A 4 GSSGMEEWSASEACLFEEALEKYG-KD---FNDIRQDF-LPWKSLTSIIEYY 50 (70)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHHTC-SC---HHHHHHTT-CSSSCHHHHHHHH
T ss_pred cccCCCCCCHHHHHHHHHHHHHhC-cc---HHHHHHHH-cCCCCHHHHHHHH
Confidence 456667899999999999999999 22 23443311 6778888877554
No 34
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=24.83 E-value=1.7e+02 Score=23.73 Aligned_cols=50 Identities=14% Similarity=0.153 Sum_probs=38.3
Q ss_pred CCCCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhhh
Q 016024 245 MRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYR 300 (396)
Q Consensus 245 ~kKpRLrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~GLTr~hVKSHLQKYR 300 (396)
....|-.||+|=-++.+++|++.|. .=+.|-+.| +|=|..+|..+-..|-
T Consensus 7 ~~~kk~~WT~eED~~L~~~v~~~G~----~W~~Ia~~~--~~Rt~~qcr~Rw~~~l 56 (126)
T 3osg_A 7 KAAKKQKFTPEEDEMLKRAVAQHGS----DWKMIAATF--PNRNARQCRDRWKNYL 56 (126)
T ss_dssp CBCSSCCCCHHHHHHHHHHHHHHTT----CHHHHHHTC--TTCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC----CHHHHHHHc--CCCCHHHHHHHHhhhc
Confidence 3456678999999999999999993 456777765 4778888887666553
No 35
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=24.63 E-value=38 Score=26.87 Aligned_cols=33 Identities=24% Similarity=0.165 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHhCCCCCCCh----HHHHhhcCCCCC
Q 016024 254 TTLHARFVHAVELLGGHERATP----KSVLELMDVKDL 287 (396)
Q Consensus 254 ~ELH~rFV~AVeqLGG~dkAtP----K~ILelMnV~GL 287 (396)
-+|++.|.. |..+||.++.+- +.|.+.|+++.-
T Consensus 44 vdL~~Ly~~-V~~~GG~~~V~~~~~W~~va~~lg~~~~ 80 (107)
T 2lm1_A 44 LDLYTLHRI-VQEEGGMEQTTKDRKWAKVANRMQYPSS 80 (107)
T ss_dssp CCHHHHHHH-HHHHTCHHHHHHHTTHHHHHHHTTCCCC
T ss_pred ecHHHHHHH-HHHhcCHHHhcccCcHHHHHHHhCCCCC
Confidence 378998876 678999887654 467889999763
No 36
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=24.54 E-value=21 Score=27.91 Aligned_cols=33 Identities=24% Similarity=0.037 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHhCCCCCCCh----HHHHhhcCCCCCC
Q 016024 255 TLHARFVHAVELLGGHERATP----KSVLELMDVKDLT 288 (396)
Q Consensus 255 ELH~rFV~AVeqLGG~dkAtP----K~ILelMnV~GLT 288 (396)
+|++.|.. |..+||.++.+- +.|.+.|+++.-+
T Consensus 37 DL~~Ly~~-V~~~GG~~~V~~~~~W~~v~~~lg~~~~~ 73 (96)
T 2jxj_A 37 DLYALSKI-VASKGGFEMVTKEKKWSKVGSRLGYLPGK 73 (96)
T ss_dssp CCHHHHHH-HHHHHTTHHHHHHTTHHHHHHHHTCCSCS
T ss_pred cHHHHHHH-HHHcCCHHHHccCCcHHHHHHHhCCCCcC
Confidence 68888876 778899887664 4678889986533
No 37
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=23.74 E-value=41 Score=27.80 Aligned_cols=44 Identities=14% Similarity=0.184 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHhCCCCCCCh----HHHHhhcCCCCC-C--HHHHHHHhhhh
Q 016024 255 TLHARFVHAVELLGGHERATP----KSVLELMDVKDL-T--LAHVKSHLQMY 299 (396)
Q Consensus 255 ELH~rFV~AVeqLGG~dkAtP----K~ILelMnV~GL-T--r~hVKSHLQKY 299 (396)
+|++.|.. |..+||.++.+- +.|.+.||++.- | -..++.|-.||
T Consensus 53 DL~~Ly~~-V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~ 103 (128)
T 1c20_A 53 DLYELYNL-VIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKY 103 (128)
T ss_dssp CHHHHHHH-HHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHH
T ss_pred cHHHHHHH-HHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHH
Confidence 78988876 678999887654 467889999752 2 34566655554
No 38
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=23.02 E-value=42 Score=27.68 Aligned_cols=32 Identities=19% Similarity=0.327 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHhCCCCCCCh----HHHHhhcCCCCC
