Query 016027
Match_columns 396
No_of_seqs 662 out of 1740
Neff 12.1
Searched_HMMs 46136
Date Fri Mar 29 03:07:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016027.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016027hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 3.3E-59 7.2E-64 434.4 48.5 372 5-389 416-789 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 3.9E-58 8.5E-63 427.2 48.8 379 1-388 443-846 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 2E-53 4.3E-58 393.0 39.4 360 2-382 94-454 (697)
4 PLN03081 pentatricopeptide (PP 100.0 1.3E-52 2.9E-57 387.5 39.8 364 1-385 164-559 (697)
5 PLN03077 Protein ECB2; Provisi 100.0 3E-52 6.4E-57 394.0 39.0 364 2-383 260-654 (857)
6 PLN03077 Protein ECB2; Provisi 100.0 1E-50 2.2E-55 383.6 37.8 362 1-384 127-519 (857)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 4.6E-28 9.9E-33 234.3 46.1 359 3-380 507-897 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1.4E-27 3E-32 231.0 46.3 361 3-383 439-799 (899)
9 KOG4626 O-linked N-acetylgluco 100.0 9.1E-27 2E-31 195.4 27.4 362 2-383 123-485 (966)
10 TIGR00990 3a0801s09 mitochondr 100.0 4.7E-24 1E-28 195.2 45.8 369 3-386 135-574 (615)
11 PRK15174 Vi polysaccharide exp 100.0 5.4E-24 1.2E-28 194.2 42.7 329 2-348 49-381 (656)
12 PRK11788 tetratricopeptide rep 100.0 1.5E-24 3.2E-29 189.1 36.0 296 78-382 41-346 (389)
13 PRK11788 tetratricopeptide rep 100.0 1.4E-24 3E-29 189.2 34.9 309 35-355 37-354 (389)
14 PRK15174 Vi polysaccharide exp 100.0 1.5E-23 3.2E-28 191.3 42.2 361 5-383 15-381 (656)
15 PRK11447 cellulose synthase su 99.9 1.1E-22 2.3E-27 198.1 44.1 358 4-383 278-700 (1157)
16 PRK11447 cellulose synthase su 99.9 6.2E-22 1.3E-26 192.8 44.2 361 2-381 310-738 (1157)
17 PRK10049 pgaA outer membrane p 99.9 1.6E-21 3.6E-26 181.7 44.5 372 3-391 23-464 (765)
18 KOG4626 O-linked N-acetylgluco 99.9 4.2E-23 9.1E-28 173.6 28.8 337 33-385 116-453 (966)
19 TIGR00990 3a0801s09 mitochondr 99.9 4E-21 8.8E-26 176.0 43.5 339 35-386 129-540 (615)
20 PRK10049 pgaA outer membrane p 99.9 4.6E-19 1E-23 165.5 42.0 345 2-364 56-470 (765)
21 PRK14574 hmsH outer membrane p 99.9 1.6E-18 3.4E-23 159.2 43.7 364 4-383 43-479 (822)
22 PRK14574 hmsH outer membrane p 99.9 1.4E-18 3E-23 159.5 42.9 371 2-388 75-518 (822)
23 KOG2002 TPR-containing nuclear 99.9 3.6E-19 7.8E-24 157.4 34.1 373 2-388 314-750 (1018)
24 KOG2076 RNA polymerase III tra 99.9 5.6E-18 1.2E-22 148.9 38.1 366 3-382 147-554 (895)
25 PRK09782 bacteriophage N4 rece 99.9 1.4E-16 3.1E-21 149.4 43.3 361 2-386 320-709 (987)
26 PRK09782 bacteriophage N4 rece 99.9 2E-16 4.4E-21 148.4 43.6 358 8-383 355-740 (987)
27 KOG2002 TPR-containing nuclear 99.8 8.7E-17 1.9E-21 142.6 31.8 369 2-383 277-709 (1018)
28 KOG2076 RNA polymerase III tra 99.8 9.7E-16 2.1E-20 135.1 36.3 337 34-381 140-510 (895)
29 KOG2003 TPR repeat-containing 99.8 2.6E-17 5.5E-22 134.4 24.3 367 3-383 245-689 (840)
30 PRK10747 putative protoheme IX 99.8 5.3E-16 1.1E-20 134.1 33.9 286 43-347 94-389 (398)
31 TIGR00540 hemY_coli hemY prote 99.8 9.4E-16 2E-20 133.3 34.8 291 82-380 94-396 (409)
32 KOG4422 Uncharacterized conser 99.8 3.3E-15 7.1E-20 121.2 34.8 369 5-382 125-589 (625)
33 TIGR00540 hemY_coli hemY prote 99.8 8.1E-16 1.8E-20 133.7 34.1 296 40-347 91-398 (409)
34 PRK10747 putative protoheme IX 99.8 1.4E-15 3.1E-20 131.4 35.2 284 84-382 96-389 (398)
35 PF13429 TPR_15: Tetratricopep 99.8 4.5E-19 9.7E-24 146.6 13.0 263 38-312 13-276 (280)
36 KOG2003 TPR repeat-containing 99.8 8E-16 1.7E-20 125.8 30.7 363 4-380 285-719 (840)
37 PF13429 TPR_15: Tetratricopep 99.8 1.5E-18 3.3E-23 143.5 13.1 263 77-347 13-276 (280)
38 KOG1126 DNA-binding cell divis 99.8 2.8E-16 6E-21 134.2 26.7 288 48-349 334-621 (638)
39 COG2956 Predicted N-acetylgluc 99.8 4.3E-15 9.4E-20 116.2 30.1 291 45-347 47-346 (389)
40 KOG0547 Translocase of outer m 99.8 1.1E-14 2.3E-19 120.2 33.3 366 3-383 123-566 (606)
41 COG2956 Predicted N-acetylgluc 99.8 1.5E-14 3.3E-19 113.2 30.2 290 84-382 47-346 (389)
42 KOG1126 DNA-binding cell divis 99.8 9.1E-16 2E-20 131.1 25.2 288 86-387 333-624 (638)
43 KOG0495 HAT repeat protein [RN 99.8 1.4E-13 3E-18 117.7 37.1 363 7-385 491-882 (913)
44 COG3071 HemY Uncharacterized e 99.7 7.4E-14 1.6E-18 112.6 32.5 287 45-347 96-389 (400)
45 KOG1915 Cell cycle control pro 99.7 3.6E-13 7.9E-18 111.0 36.4 368 7-393 119-546 (677)
46 KOG1155 Anaphase-promoting com 99.7 5.3E-14 1.1E-18 115.4 30.7 352 5-383 174-536 (559)
47 COG3071 HemY Uncharacterized e 99.7 8.2E-13 1.8E-17 106.7 37.0 299 77-387 87-394 (400)
48 KOG1155 Anaphase-promoting com 99.7 3.4E-13 7.3E-18 110.8 34.7 329 33-382 164-494 (559)
49 KOG4422 Uncharacterized conser 99.7 3.5E-13 7.6E-18 109.7 34.2 308 33-350 207-592 (625)
50 KOG1915 Cell cycle control pro 99.7 7.7E-13 1.7E-17 109.1 36.1 357 8-384 86-501 (677)
51 KOG0495 HAT repeat protein [RN 99.7 1.6E-12 3.4E-17 111.4 38.1 345 34-386 441-786 (913)
52 PRK12370 invasion protein regu 99.7 2.5E-14 5.4E-19 129.2 27.8 251 47-313 275-535 (553)
53 KOG0547 Translocase of outer m 99.7 4.6E-13 9.9E-18 110.8 31.0 342 35-389 117-538 (606)
54 PRK12370 invasion protein regu 99.7 8.4E-14 1.8E-18 125.7 28.0 269 69-349 253-536 (553)
55 KOG1129 TPR repeat-containing 99.7 5.2E-14 1.1E-18 110.5 20.1 262 119-386 189-461 (478)
56 TIGR02521 type_IV_pilW type IV 99.7 3.7E-13 8E-18 108.8 26.1 199 33-241 31-230 (234)
57 KOG1173 Anaphase-promoting com 99.6 2.4E-12 5.2E-17 108.5 30.5 273 108-386 243-521 (611)
58 PF12569 NARP1: NMDA receptor- 99.6 9.3E-12 2E-16 108.9 34.3 299 34-347 5-333 (517)
59 COG3063 PilF Tfp pilus assembl 99.6 5.3E-13 1.1E-17 99.9 21.8 198 35-242 37-235 (250)
60 PRK11189 lipoprotein NlpI; Pro 99.6 9.6E-13 2.1E-17 109.1 26.1 221 8-244 39-266 (296)
61 TIGR02521 type_IV_pilW type IV 99.6 1.4E-12 3E-17 105.4 26.0 203 69-277 28-231 (234)
62 KOG1129 TPR repeat-containing 99.6 1.9E-13 4E-18 107.4 18.8 231 76-314 227-459 (478)
63 PF12569 NARP1: NMDA receptor- 99.6 9.6E-12 2.1E-16 108.9 31.3 300 73-383 5-334 (517)
64 KOG1156 N-terminal acetyltrans 99.6 6.4E-11 1.4E-15 101.6 34.8 364 7-395 19-446 (700)
65 COG3063 PilF Tfp pilus assembl 99.6 9.9E-12 2.2E-16 93.2 24.2 207 73-287 36-243 (250)
66 KOG1173 Anaphase-promoting com 99.6 2.3E-11 5E-16 102.7 28.6 286 69-364 241-532 (611)
67 KOG4162 Predicted calmodulin-b 99.6 2.5E-10 5.4E-15 100.0 35.7 376 4-390 332-790 (799)
68 KOG1174 Anaphase-promoting com 99.6 2.1E-10 4.6E-15 93.4 32.4 310 68-386 190-503 (564)
69 KOG3785 Uncharacterized conser 99.5 8.2E-11 1.8E-15 93.9 28.5 366 5-390 32-497 (557)
70 KOG1174 Anaphase-promoting com 99.5 1.9E-10 4.2E-15 93.6 30.6 293 43-349 206-501 (564)
71 KOG0548 Molecular co-chaperone 99.5 1.4E-10 3.1E-15 97.5 30.7 329 4-349 11-456 (539)
72 KOG3785 Uncharacterized conser 99.5 3.7E-10 8E-15 90.3 31.0 332 40-390 29-464 (557)
73 KOG2376 Signal recognition par 99.5 1.3E-09 2.8E-14 92.9 34.8 366 2-388 19-493 (652)
74 cd05804 StaR_like StaR_like; a 99.5 6.7E-10 1.4E-14 95.8 34.7 202 33-243 6-215 (355)
75 KOG1840 Kinesin light chain [C 99.5 2.6E-11 5.7E-16 104.9 25.0 174 33-206 199-394 (508)
76 KOG1840 Kinesin light chain [C 99.5 1.3E-10 2.8E-15 100.7 28.9 240 143-382 198-478 (508)
77 PRK11189 lipoprotein NlpI; Pro 99.5 8.8E-11 1.9E-15 97.5 26.6 221 47-279 40-266 (296)
78 KOG0624 dsRNA-activated protei 99.5 1.7E-09 3.6E-14 86.2 31.1 298 4-315 47-372 (504)
79 cd05804 StaR_like StaR_like; a 99.5 1.3E-09 2.8E-14 94.0 33.6 310 69-383 3-336 (355)
80 KOG2047 mRNA splicing factor [ 99.5 6.6E-09 1.4E-13 89.6 36.0 365 4-383 111-615 (835)
81 KOG1156 N-terminal acetyltrans 99.4 1.3E-08 2.7E-13 88.0 34.9 359 6-385 52-470 (700)
82 KOG1125 TPR repeat-containing 99.4 6.2E-11 1.3E-15 100.5 19.3 253 39-303 291-561 (579)
83 PF13041 PPR_2: PPR repeat fam 99.4 1.5E-12 3.3E-17 75.9 6.5 50 107-156 1-50 (50)
84 KOG0624 dsRNA-activated protei 99.4 1.3E-08 2.9E-13 81.2 30.1 320 33-387 38-374 (504)
85 KOG0548 Molecular co-chaperone 99.4 4.9E-09 1.1E-13 88.5 28.5 335 38-386 7-458 (539)
86 KOG1125 TPR repeat-containing 99.4 7.3E-10 1.6E-14 94.2 23.0 258 77-342 290-565 (579)
87 KOG4340 Uncharacterized conser 99.4 1.7E-09 3.7E-14 84.5 22.9 85 122-210 125-209 (459)
88 KOG4162 Predicted calmodulin-b 99.3 3.8E-08 8.3E-13 86.8 33.3 337 4-348 366-783 (799)
89 KOG4318 Bicoid mRNA stability 99.3 2.6E-10 5.5E-15 101.4 20.3 246 67-334 20-286 (1088)
90 PF13041 PPR_2: PPR repeat fam 99.3 4E-12 8.6E-17 74.2 6.2 50 317-366 1-50 (50)
91 KOG4340 Uncharacterized conser 99.3 6.6E-09 1.4E-13 81.3 23.9 356 5-381 20-441 (459)
92 PRK04841 transcriptional regul 99.3 7.4E-08 1.6E-12 93.8 35.6 372 4-384 350-761 (903)
93 PLN02789 farnesyltranstransfer 99.3 1.8E-08 3.9E-13 83.7 26.7 215 35-261 39-267 (320)
94 PF04733 Coatomer_E: Coatomer 99.3 1.9E-10 4.1E-15 94.0 14.5 250 80-347 9-264 (290)
95 PF04733 Coatomer_E: Coatomer 99.3 9.7E-10 2.1E-14 89.9 18.5 252 40-313 8-265 (290)
96 KOG2047 mRNA splicing factor [ 99.3 4.5E-07 9.7E-12 78.7 34.7 336 34-382 103-578 (835)
97 KOG2376 Signal recognition par 99.3 2.5E-07 5.4E-12 79.4 32.7 127 34-174 13-140 (652)
98 PLN02789 farnesyltranstransfer 99.2 1.4E-08 3E-13 84.3 24.5 208 4-226 46-267 (320)
99 KOG4318 Bicoid mRNA stability 99.2 7.7E-09 1.7E-13 92.4 23.9 250 20-299 15-286 (1088)
100 TIGR03302 OM_YfiO outer membra 99.2 4.8E-09 1E-13 84.7 21.3 188 32-243 32-232 (235)
101 TIGR03302 OM_YfiO outer membra 99.2 1.9E-08 4E-13 81.2 20.7 190 69-278 30-232 (235)
102 PRK04841 transcriptional regul 99.2 2.5E-07 5.5E-12 90.1 32.1 342 5-349 384-761 (903)
103 KOG1070 rRNA processing protei 99.1 9.7E-08 2.1E-12 89.5 26.7 207 32-246 1457-1666(1710)
104 PRK14720 transcript cleavage f 99.1 1.8E-07 3.9E-12 86.6 28.2 239 32-330 30-268 (906)
105 PRK10370 formate-dependent nit 99.1 4.7E-09 1E-13 81.2 15.3 155 3-182 24-181 (198)
106 PRK15359 type III secretion sy 99.1 5.1E-09 1.1E-13 76.6 14.5 121 15-151 13-133 (144)
107 COG5010 TadD Flp pilus assembl 99.1 4.1E-08 8.8E-13 75.8 19.1 167 69-242 64-230 (257)
108 KOG1128 Uncharacterized conser 99.1 1.8E-07 3.8E-12 82.3 24.9 241 67-330 393-634 (777)
109 PRK10370 formate-dependent nit 99.1 3E-08 6.4E-13 76.8 18.3 153 38-211 21-176 (198)
110 KOG1127 TPR repeat-containing 99.1 2E-07 4.3E-12 84.7 25.2 360 10-388 473-884 (1238)
111 KOG1070 rRNA processing protei 99.1 3.3E-07 7.2E-12 86.1 27.0 239 132-375 1447-1692(1710)
112 KOG1914 mRNA cleavage and poly 99.1 5.7E-06 1.2E-10 70.7 34.6 151 230-382 347-500 (656)
113 COG5010 TadD Flp pilus assembl 99.1 1.1E-07 2.4E-12 73.4 19.6 165 108-277 66-230 (257)
114 KOG3617 WD40 and TPR repeat-co 99.0 1.1E-06 2.5E-11 78.5 27.5 181 4-207 737-940 (1416)
115 KOG1128 Uncharacterized conser 99.0 2.2E-07 4.8E-12 81.7 22.8 218 146-384 400-617 (777)
116 PRK14720 transcript cleavage f 99.0 9.4E-07 2E-11 82.0 27.1 241 69-365 28-268 (906)
117 PRK15179 Vi polysaccharide bio 99.0 2.2E-07 4.9E-12 85.1 22.7 137 67-208 81-217 (694)
118 KOG3616 Selective LIM binding 99.0 6.2E-07 1.3E-11 79.3 23.8 109 151-272 739-847 (1636)
119 PRK15179 Vi polysaccharide bio 99.0 1.9E-07 4.2E-12 85.5 20.6 143 33-185 86-228 (694)
120 KOG3081 Vesicle coat complex C 98.9 3.2E-06 6.9E-11 65.6 23.6 251 40-313 15-271 (299)
121 KOG1127 TPR repeat-containing 98.9 4.2E-06 9.2E-11 76.5 27.1 362 5-380 572-993 (1238)
122 PRK15359 type III secretion sy 98.9 1.8E-07 4E-12 68.5 15.7 95 75-173 27-121 (144)
123 KOG3081 Vesicle coat complex C 98.9 3.4E-06 7.4E-11 65.4 22.2 249 80-347 16-270 (299)
124 KOG0985 Vesicle coat protein c 98.9 1.6E-05 3.4E-10 73.1 29.6 235 72-345 1104-1338(1666)
125 KOG0985 Vesicle coat protein c 98.9 2E-05 4.3E-10 72.5 30.0 303 33-381 984-1306(1666)
126 COG4783 Putative Zn-dependent 98.9 6.6E-07 1.4E-11 75.3 19.2 125 75-205 309-434 (484)
127 KOG3060 Uncharacterized conser 98.9 3.9E-06 8.4E-11 64.6 21.6 188 9-208 26-220 (289)
128 TIGR02552 LcrH_SycD type III s 98.9 2.3E-07 5E-12 67.7 14.6 110 17-138 5-114 (135)
129 KOG3060 Uncharacterized conser 98.8 7.9E-06 1.7E-10 63.0 22.4 188 123-314 26-221 (289)
130 PF12854 PPR_1: PPR repeat 98.8 6.8E-09 1.5E-13 54.2 4.0 32 349-380 2-33 (34)
131 TIGR02552 LcrH_SycD type III s 98.8 4.1E-07 8.9E-12 66.3 14.6 101 69-173 14-114 (135)
132 KOG3617 WD40 and TPR repeat-co 98.8 2E-05 4.4E-10 70.9 26.9 117 38-172 805-940 (1416)
133 COG4783 Putative Zn-dependent 98.8 1.5E-06 3.3E-11 73.2 17.6 149 33-208 306-454 (484)
134 KOG2053 Mitochondrial inherita 98.7 0.00019 4.1E-09 65.4 31.7 229 40-279 16-256 (932)
135 TIGR02795 tol_pal_ybgF tol-pal 98.7 8.4E-07 1.8E-11 63.1 13.6 104 34-139 3-106 (119)
136 PF12854 PPR_1: PPR repeat 98.7 2.7E-08 5.9E-13 51.9 3.8 30 140-169 3-32 (34)
137 PF09976 TPR_21: Tetratricopep 98.7 1.4E-06 3.1E-11 64.1 14.3 118 85-204 24-143 (145)
138 KOG3616 Selective LIM binding 98.7 1.3E-05 2.8E-10 71.3 21.6 261 3-309 565-849 (1636)
139 PF09295 ChAPs: ChAPs (Chs5p-A 98.6 1E-06 2.3E-11 74.8 13.5 133 27-171 163-295 (395)
140 PF09295 ChAPs: ChAPs (Chs5p-A 98.6 4.5E-06 9.7E-11 71.0 17.1 128 71-206 168-295 (395)
141 PRK15363 pathogenicity island 98.6 4.3E-06 9.2E-11 60.4 13.8 98 33-138 35-132 (157)
142 KOG1914 mRNA cleavage and poly 98.6 0.0003 6.6E-09 60.6 33.9 151 195-347 347-500 (656)
143 TIGR02795 tol_pal_ybgF tol-pal 98.6 5.1E-06 1.1E-10 59.0 13.8 101 73-173 3-105 (119)
144 KOG0550 Molecular chaperone (D 98.6 0.00011 2.4E-09 60.9 22.6 269 35-313 51-350 (486)
145 KOG2053 Mitochondrial inherita 98.5 0.00066 1.4E-08 62.1 37.8 109 6-127 20-128 (932)
146 PRK15363 pathogenicity island 98.5 1.1E-06 2.3E-11 63.4 9.6 90 4-102 44-133 (157)
147 PF12895 Apc3: Anaphase-promot 98.5 1.9E-07 4.1E-12 61.5 5.4 82 8-97 2-83 (84)
148 PF09976 TPR_21: Tetratricopep 98.5 8.8E-06 1.9E-10 59.9 14.7 131 35-170 14-144 (145)
149 PRK10866 outer membrane biogen 98.5 0.00017 3.6E-09 58.0 22.9 72 33-106 32-103 (243)
150 PLN03088 SGT1, suppressor of 98.5 2.8E-06 6.1E-11 72.5 13.2 91 4-103 11-101 (356)
151 cd00189 TPR Tetratricopeptide 98.5 3E-06 6.5E-11 57.4 11.0 96 35-138 2-97 (100)
152 PLN03088 SGT1, suppressor of 98.5 7.6E-06 1.6E-10 69.9 14.4 96 36-139 5-100 (356)
153 COG4235 Cytochrome c biogenesi 98.4 1.7E-05 3.7E-10 63.3 14.7 115 12-138 139-256 (287)
154 PF13414 TPR_11: TPR repeat; P 98.4 1.9E-06 4.1E-11 54.3 7.5 65 33-102 3-68 (69)
155 KOG0553 TPR repeat-containing 98.4 6.9E-06 1.5E-10 65.1 11.4 136 34-179 82-221 (304)
156 CHL00033 ycf3 photosystem I as 98.4 1.2E-05 2.7E-10 60.9 12.7 117 9-132 13-136 (168)
157 PRK02603 photosystem I assembl 98.4 3.7E-05 8E-10 58.5 15.2 88 72-160 35-122 (172)
158 PRK02603 photosystem I assembl 98.4 3.7E-05 8.1E-10 58.5 15.2 97 32-133 34-130 (172)
