BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016025
(396 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1MA3|A Chain A, Structure Of A Sir2 Enzyme Bound To An Acetylated P53
Peptide
pdb|1S7G|A Chain A, Structural Basis For The Mechanism And Regulation Of Sir2
Enzymes
pdb|1S7G|B Chain B, Structural Basis For The Mechanism And Regulation Of Sir2
Enzymes
pdb|1S7G|C Chain C, Structural Basis For The Mechanism And Regulation Of Sir2
Enzymes
pdb|1S7G|D Chain D, Structural Basis For The Mechanism And Regulation Of Sir2
Enzymes
pdb|1S7G|E Chain E, Structural Basis For The Mechanism And Regulation Of Sir2
Enzymes
pdb|1YC2|A Chain A, Sir2af2-Nad-Adpribose-Nicotinamide
pdb|1YC2|B Chain B, Sir2af2-Nad-Adpribose-Nicotinamide
pdb|1YC2|C Chain C, Sir2af2-Nad-Adpribose-Nicotinamide
pdb|1YC2|D Chain D, Sir2af2-Nad-Adpribose-Nicotinamide
pdb|1YC2|E Chain E, Sir2af2-Nad-Adpribose-Nicotinamide
Length = 253
Score = 148 bits (373), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 96/283 (33%), Positives = 138/283 (48%), Gaps = 71/283 (25%)
Query: 119 IVLTGAGISTECGIPDYRSPNGAYS----------SGFK--PITHQQFVXXXXXXXXXXX 166
+V TGAGIS E GIP +R +G + SGFK P +F
Sbjct: 19 VVFTGAGISAESGIPTFRGEDGLWRKYDPEEVASISGFKRNPRAFWEFSMEMKDK----- 73
Query: 167 XXXXXXXXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNP-LELHGTVYTV 225
+ A+PNPAH+A+A LE+ G + +ITQN+D LH RAGS LELHG++ +
Sbjct: 74 ---------LFAEPNPAHYAIAELERMGIVKAVITQNIDMLHQRAGSRRVLELHGSMDKL 124
Query: 226 VCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDEKFW 285
CLDC ++ W+E +E + G
Sbjct: 125 DCLDCHETY--------------DWSEFVEDFNKGE------------------------ 146
Query: 286 EEDFHIPTCQKCNGV-LKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSLMTMSAYR 344
IP C+KC +KP VV FG+ +P+ +A+E AK CDAF+V+GSSL+ A
Sbjct: 147 -----IPRCRKCGSYYVKPRVVLFGEPLPQRTLFEAIEEAKHCDAFMVVGSSLVVYPAAE 201
Query: 345 LVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVLD 387
L A +AG+ + IVN T AD + +KI + GE+LP++++
Sbjct: 202 LPYIAKKAGAKMIIVNAEPTMADPIFDVKIIGKAGEVLPKIVE 244
>pdb|1YC5|A Chain A, Sir2-P53 Peptide-Nicotinamide
pdb|2H4F|A Chain A, Sir2-P53 Peptide-Nad+
pdb|2H4J|A Chain A, Sir2-Deacetylated Peptide (From Enzymatic Turnover In
Crystal)
pdb|2H2D|A Chain A, The Structural Basis For Sirtuin Substrate Affinity
pdb|2H2F|A Chain A, The Structural Basis For Sirtuin Substrate Affinity
pdb|2H2G|A Chain A, The Structural Basis Of Sirtuin Substrate Affinity
pdb|2H2H|A Chain A, The Structural Basis Of Sirtuin Substrate Specificity
pdb|2H2I|A Chain A, The Structural Basis Of Sirtuin Substrate Affinity
pdb|3D4B|A Chain A, Crystal Structure Of Sir2tm In Complex With Acetyl P53
Peptide And Dadme-Nad+
pdb|3D81|A Chain A, Sir2-S-Alkylamidate Complex Crystal Structure
pdb|3PDH|A Chain A, Structure Of Sir2tm Bound To A Propionylated Peptide
Length = 246
Score = 144 bits (362), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 93/282 (32%), Positives = 133/282 (47%), Gaps = 46/282 (16%)
Query: 112 INQFAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVXXXXXXXXXXXXXXXX 171
+N+ + LTGAGIST GIPD+R PNG Y + + F
Sbjct: 10 LNESRLTVTLTGAGISTPSGIPDFRGPNGIYKKYSQNVFDIDFFYSHPEEFYRFAKEGIF 69
Query: 172 XXXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNP-LELHGTVYTVVCLDC 230
+ A+PN AH LA LE+ G I+ +ITQN+DRLH RAGS +ELHG V C+ C
Sbjct: 70 P--MLQAKPNLAHVLLAKLEEKGLIEAVITQNIDRLHQRAGSKKVIELHGNVEEYYCVRC 127
Query: 231 GFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDEKFWEEDFH 290
+ +D +K L ES D
Sbjct: 128 EKKYT---VEDVIKKL--------ESSD-------------------------------- 144
Query: 291 IPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSLMTMSAYRLVRAAH 350
+P C CN +++P++VFFG+N+P+D +A+ + +VLGSSL+ A L
Sbjct: 145 VPLCDDCNSLIRPNIVFFGENLPQDALREAIGLSSRASLMIVLGSSLVVYPAAELPLITV 204
Query: 351 EAGSTIAIVNVGETRADDLTTLKISARLGEILPRVLDVGSLS 392
+G + IVN+GET DD+ TLK + + E RV++ G +S
Sbjct: 205 RSGGKLVIVNLGETPFDDIATLKYNMDVVEFARRVMEEGGIS 246
>pdb|2H4H|A Chain A, Sir2 H116y Mutant-P53 Peptide-Nad
Length = 246
Score = 142 bits (357), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 92/282 (32%), Positives = 133/282 (47%), Gaps = 46/282 (16%)
Query: 112 INQFAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVXXXXXXXXXXXXXXXX 171
+N+ + LTGAGIST GIPD+R PNG Y + + F
Sbjct: 10 LNESRLTVTLTGAGISTPSGIPDFRGPNGIYKKYSQNVFDIDFFYSHPEEFYRFAKEGIF 69
Query: 172 XXXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNP-LELHGTVYTVVCLDC 230
+ A+PN AH LA LE+ G I+ +ITQN+DRLH RAGS +EL+G V C+ C
Sbjct: 70 P--MLQAKPNLAHVLLAKLEEKGLIEAVITQNIDRLHQRAGSKKVIELYGNVEEYYCVRC 127
Query: 231 GFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDEKFWEEDFH 290
+ +D +K L ES D
Sbjct: 128 EKKYT---VEDVIKKL--------ESSD-------------------------------- 144
Query: 291 IPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSLMTMSAYRLVRAAH 350
+P C CN +++P++VFFG+N+P+D +A+ + +VLGSSL+ A L
Sbjct: 145 VPLCDDCNSLIRPNIVFFGENLPQDALREAIGLSSRASLMIVLGSSLVVYPAAELPLITV 204
Query: 351 EAGSTIAIVNVGETRADDLTTLKISARLGEILPRVLDVGSLS 392
+G + IVN+GET DD+ TLK + + E RV++ G +S
Sbjct: 205 RSGGKLVIVNLGETPFDDIATLKYNMDVVEFARRVMEEGGIS 246
>pdb|2H59|A Chain A, Sir2 H116a-Deacetylated P53 Peptide-3'-O-Acetyl Adp Ribose
pdb|2H59|B Chain B, Sir2 H116a-Deacetylated P53 Peptide-3'-O-Acetyl Adp Ribose
pdb|3JR3|A Chain A, Sir2 Bound To Acetylated Peptide
Length = 246
Score = 140 bits (353), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 92/282 (32%), Positives = 132/282 (46%), Gaps = 46/282 (16%)
Query: 112 INQFAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVXXXXXXXXXXXXXXXX 171
+N+ + LTGAGIST GIPD+R PNG Y + + F
Sbjct: 10 LNESRLTVTLTGAGISTPSGIPDFRGPNGIYKKYSQNVFDIDFFYSHPEEFYRFAKEGIF 69