Q 016024 255 TLHARFVHAVELLGGHERATP----KSVLELMDVKDL 287 (396)
Q Consensus 255 ELH~rFV~AVeqLGG~dkAtP----K~ILelMnV~GL 287 (396)
+|++.|.. |..+||.++.+- +.|.+.|+++.-
T Consensus 52 DL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~~ 87 (125)
T 2cxy_A 52 DLFRLYVC-VKEIGGLAQVNKNKKWRELATNLNVGTS 87 (125)
T ss_dssp CHHHHHHH-HHHHTSHHHHHHHTCHHHHHHHTTSCSS
T ss_pred cHHHHHHH-HHHcCCHHHhcccCcHHHHHHHhCCCCC
Confidence 78888876 678999886654 467889999864
No 39
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=22.81 E-value=49 Score=27.31 Aligned_cols=44 Identities=16% Similarity=0.147 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHhCCCCCCCh----HHHHhhcCCCCCCH--HHHHHHhhhh
Q 016024 255 TLHARFVHAVELLGGHERATP----KSVLELMDVKDLTL--AHVKSHLQMY 299 (396)
Q Consensus 255 ELH~rFV~AVeqLGG~dkAtP----K~ILelMnV~GLTr--~hVKSHLQKY 299 (396)
+|++.|.. |..+||.++.+- +.|.+.|+++.-+. ..++.|=.||
T Consensus 43 DLy~Ly~~-V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~ 92 (122)
T 2eqy_A 43 DLFQLNKL-VAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERI 92 (122)
T ss_dssp CHHHHHHH-HHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHT
T ss_pred cHHHHHHH-HHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHH
Confidence 78888876 778999887654 46788999976331 2444444444
No 40
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=22.46 E-value=1.9e+02 Score=22.71 Aligned_cols=45 Identities=13% Similarity=0.160 Sum_probs=33.9
Q ss_pred cccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhh
Q 016024 250 MRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMY 299 (396)
Q Consensus 250 LrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~GLTr~hVKSHLQKY 299 (396)
-.||+|=-++++++|+..|. -.=+.|-+.|+ |=|..+|.-+-..|
T Consensus 2 ~~Wt~eED~~L~~~v~~~g~---~~W~~Ia~~~~--~Rt~~qcr~Rw~~~ 46 (107)
T 2k9n_A 2 VKFTEEEDLKLQQLVMRYGA---KDWIRISQLMI--TRNPRQCRERWNNY 46 (107)
T ss_dssp CSSCHHHHHHHHHHHHHHCS---SCHHHHHHHTT--TSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCC---CCHHHHhhhcC--CCCHHHHHHHHHHH
Confidence 47999999999999999993 23456777764 77888887655444
No 41
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=21.56 E-value=2.2e+02 Score=23.63 Aligned_cols=62 Identities=11% Similarity=0.113 Sum_probs=44.4
Q ss_pred cchhhhccccCCCCCCCCCCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhh
Q 016024 229 GLMRSRFMSRFPAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMY 299 (396)
Q Consensus 229 g~~r~rf~~~~p~krs~kKpRLrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~GLTr~hVKSHLQKY 299 (396)
.-.|+|+.+.+.. ...+-.||+|=-.+++++|+.+|. -.=+.|-+.| +|=|..+|+.+-..|
T Consensus 42 ~qcr~Rw~~~l~p----~~~~~~Wt~eEd~~L~~~v~~~g~---~~W~~Ia~~l--~~Rt~~qcr~Rw~~~ 103 (159)
T 1h89_C 42 VQCQHRWQKVLNP----ELIKGPWTKEEDQRVIKLVQKYGP---KRWSVIAKHL--KGRIGKQCRERWHNH 103 (159)
T ss_dssp -CHHHHHHTTTCT----TCCCSCCCHHHHHHHHHHHHHHCS---CCHHHHHHTS--TTCCHHHHHHHHHHT
T ss_pred HHHHHHHHHccCC----CcCCCCCChHHHHHHHHHHHHhCc---ccHHHHHHHc--CCCCHHHHHHHHHHH
Confidence 3467888765532 234567999999999999999993 1235676666 688999998876655
No 42
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=21.42 E-value=1.2e+02 Score=22.85 Aligned_cols=46 Identities=13% Similarity=0.117 Sum_probs=35.3
Q ss_pred cCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhhh
Q 016024 252 WTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYR 300 (396)
Q Consensus 252 WT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~GLTr~hVKSHLQKYR 300 (396)
=++++.++-++++...|--+..+.+.|.+.++|+ +..|..||.+-.