159 KOG0553 TPR repeat-containing 98.4 1.4E-05 3E-10 63.4 12.3 107 77-189 86-192 (304)
160 PF12895 Apc3: Anaphase-promot 98.4 2.7E-06 5.9E-11 55.9 7.3 82 46-134 2-83 (84)
161 PF14938 SNAP: Soluble NSF att 98.3 0.00012 2.5E-09 60.7 18.3 208 35-276 37-264 (282)
162 PRK10866 outer membrane biogen 98.3 0.00039 8.5E-09 55.8 20.6 179 185-382 38-240 (243)
163 KOG2041 WD40 repeat protein [G 98.3 0.001 2.3E-08 59.2 23.8 138 40-205 767-904 (1189)
164 PF13432 TPR_16: Tetratricopep 98.3 5.2E-06 1.1E-10 51.5 7.5 61 38-103 2-62 (65)
165 PF10037 MRP-S27: Mitochondria 98.3 2.7E-05 5.9E-10 66.7 13.9 117 248-364 65-183 (429)
166 PF12688 TPR_5: Tetratrico pep 98.3 7.2E-05 1.6E-09 52.2 13.5 101 35-137 3-103 (120)
167 KOG0550 Molecular chaperone (D 98.3 0.0011 2.4E-08 55.3 22.1 264 3-279 57-351 (486)
168 CHL00033 ycf3 photosystem I as 98.3 2.9E-05 6.4E-10 58.8 12.7 84 71-155 34-117 (168)
169 PF12688 TPR_5: Tetratrico pep 98.3 3.3E-05 7.1E-10 53.9 11.5 109 3-120 9-117 (120)
170 cd00189 TPR Tetratricopeptide 98.3 2.6E-05 5.7E-10 52.6 10.9 93 288-382 4-96 (100)
171 PF13525 YfiO: Outer membrane 98.2 0.0013 2.8E-08 51.5 21.5 180 33-233 5-197 (203)
172 TIGR00756 PPR pentatricopeptid 98.2 2.5E-06 5.3E-11 45.3 4.2 33 111-143 2-34 (35)
173 TIGR00756 PPR pentatricopeptid 98.2 2.8E-06 6.2E-11 45.0 4.2 33 321-353 2-34 (35)
174 PF10037 MRP-S27: Mitochondria 98.2 4.4E-05 9.6E-10 65.4 13.3 119 108-226 65-185 (429)
175 PF13812 PPR_3: Pentatricopept 98.2 3.2E-06 6.9E-11 44.5 4.2 32 111-142 3-34 (34)
176 PF05843 Suf: Suppressor of fo 98.2 0.00013 2.9E-09 60.1 15.3 130 35-173 3-136 (280)
177 PF14938 SNAP: Soluble NSF att 98.2 0.00022 4.7E-09 59.1 16.3 146 151-311 101-264 (282)
178 PF13812 PPR_3: Pentatricopept 98.2 4.7E-06 1E-10 43.8 4.1 33 320-352 2-34 (34)
179 PF14559 TPR_19: Tetratricopep 98.1 7.6E-06 1.7E-10 51.3 5.7 52 7-62 3-54 (68)
180 PF13432 TPR_16: Tetratricopep 98.1 7.7E-06 1.7E-10 50.7 5.6 58 2-63 4-61 (65)
181 PF08579 RPM2: Mitochondrial r 98.1 9.6E-05 2.1E-09 49.6 10.6 79 113-191 29-116 (120)
182 PF14559 TPR_19: Tetratricopep 98.1 1.7E-05 3.6E-10 49.7 7.0 54 44-102 2-55 (68)
183 PRK10153 DNA-binding transcrip 98.1 0.0004 8.7E-09 62.2 17.9 135 69-208 334-482 (517)
184 KOG1130 Predicted G-alpha GTPa 98.1 4.5E-05 9.7E-10 63.3 10.6 272 40-312 24-343 (639)
185 PRK10153 DNA-binding transcrip 98.1 0.00047 1E-08 61.8 17.9 135 32-174 336-483 (517)
186 KOG2796 Uncharacterized conser 98.1 0.0024 5.2E-08 50.1 19.1 132 111-243 179-315 (366)
187 PF13525 YfiO: Outer membrane 98.1 0.0012 2.6E-08 51.7 18.2 67 72-138 5-71 (203)
188 PRK10803 tol-pal system protei 98.1 0.00014 3.1E-09 58.8 13.2 103 34-138 143-246 (263)
189 PRK10803 tol-pal system protei 98.1 5.3E-05 1.1E-09 61.3 10.7 96 6-104 154-249 (263)
190 PF05843 Suf: Suppressor of fo 98.1 0.00014 2.9E-09 60.0 13.0 131 215-348 2-136 (280)
191 KOG1130 Predicted G-alpha GTPa 98.0 5E-05 1.1E-09 63.0 9.4 273 4-277 26-343 (639)
192 PF08579 RPM2: Mitochondrial r 98.0 0.00021 4.6E-09 48.0 10.4 76 291-366 32-116 (120)
193 PF13414 TPR_11: TPR repeat; P 98.0 3.5E-05 7.6E-10 48.4 6.7 65 71-138 2-67 (69)
194 PF13281 DUF4071: Domain of un 98.0 0.0033 7.1E-08 53.1 19.4 90 27-119 135-227 (374)
195 PF07079 DUF1347: Protein of u 98.0 0.0083 1.8E-07 51.0 33.5 370 4-382 15-523 (549)
196 COG4235 Cytochrome c biogenesi 98.0 0.00096 2.1E-08 53.6 15.3 116 90-210 140-258 (287)
197 COG1729 Uncharacterized protei 97.9 0.00017 3.7E-09 57.0 10.1 101 36-138 144-244 (262)
198 COG3898 Uncharacterized membra 97.9 0.011 2.5E-07 49.2 27.5 283 8-313 97-392 (531)
199 KOG0543 FKBP-type peptidyl-pro 97.9 0.00028 6E-09 58.8 11.2 127 3-137 216-354 (397)
200 COG4700 Uncharacterized protei 97.8 0.006 1.3E-07 45.3 18.6 132 212-345 87-219 (251)
201 COG5107 RNA14 Pre-mRNA 3'-end 97.8 0.015 3.3E-07 49.5 32.1 133 251-386 399-534 (660)
202 PRK15331 chaperone protein Sic 97.8 0.00098 2.1E-08 48.6 12.2 97 34-138 38-134 (165)
203 PF01535 PPR: PPR repeat; Int 97.8 2.9E-05 6.2E-10 39.7 3.3 29 321-349 2-30 (31)
204 PF01535 PPR: PPR repeat; Int 97.8 3E-05 6.5E-10 39.6 3.4 29 111-139 2-30 (31)
205 PF06239 ECSIT: Evolutionarily 97.8 0.00052 1.1E-08 52.3 11.0 88 106-193 44-152 (228)
206 PF13512 TPR_18: Tetratricopep 97.8 0.0028 6.1E-08 45.2 13.5 73 32-106 9-81 (142)
207 PF13371 TPR_9: Tetratricopept 97.8 0.00015 3.2E-09 46.1 6.5 59 40-103 2-60 (73)
208 PF13371 TPR_9: Tetratricopept 97.7 0.00028 6E-09 44.8 7.3 59 1-63 1-59 (73)
209 PLN03098 LPA1 LOW PSII ACCUMUL 97.7 0.0023 5E-08 54.8 14.1 65 32-101 74-141 (453)
210 PF13424 TPR_12: Tetratricopep 97.7 0.00021 4.5E-09 46.1 6.4 68 33-100 5-74 (78)
211 PF06239 ECSIT: Evolutionarily 97.7 0.0024 5.1E-08 48.9 12.4 35 230-264 119-153 (228)
212 KOG2796 Uncharacterized conser 97.6 0.019 4.1E-07 45.3 22.8 132 216-348 179-315 (366)
213 COG4700 Uncharacterized protei 97.6 0.014 3.1E-07 43.4 18.9 132 106-239 86-218 (251)
214 PF13281 DUF4071: Domain of un 97.6 0.029 6.4E-07 47.6 19.5 170 178-349 140-335 (374)
215 PF03704 BTAD: Bacterial trans 97.6 0.0048 1E-07 45.5 13.7 71 111-182 64-139 (146)
216 PRK15331 chaperone protein Sic 97.6 0.0038 8.2E-08 45.7 12.4 87 259-347 47-133 (165)
217 KOG2041 WD40 repeat protein [G 97.6 0.05 1.1E-06 49.1 24.2 109 33-170 796-904 (1189)
218 COG3898 Uncharacterized membra 97.6 0.033 7.2E-07 46.6 31.3 298 74-388 84-397 (531)
219 PF03704 BTAD: Bacterial trans 97.6 0.0074 1.6E-07 44.5 14.2 71 146-217 64-139 (146)
220 KOG1538 Uncharacterized conser 97.5 0.058 1.3E-06 48.3 20.8 98 216-348 749-846 (1081)
221 COG1729 Uncharacterized protei 97.5 0.004 8.6E-08 49.5 12.7 96 78-173 147-244 (262)
222 COG4105 ComL DNA uptake lipopr 97.5 0.031 6.7E-07 44.2 21.3 70 33-104 34-103 (254)
223 PRK11906 transcriptional regul 97.5 0.016 3.4E-07 50.0 16.7 149 10-169 273-432 (458)
224 KOG2280 Vacuolar assembly/sort 97.5 0.081 1.7E-06 48.2 24.7 315 38-379 442-795 (829)
225 PLN03098 LPA1 LOW PSII ACCUMUL 97.5 0.0054 1.2E-07 52.7 13.5 71 68-138 71-141 (453)
226 KOG1585 Protein required for f 97.4 0.024 5.2E-07 44.2 15.2 207 34-272 32-250 (308)
227 PF13424 TPR_12: Tetratricopep 97.4 0.00042 9.1E-09 44.7 4.9 65 72-136 5-73 (78)
228 PF04840 Vps16_C: Vps16, C-ter 97.4 0.065 1.4E-06 45.0 27.6 108 216-343 179-286 (319)
229 PF13428 TPR_14: Tetratricopep 97.4 0.00059 1.3E-08 38.1 4.7 40 35-79 3-42 (44)
230 COG4105 ComL DNA uptake lipopr 97.3 0.052 1.1E-06 43.0 20.5 82 74-155 36-117 (254)
231 KOG0543 FKBP-type peptidyl-pro 97.3 0.012 2.5E-07 49.5 13.5 110 36-173 211-320 (397)
232 KOG1585 Protein required for f 97.3 0.053 1.1E-06 42.4 16.4 211 70-309 29-252 (308)
233 PF08631 SPO22: Meiosis protei 97.3 0.077 1.7E-06 43.9 24.4 131 5-138 3-150 (278)
234 COG4785 NlpI Lipoprotein NlpI, 97.3 0.055 1.2E-06 41.5 17.3 66 69-137 96-161 (297)
235 PF13512 TPR_18: Tetratricopep 97.2 0.019 4.1E-07 41.1 12.1 85 72-156 10-94 (142)
236 KOG4555 TPR repeat-containing 97.2 0.017 3.7E-07 40.2 11.2 97 38-139 48-145 (175)
237 PF04840 Vps16_C: Vps16, C-ter 97.2 0.11 2.4E-06 43.6 27.7 282 35-380 2-288 (319)
238 PRK11906 transcriptional regul 97.1 0.046 9.9E-07 47.3 15.6 147 48-204 273-432 (458)
239 KOG1258 mRNA processing protei 97.1 0.17 3.7E-06 45.1 29.5 124 248-374 296-420 (577)
240 PF12921 ATP13: Mitochondrial 97.1 0.02 4.3E-07 40.5 10.9 52 314-365 47-99 (126)
241 PF13428 TPR_14: Tetratricopep 97.0 0.0034 7.3E-08 35.0 5.4 41 73-116 2-42 (44)
242 COG3118 Thioredoxin domain-con 97.0 0.13 2.7E-06 41.7 15.8 145 118-266 143-289 (304)
243 PF08631 SPO22: Meiosis protei 97.0 0.16 3.5E-06 42.0 25.6 162 215-379 85-271 (278)
244 PF10300 DUF3808: Protein of u 97.0 0.07 1.5E-06 47.8 16.0 165 35-207 190-375 (468)
245 KOG4555 TPR repeat-containing 96.9 0.019 4E-07 40.0 9.4 93 4-101 52-144 (175)
246 COG5107 RNA14 Pre-mRNA 3'-end 96.9 0.22 4.8E-06 42.8 21.4 223 33-278 302-531 (660)
247 PF12921 ATP13: Mitochondrial 96.9 0.042 9.1E-07 38.9 11.1 29 33-61 2-30 (126)
248 PF10300 DUF3808: Protein of u 96.8 0.16 3.5E-06 45.5 17.0 179 53-243 177-376 (468)
249 KOG2610 Uncharacterized conser 96.8 0.069 1.5E-06 43.9 12.9 118 8-133 116-233 (491)
250 KOG1941 Acetylcholine receptor 96.8 0.03 6.5E-07 46.4 11.0 95 73-168 84-186 (518)
251 COG3118 Thioredoxin domain-con 96.8 0.22 4.9E-06 40.4 17.3 147 38-193 139-286 (304)
252 KOG1258 mRNA processing protei 96.7 0.39 8.5E-06 42.9 25.6 327 33-384 45-396 (577)
253 PF07079 DUF1347: Protein of u 96.7 0.33 7.2E-06 41.9 33.3 347 5-361 89-532 (549)
254 PF04053 Coatomer_WDAD: Coatom 96.6 0.1 2.2E-06 46.1 14.2 161 39-239 267-427 (443)
255 PF04053 Coatomer_WDAD: Coatom 96.6 0.16 3.4E-06 45.0 15.3 165 188-386 270-434 (443)
256 COG0457 NrfG FOG: TPR repeat [ 96.6 0.26 5.5E-06 39.5 25.7 225 46-278 36-265 (291)
257 KOG3941 Intermediate in Toll s 96.6 0.029 6.2E-07 44.8 9.2 91 104-194 62-173 (406)
258 KOG1538 Uncharacterized conser 96.5 0.11 2.4E-06 46.6 13.5 203 19-243 624-846 (1081)
259 COG4649 Uncharacterized protei 96.5 0.2 4.4E-06 37.0 15.1 123 84-207 70-195 (221)
260 KOG2610 Uncharacterized conser 96.4 0.15 3.2E-06 42.0 12.7 116 46-167 116-232 (491)
261 PF13431 TPR_17: Tetratricopep 96.4 0.0039 8.4E-08 32.4 2.6 32 56-92 2-33 (34)
262 PF04184 ST7: ST7 protein; In 96.4 0.6 1.3E-05 41.0 17.0 150 38-207 173-323 (539)
263 KOG2280 Vacuolar assembly/sort 96.3 0.91 2E-05 41.9 23.8 313 2-343 444-794 (829)
264 KOG1941 Acetylcholine receptor 96.2 0.6 1.3E-05 39.1 20.5 234 41-277 14-274 (518)
265 KOG4234 TPR repeat-containing 96.2 0.04 8.7E-07 41.6 7.6 101 35-138 97-197 (271)
266 COG0457 NrfG FOG: TPR repeat [ 96.1 0.52 1.1E-05 37.6 29.2 223 123-347 37-264 (291)
267 PF09613 HrpB1_HrpK: Bacterial 96.1 0.36 7.7E-06 35.5 13.6 62 35-101 12-73 (160)
268 COG2909 MalT ATP-dependent tra 96.1 1.4 3E-05 41.7 28.4 226 154-379 425-684 (894)
269 PF04184 ST7: ST7 protein; In 96.0 0.98 2.1E-05 39.7 16.6 58 289-346 264-322 (539)
270 KOG2114 Vacuolar assembly/sort 96.0 1.4 3.1E-05 41.3 21.6 116 2-134 341-456 (933)
271 PF13176 TPR_7: Tetratricopept 95.9 0.02 4.3E-07 30.2 3.8 27 35-61 1-27 (36)
272 smart00299 CLH Clathrin heavy 95.7 0.53 1.1E-05 34.3 15.3 84 219-310 12-95 (140)
273 COG3629 DnrI DNA-binding trans 95.6 0.21 4.6E-06 40.7 10.3 79 109-188 153-236 (280)
274 PF07719 TPR_2: Tetratricopept 95.6 0.041 9E-07 28.3 4.4 28 35-62 3-30 (34)
275 PF00515 TPR_1: Tetratricopept 95.6 0.042 9.2E-07 28.3 4.3 28 35-62 3-30 (34)
276 PF09205 DUF1955: Domain of un 95.6 0.51 1.1E-05 33.2 13.0 61 148-209 90-150 (161)
277 COG4455 ImpE Protein of avirul 95.6 0.12 2.7E-06 39.7 8.1 80 35-119 3-82 (273)
278 COG3629 DnrI DNA-binding trans 95.6 0.22 4.8E-06 40.6 10.1 80 72-154 153-237 (280)
279 smart00299 CLH Clathrin heavy 95.5 0.64 1.4E-05 33.8 14.9 84 184-275 12-95 (140)
280 PF10602 RPN7: 26S proteasome 95.5 0.27 5.9E-06 37.4 10.0 97 110-206 37-140 (177)
281 PF00515 TPR_1: Tetratricopept 95.5 0.041 8.9E-07 28.4 4.0 32 73-104 2-33 (34)
282 PF13431 TPR_17: Tetratricopep 95.5 0.025 5.4E-07 29.3 3.1 32 95-129 2-33 (34)
283 PF07719 TPR_2: Tetratricopept 95.5 0.049 1.1E-06 28.0 4.3 31 73-103 2-32 (34)
284 KOG4234 TPR repeat-containing 95.4 0.21 4.6E-06 37.9 8.6 94 79-173 102-197 (271)
285 COG4649 Uncharacterized protei 95.3 0.81 1.8E-05 34.0 13.9 138 108-246 58-199 (221)
286 TIGR02561 HrpB1_HrpK type III 95.3 0.73 1.6E-05 33.3 12.4 61 36-101 13-73 (153)
287 PF10602 RPN7: 26S proteasome 95.3 0.31 6.7E-06 37.1 9.7 63 74-136 38-100 (177)
288 KOG1920 IkappaB kinase complex 95.2 3.4 7.4E-05 40.6 22.5 83 253-347 943-1027(1265)
289 PF06552 TOM20_plant: Plant sp 95.2 0.24 5.2E-06 37.0 8.4 109 11-138 7-136 (186)
290 PF13176 TPR_7: Tetratricopept 95.2 0.035 7.6E-07 29.2 3.1 24 357-380 2-25 (36)
291 PRK15180 Vi polysaccharide bio 95.1 1.6 3.5E-05 38.2 14.2 127 39-174 295-421 (831)
292 COG2976 Uncharacterized protei 95.0 0.2 4.4E-06 37.9 7.8 117 16-139 73-189 (207)
293 PF09205 DUF1955: Domain of un 95.0 0.84 1.8E-05 32.2 13.4 138 225-384 13-150 (161)
294 KOG3941 Intermediate in Toll s 94.9 0.33 7.1E-06 39.1 9.0 90 141-230 64-174 (406)
295 PF06552 TOM20_plant: Plant sp 94.9 0.44 9.6E-06 35.7 9.1 110 49-174 7-137 (186)
296 PF11207 DUF2989: Protein of u 94.9 1.3 2.9E-05 34.0 12.2 80 81-164 116-198 (203)
297 PF04097 Nic96: Nup93/Nic96; 94.9 3.5 7.5E-05 38.7 19.2 234 152-392 266-543 (613)
298 COG4785 NlpI Lipoprotein NlpI, 94.6 1.7 3.6E-05 33.8 17.7 64 179-243 99-162 (297)
299 KOG4648 Uncharacterized conser 94.3 0.39 8.4E-06 39.8 8.4 94 37-138 101-194 (536)
300 PF10345 Cohesin_load: Cohesin 94.3 4.7 0.0001 37.9 32.2 194 12-206 38-252 (608)
301 KOG4648 Uncharacterized conser 94.2 0.2 4.4E-06 41.4 6.7 91 3-103 105-196 (536)
302 PF13170 DUF4003: Protein of u 94.1 3 6.5E-05 34.9 18.9 131 161-293 79-226 (297)
303 COG2909 MalT ATP-dependent tra 94.1 5.7 0.00012 37.9 26.8 222 120-344 426-684 (894)
304 KOG2114 Vacuolar assembly/sort 93.9 5.8 0.00013 37.5 26.8 120 35-168 336-455 (933)
305 KOG0890 Protein kinase of the 93.9 11 0.00023 40.5 25.8 62 284-348 1670-1731(2382)
306 PF09613 HrpB1_HrpK: Bacterial 93.9 1.9 4.1E-05 31.8 13.5 89 81-174 19-107 (160)
307 KOG1550 Extracellular protein 93.9 5.4 0.00012 37.0 26.2 278 88-386 228-541 (552)
308 PRK15180 Vi polysaccharide bio 93.8 4.3 9.4E-05 35.7 26.8 124 5-141 299-423 (831)
309 cd00923 Cyt_c_Oxidase_Va Cytoc 93.8 0.29 6.3E-06 32.2 5.4 49 299-347 22-70 (103)
310 PF13174 TPR_6: Tetratricopept 93.7 0.15 3.3E-06 25.8 3.6 28 35-62 2-29 (33)
311 PF08424 NRDE-2: NRDE-2, neces 93.7 4 8.6E-05 34.8 16.6 107 18-136 8-129 (321)
312 KOG4642 Chaperone-dependent E3 93.5 2.6 5.7E-05 33.3 11.1 84 44-135 21-104 (284)
313 PF13181 TPR_8: Tetratricopept 93.5 0.2 4.4E-06 25.6 3.9 27 75-101 4-30 (34)
314 PF13181 TPR_8: Tetratricopept 93.5 0.24 5.1E-06 25.4 4.1 30 34-63 2-31 (34)
315 KOG1550 Extracellular protein 93.4 6.6 0.00014 36.4 25.0 274 49-349 228-539 (552)
316 KOG4642 Chaperone-dependent E3 93.4 2.5 5.5E-05 33.4 10.8 121 80-205 18-143 (284)
317 PF10345 Cohesin_load: Cohesin 93.3 7.4 0.00016 36.7 31.4 377 3-382 108-605 (608)
318 PF13374 TPR_10: Tetratricopep 93.2 0.25 5.4E-06 26.7 4.1 29 34-62 3-31 (42)
319 KOG0890 Protein kinase of the 93.2 14 0.00031 39.6 24.8 323 38-383 1388-1731(2382)
320 PF07035 Mic1: Colon cancer-as 93.1 2.8 6.1E-05 31.4 15.1 133 165-311 15-147 (167)
321 KOG0276 Vesicle coat complex C 92.9 3.1 6.7E-05 37.7 12.0 97 226-343 649-745 (794)
322 PRK11619 lytic murein transgly 92.9 8.6 0.00019 36.3 29.0 99 48-160 81-179 (644)
323 PF02284 COX5A: Cytochrome c o 92.9 0.5 1.1E-05 31.5 5.5 46 302-347 28-73 (108)
324 PF11207 DUF2989: Protein of u 92.7 3 6.6E-05 32.1 10.3 72 161-233 123-197 (203)
