Query 016025
Match_columns 396
No_of_seqs 221 out of 1170
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 03:06:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016025.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016025hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2683 Sirtuin 4 and related 100.0 3E-73 6.6E-78 525.1 21.8 290 81-385 6-305 (305)
2 cd01409 SIRT4 SIRT4: Eukaryoti 100.0 3E-66 6.4E-71 499.7 26.2 258 109-382 2-260 (260)
3 PRK05333 NAD-dependent deacety 100.0 8.2E-64 1.8E-68 488.7 28.5 274 102-392 2-280 (285)
4 PRK14138 NAD-dependent deacety 100.0 5.3E-62 1.2E-66 466.2 26.4 239 108-392 4-244 (244)
5 PTZ00409 Sir2 (Silent Informat 100.0 2.2E-60 4.7E-65 460.7 24.8 237 107-389 20-262 (271)
6 COG0846 SIR2 NAD-dependent pro 100.0 1.1E-60 2.4E-65 456.1 21.4 237 108-390 5-246 (250)
7 cd01413 SIR2_Af2 SIR2_Af2: Arc 100.0 1.6E-59 3.5E-64 443.2 22.8 218 112-377 1-222 (222)
8 cd01408 SIRT1 SIRT1: Eukaryoti 100.0 2.1E-59 4.5E-64 446.0 23.4 221 116-385 1-235 (235)
9 PRK00481 NAD-dependent deacety 100.0 7.1E-59 1.5E-63 444.0 25.9 232 107-389 5-240 (242)
10 PTZ00408 NAD-dependent deacety 100.0 4.2E-58 9E-63 438.5 24.4 224 113-388 2-234 (242)
11 cd01410 SIRT7 SIRT7: Eukaryoti 100.0 6.6E-58 1.4E-62 427.7 21.6 203 116-377 1-206 (206)
12 cd01411 SIR2H SIR2H: Uncharact 100.0 1.1E-57 2.3E-62 431.7 22.1 218 109-382 2-225 (225)
13 cd01412 SIRT5_Af1_CobB SIRT5_A 100.0 2.7E-57 5.8E-62 428.2 23.7 220 116-386 1-224 (224)
14 cd01407 SIR2-fam SIR2 family o 100.0 1.3E-56 2.7E-61 422.3 23.9 213 116-377 1-218 (218)
15 PTZ00410 NAD-dependent SIR2; P 100.0 1.3E-53 2.8E-58 423.2 24.3 237 108-392 20-325 (349)
16 cd00296 SIR2 SIR2 superfamily 100.0 2.1E-49 4.5E-54 372.4 23.0 212 116-376 1-221 (222)
17 PF02146 SIR2: Sir2 family; I 100.0 3.3E-49 7.1E-54 360.6 12.9 173 123-341 1-178 (178)
18 KOG2684 Sirtuin 5 and related 100.0 8.2E-47 1.8E-51 374.0 17.9 239 107-395 80-347 (412)
19 KOG1905 Class IV sirtuins (SIR 100.0 3.1E-47 6.7E-52 362.3 11.0 233 107-395 47-285 (353)
20 KOG2682 NAD-dependent histone 100.0 1.4E-44 3E-49 335.0 13.2 234 109-391 28-280 (314)
21 cd01406 SIR2-like Sir2-like: P 98.8 3.7E-08 8E-13 94.0 11.0 96 116-211 1-112 (242)
22 PF00205 TPP_enzyme_M: Thiamin 95.7 0.012 2.7E-07 50.9 4.0 67 318-385 69-137 (137)
23 PRK07979 acetolactate synthase 93.3 0.11 2.5E-06 55.7 5.2 70 319-390 265-336 (574)
24 PRK08979 acetolactate synthase 93.3 0.1 2.2E-06 56.1 4.9 70 319-390 265-336 (572)
25 PRK07418 acetolactate synthase 93.1 0.12 2.6E-06 56.1 5.2 70 319-390 283-354 (616)
26 PRK06882 acetolactate synthase 93.1 0.13 2.8E-06 55.3 5.2 69 319-389 265-335 (574)
27 PRK05858 hypothetical protein; 92.8 0.25 5.4E-06 52.8 6.8 79 308-390 244-324 (542)
28 PRK09107 acetolactate synthase 92.7 0.16 3.4E-06 55.0 5.2 69 319-389 273-343 (595)
29 PRK06466 acetolactate synthase 92.7 0.16 3.4E-06 54.7 5.1 69 319-389 265-335 (574)
30 TIGR01504 glyox_carbo_lig glyo 92.6 0.13 2.8E-06 55.6 4.5 68 320-389 263-332 (588)
31 PRK08322 acetolactate synthase 92.6 0.19 4.2E-06 53.5 5.7 68 320-390 256-325 (547)
32 CHL00099 ilvB acetohydroxyacid 92.6 0.17 3.7E-06 54.6 5.3 69 320-390 277-347 (585)
33 PRK07789 acetolactate synthase 92.4 0.17 3.7E-06 54.9 5.0 70 319-390 290-361 (612)
34 PRK08527 acetolactate synthase 92.3 0.19 4.1E-06 54.0 5.2 69 320-390 263-333 (563)
35 PRK07524 hypothetical protein; 92.2 0.16 3.5E-06 54.0 4.6 72 318-390 255-329 (535)
36 PLN02470 acetolactate synthase 92.2 0.2 4.4E-06 54.0 5.4 68 320-389 273-342 (585)
37 COG0028 IlvB Thiamine pyrophos 92.1 0.22 4.8E-06 53.5 5.4 69 319-390 259-329 (550)
38 PRK06725 acetolactate synthase 92.1 0.2 4.4E-06 53.9 5.2 69 320-390 274-344 (570)
39 PRK07282 acetolactate synthase 91.9 0.23 5E-06 53.4 5.3 69 319-389 269-339 (566)
40 TIGR00118 acolac_lg acetolacta 91.7 0.23 4.9E-06 53.2 5.0 69 319-389 260-330 (558)
41 PRK06048 acetolactate synthase 91.6 0.26 5.6E-06 52.9 5.3 69 320-390 267-337 (561)
42 TIGR03254 oxalate_oxc oxalyl-C 91.6 0.35 7.6E-06 51.7 6.2 82 307-389 246-329 (554)
43 TIGR00173 menD 2-succinyl-5-en 91.5 0.51 1.1E-05 49.0 7.2 65 321-389 270-336 (432)
44 PRK11269 glyoxylate carboligas 91.4 0.27 5.8E-06 53.1 5.1 68 320-389 264-333 (591)
45 PRK06154 hypothetical protein; 91.1 0.34 7.3E-06 52.2 5.5 68 319-390 273-342 (565)
46 PRK06112 acetolactate synthase 91.1 0.26 5.6E-06 53.0 4.6 69 319-389 277-346 (578)
47 TIGR02418 acolac_catab acetola 91.1 0.37 8.1E-06 51.3 5.8 67 320-389 256-324 (539)
48 PRK08155 acetolactate synthase 91.0 0.38 8.2E-06 51.6 5.8 68 320-389 271-340 (564)
49 PRK08978 acetolactate synthase 91.0 0.28 6.1E-06 52.3 4.7 69 319-389 255-325 (548)
50 PRK08611 pyruvate oxidase; Pro 90.9 0.45 9.9E-06 51.2 6.3 64 320-390 261-326 (576)
51 PRK11032 hypothetical protein; 90.9 0.18 3.9E-06 45.7 2.7 10 290-299 141-150 (160)
52 PRK06456 acetolactate synthase 90.8 0.35 7.5E-06 52.0 5.3 70 320-390 267-338 (572)
53 PRK06276 acetolactate synthase 90.5 0.33 7.2E-06 52.3 4.9 69 319-389 262-332 (586)
54 PRK08273 thiamine pyrophosphat 90.5 0.44 9.6E-06 51.6 5.8 67 319-390 265-333 (597)
55 PRK07525 sulfoacetaldehyde ace 90.5 0.28 6.1E-06 52.9 4.3 71 320-390 260-333 (588)
56 PRK06965 acetolactate synthase 90.4 0.42 9.2E-06 51.6 5.6 70 319-389 280-351 (587)
57 PRK06546 pyruvate dehydrogenas 90.4 0.57 1.2E-05 50.6 6.5 63 320-390 259-323 (578)
58 PF07295 DUF1451: Protein of u 90.3 0.19 4.2E-06 44.9 2.3 13 222-234 110-122 (146)
59 PRK08266 hypothetical protein; 90.2 0.26 5.6E-06 52.5 3.7 68 320-390 257-325 (542)
60 PRK09259 putative oxalyl-CoA d 90.0 0.58 1.3E-05 50.3 6.2 81 308-389 254-336 (569)
61 PRK08327 acetolactate synthase 90.0 0.39 8.4E-06 51.7 4.8 67 320-390 273-344 (569)
62 PRK07710 acetolactate synthase 89.8 0.47 1E-05 51.0 5.3 69 319-389 274-344 (571)
63 PRK08199 thiamine pyrophosphat 89.6 0.44 9.6E-06 51.0 4.9 71 319-389 263-336 (557)
64 TIGR03457 sulphoacet_xsc sulfo 89.2 0.4 8.7E-06 51.6 4.2 70 319-390 255-329 (579)
65 PRK09124 pyruvate dehydrogenas 88.2 0.94 2E-05 48.7 6.2 64 320-390 259-324 (574)
66 PRK08617 acetolactate synthase 87.9 0.78 1.7E-05 49.0 5.3 67 320-389 262-330 (552)
67 cd02766 MopB_3 The MopB_3 CD i 87.9 0.91 2E-05 48.1 5.8 55 321-375 152-208 (501)
68 TIGR02720 pyruv_oxi_spxB pyruv 87.5 0.9 2E-05 49.0 5.5 67 320-390 258-326 (575)
69 smart00834 CxxC_CXXC_SSSS Puta 87.4 0.4 8.6E-06 32.7 1.8 13 223-235 4-16 (41)
70 PRK07064 hypothetical protein; 87.1 0.88 1.9E-05 48.5 5.1 69 319-390 257-327 (544)
71 cd02750 MopB_Nitrate-R-NarG-li 86.1 1.5 3.3E-05 45.8 6.2 56 322-377 166-223 (461)
72 PLN02573 pyruvate decarboxylas 85.7 0.65 1.4E-05 50.1 3.3 68 319-389 284-351 (578)
73 cd02765 MopB_4 The MopB_4 CD i 85.1 1.7 3.8E-05 46.7 6.2 56 322-377 155-212 (567)
74 COG3383 Uncharacterized anaero 84.7 1.2 2.6E-05 49.3 4.6 66 321-386 415-483 (978)
75 KOG1185 Thiamine pyrophosphate 84.6 0.76 1.6E-05 48.4 3.0 80 309-390 259-342 (571)
76 cd02759 MopB_Acetylene-hydrata 84.1 2.1 4.6E-05 44.8 6.2 56 322-377 156-214 (477)
77 cd02768 MopB_NADH-Q-OR-NuoG2 M 83.1 4.5 9.8E-05 40.8 7.9 56 322-379 144-202 (386)
78 PRK06457 pyruvate dehydrogenas 82.9 2.5 5.5E-05 45.2 6.3 60 319-385 252-313 (549)
79 PRK07092 benzoylformate decarb 82.9 1.2 2.5E-05 47.5 3.7 71 319-390 265-336 (530)
80 PRK11916 electron transfer fla 82.7 2.8 6E-05 42.1 6.0 60 326-390 251-311 (312)
81 cd02753 MopB_Formate-Dh-H Form 82.7 2.6 5.7E-05 44.4 6.2 54 322-375 152-207 (512)
82 PF09723 Zn-ribbon_8: Zinc rib 82.6 1.2 2.5E-05 31.2 2.4 14 222-235 3-16 (42)
83 PRK03363 fixB putative electro 82.3 3 6.6E-05 41.8 6.1 60 326-390 252-312 (313)
84 cd02752 MopB_Formate-Dh-Na-lik 81.6 3 6.5E-05 45.9 6.3 56 322-377 165-223 (649)
85 cd00368 Molybdopterin-Binding 81.4 3.4 7.4E-05 41.2 6.2 54 322-375 152-207 (374)
86 TIGR03479 DMSO_red_II_alp DMSO 81.2 3.5 7.5E-05 47.1 6.9 57 321-377 219-277 (912)
87 PRK07449 2-succinyl-5-enolpyru 81.2 4.2 9.1E-05 43.6 7.2 62 320-384 280-343 (568)
88 cd02767 MopB_ydeP The MopB_yde 80.9 4.1 9E-05 44.1 7.0 43 322-364 159-203 (574)
89 TIGR03393 indolpyr_decarb indo 80.8 0.85 1.8E-05 48.7 1.7 68 319-389 265-334 (539)
90 cd02755 MopB_Thiosulfate-R-lik 80.7 2.3 5E-05 44.4 4.8 55 323-377 153-210 (454)
91 PLN00022 electron transfer fla 80.6 3 6.5E-05 42.6 5.5 60 326-390 293-353 (356)
92 TIGR01553 formate-DH-alph form 80.4 3.5 7.6E-05 47.7 6.5 56 322-377 217-274 (1009)
93 TIGR02098 MJ0042_CXXC MJ0042 f 80.1 0.98 2.1E-05 30.5 1.3 12 224-235 2-13 (38)
94 cd02762 MopB_1 The MopB_1 CD i 79.7 5.1 0.00011 42.7 7.2 56 322-377 152-215 (539)
95 cd02754 MopB_Nitrate-R-NapA-li 79.6 3.6 7.9E-05 44.0 6.1 56 322-377 153-212 (565)
96 PF09845 DUF2072: Zn-ribbon co 79.5 0.89 1.9E-05 39.8 1.1 11 225-235 2-12 (131)
97 cd02770 MopB_DmsA-EC This CD ( 78.3 7.9 0.00017 42.1 8.2 56 322-377 162-223 (617)
98 TIGR03844 cysteate_syn cysteat 78.2 5.4 0.00012 41.3 6.6 13 223-235 1-13 (398)
99 PRK09939 putative oxidoreducta 77.4 5.5 0.00012 44.7 6.8 43 322-364 204-248 (759)
100 cd02763 MopB_2 The MopB_2 CD i 77.1 5 0.00011 44.5 6.3 56 322-377 151-208 (679)
101 TIGR01591 Fdh-alpha formate de 77.0 4.3 9.4E-05 44.3 5.8 54 322-375 151-206 (671)
102 PF05191 ADK_lid: Adenylate ki 76.8 2.1 4.7E-05 29.1 2.1 13 224-236 1-13 (36)
103 PRK06260 threonine synthase; V 75.9 1.8 4E-05 44.4 2.4 13 223-235 2-14 (397)
104 TIGR00509 bisC_fam molybdopter 75.8 5.2 0.00011 44.7 6.1 52 324-375 165-227 (770)
105 PRK12496 hypothetical protein; 75.6 1.7 3.7E-05 39.4 1.9 12 224-235 127-138 (164)
106 COG2025 FixB Electron transfer 75.2 6.5 0.00014 39.5 6.0 60 326-390 251-311 (313)
107 PRK00398 rpoP DNA-directed RNA 75.1 2.2 4.8E-05 30.2 2.0 12 224-235 3-14 (46)
108 cd05014 SIS_Kpsf KpsF-like pro 75.1 7.1 0.00015 32.7 5.5 55 323-377 44-99 (128)
109 PF13717 zinc_ribbon_4: zinc-r 75.0 2 4.2E-05 29.2 1.6 13 224-236 2-14 (36)
110 PRK13937 phosphoheptose isomer 75.0 7.8 0.00017 35.6 6.1 55 323-377 103-158 (188)
111 COG3962 Acetolactate synthase 74.9 4.9 0.00011 42.4 5.1 70 319-389 288-357 (617)
112 cd02769 MopB_DMSOR-BSOR-TMAOR 74.8 9.1 0.0002 41.6 7.5 52 323-374 167-230 (609)
113 TIGR02605 CxxC_CxxC_SSSS putat 74.5 2.2 4.7E-05 30.8 1.8 14 222-235 3-16 (52)
114 PF00384 Molybdopterin: Molybd 74.4 4.3 9.3E-05 41.3 4.6 54 323-376 108-164 (432)
115 cd02760 MopB_Phenylacetyl-CoA- 73.9 6.6 0.00014 44.0 6.3 57 321-377 168-227 (760)
116 PRK06266 transcription initiat 73.8 2.1 4.5E-05 39.5 1.9 12 292-303 137-148 (178)
117 COG3364 Zn-ribbon containing p 73.6 1.4 3.1E-05 36.9 0.7 11 225-235 3-13 (112)
118 PRK15488 thiosulfate reductase 73.1 10 0.00022 42.2 7.6 55 323-377 193-251 (759)
119 TIGR01701 Fdhalpha-like oxidor 73.0 8.9 0.00019 42.9 7.0 44 322-365 194-239 (743)
120 PRK05580 primosome assembly pr 72.0 9 0.0002 42.4 6.7 9 292-300 422-430 (679)
121 PF13719 zinc_ribbon_5: zinc-r 71.9 2.4 5.2E-05 28.8 1.4 13 224-236 2-14 (37)
122 TIGR03394 indol_phenyl_DC indo 71.8 2.3 4.9E-05 45.5 1.9 68 319-389 261-330 (535)
123 cd02068 radical_SAM_B12_BD B12 71.5 23 0.0005 29.9 7.8 65 325-389 38-110 (127)
124 TIGR01973 NuoG NADH-quinone ox 71.1 8.4 0.00018 41.8 6.2 56 321-376 357-415 (603)
125 TIGR00373 conserved hypothetic 70.9 2.4 5.1E-05 38.3 1.6 21 216-236 101-121 (158)
126 COG1379 PHP family phosphoeste 70.9 0.97 2.1E-05 45.3 -1.0 19 218-236 240-258 (403)
127 cd02772 MopB_NDH-1_NuoG2 MopB_ 70.9 12 0.00026 38.2 7.0 44 322-365 148-193 (414)
128 cd02758 MopB_Tetrathionate-Ra 70.7 11 0.00024 42.1 7.1 56 322-377 207-271 (735)
129 PRK13938 phosphoheptose isomer 70.6 11 0.00024 35.2 6.0 55 322-376 109-164 (196)
130 PRK07591 threonine synthase; V 70.0 2.5 5.5E-05 43.9 1.8 14 222-235 16-29 (421)
131 cd05006 SIS_GmhA Phosphoheptos 69.3 14 0.00029 33.3 6.2 55 323-377 98-153 (177)
132 cd00729 rubredoxin_SM Rubredox 69.1 4.7 0.0001 26.9 2.3 11 224-234 2-12 (34)
133 TIGR03127 RuMP_HxlB 6-phospho 68.6 8.3 0.00018 34.7 4.7 53 323-375 69-122 (179)
134 PRK07860 NADH dehydrogenase su 68.5 9.4 0.0002 43.0 6.0 55 321-375 371-429 (797)
135 cd05008 SIS_GlmS_GlmD_1 SIS (S 67.8 11 0.00024 31.4 5.0 56 323-378 43-99 (126)
136 cd02773 MopB_Res-Cmplx1_Nad11 67.8 16 0.00036 36.8 7.1 50 322-371 141-193 (375)
137 TIGR03471 HpnJ hopanoid biosyn 67.6 23 0.00051 37.1 8.4 70 320-389 62-140 (472)
138 cd00350 rubredoxin_like Rubred 67.5 5 0.00011 26.5 2.2 11 225-235 2-12 (33)
139 TIGR00595 priA primosomal prot 67.5 14 0.00031 39.4 6.8 8 292-299 254-261 (505)
140 PF04016 DUF364: Domain of unk 67.1 10 0.00022 33.7 4.8 72 318-390 54-133 (147)
141 cd05710 SIS_1 A subgroup of th 67.0 12 0.00026 31.6 5.0 57 323-379 44-101 (120)
142 TIGR00354 polC DNA polymerase, 66.4 3.5 7.7E-05 46.7 2.1 35 291-328 1028-1062(1095)
143 cd02751 MopB_DMSOR-like The Mo 66.3 16 0.00034 39.7 7.0 52 326-377 169-231 (609)
144 COG1737 RpiR Transcriptional r 65.9 22 0.00048 34.8 7.4 73 301-376 155-228 (281)
145 cd02757 MopB_Arsenate-R This C 65.8 12 0.00027 39.8 6.0 55 323-377 159-217 (523)
146 PF14353 CpXC: CpXC protein 65.4 1.8 3.9E-05 37.3 -0.4 13 225-237 2-14 (128)
147 TIGR00441 gmhA phosphoheptose 65.2 30 0.00065 30.6 7.5 52 324-375 77-129 (154)
148 PRK14990 anaerobic dimethyl su 65.0 25 0.00055 39.5 8.6 57 321-377 226-289 (814)
149 PRK00564 hypA hydrogenase nick 64.8 3.8 8.2E-05 35.1 1.6 19 216-234 63-81 (117)
150 smart00531 TFIIE Transcription 64.7 3 6.5E-05 37.0 0.9 13 224-236 99-111 (147)
151 PRK06450 threonine synthase; V 64.4 4.3 9.2E-05 41.0 2.1 12 224-235 3-14 (338)
152 COG1439 Predicted nucleic acid 64.1 4.4 9.5E-05 37.4 1.9 12 224-235 139-150 (177)
153 cd05013 SIS_RpiR RpiR-like pro 63.2 24 0.00052 29.3 6.2 56 323-378 57-113 (139)
154 PRK00414 gmhA phosphoheptose i 63.1 25 0.00055 32.4 6.8 54 324-377 109-163 (192)
155 PRK14714 DNA polymerase II lar 62.5 8.1 0.00018 45.2 4.0 34 292-328 1270-1303(1337)
156 PRK04940 hypothetical protein; 62.2 18 0.00039 33.5 5.6 61 302-365 26-94 (180)
157 COG1198 PriA Primosomal protei 61.8 34 0.00073 38.4 8.5 15 293-310 477-491 (730)
158 TIGR02166 dmsA_ynfE anaerobic 61.8 15 0.00033 41.0 6.1 56 322-377 210-272 (797)
159 PRK04023 DNA polymerase II lar 61.5 4.9 0.00011 45.9 2.0 35 291-328 1053-1087(1121)
160 TIGR00515 accD acetyl-CoA carb 61.3 23 0.0005 35.1 6.5 21 340-360 142-162 (285)
161 CHL00174 accD acetyl-CoA carbo 61.2 31 0.00068 34.4 7.4 23 340-362 155-177 (296)
162 PRK09129 NADH dehydrogenase su 61.1 23 0.00049 39.7 7.2 46 321-366 365-412 (776)
163 TIGR02026 BchE magnesium-proto 60.9 26 0.00057 37.2 7.3 63 326-388 63-134 (497)
164 COG3357 Predicted transcriptio 60.8 4 8.6E-05 33.6 0.9 12 224-235 58-69 (97)
165 PF13580 SIS_2: SIS domain; PD 59.8 23 0.0005 30.7 5.7 36 324-359 101-136 (138)
166 PF09538 FYDLN_acid: Protein o 58.9 6.5 0.00014 33.4 1.9 13 292-304 27-39 (108)
167 COG1867 TRM1 N2,N2-dimethylgua 57.4 67 0.0015 33.1 9.1 90 292-387 258-375 (380)
168 PF13240 zinc_ribbon_2: zinc-r 56.7 5.6 0.00012 24.3 0.8 8 293-300 15-22 (23)
169 COG0549 ArcC Carbamate kinase 56.7 11 0.00023 37.6 3.2 81 98-215 160-246 (312)
170 smart00659 RPOLCX RNA polymera 56.6 8.8 0.00019 27.3 2.0 10 225-234 3-12 (44)
171 PRK03681 hypA hydrogenase nick 56.6 8 0.00017 33.0 2.1 20 216-235 62-81 (114)
172 COG0777 AccD Acetyl-CoA carbox 56.4 44 0.00095 33.1 7.3 13 352-364 194-206 (294)
173 TIGR02300 FYDLN_acid conserved 56.2 8.1 0.00018 33.7 2.0 14 291-304 26-39 (129)
174 PRK15482 transcriptional regul 56.2 28 0.0006 33.8 6.1 57 322-378 178-235 (285)
175 TIGR01580 narG respiratory nit 56.1 20 0.00044 42.2 5.8 54 324-377 243-298 (1235)
176 cd02774 MopB_Res-Cmplx1_Nad11- 55.8 25 0.00054 35.9 5.9 44 320-363 142-188 (366)
177 PRK05654 acetyl-CoA carboxylas 55.1 32 0.00069 34.2 6.3 20 341-360 144-163 (292)
178 TIGR01706 NAPA periplasmic nit 55.1 21 0.00046 40.3 5.8 55 322-377 202-261 (830)
179 cd00730 rubredoxin Rubredoxin; 54.2 11 0.00024 27.5 2.2 11 225-235 2-12 (50)
180 COG0761 lytB 4-Hydroxy-3-methy 54.2 28 0.00061 34.6 5.7 45 317-362 203-247 (294)
181 PRK13532 nitrate reductase cat 54.2 25 0.00055 39.7 6.2 56 322-377 202-261 (830)
182 PRK14715 DNA polymerase II lar 54.0 14 0.00031 43.6 4.0 34 292-328 1558-1591(1627)
183 cd02761 MopB_FmdB-FwdB The Mop 53.0 18 0.00039 36.8 4.4 53 325-377 130-192 (415)
184 COG2331 Uncharacterized protei 52.8 5.9 0.00013 31.5 0.6 19 292-310 34-57 (82)
185 PRK12380 hydrogenase nickel in 52.6 9.3 0.0002 32.5 1.8 20 216-235 62-81 (113)
186 cd05005 SIS_PHI Hexulose-6-pho 52.4 26 0.00056 31.5 4.9 55 323-377 72-127 (179)
187 PLN02980 2-oxoglutarate decarb 52.1 29 0.00062 42.5 6.5 63 323-387 595-659 (1655)
188 COG1545 Predicted nucleic-acid 50.6 11 0.00023 33.4 2.0 16 219-234 24-39 (140)
189 PRK11557 putative DNA-binding 50.3 41 0.0009 32.3 6.3 57 319-375 168-225 (278)
190 PF01155 HypA: Hydrogenase exp 50.3 8.5 0.00018 32.7 1.3 21 216-236 62-82 (113)
191 PRK03824 hypA hydrogenase nick 50.0 11 0.00024 33.1 2.0 21 216-236 62-82 (135)
192 PRK11302 DNA-binding transcrip 49.9 56 0.0012 31.4 7.1 55 322-376 171-225 (284)
193 PRK08493 NADH dehydrogenase su 49.9 46 0.001 37.8 7.3 47 320-366 364-413 (819)
194 cd02764 MopB_PHLH The MopB_PHL 49.9 31 0.00067 36.7 5.8 55 323-377 193-257 (524)
195 PF02401 LYTB: LytB protein; 49.5 46 0.001 32.9 6.4 47 315-362 198-244 (281)
196 PRK14873 primosome assembly pr 49.4 14 0.00031 40.8 3.2 44 181-232 356-400 (665)
197 PRK09444 pntB pyridine nucleot 49.0 21 0.00045 37.6 4.1 85 302-388 354-461 (462)
198 COG3961 Pyruvate decarboxylase 48.8 11 0.00024 40.2 2.1 79 307-389 249-335 (557)
199 TIGR00100 hypA hydrogenase nic 48.1 12 0.00026 31.9 1.9 20 216-235 62-81 (115)
200 PF02591 DUF164: Putative zinc 47.9 14 0.00031 27.1 2.0 19 216-238 18-36 (56)
201 COG1579 Zn-ribbon protein, pos 47.8 11 0.00024 36.4 1.8 19 216-238 193-211 (239)
202 COG1996 RPC10 DNA-directed RNA 47.7 11 0.00024 27.6 1.3 11 224-234 6-16 (49)
203 PF02310 B12-binding: B12 bind 47.6 40 0.00088 27.7 5.0 82 304-386 30-121 (121)
204 PF00301 Rubredoxin: Rubredoxi 47.6 16 0.00035 26.3 2.2 13 224-236 1-13 (47)
205 PRK08166 NADH dehydrogenase su 47.2 21 0.00046 40.4 4.2 41 322-362 367-409 (847)
206 PRK00945 acetyl-CoA decarbonyl 47.1 51 0.0011 30.3 5.9 24 104-127 23-46 (171)
207 PRK11337 DNA-binding transcrip 47.1 56 0.0012 31.7 6.7 55 321-375 182-237 (292)
208 COG2051 RPS27A Ribosomal prote 46.6 10 0.00022 29.4 1.1 17 217-233 12-28 (67)
209 PRK08197 threonine synthase; V 46.4 12 0.00026 38.5 1.9 14 223-236 6-19 (394)
210 PRK02947 hypothetical protein; 45.9 44 0.00096 32.1 5.6 53 323-375 103-167 (246)
211 PF01380 SIS: SIS domain SIS d 45.5 22 0.00048 29.5 3.1 56 321-376 48-104 (131)
212 cd04795 SIS SIS domain. SIS (S 45.4 42 0.00092 25.6 4.5 39 322-360 43-81 (87)
213 PRK09130 NADH dehydrogenase su 45.3 65 0.0014 35.8 7.5 45 321-365 359-406 (687)
214 PF13289 SIR2_2: SIR2-like dom 43.9 1.1E+02 0.0023 25.7 7.2 62 317-392 76-141 (143)
215 COG0243 BisC Anaerobic dehydro 43.2 23 0.0005 39.6 3.6 51 324-374 197-252 (765)
216 PF12172 DUF35_N: Rubredoxin-l 42.8 13 0.00028 24.9 1.0 16 219-234 6-21 (37)
217 TIGR00274 N-acetylmuramic acid 42.5 47 0.001 32.9 5.3 53 324-376 124-177 (291)
218 TIGR00375 conserved hypothetic 41.6 12 0.00025 38.6 0.9 26 37-66 36-61 (374)
219 TIGR03129 one_C_dehyd_B formyl 41.1 44 0.00095 33.9 5.1 51 325-375 136-196 (421)
220 PF01475 FUR: Ferric uptake re 40.6 26 0.00056 29.4 2.8 51 179-237 41-93 (120)
221 cd05007 SIS_Etherase N-acetylm 40.6 51 0.0011 31.9 5.1 53 324-376 116-169 (257)
222 PF10571 UPF0547: Uncharacteri 40.3 18 0.0004 22.7 1.3 9 292-300 15-23 (26)
223 PRK05638 threonine synthase; V 40.1 16 0.00034 38.2 1.6 12 224-235 1-12 (442)
224 PF07191 zinc-ribbons_6: zinc- 39.6 13 0.00029 29.1 0.7 12 223-234 16-27 (70)
225 PRK11382 frlB fructoselysine-6 39.5 46 0.00099 33.5 4.8 56 324-379 90-146 (340)
226 PLN02569 threonine synthase 39.4 17 0.00036 38.8 1.7 13 224-236 49-61 (484)
227 TIGR00216 ispH_lytB (E)-4-hydr 39.3 83 0.0018 31.2 6.4 47 315-362 197-243 (280)
228 PRK10886 DnaA initiator-associ 39.0 70 0.0015 29.8 5.6 53 323-375 106-162 (196)
229 cd05005 SIS_PHI Hexulose-6-pho 38.5 1.8E+02 0.004 25.9 8.2 75 311-385 17-95 (179)
230 PRK13936 phosphoheptose isomer 37.9 81 0.0018 29.1 5.9 56 323-378 108-167 (197)
231 PF03604 DNA_RNApol_7kD: DNA d 37.5 35 0.00075 22.6 2.4 9 292-300 18-26 (32)
232 cd05017 SIS_PGI_PMI_1 The memb 37.2 59 0.0013 27.2 4.5 38 323-360 40-77 (119)
233 PRK11543 gutQ D-arabinose 5-ph 37.1 56 0.0012 32.1 5.0 55 323-377 86-141 (321)
234 KOG3954 Electron transfer flav 36.6 41 0.00088 33.2 3.7 58 328-390 276-334 (336)
235 PRK05441 murQ N-acetylmuramic 36.4 1E+02 0.0023 30.5 6.7 54 324-377 129-183 (299)
236 PF09151 DUF1936: Domain of un 36.1 15 0.00031 24.3 0.4 11 293-303 3-14 (36)
237 TIGR00393 kpsF KpsF/GutQ famil 36.1 92 0.002 29.5 6.2 54 323-376 44-98 (268)
238 COG3091 SprT Zn-dependent meta 36.0 10 0.00023 34.1 -0.4 53 182-235 69-127 (156)
239 COG1773 Rubredoxin [Energy pro 35.8 41 0.00088 25.2 2.8 13 223-235 2-14 (55)
240 COG1592 Rubrerythrin [Energy p 35.4 26 0.00056 32.1 2.0 11 224-234 134-144 (166)
241 PF05728 UPF0227: Uncharacteri 35.4 65 0.0014 29.7 4.8 47 313-362 42-90 (187)
242 COG4821 Uncharacterized protei 35.3 68 0.0015 30.5 4.8 39 322-360 100-138 (243)
243 PRK12570 N-acetylmuramic acid- 35.1 1.2E+02 0.0026 30.1 6.9 51 325-375 126-177 (296)
244 COG1832 Predicted CoA-binding 34.6 2.9E+02 0.0063 24.6 8.3 70 318-387 7-91 (140)
245 PRK13371 4-hydroxy-3-methylbut 34.6 2.1E+02 0.0045 29.8 8.6 91 304-395 263-385 (387)
246 PF11071 DUF2872: Protein of u 34.3 1.2E+02 0.0025 26.9 5.8 66 319-384 65-135 (141)
247 PRK10892 D-arabinose 5-phospha 34.1 83 0.0018 31.0 5.7 55 323-377 91-146 (326)
248 TIGR03127 RuMP_HxlB 6-phospho 33.8 2.2E+02 0.0047 25.4 7.9 50 311-360 14-63 (179)
249 cd02771 MopB_NDH-1_NuoG2-N7 Mo 33.8 50 0.0011 34.4 4.2 31 322-352 141-174 (472)
250 TIGR02164 torA trimethylamine- 33.8 65 0.0014 36.4 5.3 51 324-374 208-273 (822)
251 PRK14991 tetrathionate reducta 33.1 81 0.0018 36.8 6.1 53 323-375 282-344 (1031)
252 PRK12360 4-hydroxy-3-methylbut 33.1 1.1E+02 0.0023 30.4 6.1 59 303-362 184-244 (281)
253 PRK00762 hypA hydrogenase nick 32.8 29 0.00062 30.0 1.8 19 216-235 62-80 (124)
254 COG1066 Sms Predicted ATP-depe 32.3 26 0.00056 36.7 1.7 11 224-234 7-17 (456)
255 PRK09462 fur ferric uptake reg 32.3 61 0.0013 28.4 3.9 53 177-237 49-103 (148)
256 CHL00162 thiG thiamin biosynth 32.3 31 0.00067 33.8 2.1 74 43-131 125-203 (267)
257 COG1282 PntB NAD/NADP transhyd 31.3 66 0.0014 33.2 4.3 87 302-389 356-463 (463)
258 PRK01045 ispH 4-hydroxy-3-meth 31.3 1.2E+02 0.0027 30.2 6.3 47 315-362 199-245 (298)
259 COG1675 TFA1 Transcription ini 31.3 24 0.00053 32.5 1.2 11 292-302 133-143 (176)
260 PRK12775 putative trifunctiona 30.6 29 0.00062 40.3 1.9 13 292-304 839-851 (1006)
261 PF02233 PNTB: NAD(P) transhyd 30.6 18 0.00039 38.3 0.2 85 303-388 356-462 (463)
262 TIGR00853 pts-lac PTS system, 30.5 23 0.0005 29.1 0.8 16 114-129 2-17 (95)
263 PRK08329 threonine synthase; V 30.5 26 0.00056 35.4 1.4 11 225-235 2-12 (347)
264 PRK14101 bifunctional glucokin 30.4 1E+02 0.0023 33.7 6.1 55 322-376 511-565 (638)
265 PRK15102 trimethylamine N-oxid 30.3 77 0.0017 35.9 5.2 46 324-369 211-270 (825)
266 PRK11788 tetratricopeptide rep 30.1 32 0.00069 34.1 1.9 15 291-305 368-384 (389)
267 PF13248 zf-ribbon_3: zinc-rib 29.8 26 0.00057 21.7 0.8 8 293-300 18-25 (26)
268 COG1029 FwdB Formylmethanofura 29.8 1E+02 0.0023 31.8 5.4 70 303-376 307-382 (429)
269 TIGR00315 cdhB CO dehydrogenas 29.7 1.2E+02 0.0026 27.6 5.4 24 104-127 16-39 (162)
270 PRK14715 DNA polymerase II lar 29.4 45 0.00097 39.7 3.1 36 292-327 687-722 (1627)
271 PF13289 SIR2_2: SIR2-like dom 29.1 27 0.00059 29.5 1.1 14 198-211 2-15 (143)
272 PRK00945 acetyl-CoA decarbonyl 28.8 46 0.00099 30.6 2.5 13 325-337 107-119 (171)
273 cd02065 B12-binding_like B12 b 28.7 1.4E+02 0.003 24.5 5.4 83 304-387 29-116 (125)
274 PLN02821 1-hydroxy-2-methyl-2- 28.4 1.2E+02 0.0026 32.2 5.8 57 303-362 336-397 (460)
275 PF10263 SprT-like: SprT-like 28.2 32 0.0007 30.1 1.4 16 221-236 120-135 (157)
276 TIGR00354 polC DNA polymerase, 28.1 51 0.0011 37.9 3.2 36 292-328 638-674 (1095)
277 PF11023 DUF2614: Protein of u 27.8 38 0.00083 29.0 1.7 15 293-307 87-101 (114)
278 cd07153 Fur_like Ferric uptake 27.4 64 0.0014 26.6 3.0 52 177-236 32-85 (116)
279 PRK12474 hypothetical protein; 27.3 79 0.0017 33.6 4.4 57 320-389 260-319 (518)
280 PF03447 NAD_binding_3: Homose 27.1 1.1E+02 0.0024 25.2 4.5 35 326-363 59-93 (117)
281 PRK09590 celB cellobiose phosp 26.9 28 0.0006 29.2 0.7 14 116-129 2-15 (104)
282 PF14169 YdjO: Cold-inducible 26.8 40 0.00086 25.6 1.5 18 290-307 38-55 (59)
283 PF04413 Glycos_transf_N: 3-De 26.8 76 0.0016 29.2 3.7 35 326-364 95-129 (186)
284 PF02150 RNA_POL_M_15KD: RNA p 26.5 23 0.00051 23.7 0.2 12 293-304 3-14 (35)
285 PRK00415 rps27e 30S ribosomal 26.5 43 0.00093 25.4 1.6 16 218-233 5-20 (59)
286 TIGR00315 cdhB CO dehydrogenas 26.2 48 0.001 30.1 2.2 57 325-386 99-157 (162)
287 PF01396 zf-C4_Topoisom: Topoi 26.1 30 0.00066 23.7 0.7 12 293-304 3-14 (39)
288 PRK05978 hypothetical protein; 26.0 37 0.0008 30.5 1.4 16 291-306 52-67 (148)
289 PF13380 CoA_binding_2: CoA bi 25.9 3.9E+02 0.0085 22.3 7.7 35 330-364 3-38 (116)
290 PF09986 DUF2225: Uncharacteri 25.1 33 0.00072 32.4 1.0 14 224-237 5-18 (214)
291 PF02302 PTS_IIB: PTS system, 24.8 34 0.00074 26.8 0.9 13 117-129 1-13 (90)
292 PRK02935 hypothetical protein; 24.6 51 0.0011 27.9 1.9 18 292-309 87-104 (110)
293 COG1110 Reverse gyrase [DNA re 24.6 70 0.0015 37.2 3.4 39 292-339 709-747 (1187)
294 PRK04351 hypothetical protein; 24.5 58 0.0013 29.1 2.4 18 219-236 107-124 (149)
295 KOG1532 GTPase XAB1, interacts 24.3 1E+02 0.0022 30.9 4.1 40 325-364 17-58 (366)
296 PRK11823 DNA repair protein Ra 24.3 45 0.00098 35.0 1.9 39 326-364 79-119 (446)
297 COG1933 Archaeal DNA polymeras 24.0 34 0.00074 33.1 0.8 42 194-235 96-149 (253)
298 PF14803 Nudix_N_2: Nudix N-te 24.0 29 0.00062 23.3 0.2 14 293-306 2-15 (34)
299 PF01596 Methyltransf_3: O-met 23.6 2.7E+02 0.0058 26.0 6.8 66 321-389 40-117 (205)
300 PF04216 FdhE: Protein involve 23.5 49 0.0011 32.5 1.9 20 216-235 185-208 (290)
301 cd02756 MopB_Arsenite-Ox Arsen 23.4 1.4E+02 0.003 33.3 5.5 51 321-371 218-288 (676)
302 PF08274 PhnA_Zn_Ribbon: PhnA 23.3 35 0.00076 22.3 0.5 9 291-299 2-10 (30)
303 PF04810 zf-Sec23_Sec24: Sec23 23.0 44 0.00096 22.9 1.0 18 291-308 2-19 (40)
304 cd05564 PTS_IIB_chitobiose_lic 22.9 41 0.00088 27.5 1.0 13 117-129 1-13 (96)
305 cd01121 Sms Sms (bacterial rad 22.8 41 0.00089 34.5 1.2 38 326-363 81-120 (372)
306 PRK00448 polC DNA polymerase I 22.6 52 0.0011 39.8 2.1 12 293-304 935-946 (1437)
307 TIGR00416 sms DNA repair prote 22.5 47 0.001 35.0 1.6 39 326-364 93-133 (454)
308 PRK10996 thioredoxin 2; Provis 22.4 4.8E+02 0.01 22.3 7.8 43 291-338 22-64 (139)
309 PF04606 Ogr_Delta: Ogr/Delta- 22.4 39 0.00085 24.0 0.7 10 293-302 1-10 (47)
310 TIGR00155 pqiA_fam integral me 22.3 57 0.0012 33.9 2.1 11 291-301 33-43 (403)
311 COG2176 PolC DNA polymerase II 22.2 58 0.0013 38.4 2.3 12 293-304 941-952 (1444)
312 PRK15103 paraquat-inducible me 21.9 50 0.0011 34.5 1.6 12 291-302 30-41 (419)
313 KOG3035 Isoamyl acetate-hydrol 21.6 48 0.001 31.8 1.3 16 299-314 3-18 (245)
314 COG0498 ThrC Threonine synthas 21.6 55 0.0012 34.2 1.8 57 329-387 127-195 (411)
315 PF10087 DUF2325: Uncharacteri 21.5 2.4E+02 0.0052 22.7 5.3 41 319-360 41-82 (97)
316 PF03029 ATP_bind_1: Conserved 21.4 1E+02 0.0022 29.4 3.5 45 332-376 1-49 (238)
317 PF06676 DUF1178: Protein of u 20.8 1.2E+02 0.0026 27.2 3.6 20 291-310 32-57 (148)
318 PF06906 DUF1272: Protein of u 20.7 49 0.0011 24.9 0.9 11 292-302 42-52 (57)
319 TIGR03646 YtoQ_fam YtoQ family 20.5 1.9E+02 0.0042 25.6 4.6 46 319-364 68-114 (144)
320 PF14353 CpXC: CpXC protein 20.4 55 0.0012 28.0 1.3 19 217-235 31-49 (128)
321 PRK00087 4-hydroxy-3-methylbut 20.2 2.1E+02 0.0046 31.5 6.1 59 303-362 181-241 (647)
322 PF09297 zf-NADH-PPase: NADH p 20.1 37 0.0008 22.0 0.2 13 292-304 4-16 (32)
323 PF04475 DUF555: Protein of un 20.1 69 0.0015 26.9 1.7 19 292-310 48-66 (102)
324 COG4049 Uncharacterized protei 20.0 32 0.0007 25.9 -0.2 13 290-302 16-28 (65)
No 1
>KOG2683 consensus Sirtuin 4 and related class II sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=3e-73 Score=525.14 Aligned_cols=290 Identities=61% Similarity=1.013 Sum_probs=276.1
Q ss_pred CCCCCCCCCCCccccCCCCCCCCCCcchHHHHhc-------CCcEEEEECCcccccCCCCCcCCCC-cCcc-CCCCCCCh
Q 016025 81 SSRHEDKAPASPKVLRDKKAVPDADPPSIEDINQ-------FAKLIVLTGAGISTECGIPDYRSPN-GAYS-SGFKPITH 151 (396)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-------ak~IVvlTGAGISaaSGIPdFRs~~-Gl~~-~~~~p~~~ 151 (396)
++++++|.| ...+.+++.||+++|...+.|++ +++++|+|||||||+||||||||++ |+|. +.++|+++
T Consensus 6 ~l~~~s~~p--~s~~~~~k~VP~~~pl~e~~ikkl~~li~~~~rllvlTGAGISTEsGIPDYRS~~VGlYars~~kPI~h 83 (305)
T KOG2683|consen 6 SLGNESKAP--PSFLMARKYVPHADPLCEEDIKKLYRLIGTSDRLLVLTGAGISTESGIPDYRSEDVGLYARSAHKPIQH 83 (305)
T ss_pred ccccCCCCC--chhhhhccccCCCCCCCHHHHHHHHHHHccCCceEEEecCcccccCCCCcccCCCccceeecCCCcchH
Confidence 799999999 77889999999999998877764 8999999999999999999999999 9998 57899999
Q ss_pred HHHhhchhhHHHHHHHHHhhhhhcccCCCCHHHHHHHHHHHhCCCceeeecCccchHhhhCCCc-eeeccccceeeeCCC
Q 016025 152 QQFVRSSRARRRYWARSYAGWRRFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNP-LELHGTVYTVVCLDC 230 (396)
Q Consensus 152 ~~f~~~~~~~~~~w~~~~~~~~~~~~a~Pn~~H~aLa~Le~~g~l~~VITQNIDgLh~kAG~~~-iElHGsl~~~~C~~C 230 (396)
++|.++...+.+||+|.|.+|++|.+++||++|+||++||+.|+++++||||||+||.|||++. .|+||+...+.|..|
T Consensus 84 qdf~rSs~~RqRYWaRnf~gWprFs~aqPn~~H~ALs~wE~~~r~~wliTQNVD~LH~kAGS~~~tElHG~~~~VkCl~C 163 (305)
T KOG2683|consen 84 QDFVRSSRCRQRYWARNFVGWPRFSAAQPNPAHYALSKWEKAGRFQWLITQNVDRLHTKAGSRMVTELHGSAYQVKCLSC 163 (305)
T ss_pred HHHhhhhHHHHHHHHHhhcCcchhhhcCCCchhHHHHHHhhcCceEEEeeccchhhhhhccccceeeeccceEEEEeccc
Confidence 9999999999999999999999999999999999999999999999999999999999999998 999999999999999
Q ss_pred CcccchhhHHHHHHhhChhHHHHHhhhcCCCCCCCCCcCcccCCCCCcccccccccccCCCCcCCCCCCcccCcEEEcCC
Q 016025 231 GFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVVFFGD 310 (396)
Q Consensus 231 ~~~~~~~~~~~~l~~~np~~~~~~~~l~~g~p~~~~s~~~~~~pd~d~~i~~~~~~~~~~iP~Cp~Cgg~LRP~VVlFGE 310 (396)
+...+|..++|+|..+||.|.++.++++ +++||+|++|++++ ++.+.||.|++|||.|||+|+||||
T Consensus 164 ~y~~~R~~~Qdrl~~~NP~fke~~~~~~------------~~~pDgDv~lpl~~-e~gF~IPeC~~CgG~lKpdV~fFGd 230 (305)
T KOG2683|consen 164 GYIEPRQTFQDRLKYLNPGFKEAIVSPG------------HQRPDGDVELPLEF-EEGFQIPECEKCGGLLKPDVTFFGD 230 (305)
T ss_pred CcccchHHHHHHHHhcCcchhhhccCcc------------ccCCCCCeecchhh-hhcccCCcccccCCccCCceEEecC
Confidence 9999999999999999999998865432 47899999999986 7789999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCCCCCCCcccEEEeCcHHHHHHHH
Q 016025 311 NVPKDRADKAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRV 385 (396)
Q Consensus 311 ~lp~~~~~~a~~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~~t~~d~~a~l~I~~~a~evL~~L 385 (396)
+++.+..+.+.+.+++||-+||+||||.|+..++++..|+..+.++.|||+++|+.|+.++++|+.+|+|+|+++
T Consensus 231 nvn~dkv~~~~~~v~e~dg~LvlGsSL~v~Sg~r~i~~a~~~k~pi~IvNIGpTRaD~~a~lKl~~r~gdvl~~~ 305 (305)
T KOG2683|consen 231 NVNKDKVTFCMEKVKECDGFLVLGSSLMVLSGFRFIRHAHEKKKPIAIVNIGPTRADDMATLKLNYRIGEVLKEM 305 (305)
T ss_pred CCChHHHHHHHHHHhccCceEEechhHHHHHHHHHHHHHHhhcCcEEEEecCCcchhheeeeeecchHhhhhhcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999864
No 2
>cd01409 SIRT4 SIRT4: Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=100.00 E-value=3e-66 Score=499.69 Aligned_cols=258 Identities=59% Similarity=0.975 Sum_probs=227.7
Q ss_pred HHHHhcCCcEEEEECCcccccCCCCCcCCCCcCccCCCCCCChHHHhhchhhHHHHHHHHHhhhhhcccCCCCHHHHHHH
Q 016025 109 IEDINQFAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVRSSRARRRYWARSYAGWRRFMAAQPNPAHFALA 188 (396)
Q Consensus 109 ~~~i~~ak~IVvlTGAGISaaSGIPdFRs~~Gl~~~~~~p~~~~~f~~~~~~~~~~w~~~~~~~~~~~~a~Pn~~H~aLa 188 (396)
.++|+++++|||+|||||||+||||||||++|+|+..+.++++..|.++|..+|.||.+.+..+..+.+++||.+|++|+
T Consensus 2 ~~~l~~sk~ivvlTGAGiSt~SGIPdFR~~~Glw~~~~~~~~~~~f~~~p~~~~~~~~~~~~~~~~~~~~~Pn~~H~~la 81 (260)
T cd01409 2 QDFVARSRRLLVLTGAGISTESGIPDYRSEGGLYSRTFRPMTHQEFMRSPAARQRYWARSFVGWPRFSAAQPNAAHRALA 81 (260)
T ss_pred hHHHhcCCCEEEEeCceeehhhCCCCCCCcCCcccCCCCCCCHHHHHhCcHHHHHHHHHHHhhhhhhccCCCCHHHHHHH
Confidence 57899999999999999999999999999999998547888999999999988999987766665667899999999999
Q ss_pred HHHHhCCCceeeecCccchHhhhCCCc-eeeccccceeeeCCCCcccchhhHHHHHHhhChhHHHHHhhhcCCCCCCCCC
Q 016025 189 SLEKAGRIDCMITQNVDRLHHRAGSNP-LELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRS 267 (396)
Q Consensus 189 ~Le~~g~l~~VITQNIDgLh~kAG~~~-iElHGsl~~~~C~~C~~~~~~~~~~~~l~~~np~~~~~~~~l~~g~p~~~~s 267 (396)
+|+++|++.+||||||||||++||+++ +|+|||+++++|..|++.++++.+.+.+...+|.|.+...
T Consensus 82 ~L~~~g~~~~viTQNIDgLh~~aG~~~vielHG~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~------------ 149 (260)
T cd01409 82 ALEAAGRLHGLITQNVDGLHTKAGSRNVVELHGSLHRVVCLSCGFRTPRAELQDRLEALNPGFAEQAA------------ 149 (260)
T ss_pred HHHHcCCCeeEEeeccchhHHHcCCCCEEEEeeecCEEEeCCCcCccCHHHHHHHHhhcCcchhhhhc------------
Confidence 999999999999999999999999988 9999999999999999999988887777777777654310
Q ss_pred cCcccCCCCCcccccccccccCCCCcCCCCCCcccCcEEEcCCCCCHHHHHHHHHHHhhCCeEEEEccCcchhhHHHHHH
Q 016025 268 FGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSLMTMSAYRLVR 347 (396)
Q Consensus 268 ~~~~~~pd~d~~i~~~~~~~~~~iP~Cp~Cgg~LRP~VVlFGE~lp~~~~~~a~~~~~~aDllLVvGTSl~V~pa~~Lv~ 347 (396)
...|+++..++++.. ....+|+||.|||.|||+||||||.+|.+.++++.+++++||++|||||||.|+|++.|+.
T Consensus 150 ---~~~~~~~~~~~~~~~-~~~~~p~C~~Cgg~lrP~VV~FGE~lp~~~~~~a~~~~~~aDlllviGTSl~V~pa~~l~~ 225 (260)
T cd01409 150 ---GQAPDGDVDLEDEQV-AGFRVPECERCGGVLKPDVVFFGENVPRDRVVTAAARLAEADALLVLGSSLMVYSGYRFVL 225 (260)
T ss_pred ---ccCCCcccccchhhc-ccCCCCCCCCCCCEECCCEEECCCCCCHHHHHHHHHHHhcCCEEEEeCcCceecchhhHHH
Confidence 133445444433211 1235899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHCCCeEEEEcCCCCCCCCcccEEEeCcHHHHH
Q 016025 348 AAHEAGSTIAIVNVGETRADDLTTLKISARLGEIL 382 (396)
Q Consensus 348 ~a~~~g~~lIiIN~~~t~~d~~a~l~I~~~a~evL 382 (396)
.++++|+++|+||+++|+.|..++++|+++++++|
T Consensus 226 ~a~~~g~~viiIN~~~t~~d~~a~~~i~~~~~~~l 260 (260)
T cd01409 226 AAAEAGLPIAIVNIGPTRADHLATLKVDARCGEVL 260 (260)
T ss_pred HHHHCCCcEEEEcCCCCCCCccccEEEeCChhhhC
Confidence 99999999999999999999999999999999986
No 3
>PRK05333 NAD-dependent deacetylase; Provisional
Probab=100.00 E-value=8.2e-64 Score=488.74 Aligned_cols=274 Identities=49% Similarity=0.800 Sum_probs=235.2
Q ss_pred CCCCcc----hHHHHhcCCcEEEEECCcccccCCCCCcCCCCcCccCCCCCCChHHHhhchhhHHHHHHHHHhhhhhccc
Q 016025 102 PDADPP----SIEDINQFAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVRSSRARRRYWARSYAGWRRFMA 177 (396)
Q Consensus 102 ~~~~~~----~~~~i~~ak~IVvlTGAGISaaSGIPdFRs~~Gl~~~~~~p~~~~~f~~~~~~~~~~w~~~~~~~~~~~~ 177 (396)
|+.|+. +.++|+++++|||+||||||++||||||||++|+|.. +.++++..|..++..++.||.+.+..|..+.+
T Consensus 2 ~~~~~~~l~~l~~~i~~~~~ivvlTGAGiS~~SGIPdFR~~~G~w~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (285)
T PRK05333 2 PDADPAALDALQDFVERHPRLFVLTGAGISTDSGIPDYRDRNGQWKR-SPPITYQAFMGSDAARRRYWARSMVGWPVFGR 80 (285)
T ss_pred CcccHHHHHHHHHHHHhCCcEEEEeCCccccccCCCcccCCCCcccc-CCcccHHHHhcCchhhHHHHHHHHhhchhccc
Confidence 455554 4577889999999999999999999999999999974 67788888888888889999877666656678
Q ss_pred CCCCHHHHHHHHHHHhCCCceeeecCccchHhhhCCCc-eeeccccceeeeCCCCcccchhhHHHHHHhhChhHHHHHhh
Q 016025 178 AQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNP-LELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIES 256 (396)
Q Consensus 178 a~Pn~~H~aLa~Le~~g~l~~VITQNIDgLh~kAG~~~-iElHGsl~~~~C~~C~~~~~~~~~~~~l~~~np~~~~~~~~ 256 (396)
++||++|++|++|+++|++++||||||||||+|||+++ +|+||++++++|++|++.++++.+.+.+...++.|.+...