Query: 172 XXXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNP-LELHGTVYTVVCLDC 230
+ A+PN AH LA LE+ G I+ +ITQN+DRLH RAGS +EL G V C+ C
Sbjct: 70 P--MLQAKPNLAHVLLAKLEEKGLIEAVITQNIDRLHQRAGSKKVIELAGNVEEYYCVRC 127
Query: 231 GFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDEKFWEEDFH 290
+ +D +K L ES D
Sbjct: 128 EKKYT---VEDVIKKL--------ESSD-------------------------------- 144
Query: 291 IPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSLMTMSAYRLVRAAH 350
+P C CN +++P++VFFG+N+P+D +A+ + +VLGSSL+ A L
Sbjct: 145 VPLCDDCNSLIRPNIVFFGENLPQDALREAIGLSSRASLMIVLGSSLVVYPAAELPLITV 204
Query: 351 EAGSTIAIVNVGETRADDLTTLKISARLGEILPRVLDVGSLS 392
+G + IVN+GET DD+ TLK + + E RV++ G +S
Sbjct: 205 RSGGKLVIVNLGETPFDDIATLKYNMDVVEFARRVMEEGGIS 246
>pdb|1ICI|A Chain A, Crystal Structure Of A Sir2 Homolog-Nad Complex
pdb|1ICI|B Chain B, Crystal Structure Of A Sir2 Homolog-Nad Complex
Length = 256
Score = 117 bits (293), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 80/279 (28%), Positives = 116/279 (41%), Gaps = 48/279 (17%)
Query: 105 DPPSIEDINQFAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVXXXXXXXXX 164
D ++ I + L+ LTGAG+S E GIP +R +G ++ ++P
Sbjct: 13 DEKLLKTIAESKYLVALTGAGVSAESGIPTFRGKDGLWNR-YRPEELANPQAFAKDPEKV 71
Query: 165 XXXXXXXXXXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGS-NPLELHGTVY 223
AQPN AH A A LE+ G + C+ITQNVD LH RAGS N + LHG++
Sbjct: 72 WKWYAWRMEKVFNAQPNKAHQAFAELERLGVLKCLITQNVDDLHERAGSRNVIHLHGSLR 131
Query: 224 TVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDEK 283
V C C SF +ES P
Sbjct: 132 VVRCTSCNNSF------------------EVESAPKIPP--------------------- 152
Query: 284 FWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSLMTMSAY 343
+P C KC +L+P VV+FG+ +P D D+AM + D +V G+S + A
Sbjct: 153 -------LPKCDKCGSLLRPGVVWFGEMLPPDVLDRAMREVERADVIIVAGTSAVVQPAA 205
Query: 344 RLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEIL 382
L + G I +N ET + + + GE++
Sbjct: 206 SLPLIVKQRGGAIIEINPDETPLTPIADYSLRGKAGEVM 244
>pdb|1M2G|A Chain A, Sir2 Homologue-Adp Ribose Complex
Length = 249
Score = 117 bits (293), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 80/279 (28%), Positives = 116/279 (41%), Gaps = 48/279 (17%)
Query: 105 DPPSIEDINQFAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVXXXXXXXXX 164
D ++ I + L+ LTGAG+S E GIP +R +G ++ ++P
Sbjct: 2 DEKLLKTIAESKYLVALTGAGVSAESGIPTFRGKDGLWNR-YRPEELANPQAFAKDPEKV 60
Query: 165 XXXXXXXXXXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGS-NPLELHGTVY 223
AQPN AH A A LE+ G + C+ITQNVD LH RAGS N + LHG++
Sbjct: 61 WKWYAWRMEKVFNAQPNKAHQAFAELERLGVLKCLITQNVDDLHERAGSRNVIHLHGSLR 120
Query: 224 TVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDEK 283
V C C SF +ES P
Sbjct: 121 VVRCTSCNNSF------------------EVESAPKIPP--------------------- 141
Query: 284 FWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSLMTMSAY 343
+P C KC +L+P VV+FG+ +P D D+AM + D +V G+S + A
Sbjct: 142 -------LPKCDKCGSLLRPGVVWFGEMLPPDVLDRAMREVERADVIIVAGTSAVVQPAA 194
Query: 344 RLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEIL 382
L + G I +N ET + + + GE++
Sbjct: 195 SLPLIVKQRGGAIIEINPDETPLTPIADYSLRGKAGEVM 233
>pdb|1M2H|A Chain A, Sir2 Homologue S24a Mutant-adp Ribose Complex
Length = 249
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 79/279 (28%), Positives = 116/279 (41%), Gaps = 48/279 (17%)
Query: 105 DPPSIEDINQFAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVXXXXXXXXX 164
D ++ I + L+ LTGAG++ E GIP +R +G ++ ++P
Sbjct: 2 DEKLLKTIAESKYLVALTGAGVAAESGIPTFRGKDGLWNR-YRPEELANPQAFAKDPEKV 60
Query: 165 XXXXXXXXXXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGS-NPLELHGTVY 223
AQPN AH A A LE+ G + C+ITQNVD LH RAGS N + LHG++
Sbjct: 61 WKWYAWRMEKVFNAQPNKAHQAFAELERLGVLKCLITQNVDDLHERAGSRNVIHLHGSLR 120
Query: 224 TVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDEK 283
V C C SF +ES P
Sbjct: 121 VVRCTSCNNSF------------------EVESAPKIPP--------------------- 141
Query: 284 FWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSLMTMSAY 343
+P C KC +L+P VV+FG+ +P D D+AM + D +V G+S + A
Sbjct: 142 -------LPKCDKCGSLLRPGVVWFGEMLPPDVLDRAMREVERADVIIVAGTSAVVQPAA 194
Query: 344 RLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEIL 382
L + G I +N ET + + + GE++
Sbjct: 195 SLPLIVKQRGGAIIEINPDETPLTPIADYSLRGKAGEVM 233
>pdb|1M2J|A Chain A, Sir2 Homologue H80n Mutant-Adp Ribose Complex
Length = 249
Score = 114 bits (286), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 79/279 (28%), Positives = 116/279 (41%), Gaps = 48/279 (17%)
Query: 105 DPPSIEDINQFAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVXXXXXXXXX 164
D ++ I + L+ LTGAG+S E GIP +R +G ++ ++P
Sbjct: 2 DEKLLKTIAESKYLVALTGAGVSAESGIPTFRGKDGLWNR-YRPEELANPQAFAKDPEKV 60
Query: 165 XXXXXXXXXXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGS-NPLELHGTVY 223
AQPN A+ A A LE+ G + C+ITQNVD LH RAGS N + LHG++
Sbjct: 61 WKWYAWRMEKVFNAQPNKANQAFAELERLGVLKCLITQNVDDLHERAGSRNVIHLHGSLR 120
Query: 224 TVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDEK 283
V C C SF +ES P
Sbjct: 121 VVRCTSCNNSF------------------EVESAPKIPP--------------------- 141
Query: 284 FWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSLMTMSAY 343
+P C KC +L+P VV+FG+ +P D D+AM + D +V G+S + A
Sbjct: 142 -------LPKCDKCGSLLRPGVVWFGEMLPPDVLDRAMREVERADVIIVAGTSAVVQPAA 194
Query: 344 RLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEIL 382
L + G I +N ET + + + GE++
Sbjct: 195 SLPLIVKQRGGAIIEINPDETPLTPIADYSLRGKAGEVM 233
>pdb|1M2K|A Chain A, Sir2 Homologue F159a Mutant-Adp Ribose Complex
Length = 249