325 PF13174 TPR_6: Tetratricopept 92.7 0.26 5.6E-06 24.9 3.5 28 75-102 3-30 (33)
326 PF02259 FAT: FAT domain; Int 92.5 6.5 0.00014 33.9 23.2 65 178-242 145-212 (352)
327 PF13170 DUF4003: Protein of u 92.2 6.3 0.00014 33.0 20.2 147 195-343 78-241 (297)
328 COG2976 Uncharacterized protei 92.1 4.3 9.3E-05 31.1 13.6 88 117-209 97-189 (207)
329 KOG0276 Vesicle coat complex C 92.1 5.1 0.00011 36.4 12.2 151 6-205 597-747 (794)
330 PRK11619 lytic murein transgly 91.9 11 0.00025 35.5 31.1 142 37-194 37-178 (644)
331 PF07035 Mic1: Colon cancer-as 91.9 4.2 9.1E-05 30.5 14.6 32 236-267 16-47 (167)
332 KOG4570 Uncharacterized conser 91.8 4.4 9.5E-05 33.6 10.7 99 176-278 61-164 (418)
333 KOG4507 Uncharacterized conser 91.7 1.8 3.9E-05 39.0 9.2 126 19-155 596-721 (886)
334 cd00923 Cyt_c_Oxidase_Va Cytoc 91.7 2.1 4.7E-05 28.3 7.3 42 165-206 28-69 (103)
335 PF02259 FAT: FAT domain; Int 91.5 8.4 0.00018 33.2 25.0 68 141-208 143-213 (352)
336 PF02284 COX5A: Cytochrome c o 91.5 3 6.5E-05 28.0 8.7 45 233-277 29-73 (108)
337 PF07721 TPR_4: Tetratricopept 91.4 0.37 8.1E-06 23.0 2.9 22 36-57 4-25 (26)
338 TIGR02561 HrpB1_HrpK type III 91.1 4.6 9.9E-05 29.4 12.2 53 84-139 22-74 (153)
339 PF13374 TPR_10: Tetratricopep 91.0 0.69 1.5E-05 24.9 4.2 25 111-135 4-28 (42)
340 KOG0686 COP9 signalosome, subu 91.0 9.6 0.00021 32.9 14.1 62 75-136 153-214 (466)
341 PF07721 TPR_4: Tetratricopept 90.8 0.47 1E-05 22.6 2.9 23 74-96 3-25 (26)
342 PF07163 Pex26: Pex26 protein; 90.7 3.5 7.5E-05 33.5 9.0 131 35-167 37-181 (309)
343 KOG4570 Uncharacterized conser 90.6 8.3 0.00018 32.0 11.2 96 215-312 65-163 (418)
344 COG3947 Response regulator con 90.6 1.5 3.2E-05 35.7 7.0 60 74-136 281-340 (361)
345 KOG4077 Cytochrome c oxidase, 90.5 1.4 2.9E-05 30.8 5.8 46 302-347 67-112 (149)
346 PF07163 Pex26: Pex26 protein; 90.4 8.6 0.00019 31.4 13.3 88 150-237 89-181 (309)
347 PRK09687 putative lyase; Provi 89.8 10 0.00023 31.5 27.8 232 108-364 36-277 (280)
348 PF00637 Clathrin: Region in C 89.8 0.11 2.5E-06 37.9 0.4 84 255-345 13-96 (143)
349 KOG1308 Hsp70-interacting prot 89.8 0.22 4.7E-06 41.2 1.9 87 85-175 127-213 (377)
350 PF10579 Rapsyn_N: Rapsyn N-te 89.7 0.73 1.6E-05 29.1 3.7 48 7-55 18-65 (80)
351 PF08424 NRDE-2: NRDE-2, neces 89.6 12 0.00026 31.9 18.1 99 69-171 16-129 (321)
352 KOG0376 Serine-threonine phosp 89.6 0.78 1.7E-05 40.0 5.1 104 3-119 12-115 (476)
353 smart00028 TPR Tetratricopepti 89.1 0.94 2E-05 22.1 3.7 25 75-99 4-28 (34)
354 TIGR02508 type_III_yscG type I 89.0 4.7 0.0001 27.0 7.1 50 328-383 48-97 (115)
355 COG4455 ImpE Protein of avirul 88.8 5.3 0.00011 31.2 8.4 77 251-328 3-81 (273)
356 KOG0545 Aryl-hydrocarbon recep 88.5 11 0.00024 30.1 10.7 95 5-104 188-296 (329)
357 KOG0376 Serine-threonine phosp 88.5 1.2 2.5E-05 39.0 5.4 109 36-154 7-115 (476)
358 TIGR03504 FimV_Cterm FimV C-te 88.4 0.86 1.9E-05 25.2 3.1 23 360-382 5-27 (44)
359 PF09986 DUF2225: Uncharacteri 88.3 11 0.00024 29.8 10.4 24 115-138 171-194 (214)
360 smart00028 TPR Tetratricopepti 87.8 1.3 2.8E-05 21.5 3.7 28 35-62 3-30 (34)
361 PF09986 DUF2225: Uncharacteri 87.7 6.8 0.00015 31.0 8.9 28 360-387 171-198 (214)
362 PF12862 Apc5: Anaphase-promot 87.3 3.4 7.4E-05 27.5 6.2 57 6-62 9-70 (94)
363 PRK10941 hypothetical protein; 87.0 14 0.00031 30.4 10.6 76 75-153 184-260 (269)
364 TIGR03504 FimV_Cterm FimV C-te 87.0 1.8 3.8E-05 24.0 3.8 23 325-347 5-27 (44)
365 KOG1464 COP9 signalosome, subu 86.7 16 0.00034 29.8 19.1 213 155-368 38-286 (440)
366 PF00637 Clathrin: Region in C 86.5 0.33 7.1E-06 35.5 1.0 128 220-369 13-140 (143)
367 PF13934 ELYS: Nuclear pore co 86.0 8.3 0.00018 30.8 8.7 107 5-131 88-198 (226)
368 COG5159 RPN6 26S proteasome re 85.9 12 0.00027 30.6 9.3 132 2-135 10-151 (421)
369 KOG1586 Protein required for f 85.9 16 0.00034 29.1 19.2 20 42-61 23-42 (288)
370 KOG1308 Hsp70-interacting prot 85.9 0.53 1.1E-05 39.1 1.9 122 40-171 121-242 (377)
371 PF10579 Rapsyn_N: Rapsyn N-te 84.9 4.1 8.8E-05 25.9 5.0 48 331-378 18-67 (80)
372 KOG3364 Membrane protein invol 84.8 12 0.00026 26.8 8.6 67 318-385 31-102 (149)
373 PF14853 Fis1_TPR_C: Fis1 C-te 84.4 5.7 0.00012 23.1 5.2 28 36-63 4-31 (53)
374 COG1747 Uncharacterized N-term 84.4 31 0.00067 31.1 23.1 179 107-293 64-248 (711)
375 KOG2471 TPR repeat-containing 84.3 11 0.00024 33.4 9.0 148 4-157 215-382 (696)
376 KOG4507 Uncharacterized conser 83.9 12 0.00025 34.2 9.2 106 8-120 226-331 (886)
377 KOG2066 Vacuolar assembly/sort 83.1 44 0.00095 31.9 27.1 153 40-206 363-532 (846)
378 KOG2396 HAT (Half-A-TPR) repea 82.7 36 0.00077 30.6 31.7 103 281-386 456-563 (568)
379 PF11817 Foie-gras_1: Foie gra 82.7 11 0.00024 30.6 8.3 60 111-170 180-244 (247)
380 PRK09687 putative lyase; Provi 82.1 28 0.00061 29.0 29.1 235 69-330 34-278 (280)
381 PF12862 Apc5: Anaphase-promot 81.8 9.5 0.00021 25.4 6.4 59 43-101 8-70 (94)
382 COG5187 RPN7 26S proteasome re 81.4 28 0.0006 28.8 9.6 105 67-173 110-221 (412)
383 KOG0687 26S proteasome regulat 81.2 30 0.00065 29.1 9.9 134 33-173 70-210 (393)
384 PF04097 Nic96: Nup93/Nic96; 81.0 51 0.0011 31.2 18.7 87 222-313 266-356 (613)
385 PF14853 Fis1_TPR_C: Fis1 C-te 80.7 8.8 0.00019 22.3 5.1 30 75-104 4-33 (53)
386 KOG4279 Serine/threonine prote 80.3 43 0.00092 31.9 11.5 127 18-146 186-322 (1226)
387 KOG1586 Protein required for f 80.1 29 0.00062 27.8 19.1 54 193-246 128-186 (288)
388 PF09477 Type_III_YscG: Bacter 79.8 17 0.00036 24.8 7.9 79 299-384 21-99 (116)
389 COG1747 Uncharacterized N-term 79.3 49 0.0011 30.0 24.7 179 141-327 63-247 (711)
390 PF11846 DUF3366: Domain of un 79.2 12 0.00026 29.1 7.2 32 316-347 141-172 (193)
391 KOG2396 HAT (Half-A-TPR) repea 79.0 49 0.0011 29.8 29.7 67 69-138 102-169 (568)
392 KOG0128 RNA-binding protein SA 78.7 65 0.0014 31.1 29.2 198 33-242 113-340 (881)
393 KOG0551 Hsp90 co-chaperone CNS 78.7 11 0.00025 31.6 6.9 108 26-138 75-182 (390)
394 KOG1920 IkappaB kinase complex 78.3 80 0.0017 31.9 26.3 111 252-382 911-1027(1265)
395 TIGR02508 type_III_yscG type I 77.3 19 0.00042 24.2 8.5 51 118-174 48-98 (115)
396 KOG1839 Uncharacterized protei 77.2 46 0.001 33.8 11.5 127 8-137 945-1085(1236)
397 cd00280 TRFH Telomeric Repeat 77.2 12 0.00025 28.5 6.0 68 299-369 84-158 (200)
398 COG5108 RPO41 Mitochondrial DN 76.8 29 0.00062 32.4 9.3 92 38-136 33-130 (1117)
399 cd00280 TRFH Telomeric Repeat 76.3 28 0.00061 26.5 7.7 66 264-332 84-156 (200)
400 PF14561 TPR_20: Tetratricopep 76.2 19 0.00042 23.7 9.2 55 69-124 19-73 (90)
401 KOG0686 COP9 signalosome, subu 76.1 53 0.0012 28.7 15.3 67 33-101 150-216 (466)
402 COG3947 Response regulator con 75.3 46 0.001 27.6 15.5 58 183-241 283-340 (361)
403 PRK10941 hypothetical protein; 74.9 47 0.001 27.5 10.6 80 111-191 183-263 (269)
404 PF11663 Toxin_YhaV: Toxin wit 73.7 5.1 0.00011 28.5 3.2 33 330-364 106-138 (140)
405 PRK13184 pknD serine/threonine 73.3 1.1E+02 0.0023 30.8 26.9 95 3-104 483-584 (932)
406 PHA02875 ankyrin repeat protei 73.2 67 0.0015 28.5 11.9 213 116-355 6-231 (413)
407 COG4976 Predicted methyltransf 72.8 9.9 0.00021 30.1 4.9 57 3-63 3-59 (287)
408 KOG4521 Nuclear pore complex, 72.3 1.2E+02 0.0025 30.9 14.6 95 37-131 924-1043(1480)
409 KOG2659 LisH motif-containing 72.2 48 0.001 26.4 9.0 99 246-346 23-130 (228)
410 PF14689 SPOB_a: Sensor_kinase 72.1 11 0.00025 22.7 4.2 27 356-382 25-51 (62)
411 KOG4521 Nuclear pore complex, 71.9 1.2E+02 0.0026 30.8 13.6 120 146-271 985-1124(1480)
412 COG0790 FOG: TPR repeat, SEL1 71.7 58 0.0013 27.2 23.9 150 84-244 53-221 (292)
413 cd08819 CARD_MDA5_2 Caspase ac 71.6 25 0.00055 22.9 7.2 64 304-373 22-85 (88)
414 COG0790 FOG: TPR repeat, SEL1 71.1 61 0.0013 27.1 24.4 153 43-210 51-222 (292)
415 PF07575 Nucleopor_Nup85: Nup8 70.5 63 0.0014 30.3 10.6 226 40-293 304-539 (566)
416 cd08819 CARD_MDA5_2 Caspase ac 70.3 27 0.00059 22.8 7.0 13 193-205 50-62 (88)
417 KOG3364 Membrane protein invol 70.0 39 0.00084 24.4 7.8 66 108-173 31-100 (149)
418 PF14689 SPOB_a: Sensor_kinase 69.7 21 0.00046 21.5 5.0 21 185-205 29-49 (62)
419 KOG2063 Vacuolar assembly/sort 69.5 1.2E+02 0.0026 30.0 18.3 187 146-332 506-745 (877)
420 COG0735 Fur Fe2+/Zn2+ uptake r 69.4 35 0.00077 25.0 7.1 30 151-180 27-56 (145)
421 KOG3824 Huntingtin interacting 69.2 23 0.00049 29.5 6.4 58 42-104 125-182 (472)
422 KOG2066 Vacuolar assembly/sort 68.9 1.1E+02 0.0025 29.4 26.5 152 3-171 364-532 (846)
423 PF00244 14-3-3: 14-3-3 protei 68.9 61 0.0013 26.2 10.3 59 184-242 6-65 (236)
424 PF13929 mRNA_stabil: mRNA sta 68.5 68 0.0015 26.7 23.9 96 213-308 163-262 (292)
425 PF04190 DUF410: Protein of un 68.5 66 0.0014 26.5 18.2 27 178-204 89-115 (260)
426 PF11846 DUF3366: Domain of un 68.5 40 0.00086 26.2 7.7 33 281-313 141-173 (193)
427 PF11848 DUF3368: Domain of un 68.0 20 0.00043 20.3 5.1 32 330-361 13-44 (48)
428 PF09670 Cas_Cas02710: CRISPR- 67.9 86 0.0019 27.6 10.8 57 116-173 138-198 (379)
429 PF07720 TPR_3: Tetratricopept 67.8 16 0.00035 19.1 3.7 22 35-56 3-24 (36)
430 smart00386 HAT HAT (Half-A-TPR 67.7 13 0.00028 18.1 3.6 16 47-62 1-16 (33)
431 KOG0991 Replication factor C, 67.3 64 0.0014 25.9 12.8 136 115-260 136-283 (333)
432 COG4976 Predicted methyltransf 67.2 13 0.00029 29.4 4.5 58 41-103 3-60 (287)
433 COG0735 Fur Fe2+/Zn2+ uptake r 66.8 48 0.001 24.3 7.7 41 291-331 27-67 (145)
434 PF14561 TPR_20: Tetratricopep 66.2 35 0.00076 22.5 8.9 52 108-159 21-73 (90)
435 KOG4814 Uncharacterized conser 66.0 71 0.0015 29.9 9.3 92 42-136 363-455 (872)
436 PF15297 CKAP2_C: Cytoskeleton 65.6 72 0.0016 27.3 8.7 62 126-189 120-185 (353)
437 PF11817 Foie-gras_1: Foie gra 65.1 43 0.00092 27.3 7.5 58 323-380 182-244 (247)
438 KOG4077 Cytochrome c oxidase, 65.0 47 0.001 23.6 9.3 45 233-277 68-112 (149)
439 PF11848 DUF3368: Domain of un 65.0 23 0.0005 20.0 5.0 30 121-150 14-43 (48)
440 KOG1839 Uncharacterized protei 63.7 1.8E+02 0.004 29.9 12.3 131 176-306 970-1121(1236)
441 KOG0551 Hsp90 co-chaperone CNS 63.5 94 0.002 26.5 8.8 97 75-172 84-181 (390)
442 PF04762 IKI3: IKI3 family; I 63.3 1.7E+02 0.0038 29.5 12.4 193 2-205 701-927 (928)
443 PF12968 DUF3856: Domain of Un 63.2 17 0.00037 25.4 4.0 93 6-98 20-126 (144)
444 KOG0687 26S proteasome regulat 63.0 95 0.0021 26.4 14.3 96 180-277 105-209 (393)
445 COG2178 Predicted RNA-binding 62.9 69 0.0015 24.8 9.6 61 77-137 34-97 (204)
446 KOG3824 Huntingtin interacting 62.7 21 0.00046 29.7 5.1 55 5-63 126-180 (472)
447 PHA02875 ankyrin repeat protei 62.3 1.2E+02 0.0025 27.1 15.8 201 92-319 15-230 (413)
448 PF09454 Vps23_core: Vps23 cor 62.2 34 0.00073 20.9 4.8 30 145-174 9-38 (65)
449 KOG4567 GTPase-activating prot 61.8 68 0.0015 26.9 7.7 58 269-331 263-320 (370)
450 PF13929 mRNA_stabil: mRNA sta 60.9 98 0.0021 25.8 22.2 133 230-362 144-286 (292)
451 KOG2297 Predicted translation 60.3 1E+02 0.0022 25.9 16.2 70 226-304 267-341 (412)
452 PRK10564 maltose regulon perip 60.2 23 0.0005 29.4 5.0 27 149-175 262-288 (303)
453 KOG2471 TPR repeat-containing 60.1 1.4E+02 0.0029 27.2 14.3 106 223-330 249-380 (696)
454 PRK10564 maltose regulon perip 59.7 22 0.00047 29.6 4.8 42 106-147 253-295 (303)
455 PF11663 Toxin_YhaV: Toxin wit 59.7 14 0.00031 26.3 3.3 30 227-258 108-137 (140)
456 KOG3807 Predicted membrane pro 59.3 1.1E+02 0.0024 26.0 14.2 57 149-207 280-339 (556)
457 PF10516 SHNi-TPR: SHNi-TPR; 59.2 26 0.00056 18.7 3.5 28 35-62 3-30 (38)
458 KOG2582 COP9 signalosome, subu 58.6 1.2E+02 0.0026 26.2 12.3 19 119-137 193-211 (422)
459 PF00244 14-3-3: 14-3-3 protei 58.4 98 0.0021 25.1 11.8 56 115-170 7-63 (236)
460 PF10475 DUF2450: Protein of u 58.3 1.1E+02 0.0024 25.7 10.1 114 78-204 104-222 (291)
461 KOG4814 Uncharacterized conser 57.9 1.7E+02 0.0037 27.6 15.9 92 4-101 363-457 (872)
462 PF04910 Tcf25: Transcriptiona 57.3 1.3E+02 0.0029 26.2 21.2 127 69-207 37-167 (360)
463 KOG2300 Uncharacterized conser 57.2 1.5E+02 0.0033 26.9 31.1 370 4-378 56-509 (629)
464 PF03745 DUF309: Domain of unk 56.9 42 0.0009 20.3 5.4 49 329-377 9-62 (62)
465 KOG2063 Vacuolar assembly/sort 56.1 2.2E+02 0.0047 28.4 20.4 26 75-100 507-532 (877)
466 KOG3636 Uncharacterized conser 55.5 1.5E+02 0.0033 26.4 14.3 88 138-226 177-272 (669)
467 PF04090 RNA_pol_I_TF: RNA pol 55.0 89 0.0019 24.4 7.1 27 287-313 44-70 (199)
468 PF01475 FUR: Ferric uptake re 53.9 46 0.00099 23.3 5.2 49 323-371 11-59 (120)
469 PF08311 Mad3_BUB1_I: Mad3/BUB 53.8 78 0.0017 22.5 9.0 92 3-99 34-126 (126)
470 KOG2659 LisH motif-containing 52.5 1.2E+02 0.0026 24.3 9.8 19 152-170 72-90 (228)
471 PF07064 RIC1: RIC1; InterPro 52.3 1.3E+02 0.0029 24.7 16.7 42 35-82 84-125 (258)
472 COG5108 RPO41 Mitochondrial DN 52.3 1.8E+02 0.004 27.6 9.5 91 149-242 33-131 (1117)
473 COG5159 RPN6 26S proteasome re 52.2 1.4E+02 0.003 24.9 16.6 127 114-240 8-151 (421)
474 cd07153 Fur_like Ferric uptake 52.0 60 0.0013 22.5 5.6 46 291-336 7-52 (116)
475 PF04910 Tcf25: Transcriptiona 52.0 1.6E+02 0.0036 25.7 21.6 47 120-171 21-67 (360)
476 cd07153 Fur_like Ferric uptake 51.9 51 0.0011 22.8 5.2 42 117-158 8-49 (116)
477 PF10366 Vps39_1: Vacuolar sor 51.8 50 0.0011 22.7 4.9 26 182-207 42-67 (108)
478 KOG0292 Vesicle coat complex C 51.7 77 0.0017 30.9 7.3 73 5-99 653-725 (1202)
479 PRK11639 zinc uptake transcrip 51.7 1E+02 0.0023 23.3 7.3 36 158-193 39-74 (169)
480 PF09454 Vps23_core: Vps23 cor 51.1 56 0.0012 20.0 5.2 31 319-349 8-38 (65)
481 PF10366 Vps39_1: Vacuolar sor 51.0 79 0.0017 21.8 6.3 28 320-347 40-67 (108)
482 KOG0128 RNA-binding protein SA 50.7 2.5E+02 0.0055 27.5 28.1 128 1-139 119-261 (881)
483 KOG3677 RNA polymerase I-assoc 50.5 1.1E+02 0.0023 27.1 7.4 179 146-325 237-425 (525)
484 PF13762 MNE1: Mitochondrial s 50.4 99 0.0022 22.7 10.7 78 183-260 43-126 (145)
485 PF01475 FUR: Ferric uptake re 49.3 46 0.00099 23.3 4.7 46 113-158 11-56 (120)
486 KOG3807 Predicted membrane pro 49.1 1.7E+02 0.0037 25.0 12.5 112 122-244 229-341 (556)
487 COG2256 MGS1 ATPase related to 49.0 1.9E+02 0.0042 25.6 14.9 122 143-281 191-321 (436)
488 PRK11639 zinc uptake transcrip 48.3 1.2E+02 0.0026 23.0 7.9 62 275-337 17-78 (169)
489 KOG2168 Cullins [Cell cycle co 47.6 2.9E+02 0.0062 27.2 18.0 25 365-389 718-742 (835)
490 KOG0991 Replication factor C, 47.0 1.5E+02 0.0033 23.9 13.3 34 282-316 237-270 (333)
491 PF12069 DUF3549: Protein of u 46.5 1.9E+02 0.0042 24.9 12.3 135 255-396 172-307 (340)
492 PF13762 MNE1: Mitochondrial s 46.2 1.2E+02 0.0026 22.3 10.9 81 287-367 42-128 (145)
493 PF15297 CKAP2_C: Cytoskeleton 46.1 2E+02 0.0042 24.9 10.1 64 160-225 119-186 (353)
494 PF12926 MOZART2: Mitotic-spin 46.0 83 0.0018 20.6 8.0 41 165-205 29-69 (88)
