Query 016026
Match_columns 396
No_of_seqs 235 out of 345
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 03:06:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016026.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016026hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2502 Tub family proteins [G 100.0 6E-120 1E-124 891.1 26.2 324 1-396 1-355 (355)
2 PF01167 Tub: Tub family; Int 100.0 7.1E-75 1.5E-79 554.2 18.3 216 118-390 1-246 (246)
3 KOG2503 Tubby superfamily prot 99.8 1.6E-19 3.5E-24 185.4 4.3 79 293-392 485-563 (565)
4 PF12937 F-box-like: F-box-lik 97.7 1.3E-05 2.8E-10 57.9 0.7 36 54-97 1-36 (47)
5 PF00646 F-box: F-box domain; 97.6 1.3E-05 2.9E-10 57.4 -0.5 39 53-99 2-40 (48)
6 PLN03215 ascorbic acid mannose 97.2 0.0004 8.7E-09 71.4 5.4 106 52-173 2-114 (373)
7 smart00256 FBOX A Receptor for 96.7 0.00035 7.5E-09 47.7 -0.2 34 57-98 1-34 (41)
8 PF12043 DUF3527: Domain of un 96.6 0.0027 5.9E-08 64.8 5.0 59 316-391 286-344 (346)
9 KOG2997 F-box protein FBX9 [Ge 87.2 0.31 6.7E-06 49.9 1.6 43 51-96 101-146 (366)
10 KOG2120 SCF ubiquitin ligase, 45.9 5.3 0.00011 41.4 -0.8 66 54-127 98-166 (419)
11 COG1660 Predicted P-loop-conta 39.3 17 0.00036 36.8 1.5 47 26-77 6-52 (286)
12 PF14642 FAM47: FAM47 family 21.3 36 0.00078 34.1 0.4 36 55-100 139-177 (258)
13 PF03668 ATP_bind_2: P-loop AT 20.6 47 0.001 33.6 1.1 44 26-74 6-49 (284)
No 1
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=100.00 E-value=5.9e-120 Score=891.13 Aligned_cols=324 Identities=58% Similarity=0.929 Sum_probs=278.1
Q ss_pred CchhhhhhhhcccCCccccccceeccCCcCCCCcccCcccccCCcccccccCccCCCChHHHHHHHHHhhhcCCCCCCcc
Q 016026 1 MSFRSIVRDVRDGFGSLSRRSFEVRLPGHHGRGKSHGSVHELHDQPVVIQNSRWAGLPPELLRDVIKRLEASESTWPARK 80 (396)
Q Consensus 1 m~~~s~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wa~lppell~dv~~r~e~se~~wp~r~ 80 (396)
|+++++++++++.. +|+.+....+ ++. +..+++.. .+.....+.|++||||||+|+|+|+||+|+.||+|+
T Consensus 1 ~~~~~~~~~~~~~~------~~~~~~~~~~-~~~-~~~~~~~~-~~s~~~~~~~~~l~~~~L~d~~~r~eese~~wp~r~ 71 (355)
T KOG2502|consen 1 MGEDGPVRDPEDKS------SFRAPQGSGT-KGP-EDKSEDSG-FPSPSDQSLWAALPPELLSDVLKRDEESEDTWPSRR 71 (355)
T ss_pred CCccCccCCCCccc------chhccccccc-ccC-CCccCCcC-CccccccchhhcCCHhHHHHHhhhcccccccccccc
Confidence 78999999998876 4554443222 111 22233321 111112289999999999999999999999999999
Q ss_pred ceeeecccchhHHHHHHhhhcCCcccccccccccccCCCCCCceEEEEEEEecCCceEEEEeecCC--------------
Q 016026 81 HVVACAAVCRSWREMCKEIVRNPEFSGKITFPVSLKQPGPRDGTIQCFIKRDKSNLTYHLFLCLSP-------------- 146 (396)
Q Consensus 81 ~vvaca~vc~~wr~~~~eiv~~pe~~g~itfpisLkqPgPrd~~iQCfIkRdK~~~tY~LYL~l~~-------------- 146 (396)
+||+||+||+.||++++|||+.||.+|++|||++|+||||+|.++||+|+|||+|++|+||+++.+