T Consensus 81 ~~Pn~~H~aLa~L~~~g~~~~viTQNIDgLh~rAG~~~ViElHG~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~- 159 (285)
T PRK05333 81 AQPNAAHHALARLGAAGRIERLVTQNVDGLHQRAGSRDVIELHGRLDGVRCMGCGARHPRAEIQHVLEAANPEWLALEA- 159 (285)
T ss_pred CCCCHHHHHHHHHHHcCCcccEEecccchhHHHcCCCCEEeecCCcCEEEECCCCCcCCHHHHHHHHhhcCcchhhhhc-
Confidence 99999999999999999999999999999999999888 9999999999999999999988777666555555543211
Q ss_pred hcCCCCCCCCCcCcccCCCCCcccccccccccCCCCcCCCCCCcccCcEEEcCCCCCHHHHHHHHHHHhhCCeEEEEccC
Q 016025 257 LDYGSPGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSS 336 (396)
Q Consensus 257 l~~g~p~~~~s~~~~~~pd~d~~i~~~~~~~~~~iP~Cp~Cgg~LRP~VVlFGE~lp~~~~~~a~~~~~~aDllLVvGTS 336 (396)
++.+++++..+... .....+|+||.|||+|||+||||||.+|++.++++.++++++|++||||||
T Consensus 160 --------------~~~~~~~~~~~~~~-~~~~~iP~C~~Cgg~lrP~Vv~FgE~lp~~~~~~a~~~~~~~DlllvvGTS 224 (285)
T PRK05333 160 --------------APAPDGDADLEWAA-FDHFRVPACPACGGILKPDVVFFGENVPRERVAAARAALDAADAVLVVGSS 224 (285)
T ss_pred --------------ccCCCccccccccc-cccCCCCCCCCCCCcccCCEEEcCCCCCHHHHHHHHHHHhcCCEEEEECcC
Confidence 12233333332110 012358999999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHHHHHHHCCCeEEEEcCCCCCCCCcccEEEeCcHHHHHHHHHHhCCCC
Q 016025 337 LMTMSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVLDVGSLS 392 (396)
Q Consensus 337 l~V~pa~~Lv~~a~~~g~~lIiIN~~~t~~d~~a~l~I~~~a~evL~~L~~~~~l~ 392 (396)
+.|+|++.++..+.++|+++|+||+++++.+..+++.|.++++++|++|++.++|+
T Consensus 225 l~V~p~~~~~~~a~~~g~~~i~IN~~~t~~~~~~~~~i~g~~~evL~~l~~~l~~~ 280 (285)
T PRK05333 225 LMVYSGYRFCVWAAQQGKPIAALNLGRTRADPLLTLKVEASCAQALAALVARLGLA 280 (285)
T ss_pred ceecchhhhHHHHHHCCCeEEEECCCCCCCCcceeEEEeCCHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999998875
No 4
>PRK14138 NAD-dependent deacetylase; Provisional
Probab=100.00 E-value=5.3e-62 Score=466.17 Aligned_cols=239 Identities=36% Similarity=0.641 Sum_probs=212.1
Q ss_pred hHHHHhcCCcEEEEECCcccccCCCCCcCCCCcCccCCCCC-CChHHHhhchhhHHHHHHHHHhhhhhcccCCCCHHHHH
Q 016025 108 SIEDINQFAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKP-ITHQQFVRSSRARRRYWARSYAGWRRFMAAQPNPAHFA 186 (396)
Q Consensus 108 ~~~~i~~ak~IVvlTGAGISaaSGIPdFRs~~Gl~~~~~~p-~~~~~f~~~~~~~~~~w~~~~~~~~~~~~a~Pn~~H~a 186 (396)
+.++|++|++|||+||||||++||||||||++|+|+..... .+...|.++|+.+|.||.+.+. .+.+++||.+|++
T Consensus 4 l~~~l~~a~~ivv~tGAGiS~~SGIp~fR~~~gl~~~~~~~~~~~~~~~~~p~~~w~~~~~~~~---~~~~~~Pn~~H~a 80 (244)
T PRK14138 4 FLELLNESRLTVTLTGAGISTPSGIPDFRGPQGIYKKYPQNVFDIDFFYSHPEEFYRFAKEGIF---PMLEAKPNLAHVL 80 (244)
T ss_pred HHHHHHhCCCEEEEECcccchhhCCCCcCCCCCCccCCcccccCHHHHHhCHHHHHHHHHHhhc---ccccCCCCHHHHH
Confidence 57899999999999999999999999999999999752122 3567788899888888764322 3457999999999
Q ss_pred HHHHHHhCCCceeeecCccchHhhhCCCc-eeeccccceeeeCCCCcccchhhHHHHHHhhChhHHHHHhhhcCCCCCCC
Q 016025 187 LASLEKAGRIDCMITQNVDRLHHRAGSNP-LELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSD 265 (396)
Q Consensus 187 La~Le~~g~l~~VITQNIDgLh~kAG~~~-iElHGsl~~~~C~~C~~~~~~~~~~~~l~~~np~~~~~~~~l~~g~p~~~ 265 (396)
|++|+++|++.+||||||||||+|||+++ +|+||++++++|..|++.|+++.+.+.+
T Consensus 81 la~L~~~g~~~~viTQNIDgLh~~aG~~~VielHG~~~~~~C~~C~~~~~~~~~~~~~---------------------- 138 (244)
T PRK14138 81 LAKLEEKGLIEAVITQNIDRLHQKAGSKKVIELHGNVEEYYCVRCGKRYTVEDVIEKL---------------------- 138 (244)
T ss_pred HHHHHHcCCceEEEeecccChhhHcCCCeEEEccCCcCeeEECCCCCcccHHHHHHHH----------------------
Confidence 99999999999999999999999999888 9999999999999999988765432211
Q ss_pred CCcCcccCCCCCcccccccccccCCCCcCCCCCCcccCcEEEcCCCCCHHHHHHHHHHHhhCCeEEEEccCcchhhHHHH
Q 016025 266 RSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSLMTMSAYRL 345 (396)
Q Consensus 266 ~s~~~~~~pd~d~~i~~~~~~~~~~iP~Cp~Cgg~LRP~VVlFGE~lp~~~~~~a~~~~~~aDllLVvGTSl~V~pa~~L 345 (396)
....+|+||.|||.|||+||||||.+|++.++++.+++++||++|||||||.|+|++.+
T Consensus 139 ---------------------~~~~~p~Cp~Cgg~lrP~Vv~FgE~~p~~~~~~~~~~~~~aDl~lviGTSl~V~pa~~l 197 (244)
T PRK14138 139 ---------------------EKSDVPRCDDCSGLIRPNIVFFGEALPQDALREAIRLSSKASLMIVMGSSLVVYPAAEL 197 (244)
T ss_pred ---------------------hcCCCCCCCCCCCeECCCEEECCCcCCHHHHHHHHHHHhcCCEEEEeCcCCeeecHhHH
Confidence 01147999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCeEEEEcCCCCCCCCcccEEEeCcHHHHHHHHHHhCCCC
Q 016025 346 VRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVLDVGSLS 392 (396)
Q Consensus 346 v~~a~~~g~~lIiIN~~~t~~d~~a~l~I~~~a~evL~~L~~~~~l~ 392 (396)
+..++++|+++++||+++|+.|..++++|+++++++|++|++-+|++
T Consensus 198 ~~~~~~~g~~~i~iN~~~t~~d~~~~~~i~~~~~~~l~~l~~~~~~~ 244 (244)
T PRK14138 198 PLITVRSGGKLVIVNLGETPLDDIATLKYNMDVVEFANRVMSEGGIS 244 (244)
T ss_pred HHHHHHcCCeEEEEcCCCCCCCcceeEEEeCCHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999988764
No 5
>PTZ00409 Sir2 (Silent Information Regulator) protein; Provisional
Probab=100.00 E-value=2.2e-60 Score=460.70 Aligned_cols=237 Identities=28% Similarity=0.497 Sum_probs=199.5
Q ss_pred chHHHHhcCCcEEEEECCcccccCCCCCcCCC-CcCccCCCCC---CChHHHhhchhhHHHHHHHHHhhhhhcccCCCCH
Q 016025 107 PSIEDINQFAKLIVLTGAGISTECGIPDYRSP-NGAYSSGFKP---ITHQQFVRSSRARRRYWARSYAGWRRFMAAQPNP 182 (396)
Q Consensus 107 ~~~~~i~~ak~IVvlTGAGISaaSGIPdFRs~-~Gl~~~~~~p---~~~~~f~~~~~~~~~~w~~~~~~~~~~~~a~Pn~ 182 (396)
.+.++|+++++|||+|||||||+||||||||+ +|+|+ .++| .+...|.++|...|.||.+. ....+++||.
T Consensus 20 ~l~~~l~~s~~ivvlTGAGiSteSGIPdFR~~~~Glw~-~~~~~~~~t~~~f~~~p~~~~~~~~~~----~~~~~a~PN~ 94 (271)
T PTZ00409 20 DLADMIRKCKYVVALTGSGTSAESNIPSFRGPSSSIWS-KYDPKIYGTIWGFWKYPEKIWEVIRDI----SSDYEIELNP 94 (271)
T ss_pred HHHHHHHhCCcEEEEECCeechhhCCCcccCCCCcccc-CCCHHHhccHHHHHHChHHHHHHHHHh----hhcccCCCCH
Confidence 35788999999999999999999999999998 69997 4665 35667788887666665432 1234789999
Q ss_pred HHHHHHHHHHhCCCceeeecCccchHhhhCCCc-eeeccccceeeeCCCCcccchhhHHHHHHhhChhHHHHHhhhcCCC
Q 016025 183 AHFALASLEKAGRIDCMITQNVDRLHHRAGSNP-LELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGS 261 (396)
Q Consensus 183 ~H~aLa~Le~~g~l~~VITQNIDgLh~kAG~~~-iElHGsl~~~~C~~C~~~~~~~~~~~~l~~~np~~~~~~~~l~~g~ 261 (396)
+|++|++|++.|++.+||||||||||+|||+++ +|+||++++++|..|++.+..... +...++.
T Consensus 95 ~H~aLa~Le~~g~~~~vITQNIDgLh~rAGs~~V~ElHG~l~~~~C~~C~~~~~~~~~---~~~~~~~------------ 159 (271)
T PTZ00409 95 GHVALSTLESLGYLKFVVTQNVDGLHEESGNTKVIPLHGSVFEARCCTCRKTIQLNKI---MLQKTSH------------ 159 (271)
T ss_pred HHHHHHHHHhcCCCcEEEeccccchHhHcCCCcEEEeccCcCcceeCCCCCCcccCHH---HHhhhhh------------
Confidence 999999999999999999999999999999988 999999999999999987654321 0000000
Q ss_pred CCCCCCcCcccCCCCCcccccccccccCCCCcCCCCCCcccCcEEEcCCCCCHHHHHHHHHHHhhCCeEEEEccCcchhh
Q 016025 262 PGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSLMTMS 341 (396)
Q Consensus 262 p~~~~s~~~~~~pd~d~~i~~~~~~~~~~iP~Cp~Cgg~LRP~VVlFGE~lp~~~~~~a~~~~~~aDllLVvGTSl~V~p 341 (396)
. ....+|+|+ |||+|||+||||||.+|++.++++.+++++||++|||||||+|+|
T Consensus 160 ------------------~------~~~~~P~C~-Cgg~lrP~VV~FGE~lp~~~~~~a~~~~~~aDlllviGTSl~V~p 214 (271)
T PTZ00409 160 ------------------F------MHQLPPECP-CGGIFKPNVILFGEVIPKSLLKQAEKEIDKCDLLLVVGTSSSVST 214 (271)
T ss_pred ------------------h------ccCCCCCCC-CCCcccCcEEEeCCcCCHHHHHHHHHHHHcCCEEEEECCCCcccC
Confidence 0 011368999 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHCCCeEEEEcCCCCCCCC-cccEEEeCcHHHHHHHHHHhC
Q 016025 342 AYRLVRAAHEAGSTIAIVNVGETRADD-LTTLKISARLGEILPRVLDVG 389 (396)
Q Consensus 342 a~~Lv~~a~~~g~~lIiIN~~~t~~d~-~a~l~I~~~a~evL~~L~~~~ 389 (396)
+++|+..|+++|+++|+||+++|++++ .++++|++++++++. +++++
T Consensus 215 a~~l~~~a~~~g~~vi~IN~~~t~~~~~~~d~~i~~~~~~~~~-~~~~~ 262 (271)
T PTZ00409 215 ATNLCYRAHRKKKKIVEVNISKTYITNRISDYHVRAKFSELAQ-ISDIL 262 (271)
T ss_pred HHHHHHHHHHcCCCEEEECCCCCCCCCccccEEEECcHHHHHH-HHHHh
Confidence 999999999999999999999999874 689999999999995 44443
No 6
>COG0846 SIR2 NAD-dependent protein deacetylases, SIR2 family [Transcription]
Probab=100.00 E-value=1.1e-60 Score=456.08 Aligned_cols=237 Identities=39% Similarity=0.662 Sum_probs=208.1
Q ss_pred hHHHHhcCCcEEEEECCcccccCCCCCcCCCCcCccCCCCC---CChHHHhhchhhHHHHHHHHHhhhhhcccCCCCHHH
Q 016025 108 SIEDINQFAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKP---ITHQQFVRSSRARRRYWARSYAGWRRFMAAQPNPAH 184 (396)
Q Consensus 108 ~~~~i~~ak~IVvlTGAGISaaSGIPdFRs~~Gl~~~~~~p---~~~~~f~~~~~~~~~~w~~~~~~~~~~~~a~Pn~~H 184 (396)
+.++|++|++|||+|||||||+|||||||+.+|+|..+|+| ++.+.|.++|+..|.|+.+... ....++||.+|
T Consensus 5 ~~~~l~~a~~ivvltGAGiSa~sGIpdFR~~~Gl~~~~~~p~~l~s~~~f~~~p~~~~~f~~~~~~---~~~~a~Pn~~H 81 (250)
T COG0846 5 VAQALKEAKRIVVLTGAGISAESGIPDFRSKDGLWSDKYDPEDLASPSGFRRDPELVWDFYSERLR---LLYLAQPNKAH 81 (250)
T ss_pred HHHHHHhcCcEEEEeCCccccccCCCcccCCCCCCCCCCCHHHHhCHHHHhhCHHHHHHHHHHHHH---hhhcCCCCHHH
Confidence 56789999999999999999999999999999999856776 4778888888766655543221 23358999999
Q ss_pred HHHHHHHHhCCCceeeecCccchHhhhCCCc-eeeccccceeeeCCCCcccchhhHHHHHHhhChhHHHHHhhhcCCCCC
Q 016025 185 FALASLEKAGRIDCMITQNVDRLHHRAGSNP-LELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPG 263 (396)
Q Consensus 185 ~aLa~Le~~g~l~~VITQNIDgLh~kAG~~~-iElHGsl~~~~C~~C~~~~~~~~~~~~l~~~np~~~~~~~~l~~g~p~ 263 (396)
++|++|++.+++++||||||||||++||+++ +||||++.+.+|..|+..++.+.+...
T Consensus 82 ~~la~le~~~~~~~iiTQNiD~Lhe~AGs~~Vi~lHGsl~~~~C~~C~~~~~~~~~~~~--------------------- 140 (250)
T COG0846 82 YALAELEDKGKLLRIITQNIDGLHERAGSKNVIELHGSLKRVRCSKCGNQYYDEDVIKF--------------------- 140 (250)
T ss_pred HHHHHHhhcCCceEEEecccchHHHHcCCCcEEEeccceeeeEeCCCcCccchhhhhhh---------------------
Confidence 9999999999999999999999999999999 999999999999999988764321000
Q ss_pred CCCCcCcccCCCCCcccccccccccCCCCcCCCCCC-cccCcEEEcCCCCCHHHHHHHHHHHhhCCeEEEEccCcchhhH
Q 016025 264 SDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNG-VLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSLMTMSA 342 (396)
Q Consensus 264 ~~~s~~~~~~pd~d~~i~~~~~~~~~~iP~Cp~Cgg-~LRP~VVlFGE~lp~~~~~~a~~~~~~aDllLVvGTSl~V~pa 342 (396)
.....+|+||+||+ .|||+||||||.+|++.++.+.+.+++||++||+|||+.|+|+
T Consensus 141 ----------------------~~~~~~p~C~~Cg~~~lrP~VV~fGE~lp~~~~~~~~~~~~~~d~liviGTSl~V~Pa 198 (250)
T COG0846 141 ----------------------IEDGLIPRCPKCGGPVLRPDVVWFGEPLPASFLDEALEALKEADLLIVIGTSLKVYPA 198 (250)
T ss_pred ----------------------cccCCCCcCccCCCccccCCEEEeCCCCCHHHHHHHHHHhccCCEEEEECcceEEcCh
Confidence 00125899999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCeEEEEcCCCCCCCCcccEEEeCcHHHHHHHHHHhCC
Q 016025 343 YRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVLDVGS 390 (396)
Q Consensus 343 ~~Lv~~a~~~g~~lIiIN~~~t~~d~~a~l~I~~~a~evL~~L~~~~~ 390 (396)
+.++..++++|+.+++||.++++++..+++.++++++++++.|++.+.
T Consensus 199 a~~p~~~~~~g~~~i~iN~~~~~~~~~~d~~i~~~a~~~~~~l~~~~~ 246 (250)
T COG0846 199 AGLPELAKRRGAKVIEINLEPTRLDPIADEVIRGDAGEVLPLLLEELL 246 (250)
T ss_pred hhhhHHHHhcCCEEEEECCCcccCcchhHHHHHhhHHHHHHHHHHHhh
Confidence 999988999999999999999999999999999999999999987654
No 7
>cd01413 SIR2_Af2 SIR2_Af2: Archaeal and prokaryotic group which includes Archaeoglobus fulgidus Sir2-Af2, Sulfolobus solfataricus ssSir2, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The Sir2 homolog from the archaea Sulfolobus solftaricus deacetylates the non-specific DNA protein Alba to mediate transcription repression.
Probab=100.00 E-value=1.6e-59 Score=443.24 Aligned_cols=218 Identities=44% Similarity=0.750 Sum_probs=193.1
Q ss_pred HhcCCcEEEEECCcccccCCCCCcCCCCcCccCCCCC---CChHHHhhchhhHHHHHHHHHhhhhhcccCCCCHHHHHHH
Q 016025 112 INQFAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKP---ITHQQFVRSSRARRRYWARSYAGWRRFMAAQPNPAHFALA 188 (396)
Q Consensus 112 i~~ak~IVvlTGAGISaaSGIPdFRs~~Gl~~~~~~p---~~~~~f~~~~~~~~~~w~~~~~~~~~~~~a~Pn~~H~aLa 188 (396)
|++|++|||+||||||++|||||||+++|+|+. +.+ .+...|.++|..+|.||.+.+. .+.+++||.+|++|+
T Consensus 1 l~~a~~ivv~tGAGiS~~sGIp~FR~~~glw~~-~~~~~~~~~~~f~~~p~~~w~~~~~~~~---~~~~a~Pn~~H~~La 76 (222)
T cd01413 1 LTKSRKTVVLTGAGISTESGIPDFRSPDGLWKK-YDPEEVASIDYFYRNPEEFWRFYKEIIL---GLLEAQPNKAHYFLA 76 (222)
T ss_pred CCCCCeEEEEECchhhhhhCCCCccCcCCCcCC-CCHHHhccHHHHhHCHHHHHHHHHHHhc---ccCCCCCCHHHHHHH
Confidence 467999999999999999999999999999974 554 3667788889888888875443 234799999999999
Q ss_pred HHHHhCCCceeeecCccchHhhhCCCc-eeeccccceeeeCCCCcccchhhHHHHHHhhChhHHHHHhhhcCCCCCCCCC
Q 016025 189 SLEKAGRIDCMITQNVDRLHHRAGSNP-LELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRS 267 (396)
Q Consensus 189 ~Le~~g~l~~VITQNIDgLh~kAG~~~-iElHGsl~~~~C~~C~~~~~~~~~~~~l~~~np~~~~~~~~l~~g~p~~~~s 267 (396)
+|++.|++.+||||||||||+|||.++ +|+||++++++|+.|++.++++.+..
T Consensus 77 ~L~~~~~~~~viTQNiDgLh~~AG~~~v~elHG~l~~~~C~~C~~~~~~~~~~~-------------------------- 130 (222)
T cd01413 77 ELEKQGIIKAIITQNIDGLHQRAGSKNVIELHGTLQTAYCVNCGSKYDLEEVKY-------------------------- 130 (222)
T ss_pred HHHhcCCCeEEEEeccchhhHHcCCCcEEEccCCcCcceECCCCCCcchhHHHH--------------------------
Confidence 999999999999999999999999887 99999999999999999876543200
Q ss_pred cCcccCCCCCcccccccccccCCCCcCCCCCCcccCcEEEcCCCCCHHHHHHHHHHHhhCCeEEEEccCcchhhHHHHHH
Q 016025 268 FGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSLMTMSAYRLVR 347 (396)
Q Consensus 268 ~~~~~~pd~d~~i~~~~~~~~~~iP~Cp~Cgg~LRP~VVlFGE~lp~~~~~~a~~~~~~aDllLVvGTSl~V~pa~~Lv~ 347 (396)
.....+|+||.|||.|||+||||||.+|++.++++.+++++||++|||||||+|+|++.|+.
T Consensus 131 ------------------~~~~~~p~C~~Cgg~lrP~Vv~fgE~lp~~~~~~a~~~~~~~Dl~lvvGTSl~V~p~~~l~~ 192 (222)
T cd01413 131 ------------------AKKHEVPRCPKCGGIIRPDVVLFGEPLPQALLREAIEAAKEADLFIVLGSSLVVYPANLLPL 192 (222)
T ss_pred ------------------hccCCCCcCCCCCCccCCCEEECCCCCCHHHHHHHHHHHhcCCEEEEEccCCEeccHhHHHH
Confidence 00124799999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHCCCeEEEEcCCCCCCCCcccEEEeCc
Q 016025 348 AAHEAGSTIAIVNVGETRADDLTTLKISAR 377 (396)
Q Consensus 348 ~a~~~g~~lIiIN~~~t~~d~~a~l~I~~~ 377 (396)
.|+++|+++|+||+++++.+..++++|+++
T Consensus 193 ~a~~~g~~~i~iN~~~~~~~~~~~~~i~~~ 222 (222)
T cd01413 193 IAKENGAKLVIVNADETPFDYIADLVIQDK 222 (222)
T ss_pred HHHHcCCeEEEEcCCCCCCCcceeEEEeCC
Confidence 999999999999999999999999999874
No 8
>cd01408 SIRT1 SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The nuclear SIRT1 has been shown to target the p53 tumor suppressor protein for deacetylation to suppress DNA damage, and the cytoplasmic SIRT2 homolog has been shown to target alpha-tubulin for deacetylation for the maintenance of cell integrity.
Probab=100.00 E-value=2.1e-59 Score=446.02 Aligned_cols=221 Identities=28% Similarity=0.473 Sum_probs=188.7
Q ss_pred CcEEEEECCcccccCCCCCcCCCC-cCccCC-----CCC---CChHHHhhchhhHHHHHHHHHhhhhhcccCCCCHHHHH
Q 016025 116 AKLIVLTGAGISTECGIPDYRSPN-GAYSSG-----FKP---ITHQQFVRSSRARRRYWARSYAGWRRFMAAQPNPAHFA 186 (396)
Q Consensus 116 k~IVvlTGAGISaaSGIPdFRs~~-Gl~~~~-----~~p---~~~~~f~~~~~~~~~~w~~~~~~~~~~~~a~Pn~~H~a 186 (396)
|+|||+|||||||+||||||||++ |+|+.. +.+ .+.+.|.++|..+|.|+.. +. ..+++||.+|++
T Consensus 1 k~ivvlTGAGiS~~SGIPdfR~~~~G~w~~~~~~~~~~~~~~~~~~~f~~~p~~~~~~~~~-~~----~~~a~Pn~~H~~ 75 (235)
T cd01408 1 KKIVVLVGAGISTSAGIPDFRSPGTGLYANLARYNLPYPEAMFDISYFRKNPRPFYALAKE-LY----PGQFKPSVAHYF 75 (235)
T ss_pred CcEEEEeCCccccccCCCCcCCCCCCcchhhhhccCCCHHHhcCHHHHHHChHHHHHHHHH-Hh----cCcCCCCHHHHH
Confidence 579999999999999999999999 999752 122 3566788887654443322 11 147999999999
Q ss_pred HHHHHHhCCCceeeecCccchHhhhCCC--c-eeeccccceeeeCCCCcccchhhHHHHHHhhChhHHHHHhhhcCCCCC
Q 016025 187 LASLEKAGRIDCMITQNVDRLHHRAGSN--P-LELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPG 263 (396)
Q Consensus 187 La~Le~~g~l~~VITQNIDgLh~kAG~~--~-iElHGsl~~~~C~~C~~~~~~~~~~~~l~~~np~~~~~~~~l~~g~p~ 263 (396)
|++|+++|++.+||||||||||+|||++ + +||||++++++|..|++.|+++.+...+
T Consensus 76 la~L~~~g~~~~viTQNiD~Lh~raG~~~~~V~elHG~l~~~~C~~C~~~~~~~~~~~~~-------------------- 135 (235)
T cd01408 76 IKLLEDKGLLLRNYTQNIDTLERVAGVPDDRIIEAHGSFATAHCIKCKHKYPGDWMREDI-------------------- 135 (235)
T ss_pred HHHHHhcCCceEEEEeccchHHHHcCCCccCEEEeCcCCCccccccCCCcCCHHHHHHHH--------------------
Confidence 9999999999999999999999999987 5 9999999999999999988765432111
Q ss_pred CCCCcCcccCCCCCcccccccccccCCCCcCCCCCCcccCcEEEcCCCCCHHHHHHHHHHHhhCCeEEEEccCcchhhHH
Q 016025 264 SDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSLMTMSAY 343 (396)
Q Consensus 264 ~~~s~~~~~~pd~d~~i~~~~~~~~~~iP~Cp~Cgg~LRP~VVlFGE~lp~~~~~~a~~~~~~aDllLVvGTSl~V~pa~ 343 (396)
....+|+||.|||.|||+||||||.+|++.++++.+++++||++|||||||.|+|++
T Consensus 136 -----------------------~~~~~p~C~~Cgg~lrP~Vv~FGE~lp~~~~~~~~~~~~~aDlllvvGTSl~V~pa~ 192 (235)
T cd01408 136 -----------------------FNQEVPKCPRCGGLVKPDIVFFGESLPSRFFSHMEEDKEEADLLIVIGTSLKVAPFA 192 (235)
T ss_pred -----------------------hCCCCccCCCCCCCccCcEEECCCCCCHHHHHHHHHHHhcCCEEEEECCCCeeccHH
Confidence 011379999999999999999999999988888889999999999999999999999
Q ss_pred HHHHHHHHCCCeEEEEcCCCCCCC--CcccEEEeCcHHHHHHHH
Q 016025 344 RLVRAAHEAGSTIAIVNVGETRAD--DLTTLKISARLGEILPRV 385 (396)
Q Consensus 344 ~Lv~~a~~~g~~lIiIN~~~t~~d--~~a~l~I~~~a~evL~~L 385 (396)
.|+..++ +|+++|+||++++..+ ..++++|+++|+++|++|
T Consensus 193 ~l~~~~~-~~~~~v~iN~~~~~~~~~~~~d~~~~~~~~~~l~~~ 235 (235)
T cd01408 193 SLPSRVP-SEVPRVLINREPVGHLGKRPFDVALLGDCDDGVREL 235 (235)
T ss_pred HHHHHHh-CCCcEEEEeCCCCCCCCCCCcCEEEeCCHHHHHHhC
Confidence 9998887 6899999999999988 889999999999999975
No 9
>PRK00481 NAD-dependent deacetylase; Provisional
Probab=100.00 E-value=7.1e-59 Score=444.04 Aligned_cols=232 Identities=39% Similarity=0.683 Sum_probs=205.8
Q ss_pred chHHHHhcCCcEEEEECCcccccCCCCCcCCCCcCccCCCCC---CChHHHhhchhhHHHHHHHHHhhhhhcccCCCCHH
Q 016025 107 PSIEDINQFAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKP---ITHQQFVRSSRARRRYWARSYAGWRRFMAAQPNPA 183 (396)
Q Consensus 107 ~~~~~i~~ak~IVvlTGAGISaaSGIPdFRs~~Gl~~~~~~p---~~~~~f~~~~~~~~~~w~~~~~~~~~~~~a~Pn~~ 183 (396)
.+.++|+++++|||+||||||++|||||||+.+|+|+. +.+ .+...|.++|+..|.||.+... .+.+++||++
T Consensus 5 ~l~~~i~~~~~ivi~tGAGiS~~sGip~FR~~~gl~~~-~~~~~~~~~~~~~~~p~~~w~f~~~~~~---~~~~~~Pn~~ 80 (242)
T PRK00481 5 ELAEILDKAKRIVVLTGAGISAESGIPDFRSANGLWEE-HRPEDVASPEGFARDPELVWKFYNERRR---QLLDAKPNAA 80 (242)
T ss_pred HHHHHHHhCCCEEEEeCCccccccCCCCccCCCcCccC-CCHHHhccHHHHhhCHHHHHHHHHHHHH---HhccCCCCHH
Confidence 35789999999999999999999999999999999974 554 3566777888877777754322 2338999999
Q ss_pred HHHHHHHHHhCCCceeeecCccchHhhhCCCc-eeeccccceeeeCCCCcccchhhHHHHHHhhChhHHHHHhhhcCCCC
Q 016025 184 HFALASLEKAGRIDCMITQNVDRLHHRAGSNP-LELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSP 262 (396)
Q Consensus 184 H~aLa~Le~~g~l~~VITQNIDgLh~kAG~~~-iElHGsl~~~~C~~C~~~~~~~~~~~~l~~~np~~~~~~~~l~~g~p 262 (396)
|++|++|++.|++++||||||||||++||.++ +|+||++.+++|+.|++.|..+.+.
T Consensus 81 H~~L~~L~~~~~~~~viTqNiD~L~~~aG~~~v~elHG~~~~~~C~~C~~~~~~~~~~---------------------- 138 (242)
T PRK00481 81 HRALAELEKLGKLVTVITQNIDGLHERAGSKNVIELHGSLLRARCTKCGQTYDLDEYL---------------------- 138 (242)
T ss_pred HHHHHHHHhcCCCeEEEEeccchhHHHcCCCceeeccCCcCceeeCCCCCCcChhhhc----------------------
Confidence 99999999999999999999999999999988 9999999999999999877543210
Q ss_pred CCCCCcCcccCCCCCcccccccccccCCCCcCCCCCCcccCcEEEcCCCCCHHHHHHHHHHHhhCCeEEEEccCcchhhH
Q 016025 263 GSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSLMTMSA 342 (396)
Q Consensus 263 ~~~~s~~~~~~pd~d~~i~~~~~~~~~~iP~Cp~Cgg~LRP~VVlFGE~lp~~~~~~a~~~~~~aDllLVvGTSl~V~pa 342 (396)
...+|+||.|||.|||+||||||.+|++.++++.++++++|++||||||+.|+|+
T Consensus 139 -------------------------~~~~p~C~~Cgg~lrP~Vv~fge~~~~~~~~~a~~~~~~~dl~lviGTsl~V~p~ 193 (242)
T PRK00481 139 -------------------------KPEPPRCPKCGGILRPDVVLFGEMLPELAIDEAYEALEEADLFIVIGTSLVVYPA 193 (242)
T ss_pred -------------------------cCCCCCCCCCCCccCCCeEECCCCCCHHHHHHHHHHHhcCCEEEEECCCceEcCH
Confidence 0136889999999999999999999998899999999999999999999999999
Q ss_pred HHHHHHHHHCCCeEEEEcCCCCCCCCcccEEEeCcHHHHHHHHHHhC
Q 016025 343 YRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVLDVG 389 (396)
Q Consensus 343 ~~Lv~~a~~~g~~lIiIN~~~t~~d~~a~l~I~~~a~evL~~L~~~~ 389 (396)
++++..++++|+++|+||+++++.+..+++.|.++++++|++|++.+
T Consensus 194 ~~l~~~~~~~~~~~i~iN~~~~~~~~~~~~~i~~~~~~~l~~l~~~~ 240 (242)
T PRK00481 194 AGLPYEAREHGAKTVEINLEPTPLDSLFDLVIHGKAGEVVPELVEEL 240 (242)
T ss_pred hHHHHHHHHCCCeEEEECCCCCCCCCccCEEEECCHHHHHHHHHHHh
Confidence 99999888899999999999999999999999999999999998865
No 10
>PTZ00408 NAD-dependent deacetylase; Provisional
Probab=100.00 E-value=4.2e-58 Score=438.46 Aligned_cols=224 Identities=31% Similarity=0.489 Sum_probs=191.8
Q ss_pred hcCCcEEEEECCcccccCCCCCcCCCCcCccCCCCC---CChHHHhhchhhHHHHHHHHHhhhhhcccCCCCHHHHHHHH
Q 016025 113 NQFAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKP---ITHQQFVRSSRARRRYWARSYAGWRRFMAAQPNPAHFALAS 189 (396)
Q Consensus 113 ~~ak~IVvlTGAGISaaSGIPdFRs~~Gl~~~~~~p---~~~~~f~~~~~~~~~~w~~~~~~~~~~~~a~Pn~~H~aLa~ 189 (396)
++|++|||+||||||++||||||||++|+|+. +++ .+...|.++|...|+||...... ....+++||.+|++|++
T Consensus 2 ~~~~~ivvlTGAGiS~~SGIPdFR~~~Glw~~-~~~~~~~~~~~f~~~p~~~~~f~~~~~~~-~~~~~~~Pn~~H~~L~~ 79 (242)
T PTZ00408 2 KACRCITILTGAGISAESGISTFRDGNGLWEN-HRVEDVATPDAFLRNPALVQRFYNERRRA-LLSSSVKPNKAHFALAK 79 (242)
T ss_pred CCCCeEEEEeCcchhhhhCCCcccCCCCCCCC-CChhhcCCHHHHHhCHHHHHHHHHHHHHH-hccCCCCCCHHHHHHHH
Confidence 46899999999999999999999999999974 544 47778889998888887532111 11247899999999999
Q ss_pred HHHh--CCCceeeecCccchHhhhCCCc-eeeccccceeeeCCCCcccchhhHHHHHHhhChhHHHHHhhhcCCCCCCCC
Q 016025 190 LEKA--GRIDCMITQNVDRLHHRAGSNP-LELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDR 266 (396)
Q Consensus 190 Le~~--g~l~~VITQNIDgLh~kAG~~~-iElHGsl~~~~C~~C~~~~~~~~~~~~l~~~np~~~~~~~~l~~g~p~~~~ 266 (396)
|++. +++++||||||||||++||++. +|+||++++++|+.|++.|+++..
T Consensus 80 Le~~~~~~~~~iiTQNiDgLh~~AG~~~v~elHG~~~~~~C~~C~~~~~~~~~--------------------------- 132 (242)
T PTZ00408 80 LEREYRGGKVVVVTQNVDNLHERAGSTHVLHMHGELLKVRCTATGHVFDWTED--------------------------- 132 (242)
T ss_pred HHHhhcCCcEEEEeecccchhhHcCCCcEEEecCccceEEECCCCcccCchhh---------------------------
Confidence 9986 7889999999999999999988 999999999999999987653210
Q ss_pred CcCcccCCCCCcccccccccccCCCCcCCCCC--CcccCcEEEcCC-CCCHHHHHHHHHHHhhCCeEEEEccCcchhhHH
Q 016025 267 SFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCN--GVLKPDVVFFGD-NVPKDRADKAMEAAKECDAFLVLGSSLMTMSAY 343 (396)
Q Consensus 267 s~~~~~~pd~d~~i~~~~~~~~~~iP~Cp~Cg--g~LRP~VVlFGE-~lp~~~~~~a~~~~~~aDllLVvGTSl~V~pa~ 343 (396)
+ ...+|+||.|| |.+||+|||||| .++.+.++ +++++||++|||||||.|+|++
T Consensus 133 -------------~-------~~~~p~C~~Cg~~g~lrP~vV~FGE~~~~~~~~~---~~~~~~DlllviGTSl~V~pa~ 189 (242)
T PTZ00408 133 -------------V-------VHGSSRCKCCGCVGTLRPHIVWFGEMPLYMDEIE---SVMSKTDLFVAVGTSGNVYPAA 189 (242)
T ss_pred -------------h-------hcCCCccccCCCCCCCCCCEEEcCCCCCcHHHHH---HHHHhCCEEEEEccCCccccHH
Confidence 0 01368999998 999999999999 77766555 4488999999999999999999
Q ss_pred HHHHHHHHCCCeEEEEcCCCCCCCCcccEEEeCcHHHHHHHHHHh
Q 016025 344 RLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVLDV 388 (396)
Q Consensus 344 ~Lv~~a~~~g~~lIiIN~~~t~~d~~a~l~I~~~a~evL~~L~~~ 388 (396)
+|+..|+++|+++++||++++..+..+++.|.++++++|++|++.
T Consensus 190 ~l~~~a~~~g~~vi~IN~~~~~~~~~~~~~i~g~~~~~l~~l~~~ 234 (242)
T PTZ00408 190 GFVGRAQFYGATTLELNLEEGTNYSQFDESIYGKASVIVPAWVDR 234 (242)
T ss_pred HHHHHHHHcCCeEEEECCCCCCCCccCCEEEECCHHHHHHHHHHH
Confidence 999999999999999999999988888999999999999999873
No 11
>cd01410 SIRT7 SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=100.00 E-value=6.6e-58 Score=427.71 Aligned_cols=203 Identities=39% Similarity=0.629 Sum_probs=175.7
Q ss_pred CcEEEEECCcccccCCCCCcCCCCcCccCCCCCCChHHHhhchhhHHHHHHHHHhhhhhcccCCCCHHHHHHHHHHHhCC
Q 016025 116 AKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVRSSRARRRYWARSYAGWRRFMAAQPNPAHFALASLEKAGR 195 (396)
Q Consensus 116 k~IVvlTGAGISaaSGIPdFRs~~Gl~~~~~~p~~~~~f~~~~~~~~~~w~~~~~~~~~~~~a~Pn~~H~aLa~Le~~g~ 195 (396)
|+|||+||||||++||||||||++|+|.. +++ +..+| ..+|. |+ +++||.+|++|++|++.|+
T Consensus 1 k~ivvltGAGiS~~SGIP~fR~~~Glw~~-~~~-----~~~~~---~~~~~--~~------~~~Pn~~H~~La~l~~~g~ 63 (206)
T cd01410 1 KHLVVFTGAGISTSAGIPDFRGPNGVWTL-LPE-----DKGRR---RFSWR--FR------RAEPTLTHMALVELERAGL 63 (206)
T ss_pred CcEEEEeCCcccHhhCCCcccCcCCCccc-CCc-----cccCh---HHHhh--hh------cCCCCHHHHHHHHHHHCCC
Confidence 57999999999999999999999999974 333 22233 34553 21 5899999999999999999
Q ss_pred CceeeecCccchHhhhCCC--c-eeeccccceeeeCCCCcccchhhHHHHHHhhChhHHHHHhhhcCCCCCCCCCcCccc
Q 016025 196 IDCMITQNVDRLHHRAGSN--P-LELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQ 272 (396)
Q Consensus 196 l~~VITQNIDgLh~kAG~~--~-iElHGsl~~~~C~~C~~~~~~~~~~~~l~~~np~~~~~~~~l~~g~p~~~~s~~~~~ 272 (396)
+.+||||||||||++||++ + +|+||++++++|+.|++.++.+.+.+.+
T Consensus 64 ~~~viTQNID~Lh~~AG~~~~~vielHG~~~~~~C~~C~~~~~~~~~~~~~----------------------------- 114 (206)
T cd01410 64 LKFVISQNVDGLHLRSGLPREKLSELHGNMFIEVCKSCGPEYVRDDVVETR----------------------------- 114 (206)
T ss_pred CceEEecCccchHhHcCcCcccEEEecCCcCcccCCCCCCccchHHHHHHh-----------------------------
Confidence 9999999999999999985 3 9999999999999999887654332111
Q ss_pred CCCCCcccccccccccCCCCcCCCCCCcccCcEEEcCCCCCHHHHHHHHHHHhhCCeEEEEccCcchhhHHHHHHHHHHC
Q 016025 273 RPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEA 352 (396)
Q Consensus 273 ~pd~d~~i~~~~~~~~~~iP~Cp~Cgg~LRP~VVlFGE~lp~~~~~~a~~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~ 352 (396)
.....+|+|+.|||.|||+||||||.+|+..++++.+++++||++|||||||.|+|++.|+..++++
T Consensus 115 -------------~~~~~~p~C~~Cgg~lrP~VV~FgE~lp~~~~~~a~~~~~~aDlllviGTSl~V~pa~~l~~~~~~~ 181 (206)
T cd01410 115 -------------GDKETGRRCHACGGILKDTIVDFGERLPPENWMGAAAAACRADLFLCLGTSLQVTPAANLPLKAARA 181 (206)
T ss_pred -------------hcCCCCCcCCCCcCccCCcEEECCCCCCHHHHHHHHHHHhcCCEEEEECcCceehhHHHHHHHHHhc
Confidence 0012479999999999999999999999998999999999999999999999999999999999999
Q ss_pred CCeEEEEcCCCCCCCCcccEEEeCc
Q 016025 353 GSTIAIVNVGETRADDLTTLKISAR 377 (396)
Q Consensus 353 g~~lIiIN~~~t~~d~~a~l~I~~~ 377 (396)
|+++|+||+++++.|..++++|+++
T Consensus 182 g~~vi~iN~~~~~~d~~~d~~~~~~ 206 (206)
T cd01410 182 GGRLVIVNLQPTPKDKLADLVIHGD 206 (206)
T ss_pred CCeEEEECCCCCCCCccccEEEeCC
Confidence 9999999999999999999999874
No 12
>cd01411 SIR2H SIR2H: Uncharacterized prokaryotic Sir2 homologs from several gram positive bacterial species and Fusobacteria; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=100.00 E-value=1.1e-57 Score=431.74 Aligned_cols=218 Identities=31% Similarity=0.587 Sum_probs=192.6
Q ss_pred HHHHhcCCcEEEEECCcccccCCCCCcCCCCcCccCC--CCC---CChHHHhhchhhHHHHHHHHHhhhhhcccCCCCHH
Q 016025 109 IEDINQFAKLIVLTGAGISTECGIPDYRSPNGAYSSG--FKP---ITHQQFVRSSRARRRYWARSYAGWRRFMAAQPNPA 183 (396)
Q Consensus 109 ~~~i~~ak~IVvlTGAGISaaSGIPdFRs~~Gl~~~~--~~p---~~~~~f~~~~~~~~~~w~~~~~~~~~~~~a~Pn~~ 183 (396)
.++|++|++|||+||||||++|||||||+++|+|+.. +.+ .+...|.++|+.+|.||.+.+ .+.+++||.+
T Consensus 2 ~~~i~~a~~ivv~tGAGiS~~sGIpdfR~~~G~w~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~----~~~~~~Pn~~ 77 (225)
T cd01411 2 QHILKNAKRIVFFTGAGVSTASGIPDYRSKNGLYNEIYKYSPEYLLSHDFLEREPEKFYQFVKENL----YFPDAKPNII 77 (225)
T ss_pred hHHHhhCCCEEEEECCccccccCCCCccCCCcCccCcCCCChHHeecHHHHHHCHHHHHHHHHHHh----hCCCCCCCHH
Confidence 5789999999999999999999999999999999853 444 356777888888888776532 2347899999
Q ss_pred HHHHHHHHHhCCCceeeecCccchHhhhCCCc-eeeccccceeeeCCCCcccchhhHHHHHHhhChhHHHHHhhhcCCCC
Q 016025 184 HFALASLEKAGRIDCMITQNVDRLHHRAGSNP-LELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSP 262 (396)
Q Consensus 184 H~aLa~Le~~g~l~~VITQNIDgLh~kAG~~~-iElHGsl~~~~C~~C~~~~~~~~~~~~l~~~np~~~~~~~~l~~g~p 262 (396)
|++|++|++.+ +.+||||||||||++||.++ +|+||++++++|+.|++.++++.
T Consensus 78 H~~La~L~~~~-~~~viTQNvD~Lh~~aG~~~v~elHG~~~~~~C~~C~~~~~~~~------------------------ 132 (225)
T cd01411 78 HQKMAELEKMG-LKAVITQNIDGLHQKAGSKNVVEFHGSLYRIYCTVCGKTVDWEE------------------------ 132 (225)
T ss_pred HHHHHHHHHcC-CcEEEEeccchhhhhcCCCcEEEeCCCcCeeEeCCCCCccchhh------------------------
Confidence 99999999887 89999999999999999887 99999999999999987764321
Q ss_pred CCCCCcCcccCCCCCcccccccccccCCCCcCCCCCCcccCcEEEcCCCCCHHHHHHHHHHHhhCCeEEEEccCcchhhH
Q 016025 263 GSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSLMTMSA 342 (396)
Q Consensus 263 ~~~~s~~~~~~pd~d~~i~~~~~~~~~~iP~Cp~Cgg~LRP~VVlFGE~lp~~~~~~a~~~~~~aDllLVvGTSl~V~pa 342 (396)
...+|+||.|||+|||+||||||.+|.+.++++.++++++|++||||||+.|+|+
T Consensus 133 -------------------------~~~~p~C~~Cgg~lrP~vv~fge~~~~~~~~~~~~~~~~~DlllviGTSl~v~p~ 187 (225)
T cd01411 133 -------------------------YLKSPYHAKCGGVIRPDIVLYEEMLNESVIEEAIQAIEKADLLVIVGTSFVVYPF 187 (225)
T ss_pred -------------------------cCCCCCCCCCCCEeCCCEEEcCCCCCHHHHHHHHHHHhcCCEEEEECcCCeehhH
Confidence 0136899999999999999999999999899999999999999999999999999
Q ss_pred HHHHHHHHHCCCeEEEEcCCCCCCCCcccEEEeCcHHHHH
Q 016025 343 YRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEIL 382 (396)
Q Consensus 343 ~~Lv~~a~~~g~~lIiIN~~~t~~d~~a~l~I~~~a~evL 382 (396)
++++..++ +|+++|+||+++++.+..+++.|++ +++++
T Consensus 188 ~~l~~~~~-~~~~~i~iN~~~~~~~~~~~~~~~~-~~~~~ 225 (225)
T cd01411 188 AGLIDYRQ-AGANLIAINKEPTQLDSPATLVIKD-AVKVF 225 (225)
T ss_pred HHHHHHHh-CCCeEEEECCCCCCCCcchhehhcc-hhhhC
Confidence 99998765 7999999999999999999999999 88763
No 13
>cd01412 SIRT5_Af1_CobB SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E. coli CobB; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. CobB is a bacterial sirtuin that deacetylates acetyl-CoA synthetase at an active site lysine to stimulate its enzymatic activity.
Probab=100.00 E-value=2.7e-57 Score=428.22 Aligned_cols=220 Identities=38% Similarity=0.667 Sum_probs=193.8
Q ss_pred CcEEEEECCcccccCCCCCcCCCCcCccCCCCC---CChHHHhhchhhHHHHHHHHHhhhhhcccCCCCHHHHHHHHHHH
Q 016025 116 AKLIVLTGAGISTECGIPDYRSPNGAYSSGFKP---ITHQQFVRSSRARRRYWARSYAGWRRFMAAQPNPAHFALASLEK 192 (396)
Q Consensus 116 k~IVvlTGAGISaaSGIPdFRs~~Gl~~~~~~p---~~~~~f~~~~~~~~~~w~~~~~~~~~~~~a~Pn~~H~aLa~Le~ 192 (396)
++|||+||||||++|||||||+++|+|+. +.+ .+...|.++|+..|.||.+... .+..++||.+|++|++|++
T Consensus 1 ~~ivi~tGAGiS~~sGIp~fR~~~g~~~~-~~~~~~~~~~~f~~~p~~~w~f~~~~~~---~~~~~~Pn~~H~~L~~L~~ 76 (224)
T cd01412 1 RRVVVLTGAGISAESGIPTFRDADGLWAR-FDPEELATPEAFARDPELVWEFYNWRRR---KALRAQPNPAHLALAELER 76 (224)
T ss_pred CcEEEEeCCccchhhCCCCccCcCCCcCC-CChhhcCCHHHHHHCHHHHHHHHHHHHH---HccccCCCHHHHHHHHHHh
Confidence 57999999999999999999999999974 544 3667788888877777654322 2357899999999999999
Q ss_pred hCCCceeeecCccchHhhhCCCc-eeeccccceeeeCCCCcccchhhHHHHHHhhChhHHHHHhhhcCCCCCCCCCcCcc
Q 016025 193 AGRIDCMITQNVDRLHHRAGSNP-LELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMK 271 (396)
Q Consensus 193 ~g~l~~VITQNIDgLh~kAG~~~-iElHGsl~~~~C~~C~~~~~~~~~~~~l~~~np~~~~~~~~l~~g~p~~~~s~~~~ 271 (396)
++++++||||||||||++||++. +|+||+++.++|..|++.+..+..
T Consensus 77 ~~~~~~viTqNiDgL~~~aG~~~v~e~HG~~~~~~C~~C~~~~~~~~~-------------------------------- 124 (224)
T cd01412 77 RLPNVLLITQNVDGLHERAGSRNVIELHGSLFRVRCSSCGYVGENNEE-------------------------------- 124 (224)
T ss_pred cCCCeEEEEccchHhhHHhCCCceEeeCCCcCccccCCCCCCCCcchh--------------------------------
Confidence 99899999999999999999977 999999999999999987643210
Q ss_pred cCCCCCcccccccccccCCCCcCCCCCCcccCcEEEcCCCCCHHHHHHHHHHHhhCCeEEEEccCcchhhHHHHHHHHHH
Q 016025 272 QRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHE 351 (396)
Q Consensus 272 ~~pd~d~~i~~~~~~~~~~iP~Cp~Cgg~LRP~VVlFGE~lp~~~~~~a~~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~ 351 (396)
.....+|+||.|||.|||+||||||.+|+ .++.+.++++++|++||||||+.|.|+.+++..+++
T Consensus 125 --------------~~~~~~p~C~~Cgg~lrp~Vv~fge~~p~-~~~~~~~~~~~~dl~lvlGTsl~v~p~~~l~~~~~~ 189 (224)
T cd01412 125 --------------IPEEELPRCPKCGGLLRPGVVWFGESLPL-ALLEAVEALAKADLFLVIGTSGVVYPAAGLPEEAKE 189 (224)
T ss_pred --------------hhccCCCCCCCCCCccCCceEECCCCCHH-HHHHHHHHHHcCCEEEEECcCccchhHHHHHHHHHH
Confidence 00125799999999999999999999999 789999999999999999999999999999999888
Q ss_pred CCCeEEEEcCCCCCCCCcccEEEeCcHHHHHHHHH
Q 016025 352 AGSTIAIVNVGETRADDLTTLKISARLGEILPRVL 386 (396)
Q Consensus 352 ~g~~lIiIN~~~t~~d~~a~l~I~~~a~evL~~L~ 386 (396)
+|+++|+||++++..+..+++.|+++++++|++|+
T Consensus 190 ~~~~~i~iN~~~~~~~~~~~~~i~g~~~~~l~~l~ 224 (224)
T cd01412 190 RGARVIEINPEPTPLSPIADFAFRGKAGEVLPALL 224 (224)
T ss_pred CCCeEEEECCCCCCCCCcCCEEEECCHHHHHHHhC
Confidence 99999999999999999999999999999999874
No 14
>cd01407 SIR2-fam SIR2 family of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer.
Probab=100.00 E-value=1.3e-56 Score=422.28 Aligned_cols=213 Identities=44% Similarity=0.750 Sum_probs=187.4
Q ss_pred CcEEEEECCcccccCCCCCcCCCCcCccCCCCC----CChHHHhhchhhHHHHHHHHHhhhhhcccCCCCHHHHHHHHHH
Q 016025 116 AKLIVLTGAGISTECGIPDYRSPNGAYSSGFKP----ITHQQFVRSSRARRRYWARSYAGWRRFMAAQPNPAHFALASLE 191 (396)
Q Consensus 116 k~IVvlTGAGISaaSGIPdFRs~~Gl~~~~~~p----~~~~~f~~~~~~~~~~w~~~~~~~~~~~~a~Pn~~H~aLa~Le 191 (396)
|+|||+||||||++|||||||+++|+|+. +.+ ++...|..+|+.+|.||.+.+. ..+++||.+|++|++|+
T Consensus 1 k~ivv~tGAGiS~~sGIpdfR~~~G~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~----~~~~~Pn~~H~~L~~L~ 75 (218)
T cd01407 1 KRIVVLTGAGISTESGIPDFRSPGGLWAR-LDPEELAFSPEAFRRDPELFWGFYRERRY----PLNAQPNPAHRALAELE 75 (218)
T ss_pred CcEEEEeCCccccccCCCcccCCCCcccc-CChhhccCCHHHHHHCHHHHHHHHHHhhh----hccCCCCHHHHHHHHHH
Confidence 58999999999999999999999999984 443 2666778888877777764432 45799999999999999
Q ss_pred HhCCCceeeecCccchHhhhCCCc-eeeccccceeeeCCCCcccchhhHHHHHHhhChhHHHHHhhhcCCCCCCCCCcCc
Q 016025 192 KAGRIDCMITQNVDRLHHRAGSNP-LELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGM 270 (396)
Q Consensus 192 ~~g~l~~VITQNIDgLh~kAG~~~-iElHGsl~~~~C~~C~~~~~~~~~~~~l~~~np~~~~~~~~l~~g~p~~~~s~~~ 270 (396)
++|++.+||||||||||++||+++ +|+||++..++|+.|++.++++.+...
T Consensus 76 ~~~~~~~viTQNiDgL~~~aG~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~---------------------------- 127 (218)
T cd01407 76 RKGKLKRVITQNVDGLHQRAGSPKVIELHGSLFRVRCTKCGKEYPRDELQAD---------------------------- 127 (218)
T ss_pred hcCCCeeEEEeccchhHHHcCCCCEEECcCCcCcceeCCCcCCCcHHHHhHh----------------------------
Confidence 999999999999999999999998 999999999999999998765432100
Q ss_pred ccCCCCCcccccccccccCCCCcCCCCCCcccCcEEEcCCCCCHHHHHHHHHHHhhCCeEEEEccCcchhhHHHHHHHHH
Q 016025 271 KQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSLMTMSAYRLVRAAH 350 (396)
Q Consensus 271 ~~~pd~d~~i~~~~~~~~~~iP~Cp~Cgg~LRP~VVlFGE~lp~~~~~~a~~~~~~aDllLVvGTSl~V~pa~~Lv~~a~ 350 (396)
.....+|+||.|||.|||+||||||.+|+. ++++.++++++|++||||||+.|+|+++++..++
T Consensus 128 ---------------~~~~~~p~C~~Cg~~lrP~Vv~fgE~~p~~-~~~a~~~~~~~Dl~lvlGTSl~V~p~~~l~~~~~ 191 (218)
T cd01407 128 ---------------IDREEVPRCPKCGGLLRPDVVFFGESLPEE-LDEAAEALAKADLLLVIGTSLQVYPAAGLPLYAP 191 (218)
T ss_pred ---------------hccCCCCcCCCCCCccCCCeEECCCCCcHH-HHHHHHHHhcCCEEEEeCCCcccccHHHHHHHHH
Confidence 001257999999999999999999999998 9999999999999999999999999999999999
Q ss_pred HCCCeEEEEcCCCCCCCCcccEEEeCc
Q 016025 351 EAGSTIAIVNVGETRADDLTTLKISAR 377 (396)
Q Consensus 351 ~~g~~lIiIN~~~t~~d~~a~l~I~~~ 377 (396)
++|+++|+||+++++.+..+++.|+++
T Consensus 192 ~~~~~~i~iN~~~~~~~~~~d~~~~~~ 218 (218)
T cd01407 192 ERGAPVVIINLEPTPADRKADLVILGD 218 (218)
T ss_pred HCCCeEEEECCCCCCCCccceEEEeCC
Confidence 899999999999999999999999874
No 15
>PTZ00410 NAD-dependent SIR2; Provisional
Probab=100.00 E-value=1.3e-53 Score=423.22 Aligned_cols=237 Identities=26% Similarity=0.455 Sum_probs=192.6
Q ss_pred hHHHHhc--CCcEEEEECCcccccCCCCCcCCC-CcCccCC--C---CC---CChHHHhhchhhHHHHHHHHHhhhhhcc
Q 016025 108 SIEDINQ--FAKLIVLTGAGISTECGIPDYRSP-NGAYSSG--F---KP---ITHQQFVRSSRARRRYWARSYAGWRRFM 176 (396)
Q Consensus 108 ~~~~i~~--ak~IVvlTGAGISaaSGIPdFRs~-~Gl~~~~--~---~p---~~~~~f~~~~~~~~~~w~~~~~~~~~~~ 176 (396)
++++|++ +++|||+|||||||+|||||||++ +|+|... + .| ++...|.++|..+|.||.+ +..|. .
T Consensus 20 la~~I~~~~ak~IVvlTGAGISteSGIPdFRs~~~Glw~~~~~~~~~~pe~~fs~~~f~~~P~~f~~~~r~-~~~~~--~ 96 (349)
T PTZ00410 20 LARYIERNNVTKILVMVGAGISVAAGIPDFRSPHTGIYAKLGKYNLNSPTDAFSLTLLREKPEVFYSIARE-MDLWP--G 96 (349)
T ss_pred HHHHHHhcCCCCEEEEECcccccccCCCcccCcCCCcCccccccCCCCHHHHcCHHHHHHCHHHHHHHHHH-hhccc--C
Confidence 5677887 689999999999999999999999 5999852 2 22 3556677788766655432 22222 2
Q ss_pred cCCCCHHHHHHHHHHHhCCCceeeecCccchHhhhCCCc---eeeccccceeeeCCCCcccchhhHHHHHHhhChhHHHH
Q 016025 177 AAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNP---LELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEA 253 (396)
Q Consensus 177 ~a~Pn~~H~aLa~Le~~g~l~~VITQNIDgLh~kAG~~~---iElHGsl~~~~C~~C~~~~~~~~~~~~l~~~np~~~~~ 253 (396)
+++||.+|++|+.|++.|++.+||||||||||++||++. +|+||++++++|..|++.|+.+.....
T Consensus 97 ~a~Pn~aH~aLa~Le~~G~l~~vITQNIDgLh~rAG~~~~~ViElHGsl~~~~C~~C~~~~~~~~~~~~----------- 165 (349)
T PTZ00410 97 HFQPTAVHHFIRLLADEGRLLRCCTQNIDGLERAAGVPPSLLVEAHGSFSAASCIECHTPYDIEQAYLE----------- 165 (349)
T ss_pred cCCCCHHHHHHHHHHhcCCcceEEecchhhhHhhcCCCcccEEEeccCCCeeEeCCCCCCcchhHHHHH-----------
Confidence 589999999999999999999999999999999999863 999999999999999988765422100
Q ss_pred HhhhcCCCCCCCCCcCcccCCCCCcccccccccccCCCCcCCCCCCcccCcEEEcCCCCCHHHHHHHHHHHhhCCeEEEE
Q 016025 254 IESLDYGSPGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVL 333 (396)
Q Consensus 254 ~~~l~~g~p~~~~s~~~~~~pd~d~~i~~~~~~~~~~iP~Cp~Cgg~LRP~VVlFGE~lp~~~~~~a~~~~~~aDllLVv 333 (396)
.....+|+|+.|||.|||+||||||.+|++.++ +.+++++||++|||
T Consensus 166 --------------------------------~~~~~vP~C~~CgG~lRPdVVlFGE~lp~~~~~-a~~~~~~aDllLVI 212 (349)
T PTZ00410 166 --------------------------------ARSGKVPHCSTCGGIVKPDVVFFGENLPDAFFN-VHHDIPEAELLLII 212 (349)
T ss_pred --------------------------------hhcCCCCCCCCCCCccCCcEEecCCcCCHHHHH-HHHHHHhCCEEEEE
Confidence 001247999999999999999999999998777 88999999999999
Q ss_pred ccCcchhhHHHHHHHHHHCCCeEEEEcCCCCCC-----------------------------------------------
Q 016025 334 GSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRA----------------------------------------------- 366 (396)
Q Consensus 334 GTSl~V~pa~~Lv~~a~~~g~~lIiIN~~~t~~----------------------------------------------- 366 (396)
||||+|+|++.++..+. +++++|+||++++.-
T Consensus 213 GTSL~V~Paa~l~~~a~-~~~pvviIN~e~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 291 (349)
T PTZ00410 213 GTSLQVHPFALLACVVP-KDVPRVLFNLERVGGLMFRFPTDPLTTFHADSVAKEGRSSSSSSRSSSDSSTSSSSDGYGQF 291 (349)
T ss_pred CcCCcccCHHHHHHHHh-cCCCEEEECccccCCceeeccCCccccchhhhhhhcccCccccccccccccccccccccccc
Confidence 99999999999998876 689999999875311
Q ss_pred --------CCcccEEEeCcHHHHHHHHHHhCCCC
Q 016025 367 --------DDLTTLKISARLGEILPRVLDVGSLS 392 (396)
Q Consensus 367 --------d~~a~l~I~~~a~evL~~L~~~~~l~ 392 (396)
+...|+.+.|+|++-.-.|++.||++
T Consensus 292 ~~~~~~~~~~~~d~~~~g~~~~~~~~~~~~lg~~ 325 (349)
T PTZ00410 292 GDYEADPGGVCRDIFFPGDCQESVRRLAEALGLG 325 (349)
T ss_pred cccccCccccccceeecccchHHHHHHHHHhCcH
Confidence 11345668999999888999988863
No 16
>cd00296 SIR2 SIR2 superfamily of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer. Also included in this superfamily is a group of uncharacterized Sir2-like proteins which lack certain key catalytic
Probab=100.00 E-value=2.1e-49 Score=372.40 Aligned_cols=212 Identities=42% Similarity=0.669 Sum_probs=182.4
Q ss_pred CcEEEEECCcccccCCCCCcCCCC-cCccCCCC-C--CChHHHhhchhhHHHHHHHHHhhhhhcccCCCCHHHHHHHHHH
Q 016025 116 AKLIVLTGAGISTECGIPDYRSPN-GAYSSGFK-P--ITHQQFVRSSRARRRYWARSYAGWRRFMAAQPNPAHFALASLE 191 (396)
Q Consensus 116 k~IVvlTGAGISaaSGIPdFRs~~-Gl~~~~~~-p--~~~~~f~~~~~~~~~~w~~~~~~~~~~~~a~Pn~~H~aLa~Le 191 (396)
++|||+||||||++|||||||+.+ |+|+.... . .+...|..+++..|.||.+.+. ...+++||.+|++|++|+
T Consensus 1 k~iv~~tGAGiS~~sGiP~fr~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~P~~~H~~l~~l~ 77 (222)
T cd00296 1 KRVVVFTGAGISTESGIPDFRGLGTGLWTRLDPEELAFSPEAFRRDPELFWLFYKERRY---TPLDAKPNPAHRALAELE 77 (222)
T ss_pred CCEEEEeCCccccccCCCCccccccchhhcCCcccccCCHHHHHHCHHHHHHHHHHHHh---hhCcCCCCHHHHHHHHHH
Confidence 579999999999999999999999 99985221 1 2566777777776666654322 244799999999999999
Q ss_pred HhCCCceeeecCccchHhhhCCC--c-eeeccccceeeeCCCCcccchhhHHHHHHhhChhHHHHHhhhcCCCCCCCCCc
Q 016025 192 KAGRIDCMITQNVDRLHHRAGSN--P-LELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSF 268 (396)
Q Consensus 192 ~~g~l~~VITQNIDgLh~kAG~~--~-iElHGsl~~~~C~~C~~~~~~~~~~~~l~~~np~~~~~~~~l~~g~p~~~~s~ 268 (396)
+.+++.+|||||||+||++||++ . +|+||++...+|..|++.+++..+..