495 PRK12798 chemotaxis protein; R 45.9 2.2E+02 0.0047 25.3 20.4 227 119-353 91-329 (421)
496 PRK09462 fur ferric uptake reg 45.7 1.2E+02 0.0026 22.3 8.0 60 275-335 8-68 (148)
497 PRK09462 fur ferric uptake reg 45.6 1.2E+02 0.0026 22.3 7.4 35 159-193 32-66 (148)
498 PRK13342 recombination factor 45.2 2.3E+02 0.005 25.4 18.1 55 227-281 243-302 (413)
499 COG4259 Uncharacterized protei 44.5 97 0.0021 20.9 6.7 43 165-207 58-100 (121)
500 KOG2034 Vacuolar sorting prote 44.5 3.3E+02 0.0071 27.0 25.3 294 3-345 366-687 (911)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.3e-59 Score=434.39 Aligned_cols=372 Identities=20% Similarity=0.302 Sum_probs=348.5
Q ss_pred hhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHH
Q 016027 5 LAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCK 84 (396)
Q Consensus 5 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 84 (396)
|.+.|.+++|..+|..+. .|+ ..+|+.++.+|++.|++++|.++|+.+.+. +..|+..+|+.++.+|++
T Consensus 416 ~~~~g~~~eAl~lf~~M~----~pd---~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~----Gl~pD~~tynsLI~~y~k 484 (1060)
T PLN03218 416 CKKQRAVKEAFRFAKLIR----NPT---LSTFNMLMSVCASSQDIDGALRVLRLVQEA----GLKADCKLYTTLISTCAK 484 (1060)
T ss_pred HHHCCCHHHHHHHHHHcC----CCC---HHHHHHHHHHHHhCcCHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHh
Confidence 444444444444433322 145 779999999999999999999999999987 578999999999999999
Q ss_pred cCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHH
Q 016027 85 QGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAI 164 (396)
Q Consensus 85 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 164 (396)
.|++++|.++|++|... ++.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.
T Consensus 485 ~G~vd~A~~vf~eM~~~--Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~ 562 (1060)
T PLN03218 485 SGKVDAMFEVFHEMVNA--GVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAF 562 (1060)
T ss_pred CcCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999999986 8889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH--cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 016027 165 RLVKEMRK--EGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMIS 242 (396)
Q Consensus 165 ~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 242 (396)
+++++|.. .|+.||..+|+.++.+|++.|++++|.++|+.|.+.++.|+..+|+.++.+|++.|++++|.++|++|.+
T Consensus 563 ~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~ 642 (1060)
T PLN03218 563 DVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKK 642 (1060)
T ss_pred HHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 99999987 5789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhH
Q 016027 243 RGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTS 322 (396)
Q Consensus 243 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 322 (396)
.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|
T Consensus 643 ~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pdvvty 722 (1060)
T PLN03218 643 KGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTM 722 (1060)
T ss_pred cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhccchhhhh
Q 016027 323 TMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFKKRGMTALAQKLCNVMSSVPRSMEL 389 (396)
Q Consensus 323 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 389 (396)
+.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|.+.|++++|.+++++|.+.+..++.
T Consensus 723 N~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~ 789 (1060)
T PLN03218 723 NALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNL 789 (1060)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCH
Confidence 9999999999999999999999999999999999999999999999999999999999987766654
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.9e-58 Score=427.23 Aligned_cols=379 Identities=21% Similarity=0.256 Sum_probs=361.6
Q ss_pred ChhhhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHH
Q 016027 1 MIKVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLD 80 (396)
Q Consensus 1 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 80 (396)
|+.+|++.|+++.|.++|..+.+.+..|+ ..+|+.++.+|++.|++++|.++|++|.+. +..||..+|+.++.
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD---~~tynsLI~~y~k~G~vd~A~~vf~eM~~~----Gv~PdvvTynaLI~ 515 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKAD---CKLYTTLISTCAKSGKVDAMFEVFHEMVNA----GVEANVHTFGALID 515 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhCcCHHHHHHHHHHHHHc----CCCCCHHHHHHHHH
Confidence 47889999999999999999999888888 889999999999999999999999999987 56889999999999
Q ss_pred HHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHh--CCCCCChhHHHHHHHHHHccC
Q 016027 81 SLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRK--ENVTPNVVTYGTLVEGYCRLR 158 (396)
Q Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~ 158 (396)
+|++.|++++|.++|+.|... +..||..+|+.++.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|
T Consensus 516 gy~k~G~~eeAl~lf~~M~~~--Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G 593 (1060)
T PLN03218 516 GCARAGQVAKAFGAYGIMRSK--NVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAG 593 (1060)
T ss_pred HHHHCcCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCC
Confidence 999999999999999999886 8899999999999999999999999999999986 578999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHH
Q 016027 159 RVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILK 238 (396)
Q Consensus 159 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 238 (396)
++++|.++|+.|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+.|..||..+|+.++.+|++.|++++|.++++
T Consensus 594 ~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~ 673 (1060)
T PLN03218 594 QVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQ 673 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 016027 239 MMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDID 318 (396)
Q Consensus 239 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 318 (396)
.|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|...|+.||
T Consensus 674 eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd 753 (1060)
T PLN03218 674 DARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPN 753 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----c-------------------CCchHHHH
Q 016027 319 LDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFKK----R-------------------GMTALAQK 375 (396)
Q Consensus 319 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~-------------------g~~~~A~~ 375 (396)
..+|+.++.+|++.|++++|.+++++|.+.|+.||..+|+.++..|.+ . +..++|..
T Consensus 754 ~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~ 833 (1060)
T PLN03218 754 TITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALM 833 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHH
Confidence 999999999999999999999999999999999999999999876532 1 23467999
Q ss_pred HHHHHhccchhhh
Q 016027 376 LCNVMSSVPRSME 388 (396)
Q Consensus 376 ~~~~~~~~~~~~~ 388 (396)
+|++|.+.+..|+
T Consensus 834 lf~eM~~~Gi~Pd 846 (1060)
T PLN03218 834 VYRETISAGTLPT 846 (1060)
T ss_pred HHHHHHHCCCCCC
Confidence 9999999876655
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2e-53 Score=392.99 Aligned_cols=360 Identities=19% Similarity=0.243 Sum_probs=305.1
Q ss_pred hhhhhhccCchhHHHHHHHHhCCC-CCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHH
Q 016027 2 IKVLAKAKEFDSAWCLLLDKIGGH-EVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLD 80 (396)
Q Consensus 2 ~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 80 (396)
|..+.+.|++++|+++|..+...+ ..|+ ..+|..++.++.+.++++.|.+++..+.+. ++.|+..+++.++.
T Consensus 94 i~~l~~~g~~~~Al~~f~~m~~~~~~~~~---~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~----g~~~~~~~~n~Li~ 166 (697)
T PLN03081 94 IEKLVACGRHREALELFEILEAGCPFTLP---ASTYDALVEACIALKSIRCVKAVYWHVESS----GFEPDQYMMNRVLL 166 (697)
T ss_pred HHHHHcCCCHHHHHHHHHHHHhcCCCCCC---HHHHHHHHHHHHhCCCHHHHHHHHHHHHHh----CCCcchHHHHHHHH
Confidence 567889999999999999887654 2455 789999999999999999999999999987 56889999999999
Q ss_pred HHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCH
Q 016027 81 SLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRV 160 (396)
Q Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 160 (396)
.|++.|++++|.++|++|.. ||..+|+.++.+|.+.|++++|+++|++|.+.|+.|+..+|+.++.+|++.|..
T Consensus 167 ~y~k~g~~~~A~~lf~~m~~------~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~ 240 (697)
T PLN03081 167 MHVKCGMLIDARRLFDEMPE------RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSA 240 (697)
T ss_pred HHhcCCCHHHHHHHHhcCCC------CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcH
Confidence 99999999999999999864 689999999999999999999999999999999999999998888888888888
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHH
Q 016027 161 DRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMM 240 (396)
Q Consensus 161 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 240 (396)
+.+.+++..+.+.|+.||..+++.++.+|.+.|++++|.++|+.| ..++..+|+.++.+|++.|++++|.++|++|
T Consensus 241 ~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m----~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M 316 (697)
T PLN03081 241 RAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGM----PEKTTVAWNSMLAGYALHGYSEEALCLYYEM 316 (697)
T ss_pred HHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhC----CCCChhHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 888888888888888888888888888888888888888888877 3457778888888888888888888888888
Q ss_pred HHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh
Q 016027 241 ISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLD 320 (396)
Q Consensus 241 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 320 (396)
.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+++.++.+|++.|++++|.++|++|.+ ||..
T Consensus 317 ~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~ 392 (697)
T PLN03081 317 RDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLI 392 (697)
T ss_pred HHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCee
Confidence 888888888888888888888888888888888888888788888888888888888888888888877753 5777
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhc
Q 016027 321 TSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFKKRGMTALAQKLCNVMSS 382 (396)
Q Consensus 321 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 382 (396)
+|+.+|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|+.++|.++|+.|.+
T Consensus 393 t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~ 454 (697)
T PLN03081 393 SWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSE 454 (697)
T ss_pred eHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 78888888888888888888888887777788888888888888888888888888887765
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.3e-52 Score=387.51 Aligned_cols=364 Identities=17% Similarity=0.238 Sum_probs=291.4
Q ss_pred ChhhhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhccccc--------------
Q 016027 1 MIKVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVK-------------- 66 (396)
Q Consensus 1 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-------------- 66 (396)
|+..|.+.|+++.|.++|+++.+ |+ ..+|+.++.+|++.|++++|+++|++|.+.+..+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~----~~---~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~ 236 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPE----RN---LASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAG 236 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCC----CC---eeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhc
Confidence 46788899999999988877753 56 5579999999999999999999999887653211
Q ss_pred -----------------CCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHH
Q 016027 67 -----------------NFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAE 129 (396)
Q Consensus 67 -----------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 129 (396)
+..++..+++.|+.+|++.|++++|.++|+.|.. +|..+||.++.+|.+.|++++|.
T Consensus 237 ~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~------~~~vt~n~li~~y~~~g~~~eA~ 310 (697)
T PLN03081 237 LGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE------KTTVAWNSMLAGYALHGYSEEAL 310 (697)
T ss_pred CCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC------CChhHHHHHHHHHHhCCCHHHHH
Confidence 3455666777888888888888888888887754 47788888888888888888888
Q ss_pred HHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 016027 130 RFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCE 209 (396)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 209 (396)
++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+++.++.+|++.|++++|.++|++|.
T Consensus 311 ~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~--- 387 (697)
T PLN03081 311 CLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP--- 387 (697)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC---
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888874
Q ss_pred CCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHH-CCCCCChhhHH
Q 016027 210 PGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIE-SGYTPDRLTYH 288 (396)
Q Consensus 210 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~ 288 (396)
.+|..+|+.|+.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|..++|.++|+.|.+ .|+.|+..+|+
T Consensus 388 -~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~ 466 (697)
T PLN03081 388 -RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYA 466 (697)
T ss_pred -CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchH
Confidence 4677788888888888888888888888888888888888888888888888888888888888865 47788888888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 016027 289 ILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFKKRG 368 (396)
Q Consensus 289 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 368 (396)
.++.+|++.|++++|.++++++ +..|+..+|+.++.+|...|+++.|..+++++.+.+ +.+..+|..+++.|.+.|
T Consensus 467 ~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~-p~~~~~y~~L~~~y~~~G 542 (697)
T PLN03081 467 CMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMG-PEKLNNYVVLLNLYNSSG 542 (697)
T ss_pred hHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCC-CCCCcchHHHHHHHHhCC
Confidence 8888888888888888877654 456788888888888888888888888888876543 224567888888888888
Q ss_pred CchHHHHHHHHHhccch
Q 016027 369 MTALAQKLCNVMSSVPR 385 (396)
Q Consensus 369 ~~~~A~~~~~~~~~~~~ 385 (396)
++++|.+++++|++.+.