T Consensus 72 ~vvs~~~~~~~~r~~~~~~v~~~~~~~k~~~~~~l~qP~P~~~~~qC~I~Rdks~~~~~Ly~~l~~~l~~~d~~kfLLaa 151 (355)
T KOG2502|consen 72 NVVSCAGVCDKWREISKEIVAPPEPSSKLTFPASLKQPGPRGVLVQCYIKRDKSGMDRGLYLSLYLHLEREDNKKFLLAA 151 (355)
T ss_pred ccccccchhhhhhhhccccccCCccccccchhHHhcCCCCCCceEEEEEEEccCCCceeeeecccccccccccceeeeee
Confidence 999999999999999999999999999999999999999999999999999999999999998743
Q ss_pred -----------------CCcccCCCceeeeeeecccccEEEEEcCCCCCCCCCCCCCCCCccccccccCCCCCCCceeeE
Q 016026 147 -----------------DNISRSSSTYIGKLRSNFLGTKFIIYDTQPPYNSAQLSPPGRSRRFYSKKVSPKVPTGSYNIA 209 (396)
Q Consensus 147 -----------------~dlSR~S~~YVGKLRSNFlGTkFtIYD~g~p~~~a~~~~~~rsrr~~sk~vsprvp~~~~ela 209 (396)
+||||++++||||||||||||||||||+|... +|+++ ++|+++|+||
T Consensus 152 rk~rr~~~t~yiiS~d~~~lSr~~~~yvGklRSN~lGTKFtVyD~g~~~----------~r~~~------~~~~~~~~la 215 (355)
T KOG2502|consen 152 RKRRRSKTTNYLISLDPTDLSRGSESYVGKLRSNLLGTKFTVYDNGVNP----------SRRFN------KVPSGRQELA 215 (355)
T ss_pred eeecccccceeEEeccccccccCccceeeeeecccccceEEEecCCCCc----------ccccc------cCCcccceee
Confidence 79999999999999999999999999996421 23333 7899999999
Q ss_pred EEEeeecccCCCCCceeEEeecCCCccccCCCCCCCCCCccCCCCccccccccCcccccccccccCccccccCCCCCccc
Q 016026 210 QVSYELNVLGTRGPRRMHCTMHSIPASALEPGGSVPGQAELNPRSLEDSFRNFSKSIDVSTEFSSSRFSDIVGPRDEEDE 289 (396)
Q Consensus 210 ~V~Ye~NVLG~rGPRrM~cim~~IP~s~l~~gg~~p~q~~~~~~~~~e~f~s~s~~~d~~~~~~s~~~s~~~~~~~~~~~ 289 (396)
+|+||+||||+||||||+|+|++||.++ +||++|.|++..... ..|+.. ..
T Consensus 216 ~V~Ye~NVLg~rGPRrM~~im~~i~~s~--~~~~v~~q~~~~~~~--~l~r~~-------------------------~k 266 (355)
T KOG2502|consen 216 AVIYETNVLGFRGPRRMTVIMPGISPSA--PGGRVPVQPENDHPS--LLFRSQ-------------------------NK 266 (355)
T ss_pred EEEEeeccccccCCceeEEeccCCCCCC--CCCcccccccccccc--hhhhcc-------------------------cc
Confidence 9999999999999999999999999987 899999998732111 112211 11
Q ss_pred CCCCceEeecCCCcccccccceEeecCCeeeeccccceEEEeccCCCCCCCCCCCCCCCCCCCCCceEEEeeecCCCeeE
Q 016026 290 GKDRPLILRNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPAAGAPTPSQPPPPPPSDHDKIILQFGKVGKDMFT 369 (396)
Q Consensus 290 ~~~~~lvL~nK~P~W~e~lq~~~LnF~GRVt~aSVKNFQLv~~~~p~~~~~~~~q~~~~~~~~~~~viLQFGKv~kd~Ft 369 (396)
.++++++|+||+|+|||++||||||||||||+||||||||||+ .++++|||||||||||+||
T Consensus 267 ~~e~~lvL~NK~P~wne~~q~~~LNF~GRVT~ASVKNFQLv~~------------------~~p~~iiLQFGrV~kD~FT 328 (355)
T KOG2502|consen 267 DKEGLLVLKNKTPRWNEETQSYCLNFHGRVTQASVKNFQLVHA------------------LDPEYIILQFGRVGKDVFT 328 (355)
T ss_pred CcccceEeecCCCccccccceEEEecCCeEEEeeecceEEecc------------------CCCCEEEEEeeeeccceee
Confidence 3689999999999999999999999999999999999999994 3559999999999999999
Q ss_pred EEccCCCCHHHHHHHHHHhCccccccC
Q 016026 370 MDYRYPLSAFQAFAICLSSFDTKLACE 396 (396)
