Query 016025
Match_columns 396
No_of_seqs 221 out of 1170
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 06:36:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016025.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016025hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1yc5_A NAD-dependent deacetyla 100.0 8.5E-65 2.9E-69 484.6 23.7 239 107-392 5-246 (246)
2 1ma3_A SIR2-AF2, transcription 100.0 2.3E-63 8E-68 476.6 22.2 234 108-389 8-246 (253)
3 1m2k_A Silent information regu 100.0 7.5E-63 2.6E-67 472.0 21.7 233 107-389 4-240 (249)
4 3riy_A NAD-dependent deacetyla 100.0 1.6E-62 5.4E-67 475.6 21.5 250 107-386 13-272 (273)
5 3u31_A SIR2A, transcriptional 100.0 5.6E-61 1.9E-65 467.7 24.1 235 107-387 37-277 (290)
6 1s5p_A NAD-dependent deacetyla 100.0 3.8E-61 1.3E-65 456.6 17.9 225 115-389 1-230 (235)
7 1q1a_A HST2 protein; ternary c 100.0 7.2E-60 2.5E-64 460.4 20.3 239 107-391 10-279 (289)
8 3k35_A NAD-dependent deacetyla 100.0 2E-60 7E-65 467.2 14.5 236 108-395 37-275 (318)
9 3glr_A NAD-dependent deacetyla 100.0 2.2E-59 7.5E-64 455.1 17.5 235 107-391 13-265 (285)
10 2hjh_A NAD-dependent histone d 100.0 9.8E-59 3.4E-63 463.9 21.4 266 106-395 37-322 (354)
11 3pki_A NAD-dependent deacetyla 100.0 9.4E-60 3.2E-64 466.5 13.2 236 108-395 37-275 (355)
12 4iao_A NAD-dependent histone d 100.0 2.2E-58 7.5E-63 471.6 21.3 266 106-395 175-460 (492)
13 1j8f_A SIRT2, sirtuin 2, isofo 100.0 3.8E-58 1.3E-62 454.3 22.0 237 106-391 32-304 (323)
14 1q14_A HST2 protein; histone d 100.0 2.1E-58 7.2E-63 461.6 18.9 239 108-392 19-288 (361)
15 3lq1_A 2-succinyl-5-enolpyruvy 91.8 0.39 1.3E-05 50.0 8.4 67 322-390 285-353 (578)
16 2iht_A Carboxyethylarginine sy 91.1 0.52 1.8E-05 49.0 8.5 68 320-390 281-351 (573)
17 3hww_A 2-succinyl-5-enolpyruvy 90.1 0.52 1.8E-05 48.8 7.4 66 319-386 271-338 (556)
18 1ozh_A ALS, acetolactate synth 89.9 0.54 1.8E-05 48.8 7.3 66 321-390 269-336 (566)
19 3eya_A Pyruvate dehydrogenase 89.6 0.55 1.9E-05 48.5 7.1 64 320-390 259-324 (549)
20 2x7j_A 2-succinyl-5-enolpyruvy 89.6 0.86 2.9E-05 47.7 8.6 65 322-389 306-372 (604)
21 1ybh_A Acetolactate synthase, 89.4 0.35 1.2E-05 50.5 5.5 68 319-388 271-340 (590)
22 4feg_A Pyruvate oxidase; carba 89.4 0.57 2E-05 49.1 7.0 67 320-390 270-338 (603)
23 2c31_A Oxalyl-COA decarboxylas 88.9 0.24 8.1E-06 51.5 3.7 69 321-389 267-337 (568)
24 2pgn_A Cyclohexane-1,2-dione h 88.1 0.38 1.3E-05 50.2 4.6 67 320-389 265-333 (589)
25 2pan_A Glyoxylate carboligase; 87.5 0.65 2.2E-05 48.7 6.0 67 320-388 287-355 (616)
26 2q28_A Oxalyl-COA decarboxylas 87.4 0.37 1.3E-05 49.9 4.0 67 321-389 265-333 (564)
27 1o97_D Electron transferring f 86.5 1.3 4.5E-05 43.0 7.1 59 327-390 260-319 (320)
28 1v5e_A Pyruvate oxidase; oxido 86.4 1.5 5.3E-05 45.6 8.1 67 319-390 262-331 (590)
29 1t9b_A Acetolactate synthase, 84.4 1.6 5.4E-05 46.6 7.1 70 321-390 351-429 (677)
30 2lcq_A Putative toxin VAPC6; P 83.9 0.44 1.5E-05 41.6 2.1 12 224-235 132-143 (165)
31 2uz1_A Benzaldehyde lyase; thi 80.9 0.57 2E-05 48.5 2.0 65 324-389 267-333 (563)
32 2vpz_A Thiosulfate reductase; 79.6 3 0.0001 44.8 7.2 55 324-378 197-254 (765)
33 1lko_A Rubrerythrin all-iron(I 75.5 1.1 3.6E-05 40.3 1.8 14 222-235 153-166 (191)
34 1q6z_A BFD, BFDC, benzoylforma 75.2 0.58 2E-05 48.0 -0.0 71 319-390 259-330 (528)
35 1efv_A Electron transfer flavo 75.2 4 0.00014 39.4 5.9 60 326-390 253-313 (315)
36 2k5c_A Uncharacterized protein 74.4 2.4 8.3E-05 33.1 3.3 29 291-325 51-79 (95)
37 1h0h_A Formate dehydrogenase ( 74.0 4.6 0.00016 44.8 6.8 56 323-378 181-238 (977)
38 1efp_A ETF, protein (electron 73.5 4.5 0.00015 38.9 5.8 59 326-389 248-307 (307)
39 2ivf_A Ethylbenzene dehydrogen 72.9 3.9 0.00013 45.4 5.9 55 324-378 244-300 (976)
40 2e7z_A Acetylene hydratase AHY 71.6 2.6 8.9E-05 44.9 4.0 52 324-375 158-212 (727)
41 4ayb_P DNA-directed RNA polyme 71.4 2.2 7.5E-05 29.8 2.1 13 224-236 3-15 (48)
42 2iv2_X Formate dehydrogenase H 71.3 3.3 0.00011 44.1 4.7 55 323-377 163-219 (715)
43 1tk9_A Phosphoheptose isomeras 70.9 2.8 9.6E-05 36.2 3.4 56 322-377 106-162 (188)
44 2kdx_A HYPA, hydrogenase/ureas 69.8 2.5 8.4E-05 34.9 2.6 20 216-235 65-84 (119)
45 2wvg_A PDC, pyruvate decarboxy 68.9 2 6.9E-05 44.4 2.3 66 321-390 271-336 (568)
46 2vbi_A Pyruvate decarboxylase; 68.5 2.1 7.2E-05 44.2 2.4 67 320-390 270-336 (566)
47 2nap_A Protein (periplasmic ni 68.5 5.6 0.00019 42.2 5.7 55 324-378 164-222 (723)
48 3a43_A HYPD, hydrogenase nicke 67.9 1.5 5.1E-05 37.5 0.9 22 216-237 62-83 (139)
49 2vk8_A Pyruvate decarboxylase 67.4 1.8 6.2E-05 44.7 1.6 66 319-388 271-336 (563)
50 3trj_A Phosphoheptose isomeras 66.2 13 0.00045 32.9 6.9 55 323-377 111-169 (201)
51 2i2w_A Phosphoheptose isomeras 64.9 16 0.00055 32.3 7.2 57 322-378 127-184 (212)
52 2vbf_A Branched-chain alpha-ke 62.5 1.7 5.9E-05 44.9 0.3 66 320-389 289-354 (570)
53 1yuz_A Nigerythrin; rubrythrin 62.3 3.6 0.00012 37.2 2.3 15 221-235 168-182 (202)
54 1eu1_A Dimethyl sulfoxide redu 61.7 5.1 0.00017 43.1 3.8 53 323-375 174-237 (780)
55 2xbl_A Phosphoheptose isomeras 61.6 8.8 0.0003 33.2 4.7 57 323-379 113-170 (198)
56 3ml1_A NAPA, periplasmic nitra 61.2 7.9 0.00027 42.0 5.2 55 323-377 175-233 (802)
57 3pwf_A Rubrerythrin; non heme 60.8 3.9 0.00013 36.0 2.3 13 223-235 137-149 (170)
58 1ovm_A Indole-3-pyruvate decar 60.5 3.3 0.00011 42.5 2.0 65 319-387 269-333 (552)
59 1kqf_A FDH-N alpha, formate de 60.4 5.9 0.0002 44.1 4.1 55 323-377 219-276 (1015)
60 1q16_A Respiratory nitrate red 59.9 4.8 0.00016 46.0 3.3 55 323-377 243-299 (1247)
61 3i9v_3 NADH-quinone oxidoreduc 59.4 9.9 0.00034 41.1 5.6 57 322-379 388-471 (783)
62 1twf_L ABC10-alpha, DNA-direct 59.4 5.9 0.0002 29.9 2.7 11 224-234 28-38 (70)
63 1ti6_A Pyrogallol hydroxytrans 58.6 5.7 0.0002 43.3 3.6 53 323-375 205-265 (875)
64 4rxn_A Rubredoxin; electron tr 55.8 17 0.00059 26.0 4.5 13 223-235 2-14 (54)
65 3sho_A Transcriptional regulat 54.2 23 0.00079 30.2 6.2 56 321-376 82-138 (187)
66 3szu_A ISPH, 4-hydroxy-3-methy 54.1 27 0.00091 34.0 7.1 73 316-389 215-298 (328)
67 2f62_A Nucleoside 2-deoxyribos 53.4 69 0.0023 27.6 9.0 77 313-390 54-159 (161)
68 3cf4_G Acetyl-COA decarboxylas 51.8 9.9 0.00034 32.9 3.3 61 323-389 104-167 (170)
69 3dnf_A ISPH, LYTB, 4-hydroxy-3 50.3 26 0.00087 33.7 6.2 75 303-378 184-264 (297)
70 2yva_A DNAA initiator-associat 50.1 31 0.0011 29.7 6.4 56 322-377 105-164 (196)
71 1tmo_A TMAO reductase, trimeth 50.0 11 0.00038 40.7 4.1 52 324-375 208-274 (829)
72 1vim_A Hypothetical protein AF 49.8 7.8 0.00027 34.2 2.4 53 324-376 87-140 (200)
73 2gmg_A Hypothetical protein PF 48.9 10 0.00035 30.9 2.7 12 223-234 66-77 (105)
74 6rxn_A Rubredoxin; electron tr 48.5 17 0.00059 25.1 3.4 14 222-235 2-15 (46)
75 1x92_A APC5045, phosphoheptose 47.3 29 0.00098 30.0 5.7 57 322-378 109-169 (199)
76 1e8j_A Rubredoxin; iron-sulfur 46.6 25 0.00085 24.8 4.1 13 223-235 2-14 (52)
77 2kn9_A Rubredoxin; metalloprot 44.5 21 0.00074 27.6 3.8 14 222-235 25-38 (81)
78 2v3b_B Rubredoxin 2, rubredoxi 44.2 21 0.00073 25.5 3.5 13 223-235 2-14 (55)
79 2h1q_A Hypothetical protein; Z 43.6 31 0.001 32.5 5.6 71 320-391 180-257 (270)
80 3na7_A HP0958; flagellar bioge 43.2 9.8 0.00033 35.3 2.0 18 216-237 194-211 (256)
81 1jeo_A MJ1247, hypothetical pr 42.7 31 0.0011 29.2 5.1 52 324-376 80-132 (180)
82 1s24_A Rubredoxin 2; electron 42.1 21 0.00073 28.0 3.5 14 222-235 33-46 (87)
83 1m3s_A Hypothetical protein YC 41.8 28 0.00096 29.7 4.7 51 324-374 77-128 (186)
84 3etn_A Putative phosphosugar i 41.2 22 0.00074 31.8 4.0 54 323-376 103-159 (220)
85 3h0g_L DNA-directed RNA polyme 40.6 18 0.0006 26.8 2.6 11 224-234 21-31 (63)
86 1dx8_A Rubredoxin; electron tr 40.5 32 0.0011 25.8 4.1 15 221-235 4-18 (70)
87 3cvj_A Putative phosphoheptose 40.5 19 0.00063 32.6 3.4 52 324-375 106-169 (243)
88 2nxw_A Phenyl-3-pyruvate decar 39.9 10 0.00034 39.1 1.7 66 320-389 283-348 (565)
89 2xhz_A KDSD, YRBH, arabinose 5 39.1 28 0.00097 29.5 4.3 54 323-376 93-147 (183)
90 2jrp_A Putative cytoplasmic pr 38.8 11 0.00036 29.4 1.2 13 224-236 18-30 (81)
91 3l5o_A Uncharacterized protein 37.7 47 0.0016 31.3 5.8 71 319-390 179-256 (270)
92 1yk4_A Rubredoxin, RD; electro 36.7 30 0.001 24.4 3.3 12 224-235 2-13 (52)
93 2xig_A Ferric uptake regulatio 35.7 22 0.00076 30.0 2.9 53 177-237 58-112 (150)
94 1nri_A Hypothetical protein HI 35.3 23 0.00079 33.5 3.3 54 323-376 137-191 (306)
95 3sho_A Transcriptional regulat 34.0 88 0.003 26.4 6.7 51 311-361 23-73 (187)
96 2gnr_A Conserved hypothetical 33.2 15 0.0005 31.5 1.3 16 219-234 42-57 (145)
97 1ytl_A Acetyl-COA decarboxylas 33.0 19 0.00064 31.7 2.0 36 325-362 107-144 (174)
98 2khz_A C-MYC-responsive protei 32.7 1.8E+02 0.0063 24.6 8.5 49 314-363 65-113 (165)
99 1mzb_A Ferric uptake regulatio 32.7 41 0.0014 27.7 4.1 53 177-237 50-104 (136)
100 2jne_A Hypothetical protein YF 32.0 16 0.00056 29.3 1.3 12 291-302 61-72 (101)
101 1rcu_A Conserved hypothetical 31.8 2.7E+02 0.0092 24.6 9.9 69 318-389 110-193 (195)
102 1e2b_A Enzyme IIB-cellobiose; 30.7 15 0.00051 29.5 0.9 14 116-129 4-17 (106)
103 1m3s_A Hypothetical protein YC 30.1 1.3E+02 0.0045 25.2 7.1 50 311-360 21-70 (186)
104 3irb_A Uncharacterized protein 29.9 18 0.00062 30.7 1.4 13 222-234 45-57 (145)
105 3jx9_A Putative phosphoheptose 29.7 40 0.0014 29.5 3.6 44 323-366 74-118 (170)
106 4hpq_A ATG31, KLTH0C07942P; au 29.6 22 0.00075 26.5 1.6 14 11-24 2-15 (69)
107 3fj1_A Putative phosphosugar i 28.6 37 0.0013 32.7 3.5 54 324-377 89-143 (344)
108 3hba_A Putative phosphosugar i 28.0 75 0.0026 30.4 5.6 53 325-377 89-142 (334)
109 3fxa_A SIS domain protein; str 27.6 37 0.0013 29.4 3.1 53 323-375 89-142 (201)
110 2kre_A Ubiquitin conjugation f 27.5 51 0.0017 25.9 3.6 25 292-321 64-88 (100)
111 4h08_A Putative hydrolase; GDS 27.3 91 0.0031 26.3 5.6 14 302-315 20-33 (200)
112 2fsv_C NAD(P) transhydrogenase 26.9 43 0.0015 30.2 3.2 72 317-389 112-202 (203)
113 3eyy_A Putative iron uptake re 26.5 46 0.0016 27.8 3.4 53 177-237 49-103 (145)
114 3j21_g 50S ribosomal protein L 26.4 41 0.0014 23.7 2.5 14 291-304 28-42 (51)
115 2kr4_A Ubiquitin conjugation f 26.2 64 0.0022 24.3 3.9 19 225-243 27-45 (85)
116 1vim_A Hypothetical protein AF 25.6 1.5E+02 0.0052 25.5 6.8 48 313-360 33-80 (200)
117 3knz_A Putative sugar binding 25.5 55 0.0019 31.8 4.2 54 324-377 95-149 (366)
118 2o03_A Probable zinc uptake re 25.0 58 0.002 26.5 3.7 52 177-236 42-95 (131)
119 2aml_A SIS domain protein; 469 24.6 75 0.0026 30.7 4.9 54 324-377 95-150 (373)
120 1moq_A Glucosamine 6-phosphate 24.6 29 0.001 33.5 2.0 53 324-376 97-151 (368)
121 3eua_A Putative fructose-amino 24.5 35 0.0012 32.6 2.4 53 324-376 72-125 (329)
122 4fyk_A Deoxyribonucleoside 5'- 24.0 1.6E+02 0.0056 25.1 6.4 48 313-361 55-102 (152)
123 2w57_A Ferric uptake regulatio 23.8 58 0.002 27.3 3.5 53 177-237 49-103 (150)
124 1wgm_A Ubiquitin conjugation f 23.4 93 0.0032 24.2 4.4 25 292-321 58-82 (98)
125 3jy6_A Transcriptional regulat 23.3 3.7E+02 0.013 23.4 10.0 35 325-364 62-96 (276)
126 3mwm_A ZUR, putative metal upt 23.3 60 0.002 26.9 3.4 53 177-237 45-100 (139)
127 4ets_A Ferric uptake regulatio 22.7 56 0.0019 27.9 3.2 53 177-237 66-120 (162)
128 1jeo_A MJ1247, hypothetical pr 22.4 1.1E+02 0.0038 25.6 5.1 49 312-360 25-73 (180)
129 3g68_A Putative phosphosugar i 22.2 71 0.0024 30.7 4.2 50 326-375 82-132 (352)
130 3hh1_A Tetrapyrrole methylase 22.1 2.9E+02 0.0099 21.7 7.6 54 306-359 58-114 (117)
131 2fiy_A Protein FDHE homolog; F 21.8 53 0.0018 31.5 3.1 16 220-235 204-219 (309)
132 1qxf_A GR2, 30S ribosomal prot 21.8 48 0.0016 24.7 2.1 15 220-234 3-17 (66)
133 3fkj_A Putative phosphosugar i 21.4 44 0.0015 32.2 2.5 56 324-379 87-143 (347)
134 2fe3_A Peroxide operon regulat 20.8 93 0.0032 25.8 4.2 52 177-236 53-105 (145)
135 2a3n_A Putative glucosamine-fr 20.5 74 0.0025 30.5 3.9 54 324-377 100-154 (355)
No 1
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A* 2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A* 2h4h_A* 3jr3_A* 2h59_A*
Probab=100.00 E-value=8.5e-65 Score=484.64 Aligned_cols=239 Identities=37% Similarity=0.647 Sum_probs=205.8
Q ss_pred chHHHHhcCCcEEEEECCcccccCCCCCcCCCCcCccCCCC--CCChHHHhhchhhHHHHHHHHHhhhhhcccCCCCHHH
Q 016025 107 PSIEDINQFAKLIVLTGAGISTECGIPDYRSPNGAYSSGFK--PITHQQFVRSSRARRRYWARSYAGWRRFMAAQPNPAH 184 (396)
Q Consensus 107 ~~~~~i~~ak~IVvlTGAGISaaSGIPdFRs~~Gl~~~~~~--p~~~~~f~~~~~~~~~~w~~~~~~~~~~~~a~Pn~~H 184 (396)
.+.++|++|++|||+|||||||+||||||||++|+|+. |. .++.+.|.++|+.+|.||.+.+. .+.+++||.+|
T Consensus 5 ~l~~~l~~a~~ivv~tGAGiS~~SGIpdfR~~~Glw~~-~~~~~~~~~~f~~~p~~~~~~~~~~~~---~~~~~~Pn~~H 80 (246)
T 1yc5_A 5 EFLDLLNESRLTVTLTGAGISTPSGIPDFRGPNGIYKK-YSQNVFDIDFFYSHPEEFYRFAKEGIF---PMLQAKPNLAH 80 (246)
T ss_dssp HHHHHHHHCSSEEEEECGGGTGGGTCCCC------------CCTTBHHHHHHCHHHHHHHHHHHTG---GGGGCCCCHHH
T ss_pred HHHHHHHhCCCEEEEECceeehhhCCCCccCCCccccc-CCCceecHHHHhhCHHHHHHHHHHHHH---HhccCCCCHHH
Confidence 46788999999999999999999999999999999984 54 46788899999988888875533 34589999999
Q ss_pred HHHHHHHHhCCCceeeecCccchHhhhCCCc-eeeccccceeeeCCCCcccchhhHHHHHHhhChhHHHHHhhhcCCCCC
Q 016025 185 FALASLEKAGRIDCMITQNVDRLHHRAGSNP-LELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPG 263 (396)
Q Consensus 185 ~aLa~Le~~g~l~~VITQNIDgLh~kAG~~~-iElHGsl~~~~C~~C~~~~~~~~~~~~l~~~np~~~~~~~~l~~g~p~ 263 (396)
++|++|+++|++.+||||||||||++||+++ +|+||++++.+|+.|++.|+.+.+.+.+
T Consensus 81 ~~La~L~~~g~~~~viTQNvD~Lh~~AG~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~-------------------- 140 (246)
T 1yc5_A 81 VLLAKLEEKGLIEAVITQNIDRLHQRAGSKKVIELHGNVEEYYCVRCEKKYTVEDVIKKL-------------------- 140 (246)
T ss_dssp HHHHHHHHTTSCSEEEECCCSCHHHHTTCSCEEETTEEEEEEEETTTCCEEEHHHHHHHT--------------------
T ss_pred HHHHHHHhcCCCceEEeccccchHhHcCCCcEEEecCccceeEcCCCCCCCcHHHHHHHh--------------------
Confidence 9999999999999999999999999999998 9999999999999999988765432110
Q ss_pred CCCCcCcccCCCCCcccccccccccCCCCcCCCCCCcccCcEEEcCCCCCHHHHHHHHHHHhhCCeEEEEccCcchhhHH
Q 016025 264 SDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSLMTMSAY 343 (396)
Q Consensus 264 ~~~s~~~~~~pd~d~~i~~~~~~~~~~iP~Cp~Cgg~LRP~VVlFGE~lp~~~~~~a~~~~~~aDllLVvGTSl~V~pa~ 343 (396)
....+|+||.|||.|||+||||||++|++.++++.+++++||++|||||||.|+|++
T Consensus 141 -----------------------~~~~~p~C~~Cgg~lrP~vv~FgE~lp~~~~~~a~~~~~~adl~lviGTSl~V~P~~ 197 (246)
T 1yc5_A 141 -----------------------ESSDVPLCDDCNSLIRPNIVFFGENLPQDALREAIGLSSRASLMIVLGSSLVVYPAA 197 (246)
T ss_dssp -----------------------TTCSSCBCTTTCCBEEEEECCBTSBCCHHHHHHHHHHHHHCSEEEEESCCSCEETGG
T ss_pred -----------------------ccCCCCCCCCCCCccCcceEECCCCCCHHHHHHHHHHHhcCCEEEEECCCCcchhHH
Confidence 011479999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHCCCeEEEEcCCCCCCCCcccEEEeCcHHHHHHHHHHhCCCC
Q 016025 344 RLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVLDVGSLS 392 (396)
Q Consensus 344 ~Lv~~a~~~g~~lIiIN~~~t~~d~~a~l~I~~~a~evL~~L~~~~~l~ 392 (396)
+|+..++++|+++|+||+++++.|..+++.|+++++++|++|++.|||+
T Consensus 198 ~l~~~a~~~g~~~i~IN~~~~~~d~~~~~~i~~~~~~~l~~l~~~lg~~ 246 (246)
T 1yc5_A 198 ELPLITVRSGGKLVIVNLGETPFDDIATLKYNMDVVEFARRVMEEGGIS 246 (246)
T ss_dssp GHHHHHHHHTCEEEEECSSCCTTGGGCSEEECSCHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHcCCeEEEEeCCCCCCCcceeEEEeCCHHHHHHHHHHHcCCC
Confidence 9999998889999999999999999999999999999999999999985
No 2
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family; enzyme-substrate complex, protein binding, transcription; HET: ALY MES; 2.00A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Probab=100.00 E-value=2.3e-63 Score=476.58 Aligned_cols=234 Identities=40% Similarity=0.696 Sum_probs=200.9
Q ss_pred hHHHHhcCCcEEEEECCcccccCCCCCcCCCCcCccCCCCC---CChHHHhhchhhHHHHHHHHHhhhhhcccCCCCHHH
Q 016025 108 SIEDINQFAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKP---ITHQQFVRSSRARRRYWARSYAGWRRFMAAQPNPAH 184 (396)
Q Consensus 108 ~~~~i~~ak~IVvlTGAGISaaSGIPdFRs~~Gl~~~~~~p---~~~~~f~~~~~~~~~~w~~~~~~~~~~~~a~Pn~~H 184 (396)
+.++|++|++|||+|||||||+||||||||++|+|+ .|.+ ++.+.|.++|+.+|.||.+.+. .+. ++||.+|
T Consensus 8 l~~~l~~a~~ivv~tGAGiS~~SGIPdfR~~~Glw~-~~~~~~~~~~~~f~~~p~~~~~f~~~~~~---~~~-~~Pn~~H 82 (253)
T 1ma3_A 8 AAEILAKSKHAVVFTGAGISAESGIPTFRGEDGLWR-KYDPEEVASISGFKRNPRAFWEFSMEMKD---KLF-AEPNPAH 82 (253)
T ss_dssp HHHHHHHCSSEEEEECGGGSCC----------CCSC-SSCHHHHTBHHHHTTCHHHHHHHHHHTHH---HHT-CCCCHHH
T ss_pred HHHHHHhCCcEEEEEchhhhHhhCCCCcCCCCcccc-cCChhheecHHHHhcCHHHHHHHHHHHHH---hcc-CCCCHHH
Confidence 578899999999999999999999999999999998 4766 6788899999988888875433 234 9999999
Q ss_pred HHHHHHHHhCCCceeeecCccchHhhhCCCc-eeeccccceeeeCCCCcccchhhHHHHHHhhChhHHHHHhhhcCCCCC
Q 016025 185 FALASLEKAGRIDCMITQNVDRLHHRAGSNP-LELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPG 263 (396)
Q Consensus 185 ~aLa~Le~~g~l~~VITQNIDgLh~kAG~~~-iElHGsl~~~~C~~C~~~~~~~~~~~~l~~~np~~~~~~~~l~~g~p~ 263 (396)
++|++|+++|++.+||||||||||++||+++ +|+||++++.+|+.|++.|+.+.+.+.+
T Consensus 83 ~~La~L~~~g~~~~viTQNvD~Lh~~AG~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~-------------------- 142 (253)
T 1ma3_A 83 YAIAELERMGIVKAVITQNIDMLHQRAGSRRVLELHGSMDKLDCLDCHETYDWSEFVEDF-------------------- 142 (253)
T ss_dssp HHHHHHHHTTSEEEEEESCCSCHHHHHTCCSEEETTEEEEEEEETTTCCEEEGGGTHHHH--------------------
T ss_pred HHHHHHHhcCCCeEEEeccccccHhHhCCCCEEEeCCCcCeeeeCCCCCcCcHHHHHHHh--------------------
Confidence 9999999999999999999999999999998 9999999999999999988765432211
Q ss_pred CCCCcCcccCCCCCcccccccccccCCCCcCCCCCC-cccCcEEEcCCCCCHHHHHHHHHHHhhCCeEEEEccCcchhhH
Q 016025 264 SDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNG-VLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSLMTMSA 342 (396)
Q Consensus 264 ~~~s~~~~~~pd~d~~i~~~~~~~~~~iP~Cp~Cgg-~LRP~VVlFGE~lp~~~~~~a~~~~~~aDllLVvGTSl~V~pa 342 (396)
....+|+||.||| .|||+||||||++|++.++++.+++++||++|||||||.|+|+
T Consensus 143 -----------------------~~~~~p~C~~Cgg~~lrP~Vv~FgE~lp~~~~~~a~~~~~~adl~lviGTSl~V~P~ 199 (253)
T 1ma3_A 143 -----------------------NKGEIPRCRKCGSYYVKPRVVLFGEPLPQRTLFEAIEEAKHCDAFMVVGSSLVVYPA 199 (253)
T ss_dssp -----------------------HTTCCCCCTTTCCSCEEEEECCBTSBCCHHHHHHHHHHHHHCSEEEEESCCSCEETG
T ss_pred -----------------------ccCCCCCCCCCCCccccceEEEeCCCCCHHHHHHHHHHHHhCCEEEEECCCceeccH
Confidence 0114799999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCeEEEEcCCCCCCCCcccEEEeCcHHHHHHHHHHhC
Q 016025 343 YRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVLDVG 389 (396)
Q Consensus 343 ~~Lv~~a~~~g~~lIiIN~~~t~~d~~a~l~I~~~a~evL~~L~~~~ 389 (396)
++|+..++..|+++|+||+++++.|..+++.|+++++++|++|++.+
T Consensus 200 ~~l~~~a~~~g~~~i~iN~~~~~~d~~~~~~i~~~~~~~l~~l~~~l 246 (253)
T 1ma3_A 200 AELPYIAKKAGAKMIIVNAEPTMADPIFDVKIIGKAGEVLPKIVEEV 246 (253)
T ss_dssp GGHHHHHHHHTCEEEEEESSCCTTGGGCSEEEESCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCeEEEEeCCCCCCCCceeEEEeCCHHHHHHHHHHHH
Confidence 99999998889999999999999999999999999999999998754
No 3
>1m2k_A Silent information regulator 2; protein-ligand complex, gene regulation; HET: APR; 1.47A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A* 1ici_A*
Probab=100.00 E-value=7.5e-63 Score=472.03 Aligned_cols=233 Identities=33% Similarity=0.597 Sum_probs=208.5
Q ss_pred chHHHHhcCCcEEEEECCcccccCCCCCcCCCCcCccCCCCC---CChHHHhhchhhHHHHHHHHHhhhhhcccCCCCHH
Q 016025 107 PSIEDINQFAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKP---ITHQQFVRSSRARRRYWARSYAGWRRFMAAQPNPA 183 (396)
Q Consensus 107 ~~~~~i~~ak~IVvlTGAGISaaSGIPdFRs~~Gl~~~~~~p---~~~~~f~~~~~~~~~~w~~~~~~~~~~~~a~Pn~~ 183 (396)
.+.++|++|++|||+|||||||+||||||||++|+|+. |.+ ++.+.|.++|+.+|.||.+.+. .+.+++||.+
T Consensus 4 ~l~~~i~~a~~ivvltGAGiS~~SGIPdfR~~~Glw~~-~~~~~~~~~~~f~~~p~~~w~~~~~~~~---~~~~~~Pn~~ 79 (249)
T 1m2k_A 4 KLLKTIAESKYLVALTGAGVSAESGIPTFRGKDGLWNR-YRPEELANPQAFAKDPEKVWKWYAWRME---KVFNAQPNKA 79 (249)
T ss_dssp HHHHHHHTCSSEEEEECGGGGGGGTCCCSSSTTCHHHH-SCHHHHSSHHHHHHCHHHHHHHHHHHHH---HHHHCCCCHH
T ss_pred HHHHHHHhCCCEEEEECchhhhhhCCCCccCCCcCccC-CCHHhcccHHHHhcCHHHHHHHHHHHHH---HhCcCCCCHH
Confidence 46789999999999999999999999999999999984 665 6788888899877777654332 2357999999
Q ss_pred HHHHHHHHHhCCCceeeecCccchHhhhCCCc-eeeccccceeeeCCCCcccchhhHHHHHHhhChhHHHHHhhhcCCCC
Q 016025 184 HFALASLEKAGRIDCMITQNVDRLHHRAGSNP-LELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSP 262 (396)
Q Consensus 184 H~aLa~Le~~g~l~~VITQNIDgLh~kAG~~~-iElHGsl~~~~C~~C~~~~~~~~~~~~l~~~np~~~~~~~~l~~g~p 262 (396)
|++|++|+++|++.+||||||||||++||+++ +|+||++++.+|..|++.|+++..