Score = 114 bits (284), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 79/279 (28%), Positives = 115/279 (41%), Gaps = 48/279 (17%)
Query: 105 DPPSIEDINQFAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVXXXXXXXXX 164
D ++ I + L+ LTGAG+S E GIP +R +G ++ ++P
Sbjct: 2 DEKLLKTIAESKYLVALTGAGVSAESGIPTFRGKDGLWNR-YRPEELANPQAFAKDPEKV 60
Query: 165 XXXXXXXXXXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGS-NPLELHGTVY 223
AQPN AH A A LE+ G + C+ITQNVD LH RAGS N + LHG++
Sbjct: 61 WKWYAWRMEKVFNAQPNKAHQAFAELERLGVLKCLITQNVDDLHERAGSRNVIHLHGSLR 120
Query: 224 TVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDEK 283
V C C SF +ES P
Sbjct: 121 VVRCTSCNNSF------------------EVESAPKIPP--------------------- 141
Query: 284 FWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSLMTMSAY 343
+P C KC +L+P VV+ G+ +P D D+AM + D +V G+S + A
Sbjct: 142 -------LPKCDKCGSLLRPGVVWAGEMLPPDVLDRAMREVERADVIIVAGTSAVVQPAA 194
Query: 344 RLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEIL 382
L + G I +N ET + + + GE++
Sbjct: 195 SLPLIVKQRGGAIIEINPDETPLTPIADYSLRGKAGEVM 233
>pdb|1M2N|A Chain A, Sir2 Homologues (D102gF159AR170A) MUTANT-2'-O-Acetyl Adp
Ribose Complex
pdb|1M2N|B Chain B, Sir2 Homologues (D102gF159AR170A) MUTANT-2'-O-Acetyl Adp
Ribose Complex
Length = 249
Score = 112 bits (280), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 79/279 (28%), Positives = 114/279 (40%), Gaps = 48/279 (17%)
Query: 105 DPPSIEDINQFAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVXXXXXXXXX 164
D ++ I + L+ LTGAG+S E GIP +R +G ++ ++P
Sbjct: 2 DEKLLKTIAESKYLVALTGAGVSAESGIPTFRGKDGLWNR-YRPEELANPQAFAKDPEKV 60
Query: 165 XXXXXXXXXXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGS-NPLELHGTVY 223
AQPN AH A A LE+ G + C+ITQNVD LH RAGS N + LHG++
Sbjct: 61 WKWYAWRMEKVFNAQPNKAHQAFAELERLGVLKCLITQNVDGLHERAGSRNVIHLHGSLR 120
Query: 224 TVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDEK 283
V C C SF +ES P
Sbjct: 121 VVRCTSCNNSF------------------EVESAPKIPP--------------------- 141
Query: 284 FWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSLMTMSAY 343
+P C KC +L+P VV+ G+ +P D D AM + D +V G+S + A
Sbjct: 142 -------LPKCDKCGSLLRPGVVWAGEMLPPDVLDAAMREVERADVIIVAGTSAVVQPAA 194
Query: 344 RLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEIL 382
L + G I +N ET + + + GE++
Sbjct: 195 SLPLIVKQRGGAIIEINPDETPLTPIADYSLRGKAGEVM 233
>pdb|3PKI|A Chain A, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|B Chain B, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|C Chain C, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|D Chain D, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|E Chain E, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|F Chain F, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKJ|A Chain A, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
pdb|3PKJ|B Chain B, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
pdb|3PKJ|C Chain C, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
pdb|3PKJ|D Chain D, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
pdb|3PKJ|E Chain E, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
pdb|3PKJ|F Chain F, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
Length = 355
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 75/290 (25%), Positives = 124/290 (42%), Gaps = 61/290 (21%)
Query: 112 INQFAKLIVLTGAGISTECGIPDYRSPNGAYS---SGFKPITHQQFVXXXXXXXXXXXXX 168
+ Q + ++ TGAGIST GIPD+R P+G ++ G P +F
Sbjct: 41 VWQSSSVVFHTGAGISTASGIPDFRGPHGVWTMEERGLAP----KF-------------- 82
Query: 169 XXXXXXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAG---SNPLELHGTVYTV 225
F +A+P H AL LE+ G + +++QNVD LH R+G ELHG ++
Sbjct: 83 ---DTTFESARPTQTHMALVQLERVGLLRFLVSQNVDGLHVRSGFPRDKLAELHGNMFVE 139
Query: 226 VCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDEKFW 285
C C + RD V + K + ++ ++ G++
Sbjct: 140 ECAKCKTQYVRDTV---VGTMGLKATGRLCTV-------AKARGLR-------------- 175
Query: 286 EEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSLMTMSAYRL 345
C G L+ ++ + D++P A EA++ D + LG+SL + L
Sbjct: 176 ----------ACRGELRDTILDWEDSLPDRDLALADEASRNADLSITLGTSLQIRPSGNL 225
Query: 346 VRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVLDVGSLSIPA 395
A G + IVN+ T+ D L+I + E++ R+++ L IPA
Sbjct: 226 PLATKRRGGRLVIVNLQPTKHDRHADLRIHGYVDEVMTRLMEHLGLEIPA 275
>pdb|3K35|A Chain A, Crystal Structure Of Human Sirt6
pdb|3K35|B Chain B, Crystal Structure Of Human Sirt6
pdb|3K35|C Chain C, Crystal Structure Of Human Sirt6
pdb|3K35|D Chain D, Crystal Structure Of Human Sirt6
pdb|3K35|E Chain E, Crystal Structure Of Human Sirt6
pdb|3K35|F Chain F, Crystal Structure Of Human Sirt6
Length = 318
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 74/290 (25%), Positives = 121/290 (41%), Gaps = 61/290 (21%)
Query: 112 INQFAKLIVLTGAGISTECGIPDYRSPNGAYS---SGFKPITHQQFVXXXXXXXXXXXXX 168
+ Q + ++ TGAGIST GIPD+R P+G ++ G P
Sbjct: 41 VWQSSSVVFHTGAGISTASGIPDFRGPHGVWTMEERGLAP-------------------- 80
Query: 169 XXXXXXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAG---SNPLELHGTVYTV 225
F +A+P H AL LE+ G + +++QNVD LH R+G ELHG ++
Sbjct: 81 -KFDTTFESARPTQTHMALVQLERVGLLRFLVSQNVDGLHVRSGFPRDKLAELHGNMFVE 139
Query: 226 VCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDEKFW 285
C C + RD V + K + ++ ++ G++
Sbjct: 140 ECAKCKTQYVRDTV---VGTMGLKATGRLCTV-------AKARGLR-------------- 175
Query: 286 EEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSLMTMSAYRL 345
C G L+ ++ + D++P A EA++ D + LG+SL + L
Sbjct: 176 ----------ACRGELRDTILDWEDSLPDRDLALADEASRNADLSITLGTSLQIRPSGNL 225
Query: 346 VRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVLDVGSLSIPA 395
A G + IVN+ T+ D L+I + E++ R++ L IPA
Sbjct: 226 PLATKRRGGRLVIVNLQPTKHDRHADLRIHGYVDEVMTRLMKHLGLEIPA 275