Q Consensus 370 mD~ryPlS~~QAFAIcLssfdtKlACE 396 (396)
|||||||||||||||||||||+|||||
T Consensus 329 mDYrYPlSa~QAFaIcLSSFdtKlaCe 355 (355)
T KOG2502|consen 329 MDYRYPLSAFQAFAICLSSFDTKLACE 355 (355)
T ss_pred ecccCccHHHHHHHHHHHhccccccCC
Confidence 999999999999999999999999998
No 2
>PF01167 Tub: Tub family; InterPro: IPR000007 Tubby, an autosomal recessive mutation, mapping to mouse chromosome 7, was recently found to be the result of a splicing defect in a novel gene with unknown function. This mutation maps to the tub gene [, ]. The mouse tubby mutation is the cause of maturity-onset obesity, insulin resistance and sensory deficits. By contrast with the rapid juvenile-onset weight gain seen in diabetes (db) and obese (ob) mice, obesity in tubby mice develops gradually, and strongly resembles the late-onset obesity observed in the human population. Excessive deposition of adipose tissue culminates in a two-fold increase of body weight. Tubby mice also suffer retinal degeneration and neurosensory hearing loss. The tripartite character of the tubby phenotype is highly similar to human obesity syndromes, such as Alstrom and Bardet-Biedl. Although these phenotypes indicate a vital role for tubby proteins, no biochemical function has yet been ascribed to any family member [], although it has been suggested that the phenotypic features of tubby mice may be the result of cellular apoptosis triggered by expression of the mutated tub gene. TUB is the founding-member of the tubby-like proteins, the TULPs. TULPs are found in multicellular organisms from both the plant and animal kingdoms. Ablation of members of this protein family cause disease phenotypes that are indicative of their importance in nervous-system function and development []. Mammalian TUB is a hydrophilic protein of ~500 residues. The N-terminal (IPR005398 from INTERPRO) portion of the protein is conserved neither in length nor sequence, but, in TUB, contains the nuclear localisation signal and may have transcriptional-activation activity. The C-terminal 250 residues are highly conserved. The C-terminal extremity contains a cysteine residue that might play an important role in the normal functioning of these proteins. The crystal structure of the C-terminal core domain from mouse tubby has been determined to 1.9A resolution. This domain is arranged as a 12-stranded, all anti-parallel, closed beta-barrel that surrounds a central alpha helix, (which is at the extreme carboxyl terminus of the protein) that forms most of the hydrophobic core. Structural analyses suggest that TULPs constitute a unique family of bipartite transcription factors [].; PDB: 3C5N_B 2FIM_A 1I7E_A 1C8Z_A 1S31_A.