T Consensus 80 H~~La~L~~~g~~~~viTQNiDgLh~~AG~~~v~elHG~~~~~~C~~C~~~~~~~~~----------------------- 136 (249)
T 1m2k_A 80 HQAFAELERLGVLKCLITQNVDDLHERAGSRNVIHLHGSLRVVRCTSCNNSFEVESA----------------------- 136 (249)
T ss_dssp HHHHHHHHHTTCEEEEEECCCSCHHHHTTCCSEEETTEEEEEEEESSSSCEEECSSC-----------------------
T ss_pred HHHHHHHHhCCCCcEEEECCccchhhhcCCCcEEEecCCcceeEeCCCCCcccchhh-----------------------
Confidence 99999999999999999999999999999988 999999999999999987754210
Q ss_pred CCCCCcCcccCCCCCcccccccccccCCCCcCCCCCCcccCcEEEcCCCCCHHHHHHHHHHHhhCCeEEEEccCcchhhH
Q 016025 263 GSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSLMTMSA 342 (396)
Q Consensus 263 ~~~~s~~~~~~pd~d~~i~~~~~~~~~~iP~Cp~Cgg~LRP~VVlFGE~lp~~~~~~a~~~~~~aDllLVvGTSl~V~pa 342 (396)
++ ...+|+||.|||.|||+||||||++|++.++++.+++++||++|||||||.|+|+
T Consensus 137 -----------------~~------~~~~p~C~~Cgg~lrP~Vv~FgE~lp~~~~~~a~~~~~~adlllviGTSl~V~P~ 193 (249)
T 1m2k_A 137 -----------------PK------IPPLPKCDKCGSLLRPGVVWAGEMLPPDVLDRAMREVERADVIIVAGTSAVVQPA 193 (249)
T ss_dssp -----------------CC------SSSCCBCSSSSSBEEEEECCTTSCCCHHHHHHHHHHHHHCSEEEEESCCSCSTTG
T ss_pred -----------------cc------CCCCCCCCCCCCCcCCeEEecCCCCCHHHHHHHHHHHhcCCEEEEEccCCCccch
Confidence 11 1147999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCeEEEEcCCCCCCCCcccEEEeCcHHHHHHHHHHhC
Q 016025 343 YRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVLDVG 389 (396)
Q Consensus 343 ~~Lv~~a~~~g~~lIiIN~~~t~~d~~a~l~I~~~a~evL~~L~~~~ 389 (396)
++|+..+++.|+++|+||+++++.|..+++.|.++++++|++|++.+
T Consensus 194 ~~l~~~a~~~g~~~i~IN~~~~~~d~~~~~~i~~~~~~~l~~l~~~l 240 (249)
T 1m2k_A 194 ASLPLIVKQRGGAIIEINPDETPLTPIADYSLRGKAGEVMDELVRHV 240 (249)
T ss_dssp GGHHHHHHHTTCEEEEECSSCCTTGGGCSEEECSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCeEEEEeCCCCCCCcceeEEEeCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998754
No 4
>3riy_A NAD-dependent deacetylase sirtuin-5; desuccinylase, demalonylase, posttranslational modification, binding domain, rossmann fold domain; HET: SLL NAD; 1.55A {Homo sapiens} SCOP: c.31.1.5 PDB: 3rig_A* 4f4u_A* 4f56_A* 4hda_A* 2b4y_A* 2nyr_A* 4g1c_A*
Probab=100.00 E-value=1.6e-62 Score=475.57 Aligned_cols=250 Identities=26% Similarity=0.486 Sum_probs=205.8
Q ss_pred chHHHHhcCCcEEEEECCcccccCCCCCcCCCCcCccCCCCC---CChHHHhhchhhHHHHHHHHHhhhhhcccCCCCHH
Q 016025 107 PSIEDINQFAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKP---ITHQQFVRSSRARRRYWARSYAGWRRFMAAQPNPA 183 (396)
Q Consensus 107 ~~~~~i~~ak~IVvlTGAGISaaSGIPdFRs~~Gl~~~~~~p---~~~~~f~~~~~~~~~~w~~~~~~~~~~~~a~Pn~~ 183 (396)
.+.++|++|++|||+|||||||+||||||||++|+|+ .|++ .+.+.|.++|+.+|.||... +..+.+++||.+
T Consensus 13 ~l~~~l~~a~~ivvlTGAGiSt~SGIPdFR~~~Glw~-~~~~~~l~~~~~f~~~p~~~w~fy~~~---~~~~~~~~Pn~~ 88 (273)
T 3riy_A 13 DFRKFFAKAKHIVIISGAGVSAESGVPTFRGAGGYWR-KWQAQDLATPLAFAHNPSRVWEFYHYR---REVMGSKEPNAG 88 (273)
T ss_dssp HHHHHHHHCSEEEEEECGGGTGGGTCCCSSSGGGEET-TEEHHHHSSHHHHHHCHHHHHHHHHHH---HHHHTTCCCCHH
T ss_pred HHHHHHHhCCcEEEEECcccchhhCCCccccccchhh-hCChhhcCCHHHHhhCHHHHHHHHHHH---HHHhhhCCCCHH
Confidence 4578899999999999999999999999999999997 4554 46777888887666655321 123458999999
Q ss_pred HHHHHHHHH----hCCCceeeecCccchHhhhCCCc-eeeccccceeeeCCCCcccchhhHHHHHHhhChhHHHHHhhhc
Q 016025 184 HFALASLEK----AGRIDCMITQNVDRLHHRAGSNP-LELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLD 258 (396)
Q Consensus 184 H~aLa~Le~----~g~l~~VITQNIDgLh~kAG~~~-iElHGsl~~~~C~~C~~~~~~~~~~~~l~~~np~~~~~~~~l~ 258 (396)
|++|++|++ +|++++||||||||||++||+++ +|+||++++.+|.+|++.|++.. +|.+... .
T Consensus 89 H~~La~Le~~~~~~g~~~~viTQNiDgLh~~AG~~~vielHG~~~~~~C~~C~~~~~~~~--------~p~~~~~----~ 156 (273)
T 3riy_A 89 HRAIAECETRLGKQGRRVVVITQNIDELHRKAGTKNLLEIHGSLFKTRCTSCGVVAENYK--------SPICPAL----S 156 (273)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEESCCSCHHHHHTCCSEEETTEEEEEEEETTTCCEEECCC--------SSSSGGG----T
T ss_pred HHHHHHHHHhhhhcCceeEEEEecccchHhhcCCCCEEEecCcCCeeEcCCCCCcccccc--------cchhhhh----h
Confidence 999999995 58999999999999999999988 99999999999999999875421 1111100 0
Q ss_pred CCCCCCCCCcCcccCCCCCcccccccccccCCCCcC--CCCCCcccCcEEEcCCCCCHHHHHHHHHHHhhCCeEEEEccC
Q 016025 259 YGSPGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTC--QKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSS 336 (396)
Q Consensus 259 ~g~p~~~~s~~~~~~pd~d~~i~~~~~~~~~~iP~C--p~Cgg~LRP~VVlFGE~lp~~~~~~a~~~~~~aDllLVvGTS 336 (396)
+ +..|+.+... .. .....+|+| |.|||.|||+||||||++|++.++++.+++++||++||||||
T Consensus 157 -~----------~~~~~~~~~~-~~--~~~~~~P~C~~~~Cgg~lrP~VV~FGE~lp~~~~~~a~~~~~~aDl~lviGTS 222 (273)
T 3riy_A 157 -G----------KGAPEPGTQD-AS--IPVEKLPRCEEAGCGGLLRPHVVWFGENLDPAILEEVDRELAHCDLCLVVGTS 222 (273)
T ss_dssp -T----------CCCCSTTCCC-CC--CCGGGSCBCCGGGCCCBEEEEECCTTSBCCHHHHHHHHHHHHHCSEEEEESCC
T ss_pred -c----------ccCCcccccc-cc--cccCCCCCCCCCCCCCeeCCcEEEeCCcCCHHHHHHHHHHHhcCCEEEEEeeC
Confidence 0 0112221100 00 011258999 789999999999999999999999999999999999999999
Q ss_pred cchhhHHHHHHHHHHCCCeEEEEcCCCCCCCCcccEEEeCcHHHHHHHHH
Q 016025 337 LMTMSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVL 386 (396)
Q Consensus 337 l~V~pa~~Lv~~a~~~g~~lIiIN~~~t~~d~~a~l~I~~~a~evL~~L~ 386 (396)
|+|+|+++|+..++++|+++++||+++|+.|..++++|+++++++||+|+
T Consensus 223 l~V~Paa~l~~~a~~~g~~~v~IN~~~t~~d~~~~~~i~g~~~~~l~~l~ 272 (273)
T 3riy_A 223 SVVYPAAMFAPQVAARGVPVAEFNTETTPATNRFRFHFQGPCGTTLPEAL 272 (273)
T ss_dssp SCEETGGGHHHHHHHTTCCEEEEESSCCTTGGGSSEEEESCHHHHHHHHH
T ss_pred CcchhHHHhHHHHHHCCCEEEEECCCCCCCCcceeEEEeCCHHHHHHHHh
Confidence 99999999999888899999999999999999999999999999999986
No 5
>3u31_A SIR2A, transcriptional regulatory protein SIR2 homologue; Zn-binding domain, rossmann fold domain; HET: MYK NAD; 2.20A {Plasmodium falciparum} PDB: 3u3d_A* 3jwp_A*
Probab=100.00 E-value=5.6e-61 Score=467.65 Aligned_cols=235 Identities=28% Similarity=0.464 Sum_probs=200.7
Q ss_pred chHHHHhcCCcEEEEECCcccccCCCCCcCC-CCcCccCCCCC---CChHHHhhchhhHHHHHHHHHhhhhhcccCCCCH
Q 016025 107 PSIEDINQFAKLIVLTGAGISTECGIPDYRS-PNGAYSSGFKP---ITHQQFVRSSRARRRYWARSYAGWRRFMAAQPNP 182 (396)
Q Consensus 107 ~~~~~i~~ak~IVvlTGAGISaaSGIPdFRs-~~Gl~~~~~~p---~~~~~f~~~~~~~~~~w~~~~~~~~~~~~a~Pn~ 182 (396)
.+.++|++|++|||+|||||||+|||||||+ .+|+|+ .|+| .+...|.++|+.+|.||.+.+. ..+++||.
T Consensus 37 ~l~~~i~~a~~ivvlTGAGiSt~SGIPdFR~~~~Glw~-~~~p~~~~~~~~f~~~p~~~w~~~~~~~~----~~~a~Pn~ 111 (290)
T 3u31_A 37 ELAKIIKKCKHVVALTGSGTSAESNIPSFRGSSNSIWS-KYDPRIYGTIWGFWKYPEKIWEVIRDISS----DYEIEINN 111 (290)
T ss_dssp HHHHHHHTCSSEEEEECGGGTGGGTCCSCTTCTTSGGG-GSCHHHHTBHHHHHHCHHHHHHHHHHHHH----HSCCCCCH
T ss_pred HHHHHHHhCCCEEEEeCCccccccCCccccccccchhh-cCCHHHhhCHHhhhhCHHHHHHHHHHHhh----hccCCCCH
Confidence 3568899999999999999999999999999 789997 4666 3566777888766666643221 25899999
Q ss_pred HHHHHHHHHHhCCCceeeecCccchHhhhCCCc-eeeccccceeeeCCCCcccchhhHHHHHHhhChhHHHHHhhhcCCC
Q 016025 183 AHFALASLEKAGRIDCMITQNVDRLHHRAGSNP-LELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGS 261 (396)
Q Consensus 183 ~H~aLa~Le~~g~l~~VITQNIDgLh~kAG~~~-iElHGsl~~~~C~~C~~~~~~~~~~~~l~~~np~~~~~~~~l~~g~ 261 (396)
+|++|++|++.|++.+||||||||||++||+++ +|+||+++..+|..|++.|+.+....
T Consensus 112 ~H~aLa~Le~~g~~~~viTQNVDgLh~rAG~~~vielHGs~~~~~C~~C~~~~~~~~~~~-------------------- 171 (290)
T 3u31_A 112 GHVALSTLESLGYLKSVVTQNVDGLHEASGNTKVISLHGNVFEAVCCTCNKIVKLNKIML-------------------- 171 (290)
T ss_dssp HHHHHHHHHHTTCEEEEEESCCSCHHHHTTCSCEEETTEEEEEEEETTTCCEEECCTGGG--------------------
T ss_pred HHHHHHHHHHcCCCceEEEechHHHHHHcCCCcEEEecCCcCcceeCCCCCcCChhHhhh--------------------
Confidence 999999999999999999999999999999988 99999999999999999876532100
Q ss_pred CCCCCCcCcccCCCCCcccccccccccCCCCcCCCCCCcccCcEEEcCCCCCHHHHHHHHHHHhhCCeEEEEccCcchhh
Q 016025 262 PGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSLMTMS 341 (396)
Q Consensus 262 p~~~~s~~~~~~pd~d~~i~~~~~~~~~~iP~Cp~Cgg~LRP~VVlFGE~lp~~~~~~a~~~~~~aDllLVvGTSl~V~p 341 (396)
+ + ... .....+|+|| |||.|||+||||||.+|++.++++.+++++||++|||||||+|+|
T Consensus 172 ----------~--~-~~~------~~~~~~P~C~-Cgg~lrPdVV~FGE~lp~~~~~~a~~~~~~aDllLviGTSl~V~P 231 (290)
T 3u31_A 172 ----------Q--K-TSH------FMHQLPPECP-CGGIFKPNIILFGEVVSSDLLKEAEEEIAKCDLLLVIGTSSTVST 231 (290)
T ss_dssp ----------S--T-TSS------TTTSSSCBCT-TSCBEEEEECCBTSBCCHHHHHHHHHHHHHCSEEEEESCCSCSHH
T ss_pred ----------c--c-ccc------ccccCCCCCC-CCCEECCeEEEcCCCCCHHHHHHHHHHHhcCCEEEEECcCCcchh
Confidence 0 0 000 0112579999 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHCCCeEEEEcCCCCCCCC-cccEEEeCcHHHHHHHHHH
Q 016025 342 AYRLVRAAHEAGSTIAIVNVGETRADD-LTTLKISARLGEILPRVLD 387 (396)
Q Consensus 342 a~~Lv~~a~~~g~~lIiIN~~~t~~d~-~a~l~I~~~a~evL~~L~~ 387 (396)
+++|+..++++|+++|+||+++|+.++ .+++.|+++|+++++ +++
T Consensus 232 aa~l~~~a~~~g~~~v~IN~~~t~~~~~~~d~~i~g~a~~vl~-~~~ 277 (290)
T 3u31_A 232 ATNLCHFACKKKKKIVEINISKTYITNKMSDYHVCAKFSELTK-VAN 277 (290)
T ss_dssp HHHHHHHHHHTTCCEEEEESSCCTTTTTTCSEEEESCGGGHHH-HHH
T ss_pred HHHHHHHHHHcCCEEEEECCCCCCCCCccceEEEECCHHHHHH-HHH
Confidence 999999999999999999999999985 689999999999886 444
No 6
>1s5p_A NAD-dependent deacetylase; protein deacetylase, SIR2 homologue, hydrolase; HET: ALY; 1.96A {Escherichia coli} SCOP: c.31.1.5
Probab=100.00 E-value=3.8e-61 Score=456.64 Aligned_cols=225 Identities=28% Similarity=0.434 Sum_probs=188.2
Q ss_pred CCcEEEEECCcccccCCCCCcCCCCcCccCCCCC---CChHHHhhchhhHHHHHHHHHhhhhhcccCCCCHHHHHHHHHH
Q 016025 115 FAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKP---ITHQQFVRSSRARRRYWARSYAGWRRFMAAQPNPAHFALASLE 191 (396)
Q Consensus 115 ak~IVvlTGAGISaaSGIPdFRs~~Gl~~~~~~p---~~~~~f~~~~~~~~~~w~~~~~~~~~~~~a~Pn~~H~aLa~Le 191 (396)
|++|||+|||||||+||||||||++|+|+ .+.+ ++.+.|.++|+.+|.||.+...... -.+++||.+|++|++|+
T Consensus 1 a~~ivvltGAGiS~~SGIPdfR~~~Glw~-~~~~~~~~~~~~f~~~p~~~~~f~~~~~~~~~-~~~a~Pn~~H~~La~L~ 78 (235)
T 1s5p_A 1 KPRVLVLTGAGISAESGIRTFRAADGLWE-EHRVEDVATPEGFDRDPELVQAFYNARRRQLQ-QPEIQPNAAHLALAKLQ 78 (235)
T ss_dssp CCCEEEEECTHHHHTTTCCCCCSSSCEET-TEEHHHHSSHHHHHHCHHHHHHHHHHHHHHHT-STTCCCCHHHHHHHHHH
T ss_pred CCcEEEEechhhhhhhCCCCCCCCCCCcc-CCCHhHcccHHHHhhCHHHHHHHHHHHHHHhh-hcCCCCCHHHHHHHHHH
Confidence 68999999999999999999999999997 4655 4788899999988888864322111 13599999999999999
Q ss_pred H-hCCCceeeecCccchHhhhCCCc-eeeccccceeeeCCCCcccchhhHHHHHHhhChhHHHHHhhhcCCCCCCCCCcC
Q 016025 192 K-AGRIDCMITQNVDRLHHRAGSNP-LELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFG 269 (396)
Q Consensus 192 ~-~g~l~~VITQNIDgLh~kAG~~~-iElHGsl~~~~C~~C~~~~~~~~~~~~l~~~np~~~~~~~~l~~g~p~~~~s~~ 269 (396)
+ .|++.+||||||||||++||+++ +|+||+++.++|.+|++.|+++.
T Consensus 79 ~~~g~~~~viTQNvD~Lh~~AG~~~v~elHG~~~~~~C~~C~~~~~~~~------------------------------- 127 (235)
T 1s5p_A 79 DALGDRFLLVTQNIDNLHERAGNTNVIHMHGELLKVRCSQSGQVLDWTG------------------------------- 127 (235)
T ss_dssp HHHGGGEEEEESCCSSHHHHHTCCSCEETTEEEEEEEETTTCCEEECCS-------------------------------
T ss_pred HhhCCceEEEeccccchhhhcCCCcEEEecCCceEEEeCCCCCcccchh-------------------------------
Confidence 9 69999999999999999999888 99999999999999998765421
Q ss_pred cccCCCCCcccccccccccCCCCcCCCCCCcccCcEEEcCCCCCHHHHHHHHHHHhhCCeEEEEccCcchhhHHHHHHHH
Q 016025 270 MKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSLMTMSAYRLVRAA 349 (396)
Q Consensus 270 ~~~~pd~d~~i~~~~~~~~~~iP~Cp~Cgg~LRP~VVlFGE~lp~~~~~~a~~~~~~aDllLVvGTSl~V~pa~~Lv~~a 349 (396)
+ +. ...+|+|+.|||.|||+||||||. |. .++++.+++++||++||||||++|+|+++|+..+
T Consensus 128 -------~--~~------~~~~p~c~~Cgg~lrP~vv~FGE~-p~-~~~~a~~~~~~adl~lviGTSl~V~Pa~~l~~~a 190 (235)
T 1s5p_A 128 -------D--VT------PEDKCHCCQFPAPLRPHVVWFGEM-PL-GMDEIYMALSMADIFIAIGTSGHVYPAAGFVHEA 190 (235)
T ss_dssp -------C--CC------SSCCC-------CEEEEECCTTSC-CS-SHHHHHHHHHHCSEEEEESCCTTEETGGGHHHHH
T ss_pred -------h--cc------CCCCCCCCCCCCeecCcEEEeCCC-HH-HHHHHHHHHhcCCEEEEECcCCchhhHHHHHHHH
Confidence 0 10 114789999999999999999999 74 5899999999999999999999999999999999
Q ss_pred HHCCCeEEEEcCCCCCCCCcccEEEeCcHHHHHHHHHHhC
Q 016025 350 HEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVLDVG 389 (396)
Q Consensus 350 ~~~g~~lIiIN~~~t~~d~~a~l~I~~~a~evL~~L~~~~ 389 (396)
+++|+++|+||+++++.|..++++|+++++++|++|++.+
T Consensus 191 ~~~g~~~i~iN~~~t~~~~~~~~~i~~~~~~~l~~l~~~l 230 (235)
T 1s5p_A 191 KLHGAHTVELNLEPSQVGNEFAEKYYGPASQVVPEFVEKL 230 (235)
T ss_dssp HHTTCEEEEEESSSCC---CCSEEEESCHHHHHHHHHHHH
T ss_pred HHcCCeEEEEECCCCCCCccccEEEeCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998754
No 7
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP ribose,, gene regulation; HET: ALY OAD; 1.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A* 1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Probab=100.00 E-value=7.2e-60 Score=460.42 Aligned_cols=239 Identities=24% Similarity=0.417 Sum_probs=197.2
Q ss_pred chHHHHhc--CCcEEEEECCcccccCCCCCcCCCC-cCccCC--CC---C---CChHHHhhchhhHHHHHHHHHhhhhhc
Q 016025 107 PSIEDINQ--FAKLIVLTGAGISTECGIPDYRSPN-GAYSSG--FK---P---ITHQQFVRSSRARRRYWARSYAGWRRF 175 (396)
Q Consensus 107 ~~~~~i~~--ak~IVvlTGAGISaaSGIPdFRs~~-Gl~~~~--~~---p---~~~~~f~~~~~~~~~~w~~~~~~~~~~ 175 (396)
.+.++|++ |++|||+|||||||+||||||||++ |+|+.. +. | ++...|.++|..+|.||.+.+ .
T Consensus 10 ~l~~~i~~~~a~~ivvltGAGiSt~SGIPdfR~~~~Glw~~~~~~~l~~~e~~~~~~~f~~~p~~f~~~~~~~~-----~ 84 (289)
T 1q1a_A 10 KIAAHMKSNPNAKVIFMVGAGISTSCGIPDFRSPGTGLYHNLARLKLPYPEAVFDVDFFQSDPLPFYTLAKELY-----P 84 (289)
T ss_dssp HHHHHHHHSTTSCEEEEECGGGGGGGTCCCSSSTTTSGGGSCGGGCCSSGGGGGBHHHHHHCCHHHHHHHHHHC-----S
T ss_pred HHHHHHHhcCCCCEEEEECCceeHhhCCCCcCCCCCcccccccccCCCCHHHhcCHHHHhcCHHHHHHHHHHHh-----h
Confidence 35688999 9999999999999999999999995 999851 21 1 345568888887666664322 3
Q ss_pred ccCCCCHHHHHHHHHHHhCCCceeeecCccchHhhhCCC--c-eeeccccceeeeCCCCcccchhhHHHHHHhhChhHHH
Q 016025 176 MAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSN--P-LELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAE 252 (396)
Q Consensus 176 ~~a~Pn~~H~aLa~Le~~g~l~~VITQNIDgLh~kAG~~--~-iElHGsl~~~~C~~C~~~~~~~~~~~~l~~~np~~~~ 252 (396)
.+++||.+|++|++|++.|++.+||||||||||++||++ + +|+||++++++|.+|++.|+.+.+.+.+..
T Consensus 85 ~~a~Pn~~H~~La~L~~~g~~~~viTQNVDgLh~~AG~~~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~------- 157 (289)
T 1q1a_A 85 GNFRPSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHCHCIGCGKVYPPQVFKSKLAE------- 157 (289)
T ss_dssp SSCCCCHHHHHHHHHHHTTCEEEEEECCSSCHHHHTTCCGGGEEETTEEEEEEEETTTCCEECHHHHHHHHTC-------
T ss_pred CcCCCCHHHHHHHHHHhCCCccEEEecCccchHHHcCCCcccEEEecCCcCceEECCCCCCCcHHHHHHHHhh-------
Confidence 479999999999999999999999999999999999996 3 999999999999999999887654332200
Q ss_pred HHhhhcCCCCCCCCCcCcccCCCCCcccccccccccCCCCcCCCCCCcccCcEEEcCCCCCHHHHHHH---H--------
Q 016025 253 AIESLDYGSPGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKA---M-------- 321 (396)
Q Consensus 253 ~~~~l~~g~p~~~~s~~~~~~pd~d~~i~~~~~~~~~~iP~Cp~Cgg~LRP~VVlFGE~lp~~~~~~a---~-------- 321 (396)
.....+|+||.|||.|||+||||||++|++.++.+ .
T Consensus 158 ---------------------------------~~~~~~P~C~~Cgg~lrP~vv~FGE~lp~~~~~~~~~~~~~l~~~~~ 204 (289)
T 1q1a_A 158 ---------------------------------HPIKDFVKCDVCGELVKPAIVFFGEDLPDSFSETWLNDSEWLREKIT 204 (289)
T ss_dssp ---------------------------------SSCCSCCBCTTTCCBEEEEECCBTSBCCHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------------------------ccCCCCccCCCCCCEECCCEEEcCCCCCHHHHHHHHHhhhhhhhhhh
Confidence 01125799999999999999999999998764433 2
Q ss_pred --HHHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCCCC----CCCcccEEEeCcHHHHHHHHHHhCCC
Q 016025 322 --EAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETR----ADDLTTLKISARLGEILPRVLDVGSL 391 (396)
Q Consensus 322 --~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~~t~----~d~~a~l~I~~~a~evL~~L~~~~~l 391 (396)
+.+.+||++||||||++|+|+++|+..++ .|+++|+||++++. .+..++++|+++|+++|++|++.+++
T Consensus 205 a~~~~~~~DlllviGTSl~V~Pa~~l~~~~~-~~~~~v~IN~~~~~~~~~~~~~~d~~i~~~~~~~l~~l~~~l~~ 279 (289)
T 1q1a_A 205 TSGKHPQQPLVIVVGTSLAVYPFASLPEEIP-RKVKRVLCNLETVGDFKANKRPTDLIVHQYSDEFAEQLVEELGW 279 (289)
T ss_dssp C----CCCCEEEEESCCCCEETTTHHHHHSC-TTSEEEEESSSCCTHHHHSCCTTCEEECCCHHHHHHHHHHHHTC
T ss_pred HHHHhccCCEEEEEccCCChhhHHHHHHHHh-cCCCEEEEECCCcccCCCCCcceeEEEeCCHHHHHHHHHHHcCC
Confidence 34679999999999999999999998876 58999999999986 24468999999999999999998876
No 8
>3k35_A NAD-dependent deacetylase sirtuin-6; rossmann fold, Zn-binding domain, structural genomics, struc genomics consortium, SGC, ADP-ribosylation; HET: APR; 2.00A {Homo sapiens}
Probab=100.00 E-value=2e-60 Score=467.20 Aligned_cols=236 Identities=30% Similarity=0.489 Sum_probs=193.2
Q ss_pred hHHHHhcCCcEEEEECCcccccCCCCCcCCCCcCccCCCCCCChHHHhhchhhHHHHHHHHHhhhhhcccCCCCHHHHHH
Q 016025 108 SIEDINQFAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVRSSRARRRYWARSYAGWRRFMAAQPNPAHFAL 187 (396)
Q Consensus 108 ~~~~i~~ak~IVvlTGAGISaaSGIPdFRs~~Gl~~~~~~p~~~~~f~~~~~~~~~~w~~~~~~~~~~~~a~Pn~~H~aL 187 (396)
+.++|++|++|||+|||||||+|||||||+++|+|+.. .+..+|.. .| .+.+++||.+|++|
T Consensus 37 l~~~i~~a~~ivvlTGAGISteSGIPdFR~~~Glw~~~-------~~~~~p~~---~~--------~f~~a~Pn~~H~aL 98 (318)
T 3k35_A 37 LARLVWQSSSVVFHTGAGISTASGIPDFRGPHGVWTME-------ERGLAPKF---DT--------TFESARPTQTHMAL 98 (318)
T ss_dssp HHHHHHHCSCEEEEECGGGSGGGTCCCSSSTTCHHHHH-------TTTCCCCC---SS--------CTTTCCCCHHHHHH
T ss_pred HHHHHHhCCCEEEEeccccChhhCCCccccCCCcchhh-------hccCCHHH---HH--------HhhhCCCCHHHHHH
Confidence 45778999999999999999999999999999999731 01112210 01 23478999999999
Q ss_pred HHHHHhCCCceeeecCccchHhhhCCC--c-eeeccccceeeeCCCCcccchhhHHHHHHhhChhHHHHHhhhcCCCCCC
Q 016025 188 ASLEKAGRIDCMITQNVDRLHHRAGSN--P-LELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGS 264 (396)
Q Consensus 188 a~Le~~g~l~~VITQNIDgLh~kAG~~--~-iElHGsl~~~~C~~C~~~~~~~~~~~~l~~~np~~~~~~~~l~~g~p~~ 264 (396)
++|+++|++.+||||||||||++||++ + +|+||++++.+|..|++.|+++.+...