T Consensus 543 ~~~~A~~v~~~m~~~g~ 559 (697)
T PLN03081 543 RQAEAAKVVETLKRKGL 559 (697)
T ss_pred CHHHHHHHHHHHHHcCC
Confidence 88888888888877653
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3e-52 Score=394.01 Aligned_cols=364 Identities=16% Similarity=0.197 Sum_probs=270.3
Q ss_pred hhhhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHH
Q 016027 2 IKVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDS 81 (396)
Q Consensus 2 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 81 (396)
|..|.+.|++++|+++|.++.+.+..|+ ..+|..++.+|.+.|+.+.|.+++..+.+. ++.|+..+|+.++.+
T Consensus 260 i~~~~~~g~~~eAl~lf~~M~~~g~~Pd---~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~----g~~~d~~~~n~Li~~ 332 (857)
T PLN03077 260 ISGYFENGECLEGLELFFTMRELSVDPD---LMTITSVISACELLGDERLGREMHGYVVKT----GFAVDVSVCNSLIQM 332 (857)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCC---hhHHHHHHHHHHhcCChHHHHHHHHHHHHh----CCccchHHHHHHHHH
Confidence 4445555555555555555555544554 445555555555555555555555555554 456777788888888
Q ss_pred HHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHH
Q 016027 82 LCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVD 161 (396)
Q Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 161 (396)
|++.|++++|.++|+.|.. ||..+|+.++.+|.+.|++++|+++|++|.+.|+.||..+|+.++.+|++.|+++
T Consensus 333 y~k~g~~~~A~~vf~~m~~------~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~ 406 (857)
T PLN03077 333 YLSLGSWGEAEKVFSRMET------KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLD 406 (857)
T ss_pred HHhcCCHHHHHHHHhhCCC------CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHH
Confidence 8888888888888887753 4777888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 016027 162 RAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMI 241 (396)
Q Consensus 162 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 241 (396)
+|.++++.+.+.|+.|+..+++.++.+|.+.|++++|.++|++|. .++..+|+.++.+|++.|+.++|..+|++|.
T Consensus 407 ~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~ 482 (857)
T PLN03077 407 VGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP----EKDVISWTSIIAGLRLNNRCFEALIFFRQML 482 (857)
T ss_pred HHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 888888888888888888888888888888888888888888774 3566777777777777777777777777776
Q ss_pred HCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCC------------------------------CCChhhHHHHH
Q 016027 242 SRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGY------------------------------TPDRLTYHILL 291 (396)
Q Consensus 242 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------------------------------~~~~~~~~~l~ 291 (396)
. ++.||..+|+.++.+|++.|..+.+.+++..+.+.|+ .+|..+|+.++
T Consensus 483 ~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI 561 (857)
T PLN03077 483 L-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILL 561 (857)
T ss_pred h-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHH
Confidence 5 3677777777666666555555555555555544443 45667777788
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHHcCCc
Q 016027 292 KILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMI-RRGLVPHYLTFKRLNDEFKKRGMT 370 (396)
Q Consensus 292 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~p~~~~~~~l~~~~~~~g~~ 370 (396)
.+|++.|+.++|.++|++|.+.|+.||..+|+.++.+|.+.|++++|.++|+.|. +.|+.|+..+|+.++.+|.+.|++
T Consensus 562 ~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~ 641 (857)
T PLN03077 562 TGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKL 641 (857)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCH
Confidence 8888888888888888888888888888888888888888888888888888887 577888888888888888888888
Q ss_pred hHHHHHHHHHhcc
Q 016027 371 ALAQKLCNVMSSV 383 (396)
Q Consensus 371 ~~A~~~~~~~~~~ 383 (396)
++|.+++++|.-.
T Consensus 642 ~eA~~~~~~m~~~ 654 (857)
T PLN03077 642 TEAYNFINKMPIT 654 (857)
T ss_pred HHHHHHHHHCCCC
Confidence 8888888887533
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1e-50 Score=383.63 Aligned_cols=362 Identities=18% Similarity=0.248 Sum_probs=297.4
Q ss_pred ChhhhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccc---------------
Q 016027 1 MIKVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMV--------------- 65 (396)
Q Consensus 1 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--------------- 65 (396)
|+..|.+.|+++.|.++|+++.+ |+ ..+|+.++.+|.+.|++++|+++|++|...+..
T Consensus 127 li~~~~~~g~~~~A~~~f~~m~~----~d---~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~ 199 (857)
T PLN03077 127 MLSMFVRFGELVHAWYVFGKMPE----RD---LFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGG 199 (857)
T ss_pred HHHHHHhCCChHHHHHHHhcCCC----CC---eeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCC
Confidence 35566777777777776665532 44 446777777777777777777777776654211
Q ss_pred ----------------cCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHH
Q 016027 66 ----------------KNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAE 129 (396)
Q Consensus 66 ----------------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 129 (396)
.++.++..+++.++.+|++.|++++|.++|++|.. ||..+||.++.+|.+.|++++|+
T Consensus 200 ~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~------~d~~s~n~li~~~~~~g~~~eAl 273 (857)
T PLN03077 200 IPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR------RDCISWNAMISGYFENGECLEGL 273 (857)
T ss_pred ccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC------CCcchhHHHHHHHHhCCCHHHHH
Confidence 13456777788888889999999999999988864 57888999999999999999999
Q ss_pred HHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 016027 130 RFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCE 209 (396)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 209 (396)
++|++|...|+.||..||+.++.+|++.|+.+.+.+++..|.+.|+.||..+|+.++.+|.+.|++++|.++|++|.
T Consensus 274 ~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~--- 350 (857)
T PLN03077 274 ELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME--- 350 (857)
T ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999884
Q ss_pred CCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHH
Q 016027 210 PGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHI 289 (396)
Q Consensus 210 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 289 (396)
.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+++.|.+++..+.+.|+.|+..+++.
T Consensus 351 -~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~ 429 (857)
T PLN03077 351 -TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANA 429 (857)
T ss_pred -CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 4688889999999999999999999999999989999999999999999999999999999999999998899999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 016027 290 LLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFKKRGM 369 (396)
Q Consensus 290 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 369 (396)
++.+|++.|++++|.++|++|.+ +|..+|+.++.+|++.|+.++|..+|++|.. ++.||..||..++.+|.+.|+
T Consensus 430 Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~ 504 (857)
T PLN03077 430 LIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGA 504 (857)
T ss_pred HHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhch
Confidence 99999999999999999988864 4777888888888888888888888888875 477888888777776666666
Q ss_pred chHHHHHHHHHhccc
Q 016027 370 TALAQKLCNVMSSVP 384 (396)
Q Consensus 370 ~~~A~~~~~~~~~~~ 384 (396)
.+.+.+++..+.+.+
T Consensus 505 l~~~~~i~~~~~~~g 519 (857)
T PLN03077 505 LMCGKEIHAHVLRTG 519 (857)
T ss_pred HHHhHHHHHHHHHhC
Confidence 666666666655443
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=4.6e-28 Score=234.30 Aligned_cols=359 Identities=13% Similarity=0.095 Sum_probs=179.5
Q ss_pred hhhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHH
Q 016027 3 KVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSL 82 (396)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 82 (396)
..+...|++++|...|.+++.. .|+ +..++..++..+.+.|++++|...++++.... |.+...+..++..+
T Consensus 507 ~~~~~~g~~~~A~~~~~~~~~~--~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~l~~~~ 577 (899)
T TIGR02917 507 RIDIQEGNPDDAIQRFEKVLTI--DPK--NLRAILALAGLYLRTGNEEEAVAWLEKAAELN-----PQEIEPALALAQYY 577 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CcC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----ccchhHHHHHHHHH
Confidence 3455666666666666666653 232 24456666666666666666666666665543 44444555555555
Q ss_pred HHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHH
Q 016027 83 CKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDR 162 (396)
Q Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 162 (396)
...|++++|.++++.+.... +.+...|..++.++...|++++|...|+++.+.. +.+...+..+..++...|++++
T Consensus 578 ~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 653 (899)
T TIGR02917 578 LGKGQLKKALAILNEAADAA---PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAK 653 (899)
T ss_pred HHCCCHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHH
Confidence 55555555555555554432 2244455555555555555555555555555442 1234445555555555555555
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 016027 163 AIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMIS 242 (396)
Q Consensus 163 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 242 (396)
|...++++.+.. +.+..++..++..+...|++++|.++++.+.+..+ .+...+..+...+...|++++|...|..+..
T Consensus 654 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 731 (899)
T TIGR02917 654 AITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKALK 731 (899)
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 555555555442 23344444455555555555555555555544432 2334444444445555555555555555444
Q ss_pred CCC--------------------------------CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 016027 243 RGF--------------------------------LPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHIL 290 (396)
Q Consensus 243 ~~~--------------------------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 290 (396)
.+. +.+...+..+...|...|++++|...|+++.+.. +.+..++..+
T Consensus 732 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l 810 (899)
T TIGR02917 732 RAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNL 810 (899)
T ss_pred hCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 321 2234444444444444445555555554444433 2234444444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCc
Q 016027 291 LKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFKKRGMT 370 (396)
Q Consensus 291 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 370 (396)
...+...|+ .+|+..++++....+. ++.++..+...+...|++++|.+.++++++.+. .+..++..+..++.+.|+.
T Consensus 811 ~~~~~~~~~-~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~g~~ 887 (899)
T TIGR02917 811 AWLYLELKD-PRALEYAEKALKLAPN-IPAILDTLGWLLVEKGEADRALPLLRKAVNIAP-EAAAIRYHLALALLATGRK 887 (899)
T ss_pred HHHHHhcCc-HHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CChHHHHHHHHHHHHcCCH
Confidence 444444444 4444444444443222 334444444455555555555555555554432 2444555555555555555
Q ss_pred hHHHHHHHHH
Q 016027 371 ALAQKLCNVM 380 (396)
Q Consensus 371 ~~A~~~~~~~ 380 (396)
++|.+++++|
T Consensus 888 ~~A~~~~~~~ 897 (899)
T TIGR02917 888 AEARKELDKL 897 (899)
T ss_pred HHHHHHHHHH
Confidence 5555555544
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.98 E-value=1.4e-27 Score=230.99 Aligned_cols=361 Identities=14% Similarity=0.121 Sum_probs=204.4
Q ss_pred hhhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHH
Q 016027 3 KVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSL 82 (396)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 82 (396)
..+.+.|++++|...+..+... .|+ +..++..++.++...|++++|.+.|+++.+.. |.+..++..++..+
T Consensus 439 ~~~~~~~~~~~A~~~~~~~~~~--~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-----~~~~~~~~~la~~~ 509 (899)
T TIGR02917 439 LSYLRSGQFDKALAAAKKLEKK--QPD--NASLHNLLGAIYLGKGDLAKAREAFEKALSIE-----PDFFPAAANLARID 509 (899)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh--CCC--CcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-----CCcHHHHHHHHHHH
Confidence 3455566666666666665543 222 24466667777777777777777777666643 55555666666666
Q ss_pred HHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHH
Q 016027 83 CKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDR 162 (396)
Q Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 162 (396)
...|++++|.+.|+++....|. +..++..+...+.+.|++++|...++++...+. .+...+..++..+...|++++
T Consensus 510 ~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~ 585 (899)
T TIGR02917 510 IQEGNPDDAIQRFEKVLTIDPK---NLRAILALAGLYLRTGNEEEAVAWLEKAAELNP-QEIEPALALAQYYLGKGQLKK 585 (899)
T ss_pred HHCCCHHHHHHHHHHHHHhCcC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHCCCHHH
Confidence 6666666666666666654332 455566666666666666666666666655432 244455556666666666666
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 016027 163 AIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMIS 242 (396)
Q Consensus 163 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 242 (396)
|..+++.+.+.. +.+..++..+..++...|++++|...|+++.+..+ .+...+..+..++...|++++|..+++.+.+
T Consensus 586 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 663 (899)
T TIGR02917 586 ALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP-DSALALLLLADAYAVMKNYAKAITSLKRALE 663 (899)
T ss_pred HHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 666666665542 34555566666666666666666666666655433 2444555566666666666666666666655
Q ss_pred CCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhH
Q 016027 243 RGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTS 322 (396)
Q Consensus 243 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 322 (396)
.. +.+..++..++..+...|++++|.++++.+.+.+ +.+...+..+...+...|++++|...++.+...+ |+..++
T Consensus 664 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~ 739 (899)
T TIGR02917 664 LK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNA 739 (899)
T ss_pred cC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHH
Confidence 43 2244555555555555555555555555555543 2244445555555555555555555555555442 222444
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcc
Q 016027 323 TMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFKKRGMTALAQKLCNVMSSV 383 (396)
Q Consensus 323 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 383 (396)
..++.++.+.|++++|.+.++++.+.. +.+...+..+...|...|++++|...|+++...
T Consensus 740 ~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 799 (899)
T TIGR02917 740 IKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK 799 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh
Confidence 445555555555555555555555432 334445555555555555555555555554443
No 9
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.96 E-value=9.1e-27 Score=195.37 Aligned_cols=362 Identities=19% Similarity=0.128 Sum_probs=311.9
Q ss_pred hhhhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHH
Q 016027 2 IKVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDS 81 (396)
Q Consensus 2 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 81 (396)
.+.+-..|++.+|+.+|+.+++. .|++ .++|..++.++...|+.+.|.+.|..+++.+ |...-+...++..
T Consensus 123 aN~~kerg~~~~al~~y~~aiel--~p~f--ida~inla~al~~~~~~~~a~~~~~~alqln-----P~l~ca~s~lgnL 193 (966)
T KOG4626|consen 123 ANILKERGQLQDALALYRAAIEL--KPKF--IDAYINLAAALVTQGDLELAVQCFFEALQLN-----PDLYCARSDLGNL 193 (966)
T ss_pred HHHHHHhchHHHHHHHHHHHHhc--Cchh--hHHHhhHHHHHHhcCCCcccHHHHHHHHhcC-----cchhhhhcchhHH
Confidence 46677899999999999999985 6663 5699999999999999999999999999985 6556667778888
Q ss_pred HHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHH
Q 016027 82 LCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVD 161 (396)
Q Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 161 (396)
+...|++++|...|.++.+..|. =...|..|...+-..|+...|+..|++..+..+. -...|..|...|...+.++
T Consensus 194 lka~Grl~ea~~cYlkAi~~qp~---fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~-f~dAYiNLGnV~ke~~~~d 269 (966)
T KOG4626|consen 194 LKAEGRLEEAKACYLKAIETQPC---FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPN-FLDAYINLGNVYKEARIFD 269 (966)
T ss_pred HHhhcccchhHHHHHHHHhhCCc---eeeeehhcchHHhhcchHHHHHHHHHHhhcCCCc-chHHHhhHHHHHHHHhcch
Confidence 88899999999999999987654 3567999999999999999999999999886422 4678999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 016027 162 RAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMI 241 (396)
Q Consensus 162 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 241 (396)
+|...|.+..... +.....+..+...|...|..+.|+..|++.++..+. -...|+.|..++...|+..+|.+.+.+..
T Consensus 270 ~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL 347 (966)
T KOG4626|consen 270 RAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKAL 347 (966)
T ss_pred HHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHH
Confidence 9999999988773 445677888888999999999999999999996553 46899999999999999999999999999
Q ss_pred HCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhh
Q 016027 242 SRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDT 321 (396)
Q Consensus 242 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 321 (396)
.... ....+.+.|...+...|.+++|..+|....+-... -...++.|...|.+.|++++|+..++++++..+. -...
T Consensus 348 ~l~p-~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~-fAda 424 (966)
T KOG4626|consen 348 RLCP-NHADAMNNLGNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPT-FADA 424 (966)
T ss_pred HhCC-ccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCch-HHHH
Confidence 8743 36778999999999999999999999998875322 3457888999999999999999999999876322 3578
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCchHHHHHHHHHhcc
Q 016027 322 STMLIHLLCRMYKFDEASAEFEDMIRRGLVPH-YLTFKRLNDEFKKRGMTALAQKLCNVMSSV 383 (396)
Q Consensus 322 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 383 (396)
++.+...|-..|+.+.|...+.+.+..+ |. ....+.|...|..+|+..+|+.-++...+.
T Consensus 425 ~~NmGnt~ke~g~v~~A~q~y~rAI~~n--Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl 485 (966)
T KOG4626|consen 425 LSNMGNTYKEMGDVSAAIQCYTRAIQIN--PTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL 485 (966)
T ss_pred HHhcchHHHHhhhHHHHHHHHHHHHhcC--cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc
Confidence 9999999999999999999999998854 54 467889999999999999999999996554
No 10
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.96 E-value=4.7e-24 Score=195.22 Aligned_cols=369 Identities=14% Similarity=0.031 Sum_probs=291.5
Q ss_pred hhhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHH
Q 016027 3 KVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSL 82 (396)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 82 (396)
+.+.+.|++++|+..|.+++.. .|+ ...|..++.+|...|++++|+..++++++.+ |.+..++..++.+|
T Consensus 135 ~~~~~~~~~~~Ai~~y~~al~~--~p~---~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-----p~~~~a~~~~a~a~ 204 (615)
T TIGR00990 135 NKAYRNKDFNKAIKLYSKAIEC--KPD---PVYYSNRAACHNALGDWEKVVEDTTAALELD-----PDYSKALNRRANAY 204 (615)
T ss_pred HHHHHcCCHHHHHHHHHHHHhc--CCc---hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-----CCCHHHHHHHHHHH
Confidence 4678899999999999999985 455 5589999999999999999999999999985 78889999999999
Q ss_pred HHcCChHHHHHHHHHHhhccC------------------------------CCCCChHHHHHH-----------------
Q 016027 83 CKQGRVKAASEYFHKRKELDQ------------------------------SWAPTVRVYNIL----------------- 115 (396)
Q Consensus 83 ~~~~~~~~A~~~~~~~~~~~~------------------------------~~~~~~~~~~~l----------------- 115 (396)
...|++++|+..|..+...++ ...|........
T Consensus 205 ~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (615)
T TIGR00990 205 DGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSN 284 (615)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccc
Confidence 999999999877655433211 100110000000
Q ss_pred ----------HHHH------HhcCChhHHHHHHHHHHhCC-CCC-ChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC
Q 016027 116 ----------LNGW------FRSKNVKDAERFWLEMRKEN-VTP-NVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEP 177 (396)
Q Consensus 116 ----------~~~~------~~~~~~~~a~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 177 (396)
+... ...+++++|.+.|++....+ ..| ....+..+...+...|++++|+..+++.++.. +.
T Consensus 285 ~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~ 363 (615)
T TIGR00990 285 ELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PR 363 (615)
T ss_pred ccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CC
Confidence 0000 11257889999999998764 223 45678888889999999999999999999873 33
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 016027 178 NAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFR 257 (396)
Q Consensus 178 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 257 (396)
....|..+..++...|++++|...|+++++..+ .+..++..+...+...|++++|...|++..+... .+...+..+..
T Consensus 364 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P-~~~~~~~~la~ 441 (615)
T TIGR00990 364 VTQSYIKRASMNLELGDPDKAEEDFDKALKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP-DFIFSHIQLGV 441 (615)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc-cCHHHHHHHHH
Confidence 466888889999999999999999999988755 3678899999999999999999999999998753 36777888899
Q ss_pred HHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh------hHHHHHHHHHh
Q 016027 258 YFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLD------TSTMLIHLLCR 331 (396)
Q Consensus 258 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~ 331 (396)
++.+.|++++|+..|++..+.. +.+...++.+..++...|++++|...|++........+.. .++.....+..