Probab=100.00 E-value=7.1e-75 Score=554.25 Aligned_cols=216 Identities=59% Similarity=0.976 Sum_probs=158.8
Q ss_pred CCCCCceEEEEEEEecCCc------eEEEEeecCC------------------------CCcccCCCceeeeeeeccccc
Q 016026 118 PGPRDGTIQCFIKRDKSNL------TYHLFLCLSP------------------------DNISRSSSTYIGKLRSNFLGT 167 (396)
Q Consensus 118 PgPrd~~iQCfIkRdK~~~------tY~LYL~l~~------------------------~dlSR~S~~YVGKLRSNFlGT 167 (396)
|||+|++|||+|+|||+|+ +|+|||+... +|+||++++|||||||||+||
T Consensus 1 P~P~~~~vqC~I~R~k~g~~~~lyp~y~l~l~~~~~kfLLaArK~~~s~~s~YiIS~~~~dlsr~s~~yvGKLrsNf~GT 80 (246)
T PF01167_consen 1 PGPRGGPVQCFIRRDKSGLTRGLYPGYYLYLEGENGKFLLAARKRKRSKTSNYIISLDPDDLSRSSNNYVGKLRSNFLGT 80 (246)
T ss_dssp B--TT-EEEEEEEEESTTCCCT---EEEEEEESTTSEEEEEEEEECSSSSEEEEEESSHHHHCTT---ESEEEEE-TTSS
T ss_pred CCCCCcEEEEEEEEECCCCCcccCcEeEeccccCCCcEEEeeeecccCCCcceEEecCCCccccCCCceeeeecccccee
Confidence 8999999999999999986 6778887322 699999999999999999999
Q ss_pred EEEEEcCCCCCCCCCCCCCCCCccccccccCCCCCCCceeeEEEEeeecccCCCCCceeEEeecCCCccccCCCCCCCCC
Q 016026 168 KFIIYDTQPPYNSAQLSPPGRSRRFYSKKVSPKVPTGSYNIAQVSYELNVLGTRGPRRMHCTMHSIPASALEPGGSVPGQ 247 (396)
Q Consensus 168 kFtIYD~g~p~~~a~~~~~~rsrr~~sk~vsprvp~~~~ela~V~Ye~NVLG~rGPRrM~cim~~IP~s~l~~gg~~p~q 247 (396)
+|||||+|++++.+.. .+|+.+..++|||+|.||+||||+||||||+|+|++|+.+..++++.+|.+
T Consensus 81 ~F~iyD~g~~~~~~~~-------------~~~~~~~~r~eLa~V~Ye~nvlg~rGPRkM~v~ip~i~~~~~~~~~~~~~~ 147 (246)
T PF01167_consen 81 EFTIYDNGPNPKKSKS-------------ISPREPQIRRELAAVSYETNVLGSRGPRKMTVVIPSIPSSGQESGGRVPFQ 147 (246)
T ss_dssp EEEEEESSB-CCCSTC-------------CTSCCSSB--EEEEEEEEE-SSSTTSSEEEEEEEE-B-TTS-----B----
T ss_pred EEEEECCCCCCccccc-------------cCcCcCcCcceEEEEEEEeccccccCCcEEEEEecCCCccccccceeeeee
Confidence 9999999987765432 256677889999999999999999999999999999999888777777665
Q ss_pred CccCCCCccccccccCcccccccccccCccccccCCCCCcccCCCCceEeecCCCcccccccceEeecCCeeeeccccce
Q 016026 248 AELNPRSLEDSFRNFSKSIDVSTEFSSSRFSDIVGPRDEEDEGKDRPLILRNKAPRWHEQLQCWCLNFRGRVTVASVKNF 327 (396)
Q Consensus 248 ~~~~~~~~~e~f~s~s~~~d~~~~~~s~~~s~~~~~~~~~~~~~~~~lvL~nK~P~W~e~lq~~~LnF~GRVt~aSVKNF 327 (396)
+... ..++. ...+ .....+++++|+||+|+||++++||||||+||||+||||||
T Consensus 148 p~~~---~~~~~---------~~~~--------------~~~~~~~~~~l~~k~P~w~~~~~~~~l~F~gRv~~~SvKNF 201 (246)
T PF01167_consen 148 PLNQ---EKDSL---------LSRF--------------QNKKKDELIVLKNKPPRWNEELQSYVLNFNGRVTVASVKNF 201 (246)
T ss_dssp -SS----CCCSH---------HHHH--------------HCT-TTSEEEEEE---EEETTTTEEEEEETTSECC-BTTEE