>pdb|3U31|A Chain A, Plasmodium Falciparum Sir2a Preferentially Hydrolyzes
Medium And Long Chain Fatty Acyl Lysine
pdb|3U3D|A Chain A, Plasmodium Falciparum Sir2a Preferentially Hydrolyzes
Medium And Long Chain Fatty Acyl Lysine
Length = 290
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/292 (23%), Positives = 120/292 (41%), Gaps = 48/292 (16%)
Query: 103 DADPPSIEDINQFAK----LIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVXXX 158
D ++E++ + K ++ LTG+G S E IP +R + + S + P +
Sbjct: 29 DTQSITLEELAKIIKKCKHVVALTGSGTSAESNIPSFRGSSNSIWSKYDPRIYGTIWGFW 88
Query: 159 XXXXXXXXXXXXXXXXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNP-LE 217
+ + N H AL++LE G + ++TQNVD LH +G+ +
Sbjct: 89 KYPEKIWEVIRDISSDY-EIEINNGHVALSTLESLGYLKSVVTQNVDGLHEASGNTKVIS 147
Query: 218 LHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQRPDGD 277
LHG V+ VC C +++ LN + S M Q P
Sbjct: 148 LHGNVFEAVCCTC----------NKIVKLNKIMLQ------------KTSHFMHQLP--- 182
Query: 278 IEIDEKFWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSL 337
P C C G+ KP+++ FG+ V D +A E +CD LV+G+S
Sbjct: 183 --------------PECP-CGGIFKPNIILFGEVVSSDLLKEAEEEIAKCDLLLVIGTSS 227
Query: 338 MTMSAYRLVRAAHEAGSTIAIVNVGETR-ADDLTTLKISARLGEILPRVLDV 388
+A L A + I +N+ +T + ++ + A+ E L +V ++
Sbjct: 228 TVSTATNLCHFACKKKKKIVEINISKTYITNKMSDYHVCAKFSE-LTKVANI 278
>pdb|3RIG|A Chain A, Sirt5 Is An Nad-Dependent Protein Lysine Demalonylase And
Desuccinylase
pdb|3RIG|B Chain B, Sirt5 Is An Nad-Dependent Protein Lysine Demalonylase And
Desuccinylase
pdb|3RIY|A Chain A, Sirt5 Is An Nad-Dependent Protein Lysine Demalonylase And
Desuccinylase
pdb|3RIY|B Chain B, Sirt5 Is An Nad-Dependent Protein Lysine Demalonylase And
Desuccinylase
pdb|4F4U|A Chain A, The Bicyclic Intermediate Structure Provides Insights Into
The Desuccinylation Mechanism Of Sirt5
pdb|4F4U|B Chain B, The Bicyclic Intermediate Structure Provides Insights Into
The Desuccinylation Mechanism Of Sirt5
pdb|4F56|A Chain A, The Bicyclic Intermediate Structure Provides Insights Into
The Desuccinylation Mechanism Of Sirt5
pdb|4F56|B Chain B, The Bicyclic Intermediate Structure Provides Insights Into
The Desuccinylation Mechanism Of Sirt5
Length = 273
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 72/290 (24%), Positives = 120/290 (41%), Gaps = 38/290 (13%)
Query: 108 SIEDINQF----AKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVXXXXXXXX 163
S+ D +F +++++GAG+S E G+P +R G Y ++ +
Sbjct: 10 SMADFRKFFAKAKHIVIISGAGVSAESGVPTFRG-AGGYWRKWQAQDLATPLAFAHNPSR 68
Query: 164 XXXXXXXXXXXFMAAQPNPAHFALASLE----KAGRIDCMITQNVDRLHHRAGS-NPLEL 218
+ +PN H A+A E K GR +ITQN+D LH +AG+ N LE+
Sbjct: 69 VWEFYHYRREVMGSKEPNAGHRAIAECETRLGKQGRRVVVITQNIDELHRKAGTKNLLEI 128
Query: 219 HGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQRPDGDI 278
HG+++ C CG + ++ + P A+ PG+ D I
Sbjct: 129 HGSLFKTRCTSCGV-----VAENYKSPICP----ALSGKGAPEPGTQ---------DASI 170
Query: 279 EIDEKFWEEDFHIPTCQK--CNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSS 336
+++ +P C++ C G+L+P VV+FG+N+ ++ CD LV+G+S
Sbjct: 171 PVEK--------LPRCEEAGCGGLLRPHVVWFGENLDPAILEEVDRELAHCDLCLVVGTS 222
Query: 337 LMTMSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVL 386
+ A G +A N T A + G LP L
Sbjct: 223 SVVYPAAMFAPQVAARGVPVAEFNTETTPATNRFRFHFQGPCGTTLPEAL 272
>pdb|4HDA|A Chain A, Crystal Structure Of Human Sirt5 In Complex With
Fluor-de-lys Peptide And Resveratrol
pdb|4HDA|B Chain B, Crystal Structure Of Human Sirt5 In Complex With
Fluor-de-lys Peptide And Resveratrol
Length = 275
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 72/290 (24%), Positives = 120/290 (41%), Gaps = 38/290 (13%)
Query: 108 SIEDINQF----AKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVXXXXXXXX 163
S+ D +F +++++GAG+S E G+P +R G Y ++ +
Sbjct: 12 SMADFRKFFAKAKHIVIISGAGVSAESGVPTFRG-AGGYWRKWQAQDLATPLAFAHNPSR 70
Query: 164 XXXXXXXXXXXFMAAQPNPAHFALASLE----KAGRIDCMITQNVDRLHHRAGS-NPLEL 218
+ +PN H A+A E K GR +ITQN+D LH +AG+ N LE+
Sbjct: 71 VWEFYHYRREVMGSKEPNAGHRAIAECETRLGKQGRRVVVITQNIDELHRKAGTKNLLEI 130
Query: 219 HGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQRPDGDI 278
HG+++ C CG + ++ + P A+ PG+ D I
Sbjct: 131 HGSLFKTRCTSCGV-----VAENYKSPICP----ALSGKGAPEPGTQ---------DASI 172
Query: 279 EIDEKFWEEDFHIPTCQK--CNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSS 336
+++ +P C++ C G+L+P VV+FG+N+ ++ CD LV+G+S
Sbjct: 173 PVEK--------LPRCEEAGCGGLLRPHVVWFGENLDPAILEEVDRELAHCDLCLVVGTS 224
Query: 337 LMTMSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVL 386
+ A G +A N T A + G LP L
Sbjct: 225 SVVYPAAMFAPQVAARGVPVAEFNTETTPATNRFRFHFQGPCGTTLPEAL 274
>pdb|2NYR|A Chain A, Crystal Structure Of Human Sirtuin Homolog 5 In Complex
With Suramin
pdb|2NYR|B Chain B, Crystal Structure Of Human Sirtuin Homolog 5 In Complex
With Suramin
Length = 271
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 72/290 (24%), Positives = 120/290 (41%), Gaps = 38/290 (13%)
Query: 108 SIEDINQF----AKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVXXXXXXXX 163
S+ D +F +++++GAG+S E G+P +R G Y ++ +
Sbjct: 8 SMADFRKFFAKAKHIVIISGAGVSAESGVPTFRG-AGGYWRKWQAQDLATPLAFAHNPSR 66
Query: 164 XXXXXXXXXXXFMAAQPNPAHFALASLE----KAGRIDCMITQNVDRLHHRAGS-NPLEL 218
+ +PN H A+A E K GR +ITQN+D LH +AG+ N LE+
Sbjct: 67 VWEFYHYRREVMGSKEPNAGHRAIAECETRLGKQGRRVVVITQNIDELHRKAGTKNLLEI 126
Query: 219 HGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQRPDGDI 278
HG+++ C CG + ++ + P A+ PG+ D I
Sbjct: 127 HGSLFKTRCTSCGV-----VAENYKSPICP----ALSGKGAPEPGTQ---------DASI 168
Query: 279 EIDEKFWEEDFHIPTCQK--CNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSS 336
+++ +P C++ C G+L+P VV+FG+N+ ++ CD LV+G+S