T Consensus 78 ~~~~~~~iiTqNiD~L~~~ag~~~~~v~~lHG~~~~~~C~~C~~~~~~~~~~~--------------------------- 130 (222)
T cd00296 78 RKGKLKRIITQNVDGLHERAGSRRNRVIELHGSLDRVRCTSCGKEYPRDEVLE--------------------------- 130 (222)
T ss_pred HcCCCceEEecChHHHHHHhCCCcCcEEEecCCCCccEECCCCCCcchhhhhh---------------------------
Confidence 99999999999999999999998 4 99999999999999998776432210
Q ss_pred CcccCCCCCcccccccccccCCCCcCCCCCCcccCcEEEcCCCCCHHHHHHHHHHHhhCCeEEEEccCcchhhHHHHHHH
Q 016025 269 GMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSLMTMSAYRLVRA 348 (396)
Q Consensus 269 ~~~~~pd~d~~i~~~~~~~~~~iP~Cp~Cgg~LRP~VVlFGE~lp~~~~~~a~~~~~~aDllLVvGTSl~V~pa~~Lv~~ 348 (396)
...+|+||.|||.|||+|++|||.+|+..+.++.+++.++|++|+|||||.|+|+.+++..
T Consensus 131 -------------------~~~~p~C~~C~~~l~p~v~~fge~~~~~~~~~~~~~~~~~d~llviGtSl~v~~~~~l~~~ 191 (222)
T cd00296 131 -------------------REKPPRCPKCGGLLRPDVVDFGEALPKEWFDRALEALLEADLVLVIGTSLTVYPAARLLLR 191 (222)
T ss_pred -------------------ccCCCCCCCCCCcccCceEECCCCCCHHHHHHHHHHHhcCCEEEEECCCccccCHHHHHHH
Confidence 0247999999999999999999999998889999999999999999999999999999999
Q ss_pred HHHCCCeEEEEcCCCCCCC--CcccEEEeC
Q 016025 349 AHEAGSTIAIVNVGETRAD--DLTTLKISA 376 (396)
Q Consensus 349 a~~~g~~lIiIN~~~t~~d--~~a~l~I~~ 376 (396)
+.++|+++++||++++..+ ..+++.+.+
T Consensus 192 ~~~~~~~~~~in~~~~~~~~~~~~~~~~~~ 221 (222)
T cd00296 192 APERGAPVVIINREPTPADALKKADLVILG 221 (222)
T ss_pred HHHCCCcEEEECCCCCCCCCCCcceEEEeC
Confidence 9889999999999999998 778887765
No 17
>PF02146 SIR2: Sir2 family; InterPro: IPR003000 These sequences represent the Sirtuin (Sir2-related) family of NAD+-dependent deacetylases. This family of enzymes is broadly conserved from bacteria to humans. In yeast, Sir2 proteins form complexes with other proteins to silence chromatin by accessing histones and deacetylating them. Sir2 proteins have been proposed to play a role in silencing, chromosome stability and ageing []. The bacterial enzyme CobB, an homologue of Sir2, is a phosphoribosyltransferase []. An in vitro ADP ribosyltransferase activity has also been associated with human members of this family []. Sir2-like enzymes employ NAD+ as a cosubstrate in deacetylation reactions [] and catalyse a reaction in which the cleavage of NAD(+)and histone and/or protein deacetylation are coupled to the formation of O-acetyl-ADP-ribose, a novel metabolite. The dependence of the reaction on both NAD(+) and the generation of this potential second messenger offers new clues to understanding the function and regulation of nuclear, cytoplasmic and mitochondrial Sir2-like enzymes []. Silent Information Regulator protein of Saccharomyces cerevisiae (Sir2) is one of several factors critical for silencing at least three loci. Among them, it is unique because it silences the rDNA as well as the mating type loci and telomeres []. Sir2 interacts in a complex with itself and with Sir3 and Sir4, two proteins that are able to interact with nucleosomes. In addition Sir2 also interacts with ubiquitination factors and/or complexes []. Homologues of Sir2 share a core domain including the GAG and NID motifs and a putative C4 Zinc finger. The regions containing these three conserved motifs are individually essential for Sir2 silencing function, as are the four cysteins []. In addition, the conserved residues HG next to the putative Zn finger have been shown to be essential for the ADP ribosyltransferase activity []. ; GO: 0008270 zinc ion binding, 0070403 NAD+ binding, 0006476 protein deacetylation; PDB: 1S5P_A 3PKI_E 3PKJ_F 3K35_A 1ICI_A 1M2K_A 1M2G_A 1M2N_B 1M2H_A 1M2J_A ....
Probab=100.00 E-value=3.3e-49 Score=360.64 Aligned_cols=173 Identities=42% Similarity=0.778 Sum_probs=131.1
Q ss_pred CCcccccCCCCCcCC-CCcCccCCCCC---CChHHHhhchhhHHHHHHHHHhhhhhcccCCCCHHHHHHHHHHHhCCCce
Q 016025 123 GAGISTECGIPDYRS-PNGAYSSGFKP---ITHQQFVRSSRARRRYWARSYAGWRRFMAAQPNPAHFALASLEKAGRIDC 198 (396)
Q Consensus 123 GAGISaaSGIPdFRs-~~Gl~~~~~~p---~~~~~f~~~~~~~~~~w~~~~~~~~~~~~a~Pn~~H~aLa~Le~~g~l~~ 198 (396)
|||||++|||||||| ++|+|+. +++ .+...|.++|...|..|.+.+..+ ...+++||.+|++|++|++.|++.+
T Consensus 1 GAGiS~~SGIpdfR~~~~Glw~~-~~~~~l~~~~~~~~~~~~~~~~f~~~~~~~-~~~~a~Pn~~H~~La~L~~~g~~~~ 78 (178)
T PF02146_consen 1 GAGISTASGIPDFRSDPDGLWTK-YKPEELATPEAFFSDPEFVWEKFYRFRRKV-ISKDAEPNPGHRALAELEKKGKLKR 78 (178)
T ss_dssp -GGGGGGGT--SSSSTTSCHHHH-CHHHHHSSHHHHHHHHHHHHHHHHHHHHHH-CTCTS---HHHHHHHHHHHTTSEEE
T ss_pred CCccchhhCCCccccCCCCccee-eeccccccccccccccchhhhHHHHHhhhh-ccccCCCChhHHHHHHHHHhhhhcc
Confidence 999999999999999 9999984 332 345566666665555222222111 1128999999999999999999999
Q ss_pred eeecCccchHhhhCCCc-eeeccccceeeeCCCCcccchhhHHHHHHhhChhHHHHHhhhcCCCCCCCCCcCcccCCCCC
Q 016025 199 MITQNVDRLHHRAGSNP-LELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQRPDGD 277 (396)
Q Consensus 199 VITQNIDgLh~kAG~~~-iElHGsl~~~~C~~C~~~~~~~~~~~~l~~~np~~~~~~~~l~~g~p~~~~s~~~~~~pd~d 277 (396)
||||||||||++||+++ +||||+++.++|..|++.+..+.+.+.+.
T Consensus 79 viTQNIDgLh~~AG~~~vielHG~l~~~~C~~C~~~~~~~~~~~~~~--------------------------------- 125 (178)
T PF02146_consen 79 VITQNIDGLHQKAGSPKVIELHGSLFRLRCSKCGKEYDREDIVDSID--------------------------------- 125 (178)
T ss_dssp EEES-SSSHHHHTTESCEEETTEEEEEEEETTTSBEEEGHHHHHHHH---------------------------------
T ss_pred ceecccchhhhcccchhhHHHHhhhceeeecCCCccccchhhccccc---------------------------------
Confidence 99999999999999999 99999999999999999987654432210
Q ss_pred cccccccccccCCCCcCCCCCCcccCcEEEcCCCCCHHHHHHHHHHHhhCCeEEEEccCcchhh
Q 016025 278 IEIDEKFWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSLMTMS 341 (396)
Q Consensus 278 ~~i~~~~~~~~~~iP~Cp~Cgg~LRP~VVlFGE~lp~~~~~~a~~~~~~aDllLVvGTSl~V~p 341 (396)
....|+||.||+.|||+||||||.+| +.+..+.+++++||++|||||||+|+|
T Consensus 126 ----------~~~~~~C~~C~~~lrp~vv~fgE~~~-~~~~~~~~~~~~~Dl~lviGTSl~V~P 178 (178)
T PF02146_consen 126 ----------EEEPPRCPKCGGLLRPDVVLFGESLP-EEIEEAIEDAEEADLLLVIGTSLQVYP 178 (178)
T ss_dssp ----------TTSSCBCTTTSCBEEEEE--BTSB-S-HHHHHHHHHHHH-SEEEEESS-STSTT
T ss_pred ----------ccccccccccCccCCCCeeecCCCCH-HHHHHHHHHHHcCCEEEEEccCcEEEC
Confidence 11467999999999999999999999 778999999999999999999999997
No 18
>KOG2684 consensus Sirtuin 5 and related class III sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=8.2e-47 Score=374.02 Aligned_cols=239 Identities=26% Similarity=0.470 Sum_probs=192.0
Q ss_pred chHHHHhcCCcEEEEECCcccccCCCCCcCCCCcCccCCCCC--------CChHHHhhchhhHHHHHHHHHhhhhhcccC
Q 016025 107 PSIEDINQFAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKP--------ITHQQFVRSSRARRRYWARSYAGWRRFMAA 178 (396)
Q Consensus 107 ~~~~~i~~ak~IVvlTGAGISaaSGIPdFRs~~Gl~~~~~~p--------~~~~~f~~~~~~~~~~w~~~~~~~~~~~~a 178 (396)
...+.++.||+|||+||||||+++|||||||.+|+|+.-..+ +++..|..+|..++.|-... .-...
T Consensus 80 ~~~~~l~kaKrIvVlTGAGVSvs~GIPDFRSs~G~ys~l~~~~l~sp~~mFd~~~fr~d~~~F~~~a~~l-----~~~~~ 154 (412)
T KOG2684|consen 80 DFVKLLKKAKRIVVLTGAGVSVSAGIPDFRSSEGIYSKLKAPDLPSPQAMFDISYFRDDPSIFYRFAREL-----KPPSN 154 (412)
T ss_pred HHHHHHHhcCeEEEEeCCceeeecCCCCccccccHHHHhhcccCCCHHHhccchhhhcccHHHHHHHHHh-----cCCcc
Confidence 345778899999999999999999999999999999852221 23444444443222221111 12355
Q ss_pred CCCHHHHHHHHHHHhCCCceeeecCccchHhhhCCCc---eeeccccceeeeCCCCcccchhhHHHHHHhhChhHHHHHh
Q 016025 179 QPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNP---LELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIE 255 (396)
Q Consensus 179 ~Pn~~H~aLa~Le~~g~l~~VITQNIDgLh~kAG~~~---iElHGsl~~~~C~~C~~~~~~~~~~~~l~~~np~~~~~~~ 255 (396)
.|++.|.+|+.|+++||+.++||||||||+++||... +++||++....|..|+..++.+.+.+.+
T Consensus 155 ~ps~~H~Fi~~L~~~gkLlR~YTQNID~LE~~aGl~~~~lVq~HGSf~t~sCt~C~~k~~~~~~~~~~------------ 222 (412)
T KOG2684|consen 155 NPSAFHEFIKLLEKKGKLLRNYTQNIDGLERKAGLSTNKLVQCHGSFKTASCTKCGYKKPFEELREDI------------ 222 (412)
T ss_pred CCchHHHHHHHHHhcCceeEEeecccchhhhccCCCcCceEEeccccceeeecccccccChHHHHHHH------------
Confidence 6999999999999999999999999999999999876 9999999999999999988765332111
Q ss_pred hhcCCCCCCCCCcCcccCCCCCcccccccccccCCCCcCCCCCC------------------cccCcEEEcCCCCCHHHH
Q 016025 256 SLDYGSPGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNG------------------VLKPDVVFFGDNVPKDRA 317 (396)
Q Consensus 256 ~l~~g~p~~~~s~~~~~~pd~d~~i~~~~~~~~~~iP~Cp~Cgg------------------~LRP~VVlFGE~lp~~~~ 317 (396)
....+|.||.|.+ .|||+||||||.+|+...
T Consensus 223 -------------------------------~~~~vp~CP~C~~~~~~r~~~g~r~~~~~vgvlrP~IvffgE~lP~~~~ 271 (412)
T KOG2684|consen 223 -------------------------------RNQEVPVCPDCEGKNEKRRGAGKRCESEGVGVLRPDIVFFGENLPDSFH 271 (412)
T ss_pred -------------------------------hcCcCccCcccccccccccCccccccccCccccccceEEecCCCChHHH
Confidence 1125789999965 999999999999999988
Q ss_pred HHHHHHHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCCCCCCCcccEEEeCcHHHHHHHHHHhCCCCCCC
Q 016025 318 DKAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVLDVGSLSIPA 395 (396)
Q Consensus 318 ~~a~~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~~t~~d~~a~l~I~~~a~evL~~L~~~~~l~~p~ 395 (396)
.........+|++|||||||.|+|+++++....+ ..+.|.||.++-+ ...+++.+.++|+++...+...+|..+|.
T Consensus 272 ~~~~~d~d~~DllIviGTSLKV~pV~~iv~~~~~-~vpqIliNr~~v~-h~efd~~ll~~CD~v~~~l~~~~g~~~~~ 347 (412)
T KOG2684|consen 272 IGVGADLDECDLLIVIGTSLKVRPVAEIVKSFPA-KVPQILINRDPVP-HAEFDVELLGDCDDVIRLLCQKCGWLKPL 347 (412)
T ss_pred hhhhccccccceEEEeCCccccccHHHHHhhhcc-cCcEEEecCcccc-ccccChhhccchHHHHHHHHhhccccchH
Confidence 7777778888999999999999999999988754 5689999998443 45667888899999999999999988764
No 19
>KOG1905 consensus Class IV sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=3.1e-47 Score=362.29 Aligned_cols=233 Identities=35% Similarity=0.576 Sum_probs=195.9
Q ss_pred chHHHHhcCCcEEEEECCcccccCCCCCcCCCCcCccCCCCCCChHHHhhchhhHHHHHHHHHhhhhhcccCCCCHHHHH
Q 016025 107 PSIEDINQFAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVRSSRARRRYWARSYAGWRRFMAAQPNPAHFA 186 (396)
Q Consensus 107 ~~~~~i~~ak~IVvlTGAGISaaSGIPdFRs~~Gl~~~~~~p~~~~~f~~~~~~~~~~w~~~~~~~~~~~~a~Pn~~H~a 186 (396)
..+++|++++++||+|||||||+||||||||++|.|+..-+... .| .-.|..|.|+.+|++
T Consensus 47 elA~li~~sk~lvv~tGAGISTaa~IPDfRGp~GVWTL~~kG~~--~~-----------------~~df~~ArPt~THma 107 (353)
T KOG1905|consen 47 ELAQLIQQSKHLVVYTGAGISTAAGIPDFRGPQGVWTLQQKGKD--KF-----------------GVDFSEARPTVTHMA 107 (353)
T ss_pred HHHHHHhhCCcEEEEeCCccccccCCCCccCCCceeehhhcCcc--cc-----------------CCchhhcCCcchHHH
Confidence 34678999999999999999999999999999999984211100 00 012457999999999
Q ss_pred HHHHHHhCCCceeeecCccchHhhhCCCc---eeeccccceeeeCCCCcccchhhHHHHHHhhChhHHHHHhhhcCCCCC
Q 016025 187 LASLEKAGRIDCMITQNVDRLHHRAGSNP---LELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPG 263 (396)
Q Consensus 187 La~Le~~g~l~~VITQNIDgLh~kAG~~~---iElHGsl~~~~C~~C~~~~~~~~~~~~l~~~np~~~~~~~~l~~g~p~ 263 (396)
|.+|++.|.+++||||||||||.|+|++. +|+|||++-.+|.+|...|.++.+.+.+
T Consensus 108 i~~Lhr~gll~~viSQNvDGLhlrsGlPr~~LsElHGNmfiEvC~sC~~~yvr~~~v~t~-------------------- 167 (353)
T KOG1905|consen 108 IVALHRAGLLKHVISQNVDGLHLRSGLPREKLSELHGNMFIEVCKSCRPEYVRDRVVDTV-------------------- 167 (353)
T ss_pred HHHHHHcchhhhhhhccccchhhccCCCHHHHHHHhcchHHHHhhhhcccceehhheeec--------------------
Confidence 99999999999999999999999999997 9999999999999999988776442211
Q ss_pred CCCCcCcccCCCCCcccccccccccCCCC---cCCCCCCcccCcEEEcCCCCCHHHHHHHHHHHhhCCeEEEEccCcchh
Q 016025 264 SDRSFGMKQRPDGDIEIDEKFWEEDFHIP---TCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSLMTM 340 (396)
Q Consensus 264 ~~~s~~~~~~pd~d~~i~~~~~~~~~~iP---~Cp~Cgg~LRP~VVlFGE~lp~~~~~~a~~~~~~aDllLVvGTSl~V~ 340 (396)
++ .+.+ +.-..- +|..|-|.||..+.-+...+|...|+.|.++.++||++|++||||++.
T Consensus 168 -----gl--~at~----------R~ct~~k~~~~rscrg~l~d~~ldwe~~lpln~l~~a~~a~~~Ad~~lcLGTSLqI~ 230 (353)
T KOG1905|consen 168 -----GL--KATG----------RHCTGRKCRKCRSCRGTLRDFGLDWEDELPLNDLDRATKAAKRADLILCLGTSLQIL 230 (353)
T ss_pred -----cc--cccc----------ccccccccccccccccchhhccccccccCCchhhHHHHHHhhhcceEEEeccceEee
Confidence 00 0000 011122 355666777888887778899888999999999999999999999999
Q ss_pred hHHHHHHHHHHCCCeEEEEcCCCCCCCCcccEEEeCcHHHHHHHHHHhCCCCCCC
Q 016025 341 SAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVLDVGSLSIPA 395 (396)
Q Consensus 341 pa~~Lv~~a~~~g~~lIiIN~~~t~~d~~a~l~I~~~a~evL~~L~~~~~l~~p~ 395 (396)
|...++..+.++|+++++||+++|+-|..+++.|++++++||..|++.||++||+
T Consensus 231 p~g~lpl~~~k~g~K~~ivNlQ~T~hDk~A~l~Ihg~vd~Vm~~lm~~LgveIp~ 285 (353)
T KOG1905|consen 231 PKGNLPLKMKKRGGKIVIVNLQWTPHDKIANLKIHGKVDLVMASLMELLGVEIPA 285 (353)
T ss_pred eCCCcchhHhccCceEEEEeCccCcccchhheeehhhHHHHHHHHHHHhCCCCCc
Confidence 9999999999999999999999999999999999999999999999999999996
No 20
>KOG2682 consensus NAD-dependent histone deacetylases and class I sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=1.4e-44 Score=335.04 Aligned_cols=234 Identities=25% Similarity=0.425 Sum_probs=191.3
Q ss_pred HHHHhc--CCcEEEEECCcccccCCCCCcCCCC-cCccCC--CC---C---CChHHHhhchhhHHHHHHHHHhhhhhccc
Q 016025 109 IEDINQ--FAKLIVLTGAGISTECGIPDYRSPN-GAYSSG--FK---P---ITHQQFVRSSRARRRYWARSYAGWRRFMA 177 (396)
Q Consensus 109 ~~~i~~--ak~IVvlTGAGISaaSGIPdFRs~~-Gl~~~~--~~---p---~~~~~f~~~~~~~~~~w~~~~~~~~~~~~ 177 (396)
++.++. .++|+|..||||||++|||||||++ |+|.+. |+ | +....|.++|..++.. ++.. +-.+
T Consensus 28 A~~mks~~~~rVi~mVGAGISTsaGIPDFRSP~tGlY~NLqr~~LPYpEAiFel~yF~~nP~PF~tL-AkEL----yPgn 102 (314)
T KOG2682|consen 28 ARLMKSERCRRVIVMVGAGISTSAGIPDFRSPGTGLYDNLQRYHLPYPEAIFELSYFKKNPEPFFTL-AKEL----YPGN 102 (314)
T ss_pred HHHHhhCCcceEEEEecCccccccCCCCCCCCCchhhhhHHHhcCCChhhhhccHHhhcCCchHHHH-HHHh----CCCC
Confidence 455554 7899999999999999999999997 999852 22 1 3456677777643221 2211 1237
Q ss_pred CCCCHHHHHHHHHHHhCCCceeeecCccchHhhhCCCc---eeeccccceeeeC-CCCcccchhhHHHHHHhhChhHHHH
Q 016025 178 AQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNP---LELHGTVYTVVCL-DCGFSFCRDLFQDQVKALNPKWAEA 253 (396)
Q Consensus 178 a~Pn~~H~aLa~Le~~g~l~~VITQNIDgLh~kAG~~~---iElHGsl~~~~C~-~C~~~~~~~~~~~~l~~~np~~~~~ 253 (396)
.+||.+|++|+.|.++|.+.++||||||+|++.||.+. +|.||++...+|. .|++.|+.+.+...+.
T Consensus 103 fkPt~~HYflrLl~DK~lL~r~YTQNIDtLER~aGv~d~~lvEAHGtFa~s~Ci~~C~~~yp~e~~ka~i~--------- 173 (314)
T KOG2682|consen 103 FKPTITHYFLRLLHDKGLLLRCYTQNIDTLERIAGVPDEDLVEAHGTFATSHCISSCRHEYPLEWMKAKIM--------- 173 (314)
T ss_pred cCchhHHHHHHHHccccHHHHHHhccchHHHHhcCCCHHHHHHhccceeeeeehhhhcCcCCHHHHHHHHH---------
Confidence 89999999999999999999999999999999999986 9999999999999 5999998665432210
Q ss_pred HhhhcCCCCCCCCCcCcccCCCCCcccccccccccCCCCcCCCCCCcccCcEEEcCCCCCHHHHHHHHHHHhhCCeEEEE
Q 016025 254 IESLDYGSPGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVL 333 (396)
Q Consensus 254 ~~~l~~g~p~~~~s~~~~~~pd~d~~i~~~~~~~~~~iP~Cp~Cgg~LRP~VVlFGE~lp~~~~~~a~~~~~~aDllLVv 333 (396)
...+|+|+.|+|.+||+||||||.+|...++..+.....+|++|||
T Consensus 174 ----------------------------------~~~vpkC~vC~~lVKP~IVFfGE~LP~rF~e~~~~D~~~~dl~lV~ 219 (314)
T KOG2682|consen 174 ----------------------------------SEVVPKCEVCQGLVKPDIVFFGESLPARFFECMQSDFLKVDLLLVM 219 (314)
T ss_pred ----------------------------------hccCCCCchhhccccccEEEecCCccHHHHHHHhhcccccceEEEe
Confidence 1258999999999999999999999999888888888899999999
Q ss_pred ccCcchhhHHHHHHHHHHCCCeEEEEcCCCCC-C---CCcccEEEeCcHHHHHHHHHHhCCC
Q 016025 334 GSSLMTMSAYRLVRAAHEAGSTIAIVNVGETR-A---DDLTTLKISARLGEILPRVLDVGSL 391 (396)
Q Consensus 334 GTSl~V~pa~~Lv~~a~~~g~~lIiIN~~~t~-~---d~~a~l~I~~~a~evL~~L~~~~~l 391 (396)
||||.|+|+++|++.++ +..+-+.||.+... . ....|+-+.++|++....|++.||-
T Consensus 220 GTSL~V~PFAsLpe~vp-~~v~RlLiNre~~Gp~~~~~r~rDv~~lgd~d~~~eaLvelLGW 280 (314)
T KOG2682|consen 220 GTSLQVQPFASLPEKVP-LSVPRLLINREKAGPFLGMIRYRDVAWLGDCDQGVEALVELLGW 280 (314)
T ss_pred ccceeeeecccchhhhh-hcCceeEecccccCccccCcccccchhhccHHHHHHHHHHHhCc
Confidence 99999999999999876 46788999998753 1 1236788999999999999988774
No 21
>cd01406 SIR2-like Sir2-like: Prokaryotic group of uncharacterized Sir2-like proteins which lack certain key catalytic residues and conserved zinc binding cysteines; and are members of the SIR2 superfamily of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation.
Probab=98.79 E-value=3.7e-08 Score=93.99 Aligned_cols=96 Identities=21% Similarity=0.299 Sum_probs=54.7
Q ss_pred CcEEEEECCcccccCCCCCcCCC-CcCccCC---CCC-----CChHHHhhchh-hHHHHHHHHHh----hhh-hcccCCC
Q 016025 116 AKLIVLTGAGISTECGIPDYRSP-NGAYSSG---FKP-----ITHQQFVRSSR-ARRRYWARSYA----GWR-RFMAAQP 180 (396)
Q Consensus 116 k~IVvlTGAGISaaSGIPdFRs~-~Gl~~~~---~~p-----~~~~~f~~~~~-~~~~~w~~~~~----~~~-~~~~a~P 180 (396)
+++|++.|||+|+++|+|++++= ..++... ... .....+..-.+ ....++..... ... .....+|
T Consensus 1 g~lvlFiGAG~S~~~glP~W~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (242)
T cd01406 1 GRVVIFVGAGVSVSSGLPDWKTLLDEIASELGLEIDGYSVEAKDENDYLELAELLEKEFGTIGIKINAVLEEKTRPDFEP 80 (242)
T ss_pred CCEEEEecCccccccCCCChHHHHHHHHHHcCCccchhhccccchhhHHHHHHHHHHHhccchhhhHHHHHhccCCCCCC
Confidence 47999999999999999998753 1122110 000 00000000000 00001100000 001 1236789
Q ss_pred CHHHHHHHHHHHhCC-CceeeecCccchHhhh
Q 016025 181 NPAHFALASLEKAGR-IDCMITQNVDRLHHRA 211 (396)
Q Consensus 181 n~~H~aLa~Le~~g~-l~~VITQNIDgLh~kA 211 (396)
+..|.+|++|...+. ...|||+|.|.|.++|
T Consensus 81 ~~~h~~i~~l~~~~~~~~~iiTTNyD~llE~a 112 (242)
T cd01406 81 SPLHELLLRLFINNEGDVIIITTNYDRLLETA 112 (242)
T ss_pred CHHHHHHHhchhccCCceEEEEcchHHHHHHH
Confidence 999999999986653 5689999999999988
No 22
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=95.68 E-value=0.012 Score=50.90 Aligned_cols=67 Identities=18% Similarity=0.289 Sum_probs=47.9
Q ss_pred HHHHHHHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCCCCCCC--cccEEEeCcHHHHHHHH
Q 016025 318 DKAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRV 385 (396)
Q Consensus 318 ~~a~~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~~t~~d~--~a~l~I~~~a~evL~~L 385 (396)
..+.+.+++||++|++|+++.-........ ......++|.|+.++..... ..++.|.+|+..+|.+|
T Consensus 69 ~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~-~~~~~~~~I~I~~d~~~~~~~~~~~~~i~~d~~~~l~~L 137 (137)
T PF00205_consen 69 PAANEALEQADLVLAIGTRLSDFNTYGFSP-AFNPDAKIIQIDPDPAEIGKNYPPDVAIVGDIKAFLRAL 137 (137)
T ss_dssp HHHHHHHHHSSEEEEESSSSSTTTTTTTTG-CSTTTSEEEEEESSGGGTTSSSEESEEEESHHHHHHHHH
T ss_pred HHHHHHhcCCCEEEEECCCCcccccccccc-ccCCCCEEEEEECCHHHhCCCCCCCEEEEECHHHHhhCC
Confidence 345677899999999999985533222111 11113489999999887654 46889999999999876
No 23
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=93.29 E-value=0.11 Score=55.73 Aligned_cols=70 Identities=14% Similarity=0.245 Sum_probs=50.9
Q ss_pred HHHHHHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCCCCCCC--cccEEEeCcHHHHHHHHHHhCC
Q 016025 319 KAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVGS 390 (396)
Q Consensus 319 ~a~~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~~t~~d~--~a~l~I~~~a~evL~~L~~~~~ 390 (396)
.+.+.+++||++|+|||++..+........ ..++++|.||.++..... ..++.|.+|+.++|..|.+.++
T Consensus 265 ~~~~~l~~aDlvl~vG~~~~~~~~~~~~~~--~~~~~~i~id~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~l~ 336 (574)
T PRK07979 265 EANMTMHNADVIFAVGVRFDDRTTNNLAKY--CPNATVLHIDIDPTSISKTVTADIPIVGDARQVLEQMLELLS 336 (574)
T ss_pred HHHHHHHhCCEEEEeCCCCcccccCChhhc--CCCCeEEEEECCHHHhCCcccCCeEEecCHHHHHHHHHHhhh
Confidence 355678899999999999876543222111 224689999998865543 4678999999999999987553
No 24
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=93.29 E-value=0.1 Score=56.07 Aligned_cols=70 Identities=14% Similarity=0.191 Sum_probs=50.8
Q ss_pred HHHHHHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCCCCCCC--cccEEEeCcHHHHHHHHHHhCC
Q 016025 319 KAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVGS 390 (396)
Q Consensus 319 ~a~~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~~t~~d~--~a~l~I~~~a~evL~~L~~~~~ 390 (396)
.+.+.+++||++|+||+++..+........ ..+.++|.||.++..... ..++.|.+|+.++|..|++.+.
T Consensus 265 ~~~~~~~~aD~vl~vG~~~~~~~~~~~~~~--~~~~~~i~id~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~l~ 336 (572)
T PRK08979 265 EANMAMHNADLIFGIGVRFDDRTTNNLEKY--CPNATILHIDIDPSSISKTVRVDIPIVGSADKVLDSMLALLD 336 (572)
T ss_pred HHHHHHHhCCEEEEEcCCCCccccCchhhc--CCCCeEEEEECCHHHhCCccCCceEEecCHHHHHHHHHHhhh
Confidence 455677899999999999876543222111 225689999998765443 4688999999999999987653
No 25
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=93.15 E-value=0.12 Score=56.08 Aligned_cols=70 Identities=14% Similarity=0.252 Sum_probs=50.3
Q ss_pred HHHHHHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCCCCCCC--cccEEEeCcHHHHHHHHHHhCC
Q 016025 319 KAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVGS 390 (396)
Q Consensus 319 ~a~~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~~t~~d~--~a~l~I~~~a~evL~~L~~~~~ 390 (396)
.+.+.+++||++|+|||++.......+... ..++++|.||.++..... ..++.|.+|+..+|.+|++.+.
T Consensus 283 ~~~~~l~~aDlvL~vG~~~~~~~~~~~~~~--~~~~~~i~id~d~~~ig~~~~~~~~i~~D~~~~l~~L~~~l~ 354 (616)
T PRK07418 283 YANFAVTECDLLIAVGARFDDRVTGKLDEF--ASRAKVIHIDIDPAEVGKNRRPDVPIVGDVRKVLVKLLERSL 354 (616)
T ss_pred HHHHHHHhCCEEEEEcCCCCccccCChhhc--CCCCeEEEEeCCHHHhCCccCCCeEEecCHHHHHHHHHHhhh
Confidence 345677899999999999865332212111 235789999988765433 4678999999999999987653
No 26
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=93.09 E-value=0.13 Score=55.28 Aligned_cols=69 Identities=16% Similarity=0.212 Sum_probs=50.6
Q ss_pred HHHHHHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCCCCCCC--cccEEEeCcHHHHHHHHHHhC
Q 016025 319 KAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVG 389 (396)
Q Consensus 319 ~a~~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~~t~~d~--~a~l~I~~~a~evL~~L~~~~ 389 (396)
.+.+.+++||++|+||+++..+........ ..++++|.||.++..... ..++.|.+|+.++|..|++.+
T Consensus 265 ~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~--~~~~~~I~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l 335 (574)
T PRK06882 265 EANNAMHESDLILGIGVRFDDRTTNNLAKY--CPNAKVIHIDIDPTSISKNVPAYIPIVGSAKNVLEEFLSLL 335 (574)
T ss_pred HHHHHHHhCCEEEEECCCCCccccCchhhc--CCCCeEEEEECCHHHhcCccCCceEEecCHHHHHHHHHHHh
Confidence 355678899999999999876553322211 225689999988765443 467899999999999998755
No 27
>PRK05858 hypothetical protein; Provisional
Probab=92.77 E-value=0.25 Score=52.76 Aligned_cols=79 Identities=15% Similarity=0.177 Sum_probs=55.1
Q ss_pred cCCCCCHHHHHHHHHHHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCCCCCCC--cccEEEeCcHHHHHHHH
Q 016025 308 FGDNVPKDRADKAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRV 385 (396)
Q Consensus 308 FGE~lp~~~~~~a~~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~~t~~d~--~a~l~I~~~a~evL~~L 385 (396)
|.|..|...-..+.+.++++|++|+||+++........ . ..+.++|.|+.++..... ..++.|.+|+.++|+.|
T Consensus 244 ~~~~hpl~~~~~~~~~l~~aD~vl~vG~~~~~~~~~~~--~--~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L 319 (542)
T PRK05858 244 VPADHPLAFSRARGKALGEADVVLVVGVPMDFRLGFGV--F--GGTAQLVHVDDAPPQRAHHRPVAAGLYGDLSAILSAL 319 (542)
T ss_pred CCCCCchhhhHHHHHHHHhCCEEEEECCCCcccccccc--c--CCCCEEEEECCCHHHhcCCCCCceEEeCCHHHHHHHH
Confidence 55655554333455678899999999998754322211 1 225789999998755443 45789999999999999
Q ss_pred HHhCC
Q 016025 386 LDVGS 390 (396)
Q Consensus 386 ~~~~~ 390 (396)
.+.+.
T Consensus 320 ~~~l~ 324 (542)
T PRK05858 320 AGAGG 324 (542)
T ss_pred HHhcc
Confidence 87653
No 28
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=92.69 E-value=0.16 Score=55.05 Aligned_cols=69 Identities=19% Similarity=0.289 Sum_probs=49.9
Q ss_pred HHHHHHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCCCCCCC--cccEEEeCcHHHHHHHHHHhC
Q 016025 319 KAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVG 389 (396)
Q Consensus 319 ~a~~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~~t~~d~--~a~l~I~~~a~evL~~L~~~~ 389 (396)
.+.+.+++||++|+||+++........... ..+.++|.||.++..... ..++.|.+|+..+|.+|++.+
T Consensus 273 ~~~~~l~~aDlvL~lG~~~~~~~~~~~~~~--~~~~~~I~id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l 343 (595)
T PRK09107 273 EANMAMHDCDVMLCVGARFDDRITGRLDAF--SPNSKKIHIDIDPSSINKNVRVDVPIIGDVGHVLEDMLRLW 343 (595)
T ss_pred HHHHHHHhCCEEEEECCCCCccccCchhhc--CCCCeEEEEECCHHHhCCCCCCCeEEecCHHHHHHHHHHhh
Confidence 345677899999999999865432222111 125679999998776543 467899999999999998765
No 29
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=92.65 E-value=0.16 Score=54.67 Aligned_cols=69 Identities=13% Similarity=0.191 Sum_probs=50.2
Q ss_pred HHHHHHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCCCCCCC--cccEEEeCcHHHHHHHHHHhC
Q 016025 319 KAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVG 389 (396)
Q Consensus 319 ~a~~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~~t~~d~--~a~l~I~~~a~evL~~L~~~~ 389 (396)
.+.+.+++||++|+||+++........... ..+.++|.||.++..... ..++.|.+|+.++|..|++.+
T Consensus 265 ~~~~~l~~aD~il~vG~~~~~~~~~~~~~~--~~~~~vi~id~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~l 335 (574)
T PRK06466 265 EANMAMHHADVILAVGARFDDRVTNGPAKF--CPNAKIIHIDIDPASISKTIKADIPIVGPVESVLTEMLAIL 335 (574)
T ss_pred HHHHHHHhCCEEEEECCCCCccccCchhhc--CCCCeEEEEECCHHHhCCccCCCeEEecCHHHHHHHHHHHh
Confidence 345678899999999999876443222111 225689999988765544 467899999999999998755
No 30
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=92.59 E-value=0.13 Score=55.57 Aligned_cols=68 Identities=15% Similarity=0.142 Sum_probs=49.1
Q ss_pred HHHHHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCCCCCCC--cccEEEeCcHHHHHHHHHHhC
Q 016025 320 AMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVG 389 (396)
Q Consensus 320 a~~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~~t~~d~--~a~l~I~~~a~evL~~L~~~~ 389 (396)
+.+.+++||++|++|+++.......... ...+.++|.||.++..+.. ..++.|.+|+..+|++|.+.+
T Consensus 263 a~~~l~~aD~iL~lG~~l~~~~t~~~~~--~~~~~~~I~id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l 332 (588)
T TIGR01504 263 GNATLLESDFVFGIGNRWANRHTGSVDV--YTEGRKFVHVDIEPTQIGRVFAPDLGIVSDAKAALKLLVEVA 332 (588)
T ss_pred HHHHHHhCCEEEEECCCCCccccCcccc--cCCCCeEEEeeCCHHHhcCcCCCCeEEEeCHHHHHHHHHHHh
Confidence 4567789999999999986543221111 1236779999988765433 467899999999999998754
No 31
>PRK08322 acetolactate synthase; Reviewed
Probab=92.57 E-value=0.19 Score=53.47 Aligned_cols=68 Identities=9% Similarity=0.172 Sum_probs=50.6
Q ss_pred HHHHHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCCCCCCC--cccEEEeCcHHHHHHHHHHhCC
Q 016025 320 AMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVGS 390 (396)
Q Consensus 320 a~~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~~t~~d~--~a~l~I~~~a~evL~~L~~~~~ 390 (396)
+.+.+++||++|+||+++...+...+. ...+.++|.||.++...+. ..++.|.+|+.++|++|.+.+.
T Consensus 256 ~~~~l~~aDlil~lG~~l~~~~~~~~~---~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 325 (547)
T PRK08322 256 VHCAIEHADLIINVGHDVIEKPPFFMN---PNGDKKVIHINFLPAEVDPVYFPQVEVVGDIANSLWQLKERLA 325 (547)
T ss_pred HHHHHHhCCEEEEECCCCccccccccC---CCCCCeEEEEeCCHHHcCCCcCCCeEEecCHHHHHHHHHHhcc
Confidence 456778999999999998765433221 1235689999998765443 4678899999999999987653
No 32
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=92.56 E-value=0.17 Score=54.55 Aligned_cols=69 Identities=16% Similarity=0.299 Sum_probs=49.2
Q ss_pred HHHHHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCCCCCC--CcccEEEeCcHHHHHHHHHHhCC
Q 016025 320 AMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRAD--DLTTLKISARLGEILPRVLDVGS 390 (396)
Q Consensus 320 a~~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~~t~~d--~~a~l~I~~~a~evL~~L~~~~~ 390 (396)
+.+.+.+||++|+||+++........... ..++++|.||.++.... ...++.|.+|+.++|..|++.+.
T Consensus 277 ~~~~l~~aDlvL~lG~~~~~~~~~~~~~~--~~~~~~i~id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~ 347 (585)
T CHL00099 277 ANFAVSECDLLIALGARFDDRVTGKLDEF--ACNAQVIHIDIDPAEIGKNRIPQVAIVGDVKKVLQELLELLK 347 (585)
T ss_pred HHHHHHhCCEEEEECCCCcccccCCHhHc--CCCCeEEEEECCHHHhCCCCCCCeEEecCHHHHHHHHHHHhh
Confidence 44567899999999999875432222111 23578999998876432 24578999999999999987653
No 33
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=92.38 E-value=0.17 Score=54.87 Aligned_cols=70 Identities=11% Similarity=0.199 Sum_probs=49.6
Q ss_pred HHHHHHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCCCCCC--CcccEEEeCcHHHHHHHHHHhCC
Q 016025 319 KAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRAD--DLTTLKISARLGEILPRVLDVGS 390 (396)
Q Consensus 319 ~a~~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~~t~~d--~~a~l~I~~~a~evL~~L~~~~~ 390 (396)
.+.+.+++||++|+|||++.......+... ..++++|.||.++.... ...++.|.+|+.++|..|.+.+.
T Consensus 290 ~~~~~l~~aDlvL~lG~~l~~~~t~~~~~~--~~~~~~i~Id~d~~~i~~~~~~~~~i~gD~~~~l~~L~~~l~ 361 (612)
T PRK07789 290 AAVAALQRSDLLIALGARFDDRVTGKLDSF--APDAKVIHADIDPAEIGKNRHADVPIVGDVKEVIAELIAALR 361 (612)
T ss_pred HHHHHHHhCCEEEEECCCCCccccCChhhc--CCCCcEEEEECCHHHhCCCCCCCeEEecCHHHHHHHHHHhhh
Confidence 345678899999999999875422111111 13567999998875332 34688999999999999987553
No 34
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=92.35 E-value=0.19 Score=53.95 Aligned_cols=69 Identities=20% Similarity=0.262 Sum_probs=49.1
Q ss_pred HHHHHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCCCCCCC--cccEEEeCcHHHHHHHHHHhCC
Q 016025 320 AMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVGS 390 (396)
Q Consensus 320 a~~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~~t~~d~--~a~l~I~~~a~evL~~L~~~~~ 390 (396)
+.+.+++||++|+||+++.......+-.. ..+.++|.||.++..+.. ..++.|.+|+.++|..|++.+.
T Consensus 263 ~~~~l~~aD~vl~lG~~l~~~~~~~~~~~--~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 333 (563)
T PRK08527 263 ANMAMSECDLLISLGARFDDRVTGKLSEF--AKHAKIIHVDIDPSSISKIVNADYPIVGDLKNVLKEMLEELK 333 (563)
T ss_pred HHHHHHhCCEEEEeCCCCCccccCChhhc--CCCCeEEEEECCHHHhCCCCCCCeEEecCHHHHHHHHHHhhh
Confidence 44577899999999999865432222111 225679999988765433 3578899999999999987653
No 35
>PRK07524 hypothetical protein; Provisional
Probab=92.25 E-value=0.16 Score=54.04 Aligned_cols=72 Identities=11% Similarity=0.084 Sum_probs=50.0
Q ss_pred HHHHHHHhhCCeEEEEccCcchhhHHH-HHHHHHHCCCeEEEEcCCCCCCCC--cccEEEeCcHHHHHHHHHHhCC
Q 016025 318 DKAMEAAKECDAFLVLGSSLMTMSAYR-LVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVGS 390 (396)
Q Consensus 318 ~~a~~~~~~aDllLVvGTSl~V~pa~~-Lv~~a~~~g~~lIiIN~~~t~~d~--~a~l~I~~~a~evL~~L~~~~~ 390 (396)
..+.+.++++|++|+||+++....... .... ...++++|.||.++..... ..++.|.+|+.++|.+|.+.+.
T Consensus 255 ~~~~~~~~~aDlvl~vG~~~~~~~~~~~~~~~-~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~L~~L~~~l~ 329 (535)
T PRK07524 255 PAVRALIAEADVVLAVGTELGETDYDVYFDGG-FPLPGELIRIDIDPDQLARNYPPALALVGDARAALEALLARLP 329 (535)
T ss_pred HHHHHHHHhCCEEEEeCCCcCccccccccccc-cCCCCCEEEEECCHHHhCCCcCCCceEecCHHHHHHHHHHhcc
Confidence 345677889999999999985432210 0000 1235679999988765433 4678899999999999988664
No 36
>PLN02470 acetolactate synthase
Probab=92.24 E-value=0.2 Score=53.98 Aligned_cols=68 Identities=13% Similarity=0.141 Sum_probs=48.4
Q ss_pred HHHHHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCCCCCCC--cccEEEeCcHHHHHHHHHHhC
Q 016025 320 AMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVG 389 (396)
Q Consensus 320 a~~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~~t~~d~--~a~l~I~~~a~evL~~L~~~~ 389 (396)
+.+.+++||++|+||+++........... ....++|.||.++..... ..++.|.+|+..+|..|.+.+
T Consensus 273 ~~~~~~~aDlvl~lG~~l~~~~~~~~~~~--~~~~~~I~id~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~l 342 (585)
T PLN02470 273 ANYAVDSADLLLAFGVRFDDRVTGKLEAF--ASRASIVHIDIDPAEIGKNKQPHVSVCADVKLALQGLNKLL 342 (585)
T ss_pred HHHHHHhCCEEEEECCCCcccccCChhhc--CCCCeEEEEECCHHHhCCCcCCCeEEecCHHHHHHHHHHhh
Confidence 45677899999999999865432211111 124678999998765433 357889999999999998755
No 37
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=92.09 E-value=0.22 Score=53.54 Aligned_cols=69 Identities=17% Similarity=0.166 Sum_probs=52.0
Q ss_pred HHHHHHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCCCCCCC--cccEEEeCcHHHHHHHHHHhCC
Q 016025 319 KAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVGS 390 (396)
Q Consensus 319 ~a~~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~~t~~d~--~a~l~I~~~a~evL~~L~~~~~ 390 (396)
.+...+++|||+|+||+.|.-.... +...+.. .. +|.|+.++..... ..++.|.+|+.++|.+|++.+.
T Consensus 259 ~a~~~~~~aDlll~vG~rf~~~~~~-~~~f~~~-~~-ii~iDidp~ei~k~~~~~~~i~gD~~~~l~~L~~~l~ 329 (550)
T COG0028 259 AANEALEEADLLLAVGARFDDRVTG-YSGFAPP-AA-IIHIDIDPAEIGKNYPVDVPIVGDAKATLEALLEELK 329 (550)
T ss_pred HHHHHhhcCCEEEEecCCCcccccc-hhhhCCc-CC-EEEEeCChHHhCCCCCCCeeEeccHHHHHHHHHHhhh
Confidence 4566788999999999999854444 3223332 22 9999999877665 4788999999999999988654
No 38
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=92.09 E-value=0.2 Score=53.89 Aligned_cols=69 Identities=17% Similarity=0.209 Sum_probs=49.6
Q ss_pred HHHHHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCCCCCCC--cccEEEeCcHHHHHHHHHHhCC
Q 016025 320 AMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVGS 390 (396)
Q Consensus 320 a~~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~~t~~d~--~a~l~I~~~a~evL~~L~~~~~ 390 (396)
+.+.+++||++|+||+++........... ..++++|.||.++..+.. ..++.|.+|+.++|+.|.+.++
T Consensus 274 ~~~~l~~aDlil~vG~~~~~~~~~~~~~~--~~~~~~i~id~d~~~i~~~~~~~~~i~gD~~~~l~~L~~~l~ 344 (570)
T PRK06725 274 ANMAVTECDLLLALGVRFDDRVTGKLELF--SPHSKKVHIDIDPSEFHKNVAVEYPVVGDVKKALHMLLHMSI 344 (570)
T ss_pred HHHHHHhCCEEEEeCCCCCccccCccccc--CCCCeEEEEeCCHHHhCCCCCCCeEEecCHHHHHHHHHHhcc
Confidence 45678899999999999865432211111 124578999988765543 4678899999999999987653
No 39
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=91.91 E-value=0.23 Score=53.39 Aligned_cols=69 Identities=14% Similarity=0.123 Sum_probs=49.1
Q ss_pred HHHHHHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCCCCCCC--cccEEEeCcHHHHHHHHHHhC
Q 016025 319 KAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVG 389 (396)
Q Consensus 319 ~a~~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~~t~~d~--~a~l~I~~~a~evL~~L~~~~ 389 (396)
.+.+.+++||++|+||+++.-......... ..++++|.||.++..+.. ..++.|.+|+..+|..|++.+
T Consensus 269 ~~~~~~~~aD~vl~lG~~l~~~~~~~~~~~--~~~~~~i~id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l 339 (566)
T PRK07282 269 AANIAMTEADFMINIGSRFDDRLTGNPKTF--AKNAKVAHIDIDPAEIGKIIKTDIPVVGDAKKALQMLLAEP 339 (566)
T ss_pred HHHHHHHhCCEEEEECCCCCccccCChhhc--CCCCeEEEEECCHHHhCCCCCCCeEEecCHHHHHHHHHHhh
Confidence 345677899999999999864322111111 125679999988765543 357889999999999998865
No 40
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=91.73 E-value=0.23 Score=53.17 Aligned_cols=69 Identities=16% Similarity=0.248 Sum_probs=49.2
Q ss_pred HHHHHHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCCCCCCC--cccEEEeCcHHHHHHHHHHhC
Q 016025 319 KAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVG 389 (396)
Q Consensus 319 ~a~~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~~t~~d~--~a~l~I~~~a~evL~~L~~~~ 389 (396)
.+.+.++++|++|+||+.+.......+-.. ..+.++|.||.++..... ..++.|.+|+.++|+.|.+.+
T Consensus 260 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~--~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l 330 (558)
T TIGR00118 260 TANLAVHECDLIIAVGARFDDRVTGNLAKF--APNAKIIHIDIDPAEIGKNVRVDIPIVGDARNVLEELLKKL 330 (558)
T ss_pred HHHHHHHhCCEEEEECCCCCccccCchhhc--CCCCcEEEEeCCHHHhCCcCCCCeEEecCHHHHHHHHHHhh
Confidence 345677899999999999865432111111 125689999988754333 457899999999999998865
No 41
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=91.65 E-value=0.26 Score=52.87 Aligned_cols=69 Identities=13% Similarity=0.191 Sum_probs=49.0
Q ss_pred HHHHHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCCCCCCC--cccEEEeCcHHHHHHHHHHhCC
Q 016025 320 AMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVGS 390 (396)
Q Consensus 320 a~~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~~t~~d~--~a~l~I~~~a~evL~~L~~~~~ 390 (396)
+.+.+++||++|+||+++........... ..++++|.||.++..... ..++.|.+|+.++|+.|++.+.
T Consensus 267 ~~~~l~~aD~vl~lG~~~~~~~~~~~~~~--~~~~~~I~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 337 (561)
T PRK06048 267 ANYAIQESDLIIAVGARFDDRVTGKLASF--APNAKIIHIDIDPAEISKNVKVDVPIVGDAKQVLKSLIKYVQ 337 (561)
T ss_pred HHHHHHhCCEEEEECCCCCccccCChhhc--CCCCeEEEEECCHHHhCCCCCCCeEEEeCHHHHHHHHHHhcc
Confidence 45577899999999999864322111111 235689999988754332 4678999999999999988654
No 42
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=91.57 E-value=0.35 Score=51.74 Aligned_cols=82 Identities=15% Similarity=0.216 Sum_probs=53.0
Q ss_pred EcCCCCCHHHHHHHHHHHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCCCCC--CCcccEEEeCcHHHHHHH
Q 016025 307 FFGDNVPKDRADKAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRA--DDLTTLKISARLGEILPR 384 (396)
Q Consensus 307 lFGE~lp~~~~~~a~~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~~t~~--d~~a~l~I~~~a~evL~~ 384 (396)
.|.|..|...=..+.+.+++||++|++|+.+.-+......... ..+.++|.|+.++... ....++.|.+|+.++|.+
T Consensus 246 ~~p~~hp~~~g~~~~~~~~~aDlvl~lG~~~~~~~~~~~~~~~-~~~~~vI~id~d~~~~~~~~~~~~~i~~D~~~~l~~ 324 (554)
T TIGR03254 246 LLPDTHPQSAAAARSFALAEADVVMLVGARLNWLLSHGKGKLW-GEDAKFIQVDIEPTEMDSNRPIAAPVVGDIGSVVQA 324 (554)
T ss_pred eCCCCCchhhhHHHHHHHhcCCEEEEECCCCchhhccCchhhc-CCCCcEEEcCCCHHHhCCCcCCceEEecCHHHHHHH
Confidence 4556555432122345688999999999998643321110011 1256888898876543 234578899999999999
Q ss_pred HHHhC
Q 016025 385 VLDVG 389 (396)
Q Consensus 385 L~~~~ 389 (396)
|.+.+
T Consensus 325 L~~~l 329 (554)
T TIGR03254 325 LLSAA 329 (554)
T ss_pred HHHHh
Confidence 98865
No 43
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=91.51 E-value=0.51 Score=48.98 Aligned_cols=65 Identities=12% Similarity=0.102 Sum_probs=48.7
Q ss_pred HHHHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCCCCCCC--cccEEEeCcHHHHHHHHHHhC
Q 016025 321 MEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVG 389 (396)
Q Consensus 321 ~~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~~t~~d~--~a~l~I~~~a~evL~~L~~~~ 389 (396)
.+.+ ++|++|++|+.+.......+. ...+.++|.|+.++...+. ..++.|.+|+.++|..|.+.+
T Consensus 270 ~~~~-~aDlvl~lG~~~~~~~~~~~~---~~~~~~~i~vd~d~~~~~~~~~~~~~i~~D~~~~l~~l~~~~ 336 (432)
T TIGR00173 270 REEL-QPDLVIRFGGPPVSKRLRQWL---ARQPAEYWVVDPDPGWLDPSHHATTRLEASPAEFAEALAGLL 336 (432)
T ss_pred hhhC-CCCEEEEeCCCcchhHHHHHH---hCCCCcEEEECCCCCccCCCCCceEEEEECHHHHHHHhhhcc
Confidence 3445 999999999998665444431 1235789999998876654 457889999999999987765
No 44
>PRK11269 glyoxylate carboligase; Provisional
Probab=91.36 E-value=0.27 Score=53.14 Aligned_cols=68 Identities=15% Similarity=0.122 Sum_probs=48.8
Q ss_pred HHHHHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCCCCCCC--cccEEEeCcHHHHHHHHHHhC
Q 016025 320 AMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVG 389 (396)
Q Consensus 320 a~~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~~t~~d~--~a~l~I~~~a~evL~~L~~~~ 389 (396)
+.+.+++||++|++|+++.......+.. ...+.++|.||.++..+.. ..++.|.+|+.++|..|.+.+
T Consensus 264 ~~~~~~~aDlvl~lG~~~~~~~~~~~~~--~~~~~~~i~Vd~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l 333 (591)
T PRK11269 264 GNATLLASDFVLGIGNRWANRHTGSVEV--YTKGRKFVHVDIEPTQIGRVFGPDLGIVSDAKAALELLVEVA 333 (591)
T ss_pred HHHHHHhCCEEEEeCCCCCccccCchhh--cCCCCeEEEeeCCHHHhCCCCCCCeEEEeCHHHHHHHHHHHh
Confidence 4566789999999999986533211111 1235689999988765433 457899999999999998765
No 45
>PRK06154 hypothetical protein; Provisional
Probab=91.10 E-value=0.34 Score=52.18 Aligned_cols=68 Identities=13% Similarity=0.125 Sum_probs=48.9
Q ss_pred HHHHHHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCCCCCCC--cccEEEeCcHHHHHHHHHHhCC
Q 016025 319 KAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVGS 390 (396)
Q Consensus 319 ~a~~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~~t~~d~--~a~l~I~~~a~evL~~L~~~~~ 390 (396)
.+.+.+++||++|+||+++........ -..+.++|.|+.++..... ..++.|.+|+.++|..|++.+.
T Consensus 273 ~~~~~~~~aDlvL~lG~~l~~~~~~~~----~~~~~~vI~id~d~~~~~~~~~~~~~i~~D~~~~L~~L~~~l~ 342 (565)
T PRK06154 273 TVAHFLREADVLFGIGCSLTRSYYGLP----MPEGKTIIHSTLDDADLNKDYPIDHGLVGDAALVLKQMIEELR 342 (565)
T ss_pred HHHHHHHhCCEEEEECCCCcccccCcc----CCCCCeEEEEECCHHHhccccCCCeeEEcCHHHHHHHHHHHhh
Confidence 345678899999999999875321110 1235689999988754432 4678999999999999987553
No 46
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=91.08 E-value=0.26 Score=53.01 Aligned_cols=69 Identities=12% Similarity=0.123 Sum_probs=48.9
Q ss_pred HHHHHHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCCCCCCC-cccEEEeCcHHHHHHHHHHhC
Q 016025 319 KAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD-LTTLKISARLGEILPRVLDVG 389 (396)
Q Consensus 319 ~a~~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~~t~~d~-~a~l~I~~~a~evL~~L~~~~ 389 (396)
.+.+.++++|++|++|+.+.......+.. ...+.++|.||.++..... ..++.|.+|+.++|++|.+.+
T Consensus 277 ~~~~~l~~aDlvl~lG~~~~~~~~~~~~~--~~~~~~~i~id~d~~~~~~~~~~~~i~~D~~~~l~~L~~~l 346 (578)
T PRK06112 277 HLRDLVREADVVLLVGTRTNQNGTDSWSL--YPEQAQYIHIDVDGEEVGRNYEALRLVGDARLTLAALTDAL 346 (578)
T ss_pred HHHHHHHhCCEEEEECCCCCccccccccc--cCCCCeEEEEECChHHhCccccceEEEeCHHHHHHHHHHhh
Confidence 45667889999999999987644322211 1235689999988754322 235889999999999998755
No 47
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=91.08 E-value=0.37 Score=51.32 Aligned_cols=67 Identities=15% Similarity=0.211 Sum_probs=48.5
Q ss_pred HHHHHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCCCCCCC--cccEEEeCcHHHHHHHHHHhC
Q 016025 320 AMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVG 389 (396)
Q Consensus 320 a~~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~~t~~d~--~a~l~I~~~a~evL~~L~~~~ 389 (396)
+.+.+++||++|++|+++..+....+. ...+.++|.||.++..... ..++.|.+|+.++|..|.+.+
T Consensus 256 ~~~~~~~aDlvl~lG~~~~~~~~~~~~---~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l 324 (539)
T TIGR02418 256 GDRLLKQADLVITIGYDPIEYEPRNWN---SENDATIVHIDVEPAQIDNNYQPDLELVGDIASTLDLLAERI 324 (539)
T ss_pred HHHHHHhCCEEEEecCcccccCccccC---cCCCCeEEEEeCChHHcCCccCCCeEEecCHHHHHHHHHHhh
Confidence 456788999999999997643321111 1224689999998876543 457889999999999998754
No 48
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=91.03 E-value=0.38 Score=51.62 Aligned_cols=68 Identities=16% Similarity=0.234 Sum_probs=49.1
Q ss_pred HHHHHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCCCCCCC--cccEEEeCcHHHHHHHHHHhC
Q 016025 320 AMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVG 389 (396)
Q Consensus 320 a~~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~~t~~d~--~a~l~I~~~a~evL~~L~~~~ 389 (396)
+.+.+++||++|++|+++........... ..+.++|.||.++..... ..++.|.+|+.++|.+|++.+
T Consensus 271 ~~~~l~~aDlvl~lG~~~~~~~~~~~~~~--~~~~~~I~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l 340 (564)
T PRK08155 271 TNYILQEADLLIVLGARFDDRAIGKTEQF--CPNAKIIHVDIDRAELGKIKQPHVAIQADVDDVLAQLLPLV 340 (564)
T ss_pred HHHHHHhCCEEEEECCCCCccccCCHhhc--CCCCeEEEEECCHHHhCCCcCCCeEEecCHHHHHHHHHHhh
Confidence 45577899999999999876432211111 235679999998766543 457889999999999998755
No 49
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=90.95 E-value=0.28 Score=52.35 Aligned_cols=69 Identities=14% Similarity=0.267 Sum_probs=48.3
Q ss_pred HHHHHHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCCCCCCC--cccEEEeCcHHHHHHHHHHhC
Q 016025 319 KAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVG 389 (396)
Q Consensus 319 ~a~~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~~t~~d~--~a~l~I~~~a~evL~~L~~~~ 389 (396)
.+.+.+++||++|++|+++...-...+-.. ..+.++|.||.++..... ..++.|.+|+.++|..|.+.+
T Consensus 255 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~--~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~l~~~~ 325 (548)
T PRK08978 255 AANLAVQECDLLIAVGARFDDRVTGKLNTF--APHAKVIHLDIDPAEINKLRQAHVALQGDLNALLPALQQPL 325 (548)
T ss_pred HHHHHHHhCCEEEEEcCCCCccccCCcccc--CCCCeEEEEECCHHHhCCCCCCCeEEecCHHHHHHHHHHhc
Confidence 355677899999999999865322111111 124679999988765443 467899999999999987643
No 50
>PRK08611 pyruvate oxidase; Provisional
Probab=90.94 E-value=0.45 Score=51.24 Aligned_cols=64 Identities=11% Similarity=0.163 Sum_probs=47.7
Q ss_pred HHHHHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCCCCCCC--cccEEEeCcHHHHHHHHHHhCC
Q 016025 320 AMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVGS 390 (396)
Q Consensus 320 a~~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~~t~~d~--~a~l~I~~~a~evL~~L~~~~~ 390 (396)
+.+.++++|++|+||+++.... + ...+.++|.||.++..... ..++.|.+|+.++|..|.+.+.