T ss_pred cccc---ccccc---------cccc--------------cccCCcceEEEecCCCcEeccCCeEEeccCCeEecccccee
Confidence 3200 00000 0001 11246789999999999999999999999999999999999
Q ss_pred EEEeccCCCCCCCCCCCCCCCCCCCCCceEEEeeecCCCeeEEEccCCCCHHHHHHHHHHhCc
Q 016026 328 QLIAATQPAAGAPTPSQPPPPPPSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFD 390 (396)
Q Consensus 328 QLv~~~~p~~~~~~~~q~~~~~~~~~~~viLQFGKv~kd~FtmD~ryPlS~~QAFAIcLssfd 390 (396)
|||+. ++++++|||||||++|+|+|||+|||||||||||||||||
T Consensus 202 ql~~~------------------~~~~~~~lqfGk~~~~~f~~d~~~Pls~~qAF~i~lssfd 246 (246)
T PF01167_consen 202 QLVHP------------------SDPDRIVLQFGKVGKDVFTMDFRYPLSPLQAFAIALSSFD 246 (246)
T ss_dssp EEEBT------------------TBTTSESEEEEEEETTEEEEEEETT-BHHHHHHHHHHHHH
T ss_pred EEEcc------------------CCCCeEEEEEEEecCCEEEEEecCCCCHHHHHHHHHhcCC
Confidence 99983 5778999999999999999999999999999999999998
No 3
>KOG2503 consensus Tubby superfamily protein TULP4 [General function prediction only]
Probab=99.77 E-value=1.6e-19 Score=185.42 Aligned_cols=79 Identities=42% Similarity=0.760 Sum_probs=71.8
Q ss_pred CceEeecCCCcccccccceEeecCCeeeeccccceEEEeccCCCCCCCCCCCCCCCCCCCCCceEEEeeecCCCeeEEEc
Q 016026 293 RPLILRNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPAAGAPTPSQPPPPPPSDHDKIILQFGKVGKDMFTMDY 372 (396)
Q Consensus 293 ~~lvL~nK~P~W~e~lq~~~LnF~GRVt~aSVKNFQLv~~~~p~~~~~~~~q~~~~~~~~~~~viLQFGKv~kd~FtmD~ 372 (396)
+..++.||+|.|||+.|-|+|||.||||..|.||||+-. ..+-|||||+|+.+.||+||
T Consensus 485 R~~vmtnK~p~wne~tqVyqlDfgGrVtqesakNfQIel---------------------~gkQvmqFgRidg~aytldf 543 (565)
T KOG2503|consen 485 RCEVMTNKPPAWNEHTQVYQLDFGGRVTQESAKNFQIEL---------------------FGKQVMQFGRIDGPAYTLDF 543 (565)
T ss_pred eEEEeecCCccccccceEEEeccCCccchhhhccceEee---------------------cchhhheeccccCCcccCCC
Confidence 446999999999999999999999999999999999965 23459999999999999999
Q ss_pred cCCCCHHHHHHHHHHhCccc
Q 016026 373 RYPLSAFQAFAICLSSFDTK 392 (396)
Q Consensus 373 ryPlS~~QAFAIcLssfdtK 392 (396)
+||+|+.||||+||++.-..
T Consensus 544 qypfSa~QaFavalanvtqR 563 (565)
T KOG2503|consen 544 QYPFSAGQAFAVALANVTQR 563 (565)
T ss_pred CCchHHHHHHHHHHhhhhhh
Confidence 99999999999999986544
No 4
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=97.67 E-value=1.3e-05 Score=57.90 Aligned_cols=36 Identities=28% Similarity=0.695 Sum_probs=30.5
Q ss_pred cCCCChHHHHHHHHHhhhcCCCCCCccceeeecccchhHHHHHH
Q 016026 54 WAGLPPELLRDVIKRLEASESTWPARKHVVACAAVCRSWREMCK 97 (396)
Q Consensus 54 wa~lppell~dv~~r~e~se~~wp~r~~vvaca~vc~~wr~~~~ 97 (396)
|..||+|+|..|+..++.. ++..|+.|||.|++++.