Sbjct: 169 PVEK--------LPRCEEAGCGGLLRPHVVWFGENLDPAILEEVDRELAHCDLCLVVGTS 220
Query: 337 LMTMSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVL 386
+ A G +A N T A + G LP L
Sbjct: 221 SVVYPAAMFAPQVAARGVPVAEFNTETTPATNRFRFHFQGPCGTTLPEAL 270
>pdb|4G1C|A Chain A, Human Sirt5 Bound To Succ-Idh2 And Carba-Nad
pdb|4G1C|B Chain B, Human Sirt5 Bound To Succ-Idh2 And Carba-Nad
Length = 267
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 72/290 (24%), Positives = 120/290 (41%), Gaps = 38/290 (13%)
Query: 108 SIEDINQF----AKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVXXXXXXXX 163
S+ D +F +++++GAG+S E G+P +R G Y ++ +
Sbjct: 4 SMADFRKFFAKAKHIVIISGAGVSAESGVPTFRG-AGGYWRKWQAQDLATPLAFAHNPSR 62
Query: 164 XXXXXXXXXXXFMAAQPNPAHFALASLE----KAGRIDCMITQNVDRLHHRAGS-NPLEL 218
+ +PN H A+A E K GR +ITQN+D LH +AG+ N LE+
Sbjct: 63 VWEFYHYRREVMGSKEPNAGHRAIAECETRLGKQGRRVVVITQNIDELHRKAGTKNLLEI 122
Query: 219 HGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQRPDGDI 278
HG+++ C CG + ++ + P A+ PG+ D I
Sbjct: 123 HGSLFKTRCTSCGV-----VAENYKSPICP----ALSGKGAPEPGTQ---------DASI 164
Query: 279 EIDEKFWEEDFHIPTCQK--CNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSS 336
+++ +P C++ C G+L+P VV+FG+N+ ++ CD LV+G+S
Sbjct: 165 PVEK--------LPRCEEAGCGGLLRPHVVWFGENLDPAILEEVDRELAHCDLCLVVGTS 216
Query: 337 LMTMSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVL 386
+ A G +A N T A + G LP L
Sbjct: 217 SVVYPAAMFAPQVAARGVPVAEFNTETTPATNRFRFHFQGPCGTTLPEAL 266
>pdb|2B4Y|A Chain A, Crystal Structure Of Human Sirtuin Homolog 5
pdb|2B4Y|B Chain B, Crystal Structure Of Human Sirtuin Homolog 5
pdb|2B4Y|C Chain C, Crystal Structure Of Human Sirtuin Homolog 5
pdb|2B4Y|D Chain D, Crystal Structure Of Human Sirtuin Homolog 5
Length = 271
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 72/282 (25%), Positives = 118/282 (41%), Gaps = 37/282 (13%)
Query: 115 FAK---LIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVXXXXXXXXXXXXXXXX 171
FAK +++++GAG+S E G+P +R G Y ++ +
Sbjct: 16 FAKAKHIVIISGAGVSAESGVPTFRG-AGGYWRKWQAQDLATPLAFAHNPSRVWEFYHYR 74
Query: 172 XXXFMAAQPNPAHFALASLE----KAGRIDCMITQNVDRLHHRAGS-NPLELHGTVYTVV 226
+ +PN H A+A E K GR +ITQN+D LH +AG+ N LE+HG+++
Sbjct: 75 REVXGSKEPNAGHRAIAECETRLGKQGRRVVVITQNIDELHRKAGTKNLLEIHGSLFKTR 134
Query: 227 CLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDEKFWE 286
C CG + ++ + P A+ PG+ D I +++
Sbjct: 135 CTSCGV-----VAENYKSPICP----ALSGKGAPEPGTQ---------DASIPVEK---- 172
Query: 287 EDFHIPTCQK--CNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSLMTMSAYR 344
+P C++ C G+L+P VV+FG+N+ ++ CD LV+G+S + A
Sbjct: 173 ----LPRCEEAGCGGLLRPHVVWFGENLDPAILEEVDRELAHCDLCLVVGTSSVVYPAAX 228
Query: 345 LVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVL 386
G +A N T A + G LP L
Sbjct: 229 FAPQVAARGVPVAEFNTETTPATNRFRFHFQGPCGTTLPEAL 270
>pdb|3JWP|A Chain A, Crystal Structure Of Plasmodium Falciparum Sir2a
(Pf13_0152) In Complex With Amp
Length = 265
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/292 (22%), Positives = 117/292 (40%), Gaps = 48/292 (16%)
Query: 103 DADPPSIEDINQFAK----LIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVXXX 158
D ++E++ + K ++ LTG+G S E IP +R + + S + P +
Sbjct: 4 DTQSITLEELAKIIKKCKHVVALTGSGTSAESNIPSFRGSSNSIWSKYDPRIYGTIWGFW 63
Query: 159 XXXXXXXXXXXXXXXXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNP-LE 217
+ + N H AL++LE G + ++TQNVD LH +G+ +
Sbjct: 64 KYPEKIWEVIRDISSDY-EIEINNGHVALSTLESLGYLKSVVTQNVDGLHEASGNTKVIS 122
Query: 218 LHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQRPDGD 277
LHG V+ VC C +++ LN + + P
Sbjct: 123 LHGNVFEAVCCTC----------NKIVKLNKIXLQKTSHFXHQLP--------------- 157
Query: 278 IEIDEKFWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSL 337
P C C G+ KP+++ FG+ V D +A E +CD LV+G+S
Sbjct: 158 --------------PECP-CGGIFKPNIILFGEVVSSDLLKEAEEEIAKCDLLLVIGTSS 202
Query: 338 MTMSAYRLVRAAHEAGSTIAIVNVGETR-ADDLTTLKISARLGEILPRVLDV 388
+A L A + I +N+ +T + + + A+ E L +V ++
Sbjct: 203 TVSTATNLCHFACKKKKKIVEINISKTYITNKXSDYHVCAKFSE-LTKVANI 253
>pdb|4IAO|A Chain A, Crystal Structure Of Sir2 C543s Mutant In Complex With Sid
Domain Of Sir4
pdb|4IAO|B Chain B, Crystal Structure Of Sir2 C543s Mutant In Complex With Sid
Domain Of Sir4
Length = 492
Score = 74.7 bits (182), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 101/248 (40%), Gaps = 40/248 (16%)
Query: 109 IEDINQFAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQ-----QFVXXXXXXXX 163
I+ ++ K++VLTGAG+ST GIPD+RS G YS I H Q V
Sbjct: 178 IQKLHTARKILVLTGAGVSTSLGIPDFRSSEGFYSK----IKHLGLDDPQDVFNYNIFMH 233
Query: 164 XXXXXXXXXXXFMAAQP--NPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNP---LEL 218
+ + +P H + L+ G++ TQN+D L AG + ++
Sbjct: 234 DPSVFYNIANMVLPPEKIYSPLHSFIKMLQMKGKLLRNYTQNIDNLESYAGISTDKLVQC 293
Query: 219 HGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAI--ESLDYGSPGSDRSFG------- 269
HG+ T C+ C ++ + ++++ L + +Y G + G
Sbjct: 294 HGSFATATCVTCHWNLPGERIFNKIRNLELPLCPYCYKKRREYFPEGYNNKVGVAASQGS 353
Query: 270 MKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDA 329
M +RP P GVLKPD+ FFG+ +P E ECD
Sbjct: 354 MSERP-----------------PYILNSYGVLKPDITFFGEALPNKFHKSIREDILECDL 396
Query: 330 FLVLGSSL 337
+ +G+SL
Sbjct: 397 LICIGTSL 404
>pdb|2HJH|A Chain A, Crystal Structure Of The Sir2 Deacetylase
pdb|2HJH|B Chain B, Crystal Structure Of The Sir2 Deacetylase
Length = 354
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 103/250 (41%), Gaps = 26/250 (10%)
Query: 109 IEDINQFAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITH-----QQFVXXXXXXXX 163
I+ ++ K++VLTGAG+ST GIPD+RS G YS I H Q V
Sbjct: 40 IQKLHTARKILVLTGAGVSTSLGIPDFRSSEGFYSK----IKHLGLDDPQDVFNYNIFXH 95
