Query 016026
Match_columns 396
No_of_seqs 235 out of 345
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 06:37:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016026.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016026hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fim_A Tubby related protein 1 100.0 1.3E-81 4.5E-86 608.4 19.2 220 113-396 27-276 (276)
2 3c5n_A Tubby-related protein 1 100.0 1.1E-78 3.8E-83 579.6 19.2 213 114-390 4-246 (246)
3 1fs1_A SKP2 F-BOX, cyclin A/CD 98.0 1.3E-06 4.5E-11 63.2 1.2 40 50-97 5-44 (53)
4 2ast_B S-phase kinase-associat 96.6 0.00058 2E-08 63.3 1.4 40 50-97 5-44 (336)
5 2e31_A FBS1, F-box only protei 96.3 0.00094 3.2E-08 65.2 1.1 39 51-97 48-87 (297)
6 2p1m_B Transport inhibitor res 95.6 0.0025 8.7E-08 63.4 0.6 42 50-98 2-43 (594)
7 2ovr_B FBW7, F-BOX/WD repeat p 94.2 0.011 3.8E-07 56.3 0.8 41 49-97 14-54 (445)
8 3v7d_B Cell division control p 94.0 0.0073 2.5E-07 57.4 -0.9 42 49-98 10-51 (464)
9 3l2o_B F-box only protein 4; s 92.3 0.019 6.4E-07 56.7 -0.9 39 52-98 3-41 (312)
10 1p22_A F-BOX/WD-repeat protein 91.1 0.027 9.1E-07 53.8 -1.3 41 49-97 6-50 (435)
11 3ogk_B Coronatine-insensitive 89.1 0.089 3.1E-06 52.4 0.6 37 54-97 13-49 (592)
No 1
>2fim_A Tubby related protein 1; tubby filled-barrel, beta-barrel, filled-beta-roll, 12-stran barrel, helix-filled-barrel, retinitis pigmentosa; HET: 3DP; 1.90A {Homo sapiens} PDB: 1s31_A*
Probab=100.00 E-value=1.3e-81 Score=608.38 Aligned_cols=220 Identities=44% Similarity=0.744 Sum_probs=163.4
Q ss_pred ccccCCCCCCceEEEEEEEecCCc------eEEEEeecCC------------------------CCcccCCCceeeeeee
Q 016026 113 VSLKQPGPRDGTIQCFIKRDKSNL------TYHLFLCLSP------------------------DNISRSSSTYIGKLRS 162 (396)
Q Consensus 113 isLkqPgPrd~~iQCfIkRdK~~~------tY~LYL~l~~------------------------~dlSR~S~~YVGKLRS 162 (396)
-.|+||||+|++|||+|+|||+|+ +|||||+.+. +||||++++|||||||
T Consensus 27 ~fl~~P~P~~~~iqC~I~R~k~g~~~g~yp~y~L~l~~~~~~fLLaarK~k~~~ts~YiIS~d~~dlsr~s~~yvGKLrS 106 (276)
T 2fim_A 27 EFVLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLDTEKKVFLLAGRKRKRSKTANYLISIDPTNLSRGGENFIGKLRS 106 (276)
T ss_dssp TGGGSCCCTTCCEEEEEEEEC-------CCEEEEEECSSSCEEEEEEEECTTCSSCEEEEESCTTC------CEEEEEEE
T ss_pred HHhcCCCCCCCeEEEEEEEeCCCCCCCCceEEEEEEeCCCCEEEEEEEeccCCCCceEEEEecchhcccCCceEEEEEEE
Confidence 458999999999999999999984 9999997432 7999999999999999
Q ss_pred cccccEEEEEcCCCCCCCCCCCCCCCCccccccccCCCCCCCceeeEEEEeeecccCCCCCceeEEeecCCCccccCCCC
Q 016026 163 NFLGTKFIIYDTQPPYNSAQLSPPGRSRRFYSKKVSPKVPTGSYNIAQVSYELNVLGTRGPRRMHCTMHSIPASALEPGG 242 (396)