T Consensus 1 i~~LP~Eil~~If~~L~~~--------dl~~~~~vcr~w~~~~~ 36 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPR--------DLLRLSLVCRRWRRIAN 36 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HH--------HHHHHTTSSHHHHHHHT
T ss_pred ChHhHHHHHHHHHhcCCHH--------HHHHHHHHHHHHHHHHC
Confidence 7899999999999887653 68999999999999884
No 5
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=97.56 E-value=1.3e-05 Score=57.42 Aligned_cols=39 Identities=21% Similarity=0.569 Sum_probs=32.3
Q ss_pred ccCCCChHHHHHHHHHhhhcCCCCCCccceeeecccchhHHHHHHhh
Q 016026 53 RWAGLPPELLRDVIKRLEASESTWPARKHVVACAAVCRSWREMCKEI 99 (396)
Q Consensus 53 ~wa~lppell~dv~~r~e~se~~wp~r~~vvaca~vc~~wr~~~~ei 99 (396)
.|.+||+|++.+|+.+++-.+ +++|+.||+.|+.++++.
T Consensus 2 ~~~~LP~~il~~Il~~l~~~~--------~~~l~~vsk~~~~~~~~~ 40 (48)
T PF00646_consen 2 PLSDLPDEILQEILSYLDPKD--------LLRLSLVSKRWRSLVDSP 40 (48)
T ss_dssp HHHHS-HHHHHHHHHTS-HHH--------HHHHCTT-HHHHHHHTTH
T ss_pred CHHHCCHHHHHHHHHHCcHHH--------HHHHHHHhhHHHHHHcCC
Confidence 488999999999999999854 999999999999998754
No 6
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=97.24 E-value=0.0004 Score=71.36 Aligned_cols=106 Identities=22% Similarity=0.383 Sum_probs=65.5
Q ss_pred CccCCCChHHHHHHHHHhhhcCCCCCCccceeeecccchhHHHHHHhhh-cCCcccccccccccccC---CCCCCceEEE
Q 016026 52 SRWAGLPPELLRDVIKRLEASESTWPARKHVVACAAVCRSWREMCKEIV-RNPEFSGKITFPVSLKQ---PGPRDGTIQC 127 (396)
Q Consensus 52 ~~wa~lppell~dv~~r~e~se~~wp~r~~vvaca~vc~~wr~~~~eiv-~~pe~~g~itfpisLkq---PgPrd~~iQC 127 (396)
..|+.||+|||+.|..|+. .+-+++-=++||++||..+...- ++|-.+ . ..+-+++ +.|-.. -.|
T Consensus 2 ~~Ws~Lp~dll~~i~~~l~-------~~~d~~~~~~vC~sWr~a~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~-~~~ 70 (373)
T PLN03215 2 ADWSTLPEELLHMIAGRLF-------SNVELKRFRSICRSWRSSVSGVGKKNPFRT-R--PLILFNPINPSETLTD-DRS 70 (373)
T ss_pred CChhhCCHHHHHHHHhhCC-------cHHHHHHHHhhhhhHHHhcccccccCCccc-c--cccccCcccCCCCccc-ccc
Confidence 3699999999999999993 45678888999999999766432 222111 1 1111222 334333 778
Q ss_pred EEEEecCCc---eEEEEeecCCCCcccCCCceeeeeeecccccEEEEEc
Q 016026 128 FIKRDKSNL---TYHLFLCLSPDNISRSSSTYIGKLRSNFLGTKFIIYD 173 (396)
Q Consensus 128 fIkRdK~~~---tY~LYL~l~~~dlSR~S~~YVGKLRSNFlGTkFtIYD 173 (396)
+|++...-. +++..- +.. + .+...+.|+..+--+-|+.+.+
T Consensus 71 ~~~~~~~~ls~~~~~r~~-~~~-~---~~~~WLik~~~~~~~~~~~Ll~ 114 (373)
T PLN03215 71 YISRPGAFLSRAAFFRVT-LSS-S---PSKGWLIKSDMDVNSGRFHLLN 114 (373)
T ss_pred ccccccceeeeeEEEEee-cCC-C---CCCCcEEEEeccccCCccEecC
Confidence 888843322 333332 221 1 3566788887776666776664
No 7
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=96.73 E-value=0.00035 Score=47.75 Aligned_cols=34 Identities=29% Similarity=0.691 Sum_probs=29.7
Q ss_pred CChHHHHHHHHHhhhcCCCCCCccceeeecccchhHHHHHHh
Q 016026 57 LPPELLRDVIKRLEASESTWPARKHVVACAAVCRSWREMCKE 98 (396)
Q Consensus 57 lppell~dv~~r~e~se~~wp~r~~vvaca~vc~~wr~~~~e 98 (396)
||+|++.+|+.+++. +++.+|+.||+.|+.++++
T Consensus 1 lP~~ll~~I~~~l~~--------~d~~~~~~vc~~~~~~~~~ 34 (41)
T smart00256 1 LPDEILEEILSKLPP--------KDLLRLRKVSRRWRSLIDS 34 (41)
T ss_pred CCHHHHHHHHHcCCH--------HHHHHHHHHHHHHHHHhcC
Confidence 799999999998863 5788999999999998753
No 8
>PF12043 DUF3527: Domain of unknown function (DUF3527); InterPro: IPR021916 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 120 amino acids in length. This domain has a conserved CDCGGWD sequence motif.