T Consensus 442 ~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~ 520 (615)
T TIGR00990 442 TQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQW 520 (615)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHH
Confidence 9999999999999999998764 3367888999999999999999999999998864432211 11222233445
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhccchh
Q 016027 332 MYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFKKRGMTALAQKLCNVMSSVPRS 386 (396)
Q Consensus 332 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 386 (396)
.|++++|..++++.+... +.+...+..+...+.+.|++++|++.|++..+...+
T Consensus 521 ~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 521 KQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAELART 574 (615)
T ss_pred hhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhcc
Confidence 799999999999998864 334567889999999999999999999997665443
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.96 E-value=5.4e-24 Score=194.15 Aligned_cols=329 Identities=12% Similarity=0.047 Sum_probs=268.9
Q ss_pred hhhhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHH
Q 016027 2 IKVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDS 81 (396)
Q Consensus 2 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 81 (396)
+..+.+.|++++|+.++...+.. .|+ +..++..++.+....|++++|+..|+++.... |.++.++..++..
T Consensus 49 ~~~~~~~g~~~~A~~l~~~~l~~--~p~--~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-----P~~~~a~~~la~~ 119 (656)
T PRK15174 49 AIACLRKDETDVGLTLLSDRVLT--AKN--GRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-----VCQPEDVLLVASV 119 (656)
T ss_pred HHHHHhcCCcchhHHHhHHHHHh--CCC--chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-----CCChHHHHHHHHH
Confidence 34567889999999999999886 444 25588888899999999999999999999975 8888899999999
Q ss_pred HHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHH
Q 016027 82 LCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVD 161 (396)
Q Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 161 (396)
+...|++++|...++++...+|+ +...+..++..+...|++++|...++.+...... +...+..+ ..+...|+++
T Consensus 120 l~~~g~~~~Ai~~l~~Al~l~P~---~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~ 194 (656)
T PRK15174 120 LLKSKQYATVADLAEQAWLAFSG---NSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLP 194 (656)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHH
Confidence 99999999999999999987554 6778888999999999999999999988766433 33344333 3477889999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHH----HHHHH
Q 016027 162 RAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEG----ASKIL 237 (396)
Q Consensus 162 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~ 237 (396)
+|...++.+.+....++......+..++...|++++|+..++++.+..+. +...+..+...+...|++++ |...+
T Consensus 195 eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~ 273 (656)
T PRK15174 195 EDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHW 273 (656)
T ss_pred HHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHH
Confidence 99999999887643344445556677888999999999999999987653 67788889999999999885 89999
Q ss_pred HHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 016027 238 KMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDI 317 (396)
Q Consensus 238 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 317 (396)
+...+..+ .+...+..+...+...|++++|...++++...... +...+..+..++...|++++|...++++...++.
T Consensus 274 ~~Al~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~- 350 (656)
T PRK15174 274 RHALQFNS-DNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREKGV- 350 (656)
T ss_pred HHHHhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-
Confidence 99988753 36778889999999999999999999999887533 5667777888999999999999999999876433
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 016027 318 DLDTSTMLIHLLCRMYKFDEASAEFEDMIRR 348 (396)
Q Consensus 318 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 348 (396)
+...+..+..++...|++++|...|++..+.
T Consensus 351 ~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 351 TSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3344455677888999999999999998875
No 12
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.95 E-value=1.5e-24 Score=189.05 Aligned_cols=296 Identities=16% Similarity=0.108 Sum_probs=173.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC---hhHHHHHHHHH
Q 016027 78 LLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPN---VVTYGTLVEGY 154 (396)
Q Consensus 78 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~ 154 (396)
.+..+...|++++|...|+++...+|. +..++..+...+...|++++|..+++.+...+..++ ...+..++..|
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~ 117 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKVDPE---TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDY 117 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcCcc---cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 344455556666666666666654332 445566666666666666666666666655421111 13455566666
Q ss_pred HccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc----hhhHHHHHHHHHhcCCh
Q 016027 155 CRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPT----MVTYTSLVKGYCKAGDL 230 (396)
Q Consensus 155 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~ 230 (396)
...|++++|..+|+++.+.. +.+..++..++.++.+.|++++|.+.++.+.+.++.+. ...+..+...+.+.|++
T Consensus 118 ~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 196 (389)
T PRK11788 118 LKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDL 196 (389)
T ss_pred HHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCH
Confidence 66666666666666666542 33455566666666666666666666666655443321 11334455556666666
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 016027 231 EGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEM 310 (396)
Q Consensus 231 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 310 (396)
++|...++++.+.. +.+...+..+...+...|++++|.++++++.+.+......++..++.+|...|++++|...++++
T Consensus 197 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 275 (389)
T PRK11788 197 DAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRA 275 (389)
T ss_pred HHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66666666666543 22344555666666666777777777666665432222345566666666777777777777766
Q ss_pred HHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH---cCCchHHHHHHHHHhc
Q 016027 311 KCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFKK---RGMTALAQKLCNVMSS 382 (396)
Q Consensus 311 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~ 382 (396)
.+.. |+...+..++..+.+.|++++|..+++++.+. .|+..++..++..+.. .|+.+++..+++++.+
T Consensus 276 ~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 276 LEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred HHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 6553 34444566666667777777777777666654 4666666666655543 3466667777766654
No 13
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.95 E-value=1.4e-24 Score=189.21 Aligned_cols=309 Identities=15% Similarity=0.139 Sum_probs=258.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCC--ChHHH
Q 016027 35 TFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAP--TVRVY 112 (396)
Q Consensus 35 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~ 112 (396)
.....+..+...|++++|+..|+++...+ |.+..++..++..+...|++++|..+++.+.... ...+ ....+
T Consensus 37 ~~y~~g~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~~~ 110 (389)
T PRK11788 37 RDYFKGLNFLLNEQPDKAIDLFIEMLKVD-----PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRP-DLTREQRLLAL 110 (389)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcC-----cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCC-CCCHHHHHHHH
Confidence 45556777889999999999999999975 7778899999999999999999999999988742 1111 13567
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHH
Q 016027 113 NILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPN----AIVYNTVIDG 188 (396)
Q Consensus 113 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~ 188 (396)
..++..+.+.|++++|..+|+++.+.. +++..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..+...
T Consensus 111 ~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 189 (389)
T PRK11788 111 QELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQ 189 (389)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 889999999999999999999998763 34778999999999999999999999999988753322 1245567778
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHH
Q 016027 189 LVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDA 268 (396)
Q Consensus 189 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 268 (396)
+...|++++|...++++.+..+ .+...+..+...+.+.|++++|.+.++++.+.+......+++.++.+|...|++++|
T Consensus 190 ~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A 268 (389)
T PRK11788 190 ALARGDLDAARALLKKALAADP-QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEG 268 (389)
T ss_pred HHhCCCHHHHHHHHHHHHhHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHH
Confidence 8899999999999999988654 356678889999999999999999999999864333356788899999999999999
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh---cCChhHHHHHHHHH
Q 016027 269 MNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCR---MYKFDEASAEFEDM 345 (396)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~ 345 (396)
...++++.+.. |+...+..++..+.+.|++++|..+++++.+. .|+...++.++..+.. .|+.+++..+++++
T Consensus 269 ~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~ 344 (389)
T PRK11788 269 LEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDL 344 (389)
T ss_pred HHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHH
Confidence 99999998864 56666788999999999999999999999876 5788888888877764 56899999999999
Q ss_pred HHCCCCCCHH
Q 016027 346 IRRGLVPHYL 355 (396)
Q Consensus 346 ~~~~~~p~~~ 355 (396)
.+.++.|++.
T Consensus 345 ~~~~~~~~p~ 354 (389)
T PRK11788 345 VGEQLKRKPR 354 (389)
T ss_pred HHHHHhCCCC
Confidence 9877776654
No 14
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.95 E-value=1.5e-23 Score=191.33 Aligned_cols=361 Identities=12% Similarity=0.095 Sum_probs=292.8
Q ss_pred hhhccCchhHHHHHHHHhCCCC-CCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHH
Q 016027 5 LAKAKEFDSAWCLLLDKIGGHE-VPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLC 83 (396)
Q Consensus 5 ~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 83 (396)
+.++.+++.---+|...-+... ..+ +.......+..+.+.|++++|..+++.+.... |.++.++..++.+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-----p~~~~~l~~l~~~~l 87 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAG--NEQNIILFAIACLRKDETDVGLTLLSDRVLTA-----KNGRDLLRRWVISPL 87 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcc--cccCHHHHHHHHHhcCCcchhHHHhHHHHHhC-----CCchhHHHHHhhhHh
Confidence 4566666665444443332211 111 23456678888999999999999999998874 888888999999999
Q ss_pred HcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHH
Q 016027 84 KQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRA 163 (396)
Q Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 163 (396)
..|++++|...|+++...+|+ +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|
T Consensus 88 ~~g~~~~A~~~l~~~l~~~P~---~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA 163 (656)
T PRK15174 88 ASSQPDAVLQVVNKLLAVNVC---QPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQA 163 (656)
T ss_pred hcCCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHH
Confidence 999999999999999998765 67789999999999999999999999999864 33677888999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 016027 164 IRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISR 243 (396)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 243 (396)
...++.+.... +.+...+..+ ..+...|++++|...++.+.+..+.++...+..+..++...|++++|...+..+.+.
T Consensus 164 ~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~ 241 (656)
T PRK15174 164 ISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR 241 (656)
T ss_pred HHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 99999887764 2333344333 347889999999999999888654444555566678889999999999999999987
Q ss_pred CCCCChhhHHHHHHHHhccCCHHH----HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh
Q 016027 244 GFLPSPTTYNYFFRYFSKFGKVED----AMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDL 319 (396)
Q Consensus 244 ~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 319 (396)
.. .+...+..+...+...|++++ |...++++.+..+ .+...+..+...+...|++++|...++++....+. +.
T Consensus 242 ~p-~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~ 318 (656)
T PRK15174 242 GL-DGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNS-DNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LP 318 (656)
T ss_pred CC-CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CH
Confidence 53 367888889999999999986 8999999988753 36778889999999999999999999999987644 67
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCchHHHHHHHHHhcc
Q 016027 320 DTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHY-LTFKRLNDEFKKRGMTALAQKLCNVMSSV 383 (396)
Q Consensus 320 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 383 (396)
..+..+..++...|++++|...++++...+ |+. ..+..+..++...|+.++|...|++..+.
T Consensus 319 ~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 319 YVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 788889999999999999999999998753 443 33444567889999999999999996554
No 15
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.94 E-value=1.1e-22 Score=198.07 Aligned_cols=358 Identities=16% Similarity=0.106 Sum_probs=219.6
Q ss_pred hhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCch--h--------
Q 016027 4 VLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGA--S-------- 73 (396)
Q Consensus 4 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--~-------- 73 (396)
.+...|++++|+..|+++++. .|+ +..++..++.++.+.|++++|+..|+++.+.. |.+. .
T Consensus 278 ~~~~~g~~~~A~~~l~~aL~~--~P~--~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~-----p~~~~~~~~~~ll~~ 348 (1157)
T PRK11447 278 AAVDSGQGGKAIPELQQAVRA--NPK--DSEALGALGQAYSQQGDRARAVAQFEKALALD-----PHSSNRDKWESLLKV 348 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCccchhHHHHHHHh
Confidence 456789999999999999985 454 37799999999999999999999999998864 2221 1
Q ss_pred ----HHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHH
Q 016027 74 ----LFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGT 149 (396)
Q Consensus 74 ----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 149 (396)
........+.+.|++++|++.|+++...+|. +...+..+...+...|++++|++.|+++.+.... +...+..
T Consensus 349 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~---~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~ 424 (1157)
T PRK11447 349 NRYWLLIQQGDAALKANNLAQAERLYQQARQVDNT---DSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRG 424 (1157)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHH
Confidence 1123356778899999999999999987654 6678888999999999999999999999876422 4445544
Q ss_pred HHHHH------------------------------------------HccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 016027 150 LVEGY------------------------------------------CRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVID 187 (396)
Q Consensus 150 l~~~~------------------------------------------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 187 (396)
+...+ ...|++++|++.+++.++.. +-+...+..+..
T Consensus 425 L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~ 503 (1157)
T PRK11447 425 LANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQ 503 (1157)
T ss_pred HHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 44444 23445555555555544442 223334444445
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh---------hhHHHHHHH
Q 016027 188 GLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSP---------TTYNYFFRY 258 (396)
Q Consensus 188 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------~~~~~l~~~ 258 (396)
.|.+.|++++|...++++.+..+. +...+..+...+...+++++|...++.+......++. ..+......
T Consensus 504 ~~~~~G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~ 582 (1157)
T PRK11447 504 DLRQAGQRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANR 582 (1157)
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHH
Confidence 555555555555555555443221 2222222223333344444444443332211100000 001112233
Q ss_pred HhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHH
Q 016027 259 FSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEA 338 (396)
Q Consensus 259 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 338 (396)
+...|+.++|..+++. .+.+...+..+...+.+.|++++|+..|+++....+. +...+..++..+...|++++|
T Consensus 583 l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA 656 (1157)
T PRK11447 583 LRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAA 656 (1157)
T ss_pred HHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHH
Confidence 4444455555544441 1234445566666777777777777777777766433 566777777777777777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcc
Q 016027 339 SAEFEDMIRRGLVPHYLTFKRLNDEFKKRGMTALAQKLCNVMSSV 383 (396)
Q Consensus 339 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 383 (396)
.+.++.+.+.. +.+..++..+..++...|++++|.++++++...
T Consensus 657 ~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 657 RAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred HHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 77777666532 223445556666677777777777777776553
No 16
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.94 E-value=6.2e-22 Score=192.77 Aligned_cols=361 Identities=11% Similarity=0.054 Sum_probs=284.6
Q ss_pred hhhhhhccCchhHHHHHHHHhCCCCCCCCCChhHH------------HHHHHHHHHcCCHHHHHHHHHHHhhcccccCCC
Q 016027 2 IKVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTF------------VILIRRYARAGMVEAAIWTFEFANNLDMVKNFD 69 (396)
Q Consensus 2 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~------------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 69 (396)
...+.+.|++++|+..|+++++.. |+......| ...+..+.+.|++++|+..|+++.... |
T Consensus 310 g~~~~~~g~~~eA~~~l~~Al~~~--p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-----P 382 (1157)
T PRK11447 310 GQAYSQQGDRARAVAQFEKALALD--PHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-----N 382 (1157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC--CCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----C
Confidence 457889999999999999999854 332111112 234667889999999999999999985 7
Q ss_pred CchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHH-----------------------------------
Q 016027 70 SGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNI----------------------------------- 114 (396)
Q Consensus 70 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~----------------------------------- 114 (396)
.+..++..++.++...|++++|++.|+++.+.+|. +...+..
T Consensus 383 ~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~---~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l 459 (1157)
T PRK11447 383 TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG---NTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSL 459 (1157)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 78888999999999999999999999999987654 2333322
Q ss_pred -------HHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 016027 115 -------LLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVID 187 (396)
Q Consensus 115 -------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 187 (396)
+...+...|++++|++.|++.++..+. +...+..+...+.+.|++++|...++++.+.. +.+...+..+..
T Consensus 460 ~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al 537 (1157)
T PRK11447 460 QNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGL 537 (1157)
T ss_pred hhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHH
Confidence 233455679999999999999887543 66778889999999999999999999998763 445556666666
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCch---------hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 016027 188 GLVEAGRFEEVSGMMERFLVCEPGPTM---------VTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRY 258 (396)
Q Consensus 188 ~~~~~~~~~~a~~~~~~~~~~~~~~~~---------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 258 (396)
.+...+++++|+..++.+......+.. ..+..+...+...|+.++|..+++. .+.+...+..+...
T Consensus 538 ~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~ 612 (1157)
T PRK11447 538 YLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADW 612 (1157)
T ss_pred HHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHH
Confidence 778899999999999886543222221 1233456778899999999999872 24566778889999
Q ss_pred HhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHH
Q 016027 259 FSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEA 338 (396)
Q Consensus 259 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 338 (396)
+...|++++|+..|+++.+..+ .+...+..++..+...|++++|++.++.+....+. +...+..+..++...|++++|
T Consensus 613 ~~~~g~~~~A~~~y~~al~~~P-~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~-~~~~~~~la~~~~~~g~~~eA 690 (1157)
T PRK11447 613 AQQRGDYAAARAAYQRVLTREP-GNADARLGLIEVDIAQGDLAAARAQLAKLPATAND-SLNTQRRVALAWAALGDTAAA 690 (1157)
T ss_pred HHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCC-ChHHHHHHHHHHHhCCCHHHH
Confidence 9999999999999999998753 36788899999999999999999999998876432 566777888999999999999
Q ss_pred HHHHHHHHHCCC--CC---CHHHHHHHHHHHHHcCCchHHHHHHHHHh
Q 016027 339 SAEFEDMIRRGL--VP---HYLTFKRLNDEFKKRGMTALAQKLCNVMS 381 (396)
Q Consensus 339 ~~~~~~~~~~~~--~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 381 (396)
.+++++++.... .| +...+..+...+...|+.++|+..|++..
T Consensus 691 ~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 691 QRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred HHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999987432 22 23456667888999999999999999964
No 17
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.94 E-value=1.6e-21 Score=181.73 Aligned_cols=372 Identities=11% Similarity=-0.004 Sum_probs=270.9
Q ss_pred hhhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHH
Q 016027 3 KVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSL 82 (396)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 82 (396)
.+....|+.++|++++.+.... .|. +..++..++..+...|++++|.+.|+++.... |.++.++..++..+
T Consensus 23 ~ia~~~g~~~~A~~~~~~~~~~--~~~--~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-----P~~~~a~~~la~~l 93 (765)
T PRK10049 23 QIALWAGQDAEVITVYNRYRVH--MQL--PARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-----PQNDDYQRGLILTL 93 (765)
T ss_pred HHHHHcCCHHHHHHHHHHHHhh--CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHH
Confidence 4566778888888888887752 222 25568888888888888888888888888764 67777788888888
Q ss_pred HHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHH
Q 016027 83 CKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDR 162 (396)
Q Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 162 (396)
...|++++|+..++++....|. +.. +..+..++...|++++|+..++++.+..+. +...+..+..++...+..+.
T Consensus 94 ~~~g~~~eA~~~l~~~l~~~P~---~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~ 168 (765)
T PRK10049 94 ADAGQYDEALVKAKQLVSGAPD---KAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAP 168 (765)
T ss_pred HHCCCHHHHHHHHHHHHHhCCC---CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHH
Confidence 8888888888888888876443 555 777888888888888888888888876433 45555555655555555444
Q ss_pred H----------------------------------------------HHHHHHHHHc-CCCCCHH-HHH----HHHHHHH
Q 016027 163 A----------------------------------------------IRLVKEMRKE-GIEPNAI-VYN----TVIDGLV 190 (396)
Q Consensus 163 a----------------------------------------------~~~~~~~~~~-~~~~~~~-~~~----~l~~~~~ 190 (396)
| ++.++.+.+. ...|+.. .+. ..+.++.
T Consensus 169 Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll 248 (765)
T PRK10049 169 ALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALL 248 (765)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHH
Confidence 4 4444444432 1122211 111 1133456
Q ss_pred HcCCHHHHHHHHHHHHhcCCC-CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---ChhhHHHHHHHHhccCCHH
Q 016027 191 EAGRFEEVSGMMERFLVCEPG-PTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLP---SPTTYNYFFRYFSKFGKVE 266 (396)
Q Consensus 191 ~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~ 266 (396)
..|++++|+..|+++.+.+.. |+ .....+..+|...|++++|+..|+.+.+..... .......+..++...|+++
T Consensus 249 ~~g~~~eA~~~~~~ll~~~~~~P~-~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~ 327 (765)
T PRK10049 249 ARDRYKDVISEYQRLKAEGQIIPP-WAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYP 327 (765)
T ss_pred HhhhHHHHHHHHHHhhccCCCCCH-HHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHH
Confidence 779999999999999887543 32 222335778999999999999999988753221 1234566677888999999
Q ss_pred HHHHHHHHHHHCCC-----------CCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 016027 267 DAMNLYRKMIESGY-----------TPD---RLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRM 332 (396)
Q Consensus 267 ~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 332 (396)
+|..+++.+..... .|+ ...+..+...+...|++++|+.+++++....+. +...+..++..+...