T Consensus 261 a~~~l~~aDlvl~iG~~~~~~~---~----~~~~~~~i~id~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~l~ 326 (576)
T PRK08611 261 AYEAMQEADLLIMVGTNYPYVD---Y----LPKKAKAIQIDTDPANIGKRYPVNVGLVGDAKKALHQLTENIK 326 (576)
T ss_pred HHHHHHhCCEEEEeCCCCCccc---c----CCCCCcEEEEeCCHHHcCCccCCCeeEecCHHHHHHHHHHhcc
Confidence 4567789999999999985322 1 1224689999988765443 4578899999999999987654
No 51
>PRK11032 hypothetical protein; Provisional
Probab=90.89 E-value=0.18 Score=45.70 Aligned_cols=10 Identities=40% Similarity=1.069 Sum_probs=9.0
Q ss_pred CCCcCCCCCC
Q 016025 290 HIPTCQKCNG 299 (396)
Q Consensus 290 ~iP~Cp~Cgg 299 (396)
.+|.||+||+
T Consensus 141 ~i~pCp~C~~ 150 (160)
T PRK11032 141 VLPLCPKCGH 150 (160)
T ss_pred cCCCCCCCCC
Confidence 6899999997
No 52
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=90.82 E-value=0.35 Score=51.96 Aligned_cols=70 Identities=23% Similarity=0.238 Sum_probs=49.7
Q ss_pred HHHHHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCCCCCCC--cccEEEeCcHHHHHHHHHHhCC
Q 016025 320 AMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVGS 390 (396)
Q Consensus 320 a~~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~~t~~d~--~a~l~I~~~a~evL~~L~~~~~ 390 (396)
+.+.+++||++|+||+++...+....... ...+.++|.||.++..... ..++.|.+|+.++|..|++.+.
T Consensus 267 ~~~~~~~aDlvl~lG~~~~~~~~~~~~~~-~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 338 (572)
T PRK06456 267 ASMAALESDAMLVVGARFSDRTFTSYDEM-VETRKKFIMVNIDPTDGEKAIKVDVGIYGNAKIILRELIKAIT 338 (572)
T ss_pred HHHHHHhCCEEEEECCCCchhhccccccc-cCCCCeEEEEeCChHHhCCccCCCeEEecCHHHHHHHHHHHhh
Confidence 45567799999999999876543222111 1225689999988765543 4678899999999999987553
No 53
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=90.54 E-value=0.33 Score=52.35 Aligned_cols=69 Identities=12% Similarity=0.170 Sum_probs=48.7
Q ss_pred HHHHHHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCCCCCCC--cccEEEeCcHHHHHHHHHHhC
Q 016025 319 KAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVG 389 (396)
Q Consensus 319 ~a~~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~~t~~d~--~a~l~I~~~a~evL~~L~~~~ 389 (396)
.+.+.+++||++|+||+.+........... ..+.++|.||.++..... ..++.|.+|+..+|+.|++.+
T Consensus 262 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~--~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~L~~L~~~l 332 (586)
T PRK06276 262 AANYSVTESDVLIAIGCRFSDRTTGDISSF--APNAKIIHIDIDPAEIGKNVRVDVPIVGDAKNVLRDLLAEL 332 (586)
T ss_pred HHHHHHHcCCEEEEECCCCCccccCCcccc--CCCCeEEEEECCHHHhCCcCCCceEEecCHHHHHHHHHHhh
Confidence 455678899999999999864322111111 235678999988765433 357889999999999998765
No 54
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=90.51 E-value=0.44 Score=51.56 Aligned_cols=67 Identities=18% Similarity=0.266 Sum_probs=48.0
Q ss_pred HHHHHHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCCCCCCC--cccEEEeCcHHHHHHHHHHhCC
Q 016025 319 KAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVGS 390 (396)
Q Consensus 319 ~a~~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~~t~~d~--~a~l~I~~~a~evL~~L~~~~~ 390 (396)
.+.+.+++||++|+|||++... .+.. ...++++|.||.++..... ..++.|.+|+.++|.+|++.++
T Consensus 265 ~a~~~~~~aDlvl~lG~~~~~~---~~~~--~~~~~~~i~Id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 333 (597)
T PRK08273 265 PSYELMRECDTLLMVGSSFPYS---EFLP--KEGQARGVQIDIDGRMLGLRYPMEVNLVGDAAETLRALLPLLE 333 (597)
T ss_pred HHHHHHHhCCEEEEeCCCCCHH---hcCC--CCCCCeEEEEeCCHHHcCCCCCCCceEecCHHHHHHHHHHhhh
Confidence 3556788999999999998422 1110 1125689999988765432 3567899999999999987654
No 55
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=90.51 E-value=0.28 Score=52.92 Aligned_cols=71 Identities=18% Similarity=0.186 Sum_probs=49.3
Q ss_pred HHHHHhhCCeEEEEccCcchhhHHH-HHHHHHHCCCeEEEEcCCCCCCCC--cccEEEeCcHHHHHHHHHHhCC
Q 016025 320 AMEAAKECDAFLVLGSSLMTMSAYR-LVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVGS 390 (396)
Q Consensus 320 a~~~~~~aDllLVvGTSl~V~pa~~-Lv~~a~~~g~~lIiIN~~~t~~d~--~a~l~I~~~a~evL~~L~~~~~ 390 (396)
+.+.+++||++|+||+++.-..... ........++++|.|+.++..+.. ..++.|.+|+..+|+.|++.+.
T Consensus 260 ~~~~~~~aDlvl~lG~~l~~~~~~~~~~~~~~~~~~~iI~Id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 333 (588)
T PRK07525 260 AMELIAKADVVLALGTRLNPFGTLPQYGIDYWPKDAKIIQVDINPDRIGLTKKVSVGICGDAKAVARELLARLA 333 (588)
T ss_pred HHHHHHhCCEEEEECCCCchhhcccccccccCCCCCeEEEEECCHHHhCCCCCCCceEecCHHHHHHHHHHhhh
Confidence 4567889999999999986432110 000011236789999988765432 4678899999999999988664
No 56
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=90.45 E-value=0.42 Score=51.59 Aligned_cols=70 Identities=14% Similarity=0.236 Sum_probs=49.3
Q ss_pred HHHHHHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCCCCCCC--cccEEEeCcHHHHHHHHHHhC
Q 016025 319 KAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVG 389 (396)
Q Consensus 319 ~a~~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~~t~~d~--~a~l~I~~~a~evL~~L~~~~ 389 (396)
.+.+.+++||++|+||+++..+.....-... ..++++|.||.++..+.. ..++.|.+|+.++|..|++.+
T Consensus 280 ~a~~~~~~aDlvl~lG~~~~~~~~~~~~~~~-~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l 351 (587)
T PRK06965 280 EANMAMQHCDVLIAIGARFDDRVIGNPAHFA-SRPRKIIHIDIDPSSISKRVKVDIPIVGDVKEVLKELIEQL 351 (587)
T ss_pred HHHHHHHhCCEEEEECCCCcccccCChhhcC-CCCceEEEEeCCHHHhCCcCCCCeEEecCHHHHHHHHHHhh
Confidence 3556778999999999998654321110111 124789999988765433 457899999999999998755
No 57
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=90.40 E-value=0.57 Score=50.57 Aligned_cols=63 Identities=19% Similarity=0.277 Sum_probs=47.7
Q ss_pred HHHHHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCCCCCCC--cccEEEeCcHHHHHHHHHHhCC
Q 016025 320 AMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVGS 390 (396)
Q Consensus 320 a~~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~~t~~d~--~a~l~I~~~a~evL~~L~~~~~ 390 (396)
+.+.+++||++|+||+++... .+ . .+.++|.||.++..+.. ..++.|.+|+..+|+.|++.+.
T Consensus 259 ~~~~l~~aDlvl~lG~~~~~~---~~---~--~~~~~I~vd~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~L~ 323 (578)
T PRK06546 259 AHEAMHEADLLILLGTDFPYD---QF---L--PDVRTAQVDIDPEHLGRRTRVDLAVHGDVAETIRALLPLVK 323 (578)
T ss_pred HHHHHHhCCEEEEEcCCCChh---hc---C--CCCcEEEEeCCHHHhCCCCCCCeEEEcCHHHHHHHHHHhhc
Confidence 455678999999999987521 11 1 24579999988766543 4678999999999999988764
No 58
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=90.29 E-value=0.19 Score=44.88 Aligned_cols=13 Identities=38% Similarity=0.797 Sum_probs=10.4
Q ss_pred cceeeeCCCCccc
Q 016025 222 VYTVVCLDCGFSF 234 (396)
Q Consensus 222 l~~~~C~~C~~~~ 234 (396)
.+.++|.+|++..
T Consensus 110 ~G~l~C~~Cg~~~ 122 (146)
T PF07295_consen 110 PGTLVCENCGHEV 122 (146)
T ss_pred CceEecccCCCEE
Confidence 4577999999864
No 59
>PRK08266 hypothetical protein; Provisional
Probab=90.20 E-value=0.26 Score=52.50 Aligned_cols=68 Identities=21% Similarity=0.182 Sum_probs=48.5
Q ss_pred HHHHHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCCCCCC-CcccEEEeCcHHHHHHHHHHhCC
Q 016025 320 AMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRAD-DLTTLKISARLGEILPRVLDVGS 390 (396)
Q Consensus 320 a~~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~~t~~d-~~a~l~I~~~a~evL~~L~~~~~ 390 (396)
+.+.+++||++|++|+++... ...+.. ...+.++|.||.++.... ...++.|.+|+.++|+.|.+.+.
T Consensus 257 ~~~~~~~aDlvl~lG~~~~~~-~~~~~~--~~~~~~~i~id~d~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 325 (542)
T PRK08266 257 AYELWPQTDVVIGIGSRLELP-TFRWPW--RPDGLKVIRIDIDPTEMRRLKPDVAIVADAKAGTAALLDALS 325 (542)
T ss_pred HHHHHHhCCEEEEeCCCcCcc-cccccc--cCCCCcEEEEECCHHHhCCcCCCceEecCHHHHHHHHHHhhh
Confidence 456778999999999998765 222211 123568999988765433 24578899999999999987653
No 60
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=90.03 E-value=0.58 Score=50.29 Aligned_cols=81 Identities=15% Similarity=0.190 Sum_probs=52.3
Q ss_pred cCCCCCHHHHHHHHHHHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCCCCCCC--cccEEEeCcHHHHHHHH
Q 016025 308 FGDNVPKDRADKAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRV 385 (396)
Q Consensus 308 FGE~lp~~~~~~a~~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~~t~~d~--~a~l~I~~~a~evL~~L 385 (396)
|.|..|...=......+++||++|+||+++.-.......... ..+.++|.|+.++..... ..++.|.+|+..+|.+|
T Consensus 254 ~~e~hpl~~G~~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~~-~~~~~ii~Id~d~~~~~~~~~~~~~i~~D~~~~L~~L 332 (569)
T PRK09259 254 LPDTHPQSAAAARSLALANADVVLLVGARLNWLLSHGKGKTW-GADKKFIQIDIEPQEIDSNRPIAAPVVGDIGSVMQAL 332 (569)
T ss_pred CCCCChhhhhHHHHHHHhcCCEEEEeCCCCchhcccCchhcc-CCCCcEEEecCChHHhcCCccCceeEecCHHHHHHHH
Confidence 566655431112334688999999999998643221110000 135689999887664433 45788999999999999
Q ss_pred HHhC
Q 016025 386 LDVG 389 (396)
Q Consensus 386 ~~~~ 389 (396)
++.+
T Consensus 333 ~~~l 336 (569)
T PRK09259 333 LAGL 336 (569)
T ss_pred HHHh
Confidence 8755
No 61
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=90.02 E-value=0.39 Score=51.68 Aligned_cols=67 Identities=18% Similarity=0.151 Sum_probs=47.9
Q ss_pred HHHHHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCCCCC-----CCcccEEEeCcHHHHHHHHHHhCC
Q 016025 320 AMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRA-----DDLTTLKISARLGEILPRVLDVGS 390 (396)
Q Consensus 320 a~~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~~t~~-----d~~a~l~I~~~a~evL~~L~~~~~ 390 (396)
+.+.++++||+|+||+.+...+... . ...+.++|.||.++... ....++.|.+|+..+|.+|.+.+.
T Consensus 273 ~~~~~~~aDlvl~lG~~l~~~~~~~--~--~~~~~~vi~Id~d~~~~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 344 (569)
T PRK08327 273 PRADLAEADLVLVVDSDVPWIPKKI--R--PDADARVIQIDVDPLKSRIPLWGFPCDLCIQADTSTALDQLEERLK 344 (569)
T ss_pred cchhhhhCCEEEEeCCCCCCccccc--c--CCCCCeEEEEeCChhhhcccccCcceeEEEecCHHHHHHHHHHHHh
Confidence 4556789999999999875432211 0 12356899999887543 234578999999999999988664
No 62
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=89.79 E-value=0.47 Score=50.99 Aligned_cols=69 Identities=22% Similarity=0.249 Sum_probs=48.1
Q ss_pred HHHHHHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCCCCCCC--cccEEEeCcHHHHHHHHHHhC
Q 016025 319 KAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVG 389 (396)
Q Consensus 319 ~a~~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~~t~~d~--~a~l~I~~~a~evL~~L~~~~ 389 (396)
.+.+.+++||++|++|+++............ .+.++|.|+.++..... ..++.|.+|+.++|..|.+.+
T Consensus 274 ~~~~~l~~aDlvL~lG~~~~~~~~~~~~~~~--~~~~~i~id~d~~~ig~~~~~~~~i~~D~~~~l~~L~~~~ 344 (571)
T PRK07710 274 TANMALYECDLLINIGARFDDRVTGNLAYFA--KEATVAHIDIDPAEIGKNVPTEIPIVADAKQALQVLLQQE 344 (571)
T ss_pred HHHHHHHhCCEEEEeCCCCCccccCchhhcC--CCCeEEEEECCHHHhcCcCCCCeEEecCHHHHHHHHHHhh
Confidence 3456678999999999998653221111111 25678899988764432 357889999999999998754
No 63
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=89.61 E-value=0.44 Score=51.01 Aligned_cols=71 Identities=14% Similarity=0.121 Sum_probs=49.2
Q ss_pred HHHHHHhhCCeEEEEccCcchhhHHHHHHHH-HHCCCeEEEEcCCCCCCCC--cccEEEeCcHHHHHHHHHHhC
Q 016025 319 KAMEAAKECDAFLVLGSSLMTMSAYRLVRAA-HEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVG 389 (396)
Q Consensus 319 ~a~~~~~~aDllLVvGTSl~V~pa~~Lv~~a-~~~g~~lIiIN~~~t~~d~--~a~l~I~~~a~evL~~L~~~~ 389 (396)
.+.+.+++||++|++|+++...+...+.... .....++|.||.++..... ..++.|.+|+..+|..|.+.+
T Consensus 263 ~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~~~~i~vd~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~~ 336 (557)
T PRK08199 263 ALAARIREADLVLAVGTRLGEVTTQGYTLLDIPVPRQTLVHVHPDAEELGRVYRPDLAIVADPAAFAAALAALE 336 (557)
T ss_pred HHHHHHHhCCEEEEeCCCCccccccccccccccCCCCeEEEEeCCHHHhCCccCCCeEEecCHHHHHHHHHhcc
Confidence 3456778999999999998654432111110 0124679999988765443 457899999999999998754
No 64
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=89.24 E-value=0.4 Score=51.60 Aligned_cols=70 Identities=19% Similarity=0.206 Sum_probs=49.1
Q ss_pred HHHHHHhhCCeEEEEccCcchhhH---HHHHHHHHHCCCeEEEEcCCCCCCCC--cccEEEeCcHHHHHHHHHHhCC
Q 016025 319 KAMEAAKECDAFLVLGSSLMTMSA---YRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVGS 390 (396)
Q Consensus 319 ~a~~~~~~aDllLVvGTSl~V~pa---~~Lv~~a~~~g~~lIiIN~~~t~~d~--~a~l~I~~~a~evL~~L~~~~~ 390 (396)
.+.+.+++||++|+||+.+..... .... ....++++|.||.++..+.. ..++.|.+|+..+|.+|++.+.
T Consensus 255 ~~~~~l~~aDlil~lG~~~~~~~~~~~~~~~--~~~~~~~~I~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 329 (579)
T TIGR03457 255 AAMKLISDADVVLALGTRLGPFGTLPQYGID--YWPKNAKIIQVDANAKMIGLVKKVTVGICGDAKAAAAEILQRLA 329 (579)
T ss_pred HHHHHHHhCCEEEEECCCCcccccccccccc--cCCCCCeEEEEeCCHHHhCCCCCCCeeEecCHHHHHHHHHHhhh
Confidence 345678899999999999863211 1110 11236789999988755433 4678899999999999988663
No 65
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=88.19 E-value=0.94 Score=48.69 Aligned_cols=64 Identities=16% Similarity=0.274 Sum_probs=47.3
Q ss_pred HHHHHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCCCCCCC--cccEEEeCcHHHHHHHHHHhCC
Q 016025 320 AMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVGS 390 (396)
Q Consensus 320 a~~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~~t~~d~--~a~l~I~~~a~evL~~L~~~~~ 390 (396)
+.+.+++||++|+||+++.... + ...+.++|.||.++..... ..++.|.+|+.++|..|.+.+.
T Consensus 259 ~~~~~~~aDlvl~lG~~~~~~~---~----~~~~~~ii~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 324 (574)
T PRK09124 259 GYHAMMNCDTLLMLGTDFPYRQ---F----YPTDAKIIQIDINPGSLGRRSPVDLGLVGDVKATLAALLPLLE 324 (574)
T ss_pred HHHHHHhCCEEEEECCCCCccc---c----cCCCCcEEEeeCCHHHhCCCCCCCeEEEccHHHHHHHHHHhhh
Confidence 3467789999999999885321 1 1124689999988765543 4578899999999999987553
No 66
>PRK08617 acetolactate synthase; Reviewed
Probab=87.93 E-value=0.78 Score=49.04 Aligned_cols=67 Identities=15% Similarity=0.167 Sum_probs=47.6
Q ss_pred HHHHHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCCCCCCC--cccEEEeCcHHHHHHHHHHhC
Q 016025 320 AMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVG 389 (396)
Q Consensus 320 a~~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~~t~~d~--~a~l~I~~~a~evL~~L~~~~ 389 (396)
+.+.++++|++|++|+++..+....+. ...+.++|.||.++...+. ..++.|.+|+.++|..|++.+
T Consensus 262 ~~~~~~~aDlvl~lG~~~~~~~~~~~~---~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l 330 (552)
T PRK08617 262 GDELLKKADLVITIGYDPIEYEPRNWN---SEGDATIIHIDVLPAEIDNYYQPERELIGDIAATLDLLAEKL 330 (552)
T ss_pred HHHHHHhCCEEEEecCccccccccccc---cCCCCcEEEEeCChHHhCCccCCCeEEeCCHHHHHHHHHHhh
Confidence 445678999999999987543221111 1124689999988766544 457889999999999997654
No 67
>cd02766 MopB_3 The MopB_3 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=87.93 E-value=0.91 Score=48.06 Aligned_cols=55 Identities=16% Similarity=0.314 Sum_probs=43.6
Q ss_pred HHHHhhCCeEEEEccCcch--hhHHHHHHHHHHCCCeEEEEcCCCCCCCCcccEEEe
Q 016025 321 MEAAKECDAFLVLGSSLMT--MSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKIS 375 (396)
Q Consensus 321 ~~~~~~aDllLVvGTSl~V--~pa~~Lv~~a~~~g~~lIiIN~~~t~~d~~a~l~I~ 375 (396)
.+.+.++|++|++|+.... +...+.+..++++|+++|.|++..+.....+|.+|.
T Consensus 152 ~~d~~~ad~il~~G~Np~~s~p~~~~~~~~a~~~GaklivvDPr~t~ta~~Ad~~l~ 208 (501)
T cd02766 152 PEDMVNADLIVIWGINPAATNIHLMRIIQEARKRGAKVVVIDPYRTATAARADLHIQ 208 (501)
T ss_pred HHHHhcCCEEEEECCChhhhchhHHHHHHHHHHCCCEEEEECCCCCccHHHhCeeec
Confidence 3466799999999987654 234455667888999999999999988888888764
No 68
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=87.55 E-value=0.9 Score=48.96 Aligned_cols=67 Identities=16% Similarity=0.175 Sum_probs=46.4
Q ss_pred HHHHHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCCCCCCC--cccEEEeCcHHHHHHHHHHhCC
Q 016025 320 AMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVGS 390 (396)
Q Consensus 320 a~~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~~t~~d~--~a~l~I~~~a~evL~~L~~~~~ 390 (396)
+.+.+++||++|++|+++...... ... ..+..+|.||.++..... ..++.|.+|+..+|.+|++.+.
T Consensus 258 ~~~~l~~aDlvl~vG~~~~~~~~~---~~~-~~~~~~I~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 326 (575)
T TIGR02720 258 ANEALFQADLVLFVGNNYPFAEVS---KAF-KNTKYFIQIDIDPAKLGKRHHTDIAVLADAKKALAAILAQVE 326 (575)
T ss_pred HHHHHHhCCEEEEeCCCCCccccc---ccc-CCCceEEEEeCCHHHhCCCCCCCeEEecCHHHHHHHHHHhcc
Confidence 455778999999999987532211 111 124456889887654333 4578899999999999987654
No 69
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=87.36 E-value=0.4 Score=32.74 Aligned_cols=13 Identities=46% Similarity=1.063 Sum_probs=10.4
Q ss_pred ceeeeCCCCcccc
Q 016025 223 YTVVCLDCGFSFC 235 (396)
Q Consensus 223 ~~~~C~~C~~~~~ 235 (396)
+..+|.+|++.+.
T Consensus 4 Y~y~C~~Cg~~fe 16 (41)
T smart00834 4 YEYRCEDCGHTFE 16 (41)
T ss_pred EEEEcCCCCCEEE
Confidence 5679999998764
No 70
>PRK07064 hypothetical protein; Provisional
Probab=87.12 E-value=0.88 Score=48.46 Aligned_cols=69 Identities=19% Similarity=0.219 Sum_probs=48.9
Q ss_pred HHHHHHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCCCCCC--CcccEEEeCcHHHHHHHHHHhCC
Q 016025 319 KAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRAD--DLTTLKISARLGEILPRVLDVGS 390 (396)
Q Consensus 319 ~a~~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~~t~~d--~~a~l~I~~~a~evL~~L~~~~~ 390 (396)
.+.+.+++||++|+||+.+......... . ....++|.||.++.... ...++.|.+|+.++|..|.+.+.
T Consensus 257 ~~~~~~~~aDlvl~iG~~~~~~~~~~~~-~--~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 327 (544)
T PRK07064 257 AVEALYKTCDLLLVVGSRLRGNETLKYS-L--ALPRPLIRVDADAAADGRGYPNDLFVHGDAARVLARLADRLE 327 (544)
T ss_pred HHHHHHHhCCEEEEecCCCCcccccccc-c--CCCCceEEEeCCHHHhCCcCCCCceEecCHHHHHHHHHHhhh
Confidence 3556778999999999998754432211 1 11347899998765443 24578899999999999987553
No 71
>cd02750 MopB_Nitrate-R-NarG-like Respiratory nitrate reductase A (NarGHI), alpha chain (NarG) and related proteins. Under anaerobic conditions in the presence of nitrate, E. coli synthesizes the cytoplasmic membrane-bound quinol-nitrate oxidoreductase (NarGHI), which reduces nitrate to nitrite and forms part of a redox loop generating a proton-motive force. Found in prokaryotes and some archaea, NarGHI usually functions as a heterotrimer. The alpha chain contains the molybdenum cofactor-containing Mo-bisMGD catalytic subunit. Members of the MopB_Nitrate-R-NarG-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=86.12 E-value=1.5 Score=45.81 Aligned_cols=56 Identities=13% Similarity=0.196 Sum_probs=42.6
Q ss_pred HHHhhCCeEEEEccCcch-h-hHHHHHHHHHHCCCeEEEEcCCCCCCCCcccEEEeCc
Q 016025 322 EAAKECDAFLVLGSSLMT-M-SAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISAR 377 (396)
Q Consensus 322 ~~~~~aDllLVvGTSl~V-~-pa~~Lv~~a~~~g~~lIiIN~~~t~~d~~a~l~I~~~ 377 (396)
+.+.++|++|++|+.... . .....+..++++|+++|.|++..+.....+|.+|.-+
T Consensus 166 ~d~~~ad~il~~G~N~~~~~~~~~~~l~~ar~~GaklividPr~s~ta~~Ad~~l~i~ 223 (461)
T cd02750 166 ADWYNADYIIMWGSNVPVTRTPDAHFLTEARYNGAKVVVVSPDYSPSAKHADLWVPIK 223 (461)
T ss_pred hHHhcCcEEEEECCChHHccCchHHHHHHHHHCCCEEEEEcCCCCcchhhcCEEeccC
Confidence 456789999999987654 2 2334445688899999999999998888888876543
No 72
>PLN02573 pyruvate decarboxylase
Probab=85.69 E-value=0.65 Score=50.14 Aligned_cols=68 Identities=13% Similarity=0.085 Sum_probs=45.1
Q ss_pred HHHHHHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCCCCCCCcccEEEeCcHHHHHHHHHHhC
Q 016025 319 KAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVLDVG 389 (396)
Q Consensus 319 ~a~~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~~t~~d~~a~l~I~~~a~evL~~L~~~~ 389 (396)
.+.+.+++||++|+||++|.......... ...+.++|.||.++..+....++.+. ++.++|..|++.+
T Consensus 284 ~~~~~~~~aDlvl~lG~~l~~~~~~~~~~--~~~~~~~I~id~d~~~i~~~~~~~~~-~~~~~l~~L~~~l 351 (578)
T PLN02573 284 FCAEIVESADAYLFAGPIFNDYSSVGYSL--LLKKEKAIIVQPDRVTIGNGPAFGCV-LMKDFLEALAKRV 351 (578)
T ss_pred HHHHHHHhCCEEEEECCccCCcccccccc--cCCCCcEEEEeCCEEEECCcceECCc-CHHHHHHHHHHHh
Confidence 34566789999999999986543322111 12356799999988765443344444 5888888887755
No 73
>cd02765 MopB_4 The MopB_4 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=85.13 E-value=1.7 Score=46.71 Aligned_cols=56 Identities=13% Similarity=0.215 Sum_probs=43.9
Q ss_pred HHHhhCCeEEEEccCcch-h-hHHHHHHHHHHCCCeEEEEcCCCCCCCCcccEEEeCc
Q 016025 322 EAAKECDAFLVLGSSLMT-M-SAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISAR 377 (396)
Q Consensus 322 ~~~~~aDllLVvGTSl~V-~-pa~~Lv~~a~~~g~~lIiIN~~~t~~d~~a~l~I~~~ 377 (396)
..+.++|++|++|+.... . ...+....++++|+++|.|++..+.....+|.+|.-+
T Consensus 155 ~D~~~ad~il~~G~Np~~s~~~~~~~~~~a~~~GakliviDPr~s~ta~~Ad~~l~ir 212 (567)
T cd02765 155 TDWVNAKTIIIWGSNILETQFQDAEFFLDARENGAKIVVIDPVYSTTAAKADQWVPIR 212 (567)
T ss_pred hHHhcCcEEEEECCChHHccchhHHHHHHHHHcCCeEEEECCCCCcchhhcCEEeccC
Confidence 456799999999998654 2 3455566788899999999999998888888876544
No 74
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=84.71 E-value=1.2 Score=49.28 Aligned_cols=66 Identities=15% Similarity=0.295 Sum_probs=50.7
Q ss_pred HHHHhhCCeEEEEccCcc-hhhH-HHHHHHHHH-CCCeEEEEcCCCCCCCCcccEEEeCcHHHHHHHHH
Q 016025 321 MEAAKECDAFLVLGSSLM-TMSA-YRLVRAAHE-AGSTIAIVNVGETRADDLTTLKISARLGEILPRVL 386 (396)
Q Consensus 321 ~~~~~~aDllLVvGTSl~-V~pa-~~Lv~~a~~-~g~~lIiIN~~~t~~d~~a~l~I~~~a~evL~~L~ 386 (396)
.+.+..+|++|+||+.-. ..|+ +..++.|++ +|.++|.+.+..+++...+++.++-+-+.=+..|.
T Consensus 415 i~dve~ad~vliIG~N~te~HPV~asr~kra~k~~G~KliV~D~R~~emaerAdlf~~pkpGtd~a~l~ 483 (978)
T COG3383 415 IEDVEGADLVLIIGANPTEGHPVLASRLKRAHKLRGQKLIVIDPRKHEMAERADLFLHPKPGTDLAWLT 483 (978)
T ss_pred HHHHhhCCeEEEEcCCCCccCccHHHHHHHHHHhcCCeEEEeccchhHHHHhhhcccCCCCCccHHHHH
Confidence 456789999999998654 3443 556667776 99999999999999999999998877665444443
No 75
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=84.63 E-value=0.76 Score=48.37 Aligned_cols=80 Identities=16% Similarity=0.224 Sum_probs=53.7
Q ss_pred CCCCCHHHHHHHHHHHhhCCeEEEEccCcchhhHHHH-HHHHHHCCCeEEEEcCCCCCCCC---cccEEEeCcHHHHHHH
Q 016025 309 GDNVPKDRADKAMEAAKECDAFLVLGSSLMTMSAYRL-VRAAHEAGSTIAIVNVGETRADD---LTTLKISARLGEILPR 384 (396)
Q Consensus 309 GE~lp~~~~~~a~~~~~~aDllLVvGTSl~V~pa~~L-v~~a~~~g~~lIiIN~~~t~~d~---~a~l~I~~~a~evL~~ 384 (396)
+|..|...-..--.++++||++|++|+-|+----..+ ++. ....++|.||..+..+.. ..++-|.+|++.++..
T Consensus 259 ~d~hPl~v~~aRS~ALk~ADvvll~GarlnwiLhfG~~Pk~--~kd~KfIqvd~n~Eel~~n~~k~~v~i~gDig~~~~~ 336 (571)
T KOG1185|consen 259 PDNHPLNVSSARSLALKKADVVLLAGARLNWILHFGLPPKW--SKDVKFIQVDINPEELGNNFVKPDVAIQGDIGLFVLQ 336 (571)
T ss_pred CCCCchhhhHHHHHHHhhCCEEEEecceeeEEEecCCCCcc--CCCceEEEEeCCHHHHhcccCCCCceeeecHHHHHHH
Confidence 4555543222223478899999999999874111111 112 247889999988755433 4678899999999999
Q ss_pred HHHhCC
Q 016025 385 VLDVGS 390 (396)
Q Consensus 385 L~~~~~ 390 (396)
|++.++
T Consensus 337 L~e~l~ 342 (571)
T KOG1185|consen 337 LVEELQ 342 (571)
T ss_pred HHHHhc
Confidence 988664
No 76
>cd02759 MopB_Acetylene-hydratase The MopB_Acetylene-hydratase CD contains acetylene hydratase (Ahy) and other related proteins. The acetylene hydratase of Pelobacter acetylenicus is a tungsten iron-sulfur protein involved in the fermentation of acetylene to ethanol and acetate. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=84.05 E-value=2.1 Score=44.85 Aligned_cols=56 Identities=14% Similarity=0.143 Sum_probs=43.2
Q ss_pred HHHhhCCeEEEEccCcch-h--hHHHHHHHHHHCCCeEEEEcCCCCCCCCcccEEEeCc
Q 016025 322 EAAKECDAFLVLGSSLMT-M--SAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISAR 377 (396)
Q Consensus 322 ~~~~~aDllLVvGTSl~V-~--pa~~Lv~~a~~~g~~lIiIN~~~t~~d~~a~l~I~~~ 377 (396)
..+++||++|++|+.... . .....+..++++|+++|.|++..+.....+|.+|.-+
T Consensus 156 ~d~~~ad~Il~~G~n~~~~~~~~~~~~~~~ar~~g~klividpr~s~ta~~Ad~~l~i~ 214 (477)
T cd02759 156 PDWENPECIVLWGKNPLNSNLDLQGHWLVAAMKRGAKLIVVDPRLTWLAARADLWLPIR 214 (477)
T ss_pred hhhhcCCEEEEEccChhhhCcHHHHHHHHHHHHCCCEEEEECCCCChhhHhhCeeeccC
Confidence 356799999999997654 2 3344555677889999999999998888888877533
No 77
>cd02768 MopB_NADH-Q-OR-NuoG2 MopB_NADH-Q-OR-NuoG2: The NuoG/Nad11/75-kDa subunit (second domain) of the NADH-quinone oxidoreductase (NADH-Q-OR)/respiratory complex I/NADH dehydrogenase-1 (NDH-1). The NADH-Q-OR is the first energy-transducting complex in the respiratory chains of many prokaryotes and eukaryotes. Mitochondrial complex I and its bacterial counterpart, NDH-1, function as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The atomic structure of complex I is not known and the mechanisms of electron transfer and proton pumping are not established. The nad11 gene codes for the largest (75-kDa) subunit of the mitochondrial NADH:ubiquinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. In Escherichia coli, this subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the 'minimal' fun
Probab=83.06 E-value=4.5 Score=40.77 Aligned_cols=56 Identities=25% Similarity=0.335 Sum_probs=39.2
Q ss_pred HHHhhCCeEEEEccCcch-hh-HHHHHHHHHH-CCCeEEEEcCCCCCCCCcccEEEeCcHH
Q 016025 322 EAAKECDAFLVLGSSLMT-MS-AYRLVRAAHE-AGSTIAIVNVGETRADDLTTLKISARLG 379 (396)
Q Consensus 322 ~~~~~aDllLVvGTSl~V-~p-a~~Lv~~a~~-~g~~lIiIN~~~t~~d~~a~l~I~~~a~ 379 (396)
..++++|++|++|+.... .| ....+..+.+ +|+++|.|++..+.. .++.++.-+.+
T Consensus 144 ~di~~ad~il~~G~n~~~~~p~~~~~~~~a~~~~g~kli~idp~~t~~--~ad~~~~~~pg 202 (386)
T cd02768 144 AEIEEADAVLLIGSNLRKEAPLLNARLRKAVKKKGAKIAVIGPKDTDL--IADLTYPVSPL 202 (386)
T ss_pred HHHhhCCEEEEEcCCcchhchHHHHHHHHHHHcCCCeEEEECCCcccc--ccceEEEcCCc
Confidence 456799999999997653 33 3333445544 499999999988877 66776654444
No 78
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=82.93 E-value=2.5 Score=45.20 Aligned_cols=60 Identities=17% Similarity=0.288 Sum_probs=43.8
Q ss_pred HHHHHHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCCCCCCC--cccEEEeCcHHHHHHHH
Q 016025 319 KAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRV 385 (396)
Q Consensus 319 ~a~~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~~t~~d~--~a~l~I~~~a~evL~~L 385 (396)
.+.+.+++||++|++|+++.... + ...+.++|.||.++..... ..++.|.+|+..+|..+
T Consensus 252 ~~~~~l~~aDlvl~lG~~~~~~~---~----~~~~~~ii~id~d~~~~~~~~~~~~~i~~d~~~~l~~~ 313 (549)
T PRK06457 252 PSIEAMDKADLLIMLGTSFPYVN---F----LNKSAKVIQVDIDNSNIGKRLDVDLSYPIPVAEFLNID 313 (549)
T ss_pred HHHHHHHhCCEEEEECCCCChhh---c----CCCCCcEEEEeCCHHHhCCCCCCCeEEecCHHHHHHHH
Confidence 34567789999999999985321 1 1125689999998765543 46789999999999543
No 79
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=82.86 E-value=1.2 Score=47.50 Aligned_cols=71 Identities=15% Similarity=0.068 Sum_probs=47.0
Q ss_pred HHHHHHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCCCCCCC-cccEEEeCcHHHHHHHHHHhCC
Q 016025 319 KAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD-LTTLKISARLGEILPRVLDVGS 390 (396)
Q Consensus 319 ~a~~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~~t~~d~-~a~l~I~~~a~evL~~L~~~~~ 390 (396)
.+.+.++++|++|++|+++..+........ ...+.++|.||.++..... ..++.|.+|+.++|..|.+.++
T Consensus 265 ~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~-~~~~~~~i~id~d~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 336 (530)
T PRK07092 265 KISALLDGHDLVLVIGAPVFTYHVEGPGPH-LPEGAELVQLTDDPGEAAWAPMGDAIVGDIRLALRDLLALLP 336 (530)
T ss_pred HHHHHHhhCCEEEEECCcccccccCCcccc-CCCCCeEEEEeCChHHhcCCCCCCcccCCHHHHHHHHHHhhc
Confidence 455678899999999987422211111000 1225678999988754322 3567889999999999988664
No 80
>PRK11916 electron transfer flavoprotein subunit YdiR; Provisional
Probab=82.73 E-value=2.8 Score=42.08 Aligned_cols=60 Identities=15% Similarity=0.189 Sum_probs=46.0
Q ss_pred hCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCCC-CCCCcccEEEeCcHHHHHHHHHHhCC
Q 016025 326 ECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGET-RADDLTTLKISARLGEILPRVLDVGS 390 (396)
Q Consensus 326 ~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~~t-~~d~~a~l~I~~~a~evL~~L~~~~~ 390 (396)
..+|.|.+|.|..+.=...+ +.-..+|-||.++. ++-+.+|+-|-+|+-++||+|.+.+.
T Consensus 251 ~P~lYiA~GISGAiQH~aGm-----~~s~~IVAIN~Dp~APIF~~ADygiVgD~~~vlP~L~e~l~ 311 (312)
T PRK11916 251 KSDLYLTLGISGQIQHMVGG-----NGAKVIVAINKDKNAPIFNYADYGLVGDIYKVVPALISQLS 311 (312)
T ss_pred CccEEEEeccccHHHHHhhc-----ccCCEEEEECCCCCCCchhhCCeeEeeeHHHHHHHHHHHhh
Confidence 45799999999876532222 11245899999974 67789999999999999999998753
No 81
>cd02753 MopB_Formate-Dh-H Formate dehydrogenase H (Formate-Dh-H) catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons. It is a component of the anaerobic formate hydrogen lyase complex. The E. coli formate dehydrogenase H (Fdh-H) is a monomer composed of a single polypeptide chain with a Mo active site region and a [4Fe-4S] center. Members of the MopB_Formate-Dh-H CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=82.72 E-value=2.6 Score=44.42 Aligned_cols=54 Identities=20% Similarity=0.356 Sum_probs=41.7
Q ss_pred HHHhhCCeEEEEccCcch-h-hHHHHHHHHHHCCCeEEEEcCCCCCCCCcccEEEe
Q 016025 322 EAAKECDAFLVLGSSLMT-M-SAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKIS 375 (396)
Q Consensus 322 ~~~~~aDllLVvGTSl~V-~-pa~~Lv~~a~~~g~~lIiIN~~~t~~d~~a~l~I~ 375 (396)
..++++|++|++|+.... . .....+..++++|+++|.|++..+.....+|.+|.
T Consensus 152 ~d~~~ad~il~~G~n~~~~~~~~~~~i~~a~~~G~k~i~Idp~~s~ta~~Ad~~l~ 207 (512)
T cd02753 152 ADIEEADVILVIGSNTTEAHPVIARRIKRAKRNGAKLIVADPRRTELARFADLHLQ 207 (512)
T ss_pred HHHHhCCEEEEECCChhhhhHHHHHHHHHHHHCCCeEEEEcCCCccchHhhCeeeC
Confidence 356699999999997644 2 23344556778999999999999888778888775
No 82
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=82.60 E-value=1.2 Score=31.21 Aligned_cols=14 Identities=36% Similarity=0.982 Sum_probs=11.1
Q ss_pred cceeeeCCCCcccc
Q 016025 222 VYTVVCLDCGFSFC 235 (396)
Q Consensus 222 l~~~~C~~C~~~~~ 235 (396)
++..+|.+|++.+.
T Consensus 3 ~Yey~C~~Cg~~fe 16 (42)
T PF09723_consen 3 IYEYRCEECGHEFE 16 (42)
T ss_pred CEEEEeCCCCCEEE
Confidence 45789999998764
No 83
>PRK03363 fixB putative electron transfer flavoprotein FixB; Provisional
Probab=82.26 E-value=3 Score=41.81 Aligned_cols=60 Identities=18% Similarity=0.151 Sum_probs=46.3
Q ss_pred hCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCCC-CCCCcccEEEeCcHHHHHHHHHHhCC
Q 016025 326 ECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGET-RADDLTTLKISARLGEILPRVLDVGS 390 (396)
Q Consensus 326 ~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~~t-~~d~~a~l~I~~~a~evL~~L~~~~~ 390 (396)
..+|.|.+|.|..+.=...+ +.-..+|-||.++. ++-+.+|+-|-+|+-++||+|.+.+.
T Consensus 252 ~P~lYiA~GISGaiQH~~Gm-----~~s~~IVAIN~Dp~APIF~~ADygiVgD~~eilP~L~e~l~ 312 (313)
T PRK03363 252 KPELYLAVGISGQIQHMVGA-----NASQTIFAINKDKNAPIFQYADYGIVGDAVKILPALTAALA 312 (313)
T ss_pred CccEEEEEccccHHHHHhhc-----ccCCEEEEEcCCCCCCchhhCCeeEeeeHHHHHHHHHHHhh
Confidence 45799999999877532222 12245899999974 67789999999999999999998753
No 84
>cd02752 MopB_Formate-Dh-Na-like Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. Members of the MopB_Formate-Dh-Na-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=81.59 E-value=3 Score=45.88 Aligned_cols=56 Identities=23% Similarity=0.391 Sum_probs=42.6
Q ss_pred HHHhhCCeEEEEccCcch-hhH-HHHHHHHHHC-CCeEEEEcCCCCCCCCcccEEEeCc
Q 016025 322 EAAKECDAFLVLGSSLMT-MSA-YRLVRAAHEA-GSTIAIVNVGETRADDLTTLKISAR 377 (396)
Q Consensus 322 ~~~~~aDllLVvGTSl~V-~pa-~~Lv~~a~~~-g~~lIiIN~~~t~~d~~a~l~I~~~ 377 (396)
..++++|++|++|+.... .|. ...+..|+++ |+++|.|++..|+....+|+.+.-+
T Consensus 165 ~Di~nAd~Ili~GsNpae~hPv~~~~i~~Ak~~~GaklIvVDPR~t~Ta~~AD~~l~ir 223 (649)
T cd02752 165 NDIKNADVILVMGGNPAEAHPVSFKWILEAKEKNGAKLIVVDPRFTRTAAKADLYVPIR 223 (649)
T ss_pred HHHhcCCEEEEECCChHHhCcHHHHHHHHHHHcCCCeEEEEcCCCCchhHhcCEeeCcC
Confidence 356889999999998653 453 4445566665 9999999999998888888876544
No 85
>cd00368 Molybdopterin-Binding Molybdopterin-Binding (MopB) domain of the MopB superfamily of proteins, a large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor. The MopB domain is found in a wide variety of molybdenum- and tungsten-containing enzymes, including formate dehydrogenase-H (Fdh-H) and -N (Fdh-N), several forms of nitrate reductase (Nap, Nas, NarG), dimethylsulfoxide reductase (DMSOR), thiosulfate reductase, formylmethanofuran dehydrogenase, and arsenite oxidase. Molybdenum is present in most of these enzymes in the form of molybdopterin, a modified pterin ring with a dithiolene side chain, which is responsible for ligating the Mo. In many bacterial and archaeal species, molybdopterin is in the form of a dinucleotide, with two molybdopterin dinucleotide units per molybdenum. These proteins can function as monomers, heterodimers, or heterotrimers, depending on the protein and organism. Also included in the MopB superfamily is
Probab=81.45 E-value=3.4 Score=41.17 Aligned_cols=54 Identities=15% Similarity=0.213 Sum_probs=40.3
Q ss_pred HHHhhCCeEEEEccCcch-hh-HHHHHHHHHHCCCeEEEEcCCCCCCCCcccEEEe
Q 016025 322 EAAKECDAFLVLGSSLMT-MS-AYRLVRAAHEAGSTIAIVNVGETRADDLTTLKIS 375 (396)
Q Consensus 322 ~~~~~aDllLVvGTSl~V-~p-a~~Lv~~a~~~g~~lIiIN~~~t~~d~~a~l~I~ 375 (396)
..++++|++|++|+.... .| ....+..++++|+++|.|++..+.....++.+|.
T Consensus 152 ~d~~~ad~il~~G~n~~~~~~~~~~~~~~a~~~g~kvv~idp~~s~t~~~ad~~i~ 207 (374)
T cd00368 152 ADIENADLILLWGSNPAETHPVLAARLRRAKKRGAKLIVIDPRRTETAAKADEWLP 207 (374)
T ss_pred HHHhhCCEEEEEcCChHHhChHHHHHHHHHHHCCCeEEEEcCCCCcchHhhCEeeC
Confidence 345699999999987654 33 3444556777899999999998877667777653
No 86
>TIGR03479 DMSO_red_II_alp DMSO reductase family type II enzyme, molybdopterin subunit. This model represents the molybdopterin subunit, typically called the alpha subunit, of various proteins that also contain an iron-sulfur subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase, ethylbenzene dehydrogenase, and an archaeal respiratory nitrate reductase. This alpha subunit has a twin-arginine translocation (TAT) signal for Sec-independent translocation across the plasma membrane.
Probab=81.22 E-value=3.5 Score=47.13 Aligned_cols=57 Identities=12% Similarity=0.147 Sum_probs=44.7
Q ss_pred HHHHhhCCeEEEEccCcch--hhHHHHHHHHHHCCCeEEEEcCCCCCCCCcccEEEeCc
Q 016025 321 MEAAKECDAFLVLGSSLMT--MSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISAR 377 (396)
Q Consensus 321 ~~~~~~aDllLVvGTSl~V--~pa~~Lv~~a~~~g~~lIiIN~~~t~~d~~a~l~I~~~ 377 (396)
...+.++|++|++|+.... .+....+.+|+++|+++|.|++..+.....+|.+|.-+
T Consensus 219 ~~D~~na~~Il~~G~Np~~t~~~~~~~l~~a~~~GaklVvIdPr~t~tA~~AD~wlpir 277 (912)
T TIGR03479 219 SDDWFNADYIIMWGSNPSVTRIPDAHFLSEARYNGARVVSIAPDYNPSTIHADLWLPVR 277 (912)
T ss_pred hhhhhcCcEEEEecCChHHcCCchHHHHHHHHhcCCeEEEECCCCChhhhhCCeecCCC
Confidence 3455789999999997654 34566667788899999999999988888888876433
No 87
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=81.17 E-value=4.2 Score=43.61 Aligned_cols=62 Identities=19% Similarity=0.239 Sum_probs=44.1
Q ss_pred HHHHHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCCCCCCC--cccEEEeCcHHHHHHH
Q 016025 320 AMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPR 384 (396)
Q Consensus 320 a~~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~~t~~d~--~a~l~I~~~a~evL~~ 384 (396)
+.+.+++||++|+||+.+.......+.. ....++|.|+.++...+. ..++.|.+++.++|..
T Consensus 280 ~~~~l~~aD~vl~vG~~l~~~~~~~~~~---~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~ 343 (568)
T PRK07449 280 AAEELLQPDIVIQFGSPPTSKRLLQWLA---DCEPEYWVVDPGPGRLDPAHHATRRLTASVATWLEA 343 (568)
T ss_pred hhhhcCCCCEEEEeCCCCCchhHHHHHh---cCCCCEEEECCCCCcCCCCCCceEEEEEcHHHHHHh
Confidence 4467789999999999985433222211 123489999998876654 4567899999999886
No 88
>cd02767 MopB_ydeP The MopB_ydeP CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=80.87 E-value=4.1 Score=44.13 Aligned_cols=43 Identities=21% Similarity=0.307 Sum_probs=32.9
Q ss_pred HHHhhCCeEEEEccCcch-hh-HHHHHHHHHHCCCeEEEEcCCCC
Q 016025 322 EAAKECDAFLVLGSSLMT-MS-AYRLVRAAHEAGSTIAIVNVGET 364 (396)
Q Consensus 322 ~~~~~aDllLVvGTSl~V-~p-a~~Lv~~a~~~g~~lIiIN~~~t 364 (396)
+.+.++|++|++|+...+ .| ....+..++++|+++|.||+-.+
T Consensus 159 ~Di~~ad~Il~~G~Np~~~~p~~~~~l~~A~~rGakIIvIdP~~~ 203 (574)
T cd02767 159 EDFEHTDLIFFIGQNPGTNHPRMLHYLREAKKRGGKIIVINPLRE 203 (574)
T ss_pred HHHhcCCEEEEEcCChhhhcHHHHHHHHHHHHCCCEEEEECCCcc
Confidence 456789999999997544 33 34445678889999999999764
No 89
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=80.75 E-value=0.85 Score=48.68 Aligned_cols=68 Identities=15% Similarity=0.148 Sum_probs=43.9
Q ss_pred HHHHHHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCCCCCCC--cccEEEeCcHHHHHHHHHHhC
Q 016025 319 KAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVG 389 (396)
Q Consensus 319 ~a~~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~~t~~d~--~a~l~I~~~a~evL~~L~~~~ 389 (396)
.+.+.+++||++|+||++|............. ..++|.||.+...... ..++.| +|+..+|.+|++.+
T Consensus 265 ~~~~~~~~aDlvl~lG~~l~~~~~~~~~~~~~--~~~~I~id~~~~~~~~~~~~~~~i-~D~~~~l~~l~~~l 334 (539)
T TIGR03393 265 AVKEAIEGADAVICVGVRFTDTITAGFTHQLT--PEQTIDVQPHAARVGNVWFTGIPM-NDAIETLVELCEHA 334 (539)
T ss_pred HHHHHHhhCCEEEEECCcccccccceeeccCC--cccEEEEcCCeEEECceEeCCcCH-HHHHHHHHHHhhhc
Confidence 35567789999999999986433211110011 2468888887654432 234455 89999999998765
No 90
>cd02755 MopB_Thiosulfate-R-like The MopB_Thiosulfate-R-like CD contains thiosulfate-, sulfur-, and polysulfide-reductases, and other related proteins. Thiosulfate reductase catalyzes the cleavage of sulfur-sulfur bonds in thiosulfate. Polysulfide reductase is a membrane-bound enzyme that catalyzes the reduction of polysulfide using either hydrogen or formate as the electron donor. Members of the MopB_Thiosulfate-R-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=80.68 E-value=2.3 Score=44.35 Aligned_cols=55 Identities=15% Similarity=0.183 Sum_probs=41.6
Q ss_pred HHhhCCeEEEEccCcchh---hHHHHHHHHHHCCCeEEEEcCCCCCCCCcccEEEeCc
Q 016025 323 AAKECDAFLVLGSSLMTM---SAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISAR 377 (396)
Q Consensus 323 ~~~~aDllLVvGTSl~V~---pa~~Lv~~a~~~g~~lIiIN~~~t~~d~~a~l~I~~~ 377 (396)
.+.++|++|++|+..... +....+..++++|+++|.|++..+.....+|.+|.-+
T Consensus 153 d~~~ad~il~~G~n~~~~~~~~~~~~~~~a~~~g~kiivIdPr~t~ta~~AD~~i~i~ 210 (454)
T cd02755 153 DFENARYIILFGRNLAEAIIVVDARRLMKALENGAKVVVVDPRFSELASKADEWIPIK 210 (454)
T ss_pred chhcCCEEEEECcCcccccccHHHHHHHHHHHCCCeEEEECCCCChhhHhhCEecCCC
Confidence 456899999999975432 2344455677889999999999988877888876433
No 91
>PLN00022 electron transfer flavoprotein subunit alpha; Provisional
Probab=80.64 E-value=3 Score=42.61 Aligned_cols=60 Identities=15% Similarity=0.173 Sum_probs=46.5
Q ss_pred hCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCCC-CCCCcccEEEeCcHHHHHHHHHHhCC
Q 016025 326 ECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGET-RADDLTTLKISARLGEILPRVLDVGS 390 (396)
Q Consensus 326 ~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~~t-~~d~~a~l~I~~~a~evL~~L~~~~~ 390 (396)
..+|.|.+|.|..+.=...+ +.-..+|-||.++. ++-+.+|+-|-+|+-++||+|.+.+.
T Consensus 293 ~P~lYIA~GISGAiQH~~Gm-----~~s~~IVAIN~D~~APIF~~ADygIVgD~~evlP~Lie~lk 353 (356)
T PLN00022 293 APELYIAVGISGAIQHLAGM-----KDSKVIVAINKDADAPIFQVADYGLVADLFEAVPELLEKLP 353 (356)
T ss_pred CCcEEEEEecchHHHHHhhc-----ccCCEEEEECCCCCCCchhhcCeeEeeeHHHHHHHHHHHHH
Confidence 56799999999877532222 11235899999974 67889999999999999999998754
No 92
>TIGR01553 formate-DH-alph formate dehydrogenase, alpha subunit, proteobacterial-type. This model is well-defined, with a large, unpopulated trusted/noise gap.
Probab=80.44 E-value=3.5 Score=47.69 Aligned_cols=56 Identities=20% Similarity=0.293 Sum_probs=43.4
Q ss_pred HHHhhCCeEEEEccCcch-hh-HHHHHHHHHHCCCeEEEEcCCCCCCCCcccEEEeCc
Q 016025 322 EAAKECDAFLVLGSSLMT-MS-AYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISAR 377 (396)
Q Consensus 322 ~~~~~aDllLVvGTSl~V-~p-a~~Lv~~a~~~g~~lIiIN~~~t~~d~~a~l~I~~~ 377 (396)
..+.++|++|++|+.... .| ..+.+..|+++|+++|.||+..+.....+|++|.-+
T Consensus 217 ~Di~~Ad~Ilv~G~Np~es~p~~~~~i~~Ak~~GakiIvIDPR~t~tA~~AD~~l~ir 274 (1009)
T TIGR01553 217 VDIKNSDLILVMGGNPAENHPIGFKWAIRAKKKGAKIIHIDPRFNRTATVADLYAPIR 274 (1009)
T ss_pred HHHHhCCEEEEECCChhhhChHHHHHHHHHHHcCCEEEEEcCCCCchhHhhccEeCCC
Confidence 456799999999997643 44 345556788899999999999988878888776544
No 93
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=80.15 E-value=0.98 Score=30.52 Aligned_cols=12 Identities=33% Similarity=0.778 Sum_probs=9.4
Q ss_pred eeeeCCCCcccc
Q 016025 224 TVVCLDCGFSFC 235 (396)
Q Consensus 224 ~~~C~~C~~~~~ 235 (396)
.+.|++|+..|.
T Consensus 2 ~~~CP~C~~~~~ 13 (38)
T TIGR02098 2 RIQCPNCKTSFR 13 (38)
T ss_pred EEECCCCCCEEE
Confidence 468999998764
No 94
>cd02762 MopB_1 The MopB_1 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=79.74 E-value=5.1 Score=42.73 Aligned_cols=56 Identities=18% Similarity=0.339 Sum_probs=42.4
Q ss_pred HHHhhCCeEEEEccCcchh-h-------HHHHHHHHHHCCCeEEEEcCCCCCCCCcccEEEeCc
Q 016025 322 EAAKECDAFLVLGSSLMTM-S-------AYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISAR 377 (396)
Q Consensus 322 ~~~~~aDllLVvGTSl~V~-p-------a~~Lv~~a~~~g~~lIiIN~~~t~~d~~a~l~I~~~ 377 (396)
+.+.++|++|++|+..... | .......++++|+++|.|++..+.....+|.+|.-+
T Consensus 152 ~D~~~ad~il~~G~N~~~s~~~~~~~~~~~~~~~~a~~~G~kliviDPr~t~ta~~AD~~l~ir 215 (539)
T cd02762 152 PDIDRTDYLLILGANPLQSNGSLRTAPDRVLRLKAAKDRGGSLVVIDPRRTETAKLADEHLFVR 215 (539)
T ss_pred hhhhhCCEEEEEecChHhhCCccccccCHHHHHHHHHhCCCEEEEECCCCchhhHhcCEeeCcC
Confidence 3567999999999875542 1 223556678899999999999988888888876544
No 95
>cd02754 MopB_Nitrate-R-NapA-like Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite. Monomeric Nas is located in the cytoplasm and participates in nitrogen assimilation. Dimeric Nap is located in the periplasm and is coupled to quinol oxidation via a membrane-anchored tetraheme cytochrome. Members of the MopB_Nitrate-R-NapA CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=79.61 E-value=3.6 Score=43.96 Aligned_cols=56 Identities=25% Similarity=0.520 Sum_probs=41.8
Q ss_pred HHHhhCCeEEEEccCcch-hh-HHHHHHHHHHC--CCeEEEEcCCCCCCCCcccEEEeCc
Q 016025 322 EAAKECDAFLVLGSSLMT-MS-AYRLVRAAHEA--GSTIAIVNVGETRADDLTTLKISAR 377 (396)
Q Consensus 322 ~~~~~aDllLVvGTSl~V-~p-a~~Lv~~a~~~--g~~lIiIN~~~t~~d~~a~l~I~~~ 377 (396)
+.+.++|++|++|+.... .| ....+..++++ |+++|.|++..+.....++.+|.-+
T Consensus 153 ~Di~~ad~Il~~G~n~~~s~~~~~~~~~~a~~~~~G~klividP~~t~ta~~Ad~~l~i~ 212 (565)
T cd02754 153 DDIEHADCFFLIGSNMAECHPILFRRLLDRKKANPGAKIIVVDPRRTRTADIADLHLPIR 212 (565)
T ss_pred HHHhhCCEEEEECCChhhhhhHHHHHHHHHHhcCCCCEEEEEcCCCCcchHHhCeeeCCC
Confidence 355799999999998654 22 33445567767 9999999999988877888776433
No 96
>PF09845 DUF2072: Zn-ribbon containing protein (DUF2072); InterPro: IPR018645 This archaeal Zinc-ribbon containing proteins have no known function.