Probab=96.59 E-value=0.0027 Score=64.75 Aligned_cols=59 Identities=20% Similarity=0.480 Sum_probs=46.7
Q ss_pred CCeeeeccccceEEEeccCCCCCCCCCCCCCCCCCCCCCceEEEeeecCCCeeEEEccCCCCHHHHHHHHHHhCcc
Q 016026 316 RGRVTVASVKNFQLIAATQPAAGAPTPSQPPPPPPSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDT 391 (396)
Q Consensus 316 ~GRVt~aSVKNFQLv~~~~p~~~~~~~~q~~~~~~~~~~~viLQFGKv~kd~FtmD~ryPlS~~QAFAIcLssfdt 391 (396)
..+.+.+.-+=|.|.... ..++..+|-|--|.++.|.+||+-.||++|||+||++-.+.
T Consensus 286 ~~~~~~~~~~~feLf~QG-----------------~~~~~P~~sm~~v~~G~Y~V~F~s~lS~LQAFSiciA~lh~ 344 (346)
T PF12043_consen 286 KSSSSKESSHPFELFVQG-----------------SKEEDPAFSMVNVKEGLYSVEFHSSLSPLQAFSICIAVLHS 344 (346)
T ss_pred ccccccccCCceeeeecc-----------------cccCCCceEEEEccCCeEEEEecCcchHHHHHHHhheeeec
Confidence 355566677789997521 23333899999999999999999999999999999986553
No 9
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=87.17 E-value=0.31 Score=49.88 Aligned_cols=43 Identities=19% Similarity=0.336 Sum_probs=33.5
Q ss_pred cCccCC---CChHHHHHHHHHhhhcCCCCCCccceeeecccchhHHHHH
Q 016026 51 NSRWAG---LPPELLRDVIKRLEASESTWPARKHVVACAAVCRSWREMC 96 (396)
Q Consensus 51 ~~~wa~---lppell~dv~~r~e~se~~wp~r~~vvaca~vc~~wr~~~ 96 (396)
|++|-+ ||+|+|..|+++|=.+--. -+..+.||.||+.|+-.+
T Consensus 101 qp~~~~~~~LPdEvLm~I~~~vv~~~~d---~rsL~~~s~vCr~F~~~~ 146 (366)
T KOG2997|consen 101 QPELISISVLPDEVLMRIFRWVVSSLLD---LRSLEQLSLVCRGFYKCA 146 (366)
T ss_pred chhhhhhhhCCHHHHHHHHHHHHhhhcc---hhhHHHhHhhHHHHHHHH
Confidence 678866 9999999999999754321 245688999999987655
No 10
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=45.87 E-value=5.3 Score=41.36 Aligned_cols=66 Identities=18% Similarity=0.442 Sum_probs=49.0
Q ss_pred cCCCChHHHHHHHHHhhhcCCCCCCccceeeecccchhHHHHHHh--hhcCCcccccccccccccCCCCCCce-EEE
Q 016026 54 WAGLPPELLRDVIKRLEASESTWPARKHVVACAAVCRSWREMCKE--IVRNPEFSGKITFPVSLKQPGPRDGT-IQC 127 (396)
Q Consensus 54 wa~lppell~dv~~r~e~se~~wp~r~~vvaca~vc~~wr~~~~e--iv~~pe~~g~itfpisLkqPgPrd~~-iQC 127 (396)
|.+||.|+|.+|.. |=..|....-++||++|-.+..+ +-.....-|+---|.+|-|=--|+.. ++|
T Consensus 98 ~~slpDEill~IFs--------~L~kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r~i~p~~l~~l~~rgV~v~Rl 166 (419)
T KOG2120|consen 98 WDSLPDEILLGIFS--------CLCKKELLKVSGVCKRFYRLASDESLWQTLDLTGRNIHPDVLGRLLSRGVIVFRL 166 (419)