Q Consensus 163 NFlGTkFtIYD~g~p~~~a~~~~~~rsrr~~sk~vsprvp~~~~ela~V~Ye~NVLG~rGPRrM~cim~~IP~s~l~~gg 242 (396)
||+||||||||+|.+++.+ .+|+++++++|||+|+||+||||++|||+|+|+|+ .++ ++|+
T Consensus 107 NflGtkF~iyD~G~~p~~~---------------~s~~~~~~r~el~~V~Ye~nvlg~~gPR~m~v~iP---~~~-~~~~ 167 (276)
T 2fim_A 107 NLLGNRFTVFDNGQNPQRG---------------YSTNVASLRQELAAVIYETNVLGFRGPRRMTVIIP---GMS-AENE 167 (276)
T ss_dssp CSSSSEEEEECSSBCGGGC---------------TTSCGGGBCCEEEEEEEC---------CCEEEEEE---CBC-TTSC
T ss_pred ccCCCEEEEECCCCCcccc---------------cCcccccccEEEEEEEEEecccCCCCCeEEEEEec---Ccc-cCCC
Confidence 9999999999999754321 35667788999999999999999999999999964 443 4566
Q ss_pred CCCCCCccCCCCccccccccCcccccccccccCccccccCCCCCcccCCCCceEeecCCCcccccccceEeecCCeeeec
Q 016026 243 SVPGQAELNPRSLEDSFRNFSKSIDVSTEFSSSRFSDIVGPRDEEDEGKDRPLILRNKAPRWHEQLQCWCLNFRGRVTVA 322 (396)
Q Consensus 243 ~~p~q~~~~~~~~~e~f~s~s~~~d~~~~~~s~~~s~~~~~~~~~~~~~~~~lvL~nK~P~W~e~lq~~~LnF~GRVt~a 322 (396)
.+|.++ ...++++. ..+. +...+++++|+||+|+|||++|||||||+||||+|
T Consensus 168 ~~~~~p----~~~~~~ll---------~~~~--------------~~~~~~~~~l~nK~P~wne~~~~y~LnF~GRVt~a 220 (276)
T 2fim_A 168 RVPIRP----RNASDGLL---------VRWQ--------------NKTLESLIELHNKPPVWNDDSGSYTLNFQGRVTQA 220 (276)
T ss_dssp BCCCCC----SSTTCSHH---------HHHH--------------HTCCTTEEEEEECCCEEETTTTEEECCCTTCCCSC
T ss_pred EecccC----CCcccccc---------hhhh--------------ccCCcceEeeeccCCcccccCCEEEEecCCeeecc
Confidence 665443 22222211 1111 12457899999999999999999999999999999
Q ss_pred cccceEEEeccCCCCCCCCCCCCCCCCCCCCCceEEEeeecCCCeeEEEccCCCCHHHHHHHHHHhCccccccC
Q 016026 323 SVKNFQLIAATQPAAGAPTPSQPPPPPPSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 396 (396)
Q Consensus 323 SVKNFQLv~~~~p~~~~~~~~q~~~~~~~~~~~viLQFGKv~kd~FtmD~ryPlS~~QAFAIcLssfdtKlACE 396 (396)
||||||||+. +++++||||||||++|+|||||+|||||||||||||||||+|||||
T Consensus 221 SvKNFQLv~~------------------~d~~~ivlQFGKv~~d~FtmD~~yPlS~~QAFaI~LsSfd~Klace 276 (276)
T 2fim_A 221 SVKNFQIVHA------------------DDPDYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFDGKLACE 276 (276)
T ss_dssp CTTCEEEECT------------------TCTTSCSEEEEEEETTEEEEEECTTCCHHHHHHHHHHTCC------
T ss_pred ccceEEEEec------------------CCCCEEEEEEeecCCCeEEEEecCCCCHHHHHHHHHHhcccccccC
Confidence 9999999983 4678999999999999999999999999999999999999999998
No 2
>3c5n_A Tubby-related protein 1; inositol, signalling, alternative splicing, disease mutation, polymorphism, retinitis pigmentosa, sensory transduction; HET: I3P; 1.80A {Homo sapiens} PDB: 1i7e_A* 1c8z_A
Probab=100.00 E-value=1.1e-78 Score=579.58 Aligned_cols=213 Identities=43% Similarity=0.735 Sum_probs=168.9