Query: 164 XXXXXXXXXXXFMAAQP--NPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNP---LEL 218
+ + +P H + L+ G++ TQN+D L AG + ++
Sbjct: 96 DPSVFYNIANXVLPPEKIYSPLHSFIKXLQXKGKLLRNYTQNIDNLESYAGISTDKLVQC 155
Query: 219 HGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAI--ESLDYGSPGSDRSFGMKQRPDG 276
HG+ T C+ C ++ + ++++ L + +Y G + G+
Sbjct: 156 HGSFATATCVTCHWNLPGERIFNKIRNLELPLCPYCYKKRREYFPEGYNNKVGVAASQGS 215
Query: 277 DIEIDEKFWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSS 336
E P GVLKPD+ FFG+ +P E ECD + +G+S
Sbjct: 216 XSE----------RPPYILNSYGVLKPDITFFGEALPNKFHKSIREDILECDLLICIGTS 265
Query: 337 LMTMSAYRLV 346
L +V
Sbjct: 266 LKVAPVSEIV 275
>pdb|4FVT|A Chain A, Human Sirt3 Bound To Ac-Acs Peptide And Carba-Nad
Length = 274
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 87/229 (37%), Gaps = 53/229 (23%)
Query: 117 KLIVLTGAGISTECGIPDYRSPNGAYSSGFK----PITHQQFVXXXXXXXXXXXXXXXXX 172
+++V+ GAGIST GIPD+RSP S + P F
Sbjct: 18 RVVVMVGAGISTPSGIPDFRSPGSGLYSNLQQYDLPYPEAIFELPFFFHNPKPFFTLAKE 77
Query: 173 XXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAG---SNPLELHGTVYTVVCLD 229
+PN H+ L L G + + TQN+D L +G S +E HGT + C
Sbjct: 78 LYPGNYKPNVTHYFLRLLHDKGLLLRLYTQNIDGLERVSGIPASKLVEAHGTFASATCTV 137
Query: 230 CGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSD-RSFGMKQRPDGDIEIDEKFWEED 288
C F PG D R+ M R
Sbjct: 138 CQRPF---------------------------PGEDIRADVMADR--------------- 155
Query: 289 FHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSL 337
+P C C GV+KPD+VFFG+ +P+ ++ D L+LG+SL
Sbjct: 156 --VPRCPVCTGVVKPDIVFFGEPLPQRFLLHVVDFPM-ADLLLILGTSL 201
>pdb|4HD8|A Chain A, Crystal Structure Of Human Sirt3 In Complex With
Fluor-de-lys Peptide And Piceatannol
Length = 284
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 93/244 (38%), Gaps = 59/244 (24%)
Query: 108 SIEDINQFAK------LIVLTGAGISTECGIPDYRSPNGAYSSGFK----PITHQQFVXX 157
S++D+ + + ++V+ GAGIST GIPD+RSP S + P F
Sbjct: 9 SLQDVAELIRARACQRVVVMVGAGISTPSGIPDFRSPGSGLYSNLQQYDLPYPEAIFELP 68
Query: 158 XXXXXXXXXXXXXXXXXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAG---SN 214
+PN H+ L L G + + TQN+D L +G S
Sbjct: 69 FFFHNPKPFFTLAKELYPGNYKPNVTHYFLRLLHDKGLLLRLYTQNIDGLERVSGIPASK 128
Query: 215 PLELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSD-RSFGMKQR 273
+E HGT + C C F PG D R+ M R
Sbjct: 129 LVEAHGTFASATCTVCQRPF---------------------------PGEDIRADVMADR 161
Query: 274 PDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVL 333
+P C C GV+KPD+VFFG+ +P+ ++ D L+L
Sbjct: 162 -----------------VPRCPVCTGVVKPDIVFFGEPLPQRFLLHVVDFPM-ADLLLIL 203
Query: 334 GSSL 337
G+SL
Sbjct: 204 GTSL 207
>pdb|3GLR|A Chain A, Crystal Structure Of Human Sirt3 With Acetyl-Lysine Acecs2
Peptide
pdb|3GLS|A Chain A, Crystal Structure Of Human Sirt3
pdb|3GLS|B Chain B, Crystal Structure Of Human Sirt3
pdb|3GLS|C Chain C, Crystal Structure Of Human Sirt3
pdb|3GLS|D Chain D, Crystal Structure Of Human Sirt3
pdb|3GLS|E Chain E, Crystal Structure Of Human Sirt3
pdb|3GLS|F Chain F, Crystal Structure Of Human Sirt3
pdb|3GLT|A Chain A, Crystal Structure Of Human Sirt3 With Adpr Bound To The
Acecs2 Peptide Containing A Thioacetyl Lysine
pdb|3GLU|A Chain A, Crystal Structure Of Human Sirt3 With Acecs2 Peptide
Length = 285
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 87/229 (37%), Gaps = 53/229 (23%)
Query: 117 KLIVLTGAGISTECGIPDYRSPNGAYSSGFK----PITHQQFVXXXXXXXXXXXXXXXXX 172
+++V+ GAGIST GIPD+RSP S + P F
Sbjct: 25 RVVVMVGAGISTPSGIPDFRSPGSGLYSNLQQYDLPYPEAIFELPFFFHNPKPFFTLAKE 84
Query: 173 XXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAG---SNPLELHGTVYTVVCLD 229
+PN H+ L L G + + TQN+D L +G S +E HGT + C
Sbjct: 85 LYPGNYKPNVTHYFLRLLHDKGLLLRLYTQNIDGLERVSGIPASKLVEAHGTFASATCTV 144
Query: 230 CGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSD-RSFGMKQRPDGDIEIDEKFWEED 288
C F PG D R+ M R
Sbjct: 145 CQRPF---------------------------PGEDIRADVMADR--------------- 162
Query: 289 FHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSL 337
+P C C GV+KPD+VFFG+ +P+ ++ D L+LG+SL
Sbjct: 163 --VPRCPVCTGVVKPDIVFFGEPLPQRFLLHVVDFPM-ADLLLILGTSL 208
>pdb|4I5I|A Chain A, Crystal Structure Of The Sirt1 Catalytic Domain Bound To
Nad And An Ex527 Analog
pdb|4I5I|B Chain B, Crystal Structure Of The Sirt1 Catalytic Domain Bound To
Nad And An Ex527 Analog
Length = 287
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 69/246 (28%), Positives = 105/246 (42%), Gaps = 60/246 (24%)
Query: 108 SIED----INQFAKLIVLTGAGISTECGIPDYRSPNGAYSS---GFKPITHQQFVXXXXX 160
+IED + + K+IVLTGAG+S CGIPD+RS +G Y+ F + Q +
Sbjct: 5 TIEDAVKLLQECKKIIVLTGAGVSVSCGIPDFRSRDGIYARLAVDFPDLPDPQAMFDIEY 64
Query: 161 XXXXXXXXXXXXXXFMAA--QPNPAHFALASLEKAGRIDCMITQNVDRLHHRAG-SNPLE 217
QP+ H +A +K G++ TQN+D L AG ++
Sbjct: 65 FRKDPRPFFKFAKEIYPGQFQPSLCHKFIALSDKEGKLLRNYTQNIDTLEQVAGIQRIIQ 124
Query: 218 LHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQRPDGD 277
HG+ T CL C + EA+ GD
Sbjct: 125 CHGSFATASCLICKYKV---------------DCEAVR--------------------GD 149
Query: 278 IEIDEKFWEEDFHIPTCQKCN-----GVLKPDVVFFGDNVPKDRADKAMEAAK-ECDAFL 331
I F + +P C +C ++KP++VFFG+N+P ++ +AM+ K E D +
Sbjct: 150 I-----FNQV---VPRCPRCPADEPLAIMKPEIVFFGENLP-EQFHRAMKYDKDEVDLLI 200
Query: 332 VLGSSL 337
V+GSSL
Sbjct: 201 VIGSSL 206
>pdb|1J8F|A Chain A, Human Sirt2 Histone Deacetylase
Length = 323
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 63/240 (26%), Positives = 93/240 (38%), Gaps = 48/240 (20%)
Query: 117 KLIVLTGAGISTECGIPDYRSPN-GAYSSGFK---PITHQQFVXXXXXXXXXXXXXXXXX 172
++I L GAGIST GIPD+RSP+ G Y + K P F
Sbjct: 45 RVICLVGAGISTSAGIPDFRSPSTGLYDNLEKYHLPYPEAIFEISYFKKHPEPFFALAKE 104