T ss_pred cccCCHHHHHHHHH--------hccHHHHHHHHHHHHHHhhccccccceeeeccCCCccChhHHHHHHhCCeEEEEc
Confidence 99999999999985 55667888889999999988754 34455666776677776655555533 444
No 11
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=39.27 E-value=17 Score=36.80 Aligned_cols=47 Identities=30% Similarity=0.406 Sum_probs=32.2
Q ss_pred cCCcCCCCcccCcccccCCcccccccCccCCCChHHHHHHHHHhhhcCCCCC
Q 016026 26 LPGHHGRGKSHGSVHELHDQPVVIQNSRWAGLPPELLRDVIKRLEASESTWP 77 (396)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~wa~lppell~dv~~r~e~se~~wp 77 (396)
++|.+|-|||. +...++| ..=-|=.||||+||-+.++.++++++.-+
T Consensus 6 VTGlSGAGKsv-Al~~lED----lGyycvDNLPp~Llp~~~~~~~~~~~~~~ 52 (286)
T COG1660 6 VTGLSGAGKSV-ALRVLED----LGYYCVDNLPPQLLPKLADLMLTLESRIT 52 (286)
T ss_pred EecCCCCcHHH-HHHHHHh----cCeeeecCCCHHHHHHHHHHHhhcccCCc
Confidence 45666777876 3333333 33456789999999999998886665543
No 12
>PF14642 FAM47: FAM47 family
Probab=21.30 E-value=36 Score=34.05 Aligned_cols=36 Identities=36% Similarity=0.715 Sum_probs=24.9
Q ss_pred CCCChHHHHHHHHHhhhc---CCCCCCccceeeecccchhHHHHHHhhh
Q 016026 55 AGLPPELLRDVIKRLEAS---ESTWPARKHVVACAAVCRSWREMCKEIV 100 (396)
Q Consensus 55 a~lppell~dv~~r~e~s---e~~wp~r~~vvaca~vc~~wr~~~~eiv 100 (396)
..||||||.+||+=|+-. |++| +-|-.++..+++-.
T Consensus 139 E~mPpdLll~VLevLDPerkLed~w----------a~cE~~ek~t~ept 177 (258)
T PF14642_consen 139 EDMPPDLLLKVLEVLDPERKLEDTW----------AYCEGREKTTKEPT 177 (258)
T ss_pred ccCCHHHHHHHHhccCcccchhhhh----------hhhcccccccCCCc
Confidence 468999999999977533 4666 33555666666544
No 13
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=20.59 E-value=47 Score=33.59 Aligned_cols=44 Identities=36% Similarity=0.552 Sum_probs=31.2
Q ss_pred cCCcCCCCcccCcccccCCcccccccCccCCCChHHHHHHHHHhhhcCC
Q 016026 26 LPGHHGRGKSHGSVHELHDQPVVIQNSRWAGLPPELLRDVIKRLEASES 74 (396)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~wa~lppell~dv~~r~e~se~ 74 (396)
++|-+|-|||. +.+.++| ..=-|=.||||+||.+.+.-++.++.
T Consensus 6 iTGlSGaGKs~-Al~~lED----~Gy~cvDNlP~~Ll~~l~~~~~~~~~ 49 (284)
T PF03668_consen 6 ITGLSGAGKST-ALRALED----LGYYCVDNLPPSLLPQLIELLAQSNS 49 (284)
T ss_pred EeCCCcCCHHH-HHHHHHh----cCeeEEcCCcHHHHHHHHHHHHhcCC
Confidence 34556778887 4444443 33456789999999999999887654
Done!