Q ss_pred cccCCCCCCceEEEEEEEecCCc------eEEEEeecCC------------------------CCcccCCCceeeeeeec
Q 016026 114 SLKQPGPRDGTIQCFIKRDKSNL------TYHLFLCLSP------------------------DNISRSSSTYIGKLRSN 163 (396)
Q Consensus 114 sLkqPgPrd~~iQCfIkRdK~~~------tY~LYL~l~~------------------------~dlSR~S~~YVGKLRSN 163 (396)
.|+||||+|++|||+|+|||+|+ +|||||+.+. +||||++++||||||||
T Consensus 4 fl~~P~P~~~~~qC~I~R~k~g~~~~~yp~y~l~~~~~~~~fLlaark~~~~~~s~YiIS~d~~dlsr~s~~yvGKLrsN 83 (246)
T 3c5n_A 4 FVLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLDTEKKVFLLAGRKRKRSKTANYLISIDPTNLSRGGENFIGKLRSN 83 (246)
T ss_dssp GGGSCCCTTCEEEEEEEECC------CCCEEEEEESSSSCCEEEEEEECTTCSSCEEEEESCTTC------CEEEEEEEC
T ss_pred HcCCCCCCCceEEEEEEEeCCCCCCCCceEEEEEEeCCCcEEEEeeeeccCCCCceEEEEeCccccccCCceEEEEEEEc
Confidence 58999999999999999999984 9999997432 79999999999999999
Q ss_pred ccccEEEEEcCCCCCCCCCCCCCCCCccccccccCCCCCCCceeeEEEEeeecccCCCCCceeEEeecCCCccccCCCCC
Q 016026 164 FLGTKFIIYDTQPPYNSAQLSPPGRSRRFYSKKVSPKVPTGSYNIAQVSYELNVLGTRGPRRMHCTMHSIPASALEPGGS 243 (396)
Q Consensus 164 FlGTkFtIYD~g~p~~~a~~~~~~rsrr~~sk~vsprvp~~~~ela~V~Ye~NVLG~rGPRrM~cim~~IP~s~l~~gg~ 243 (396)
|+||+|||||+|++++.+ .+|+++++++|||+|+||+||||++|||+|+|+|+ .++ ++|+.
T Consensus 84 f~Gt~F~iyD~g~~p~~~---------------~s~~~~~~r~el~~v~Ye~n~l~~~gPR~m~v~iP---~~~-~~~~~ 144 (246)
T 3c5n_A 84 LLGNRFTVFDNGQNPQRG---------------YSTNVASLRQELAAVIYETNVLGFRGPRRMTVIIP---GMS-AENER 144 (246)
T ss_dssp SSSSEEEEECSCBCGGGC---------------TTSCGGGBCCEEEEEEECCCCCC---CCCEEEEEE---CBC-TTSCB
T ss_pred cCCCEEEEECCCCCcccc---------------cCcccccccEEEEEEEEEecccCCCCCeEEEEEec---Ccc-cCCCE
Confidence 999999999999754321 34667788999999999999999999999999964 443 45666
Q ss_pred CCCCCccCCCCccccccccCcccccccccccCccccccCCCCCcccCCCCceEeecCCCcccccccceEeecCCeeeecc
Q 016026 244 VPGQAELNPRSLEDSFRNFSKSIDVSTEFSSSRFSDIVGPRDEEDEGKDRPLILRNKAPRWHEQLQCWCLNFRGRVTVAS 323 (396)
Q Consensus 244 ~p~q~~~~~~~~~e~f~s~s~~~d~~~~~~s~~~s~~~~~~~~~~~~~~~~lvL~nK~P~W~e~lq~~~LnF~GRVt~aS 323 (396)
+|.++ +..++++. ..+. +...+++++|+||+|+|||++|||||||+||||+||
T Consensus 145 ~~~~p----~~~~~~~~---------~~~~--------------~~~~~~~~~l~nK~P~w~e~~~~y~LnF~GRvt~aS 197 (246)
T 3c5n_A 145 VPIRP----RNASDGLL---------VRWQ--------------NKTLESLIELHNKPPVWNDDSGSYTLNFQGRVTQAS 197 (246)
T ss_dssp CCCCC----SSTTSSHH---------HHHH--------------HTCCTTEEEEEECCCEEETTTTEEECCCTTSCCBCC
T ss_pred eeccC----CCccccch---------hhhh--------------ccCCcceEEEeccCCcccccCCEEEEecCCeeeccc
Confidence 65543 22222211 1111 124578999999999999999999999999999999