Query: 173 XXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAG---SNPLELHGTVYTVVCLD 229
+P H+ + L+ G + TQN+D L AG + +E HGT YT C+
Sbjct: 105 LYPGQFKPTICHYFMRLLKDKGLLLRCYTQNIDTLERIAGLEQEDLVEAHGTFYTSHCVS 164
Query: 230 CGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDEKFWEEDF 289
CR + P S MK++ ++
Sbjct: 165 AS---CRHEY----------------------PLS----WMKEKIFSEV----------- 184
Query: 290 HIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSLMTMSAYRLVRAA 349
P C+ C ++KPD+VFFG+++P + D LV+G+SL L+ A
Sbjct: 185 -TPKCEDCQSLVKPDIVFFGESLPARFFSCMQSDFLKVDLLLVMGTSLQVQPFASLISKA 243
>pdb|1J8F|C Chain C, Human Sirt2 Histone Deacetylase
pdb|1J8F|B Chain B, Human Sirt2 Histone Deacetylase
Length = 323
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 63/240 (26%), Positives = 93/240 (38%), Gaps = 48/240 (20%)
Query: 117 KLIVLTGAGISTECGIPDYRSPN-GAYSSGFK---PITHQQFVXXXXXXXXXXXXXXXXX 172
++I L GAGIST GIPD+RSP+ G Y + K P F
Sbjct: 45 RVICLVGAGISTSAGIPDFRSPSTGLYDNLEKYHLPYPEAIFEISYFKKHPEPFFALAKE 104
Query: 173 XXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAG---SNPLELHGTVYTVVCLD 229
+P H+ + L+ G + TQN+D L AG + +E HGT YT C+
Sbjct: 105 LYPGQFKPTICHYFMRLLKDKGLLLRCYTQNIDTLERIAGLEQEDLVEAHGTFYTSHCVS 164
Query: 230 CGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDEKFWEEDF 289
CR + P S MK++ ++
Sbjct: 165 AS---CRHEY----------------------PLS----WMKEKIFSEV----------- 184
Query: 290 HIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSLMTMSAYRLVRAA 349
P C+ C ++KPD+VFFG+++P + D LV+G+SL L+ A
Sbjct: 185 -TPKCEDCQSLVKPDIVFFGESLPARFFSCMQSDFLKVDLLLVMGTSLQVQPFASLISKA 243
>pdb|1S5P|A Chain A, Structure And Substrate Binding Properties Of Cobb, A Sir2
Homolog Protein Deacetylase From Eschericia Coli
Length = 235
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 71/287 (24%), Positives = 110/287 (38%), Gaps = 77/287 (26%)
Query: 117 KLIVLTGAGISTECGIPDYRSPNGAYSS----------GFK--PITHQQFVXXXXXXXXX 164
+++VLTGAGIS E GI +R+ +G + GF P Q F
Sbjct: 3 RVLVLTGAGISAESGIRTFRAADGLWEEHRVEDVATPEGFDRDPELVQAFYNARRRQLQQ 62
Query: 165 XXXXXXXXXXFMAAQPNPAHFALASLEKA-GRIDCMITQNVDRLHHRAG-SNPLELHGTV 222
QPN AH ALA L+ A G ++TQN+D LH RAG +N + +HG +
Sbjct: 63 PEI-----------QPNAAHLALAKLQDALGDRFLLVTQNIDNLHERAGNTNVIHMHGEL 111
Query: 223 YTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDE 282
V C G + LD+ GD+ ++
Sbjct: 112 LKVRCSQSG-----------------------QVLDW---------------TGDVTPED 133
Query: 283 KFWEEDFHIPTCQKCN--GVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSLMTM 340
K C C L+P VV+FG+ +P D+ A D F+ +G+S
Sbjct: 134 K----------CHCCQFPAPLRPHVVWFGE-MPLG-MDEIYMALSMADIFIAIGTSGHVY 181
Query: 341 SAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVLD 387
A V A G+ +N+ ++ + K +++P ++
Sbjct: 182 PAAGFVHEAKLHGAHTVELNLEPSQVGNEFAEKYYGPASQVVPEFVE 228
>pdb|2OD7|A Chain A, Crystal Structure Of Yhst2 Bound To The Intermediate
Analogue Adp-Hpd, And And Aceylated H4 Peptide
pdb|2OD9|A Chain A, Structural Basis For Nicotinamide Inhibition And Base
Exchange In Sir2 Enzymes
pdb|2QQF|A Chain A, Hst2 Bound To Adp-Hpd And Acetylated Histone H4
pdb|2QQG|A Chain A, Hst2 Bound To Adp-hpd, Acetyllated Histone H4 And
Nicotinamide
Length = 308
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 78/208 (37%), Gaps = 47/208 (22%)
Query: 113 NQFAKLIVLTGAGISTECGIPDYRSP-NGAYSSGFK---PITHQQFVXXXXXXXXXXXXX 168
N AK+I + GAGIST CGIPD+RSP G Y + + P F
Sbjct: 36 NPNAKVIFMVGAGISTSCGIPDFRSPGTGLYHNLARLKLPYPEAVFDVDFFQSDPLPFYT 95
Query: 169 XXXXXXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNP---LELHGTVYTV 225
+P+ H+ L + + + TQN+D L +AG +E HG+
Sbjct: 96 LAKELYPGNFRPSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHC 155
Query: 226 VCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDEKFW 285
C+ CG + +F+ + + + P D
Sbjct: 156 HCIGCGKVYPPQVFKSK---------------------------LAEHPIKDFV------ 182
Query: 286 EEDFHIPTCQKCNGVLKPDVVFFGDNVP 313
C C ++KP +VFFG+++P
Sbjct: 183 -------KCDVCGELVKPAIVFFGEDLP 203
>pdb|1SZC|A Chain A, Structural Basis For Nicotinamide Cleavage And Adp-Ribose
Transfer By Nad+-Dependent Sir2 HistonePROTEIN
DEACETYLASES
pdb|1SZD|A Chain A, Structural Basis For Nicotinamide Cleavage And Adp-Ribose
Transfer By Nad+-Dependent Sir2 HistonePROTEIN
DEACETYLASES
Length = 297
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 78/208 (37%), Gaps = 47/208 (22%)
Query: 113 NQFAKLIVLTGAGISTECGIPDYRSP-NGAYSSGFK---PITHQQFVXXXXXXXXXXXXX 168
N AK+I + GAGIST CGIPD+RSP G Y + + P F
Sbjct: 25 NPNAKVIFMVGAGISTSCGIPDFRSPGTGLYHNLARLKLPYPEAVFDVDFFQSDPLPFYT 84
Query: 169 XXXXXXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNP---LELHGTVYTV 225
+P+ H+ L + + + TQN+D L +AG +E HG+
Sbjct: 85 LAKELYPGNFRPSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHC 144
Query: 226 VCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDEKFW 285
C+ CG + +F+ + + + P D
Sbjct: 145 HCIGCGKVYPPQVFKSK---------------------------LAEHPIKDFV------ 171
Query: 286 EEDFHIPTCQKCNGVLKPDVVFFGDNVP 313
C C ++KP +VFFG+++P
Sbjct: 172 -------KCDVCGELVKPAIVFFGEDLP 192
>pdb|1Q1A|A Chain A, Structure Of The Yeast Hst2 Protein Deacetylase In Ternary
Complex With 2'-O-Acetyl Adp Ribose And Histone Peptide
Length = 289
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 78/208 (37%), Gaps = 47/208 (22%)
Query: 113 NQFAKLIVLTGAGISTECGIPDYRSP-NGAYSSGFK---PITHQQFVXXXXXXXXXXXXX 168
N AK+I + GAGIST CGIPD+RSP G Y + + P F
Sbjct: 18 NPNAKVIFMVGAGISTSCGIPDFRSPGTGLYHNLARLKLPYPEAVFDVDFFQSDPLPFYT 77
Query: 169 XXXXXXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNP---LELHGTVYTV 225
+P+ H+ L + + + TQN+D L +AG +E HG+
Sbjct: 78 LAKELYPGNFRPSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHC 137