T Consensus 99 a~Le~~g~~~~viTQNIDgLh~rAG~~~~~VielHGsl~~~~C~~C~~~~~~~~~~~~---------------------- 156 (318)
T 3k35_A 99 VQLERVGLLRFLVSQNVDGLHVRSGFPRDKLAELHGNMFVEECAKCKTQYVRDTVVGT---------------------- 156 (318)
T ss_dssp HHHHHTTCCCEEEECCCSCHHHHBTCCGGGEEETTCCTTEEEETTTCCEEECSSCCSC----------------------
T ss_pred HHHHHcCCceEEEEecccchHhhcCCCccCEEEeCCCCCeeEeCCCCCccchHHhhhh----------------------
Confidence 999999999999999999999999995 4 999999999999999998876432100
Q ss_pred CCCcCcccCCCCCcccccccccccCCCCcCCCCCCcccCcEEEcCCCCCHHHHHHHHHHHhhCCeEEEEccCcchhhHHH
Q 016025 265 DRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSLMTMSAYR 344 (396)
Q Consensus 265 ~~s~~~~~~pd~d~~i~~~~~~~~~~iP~Cp~Cgg~LRP~VVlFGE~lp~~~~~~a~~~~~~aDllLVvGTSl~V~pa~~ 344 (396)
+...++++ ..+ ....+.|+.|||.|||+||||||++|.+.+++|.+++++||++|||||||+|+|+++
T Consensus 157 -----~~~~p~~~--~C~-----~~~~~~c~~CgG~LRPdVV~FGE~lP~~~~~~a~~~~~~aDllLViGTSL~V~Paa~ 224 (318)
T 3k35_A 157 -----MGLKATGR--LCT-----VAKARGLRACRGELRDTILDWEDSLPDRDLALADEASRNADLSITLGTSLQIRPSGN 224 (318)
T ss_dssp -----CSSCEEEE--ECC-----C--------CCCEEEECCCCTTCCCCHHHHHHHHHHHHTCSEEEEESCCCCSTTGGG
T ss_pred -----cccCCCCC--cCc-----ccccccccCcCCeeCCCEEEccCcCCHHHHHHHHHHHhcCCEEEEEccCCCchhhhh
Confidence 00000000 000 012345678999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCeEEEEcCCCCCCCCcccEEEeCcHHHHHHHHHHhCCCCCCC
Q 016025 345 LVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVLDVGSLSIPA 395 (396)
Q Consensus 345 Lv~~a~~~g~~lIiIN~~~t~~d~~a~l~I~~~a~evL~~L~~~~~l~~p~ 395 (396)
|+..++++|+++++||+++|+.|..++++|+++|+++|++|++.|+++||+
T Consensus 225 l~~~a~~~G~~vviIN~~~t~~d~~adl~i~g~~~evl~~L~~~Lg~~iP~ 275 (318)
T 3k35_A 225 LPLATKRRGGRLVIVNLQPTKHDRHADLRIHGYVDEVMTRLMKHLGLEIPA 275 (318)
T ss_dssp HHHHHHHTTCEEEEECSSCCTTGGGCSEEECSCHHHHHHHHHHHHTCCCCC
T ss_pred hHHHHHhcCCEEEEECCCCCCCCCcccEEEeCCHHHHHHHHHHHhCCCCCC
Confidence 999999999999999999999999999999999999999999999999996
No 9
>3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent deacetylase, sirtuin, substrate peptide comple hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens} PDB: 3gls_A 3glt_A* 3glu_A 4hd8_A* 4fvt_A*
Probab=100.00 E-value=2.2e-59 Score=455.05 Aligned_cols=235 Identities=27% Similarity=0.416 Sum_probs=197.1
Q ss_pred chHHHHhc--CCcEEEEECCcccccCCCCCcCCCC-cCccC--CCC---C---CChHHHhhchhhHHHHHHHHHhhhhhc
Q 016025 107 PSIEDINQ--FAKLIVLTGAGISTECGIPDYRSPN-GAYSS--GFK---P---ITHQQFVRSSRARRRYWARSYAGWRRF 175 (396)
Q Consensus 107 ~~~~~i~~--ak~IVvlTGAGISaaSGIPdFRs~~-Gl~~~--~~~---p---~~~~~f~~~~~~~~~~w~~~~~~~~~~ 175 (396)
.+.++|++ |++|||+|||||||+||||||||++ |+|.. .|. | ++...|.++|..+|.||.+. ..
T Consensus 13 ~la~~i~~~~a~~IvvlTGAGISteSGIPdFR~~~~Glw~~~~~~~l~~pe~~~~~~~f~~~P~~f~~~~~~~-----~~ 87 (285)
T 3glr_A 13 DVAELIRARACQRVVVMVGAGISTPSGIPDFRSPGSGLYSNLQQYDLPYPEAIFELPFFFHNPKPFFTLAKEL-----YP 87 (285)
T ss_dssp HHHHHHHTTSCCCEEEEECGGGTGGGTCCCTTSSSSHHHHHHHTTCCSSGGGGGCHHHHHHCCHHHHHHHHHH-----ST
T ss_pred HHHHHHHhcCCCeEEEEeCCccchhhCCCCcccCCCccccchhccCCCCHHHHhCHHHHhhCcHHHHHHHHHh-----hh
Confidence 45788996 8999999999999999999999995 99974 122 2 34556778887555544321 12
Q ss_pred ccCCCCHHHHHHHHHHHhCCCceeeecCccchHhhhCCC--c-eeeccccceeeeCCCCcccchhhHHHHHHhhChhHHH
Q 016025 176 MAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSN--P-LELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAE 252 (396)
Q Consensus 176 ~~a~Pn~~H~aLa~Le~~g~l~~VITQNIDgLh~kAG~~--~-iElHGsl~~~~C~~C~~~~~~~~~~~~l~~~np~~~~ 252 (396)
.+++||.+|++|++|+++|++.+||||||||||++||++ + +|+||++++.+|..|++.|+++.+...+.
T Consensus 88 ~~a~Pn~~H~~La~Le~~g~l~~viTQNIDgLh~rAG~~~~~VielHGs~~~~~C~~C~~~~~~~~~~~~i~-------- 159 (285)
T 3glr_A 88 GNYKPNVTHYFLRLLHDKGLLLRLYTQNIDGLERVSGIPASKLVEAHGTFASATCTVCQRPFPGEDIRADVM-------- 159 (285)
T ss_dssp TSCCCCHHHHHHHHHHHTTCEEEEEECCCSCHHHHTTCCGGGEEETTEEEEEEEETTTCCEEEGGGGHHHHH--------
T ss_pred ccCCCCHHHHHHHHHHHcCCCceEEeeeecchHhhcCCCcccEEEecCCCCeEEECCCCCcCCHHHHHHHhh--------
Confidence 478999999999999999999999999999999999975 4 99999999999999999988765432110
Q ss_pred HHhhhcCCCCCCCCCcCcccCCCCCcccccccccccCCCCcCCCCCCcccCcEEEcCCCCCHHHHHHHHHHHhhCCeEEE
Q 016025 253 AIESLDYGSPGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLV 332 (396)
Q Consensus 253 ~~~~l~~g~p~~~~s~~~~~~pd~d~~i~~~~~~~~~~iP~Cp~Cgg~LRP~VVlFGE~lp~~~~~~a~~~~~~aDllLV 332 (396)
...+|+||.|||.|||+||||||++|.+.+ .+.+.+++||++||
T Consensus 160 -----------------------------------~~~~P~C~~Cgg~lrP~IV~FGE~lp~~~~-~~~~~~~~aDlllv 203 (285)
T 3glr_A 160 -----------------------------------ADRVPRCPVCTGVVKPDIVFFGEPLPQRFL-LHVVDFPMADLLLI 203 (285)
T ss_dssp -----------------------------------TTCCCBCTTTCCBEEEEECCTTSBCCGGGG-GHHHHHHHCSEEEE
T ss_pred -----------------------------------cCCCCCCCCCCCccCCcEEEeCCcCCHHHH-HHHHHHhcCCEEEE
Confidence 125799999999999999999999998766 45778899999999
Q ss_pred EccCcchhhHHHHHHHHHHCCCeEEEEcCCCCC----CCCcccEEEeCcHHHHHHHHHHhCCC
Q 016025 333 LGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETR----ADDLTTLKISARLGEILPRVLDVGSL 391 (396)
Q Consensus 333 vGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~~t~----~d~~a~l~I~~~a~evL~~L~~~~~l 391 (396)
|||||+|+|++.|+..+ +.|+++|+||++++. .+..+|+.+.++|++++++|++.+|.
T Consensus 204 iGTSl~V~Paa~l~~~~-~~~~~~v~IN~~~~~~~~~~~~~~d~~~~g~~~~~~~~L~~~lgw 265 (285)
T 3glr_A 204 LGTSLEVEPFASLTEAV-RSSVPRLLINRDLVGPLAWHPRSRDVAQLGDVVHGVESLVELLGW 265 (285)
T ss_dssp ESCCCCEETTGGGGGSS-CTTSCEEEEESSCCTHHHHSCCTTEEEEESCHHHHHHHHHHHHTC
T ss_pred eCCCCccccHHHHHHHH-hCCCcEEEECCCCcCccccCCCCccEEEcCCHHHHHHHHHHHhCC
Confidence 99999999999999754 457899999999985 56789999999999999999998874
No 10
>2hjh_A NAD-dependent histone deacetylase SIR2; protein, sirtuin, acetyl-ADP-ribose, nicotinamide, hydrolase; HET: XYQ; 1.85A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.8e-59 Score=463.91 Aligned_cols=266 Identities=24% Similarity=0.334 Sum_probs=210.1
Q ss_pred cchHHHHhcCCcEEEEECCcccccCCCCCcCCCCcCccCC-----CC---CCChHHHhhchhhHHHHHHHHHhhhhhccc
Q 016025 106 PPSIEDINQFAKLIVLTGAGISTECGIPDYRSPNGAYSSG-----FK---PITHQQFVRSSRARRRYWARSYAGWRRFMA 177 (396)
Q Consensus 106 ~~~~~~i~~ak~IVvlTGAGISaaSGIPdFRs~~Gl~~~~-----~~---p~~~~~f~~~~~~~~~~w~~~~~~~~~~~~ 177 (396)
..+.++|++|++|||+|||||||+||||||||++|+|+.. +. .++++.|..+|..+|.|| .......
T Consensus 37 ~~l~~~l~~a~~IvvlTGAGISt~SGIPdFR~~~Glw~~~~~~~l~~p~~~~~~~~F~~~P~~f~~~~-----~~~~~~~ 111 (354)
T 2hjh_A 37 DHFIQKLHTARKILVLTGAGVSTSLGIPDFRSSEGFYSKIKHLGLDDPQDVFNYNIFMHDPSVFYNIA-----NMVLPPE 111 (354)
T ss_dssp HHHHHHHHHCSSEEEEECGGGGGGGTCCCSSSTTSHHHHTGGGCCSSGGGGGBHHHHHHCTHHHHHHG-----GGGCCCC
T ss_pred HHHHHHHHhCCcEEEEECchhhHhhCCCcccCcchHHHHHHhhcCCCHHHhCCHHHHhcCHHHHHHHH-----HHHcccc
Confidence 3467889999999999999999999999999999999852 22 357778888887544333 2112236
Q ss_pred CCCCHHHHHHHHHHHhCCCceeeecCccchHhhhCCC--c-eeeccccceeeeCCCCcccchhhHHHHHHhhChhHHHHH
Q 016025 178 AQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSN--P-LELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAI 254 (396)
Q Consensus 178 a~Pn~~H~aLa~Le~~g~l~~VITQNIDgLh~kAG~~--~-iElHGsl~~~~C~~C~~~~~~~~~~~~l~~~np~~~~~~ 254 (396)
++||++|++|++|+++|++.+||||||||||++||++ + +|+||+++.++|..|++.++++.+.+.+...+
T Consensus 112 ~~Pn~~H~aLa~Le~~g~l~~viTQNVDgLh~rAG~~~~~vielHGsl~~~~C~~C~~~~~~~~~~~~~~~~~------- 184 (354)
T 2hjh_A 112 KIYSPLHSFIKMLQMKGKLLRNYTQNIDNLESYAGISTDKLVQCHGSFATATCVTCHWNLPGERIFNKIRNLE------- 184 (354)
T ss_dssp SCCCHHHHHHHHHHHTTCEEEEEECCCSCHHHHTTCCTTTEEETTEEEEEEEETTTCCEEEGGGGHHHHHTTC-------
T ss_pred CCCCHHHHHHHHHHHcCCceEEEecccCcHHHHcCCCccCEEEecCCcCccccCCCCCcCCHHHHHHHhhccC-------
Confidence 7899999999999999999999999999999999985 4 99999999999999999998877665553322
Q ss_pred hhhcCCCCCCCCCcC--------cccCCC-CCcccccccccccCCCCcCCCCCCcccCcEEEcCCCCCHHHHHHHHHHHh
Q 016025 255 ESLDYGSPGSDRSFG--------MKQRPD-GDIEIDEKFWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAK 325 (396)
Q Consensus 255 ~~l~~g~p~~~~s~~--------~~~~pd-~d~~i~~~~~~~~~~iP~Cp~Cgg~LRP~VVlFGE~lp~~~~~~a~~~~~ 325 (396)
++.+..++ +...++ ++..+.... ....+.|..|||.|||+||||||.+|.+.++.+.++++
T Consensus 185 -------~P~Cp~C~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~c~g~lrPdVV~FGE~lp~~~~~~a~~~~~ 254 (354)
T 2hjh_A 185 -------LPLCPYCYKKRREYFPEGYNNKVGVAASQGSM---SERPPYILNSYGVLKPDITFFGEALPNKFHKSIREDIL 254 (354)
T ss_dssp -------CCBCTTTHHHHHHHCCC--------------------CCTTSCTTTTBEEEEECCBTSBCCHHHHHHHHHHTT
T ss_pred -------CCcCcccccccccccccccccccccccccccc---ccccccccccCCeeCCChhhccccCCHHHHHHHHHHHh
Confidence 11111111 111111 111111110 11356799999999999999999999998999999999
Q ss_pred hCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCCCCCCCcccEEEeCcHHHHHHHHHHhCCCCCCC
Q 016025 326 ECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVLDVGSLSIPA 395 (396)
Q Consensus 326 ~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~~t~~d~~a~l~I~~~a~evL~~L~~~~~l~~p~ 395 (396)
+||++|||||||+|+|+++|+..+ +.|+++|+||++++..+ .++++|.++|+++|++|++.+|.+||.
T Consensus 255 ~aDllLviGTSL~V~Paa~lv~~~-~~~~~~v~IN~~~t~~~-~~dl~i~g~~~~vl~~L~~~lgw~~p~ 322 (354)
T 2hjh_A 255 ECDLLICIGTSLKVAPVSEIVNMV-PSHVPQVLINRDPVKHA-EFDLSLLGYCDDIAAMVAQKCGWTIPH 322 (354)
T ss_dssp TCCEEEEESCCCCEETGGGHHHHS-CTTSCEEEEESSCCTTS-CCSEEEESCHHHHHHHHHHHHTCCCCS
T ss_pred hCCEEEEECcCCCchhHHHHHHHH-hcCCcEEEEcCCCCCCC-CcCEEEeCCHHHHHHHHHHHcCCCCch
Confidence 999999999999999999999876 45889999999999864 589999999999999999999999994
No 11
>3pki_A NAD-dependent deacetylase sirtuin-6; ADP ribose, structural genomics, structural genomics consortium, SGC, hydrolase; HET: AR6; 2.04A {Homo sapiens} PDB: 3pkj_A*
Probab=100.00 E-value=9.4e-60 Score=466.52 Aligned_cols=236 Identities=30% Similarity=0.505 Sum_probs=196.9
Q ss_pred hHHHHhcCCcEEEEECCcccccCCCCCcCCCCcCccCCCCCCChHHHhhchhhHHHHHHHHHhhhhhcccCCCCHHHHHH
Q 016025 108 SIEDINQFAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVRSSRARRRYWARSYAGWRRFMAAQPNPAHFAL 187 (396)
Q Consensus 108 ~~~~i~~ak~IVvlTGAGISaaSGIPdFRs~~Gl~~~~~~p~~~~~f~~~~~~~~~~w~~~~~~~~~~~~a~Pn~~H~aL 187 (396)
+.++|++|++|||+|||||||+|||||||+++|+|+.. .+..+|. |+ ..+.+++||.+|++|
T Consensus 37 la~~i~~a~~iVvlTGAGISteSGIPDFR~~~Glw~~~-------~~~~~p~----~~-------~~f~~a~Pn~~H~aL 98 (355)
T 3pki_A 37 LARLVWQSSSVVFHTGAGISTASGIPDFRGPHGVWTME-------ERGLAPK----FD-------TTFESARPTQTHMAL 98 (355)
T ss_dssp HHHHHHHCSSEEEEECGGGSGGGTCCCSSSTTCHHHHH-------HTTCCCC----CS-------SCTTTCCCCHHHHHH
T ss_pred HHHHHHhCCCEEEEeccccchhhCCCccccCCCccchh-------hccCChH----HH-------HHHhhCCCCHHHHHH
Confidence 45778899999999999999999999999999999731 1111121 10 123478999999999
Q ss_pred HHHHHhCCCceeeecCccchHhhhCCC--c-eeeccccceeeeCCCCcccchhhHHHHHHhhChhHHHHHhhhcCCCCCC
Q 016025 188 ASLEKAGRIDCMITQNVDRLHHRAGSN--P-LELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGS 264 (396)
Q Consensus 188 a~Le~~g~l~~VITQNIDgLh~kAG~~--~-iElHGsl~~~~C~~C~~~~~~~~~~~~l~~~np~~~~~~~~l~~g~p~~ 264 (396)
++|+++|++.+||||||||||++||++ + +|+||++++.+|..|++.|.++.+...
T Consensus 99 a~Le~~g~l~~viTQNIDgLh~rAG~~~~~VieLHGsl~~~~C~~C~~~~~~~~~~~~---------------------- 156 (355)
T 3pki_A 99 VQLERVGLLRFLVSQNVDGLHVRSGFPRDKLAELHGNMFVEECAKCKTQYVRDTVVGT---------------------- 156 (355)
T ss_dssp HHHHHTTCCSEEEECCCSCHHHHEEEEGGGEEETTCCTTEEEETTTCCEEEBSSCCSC----------------------
T ss_pred HHHHHcCCCcEEEEecccchHhhcCCCcccEEEeCCCCCceeeCCCCCccchHHhhhh----------------------
Confidence 999999999999999999999999994 4 999999999999999998876432100
Q ss_pred CCCcCcccCCCCCcccccccccccCCCCcCCCCCCcccCcEEEcCCCCCHHHHHHHHHHHhhCCeEEEEccCcchhhHHH
Q 016025 265 DRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSLMTMSAYR 344 (396)
Q Consensus 265 ~~s~~~~~~pd~d~~i~~~~~~~~~~iP~Cp~Cgg~LRP~VVlFGE~lp~~~~~~a~~~~~~aDllLVvGTSl~V~pa~~ 344 (396)
+...+++ ...+ ....+.|+.|||.|||+||||||++|.+.++.|.+++++||++|||||||+|+|+++
T Consensus 157 -----~~~~~~~--~~C~-----~~~~~~~~~CgG~LRPdVV~FGE~lP~~~~~~A~~~~~~aDllLViGTSL~V~Paa~ 224 (355)
T 3pki_A 157 -----MGLKATG--RLCT-----VAKARGLRACRGELRDTILDWEDSLPDRDLALADEASRNADLSITLGTSLQIRPSGN 224 (355)
T ss_dssp -----CSSCEEE--EECC-----CCCBTTBCCCCCEEEECCCCTTSCCCHHHHHHHHHHHHHCSEEEEESCCCCSTTGGG
T ss_pred -----cccCCCC--Cccc-----cccccccccCCCccCCCEEECCCcCCHHHHHHHHHHHhcCCEEEEEeeCCCchhhhh
Confidence 0000000 0000 002345789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCeEEEEcCCCCCCCCcccEEEeCcHHHHHHHHHHhCCCCCCC
Q 016025 345 LVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVLDVGSLSIPA 395 (396)
Q Consensus 345 Lv~~a~~~g~~lIiIN~~~t~~d~~a~l~I~~~a~evL~~L~~~~~l~~p~ 395 (396)
|+..++++|+++|+||+++|+.|..++++|+++|+++|++|++.||++||+
T Consensus 225 Lp~~a~~~G~~vviIN~~pT~~d~~adl~i~g~a~evl~~L~~~Lg~~iP~ 275 (355)
T 3pki_A 225 LPLATKRRGGRLVIVNLQPTKHDRHADLRIHGYVDEVMTRLMEHLGLEIPA 275 (355)
T ss_dssp TTHHHHHTTCEEEEECSSCCTTGGGCSEEECSCHHHHHHHHHHHTTCCCCC
T ss_pred hHHHHHhcCCEEEEECCCCCCCCCccCEEEeCCHHHHHHHHHHHhCCCCCC
Confidence 999999999999999999999999999999999999999999999999996
No 12
>4iao_A NAD-dependent histone deacetylase SIR2; protein complex, deacetylase, nucleus, hydrolase-trans complex; HET: APR; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-58 Score=471.63 Aligned_cols=266 Identities=24% Similarity=0.361 Sum_probs=212.2
Q ss_pred cchHHHHhcCCcEEEEECCcccccCCCCCcCCCCcCccCC-----CCC---CChHHHhhchhhHHHHHHHHHhhhhhccc
Q 016025 106 PPSIEDINQFAKLIVLTGAGISTECGIPDYRSPNGAYSSG-----FKP---ITHQQFVRSSRARRRYWARSYAGWRRFMA 177 (396)
Q Consensus 106 ~~~~~~i~~ak~IVvlTGAGISaaSGIPdFRs~~Gl~~~~-----~~p---~~~~~f~~~~~~~~~~w~~~~~~~~~~~~ 177 (396)
..+.++|++|++|||+|||||||+||||||||++|+|+.. +.| ++.+.|.++|.. ||. ++.......
T Consensus 175 ~~l~~~L~~ak~IVVLTGAGISTeSGIPDFRs~~GLw~~~~~~gl~~Pe~v~s~~~F~~dP~~---Fy~--~~r~~~~~~ 249 (492)
T 4iao_A 175 DHFIQKLHTARKILVLTGAGVSTSLGIPDFRSSEGFYSKIKHLGLDDPQDVFNYNIFMHDPSV---FYN--IANMVLPPE 249 (492)
T ss_dssp HHHHHHHHHCSCEEEEECGGGGGGGTCCCSSSTTSHHHHHHTSCCSCGGGGGBHHHHHHCHHH---HHH--HGGGGCCCS
T ss_pred HHHHHHHHhCCcEEEEeCcccccccCCccccCchHHHHhhhhcCCCCHHHhcCHHHHhhChHH---HHH--HHHHhhCCc
Confidence 3467889999999999999999999999999999999741 123 467788888875 443 222222236
Q ss_pred CCCCHHHHHHHHHHHhCCCceeeecCccchHhhhCCC--c-eeeccccceeeeCCCCcccchhhHHHHHHhhChhHHHHH
Q 016025 178 AQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSN--P-LELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAI 254 (396)
Q Consensus 178 a~Pn~~H~aLa~Le~~g~l~~VITQNIDgLh~kAG~~--~-iElHGsl~~~~C~~C~~~~~~~~~~~~l~~~np~~~~~~ 254 (396)
++||++|++|++|++.|++.+||||||||||++||++ + +|+||++++.+|..|++.++++.+.+.+...+
T Consensus 250 ~~Pn~aH~aLa~Le~~G~l~~VITQNIDgLHqrAG~~s~~ViELHGsl~~~~C~~Cg~~~~~e~i~~~i~~~~------- 322 (492)
T 4iao_A 250 KIYSPLHSFIKMLQMKGKLLRNYTQNIDNLESYAGISTDKLVQCHGSFATATCVTCHWNLPGERIFNKIRNLE------- 322 (492)
T ss_dssp SCCCHHHHHHHHHHHTTCEEEEEECCCSCHHHHTTCCTTTEEETTCCTTEEEETTTCCEEEGGGGHHHHHTTC-------
T ss_pred CCCCHHHHHHHHHHHCCCCceeEeccccchHhhcCCChhhEEeecCccceeecCCCCCcCCHHHHHHHHhccC-------
Confidence 7899999999999999999999999999999999984 4 99999999999999999998877665543322
Q ss_pred hhhcCCCCCCCCCcC---------cccCCCCCcccccccccccCCCCcCCCCCCcccCcEEEcCCCCCHHHHHHHHHHHh
Q 016025 255 ESLDYGSPGSDRSFG---------MKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAK 325 (396)
Q Consensus 255 ~~l~~g~p~~~~s~~---------~~~~pd~d~~i~~~~~~~~~~iP~Cp~Cgg~LRP~VVlFGE~lp~~~~~~a~~~~~ 325 (396)
++.|..++ ....++++.+..+. .....|.|+.|||.|||+||||||++|.+.++.+.+.++
T Consensus 323 -------~P~Cp~Cg~~~~~~~~~~~~~~dg~~~~~~~---~~~~~~~c~~cgG~LRPdIVfFGE~LP~~~~~~a~~~~~ 392 (492)
T 4iao_A 323 -------LPLCPYCYKKRREYFPEGYNNKVGVAASQGS---MSERPPYILNSYGVLKPDITFFGEALPNKFHKSIREDIL 392 (492)
T ss_dssp -------CCBCTTTHHHHHHHSTTCCCCC--------C---CTTCCTTCCTTTTBEEESSCCBTSBCCHHHHHHHHHHTT
T ss_pred -------CCCCccccccccccccccccccccccccccc---ccccccccccCCCcCCCCEEECCCCCCHHHHHHHHHHHh
Confidence 11111111 01233444433221 123468899999999999999999999998999999999
Q ss_pred hCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCCCCCCCcccEEEeCcHHHHHHHHHHhCCCCCCC
Q 016025 326 ECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVLDVGSLSIPA 395 (396)
Q Consensus 326 ~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~~t~~d~~a~l~I~~~a~evL~~L~~~~~l~~p~ 395 (396)
+||++|||||||+|+|+++|+..++ .++++|+||++++.. ..+|+.|.|+|+++++.|++.||.+||.
T Consensus 393 ~aDLlLVIGTSL~VyPaA~Lv~~a~-~~~p~ViIN~ept~~-~~~Dl~l~G~cdevv~~L~~~LGw~ip~ 460 (492)
T 4iao_A 393 ECDLLICIGTSLKVAPVSEIVNMVP-SHVPQVLINRDPVKH-AEFDLSLLGYCDDIAAMVAQKCGWTIPH 460 (492)
T ss_dssp TCSEEEEESCCCCEETGGGHHHHSB-TTSCEEEEESSCCTT-SCCSEEEESCHHHHHHHHHHHTTCCCCS
T ss_pred hCCEEEEeccCCCccchhhHHHHHh-cCCcEEEEcCCCCCC-CCccEEEeCCHHHHHHHHHHHhCCCCCh
Confidence 9999999999999999999998764 678999999999984 4689999999999999999999999995
No 13
>1j8f_A SIRT2, sirtuin 2, isoform 1, silencing INFO; gene regulation, transferase; 1.70A {Homo sapiens} SCOP: c.31.1.5
Probab=100.00 E-value=3.8e-58 Score=454.34 Aligned_cols=237 Identities=25% Similarity=0.410 Sum_probs=200.7
Q ss_pred cchHHHHhc--CCcEEEEECCcccccCCCCCcCCC-CcCccCC--CC---C---CChHHHhhchhhHHHHHHHHHhhhhh
Q 016025 106 PPSIEDINQ--FAKLIVLTGAGISTECGIPDYRSP-NGAYSSG--FK---P---ITHQQFVRSSRARRRYWARSYAGWRR 174 (396)
Q Consensus 106 ~~~~~~i~~--ak~IVvlTGAGISaaSGIPdFRs~-~Gl~~~~--~~---p---~~~~~f~~~~~~~~~~w~~~~~~~~~ 174 (396)
..+.++|++ |++|||+|||||||+||||||||+ +|+|+.. |. | ++...|.++|..+|.||... .
T Consensus 32 ~~l~~~i~~~~a~~ivvltGAGiSt~SGIPdfR~~~~Glw~~~~~~~l~~p~~~~~~~~f~~~p~~f~~~~r~~-----~ 106 (323)
T 1j8f_A 32 EGVARYMQSERCRRVICLVGAGISTSAGIPDFRSPSTGLYDNLEKYHLPYPEAIFEISYFKKHPEPFFALAKEL-----Y 106 (323)
T ss_dssp HHHHHHHHSTTCCCEEEEECGGGTGGGTCCCTTCSCSTTSTTTTTTCCSSGGGGGBHHHHHHCCHHHHHHHHHH-----S
T ss_pred HHHHHHHHhcCCCcEEEEecchhhHhhCCCcccCCCccHHHHhhhcCCCCHHHHcCHHHHhcCHHHHHHHHHHH-----h
Confidence 345788986 899999999999999999999999 4999852 21 2 35556778887666655321 1
Q ss_pred cccCCCCHHHHHHHHHHHhCCCceeeecCccchHhhhCCC--c-eeeccccceeeeCC--CCcccchhhHHHHHHhhChh
Q 016025 175 FMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSN--P-LELHGTVYTVVCLD--CGFSFCRDLFQDQVKALNPK 249 (396)
Q Consensus 175 ~~~a~Pn~~H~aLa~Le~~g~l~~VITQNIDgLh~kAG~~--~-iElHGsl~~~~C~~--C~~~~~~~~~~~~l~~~np~ 249 (396)
..+++||.+|++|++|+++|++++||||||||||++||++ + +|+||++++++|++ |++.|+++.+.+.+.