Probab=79.48 E-value=0.89 Score=39.79 Aligned_cols=11 Identities=36% Similarity=0.760 Sum_probs=9.1
Q ss_pred eeeCCCCcccc
Q 016025 225 VVCLDCGFSFC 235 (396)
Q Consensus 225 ~~C~~C~~~~~ 235 (396)
.+|++|++.|.
T Consensus 2 H~Ct~Cg~~f~ 12 (131)
T PF09845_consen 2 HQCTKCGRVFE 12 (131)
T ss_pred cccCcCCCCcC
Confidence 38999999874
No 97
>cd02770 MopB_DmsA-EC This CD (MopB_DmsA-EC) includes the DmsA enzyme of the dmsABC operon encoding the anaerobic dimethylsulfoxide reductase (DMSOR) of Escherichia coli and other related DMSOR-like enzymes. Unlike other DMSOR-like enzymes, this group has a predicted N-terminal iron-sulfur [4Fe-4S] cluster binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=78.27 E-value=7.9 Score=42.08 Aligned_cols=56 Identities=16% Similarity=0.186 Sum_probs=41.9
Q ss_pred HHHhhCCeEEEEccCcch-hh----HHHHHHHHHHCCCeEEEEcCCCCCCCC-cccEEEeCc
Q 016025 322 EAAKECDAFLVLGSSLMT-MS----AYRLVRAAHEAGSTIAIVNVGETRADD-LTTLKISAR 377 (396)
Q Consensus 322 ~~~~~aDllLVvGTSl~V-~p----a~~Lv~~a~~~g~~lIiIN~~~t~~d~-~a~l~I~~~ 377 (396)
+.+.+||++|++|+.... .+ ....+..++++|+++|.|++..+.... .+|.+|.=+
T Consensus 162 ~D~~~a~~ii~wG~N~~~~~~~~~~~~~~~~~a~~~G~klivIDPr~t~tA~~~AD~~i~ir 223 (617)
T cd02770 162 DDLKDSKLVVLFGHNPAETRMGGGGSTYYYLQAKKAGAKFIVIDPRYTDTAVTLADEWIPIR 223 (617)
T ss_pred HHHhcCCEEEEECCCHHHhcCCCCchHHHHHHHHHcCCeEEEECCCCCccccccCCEEECCC
Confidence 455689999999987654 22 244556788899999999999988774 678776433
No 98
>TIGR03844 cysteate_syn cysteate synthase. Members of this family are cysteate synthase, an enzyme of alternate pathway to sulfopyruvate, a precursor of coenzyme M.
Probab=78.18 E-value=5.4 Score=41.26 Aligned_cols=13 Identities=38% Similarity=0.807 Sum_probs=10.4
Q ss_pred ceeeeCCCCcccc
Q 016025 223 YTVVCLDCGFSFC 235 (396)
Q Consensus 223 ~~~~C~~C~~~~~ 235 (396)
+.++|..|++.|+
T Consensus 1 ~~l~C~~Cg~~~~ 13 (398)
T TIGR03844 1 YTLRCPGCGEVLP 13 (398)
T ss_pred CEEEeCCCCCccC
Confidence 3678999998875
No 99
>PRK09939 putative oxidoreductase; Provisional
Probab=77.38 E-value=5.5 Score=44.67 Aligned_cols=43 Identities=21% Similarity=0.323 Sum_probs=32.6
Q ss_pred HHHhhCCeEEEEccCcch-hh-HHHHHHHHHHCCCeEEEEcCCCC
Q 016025 322 EAAKECDAFLVLGSSLMT-MS-AYRLVRAAHEAGSTIAIVNVGET 364 (396)
Q Consensus 322 ~~~~~aDllLVvGTSl~V-~p-a~~Lv~~a~~~g~~lIiIN~~~t 364 (396)
+.+++||++|++|+...+ .| ....+..++++|+++|.||+-.+
T Consensus 204 ~Di~~ad~Ili~G~Np~~~hP~~~~~l~~a~~rGakiIvIDPr~~ 248 (759)
T PRK09939 204 EDFEKCDLVICIGHNPGTNHPRMLTSLRALVKRGAKMIAINPLQE 248 (759)
T ss_pred HHHhhCCEEEEeCCChHHHHHHHHHHHHHHHHCCCEEEEECCCCc
Confidence 456799999999987654 44 33444567889999999999664
No 100
>cd02763 MopB_2 The MopB_2 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=77.07 E-value=5 Score=44.45 Aligned_cols=56 Identities=11% Similarity=0.084 Sum_probs=42.5
Q ss_pred HHHhhCCeEEEEccCcch--hhHHHHHHHHHHCCCeEEEEcCCCCCCCCcccEEEeCc
Q 016025 322 EAAKECDAFLVLGSSLMT--MSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISAR 377 (396)
Q Consensus 322 ~~~~~aDllLVvGTSl~V--~pa~~Lv~~a~~~g~~lIiIN~~~t~~d~~a~l~I~~~ 377 (396)
..+++||++|++|+.... .|+..-+..++++|+++|.||+..+.....+|.+|.-+
T Consensus 151 ~D~~~Ad~Ivl~G~n~~~~~~p~~~~i~~ak~~GaKlIvIDPr~t~ta~~AD~wl~ir 208 (679)
T cd02763 151 PDLEHTKYFMMIGVAEDHHSNPFKIGIQKLKRRGGKFVAVNPVRTGYAAIADEWVPIK 208 (679)
T ss_pred hHHHhCCEEEEECCCCcccCchHHHHHHHHHhCCCcEEEEcCcCCcchHhhCeecCcC
Confidence 466799999999985432 34555556677889999999999988877888876544
No 101
>TIGR01591 Fdh-alpha formate dehydrogenase, alpha subunit, archaeal-type. This model is well-defined, with only a single fragmentary sequence falling between trusted and noise. The alpha subunit of a version of nitrate reductase is closely related.
Probab=76.99 E-value=4.3 Score=44.30 Aligned_cols=54 Identities=15% Similarity=0.350 Sum_probs=41.0
Q ss_pred HHHhhCCeEEEEccCcch-hh-HHHHHHHHHHCCCeEEEEcCCCCCCCCcccEEEe
Q 016025 322 EAAKECDAFLVLGSSLMT-MS-AYRLVRAAHEAGSTIAIVNVGETRADDLTTLKIS 375 (396)
Q Consensus 322 ~~~~~aDllLVvGTSl~V-~p-a~~Lv~~a~~~g~~lIiIN~~~t~~d~~a~l~I~ 375 (396)
+.++++|++|++|+.... .| ....+..++++|+++|.|++..+.....++.+|.
T Consensus 151 ~di~~ad~il~~G~n~~~~~~~~~~~i~~a~~~G~klvvidp~~s~ta~~ad~~i~ 206 (671)
T TIGR01591 151 SEIENADLIVIIGYNPAESHPVVAQYLKNAKRNGAKIIVIDPRKTETAKIADLHIP 206 (671)
T ss_pred HHHHhCCEEEEECCChhhccCHHHHHHHHHHHCCCeEEEECCCCChhhHhhCcccC
Confidence 357789999999997543 33 3455666778999999999998877777776653
No 102
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=76.83 E-value=2.1 Score=29.07 Aligned_cols=13 Identities=23% Similarity=0.644 Sum_probs=10.4
Q ss_pred eeeeCCCCcccch
Q 016025 224 TVVCLDCGFSFCR 236 (396)
Q Consensus 224 ~~~C~~C~~~~~~ 236 (396)
+..|.+|++.|..
T Consensus 1 Rr~C~~Cg~~Yh~ 13 (36)
T PF05191_consen 1 RRICPKCGRIYHI 13 (36)
T ss_dssp EEEETTTTEEEET
T ss_pred CcCcCCCCCcccc
Confidence 3579999999864
No 103
>PRK06260 threonine synthase; Validated
Probab=75.91 E-value=1.8 Score=44.45 Aligned_cols=13 Identities=31% Similarity=0.981 Sum_probs=10.9
Q ss_pred ceeeeCCCCcccc
Q 016025 223 YTVVCLDCGFSFC 235 (396)
Q Consensus 223 ~~~~C~~C~~~~~ 235 (396)
+.++|..|++.|+
T Consensus 2 ~~~~C~~cg~~~~ 14 (397)
T PRK06260 2 YWLKCIECGKEYD 14 (397)
T ss_pred CEEEECCCCCCCC
Confidence 4689999999875
No 104
>TIGR00509 bisC_fam molybdopterin guanine dinucleotide-containing S/N-oxide reductases. This enzyme family shares sequence similarity and a requirement for a molydenum cofactor as the only prosthetic group. The form of the cofactor is a single molybdenum atom coordinated by two molybdopterin guanine dinucleotide molecules. Members of the family include biotin sulfoxide reductase, dimethylsulfoxide reductase, and trimethylamine-N-oxide reductase, although a single member may show all those activities and related activities; it may not be possible to resolve the primary function for members of this family by sequence comparison alone. A number of similar molybdoproteins in which the N-terminal region contains a CXXXC motif and may bind an iron-sulfur cluster are excluded from this set, including formate dehydrogenases and nitrate reductases. Also excluded is the A chain of a heteromeric, anaerobic DMSO reductase, which also contains the CXXXC motif.
Probab=75.81 E-value=5.2 Score=44.69 Aligned_cols=52 Identities=10% Similarity=0.235 Sum_probs=40.3
Q ss_pred HhhCCeEEEEccCcchh----------hHHHHHHHHHHCCCeEEEEcCCCCCCCCcc-cEEEe
Q 016025 324 AKECDAFLVLGSSLMTM----------SAYRLVRAAHEAGSTIAIVNVGETRADDLT-TLKIS 375 (396)
Q Consensus 324 ~~~aDllLVvGTSl~V~----------pa~~Lv~~a~~~g~~lIiIN~~~t~~d~~a-~l~I~ 375 (396)
+.++|++|++|+...+. +....+..++++|+++|.|++..|.....+ |++|.
T Consensus 165 ~~~a~~il~~G~Np~~t~~~~~~~~~~~~~~~~~~a~~~G~klIvIDPr~t~tA~~aaD~~l~ 227 (770)
T TIGR00509 165 LENSKVLVLWGADPLKTSQIAWGIPDHGGYEYLERLKAKGKRVISIDPVRTETAEFFGAEWIP 227 (770)
T ss_pred HhcCCEEEEeCCCHHHhCccccccCCcchHHHHHHHHHcCCEEEEEcCCCCcchhhccCeEeC
Confidence 57899999999875542 345666778889999999999998877764 56654
No 105
>PRK12496 hypothetical protein; Provisional
Probab=75.57 E-value=1.7 Score=39.44 Aligned_cols=12 Identities=25% Similarity=0.562 Sum_probs=9.7
Q ss_pred eeeeCCCCcccc
Q 016025 224 TVVCLDCGFSFC 235 (396)
Q Consensus 224 ~~~C~~C~~~~~ 235 (396)
..+|..|++.|+
T Consensus 127 ~~~C~gC~~~~~ 138 (164)
T PRK12496 127 RKVCKGCKKKYP 138 (164)
T ss_pred eEECCCCCcccc
Confidence 367999998875
No 106
>COG2025 FixB Electron transfer flavoprotein, alpha subunit [Energy production and conversion]
Probab=75.24 E-value=6.5 Score=39.48 Aligned_cols=60 Identities=15% Similarity=0.179 Sum_probs=47.0
Q ss_pred hCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCCC-CCCCcccEEEeCcHHHHHHHHHHhCC
Q 016025 326 ECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGET-RADDLTTLKISARLGEILPRVLDVGS 390 (396)
Q Consensus 326 ~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~~t-~~d~~a~l~I~~~a~evL~~L~~~~~ 390 (396)
..+|.|.+|-|..+.=...+ +.-..+|-||.++. +.-+.+|+-|-+|.-+++|+|.+.++
T Consensus 251 ~P~LYIA~GISGAiQHlaGm-----~~Sk~IVAINkD~nAPIF~~ADyGiVgDl~~ivP~Lie~l~ 311 (313)
T COG2025 251 APKLYIALGISGAIQHLAGM-----KDSKVIVAINKDPNAPIFQVADYGIVGDLFKIVPALIEALK 311 (313)
T ss_pred cccEEEEEecccHHHHHhhc-----ccCcEEEEEcCCCCCCccccCCeeeeeeHHHHHHHHHHHHh
Confidence 56899999999987633332 12246888999974 67789999999999999999998764
No 107
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=75.12 E-value=2.2 Score=30.21 Aligned_cols=12 Identities=25% Similarity=0.537 Sum_probs=9.3
Q ss_pred eeeeCCCCcccc
Q 016025 224 TVVCLDCGFSFC 235 (396)
Q Consensus 224 ~~~C~~C~~~~~ 235 (396)
..+|.+|+..+.
T Consensus 3 ~y~C~~CG~~~~ 14 (46)
T PRK00398 3 EYKCARCGREVE 14 (46)
T ss_pred EEECCCCCCEEE
Confidence 568999998653
No 108
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=75.10 E-value=7.1 Score=32.72 Aligned_cols=55 Identities=13% Similarity=0.146 Sum_probs=44.6
Q ss_pred HHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcC-CCCCCCCcccEEEeCc
Q 016025 323 AAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNV-GETRADDLTTLKISAR 377 (396)
Q Consensus 323 ~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~-~~t~~d~~a~l~I~~~ 377 (396)
.+.+-|++|++.-|..+.-..+.++.++++|+++|.|=- ...++.+.+++.|...
T Consensus 44 ~~~~~d~vi~iS~sG~t~~~~~~~~~a~~~g~~vi~iT~~~~s~la~~ad~~l~~~ 99 (128)
T cd05014 44 MVTPGDVVIAISNSGETDELLNLLPHLKRRGAPIIAITGNPNSTLAKLSDVVLDLP 99 (128)
T ss_pred cCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCCchhhhCCEEEECC
Confidence 456789999999999999999999999999998776644 4567777888877654
No 109
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=75.01 E-value=2 Score=29.16 Aligned_cols=13 Identities=15% Similarity=0.562 Sum_probs=10.3
Q ss_pred eeeeCCCCcccch
Q 016025 224 TVVCLDCGFSFCR 236 (396)
Q Consensus 224 ~~~C~~C~~~~~~ 236 (396)
...|.+|+..|..
T Consensus 2 ~i~Cp~C~~~y~i 14 (36)
T PF13717_consen 2 IITCPNCQAKYEI 14 (36)
T ss_pred EEECCCCCCEEeC
Confidence 4689999998854
No 110
>PRK13937 phosphoheptose isomerase; Provisional
Probab=74.98 E-value=7.8 Score=35.56 Aligned_cols=55 Identities=11% Similarity=0.089 Sum_probs=45.5
Q ss_pred HHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEE-cCCCCCCCCcccEEEeCc
Q 016025 323 AAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIV-NVGETRADDLTTLKISAR 377 (396)
Q Consensus 323 ~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiI-N~~~t~~d~~a~l~I~~~ 377 (396)
.+.+-|++|++-.|..+.-....++.++++|+++|.| +...++....+|+.|.-.
T Consensus 103 ~~~~~Dl~i~iS~sG~t~~~~~~~~~ak~~g~~~I~iT~~~~s~L~~~ad~~l~~~ 158 (188)
T PRK13937 103 LGRPGDVLIGISTSGNSPNVLAALEKARELGMKTIGLTGRDGGKMKELCDHLLIVP 158 (188)
T ss_pred hCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEeCCCCChhHHhCCEEEEeC
Confidence 4567899999999999998999999999999998777 556677777888877543
No 111
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=74.87 E-value=4.9 Score=42.39 Aligned_cols=70 Identities=20% Similarity=0.145 Sum_probs=50.4
Q ss_pred HHHHHHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCCCCCCCcccEEEeCcHHHHHHHHHHhC
Q 016025 319 KAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVLDVG 389 (396)
Q Consensus 319 ~a~~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~~t~~d~~a~l~I~~~a~evL~~L~~~~ 389 (396)
.|-...++|||+|-|||.++-+-..+-.- ....+.+++-||.++-..-..-.+.+.+|+...|.+|...|
T Consensus 288 AAN~~A~~ADlVigiGTR~~DFTTgS~al-F~~~~~k~l~lNV~~~da~K~~a~~lvaDAr~~L~~L~~~L 357 (617)
T COG3962 288 AANRAAEEADLVIGIGTRLQDFTTGSKAL-FKNPGVKFLNLNVQPFDAYKHDALPLVADARAGLEALSEAL 357 (617)
T ss_pred HHHhhhhhcCEEEEecccccccccccHHH-hcCCCceEEEeecccccccccccceehhHHHHHHHHHHHHh
Confidence 44566789999999999987544333221 12236788889988766656666788999999999987654
No 112
>cd02769 MopB_DMSOR-BSOR-TMAOR The MopB_DMSOR-BSOR-TMAOR CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR), trimethylamine N-oxide reductase (TMAOR) and other related proteins. DMSOR always catalyzes the reduction of DMSO to dimethylsulfide, but its cellular location and oligomerization state are organism-dependent. For example, in Rhodobacter sphaeriodes and Rhodobacter capsulatus, it is an 82-kDa monomeric soluble protein found in the periplasmic space; in E. coli, it is membrane-bound and exists as a heterotrimer. BSOR catalyzes the reduction of biotin sulfixode to biotin, and is unique among Mo enzymes because no additional auxiliary proteins or cofactors are required. TMAOR is similar to DMSOR, but its only natural substrate is TMAO. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=74.79 E-value=9.1 Score=41.63 Aligned_cols=52 Identities=13% Similarity=0.174 Sum_probs=38.4
Q ss_pred HHhhCCeEEEEccCcchh-----------hHHHHHHHHHHCCCeEEEEcCCCCCCCCccc-EEE
Q 016025 323 AAKECDAFLVLGSSLMTM-----------SAYRLVRAAHEAGSTIAIVNVGETRADDLTT-LKI 374 (396)
Q Consensus 323 ~~~~aDllLVvGTSl~V~-----------pa~~Lv~~a~~~g~~lIiIN~~~t~~d~~a~-l~I 374 (396)
.+.++|++|+.|+..... +....+..++++|+++|.|++..|.....++ ++|
T Consensus 167 ~~~~a~~il~wG~Np~~t~~~~~~~~~~~~~~~~~~~ar~~GaklIvIDPr~t~tA~~add~~l 230 (609)
T cd02769 167 IAEHTELVVAFGADPLKNAQIAWGGIPDHQAYSYLKALKDRGIRFISISPLRDDTAAELGAEWI 230 (609)
T ss_pred HHhhCCeEEEECCChHHhCcccccccCCcchHHHHHHHHhCCCEEEEEcCCCCcchhhhcCcEe
Confidence 357999999999875431 2344556788899999999999888766654 443
No 113
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=74.45 E-value=2.2 Score=30.81 Aligned_cols=14 Identities=36% Similarity=0.937 Sum_probs=10.9
Q ss_pred cceeeeCCCCcccc
Q 016025 222 VYTVVCLDCGFSFC 235 (396)
Q Consensus 222 l~~~~C~~C~~~~~ 235 (396)
++..+|.+|++.|.
T Consensus 3 ~Yey~C~~Cg~~fe 16 (52)
T TIGR02605 3 IYEYRCTACGHRFE 16 (52)
T ss_pred CEEEEeCCCCCEeE
Confidence 35679999998764
No 114
>PF00384 Molybdopterin: Molybdopterin oxidoreductase; InterPro: IPR006656 This domain is found in a number of molybdopterin-containing oxidoreductases, tungsten formylmethanofuran dehydrogenase subunit d (FwdD) and molybdenum formylmethanofuran dehydrogenase subunit (FmdD); where a single domain constitutes almost the entire subunit. The formylmethanofuran dehydrogenase catalyses the first step in methane formation from CO2 in methanogenic archaea and has a molybdopterin dinucleotide cofactor []. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1TI2_G 1VLE_M 1VLD_U 1VLF_O 1TI4_I 1TI6_E 3DMR_A 4DMR_A 1H5N_C 1E5V_A ....
Probab=74.36 E-value=4.3 Score=41.32 Aligned_cols=54 Identities=19% Similarity=0.265 Sum_probs=38.6
Q ss_pred HHhhCCeEEEEccCcch-hh-H-HHHHHHHHHCCCeEEEEcCCCCCCCCcccEEEeC
Q 016025 323 AAKECDAFLVLGSSLMT-MS-A-YRLVRAAHEAGSTIAIVNVGETRADDLTTLKISA 376 (396)
Q Consensus 323 ~~~~aDllLVvGTSl~V-~p-a-~~Lv~~a~~~g~~lIiIN~~~t~~d~~a~l~I~~ 376 (396)
.+.++|++|++|+.... .| . .++...++++|+++|.|++..+.....++.+|.-
T Consensus 108 D~~~ad~il~~G~n~~~~~~~~~~~~~~~~~~~g~k~v~vdP~~t~~a~~ad~~i~i 164 (432)
T PF00384_consen 108 DIENADVILIWGANPAESHPHLNARFRKAARKRGAKLVVVDPRRTPTAAKADEWIPI 164 (432)
T ss_dssp GGGH-SEEEEES--HHHHSHHHHHHHHHHHHHCTSEEEEEESSB-HHGGGTSEEEEE
T ss_pred eeeccceEEEcccCccccccccccccccccccCCcceEEEEeccchhhhhccccccc
Confidence 67899999999997765 22 2 4666778888999999999988776677776543
No 115
>cd02760 MopB_Phenylacetyl-CoA-OR The MopB_Phenylacetyl-CoA-OR CD contains the phenylacetyl-CoA:acceptor oxidoreductase, large subunit (PadB2), and other related proteins. The phenylacetyl-CoA:acceptor oxidoreductase has been characterized as a membrane-bound molybdenum-iron-sulfur enzyme involved in anaerobic metabolism of phenylalanine in the denitrifying bacterium Thauera aromatica. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=73.94 E-value=6.6 Score=44.05 Aligned_cols=57 Identities=12% Similarity=0.042 Sum_probs=44.1
Q ss_pred HHHHhhCCeEEEEccCcchh--h-HHHHHHHHHHCCCeEEEEcCCCCCCCCcccEEEeCc
Q 016025 321 MEAAKECDAFLVLGSSLMTM--S-AYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISAR 377 (396)
Q Consensus 321 ~~~~~~aDllLVvGTSl~V~--p-a~~Lv~~a~~~g~~lIiIN~~~t~~d~~a~l~I~~~ 377 (396)
...+.+||++|++|+..... | ..+.+..++++|+++|.|++..+.....++.+|.-+
T Consensus 168 ~~D~~~ad~Il~~G~Np~~s~~~~~~~~~~~ar~~GaKlIvVDPr~t~ta~~AD~wlpir 227 (760)
T cd02760 168 AADTPLANYVISFGSNVEASGGPCAVTRHADARVRGYKRVQVEPHLSVTGACSAEWVPIR 227 (760)
T ss_pred cchHhcCCEEEEECCCchHhcCcHHHHHHHHHHHcCCeEEEEcCCCCcchhhcCeEeCcC
Confidence 34567999999999987432 2 345556678889999999999998888888886544
No 116
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=73.80 E-value=2.1 Score=39.48 Aligned_cols=12 Identities=25% Similarity=0.728 Sum_probs=10.3
Q ss_pred CcCCCCCCcccC
Q 016025 292 PTCQKCNGVLKP 303 (396)
Q Consensus 292 P~Cp~Cgg~LRP 303 (396)
..||.||+.|..
T Consensus 137 F~Cp~Cg~~L~~ 148 (178)
T PRK06266 137 FRCPQCGEMLEE 148 (178)
T ss_pred CcCCCCCCCCee
Confidence 579999999875
No 117
>COG3364 Zn-ribbon containing protein [General function prediction only]
Probab=73.55 E-value=1.4 Score=36.90 Aligned_cols=11 Identities=36% Similarity=0.709 Sum_probs=9.3
Q ss_pred eeeCCCCcccc
Q 016025 225 VVCLDCGFSFC 235 (396)
Q Consensus 225 ~~C~~C~~~~~ 235 (396)
.||++||+.|+
T Consensus 3 H~CtrCG~vf~ 13 (112)
T COG3364 3 HQCTRCGEVFD 13 (112)
T ss_pred ceecccccccc
Confidence 48999999875
No 118
>PRK15488 thiosulfate reductase PhsA; Provisional
Probab=73.13 E-value=10 Score=42.23 Aligned_cols=55 Identities=13% Similarity=0.147 Sum_probs=41.7
Q ss_pred HHhhCCeEEEEccCcch-hh--HHHHHHHHH-HCCCeEEEEcCCCCCCCCcccEEEeCc
Q 016025 323 AAKECDAFLVLGSSLMT-MS--AYRLVRAAH-EAGSTIAIVNVGETRADDLTTLKISAR 377 (396)
Q Consensus 323 ~~~~aDllLVvGTSl~V-~p--a~~Lv~~a~-~~g~~lIiIN~~~t~~d~~a~l~I~~~ 377 (396)
.++++|++|++|+.... .| ..+.+..++ ++|+++|.|++..+.....+|.+|.-+
T Consensus 193 D~~~ad~Il~~G~N~~~~~~~~~~~~~~~a~~~~G~kiivIDPr~s~ta~~Ad~~l~i~ 251 (759)
T PRK15488 193 DLANSKYIINFGHNLYEGINMSDTRGLMTAQMEKGAKLVVFEPRFSVVASKADEWHAIR 251 (759)
T ss_pred CHhhCcEEEEeccChHhcCCcHHHHHHHHHHHhCCCEEEEECCCCCcchhhCCeeeccC
Confidence 45799999999988654 33 334445565 789999999999988888888876544
No 119
>TIGR01701 Fdhalpha-like oxidoreductase alpha (molybdopterin) subunit. This model represents a well-defined clade of oxidoreductase alpha subunits most closely related to a group of formate dehydrogenases including the E. coli FdhH protein (TIGR01591). These alpha subunits contain a molybdopterin cofactor and generally associate with two other subunits which contain iron-sulfur clusters and cytochromes. The particular subunits with which this enzyme interacts and the substrate which is reduced is unknown at this time. In Ralstonia, the gene is associated with the cbb operon, but is not essential for CO2 fixation.
Probab=73.00 E-value=8.9 Score=42.89 Aligned_cols=44 Identities=25% Similarity=0.338 Sum_probs=33.1
Q ss_pred HHHhhCCeEEEEccCcch-hh-HHHHHHHHHHCCCeEEEEcCCCCC
Q 016025 322 EAAKECDAFLVLGSSLMT-MS-AYRLVRAAHEAGSTIAIVNVGETR 365 (396)
Q Consensus 322 ~~~~~aDllLVvGTSl~V-~p-a~~Lv~~a~~~g~~lIiIN~~~t~ 365 (396)
+.++++|++|++|+...+ .| ....+.+++++|+++|.||+-.++
T Consensus 194 ~Di~~ad~Il~~G~Np~~~~p~~~~~l~~a~~rGakiIvIdP~~~~ 239 (743)
T TIGR01701 194 EDFEHTDCLVFIGSNAGTNHPRMLKYLYAAKKRGAKIIAINPLRER 239 (743)
T ss_pred hHHHhCCEEEEEecCcccccHHHHHHHHHHHHCCCEEEEECCCCcc
Confidence 456789999999987543 33 344556788899999999996543
No 120
>PRK05580 primosome assembly protein PriA; Validated
Probab=71.99 E-value=9 Score=42.39 Aligned_cols=9 Identities=22% Similarity=0.918 Sum_probs=7.0
Q ss_pred CcCCCCCCc
Q 016025 292 PTCQKCNGV 300 (396)
Q Consensus 292 P~Cp~Cgg~ 300 (396)
..||+||+.
T Consensus 422 ~~Cp~Cg~~ 430 (679)
T PRK05580 422 KACPECGST 430 (679)
T ss_pred CCCCCCcCC
Confidence 479999874
No 121
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=71.87 E-value=2.4 Score=28.83 Aligned_cols=13 Identities=23% Similarity=0.636 Sum_probs=10.1
Q ss_pred eeeeCCCCcccch
Q 016025 224 TVVCLDCGFSFCR 236 (396)
Q Consensus 224 ~~~C~~C~~~~~~ 236 (396)
..+|++|+..|..
T Consensus 2 ~i~CP~C~~~f~v 14 (37)
T PF13719_consen 2 IITCPNCQTRFRV 14 (37)
T ss_pred EEECCCCCceEEc
Confidence 4689999988753
No 122
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=71.82 E-value=2.3 Score=45.55 Aligned_cols=68 Identities=15% Similarity=0.001 Sum_probs=42.2
Q ss_pred HHHHHHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCCCCCCC--cccEEEeCcHHHHHHHHHHhC
Q 016025 319 KAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVG 389 (396)
Q Consensus 319 ~a~~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~~t~~d~--~a~l~I~~~a~evL~~L~~~~ 389 (396)
.+.+.+++||++|+||+++..+...... ....+.++|.|+.++..... ..++.+ .++.+.|.+|++.+
T Consensus 261 ~~~~~l~~aDliL~iG~~l~~~~~~~~~--~~~~~~~~I~id~~~~~~~~~~~~~~~i-~d~~~~L~~l~~~~ 330 (535)
T TIGR03394 261 ELSRLVEESDGLLLLGVILSDTNFAVSQ--RKIDLRRTIHAFDRAVTLGYHVYADIPL-AGLVDALLALLCGL 330 (535)
T ss_pred HHHHHHHhCCEEEEECCccccccccccc--ccCCCCcEEEEeCCEEEECCeeECCccH-HHHHHHHHHhhhcc
Confidence 3456778999999999998754221100 01124578888876654333 245556 56777887776654
No 123
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=71.47 E-value=23 Score=29.93 Aligned_cols=65 Identities=12% Similarity=0.009 Sum_probs=42.1
Q ss_pred hhCCeEEEEccCcchhhHHHHHHHHHHCC--CeEEEEcCCCCC------CCCcccEEEeCcHHHHHHHHHHhC
Q 016025 325 KECDAFLVLGSSLMTMSAYRLVRAAHEAG--STIAIVNVGETR------ADDLTTLKISARLGEILPRVLDVG 389 (396)
Q Consensus 325 ~~aDllLVvGTSl~V~pa~~Lv~~a~~~g--~~lIiIN~~~t~------~d~~a~l~I~~~a~evL~~L~~~~ 389 (396)
.+.|++.+=..+.+...+..+.+..++.+ ++++.-....+. ....+|+.+.|..+..+++|++.+
T Consensus 38 ~~pdiv~~S~~~~~~~~~~~~~~~ik~~~p~~~iv~GG~~~t~~p~~~~~~~~~D~vv~GEgE~~~~~l~~~l 110 (127)
T cd02068 38 LKPDVVGISLMTSAIYEALELAKIAKEVLPNVIVVVGGPHATFFPEEILEEPGVDFVVIGEGEETFLKLLEEL 110 (127)
T ss_pred cCCCEEEEeeccccHHHHHHHHHHHHHHCCCCEEEECCcchhhCHHHHhcCCCCCEEEECCcHHHHHHHHHHH
Confidence 56777766555554455666666666654 444444433321 234578999999999999999764
No 124
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=71.11 E-value=8.4 Score=41.82 Aligned_cols=56 Identities=16% Similarity=0.254 Sum_probs=39.3
Q ss_pred HHHHhhCCeEEEEccCcch-hh-HHHHHHHHHHCC-CeEEEEcCCCCCCCCcccEEEeC
Q 016025 321 MEAAKECDAFLVLGSSLMT-MS-AYRLVRAAHEAG-STIAIVNVGETRADDLTTLKISA 376 (396)
Q Consensus 321 ~~~~~~aDllLVvGTSl~V-~p-a~~Lv~~a~~~g-~~lIiIN~~~t~~d~~a~l~I~~ 376 (396)
...++++|++|++|+.... .| ....+..+.++| +++|.|++..+.....++.++.-
T Consensus 357 ~~di~~ad~il~~G~N~~~s~p~~~~~i~~a~~~ggaklividpr~s~ta~~Ad~~l~i 415 (603)
T TIGR01973 357 LADIEEADLVLLVGADLRQEAPLLNLRLRKAVKKGGAKVALIGIEKWNLTYPANTNLVF 415 (603)
T ss_pred HHHHHhCCEEEEEccCchhhhHHHHHHHHHHHhcCCcEEEEECCccccchhhhccceee
Confidence 3456789999999987644 33 233344455555 89999999888877777766543
No 125
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=70.93 E-value=2.4 Score=38.28 Aligned_cols=21 Identities=19% Similarity=0.314 Sum_probs=14.6
Q ss_pred eeeccccceeeeCCCCcccch
Q 016025 216 LELHGTVYTVVCLDCGFSFCR 236 (396)
Q Consensus 216 iElHGsl~~~~C~~C~~~~~~ 236 (396)
++-..+-....|+.|+..|..
T Consensus 101 l~~e~~~~~Y~Cp~c~~r~tf 121 (158)
T TIGR00373 101 LEFETNNMFFICPNMCVRFTF 121 (158)
T ss_pred HhhccCCCeEECCCCCcEeeH
Confidence 444555556789999988754
No 126
>COG1379 PHP family phosphoesterase with a Zn ribbon [General function prediction only]
Probab=70.87 E-value=0.97 Score=45.32 Aligned_cols=19 Identities=16% Similarity=0.270 Sum_probs=14.8
Q ss_pred eccccceeeeCCCCcccch
Q 016025 218 LHGTVYTVVCLDCGFSFCR 236 (396)
Q Consensus 218 lHGsl~~~~C~~C~~~~~~ 236 (396)
--|-++.--|+.|...|..
T Consensus 240 ~LGKY~~TAC~rC~t~y~l 258 (403)
T COG1379 240 RLGKYHLTACSRCYTRYSL 258 (403)
T ss_pred cccchhHHHHHHhhhccCc
Confidence 3477888899999988754
No 127
>cd02772 MopB_NDH-1_NuoG2 MopB_NDH-1_NuoG2: The second domain of the NuoG subunit of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1), found in beta- and gammaproteobacteria. The NDH-1 is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. In Escherichia coli NDH-1, the largest subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the functional enzyme. The NuoG subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Although only vestigial sequence evidence remains of a molybdopterin binding site, this protein domain belongs to t
Probab=70.86 E-value=12 Score=38.25 Aligned_cols=44 Identities=25% Similarity=0.373 Sum_probs=33.3
Q ss_pred HHHhhCCeEEEEccCcc-hhh-HHHHHHHHHHCCCeEEEEcCCCCC
Q 016025 322 EAAKECDAFLVLGSSLM-TMS-AYRLVRAAHEAGSTIAIVNVGETR 365 (396)
Q Consensus 322 ~~~~~aDllLVvGTSl~-V~p-a~~Lv~~a~~~g~~lIiIN~~~t~ 365 (396)
+.++++|++|++|+... ..| ....+..++++|+++|.|++..+.
T Consensus 148 ~di~~ad~il~~G~n~~~~~p~~~~~l~~a~~~g~k~i~idp~~~~ 193 (414)
T cd02772 148 AEISELDRVLVIGSNLRKEHPLLAQRLRQAVKKGAKLSAINPADDD 193 (414)
T ss_pred HHHHhCCEEEEECCCccccchHHHHHHHHHHHcCCEEEEEeCccch
Confidence 46778999999999864 233 344556778889999999987653
No 128
>cd02758 MopB_Tetrathionate-Ra The MopB_Tetrathionate-Ra CD contains tetrathionate reductase, subunit A, (TtrA) and other related proteins. The Salmonella enterica tetrathionate reductase catalyses the reduction of trithionate but not sulfur or thiosulfate. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=70.71 E-value=11 Score=42.12 Aligned_cols=56 Identities=13% Similarity=0.065 Sum_probs=40.3
Q ss_pred HHHhhCCeEEEEccCcch-hh-H---HHHHHHHH-HCCCeEEEEcCCCCCCC---CcccEEEeCc
Q 016025 322 EAAKECDAFLVLGSSLMT-MS-A---YRLVRAAH-EAGSTIAIVNVGETRAD---DLTTLKISAR 377 (396)
Q Consensus 322 ~~~~~aDllLVvGTSl~V-~p-a---~~Lv~~a~-~~g~~lIiIN~~~t~~d---~~a~l~I~~~ 377 (396)
..+++||++|++|++... .| . .+.+..++ ++|+++|.|++..|... ..++++|.-+
T Consensus 207 ~D~~~ad~il~~GsN~a~~~~~~~~~~~~l~~a~~~~G~KlVVVDPr~t~ta~~~~~Ad~wlpIr 271 (735)
T cd02758 207 PDFDNAEFALFIGTSPAQAGNPFKRQARRLAEARTEGNFKYVVVDPVLPNTTSAAGENIRWVPIK 271 (735)
T ss_pred cCHhhCcEEEEeCCCHHHhCCCcchHHHHHHHHHHhCCCEEEEECCCCCccccccccCCEEECCC
Confidence 456799999999998654 23 2 33333444 47899999999988876 7788876543
No 129
>PRK13938 phosphoheptose isomerase; Provisional
Probab=70.62 E-value=11 Score=35.16 Aligned_cols=55 Identities=20% Similarity=0.319 Sum_probs=43.3
Q ss_pred HHHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEc-CCCCCCCCcccEEEeC
Q 016025 322 EAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVN-VGETRADDLTTLKISA 376 (396)
Q Consensus 322 ~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN-~~~t~~d~~a~l~I~~ 376 (396)
..+.+-|++|++-.|..+.-....++.|+++|+++|.|= ....++.+.+|+.|.-
T Consensus 109 ~~~~~~DllI~iS~SG~t~~vi~a~~~Ak~~G~~vI~iT~~~~s~La~~aD~~l~v 164 (196)
T PRK13938 109 GSARPGDTLFAISTSGNSMSVLRAAKTARELGVTVVAMTGESGGQLAEFADFLINV 164 (196)
T ss_pred hcCCCCCEEEEEcCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCChhhhhCCEEEEe
Confidence 345678999999999999888899999999999987764 3456666677776653
No 130
>PRK07591 threonine synthase; Validated
Probab=70.04 E-value=2.5 Score=43.92 Aligned_cols=14 Identities=21% Similarity=0.707 Sum_probs=11.2
Q ss_pred cceeeeCCCCcccc
Q 016025 222 VYTVVCLDCGFSFC 235 (396)
Q Consensus 222 l~~~~C~~C~~~~~ 235 (396)
+..++|..|++.|+
T Consensus 16 ~~~l~C~~Cg~~~~ 29 (421)
T PRK07591 16 AVALKCRECGAEYP 29 (421)
T ss_pred eeEEEeCCCCCcCC
Confidence 44689999998874
No 131
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=69.31 E-value=14 Score=33.32 Aligned_cols=55 Identities=15% Similarity=0.186 Sum_probs=45.3
Q ss_pred HHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEE-cCCCCCCCCcccEEEeCc
Q 016025 323 AAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIV-NVGETRADDLTTLKISAR 377 (396)
Q Consensus 323 ~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiI-N~~~t~~d~~a~l~I~~~ 377 (396)
.+.+-|++|++-.|..+.-.....+.++++|+++|-| |....++...+|+.|.-.
T Consensus 98 ~~~~~Dv~I~iS~SG~t~~~i~~~~~ak~~Ga~vI~IT~~~~s~La~~aD~~l~~~ 153 (177)
T cd05006 98 LGQPGDVLIGISTSGNSPNVLKALEAAKERGMKTIALTGRDGGKLLELADIEIHVP 153 (177)
T ss_pred hCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCCEEEEeC
Confidence 4678899999999999988899999999999998877 666677778888876543
No 132
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=69.06 E-value=4.7 Score=26.94 Aligned_cols=11 Identities=36% Similarity=0.860 Sum_probs=9.0
Q ss_pred eeeeCCCCccc
Q 016025 224 TVVCLDCGFSF 234 (396)
Q Consensus 224 ~~~C~~C~~~~ 234 (396)
.++|..||..+
T Consensus 2 ~~~C~~CG~i~ 12 (34)
T cd00729 2 VWVCPVCGYIH 12 (34)
T ss_pred eEECCCCCCEe
Confidence 47899999875
No 133
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=68.56 E-value=8.3 Score=34.68 Aligned_cols=53 Identities=23% Similarity=0.302 Sum_probs=41.8
Q ss_pred HHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEE-cCCCCCCCCcccEEEe
Q 016025 323 AAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIV-NVGETRADDLTTLKIS 375 (396)
Q Consensus 323 ~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiI-N~~~t~~d~~a~l~I~ 375 (396)
.+.+-|++|++.-|..+.-....++.|+++|+++|.| +...+++...+++.+.
T Consensus 69 ~~~~~Dv~I~iS~sG~t~~~i~~~~~ak~~g~~ii~IT~~~~s~la~~ad~~l~ 122 (179)
T TIGR03127 69 SIKKGDLLIAISGSGETESLVTVAKKAKEIGATVAAITTNPESTLGKLADVVVE 122 (179)
T ss_pred CCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCCchHHhCCEEEE
Confidence 4567899999999999988999999999999998777 4455666666666543
No 134
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=68.52 E-value=9.4 Score=43.04 Aligned_cols=55 Identities=18% Similarity=0.207 Sum_probs=37.8
Q ss_pred HHHHhhCCeEEEEccCcch-hhH--HHHHHHHHHCCCeEEEEcCCCCCC-CCcccEEEe
Q 016025 321 MEAAKECDAFLVLGSSLMT-MSA--YRLVRAAHEAGSTIAIVNVGETRA-DDLTTLKIS 375 (396)
Q Consensus 321 ~~~~~~aDllLVvGTSl~V-~pa--~~Lv~~a~~~g~~lIiIN~~~t~~-d~~a~l~I~ 375 (396)
.+.++++|++|++|+.... .|. .++...++++|+++|.||+..+.. ...++.++.
T Consensus 371 ~~Die~ad~ill~G~N~~~~~P~~~~ri~~a~k~~GakiivIDPr~t~t~a~~Ad~~l~ 429 (797)
T PRK07860 371 YADLEKAPAVLLVGFEPEEESPIVFLRLRKAARKHGLKVYSIAPFATRGLEKMGGTLLR 429 (797)
T ss_pred HHHHHhCCEEEEEeCChhhhhHHHHHHHHHHHHhCCCEEEEECCCCchhhhhhhhceec
Confidence 3567799999999997655 442 334344456899999999987763 344555543
No 135
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=67.79 E-value=11 Score=31.43 Aligned_cols=56 Identities=18% Similarity=0.143 Sum_probs=43.6
Q ss_pred HHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEE-cCCCCCCCCcccEEEeCcH
Q 016025 323 AAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIV-NVGETRADDLTTLKISARL 378 (396)
Q Consensus 323 ~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiI-N~~~t~~d~~a~l~I~~~a 378 (396)
.+.+-|++|++-.|..+.-..+.++.++++|+++|.| |...++....+|+.|.-.+
T Consensus 43 ~~~~~d~~I~iS~sG~t~e~~~~~~~a~~~g~~vi~iT~~~~s~la~~ad~~l~~~~ 99 (126)
T cd05008 43 LLDEDTLVIAISQSGETADTLAALRLAKEKGAKTVAITNVVGSTLAREADYVLYLRA 99 (126)
T ss_pred CCCCCcEEEEEeCCcCCHHHHHHHHHHHHcCCeEEEEECCCCChHHHhCCEEEEecC
Confidence 3678899999999998888889999999999998765 4445666667777765444
No 136
>cd02773 MopB_Res-Cmplx1_Nad11 MopB_Res_Cmplx1_Nad11: The second domain of the Nad11/75-kDa subunit of the NADH-quinone oxidoreductase/respiratory complex I/NADH dehydrogenase-1(NDH-1) of eukaryotes and the Nqo3/G subunit of alphaproteobacteria NDH-1. The NADH-quinone oxidoreductase is the first energy-transducting complex in the respiratory chains of many prokaryotes and eukaryotes. Mitochondrial complex I and its bacterial counterpart, NDH-1, function as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The nad11 gene codes for the largest (75 kDa) subunit of the mitochondrial NADH:ubiquinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. In Paracoccus denitrificans, this subunit is encoded by the nqo3 gene, and is part of the 14 distinct subunits constituting the 'minimal' functional enzyme. The Nad11/Nqo3 subunit is made
Probab=67.77 E-value=16 Score=36.85 Aligned_cols=50 Identities=18% Similarity=0.237 Sum_probs=33.3
Q ss_pred HHHhhCCeEEEEccCcch-hh--HHHHHHHHHHCCCeEEEEcCCCCCCCCccc
Q 016025 322 EAAKECDAFLVLGSSLMT-MS--AYRLVRAAHEAGSTIAIVNVGETRADDLTT 371 (396)
Q Consensus 322 ~~~~~aDllLVvGTSl~V-~p--a~~Lv~~a~~~g~~lIiIN~~~t~~d~~a~ 371 (396)
+.++++|++|++|+.... .| ..++....+++|++++.|++..+.....++
T Consensus 141 ~di~~ad~il~~G~N~~~~~p~~~~~~~~~~~~~g~kli~idp~~~~t~~~~~ 193 (375)
T cd02773 141 AGIEEADAVLLVGTNPRFEAPVLNARIRKAWLHGGLKVGVIGPPVDLTYDYDH 193 (375)
T ss_pred HHHhhCCEEEEEcCCcchhchHHHHHHHHHHHcCCCEEEEEcCccccchhhcc
Confidence 356899999999998743 34 233333334568999999987665433333
No 137
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=67.60 E-value=23 Score=37.11 Aligned_cols=70 Identities=14% Similarity=0.102 Sum_probs=51.0
Q ss_pred HHHHHhhCCeEEEEccCcchhhHHHHHHHHHHC--CCeEEEEcCCCCCCC-------CcccEEEeCcHHHHHHHHHHhC
Q 016025 320 AMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEA--GSTIAIVNVGETRAD-------DLTTLKISARLGEILPRVLDVG 389 (396)
Q Consensus 320 a~~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~--g~~lIiIN~~~t~~d-------~~a~l~I~~~a~evL~~L~~~~ 389 (396)
..+...+.|++.+-.++.+...+.++.+..++. ++++|.-....|... ..+|+++.|..+++|++|++..
T Consensus 62 ~~~~~~~~Dlv~is~~t~~~~~~~~ia~~iK~~~p~~~vv~GG~h~t~~pe~~l~~~~~vD~Vv~GEgE~~l~~l~~g~ 140 (472)
T TIGR03471 62 TLAIAKDYDLVVLHTSTPSFPSDVKTAEALKEQNPATKIGFVGAHVAVLPEKTLKQGPAIDFVCRREFDYTIKEVAEGK 140 (472)
T ss_pred HHHHhcCCCEEEEECCCcchHHHHHHHHHHHHhCCCCEEEEECCCcccCHHHHHhcCCCeeEEEeCchHHHHHHHHcCC
Confidence 344566789888877777777788888877765 566766666555432 2468999999999999998643
No 138
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=67.51 E-value=5 Score=26.49 Aligned_cols=11 Identities=36% Similarity=0.966 Sum_probs=8.9
Q ss_pred eeeCCCCcccc
Q 016025 225 VVCLDCGFSFC 235 (396)
Q Consensus 225 ~~C~~C~~~~~ 235 (396)
.+|..||..|.
T Consensus 2 ~~C~~CGy~y~ 12 (33)
T cd00350 2 YVCPVCGYIYD 12 (33)
T ss_pred EECCCCCCEEC
Confidence 68999998763
No 139
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=67.48 E-value=14 Score=39.37 Aligned_cols=8 Identities=38% Similarity=1.124 Sum_probs=6.6
Q ss_pred CcCCCCCC
Q 016025 292 PTCQKCNG 299 (396)
Q Consensus 292 P~Cp~Cgg 299 (396)
..||+||+
T Consensus 254 ~~Cp~C~s 261 (505)
T TIGR00595 254 KTCPQCGS 261 (505)
T ss_pred CCCCCCCC
Confidence 47999986
No 140
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=67.14 E-value=10 Score=33.73 Aligned_cols=72 Identities=14% Similarity=0.165 Sum_probs=49.9
Q ss_pred HHHHHHHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCCCCCCC-----cccE---EEeCcHHHHHHHHHHhC
Q 016025 318 DKAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD-----LTTL---KISARLGEILPRVLDVG 389 (396)
Q Consensus 318 ~~a~~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~~t~~d~-----~a~l---~I~~~a~evL~~L~~~~ 389 (396)
..+.+.+.+||++++-||++..-...+++..++ +++.++++-+...-.++ -.++ .+-.+.+.++..+.+..
T Consensus 54 ~~~~~~l~~aD~viiTGsTlvN~Ti~~iL~~~~-~~~~vil~GpS~~~~P~~l~~~Gv~~v~g~~v~d~~~~~~~i~~Gg 132 (147)
T PF04016_consen 54 EDAEEILPWADVVIITGSTLVNGTIDDILELAR-NAREVILYGPSAPLHPEALFDYGVTYVGGSRVVDPEKVLRAISEGG 132 (147)
T ss_dssp GGHHHHGGG-SEEEEECHHCCTTTHHHHHHHTT-TSSEEEEESCCGGS-GGGGCCTT-SEEEEEEES-HHHHHHHHCTTS
T ss_pred HHHHHHHccCCEEEEEeeeeecCCHHHHHHhCc-cCCeEEEEecCchhhHHHHHhCCCCEEEEEEEeCHHHHHHHHHcCC
Confidence 355678899999999999999999999998876 57788888876543331 2222 24567888887776554
Q ss_pred C
Q 016025 390 S 390 (396)
Q Consensus 390 ~ 390 (396)
+
T Consensus 133 g 133 (147)
T PF04016_consen 133 G 133 (147)
T ss_dssp H
T ss_pred C
Confidence 3
No 141
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=66.95 E-value=12 Score=31.60 Aligned_cols=57 Identities=16% Similarity=0.114 Sum_probs=45.4
Q ss_pred HHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEE-cCCCCCCCCcccEEEeCcHH
Q 016025 323 AAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIV-NVGETRADDLTTLKISARLG 379 (396)
Q Consensus 323 ~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiI-N~~~t~~d~~a~l~I~~~a~ 379 (396)
.+.+-|++|++-.|..+.-..+.++.++++|+++|.| |....+....+|+.+.-.++
T Consensus 44 ~~~~~dl~I~iS~SG~t~~~~~~~~~a~~~g~~vi~iT~~~~s~la~~ad~~l~~~~~ 101 (120)
T cd05710 44 RLTEKSVVILASHSGNTKETVAAAKFAKEKGATVIGLTDDEDSPLAKLADYVIVYGFE 101 (120)
T ss_pred cCCCCcEEEEEeCCCCChHHHHHHHHHHHcCCeEEEEECCCCCcHHHhCCEEEEccCC
Confidence 4567799999999998888889999999999986655 55566777788888776666
No 142
>TIGR00354 polC DNA polymerase, archaeal type II, large subunit. This model represents the large subunit, DP2, of a two subunit novel Archaeal replicative DNA polymerase first characterized for Pyrococcus furiosus. Structure of DP2 appears to be organized as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit.
Probab=66.43 E-value=3.5 Score=46.70 Aligned_cols=35 Identities=17% Similarity=0.236 Sum_probs=20.5
Q ss_pred CCcCCCCCCcccCcEEEcCCCCCHHHHHHHHHHHhhCC
Q 016025 291 IPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECD 328 (396)
Q Consensus 291 iP~Cp~Cgg~LRP~VVlFGE~lp~~~~~~a~~~~~~aD 328 (396)
.-+|++|||.+-+.|- +.-=...++.+.+.+++-+
T Consensus 1028 ~G~C~kCGg~lilTV~---~GsV~KYl~~s~~la~~Y~ 1062 (1095)
T TIGR00354 1028 VGKCLKCGNNLTLTVS---KGSVMKYLELSKFLAENYN 1062 (1095)
T ss_pred CCcccccCCeEEEEEe---cchhHhhHHHHHHHHHHcC
Confidence 3579999997776663 2222234555555555533
No 143
>cd02751 MopB_DMSOR-like The MopB_DMSOR-like CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR), trimethylamine N-oxide reductase (TMAOR) and other related proteins. DMSOR catalyzes the reduction of DMSO to dimethylsulfide, but its cellular location and oligomerization state are organism-dependent. For example, in Rhodobacter sphaeriodes and Rhodobacter capsulatus, it is an 82-kDa monomeric soluble protein found in the periplasmic space; in E. coli, it is membrane-bound and exists as a heterotrimer. BSOR catalyzes the reduction of biotin sulfixode to biotin, and is unique among Mo enzymes because no additional auxiliary proteins or cofactors are required. TMAOR is similar to DMSOR, but its only natural substrate is TMAO. Also included in this group is the pyrogallol-phloroglucinol transhydroxylase from Pelobacter acidigallici. Members of the MopB_DMSOR-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=66.29 E-value=16 Score=39.71 Aligned_cols=52 Identities=19% Similarity=0.326 Sum_probs=39.3
Q ss_pred hCCeEEEEccCcch-hh---------HHHHHHHHHHCCCeEEEEcCCCCCCCC-cccEEEeCc
Q 016025 326 ECDAFLVLGSSLMT-MS---------AYRLVRAAHEAGSTIAIVNVGETRADD-LTTLKISAR 377 (396)
Q Consensus 326 ~aDllLVvGTSl~V-~p---------a~~Lv~~a~~~g~~lIiIN~~~t~~d~-~a~l~I~~~ 377 (396)
++|++|++|+.... .| ....+..++++|+++|.|++..+.... .+|.+|.-+
T Consensus 169 ~ad~il~wG~N~~~~~~~~~~~~~~~~~~~~~~a~~~GakiivIDPr~s~ta~~~AD~~l~ir 231 (609)
T cd02751 169 HSDLVVLFGANPLKTRQGGGGGPDHGSYYYLKQAKDAGVRFICIDPRYTDTAAVLAAEWIPIR 231 (609)
T ss_pred cCCEEEEECCCHHHhcCCCCCccCcchHHHHHHHHHCCCeEEEECCCCCccccccCCEEECCC
Confidence 59999999987543 22 225566788899999999999888776 678876533
No 144
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=65.92 E-value=22 Score=34.78 Aligned_cols=73 Identities=14% Similarity=0.164 Sum_probs=53.2
Q ss_pred ccCcEEEcCCCCCHHHHHHHHHHHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCC-CCCCCCcccEEEeC
Q 016025 301 LKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVG-ETRADDLTTLKISA 376 (396)
Q Consensus 301 LRP~VVlFGE~lp~~~~~~a~~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~-~t~~d~~a~l~I~~ 376 (396)
+..++....+..- .+ .....+.+-|++|++.-|..+.-....++.|+++|+++|-|--. .++....+|+.+..
T Consensus 155 ig~~~~~~~d~~~--~~-~~~~~~~~~Dv~i~iS~sG~t~e~i~~a~~ak~~ga~vIaiT~~~~spla~~Ad~~L~~ 228 (281)
T COG1737 155 IGLNVVALSDTHG--QL-MQLALLTPGDVVIAISFSGYTREIVEAAELAKERGAKVIAITDSADSPLAKLADIVLLV 228 (281)
T ss_pred cCCceeEecchHH--HH-HHHHhCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCcEEEEcCCCCCchhhhhceEEec
Confidence 3445555544321 12 24456778999999999999988889999999999998888554 67788888877654
No 145
>cd02757 MopB_Arsenate-R This CD includes the respiratory arsenate reductase, As(V), catalytic subunit (ArrA) and other related proteins. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=65.78 E-value=12 Score=39.84 Aligned_cols=55 Identities=5% Similarity=0.085 Sum_probs=40.3
Q ss_pred HHhhCCeEEEEccCcch--hh--HHHHHHHHHHCCCeEEEEcCCCCCCCCcccEEEeCc
Q 016025 323 AAKECDAFLVLGSSLMT--MS--AYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISAR 377 (396)
Q Consensus 323 ~~~~aDllLVvGTSl~V--~p--a~~Lv~~a~~~g~~lIiIN~~~t~~d~~a~l~I~~~ 377 (396)
.+.+||++|++|+.... ++ ...-+..++++|+++|.|++..+.....+|.+|.-.
T Consensus 159 D~~~a~~Il~~G~n~~~t~~~~~~~~~~~~a~~~gakliviDPr~s~ta~~AD~~l~i~ 217 (523)
T cd02757 159 DYANAKYILFFGADPLESNRQNPHAQRIWGGKMDQAKVVVVDPRLSNTAAKADEWLPIK 217 (523)
T ss_pred chhcCcEEEEECCChHHhCCCcHHHHHHHHHHHCCCEEEEECCCCChhhHhcCEeeCCC
Confidence 45799999999977533 22 223344567789999999999988777788876433
No 146
>PF14353 CpXC: CpXC protein
Probab=65.36 E-value=1.8 Score=37.27 Aligned_cols=13 Identities=31% Similarity=0.881 Sum_probs=10.2
Q ss_pred eeeCCCCcccchh
Q 016025 225 VVCLDCGFSFCRD 237 (396)
Q Consensus 225 ~~C~~C~~~~~~~ 237 (396)
+.|+.|++.+..+
T Consensus 2 itCP~C~~~~~~~ 14 (128)
T PF14353_consen 2 ITCPHCGHEFEFE 14 (128)
T ss_pred cCCCCCCCeeEEE
Confidence 6899999877544
No 147
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=65.17 E-value=30 Score=30.56 Aligned_cols=52 Identities=13% Similarity=0.240 Sum_probs=42.1
Q ss_pred HhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEc-CCCCCCCCcccEEEe
Q 016025 324 AKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVN-VGETRADDLTTLKIS 375 (396)
Q Consensus 324 ~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN-~~~t~~d~~a~l~I~ 375 (396)
+.+-|++|++-.|..+.-....++.|+++|+++|.|= ...+++...+|+.|.