Q ss_pred ccceEEEeccCCCCCCCCCCCCCCCCCCCCCceEEEeeecCCCeeEEEccCCCCHHHHHHHHHHhCc
Q 016026 324 VKNFQLIAATQPAAGAPTPSQPPPPPPSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFD 390 (396)
Q Consensus 324 VKNFQLv~~~~p~~~~~~~~q~~~~~~~~~~~viLQFGKv~kd~FtmD~ryPlS~~QAFAIcLssfd 390 (396)
|||||||++ +++++||||||||++|+|||||+|||||||||||||||||
T Consensus 198 vKNFqLv~~------------------~~~~~ivlqFGKv~~d~FtmD~~yPlS~~QAFaI~LsSfD 246 (246)
T 3c5n_A 198 VKNFQIVHA------------------DDPDYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFD 246 (246)
T ss_dssp TTCEEEEBT------------------TBTTSCSEEEEEEETTEEEEEEETTCCHHHHHHHHHHTCC
T ss_pred cceEEEEec------------------CCCCEEEEEEEEecCCeEEEEecCCCCHHHHHHHHHHcCC
Confidence 999999983 4678999999999999999999999999999999999998
No 3
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.00 E-value=1.3e-06 Score=63.22 Aligned_cols=40 Identities=25% Similarity=0.606 Sum_probs=32.8
Q ss_pred ccCccCCCChHHHHHHHHHhhhcCCCCCCccceeeecccchhHHHHHH
Q 016026 50 QNSRWAGLPPELLRDVIKRLEASESTWPARKHVVACAAVCRSWREMCK 97 (396)
Q Consensus 50 ~~~~wa~lppell~dv~~r~e~se~~wp~r~~vvaca~vc~~wr~~~~ 97 (396)
++..|+.||+|+|..|+.++. .++++.|+.|||+|+.++.
T Consensus 5 ~~~~~~~LP~eil~~I~~~L~--------~~dl~~~~~Vck~w~~~~~ 44 (53)
T 1fs1_A 5 PGVSWDSLPDELLLGIFSCLC--------LPELLKVSGVCKRWYRLAS 44 (53)
T ss_dssp ----CCSSCHHHHHHHHTTSC--------GGGHHHHHTTCHHHHHHHT
T ss_pred CCCCHHHCCHHHHHHHHHcCC--------HHHHHHHHHHHHHHHHHhC
Confidence 356799999999999999994 3688999999999999875
No 4
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=96.56 E-value=0.00058 Score=63.32 Aligned_cols=40 Identities=25% Similarity=0.615 Sum_probs=34.0
Q ss_pred ccCccCCCChHHHHHHHHHhhhcCCCCCCccceeeecccchhHHHHHH
Q 016026 50 QNSRWAGLPPELLRDVIKRLEASESTWPARKHVVACAAVCRSWREMCK 97 (396)
Q Consensus 50 ~~~~wa~lppell~dv~~r~e~se~~wp~r~~vvaca~vc~~wr~~~~ 97 (396)
++..|+.||+|+|..|+..+.. ++++.|+.||++|++++.
T Consensus 5 ~~~~~~~LP~eil~~If~~L~~--------~d~~~~~~vc~~W~~~~~ 44 (336)
T 2ast_B 5 PGVSWDSLPDELLLGIFSCLCL--------PELLKVSGVCKRWYRLAS 44 (336)
T ss_dssp --CCSSSSCHHHHHHHHTTSCH--------HHHHHTTSSCHHHHHHHT
T ss_pred ccCChhhCCHHHHHHHHHhCCH--------HHHHHHHHHHHHHHHHhc
Confidence 4678999999999999999954 367899999999999874
No 5
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=96.30 E-value=0.00094 Score=65.24 Aligned_cols=39 Identities=38% Similarity=0.679 Sum_probs=34.3
Q ss_pred cCccCCCChHHHHHHHHHhhhcCCCCCCcccee-eecccchhHHHHHH
Q 016026 51 NSRWAGLPPELLRDVIKRLEASESTWPARKHVV-ACAAVCRSWREMCK 97 (396)
Q Consensus 51 ~~~wa~lppell~dv~~r~e~se~~wp~r~~vv-aca~vc~~wr~~~~ 97 (396)
....+.||+|||.+|+.||.. ++++ .|+.|||+||.++.