T Consensus 11 ~~~~~~~~IL~~L~~~~~~~~~t~~eLA~~Lgvs---~~tV~~~L~~L~ 56 (77)
T 1qgp_A 11 IYQDQEQRILKFLEELGEGKATTAHDLSGKLGTP---KKEINRVLYSLA 56 (77)
T ss_dssp HHHHHHHHHHHHHHHHCSSSCEEHHHHHHHHCCC---HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHCcC---HHHHHHHHHHHH
Confidence 3677888889999999833578999999999854 566777776553
No 43
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=20.95 E-value=1.7e+02 Score=22.99 Aligned_cols=62 Identities=10% Similarity=0.136 Sum_probs=45.4
Q ss_pred cchhhhccccCCCCCCCCCCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhhh
Q 016024 229 GLMRSRFMSRFPAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYR 300 (396)
Q Consensus 229 g~~r~rf~~~~p~krs~kKpRLrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~GLTr~hVKSHLQKYR 300 (396)
.-.|+||.+.+... -.+-.||+|=...++++|.++|. .=..|-+.| +|=|..+|+.+-..+.
T Consensus 37 ~qcr~Rw~~~L~p~----i~~~~WT~eEd~~L~~~~~~~G~----~W~~Ia~~l--~gRt~~~~k~rw~~l~ 98 (107)
T 2k9n_A 37 RQCRERWNNYINPA----LRTDPWSPEEDMLLDQKYAEYGP----KWNKISKFL--KNRSDNNIRNRWMMIA 98 (107)
T ss_dssp HHHHHHHHHHSSSC----CTTCCCCHHHHHHHHHHHHHTCS----CHHHHHHHH--SSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccc----ccccccCHHHHHHHHHHHHHhCc----CHHHHHHHC--CCCCHHHHHHHHHHHH
Confidence 34678887655322 23457999999999999999993 235666665 7999999998876554
No 44
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=20.82 E-value=1.8e+02 Score=24.55 Aligned_cols=52 Identities=23% Similarity=0.161 Sum_probs=40.1
Q ss_pred CCCCCCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcC--CCCCCHHHHHHHhh
Q 016024 243 RSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMD--VKDLTLAHVKSHLQ 297 (396)
Q Consensus 243 rs~kKpRLrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMn--V~GLTr~hVKSHLQ 297 (396)
.+.++.|-.||+|=-+..+++|+++|. -.=+.|++.+. .+|=|--+||-+..
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~---G~W~~Ia~~~~~~f~~RT~v~lKdRWr 64 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGT---GRWRDVKMRAFDNADHRTYVDLKDKWK 64 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGG---GCHHHHHHHHCSCCSSCCSHHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCC---CCHHHHHHHhccccCCCCHHHHHHHHH
Confidence 457888999999999999999999992 12357777764 37888888886443
No 45
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=20.79 E-value=47 Score=27.18 Aligned_cols=44 Identities=18% Similarity=0.064 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHhCCCCCCCh----HHHHhhcCCCCCC--HHHHHHHhhhh
Q 016024 255 TLHARFVHAVELLGGHERATP----KSVLELMDVKDLT--LAHVKSHLQMY 299 (396)
Q Consensus 255 ELH~rFV~AVeqLGG~dkAtP----K~ILelMnV~GLT--r~hVKSHLQKY 299 (396)
+|++.|.. |..+||.++.+- +.|.+.|+++.-| -..++.|=.||
T Consensus 41 DL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~ 90 (117)
T 2jrz_A 41 DLYSLSKI-VVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERI 90 (117)
T ss_dssp CHHHHHHH-HHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHT
T ss_pred cHHHHHHH-HHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHH
Confidence 78888876 678999887654 4678899997433 23455554444
Done!