T Consensus 77 ~~~~D~~i~iS~sG~t~~~~~~~~~a~~~g~~ii~iT~~~~s~l~~~ad~~l~ 129 (154)
T TIGR00441 77 GQKGDVLLGISTSGNSKNVLKAIEAAKDKGMKTITLAGKDGGKMAGLADIELR 129 (154)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCCEEEE
Confidence 4678999999999999888999999999999987774 345666677777764
No 148
>PRK14990 anaerobic dimethyl sulfoxide reductase subunit A; Provisional
Probab=65.01 E-value=25 Score=39.52 Aligned_cols=57 Identities=11% Similarity=0.105 Sum_probs=40.7
Q ss_pred HHHHhhCCeEEEEccCcchh-h----HHHHHHHHH-HCCCeEEEEcCCCCCCC-CcccEEEeCc
Q 016025 321 MEAAKECDAFLVLGSSLMTM-S----AYRLVRAAH-EAGSTIAIVNVGETRAD-DLTTLKISAR 377 (396)
Q Consensus 321 ~~~~~~aDllLVvGTSl~V~-p----a~~Lv~~a~-~~g~~lIiIN~~~t~~d-~~a~l~I~~~ 377 (396)
...+.++|++|++|+..... + ....+.+++ ++|+++|.|++..+... ..+|.+|.-+
T Consensus 226 ~~D~~~ad~il~~G~N~~~t~~~~~~~~~~~~~a~~~~G~klivIDPr~t~taa~~AD~~l~ir 289 (814)
T PRK14990 226 PSDIENSKLVVLFGNNPGETRMSGGGVTYYLEQARQKSNARMIIIDPRYTDTGAGREDEWIPIR 289 (814)
T ss_pred HHHHhhCCEEEEECCChHHhcCCCCcHHHHHHHHHHHCCCeEEEECCCCCCcccccCCeEECCC
Confidence 34567899999999986542 2 233444455 57999999999988875 4688876544
No 149
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=64.84 E-value=3.8 Score=35.12 Aligned_cols=19 Identities=26% Similarity=0.639 Sum_probs=13.3
Q ss_pred eeeccccceeeeCCCCccc
Q 016025 216 LELHGTVYTVVCLDCGFSF 234 (396)
Q Consensus 216 iElHGsl~~~~C~~C~~~~ 234 (396)
+++.=--...+|..|++.+
T Consensus 63 L~Ie~vp~~~~C~~Cg~~~ 81 (117)
T PRK00564 63 LDIVDEKVELECKDCSHVF 81 (117)
T ss_pred EEEEecCCEEEhhhCCCcc
Confidence 5555555677899999665
No 150
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=64.68 E-value=3 Score=37.00 Aligned_cols=13 Identities=15% Similarity=0.409 Sum_probs=10.2
Q ss_pred eeeeCCCCcccch
Q 016025 224 TVVCLDCGFSFCR 236 (396)
Q Consensus 224 ~~~C~~C~~~~~~ 236 (396)
...|+.|+..|..
T Consensus 99 ~Y~Cp~C~~~y~~ 111 (147)
T smart00531 99 YYKCPNCQSKYTF 111 (147)
T ss_pred EEECcCCCCEeeH
Confidence 5689999988763
No 151
>PRK06450 threonine synthase; Validated
Probab=64.36 E-value=4.3 Score=41.02 Aligned_cols=12 Identities=33% Similarity=0.700 Sum_probs=9.6
Q ss_pred eeeeCCCCcccc
Q 016025 224 TVVCLDCGFSFC 235 (396)
Q Consensus 224 ~~~C~~C~~~~~ 235 (396)
.++|..|++.|.
T Consensus 3 ~~~C~~Cg~~~~ 14 (338)
T PRK06450 3 KEVCMKCGKERE 14 (338)
T ss_pred eeEECCcCCcCC
Confidence 378999998874
No 152
>COG1439 Predicted nucleic acid-binding protein, consists of a PIN domain and a Zn-ribbon module [General function prediction only]
Probab=64.14 E-value=4.4 Score=37.36 Aligned_cols=12 Identities=25% Similarity=0.517 Sum_probs=9.5
Q ss_pred eeeeCCCCcccc
Q 016025 224 TVVCLDCGFSFC 235 (396)
Q Consensus 224 ~~~C~~C~~~~~ 235 (396)
..+|..|.+.|+
T Consensus 139 ~~rC~GC~~~f~ 150 (177)
T COG1439 139 RLRCHGCKRIFP 150 (177)
T ss_pred eEEEecCceecC
Confidence 358999998874
No 153
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=63.18 E-value=24 Score=29.28 Aligned_cols=56 Identities=13% Similarity=0.138 Sum_probs=42.4
Q ss_pred HHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEc-CCCCCCCCcccEEEeCcH
Q 016025 323 AAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVN-VGETRADDLTTLKISARL 378 (396)
Q Consensus 323 ~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN-~~~t~~d~~a~l~I~~~a 378 (396)
.+.+-|++|++-.+..+....++++.++++|++++.|= ...++....++..|.-..
T Consensus 57 ~~~~~~~~i~iS~~g~~~~~~~~~~~a~~~g~~iv~iT~~~~~~l~~~~d~~i~~~~ 113 (139)
T cd05013 57 NLTPGDVVIAISFSGETKETVEAAEIAKERGAKVIAITDSANSPLAKLADIVLLVSS 113 (139)
T ss_pred cCCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEcCCCCChhHHhcCEEEEcCC
Confidence 45677899999988888888889999999999986664 445666667777765433
No 154
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=63.13 E-value=25 Score=32.43 Aligned_cols=54 Identities=17% Similarity=0.244 Sum_probs=42.6
Q ss_pred HhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEc-CCCCCCCCcccEEEeCc
Q 016025 324 AKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVN-VGETRADDLTTLKISAR 377 (396)
Q Consensus 324 ~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN-~~~t~~d~~a~l~I~~~ 377 (396)
..+-|++|++-.|..+.-....++.++++|+++|.|= ....++...+|+.|.-.
T Consensus 109 ~~~~Dv~I~iS~SG~t~~~i~~~~~ak~~g~~iI~iT~~~~s~l~~~ad~~l~~~ 163 (192)
T PRK00414 109 GREGDVLLGISTSGNSGNIIKAIEAARAKGMKVITLTGKDGGKMAGLADIEIRVP 163 (192)
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCChhHHhCCEEEEeC
Confidence 4678999999999999888999999999999987774 44566666777776533
No 155
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=62.54 E-value=8.1 Score=45.21 Aligned_cols=34 Identities=26% Similarity=0.410 Sum_probs=20.8
Q ss_pred CcCCCCCCcccCcEEEcCCCCCHHHHHHHHHHHhhCC
Q 016025 292 PTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECD 328 (396)
Q Consensus 292 P~Cp~Cgg~LRP~VVlFGE~lp~~~~~~a~~~~~~aD 328 (396)
-+|++|||.+-+.|- +.-=...++.+.+.+++-+
T Consensus 1270 G~C~kCGg~iilTv~---~Gsv~KYl~~a~~~~~~y~ 1303 (1337)
T PRK14714 1270 GKCRKCGGRIILTVH---EGSVEKYLDTAKMVATEYN 1303 (1337)
T ss_pred CcccccCCeEEEEEe---cchHHHHHHHHHHHHHHcC
Confidence 479999998777663 3322334555665555543
No 156
>PRK04940 hypothetical protein; Provisional
Probab=62.18 E-value=18 Score=33.46 Aligned_cols=61 Identities=21% Similarity=0.219 Sum_probs=40.0
Q ss_pred cCcEEEc--CCCCCHHHHHHHHHHHhh----C--CeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCCCC
Q 016025 302 KPDVVFF--GDNVPKDRADKAMEAAKE----C--DAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETR 365 (396)
Q Consensus 302 RP~VVlF--GE~lp~~~~~~a~~~~~~----a--DllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~~t~ 365 (396)
.|++.+. ....|.+.+....+.+.+ . +=+++|||||--+-|..|. .+.|.+-|+||+.-.+
T Consensus 26 ~p~~~~~~l~~~~P~~a~~~l~~~i~~~~~~~~~~~~~liGSSLGGyyA~~La---~~~g~~aVLiNPAv~P 94 (180)
T PRK04940 26 DPDVRLISYSTLHPKHDMQHLLKEVDKMLQLSDDERPLICGVGLGGYWAERIG---FLCGIRQVIFNPNLFP 94 (180)
T ss_pred CCCCeEEECCCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEeChHHHHHHHHH---HHHCCCEEEECCCCCh
Confidence 5777653 334456655554444432 1 3478899999887777764 3458999999987554
No 157
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=61.82 E-value=34 Score=38.38 Aligned_cols=15 Identities=20% Similarity=0.629 Sum_probs=10.5
Q ss_pred cCCCCCCcccCcEEEcCC
Q 016025 293 TCQKCNGVLKPDVVFFGD 310 (396)
Q Consensus 293 ~Cp~Cgg~LRP~VVlFGE 310 (396)
.||+||+. +++.+|-
T Consensus 477 ~Cp~Cgs~---~L~~~G~ 491 (730)
T COG1198 477 SCPECGSE---HLRAVGP 491 (730)
T ss_pred CCCCCCCC---eeEEecc
Confidence 69999987 4455544
No 158
>TIGR02166 dmsA_ynfE anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family. Members of this family include known and probable dimethyl sulfoxide reductase (DMSO reductase) A chains. In E. coli, dmsA encodes the canonical anaerobic DMSO reductase A chain. The paralog ynfE, as part of ynfFGH expressed from a multicopy plasmid, could complement a dmsABC deletion, suggesting a similar function and some overlap in specificity, although YnfE could not substitute for DmsA in a mixed complex.
Probab=61.81 E-value=15 Score=41.04 Aligned_cols=56 Identities=11% Similarity=0.192 Sum_probs=40.3
Q ss_pred HHHhhCCeEEEEccCcch-hh----H-HHHHHHHHHCCCeEEEEcCCCCCCC-CcccEEEeCc
Q 016025 322 EAAKECDAFLVLGSSLMT-MS----A-YRLVRAAHEAGSTIAIVNVGETRAD-DLTTLKISAR 377 (396)
Q Consensus 322 ~~~~~aDllLVvGTSl~V-~p----a-~~Lv~~a~~~g~~lIiIN~~~t~~d-~~a~l~I~~~ 377 (396)
..+.++|++|++|+.... .+ . ..+.+.++++|+++|.|++..+... ..+|.+|.-+
T Consensus 210 ~D~~~a~~il~~G~N~~~s~~~~~~~~~~~~~~~~~~G~kiivvDPr~t~taa~~Ad~~l~ir 272 (797)
T TIGR02166 210 DDIENSKLVVMFGNNPAETRMSGGGQTYYFLQALEKSNARVIVIDPRYTDTVAGREDEWIPIR 272 (797)
T ss_pred HHHHhCCEEEEECCCHHHhcCCCcchHHHHHHHHHHCCCeEEEECCCCCccchhcCCEEECCC
Confidence 456789999999998654 22 2 3444445578999999999988764 4677776543
No 159
>PRK04023 DNA polymerase II large subunit; Validated
Probab=61.53 E-value=4.9 Score=45.89 Aligned_cols=35 Identities=23% Similarity=0.314 Sum_probs=21.4
Q ss_pred CCcCCCCCCcccCcEEEcCCCCCHHHHHHHHHHHhhCC
Q 016025 291 IPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECD 328 (396)
Q Consensus 291 iP~Cp~Cgg~LRP~VVlFGE~lp~~~~~~a~~~~~~aD 328 (396)
.-+|++|||.+-+.|- +.-=...++.+...+++-+
T Consensus 1053 ~G~C~kCGg~lilTVh---~GsV~KYl~~s~~la~~Y~ 1087 (1121)
T PRK04023 1053 SGKCPKCGGNLILTVH---KGSVEKYLEVSKKLAEEYG 1087 (1121)
T ss_pred CCcCccCCCeEEEEEe---cchHHHHHHHHHHHHHHcC
Confidence 3479999998877764 3322334555555555543
No 160
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=61.28 E-value=23 Score=35.08 Aligned_cols=21 Identities=19% Similarity=0.203 Sum_probs=14.6
Q ss_pred hhHHHHHHHHHHCCCeEEEEc
Q 016025 340 MSAYRLVRAAHEAGSTIAIVN 360 (396)
Q Consensus 340 ~pa~~Lv~~a~~~g~~lIiIN 360 (396)
.-+.++.+.|.+.+.|+|.+-
T Consensus 142 eKi~r~~e~A~~~~lPlV~l~ 162 (285)
T TIGR00515 142 EKFVRAIEKALEDNCPLIIFS 162 (285)
T ss_pred HHHHHHHHHHHHcCCCEEEEE
Confidence 445666777777888877764
No 161
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=61.21 E-value=31 Score=34.39 Aligned_cols=23 Identities=22% Similarity=0.218 Sum_probs=15.9
Q ss_pred hhHHHHHHHHHHCCCeEEEEcCC
Q 016025 340 MSAYRLVRAAHEAGSTIAIVNVG 362 (396)
Q Consensus 340 ~pa~~Lv~~a~~~g~~lIiIN~~ 362 (396)
.-..++.+.|.+.+.|+|++.-.
T Consensus 155 eKi~ra~e~A~~~rlPlV~l~~S 177 (296)
T CHL00174 155 EKITRLIEYATNESLPLIIVCAS 177 (296)
T ss_pred HHHHHHHHHHHHcCCCEEEEECC
Confidence 34556667777888888877654
No 162
>PRK09129 NADH dehydrogenase subunit G; Validated
Probab=61.06 E-value=23 Score=39.72 Aligned_cols=46 Identities=24% Similarity=0.319 Sum_probs=34.6
Q ss_pred HHHHhhCCeEEEEccCcch-hh-HHHHHHHHHHCCCeEEEEcCCCCCC
Q 016025 321 MEAAKECDAFLVLGSSLMT-MS-AYRLVRAAHEAGSTIAIVNVGETRA 366 (396)
Q Consensus 321 ~~~~~~aDllLVvGTSl~V-~p-a~~Lv~~a~~~g~~lIiIN~~~t~~ 366 (396)
.+.+.++|++|++|+.... .| ....+..++++|+++|.|++..+..
T Consensus 365 ~~Di~~ad~Il~~G~N~~~~~p~~~~~i~~a~~~G~klividpr~t~~ 412 (776)
T PRK09129 365 IAELSNLDAVLVVGSNLRKEHPLLAARLRQAAKNGAKLSAINPVDDDF 412 (776)
T ss_pred HHHHHhCCEEEEEecCcchhcHHHHHHHHHHHHCCCeEEEecCCcccc
Confidence 4567789999999997543 44 3445566788899999999877653
No 163
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=60.93 E-value=26 Score=37.17 Aligned_cols=63 Identities=13% Similarity=0.076 Sum_probs=45.5
Q ss_pred hCCeEEEEccCcchhhHHHHHHHHHHC--CCeEEEEcCCCCCCC-------CcccEEEeCcHHHHHHHHHHh
Q 016025 326 ECDAFLVLGSSLMTMSAYRLVRAAHEA--GSTIAIVNVGETRAD-------DLTTLKISARLGEILPRVLDV 388 (396)
Q Consensus 326 ~aDllLVvGTSl~V~pa~~Lv~~a~~~--g~~lIiIN~~~t~~d-------~~a~l~I~~~a~evL~~L~~~ 388 (396)
+.|++.+-.++.+.+.+.++++.+++. ++++|.=....|... ..+|+++.|..++++++|++.
T Consensus 63 ~pdvVgis~~t~~~~~a~~~~~~~k~~~P~~~iV~GG~h~t~~~~~~l~~~p~vD~Vv~GEGE~~~~~Ll~~ 134 (497)
T TIGR02026 63 CPDLVLITAITPAIYIACETLKFARERLPNAIIVLGGIHPTFMFHQVLTEAPWIDFIVRGEGEETVVKLIAA 134 (497)
T ss_pred CcCEEEEecCcccHHHHHHHHHHHHHHCCCCEEEEcCCCcCcCHHHHHhcCCCccEEEeCCcHHHHHHHHHH
Confidence 688887765555566677777777765 666666666555432 247899999999999999874
No 164
>COG3357 Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon [Transcription]
Probab=60.78 E-value=4 Score=33.59 Aligned_cols=12 Identities=42% Similarity=1.060 Sum_probs=9.1
Q ss_pred eeeeCCCCcccc
Q 016025 224 TVVCLDCGFSFC 235 (396)
Q Consensus 224 ~~~C~~C~~~~~ 235 (396)
-.+|-+||..+.
T Consensus 58 Pa~CkkCGfef~ 69 (97)
T COG3357 58 PARCKKCGFEFR 69 (97)
T ss_pred ChhhcccCcccc
Confidence 358999998764
No 165
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=59.85 E-value=23 Score=30.68 Aligned_cols=36 Identities=17% Similarity=0.241 Sum_probs=28.1
Q ss_pred HhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEE
Q 016025 324 AKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIV 359 (396)
Q Consensus 324 ~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiI 359 (396)
++.-|++|++-+|...+..-....+|+++|.++|-|
T Consensus 101 ~~~gDvli~iS~SG~s~~vi~a~~~Ak~~G~~vIal 136 (138)
T PF13580_consen 101 IRPGDVLIVISNSGNSPNVIEAAEEAKERGMKVIAL 136 (138)
T ss_dssp --TT-EEEEEESSS-SHHHHHHHHHHHHTT-EEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEE
Confidence 678899999999999988899999999999998754
No 166
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=58.93 E-value=6.5 Score=33.36 Aligned_cols=13 Identities=31% Similarity=0.833 Sum_probs=10.7
Q ss_pred CcCCCCCCcccCc
Q 016025 292 PTCQKCNGVLKPD 304 (396)
Q Consensus 292 P~Cp~Cgg~LRP~ 304 (396)
..||+||....|.
T Consensus 27 ivCP~CG~~~~~~ 39 (108)
T PF09538_consen 27 IVCPKCGTEFPPE 39 (108)
T ss_pred ccCCCCCCccCcc
Confidence 3599999987777
No 167
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=57.44 E-value=67 Score=33.10 Aligned_cols=90 Identities=20% Similarity=0.280 Sum_probs=47.8
Q ss_pred CcCCCCCCccc-CcEEEcCCCCCHHHHHHHHHHHh-------------------hCCe-EEEE-----c--cCcchhhHH
Q 016025 292 PTCQKCNGVLK-PDVVFFGDNVPKDRADKAMEAAK-------------------ECDA-FLVL-----G--SSLMTMSAY 343 (396)
Q Consensus 292 P~Cp~Cgg~LR-P~VVlFGE~lp~~~~~~a~~~~~-------------------~aDl-lLVv-----G--TSl~V~pa~ 343 (396)
.+||.||+.++ -+-+|-|.-.+.+..++..+..+ +.+. .+.. + .+++++|..
T Consensus 258 ~~c~~Cg~~~~~~GPlW~GpL~d~~f~e~~l~~~~~~~l~~~~~~~klL~~i~~E~~~~p~fydl~~ias~l~~s~p~~~ 337 (380)
T COG1867 258 EKCPHCGGKVHLAGPLWLGPLHDEEFIEEMLEIAEGLELGTKKRALKLLKLIKKELDISPLFYDLHRIASKLGLSAPPLE 337 (380)
T ss_pred ccCCcccccceeccCcccCcccCHHHHHHHHHHhhccccccHHHHHHHHHHHHhhcCCCceEEEHHHHHHHhCCCCCCHH
Confidence 47999997432 23356676666665544433221 2232 1111 2 233346777
Q ss_pred HHHHHHHHCCCeEEEEcCCCCCCCCcccEEEeCcHHHHHHHHHH
Q 016025 344 RLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVLD 387 (396)
Q Consensus 344 ~Lv~~a~~~g~~lIiIN~~~t~~d~~a~l~I~~~a~evL~~L~~ 387 (396)
.++..-+..|-...+-.-.++. ++-++..++|...|.+
T Consensus 338 ~vv~~L~~~G~~asrTHf~p~g------iKTda~~~ev~~vl~~ 375 (380)
T COG1867 338 EVVEALRSAGYEASRTHFSPTG------IKTDAPYEEVEKVLKS 375 (380)
T ss_pred HHHHHHHhcCceeeeeccCCcc------cccCCCHHHHHHHHHH
Confidence 7776666556555444444442 4556667777665544
No 168
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=56.74 E-value=5.6 Score=24.28 Aligned_cols=8 Identities=25% Similarity=0.787 Sum_probs=4.3
Q ss_pred cCCCCCCc
Q 016025 293 TCQKCNGV 300 (396)
Q Consensus 293 ~Cp~Cgg~ 300 (396)
.|+.||..
T Consensus 15 fC~~CG~~ 22 (23)
T PF13240_consen 15 FCPNCGTP 22 (23)
T ss_pred chhhhCCc
Confidence 36666543
No 169
>COG0549 ArcC Carbamate kinase [Amino acid transport and metabolism]
Probab=56.70 E-value=11 Score=37.58 Aligned_cols=81 Identities=22% Similarity=0.370 Sum_probs=53.7
Q ss_pred CCCCCCCCc------chHHHHhcCCcEEEEECCcccccCCCCCcCCCCcCccCCCCCCChHHHhhchhhHHHHHHHHHhh
Q 016025 98 KKAVPDADP------PSIEDINQFAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVRSSRARRRYWARSYAG 171 (396)
Q Consensus 98 ~~~~~~~~~------~~~~~i~~ak~IVvlTGAGISaaSGIPdFRs~~Gl~~~~~~p~~~~~f~~~~~~~~~~w~~~~~~ 171 (396)
|++||+-.| +++++|-++.++||.+|.| |||..+..+| |. +-...-..+
T Consensus 160 RRVVpSP~P~~IvE~~~Ik~L~~~g~vVI~~GGG-----GIPVv~~~~~-~~-GVeAVIDKD------------------ 214 (312)
T COG0549 160 RRVVPSPKPVRIVEAEAIKALLESGHVVIAAGGG-----GIPVVEEGAG-LQ-GVEAVIDKD------------------ 214 (312)
T ss_pred eEecCCCCCccchhHHHHHHHHhCCCEEEEeCCC-----CcceEecCCC-cc-eeeEEEccH------------------
Confidence 366776555 4467788899999999999 9999999887 54 222110000
Q ss_pred hhhcccCCCCHHHHHHHHHHHhCCCceeeecCccchHhhhCCCc
Q 016025 172 WRRFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNP 215 (396)
Q Consensus 172 ~~~~~~a~Pn~~H~aLa~Le~~g~l~~VITQNIDgLh~kAG~~~ 215 (396)
.+-..||++.+ -..+||.+.||+-+..-|-++
T Consensus 215 ----------lasalLA~~i~--AD~liILTdVd~Vy~n~gkp~ 246 (312)
T COG0549 215 ----------LASALLAEQID--ADLLIILTDVDAVYVNFGKPN 246 (312)
T ss_pred ----------HHHHHHHHHhc--CCEEEEEeccchheecCCCcc
Confidence 11234555554 345799999999877666544
No 170
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=56.60 E-value=8.8 Score=27.25 Aligned_cols=10 Identities=30% Similarity=0.793 Sum_probs=7.9
Q ss_pred eeeCCCCccc
Q 016025 225 VVCLDCGFSF 234 (396)
Q Consensus 225 ~~C~~C~~~~ 234 (396)
..|.+|+..+
T Consensus 3 Y~C~~Cg~~~ 12 (44)
T smart00659 3 YICGECGREN 12 (44)
T ss_pred EECCCCCCEe
Confidence 5799999764
No 171
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=56.58 E-value=8 Score=32.96 Aligned_cols=20 Identities=20% Similarity=0.260 Sum_probs=12.8
Q ss_pred eeeccccceeeeCCCCcccc
Q 016025 216 LELHGTVYTVVCLDCGFSFC 235 (396)
Q Consensus 216 iElHGsl~~~~C~~C~~~~~ 235 (396)
++++=-=...+|..|++.++
T Consensus 62 L~i~~~p~~~~C~~Cg~~~~ 81 (114)
T PRK03681 62 LHLEEQEAECWCETCQQYVT 81 (114)
T ss_pred EEEEeeCcEEEcccCCCeee
Confidence 44444445678999997653
No 172
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=56.37 E-value=44 Score=33.07 Aligned_cols=13 Identities=31% Similarity=0.161 Sum_probs=7.1
Q ss_pred CCCeEEEEcCCCC
Q 016025 352 AGSTIAIVNVGET 364 (396)
Q Consensus 352 ~g~~lIiIN~~~t 364 (396)
.|-++|.|=.+||
T Consensus 194 a~lpyIsVLt~PT 206 (294)
T COG0777 194 AGLPYISVLTDPT 206 (294)
T ss_pred cCCceEEEecCCC
Confidence 4556655555554
No 173
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=56.17 E-value=8.1 Score=33.75 Aligned_cols=14 Identities=7% Similarity=0.116 Sum_probs=10.6
Q ss_pred CCcCCCCCCcccCc
Q 016025 291 IPTCQKCNGVLKPD 304 (396)
Q Consensus 291 iP~Cp~Cgg~LRP~ 304 (396)
...||+||....|.
T Consensus 26 p~vcP~cg~~~~~~ 39 (129)
T TIGR02300 26 PAVSPYTGEQFPPE 39 (129)
T ss_pred CccCCCcCCccCcc
Confidence 45799999876655
No 174
>PRK15482 transcriptional regulator MurR; Provisional
Probab=56.15 E-value=28 Score=33.82 Aligned_cols=57 Identities=16% Similarity=0.182 Sum_probs=45.5
Q ss_pred HHHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcC-CCCCCCCcccEEEeCcH
Q 016025 322 EAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNV-GETRADDLTTLKISARL 378 (396)
Q Consensus 322 ~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~-~~t~~d~~a~l~I~~~a 378 (396)
..+.+-|++|++.-|..+.-....++.|+++|+++|.|-- ..+++...+|+.|.-..
T Consensus 178 ~~~~~~Dv~i~iS~sg~t~~~~~~~~~a~~~g~~iI~IT~~~~s~la~~ad~~l~~~~ 235 (285)
T PRK15482 178 QALKKGDVQIAISYSGSKKEIVLCAEAARKQGATVIAITSLADSPLRRLAHFTLDTVS 235 (285)
T ss_pred hcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCchHHhCCEEEEcCC
Confidence 3567789999999999999999999999999999887754 44666677777765443
No 175
>TIGR01580 narG respiratory nitrate reductase, alpha subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the alpha subunit for nitrate reductase I (narG) and nitrate reductase II (narZ) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model The seed members used to make the model include Nitrate reductases from Pseudomonas fluorescens, E.coli and B.subtilis. All seed members are experimentally characterized. Some unpublished nitrate reductases, that are shorter sequences, and probably fragments fall in between the noise and trusted cutoffs. P
Probab=56.10 E-value=20 Score=42.23 Aligned_cols=54 Identities=9% Similarity=0.130 Sum_probs=43.5
Q ss_pred HhhCCeEEEEccCcch--hhHHHHHHHHHHCCCeEEEEcCCCCCCCCcccEEEeCc
Q 016025 324 AKECDAFLVLGSSLMT--MSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISAR 377 (396)
Q Consensus 324 ~~~aDllLVvGTSl~V--~pa~~Lv~~a~~~g~~lIiIN~~~t~~d~~a~l~I~~~ 377 (396)
+.+++++|+.|+.... .|..+.+.+++++|+++|.|.+.-+.....+|.+|.-+
T Consensus 243 ~~nS~~II~WGsN~~~T~~p~a~~l~eAr~rGaKvVVVDPr~t~tA~~AD~WLpIr 298 (1235)
T TIGR01580 243 WYNSSYIIAWGSNVPQTRTPDAHFFTEVRYKGTKTVAITPDYAEIAKLCDLWLAPK 298 (1235)
T ss_pred hhcCCEEEEECCChhhhcchhHHHHHHHHHcCCeEEEEcCCCChhhHhhCEEeCCC
Confidence 4589999999998644 45667777889999999999999888877888776433
No 176
>cd02774 MopB_Res-Cmplx1_Nad11-M MopB_Res_Cmplx1_Nad11_M: Mitochondrial-encoded NADH-quinone oxidoreductase/respiratory complex I, the second domain of the Nad11/75-kDa subunit of some protists. NADH-quinone oxidoreductase is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The nad11 gene codes for the largest (75-kDa) subunit of the mitochondrial NADH-quinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. The Nad11 subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Although only vestigial sequence evi
Probab=55.77 E-value=25 Score=35.95 Aligned_cols=44 Identities=16% Similarity=0.212 Sum_probs=31.1
Q ss_pred HHHHHhhCCeEEEEccCcch-hhH-HHHHHHHH-HCCCeEEEEcCCC
Q 016025 320 AMEAAKECDAFLVLGSSLMT-MSA-YRLVRAAH-EAGSTIAIVNVGE 363 (396)
Q Consensus 320 a~~~~~~aDllLVvGTSl~V-~pa-~~Lv~~a~-~~g~~lIiIN~~~ 363 (396)
..+.++++|++|+||+.+.. .|. ..-++.+. +.|++++.|++..
T Consensus 142 sl~die~ad~illiG~n~~~e~Pvl~~rlrka~~~~~~ki~vi~~~~ 188 (366)
T cd02774 142 SLKNLDKSDLCLLIGSNLRVESPILNIRLRNRYNKGNKKIFVIGNKF 188 (366)
T ss_pred CHHHHhhCCEEEEEcCCcchhhHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 35567899999999998776 443 22333443 4578999998766
No 177
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=55.11 E-value=32 Score=34.24 Aligned_cols=20 Identities=25% Similarity=0.263 Sum_probs=11.6
Q ss_pred hHHHHHHHHHHCCCeEEEEc
Q 016025 341 SAYRLVRAAHEAGSTIAIVN 360 (396)
Q Consensus 341 pa~~Lv~~a~~~g~~lIiIN 360 (396)
-+.++.+.|.+.+.|+|.+.
T Consensus 144 Ki~r~~e~A~~~~lPlV~l~ 163 (292)
T PRK05654 144 KIVRAVERAIEEKCPLVIFS 163 (292)
T ss_pred HHHHHHHHHHHcCCCEEEEE
Confidence 34455555666666666655
No 178
>TIGR01706 NAPA periplasmic nitrate reductase, large subunit. The enzymes from Alicagenes eutrophus and Paracoccus pantotrophus have been characterized. In E. coli (as well as other organisms) this gene is part of a large nitrate reduction operon (napFDAGHBC).
Probab=55.07 E-value=21 Score=40.35 Aligned_cols=55 Identities=18% Similarity=0.305 Sum_probs=38.8
Q ss_pred HHHhhCCeEEEEccCcch-hhH--HHHHHHHH--HCCCeEEEEcCCCCCCCCcccEEEeCc
Q 016025 322 EAAKECDAFLVLGSSLMT-MSA--YRLVRAAH--EAGSTIAIVNVGETRADDLTTLKISAR 377 (396)
Q Consensus 322 ~~~~~aDllLVvGTSl~V-~pa--~~Lv~~a~--~~g~~lIiIN~~~t~~d~~a~l~I~~~ 377 (396)
+.+.++|++|++|+.... .|. .++. .++ ++|+++|.|++..+.....+|.+|.=+
T Consensus 202 ~Di~~ad~il~~G~Np~~~~p~~~~~i~-~a~~~~~GakliviDPr~t~ta~~Ad~~l~ir 261 (830)
T TIGR01706 202 DDFEAADAFVLWGSNMAEMHPILWTRVT-DRRLSHPKVKVVVLSTFTHRSFDLADIGIIFK 261 (830)
T ss_pred hHHhhCCEEEEEcCCcchhCCHHHHHHH-HHHhccCCCEEEEECCCCCchhHHhCeeeccC
Confidence 456799999999997654 332 2333 333 469999999998887777777765433
No 179
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=54.24 E-value=11 Score=27.55 Aligned_cols=11 Identities=27% Similarity=0.781 Sum_probs=9.5
Q ss_pred eeeCCCCcccc
Q 016025 225 VVCLDCGFSFC 235 (396)
Q Consensus 225 ~~C~~C~~~~~ 235 (396)
.+|..|+..|+
T Consensus 2 y~C~~CgyiYd 12 (50)
T cd00730 2 YECRICGYIYD 12 (50)
T ss_pred cCCCCCCeEEC
Confidence 58999999886
No 180
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=54.23 E-value=28 Score=34.59 Aligned_cols=45 Identities=27% Similarity=0.367 Sum_probs=33.9
Q ss_pred HHHHHHHHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCC
Q 016025 317 ADKAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVG 362 (396)
Q Consensus 317 ~~~a~~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~ 362 (396)
.+...+...+||++||||+.-+. --.+|.+.|.+.|.+-+.|+..
T Consensus 203 Q~Avk~la~~~Dl~iVVG~~nSS-Ns~rL~eiA~~~g~~aylId~~ 247 (294)
T COG0761 203 QDAVKELAPEVDLVIVVGSKNSS-NSNRLAEIAKRHGKPAYLIDDA 247 (294)
T ss_pred HHHHHHHhhcCCEEEEECCCCCc-cHHHHHHHHHHhCCCeEEeCCh
Confidence 34455677799999999974332 2368988899999988888854
No 181
>PRK13532 nitrate reductase catalytic subunit; Provisional
Probab=54.20 E-value=25 Score=39.71 Aligned_cols=56 Identities=20% Similarity=0.283 Sum_probs=38.9
Q ss_pred HHHhhCCeEEEEccCcch-hhH--HHHHHHH-HHCCCeEEEEcCCCCCCCCcccEEEeCc
Q 016025 322 EAAKECDAFLVLGSSLMT-MSA--YRLVRAA-HEAGSTIAIVNVGETRADDLTTLKISAR 377 (396)
Q Consensus 322 ~~~~~aDllLVvGTSl~V-~pa--~~Lv~~a-~~~g~~lIiIN~~~t~~d~~a~l~I~~~ 377 (396)
+.+.++|++|++|+.... .|. .++.... +++|+++|.|++..+.....+|.+|.-+
T Consensus 202 ~Di~~a~~il~~G~Np~~~~p~~~~~i~~a~~~~~G~kiiviDPr~t~ta~~ad~~l~ir 261 (830)
T PRK13532 202 DDIEAADAFVLWGSNMAEMHPILWSRVTDRRLSNPDVKVAVLSTFEHRSFELADNGIIFT 261 (830)
T ss_pred HHHHhCCEEEEECCCchhcCcHHHHHHHHHHhcCCCCeEEEECCCCCchhHhcCeeeccC
Confidence 356899999999997543 332 3333222 2479999999998887777777776433
No 182
>PRK14715 DNA polymerase II large subunit; Provisional
Probab=53.95 E-value=14 Score=43.57 Aligned_cols=34 Identities=21% Similarity=0.261 Sum_probs=21.0
Q ss_pred CcCCCCCCcccCcEEEcCCCCCHHHHHHHHHHHhhCC
Q 016025 292 PTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECD 328 (396)
Q Consensus 292 P~Cp~Cgg~LRP~VVlFGE~lp~~~~~~a~~~~~~aD 328 (396)
.+||+|||.+-..|- +.--+..++-|...+++-+
T Consensus 1558 G~C~kCGg~~ilTV~---kGsv~KYl~~a~~~~~~y~ 1591 (1627)
T PRK14715 1558 GKCPKCGSKLILTVS---KGAVEKYMPVAKMMAEKYN 1591 (1627)
T ss_pred CcCcccCCeEEEEEe---cchHHHHHHHHHHHHHHcC
Confidence 479999998776663 3323334556666555544
No 183
>cd02761 MopB_FmdB-FwdB The MopB_FmdB-FwdB CD contains the molybdenum/tungsten formylmethanofuran dehydrogenases, subunit B (FmdB/FwdB), and other related proteins. Formylmethanofuran dehydrogenase catalyzes the first step in methane formation from CO2 in methanogenic archaea and some eubacteria. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=53.03 E-value=18 Score=36.76 Aligned_cols=53 Identities=13% Similarity=0.232 Sum_probs=36.2
Q ss_pred hhCCeEEEEccCcch-hhHH--HHHHHH-------HHCCCeEEEEcCCCCCCCCcccEEEeCc
Q 016025 325 KECDAFLVLGSSLMT-MSAY--RLVRAA-------HEAGSTIAIVNVGETRADDLTTLKISAR 377 (396)
Q Consensus 325 ~~aDllLVvGTSl~V-~pa~--~Lv~~a-------~~~g~~lIiIN~~~t~~d~~a~l~I~~~ 377 (396)
+++|++|++|+.... .|.. ++...+ .++|+++|.|++..+.....+|.+|.-+
T Consensus 130 ~~ad~il~~G~n~~~~~p~~~~~~~~~~~~~~~~~~~~g~kli~idp~~t~ta~~Ad~~l~i~ 192 (415)
T cd02761 130 NRADVIVYWGTNPMHAHPRHMSRYSVFPRGFFREGGREDRTLIVVDPRKSDTAKLADIHLQID 192 (415)
T ss_pred hcCCEEEEEcCCccccccHHhhhhhhhhhhhccccCCCCCEEEEEcCCCcchhhhcceEEecC
Confidence 479999999987654 4432 211111 1468899999999888777777766533
No 184
>COG2331 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.78 E-value=5.9 Score=31.53 Aligned_cols=19 Identities=37% Similarity=0.817 Sum_probs=13.4
Q ss_pred CcCCCCCCcc-----cCcEEEcCC
Q 016025 292 PTCQKCNGVL-----KPDVVFFGD 310 (396)
Q Consensus 292 P~Cp~Cgg~L-----RP~VVlFGE 310 (396)
-.||.||+.| ++.|+|-|-
T Consensus 34 t~ce~c~a~~kk~l~~vgi~fKGS 57 (82)
T COG2331 34 TTCEECGARLKKLLNAVGIVFKGS 57 (82)
T ss_pred ccChhhChHHHHhhccceEEEecc
Confidence 4699999865 567776554
No 185
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=52.56 E-value=9.3 Score=32.52 Aligned_cols=20 Identities=20% Similarity=0.263 Sum_probs=13.8
Q ss_pred eeeccccceeeeCCCCcccc
Q 016025 216 LELHGTVYTVVCLDCGFSFC 235 (396)
Q Consensus 216 iElHGsl~~~~C~~C~~~~~ 235 (396)
++++=--...+|..|++.+.
T Consensus 62 L~I~~vp~~~~C~~Cg~~~~ 81 (113)
T PRK12380 62 LHIVYKPAQAWCWDCSQVVE 81 (113)
T ss_pred EEEEeeCcEEEcccCCCEEe
Confidence 55555555679999997653
No 186
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=52.43 E-value=26 Score=31.51 Aligned_cols=55 Identities=16% Similarity=0.213 Sum_probs=42.4
Q ss_pred HHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEc-CCCCCCCCcccEEEeCc
Q 016025 323 AAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVN-VGETRADDLTTLKISAR 377 (396)
Q Consensus 323 ~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN-~~~t~~d~~a~l~I~~~ 377 (396)
.+.+-|++|++..|..+.-...+++.|+++|+++|.|- ...+++...+++.+.-.
T Consensus 72 ~~~~~D~vI~iS~sG~t~~~i~~~~~ak~~g~~iI~IT~~~~s~la~~ad~~l~~~ 127 (179)
T cd05005 72 AIGPGDLLIAISGSGETSSVVNAAEKAKKAGAKVVLITSNPDSPLAKLADVVVVIP 127 (179)
T ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHCCCeEEEEECCCCCchHHhCCEEEEeC
Confidence 45678999999999999888899999999999987664 44556666667665433
No 187
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=52.10 E-value=29 Score=42.54 Aligned_cols=63 Identities=14% Similarity=0.232 Sum_probs=43.8
Q ss_pred HHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCCCCCCC--cccEEEeCcHHHHHHHHHH
Q 016025 323 AAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLD 387 (396)
Q Consensus 323 ~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~~t~~d~--~a~l~I~~~a~evL~~L~~ 387 (396)
.+.++|++|+||+.+............. ...+|.|+.++...+. ..++.|.+|+.++|..|++
T Consensus 595 ~~~~aDlVl~iG~rl~s~~~t~~~~~~~--~~~~I~ID~d~~~i~~~~~~~~~i~~D~~~~l~~L~~ 659 (1655)
T PLN02980 595 NWIQFDVVIQIGSRITSKRVSQMLEKCF--PFSYILVDKHPCRHDPSHLVTHRVQSNIVQFADCLLK 659 (1655)
T ss_pred ccCCCCEEEEeCCccccHHHHHHHHhCC--CCeEEEECCCCCccCCcccceEEEEeCHHHHHHHhhh
Confidence 3568999999999986322222222111 2358999998877654 4567899999999988765
No 188
>COG1545 Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]
Probab=50.56 E-value=11 Score=33.40 Aligned_cols=16 Identities=25% Similarity=0.729 Sum_probs=13.2
Q ss_pred ccccceeeeCCCCccc
Q 016025 219 HGTVYTVVCLDCGFSF 234 (396)
Q Consensus 219 HGsl~~~~C~~C~~~~ 234 (396)
.|.+.-.+|.+||+.|
T Consensus 24 ~~kl~g~kC~~CG~v~ 39 (140)
T COG1545 24 EGKLLGTKCKKCGRVY 39 (140)
T ss_pred hCcEEEEEcCCCCeEE
Confidence 3777788999999876
No 189
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=50.34 E-value=41 Score=32.35 Aligned_cols=57 Identities=11% Similarity=0.032 Sum_probs=44.7
Q ss_pred HHHHHHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcC-CCCCCCCcccEEEe
Q 016025 319 KAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNV-GETRADDLTTLKIS 375 (396)
Q Consensus 319 ~a~~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~-~~t~~d~~a~l~I~ 375 (396)
.+...+.+-|++|++.-|..+.-....++.|+++|+++|.|=- ..++....+|+.+.
T Consensus 168 ~~~~~~~~~Dv~I~iS~sg~~~~~~~~~~~ak~~ga~iI~IT~~~~s~la~~ad~~l~ 225 (278)
T PRK11557 168 ATVQALSPDDLLLAISYSGERRELNLAADEALRVGAKVLAITGFTPNALQQRASHCLY 225 (278)
T ss_pred HHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHHcCCCEEEEcCCCCCchHHhCCEEEE
Confidence 3445677899999998888888888889999999999877754 45666667777765
No 190
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=50.28 E-value=8.5 Score=32.66 Aligned_cols=21 Identities=33% Similarity=0.623 Sum_probs=13.4
Q ss_pred eeeccccceeeeCCCCcccch
Q 016025 216 LELHGTVYTVVCLDCGFSFCR 236 (396)
Q Consensus 216 iElHGsl~~~~C~~C~~~~~~ 236 (396)
++++=-=...+|..|++.|..
T Consensus 62 L~Ie~~p~~~~C~~Cg~~~~~ 82 (113)
T PF01155_consen 62 LEIEEVPARARCRDCGHEFEP 82 (113)
T ss_dssp EEEEEE--EEEETTTS-EEEC
T ss_pred EEEEecCCcEECCCCCCEEec
Confidence 555555567899999998753
No 191
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=50.02 E-value=11 Score=33.07 Aligned_cols=21 Identities=14% Similarity=0.411 Sum_probs=13.8
Q ss_pred eeeccccceeeeCCCCcccch
Q 016025 216 LELHGTVYTVVCLDCGFSFCR 236 (396)
Q Consensus 216 iElHGsl~~~~C~~C~~~~~~ 236 (396)
+++.=-=...+|..|++.+..
T Consensus 62 L~i~~~p~~~~C~~CG~~~~~ 82 (135)
T PRK03824 62 IIFEEEEAVLKCRNCGNEWSL 82 (135)
T ss_pred EEEEecceEEECCCCCCEEec
Confidence 333333356899999987754
No 192
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional
Probab=49.93 E-value=56 Score=31.41 Aligned_cols=55 Identities=18% Similarity=0.235 Sum_probs=44.4
Q ss_pred HHHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCCCCCCCcccEEEeC
Q 016025 322 EAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISA 376 (396)
Q Consensus 322 ~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~~t~~d~~a~l~I~~ 376 (396)
..+.+-|++|++..|..+.-....++.|+++|+++|.|=....++...+|+.+.-
T Consensus 171 ~~~~~~D~vI~iS~sG~t~~~~~~~~~ak~~g~~vI~IT~~~s~l~~~ad~~l~~ 225 (284)
T PRK11302 171 MNSSDGDVVVLISHTGRTKSLVELAQLARENGATVIAITSAGSPLAREATLALTL 225 (284)
T ss_pred HhCCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEECCCCChhHHhCCEEEec
Confidence 3457889999999999888888999999999999988875556666677777653
No 193
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=49.92 E-value=46 Score=37.81 Aligned_cols=47 Identities=19% Similarity=0.126 Sum_probs=34.3
Q ss_pred HHHHHhhCCeEEEEccCcch-hh-HHHHHHHH-HHCCCeEEEEcCCCCCC
Q 016025 320 AMEAAKECDAFLVLGSSLMT-MS-AYRLVRAA-HEAGSTIAIVNVGETRA 366 (396)
Q Consensus 320 a~~~~~~aDllLVvGTSl~V-~p-a~~Lv~~a-~~~g~~lIiIN~~~t~~ 366 (396)
..+.+.++|++|++|+.+.. .| +...+..| +++|+++|.|++-.+..
T Consensus 364 sl~DI~~AD~IlviGsN~~e~hPvl~~~I~~A~k~~gaklIvidPr~~~~ 413 (819)
T PRK08493 364 NLEDIKTSDFVVVAGSALKTDNPLLRYAINNALKMNKASGLYFHPIKDNV 413 (819)
T ss_pred CHHHHhhCCEEEEECCChhhhCHHHHHHHHHHHHhCCCeEEEEecCCchh
Confidence 35567899999999997654 56 34445555 45899999999877654
No 194
>cd02764 MopB_PHLH The MopB_PHLH CD includes a group of related uncharacterized putative hydrogenase-like homologs (PHLH) of molybdopterin binding (MopB) proteins. This CD is of the PHLH region homologous to the catalytic molybdopterin-binding subunit of MopB homologs.
Probab=49.90 E-value=31 Score=36.67 Aligned_cols=55 Identities=9% Similarity=0.140 Sum_probs=39.2
Q ss_pred HHhhCCeEEEEccCcchh---h--HHHHHHHHHHCC-----CeEEEEcCCCCCCCCcccEEEeCc
Q 016025 323 AAKECDAFLVLGSSLMTM---S--AYRLVRAAHEAG-----STIAIVNVGETRADDLTTLKISAR 377 (396)
Q Consensus 323 ~~~~aDllLVvGTSl~V~---p--a~~Lv~~a~~~g-----~~lIiIN~~~t~~d~~a~l~I~~~ 377 (396)
.++++|++|++|+..... | ..+....++++| .++|.|++..+.....+|.+|.-+
T Consensus 193 D~~~a~~il~~G~N~~~~~~~~~~~~~~~~~ar~~g~~~~g~kliviDPr~s~ta~~Ad~~l~ir 257 (524)
T cd02764 193 DFDKAEVIVSIDADFLGSWISAIRHRHDFAAKRRLGAEEPMSRLVAAESVYTLTGANADVRLAIR 257 (524)
T ss_pred ChhHCcEEEEECCcccccCcccchhHHHHHHhccccCCCCceeEEEEecCCCchhhhhcceeccC
Confidence 567999999999987542 2 233333455544 399999999998888888776543
No 195
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=49.49 E-value=46 Score=32.92 Aligned_cols=47 Identities=30% Similarity=0.416 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCC
Q 016025 315 DRADKAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVG 362 (396)
Q Consensus 315 ~~~~~a~~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~ 362 (396)
.+.+.+.+..+++|++||||..-+ .-..+|.+.+++.|.+.+.|..-
T Consensus 198 ~RQ~a~~~La~~vD~miVIGg~~S-sNT~kL~eia~~~~~~t~~Ie~~ 244 (281)
T PF02401_consen 198 NRQEAARELAKEVDAMIVIGGKNS-SNTRKLAEIAKEHGKPTYHIETA 244 (281)
T ss_dssp HHHHHHHHHHCCSSEEEEES-TT--HHHHHHHHHHHHCTTCEEEESSG
T ss_pred HHHHHHHHHHhhCCEEEEecCCCC-ccHHHHHHHHHHhCCCEEEeCCc
Confidence 355666777789999999997554 34568888888888888888743
No 196
>PRK14873 primosome assembly protein PriA; Provisional
Probab=49.42 E-value=14 Score=40.80 Aligned_cols=44 Identities=18% Similarity=0.165 Sum_probs=21.5
Q ss_pred CHHHHHHHHHHHhCCCceeeecCccchHhhhCCCc-eeeccccceeeeCCCCc
Q 016025 181 NPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNP-LELHGTVYTVVCLDCGF 232 (396)
Q Consensus 181 n~~H~aLa~Le~~g~l~~VITQNIDgLh~kAG~~~-iElHGsl~~~~C~~C~~ 232 (396)
.....+|.+-.++| .-++=-|= -|+.. +.++--=...+|.+|+-
T Consensus 356 ~~l~~~i~~~L~~g--qvll~lnR------rGyap~l~C~~Cg~~~~C~~C~~ 400 (665)
T PRK14873 356 SLAFRAARDALEHG--PVLVQVPR------RGYVPSLACARCRTPARCRHCTG 400 (665)
T ss_pred HHHHHHHHHHHhcC--cEEEEecC------CCCCCeeEhhhCcCeeECCCCCC
Confidence 34455555444455 33443343 34444 55555555555555553
No 197
>PRK09444 pntB pyridine nucleotide transhydrogenase; Provisional
Probab=48.96 E-value=21 Score=37.65 Aligned_cols=85 Identities=14% Similarity=0.163 Sum_probs=54.0
Q ss_pred cCcEEEcCCCCCHHHH---HHHHHHHhhCCeEEEEccCcchhhHHHHH-H---------HHHHCCC-eEEEEcCCCCC--
Q 016025 302 KPDVVFFGDNVPKDRA---DKAMEAAKECDAFLVLGSSLMTMSAYRLV-R---------AAHEAGS-TIAIVNVGETR-- 365 (396)
Q Consensus 302 RP~VVlFGE~lp~~~~---~~a~~~~~~aDllLVvGTSl~V~pa~~Lv-~---------~a~~~g~-~lIiIN~~~t~-- 365 (396)
.-||++=.-.+|.+.. ++.-+...+.|+.||+|..=.|-|+++-- . ++. .+ .+|.++.+-..
T Consensus 354 HMNVLLAEA~VPYd~v~eMdeIN~~F~~tDvalVIGANDvVNPaA~~dp~SpIyGMPvL~v~--kAk~Viv~KRs~~~Gy 431 (462)
T PRK09444 354 HMNVLLAEAKVPYDIVLEMDEINDDFADTDTVLVIGANDTVNPAAQEDPNSPIAGMPVLEVW--KAQNVIVFKRSMNTGY 431 (462)
T ss_pred cceeEEeecCCCHHHHHhHHhhccccccCCEEEEecCccCCCcccccCCCCCcCCCceeehh--hCCEEEEEeCCCCCCc
Confidence 3578887777887743 44445677999999999999998877531 1 111 22 34444443211
Q ss_pred --CC-----CcccEEEeCcHHHHHHHHHHh
Q 016025 366 --AD-----DLTTLKISARLGEILPRVLDV 388 (396)
Q Consensus 366 --~d-----~~a~l~I~~~a~evL~~L~~~ 388 (396)
.+ .....-+-+|+.+.+.+|++.
T Consensus 432 AGv~NpLF~~~nt~MlfGDAK~~~~~l~~~ 461 (462)
T PRK09444 432 AGVQNPLFFKENTQMLFGDAKASVDAILKA 461 (462)
T ss_pred CCCCCcceecCCceEEeccHHHHHHHHHHh
Confidence 11 123345889999999998765
No 198
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=48.78 E-value=11 Score=40.22 Aligned_cols=79 Identities=13% Similarity=0.161 Sum_probs=47.6
Q ss_pred EcCCCCCHH--------HHHHHHHHHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCCCCCCCcccEEEeCcH
Q 016025 307 FFGDNVPKD--------RADKAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARL 378 (396)
Q Consensus 307 lFGE~lp~~--------~~~~a~~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~~t~~d~~a~l~I~~~a 378 (396)
+|+|..|.. ......+.++.||++|.+|+-|+-+....+-..-. -+++|.++.......+..--. -..
T Consensus 249 ~idEs~P~y~GvY~G~~s~~~vre~vE~aD~il~iG~~ltD~~Tg~Ft~~~~--~~~~i~~~~~~v~I~~~~f~~--l~m 324 (557)
T COG3961 249 VIDESHPNYLGVYNGKLSEPEVREAVESADLILTIGVLLTDFNTGGFTYQYK--PANIIEIHPDSVKIKDAVFTN--LSM 324 (557)
T ss_pred cccccCCCeeeEEecccCCHHHHHHhhcCCEEEEeceEEeeccccceeeecC--cccEEEeccCeeEecccccCC--eeH
Confidence 577877763 12456788999999999998887544333322212 356788887664432211111 236
Q ss_pred HHHHHHHHHhC
Q 016025 379 GEILPRVLDVG 389 (396)
Q Consensus 379 ~evL~~L~~~~ 389 (396)
.++|++|++++
T Consensus 325 ~~~L~~L~~~i 335 (557)
T COG3961 325 KDALQELAKKI 335 (557)
T ss_pred HHHHHHHHHHh
Confidence 77888886543
No 199
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=48.15 E-value=12 Score=31.90 Aligned_cols=20 Identities=20% Similarity=0.418 Sum_probs=13.1
Q ss_pred eeeccccceeeeCCCCcccc
Q 016025 216 LELHGTVYTVVCLDCGFSFC 235 (396)
Q Consensus 216 iElHGsl~~~~C~~C~~~~~ 235 (396)
++++=--...+|..|++.+.
T Consensus 62 L~I~~~p~~~~C~~Cg~~~~ 81 (115)
T TIGR00100 62 LNIEDEPVECECEDCSEEVS 81 (115)
T ss_pred EEEEeeCcEEEcccCCCEEe
Confidence 44444445678999997654
No 200
>PF02591 DUF164: Putative zinc ribbon domain; InterPro: IPR003743 This entry describes proteins of unknown function.
Probab=47.89 E-value=14 Score=27.09 Aligned_cols=19 Identities=16% Similarity=0.429 Sum_probs=12.9
Q ss_pred eeeccccceeeeCCCCcccchhh
Q 016025 216 LELHGTVYTVVCLDCGFSFCRDL 238 (396)
Q Consensus 216 iElHGsl~~~~C~~C~~~~~~~~ 238 (396)
..++|. .|..|+-..+...
T Consensus 18 a~v~~~----~C~gC~~~l~~~~ 36 (56)
T PF02591_consen 18 ARVEGG----TCSGCHMELPPQE 36 (56)
T ss_pred EEeeCC----ccCCCCEEcCHHH
Confidence 555554 8999997765443
No 201
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=47.81 E-value=11 Score=36.38 Aligned_cols=19 Identities=26% Similarity=0.576 Sum_probs=13.2
Q ss_pred eeeccccceeeeCCCCcccchhh
Q 016025 216 LELHGTVYTVVCLDCGFSFCRDL 238 (396)
Q Consensus 216 iElHGsl~~~~C~~C~~~~~~~~ 238 (396)
+.+.|. +|..|+-..+...
T Consensus 193 vpl~g~----~C~GC~m~l~~~~ 211 (239)
T COG1579 193 VPLEGR----VCGGCHMKLPSQT 211 (239)
T ss_pred EeecCC----cccCCeeeecHHH
Confidence 666655 6999997766544
No 202
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=47.68 E-value=11 Score=27.55 Aligned_cols=11 Identities=27% Similarity=0.676 Sum_probs=8.8
Q ss_pred eeeeCCCCccc
Q 016025 224 TVVCLDCGFSF 234 (396)
Q Consensus 224 ~~~C~~C~~~~ 234 (396)
...|..|++.+
T Consensus 6 ~Y~C~~Cg~~~ 16 (49)
T COG1996 6 EYKCARCGREV 16 (49)
T ss_pred EEEhhhcCCee
Confidence 45899999876
No 203
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=47.64 E-value=40 Score=27.74 Aligned_cols=82 Identities=22% Similarity=0.192 Sum_probs=48.2
Q ss_pred cEEEcCCCCCHHHHHHHHHHHhhCCeEEEEc-cCcchhhHHHHHHHHHHC--CCeEEEEcCCCCCCC-------CcccEE
Q 016025 304 DVVFFGDNVPKDRADKAMEAAKECDAFLVLG-SSLMTMSAYRLVRAAHEA--GSTIAIVNVGETRAD-------DLTTLK 373 (396)
Q Consensus 304 ~VVlFGE~lp~~~~~~a~~~~~~aDllLVvG-TSl~V~pa~~Lv~~a~~~--g~~lIiIN~~~t~~d-------~~a~l~ 373 (396)
+|.++|-..+.+.+.+.... .+.|++.+=. ++-....+.++.+..++. +.+++.=....+..+ ..+|..
T Consensus 30 ~v~~~d~~~~~~~l~~~~~~-~~pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv~GG~~~t~~~~~~l~~~~~~D~v 108 (121)
T PF02310_consen 30 EVDILDANVPPEELVEALRA-ERPDVVGISVSMTPNLPEAKRLARAIKERNPNIPIVVGGPHATADPEEILREYPGIDYV 108 (121)
T ss_dssp EEEEEESSB-HHHHHHHHHH-TTCSEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEEEEESSSGHHHHHHHHHHHTSEEE
T ss_pred eEEEECCCCCHHHHHHHHhc-CCCcEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEEEECCchhcChHHHhccCcCccee
Confidence 56666666655444332222 2778765544 444556677777776665 456666666554321 345888
Q ss_pred EeCcHHHHHHHHH
Q 016025 374 ISARLGEILPRVL 386 (396)
Q Consensus 374 I~~~a~evL~~L~ 386 (396)
+.+..++.+++|+
T Consensus 109 v~GegE~~~~~l~ 121 (121)
T PF02310_consen 109 VRGEGEEAFPELL 121 (121)
T ss_dssp EEETTSSHHHH--
T ss_pred cCCChHHhhcccC
Confidence 8999988888774
No 204
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=47.63 E-value=16 Score=26.32 Aligned_cols=13 Identities=23% Similarity=0.692 Sum_probs=10.7
Q ss_pred eeeeCCCCcccch
Q 016025 224 TVVCLDCGFSFCR 236 (396)
Q Consensus 224 ~~~C~~C~~~~~~ 236 (396)
+.+|..|+..|+-
T Consensus 1 ky~C~~CgyvYd~ 13 (47)
T PF00301_consen 1 KYQCPVCGYVYDP 13 (47)
T ss_dssp EEEETTTSBEEET
T ss_pred CcCCCCCCEEEcC
Confidence 4689999998864
No 205
>PRK08166 NADH dehydrogenase subunit G; Validated
Probab=47.16 E-value=21 Score=40.44 Aligned_cols=41 Identities=24% Similarity=0.225 Sum_probs=30.5
Q ss_pred HHHhhCCeEEEEccCcch-hh-HHHHHHHHHHCCCeEEEEcCC
Q 016025 322 EAAKECDAFLVLGSSLMT-MS-AYRLVRAAHEAGSTIAIVNVG 362 (396)
Q Consensus 322 ~~~~~aDllLVvGTSl~V-~p-a~~Lv~~a~~~g~~lIiIN~~ 362 (396)
+.++++|++|++|+.+.. .| ....+..|.++|+++|.|++.
T Consensus 367 ~di~~ad~Ilv~G~N~~~~~p~~~~~i~~a~~~gaklividpr 409 (847)
T PRK08166 367 REIESYDAVLVLGEDLTQTAARVALAVRQAVKGKAREMAAAQK 409 (847)
T ss_pred HHHHhCCEEEEEeCChHHhhHHHHHHHHHHHHcCCceEeeccc
Confidence 456789999999998754 44 445566777889988877764
No 206
>PRK00945 acetyl-CoA decarbonylase/synthase complex subunit epsilon; Provisional
Probab=47.09 E-value=51 Score=30.26 Aligned_cols=24 Identities=8% Similarity=0.098 Sum_probs=19.9
Q ss_pred CCcchHHHHhcCCcEEEEECCccc
Q 016025 104 ADPPSIEDINQFAKLIVLTGAGIS 127 (396)
Q Consensus 104 ~~~~~~~~i~~ak~IVvlTGAGIS 127 (396)
.+..+.+.|++|++.|++.|.|+.