T Consensus 48 ~~~~~~LP~ell~~Il~~Lp~--------~~L~~r~~~VCk~Wr~l~~ 87 (297)
T 2e31_A 48 VEYLAELPEPLLLRVLAELPA--------TELVQACRLVCLRWKELVD 87 (297)
T ss_dssp CCCTTSSCHHHHHHHHHTSCH--------HHHHHTGGGTCHHHHHHHT
T ss_pred ccChhhCCHHHHHHHHHcCCH--------HHHHHHHHHHhHHHHHHhc
Confidence 346789999999999999977 5688 99999999999874
No 6
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=95.58 E-value=0.0025 Score=63.44 Aligned_cols=42 Identities=26% Similarity=0.431 Sum_probs=29.3
Q ss_pred ccCccCCCChHHHHHHHHHhhhcCCCCCCccceeeecccchhHHHHHHh
Q 016026 50 QNSRWAGLPPELLRDVIKRLEASESTWPARKHVVACAAVCRSWREMCKE 98 (396)
Q Consensus 50 ~~~~wa~lppell~dv~~r~e~se~~wp~r~~vvaca~vc~~wr~~~~e 98 (396)
+...|+.||+|+|..|+.++. ..+++++|+-||++|+.+...
T Consensus 2 ~~d~~~~LPdevL~~If~~L~-------~~~d~~~~s~vck~W~~~~~~ 43 (594)
T 2p1m_B 2 QKRIALSFPEEVLEHVFSFIQ-------LDKDRNSVSLVCKSWYEIERW 43 (594)
T ss_dssp --------CHHHHHHHHHTCC-------CHHHHHHHHTSCHHHHHHHHH
T ss_pred cccchhhCCHHHHHHHHhhcC-------CchhHHHHHHHHHHHHHhhhh
Confidence 457899999999999999985 346789999999999998433
No 7
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=94.17 E-value=0.011 Score=56.28 Aligned_cols=41 Identities=34% Similarity=0.523 Sum_probs=35.2
Q ss_pred cccCccCCCChHHHHHHHHHhhhcCCCCCCccceeeecccchhHHHHHH
Q 016026 49 IQNSRWAGLPPELLRDVIKRLEASESTWPARKHVVACAAVCRSWREMCK 97 (396)
Q Consensus 49 ~~~~~wa~lppell~dv~~r~e~se~~wp~r~~vvaca~vc~~wr~~~~ 97 (396)
....-++.||+|||..|+..|+. ++++.||.||+.|++++.
T Consensus 14 ~~~d~~~~lp~e~~~~i~~~l~~--------~~l~~~~~v~~~~~~~~~ 54 (445)
T 2ovr_B 14 FQRDFISLLPKELALYVLSFLEP--------KDLLQAAQTCRYWRILAE 54 (445)
T ss_dssp CCCSTTTSSCHHHHHHHHTTSCH--------HHHHHHTTSCHHHHHHHT
T ss_pred ccCChhHHCCHHHHHHHHHhCCH--------HHHHHHHHHhHHHHhhcC
Confidence 34567999999999999999965 468999999999998874
No 8
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=93.98 E-value=0.0073 Score=57.42 Aligned_cols=42 Identities=14% Similarity=0.420 Sum_probs=36.0
Q ss_pred cccCccCCCChHHHHHHHHHhhhcCCCCCCccceeeecccchhHHHHHHh
Q 016026 49 IQNSRWAGLPPELLRDVIKRLEASESTWPARKHVVACAAVCRSWREMCKE 98 (396)
Q Consensus 49 ~~~~~wa~lppell~dv~~r~e~se~~wp~r~~vvaca~vc~~wr~~~~e 98 (396)
.+..-++.||+|||..|+..|+. ++++.|+.||+.|+.++.+
T Consensus 10 ~~~d~~~~lp~~~~~~i~~~l~~--------~~l~~~~~v~~~w~~~~~~ 51 (464)
T 3v7d_B 10 LKRDLITSLPFEISLKIFNYLQF--------EDIINSLGVSQNWNKIIRK 51 (464)