T Consensus 107 ~~~a~Pn~~H~aLa~L~~~g~~~~viTQNIDgLh~~AG~~~~~VielHGs~~~~~C~~~~C~~~~~~~~~~~~i~----- 181 (323)
T 1j8f_A 107 PGQFKPTICHYFMRLLKDKGLLLRCYTQNIDTLERIAGLEQEDLVEAHGTFYTSHCVSASCRHEYPLSWMKEKIF----- 181 (323)
T ss_dssp SSSCCCCHHHHHHHHHHHTTCEEEEEECCCSCHHHHTTCCGGGEEETTEEEEEEEESCTTTCCEECHHHHHHHHH-----
T ss_pred hCcCCCCHHHHHHHHHHhcCCCcEEEeecccchHHHcCCCcccEEEeeCCcceeecCCCccCccccHHHHHHhhc-----
Confidence 2479999999999999999999999999999999999985 3 99999999999999 999887654322110
Q ss_pred HHHHHhhhcCCCCCCCCCcCcccCCCCCcccccccccccCCCCcCCCCCCcccCcEEEcCCCCCHHHHHHHHHHHhhCCe
Q 016025 250 WAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDA 329 (396)
Q Consensus 250 ~~~~~~~l~~g~p~~~~s~~~~~~pd~d~~i~~~~~~~~~~iP~Cp~Cgg~LRP~VVlFGE~lp~~~~~~a~~~~~~aDl 329 (396)
...+|+||.|||.|||+||||||++|++.++.+.+++++||+
T Consensus 182 --------------------------------------~~~~P~C~~Cgg~lrP~VV~FGE~lp~~~~~~a~~~~~~aDl 223 (323)
T 1j8f_A 182 --------------------------------------SEVTPKCEDCQSLVKPDIVFFGESLPARFFSCMQSDFLKVDL 223 (323)
T ss_dssp --------------------------------------TTCCCBCTTTCCBEEEEECCBTSCCCHHHHHHHHHGGGSCSE
T ss_pred --------------------------------------cCCCCCCcCCCCccCCCEEecCCcCCHHHHHHHHHHHhCCCE
Confidence 124799999999999999999999999999999999999999
Q ss_pred EEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCCCCCCC--------------------cccEEEeCcHHHHHHHHHHhC
Q 016025 330 FLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--------------------LTTLKISARLGEILPRVLDVG 389 (396)
Q Consensus 330 lLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~~t~~d~--------------------~a~l~I~~~a~evL~~L~~~~ 389 (396)
+|||||||+|+|+++|+..+++ ++++++||++++..++ .+++.|.++|+++|++|++.+
T Consensus 224 llviGTSl~V~P~a~l~~~~~~-~~~~v~IN~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~gd~~~~l~~L~~~l 302 (323)
T 1j8f_A 224 LLVMGTSLQVQPFASLISKAPL-STPRLLINKEKAGQSDPFLGMIMGLGGGMDFDSKKAYRDVAWLGECDQGCLALAELL 302 (323)
T ss_dssp EEEESSCSCSHHHHHHHTTSCT-TCCEEEEESSCCCCCCHHHHHHHHHHTCCCSSSTTCCSEEEEESCHHHHHHHHHHHT
T ss_pred EEEEeeCcccHHHHHHHHHHHc-CCcEEEEeCCCCCCCcccccccccccccccccccccceeEEEeCCHHHHHHHHHHHc
Confidence 9999999999999999988765 4567899999998765 378999999999999999998
Q ss_pred CC
Q 016025 390 SL 391 (396)
Q Consensus 390 ~l 391 (396)
|.
T Consensus 303 gw 304 (323)
T 1j8f_A 303 GW 304 (323)
T ss_dssp TC
T ss_pred CC
Confidence 85
No 14
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5
Probab=100.00 E-value=2.1e-58 Score=461.59 Aligned_cols=239 Identities=24% Similarity=0.409 Sum_probs=184.7
Q ss_pred hHHHHhc--CCcEEEEECCcccccCCCCCcCCCC-cCccCC--CC---C---CChHHHhhchhhHHHHHHHHHhhhhhcc
Q 016025 108 SIEDINQ--FAKLIVLTGAGISTECGIPDYRSPN-GAYSSG--FK---P---ITHQQFVRSSRARRRYWARSYAGWRRFM 176 (396)
Q Consensus 108 ~~~~i~~--ak~IVvlTGAGISaaSGIPdFRs~~-Gl~~~~--~~---p---~~~~~f~~~~~~~~~~w~~~~~~~~~~~ 176 (396)
+.++|++ |++|||+|||||||+||||||||++ |+|... |. | ++...|.++|..+|.||.+ ....
T Consensus 19 l~~~i~~~~a~~IVvlTGAGISteSGIPdFR~~~~Glw~~~~~~~l~~pe~~~s~~~f~~~P~~f~~~~~~-----~~~~ 93 (361)
T 1q14_A 19 IAAHMKSNPNAKVIFMVGAGISTSCGIPDFRSPGTGLYHNLARLKLPYPEAVFDVDFFQSDPLPFYTLAKE-----LYPG 93 (361)
T ss_dssp HHHHHHTSTTCCEEEEECGGGTGGGC--------------CCCCCCSSGGGGGBHHHHHHCCHHHHHHHTT-----TSCC
T ss_pred HHHHHHhccCCcEEEEeCcccchhcCCcccccCcchhhhcccccCCCCHHHhcCHHHHhcCHHHHHHHHHH-----HhhC
Confidence 5678999 9999999999999999999999995 999841 21 1 3455678888765555432 2234
Q ss_pred cCCCCHHHHHHHHHHHhCCCceeeecCccchHhhhCCC--c-eeeccccceeeeCCCCcccchhhHHHHHHhhChhHHHH
Q 016025 177 AAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSN--P-LELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEA 253 (396)
Q Consensus 177 ~a~Pn~~H~aLa~Le~~g~l~~VITQNIDgLh~kAG~~--~-iElHGsl~~~~C~~C~~~~~~~~~~~~l~~~np~~~~~ 253 (396)
.++||.+|++|++|++.|++++||||||||||++||++ + +|+||+++.++|..|++.|+++.+...+.
T Consensus 94 ~a~Pn~~H~aLa~Le~~g~~~~ViTQNVDgLh~rAG~~~~~VielHGsl~~~~C~~C~~~~~~~~~~~~~~--------- 164 (361)
T 1q14_A 94 NFRPSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHCHCIGCGKVYPPQVFKSKLA--------- 164 (361)
T ss_dssp CCCCCHHHHHHHHHHHTTCEEEEEECCCSCHHHHTTCCGGGEEETTEEEEEEEETTTCCEECTHHHHHHTT---------
T ss_pred cCCCCHHHHHHHHHHhcCCCcEEEecccchhHhHcCCCcceEEeccccccccCcCCCCccCcHHHHHHHHh---------
Confidence 79999999999999999999999999999999999996 3 99999999999999999887755432110
Q ss_pred HhhhcCCCCCCCCCcCcccCCCCCcccccccccccCCCCcCCCCCCcccCcEEEcCCCCCHHHHHHHHH-----------
Q 016025 254 IESLDYGSPGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAME----------- 322 (396)
Q Consensus 254 ~~~l~~g~p~~~~s~~~~~~pd~d~~i~~~~~~~~~~iP~Cp~Cgg~LRP~VVlFGE~lp~~~~~~a~~----------- 322 (396)
. .....+|+||.|||.|||+||||||++|.+.++.+.+
T Consensus 165 -----~--------------------------~~~~~~P~Cp~Cgg~lrP~VV~FGE~lp~~~~~~~~~a~~~l~~~i~~ 213 (361)
T 1q14_A 165 -----E--------------------------HPIKDFVKCDVCGELVKPAIVFFGEDLPDSFSETWLNDSEWLREKITT 213 (361)
T ss_dssp -----S--------------------------SSCSCCCBCTTTCCBEEEEECCBTSCCCHHHHHHHHHHHHHHHHC---
T ss_pred -----h--------------------------cccCCCCCCcCCCCEeCCCcccccccCCHHHHHHHHHHHHhhhhcchh
Confidence 0 0012479999999999999999999999987665554
Q ss_pred --HHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCCCC----CCCcccEEEeCcHHHHHHHHHHhCCCC
Q 016025 323 --AAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETR----ADDLTTLKISARLGEILPRVLDVGSLS 392 (396)
Q Consensus 323 --~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~~t~----~d~~a~l~I~~~a~evL~~L~~~~~l~ 392 (396)
.+.+||++|||||||+|+|+++|+..++ .|+++|+||++++. .+..++++|.++|+++|++|++.+|.+
T Consensus 214 ~~~~~~aDllLviGTSl~V~Paa~l~~~~~-~g~~~v~IN~~~t~~~~~~~~~~d~~i~g~~~evl~~L~~~Lg~~ 288 (361)
T 1q14_A 214 SGKHPQQPLVIVVGTSLAVYPFASLPEEIP-RKVKRVLCNLETVGDFKANKRPTDLIVHQYSDEFAEQLVEELGWQ 288 (361)
T ss_dssp -----CCCEEEEESCCCCSTTGGGHHHHSC-TTSEEEEESSSCCHHHHHTCCTTCEEECSCHHHHHHHHHHHHTCH
T ss_pred hhhhccCCEEEEECCCCCchhHHHHHHHHh-cCCeEEEEeCCCccccccCcccccEEEeCCHHHHHHHHHHHcCCh
Confidence 4669999999999999999999998875 58999999999985 245689999999999999999988763
No 15
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=91.83 E-value=0.39 Score=50.04 Aligned_cols=67 Identities=12% Similarity=0.029 Sum_probs=50.6
Q ss_pred HHHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCCCCCCC--cccEEEeCcHHHHHHHHHHhCC
Q 016025 322 EAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVGS 390 (396)
Q Consensus 322 ~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~~t~~d~--~a~l~I~~~a~evL~~L~~~~~ 390 (396)
..+.+||++|.+|+.+.......+... ..++++|.|+.++...+. ..++.|.+|+.++|..|.+.+.
T Consensus 285 ~~~~~aDlvl~~G~~~~~~~~~~~~~~--~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 353 (578)
T 3lq1_A 285 IDKLTPEVVIRFGSMPVSKPLKNWLEQ--LSDIRFYVVDPGAAWKDPIKAVTDMIHCDERFLLDIMQQNMP 353 (578)
T ss_dssp HHHTCCSEEEEESSCCSCHHHHHHHHH--CCSSEEEEECTTCCCCCTTCCCSEEECSCHHHHHHHHHHHSC
T ss_pred cccCCCCEEEEeCCcccchhHHHHHhc--CCCCEEEEECCCCCcCCCCcCceEEEEeCHHHHHHHHHhhcc
Confidence 457799999999998754444444321 246899999999876654 4678999999999999987653
No 16
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=91.11 E-value=0.52 Score=48.98 Aligned_cols=68 Identities=4% Similarity=-0.026 Sum_probs=51.3
Q ss_pred HHHHHhhCCeEEEEccC-cchhhHHHHHHHHHHCCCeEEEEcCCCCCCCC--cccEEEeCcHHHHHHHHHHhCC
Q 016025 320 AMEAAKECDAFLVLGSS-LMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVGS 390 (396)
Q Consensus 320 a~~~~~~aDllLVvGTS-l~V~pa~~Lv~~a~~~g~~lIiIN~~~t~~d~--~a~l~I~~~a~evL~~L~~~~~ 390 (396)
+.+.++++|++|++|+. +.-.....+. . ..++++|.|+.++...+. ..++.|.+|+.++|..|.+.+.
T Consensus 281 ~~~~l~~aDlvl~iG~~~~~~~~~~~~~--~-~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 351 (573)
T 2iht_A 281 LQTMFAPVDLVLTVGYDYAEDLRPSMWQ--K-GIEKKTVRISPTVNPIPRVYRPDVDVVTDVLAFVEHFETATA 351 (573)
T ss_dssp HHHHHTTCCEEEEETCCGGGCCCHHHHC--C-SSCCEEEEEESSCCSCTTTCCCSEEEESCHHHHHHHHHHHTT
T ss_pred HHHHHhhCCEEEEECCCccccccccccC--C-CCCCeEEEEeCCHHHhCCCcCCCeeEeCCHHHHHHHHHHhcc
Confidence 44567899999999998 7544333332 1 146789999999877665 4678999999999999987653
No 17
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=90.06 E-value=0.52 Score=48.81 Aligned_cols=66 Identities=21% Similarity=0.162 Sum_probs=48.7
Q ss_pred HHHHHHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCCCCCCC--cccEEEeCcHHHHHHHHH
Q 016025 319 KAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVL 386 (396)
Q Consensus 319 ~a~~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~~t~~d~--~a~l~I~~~a~evL~~L~ 386 (396)
.+.+.+++||++|++|+.+.-.....+.... ...++|.|+.++...+. ..++.|.+|+.++|..|.
T Consensus 271 ~~~~~~~~aDlvl~iG~~~~~~~~~~~~~~~--~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~l~ 338 (556)
T 3hww_A 271 KATSELQQAQIVVQLGSSLTGKRLLQWQASC--EPEEYWIVDDIEGRLDPAHHRGRRLIANIADWLELHP 338 (556)
T ss_dssp HHHHHHTTCSEEEEESBCCCCHHHHHHHHHC--CCSEEEEEESSCSCCCTTCCSEEEEESCHHHHHHHSC
T ss_pred hhhhcccCCCEEEEcCCCcccHHHHHHHhcC--CCCeEEEECCCCccCCCCCCceEEEEcCHHHHHHhcc
Confidence 3556788999999999999654444443221 23489999998877665 467889999999998753
No 18
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=89.89 E-value=0.54 Score=48.85 Aligned_cols=66 Identities=9% Similarity=0.104 Sum_probs=49.2
Q ss_pred HHHHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCCCCCCC--cccEEEeCcHHHHHHHHHHhCC
Q 016025 321 MEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVGS 390 (396)
Q Consensus 321 ~~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~~t~~d~--~a~l~I~~~a~evL~~L~~~~~ 390 (396)
.+.++++|++|.+|+.........+. ..++++|.|+.++...+. ..++.|.+|+.++|..|.+.+.
T Consensus 269 ~~~l~~aDlvl~lG~~~~~~~~~~~~----~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 336 (566)
T 1ozh_A 269 DRLLQLADLVICIGYSPVEYEPAMWN----SGNATLVHIDVLPAYEERNYTPDVELVGDIAGTLNKLAQNID 336 (566)
T ss_dssp HHHHHHCSEEEEESCCGGGSCGGGTC----CSCSEEEEEESSCCCCBTTBCCSEEEESCHHHHHHHHHHTCC
T ss_pred HHHHHhCCEEEEECCCCCcCCccccC----CCCCcEEEEeCCHHHhCCCCCCCEEEEeCHHHHHHHHHHhcc
Confidence 45677899999999965443322221 236799999999877655 4688899999999999988654
No 19
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=89.64 E-value=0.55 Score=48.55 Aligned_cols=64 Identities=9% Similarity=0.202 Sum_probs=49.2
Q ss_pred HHHHHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCCCCCCC--cccEEEeCcHHHHHHHHHHhCC
Q 016025 320 AMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVGS 390 (396)
Q Consensus 320 a~~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~~t~~d~--~a~l~I~~~a~evL~~L~~~~~ 390 (396)
+.+.+++||++|++|+.+....+ ...++++|.|+.++...+. ..++.|.+|+.++|..|.+.+.
T Consensus 259 ~~~~~~~aDlvl~iG~~~~~~~~-------~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 324 (549)
T 3eya_A 259 GFHTMMNADTLVLLGTQFPYRAF-------YPTDAKIIQIDINPASIGAHSKVDMALVGDIKSTLRALLPLVE 324 (549)
T ss_dssp HHHHHHHCSEEEEESCCCCCGGG-------SCSSSEEEEEESCGGGTTSSSCCSEEEECCHHHHHHHHGGGSC
T ss_pred HHHHHHhCCEEEEECCCCCcccc-------CCCCCeEEEEeCCHHHhCCCCCCCeEEEeCHHHHHHHHHHhcc
Confidence 44567899999999999864321 1246789999998876654 4678899999999999987654
No 20
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=89.62 E-value=0.86 Score=47.69 Aligned_cols=65 Identities=6% Similarity=0.100 Sum_probs=48.4
Q ss_pred HHHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCCCCCCC--cccEEEeCcHHHHHHHHHHhC
Q 016025 322 EAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVG 389 (396)
Q Consensus 322 ~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~~t~~d~--~a~l~I~~~a~evL~~L~~~~ 389 (396)
+.++ +|++|++|+.+.......+... ..+.++|.|+.++...+. ..++.|.+|+.++|..|.+.+
T Consensus 306 ~~~~-~Dlvl~iG~~~~~~~~~~~~~~--~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l 372 (604)
T 2x7j_A 306 RKLR-PDVVIRFGPMPVSKPVFLWLKD--DPTIQQIVIDEDGGWRDPTQASAHMIHCNASVFAEEIMAGL 372 (604)
T ss_dssp HHHC-CSEEEEESSCCSCHHHHHHHHH--CTTSEEEEECTTCCCCCTTSCCSEEECSCHHHHHHHHHHTS
T ss_pred hhcC-CCEEEEECCcCccHHHHHHHhh--CCCCeEEEECCCCCccCCCccceEEEEcCHHHHHHHHHHhh
Confidence 4455 8999999999865433333221 116789999999887765 467889999999999998866
No 21
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=89.44 E-value=0.35 Score=50.48 Aligned_cols=68 Identities=13% Similarity=0.151 Sum_probs=48.6
Q ss_pred HHHHHHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCCCCCCC--cccEEEeCcHHHHHHHHHHh
Q 016025 319 KAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDV 388 (396)
Q Consensus 319 ~a~~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~~t~~d~--~a~l~I~~~a~evL~~L~~~ 388 (396)
.+.+.++++|++|.+|+.+...-...+-.. ..++++|.|+.++...+. ..++.|.+|+.++|.+|.+.
T Consensus 271 ~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~--~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~ 340 (590)
T 1ybh_A 271 YANYAVEHSDLLLAFGVRFDDRVTGKLEAF--ASRAKIVHIDIDSAEIGKNKTPHVSVCGDVKLALQGMNKV 340 (590)
T ss_dssp HHHHHHHHCSEEEEESCCCCHHHHSSGGGT--TTTSEEEEEESCTTTTTSSSCCSEEEESCHHHHHHHHHHH
T ss_pred HHHHHHHhCCEEEEEcCCCCccccCccccc--CCCCeEEEEECCHHHhCCCcCCCeEEecCHHHHHHHHHHh
Confidence 345677899999999998853211111111 136789999999877665 56888999999999998764
No 22
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=89.36 E-value=0.57 Score=49.06 Aligned_cols=67 Identities=18% Similarity=0.214 Sum_probs=50.3
Q ss_pred HHHHHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCCCCCCC--cccEEEeCcHHHHHHHHHHhCC
Q 016025 320 AMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVGS 390 (396)
Q Consensus 320 a~~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~~t~~d~--~a~l~I~~~a~evL~~L~~~~~ 390 (396)
+.+.+++||++|++|+.+....+.. . ...++++|.|+.++...+. ..++.|.+|+.++|..|.+.+.
T Consensus 270 ~~~~l~~aDlvl~iG~~~~~~~~~~---~-~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 338 (603)
T 4feg_A 270 ANEALAQADVVLFVGNNYPFAEVSK---A-FKNTRYFLQIDIDPAKLGKRHKTDIAVLADAQKTLAAILAQVS 338 (603)
T ss_dssp HHHHHHHCSEEEEESCCCTTTTTTT---T-TTTCSEEEEEESCGGGTTSSSCCSEEEESCHHHHHHHHHHTCC
T ss_pred HHHHHHhCCEEEEECCCCCcccccc---c-CCCCCeEEEEeCCHHHhCCccCCCEEEEeCHHHHHHHHHHhhh
Confidence 4556789999999999986422110 0 1236789999999877654 4678999999999999988764
No 23
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=88.90 E-value=0.24 Score=51.47 Aligned_cols=69 Identities=9% Similarity=0.101 Sum_probs=48.0
Q ss_pred HHHHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCCCCCCC--cccEEEeCcHHHHHHHHHHhC
Q 016025 321 MEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVG 389 (396)
Q Consensus 321 ~~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~~t~~d~--~a~l~I~~~a~evL~~L~~~~ 389 (396)
.+.++++|++|++|+.+.-.............++++|.|+.++...+. ..++.|.+|+.++|..|.+.+
T Consensus 267 ~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~ii~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l 337 (568)
T 2c31_A 267 AFALAQCDVCVLIGARLNWLMQHGKGKTWGDELKKYVQIDIQANEMDSNQPIAAPVVGDIKSAVSLLRKAL 337 (568)
T ss_dssp HHHHHHCSEEEEESCCCSGGGGGGCSGGGTTSCCEEEEEESCGGGTTSSSCCSEEEESCHHHHHHHHHHHH
T ss_pred HhhhccCCEEEEECCCCccccccCcccccCCCCCeEEEEeCCHHHhcCCcCCCceeeCCHHHHHHHHHHhh
Confidence 346789999999999885322111000001136789999998876654 457889999999999998754
No 24
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=88.12 E-value=0.38 Score=50.23 Aligned_cols=67 Identities=18% Similarity=0.161 Sum_probs=49.3
Q ss_pred HHHHHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCCCCCCC--cccEEEeCcHHHHHHHHHHhC
Q 016025 320 AMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVG 389 (396)
Q Consensus 320 a~~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~~t~~d~--~a~l~I~~~a~evL~~L~~~~ 389 (396)
+.+.++++|++|++|+.+...... + .. ...++++|.|+.++...+. ..++.|.+|+.++|..|.+.+
T Consensus 265 ~~~~l~~aDlvl~iG~~~~~~~~~-~-~~-~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l 333 (589)
T 2pgn_A 265 ANDMMAAADFVLVLGSRLSDWGIA-Q-GY-ITKMPKFVHVDTDPAVLGTFYFPLLSVVADAKTFMEQLIEVL 333 (589)
T ss_dssp HHHHHHHCSEEEEESCCCCTTTTT-T-TT-TCCCCSEEEEESCGGGTTSSSCCSEEEECCHHHHHHHHHHHG
T ss_pred HHHHHhhCCEEEEECCCccccccc-c-cc-cCCCCeEEEEeCCHHHHCCCcCCCEEEEeCHHHHHHHHHHHh
Confidence 445678899999999988543322 1 11 1136789999998876655 468899999999999998755
No 25
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=87.55 E-value=0.65 Score=48.66 Aligned_cols=67 Identities=13% Similarity=0.192 Sum_probs=47.3
Q ss_pred HHHHHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCCCCCCC--cccEEEeCcHHHHHHHHHHh
Q 016025 320 AMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDV 388 (396)
Q Consensus 320 a~~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~~t~~d~--~a~l~I~~~a~evL~~L~~~ 388 (396)
+.+.++++|++|++|+.+.-.....+-... .+.++|.|+.++...+. ..++.|.+|+.++|..|.+.
T Consensus 287 ~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~--~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~ 355 (616)
T 2pan_A 287 GNATLLASDMVFGIGNRFANRHTGSVEKYT--EGRKIVHIDIEPTQIGRVLCPDLGIVSDAKAALTLLVEV 355 (616)
T ss_dssp HHHHHHHCSEEEEESCCCCHHHHSSHHHHH--TTCEEEEEESCGGGTTSSSCCSSCEECCHHHHHHHHHHH
T ss_pred HHHHHHhCCEEEEECCCCcccccCcccccC--CCCeEEEEeCCHHHhCCCCCCCeEEEcCHHHHHHHHHHH
Confidence 455678999999999988632111111111 36789999998866554 45677999999999998764
No 26
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=87.38 E-value=0.37 Score=49.91 Aligned_cols=67 Identities=12% Similarity=0.111 Sum_probs=47.3
Q ss_pred HHHHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCCCCCCC--cccEEEeCcHHHHHHHHHHhC
Q 016025 321 MEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVG 389 (396)
Q Consensus 321 ~~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~~t~~d~--~a~l~I~~~a~evL~~L~~~~ 389 (396)
.+.++++|++|++|+.+.-......... ..++++|.|+.++...+. ..++.|.+|+.++|.+|.+.+
T Consensus 265 ~~~l~~aDlvl~iG~~~~~~~~~~~~~~--~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l 333 (564)
T 2q28_A 265 SFALANADVVMLVGARLNWLLAHGKKGW--AADTQFIQLDIEPQEIDSNRPIAVPVVGDIASSMQGMLAEL 333 (564)
T ss_dssp HHHHHHCSEEEEESCCCSGGGGGGTTTS--CTTCEEEEEESCGGGTTSSSCCSEEEESCHHHHHHHHHHHH
T ss_pred HhHhhcCCEEEEECCccccccccccccc--CCCCeEEEEeCCHHHhcCCCCCCeEEEcCHHHHHHHHHHHh
Confidence 3467899999999998853221110000 136789999998876654 467889999999999987643
No 27
>1o97_D Electron transferring flavoprotein alpha-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 c.31.1.2 PDB: 1o95_D* 1o96_B* 1o94_D* 3clu_D* 3clt_D* 3clr_D* 3cls_D*
Probab=86.52 E-value=1.3 Score=43.01 Aligned_cols=59 Identities=17% Similarity=0.143 Sum_probs=46.1
Q ss_pred CCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCCC-CCCCcccEEEeCcHHHHHHHHHHhCC
Q 016025 327 CDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGET-RADDLTTLKISARLGEILPRVLDVGS 390 (396)
Q Consensus 327 aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~~t-~~d~~a~l~I~~~a~evL~~L~~~~~ 390 (396)
|+|.|-+|-|..+.=...| +.-..+|-||.++. ++-+.+|+-|-+|+-+++|+|.+.+.
T Consensus 260 ~~lYiA~GISGAiQHlaGm-----~~s~~IVAIN~D~~ApIF~~ADygiVgDl~~vvP~L~~~l~ 319 (320)
T 1o97_D 260 CKLYVAMGISGSIQHMAGM-----KHVPTIIAVNTDPGASIFTIAKYGIVADIFDIEEELKAQLA 319 (320)
T ss_dssp CSEEEEESCCCCHHHHHHH-----TTCSEEEEECSCTTCGGGGTCSEEECSCHHHHHHHHHHHC-
T ss_pred cceEEEEeccCcHHHHhhc-----ccCCEEEEEeCCCCCCcccccCeEEeeeHHHHHHHHHHHHh
Confidence 4999999999987633332 22345788999874 56779999999999999999998763
No 28
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=86.42 E-value=1.5 Score=45.63 Aligned_cols=67 Identities=13% Similarity=0.120 Sum_probs=50.0
Q ss_pred HHHHHHhhCCeEEEEccCcchhhH-HHHHHHHHHCCCeEEEEcCCCCCCCC--cccEEEeCcHHHHHHHHHHhCC
Q 016025 319 KAMEAAKECDAFLVLGSSLMTMSA-YRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVGS 390 (396)
Q Consensus 319 ~a~~~~~~aDllLVvGTSl~V~pa-~~Lv~~a~~~g~~lIiIN~~~t~~d~--~a~l~I~~~a~evL~~L~~~~~ 390 (396)
.+.+.++++|++|++|+.+..... ... . .+.++|.|+.++...+. ..++.|.+|+.++|..|.+.+.
T Consensus 262 ~~~~~l~~aDlvl~iG~~~~~~~~~~~~--~---~~~~~i~id~d~~~~~~~~~~~~~i~gd~~~~l~~L~~~l~ 331 (590)
T 1v5e_A 262 PANETILEADTVLFAGSNFPFSEVEGTF--R---NVDNFIQIDIDPAMLGKRHHADVAILGDAALAIDEILNKVD 331 (590)
T ss_dssp HHHHHHHHCSEEEEESCCCTTTTTTTTT--T---TCSEEEEEESCGGGTTSSSCCSEEEESCHHHHHHHHHHHSC
T ss_pred HHHHHHHhCCEEEEECCCCcchhccccC--C---CCCeEEEEeCCHHHHCCCcCCCeEEEcCHHHHHHHHHHhhc
Confidence 345677899999999998864431 000 0 26789999998876655 4578899999999999988664
No 29
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=84.39 E-value=1.6 Score=46.60 Aligned_cols=70 Identities=13% Similarity=0.146 Sum_probs=48.1
Q ss_pred HHHHhhCCeEEEEccCcch---hhHHHHHHHHH----HCCCeEEEEcCCCCCCCC--cccEEEeCcHHHHHHHHHHhCC
Q 016025 321 MEAAKECDAFLVLGSSLMT---MSAYRLVRAAH----EAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVGS 390 (396)
Q Consensus 321 ~~~~~~aDllLVvGTSl~V---~pa~~Lv~~a~----~~g~~lIiIN~~~t~~d~--~a~l~I~~~a~evL~~L~~~~~ 390 (396)
.+.+++||++|.||+.+.- .....+...++ +....+|.|+.++...+. ..++.|.+|+.++|..|++.+.
T Consensus 351 ~~~l~~aDlvl~iG~r~~~~~t~~~~~~~~~~~~~~~~~~~~iI~idid~~~~~~~~~~~~~i~gD~~~~l~~L~~~l~ 429 (677)
T 1t9b_A 351 NLAVQNADLIIAVGARFDDRVTGNISKFAPEARRAAAEGRGGIIHFEVSPKNINKVVQTQIAVEGDATTNLGKMMSKIF 429 (677)
T ss_dssp HHHHHHCSEEEEESCCCCTTTSCSGGGSSHHHHHHHHTTSCEEEEEESCGGGSSSSSCCSEEEESCHHHHHHHHHTTSC
T ss_pred HHHHhcCCEEEEECCccCcccccCccccCcccccccccCCceEEEEECCHHHhCCcccCCEEEeCCHHHHHHHHHHHhh
Confidence 3467899999999998752 11112212222 223458999988876654 4678899999999999987654
No 30
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=83.87 E-value=0.44 Score=41.56 Aligned_cols=12 Identities=42% Similarity=1.071 Sum_probs=9.8
Q ss_pred eeeeCCCCcccc
Q 016025 224 TVVCLDCGFSFC 235 (396)
Q Consensus 224 ~~~C~~C~~~~~ 235 (396)
..+|..|++.|.
T Consensus 132 ~y~C~~Cg~~~~ 143 (165)
T 2lcq_A 132 RYVCIGCGRKFS 143 (165)
T ss_dssp CEEESSSCCEES
T ss_pred EEECCCCCCccc
Confidence 578999998874
No 31
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=80.94 E-value=0.57 Score=48.49 Aligned_cols=65 Identities=14% Similarity=0.101 Sum_probs=47.5
Q ss_pred HhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCCCCCCC--cccEEEeCcHHHHHHHHHHhC
Q 016025 324 AKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVG 389 (396)
Q Consensus 324 ~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~~t~~d~--~a~l~I~~~a~evL~~L~~~~ 389 (396)
++++|++|.+|+.+.......+-.. ...+.++|.|+.++...+. ..++.|.+|+.++|..|.+.+
T Consensus 267 ~~~aDlvl~iG~~~~~~~~~~~~~~-~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l 333 (563)
T 2uz1_A 267 DAAPDLVLMLGARFGLNTGHGSGQL-IPHSAQVIQVDPDACELGRLQGIALGIVADVGGTIEALAQAT 333 (563)
T ss_dssp TCCCSEEEEESCCSSGGGTTTSCSS-SCTTSEEEEECSCGGGTTSSSCCSEEECSCHHHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCccccccccccc-CCCCCeEEEEECCHHHhCCCCCCCeEEEcCHHHHHHHHHHhh
Confidence 6889999999998865432211100 1115789999999876655 468899999999999998754
No 32
>2vpz_A Thiosulfate reductase; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_A* 2vpw_A* 2vpy_A*
Probab=79.59 E-value=3 Score=44.77 Aligned_cols=55 Identities=9% Similarity=0.115 Sum_probs=43.9
Q ss_pred HhhCCeEEEEccCcch-h--hHHHHHHHHHHCCCeEEEEcCCCCCCCCcccEEEeCcH
Q 016025 324 AKECDAFLVLGSSLMT-M--SAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARL 378 (396)
Q Consensus 324 ~~~aDllLVvGTSl~V-~--pa~~Lv~~a~~~g~~lIiIN~~~t~~d~~a~l~I~~~a 378 (396)
++++|++|++|+.... . .....+..++++|+++|.|++..|.....+|.+|.-+.