T Consensus 23 ~p~~aa~lI~~AKrPlIivG~ga~ 46 (171)
T PRK00945 23 SPKIAAMMIKKAKRPLLVVGSLLL 46 (171)
T ss_pred CHHHHHHHHHhCCCcEEEECcCcc
Confidence 455678889999999999999875
No 207
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=47.06 E-value=56 Score=31.72 Aligned_cols=55 Identities=22% Similarity=0.202 Sum_probs=42.2
Q ss_pred HHHHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEc-CCCCCCCCcccEEEe
Q 016025 321 MEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVN-VGETRADDLTTLKIS 375 (396)
Q Consensus 321 ~~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN-~~~t~~d~~a~l~I~ 375 (396)
...+.+-|++|++--|..+.-+..+++.|+++|+++|.|= ...+++...+|+.|.
T Consensus 182 ~~~~~~~Dl~I~iS~sG~t~~~~~~~~~ak~~g~~ii~IT~~~~s~la~~ad~~l~ 237 (292)
T PRK11337 182 AALLQEGDVVLVVSHSGRTSDVIEAVELAKKNGAKIICITNSYHSPIAKLADYVIC 237 (292)
T ss_pred HhcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCChhHHhCCEEEE
Confidence 3456788999999888888888889999999999987774 344566666676654
No 208
>COG2051 RPS27A Ribosomal protein S27E [Translation, ribosomal structure and biogenesis]
Probab=46.58 E-value=10 Score=29.37 Aligned_cols=17 Identities=35% Similarity=0.644 Sum_probs=15.2
Q ss_pred eeccccceeeeCCCCcc
Q 016025 217 ELHGTVYTVVCLDCGFS 233 (396)
Q Consensus 217 ElHGsl~~~~C~~C~~~ 233 (396)
+.+|.+-+++|.+|+..
T Consensus 12 ~p~s~Fl~VkCpdC~N~ 28 (67)
T COG2051 12 EPRSRFLRVKCPDCGNE 28 (67)
T ss_pred CCCceEEEEECCCCCCE
Confidence 78899999999999965
No 209
>PRK08197 threonine synthase; Validated
Probab=46.38 E-value=12 Score=38.47 Aligned_cols=14 Identities=21% Similarity=0.586 Sum_probs=11.0
Q ss_pred ceeeeCCCCcccch
Q 016025 223 YTVVCLDCGFSFCR 236 (396)
Q Consensus 223 ~~~~C~~C~~~~~~ 236 (396)
..++|..|++.|+.
T Consensus 6 ~~~~C~~Cg~~~~~ 19 (394)
T PRK08197 6 SHLECSKCGETYDA 19 (394)
T ss_pred eEEEECCCCCCCCC
Confidence 35899999998753
No 210
>PRK02947 hypothetical protein; Provisional
Probab=45.87 E-value=44 Score=32.08 Aligned_cols=53 Identities=15% Similarity=0.220 Sum_probs=42.4
Q ss_pred HHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCC------------CCCCCcccEEEe
Q 016025 323 AAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGE------------TRADDLTTLKIS 375 (396)
Q Consensus 323 ~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~~------------t~~d~~a~l~I~ 375 (396)
.+.+.|++|++-.|..+.-...+++.++++|+++|.|=-.+ .++.+.+|++|.
T Consensus 103 ~~~~~Dv~i~iS~sG~t~~~i~~~~~a~~~g~~vI~iT~~~~s~~~~~~h~~gs~l~~~ad~~l~ 167 (246)
T PRK02947 103 DIRPGDVLIVVSNSGRNPVPIEMALEAKERGAKVIAVTSLAYSASVASRHSSGKRLAEVADVVLD 167 (246)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEcCCcccccccccCCCcCchhHhCCEEEE
Confidence 45688999999999999888999999999999988885443 455566777764
No 211
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=45.51 E-value=22 Score=29.48 Aligned_cols=56 Identities=20% Similarity=0.269 Sum_probs=42.3
Q ss_pred HHHHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEc-CCCCCCCCcccEEEeC
Q 016025 321 MEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVN-VGETRADDLTTLKISA 376 (396)
Q Consensus 321 ~~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN-~~~t~~d~~a~l~I~~ 376 (396)
...+.+-|++|++-.|.......+.++.++++|+++|.|= ....+....+|+.|.-
T Consensus 48 ~~~~~~~d~vi~is~sg~~~~~~~~~~~ak~~g~~vi~iT~~~~~~l~~~ad~~l~~ 104 (131)
T PF01380_consen 48 LENLDPDDLVIIISYSGETRELIELLRFAKERGAPVILITSNSESPLARLADIVLYI 104 (131)
T ss_dssp GGGCSTTEEEEEEESSSTTHHHHHHHHHHHHTTSEEEEEESSTTSHHHHHSSEEEEE
T ss_pred cccccccceeEeeeccccchhhhhhhHHHHhcCCeEEEEeCCCCCchhhhCCEEEEe
Confidence 3445677899999999999888999999999999987775 4455555666666543
No 212
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=45.42 E-value=42 Score=25.65 Aligned_cols=39 Identities=18% Similarity=0.178 Sum_probs=32.0
Q ss_pred HHHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEc
Q 016025 322 EAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVN 360 (396)
Q Consensus 322 ~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN 360 (396)
..+.+-|+++++-.|..+.-...+++.++++|+++|.|=
T Consensus 43 ~~~~~~d~~i~iS~sg~t~~~~~~~~~a~~~g~~ii~it 81 (87)
T cd04795 43 SLLRKGDVVIALSYSGRTEELLAALEIAKELGIPVIAIT 81 (87)
T ss_pred hcCCCCCEEEEEECCCCCHHHHHHHHHHHHcCCeEEEEe
Confidence 456788999999888877778888899999999987663
No 213
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=45.29 E-value=65 Score=35.81 Aligned_cols=45 Identities=22% Similarity=0.309 Sum_probs=31.6
Q ss_pred HHHHhhCCeEEEEccCcch-hh-HHHHHHHHHHCC-CeEEEEcCCCCC
Q 016025 321 MEAAKECDAFLVLGSSLMT-MS-AYRLVRAAHEAG-STIAIVNVGETR 365 (396)
Q Consensus 321 ~~~~~~aDllLVvGTSl~V-~p-a~~Lv~~a~~~g-~~lIiIN~~~t~ 365 (396)
.+.++++|++|++|+.... .| ...-++.+.++| .+++.|++..+.
T Consensus 359 i~dIe~AD~IlliG~Np~~eaPvl~~rirka~~~g~~kIivIdpr~~~ 406 (687)
T PRK09130 359 IAGIEEADAILLIGANPRFEAPVLNARIRKRWRAGGFKIAVIGEQADL 406 (687)
T ss_pred HHHHHhCCEEEEEccCcccccHHHHHHHHHHHHcCCCeEEEEcCcccc
Confidence 4567899999999998644 44 333345566667 499999987543
No 214
>PF13289 SIR2_2: SIR2-like domain
Probab=43.92 E-value=1.1e+02 Score=25.73 Aligned_cols=62 Identities=18% Similarity=0.146 Sum_probs=37.7
Q ss_pred HHHHHHHHhhCCeEEEEccCcchhhHHHHHHHHHHCCC----eEEEEcCCCCCCCCcccEEEeCcHHHHHHHHHHhCCCC
Q 016025 317 ADKAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGS----TIAIVNVGETRADDLTTLKISARLGEILPRVLDVGSLS 392 (396)
Q Consensus 317 ~~~a~~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~----~lIiIN~~~t~~d~~a~l~I~~~a~evL~~L~~~~~l~ 392 (396)
+......+-.+..+|+||-|+.=..+..+...+.+... +.++|...+. .+....+++..|++
T Consensus 76 ~~~~l~~~l~~~~~lfiGys~~D~~i~~~l~~~~~~~~~~~~~~~~v~~~~~--------------~~~~~~~~~~~~i~ 141 (143)
T PF13289_consen 76 FPNFLRSLLRSKTLLFIGYSFNDPDIRQLLRSALENSGKSRPRHYIVIPDPD--------------DENEREFLEKYGIE 141 (143)
T ss_pred HHHHHHHHHcCCCEEEEEECCCCHHHHHHHHHHHHhccCCCccEEEEEcCCc--------------hHHHHHHHHHcCCE
Confidence 34444444467788899999987777788777654433 2444443322 35556666666654
No 215
>COG0243 BisC Anaerobic dehydrogenases, typically selenocysteine-containing [Energy production and conversion]
Probab=43.17 E-value=23 Score=39.57 Aligned_cols=51 Identities=20% Similarity=0.358 Sum_probs=37.5
Q ss_pred HhhCCeEEEEccCcch-hhHHH----HHHHHHHCCCeEEEEcCCCCCCCCcccEEE
Q 016025 324 AKECDAFLVLGSSLMT-MSAYR----LVRAAHEAGSTIAIVNVGETRADDLTTLKI 374 (396)
Q Consensus 324 ~~~aDllLVvGTSl~V-~pa~~----Lv~~a~~~g~~lIiIN~~~t~~d~~a~l~I 374 (396)
++.+|++|++|+.... .|... ....+++.|+++|.|++..+.....+|.+|
T Consensus 197 ~~~a~~iv~~G~N~~~~~~~~~~~~~~~~~~~~~~~kviviDP~~t~Ta~~ad~~l 252 (765)
T COG0243 197 IENADLIVLWGSNPAEAHPVLGRGLLLAKAAKRSGAKVIVIDPRRTETAALADLWL 252 (765)
T ss_pred HhcCCEEEEECCChHHhCcchhhHHHHHHHhccCCCEEEEECCCCChhHHhhCCcc
Confidence 7899999999997776 44322 333445677899999999887766666553
No 216
>PF12172 DUF35_N: Rubredoxin-like zinc ribbon domain (DUF35_N); InterPro: IPR022002 This domain has no known function and is found in conserved hypothetical archaeal and bacterial proteins. The domain is duplicated in O53566 from SWISSPROT. The structure of a DUF35 representative reveals two long N-terminal helices followed by a rubredoxin-like zinc ribbon domain represented in this family and a C-terminal OB fold domain. Zinc is chelated by the four conserved cysteines in the alignment. ; PDB: 3IRB_A.
Probab=42.82 E-value=13 Score=24.94 Aligned_cols=16 Identities=31% Similarity=0.611 Sum_probs=8.5
Q ss_pred ccccceeeeCCCCccc
Q 016025 219 HGTVYTVVCLDCGFSF 234 (396)
Q Consensus 219 HGsl~~~~C~~C~~~~ 234 (396)
.|.+..-+|.+|+..+
T Consensus 6 ~~~l~~~rC~~Cg~~~ 21 (37)
T PF12172_consen 6 EGRLLGQRCRDCGRVQ 21 (37)
T ss_dssp TT-EEEEE-TTT--EE
T ss_pred CCEEEEEEcCCCCCEe
Confidence 3566677899999753
No 217
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase. This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.
Probab=42.52 E-value=47 Score=32.92 Aligned_cols=53 Identities=13% Similarity=0.118 Sum_probs=41.8
Q ss_pred HhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEc-CCCCCCCCcccEEEeC
Q 016025 324 AKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVN-VGETRADDLTTLKISA 376 (396)
Q Consensus 324 ~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN-~~~t~~d~~a~l~I~~ 376 (396)
+.+-|++|++-.|..+.-+...+..++++|+++|.|- ....+....+|+.|.-
T Consensus 124 l~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~tIaIT~~~~s~La~~aD~~I~~ 177 (291)
T TIGR00274 124 LTKNDVVVGIAASGRTPYVIAGLQYARSLGALTISIACNPKSAASEIADIAIET 177 (291)
T ss_pred CCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCChhHHhCCEEEec
Confidence 4578999999999999989999999999999887774 3445555666776653
No 218
>TIGR00375 conserved hypothetical protein TIGR00375. The member of this family from Methanococcus jannaschii, MJ0043, is considerably longer and appears to contain an intein N-terminal to the region of homology.
Probab=41.63 E-value=12 Score=38.62 Aligned_cols=26 Identities=12% Similarity=0.120 Sum_probs=16.3
Q ss_pred eeeecccchHHhhhhcccccceeecCCCce
Q 016025 37 VKSEIVQSSIKAQQLLSKGRRVFPHQGSVK 66 (396)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (396)
.++|--+| .|....++. +.+-.+.++
T Consensus 36 g~~D~~~p---~~~~~~~~~-~~~~~~Gl~ 61 (374)
T TIGR00375 36 GIIDCHSP---LEEGISSGK-RELDGGGIR 61 (374)
T ss_pred EEecCCCc---hHHHHhhcc-cccCCCCee
Confidence 35788888 488777766 444444444
No 219
>TIGR03129 one_C_dehyd_B formylmethanofuran dehydrogenase subunit B. Members of this largely archaeal protein family are subunit B of the formylmethanofuran dehydrogenase. Nomenclature in some bacteria may reflect inclusion of the formyltransferase described by TIGR03119 as part of the complex, and therefore call this protein formyltransferase/hydrolase complex Fhc subunit C. Note that this model does not distinguish tungsten (FwdB) from molybdenum-containing (FmdB) forms of this enzyme.
Probab=41.12 E-value=44 Score=33.88 Aligned_cols=51 Identities=16% Similarity=0.273 Sum_probs=34.9
Q ss_pred hhCCeEEEEccCcch-hhH--HHH-------HHHHHHCCCeEEEEcCCCCCCCCcccEEEe
Q 016025 325 KECDAFLVLGSSLMT-MSA--YRL-------VRAAHEAGSTIAIVNVGETRADDLTTLKIS 375 (396)
Q Consensus 325 ~~aDllLVvGTSl~V-~pa--~~L-------v~~a~~~g~~lIiIN~~~t~~d~~a~l~I~ 375 (396)
+++|++|++|+.... .|. .++ ...+.++|++++.|++..+.....++.+|.
T Consensus 136 ~~ad~il~~G~n~~~~~p~~~~r~~~~~~~~~~~~~~~g~~lividp~~s~t~~~ad~~l~ 196 (421)
T TIGR03129 136 NRADVIIYWGTNPMHAHPRHMSRYSVFPRGFFTQRGREDRTVIVVDPRKTDTAKLADYHLQ 196 (421)
T ss_pred hcCCEEEEEccCccccCchHHhhhhhhhhhhhhhcccCCCEEEEECCCCCCcchhhcceec
Confidence 469999999987543 332 222 112225688999999998887777777654
No 220
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=40.64 E-value=26 Score=29.44 Aligned_cols=51 Identities=24% Similarity=0.233 Sum_probs=32.7
Q ss_pred CCCHHHHHHHHHHHhCCCceeeecCccchHhhhCCCceee--ccccceeeeCCCCcccchh
Q 016025 179 QPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNPLEL--HGTVYTVVCLDCGFSFCRD 237 (396)
Q Consensus 179 ~Pn~~H~aLa~Le~~g~l~~VITQNIDgLh~kAG~~~iEl--HGsl~~~~C~~C~~~~~~~ 237 (396)
..+..|+.|..|++.|.+..+.+.|=-.. +++ +..-..+.|..|++..+.+
T Consensus 41 s~~TVYR~L~~L~e~Gli~~~~~~~~~~~--------Y~~~~~~~h~h~iC~~Cg~v~~~~ 93 (120)
T PF01475_consen 41 SLATVYRTLDLLEEAGLIRKIEFGDGESR--------YELSTCHHHHHFICTQCGKVIDLD 93 (120)
T ss_dssp -HHHHHHHHHHHHHTTSEEEEEETTSEEE--------EEESSSSSCEEEEETTTS-EEEE-
T ss_pred CHHHHHHHHHHHHHCCeEEEEEcCCCcce--------EeecCCCcceEEEECCCCCEEEec
Confidence 34568999999999998766544422222 333 3445568999999987654
No 221
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=40.58 E-value=51 Score=31.94 Aligned_cols=53 Identities=17% Similarity=0.080 Sum_probs=41.6
Q ss_pred HhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEE-cCCCCCCCCcccEEEeC
Q 016025 324 AKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIV-NVGETRADDLTTLKISA 376 (396)
Q Consensus 324 ~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiI-N~~~t~~d~~a~l~I~~ 376 (396)
+.+-|++|.+-.|..+..+...++.|+++|+++|.| |...++....+++.|.-
T Consensus 116 l~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~~I~It~~~~s~L~~~aD~~I~~ 169 (257)
T cd05007 116 LTERDVVIGIAASGRTPYVLGALRYARARGALTIGIACNPGSPLLQLADIAIAL 169 (257)
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCChhHHhCCEEEEc
Confidence 357899999999999999999999999999998666 44455665666666543
No 222
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=40.32 E-value=18 Score=22.75 Aligned_cols=9 Identities=22% Similarity=0.523 Sum_probs=6.9
Q ss_pred CcCCCCCCc
Q 016025 292 PTCQKCNGV 300 (396)
Q Consensus 292 P~Cp~Cgg~ 300 (396)
-.||.||-.
T Consensus 15 ~~Cp~CG~~ 23 (26)
T PF10571_consen 15 KFCPHCGYD 23 (26)
T ss_pred CcCCCCCCC
Confidence 469999964
No 223
>PRK05638 threonine synthase; Validated
Probab=40.14 E-value=16 Score=38.25 Aligned_cols=12 Identities=25% Similarity=0.780 Sum_probs=9.8
Q ss_pred eeeeCCCCcccc
Q 016025 224 TVVCLDCGFSFC 235 (396)
Q Consensus 224 ~~~C~~C~~~~~ 235 (396)
+++|..|++.|+
T Consensus 1 ~l~C~~Cg~~~~ 12 (442)
T PRK05638 1 KMKCPKCGREYN 12 (442)
T ss_pred CeEeCCCCCCCC
Confidence 468999998875
No 224
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=39.57 E-value=13 Score=29.12 Aligned_cols=12 Identities=17% Similarity=0.384 Sum_probs=5.9
Q ss_pred ceeeeCCCCccc
Q 016025 223 YTVVCLDCGFSF 234 (396)
Q Consensus 223 ~~~~C~~C~~~~ 234 (396)
...+|..|.+.|
T Consensus 16 ~~~~C~~C~~~~ 27 (70)
T PF07191_consen 16 GHYHCEACQKDY 27 (70)
T ss_dssp TEEEETTT--EE
T ss_pred CEEECccccccc
Confidence 455666666554
No 225
>PRK11382 frlB fructoselysine-6-P-deglycase; Provisional
Probab=39.55 E-value=46 Score=33.46 Aligned_cols=56 Identities=9% Similarity=0.072 Sum_probs=42.9
Q ss_pred HhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEE-cCCCCCCCCcccEEEeCcHH
Q 016025 324 AKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIV-NVGETRADDLTTLKISARLG 379 (396)
Q Consensus 324 ~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiI-N~~~t~~d~~a~l~I~~~a~ 379 (396)
+.+.|++|.+--|..+.-....++.++++|+++|-| |...+++...+|+.|.-.++
T Consensus 90 ~~~~~lvI~iS~SGeT~e~i~al~~ak~~Ga~~I~IT~~~~S~L~~~ad~~l~~~ag 146 (340)
T PRK11382 90 LDDRCAVIGVSDYGKTEEVIKALELGRACGALTAAFTKRADSPITSAAEFSIDYQAD 146 (340)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEECCCCChHHHhCCEEEEeCCC
Confidence 457789999977777777778888899999887666 66777888888887765543
No 226
>PLN02569 threonine synthase
Probab=39.44 E-value=17 Score=38.76 Aligned_cols=13 Identities=15% Similarity=0.212 Sum_probs=10.5
Q ss_pred eeeeCCCCcccch
Q 016025 224 TVVCLDCGFSFCR 236 (396)
Q Consensus 224 ~~~C~~C~~~~~~ 236 (396)
.++|..|++.|+.
T Consensus 49 ~l~C~~Cg~~y~~ 61 (484)
T PLN02569 49 FLECPLTGEKYSL 61 (484)
T ss_pred ccEeCCCCCcCCC
Confidence 4799999998853
No 227
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=39.29 E-value=83 Score=31.17 Aligned_cols=47 Identities=28% Similarity=0.396 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCC
Q 016025 315 DRADKAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVG 362 (396)
Q Consensus 315 ~~~~~a~~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~ 362 (396)
.+.+.+.+...++|++||||..-+ .-..+|.+.+.+.|.+.+.|...
T Consensus 197 ~RQ~a~~~la~~vD~miVVGg~nS-sNT~rL~ei~~~~~~~t~~Ie~~ 243 (280)
T TIGR00216 197 NRQDAVKELAPEVDLMIVIGGKNS-SNTTRLYEIAEEHGPPSYLIETA 243 (280)
T ss_pred HHHHHHHHHHhhCCEEEEECCCCC-chHHHHHHHHHHhCCCEEEECCh
Confidence 455667778889999999996432 22357887788888888888753
No 228
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=38.95 E-value=70 Score=29.82 Aligned_cols=53 Identities=17% Similarity=0.167 Sum_probs=40.0
Q ss_pred HHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEc-CCCCCCCCc---ccEEEe
Q 016025 323 AAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVN-VGETRADDL---TTLKIS 375 (396)
Q Consensus 323 ~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN-~~~t~~d~~---a~l~I~ 375 (396)
...+-|++|++-+|.....+....+.|+++|+++|.|- ....++.+. +|+.|.
T Consensus 106 ~~~~gDvli~iS~SG~s~~v~~a~~~Ak~~G~~vI~IT~~~~s~l~~l~~~~D~~i~ 162 (196)
T PRK10886 106 LGHAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGELAGLLGPQDVEIR 162 (196)
T ss_pred cCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCChhhhccccCCEEEE
Confidence 45678999999999999889999999999999977764 344554443 465544
No 229
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=38.49 E-value=1.8e+02 Score=25.94 Aligned_cols=75 Identities=15% Similarity=0.158 Sum_probs=47.5
Q ss_pred CCCHHHHHHHHHHHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCCCCCCCccc----EEEeCcHHHHHHHH
Q 016025 311 NVPKDRADKAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADDLTT----LKISARLGEILPRV 385 (396)
Q Consensus 311 ~lp~~~~~~a~~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~~t~~d~~a~----l~I~~~a~evL~~L 385 (396)
.++.+.++++.+.+.++.-+.++|.+.+-..+..+...-..-|.+++.++-.....-..-| +...|...+++..+
T Consensus 17 ~l~~~~l~~~~~~i~~a~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~D~vI~iS~sG~t~~~i~~~ 95 (179)
T cd05005 17 KIDEEELDKLISAILNAKRIFVYGAGRSGLVAKAFAMRLMHLGLNVYVVGETTTPAIGPGDLLIAISGSGETSSVVNAA 95 (179)
T ss_pred hcCHHHHHHHHHHHHhCCeEEEEecChhHHHHHHHHHHHHhCCCeEEEeCCCCCCCCCCCCEEEEEcCCCCcHHHHHHH
Confidence 4566778889999999999999998877666666655544557777666532222111222 23456666666543
No 230
>PRK13936 phosphoheptose isomerase; Provisional
Probab=37.90 E-value=81 Score=29.10 Aligned_cols=56 Identities=14% Similarity=0.186 Sum_probs=41.8
Q ss_pred HHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcC-CCCCCCC---cccEEEeCcH
Q 016025 323 AAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNV-GETRADD---LTTLKISARL 378 (396)
Q Consensus 323 ~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~-~~t~~d~---~a~l~I~~~a 378 (396)
...+-|++|.+-.|..+.-...++..++++|+++|.|-- ..++... .+|+.|.-..
T Consensus 108 ~~~~~Dv~i~iS~sG~t~~~~~~~~~ak~~g~~iI~IT~~~~s~l~~l~~~ad~~l~v~~ 167 (197)
T PRK13936 108 LGQPGDVLLAISTSGNSANVIQAIQAAHEREMHVVALTGRDGGKMASLLLPEDVEIRVPA 167 (197)
T ss_pred hCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCChhhhhhccCCEEEEeCC
Confidence 345789999999999988888999999999999887654 4444444 3676654433
No 231
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=37.45 E-value=35 Score=22.63 Aligned_cols=9 Identities=22% Similarity=0.674 Sum_probs=6.6
Q ss_pred CcCCCCCCc
Q 016025 292 PTCQKCNGV 300 (396)
Q Consensus 292 P~Cp~Cgg~ 300 (396)
-+|+.||..
T Consensus 18 irC~~CG~R 26 (32)
T PF03604_consen 18 IRCPECGHR 26 (32)
T ss_dssp SSBSSSS-S
T ss_pred EECCcCCCe
Confidence 489999974
No 232
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=37.20 E-value=59 Score=27.16 Aligned_cols=38 Identities=18% Similarity=0.158 Sum_probs=29.3
Q ss_pred HHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEc
Q 016025 323 AAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVN 360 (396)
Q Consensus 323 ~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN 360 (396)
.+.+-|++|++--|..+.-....++.++++|+++|.|-
T Consensus 40 ~~~~~dl~I~iS~SG~t~e~i~~~~~a~~~g~~iI~IT 77 (119)
T cd05017 40 FVDRKTLVIAVSYSGNTEETLSAVEQAKERGAKIVAIT 77 (119)
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEe
Confidence 44567888888878877777777888888888877764
No 233
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=37.11 E-value=56 Score=32.07 Aligned_cols=55 Identities=5% Similarity=-0.031 Sum_probs=43.9
Q ss_pred HHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcC-CCCCCCCcccEEEeCc
Q 016025 323 AAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNV-GETRADDLTTLKISAR 377 (396)
Q Consensus 323 ~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~-~~t~~d~~a~l~I~~~ 377 (396)
.+.+-|++|++-.|..+.-..+.++.|+++|+++|-|=- ..+++...+++.+.-.
T Consensus 86 ~~~~~d~~i~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~~~s~la~~ad~~l~~~ 141 (321)
T PRK11543 86 MIESRDVMLFISYSGGAKELDLIIPRLEDKSIALLAMTGKPTSPLGLAAKAVLDIS 141 (321)
T ss_pred ccCCCCEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEECCCCChhHHhCCEEEEcC
Confidence 446789999999999999899999999999999877754 4567777778777433
No 234
>KOG3954 consensus Electron transfer flavoprotein, alpha subunit [Energy production and conversion]
Probab=36.60 E-value=41 Score=33.21 Aligned_cols=58 Identities=12% Similarity=0.166 Sum_probs=43.4
Q ss_pred CeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCCC-CCCCcccEEEeCcHHHHHHHHHHhCC
Q 016025 328 DAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGET-RADDLTTLKISARLGEILPRVLDVGS 390 (396)
Q Consensus 328 DllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~~t-~~d~~a~l~I~~~a~evL~~L~~~~~ 390 (396)
.|.|.+|.|..+.=.+.| +.-..++-||.++. +.-..+|+-|.+|.=+++|+|.++|.
T Consensus 276 eLYiAvGisGAIQHLAGm-----KDSKvIvAINkDpdAPIFqvAD~GlvgDLfkiVPELtekL~ 334 (336)
T KOG3954|consen 276 ELYIAVGISGAIQHLAGM-----KDSKVIVAINKDPDAPIFQVADYGLVGDLFKIVPELTEKLP 334 (336)
T ss_pred ceEEEEeccHHHHHhhcC-----ccceEEEEecCCCCCCceeeecccchhhHHHHhHHHHHhcc
Confidence 478888888876533332 22345788999874 55667899999999999999999875
No 235
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=36.38 E-value=1e+02 Score=30.50 Aligned_cols=54 Identities=13% Similarity=0.012 Sum_probs=41.8
Q ss_pred HhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEE-cCCCCCCCCcccEEEeCc
Q 016025 324 AKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIV-NVGETRADDLTTLKISAR 377 (396)
Q Consensus 324 ~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiI-N~~~t~~d~~a~l~I~~~ 377 (396)
+.+.|++|.+-.|..+.-+...++.|++.|+++|.| |...+++...+|+.|.-.
T Consensus 129 l~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~tI~IT~~~~s~La~~aD~~I~~~ 183 (299)
T PRK05441 129 LTAKDVVVGIAASGRTPYVIGALEYARERGALTIGISCNPGSPLSKEADIAIEVV 183 (299)
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCChhhHhCCEEEEcC
Confidence 467899999988999988999999999999986655 444456666677766543
No 236
>PF09151 DUF1936: Domain of unknown function (DUF1936); InterPro: IPR015234 This domain is found in a set of hypothetical archaeal proteins. Its exact function has not, as yet, been defined. ; PDB: 2QH1_B 1PVM_B.
Probab=36.14 E-value=15 Score=24.33 Aligned_cols=11 Identities=64% Similarity=1.449 Sum_probs=7.3
Q ss_pred cCCCCC-CcccC
Q 016025 293 TCQKCN-GVLKP 303 (396)
Q Consensus 293 ~Cp~Cg-g~LRP 303 (396)
.||+|| |.|.|
T Consensus 3 lcpkcgvgvl~p 14 (36)
T PF09151_consen 3 LCPKCGVGVLEP 14 (36)
T ss_dssp B-TTTSSSBEEE
T ss_pred cCCccCceEEEE
Confidence 499998 56666
No 237
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=36.06 E-value=92 Score=29.54 Aligned_cols=54 Identities=9% Similarity=0.093 Sum_probs=43.3
Q ss_pred HHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEE-cCCCCCCCCcccEEEeC
Q 016025 323 AAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIV-NVGETRADDLTTLKISA 376 (396)
Q Consensus 323 ~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiI-N~~~t~~d~~a~l~I~~ 376 (396)
.+.+-|++|++-.|..+.-....++.|+++|+++|.| +...+++...+++.|.-
T Consensus 44 ~~~~~d~~i~iS~sG~t~~~~~~~~~a~~~g~~ii~iT~~~~s~l~~~~d~~l~~ 98 (268)
T TIGR00393 44 MVEPNDVVLMISYSGESLELLNLIPHLKRLSHKIIAFTGSPNSSLARAADYVLDI 98 (268)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCcEEEEECCCCCcccccCCEEEEc
Confidence 4567899999999999998999999999999987665 45566777777777654
No 238
>COG3091 SprT Zn-dependent metalloprotease, SprT family [General function prediction only]
Probab=36.00 E-value=10 Score=34.06 Aligned_cols=53 Identities=21% Similarity=0.202 Sum_probs=33.2
Q ss_pred HHHHHHHHHHH----hCCCceeeecCccchHhhhCCCc--eeeccccceeeeCCCCcccc
Q 016025 182 PAHFALASLEK----AGRIDCMITQNVDRLHHRAGSNP--LELHGTVYTVVCLDCGFSFC 235 (396)
Q Consensus 182 ~~H~aLa~Le~----~g~l~~VITQNIDgLh~kAG~~~--iElHGsl~~~~C~~C~~~~~ 235 (396)
.+|+.+-..-. +|+...-+-|.||||--..-... -.+.|.-+..+|. |+..|.
T Consensus 69 LaHl~ly~~~gr~~phg~ewk~lm~qV~~l~~~~~h~~~~~~v~~~~~~Y~C~-C~q~~l 127 (156)
T COG3091 69 LAHLHLYQEFGRYKPHGKEWKLLMQQVLGLRFCRTHQFEVQSVRRTTYPYRCQ-CQQHYL 127 (156)
T ss_pred HHHHHHHHHcCCCCCCchhHHHHHHHhCCCCCCccchHHHhhccccceeEEee-cCCccc
Confidence 45665555443 24555667788888854442221 3456788889999 998764
No 239
>COG1773 Rubredoxin [Energy production and conversion]
Probab=35.77 E-value=41 Score=25.20 Aligned_cols=13 Identities=23% Similarity=0.608 Sum_probs=11.1
Q ss_pred ceeeeCCCCcccc
Q 016025 223 YTVVCLDCGFSFC 235 (396)
Q Consensus 223 ~~~~C~~C~~~~~ 235 (396)
.+++|..|+..|+
T Consensus 2 ~~~~C~~CG~vYd 14 (55)
T COG1773 2 KRWRCSVCGYVYD 14 (55)
T ss_pred CceEecCCceEec
Confidence 4689999999885
No 240
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=35.45 E-value=26 Score=32.06 Aligned_cols=11 Identities=36% Similarity=0.960 Sum_probs=9.0
Q ss_pred eeeeCCCCccc
Q 016025 224 TVVCLDCGFSF 234 (396)
Q Consensus 224 ~~~C~~C~~~~ 234 (396)
.++|..||+..
T Consensus 134 ~~vC~vCGy~~ 144 (166)
T COG1592 134 VWVCPVCGYTH 144 (166)
T ss_pred EEEcCCCCCcc
Confidence 78999999754
No 241
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=35.41 E-value=65 Score=29.74 Aligned_cols=47 Identities=21% Similarity=0.301 Sum_probs=32.3
Q ss_pred CHHHHHHHHHHHhh--CCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCC
Q 016025 313 PKDRADKAMEAAKE--CDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVG 362 (396)
Q Consensus 313 p~~~~~~a~~~~~~--aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~ 362 (396)
|...++...+.+++ .+-+++|||||--+-+..|. .+.|.+-|+||+-
T Consensus 42 p~~a~~~l~~~i~~~~~~~~~liGSSlGG~~A~~La---~~~~~~avLiNPa 90 (187)
T PF05728_consen 42 PEEAIAQLEQLIEELKPENVVLIGSSLGGFYATYLA---ERYGLPAVLINPA 90 (187)
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEEEChHHHHHHHHH---HHhCCCEEEEcCC
Confidence 44555555555554 23489999999887777663 3447888999965
No 242
>COG4821 Uncharacterized protein containing SIS (Sugar ISomerase) phosphosugar binding domain [General function prediction only]
Probab=35.26 E-value=68 Score=30.53 Aligned_cols=39 Identities=18% Similarity=0.227 Sum_probs=31.5
Q ss_pred HHHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEc
Q 016025 322 EAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVN 360 (396)
Q Consensus 322 ~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN 360 (396)
..++..|+++|+-+|..-+---.+.+++++.|+++|.|-
T Consensus 100 ~~i~~~DVliviSnSGrNpvpie~A~~~rekGa~vI~vT 138 (243)
T COG4821 100 LQIRPNDVLIVISNSGRNPVPIEVAEYAREKGAKVIAVT 138 (243)
T ss_pred hcCCCCCEEEEEeCCCCCCcchHHHHHHHhcCCeEEEEe
Confidence 345678999999998876555677888999999998875
No 243
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=35.14 E-value=1.2e+02 Score=30.14 Aligned_cols=51 Identities=16% Similarity=0.144 Sum_probs=41.1
Q ss_pred hhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEc-CCCCCCCCcccEEEe
Q 016025 325 KECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVN-VGETRADDLTTLKIS 375 (396)
Q Consensus 325 ~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN-~~~t~~d~~a~l~I~ 375 (396)
.+-|++|.+-.|..+.-+...++.+++.|+++|-|. ...+++...+++.|.
T Consensus 126 ~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~~IaIT~~~~s~La~~aD~~I~ 177 (296)
T PRK12570 126 TADDVVVGIAASGRTPYVIGALEYAKQIGATTIALSCNPDSPIAKIADIAIS 177 (296)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCChhHHhCCEEEe
Confidence 577999999999999889999999999999987775 444566666777665
No 244
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=34.57 E-value=2.9e+02 Score=24.62 Aligned_cols=70 Identities=20% Similarity=0.224 Sum_probs=47.4
Q ss_pred HHHHHHHhhCCeEEEEccCcch-hhHHHHHHHHHHCCCeEEEEcCCCC--------------CCCCcccEEEeCcHHHHH
Q 016025 318 DKAMEAAKECDAFLVLGSSLMT-MSAYRLVRAAHEAGSTIAIVNVGET--------------RADDLTTLKISARLGEIL 382 (396)
Q Consensus 318 ~~a~~~~~~aDllLVvGTSl~V-~pa~~Lv~~a~~~g~~lIiIN~~~t--------------~~d~~a~l~I~~~a~evL 382 (396)
+...+.+.++-.+-+||-|-.- -|.++......++|-+++-||++-. ..+...|++.-=+-.|.+
T Consensus 7 ~~i~~iL~~~K~IAvVG~S~~P~r~sy~V~kyL~~~GY~ViPVNP~~~~~eiLG~k~y~sL~dIpe~IDiVdvFR~~e~~ 86 (140)
T COG1832 7 EDIAEILKSAKTIAVVGASDKPDRPSYRVAKYLQQKGYRVIPVNPKLAGEEILGEKVYPSLADIPEPIDIVDVFRRSEAA 86 (140)
T ss_pred HHHHHHHHhCceEEEEecCCCCCccHHHHHHHHHHCCCEEEeeCcccchHHhcCchhhhcHHhCCCCCcEEEEecChhhh
Confidence 3455677889999999988775 5667777777888999999999321 223445555444455556
Q ss_pred HHHHH
Q 016025 383 PRVLD 387 (396)
Q Consensus 383 ~~L~~ 387 (396)
+++++
T Consensus 87 ~~i~~ 91 (140)
T COG1832 87 PEVAR 91 (140)
T ss_pred HHHHH
Confidence 65553
No 245
>PRK13371 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=34.57 E-value=2.1e+02 Score=29.75 Aligned_cols=91 Identities=15% Similarity=0.237 Sum_probs=53.0
Q ss_pred cEEEcCCCC--CHHHHHHHHHHHh-hCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCCC-CCC------------
Q 016025 304 DVVFFGDNV--PKDRADKAMEAAK-ECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGET-RAD------------ 367 (396)
Q Consensus 304 ~VVlFGE~l--p~~~~~~a~~~~~-~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~~t-~~d------------ 367 (396)
++..|+.-= -..+.+.+.+... ++|++||||..-+ .-..+|.+.+.+.|.+.+.|+.... ..+
T Consensus 263 ~~~v~nTIC~AT~~RQ~A~~~La~~~vD~miVVGG~nS-SNT~rL~eia~~~g~~ty~Ie~~~eL~~~~~i~h~~~~~~~ 341 (387)
T PRK13371 263 HFLSFNTICDATQERQDAMFSLVEEPLDLMVVIGGYNS-SNTTHLQEIAIERGIPSYHIDSPERILSGNSIEHKPLGKEL 341 (387)
T ss_pred cccccCCcchhHHHHHHHHHHHhhcCCCEEEEECCCCC-ccHHHHHHHHHhcCCCEEEECCHHHcCCccccccccccchh
Confidence 555564421 1233344455544 6999999996332 2235777778888888888875421 111
Q ss_pred --------C-cccEEEeCcH-------HHHHHHHHHhCCCCCCC
Q 016025 368 --------D-LTTLKISARL-------GEILPRVLDVGSLSIPA 395 (396)
Q Consensus 368 --------~-~a~l~I~~~a-------~evL~~L~~~~~l~~p~ 395 (396)
. ...+-|.+.+ .+|+..|.+..+...|.
T Consensus 342 ~~t~~wl~~~~~~VGITAGASTP~~lI~eVi~~l~~l~~~~~~~ 385 (387)
T PRK13371 342 VVTENWLPEGPVTVGITSGASTPDKVVEDVIEKIFALKEDARPV 385 (387)
T ss_pred hhhhhhhccCCCEEEEecCCCCCHHHHHHHHHHHHHhhcccccc
Confidence 1 1133344433 47777777777777765
No 246
>PF11071 DUF2872: Protein of unknown function (DUF2872); InterPro: IPR019884 This entry represents a family of uncharacterised proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=34.34 E-value=1.2e+02 Score=26.90 Aligned_cols=66 Identities=12% Similarity=0.165 Sum_probs=43.8
Q ss_pred HHHHHHhhCCeEEE-EccCcchhhHHHHHHHHHHCCCeEEEEcCCCCCC--CC--cccEEEeCcHHHHHHH
Q 016025 319 KAMEAAKECDAFLV-LGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRA--DD--LTTLKISARLGEILPR 384 (396)
Q Consensus 319 ~a~~~~~~aDllLV-vGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~~t~~--d~--~a~l~I~~~a~evL~~ 384 (396)
+....+++||+++| .|-.....-++-=...|...|.++|++...+..- .+ .+.+.+-...++++.-
T Consensus 65 RT~~li~~aDvVVvrFGekYKQWNaAfDAg~a~AlgKplI~lh~~~~~HpLKEvda~A~a~~et~~Qvv~i 135 (141)
T PF11071_consen 65 RTRTLIEKADVVVVRFGEKYKQWNAAFDAGYAAALGKPLITLHPEELHHPLKEVDAAALAVAETPEQVVEI 135 (141)
T ss_pred HHHHHHhhCCEEEEEechHHHHHHHHhhHHHHHHcCCCeEEecchhccccHHHHhHhhHhhhCCHHHHHHH
Confidence 45668899998887 4888877777666667777899999998775321 11 2223344555555543
No 247
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=34.09 E-value=83 Score=31.04 Aligned_cols=55 Identities=7% Similarity=0.108 Sum_probs=43.7
Q ss_pred HHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcC-CCCCCCCcccEEEeCc
Q 016025 323 AAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNV-GETRADDLTTLKISAR 377 (396)
Q Consensus 323 ~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~-~~t~~d~~a~l~I~~~ 377 (396)
.+.+.|++|++-.|..+.-....++.|+++|+++|.|-. ..+++...+++.+...
T Consensus 91 ~~~~~d~~I~iS~sG~t~~~~~~~~~ak~~g~~vi~iT~~~~s~la~~ad~~l~~~ 146 (326)
T PRK10892 91 MVTPQDVVIAISNSGESSEILALIPVLKRLHVPLICITGRPESSMARAADIHLCVK 146 (326)
T ss_pred cCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCcEEEEECCCCCcccccCCEEEEeC
Confidence 456789999999999999999999999999998776654 4567777788776543
No 248
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=33.82 E-value=2.2e+02 Score=25.35 Aligned_cols=50 Identities=12% Similarity=0.199 Sum_probs=37.4
Q ss_pred CCCHHHHHHHHHHHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEc
Q 016025 311 NVPKDRADKAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVN 360 (396)
Q Consensus 311 ~lp~~~~~~a~~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN 360 (396)
.++.+.++++.+.+.++.-+.++|.+.+-..+..+......-|.....+.
T Consensus 14 ~l~~~~~~~~~~~l~~a~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~ 63 (179)
T TIGR03127 14 RIDEEELDKLADKIIKAKRIFVAGAGRSGLVGKAFAMRLMHLGFNVYVVG 63 (179)
T ss_pred hCCHHHHHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHHhCCCeEEEeC
Confidence 45667788899999999999999998876666666665555566665554
No 249
>cd02771 MopB_NDH-1_NuoG2-N7 MopB_NDH-1_NuoG2-N7: The second domain of the NuoG subunit (with a [4Fe-4S] cluster, N7) of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1) found in various bacteria. The NDH-1 is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. In Escherichia coli NDH-1, the largest subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the functional enzyme. The NuoG subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Unique to this group, compared to the other prokaryotic and eukaryotic groups in this domain
Probab=33.77 E-value=50 Score=34.35 Aligned_cols=31 Identities=29% Similarity=0.353 Sum_probs=19.4
Q ss_pred HHHhhCCeEEEEccCcch-hhH-HHHH-HHHHHC
Q 016025 322 EAAKECDAFLVLGSSLMT-MSA-YRLV-RAAHEA 352 (396)
Q Consensus 322 ~~~~~aDllLVvGTSl~V-~pa-~~Lv-~~a~~~ 352 (396)
+.++++|++|++|+.... .|. ...+ ..++++
T Consensus 141 ~di~~ad~il~~G~n~~~~~p~~~~~~~~a~~~~ 174 (472)
T cd02771 141 RDIESADAVLVLGEDLTQTAPRIALALRQAARRK 174 (472)
T ss_pred HHHHhCCEEEEEeCCccccchHHHHHHHHHHHcC
Confidence 456789999999987653 443 3333 334455
No 250
>TIGR02164 torA trimethylamine-N-oxide reductase TorA. This very narrowly defined family represents TorA, part of a family of related molybdoenzymes that include biotin sulfoxide reductases, dimethyl sulfoxide reductases, and at least two different subfamilies of trimethylamine-N-oxide reductases. A single enzyme from the larger family may have more than one activity. TorA typically is located in the periplasm, has a Tat (twin-arginine translocation)-dependent signal sequence, and is encoded in a torCAD operon.
Probab=33.77 E-value=65 Score=36.42 Aligned_cols=51 Identities=8% Similarity=0.162 Sum_probs=34.6
Q ss_pred HhhCCeEEEEccCcch----------hhHHHHHHHHHH---C-CCeEEEEcCCCCCCCCc-ccEEE
Q 016025 324 AKECDAFLVLGSSLMT----------MSAYRLVRAAHE---A-GSTIAIVNVGETRADDL-TTLKI 374 (396)
Q Consensus 324 ~~~aDllLVvGTSl~V----------~pa~~Lv~~a~~---~-g~~lIiIN~~~t~~d~~-a~l~I 374 (396)
+.++|++|+.|+.... .|....+..+++ + |+++|.|++..|..... ++.+|
T Consensus 208 ~~~a~~il~wG~Np~~s~~~~~~~~~~~~~~~~~~~~~~~~~ggaklIvIDPr~t~tA~~~ad~~l 273 (822)
T TIGR02164 208 LENSDTIVLWANDPVKNLQVGWNCETHESFAYLAQLKEKVAAGEINVISIDPVVTKTQAYLGCEHL 273 (822)
T ss_pred HHhCCEEEEECCCHHHhcCcccccCCCchHHHHHHHHHHhhCCCceEEEECCCCCchhhhccCeEe
Confidence 5799999999988642 354444433332 4 48999999998876554 45554
No 251
>PRK14991 tetrathionate reductase subunit A; Provisional
Probab=33.11 E-value=81 Score=36.83 Aligned_cols=53 Identities=13% Similarity=0.060 Sum_probs=37.4
Q ss_pred HHhhCCeEEEEccCcch--hhH---HHHHHHHHHCC-CeEEEEcCCCCCCC----CcccEEEe
Q 016025 323 AAKECDAFLVLGSSLMT--MSA---YRLVRAAHEAG-STIAIVNVGETRAD----DLTTLKIS 375 (396)
Q Consensus 323 ~~~~aDllLVvGTSl~V--~pa---~~Lv~~a~~~g-~~lIiIN~~~t~~d----~~a~l~I~ 375 (396)
.+.+++++|++|++-.. .|+ .+.+..++++| +++|.|++.-|... ..++.+|.
T Consensus 282 D~~~a~~il~~G~Np~~s~~~~~~~~~~l~~ar~~gg~k~VVVDPr~t~ta~~~A~~Ad~wlp 344 (1031)
T PRK14991 282 DWDNVEFALFIGTSPAQSGNPFKRQARQLANARTRGNFEYVVVAPALPLSSSLAAGDNNRWLP 344 (1031)
T ss_pred hhhcCcEEEEeCcChhHhCCchHHHHHHHHHHHHcCCCEEEEECCCCCCchhhhhhcCCEEeC
Confidence 56789999999998654 343 33455677676 89999999887643 44566654
No 252
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=33.09 E-value=1.1e+02 Score=30.37 Aligned_cols=59 Identities=24% Similarity=0.402 Sum_probs=37.8
Q ss_pred CcEEEcCCCC--CHHHHHHHHHHHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCC
Q 016025 303 PDVVFFGDNV--PKDRADKAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVG 362 (396)
Q Consensus 303 P~VVlFGE~l--p~~~~~~a~~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~ 362 (396)
|++..|++-= -..+.+.+.+..+++|++||||..-+ .-..+|.+.+.+.|.+.+.|...
T Consensus 184 ~~~~v~~TIC~aT~~RQ~a~~~La~~vD~miVVGg~~S-sNT~rL~eia~~~~~~t~~Ie~~ 244 (281)
T PRK12360 184 KELVFFNTICSATKKRQESAKELSKEVDVMIVIGGKHS-SNTQKLVKICEKNCPNTFHIETA 244 (281)
T ss_pred cccccCCCcchhhhhHHHHHHHHHHhCCEEEEecCCCC-ccHHHHHHHHHHHCCCEEEECCh
Confidence 4555554421 12345566777789999999996332 22357777777778777788743
No 253
>PRK00762 hypA hydrogenase nickel incorporation protein; Provisional
Probab=32.80 E-value=29 Score=30.01 Aligned_cols=19 Identities=21% Similarity=0.527 Sum_probs=11.6
Q ss_pred eeeccccceeeeCCCCcccc
Q 016025 216 LELHGTVYTVVCLDCGFSFC 235 (396)
Q Consensus 216 iElHGsl~~~~C~~C~~~~~ 235 (396)
++++=-=...+| .|++.+.
T Consensus 62 L~I~~vp~~~~C-~Cg~~~~ 80 (124)
T PRK00762 62 LIVEMIPVEIEC-ECGYEGV 80 (124)
T ss_pred EEEEecCeeEEe-eCcCccc
Confidence 344333445689 9997653
No 254
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=32.31 E-value=26 Score=36.70 Aligned_cols=11 Identities=36% Similarity=1.093 Sum_probs=8.8
Q ss_pred eeeeCCCCccc
Q 016025 224 TVVCLDCGFSF 234 (396)
Q Consensus 224 ~~~C~~C~~~~ 234 (396)
...|.+|+..+
T Consensus 7 ~f~C~~CG~~s 17 (456)
T COG1066 7 AFVCQECGYVS 17 (456)
T ss_pred EEEcccCCCCC
Confidence 47899999765
No 255
>PRK09462 fur ferric uptake regulator; Provisional
Probab=32.28 E-value=61 Score=28.40 Aligned_cols=53 Identities=19% Similarity=0.239 Sum_probs=34.6
Q ss_pred cCCCCHHHHHHHHHHHhCCCceeeecCccchHhhhCCCceeec--cccceeeeCCCCcccchh
Q 016025 177 AAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNPLELH--GTVYTVVCLDCGFSFCRD 237 (396)
Q Consensus 177 ~a~Pn~~H~aLa~Le~~g~l~~VITQNIDgLh~kAG~~~iElH--Gsl~~~~C~~C~~~~~~~ 237 (396)
...+...|+.|..|++.|.+..+-..| | ...+++. +.-..++|..|++....+
T Consensus 49 ~i~~aTVYR~L~~L~e~Gli~~~~~~~--~------~~~y~~~~~~~H~H~iC~~Cg~i~~i~ 103 (148)
T PRK09462 49 EIGLATVYRVLNQFDDAGIVTRHNFEG--G------KSVFELTQQHHHDHLICLDCGKVIEFS 103 (148)
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEEcCC--C------cEEEEeCCCCCCCceEECCCCCEEEeC
Confidence 345678899999999999886665444 1 1113321 112358999999887643
No 256
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=32.27 E-value=31 Score=33.77 Aligned_cols=74 Identities=20% Similarity=0.162 Sum_probs=54.7
Q ss_pred cchHHhhhhcccccceeecCCC-----ceeEEeeeeeeecCCCCCCCCCCCCCCccccCCCCCCCCCCcchHHHHhcCCc
Q 016025 43 QSSIKAQQLLSKGRRVFPHQGS-----VKFVQTSWRMSIPGLPSSRHEDKAPASPKVLRDKKAVPDADPPSIEDINQFAK 117 (396)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ak~ 117 (396)
.--+++-.+.++|-.|.||... .|.+...|..-.|-++- |++.- .-..+..++.|.+...
T Consensus 125 etl~Aae~Lv~eGF~VlPY~~~D~v~a~rLed~Gc~aVMPlgsP--------IGSg~-------Gl~n~~~l~~i~e~~~ 189 (267)
T CHL00162 125 GTLKAAEFLVKKGFTVLPYINADPMLAKHLEDIGCATVMPLGSP--------IGSGQ-------GLQNLLNLQIIIENAK 189 (267)
T ss_pred HHHHHHHHHHHCCCEEeecCCCCHHHHHHHHHcCCeEEeeccCc--------ccCCC-------CCCCHHHHHHHHHcCC
Confidence 3346777888999999998876 67888899888896622 33311 2334457888888777
Q ss_pred EEEEECCcccccCC
Q 016025 118 LIVLTGAGISTECG 131 (396)
Q Consensus 118 IVvlTGAGISaaSG 131 (396)
+-|+.||||++.|-
T Consensus 190 vpVivdAGIgt~sD 203 (267)
T CHL00162 190 IPVIIDAGIGTPSE 203 (267)
T ss_pred CcEEEeCCcCCHHH
Confidence 99999999999873
No 257
>COG1282 PntB NAD/NADP transhydrogenase beta subunit [Energy production and conversion]
Probab=31.28 E-value=66 Score=33.25 Aligned_cols=87 Identities=16% Similarity=0.135 Sum_probs=55.6
Q ss_pred cCcEEEcCCCCCHHH---HHHHHHHHhhCCeEEEEccCcchhhHHHHHHHHHH--------CCCeEEEEcCCC-----CC
Q 016025 302 KPDVVFFGDNVPKDR---ADKAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHE--------AGSTIAIVNVGE-----TR 365 (396)
Q Consensus 302 RP~VVlFGE~lp~~~---~~~a~~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~--------~g~~lIiIN~~~-----t~ 365 (396)
..||++-.-.+|.+. +++.-+...++|++||+|..=.|-|+++-= ...= .+++.++++... .-
T Consensus 356 HMNVLLAEA~VpYd~v~emddIN~dF~~tDVvlVIGANDvvNPAA~~D-~SPI~GMPiLeV~KAk~viv~KRsM~sGyAG 434 (463)
T COG1282 356 HMNVLLAEAKVPYDIVLEMDEINDDFADTDVVLVIGANDVVNPAAQDD-NSPIAGMPVLEVWKAKTVIVFKRSMNSGYAG 434 (463)
T ss_pred chhhhhhhccCCHHHHhhHHhhcchhccccEEEEEccCCCCChhhccC-CCCcCCCceeeeeccceEEEEeccccccccc
Confidence 457777666778763 455566788999999999999998876531 1000 134556665432 11
Q ss_pred CCC-----cccEEEeCcHHHHHHHHHHhC
Q 016025 366 ADD-----LTTLKISARLGEILPRVLDVG 389 (396)
Q Consensus 366 ~d~-----~a~l~I~~~a~evL~~L~~~~ 389 (396)
.++ ..+.-+-+|+.+...++++.+
T Consensus 435 v~N~LFy~d~T~MlFGDAKk~V~~i~k~l 463 (463)
T COG1282 435 VQNPLFYKDNTMMLFGDAKKSVDEILKAL 463 (463)
T ss_pred cCCcceeccCcEEEeccHHHHHHHHHhcC
Confidence 222 234457899999999887653
No 258
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=31.27 E-value=1.2e+02 Score=30.22 Aligned_cols=47 Identities=28% Similarity=0.398 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCC
Q 016025 315 DRADKAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVG 362 (396)
Q Consensus 315 ~~~~~a~~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~ 362 (396)
.+.+.+.+..+++|++||||..-+ .-..+|.+.+++.|.+.+.|...
T Consensus 199 ~RQ~a~~~La~~vD~miVVGg~~S-sNT~kL~~i~~~~~~~t~~Ie~~ 245 (298)
T PRK01045 199 NRQEAVKELAPQADLVIVVGSKNS-SNSNRLREVAEEAGAPAYLIDDA 245 (298)
T ss_pred HHHHHHHHHHhhCCEEEEECCCCC-ccHHHHHHHHHHHCCCEEEECCh
Confidence 355667777889999999996332 22357777777778778888743
No 259
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=31.26 E-value=24 Score=32.52 Aligned_cols=11 Identities=45% Similarity=0.806 Sum_probs=9.0
Q ss_pred CcCCCCCCccc
Q 016025 292 PTCQKCNGVLK 302 (396)
Q Consensus 292 P~Cp~Cgg~LR 302 (396)
-.||.||+.|.
T Consensus 133 F~Cp~Cg~~L~ 143 (176)
T COG1675 133 FTCPKCGEDLE 143 (176)
T ss_pred CCCCCCCchhh
Confidence 46999998765
No 260
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=30.64 E-value=29 Score=40.34 Aligned_cols=13 Identities=31% Similarity=0.700 Sum_probs=9.9
Q ss_pred CcCCCCCCcccCc
Q 016025 292 PTCQKCNGVLKPD 304 (396)
Q Consensus 292 P~Cp~Cgg~LRP~ 304 (396)
-.||.|||.+.+-
T Consensus 839 ~~~~~~~~~~~~~ 851 (1006)
T PRK12775 839 GMCPACGGKLQAL 851 (1006)
T ss_pred CcCcccccchhhh
Confidence 3799999976553
No 261
>PF02233 PNTB: NAD(P) transhydrogenase beta subunit; InterPro: IPR012136 NAD(P) transhydrogenase catalyses the transfer of reducing equivalents between NAD(H) and NADP(H), coupled to the translocation of protons across a membrane []. It is an integral membrane protein found in most organisms except for yeasts, plants and some bacterial species. In bacterial species it is located in the cytoplasmic membrane, while in mitochondria it is located in the inner membrane. Under most physiological conditions this enzyme synthesises NADPH, driven by consumption of the proton electrochemical gradient. The resulting NADPH is subsequently used for biosynthetic reactions or the reduction of glutathione. The global structure of this enzyme is similar in all organisms, consisting of three distinct domains, though the polypeptide composition can vary. Domain I binds NAD(+)/NADH, domain II is a hydrophobic membrane-spanning domain, and domain III binds NADP(+)/NADPH. Domain I is composed of two subdomains, both of which form a Rossman fold, while domain III consists of a single Rossman fold where the NADP(+) is flipped relative to the normal orientation of bound nucleotides within the Rossman fold [, , ]. Several residues within these domains are thought to make functionally important interdomain contacts for hydride transfer between these domains []. Proton translocation occurs through domain II and is thought to induce conformational changes which are transmitted across domain III to the site of hydride transfer between domains I and III. This entry represents the beta subunit found in bacterial two-subunit NADP(H) transhydrogenases. This subunit forms domain III and part of the transmembrane domain II. ; GO: 0008750 NAD(P)+ transhydrogenase (AB-specific) activity, 0050661 NADP binding, 0055114 oxidation-reduction process, 0016021 integral to membrane; PDB: 1PT9_A 1DJL_A 1U31_B 2BRU_C 1PTJ_C 1HZZ_C 2FRD_C 2FSV_C 1XLT_C 1U2G_C ....
Probab=30.61 E-value=18 Score=38.29 Aligned_cols=85 Identities=16% Similarity=0.159 Sum_probs=49.8
Q ss_pred CcEEEcCCCCCHH---HHHHHHHHHhhCCeEEEEccCcchhhHHHH---------HH-HHHHCCCeEEEEcCCCCC----
Q 016025 303 PDVVFFGDNVPKD---RADKAMEAAKECDAFLVLGSSLMTMSAYRL---------VR-AAHEAGSTIAIVNVGETR---- 365 (396)
Q Consensus 303 P~VVlFGE~lp~~---~~~~a~~~~~~aDllLVvGTSl~V~pa~~L---------v~-~a~~~g~~lIiIN~~~t~---- 365 (396)
.||++=.-.+|.+ .+++.-+..++.|+.||+|..=.|-|+++- |- ++- +-.++|.++.+-.+
T Consensus 356 MNVLLAEa~VpYd~~~emdeiN~~f~~~Dv~lViGANDvVNPaA~~d~~SpI~GMPil~v~-~ak~Viv~Krsm~~Gyag 434 (463)
T PF02233_consen 356 MNVLLAEANVPYDIVKEMDEINPDFPDTDVVLVIGANDVVNPAAREDPNSPIYGMPILEVW-KAKQVIVIKRSMSPGYAG 434 (463)
T ss_dssp HHHHHHHCT--GGGEEEHHHHGGGGGG-SEEEEES-SGGG-CHHCCSTTSTTTTSS---GG-GSSEEEEEESSS--TTTS
T ss_pred ceEEEEecCCCHHHHhhhhhcccchhcCCEEEEeccccccCchhccCCCCCCCCCeecchh-hcCeEEEEEcCCCCCCCC
Confidence 4666655556665 356666788899999999999988776653 11 111 12356666655321
Q ss_pred -----CCCcccEEEeCcHHHHHHHHHHh
Q 016025 366 -----ADDLTTLKISARLGEILPRVLDV 388 (396)
Q Consensus 366 -----~d~~a~l~I~~~a~evL~~L~~~ 388 (396)
+......-+-||+.+.+.++.+.