T Consensus 328 eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~-n~~l~~~lA~l~~~~ 406 (765)
T PRK10049 328 GALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPG-NQGLRIDYASVLQAR 406 (765)
T ss_pred HHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhc
Confidence 99999999887531 122 124556777888999999999999999887544 788899999999999
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhccchhhhhhh
Q 016027 333 YKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFKKRGMTALAQKLCNVMSSVPRSMELLD 391 (396)
Q Consensus 333 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 391 (396)
|++++|++.+++.+... +.+...+...+..+.+.|++++|..+++++.+..+....+.
T Consensus 407 g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~ 464 (765)
T PRK10049 407 GWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQ 464 (765)
T ss_pred CCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 99999999999998864 33466677777788999999999999999877655554433
No 18
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.93 E-value=4.2e-23 Score=173.64 Aligned_cols=337 Identities=16% Similarity=0.131 Sum_probs=278.0
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHH
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVY 112 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 112 (396)
.++|..++..+-..|++++|+..++.+.+.. |.....|..++.++...|+.+.|...|..+.+.+|. .....
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel~-----p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~---l~ca~ 187 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIELK-----PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPD---LYCAR 187 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-----chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcc---hhhhh
Confidence 4678888888989999999999999988875 778888999999999999999999999888877543 22233
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 016027 113 NILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEA 192 (396)
Q Consensus 113 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 192 (396)
..+...+...|+..+|...|.+.++.... -...|..|.-.+-..|+...|++.|++..+.+ +.-...|..|...|...
T Consensus 188 s~lgnLlka~Grl~ea~~cYlkAi~~qp~-fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~ 265 (966)
T KOG4626|consen 188 SDLGNLLKAEGRLEEAKACYLKAIETQPC-FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEA 265 (966)
T ss_pred cchhHHHHhhcccchhHHHHHHHHhhCCc-eeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHH
Confidence 44555556678899999998888876322 45678888888999999999999999998774 33466888999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHH
Q 016027 193 GRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLY 272 (396)
Q Consensus 193 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 272 (396)
+.++.|+..|.+.....+ ....++..+...|...|..+.|+..+++..+..+. -+..|+.+..++-..|++.+|.+.|
T Consensus 266 ~~~d~Avs~Y~rAl~lrp-n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cY 343 (966)
T KOG4626|consen 266 RIFDRAVSCYLRALNLRP-NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCY 343 (966)
T ss_pred hcchHHHHHHHHHHhcCC-cchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHH
Confidence 999999999999887544 35677888888999999999999999999987433 5678999999999999999999999
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 016027 273 RKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVP 352 (396)
Q Consensus 273 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p 352 (396)
.+.+..... .....+.|...+...|.+++|..+|....+..+. -...++.|...|-..|++++|+..+++.++ +.|
T Consensus 344 nkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P 419 (966)
T KOG4626|consen 344 NKALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKP 419 (966)
T ss_pred HHHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCc
Confidence 999887432 5667888999999999999999999999876433 456788999999999999999999999987 456
Q ss_pred C-HHHHHHHHHHHHHcCCchHHHHHHHHHhccch
Q 016027 353 H-YLTFKRLNDEFKKRGMTALAQKLCNVMSSVPR 385 (396)
Q Consensus 353 ~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 385 (396)
+ ...++.+...|-..|+.+.|+..+.+.....+
T Consensus 420 ~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nP 453 (966)
T KOG4626|consen 420 TFADALSNMGNTYKEMGDVSAAIQCYTRAIQINP 453 (966)
T ss_pred hHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCc
Confidence 6 46788999999999999999999999766544
No 19
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.93 E-value=4e-21 Score=176.00 Aligned_cols=339 Identities=16% Similarity=0.041 Sum_probs=265.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHH
Q 016027 35 TFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNI 114 (396)
Q Consensus 35 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 114 (396)
.+...+..+.+.|++++|+..|++++.. .|++..|..+..+|.+.|++++|++.++.+.+.+|. +...|..
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~------~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~---~~~a~~~ 199 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC------KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD---YSKALNR 199 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC---CHHHHHH
Confidence 4668899999999999999999999987 456788999999999999999999999999987654 6788999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCC----------------------------C-CChhHHHHHHH-------------
Q 016027 115 LLNGWFRSKNVKDAERFWLEMRKENV----------------------------T-PNVVTYGTLVE------------- 152 (396)
Q Consensus 115 l~~~~~~~~~~~~a~~~~~~~~~~~~----------------------------~-~~~~~~~~l~~------------- 152 (396)
+..++...|++++|+..|......+. . ++...+..+..
T Consensus 200 ~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (615)
T TIGR00990 200 RANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAG 279 (615)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhh
Confidence 99999999999999876654432210 0 00000000000
Q ss_pred -----------------HH------HccCCHHHHHHHHHHHHHcC-C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 016027 153 -----------------GY------CRLRRVDRAIRLVKEMRKEG-I-EPNAIVYNTVIDGLVEAGRFEEVSGMMERFLV 207 (396)
Q Consensus 153 -----------------~~------~~~~~~~~a~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 207 (396)
.. ...+++++|.+.|+...+.+ . +.....+..+...+...|++++|+..+++.++
T Consensus 280 ~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~ 359 (615)
T TIGR00990 280 LEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIE 359 (615)
T ss_pred hhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 00 11257889999999998764 2 33456678888889999999999999999998
Q ss_pred cCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhH
Q 016027 208 CEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTY 287 (396)
Q Consensus 208 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 287 (396)
..+. ....|..+...+...|++++|...|+.+.+.. +.+..++..+...+...|++++|...|++..+... .+...+
T Consensus 360 l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P-~~~~~~ 436 (615)
T TIGR00990 360 LDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP-DFIFSH 436 (615)
T ss_pred cCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc-cCHHHH
Confidence 6543 46688889999999999999999999998875 33678899999999999999999999999988753 356778
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH------HHHHHHH
Q 016027 288 HILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHY------LTFKRLN 361 (396)
Q Consensus 288 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~------~~~~~l~ 361 (396)
..+..++.+.|++++|+..+++..+..+. ++..++.+..++...|++++|.+.|++.+......+. ..++...
T Consensus 437 ~~la~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~ 515 (615)
T TIGR00990 437 IQLGVTQYKEGSIASSMATFRRCKKNFPE-APDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKAL 515 (615)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHH
Confidence 88889999999999999999999876433 6888999999999999999999999999875321111 1122222
Q ss_pred HHHHHcCCchHHHHHHHHHhccchh
Q 016027 362 DEFKKRGMTALAQKLCNVMSSVPRS 386 (396)
Q Consensus 362 ~~~~~~g~~~~A~~~~~~~~~~~~~ 386 (396)
..+...|++++|.+.+++.....+.
T Consensus 516 ~~~~~~~~~~eA~~~~~kAl~l~p~ 540 (615)
T TIGR00990 516 ALFQWKQDFIEAENLCEKALIIDPE 540 (615)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 3344579999999999996655433
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.90 E-value=4.6e-19 Score=165.46 Aligned_cols=345 Identities=12% Similarity=0.053 Sum_probs=261.3
Q ss_pred hhhhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHH
Q 016027 2 IKVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDS 81 (396)
Q Consensus 2 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 81 (396)
...+...|++++|..+|+++++. .|+ +..++..++.++...|++++|+..++++.... |.+.. +..++.+
T Consensus 56 A~~~~~~g~~~~A~~~~~~al~~--~P~--~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-----P~~~~-~~~la~~ 125 (765)
T PRK10049 56 AVAYRNLKQWQNSLTLWQKALSL--EPQ--NDDYQRGLILTLADAGQYDEALVKAKQLVSGA-----PDKAN-LLALAYV 125 (765)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCCHH-HHHHHHH
Confidence 35678899999999999999885 454 36688899999999999999999999999874 77788 9999999
Q ss_pred HHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHH--------------------------------
Q 016027 82 LCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAE-------------------------------- 129 (396)
Q Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-------------------------------- 129 (396)
+...|++++|+..++++.+..|+ +...+..+...+...+..++|+
T Consensus 126 l~~~g~~~~Al~~l~~al~~~P~---~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~ 202 (765)
T PRK10049 126 YKRAGRHWDELRAMTQALPRAPQ---TQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPT 202 (765)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccc
Confidence 99999999999999999987655 5666666666666555555444
Q ss_pred --------------HHHHHHHhC-CCCCChh-HH----HHHHHHHHccCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHH
Q 016027 130 --------------RFWLEMRKE-NVTPNVV-TY----GTLVEGYCRLRRVDRAIRLVKEMRKEGIE-PNAIVYNTVIDG 188 (396)
Q Consensus 130 --------------~~~~~~~~~-~~~~~~~-~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~ 188 (396)
..++.+.+. ...|+.. .+ ...+..+...|++++|+..|+.+.+.+.+ |+. ....+..+
T Consensus 203 ~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~ 281 (765)
T PRK10049 203 RSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASA 281 (765)
T ss_pred cChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHH
Confidence 444444432 1122221 11 11133446779999999999999987532 222 22335778
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCC---chhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC-----------CCC---hhh
Q 016027 189 LVEAGRFEEVSGMMERFLVCEPGP---TMVTYTSLVKGYCKAGDLEGASKILKMMISRGF-----------LPS---PTT 251 (396)
Q Consensus 189 ~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~---~~~ 251 (396)
+...|++++|+..|+++.+..+.. .......+..++...|++++|...++.+..... .|+ ...
T Consensus 282 yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a 361 (765)
T PRK10049 282 YLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQG 361 (765)
T ss_pred HHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHH
Confidence 999999999999999988754322 134566677788999999999999999987632 122 234
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 016027 252 YNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCR 331 (396)
Q Consensus 252 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 331 (396)
+..+...+...|++++|+++++++.... +.+...+..++..+...|++++|++.++++....+. +...+...+..+..
T Consensus 362 ~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd-~~~l~~~~a~~al~ 439 (765)
T PRK10049 362 QSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPR-NINLEVEQAWTALD 439 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHH
Confidence 5667788899999999999999998874 346788889999999999999999999999987543 56777788888999
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 016027 332 MYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEF 364 (396)
Q Consensus 332 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 364 (396)
.|++++|..+++++++. .|+......+-..+
T Consensus 440 ~~~~~~A~~~~~~ll~~--~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 440 LQEWRQMDVLTDDVVAR--EPQDPGVQRLARAR 470 (765)
T ss_pred hCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 99999999999999985 45554444443333
No 21
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.90 E-value=1.6e-18 Score=159.19 Aligned_cols=364 Identities=13% Similarity=0.068 Sum_probs=211.7
Q ss_pred hhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHH
Q 016027 4 VLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLC 83 (396)
Q Consensus 4 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 83 (396)
...+.|+++.|+..|+++++. .|+ +......++..+...|+.++|+..++++.... +........++..+.
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~--~P~--~~~av~dll~l~~~~G~~~~A~~~~eka~~p~-----n~~~~~llalA~ly~ 113 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKA--GPL--QSGQVDDWLQIAGWAGRDQEVIDVYERYQSSM-----NISSRGLASAARAYR 113 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhh--Ccc--chhhHHHHHHHHHHcCCcHHHHHHHHHhccCC-----CCCHHHHHHHHHHHH
Confidence 345778888888888888874 344 11123377777778888888888888877321 333333444466777
Q ss_pred HcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHH
Q 016027 84 KQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRA 163 (396)
Q Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 163 (396)
..|++++|+++|+++.+.+|. +...+..++..+...++.++|++.++++... .|+...+..++..+...++..+|
T Consensus 114 ~~gdyd~Aiely~kaL~~dP~---n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~A 188 (822)
T PRK14574 114 NEKRWDQALALWQSSLKKDPT---NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDA 188 (822)
T ss_pred HcCCHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHH
Confidence 788888888888888877655 4566667777778888888888888887765 34455554444444445566568
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH------------------------------------------
Q 016027 164 IRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGM------------------------------------------ 201 (396)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~------------------------------------------ 201 (396)
++.++++.+.. +.+...+..+..++.+.|-...|.++
T Consensus 189 L~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~ 267 (822)
T PRK14574 189 LQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIA 267 (822)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHH
Confidence 88888877763 33444444444444444433322222
Q ss_pred ------HHHHHhc-CCCCch-h----hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHH
Q 016027 202 ------MERFLVC-EPGPTM-V----TYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAM 269 (396)
Q Consensus 202 ------~~~~~~~-~~~~~~-~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 269 (396)
++.+... +..|.. . ...-.+-++...+++.++++.++.+...+.+....+-..+..+|...+++++|+
T Consensus 268 d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~ 347 (822)
T PRK14574 268 DKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAA 347 (822)
T ss_pred HHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHH
Confidence 2222211 000111 1 111223355556666666666666666654434446666666666666666666
Q ss_pred HHHHHHHHCCC-----CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----------CCCh---hhHHHHHHHHH
Q 016027 270 NLYRKMIESGY-----TPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGC-----------DIDL---DTSTMLIHLLC 330 (396)
Q Consensus 270 ~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~~---~~~~~l~~~~~ 330 (396)
.+|+.+..... .++......|.-++...+++++|..+++.+.+..+ .|++ ..+..++..+.
T Consensus 348 ~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~ 427 (822)
T PRK14574 348 PILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLV 427 (822)
T ss_pred HHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHH
Confidence 66666654321 11222234556666666666666666666665211 1121 12233455556
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcc
Q 016027 331 RMYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFKKRGMTALAQKLCNVMSSV 383 (396)
Q Consensus 331 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 383 (396)
..|++.+|++.++++.... +-|......+...+...|++.+|...++.....
T Consensus 428 ~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l 479 (822)
T PRK14574 428 ALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESL 479 (822)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 6666666666666665543 345556666666666666666666666555444
No 22
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.90 E-value=1.4e-18 Score=159.52 Aligned_cols=371 Identities=13% Similarity=0.025 Sum_probs=281.2
Q ss_pred hhhhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHH
Q 016027 2 IKVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDS 81 (396)
Q Consensus 2 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 81 (396)
+..+...|+.++|+..+++.+. |...+......++..+...|++++|+++|+++.+.. |.++.++..++..
T Consensus 75 l~l~~~~G~~~~A~~~~eka~~----p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~d-----P~n~~~l~gLa~~ 145 (822)
T PRK14574 75 LQIAGWAGRDQEVIDVYERYQS----SMNISSRGLASAARAYRNEKRWDQALALWQSSLKKD-----PTNPDLISGMIMT 145 (822)
T ss_pred HHHHHHcCCcHHHHHHHHHhcc----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CCCHHHHHHHHHH
Confidence 4567788999999999999983 332234556666889999999999999999999985 8888889899999
Q ss_pred HHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHH
Q 016027 82 LCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVD 161 (396)
Q Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 161 (396)
+...++.++|++.++++...+ |+...+..++..+...++..+|++.++++.+..+. +...+..+..+..+.|-..
T Consensus 146 y~~~~q~~eAl~~l~~l~~~d----p~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~-n~e~~~~~~~~l~~~~~~~ 220 (822)
T PRK14574 146 QADAGRGGVVLKQATELAERD----PTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPT-SEEVLKNHLEILQRNRIVE 220 (822)
T ss_pred HhhcCCHHHHHHHHHHhcccC----cchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcH
Confidence 999999999999999998764 34555555555555567776799999999987533 5556555555555544332
Q ss_pred H------------------------------------------------HHHHHHHHHHc-CCCCCH-HHH----HHHHH
Q 016027 162 R------------------------------------------------AIRLVKEMRKE-GIEPNA-IVY----NTVID 187 (396)
Q Consensus 162 ~------------------------------------------------a~~~~~~~~~~-~~~~~~-~~~----~~l~~ 187 (396)
. |+.-++.+... +..|.. ..| .-.+-
T Consensus 221 ~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~ 300 (822)
T PRK14574 221 PALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLG 300 (822)
T ss_pred HHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHH
Confidence 2 33333333331 111221 111 23345
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC-----CCChhhHHHHHHHHhcc
Q 016027 188 GLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGF-----LPSPTTYNYFFRYFSKF 262 (396)
Q Consensus 188 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~ 262 (396)
++...|++.++++.|+.+...+.+....+-..+..+|...+++++|..++..+..... +++......|.-++...
T Consensus 301 aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~ 380 (822)
T PRK14574 301 ALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNES 380 (822)
T ss_pred HHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhc
Confidence 6788899999999999999887665667888999999999999999999999977531 22344457888999999
Q ss_pred CCHHHHHHHHHHHHHCCC-------------CCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 016027 263 GKVEDAMNLYRKMIESGY-------------TPDR-LTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHL 328 (396)
Q Consensus 263 ~~~~~a~~~~~~~~~~~~-------------~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 328 (396)
+++++|..+++++.+..+ .||- ..+..++..+...|++.+|++.++++....+. |......+...
T Consensus 381 e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~-n~~l~~~~A~v 459 (822)
T PRK14574 381 EQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPA-NQNLRIALASI 459 (822)
T ss_pred ccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 999999999999987421 1222 23345667788999999999999999887655 99999999999
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhccchhhh
Q 016027 329 LCRMYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFKKRGMTALAQKLCNVMSSVPRSME 388 (396)
Q Consensus 329 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 388 (396)
+...|.+.+|...++...... +-+..+....+.++...|++++|..+.+++.+..+...
T Consensus 460 ~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~ 518 (822)
T PRK14574 460 YLARDLPRKAEQELKAVESLA-PRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDI 518 (822)
T ss_pred HHhcCCHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCch
Confidence 999999999999997776653 34566777888899999999999999998766544443
No 23
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.89 E-value=3.6e-19 Score=157.39 Aligned_cols=373 Identities=13% Similarity=0.065 Sum_probs=263.3
Q ss_pred hhhhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHH
Q 016027 2 IKVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDS 81 (396)
Q Consensus 2 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 81 (396)
.++|...|++++|...|.+.++. .|+.+ .-.+..+++.+...|+++.|...|+++.+.. |.+..+...|+..
T Consensus 314 gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~-~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-----p~~~etm~iLG~L 385 (1018)
T KOG2002|consen 314 GRSYHAQGDFEKAFKYYMESLKA--DNDNF-VLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-----PNNYETMKILGCL 385 (1018)
T ss_pred HHHHHhhccHHHHHHHHHHHHcc--CCCCc-cccccchhHHHHHhchHHHHHHHHHHHHHhC-----cchHHHHHHHHhH
Confidence 57889999999999999999886 34432 4578899999999999999999999999974 8888888888888
Q ss_pred HHHcC----ChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHH----hCCCCCChhHHHHHHHH
Q 016027 82 LCKQG----RVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMR----KENVTPNVVTYGTLVEG 153 (396)
Q Consensus 82 ~~~~~----~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~ 153 (396)
|...+ ..+.|..++.+..... +.|...|-.+...+-..+-+. ++..|.... ..+-.+.+...|.+...
T Consensus 386 ya~~~~~~~~~d~a~~~l~K~~~~~---~~d~~a~l~laql~e~~d~~~-sL~~~~~A~d~L~~~~~~ip~E~LNNvasl 461 (1018)
T KOG2002|consen 386 YAHSAKKQEKRDKASNVLGKVLEQT---PVDSEAWLELAQLLEQTDPWA-SLDAYGNALDILESKGKQIPPEVLNNVASL 461 (1018)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHhcc---cccHHHHHHHHHHHHhcChHH-HHHHHHHHHHHHHHcCCCCCHHHHHhHHHH
Confidence 88775 5677777777777653 347777777777665544433 366665443 34445677788888888
Q ss_pred HHccCCHHHHHHHHHHHHHc---CCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--------------
Q 016027 154 YCRLRRVDRAIRLVKEMRKE---GIE------PNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEP-------------- 210 (396)
Q Consensus 154 ~~~~~~~~~a~~~~~~~~~~---~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------------- 210 (396)
+...|++.+|...|...... ... ++..+-..+..++-..++++.|.+.|..+....+
T Consensus 462 hf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~ 541 (1018)
T KOG2002|consen 462 HFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMAR 541 (1018)
T ss_pred HHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHH
Confidence 88888888888888777654 111 2222233444555555566666666666554322
Q ss_pred -------------------CCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCChhhHHHHHHHHh----------
Q 016027 211 -------------------GPTMVTYTSLVKGYCKAGDLEGASKILKMMISRG-FLPSPTTYNYFFRYFS---------- 260 (396)
Q Consensus 211 -------------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~---------- 260 (396)
..++..++.+...+.+..++..|.+-|..+.+.- ..+|+.+...|...|.