T Consensus 197 ~~~ad~il~~G~n~~~~~p~~~~~~~~~a~~~G~klividPr~t~ta~~Ad~~l~irP 254 (765)
T 2vpz_A 197 WENARYIVLIGHHIGEDTHNTQLQDFALALKNGAKVVVVDPRFSTAAAKAHRWLPIKP 254 (765)
T ss_dssp GGGCSEEEEESCCBTTBCCHHHHHHHHHHHHTTCEEEEECSBCCTTGGGCSEEECCCT
T ss_pred cccCCEEEEEeCChhhcCChHHHHHHHHHHHCCCEEEEECCCCCcchhhCCeEeCCCC
Confidence 5699999999987654 2 35556677888999999999999988888898876443
No 33
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=75.48 E-value=1.1 Score=40.31 Aligned_cols=14 Identities=21% Similarity=0.579 Sum_probs=11.1
Q ss_pred cceeeeCCCCcccc
Q 016025 222 VYTVVCLDCGFSFC 235 (396)
Q Consensus 222 l~~~~C~~C~~~~~ 235 (396)
...++|..||..|.
T Consensus 153 ~~~~~C~~CG~~~~ 166 (191)
T 1lko_A 153 ATKWRCRNCGYVHE 166 (191)
T ss_dssp EEEEEETTTCCEEE
T ss_pred CceEEECCCCCEee
Confidence 34789999998874
No 34
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=75.21 E-value=0.58 Score=47.99 Aligned_cols=71 Identities=15% Similarity=0.207 Sum_probs=49.0
Q ss_pred HHHHHHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCCCCCCC-cccEEEeCcHHHHHHHHHHhCC
Q 016025 319 KAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD-LTTLKISARLGEILPRVLDVGS 390 (396)
Q Consensus 319 ~a~~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~~t~~d~-~a~l~I~~~a~evL~~L~~~~~ 390 (396)
.+.+.++++|++|++|+.+.......+... ...++++|.|+.++...+. ..++.|.+|+.++|..|.+.+.
T Consensus 259 ~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~-~~~~~~~i~id~d~~~~~~~~~~~~i~~d~~~~l~~L~~~~~ 330 (528)
T 1q6z_A 259 AISQLLEGHDVVLVIGAPVFRYHQYDPGQY-LKPGTRLISVTCDPLEAARAPMGDAIVADIGAMASALANLVE 330 (528)
T ss_dssp HHHHHHTTCSEEEEESSCTTCCCSCCCSCS-SCTTCEEEEEESCHHHHHHCSSSEEEESCHHHHHHHHHHHSC
T ss_pred HHHHHHhcCCEEEEECCCCccccccCcCCc-CCCCCeEEEEeCCHHHhCCCCCCeeEeCCHHHHHHHHHHHhh
Confidence 455678899999999998764332211100 0126789999988643221 5678899999999999987653
No 35
>1efv_A Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 c.31.1.2 PDB: 2a1u_A* 1t9g_R* 2a1t_R*
Probab=75.16 E-value=4 Score=39.45 Aligned_cols=60 Identities=15% Similarity=0.193 Sum_probs=46.3
Q ss_pred hCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCCC-CCCCcccEEEeCcHHHHHHHHHHhCC
Q 016025 326 ECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGET-RADDLTTLKISARLGEILPRVLDVGS 390 (396)
Q Consensus 326 ~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~~t-~~d~~a~l~I~~~a~evL~~L~~~~~ 390 (396)
..+|.|-+|-|..+.=...+ +.-..+|-||.++. ++-+.+|+-|-+|+-+++|+|.+.+.
T Consensus 253 ~P~lYiA~GISGAiQHlaGm-----~~s~~IVAIN~D~~ApIf~~ADygiVgDl~~v~P~L~~~l~ 313 (315)
T 1efv_A 253 APELYIAVGISGAIQHLAGM-----KDSKTIVAINKDPEAPIFQVADYGIVADLFKVVPEMTEILK 313 (315)
T ss_dssp CCSEEEEESCCCCHHHHTTT-----TTCSEEEEEESCTTCGGGGTCSEEEESCHHHHHHHHHHHTC
T ss_pred CcceEEEecccCcHHHHhhc-----ccCCEEEEEeCCCCCCcchhcCeEEeeeHHHHHHHHHHHHh
Confidence 46799999999987622222 12235788999874 56779999999999999999998774
No 36
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=74.42 E-value=2.4 Score=33.06 Aligned_cols=29 Identities=28% Similarity=0.714 Sum_probs=22.8
Q ss_pred CCcCCCCCCcccCcEEEcCCCCCHHHHHHHHHHHh
Q 016025 291 IPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAK 325 (396)
Q Consensus 291 iP~Cp~Cgg~LRP~VVlFGE~lp~~~~~~a~~~~~ 325 (396)
+-+||.||.. |||..+|.+..++..+.+.
T Consensus 51 ~FkCP~CgEE------FyG~~Lp~~EaeKVFELLN 79 (95)
T 2k5c_A 51 VFKCPVCGEE------FYGKTLPRREAEKVFELLN 79 (95)
T ss_dssp EEECTTTCCE------EETTSSCTTTHHHHHHHHH
T ss_pred hhcCCCccHH------HhcccCChHHHHHHHHHHH
Confidence 4689999975 8999999876677776665
No 37
>1h0h_A Formate dehydrogenase (large subunit); tungsten selenium formate dehydrogenase, selenocysteine, molybdopterin, MGD, iron-sulphur cluster; HET: 2MD MGD EPE; 1.8A {Desulfovibrio gigas} SCOP: b.52.2.2 c.81.1.1
Probab=73.98 E-value=4.6 Score=44.82 Aligned_cols=56 Identities=25% Similarity=0.334 Sum_probs=43.3
Q ss_pred HHhhCCeEEEEccCcch-hh-HHHHHHHHHHCCCeEEEEcCCCCCCCCcccEEEeCcH
Q 016025 323 AAKECDAFLVLGSSLMT-MS-AYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARL 378 (396)
Q Consensus 323 ~~~~aDllLVvGTSl~V-~p-a~~Lv~~a~~~g~~lIiIN~~~t~~d~~a~l~I~~~a 378 (396)
.++++|++|++|+.... .| ....+..++++|+++|.|++..|.....+|++|.-+.
T Consensus 181 D~~~ad~il~~G~N~~~~~p~~~~~~~~a~~~G~klivIDPr~t~ta~~AD~~l~irP 238 (977)
T 1h0h_A 181 DLKNSDVILMMGSNPAENHPISFKWVMRAKDKGATLIHVDPRYTRTSTKCDLYAPLRS 238 (977)
T ss_dssp GGGGCSEEEEESCCHHHHSTTHHHHHHHHHHTTCEEEEECSSCCTTGGGCSEEECCCT
T ss_pred HHhhCCEEEEECCChHHhCcHHHHHHHHHHHCCCeEEEECCCCCchhHHhCeeeccCC
Confidence 36789999999987653 23 3445567788999999999999988888888865443
No 38
>1efp_A ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3 c.31.1.2
Probab=73.50 E-value=4.5 Score=38.94 Aligned_cols=59 Identities=12% Similarity=0.141 Sum_probs=45.1
Q ss_pred hCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCCC-CCCCcccEEEeCcHHHHHHHHHHhC
Q 016025 326 ECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGET-RADDLTTLKISARLGEILPRVLDVG 389 (396)
Q Consensus 326 ~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~~t-~~d~~a~l~I~~~a~evL~~L~~~~ 389 (396)
..+|.|-+|-|..+.=...| +.-..+|-||.++. ++-+.+|+-|-+|+-+++|+|.+.+
T Consensus 248 ~P~lYiA~GISGAiQHlaGm-----~~s~~IVAIN~D~~ApIF~~ADygiVgDl~~v~P~L~~~l 307 (307)
T 1efp_A 248 APELYVAVGISGAIQHLAGM-----KDSKVIVAINKDEEAPIFQIADYGLVGDLFSVVPELTGKL 307 (307)
T ss_dssp CCSEEEEESCCCCHHHHTTT-----TTCSEEEEEESCTTCGGGGTCSEEEESCHHHHHHHHHHTC
T ss_pred CCceEEEEeccCcHHHHhhh-----ccCCEEEEEeCCCCCCcccccCeEEeeeHHHHHHHHHhhC
Confidence 46799999999987622222 12235788999874 5677999999999999999998764
No 39
>2ivf_A Ethylbenzene dehydrogenase alpha-subunit; anaerobic hydrocarbon degradation, MOCO, Fe/S cluster, MO- B enzyme, DMSO reductase family; HET: MES MGD MD1 HEM; 1.88A {Aromatoleum aromaticum}
Probab=72.94 E-value=3.9 Score=45.38 Aligned_cols=55 Identities=13% Similarity=0.240 Sum_probs=44.1
Q ss_pred HhhCCeEEEEccCcch--hhHHHHHHHHHHCCCeEEEEcCCCCCCCCcccEEEeCcH
Q 016025 324 AKECDAFLVLGSSLMT--MSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARL 378 (396)
Q Consensus 324 ~~~aDllLVvGTSl~V--~pa~~Lv~~a~~~g~~lIiIN~~~t~~d~~a~l~I~~~a 378 (396)
+.++|++|++|+.... .+..+.+.+++++|+++|.|++..+.....+|++|.-+.
T Consensus 244 ~~nad~Il~~G~N~~~~~p~~~~~~~~ar~~GakvivVDPr~t~ta~~AD~wl~irP 300 (976)
T 2ivf_A 244 LLDAELIFMTCSNWSYTYPSSYHFLSEARYKGAEVVVIAPDFNPTTPAADLHVPVRV 300 (976)
T ss_dssp GGGCSEEEEESCCHHHHCTTTHHHHHHHHHHTCEEEEECSSCCTTGGGCSEEECCCT
T ss_pred HhhCcEEEEeCCChhHcccHHHHHHHHHHHcCCEEEEECCCCCcchhhcCeEeccCC
Confidence 5789999999987643 345666777888999999999999888888888875443
No 40
>2e7z_A Acetylene hydratase AHY; tungstoprotein, DMSO reductase family, iron-sulfur-cluster, lyase; HET: MGD; 1.26A {Pelobacter acetylenicus}
Probab=71.55 E-value=2.6 Score=44.90 Aligned_cols=52 Identities=15% Similarity=0.378 Sum_probs=41.2
Q ss_pred HhhCCeEEEEccCcch-h--hHHHHHHHHHHCCCeEEEEcCCCCCCCCcccEEEe
Q 016025 324 AKECDAFLVLGSSLMT-M--SAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKIS 375 (396)
Q Consensus 324 ~~~aDllLVvGTSl~V-~--pa~~Lv~~a~~~g~~lIiIN~~~t~~d~~a~l~I~ 375 (396)
++++|++|++|+.... . .....+..++++|+++|.|++..|.....+|.+|.
T Consensus 158 ~~~ad~il~~G~n~~~~~p~~~~~~l~~a~~~G~klividPr~t~ta~~Ad~~l~ 212 (727)
T 2e7z_A 158 FADSNCLLFIGKNLSNHNWVSQFNDLKAALKRGCKLIVLDPRRTKVAEMADIWLP 212 (727)
T ss_dssp TTTCSEEEEESCCCBTTBSHHHHHHHHHHHHHTCEEEEECSSCCHHHHHCSEEEC
T ss_pred cccCCEEEEECCChhhcCCHHHHHHHHHHHHCCCeEEEECCCCCcchhhcceeec
Confidence 5799999999987654 2 34556667888899999999998877777888874
No 41
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=71.42 E-value=2.2 Score=29.80 Aligned_cols=13 Identities=23% Similarity=0.421 Sum_probs=8.9
Q ss_pred eeeeCCCCcccch
Q 016025 224 TVVCLDCGFSFCR 236 (396)
Q Consensus 224 ~~~C~~C~~~~~~ 236 (396)
...|..|++.+..
T Consensus 3 iY~C~rCg~~fs~ 15 (48)
T 4ayb_P 3 VYRCGKCWKTFTD 15 (48)
T ss_dssp --CCCCTTTTCCC
T ss_pred EEEeeccCCCccH
Confidence 4579999988753
No 42
>2iv2_X Formate dehydrogenase H; oxidoreductase, 4Fe-4S, anaerobic, complete proteome, direct protein sequencing, Fe4S4, iron, iron sulfur cluster; HET: 2MD MGD; 2.27A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 1fdi_A* 1fdo_A* 1aa6_A*
Probab=71.27 E-value=3.3 Score=44.07 Aligned_cols=55 Identities=15% Similarity=0.249 Sum_probs=41.4
Q ss_pred HHhhCCeEEEEccCcch-hh-HHHHHHHHHHCCCeEEEEcCCCCCCCCcccEEEeCc
Q 016025 323 AAKECDAFLVLGSSLMT-MS-AYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISAR 377 (396)
Q Consensus 323 ~~~~aDllLVvGTSl~V-~p-a~~Lv~~a~~~g~~lIiIN~~~t~~d~~a~l~I~~~ 377 (396)
.++++|++|++|+.... .| ....+..++++|+++|.|++..|.....+|.+|.-+
T Consensus 163 di~~ad~il~~G~n~~~~~p~~~~~l~~a~~~G~klividPr~t~ta~~Ad~~l~ir 219 (715)
T 2iv2_X 163 EIDNTDLVFVFGYNPADSHPIVANHVINAKRNGAKIIVCDPRKIETARIADMHIALK 219 (715)
T ss_dssp GGGGCSEEEEESCCHHHHCHHHHHHHHHHHHTTCEEEEECSSCCHHHHTCSEEECCC
T ss_pred HHhcCCEEEEEcCChHHhCHHHHHHHHHHHHCCCeEEEEcCCCCchhHhhCEEeccC
Confidence 35789999999987654 22 344456678899999999999887767778776644
No 43
>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3
Probab=70.90 E-value=2.8 Score=36.19 Aligned_cols=56 Identities=13% Similarity=0.103 Sum_probs=43.4
Q ss_pred HHHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEE-cCCCCCCCCcccEEEeCc
Q 016025 322 EAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIV-NVGETRADDLTTLKISAR 377 (396)
Q Consensus 322 ~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiI-N~~~t~~d~~a~l~I~~~ 377 (396)
..+.+-|++|++-.|..+.-....++.++++|+++|.| |....+..+.+|+.|.-.
T Consensus 106 ~~~~~~Dvvi~iS~sG~t~~~~~~~~~ak~~g~~vi~iT~~~~s~L~~~ad~~l~~~ 162 (188)
T 1tk9_A 106 ALGNEKDVLIGISTSGKSPNVLEALKKAKELNMLCLGLSGKGGGMMNKLCDHNLVVP 162 (188)
T ss_dssp HHCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEEEGGGTTHHHHCSEEEEES
T ss_pred HhCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCcchHHcCCEEEEeC
Confidence 34678899999999999988889999999999988766 444455566677776543
No 44
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=69.85 E-value=2.5 Score=34.90 Aligned_cols=20 Identities=25% Similarity=0.561 Sum_probs=14.1
Q ss_pred eeeccccceeeeCCCCcccc
Q 016025 216 LELHGTVYTVVCLDCGFSFC 235 (396)
Q Consensus 216 iElHGsl~~~~C~~C~~~~~ 235 (396)
+++.---...+|.+|++.+.
T Consensus 65 L~i~~~p~~~~C~~CG~~~e 84 (119)
T 2kdx_A 65 LDIVDEKVELECKDCSHVFK 84 (119)
T ss_dssp EEEEEECCEEECSSSSCEEC
T ss_pred EEEEeccceEEcCCCCCEEe
Confidence 45554445789999998763
No 45
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=68.87 E-value=2 Score=44.41 Aligned_cols=66 Identities=17% Similarity=0.139 Sum_probs=44.2
Q ss_pred HHHHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCCCCCCCcccEEEeCcHHHHHHHHHHhCC
Q 016025 321 MEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVLDVGS 390 (396)
Q Consensus 321 ~~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~~t~~d~~a~l~I~~~a~evL~~L~~~~~ 390 (396)
.+.++++|++|++|+.+.-.....+... ..+.++|.|+.++...+. ......++.++|..|.+.+.
T Consensus 271 ~~~l~~aDlvl~iG~~~~~~~~~~~~~~--~~~~~~i~id~d~~~~~~--~~~~~~~~~~~l~~L~~~l~ 336 (568)
T 2wvg_A 271 EKTMKEADAVIALAPVFNDYSTTGWTDI--PDPKKLVLAEPRSVVVNG--IRFPSVHLKDYLTRLAQKVS 336 (568)
T ss_dssp HHHHHHCSEEEEESCCCBTTTTTTTTCC--CCTTTEEEECSSEEEETT--EEEESCCHHHHHHHHHHHCC
T ss_pred HHHHHhCCEEEEECCCcccccccccccC--CCCCcEEEEeCChhhcCC--eecCCCCHHHHHHHHHHhcc
Confidence 4567889999999998864433222111 125689999998876553 34455568899998887653
No 46
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=68.55 E-value=2.1 Score=44.23 Aligned_cols=67 Identities=13% Similarity=0.148 Sum_probs=45.1
Q ss_pred HHHHHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCCCCCCCcccEEEeCcHHHHHHHHHHhCC
Q 016025 320 AMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVLDVGS 390 (396)
Q Consensus 320 a~~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~~t~~d~~a~l~I~~~a~evL~~L~~~~~ 390 (396)
+.+.++++|++|++|+.+.......+... ..++++|.|+.++...+. .......+.++|..|.+.+.
T Consensus 270 ~~~~l~~aDlvl~iG~~~~~~~~~~~~~~--~~~~~~i~id~d~~~~~~--~~~~~~~~~~~l~~L~~~l~ 336 (566)
T 2vbi_A 270 VQELVETSDALLCIAPVFNDYSTVGWSAW--PKGPNVILAEPDRVTVDG--RAYDGFTLRAFLQALAEKAP 336 (566)
T ss_dssp HHHHHHTCSEEEEESCCCBTTTTTTTTSC--CCSTTEEEECSSEEEETT--EEEESSCHHHHHHHHHHHCC
T ss_pred HHHHHHhCCEEEEECCCcccccccccccc--CCCCcEEEEeCChheeCC--cccCCccHHHHHHHHHHhcc
Confidence 34567899999999998865433222111 135689999998876553 24455567889998887653
No 47
>2nap_A Protein (periplasmic nitrate reductase); nitrogenous acceptor, dissimilatory nitrate reductase; HET: MGD MES; 1.90A {Desulfovibrio desulfuricans} SCOP: b.52.2.2 c.81.1.1 PDB: 2jim_A* 2jir_A* 2jip_A* 2v45_A* 2v3v_A* 2jiq_A* 2jio_A*
Probab=68.45 E-value=5.6 Score=42.24 Aligned_cols=55 Identities=15% Similarity=0.365 Sum_probs=41.3
Q ss_pred HhhCCeEEEEccCcch-hh-HHHHHHHHHHC--CCeEEEEcCCCCCCCCcccEEEeCcH
Q 016025 324 AKECDAFLVLGSSLMT-MS-AYRLVRAAHEA--GSTIAIVNVGETRADDLTTLKISARL 378 (396)
Q Consensus 324 ~~~aDllLVvGTSl~V-~p-a~~Lv~~a~~~--g~~lIiIN~~~t~~d~~a~l~I~~~a 378 (396)
++++|++|++|+.... .| ....+..++++ |+++|.|++..+.....+|.+|.-+.
T Consensus 164 ~~~ad~il~~G~n~~~~~p~~~~~~~~a~~~~~g~klividP~~t~ta~~Ad~~l~irP 222 (723)
T 2nap_A 164 IDQATCFFIIGSNTSEAHPVLFRRIARRKQVEPGVKIIVADPRRTNTSRIADMHVAFRP 222 (723)
T ss_dssp GGTCSEEEEESCCHHHHSHHHHHHHHHHHHHCTTCEEEEECSBCCGGGGGCSEEECCCT
T ss_pred HhHCCEEEEEcCChhHhCcHHHHHHHHHHhhCCCCEEEEEcCcCCchhhhhCeeeecCC
Confidence 5799999999987654 22 23344556666 99999999999888788888876543
No 48
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=67.94 E-value=1.5 Score=37.46 Aligned_cols=22 Identities=14% Similarity=0.419 Sum_probs=16.3
Q ss_pred eeeccccceeeeCCCCcccchh
Q 016025 216 LELHGTVYTVVCLDCGFSFCRD 237 (396)
Q Consensus 216 iElHGsl~~~~C~~C~~~~~~~ 237 (396)
+++.---...+|.+|++.+...
T Consensus 62 L~i~~~p~~~~C~~CG~~~~~~ 83 (139)
T 3a43_A 62 IEFVEEEAVFKCRNCNYEWKLK 83 (139)
T ss_dssp EEEEEECCEEEETTTCCEEEGG
T ss_pred EEEEecCCcEECCCCCCEEecc
Confidence 5555556678999999987643
No 49
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=67.42 E-value=1.8 Score=44.67 Aligned_cols=66 Identities=14% Similarity=0.170 Sum_probs=43.0
Q ss_pred HHHHHHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCCCCCCCcccEEEeCcHHHHHHHHHHh
Q 016025 319 KAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVLDV 388 (396)
Q Consensus 319 ~a~~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~~t~~d~~a~l~I~~~a~evL~~L~~~ 388 (396)
.+.+.++++|++|++|+.+.-.....+... ..+.++|.||.++...+.. .....++.++|..|.+.
T Consensus 271 ~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~--~~~~~~i~id~d~~~~~~~--~~~~~~~~~~l~~L~~~ 336 (563)
T 2vk8_A 271 EVKEAVESADLILSVGALLSDFNTGSFSYS--YKTKNIVEFHSDHMKIRNA--TFPGVQMKFVLQKLLTT 336 (563)
T ss_dssp HHHHHHHTCSEEEEESCCCCTTTTTTTCCC--CCCSCEEEECSSEEEETTE--EEETCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCEEEEECCCCccccccccccC--CCCCeEEEEeCCceEECCc--ccCCcCHHHHHHHHHHh
Confidence 345567899999999998854433222111 1257899999987765543 33445578888887653
No 50
>3trj_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 2.80A {Francisella tularensis subsp}
Probab=66.22 E-value=13 Score=32.88 Aligned_cols=55 Identities=15% Similarity=0.175 Sum_probs=43.9
Q ss_pred HHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEE-cCCCCCCCCcc---cEEEeCc
Q 016025 323 AAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIV-NVGETRADDLT---TLKISAR 377 (396)
Q Consensus 323 ~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiI-N~~~t~~d~~a---~l~I~~~ 377 (396)
.+.+-|++|++-.|..+.-....++.|+++|+++|.| +....++...+ |+.|.-.
T Consensus 111 ~~~~~Dvvi~iS~SG~t~~~~~~~~~ak~~g~~vi~iT~~~~s~la~~a~~~d~~l~~~ 169 (201)
T 3trj_A 111 LGNEDDILLVITTSGDSENILSAVEEAHDLEMKVIALTGGSGGALQNMYNTDDIELRVP 169 (201)
T ss_dssp HCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEEETTCCGGGGTCCTTCEEEEES
T ss_pred hCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCcEEEEECCCCCHHHHhhccCCEEEEeC
Confidence 4678899999999999998999999999999998777 44556666666 7766543
No 51
>2i2w_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 1.95A {Escherichia coli} PDB: 2i22_A 1x94_A
Probab=64.90 E-value=16 Score=32.34 Aligned_cols=57 Identities=16% Similarity=0.226 Sum_probs=44.9
Q ss_pred HHHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEE-cCCCCCCCCcccEEEeCcH
Q 016025 322 EAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIV-NVGETRADDLTTLKISARL 378 (396)
Q Consensus 322 ~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiI-N~~~t~~d~~a~l~I~~~a 378 (396)
..+.+-|++|++-.|..+.-....++.|+++|+++|.| |....++.+.+|+.|.-..
T Consensus 127 ~~~~~~DvvI~iS~SG~t~~~i~~~~~ak~~G~~vIaIT~~~~s~La~~aD~~l~~~~ 184 (212)
T 2i2w_A 127 AVGREGDVLLGISTSGNSANVIKAIAAAREKGMKVITLTGKDGGKMAGTADIEIRVPH 184 (212)
T ss_dssp HHCCTTCEEEEECSSSCCHHHHHHHHHHHHHTCEEEEEEETTCGGGTTCSSEEEEECC
T ss_pred hcCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCeEEEEECCCCCchHHhCCEEEEcCC
Confidence 45678899999999999888889999999999987666 4455667777888775544
No 52
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=62.51 E-value=1.7 Score=44.91 Aligned_cols=66 Identities=12% Similarity=0.123 Sum_probs=43.2
Q ss_pred HHHHHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCCCCCCCcccEEEeCcHHHHHHHHHHhC
Q 016025 320 AMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVLDVG 389 (396)
Q Consensus 320 a~~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~~t~~d~~a~l~I~~~a~evL~~L~~~~ 389 (396)
+.+.++++|++|++|+.+.-.....+... ..+.++|.|+.++...+.. .....++.++|..|.+.+
T Consensus 289 ~~~~l~~aDlvl~iG~~~~~~~~~~~~~~--~~~~~~i~id~d~~~~~~~--~~~~~~~~~~l~~L~~~l 354 (570)
T 2vbf_A 289 LKNFVESADFILMLGVKLTDSSTGAFTHH--LDENKMISLNIDEGIIFNK--VVEDFDFRAVVSSLSELK 354 (570)
T ss_dssp HHHHHHHCSEEEEESCCCCGGGTTTTCCC--CCGGGEEEECSSCEEETTE--EECSSCHHHHHHTGGGCC
T ss_pred HHHHHHhCCEEEEECCCcccccccccccC--CCCCeEEEEeCCHHHhCCe--eecCCCHHHHHHHHHHhc
Confidence 45567899999999998854433222111 1246799999987655542 334556888888887654
No 53
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=62.29 E-value=3.6 Score=37.25 Aligned_cols=15 Identities=20% Similarity=0.368 Sum_probs=11.5
Q ss_pred ccceeeeCCCCcccc
Q 016025 221 TVYTVVCLDCGFSFC 235 (396)
Q Consensus 221 sl~~~~C~~C~~~~~ 235 (396)
....++|..||+.|.
T Consensus 168 ~~~~~~C~~CG~i~~ 182 (202)
T 1yuz_A 168 DDKFHLCPICGYIHK 182 (202)
T ss_dssp SCCEEECSSSCCEEE
T ss_pred CCcEEEECCCCCEEc
Confidence 345789999998763
No 54
>1eu1_A Dimethyl sulfoxide reductase; molybdenum, molybdenum cofactor, DMSO, molybdopte oxidoreductase; HET: GLC MGD EPE; 1.30A {Rhodobacter sphaeroides} SCOP: b.52.2.2 c.81.1.1 PDB: 4dmr_A* 1dmr_A* 1e5v_A* 1h5n_A* 2dmr_A* 3dmr_A* 1e61_A* 1e60_A* 1e18_A* 1dms_A*
Probab=61.74 E-value=5.1 Score=43.06 Aligned_cols=53 Identities=21% Similarity=0.268 Sum_probs=39.6
Q ss_pred HHhhCCeEEEEccCcch-hh---------HHHHHHHHHHCCCeEEEEcCCCCCCCCcc-cEEEe
Q 016025 323 AAKECDAFLVLGSSLMT-MS---------AYRLVRAAHEAGSTIAIVNVGETRADDLT-TLKIS 375 (396)
Q Consensus 323 ~~~~aDllLVvGTSl~V-~p---------a~~Lv~~a~~~g~~lIiIN~~~t~~d~~a-~l~I~ 375 (396)
.++++|++|++|+.... .| ....+..++++|+++|.|++..|.....+ |.+|.
T Consensus 174 d~~~ad~il~~G~N~~~~~~~~~~~~~~~~~~~l~~a~~~G~klivIDPr~t~ta~~aad~~l~ 237 (780)
T 1eu1_A 174 VVENTDLMVFWAADPMKTNEIGWVIPDHGAYAGMKALKEKGTRVIAINPVRTETADYFGADVVS 237 (780)
T ss_dssp HHHHCSEEEEESCCHHHHTTCCSSBCCCHHHHHHHHHHHHTCEEEEESSBCCHHHHHHTCEEEC
T ss_pred HHhhCCEEEEECCCHHHhcCCCCcccccchHHHHHHHHHCCCeEEEECCCCCCcccccCCEEee
Confidence 46799999999987643 22 33455677888999999999888765555 77765
No 55
>2xbl_A Phosphoheptose isomerase; capsule; HET: M7P PGE PG4; 1.62A {Burkholderia pseudomallei} PDB: 2x3y_A
Probab=61.57 E-value=8.8 Score=33.24 Aligned_cols=57 Identities=16% Similarity=0.100 Sum_probs=43.7
Q ss_pred HHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEE-cCCCCCCCCcccEEEeCcHH
Q 016025 323 AAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIV-NVGETRADDLTTLKISARLG 379 (396)
Q Consensus 323 ~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiI-N~~~t~~d~~a~l~I~~~a~ 379 (396)
.+.+-|++|++-.|..+.-....++.++++|+++|.| |....++...+|+.|.-..+
T Consensus 113 ~~~~~d~vI~iS~SG~t~~~~~~~~~ak~~g~~vI~IT~~~~s~L~~~ad~~l~~~~~ 170 (198)
T 2xbl_A 113 LGNEGDVLIGYSTSGKSPNILAAFREAKAKGMTCVGFTGNRGGEMRELCDLLLEVPSA 170 (198)
T ss_dssp HCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECSCCCTHHHHCSEEEECSCS
T ss_pred hCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCCcHHHhCCEEEEeCCC
Confidence 4578899999999999888889999999999987766 44445566677777755433
No 56
>3ml1_A NAPA, periplasmic nitrate reductase; heterodimer, oxidoreductase; HET: MGD HEC; 1.60A {Ralstonia eutropha} PDB: 3o5a_A* 1ogy_A* 2nya_A*
Probab=61.20 E-value=7.9 Score=41.98 Aligned_cols=55 Identities=18% Similarity=0.300 Sum_probs=39.7
Q ss_pred HHhhCCeEEEEccCcch-hhH-HHHHHHHH--HCCCeEEEEcCCCCCCCCcccEEEeCc
Q 016025 323 AAKECDAFLVLGSSLMT-MSA-YRLVRAAH--EAGSTIAIVNVGETRADDLTTLKISAR 377 (396)
Q Consensus 323 ~~~~aDllLVvGTSl~V-~pa-~~Lv~~a~--~~g~~lIiIN~~~t~~d~~a~l~I~~~ 377 (396)
.++++|++|++|+.... .|. ...+..++ ++|+++|.|++..|.....+|++|.-+
T Consensus 175 d~~~ad~il~~G~N~~~~~p~~~~~i~~a~~~~~G~klivIDPr~t~ta~~AD~~l~ir 233 (802)
T 3ml1_A 175 DFEAADAFVLWGSNMAEMHPILWTRVTDRRLSHPKTRVVVLSTFTHRCFDLADIGIIFK 233 (802)
T ss_dssp GGGTCSEEEEESCCHHHHSHHHHHHHHHHHHHSTTCEEEEEESSBCGGGGTCSEEEECC
T ss_pred HHhhCCEEEEECCChHHhChHHHHHHHHHHHhcCCCEEEEEeCCCCchhHHhccEeccC
Confidence 46799999999997654 342 22333444 379999999999998877888876543
No 57
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=60.81 E-value=3.9 Score=36.01 Aligned_cols=13 Identities=23% Similarity=0.710 Sum_probs=10.3
Q ss_pred ceeeeCCCCcccc
Q 016025 223 YTVVCLDCGFSFC 235 (396)
Q Consensus 223 ~~~~C~~C~~~~~ 235 (396)
..++|..||..+.