T Consensus 435 v~NpLF~~~nt~MlfGDAk~~~~~l~~~ 462 (463)
T PF02233_consen 435 VDNPLFYKDNTRMLFGDAKKTLEELVAE 462 (463)
T ss_dssp -S-GGGGSTTEEEEES-HHHHHHHHHHH
T ss_pred CCCcceecCCcEEEeccHHHHHHHHHHh
Confidence 12234456899999999998764
No 262
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=30.50 E-value=23 Score=29.05 Aligned_cols=16 Identities=31% Similarity=0.542 Sum_probs=12.5
Q ss_pred cCCcEEEEECCccccc
Q 016025 114 QFAKLIVLTGAGISTE 129 (396)
Q Consensus 114 ~ak~IVvlTGAGISaa 129 (396)
+.++|+++.|+|+|++
T Consensus 2 ~~~~ILl~C~~G~sSS 17 (95)
T TIGR00853 2 NETNILLLCAAGMSTS 17 (95)
T ss_pred CccEEEEECCCchhHH
Confidence 3568889999998855
No 263
>PRK08329 threonine synthase; Validated
Probab=30.48 E-value=26 Score=35.38 Aligned_cols=11 Identities=27% Similarity=0.878 Sum_probs=9.3
Q ss_pred eeeCCCCcccc
Q 016025 225 VVCLDCGFSFC 235 (396)
Q Consensus 225 ~~C~~C~~~~~ 235 (396)
++|..|++.|+
T Consensus 2 l~C~~Cg~~~~ 12 (347)
T PRK08329 2 LRCTKCGRTYE 12 (347)
T ss_pred cCcCCCCCCcC
Confidence 58999998875
No 264
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=30.43 E-value=1e+02 Score=33.71 Aligned_cols=55 Identities=15% Similarity=0.196 Sum_probs=44.6
Q ss_pred HHHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCCCCCCCcccEEEeC
Q 016025 322 EAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISA 376 (396)
Q Consensus 322 ~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~~t~~d~~a~l~I~~ 376 (396)
..+.+-|++|++--|..+.-..++++.|+++|+++|.|--..+++...+|+.|.-
T Consensus 511 ~~l~~~DvvI~iS~sG~t~e~i~~~~~Ak~~Ga~vIaIT~~~spLa~~aD~~L~~ 565 (638)
T PRK14101 511 ALLGKGDVIVAVSKSGRAPELLRVLDVAMQAGAKVIAITSSNTPLAKRATVALET 565 (638)
T ss_pred hcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEcCCCChhHhhCCEEEEc
Confidence 3456789999999999888889999999999999988876556666677777654
No 265
>PRK15102 trimethylamine N-oxide reductase I catalytic subunit; Provisional
Probab=30.33 E-value=77 Score=35.86 Aligned_cols=46 Identities=9% Similarity=0.201 Sum_probs=31.9
Q ss_pred HhhCCeEEEEccCcch----------hhHHHHHHHHH---HC-CCeEEEEcCCCCCCCCc
Q 016025 324 AKECDAFLVLGSSLMT----------MSAYRLVRAAH---EA-GSTIAIVNVGETRADDL 369 (396)
Q Consensus 324 ~~~aDllLVvGTSl~V----------~pa~~Lv~~a~---~~-g~~lIiIN~~~t~~d~~ 369 (396)
+.++|++|+.|+.... .|...+...++ ++ |+++|.|++..|.....
T Consensus 211 ~~~a~~ii~wG~Np~~s~~~~~~~~~~p~~~~~~~~~~~~~~~gaklIvIDPr~t~tA~~ 270 (825)
T PRK15102 211 LENSKTIVLWGSDPVKNLQVGWNCETHESYAYLAQLKEKVAKGEINVISIDPVVTKTQNY 270 (825)
T ss_pred HHhCCEEEEECCChHHhccCccccCCCcHHHHHHHHHHHhhcCCCEEEEECCCCCchhhh
Confidence 5789999999987642 34444433332 33 69999999998876553
No 266
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=30.09 E-value=32 Score=34.07 Aligned_cols=15 Identities=27% Similarity=0.578 Sum_probs=10.8
Q ss_pred CCcCCCCCC--cccCcE
Q 016025 291 IPTCQKCNG--VLKPDV 305 (396)
Q Consensus 291 iP~Cp~Cgg--~LRP~V 305 (396)
.+.||+||+ .+.|-.
T Consensus 368 ~~~c~~c~~~~~~~~~~ 384 (389)
T PRK11788 368 YWHCPSCKAWETIKPIR 384 (389)
T ss_pred eeECcCCCCccCcCCcc
Confidence 578999996 455543
No 267
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=29.79 E-value=26 Score=21.74 Aligned_cols=8 Identities=25% Similarity=0.858 Sum_probs=4.4
Q ss_pred cCCCCCCc
Q 016025 293 TCQKCNGV 300 (396)
Q Consensus 293 ~Cp~Cgg~ 300 (396)
.||.||..
T Consensus 18 fC~~CG~~ 25 (26)
T PF13248_consen 18 FCPNCGAK 25 (26)
T ss_pred cChhhCCC
Confidence 46666554
No 268
>COG1029 FwdB Formylmethanofuran dehydrogenase subunit B [Energy production and conversion]
Probab=29.79 E-value=1e+02 Score=31.76 Aligned_cols=70 Identities=26% Similarity=0.278 Sum_probs=43.9
Q ss_pred CcEEEcCCCCCHHH--HHHHHHHH--hhCCeEEEEccCcchhhHHHHHHHHHH--CCCeEEEEcCCCCCCCCcccEEEeC
Q 016025 303 PDVVFFGDNVPKDR--ADKAMEAA--KECDAFLVLGSSLMTMSAYRLVRAAHE--AGSTIAIVNVGETRADDLTTLKISA 376 (396)
Q Consensus 303 P~VVlFGE~lp~~~--~~~a~~~~--~~aDllLVvGTSl~V~pa~~Lv~~a~~--~g~~lIiIN~~~t~~d~~a~l~I~~ 376 (396)
|.-+-|-+.+|..- -..+.+.+ +++|..||||+-+- +++|+.+.+ ...++|.|++-+++....+|++|.+
T Consensus 307 pf~vdF~rG~prynPgE~s~vdlL~~k~vDAalvi~sDp~----ah~P~~~~~~l~eIPvI~iDp~~~pTt~vadVviP~ 382 (429)
T COG1029 307 PFAVDFSRGYPRYNPGEFSAVDLLKRKEVDAALVIASDPG----AHFPRDAVEHLAEIPVICIDPHPTPTTEVADVVIPS 382 (429)
T ss_pred ceeeecccCCcCCCcccccHHHHHhccCCCeEEEEecCcc----ccChHHHHHHhhcCCEEEecCCCCcchhhcceeccc
Confidence 45566666655321 12344444 37899999998653 444444322 3679999999988877777766543
No 269
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=29.74 E-value=1.2e+02 Score=27.55 Aligned_cols=24 Identities=8% Similarity=0.048 Sum_probs=20.6
Q ss_pred CCcchHHHHhcCCcEEEEECCccc
Q 016025 104 ADPPSIEDINQFAKLIVLTGAGIS 127 (396)
Q Consensus 104 ~~~~~~~~i~~ak~IVvlTGAGIS 127 (396)
++..+.+.|++|++.+|+.|.|+.
T Consensus 16 ~p~~aa~lLk~AKRPvIivG~ga~ 39 (162)
T TIGR00315 16 SPKLVAMMIKRAKRPLLIVGPENL 39 (162)
T ss_pred CHHHHHHHHHcCCCcEEEECCCcC
Confidence 566778999999999999999875
No 270
>PRK14715 DNA polymerase II large subunit; Provisional
Probab=29.43 E-value=45 Score=39.69 Aligned_cols=36 Identities=22% Similarity=0.173 Sum_probs=20.2
Q ss_pred CcCCCCCCcccCcEEEcCCCCCHHHHHHHHHHHhhC
Q 016025 292 PTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKEC 327 (396)
Q Consensus 292 P~Cp~Cgg~LRP~VVlFGE~lp~~~~~~a~~~~~~a 327 (396)
.+||.||+.....-.---+--..+.+.+|.+.+..-
T Consensus 687 ~~Cp~CG~~~~~~~~~~~~i~~~~~~~~A~~~v~~~ 722 (1627)
T PRK14715 687 HVCPFCGTRVELKPYARREIPPKDYWYAALENLKIN 722 (1627)
T ss_pred ccCcccCCcccCCCccceecCHHHHHHHHHHHhCCC
Confidence 579999986333222111112345677888877543
No 271
>PF13289 SIR2_2: SIR2-like domain
Probab=29.11 E-value=27 Score=29.49 Aligned_cols=14 Identities=43% Similarity=0.553 Sum_probs=12.5
Q ss_pred eeeecCccchHhhh
Q 016025 198 CMITQNVDRLHHRA 211 (396)
Q Consensus 198 ~VITQNIDgLh~kA 211 (396)
.|||.|.|.|.++|
T Consensus 2 ~iiTtNyD~llE~a 15 (143)
T PF13289_consen 2 TIITTNYDDLLEKA 15 (143)
T ss_pred EEEECCHhHHHHHH
Confidence 58999999999876
No 272
>PRK00945 acetyl-CoA decarbonylase/synthase complex subunit epsilon; Provisional
Probab=28.77 E-value=46 Score=30.56 Aligned_cols=13 Identities=15% Similarity=0.404 Sum_probs=7.9
Q ss_pred hhCCeEEEEccCc
Q 016025 325 KECDAFLVLGSSL 337 (396)
Q Consensus 325 ~~aDllLVvGTSl 337 (396)
.++|++|++|+.+
T Consensus 107 ~~~DlvlfvG~~~ 119 (171)
T PRK00945 107 GNYDLVIFIGVTY 119 (171)
T ss_pred CCcCEEEEecCCc
Confidence 3566666666655
No 273
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=28.66 E-value=1.4e+02 Score=24.48 Aligned_cols=83 Identities=18% Similarity=0.166 Sum_probs=44.5
Q ss_pred cEEEcCCCCCHHHHHHHHHHHhhCCeEEEEccCcchhhHHHHHHHHHHCC---CeEEEEcCCCCCCC--CcccEEEeCcH
Q 016025 304 DVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAG---STIAIVNVGETRAD--DLTTLKISARL 378 (396)
Q Consensus 304 ~VVlFGE~lp~~~~~~a~~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g---~~lIiIN~~~t~~d--~~a~l~I~~~a 378 (396)
.+++.+...+.+.+..+... .+.|++.+=.+........+.....++.. .+++.-....+..+ ...|+.+.|..
T Consensus 29 ~v~~l~~~~~~~~~~~~i~~-~~pdiV~iS~~~~~~~~~~~~~~~~~~~~p~~~~ivvGG~~~t~~~~~~~~d~~~~Ge~ 107 (125)
T cd02065 29 EVIDLGVDVPPEEIVEAAKE-EDADVVGLSALSTTHMEAMKLVIEALKELGIDIPVVVGGAHPTADPEEPKVDAVVIGEG 107 (125)
T ss_pred EEEEcCCCCCHHHHHHHHHH-cCCCEEEEecchHhHHHHHHHHHHHHHhcCCCCeEEEeCCcCCccccccccceeeeCCe
Confidence 46667777776544433333 57787665444444344555554444322 34443333333221 24677888877
Q ss_pred HHHHHHHHH
Q 016025 379 GEILPRVLD 387 (396)
Q Consensus 379 ~evL~~L~~ 387 (396)
...++++++
T Consensus 108 e~~~~~l~~ 116 (125)
T cd02065 108 EYAGPALLE 116 (125)
T ss_pred EEEccccch
Confidence 777777654
No 274
>PLN02821 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase
Probab=28.41 E-value=1.2e+02 Score=32.16 Aligned_cols=57 Identities=21% Similarity=0.256 Sum_probs=37.7
Q ss_pred CcEEEcCCCCC--HHHHHHHHHHH-hhCCeEEEEcc--CcchhhHHHHHHHHHHCCCeEEEEcCC
Q 016025 303 PDVVFFGDNVP--KDRADKAMEAA-KECDAFLVLGS--SLMTMSAYRLVRAAHEAGSTIAIVNVG 362 (396)
Q Consensus 303 P~VVlFGE~lp--~~~~~~a~~~~-~~aDllLVvGT--Sl~V~pa~~Lv~~a~~~g~~lIiIN~~ 362 (396)
++++.|+.-=. .++.+.+.+.+ +++|++||||- |-++ .+|.+.+.+.|.+.+.|+..
T Consensus 336 ~~~~vfnTIC~ATqeRQdA~~~L~~~~vDlmiVVGG~NSSNT---~~L~eIa~~~g~~sy~Ie~~ 397 (460)
T PLN02821 336 DHFMSFNTICDATQERQDAMYKLVEEKLDLMLVVGGWNSSNT---SHLQEIAEHKGIPSYWIDSE 397 (460)
T ss_pred ccccccCCcchhHHHHHHHHHHHhhcCCCEEEEECCCCCccH---HHHHHHHHHhCCCEEEECCH
Confidence 66777755322 23444455554 58999999994 3333 57777787778888888754
No 275
>PF10263 SprT-like: SprT-like family; InterPro: IPR006640 This is a family of uncharacterised bacterial proteins which includes Escherichia coli SprT (P39902 from SWISSPROT). SprT is described as a regulator of bolA gene in stationary phase []. The majority of members contain the metallopeptidase zinc binding signature which has a HExxH motif, however there is no evidence for them being metallopeptidases.
Probab=28.20 E-value=32 Score=30.10 Aligned_cols=16 Identities=31% Similarity=0.727 Sum_probs=11.9
Q ss_pred ccceeeeCCCCcccch
Q 016025 221 TVYTVVCLDCGFSFCR 236 (396)
Q Consensus 221 sl~~~~C~~C~~~~~~ 236 (396)
.-+...|..|+..+.+
T Consensus 120 ~~~~~~C~~C~~~~~r 135 (157)
T PF10263_consen 120 KKYVYRCPSCGREYKR 135 (157)
T ss_pred cceEEEcCCCCCEeee
Confidence 4567899999987644
No 276
>TIGR00354 polC DNA polymerase, archaeal type II, large subunit. This model represents the large subunit, DP2, of a two subunit novel Archaeal replicative DNA polymerase first characterized for Pyrococcus furiosus. Structure of DP2 appears to be organized as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit.
Probab=28.12 E-value=51 Score=37.88 Aligned_cols=36 Identities=14% Similarity=0.181 Sum_probs=21.3
Q ss_pred CcCCCCCCcccCcEEEcCCCCC-HHHHHHHHHHHhhCC
Q 016025 292 PTCQKCNGVLKPDVVFFGDNVP-KDRADKAMEAAKECD 328 (396)
Q Consensus 292 P~Cp~Cgg~LRP~VVlFGE~lp-~~~~~~a~~~~~~aD 328 (396)
.+||.||+...|.-... -.++ .+.+.+|.+.+..-+
T Consensus 638 ~rCP~CG~~Te~~~pc~-~~i~l~~~~~~A~~~lg~~~ 674 (1095)
T TIGR00354 638 LKCPVCGELTEQLYYGK-RKVDLRELYEEAIANLGEYK 674 (1095)
T ss_pred ccCCCCCCcccccccee-EEecHHHHHHHHHHHhCCCC
Confidence 57999998755443331 1233 346777877775433
No 277
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=27.78 E-value=38 Score=29.00 Aligned_cols=15 Identities=27% Similarity=0.603 Sum_probs=11.0
Q ss_pred cCCCCCCcccCcEEE
Q 016025 293 TCQKCNGVLKPDVVF 307 (396)
Q Consensus 293 ~Cp~Cgg~LRP~VVl 307 (396)
.|..|+.+|--|--+
T Consensus 87 ~CM~C~~pLTLd~~l 101 (114)
T PF11023_consen 87 ACMHCKEPLTLDPSL 101 (114)
T ss_pred ccCcCCCcCccCchh
Confidence 699999987655444
No 278
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=27.40 E-value=64 Score=26.61 Aligned_cols=52 Identities=19% Similarity=0.229 Sum_probs=34.5
Q ss_pred cCCCCHHHHHHHHHHHhCCCceeeecCccchHhhhCCCceeec--cccceeeeCCCCcccch
Q 016025 177 AAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNPLELH--GTVYTVVCLDCGFSFCR 236 (396)
Q Consensus 177 ~a~Pn~~H~aLa~Le~~g~l~~VITQNIDgLh~kAG~~~iElH--Gsl~~~~C~~C~~~~~~ 236 (396)
...+...|+.|..|++.|.+..+-..| + ...+++. ..-..++|.+|++.++.
T Consensus 32 ~i~~~TVYR~L~~L~~~Gli~~~~~~~--~------~~~y~~~~~~~h~H~~C~~Cg~i~~~ 85 (116)
T cd07153 32 SISLATVYRTLELLEEAGLVREIELGD--G------KARYELNTDEHHHHLICTKCGKVIDF 85 (116)
T ss_pred CCCHHHHHHHHHHHHhCCCEEEEEeCC--C------ceEEEeCCCCCCCceEeCCCCCEEEe
Confidence 456778899999999999887654433 1 0113321 22346899999998764
No 279
>PRK12474 hypothetical protein; Provisional
Probab=27.32 E-value=79 Score=33.56 Aligned_cols=57 Identities=12% Similarity=0.157 Sum_probs=32.1
Q ss_pred HHHHHhhCCeEEEEccCcchhhHHHHHH---HHHHCCCeEEEEcCCCCCCCCcccEEEeCcHHHHHHHHHHhC
Q 016025 320 AMEAAKECDAFLVLGSSLMTMSAYRLVR---AAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVLDVG 389 (396)
Q Consensus 320 a~~~~~~aDllLVvGTSl~V~pa~~Lv~---~a~~~g~~lIiIN~~~t~~d~~a~l~I~~~a~evL~~L~~~~ 389 (396)
+.+.+++||++|+||+.+... ...... .......+++.++. ..+|+.++|..|++.+
T Consensus 260 ~~~~~~~aDlvl~lG~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~------------~~~d~~~~l~~L~~~l 319 (518)
T PRK12474 260 ITAFLKDVEQLVLVGAKPPVS-FFAYPGKPSWGAPPGCEIVYLAQ------------PDEDLAQALQDLADAV 319 (518)
T ss_pred HHHHHhhCCEEEEECCCCCcc-ccccCCCccccCCCCCEEEEECC------------CCcCHHHHHHHHHHhc
Confidence 446788999999999986321 000000 00011334444442 1268888888887754
No 280
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=27.14 E-value=1.1e+02 Score=25.20 Aligned_cols=35 Identities=23% Similarity=0.247 Sum_probs=25.7
Q ss_pred hCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCC
Q 016025 326 ECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGE 363 (396)
Q Consensus 326 ~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~~ 363 (396)
..|+++..+.+ .++..+...+.++|..+|..|.+.
T Consensus 59 ~~dvvVE~t~~---~~~~~~~~~~L~~G~~VVt~nk~a 93 (117)
T PF03447_consen 59 DIDVVVECTSS---EAVAEYYEKALERGKHVVTANKGA 93 (117)
T ss_dssp T-SEEEE-SSC---HHHHHHHHHHHHTTCEEEES-HHH
T ss_pred CCCEEEECCCc---hHHHHHHHHHHHCCCeEEEECHHH
Confidence 69999999544 566788888889999999999754
No 281
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=26.90 E-value=28 Score=29.24 Aligned_cols=14 Identities=29% Similarity=0.612 Sum_probs=9.3
Q ss_pred CcEEEEECCccccc
Q 016025 116 AKLIVLTGAGISTE 129 (396)
Q Consensus 116 k~IVvlTGAGISaa 129 (396)
++|+++.|+|+|++
T Consensus 2 kkILlvCg~G~STS 15 (104)
T PRK09590 2 KKALIICAAGMSSS 15 (104)
T ss_pred cEEEEECCCchHHH
Confidence 45777777777654
No 282
>PF14169 YdjO: Cold-inducible protein YdjO
Probab=26.84 E-value=40 Score=25.61 Aligned_cols=18 Identities=17% Similarity=0.493 Sum_probs=14.9
Q ss_pred CCCcCCCCCCcccCcEEE
Q 016025 290 HIPTCQKCNGVLKPDVVF 307 (396)
Q Consensus 290 ~iP~Cp~Cgg~LRP~VVl 307 (396)
..|.||-|++.|...+.+
T Consensus 38 ~~p~CPlC~s~M~~~~r~ 55 (59)
T PF14169_consen 38 EEPVCPLCKSPMVSGTRM 55 (59)
T ss_pred CCccCCCcCCccccceee
Confidence 359999999999887764
No 283
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=26.79 E-value=76 Score=29.16 Aligned_cols=35 Identities=23% Similarity=0.369 Sum_probs=17.9
Q ss_pred hCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCCC
Q 016025 326 ECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGET 364 (396)
Q Consensus 326 ~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~~t 364 (396)
+.|++|+++|-+ .| .|+..++++|.++++||-.-+
T Consensus 95 ~P~~~i~~EtEl--WP--nll~~a~~~~ip~~LvNarls 129 (186)
T PF04413_consen 95 RPDLLIWVETEL--WP--NLLREAKRRGIPVVLVNARLS 129 (186)
T ss_dssp --SEEEEES------H--HHHHH-----S-EEEEEE---
T ss_pred CCCEEEEEcccc--CH--HHHHHHhhcCCCEEEEeeeec
Confidence 459999999977 44 788889999999999995543
No 284
>PF02150 RNA_POL_M_15KD: RNA polymerases M/15 Kd subunit; InterPro: IPR001529 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. In archaebacteria, there is generally a single form of RNA polymerase which also consist of an oligomeric assemblage of 10 to 13 polypeptides. It has recently been shown [], [] that small subunits of about 15 kDa, found in polymerase types I and II, are highly conserved. These proteins contain a probable zinc finger in their N-terminal region and a C-terminal zinc ribbon domain (see IPR001222 from INTERPRO).; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3H0G_I 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I ....
Probab=26.50 E-value=23 Score=23.74 Aligned_cols=12 Identities=33% Similarity=0.955 Sum_probs=10.1
Q ss_pred cCCCCCCcccCc
Q 016025 293 TCQKCNGVLKPD 304 (396)
Q Consensus 293 ~Cp~Cgg~LRP~ 304 (396)
.||.||..|.|.
T Consensus 3 FCp~C~nlL~p~ 14 (35)
T PF02150_consen 3 FCPECGNLLYPK 14 (35)
T ss_dssp BETTTTSBEEEE
T ss_pred eCCCCCccceEc
Confidence 499999998774
No 285
>PRK00415 rps27e 30S ribosomal protein S27e; Reviewed
Probab=26.48 E-value=43 Score=25.44 Aligned_cols=16 Identities=31% Similarity=0.615 Sum_probs=12.2
Q ss_pred eccccceeeeCCCCcc
Q 016025 218 LHGTVYTVVCLDCGFS 233 (396)
Q Consensus 218 lHGsl~~~~C~~C~~~ 233 (396)
..+.+.+++|..|+..
T Consensus 5 p~S~F~~VkCp~C~n~ 20 (59)
T PRK00415 5 PRSRFLKVKCPDCGNE 20 (59)
T ss_pred CCCeEEEEECCCCCCe
Confidence 4566778899999965
No 286
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=26.23 E-value=48 Score=30.11 Aligned_cols=57 Identities=11% Similarity=0.043 Sum_probs=32.3
Q ss_pred hhCCeEEEEccCcchhhHHHHHHHHH-HCCCeEEEEcCCCCCCCCcccEEE-eCcHHHHHHHHH
Q 016025 325 KECDAFLVLGSSLMTMSAYRLVRAAH-EAGSTIAIVNVGETRADDLTTLKI-SARLGEILPRVL 386 (396)
Q Consensus 325 ~~aDllLVvGTSl~V~pa~~Lv~~a~-~~g~~lIiIN~~~t~~d~~a~l~I-~~~a~evL~~L~ 386 (396)
.++|++|.+|+.+ |-+.++...-+ ....+.|-++. .+...+++.+ +-.=++.+..|-
T Consensus 99 g~~DlvlfvG~~~--y~~~~~ls~lk~f~~~~~i~l~~---~y~pnA~~Sf~n~~~~~~~~~l~ 157 (162)
T TIGR00315 99 GNYDLVLFLGIIY--YYLSQMLSSLKHFSHIVTIAIDK---YYQPNADYSFPNLSKDEYLDYLR 157 (162)
T ss_pred CCcCEEEEeCCcc--hHHHHHHHHHHhhcCcEEEEecC---CCCCCCceeccccCHHHHHHHHH
Confidence 6899999999999 55555554433 22455555552 2345556654 111344544443
No 287
>PF01396 zf-C4_Topoisom: Topoisomerase DNA binding C4 zinc finger; InterPro: IPR013498 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks []. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis [, ]. DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA []. Type I topoisomerases are ATP-independent enzymes (except for reverse gyrase), and can be subdivided according to their structure and reaction mechanisms: type IA (bacterial and archaeal topoisomerase I, topoisomerase III and reverse gyrase) and type IB (eukaryotic topoisomerase I and topoisomerase V). These enzymes are primarily responsible for relaxing positively and/or negatively supercoiled DNA, except for reverse gyrase, which can introduce positive supercoils into DNA. This entry represents the zinc-finger domain found in type IA topoisomerases, including bacterial and archaeal topoisomerase I and III enzymes, and in eukaryotic topoisomerase III enzymes. Escherichia coli topoisomerase I proteins contain five copies of a zinc-ribbon-like domain at their C terminus, two of which have lost their cysteine residues and are therefore probably not able to bind zinc []. This domain is still considered to be a member of the zinc-ribbon superfamily despite not being able to bind zinc. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0003677 DNA binding, 0003916 DNA topoisomerase activity, 0006265 DNA topological change, 0005694 chromosome
Probab=26.07 E-value=30 Score=23.71 Aligned_cols=12 Identities=42% Similarity=0.861 Sum_probs=8.9
Q ss_pred cCCCCCCcccCc
Q 016025 293 TCQKCNGVLKPD 304 (396)
Q Consensus 293 ~Cp~Cgg~LRP~ 304 (396)
.||.||+.|.--
T Consensus 3 ~CP~Cg~~lv~r 14 (39)
T PF01396_consen 3 KCPKCGGPLVLR 14 (39)
T ss_pred CCCCCCceeEEE
Confidence 599999876543
No 288
>PRK05978 hypothetical protein; Provisional
Probab=26.02 E-value=37 Score=30.49 Aligned_cols=16 Identities=13% Similarity=0.432 Sum_probs=11.6
Q ss_pred CCcCCCCCCcccCcEE
Q 016025 291 IPTCQKCNGVLKPDVV 306 (396)
Q Consensus 291 iP~Cp~Cgg~LRP~VV 306 (396)
.++|+.||-.+...--
T Consensus 52 ~~~C~~CG~~~~~~~a 67 (148)
T PRK05978 52 VDHCAACGEDFTHHRA 67 (148)
T ss_pred CCCccccCCccccCCc
Confidence 4689999987665543
No 289
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=25.88 E-value=3.9e+02 Score=22.35 Aligned_cols=35 Identities=29% Similarity=0.321 Sum_probs=23.0
Q ss_pred EEEEccCcchhh-HHHHHHHHHHCCCeEEEEcCCCC
Q 016025 330 FLVLGSSLMTMS-AYRLVRAAHEAGSTIAIVNVGET 364 (396)
Q Consensus 330 lLVvGTSl~V~p-a~~Lv~~a~~~g~~lIiIN~~~t 364 (396)
+-|+|.|.+-.. ...++...+++|.+++-||+...
T Consensus 3 iAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~ 38 (116)
T PF13380_consen 3 IAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGG 38 (116)
T ss_dssp EEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCS
T ss_pred EEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCce
Confidence 568998887543 45555666667889999998753
No 290
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=25.09 E-value=33 Score=32.39 Aligned_cols=14 Identities=29% Similarity=0.691 Sum_probs=11.3
Q ss_pred eeeeCCCCcccchh
Q 016025 224 TVVCLDCGFSFCRD 237 (396)
Q Consensus 224 ~~~C~~C~~~~~~~ 237 (396)
...|+.|++.+...
T Consensus 5 ~~~CPvC~~~F~~~ 18 (214)
T PF09986_consen 5 KITCPVCGKEFKTK 18 (214)
T ss_pred ceECCCCCCeeeee
Confidence 47899999988654
No 291
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=24.84 E-value=34 Score=26.83 Aligned_cols=13 Identities=46% Similarity=0.894 Sum_probs=8.3
Q ss_pred cEEEEECCccccc
Q 016025 117 KLIVLTGAGISTE 129 (396)
Q Consensus 117 ~IVvlTGAGISaa 129 (396)
+|++..|+|+|++
T Consensus 1 kIlvvC~~Gi~TS 13 (90)
T PF02302_consen 1 KILVVCGSGIGTS 13 (90)
T ss_dssp EEEEEESSSSHHH
T ss_pred CEEEECCChHHHH
Confidence 3666677776655
No 292
>PRK02935 hypothetical protein; Provisional
Probab=24.62 E-value=51 Score=27.92 Aligned_cols=18 Identities=33% Similarity=0.588 Sum_probs=12.8
Q ss_pred CcCCCCCCcccCcEEEcC
Q 016025 292 PTCQKCNGVLKPDVVFFG 309 (396)
Q Consensus 292 P~Cp~Cgg~LRP~VVlFG 309 (396)
-.|..|+.+|.-|--+-|
T Consensus 87 D~CM~C~~PLTLd~~leg 104 (110)
T PRK02935 87 DACMHCNQPLTLDRSLEG 104 (110)
T ss_pred eecCcCCCcCCcCccccc
Confidence 369999998876655433
No 293
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=24.55 E-value=70 Score=37.23 Aligned_cols=39 Identities=28% Similarity=0.498 Sum_probs=23.6
Q ss_pred CcCCCCCCcccCcEEEcCCCCCHHHHHHHHHHHhhCCeEEEEccCcch
Q 016025 292 PTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSLMT 339 (396)
Q Consensus 292 P~Cp~Cgg~LRP~VVlFGE~lp~~~~~~a~~~~~~aDllLVvGTSl~V 339 (396)
+.||+||+. +|. + -.+..+...+...++|-++ |||-=-+
T Consensus 709 ~~cP~Cgs~---~v~---d--~~~~ve~lRelA~EvDeVl-IgTDPDt 747 (1187)
T COG1110 709 DKCPRCGSR---NVE---D--KTETVEALRELALEVDEIL-IGTDPDT 747 (1187)
T ss_pred ccCCCCCCc---ccc---c--cHHHHHHHHHHHhhcCEEE-EcCCCCC
Confidence 479999974 221 1 1223455566667899764 6776555
No 294
>PRK04351 hypothetical protein; Provisional
Probab=24.50 E-value=58 Score=29.14 Aligned_cols=18 Identities=28% Similarity=0.665 Sum_probs=13.4
Q ss_pred ccccceeeeCCCCcccch
Q 016025 219 HGTVYTVVCLDCGFSFCR 236 (396)
Q Consensus 219 HGsl~~~~C~~C~~~~~~ 236 (396)
.+.-+..+|.+|+..+.+
T Consensus 107 ~~~~y~Y~C~~Cg~~~~r 124 (149)
T PRK04351 107 QKKNYLYECQSCGQQYLR 124 (149)
T ss_pred CCceEEEECCCCCCEeee
Confidence 455577899999987643
No 295
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=24.34 E-value=1e+02 Score=30.93 Aligned_cols=40 Identities=23% Similarity=0.179 Sum_probs=32.4
Q ss_pred hhCCeEEEEcc--CcchhhHHHHHHHHHHCCCeEEEEcCCCC
Q 016025 325 KECDAFLVLGS--SLMTMSAYRLVRAAHEAGSTIAIVNVGET 364 (396)
Q Consensus 325 ~~aDllLVvGT--Sl~V~pa~~Lv~~a~~~g~~lIiIN~~~t 364 (396)
++.-.+||||- |..+.-..+|..+.++.+.+.+.||++|.
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPA 58 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPA 58 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHH
Confidence 44557888884 66777788999998888999999999985
No 296
>PRK11823 DNA repair protein RadA; Provisional
Probab=24.31 E-value=45 Score=35.02 Aligned_cols=39 Identities=15% Similarity=0.142 Sum_probs=23.2
Q ss_pred hCCeEEEEccC--cchhhHHHHHHHHHHCCCeEEEEcCCCC
Q 016025 326 ECDAFLVLGSS--LMTMSAYRLVRAAHEAGSTIAIVNVGET 364 (396)
Q Consensus 326 ~aDllLVvGTS--l~V~pa~~Lv~~a~~~g~~lIiIN~~~t 364 (396)
.-.++++.|.+ .++.-+.++.....++|.+++.|..+++
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees 119 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEES 119 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcccc
Confidence 45577888764 3344455555544455677777776543
No 297
>COG1933 Archaeal DNA polymerase II, large subunit [DNA replication, recombination, and repair]
Probab=24.03 E-value=34 Score=33.09 Aligned_cols=42 Identities=7% Similarity=-0.165 Sum_probs=22.1
Q ss_pred CCCceeeecCccchH-----hhhCCCc--eeecccccee-----eeCCCCcccc
Q 016025 194 GRIDCMITQNVDRLH-----HRAGSNP--LELHGTVYTV-----VCLDCGFSFC 235 (396)
Q Consensus 194 g~l~~VITQNIDgLh-----~kAG~~~--iElHGsl~~~-----~C~~C~~~~~ 235 (396)
|.-+...|.+||-=- ...|.-. ++.+|++... .|..|...+.
T Consensus 96 g~~~thdt~~I~~g~~~~~yktl~~m~ek~~~ql~La~~iRavd~~dva~~v~~ 149 (253)
T COG1933 96 GLKFTHDTDDIALGPKMSLYKQLGDMEEKVKRQLDLARRIRAVDEHDVAERVLN 149 (253)
T ss_pred cccccccccchhccchHHHHHHHhhHHHHHHHHhhHHHHHHHHHhHHHHHHhhc
Confidence 455667888887321 1112211 7777777653 3445554443
No 298
>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.
Probab=24.01 E-value=29 Score=23.32 Aligned_cols=14 Identities=29% Similarity=0.776 Sum_probs=6.3
Q ss_pred cCCCCCCcccCcEE
Q 016025 293 TCQKCNGVLKPDVV 306 (396)
Q Consensus 293 ~Cp~Cgg~LRP~VV 306 (396)
.||.||++|.-.|.
T Consensus 2 fC~~CG~~l~~~ip 15 (34)
T PF14803_consen 2 FCPQCGGPLERRIP 15 (34)
T ss_dssp B-TTT--B-EEE--
T ss_pred ccccccChhhhhcC
Confidence 49999999876655
No 299
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=23.65 E-value=2.7e+02 Score=26.03 Aligned_cols=66 Identities=23% Similarity=0.258 Sum_probs=42.7
Q ss_pred HHHHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCCCC------------CCCcccEEEeCcHHHHHHHHHHh
Q 016025 321 MEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETR------------ADDLTTLKISARLGEILPRVLDV 388 (396)
Q Consensus 321 ~~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~~t~------------~d~~a~l~I~~~a~evL~~L~~~ 388 (396)
.-.+.++-.+|+|||..- |.+..+.+.. ..+++++.|...+.. +++.. -.+.+++.++|++|.+.
T Consensus 40 l~~~~~~k~vLEIGt~~G-ySal~la~~l-~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I-~~~~gda~~~l~~l~~~ 116 (205)
T PF01596_consen 40 LVRLTRPKRVLEIGTFTG-YSALWLAEAL-PEDGKITTIEIDPERAEIARENFRKAGLDDRI-EVIEGDALEVLPELAND 116 (205)
T ss_dssp HHHHHT-SEEEEESTTTS-HHHHHHHHTS-TTTSEEEEEESSHHHHHHHHHHHHHTTGGGGE-EEEES-HHHHHHHHHHT
T ss_pred HHHhcCCceEEEeccccc-cHHHHHHHhh-cccceEEEecCcHHHHHHHHHHHHhcCCCCcE-EEEEeccHhhHHHHHhc
Confidence 334568899999999874 5555555432 347789988877532 12222 24779999999999764
Q ss_pred C
Q 016025 389 G 389 (396)
Q Consensus 389 ~ 389 (396)
.
T Consensus 117 ~ 117 (205)
T PF01596_consen 117 G 117 (205)
T ss_dssp T
T ss_pred c
Confidence 3
No 300
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=23.49 E-value=49 Score=32.50 Aligned_cols=20 Identities=25% Similarity=0.391 Sum_probs=12.2
Q ss_pred eeeccc----cceeeeCCCCcccc
Q 016025 216 LELHGT----VYTVVCLDCGFSFC 235 (396)
Q Consensus 216 iElHGs----l~~~~C~~C~~~~~ 235 (396)
-.++|. ..+++|+-|+..+.
T Consensus 185 s~l~~~~~~G~R~L~Cs~C~t~W~ 208 (290)
T PF04216_consen 185 SVLRGGEREGKRYLHCSLCGTEWR 208 (290)
T ss_dssp EEEE------EEEEEETTT--EEE
T ss_pred EEEecCCCCccEEEEcCCCCCeee
Confidence 555554 58899999998764
No 301
>cd02756 MopB_Arsenite-Ox Arsenite oxidase (Arsenite-Ox) oxidizes arsenite to the less toxic arsenate; it transfers the electrons obtained from the oxidation of arsenite towards the soluble periplasmic electron carriers cytochrome c and/or amicyanin. Arsenite oxidase is a heterodimeric enzyme containing a large and a small subunit. The large catalytic subunit harbors the molybdopterin cofactor and the [3Fe-4S] cluster; and the small subunit belongs to the structural class of the Rieske proteins. The small subunit is not included in this alignment. Members of MopB_Arsenite-Ox CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=23.39 E-value=1.4e+02 Score=33.26 Aligned_cols=51 Identities=20% Similarity=0.297 Sum_probs=33.2
Q ss_pred HHHHhhCCeEEEEccCcc-hhhHH---HHHH-----------HHHHCC-----CeEEEEcCCCCCCCCccc
Q 016025 321 MEAAKECDAFLVLGSSLM-TMSAY---RLVR-----------AAHEAG-----STIAIVNVGETRADDLTT 371 (396)
Q Consensus 321 ~~~~~~aDllLVvGTSl~-V~pa~---~Lv~-----------~a~~~g-----~~lIiIN~~~t~~d~~a~ 371 (396)
.+.++.+|++|++|+... +.|.. +++. .+.++| +++|.|++..|.....++
T Consensus 218 ~~Die~Ad~Il~~G~Np~et~pv~~~~~~~~~l~~~~~~~kk~~~~~G~~~~~~klIVVDPR~T~TA~~Ad 288 (676)
T cd02756 218 YEDARLADTIVLWGNNPYETQTVYFLNHWLPNLRGATVSEKQQWFPPGEPVPPGRIIVVDPRRTETVHAAE 288 (676)
T ss_pred HHHHHhCCEEEEECCChHHhCcchHhhhhhhhhhhHHHHHHHhhhhcCCCCCCCEEEEEeCCCcchhHhhh
Confidence 355789999999998743 34432 2221 011234 599999999987766655
No 302
>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.
Probab=23.32 E-value=35 Score=22.32 Aligned_cols=9 Identities=33% Similarity=1.184 Sum_probs=3.4
Q ss_pred CCcCCCCCC
Q 016025 291 IPTCQKCNG 299 (396)
Q Consensus 291 iP~Cp~Cgg 299 (396)
.|+||.|+.
T Consensus 2 ~p~Cp~C~s 10 (30)
T PF08274_consen 2 LPKCPLCGS 10 (30)
T ss_dssp S---TTT--
T ss_pred CCCCCCCCC
Confidence 588999986
No 303
>PF04810 zf-Sec23_Sec24: Sec23/Sec24 zinc finger; InterPro: IPR006895 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex []. COPII-coated vesicles form on the ER by the stepwise recruitment of three cytosolic components: Sar1-GTP to initiate coat formation, Sec23/24 heterodimer to select SNARE and cargo molecules, and Sec13/31 to induce coat polymerisation and membrane deformation []. Sec23 p and Sec24p are structurally related, folding into five distinct domains: a beta-barrel, a zinc-finger, an alpha/beta trunk domain (IPR006896 from INTERPRO), an all-helical region (IPR006900 from INTERPRO), and a C-terminal gelsolin-like domain (IPR007123 from INTERPRO). This entry describes an approximately 55-residue Sec23/24 zinc-binding domain, which lies against the beta-barrel at the periphery of the complex. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006886 intracellular protein transport, 0006888 ER to Golgi vesicle-mediated transport, 0030127 COPII vesicle coat; PDB: 3EFO_B 3EG9_B 3EGD_A 2YRC_A 2NUP_A 2YRD_A 3EGX_A 2NUT_A 3EH1_A 1PD0_A ....
Probab=22.97 E-value=44 Score=22.94 Aligned_cols=18 Identities=28% Similarity=0.578 Sum_probs=10.7
Q ss_pred CCcCCCCCCcccCcEEEc
Q 016025 291 IPTCQKCNGVLKPDVVFF 308 (396)
Q Consensus 291 iP~Cp~Cgg~LRP~VVlF 308 (396)
+++|.+|++.|-|-+.+-
T Consensus 2 p~rC~~C~aylNp~~~~~ 19 (40)
T PF04810_consen 2 PVRCRRCRAYLNPFCQFD 19 (40)
T ss_dssp S-B-TTT--BS-TTSEEE
T ss_pred ccccCCCCCEECCcceEc
Confidence 578999999999988764
No 304
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=22.92 E-value=41 Score=27.50 Aligned_cols=13 Identities=38% Similarity=0.736 Sum_probs=9.1
Q ss_pred cEEEEECCccccc
Q 016025 117 KLIVLTGAGISTE 129 (396)
Q Consensus 117 ~IVvlTGAGISaa 129 (396)
+|++..|+|+|++
T Consensus 1 kIl~~Cg~G~sTS 13 (96)
T cd05564 1 KILLVCSAGMSTS 13 (96)
T ss_pred CEEEEcCCCchHH
Confidence 3677777777765
No 305
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=22.83 E-value=41 Score=34.54 Aligned_cols=38 Identities=13% Similarity=0.125 Sum_probs=23.5
Q ss_pred hCCeEEEEccCc--chhhHHHHHHHHHHCCCeEEEEcCCC
Q 016025 326 ECDAFLVLGSSL--MTMSAYRLVRAAHEAGSTIAIVNVGE 363 (396)
Q Consensus 326 ~aDllLVvGTSl--~V~pa~~Lv~~a~~~g~~lIiIN~~~ 363 (396)
.-.++++.|.+. ++.-+.++.....+.|.+++.|..++
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EE 120 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEE 120 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCc
Confidence 456888888643 34445555555445567787777654
No 306
>PRK00448 polC DNA polymerase III PolC; Validated
Probab=22.63 E-value=52 Score=39.78 Aligned_cols=12 Identities=50% Similarity=0.969 Sum_probs=9.6
Q ss_pred cCCCCCCcccCc
Q 016025 293 TCQKCNGVLKPD 304 (396)
Q Consensus 293 ~Cp~Cgg~LRP~ 304 (396)
.||+||..|.-+
T Consensus 935 ~Cp~Cg~~~~kd 946 (1437)
T PRK00448 935 DCPKCGTKLKKD 946 (1437)
T ss_pred cCcccccccccc
Confidence 599999877654
No 307
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=22.51 E-value=47 Score=35.00 Aligned_cols=39 Identities=10% Similarity=0.036 Sum_probs=23.9
Q ss_pred hCCeEEEEccCc--chhhHHHHHHHHHHCCCeEEEEcCCCC
Q 016025 326 ECDAFLVLGSSL--MTMSAYRLVRAAHEAGSTIAIVNVGET 364 (396)
Q Consensus 326 ~aDllLVvGTSl--~V~pa~~Lv~~a~~~g~~lIiIN~~~t 364 (396)
.-.++++.|.+. ++.-+.++.....++|.+++.|..+++
T Consensus 93 ~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs 133 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEES 133 (454)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCC
Confidence 456888888643 344455555544455667777776654
No 308
>PRK10996 thioredoxin 2; Provisional
Probab=22.44 E-value=4.8e+02 Score=22.34 Aligned_cols=43 Identities=14% Similarity=0.223 Sum_probs=22.2
Q ss_pred CCcCCCCCCcccCcEEEcCCCCCHHHHHHHHHHHhhCCeEEEEccCcc
Q 016025 291 IPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSLM 338 (396)
Q Consensus 291 iP~Cp~Cgg~LRP~VVlFGE~lp~~~~~~a~~~~~~aDllLVvGTSl~ 338 (396)
-..|+.|+..+-...++. +..+.++.+. -+..-++|.+.++.-
T Consensus 22 ~~~~~~~~~~~~~~~~i~---~~~~~~~~~i--~~~k~vvv~F~a~wC 64 (139)
T PRK10996 22 AAKCGRCGHDLFDGEVIN---ATGETLDKLL--QDDLPVVIDFWAPWC 64 (139)
T ss_pred CCcCCCCCCccCCCCCEE---cCHHHHHHHH--hCCCeEEEEEECCCC
Confidence 357999987665554442 2233344332 123446666666553
No 309
>PF04606 Ogr_Delta: Ogr/Delta-like zinc finger; InterPro: IPR007684 This entry is represented by Bacteriophage P2, Ogr. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a viral family of phage zinc-binding transcriptional activators, which also contains cryptic members in some bacterial genomes []. The P4 phage delta protein contains two such domains attached covalently, while the P2 phage Ogr proteins possess one domain but function as dimers. All the members of this family have the following consensus sequence: C-X(2)-C-X(3)-A-(X)2-R-X(15)-C-X(4)-C-X(3)-F [].; GO: 0006355 regulation of transcription, DNA-dependent
Probab=22.39 E-value=39 Score=24.00 Aligned_cols=10 Identities=20% Similarity=0.793 Sum_probs=7.9
Q ss_pred cCCCCCCccc
Q 016025 293 TCQKCNGVLK 302 (396)
Q Consensus 293 ~Cp~Cgg~LR 302 (396)
+||.||+.++
T Consensus 1 ~CP~Cg~~a~ 10 (47)
T PF04606_consen 1 RCPHCGSKAR 10 (47)
T ss_pred CcCCCCCeeE
Confidence 5999998764
No 310
>TIGR00155 pqiA_fam integral membrane protein, PqiA family. This family consists of uncharacterized predicted integral membrane proteins found, so far, only in the Proteobacteria. Of two members in E. coli, one is induced by paraquat and is designated PqiA, paraquat-inducible protein A.
Probab=22.35 E-value=57 Score=33.92 Aligned_cols=11 Identities=27% Similarity=0.836 Sum_probs=9.0
Q ss_pred CCcCCCCCCcc
Q 016025 291 IPTCQKCNGVL 301 (396)
Q Consensus 291 iP~Cp~Cgg~L 301 (396)
..+||+||..|
T Consensus 33 ~a~CpRCg~~L 43 (403)
T TIGR00155 33 KAACPRCGTTL 43 (403)
T ss_pred eeECCCCCCCC
Confidence 45799999877
No 311
>COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair]
Probab=22.24 E-value=58 Score=38.38 Aligned_cols=12 Identities=50% Similarity=0.966 Sum_probs=9.4
Q ss_pred cCCCCCCcccCc
Q 016025 293 TCQKCNGVLKPD 304 (396)
Q Consensus 293 ~Cp~Cgg~LRP~ 304 (396)
.||+||.+++-|
T Consensus 941 ~CPkCg~pl~kD 952 (1444)
T COG2176 941 DCPKCGTPLKKD 952 (1444)
T ss_pred CCCcCCCccccC
Confidence 599999877644
No 312
>PRK15103 paraquat-inducible membrane protein A; Provisional
Probab=21.86 E-value=50 Score=34.52 Aligned_cols=12 Identities=25% Similarity=0.769 Sum_probs=9.4
Q ss_pred CCcCCCCCCccc
Q 016025 291 IPTCQKCNGVLK 302 (396)
Q Consensus 291 iP~Cp~Cgg~LR 302 (396)
..+||+||..|.
T Consensus 30 ~a~CpRCg~~L~ 41 (419)
T PRK15103 30 KAACPRCGTTLT 41 (419)
T ss_pred eeECCCCCCCCc
Confidence 357999998773
No 313
>KOG3035 consensus Isoamyl acetate-hydrolyzing esterase [Lipid transport and metabolism]
Probab=21.60 E-value=48 Score=31.83 Aligned_cols=16 Identities=38% Similarity=1.041 Sum_probs=13.4
Q ss_pred CcccCcEEEcCCCCCH
Q 016025 299 GVLKPDVVFFGDNVPK 314 (396)
Q Consensus 299 g~LRP~VVlFGE~lp~ 314 (396)
|++||.+++||+++-+
T Consensus 3 g~~rp~i~LFGdSItq 18 (245)
T KOG3035|consen 3 GPMRPRIVLFGDSITQ 18 (245)
T ss_pred CcccccEEEecchhhh
Confidence 3499999999998755
No 314
>COG0498 ThrC Threonine synthase [Amino acid transport and metabolism]
Probab=21.56 E-value=55 Score=34.19 Aligned_cols=57 Identities=11% Similarity=0.037 Sum_probs=31.9
Q ss_pred eEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCC-CCC--------CCcccEEEeCcHHHHH---HHHHH
Q 016025 329 AFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGE-TRA--------DDLTTLKISARLGEIL---PRVLD 387 (396)
Q Consensus 329 llLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~~-t~~--------d~~a~l~I~~~a~evL---~~L~~ 387 (396)
..|+..||.++- +.+-..+.+.|.+++++=+.. ... .....+.|.|+-++.+ .++.+
T Consensus 127 ~~I~~ASSGnTg--As~aaya~rag~~v~Vl~P~g~vs~~k~~q~~~~ga~~i~v~G~fDda~~~vk~~~~ 195 (411)
T COG0498 127 KTILCASSGNTG--ASAAAYAARAGLKVFVLYPKGKVSPGKLAQMLTLGAHVIAVDGNFDDAQELVKEAAN 195 (411)
T ss_pred CEEEEeCCchHH--HHHHHHhccCCCeEEEEecCCCCCHHHHHHHHhcCCEEEEEcCcHHHHHHHHHHHHh
Confidence 556667777766 455555556777777766554 211 1112345777766444 44444
No 315
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=21.49 E-value=2.4e+02 Score=22.72 Aligned_cols=41 Identities=20% Similarity=0.313 Sum_probs=27.9
Q ss_pred HHHHHHhhCCeEEEEccCcchhhHH-HHHHHHHHCCCeEEEEc
Q 016025 319 KAMEAAKECDAFLVLGSSLMTMSAY-RLVRAAHEAGSTIAIVN 360 (396)
Q Consensus 319 ~a~~~~~~aDllLVvGTSl~V~pa~-~Lv~~a~~~g~~lIiIN 360 (396)
.....+.+||++|++ |+..-.-+. ..-..|++.|.+++..+
T Consensus 41 ~l~~~i~~aD~VIv~-t~~vsH~~~~~vk~~akk~~ip~~~~~ 82 (97)
T PF10087_consen 41 RLPSKIKKADLVIVF-TDYVSHNAMWKVKKAAKKYGIPIIYSR 82 (97)
T ss_pred HHHHhcCCCCEEEEE-eCCcChHHHHHHHHHHHHcCCcEEEEC
Confidence 345678899999887 444344433 44445788899988887
No 316
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=21.35 E-value=1e+02 Score=29.45 Aligned_cols=45 Identities=22% Similarity=0.184 Sum_probs=25.1
Q ss_pred EEcc--CcchhhHHHHHHHHHHCCCeEEEEcCCCCCC--CCcccEEEeC
Q 016025 332 VLGS--SLMTMSAYRLVRAAHEAGSTIAIVNVGETRA--DDLTTLKISA 376 (396)
Q Consensus 332 VvGT--Sl~V~pa~~Lv~~a~~~g~~lIiIN~~~t~~--d~~a~l~I~~ 376 (396)
|+|+ |.++.-+..+-+.....|.++++||++|..- +..+++-|++
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDPa~~~~~y~~~iDird 49 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLDPAVENLPYPPDIDIRD 49 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--TT-S--SS--SEEGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcchHhcccccCchHHHHh
Confidence 4665 5556667777777777889999999998642 3344454444
No 317
>PF06676 DUF1178: Protein of unknown function (DUF1178); InterPro: IPR009562 This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown.
Probab=20.77 E-value=1.2e+02 Score=27.21 Aligned_cols=20 Identities=20% Similarity=0.566 Sum_probs=14.8
Q ss_pred CCcCCCCCC------cccCcEEEcCC
Q 016025 291 IPTCQKCNG------VLKPDVVFFGD 310 (396)
Q Consensus 291 iP~Cp~Cgg------~LRP~VVlFGE 310 (396)
.-.||.||+ +|-|.|.-=+.
T Consensus 32 lv~CP~Cgs~~V~K~lmAP~v~~~~~ 57 (148)
T PF06676_consen 32 LVSCPVCGSTEVSKALMAPAVATSRS 57 (148)
T ss_pred CccCCCCCCCeEeeecCCCeecCCCC
Confidence 457999996 68888876443
No 318
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=20.75 E-value=49 Score=24.86 Aligned_cols=11 Identities=36% Similarity=0.890 Sum_probs=8.6
Q ss_pred CcCCCCCCccc
Q 016025 292 PTCQKCNGVLK 302 (396)
Q Consensus 292 P~Cp~Cgg~LR 302 (396)
-.||+|||.|-
T Consensus 42 ~~CPNCgGelv 52 (57)
T PF06906_consen 42 GVCPNCGGELV 52 (57)
T ss_pred CcCcCCCCccc
Confidence 46999999654
No 319
>TIGR03646 YtoQ_fam YtoQ family protein. Members of this family are uncharacterized proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=20.51 E-value=1.9e+02 Score=25.64 Aligned_cols=46 Identities=15% Similarity=0.174 Sum_probs=35.9
Q ss_pred HHHHHHhhCCeEEE-EccCcchhhHHHHHHHHHHCCCeEEEEcCCCC
Q 016025 319 KAMEAAKECDAFLV-LGSSLMTMSAYRLVRAAHEAGSTIAIVNVGET 364 (396)
Q Consensus 319 ~a~~~~~~aDllLV-vGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~~t 364 (396)
+....+++||+++| .|-.....-++-=...|...|.++|++...+.
T Consensus 68 RT~~li~~aDvvVvrFGekYKQWNaAfDAg~aaAlgKplI~lh~~~~ 114 (144)
T TIGR03646 68 RTRKLIEKADVVIALFGEKYKQWNAAFDAGYAAALGKPLIILRPEEL 114 (144)
T ss_pred HHHHHHhhCCEEEEEechHHHHHHHHhhHHHHHHcCCCeEEecchhc
Confidence 45668899998887 58888877776666667778999999987653
No 320
>PF14353 CpXC: CpXC protein
Probab=20.37 E-value=55 Score=27.95 Aligned_cols=19 Identities=32% Similarity=0.892 Sum_probs=16.2
Q ss_pred eeccccceeeeCCCCcccc
Q 016025 217 ELHGTVYTVVCLDCGFSFC 235 (396)
Q Consensus 217 ElHGsl~~~~C~~C~~~~~ 235 (396)
-+-|+++...|+.||+.+.
T Consensus 31 il~g~l~~~~CP~Cg~~~~ 49 (128)
T PF14353_consen 31 ILDGSLFSFTCPSCGHKFR 49 (128)
T ss_pred HHcCCcCEEECCCCCCcee
Confidence 3589999999999998764
No 321
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed
Probab=20.21 E-value=2.1e+02 Score=31.53 Aligned_cols=59 Identities=17% Similarity=0.234 Sum_probs=38.4
Q ss_pred CcEEEcCCCC--CHHHHHHHHHHHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCC
Q 016025 303 PDVVFFGDNV--PKDRADKAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVG 362 (396)
Q Consensus 303 P~VVlFGE~l--p~~~~~~a~~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~ 362 (396)
|++..|++-= -..+.+.+.+...++|++||||..-+ .-..+|.+.|++.|.+.+.|+..
T Consensus 181 ~~~~~~~tiC~at~~Rq~a~~~la~~~d~~~vvGg~~S-sNt~~L~~i~~~~~~~~~~ie~~ 241 (647)
T PRK00087 181 KEVKVFNTICNATEVRQEAAEKLAKKVDVMIVVGGKNS-SNTTKLYEICKSNCTNTIHIENA 241 (647)
T ss_pred CCcccCCCcchhhhhHHHHHHHHHhhCCEEEEECCCCC-ccHHHHHHHHHHHCCCEEEECCh
Confidence 4444454421 12344566777789999999996432 22357877788778888888754
No 322
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=20.14 E-value=37 Score=22.01 Aligned_cols=13 Identities=31% Similarity=0.767 Sum_probs=6.9
Q ss_pred CcCCCCCCcccCc
Q 016025 292 PTCQKCNGVLKPD 304 (396)
Q Consensus 292 P~Cp~Cgg~LRP~ 304 (396)
..|+.||+++.+.
T Consensus 4 rfC~~CG~~t~~~ 16 (32)
T PF09297_consen 4 RFCGRCGAPTKPA 16 (32)
T ss_dssp SB-TTT--BEEE-
T ss_pred cccCcCCccccCC
Confidence 4699999987653
No 323
>PF04475 DUF555: Protein of unknown function (DUF555); InterPro: IPR007564 This is a family of uncharacterised, hypothetical archaeal proteins.
Probab=20.10 E-value=69 Score=26.87 Aligned_cols=19 Identities=26% Similarity=0.513 Sum_probs=14.9
Q ss_pred CcCCCCCCcccCcEEEcCC
Q 016025 292 PTCQKCNGVLKPDVVFFGD 310 (396)
Q Consensus 292 P~Cp~Cgg~LRP~VVlFGE 310 (396)
-.||.||..+.|-.+.-+.
T Consensus 48 ~~cP~Cge~~~~a~vva~t 66 (102)
T PF04475_consen 48 TICPKCGEELDSAFVVADT 66 (102)
T ss_pred ccCCCCCCccCceEEEecc
Confidence 4699999999998775444
No 324
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=20.04 E-value=32 Score=25.87 Aligned_cols=13 Identities=23% Similarity=0.754 Sum_probs=9.9
Q ss_pred CCCcCCCCCCccc
Q 016025 290 HIPTCQKCNGVLK 302 (396)
Q Consensus 290 ~iP~Cp~Cgg~LR 302 (396)
..-+||.||.+.|
T Consensus 16 ~~lrCPRC~~~FR 28 (65)
T COG4049 16 EFLRCPRCGMVFR 28 (65)
T ss_pred eeeeCCchhHHHH
Confidence 4568999997655
Done!