Query: 226 VCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDEKFW 285
C+ CG + +F+ + + + P D
Sbjct: 138 HCIGCGKVYPPQVFKSK---------------------------LAEHPIKDFV------ 164
Query: 286 EEDFHIPTCQKCNGVLKPDVVFFGDNVP 313
C C ++KP +VFFG+++P
Sbjct: 165 -------KCDVCGELVKPAIVFFGEDLP 185
>pdb|1Q14|A Chain A, Structure And Autoregulation Of The Yeast Hst2 Homolog Of
Sir2
Length = 361
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 78/208 (37%), Gaps = 47/208 (22%)
Query: 113 NQFAKLIVLTGAGISTECGIPDYRSP-NGAYSSGFK---PITHQQFVXXXXXXXXXXXXX 168
N AK+I + GAGIST CGIPD+RSP G Y + + P F
Sbjct: 26 NPNAKVIFMVGAGISTSCGIPDFRSPGTGLYHNLARLKLPYPEAVFDVDFFQSDPLPFYT 85
Query: 169 XXXXXXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNP---LELHGTVYTV 225
+P+ H+ L + + + TQN+D L +AG +E HG+
Sbjct: 86 LAKELYPGNFRPSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHC 145
Query: 226 VCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDEKFW 285
C+ CG + +F+ + + + P D
Sbjct: 146 HCIGCGKVYPPQVFKSK---------------------------LAEHPIKD-------- 170
Query: 286 EEDFHIPTCQKCNGVLKPDVVFFGDNVP 313
C C ++KP +VFFG+++P
Sbjct: 171 -----FVKCDVCGELVKPAIVFFGEDLP 193
>pdb|1Q17|A Chain A, Structure Of The Yeast Hst2 Protein Deacetylase In Ternary
Complex With 2'-O-Acetyl Adp Ribose And Histone Peptide
pdb|1Q17|B Chain B, Structure Of The Yeast Hst2 Protein Deacetylase In Ternary
Complex With 2'-O-Acetyl Adp Ribose And Histone Peptide
pdb|1Q17|C Chain C, Structure Of The Yeast Hst2 Protein Deacetylase In Ternary
Complex With 2'-O-Acetyl Adp Ribose And Histone Peptide
Length = 300
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 78/208 (37%), Gaps = 47/208 (22%)
Query: 113 NQFAKLIVLTGAGISTECGIPDYRSP-NGAYSSGFK---PITHQQFVXXXXXXXXXXXXX 168
N AK+I + GAGIST CGIPD+RSP G Y + + P F
Sbjct: 28 NPNAKVIFMVGAGISTSCGIPDFRSPGTGLYHNLARLKLPYPEAVFDVDFFQSDPLPFYT 87
Query: 169 XXXXXXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNP---LELHGTVYTV 225
+P+ H+ L + + + TQN+D L +AG +E HG+
Sbjct: 88 LAKELYPGNFRPSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHC 147
Query: 226 VCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDEKFW 285
C+ CG + +F+ + + + P D
Sbjct: 148 HCIGCGKVYPPQVFKSK---------------------------LAEHPIKDFV------ 174
Query: 286 EEDFHIPTCQKCNGVLKPDVVFFGDNVP 313
C C ++KP +VFFG+++P
Sbjct: 175 -------KCDVCGELVKPAIVFFGEDLP 195
>pdb|2OD2|A Chain A, Crystal Structure Of Yhst2 I117f Mutant Bound To
Carba-Nad+ And An Acetylated H4 Peptide
Length = 308
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 77/208 (37%), Gaps = 47/208 (22%)
Query: 113 NQFAKLIVLTGAGISTECGIPDYRSP-NGAYSSGFK---PITHQQFVXXXXXXXXXXXXX 168
N AK+I + GAGIST CGIPD+RSP G Y + + P F
Sbjct: 36 NPNAKVIFMVGAGISTSCGIPDFRSPGTGLYHNLARLKLPYPEAVFDVDFFQSDPLPFYT 95
Query: 169 XXXXXXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNP---LELHGTVYTV 225
+P+ H+ L + + + TQN D L +AG +E HG+
Sbjct: 96 LAKELYPGNFRPSKFHYLLKLFQDKDVLKRVYTQNFDTLERQAGVKDDLIIEAHGSFAHC 155
Query: 226 VCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDEKFW 285
C+ CG + +F+ + + + P D
Sbjct: 156 HCIGCGKVYPPQVFKSK---------------------------LAEHPIKDFV------ 182
Query: 286 EEDFHIPTCQKCNGVLKPDVVFFGDNVP 313
C C ++KP +VFFG+++P
Sbjct: 183 -------KCDVCGELVKPAIVFFGEDLP 203
>pdb|1K7Y|A Chain A, E. Coli Meth C-Terminal Fragment (649-1227)
pdb|1K98|A Chain A, Adomet Complex Of Meth C-Terminal Fragment
Length = 577
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 9/83 (10%)
Query: 296 KCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHE---A 352
+CN ++V G VP A+K + AKE +A L+ S L+T S +V A E
Sbjct: 121 QCNNY---EIVDLGVMVP---AEKILRTAKEVNADLIGLSGLITPSLDEMVNVAKEMERQ 174
Query: 353 GSTIAIVNVGETRADDLTTLKIS 375
G TI ++ G T + T +KI
Sbjct: 175 GFTIPLLIGGATTSKAHTAVKIE 197
>pdb|3BUL|A Chain A, E. Coli I690cG743C METH C-Terminal Fragment (649-1227)
pdb|3IV9|A Chain A, Structure Of The B12-Dependent Methionine Synthase (Meth)
C-Teminal Half In A "his-On" Conformation
pdb|3IVA|A Chain A, Structure Of The B12-Dependent Methionine Synthase (Meth)
C-Teminal Half With Adohcy Bound
Length = 579
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 9/83 (10%)
Query: 296 KCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHE---A 352
+CN ++V G VP A+K + AKE +A L+ S L+T S +V A E
Sbjct: 123 QCNNY---EIVDLGVMVP---AEKILRTAKEVNADLIGLSGLITPSLDEMVNVAKEMERQ 176
Query: 353 GSTIAIVNVGETRADDLTTLKIS 375
G TI ++ G T + T +KI
Sbjct: 177 GFTIPLLIGGATTSKAHTAVKIE 199
>pdb|1BMT|A Chain A, How A Protein Binds B12: A 3.O Angstrom X-Ray Structure Of
The B12-Binding Domains Of Methionine Synthase
pdb|1BMT|B Chain B, How A Protein Binds B12: A 3.O Angstrom X-Ray Structure Of
The B12-Binding Domains Of Methionine Synthase
Length = 246
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 9/83 (10%)
Query: 296 KCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEA--- 352
+CN ++V G VP A+K + AKE +A L+ S L+T S +V A E
Sbjct: 121 QCNNY---EIVDLGVMVP---AEKILRTAKEVNADLIGLSGLITPSLDEMVNVAKEMERQ 174
Query: 353 GSTIAIVNVGETRADDLTTLKIS 375
G TI ++ G T + T +KI
Sbjct: 175 GFTIPLLIGGATTSKAHTAVKIE 197
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,251,389
Number of Sequences: 62578
Number of extensions: 439516
Number of successful extensions: 983
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 872
Number of HSP's gapped (non-prelim): 86
length of query: 396
length of database: 14,973,337
effective HSP length: 101
effective length of query: 295
effective length of database: 8,652,959
effective search space: 2552622905
effective search space used: 2552622905
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)