T Consensus 137 ~~~~C~~CG~i~~ 149 (170)
T 3pwf_A 137 KVYICPICGYTAV 149 (170)
T ss_dssp CEEECTTTCCEEE
T ss_pred CeeEeCCCCCeeC
Confidence 3678999998763
No 58
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=60.49 E-value=3.3 Score=42.53 Aligned_cols=65 Identities=12% Similarity=0.180 Sum_probs=42.1
Q ss_pred HHHHHHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCCCCCCCcccEEEeCcHHHHHHHHHH
Q 016025 319 KAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVLD 387 (396)
Q Consensus 319 ~a~~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~~t~~d~~a~l~I~~~a~evL~~L~~ 387 (396)
.+.+.++++|++|++|+.+.......+... ..+.++|.|+.++...+.. .....++.++|..|.+
T Consensus 269 ~~~~~l~~aD~vl~iG~~~~~~~~~~~~~~--~~~~~~i~id~d~~~~~~~--~~~~~~~~~~l~~L~~ 333 (552)
T 1ovm_A 269 AVKEAIEGADTVLCVGTRFTDTLTAGFTHQ--LTPAQTIEVQPHAARVGDV--WFTGIPMNQAIETLVE 333 (552)
T ss_dssp HHHHHHHTSSEEEEESCCCCTTTTTTTCCC--CCTTTEEEECSSEEEETTE--EEESCCHHHHHHHHHH
T ss_pred HHHHHHHhCCEEEEECCCCCcccccccccC--CCCCeEEEEeCChheeCCc--ccCCccHHHHHHHHHh
Confidence 345677899999999998865443222111 1256799999887655542 2334456788887765
No 59
>1kqf_A FDH-N alpha, formate dehydrogenase, nitrate-inducible, major S; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 1kqg_A*
Probab=60.44 E-value=5.9 Score=44.15 Aligned_cols=55 Identities=18% Similarity=0.328 Sum_probs=41.0
Q ss_pred HHhhCCeEEEEccCcch-hh-HHHHHHHHH-HCCCeEEEEcCCCCCCCCcccEEEeCc
Q 016025 323 AAKECDAFLVLGSSLMT-MS-AYRLVRAAH-EAGSTIAIVNVGETRADDLTTLKISAR 377 (396)
Q Consensus 323 ~~~~aDllLVvGTSl~V-~p-a~~Lv~~a~-~~g~~lIiIN~~~t~~d~~a~l~I~~~ 377 (396)
.++++|++|++|+.... .| ....+..++ ++|+++|.|++..|.....+|++|.-+
T Consensus 219 D~~~ad~il~~G~N~~~~~p~~~~~i~~a~~~~GaklivIDPr~t~ta~~AD~~l~ir 276 (1015)
T 1kqf_A 219 DIKNANVVMVMGGNAAEAHPVGFRWAMEAKNNNDATLIVVDPRFTRTASVADIYAPIR 276 (1015)
T ss_dssp GGGGCSEEEEESCCHHHHSTTTTHHHHHHHHHSCCEEEEECSSCCHHHHTCSEEECCC
T ss_pred HHhhCCEEEEECCChhhhCchHHHHHHHHHHHCCCeEEEEeCCCCchhHhhCeeeccC
Confidence 46789999999987643 22 334455677 889999999998887767778776543
No 60
>1q16_A Respiratory nitrate reductase 1 alpha chain; membrane protein, electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA 3PH; 1.90A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 3ir7_A* 1y5i_A* 1siw_A* 1y4z_A* 1r27_A* 1y5l_A* 1y5n_A* 3ir6_A* 3ir5_A* 3egw_A*
Probab=59.95 E-value=4.8 Score=46.03 Aligned_cols=55 Identities=11% Similarity=0.128 Sum_probs=42.4
Q ss_pred HHhhCCeEEEEccCcch--hhHHHHHHHHHHCCCeEEEEcCCCCCCCCcccEEEeCc
Q 016025 323 AAKECDAFLVLGSSLMT--MSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISAR 377 (396)
Q Consensus 323 ~~~~aDllLVvGTSl~V--~pa~~Lv~~a~~~g~~lIiIN~~~t~~d~~a~l~I~~~ 377 (396)
.+.++|++|++|+.... .+....+.+++++|+++|.|++..+.....+|++|.-+
T Consensus 243 D~~~ad~iv~wGsN~~~t~~~~~~~l~~ar~~G~KvVvIDPr~t~ta~~AD~wl~ir 299 (1247)
T 1q16_A 243 DWYNSSYIIAWGSNVPQTRTPDAHFFTEVRYKGTKTVAVTPDYAEIAKLCDLWLAPK 299 (1247)
T ss_dssp GGGGCSEEEEESCCHHHHSGGGHHHHHHHGGGTCEEEEECSSCCHHHHHSSEEECCC
T ss_pred HHhhCCEEEEECCCchhccHHHHHHHHHHHHCCCEEEEEeCCCCcchhhCCeEEeeC
Confidence 45689999999997633 34566667788889999999998887666778776533
No 61
>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3* 3m9s_3*
Probab=59.40 E-value=9.9 Score=41.06 Aligned_cols=57 Identities=16% Similarity=0.079 Sum_probs=40.2
Q ss_pred HHHhhCCeEEEEccCcch-hhH-HHHHHHHH-------------------------HCCCeEEEEcCCCCCCCCcccEEE
Q 016025 322 EAAKECDAFLVLGSSLMT-MSA-YRLVRAAH-------------------------EAGSTIAIVNVGETRADDLTTLKI 374 (396)
Q Consensus 322 ~~~~~aDllLVvGTSl~V-~pa-~~Lv~~a~-------------------------~~g~~lIiIN~~~t~~d~~a~l~I 374 (396)
..++++|++|++| .... .|. ...++.+. ++|+++|.|++..|.....++.++
T Consensus 388 ~di~~ad~Il~~G-Np~~~~P~~~~rlr~a~~~~~~~~~~~~g~~~~~~~v~~~~~~~g~klividPr~t~ta~~Ad~~l 466 (783)
T 3i9v_3 388 EDLLQADFALVLG-DPTEEAPILHLRLSEFVRDLKPPHRYNHGTPFADLQIKERMPRRTDKMALFAPYRAPLMKWAAIHE 466 (783)
T ss_dssp HHHHHCSCEEEES-CHHHHSTHHHHHHHHHHTTCCCCCCBTTBSCSSCTTCCTTCCCCTTSEEEEESSCCGGGTTCSEEE
T ss_pred HHHhhCCEEEEeC-ChhHhCcHHHHHHHHHHHhcccchhhcccccchhhhhhhhhhcCCCEEEEEeCCcchhhHhhcceE
Confidence 4567999999999 6543 332 22233332 568899999999998888888876
Q ss_pred eCcHH
Q 016025 375 SARLG 379 (396)
Q Consensus 375 ~~~a~ 379 (396)
.-+.+
T Consensus 467 ~i~PG 471 (783)
T 3i9v_3 467 VHRPG 471 (783)
T ss_dssp ECCSS
T ss_pred ecCCC
Confidence 54433
No 62
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=59.39 E-value=5.9 Score=29.90 Aligned_cols=11 Identities=18% Similarity=0.797 Sum_probs=8.7
Q ss_pred eeeeCCCCccc
Q 016025 224 TVVCLDCGFSF 234 (396)
Q Consensus 224 ~~~C~~C~~~~ 234 (396)
...|.+|+..+
T Consensus 28 ~Y~C~~CG~~~ 38 (70)
T 1twf_L 28 KYICAECSSKL 38 (70)
T ss_dssp CEECSSSCCEE
T ss_pred EEECCCCCCcc
Confidence 45899999875
No 63
>1ti6_A Pyrogallol hydroxytransferase large subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} SCOP: b.52.2.2 c.81.1.1 PDB: 1ti2_A* 1ti4_A* 1vld_M* 1vle_M* 1vlf_M*
Probab=58.65 E-value=5.7 Score=43.32 Aligned_cols=53 Identities=13% Similarity=0.073 Sum_probs=38.1
Q ss_pred HHhhCCeEEEEccCcchhhH-------HHHHHHHHHCCCeEEEEcCCCCCCCCc-ccEEEe
Q 016025 323 AAKECDAFLVLGSSLMTMSA-------YRLVRAAHEAGSTIAIVNVGETRADDL-TTLKIS 375 (396)
Q Consensus 323 ~~~~aDllLVvGTSl~V~pa-------~~Lv~~a~~~g~~lIiIN~~~t~~d~~-a~l~I~ 375 (396)
.++++|++|++|+.....|. ..+...++++|+++|.|++..|..... +|++|.
T Consensus 205 ~~~~ad~il~~G~Np~~~p~~~~~~~~~~~~~~a~~~G~klivIDPr~t~ta~~~Ad~~l~ 265 (875)
T 1ti6_A 205 GLKHAEMIVFWSSDPETNSGIYAGFESNIRRQWLKDLGVDFVFIDPHMNHTARLVADKWFS 265 (875)
T ss_dssp HHHHCSEEEEESCCHHHHCSSSCTTTTHHHHHHHHHTTCEEEEECSBCCHHHHHHCSEEEC
T ss_pred HHhcCCEEEEECCChhhCCccCCCccchHHHHHHHHcCCeEEEECCCCCCcccccCCEEec
Confidence 46799999999998733443 233333778899999999988865554 476654
No 64
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=55.84 E-value=17 Score=25.95 Aligned_cols=13 Identities=23% Similarity=0.705 Sum_probs=10.9
Q ss_pred ceeeeCCCCcccc
Q 016025 223 YTVVCLDCGFSFC 235 (396)
Q Consensus 223 ~~~~C~~C~~~~~ 235 (396)
.+.+|..|+..|+
T Consensus 2 ~~y~C~vCGyvYd 14 (54)
T 4rxn_A 2 KKYTCTVCGYIYD 14 (54)
T ss_dssp CCEEETTTCCEEC
T ss_pred CceECCCCCeEEC
Confidence 4679999999886
No 65
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=54.19 E-value=23 Score=30.20 Aligned_cols=56 Identities=9% Similarity=0.064 Sum_probs=41.8
Q ss_pred HHHHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcC-CCCCCCCcccEEEeC
Q 016025 321 MEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNV-GETRADDLTTLKISA 376 (396)
Q Consensus 321 ~~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~-~~t~~d~~a~l~I~~ 376 (396)
...+.+-|++|++-.|..+.-....++.++++|+++|.|-- ...++...+|+.+.-
T Consensus 82 ~~~~~~~d~~i~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~l~~ 138 (187)
T 3sho_A 82 LANLRPTDLMIGVSVWRYLRDTVAALAGAAERGVPTMALTDSSVSPPARIADHVLVA 138 (187)
T ss_dssp HHTCCTTEEEEEECCSSCCHHHHHHHHHHHHTTCCEEEEESCTTSHHHHHCSEEEEC
T ss_pred HhcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCCEEEEeCCCCCcchhhCcEEEEe
Confidence 34567889999999999888888899999999999877743 344444556665543
No 66
>3szu_A ISPH, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; 3Fe-4S iron-sulfur cluster, conserved cysteine, IPP and DMAP production final STEP; HET: H6P; 1.40A {Escherichia coli} PDB: 3szl_A* 3f7t_A* 3szo_A* 3t0f_A* 3t0g_A* 3urk_A* 3utc_A* 3utd_A* 3uv3_A* 3uv6_A* 3uv7_A* 3uwm_A* 3ke8_A* 3ke9_A* 3kef_A* 3kel_A 3kem_A*
Probab=54.10 E-value=27 Score=34.00 Aligned_cols=73 Identities=18% Similarity=0.344 Sum_probs=47.3
Q ss_pred HHHHHHHHHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCCC----CCCCcccEEEeCcH-------HHHHHH
Q 016025 316 RADKAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGET----RADDLTTLKISARL-------GEILPR 384 (396)
Q Consensus 316 ~~~~a~~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~~t----~~d~~a~l~I~~~a-------~evL~~ 384 (396)
+.+.+.+..+++|++||||..-+ .-..+|.+.+.+.|.+.+.|....- -+.....+-|.+.+ .+|+..
T Consensus 215 RQ~av~~lA~~vD~miVVGg~nS-SNT~rL~eia~~~g~~ty~Ie~~~el~~~wl~g~~~VGITAGASTP~~lieeVi~~ 293 (328)
T 3szu_A 215 RQEAVRALAEQAEVVLVVGSKNS-SNSNRLAELAQRMGKRAFLIDDAKDIQEEWVKEVKCVGVTAGASAPDILVQNVVAR 293 (328)
T ss_dssp HHHHHHHHHHHCSEEEEECCTTC-HHHHHHHHHHHHTTCEEEEESSGGGCCHHHHTTCSEEEEEECTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCEEEEeCCCCC-chHHHHHHHHHHhCCCEEEeCChHHCCHHHhCCCCEEEEeecCCCCHHHHHHHHHH
Confidence 45566677789999999997543 3346888889889988888874321 12233345565553 356666
Q ss_pred HHHhC
Q 016025 385 VLDVG 389 (396)
Q Consensus 385 L~~~~ 389 (396)
|.+.+
T Consensus 294 l~~~~ 298 (328)
T 3szu_A 294 LQQLG 298 (328)
T ss_dssp HHHTT
T ss_pred HHHhC
Confidence 65543
No 67
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=53.39 E-value=69 Score=27.61 Aligned_cols=77 Identities=13% Similarity=0.145 Sum_probs=50.9
Q ss_pred CHHHHHHHHHHHhhCCeEEEE-----ccCcchhhHHHHHHHHHHCCCeEEEEcCCCC----------------------C
Q 016025 313 PKDRADKAMEAAKECDAFLVL-----GSSLMTMSAYRLVRAAHEAGSTIAIVNVGET----------------------R 365 (396)
Q Consensus 313 p~~~~~~a~~~~~~aDllLVv-----GTSl~V~pa~~Lv~~a~~~g~~lIiIN~~~t----------------------~ 365 (396)
....++.-.+++++||++|.+ |.....--+.++ ..|...|.+++.+..+.- +
T Consensus 54 ~~~i~~~d~~~i~~aD~vVA~ldpf~g~~~D~GTafEi-GyA~AlgKPVi~l~~d~r~~~~~~~~~~d~~g~~vedf~~~ 132 (161)
T 2f62_A 54 ALDIRQKNIQMIKDCDAVIADLSPFRGHEPDCGTAFEV-GCAAALNKMVLTFTSDRRNMREKYGSGVDKDNLRVEGFGLP 132 (161)
T ss_dssp HHHHHHHHHHHHHHCSEEEEECCCCSSSSCCHHHHHHH-HHHHHTTCEEEEECSCCSCHHHHHTSSBCTTSCBCCCSSCS
T ss_pred HHHHHHHHHHHHHhCCEEEEEecCCCCCCCCCcHHHHH-HHHHHCCCEEEEEEcCchhhhhhcccccccccccccccCCc
Confidence 345667778899999999999 545544444454 456678999999875421 0
Q ss_pred CCC--cccEEEeCcHHHHHHHHHHhCC
Q 016025 366 ADD--LTTLKISARLGEILPRVLDVGS 390 (396)
Q Consensus 366 ~d~--~a~l~I~~~a~evL~~L~~~~~ 390 (396)
.+- .....+..+.++.|..|.+.+.
T Consensus 133 ~NLMl~~~~~~~~~~~~~l~~l~~~~~ 159 (161)
T 2f62_A 133 FNLMLYDGVEVFDSFESAFKYFLANFP 159 (161)
T ss_dssp SCGGGCCSSCEESSHHHHHHHHHHHSC
T ss_pred chhhhhhhheeeCCHHHHHHHHHHhhc
Confidence 000 0112267889999999887764
No 68
>3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=51.82 E-value=9.9 Score=32.87 Aligned_cols=61 Identities=7% Similarity=0.070 Sum_probs=33.4
Q ss_pred HHhhCCeEEEEccCc--chhhHHHHHHHHHHCCCeEEEEcCCCCCCCCcccEEEe-CcHHHHHHHHHHhC
Q 016025 323 AAKECDAFLVLGSSL--MTMSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKIS-ARLGEILPRVLDVG 389 (396)
Q Consensus 323 ~~~~aDllLVvGTSl--~V~pa~~Lv~~a~~~g~~lIiIN~~~t~~d~~a~l~I~-~~a~evL~~L~~~~ 389 (396)
.+++||++|++|+.+ .-.....+-... . .++|.|+..... . ....+. -...++|+.|.+.+
T Consensus 104 ~~~~aDlvl~iG~~~~~~~~~t~~~~~~~--~-~~iI~i~~~~~~--~-~~~~~~~l~~~~~l~~L~~~~ 167 (170)
T 3cf4_G 104 GNGNYDMIITIGFKKFYINQVLSAAKNFS--N-LKTIAIERGYIQ--N-ATMSFGNLSKADHYAALDELI 167 (170)
T ss_dssp SSCCCSEEEEESCCHHHHHHHHHHHHHHC--C-CCEEECSSSCCT--T-SSEECCCCCHHHHHHHHHHHH
T ss_pred HhhcCCEEEEECCccCccccccccccccC--C-CeEEEECCCccc--c-hhhhhccCCHHHHHHHHHHHH
Confidence 456899999999998 543322222111 2 567766554321 1 112211 23678888887643
No 69
>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; trilobal strucure, open alpha/beta, iron, iron-sulfur, isopr biosynthesis; 1.65A {Aquifex aeolicus}
Probab=50.30 E-value=26 Score=33.65 Aligned_cols=75 Identities=17% Similarity=0.185 Sum_probs=47.6
Q ss_pred CcEEEcCCCCC--HHHHHHHHHHHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCC----CCCCCcccEEEeC
Q 016025 303 PDVVFFGDNVP--KDRADKAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGE----TRADDLTTLKISA 376 (396)
Q Consensus 303 P~VVlFGE~lp--~~~~~~a~~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~~----t~~d~~a~l~I~~ 376 (396)
|++..|++-=. ..+.+.+.+...++|++||||..-+ .-..+|.+.+.+.|.+.+.|.... .-+.....+-|.+
T Consensus 184 p~~~~~~tIC~AT~~RQ~av~~la~~~D~miVVGg~nS-SNT~rL~eia~~~~~~ty~Ie~~~el~~~wl~~~~~VGITA 262 (297)
T 3dnf_A 184 KEVKVINTICNATSLRQESVKKLAPEVDVMIIIGGKNS-GNTRRLYYISKELNPNTYHIETAEELQPEWFRGVKRVGISA 262 (297)
T ss_dssp SEEEEECCCCSHHHHHHHHHHHHGGGSSEEEEESCTTC-HHHHHHHHHHHHHCSSEEEESSGGGCCGGGGTTCSEEEEEE
T ss_pred CCCCCCCCccHHHHHHHHHHHHHHhhCCEEEEECCCCC-chhHHHHHHHHhcCCCEEEeCChHHCCHHHhCCCCEEEEee
Confidence 35556655322 2355666777889999999997443 334688888888888888887432 2233334455665
Q ss_pred cH
Q 016025 377 RL 378 (396)
Q Consensus 377 ~a 378 (396)
.+
T Consensus 263 GA 264 (297)
T 3dnf_A 263 GA 264 (297)
T ss_dssp CT
T ss_pred cC
Confidence 54
No 70
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=50.15 E-value=31 Score=29.65 Aligned_cols=56 Identities=16% Similarity=0.148 Sum_probs=42.8
Q ss_pred HHHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEc-CCCCCCCCc---ccEEEeCc
Q 016025 322 EAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVN-VGETRADDL---TTLKISAR 377 (396)
Q Consensus 322 ~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN-~~~t~~d~~---a~l~I~~~ 377 (396)
..+.+-|++|++-.|..+.-....++.|+++|+++|.|= ...++.... +|+.|.-.
T Consensus 105 ~~~~~~DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~~~s~la~~~~~ad~~l~~~ 164 (196)
T 2yva_A 105 ALGHAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGELAGLLGPQDVEIRIP 164 (196)
T ss_dssp HHCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECTTCHHHHTTCCTTSEEEECS
T ss_pred hcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCchhhhcccCCCEEEEeC
Confidence 456788999999999999989999999999999987774 333444444 67776544
No 71
>1tmo_A TMAO reductase, trimethylamine N-oxide reductase; oxidoreductase, oxotransferase, molybdoenzyme, MO-cofactor, molybdenum; HET: 2MD; 2.50A {Shewanella massilia} SCOP: b.52.2.2 c.81.1.1
Probab=49.98 E-value=11 Score=40.68 Aligned_cols=52 Identities=8% Similarity=0.201 Sum_probs=39.3
Q ss_pred HhhCCeEEEEccCcch-h---------hHHHHHHHHHH---CCC-eEEEEcCCCCCCCCcc-cEEEe
Q 016025 324 AKECDAFLVLGSSLMT-M---------SAYRLVRAAHE---AGS-TIAIVNVGETRADDLT-TLKIS 375 (396)
Q Consensus 324 ~~~aDllLVvGTSl~V-~---------pa~~Lv~~a~~---~g~-~lIiIN~~~t~~d~~a-~l~I~ 375 (396)
++++|++|++|+.... . +....+..+++ +|+ ++|.|++..|.....+ |.+|.
T Consensus 208 ~~~ad~il~~G~Np~~~~~~~~~~~~~~~~~~~~~a~~~~~~G~~klivIDPr~t~ta~~a~d~~l~ 274 (829)
T 1tmo_A 208 LEHSDTIVLWSNDPYKNLQVGWNAETHESFAYLAQLKEKVKQGKIRVISIDPVVTKTQAYLGCEQLY 274 (829)
T ss_dssp HHHCSEEEEESCCHHHHTSCCSSBCCCTHHHHHHHHHHHHHHTSSEEEEECSSCCHHHHHHTCEEEC
T ss_pred HhhCCEEEEECCChhhccccccccccchHHHHHHHHHHHhhCCCceEEEECCCCCCcchhhcCEEec
Confidence 6799999999987643 2 24455566776 899 9999999988776666 77764
No 72
>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3
Probab=49.80 E-value=7.8 Score=34.16 Aligned_cols=53 Identities=15% Similarity=0.224 Sum_probs=40.1
Q ss_pred HhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcC-CCCCCCCcccEEEeC
Q 016025 324 AKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNV-GETRADDLTTLKISA 376 (396)
Q Consensus 324 ~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~-~~t~~d~~a~l~I~~ 376 (396)
+.+-|++|++-.|..+.-...+++.|+++|+++|.|=- ..+++...+|+.|.-
T Consensus 87 ~~~~DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~~~s~La~~ad~~l~~ 140 (200)
T 1vim_A 87 ITDQDVLVGISGSGETTSVVNISKKAKDIGSKLVAVTGKRDSSLAKMADVVMVV 140 (200)
T ss_dssp CCTTCEEEEECSSSCCHHHHHHHHHHHHHTCEEEEEESCTTSHHHHHCSEEEEC
T ss_pred CCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCChHHHhCCEEEEE
Confidence 45779999999999988888899999999999877743 334455566666543
No 73
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=48.94 E-value=10 Score=30.92 Aligned_cols=12 Identities=42% Similarity=1.041 Sum_probs=9.6
Q ss_pred ceeeeCCCCccc
Q 016025 223 YTVVCLDCGFSF 234 (396)
Q Consensus 223 ~~~~C~~C~~~~ 234 (396)
...+|.+||..|
T Consensus 66 ~p~~C~~CG~~F 77 (105)
T 2gmg_A 66 KPAQCRKCGFVF 77 (105)
T ss_dssp CCCBBTTTCCBC
T ss_pred ECcChhhCcCee
Confidence 356899999876
No 74
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=48.54 E-value=17 Score=25.07 Aligned_cols=14 Identities=29% Similarity=0.790 Sum_probs=11.4
Q ss_pred cceeeeCCCCcccc
Q 016025 222 VYTVVCLDCGFSFC 235 (396)
Q Consensus 222 l~~~~C~~C~~~~~ 235 (396)
+...+|..|+..|+
T Consensus 2 m~~y~C~vCGyvyd 15 (46)
T 6rxn_A 2 MQKYVCNVCGYEYD 15 (46)
T ss_dssp CCCEEETTTCCEEC
T ss_pred CCEEECCCCCeEEe
Confidence 35679999999885
No 75
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=47.32 E-value=29 Score=30.02 Aligned_cols=57 Identities=14% Similarity=0.189 Sum_probs=43.9
Q ss_pred HHHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEE-cCCCCCCCCc---ccEEEeCcH
Q 016025 322 EAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIV-NVGETRADDL---TTLKISARL 378 (396)
Q Consensus 322 ~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiI-N~~~t~~d~~---a~l~I~~~a 378 (396)
..+.+-|++|++-.|..+.-....++.|+++|+++|.| |....+.... +|+.|.-..
T Consensus 109 ~~~~~~DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~~~s~La~~~~~ad~~l~~~~ 169 (199)
T 1x92_A 109 ALGQPGDVLLAISTSGNSANVIQAIQAAHDREMLVVALTGRDGGGMASLLLPEDVEIRVPS 169 (199)
T ss_dssp HHCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHCCTTCEEEECSC
T ss_pred hCCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCcHHhccccCCEEEEeCC
Confidence 35678899999999999988899999999999998777 3334445556 777776543
No 76
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=46.62 E-value=25 Score=24.78 Aligned_cols=13 Identities=31% Similarity=0.807 Sum_probs=10.9
Q ss_pred ceeeeCCCCcccc
Q 016025 223 YTVVCLDCGFSFC 235 (396)
Q Consensus 223 ~~~~C~~C~~~~~ 235 (396)
...+|..|+..|+
T Consensus 2 ~~y~C~~CGyvYd 14 (52)
T 1e8j_A 2 DIYVCTVCGYEYD 14 (52)
T ss_dssp CCEECSSSCCCCC
T ss_pred CcEEeCCCCeEEc
Confidence 4689999999885
No 77
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=44.55 E-value=21 Score=27.61 Aligned_cols=14 Identities=29% Similarity=0.857 Sum_probs=12.0
Q ss_pred cceeeeCCCCcccc
Q 016025 222 VYTVVCLDCGFSFC 235 (396)
Q Consensus 222 l~~~~C~~C~~~~~ 235 (396)
....+|..|+..|+
T Consensus 25 m~~y~C~vCGyvYD 38 (81)
T 2kn9_A 25 YKLFRCIQCGFEYD 38 (81)
T ss_dssp CCEEEETTTCCEEE
T ss_pred cceEEeCCCCEEEc
Confidence 56799999999886
No 78
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=44.23 E-value=21 Score=25.46 Aligned_cols=13 Identities=31% Similarity=0.764 Sum_probs=11.0
Q ss_pred ceeeeCCCCcccc
Q 016025 223 YTVVCLDCGFSFC 235 (396)
Q Consensus 223 ~~~~C~~C~~~~~ 235 (396)
...+|..|+..|+
T Consensus 2 ~~y~C~~CGyvYd 14 (55)
T 2v3b_B 2 RKWQCVVCGFIYD 14 (55)
T ss_dssp CEEEETTTCCEEE
T ss_pred CcEEeCCCCeEEC
Confidence 4689999999885
No 79
>2h1q_A Hypothetical protein; ZP_00559375.1, structural genomics, PSI-2, protein structure initiative; 2.01A {Desulfitobacterium hafniense dcb-2} PDB: 3l5o_A
Probab=43.64 E-value=31 Score=32.53 Aligned_cols=71 Identities=17% Similarity=0.153 Sum_probs=49.7
Q ss_pred HHHHHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCCCCCCCccc----E---EEeCcHHHHHHHHHHhCCC
Q 016025 320 AMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADDLTT----L---KISARLGEILPRVLDVGSL 391 (396)
Q Consensus 320 a~~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~~t~~d~~a~----l---~I~~~a~evL~~L~~~~~l 391 (396)
+...+..||++++-||++.--...+++..++ +++.+|++-+...-.+..++ . ..-.|.+.++..+.+..+.
T Consensus 180 ~e~ll~~aD~viiTGsTlvN~Ti~~lL~~~~-~a~~vvl~GPS~p~~P~lf~~Gv~~l~G~~V~D~~~~~~~i~~Ggg~ 257 (270)
T 2h1q_A 180 SEFILPECDYVYITCASVVDKTLPRLLELSR-NARRITLVGPGTPLAPVLFEHGLQELSGFMVKDNARAFRIVAGAEKV 257 (270)
T ss_dssp HHHHGGGCSEEEEETHHHHHTCHHHHHHHTT-TSSEEEEESTTCCCCGGGGGTTCSEEEEEEESCHHHHHHHHTTSSCS
T ss_pred HHHHhhcCCEEEEEeeeeecCCHHHHHHhCc-cCCeEEEEecChhhhHHHHhcCcCEEEEeEecCHHHHHHHHHcCCCc
Confidence 3447789999999999999888889988875 34488888877433333221 1 1345688888777666553
No 80
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=43.18 E-value=9.8 Score=35.35 Aligned_cols=18 Identities=11% Similarity=0.349 Sum_probs=12.6
Q ss_pred eeeccccceeeeCCCCcccchh
Q 016025 216 LELHGTVYTVVCLDCGFSFCRD 237 (396)
Q Consensus 216 iElHGsl~~~~C~~C~~~~~~~ 237 (396)
+.++|+ .|..|+-..+..