T ss_dssp CCCCHHHHSCHHHHHHHHTTSCH--------HHHHHHHTTCHHHHHHHTT
T ss_pred cccCChHHCCHHHHHHHHhcCCH--------HHHHHHHHHHHHHHHHHcC
Confidence 45567889999999999999955 5789999999999998754
No 9
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=92.27 E-value=0.019 Score=56.65 Aligned_cols=39 Identities=15% Similarity=0.323 Sum_probs=34.6
Q ss_pred CccCCCChHHHHHHHHHhhhcCCCCCCccceeeecccchhHHHHHHh
Q 016026 52 SRWAGLPPELLRDVIKRLEASESTWPARKHVVACAAVCRSWREMCKE 98 (396)
Q Consensus 52 ~~wa~lppell~dv~~r~e~se~~wp~r~~vvaca~vc~~wr~~~~e 98 (396)
+-|..||.|++..|+.-|+. +++..||.|||.||.++.+
T Consensus 3 ~~l~~LP~ei~l~IlsfL~p--------~DL~~l~~vcr~Wr~la~D 41 (312)
T 3l2o_B 3 STLTRLPIDVQLYILSFLSP--------HDLCQLGSTNHYWNETVRD 41 (312)
T ss_dssp CHHHHSCHHHHHHHHHTSCH--------HHHHHHHTTCHHHHHHHTC
T ss_pred chhHhCCHHHHHHHHhcCCH--------HHHHHHHHHHHHHHHHhcc
Confidence 34789999999999999987 5789999999999999854
No 10
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=91.05 E-value=0.027 Score=53.77 Aligned_cols=41 Identities=24% Similarity=0.574 Sum_probs=34.6
Q ss_pred cccCccCCCChH----HHHHHHHHhhhcCCCCCCccceeeecccchhHHHHHH
Q 016026 49 IQNSRWAGLPPE----LLRDVIKRLEASESTWPARKHVVACAAVCRSWREMCK 97 (396)
Q Consensus 49 ~~~~~wa~lppe----ll~dv~~r~e~se~~wp~r~~vvaca~vc~~wr~~~~ 97 (396)
.+..--+.||+| ||..|+..|+. +++..||.|||.|++++.
T Consensus 6 ~~~d~~~~lp~e~~~~~~~~i~~~l~~--------~~l~~~~~v~~~w~~~~~ 50 (435)
T 1p22_A 6 LQRDFITALPARGLDHIAENILSYLDA--------KSLCAAELVCKEWYRVTS 50 (435)
T ss_dssp SCCCHHHHTGGGTCHHHHHHHHTTCCH--------HHHHHHHHHCHHHHHHHH
T ss_pred hhcChHHHCCcchHHHHHHHHHhcCCH--------HHHHHHHHHHHHHHHHhc
Confidence 445667889999 99999999886 468899999999998874
No 11
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=89.07 E-value=0.089 Score=52.37 Aligned_cols=37 Identities=16% Similarity=0.373 Sum_probs=31.5
Q ss_pred cCCCChHHHHHHHHHhhhcCCCCCCccceeeecccchhHHHHHH
Q 016026 54 WAGLPPELLRDVIKRLEASESTWPARKHVVACAAVCRSWREMCK 97 (396)
Q Consensus 54 wa~lppell~dv~~r~e~se~~wp~r~~vvaca~vc~~wr~~~~ 97 (396)
.+.||+|+|..|+..++ +.++.++|+-||++|+.+..
T Consensus 13 ~~~LPdeil~~I~~~L~-------~~~d~~~~s~vck~W~~~~~ 49 (592)
T 3ogk_B 13 CVATVDDVIEQVMTYIT-------DPKDRDSASLVCRRWFKIDS 49 (592)
T ss_dssp CCCCGGGTHHHHHTTCC-------CHHHHHHHTTSCHHHHHHHH
T ss_pred cCCCCHHHHHHHHHhcC-------CHHHHHHHHHHhHHHHHhhh
Confidence 35899999999999994 24678999999999999853
Done!