T Consensus 194 v~v~~~----~C~GC~~~lppq 211 (256)
T 3na7_A 194 VTIKKQ----ACGGCFIRLNDK 211 (256)
T ss_dssp EECBTT----BCTTTCCBCCHH
T ss_pred EEeeCC----ccCCCCeeeCHH
Confidence 566654 799999776543
No 81
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=42.68 E-value=31 Score=29.21 Aligned_cols=52 Identities=15% Similarity=0.190 Sum_probs=39.7
Q ss_pred HhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcC-CCCCCCCcccEEEeC
Q 016025 324 AKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNV-GETRADDLTTLKISA 376 (396)
Q Consensus 324 ~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~-~~t~~d~~a~l~I~~ 376 (396)
+.+-|++|++-.|..+.-....++.++++|+++|.|=. ..+ ....+|+.|.-
T Consensus 80 ~~~~d~vi~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~~s-l~~~ad~~l~~ 132 (180)
T 1jeo_A 80 YEKDDLLILISGSGRTESVLTVAKKAKNINNNIIAIVCECGN-VVEFADLTIPL 132 (180)
T ss_dssp CCTTCEEEEEESSSCCHHHHHHHHHHHTTCSCEEEEESSCCG-GGGGCSEEEEC
T ss_pred CCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCcEEEEeCCCCh-HHHhCCEEEEe
Confidence 45779999999888888888888999999998877733 334 66667776543
No 82
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=42.07 E-value=21 Score=27.99 Aligned_cols=14 Identities=21% Similarity=0.759 Sum_probs=11.9
Q ss_pred cceeeeCCCCcccc
Q 016025 222 VYTVVCLDCGFSFC 235 (396)
Q Consensus 222 l~~~~C~~C~~~~~ 235 (396)
+..++|..|++.|+
T Consensus 33 m~~y~C~vCGyvYD 46 (87)
T 1s24_A 33 YLKWICITCGHIYD 46 (87)
T ss_dssp CCEEEETTTTEEEE
T ss_pred CceEECCCCCeEec
Confidence 56789999999885
No 83
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=41.85 E-value=28 Score=29.69 Aligned_cols=51 Identities=20% Similarity=0.133 Sum_probs=36.6
Q ss_pred HhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcC-CCCCCCCcccEEE
Q 016025 324 AKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNV-GETRADDLTTLKI 374 (396)
Q Consensus 324 ~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~-~~t~~d~~a~l~I 374 (396)
+.+-|++|++-.|..+.-....++.++++|+++|.|=. ...++...+|+.|
T Consensus 77 ~~~~d~vI~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~l 128 (186)
T 1m3s_A 77 LAEGDLVIIGSGSGETKSLIHTAAKAKSLHGIVAALTINPESSIGKQADLII 128 (186)
T ss_dssp CCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEESCTTSHHHHHCSEEE
T ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHHCCCEEEEEECCCCCchHHhCCEEE
Confidence 45779999998888888788888899999998877733 3333334444444
No 84
>3etn_A Putative phosphosugar isomerase involved in capsu formation; YP_209877.1; HET: MSE CMK; 1.70A {Bacteroides fragilis nctc 9343}
Probab=41.17 E-value=22 Score=31.82 Aligned_cols=54 Identities=19% Similarity=0.247 Sum_probs=40.3
Q ss_pred HHhhCCeEEEEccCcchhhHHHHHHHHHH--CCCeEEEEc-CCCCCCCCcccEEEeC
Q 016025 323 AAKECDAFLVLGSSLMTMSAYRLVRAAHE--AGSTIAIVN-VGETRADDLTTLKISA 376 (396)
Q Consensus 323 ~~~~aDllLVvGTSl~V~pa~~Lv~~a~~--~g~~lIiIN-~~~t~~d~~a~l~I~~ 376 (396)
.+.+-|++|++-.|..+.-....++.+++ +|+++|.|- ...+++...+|+.|.-
T Consensus 103 ~~~~~DlvI~iS~SG~t~~~i~~~~~ak~~~~Ga~vI~IT~~~~s~La~~aD~~l~~ 159 (220)
T 3etn_A 103 ILQENDLLLLISNSGKTREIVELTQLAHNLNPGLKFIVITGNPDSPLASESDVCLST 159 (220)
T ss_dssp GCCTTCEEEEECSSSCCHHHHHHHHHHHHHCTTCEEEEEESCTTSHHHHHSSEEEEC
T ss_pred cCCCCCEEEEEcCCCCCHHHHHHHHHHHhcCCCCeEEEEECCCCChhHHhCCEEEEc
Confidence 45678999999888888888888899999 999987774 3444455556666543
No 85
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=40.64 E-value=18 Score=26.76 Aligned_cols=11 Identities=36% Similarity=0.836 Sum_probs=8.2
Q ss_pred eeeeCCCCccc
Q 016025 224 TVVCLDCGFSF 234 (396)
Q Consensus 224 ~~~C~~C~~~~ 234 (396)
...|..|+...
T Consensus 21 ~Y~C~~Cg~~~ 31 (63)
T 3h0g_L 21 IYLCADCGARN 31 (63)
T ss_dssp CCBCSSSCCBC
T ss_pred EEECCCCCCee
Confidence 46788998764
No 86
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=40.53 E-value=32 Score=25.78 Aligned_cols=15 Identities=20% Similarity=0.514 Sum_probs=12.3
Q ss_pred ccceeeeCCCCcccc
Q 016025 221 TVYTVVCLDCGFSFC 235 (396)
Q Consensus 221 sl~~~~C~~C~~~~~ 235 (396)
.....+|..|+..|+
T Consensus 4 ~m~~y~C~vCGyiYd 18 (70)
T 1dx8_A 4 DEGKYECEACGYIYE 18 (70)
T ss_dssp CSSCEEETTTCCEEC
T ss_pred CCceEEeCCCCEEEc
Confidence 456789999999885
No 87
>3cvj_A Putative phosphoheptose isomerase; rossman fold, 3-layer (ABA) sandwich, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.00A {Bacillus halodurans c-125}
Probab=40.50 E-value=19 Score=32.58 Aligned_cols=52 Identities=6% Similarity=0.164 Sum_probs=40.5
Q ss_pred HhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCC-CC-----------CCCCcccEEEe
Q 016025 324 AKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVG-ET-----------RADDLTTLKIS 375 (396)
Q Consensus 324 ~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~-~t-----------~~d~~a~l~I~ 375 (396)
+.+-|++|++-.|..+.-...+++.|+++|+++|-|--. .+ ++.+.+|+.|.
T Consensus 106 ~~~~Dv~I~iS~SG~t~~~i~~~~~Ak~~G~~vI~IT~~~~s~~~~~~~~~g~~La~~aD~~l~ 169 (243)
T 3cvj_A 106 VTNKDVIMIISNSGRNTVPVEMAIESRNIGAKVIAMTSMKHSQKVTSRHKSGKKLYEYADVVLD 169 (243)
T ss_dssp CCTTCEEEEECSSCCSHHHHHHHHHHHHHTCEEEEEECHHHHHHSCCCSTTSCCGGGGCSEEEE
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCcccccccccCCCcCcHHHhCCEEEE
Confidence 567899999999999988899999999999998877332 22 45566777663
No 88
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=39.94 E-value=10 Score=39.14 Aligned_cols=66 Identities=12% Similarity=0.015 Sum_probs=39.7
Q ss_pred HHHHHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCCCCCCCcccEEEeCcHHHHHHHHHHhC
Q 016025 320 AMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVLDVG 389 (396)
Q Consensus 320 a~~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~~t~~d~~a~l~I~~~a~evL~~L~~~~ 389 (396)
+.+.++++|++|++|+.+.......+.... ...++|.|+.++...... ......+.++|..|.+.+
T Consensus 283 ~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~--~~~~~i~i~~d~~~~~~~--~~~~~~~~~~l~~L~~~l 348 (565)
T 2nxw_A 283 ITRLVEESDGLFLLGAILSDTNFAVSQRKI--DLRKTIHAFDRAVTLGYH--TYADIPLAGLVDALLERL 348 (565)
T ss_dssp HHHHHHTCSEEEEESCCBCSSTTSBCTTTS--CGGGEEEEETTEEEETTE--EEESCCHHHHHHHHHHTS
T ss_pred HHHHHHhCCEEEEECCCccccccccccccC--CCCcEEEEeCCceeeCCc--ccCCccHHHHHHHHHHhc
Confidence 455678999999999977543322111100 124688888766544332 333445677888887654
No 89
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=39.08 E-value=28 Score=29.50 Aligned_cols=54 Identities=7% Similarity=0.083 Sum_probs=40.6
Q ss_pred HHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEE-cCCCCCCCCcccEEEeC
Q 016025 323 AAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIV-NVGETRADDLTTLKISA 376 (396)
Q Consensus 323 ~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiI-N~~~t~~d~~a~l~I~~ 376 (396)
.+.+-|++|++-.|..+.-....++.++++|+++|.| +...+++...+++.|.-
T Consensus 93 ~~~~~d~vI~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~~s~la~~ad~~l~~ 147 (183)
T 2xhz_A 93 MVTPQDVVIAISNSGESSEITALIPVLKRLHVPLICITGRPESSMARAADVHLCV 147 (183)
T ss_dssp TCCTTCEEEEECSSSCCHHHHHHHHHHHTTTCCEEEEESCTTSHHHHHSSEEEEC
T ss_pred cCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCCEEEEECCCCChhHHhCCEEEEe
Confidence 3567899999999999888889999999999987776 33444555566666543
No 90
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=38.83 E-value=11 Score=29.36 Aligned_cols=13 Identities=31% Similarity=0.600 Sum_probs=8.6
Q ss_pred eeeeCCCCcccch
Q 016025 224 TVVCLDCGFSFCR 236 (396)
Q Consensus 224 ~~~C~~C~~~~~~ 236 (396)
..+|..|++.|..
T Consensus 18 ~~~C~~C~~~~~~ 30 (81)
T 2jrp_A 18 TAHCETCAKDFSL 30 (81)
T ss_dssp EEECTTTCCEEEE
T ss_pred ceECccccccCCC
Confidence 5568888776643
No 91
>3l5o_A Uncharacterized protein from DUF364 family; RARE metals, siderophores, adenosyl binding site; 2.01A {Desulfitobacterium hafniense}
Probab=37.70 E-value=47 Score=31.31 Aligned_cols=71 Identities=17% Similarity=0.142 Sum_probs=48.5
Q ss_pred HHHHHHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCCCCCCCccc----E---EEeCcHHHHHHHHHHhCC
Q 016025 319 KAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADDLTT----L---KISARLGEILPRVLDVGS 390 (396)
Q Consensus 319 ~a~~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~~t~~d~~a~----l---~I~~~a~evL~~L~~~~~ 390 (396)
.+...+.+||++++-||++.--...++++.++ +...++++-+...-.+..++ . .+-.|.+.++..+.+..+
T Consensus 179 ~~~~~lp~~D~viiTgstlvN~Tl~~lL~~~~-~a~~vvl~GPStp~~P~lf~~Gv~~laG~~V~d~~~~~~~i~~Gg~ 256 (270)
T 3l5o_A 179 ASEFILPECDYVYITCASVVDKTLPRLLELSR-NARRITLVGPGTPLAPVLFEHGLQELSGFMVKDNARAFRIVAGAEK 256 (270)
T ss_dssp GHHHHGGGCSEEEEETHHHHHTCHHHHHHHTT-TSSEEEEESTTCCCCGGGGGTTCSEEEEEEESCHHHHHHHHTTSSC
T ss_pred HHHHhhccCCEEEEEeehhhcCCHHHHHhhCC-CCCEEEEECCCchhhHHHHhcCcCEEEEEEEcCHHHHHHHHhcCCC
Confidence 34567899999999999999888889988774 34467788876443333222 1 133567777776665544
No 92
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=36.68 E-value=30 Score=24.35 Aligned_cols=12 Identities=25% Similarity=0.827 Sum_probs=10.3
Q ss_pred eeeeCCCCcccc
Q 016025 224 TVVCLDCGFSFC 235 (396)
Q Consensus 224 ~~~C~~C~~~~~ 235 (396)
..+|..|+..|+
T Consensus 2 ~~~C~~CGyvYd 13 (52)
T 1yk4_A 2 KLSCKICGYIYD 13 (52)
T ss_dssp EEEESSSSCEEE
T ss_pred cEEeCCCCeEEC
Confidence 578999999885
No 93
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=35.71 E-value=22 Score=30.03 Aligned_cols=53 Identities=21% Similarity=0.249 Sum_probs=35.3
Q ss_pred cCCCCHHHHHHHHHHHhCCCceeeecCccchHhhhCCCceee--ccccceeeeCCCCcccchh
Q 016025 177 AAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNPLEL--HGTVYTVVCLDCGFSFCRD 237 (396)
Q Consensus 177 ~a~Pn~~H~aLa~Le~~g~l~~VITQNIDgLh~kAG~~~iEl--HGsl~~~~C~~C~~~~~~~ 237 (396)
...+...|+.|..|++.|.+..+-..|- ...+++ +..=+.++|..||+..+.+
T Consensus 58 ~is~aTVYR~L~~L~e~Glv~~~~~~~~--------~~~Y~~~~~~~H~HliC~~Cg~v~~~~ 112 (150)
T 2xig_A 58 NTSISSVYRILNFLEKENFISVLETSKS--------GRRYEIAAKEHHDHIICLHCGKIIEFA 112 (150)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEEETTT--------EEEEEESCSCCCEEEEETTTCCEEEEC
T ss_pred CCCHhhHHHHHHHHHHCCcEEEEEeCCC--------ceEEEecCCCCceEEEECCCCCEEEec
Confidence 4556788999999999998866554331 111333 1222578999999987653
No 94
>1nri_A Hypothetical protein HI0754; structural genomics, haemophilus influ PSI, protein structure initiative, midwest center for struc genomics; 1.90A {Haemophilus influenzae} SCOP: c.80.1.3
Probab=35.27 E-value=23 Score=33.52 Aligned_cols=54 Identities=11% Similarity=0.098 Sum_probs=41.5
Q ss_pred HHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEc-CCCCCCCCcccEEEeC
Q 016025 323 AAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVN-VGETRADDLTTLKISA 376 (396)
Q Consensus 323 ~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN-~~~t~~d~~a~l~I~~ 376 (396)
.+.+-|++|++-.|..+.-+...++.|+++|+++|-|- ...+++...+|+.|.-
T Consensus 137 ~l~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~~IaIT~~~~S~La~~AD~~I~~ 191 (306)
T 1nri_A 137 HFSKNDVLVGIAASGRTPYVIAGLQYAKSLGALTISIASNPKSEMAEIADIAIET 191 (306)
T ss_dssp TCCTTSEEEEECTTSCCHHHHHHHHHHHHHTCEEEEEESSTTCHHHHHSSEEEEC
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCCCChHHHhCCEEEEc
Confidence 35688999999999999888999999999999877663 3345555566766643
No 95
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=34.01 E-value=88 Score=26.37 Aligned_cols=51 Identities=18% Similarity=0.230 Sum_probs=40.4
Q ss_pred CCCHHHHHHHHHHHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcC
Q 016025 311 NVPKDRADKAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNV 361 (396)
Q Consensus 311 ~lp~~~~~~a~~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~ 361 (396)
.++.+.++++.+.+.+++-++++|.+.+-..+..+.....+-|.++..++.
T Consensus 23 ~l~~~~l~~~~~~i~~a~~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~ 73 (187)
T 3sho_A 23 QTQPEAIEAAVEAICRADHVIVVGMGFSAAVAVFLGHGLNSLGIRTTVLTE 73 (187)
T ss_dssp TCCHHHHHHHHHHHHHCSEEEEECCGGGHHHHHHHHHHHHHTTCCEEEECC
T ss_pred hCCHHHHHHHHHHHHhCCEEEEEecCchHHHHHHHHHHHHhcCCCEEEecC
Confidence 456677889999999999999999988766666666666667888888873
No 96
>2gnr_A Conserved hypothetical protein; 13815350, structural genomics, PSI, protein structure initiative; 1.80A {Sulfolobus solfataricus P2} PDB: 3irb_A
Probab=33.17 E-value=15 Score=31.47 Aligned_cols=16 Identities=25% Similarity=0.632 Sum_probs=11.9
Q ss_pred ccccceeeeCCCCccc
Q 016025 219 HGTVYTVVCLDCGFSF 234 (396)
Q Consensus 219 HGsl~~~~C~~C~~~~ 234 (396)
.|.+.-.+|.+|++.+
T Consensus 42 ~g~L~~~rC~~CG~~~ 57 (145)
T 2gnr_A 42 QNKIIGSKCSKCGRIF 57 (145)
T ss_dssp TTCCEEEECTTTCCEE
T ss_pred CCEEEEEEECCCCcEE
Confidence 4566667999999764
No 97
>1ytl_A Acetyl-COA decarboxylase/synthase complex epsilon 2; structural genomics; 1.80A {Archaeoglobus fulgidus} SCOP: c.31.1.6
Probab=32.95 E-value=19 Score=31.67 Aligned_cols=36 Identities=17% Similarity=0.088 Sum_probs=22.9
Q ss_pred hhCCeEEEEccCcc--hhhHHHHHHHHHHCCCeEEEEcCC
Q 016025 325 KECDAFLVLGSSLM--TMSAYRLVRAAHEAGSTIAIVNVG 362 (396)
Q Consensus 325 ~~aDllLVvGTSl~--V~pa~~Lv~~a~~~g~~lIiIN~~ 362 (396)
++|||+|.||+.+. ......+-..+ .++++|.||..
T Consensus 107 ~~aDLvI~iG~rf~~~~~~t~~~~~fa--p~akii~Idk~ 144 (174)
T 1ytl_A 107 GNYDLVLMLGSIYYHGSQMLAAIKNFA--PHIRALAIDRY 144 (174)
T ss_dssp CCCSEEEEESCCHHHHHHHHHHHHHHC--TTCEEEECSSS
T ss_pred CCCCEEEEECCcCCccccccccccccC--CCCeEEEeCCC
Confidence 79999999999984 22212222122 26788888743
No 98
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=32.75 E-value=1.8e+02 Score=24.64 Aligned_cols=49 Identities=12% Similarity=0.062 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCC
Q 016025 314 KDRADKAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGE 363 (396)
Q Consensus 314 ~~~~~~a~~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~~ 363 (396)
...+++-.+++++||++|++.+....--+..+ ..|...|.+++.+....
T Consensus 65 ~~i~~~d~~~i~~aD~vva~~~~~d~Gt~~Ei-GyA~algKPVi~l~~~~ 113 (165)
T 2khz_A 65 QFIHEQDLNWLQQADVVVAEVTQPSLGVGYEL-GRAVALGKPILCLFRPQ 113 (165)
T ss_dssp HHHHHHHHHHHHHCSEEEEECSSCCHHHHHHH-HHHHHTCSSEEEEECTT
T ss_pred HHHHHHHHHHHHhCCEEEEECCCCCCCHHHHH-HHHHHCCCEEEEEEcCC
Confidence 34456667899999999998774433333343 45677899999986544
No 99
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=32.66 E-value=41 Score=27.68 Aligned_cols=53 Identities=23% Similarity=0.198 Sum_probs=34.1
Q ss_pred cCCCCHHHHHHHHHHHhCCCceeeecCccchHhhhCCCceeec--cccceeeeCCCCcccchh
Q 016025 177 AAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNPLELH--GTVYTVVCLDCGFSFCRD 237 (396)
Q Consensus 177 ~a~Pn~~H~aLa~Le~~g~l~~VITQNIDgLh~kAG~~~iElH--Gsl~~~~C~~C~~~~~~~ 237 (396)
...+...|+.|..|++.|.+..+-..| |...+++. ..=+.++|..|++..+.+
T Consensus 50 ~is~aTVYR~L~~L~e~Glv~~~~~~~--------~~~~Y~~~~~~~H~HliC~~Cg~v~~~~ 104 (136)
T 1mzb_A 50 DVGLATVYRVLTQFEAAGLVVRHNFDG--------GHAVFELADSGHHDHMVCVDTGEVIEFM 104 (136)
T ss_dssp CCCHHHHHHHHHHHHHHTSEEEECSSS--------SSCEEEESSSCCCEEEEETTTCCEEEEC
T ss_pred CCCHHHHHHHHHHHHHCCcEEEEEeCC--------CceEEEeCCCCcceEEEECCCCCEEEec
Confidence 445668899999999998775543221 11224431 122468999999987653
No 100
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=32.02 E-value=16 Score=29.30 Aligned_cols=12 Identities=25% Similarity=0.670 Sum_probs=8.0
Q ss_pred CCcCCCCCCccc
Q 016025 291 IPTCQKCNGVLK 302 (396)
Q Consensus 291 iP~Cp~Cgg~LR 302 (396)
.+.||.|+.+|.
T Consensus 61 ~a~CPdC~q~Le 72 (101)
T 2jne_A 61 KALCPDCHQPLQ 72 (101)
T ss_dssp EEECTTTCSBCE
T ss_pred cccCcchhhHHH
Confidence 466888876553
No 101
>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} SCOP: c.129.1.1
Probab=31.81 E-value=2.7e+02 Score=24.59 Aligned_cols=69 Identities=7% Similarity=0.126 Sum_probs=45.5
Q ss_pred HHHHHHHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCCC---------------CCCCcccEEEeCcHHHHH
Q 016025 318 DKAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGET---------------RADDLTTLKISARLGEIL 382 (396)
Q Consensus 318 ~~a~~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~~t---------------~~d~~a~l~I~~~a~evL 382 (396)
++-...+..+|.+|++.-+. ....=+.++...+.+++.+|...- .-+...-+.+..+.+|++
T Consensus 110 ~Rk~~m~~~sda~IvlpGG~---GTL~E~~eal~~~kPV~lln~~g~w~~~l~~~~~~G~fi~~~~~~~i~~~~~~ee~~ 186 (195)
T 1rcu_A 110 MRSFVLLRNADVVVSIGGEI---GTAIEILGAYALGKPVILLRGTGGWTDRISQVLIDGKYLDNRRIVEIHQAWTVEEAV 186 (195)
T ss_dssp HHHHHHHTTCSEEEEESCCH---HHHHHHHHHHHTTCCEEEETTSCHHHHHGGGGCBTTTBSSTTCCSCEEEESSHHHHH
T ss_pred HHHHHHHHhCCEEEEecCCC---cHHHHHHHHHhcCCCEEEECCCCccHHHHHHHHHcCCcCCHHHcCeEEEeCCHHHHH
Confidence 45556778999999997653 333334455667999999984320 011233467899999999
Q ss_pred HHHHHhC
Q 016025 383 PRVLDVG 389 (396)
Q Consensus 383 ~~L~~~~ 389 (396)
..|.+.+
T Consensus 187 ~~l~~~~ 193 (195)
T 1rcu_A 187 QIIEQIL 193 (195)
T ss_dssp HHHHTC-
T ss_pred HHHHHHh
Confidence 9876543
No 102
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=30.70 E-value=15 Score=29.48 Aligned_cols=14 Identities=29% Similarity=0.581 Sum_probs=11.9
Q ss_pred CcEEEEECCccccc
Q 016025 116 AKLIVLTGAGISTE 129 (396)
Q Consensus 116 k~IVvlTGAGISaa 129 (396)
++|++..|+|+|++
T Consensus 4 kkIll~Cg~G~sTS 17 (106)
T 1e2b_A 4 KHIYLFSSAGMSTS 17 (106)
T ss_dssp EEEEEECSSSTTTH
T ss_pred cEEEEECCCchhHH
Confidence 57999999999876
No 103
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=30.06 E-value=1.3e+02 Score=25.24 Aligned_cols=50 Identities=14% Similarity=0.178 Sum_probs=35.8
Q ss_pred CCCHHHHHHHHHHHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEc
Q 016025 311 NVPKDRADKAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVN 360 (396)
Q Consensus 311 ~lp~~~~~~a~~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN 360 (396)
.++.+.++++.+.+.+++-++++|.+.+-..+..+.....+-|.+...++
T Consensus 21 ~l~~~~i~~~~~~i~~a~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~ 70 (186)
T 1m3s_A 21 YISNEEADQLADHILSSHQIFTAGAGRSGLMAKSFAMRLMHMGFNAHIVG 70 (186)
T ss_dssp TCCHHHHHHHHHHHHHCSCEEEECSHHHHHHHHHHHHHHHHTTCCEEETT
T ss_pred hcCHHHHHHHHHHHHcCCeEEEEecCHHHHHHHHHHHHHHhcCCeEEEeC
Confidence 35666788888999999999999998765555555555555666655554
No 104
>3irb_A Uncharacterized protein from DUF35 family; 13815350, protein with unknown function from DUF35 family, S genomics; 1.80A {Sulfolobus solfataricus}
Probab=29.89 E-value=18 Score=30.74 Aligned_cols=13 Identities=31% Similarity=0.733 Sum_probs=9.1
Q ss_pred cceeeeCCCCccc
Q 016025 222 VYTVVCLDCGFSF 234 (396)
Q Consensus 222 l~~~~C~~C~~~~ 234 (396)
+.-.+|.+|++.+
T Consensus 45 L~~~rC~~CG~~~ 57 (145)
T 3irb_A 45 IIGSKCSKCGRIF 57 (145)
T ss_dssp CEEEECTTTCCEE
T ss_pred EEEEEeCCCCcEE
Confidence 3345899999764
No 105
>3jx9_A Putative phosphoheptose isomerase; YP_001815198.1, structura genomics, joint center for structural genomics, JCSG; HET: MSE; 1.95A {Exiguobacterium sibiricum 255-15}
Probab=29.69 E-value=40 Score=29.46 Aligned_cols=44 Identities=9% Similarity=0.091 Sum_probs=35.8
Q ss_pred HHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcC-CCCCC
Q 016025 323 AAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNV-GETRA 366 (396)
Q Consensus 323 ~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~-~~t~~ 366 (396)
.+...|++|++-+|....-+-++...++++|.++|-|-. ..+..
T Consensus 74 ~i~~~D~vii~S~Sg~n~~~ie~A~~ake~G~~vIaITs~~~~~~ 118 (170)
T 3jx9_A 74 TLHAVDRVLIFTPDTERSDLLASLARYDAWHTPYSIITLGDVTET 118 (170)
T ss_dssp CCCTTCEEEEEESCSCCHHHHHHHHHHHHHTCCEEEEESSCCCTT
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCcEEEEeCcchhcc
Confidence 567899999999999887788888899999999887765 54433
No 106
>4hpq_A ATG31, KLTH0C07942P; autophagy, protein transport; 3.06A {Lachancea thermotolerans cbs 6340}
Probab=29.60 E-value=22 Score=26.51 Aligned_cols=14 Identities=29% Similarity=0.304 Sum_probs=11.8
Q ss_pred ccccceeEEeeccc
Q 016025 11 NQKNTTMLLRLPFF 24 (396)
Q Consensus 11 ~~~~~~~~~~~~~~ 24 (396)
|.+|||...||||-
T Consensus 2 n~~NttVyVRlPg~ 15 (69)
T 4hpq_A 2 NSENTIVYVRVAGR 15 (69)
T ss_dssp CSSSCEEEEECSSC
T ss_pred CCCCeEEEEEecCC
Confidence 77899999999974
No 107
>3fj1_A Putative phosphosugar isomerase; YP_167080.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 1.75A {Silicibacter pomeroyi dss-3}
Probab=28.62 E-value=37 Score=32.68 Aligned_cols=54 Identities=13% Similarity=0.108 Sum_probs=40.6
Q ss_pred HhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEE-cCCCCCCCCcccEEEeCc
Q 016025 324 AKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIV-NVGETRADDLTTLKISAR 377 (396)
Q Consensus 324 ~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiI-N~~~t~~d~~a~l~I~~~ 377 (396)
+.+-|++|++--|..+.-....++.|+++|+++|-| |...+++...+|+.|.-.
T Consensus 89 ~~~~dlvI~iS~SG~T~e~l~a~~~ak~~Ga~~iaIT~~~~S~La~~ad~~l~~~ 143 (344)
T 3fj1_A 89 RLDRALCLAVSQSGKSPDIVAMTRNAGRDGALCVALTNDAASPLAGVSAHTIDIH 143 (344)
T ss_dssp CCTTEEEEEEESSSCCHHHHHHHHHHHHTTCEEEEEESCTTSHHHHTSSEEEECC
T ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHHHHCCCcEEEEECCCCChHHHhcCEeeecC
Confidence 346789999988888888888888999999987655 666666666667665543
No 108
>3hba_A Putative phosphosugar isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE CIT; 2.00A {Shewanella denitrificans OS217}
Probab=28.01 E-value=75 Score=30.37 Aligned_cols=53 Identities=21% Similarity=0.211 Sum_probs=40.8
Q ss_pred hhCCeEEEEccCcchhhHHHHHHHHHHCCCeEE-EEcCCCCCCCCcccEEEeCc
Q 016025 325 KECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIA-IVNVGETRADDLTTLKISAR 377 (396)
Q Consensus 325 ~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lI-iIN~~~t~~d~~a~l~I~~~ 377 (396)
.+-|++|++--|..+.-....++.++++|+++| +.|...+++...+|+.|.-.
T Consensus 89 ~~~dl~i~iS~SG~T~e~~~a~~~ak~~g~~~i~IT~~~~S~la~~ad~~l~~~ 142 (334)
T 3hba_A 89 LAGGLVIVISQSGRSPDILAQARMAKNAGAFCVALVNDETAPIKDIVDVVIPLR 142 (334)
T ss_dssp CTTCEEEEEESSSCCHHHHHHHHHHHHTTCEEEEEESCTTSGGGGTSSEEEECC
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHcCCcEEEEeCCCCChHHHhcCEeeeec
Confidence 467899999889988888888889999998765 44666667777777776543
No 109
>3fxa_A SIS domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Listeria monocytogenes str}
Probab=27.59 E-value=37 Score=29.41 Aligned_cols=53 Identities=15% Similarity=0.148 Sum_probs=39.6
Q ss_pred HHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcC-CCCCCCCcccEEEe
Q 016025 323 AAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNV-GETRADDLTTLKIS 375 (396)
Q Consensus 323 ~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~-~~t~~d~~a~l~I~ 375 (396)
.+.+-|++|++-.|..+.-....++.++++|+++|.|-- ..+++...+|+.|.
T Consensus 89 ~~~~~dvvI~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~l~ 142 (201)
T 3fxa_A 89 VLQKEDILILISKGGNTGELLNLIPACKTKGSTLIGVTENPDSVIAKEADIFFP 142 (201)
T ss_dssp GCCTTCEEEEECSSSCCHHHHTTHHHHHHHTCEEEEEESCTTSHHHHHCSEEEE
T ss_pred cCCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEECCCCChhHHhCCEEEE
Confidence 356779999998888888888888889999999877743 34445555666654
No 110
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=27.52 E-value=51 Score=25.91 Aligned_cols=25 Identities=16% Similarity=0.076 Sum_probs=15.9
Q ss_pred CcCCCCCCcccCcEEEcCCCCCHHHHHHHH
Q 016025 292 PTCQKCNGVLKPDVVFFGDNVPKDRADKAM 321 (396)
Q Consensus 292 P~Cp~Cgg~LRP~VVlFGE~lp~~~~~~a~ 321 (396)
+.||.|+..+... +-+|+..+..+.
T Consensus 64 ~~cP~~~~~l~~~-----~L~pn~~Lk~~I 88 (100)
T 2kre_A 64 PTDPFNRQTLTES-----MLEPVPELKEQI 88 (100)
T ss_dssp SBCSSSCCBCCTT-----SSEECHHHHHHH
T ss_pred CCCCCCCCCCChh-----hceECHHHHHHH
Confidence 5799999987753 334555554443
No 111
>4h08_A Putative hydrolase; GDSL-like lipase/acylhydrolase family protein, structural GE joint center for structural genomics, JCSG; HET: GOL; 1.80A {Bacteroides thetaiotaomicron}
Probab=27.31 E-value=91 Score=26.27 Aligned_cols=14 Identities=21% Similarity=0.710 Sum_probs=9.0
Q ss_pred cCcEEEcCCCCCHH
Q 016025 302 KPDVVFFGDNVPKD 315 (396)
Q Consensus 302 RP~VVlFGE~lp~~ 315 (396)
.|.|+++|+++-..
T Consensus 20 ~prVl~iGDSit~G 33 (200)
T 4h08_A 20 LPHVLLIGNSITRG 33 (200)
T ss_dssp SCEEEEEESHHHHH
T ss_pred CCeEEEEchhHHhh
Confidence 45677777776443
No 112
>2fsv_C NAD(P) transhydrogenase subunit beta; NAD(P) transhydrogenase subunits, oxidoreductas; HET: NAD NAP; 2.30A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1e3t_A* 1hzz_C* 1nm5_C* 1u28_C* 1u2d_C* 1u2g_C* 2fr8_C* 2frd_C*
Probab=26.85 E-value=43 Score=30.19 Aligned_cols=72 Identities=10% Similarity=0.153 Sum_probs=46.1
Q ss_pred HHHHHHHHhhCCeEEEEccCcchhhHHHH-HH---------HHHHCCCeEEEEcCCCC----CCCC-----cccEEEeCc
Q 016025 317 ADKAMEAAKECDAFLVLGSSLMTMSAYRL-VR---------AAHEAGSTIAIVNVGET----RADD-----LTTLKISAR 377 (396)
Q Consensus 317 ~~~a~~~~~~aDllLVvGTSl~V~pa~~L-v~---------~a~~~g~~lIiIN~~~t----~~d~-----~a~l~I~~~ 377 (396)
+++.-+.+.+.|+.||||..=.|-|+++- +. ++- +-..+|.+..+-. -.+. ....-+-||
T Consensus 112 MdeIN~df~~tDv~lVIGANDvVNPaA~~dp~SpI~GMPvL~v~-kAk~ViV~KRsm~~GyAgv~NpLF~~~nt~MlfGD 190 (203)
T 2fsv_C 112 LEEINSSFQTADVAFVIGANDVTNPAAKTDPSSPIYGMPILDVW-KAGTVLFIKRSMASGYAGVENELFFRNNTMMLFGD 190 (203)
T ss_dssp HHHHGGGSTTCSEEEEESCCGGGCGGGTSCTTSTTTTCCCCCGG-GSSEEEEEESSSCCCTTCCCCGGGGSTTEEEEESC
T ss_pred HHHHhhhhhhcCEEEEeccccccCchhhcCCCCCcCCCeeeccc-cCCEEEEEECCCCCCcCCCcCcceecCCceEEecc
Confidence 45556677899999999999988777652 11 011 1124555555431 1111 234558999
Q ss_pred HHHHHHHHHHhC
Q 016025 378 LGEILPRVLDVG 389 (396)
Q Consensus 378 a~evL~~L~~~~ 389 (396)
+.+.+.+|++.+
T Consensus 191 AK~~~~~l~~~l 202 (203)
T 2fsv_C 191 AKKMTEQIVQAM 202 (203)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHh
Confidence 999999998865
No 113
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=26.50 E-value=46 Score=27.79 Aligned_cols=53 Identities=19% Similarity=0.204 Sum_probs=34.3
Q ss_pred cCCCCHHHHHHHHHHHhCCCceeeecCccchHhhhCCCceeec--cccceeeeCCCCcccchh
Q 016025 177 AAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNPLELH--GTVYTVVCLDCGFSFCRD 237 (396)
Q Consensus 177 ~a~Pn~~H~aLa~Le~~g~l~~VITQNIDgLh~kAG~~~iElH--Gsl~~~~C~~C~~~~~~~ 237 (396)
...+...|+.|..|++.|.+..+-..| | ...+++. ..=+.++|..||+.++.+
T Consensus 49 ~is~~TVYR~L~~L~e~Glv~~i~~~~--~------~~~Y~~~~~~~H~HliC~~Cg~v~~~~ 103 (145)
T 3eyy_A 49 GINISTVYRTLELLEELGLVSHAHLGH--G------APTYHLADRHHHIHLVCRDCTNVIEAD 103 (145)
T ss_dssp TCCHHHHHHHHHHHHHHTSEEEEECGG--G------CEEEEETTSCCSEEEEESSSSCEEEEC
T ss_pred CCCHhHHHHHHHHHHHCCcEEEEEeCC--C------ceEEEeCCCCCceEEEECCCCCEEEec
Confidence 345668899999999999876654322 2 1113321 123458999999987543
No 114
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=26.40 E-value=41 Score=23.71 Aligned_cols=14 Identities=36% Similarity=0.854 Sum_probs=9.9
Q ss_pred CCcCCCCCCc-ccCc
Q 016025 291 IPTCQKCNGV-LKPD 304 (396)
Q Consensus 291 iP~Cp~Cgg~-LRP~ 304 (396)
+-.|.+||.. |||-
T Consensus 28 aw~CrKCG~~~lr~k 42 (51)
T 3j21_g 28 AKKCRKCGYKRLRPK 42 (51)
T ss_dssp CSSCSSSSSCCCEEE
T ss_pred ceecCCCCCcccccc
Confidence 5579999874 6663
No 115
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=26.19 E-value=64 Score=24.32 Aligned_cols=19 Identities=21% Similarity=0.259 Sum_probs=12.9
Q ss_pred eeeCCCCcccchhhHHHHH
Q 016025 225 VVCLDCGFSFCRDLFQDQV 243 (396)
Q Consensus 225 ~~C~~C~~~~~~~~~~~~l 243 (396)
-+...||+.|.+..+..++
T Consensus 27 PV~~~cGhtf~r~~I~~~l 45 (85)
T 2kr4_A 27 PVRLPSGTVMDRSIILRHL 45 (85)
T ss_dssp EEECTTSCEEEHHHHHHHH
T ss_pred CeECCCCCEECHHHHHHHH
Confidence 3455689988887765544
No 116
>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3
Probab=25.59 E-value=1.5e+02 Score=25.50 Aligned_cols=48 Identities=13% Similarity=0.182 Sum_probs=35.6
Q ss_pred CHHHHHHHHHHHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEc
Q 016025 313 PKDRADKAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVN 360 (396)
Q Consensus 313 p~~~~~~a~~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN 360 (396)
+.+.++++.+.+.+++-++++|.+.+-..+..+......-|.++..++
T Consensus 33 ~~~~l~~~~~~i~~a~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~ 80 (200)
T 1vim_A 33 DLETVGEMIKLIDSARSIFVIGAGRSGYIAKAFAMRLMHLGYTVYVVG 80 (200)
T ss_dssp CHHHHHHHHHHHHHSSCEEEECSHHHHHHHHHHHHHHHHTTCCEEETT
T ss_pred CHHHHHHHHHHHhcCCEEEEEEecHHHHHHHHHHHHHHhcCCeEEEeC
Confidence 456678888999999999999988776666666655555676666554
No 117
>3knz_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 2.50A {Salmonella enterica subsp}
Probab=25.47 E-value=55 Score=31.77 Aligned_cols=54 Identities=11% Similarity=0.116 Sum_probs=42.9
Q ss_pred HhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEE-EEcCCCCCCCCcccEEEeCc
Q 016025 324 AKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIA-IVNVGETRADDLTTLKISAR 377 (396)
Q Consensus 324 ~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lI-iIN~~~t~~d~~a~l~I~~~ 377 (396)
+.+-|++|++--|..+.-....++.|+++|+++| +.|...+++...+|+.|.-.
T Consensus 95 ~~~~dlvI~iS~SGeT~e~l~a~~~ak~~Ga~~IaIT~~~~S~La~~aD~~l~~~ 149 (366)
T 3knz_A 95 RSGKALVVGISQGGGSLSTLAAMERARNVGHITASMAGVAPATIDRAADYILTVP 149 (366)
T ss_dssp HSCSEEEEEEESSSCCHHHHHHHHHHHHTTCEEEEEESSSSCGGGGGCSEECCCC
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHHcCCCEEEEECCCCChhhhhcCEEEecC
Confidence 4788999999999999888889999999998865 55666777777777776443
No 118
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=25.04 E-value=58 Score=26.54 Aligned_cols=52 Identities=19% Similarity=0.282 Sum_probs=34.4
Q ss_pred cCCCCHHHHHHHHHHHhCCCceeeecCccchHhhhCCCceee--ccccceeeeCCCCcccch
Q 016025 177 AAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNPLEL--HGTVYTVVCLDCGFSFCR 236 (396)
Q Consensus 177 ~a~Pn~~H~aLa~Le~~g~l~~VITQNIDgLh~kAG~~~iEl--HGsl~~~~C~~C~~~~~~ 236 (396)
...+...|+.|..|++.|.+..+-..| |...++. ++.=+.+.|..|++..+.
T Consensus 42 ~is~~TVYR~L~~L~e~Glv~~~~~~~--------~~~~y~~~~~~~h~HliC~~Cg~v~~~ 95 (131)
T 2o03_A 42 NIGLTTVYRTLQSMASSGLVDTLHTDT--------GESVYRRCSEHHHHHLVCRSCGSTIEV 95 (131)
T ss_dssp CCCHHHHHHHHHHHHTTTSEEEEECTT--------SCEEEEECCSSSCEEEEETTTCCEEEE
T ss_pred CCCHhhHHHHHHHHHHCCCEEEEEeCC--------CceEEEeCCCCCCCEEEeCCCCCEEEE
Confidence 445668899999999998876554332 2112443 123456899999987754
No 119
>2aml_A SIS domain protein; 46906266, LMO0035 protein, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=24.62 E-value=75 Score=30.74 Aligned_cols=54 Identities=6% Similarity=0.120 Sum_probs=42.8
Q ss_pred HhhCCeEEEEccCcchhhHHHHHHHHHHC-CCeEE-EEcCCCCCCCCcccEEEeCc
Q 016025 324 AKECDAFLVLGSSLMTMSAYRLVRAAHEA-GSTIA-IVNVGETRADDLTTLKISAR 377 (396)
Q Consensus 324 ~~~aDllLVvGTSl~V~pa~~Lv~~a~~~-g~~lI-iIN~~~t~~d~~a~l~I~~~ 377 (396)
+.+-|++|++--|..+.-....++.|+++ |+++| +.|...+++...+++.|.-.
T Consensus 95 ~~~~dlvI~iS~SG~T~e~l~a~~~ak~~~Ga~vIaIT~~~~S~La~~ad~~l~~~ 150 (373)
T 2aml_A 95 SSHLDLVIGISQSGQSTSTISALERVKKEASVPVVALTSDVTSEIAEFADITLDIG 150 (373)
T ss_dssp CTTCCEEEEECSSSCBHHHHHHHHHHHHHCCCCEEEEESCTTSGGGGGCSEEEECS
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHHhCCCcEEEEECCCCChHHHhcCcceecC
Confidence 56789999999999998888999999998 87654 55666677777778776543
No 120
>1moq_A Glucosamine 6-phosphate synthase; glutamine amidotransferase; HET: GLP MES; 1.57A {Escherichia coli} SCOP: c.80.1.1 PDB: 1mor_A* 1mos_A*
Probab=24.57 E-value=29 Score=33.51 Aligned_cols=53 Identities=17% Similarity=0.137 Sum_probs=40.1
Q ss_pred HhhCCeEEEEccCcchhhHHHHHHHHHHCC-CeEEEE-cCCCCCCCCcccEEEeC
Q 016025 324 AKECDAFLVLGSSLMTMSAYRLVRAAHEAG-STIAIV-NVGETRADDLTTLKISA 376 (396)
Q Consensus 324 ~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g-~~lIiI-N~~~t~~d~~a~l~I~~ 376 (396)
+.+-|++|++--|..+.-....++.++++| +++|-| |...+++...+|+.|.-
T Consensus 97 ~~~~dlvI~iS~SG~T~e~l~a~~~ak~~G~a~viaIT~~~~S~La~~ad~~l~~ 151 (368)
T 1moq_A 97 VRRNSLMITLSQSGETADTLAGLRLSKELGYLGSLAICNVPGSSLVRESDLALMT 151 (368)
T ss_dssp CCTTEEEEEEESSSCCHHHHHHHHHHTTTTCSEEEEEESSTTCHHHHHSSEEEEC
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCCeEEEEECCCCChHHHhCCEEEEc
Confidence 456789999999999888888888999999 776555 66666665666666543
No 121
>3eua_A Putative fructose-aminoacid-6-phosphate deglycase; putative phosphosugar isomerase, structural genomics, joint for structural genomics, JCSG; HET: MSE FLC; 1.90A {Bacillus subtilis}
Probab=24.47 E-value=35 Score=32.57 Aligned_cols=53 Identities=11% Similarity=-0.028 Sum_probs=40.2
Q ss_pred HhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEE-EEcCCCCCCCCcccEEEeC
Q 016025 324 AKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIA-IVNVGETRADDLTTLKISA 376 (396)
Q Consensus 324 ~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lI-iIN~~~t~~d~~a~l~I~~ 376 (396)
+.+-|++|++--|..+.-....++.++++|+++| +.|...+++...+|+.|.-
T Consensus 72 l~~~dlvI~iS~SG~T~e~l~a~~~ak~~Ga~~iaIT~~~~S~La~~ad~~l~~ 125 (329)
T 3eua_A 72 LGEKSLVILCSHSGNTPETVKAAAFARGKGALTIAMTFKPESPLAQEAQYVAQY 125 (329)
T ss_dssp CSTTEEEEEEESSSCCHHHHHHHHHHHHTTCEEEEEESCTTSHHHHHSSEEEEC
T ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHHHHCCCCEEEEECCCCChHHHhCCEEEEe
Confidence 4567899999989998888888889999998855 4566666666666666543
No 122
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=23.97 E-value=1.6e+02 Score=25.11 Aligned_cols=48 Identities=13% Similarity=0.058 Sum_probs=34.7
Q ss_pred CHHHHHHHHHHHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcC
Q 016025 313 PKDRADKAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNV 361 (396)
Q Consensus 313 p~~~~~~a~~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~ 361 (396)
+...++.-.+++.+||+++.+++....--++.+ ..|...|.+++.+..
T Consensus 55 ~~~i~~~d~~~i~~aD~vvA~l~~~d~Gt~~Ei-G~A~algkPV~~l~~ 102 (152)
T 4fyk_A 55 DQFIHEQNLNWLQQADVVVAEVTQPSLGVGYEL-GRAVALGKPILCLFR 102 (152)
T ss_dssp HHHHHHHHHHHHHHCSEEEEECSSCCHHHHHHH-HHHHHTTCCEEEEEC
T ss_pred HHHHHHHHHHHHHHCCEEEEeCCCCCCCHHHHH-HHHHHcCCeEEEEEe
Confidence 445667778899999999999985544444444 356677999888655
No 123
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=23.82 E-value=58 Score=27.33 Aligned_cols=53 Identities=23% Similarity=0.290 Sum_probs=34.0
Q ss_pred cCCCCHHHHHHHHHHHhCCCceeeecCccchHhhhCCCceeec--cccceeeeCCCCcccchh
Q 016025 177 AAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNPLELH--GTVYTVVCLDCGFSFCRD 237 (396)
Q Consensus 177 ~a~Pn~~H~aLa~Le~~g~l~~VITQNIDgLh~kAG~~~iElH--Gsl~~~~C~~C~~~~~~~ 237 (396)
...+...|+.|..|++.|.+..+-..| |...+++. ..=+.++|..|++..+.+
T Consensus 49 ~is~aTVYR~L~~L~e~Glv~~~~~~~--------~~~~Y~~~~~~~H~HliC~~Cg~v~~~~ 103 (150)
T 2w57_A 49 EIGLATVYRVLNQFDDAGIVTRHHFEG--------GKSVFELSTQHHHDHLVCLDCGEVIEFS 103 (150)
T ss_dssp CCCHHHHHHHHHHHHHTTSEEEEECGG--------GCEEEEECCSSCCEEEEETTTCCEEEEC
T ss_pred CCCHHHHHHHHHHHHHCCcEEEEEeCC--------CceEEEecCCCceeEEEECCCCCEEEec
Confidence 445678899999999998876543221 11114431 122468999999887653
No 124
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=23.42 E-value=93 Score=24.21 Aligned_cols=25 Identities=16% Similarity=0.090 Sum_probs=15.9
Q ss_pred CcCCCCCCcccCcEEEcCCCCCHHHHHHHH
Q 016025 292 PTCQKCNGVLKPDVVFFGDNVPKDRADKAM 321 (396)
Q Consensus 292 P~Cp~Cgg~LRP~VVlFGE~lp~~~~~~a~ 321 (396)
+.||.|+..+... +-+|+..+..+.
T Consensus 58 ~~cP~~~~~l~~~-----~L~pn~~Lk~~I 82 (98)
T 1wgm_A 58 QTDPFNRSPLTMD-----QIRPNTELKEKI 82 (98)
T ss_dssp CBCTTTCSBCCTT-----TSEECHHHHHHH
T ss_pred CCCCCCCCCCChh-----hceEcHHHHHHH
Confidence 5799999988753 334555554443
No 125
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=23.32 E-value=3.7e+02 Score=23.41 Aligned_cols=35 Identities=11% Similarity=0.074 Sum_probs=26.7
Q ss_pred hhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCCC
Q 016025 325 KECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGET 364 (396)
Q Consensus 325 ~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~~t 364 (396)
.++|.+|+.++.. ...+..+.+.|.++|.+|....
T Consensus 62 ~~vdgiIi~~~~~-----~~~~~~l~~~~iPvV~i~~~~~ 96 (276)
T 3jy6_A 62 RGFDGLILQSFSN-----PQTVQEILHQQMPVVSVDREMD 96 (276)
T ss_dssp TTCSEEEEESSCC-----HHHHHHHHTTSSCEEEESCCCT
T ss_pred CCCCEEEEecCCc-----HHHHHHHHHCCCCEEEEecccC
Confidence 4799999999876 3455556677999999997644
No 126
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=23.32 E-value=60 Score=26.88 Aligned_cols=53 Identities=23% Similarity=0.276 Sum_probs=33.8
Q ss_pred cCCCCHHHHHHHHHHHhCCCceeeecCccchHhhhCCCceeec---cccceeeeCCCCcccchh
Q 016025 177 AAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNPLELH---GTVYTVVCLDCGFSFCRD 237 (396)
Q Consensus 177 ~a~Pn~~H~aLa~Le~~g~l~~VITQNIDgLh~kAG~~~iElH---Gsl~~~~C~~C~~~~~~~ 237 (396)
...+...|+.|..|++.|.+..+-.. ||. ..+++- +.=+.++|..|++..+.+
T Consensus 45 ~is~aTVYR~L~~L~e~Glv~~~~~~--~g~------~~Y~~~~~~~~H~HliC~~Cg~v~~~~ 100 (139)
T 3mwm_A 45 AVGLTTVYRTLQSLADAGEVDVLRTA--EGE------SVYRRCSTGDHHHHLVCRACGKAVEVE 100 (139)
T ss_dssp CCCHHHHHHHHHHHHHTTSSEEEECT--TSC------EEEECCSCSSCCEEEEETTTCCEEEEC
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEEcC--CCc------eEEEECCCCCCccEEEECCCCCEeecc
Confidence 34566889999999999988655432 221 112221 122458999999987653
No 127
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=22.72 E-value=56 Score=27.91 Aligned_cols=53 Identities=17% Similarity=0.196 Sum_probs=32.8
Q ss_pred cCCCCHHHHHHHHHHHhCCCceeeecCccchHhhhCCCceeec--cccceeeeCCCCcccchh
Q 016025 177 AAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNPLELH--GTVYTVVCLDCGFSFCRD 237 (396)
Q Consensus 177 ~a~Pn~~H~aLa~Le~~g~l~~VITQNIDgLh~kAG~~~iElH--Gsl~~~~C~~C~~~~~~~ 237 (396)
...+...|+.|..|++.|.+..+-. ++ |...+++- ..=+.++|..||+..+.+
T Consensus 66 ~is~aTVYRtL~~L~e~Glv~~i~~---~~-----~~~~Y~~~~~~~H~HliC~~CG~v~e~~ 120 (162)
T 4ets_A 66 NVGIATVYRTLNLLEEAEMVTSISF---GS-----AGKKYELANKPHHDHMICKNCGKIIEFE 120 (162)
T ss_dssp CCCHHHHHHHHHHHHHTTSEEECC-------------CCEEECCCCCCEEEEETTTCCEEEEC
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEEe---CC-----CceEEEeCCCCCccEEEECCCCCEEEec
Confidence 4556788999999999987755432 11 11123332 223458999999977643
No 128
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=22.36 E-value=1.1e+02 Score=25.57 Aligned_cols=49 Identities=10% Similarity=0.085 Sum_probs=35.2
Q ss_pred CCHHHHHHHHHHHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEc
Q 016025 312 VPKDRADKAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVN 360 (396)
Q Consensus 312 lp~~~~~~a~~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN 360 (396)
++.+.++++.+.+.+++-++++|.+.+-..+..+.....+-|.+...++
T Consensus 25 l~~~~i~~~~~~i~~a~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~ 73 (180)
T 1jeo_A 25 EWKNKLDSLIDRIIKAKKIFIFGVGRSGYIGRCFAMRLMHLGFKSYFVG 73 (180)
T ss_dssp HHHHHHHHHHHHHHHCSSEEEECCHHHHHHHHHHHHHHHHTTCCEEETT
T ss_pred CCHHHHHHHHHHHHhCCEEEEEeecHHHHHHHHHHHHHHHcCCeEEEeC
Confidence 3455678888889999999999998766666566555555676665554
No 129
>3g68_A Putative phosphosugar isomerase; SIS domain, double-SIS DOMA protein, structural genomics, joint center for structural G JCSG; HET: MSE CIT; 1.80A {Clostridium difficile}
Probab=22.17 E-value=71 Score=30.70 Aligned_cols=50 Identities=16% Similarity=0.288 Sum_probs=39.4
Q ss_pred hCCeEEEEccCcchhhHHHHHHHHHHCCCeEE-EEcCCCCCCCCcccEEEe
Q 016025 326 ECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIA-IVNVGETRADDLTTLKIS 375 (396)
Q Consensus 326 ~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lI-iIN~~~t~~d~~a~l~I~ 375 (396)
+-|++|++--|..+.-....++.++++|+++| +.|...+++...+|+.|.
T Consensus 82 ~~dlvI~iS~SG~T~e~l~a~~~ak~~ga~~iaIT~~~~S~La~~aD~~l~ 132 (352)
T 3g68_A 82 ENTLVVGVSQGGSSYSTYNAMKLAEDKGCKIASMAGCKNALIDEISDYILT 132 (352)
T ss_dssp TTEEEEEEESSSCCHHHHHHHHHHHHTTCEEEEEESSTTCGGGGGCSEECC
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHCCCCEEEEeCCCCChHHHhCCEEEE
Confidence 67899999999998888888999999998865 446666666677777654
No 130
>3hh1_A Tetrapyrrole methylase family protein; chlorobium tepidum, structural genom 2, protein structure initiative; 1.85A {Chlorobaculum tepidum}
Probab=22.09 E-value=2.9e+02 Score=21.70 Aligned_cols=54 Identities=24% Similarity=0.340 Sum_probs=36.2
Q ss_pred EEcCCCCCHHHHHHHHHHHh-hCCeEEEE--ccCcchhhHHHHHHHHHHCCCeEEEE
Q 016025 306 VFFGDNVPKDRADKAMEAAK-ECDAFLVL--GSSLMTMSAYRLVRAAHEAGSTIAIV 359 (396)
Q Consensus 306 VlFGE~lp~~~~~~a~~~~~-~aDllLVv--GTSl~V~pa~~Lv~~a~~~g~~lIiI 359 (396)
+.|++....+..+.+.+.++ ..++.++. |..+.--+...++..+++.|.++.+|
T Consensus 58 ~~~~~~~~~~~~~~i~~~~~~G~~V~~l~d~GdP~i~~~~~~l~~~~~~~gi~v~vi 114 (117)
T 3hh1_A 58 VSYHSFNEERAVRQVIELLEEGSDVALVTDAGTPAISDPGYTMASAAHAAGLPVVPV 114 (117)
T ss_dssp EECCSTTHHHHHHHHHHHHHTTCCEEEEEETTSCGGGSTTHHHHHHHHHTTCCEEEE
T ss_pred eccCCccHHHHHHHHHHHHHCCCeEEEEecCCcCeEeccHHHHHHHHHHCCCcEEEe
Confidence 34554444444555555554 46776666 98887778888998888888876655
No 131
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=21.81 E-value=53 Score=31.54 Aligned_cols=16 Identities=13% Similarity=0.331 Sum_probs=12.8
Q ss_pred cccceeeeCCCCcccc
Q 016025 220 GTVYTVVCLDCGFSFC 235 (396)
Q Consensus 220 Gsl~~~~C~~C~~~~~ 235 (396)
+...+++|+-|+..+.
T Consensus 204 ~G~R~l~Cs~C~t~W~ 219 (309)
T 2fiy_A 204 TGLRYLSCSLCACEWH 219 (309)
T ss_dssp CCEEEEEETTTCCEEE
T ss_pred CCcEEEEeCCCCCEEe
Confidence 5777899999997664
No 132
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=21.79 E-value=48 Score=24.68 Aligned_cols=15 Identities=27% Similarity=0.514 Sum_probs=11.2
Q ss_pred cccceeeeCCCCccc
Q 016025 220 GTVYTVVCLDCGFSF 234 (396)
Q Consensus 220 Gsl~~~~C~~C~~~~ 234 (396)
+.+-+++|..|....
T Consensus 3 S~Fm~VKCp~C~niq 17 (66)
T 1qxf_A 3 SRFVKVKCPDCEHEQ 17 (66)
T ss_dssp CCEEEEECTTTCCEE
T ss_pred ceeEEEECCCCCCce
Confidence 456678999999753
No 133
>3fkj_A Putative phosphosugar isomerases; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.12A {Salmonella typhimurium LT2}
Probab=21.39 E-value=44 Score=32.19 Aligned_cols=56 Identities=14% Similarity=0.122 Sum_probs=41.1
Q ss_pred HhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEE-EEcCCCCCCCCcccEEEeCcHH
Q 016025 324 AKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIA-IVNVGETRADDLTTLKISARLG 379 (396)
Q Consensus 324 ~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lI-iIN~~~t~~d~~a~l~I~~~a~ 379 (396)
+.+-|++|++--|..+.-....++.++++|+++| +.|...+++...+|+.|.-.++
T Consensus 87 l~~~dlvI~iS~SG~T~e~l~a~~~ak~~Ga~~iaIT~~~~S~La~~ad~~l~~~~g 143 (347)
T 3fkj_A 87 LGKNSVVILASQQGNTAETVAAARVAREKGAATIGLVYQPDTPLCEYSDYIIEYQWA 143 (347)
T ss_dssp CSTTEEEEEEESSSCCHHHHHHHHHHHHHTCEEEEEESSTTCHHHHTCSEEEECBCC
T ss_pred CCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCcEEEEeCCCCChHHhhcCeEEEeccC
Confidence 4567899999888888888888888988898755 4466666666666776654443
No 134
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=20.83 E-value=93 Score=25.78 Aligned_cols=52 Identities=13% Similarity=0.245 Sum_probs=33.5
Q ss_pred cCCCCHHHHHHHHHHHhCCCceeeecCccchHhhhCCCceeecc-ccceeeeCCCCcccch
Q 016025 177 AAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNPLELHG-TVYTVVCLDCGFSFCR 236 (396)
Q Consensus 177 ~a~Pn~~H~aLa~Le~~g~l~~VITQNIDgLh~kAG~~~iElHG-sl~~~~C~~C~~~~~~ 236 (396)
...+...|+.|..|++.|.+..+-..| |...+++.+ .=+.++|..||+..+.
T Consensus 53 ~is~aTVYR~L~~L~e~Glv~~~~~~~--------~~~~Y~~~~~~H~HliC~~Cg~v~~~ 105 (145)
T 2fe3_A 53 NMSVATVYNNLRVFRESGLVKELTYGD--------ASSRFDFVTSDHYHAICENCGKIVDF 105 (145)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEECCTT--------SCCEEEECCCCEEEEEETTTCCEEEC
T ss_pred CCChhhHHHHHHHHHHCCCEEEEeeCC--------CceEEECCCCCcceEEECCCCCEEEe
Confidence 445668899999999998876554333 111133211 1245899999987764
No 135
>2a3n_A Putative glucosamine-fructose-6-phosphate aminotr; structural genomics, joint center for structural genomics; HET: MSE; 1.23A {Salmonella typhimurium}
Probab=20.47 E-value=74 Score=30.45 Aligned_cols=54 Identities=13% Similarity=0.149 Sum_probs=41.3
Q ss_pred HhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEE-cCCCCCCCCcccEEEeCc
Q 016025 324 AKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIV-NVGETRADDLTTLKISAR 377 (396)
Q Consensus 324 ~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiI-N~~~t~~d~~a~l~I~~~ 377 (396)
+.+-|++|++--|..+.-....++.|+++|+++|.| |...+++...+|+.|.-.
T Consensus 100 l~~~dlvI~iS~SG~t~e~~~a~~~ak~~Ga~vi~IT~~~~S~La~~ad~~l~~~ 154 (355)
T 2a3n_A 100 LNKDSVVITLSKSGDTKESVAIAEWCKAQGIRVVAITKNADSPLAQAATWHIPMR 154 (355)
T ss_dssp CCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEESCTTSHHHHTCSEEEECC
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCChhhHhCCEEEEeC
Confidence 357899999999999988888999999999876555 555566666677766543
Done!