T Consensus 542 ~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ 621 (1018)
T KOG2002|consen 542 DKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNP 621 (1018)
T ss_pred hccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccCh
Confidence 1233444445555555555555555555444331 1234444444444433
Q ss_pred --ccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHH
Q 016027 261 --KFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEA 338 (396)
Q Consensus 261 --~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 338 (396)
..+..++|+++|.++++..+ -|...-+-+.-+++..|++.+|..+|.++.+.... ...+|-.+.++|..+|++..|
T Consensus 622 ek~kk~~~KAlq~y~kvL~~dp-kN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~-~~dv~lNlah~~~e~~qy~~A 699 (1018)
T KOG2002|consen 622 EKEKKHQEKALQLYGKVLRNDP-KNMYAANGIGIVLAEKGRFSEARDIFSQVREATSD-FEDVWLNLAHCYVEQGQYRLA 699 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHhcCc-chhhhccchhhhhhhccCchHHHHHHHHHHHHHhh-CCceeeeHHHHHHHHHHHHHH
Confidence 22346788889988888753 37777788888899999999999999999987443 667888999999999999999
Q ss_pred HHHHHHHHH-CCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhccchhhh
Q 016027 339 SAEFEDMIR-RGLVPHYLTFKRLNDEFKKRGMTALAQKLCNVMSSVPRSME 388 (396)
Q Consensus 339 ~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 388 (396)
+++|+...+ .....+......|.+++.+.|.+.+|.+.+.......+..+
T Consensus 700 IqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~ 750 (1018)
T KOG2002|consen 700 IQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNT 750 (1018)
T ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccc
Confidence 999998876 33455677888999999999999999999988666544433
No 24
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.88 E-value=5.6e-18 Score=148.92 Aligned_cols=366 Identities=13% Similarity=0.134 Sum_probs=285.4
Q ss_pred hhhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHH
Q 016027 3 KVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSL 82 (396)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 82 (396)
+.+.-+|++++|..++.++++. .|. ...+|.+|+.+|-+.|+.+++...+-.+-..+ |.+...|..+....
T Consensus 147 N~lfarg~~eeA~~i~~EvIkq--dp~--~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-----p~d~e~W~~ladls 217 (895)
T KOG2076|consen 147 NNLFARGDLEEAEEILMEVIKQ--DPR--NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-----PKDYELWKRLADLS 217 (895)
T ss_pred HHHHHhCCHHHHHHHHHHHHHh--Ccc--chhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-----CCChHHHHHHHHHH
Confidence 4455569999999999999996 344 36799999999999999999999999998875 88889999999999
Q ss_pred HHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHH----HHHHHHHccC
Q 016027 83 CKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYG----TLVEGYCRLR 158 (396)
Q Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~ 158 (396)
.+.|.+++|.-.|.++.+.+|. +...+-.-...|-+.|+...|.+.|.++.+..++.|..-+. ..+..+...+
T Consensus 218 ~~~~~i~qA~~cy~rAI~~~p~---n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~ 294 (895)
T KOG2076|consen 218 EQLGNINQARYCYSRAIQANPS---NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHN 294 (895)
T ss_pred HhcccHHHHHHHHHHHHhcCCc---chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999997654 66666777888999999999999999999875433433333 3455677778
Q ss_pred CHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--------------------------
Q 016027 159 RVDRAIRLVKEMRKEG-IEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPG-------------------------- 211 (396)
Q Consensus 159 ~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-------------------------- 211 (396)
+-+.|++.++.....+ -..+...++.++..+.+...++.|............+
T Consensus 295 ~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~ 374 (895)
T KOG2076|consen 295 ERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKEL 374 (895)
T ss_pred HHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCC
Confidence 8899999998887732 2456667888889999999999998887776651111
Q ss_pred -CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHH
Q 016027 212 -PTMVTYTSLVKGYCKAGDLEGASKILKMMISRG--FLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYH 288 (396)
Q Consensus 212 -~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 288 (396)
++..+ ..++-++......+....+...+.... +..+...|.-+..++...|++.+|+.+|..+......-+...|.
T Consensus 375 s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~ 453 (895)
T KOG2076|consen 375 SYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWY 453 (895)
T ss_pred Cccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhH
Confidence 12222 122334444455555555555555554 44456788999999999999999999999998875555677899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH--------CCCCCCHHHHHHH
Q 016027 289 ILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIR--------RGLVPHYLTFKRL 360 (396)
Q Consensus 289 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~~~p~~~~~~~l 360 (396)
.+.++|...|..++|.+.|+.++...+. +...-..|...+.+.|+.++|.+.++.+.. .+..|+.......
T Consensus 454 ~~a~c~~~l~e~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r 532 (895)
T KOG2076|consen 454 KLARCYMELGEYEEAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHR 532 (895)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHH
Confidence 9999999999999999999999987543 677778888999999999999999998653 2345666666677
Q ss_pred HHHHHHcCCchHHHHHHHHHhc
Q 016027 361 NDEFKKRGMTALAQKLCNVMSS 382 (396)
Q Consensus 361 ~~~~~~~g~~~~A~~~~~~~~~ 382 (396)
...+.+.|+.++=+.....|..
T Consensus 533 ~d~l~~~gk~E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 533 CDILFQVGKREEFINTASTLVD 554 (895)
T ss_pred HHHHHHhhhHHHHHHHHHHHHH
Confidence 7788899999886665555543
No 25
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.86 E-value=1.4e-16 Score=149.41 Aligned_cols=361 Identities=12% Similarity=0.076 Sum_probs=254.2
Q ss_pred hhhhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHH
Q 016027 2 IKVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDS 81 (396)
Q Consensus 2 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 81 (396)
+..+.++|+++-|+++ .+. .|. ......-.......+...++.+.++.+.+.. |.+......+...
T Consensus 320 ~~~~~~~~~~~~~~~~-~~~-----~~~---~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~-----~~~~~~l~q~~~~ 385 (987)
T PRK09782 320 LPVLLKEGQYDAAQKL-LAT-----LPA---NEMLEERYAVSVATRNKAEALRLARLLYQQE-----PANLTRLDQLTWQ 385 (987)
T ss_pred HHHHHhccHHHHHHHH-hcC-----CCc---chHHHHHHhhccccCchhHHHHHHHHHHhcC-----CCCHHHHHHHHHH
Confidence 4567778888866554 221 232 1122111112223467777777777777753 6677778888888
Q ss_pred HHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCC---hhHHHHH----------------------HHHHH
Q 016027 82 LCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKN---VKDAERF----------------------WLEMR 136 (396)
Q Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~----------------------~~~~~ 136 (396)
..+.|+.++|.++|+......+...++......++..|.+.+. ..++..+ ++...
T Consensus 386 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (987)
T PRK09782 386 LMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIV 465 (987)
T ss_pred HHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHH
Confidence 8888999999999988877433333445555577777776655 2333222 22222
Q ss_pred hC-CC-CC--ChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 016027 137 KE-NV-TP--NVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGP 212 (396)
Q Consensus 137 ~~-~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 212 (396)
.. +. ++ +...|..+..++.. +++++|+..+.+.... .|+......+...+...|++++|...|+++... .|
T Consensus 466 ~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p 540 (987)
T PRK09782 466 RLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DM 540 (987)
T ss_pred HhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CC
Confidence 11 11 23 56677777777776 7888899988877766 455544444455567899999999999987664 23
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 016027 213 TMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLK 292 (396)
Q Consensus 213 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 292 (396)
+...+..+..++.+.|++++|...+....+.+ +.+...+..+.......|++++|...+++..+.. |+...+..+..
T Consensus 541 ~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~ 617 (987)
T PRK09782 541 SNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARAT 617 (987)
T ss_pred CcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHH
Confidence 44456677788888999999999999988764 2233334444444556699999999999988764 56778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCchH
Q 016027 293 ILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFKKRGMTAL 372 (396)
Q Consensus 293 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 372 (396)
++.+.|+.++|...++++....+. +...++.+..++...|++++|+..+++.++.. +-+...+..+..++...|++++
T Consensus 618 ~l~~lG~~deA~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~e 695 (987)
T PRK09782 618 IYRQRHNVPAAVSDLRAALELEPN-NSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAA 695 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 999999999999999999888654 77888888889999999999999999998854 3466778888889999999999
Q ss_pred HHHHHHHHhccchh
Q 016027 373 AQKLCNVMSSVPRS 386 (396)
Q Consensus 373 A~~~~~~~~~~~~~ 386 (396)
|+..+++.....+.
T Consensus 696 A~~~l~~Al~l~P~ 709 (987)
T PRK09782 696 TQHYARLVIDDIDN 709 (987)
T ss_pred HHHHHHHHHhcCCC
Confidence 99999997665443
No 26
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.85 E-value=2e-16 Score=148.41 Aligned_cols=358 Identities=12% Similarity=-0.009 Sum_probs=262.7
Q ss_pred ccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCC
Q 016027 8 AKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGR 87 (396)
Q Consensus 8 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 87 (396)
.+...+|.+.++.+.+. .|. +...+..+.-...+.|+.++|.++|+....... +...+..+...++..|.+.+.
T Consensus 355 ~~~~~~~~~~~~~~y~~--~~~--~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~l~~~l~~~~~~~~~ 428 (987)
T PRK09782 355 TRNKAEALRLARLLYQQ--EPA--NLTRLDQLTWQLMQNGQSREAADLLLQRYPFQG--DARLSQTLMARLASLLESHPY 428 (987)
T ss_pred cCchhHHHHHHHHHHhc--CCC--CHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCc--ccccCHHHHHHHHHHHHhCCc
Confidence 35566666677777774 232 255777788888899999999999998887421 112244455577777777765
Q ss_pred ---hHHHHHH----------------------HHHHhhccCCCCC--ChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 016027 88 ---VKAASEY----------------------FHKRKELDQSWAP--TVRVYNILLNGWFRSKNVKDAERFWLEMRKENV 140 (396)
Q Consensus 88 ---~~~A~~~----------------------~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 140 (396)
..++..+ ++.....-+..++ +...|..+..++.. +++.+|...+.+.....
T Consensus 429 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~- 506 (987)
T PRK09782 429 LATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ- 506 (987)
T ss_pred ccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC-
Confidence 2333222 2222222222234 67788888888876 88889999888877653
Q ss_pred CCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHH
Q 016027 141 TPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSL 220 (396)
Q Consensus 141 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 220 (396)
|+......+...+...|++++|...++++... +|+...+..+..++.+.|++++|...+++..+..+. ....+..+
T Consensus 507 -Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~L 582 (987)
T PRK09782 507 -PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DNALYWWL 582 (987)
T ss_pred -CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHH
Confidence 55544445556667899999999999987665 455555667778889999999999999999886542 33333344
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH
Q 016027 221 VKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKL 300 (396)
Q Consensus 221 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 300 (396)
.......|++++|...+++..+. .|+...+..+..++.+.|++++|+..+++.....+ .+...+..+..++...|+.
T Consensus 583 a~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~P-d~~~a~~nLG~aL~~~G~~ 659 (987)
T PRK09782 583 HAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELEP-NNSNYQAALGYALWDSGDI 659 (987)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCH
Confidence 44555669999999999999986 45678889999999999999999999999988753 3667788888899999999
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCchHHHHHHHH
Q 016027 301 DLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPH-YLTFKRLNDEFKKRGMTALAQKLCNV 379 (396)
Q Consensus 301 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 379 (396)
++|+..++++.+..+. +...+..+..++...|++++|...+++.++.. |+ ..+.........+..+++.|.+-+++
T Consensus 660 eeAi~~l~~AL~l~P~-~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~--P~~a~i~~~~g~~~~~~~~~~~a~~~~~r 736 (987)
T PRK09782 660 AQSREMLERAHKGLPD-DPALIRQLAYVNQRLDDMAATQHYARLVIDDI--DNQALITPLTPEQNQQRFNFRRLHEEVGR 736 (987)
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCchhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999987654 78889999999999999999999999998753 44 34455566666777778888877776
Q ss_pred Hhcc
Q 016027 380 MSSV 383 (396)
Q Consensus 380 ~~~~ 383 (396)
.-..
T Consensus 737 ~~~~ 740 (987)
T PRK09782 737 RWTF 740 (987)
T ss_pred Hhhc
Confidence 5443
No 27
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.83 E-value=8.7e-17 Score=142.60 Aligned_cols=369 Identities=14% Similarity=0.101 Sum_probs=253.5
Q ss_pred hhhhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCc-hhHHHHHHH
Q 016027 2 IKVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSG-ASLFEILLD 80 (396)
Q Consensus 2 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~l~~ 80 (396)
.+.|.-.|++..+..+...++....... .-...|+.++++|-..|++++|..+|.+..+.. +.+ ...+.-|++
T Consensus 277 An~fyfK~dy~~v~~la~~ai~~t~~~~-~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~-----~d~~~l~~~GlgQ 350 (1018)
T KOG2002|consen 277 ANHFYFKKDYERVWHLAEHAIKNTENKS-IKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD-----NDNFVLPLVGLGQ 350 (1018)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC-----CCCccccccchhH
Confidence 4556677899999998888887542111 113568899999999999999999999888864 222 334566888
Q ss_pred HHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcC----ChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHc
Q 016027 81 SLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSK----NVKDAERFWLEMRKENVTPNVVTYGTLVEGYCR 156 (396)
Q Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 156 (396)
.+.+.|+++.|...|++..+..|+ +..+...|...|...+ ..+.|..++.+..+.- +.|...|..+...+-.
T Consensus 351 m~i~~~dle~s~~~fEkv~k~~p~---~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~ 426 (1018)
T KOG2002|consen 351 MYIKRGDLEESKFCFEKVLKQLPN---NYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQ 426 (1018)
T ss_pred HHHHhchHHHHHHHHHHHHHhCcc---hHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHh
Confidence 999999999999999998886554 6667777777776664 4567777777766653 3477888888877765
Q ss_pred cCCHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCCch------hhHHHHHHH
Q 016027 157 LRRVDRAIRLVKEMR----KEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVC---EPGPTM------VTYTSLVKG 223 (396)
Q Consensus 157 ~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~------~~~~~l~~~ 223 (396)
..-+ .++.+|..+. ..+..+.+...|.+...+...|+++.|...|+..... ...++. .+--.+..+
T Consensus 427 ~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl 505 (1018)
T KOG2002|consen 427 TDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARL 505 (1018)
T ss_pred cChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHH
Confidence 4443 3366665544 4455688899999999999999999999999988765 122222 122334555
Q ss_pred HHhcCChHHHHHHHHHHHHCCCC---------------------------------CChhhHHHHHHHHhccCCHHHHHH
Q 016027 224 YCKAGDLEGASKILKMMISRGFL---------------------------------PSPTTYNYFFRYFSKFGKVEDAMN 270 (396)
Q Consensus 224 ~~~~~~~~~a~~~~~~~~~~~~~---------------------------------~~~~~~~~l~~~~~~~~~~~~a~~ 270 (396)
.-..++.+.|.+.+..+.+..+. .++..++.+...+.....+..|.+
T Consensus 506 ~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k 585 (1018)
T KOG2002|consen 506 LEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKK 585 (1018)
T ss_pred HHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhccccc
Confidence 55566667777777666654211 122333333333333344444444
Q ss_pred HHHHHHHC-CCCCChhhHHHHHHHHHh------------cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhH
Q 016027 271 LYRKMIES-GYTPDRLTYHILLKILCK------------EDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDE 337 (396)
Q Consensus 271 ~~~~~~~~-~~~~~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 337 (396)
-|..+.+. ...+|..+...|...|.+ .+..++|+++|.++++..+. |...-|-+.-+++..|++.+
T Consensus 586 ~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~ 664 (1018)
T KOG2002|consen 586 KFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYAANGIGIVLAEKGRFSE 664 (1018)
T ss_pred HHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhhccchhhhhhhccCchH
Confidence 33333322 112344444455554432 23467899999999887655 88888889999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcc
Q 016027 338 ASAEFEDMIRRGLVPHYLTFKRLNDEFKKRGMTALAQKLCNVMSSV 383 (396)
Q Consensus 338 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 383 (396)
|..+|.+..+... ....+|..+..+|..+|++..|+++|+...+.
T Consensus 665 A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkk 709 (1018)
T KOG2002|consen 665 ARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKK 709 (1018)
T ss_pred HHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988543 34458889999999999999999999995443
No 28
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.82 E-value=9.7e-16 Score=135.09 Aligned_cols=337 Identities=12% Similarity=0.042 Sum_probs=265.2
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHH
Q 016027 34 DTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYN 113 (396)
Q Consensus 34 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 113 (396)
......+..+...|++++|..++.++++.+ |.++..|..|+..|-..|+.+++...+-.+..++|+ |...|.
T Consensus 140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkqd-----p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~---d~e~W~ 211 (895)
T KOG2076|consen 140 RQLLGEANNLFARGDLEEAEEILMEVIKQD-----PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK---DYELWK 211 (895)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-----ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC---ChHHHH
Confidence 344455556666799999999999999986 888999999999999999999999999998888766 778999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHH----HHHHHH
Q 016027 114 ILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYN----TVIDGL 189 (396)
Q Consensus 114 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~ 189 (396)
.+.....+.|.+++|.-+|.+.++.. +++...+---...|-+.|+...|...|.++.....+.|..-+. ..++.+
T Consensus 212 ~ladls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~ 290 (895)
T KOG2076|consen 212 RLADLSEQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYF 290 (895)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999985 3466666677888999999999999999999884333333333 345667
Q ss_pred HHcCCHHHHHHHHHHHHhcC-CCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC-----------------------
Q 016027 190 VEAGRFEEVSGMMERFLVCE-PGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGF----------------------- 245 (396)
Q Consensus 190 ~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----------------------- 245 (396)
...++.+.|.+.++.....+ -..+...++.++..+.+...++.|............
T Consensus 291 ~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~ 370 (895)
T KOG2076|consen 291 ITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEV 370 (895)
T ss_pred HHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccC
Confidence 77888899999988887632 234566788899999999999999988887776211
Q ss_pred ----CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh
Q 016027 246 ----LPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESG--YTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDL 319 (396)
Q Consensus 246 ----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 319 (396)
.++..+ ..+.-++.+....+....+...+...+ +.-+...|.-+..++...|++.+|+.++..+......-+.
T Consensus 371 ~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~ 449 (895)
T KOG2076|consen 371 GKELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNA 449 (895)
T ss_pred CCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccch
Confidence 122222 122233444555555555555555555 3345677889999999999999999999999987555578
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHh
Q 016027 320 DTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFKKRGMTALAQKLCNVMS 381 (396)
Q Consensus 320 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 381 (396)
.+|-.+..+|...|.+++|.+.|+..+... +.+...-..|...+.+.|+.++|.+.++.+.
T Consensus 450 ~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 450 FVWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred hhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 899999999999999999999999999853 3344556677788999999999999999876
No 29
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.81 E-value=2.6e-17 Score=134.44 Aligned_cols=367 Identities=13% Similarity=0.089 Sum_probs=215.2
Q ss_pred hhhhhccCchhHHHHHHHHhCCCCCCCC-CChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHH
Q 016027 3 KVLAKAKEFDSAWCLLLDKIGGHEVPDF-VSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDS 81 (396)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 81 (396)
+.+.+.++|.+|++.|+-++..-+..+. .-...++.++..+.+.|+++.|+..|+.+... .|+..+-..|+-+
T Consensus 245 ni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~------~pn~~a~~nl~i~ 318 (840)
T KOG2003|consen 245 NIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE------APNFIAALNLIIC 318 (840)
T ss_pred ceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh------CccHHhhhhhhhh
Confidence 3456677777777777666664221110 00234555566677777777777777777765 4444444455556
Q ss_pred HHHcCChHHHHHHHHHHhhccCCCCCChHH--------HHHHHHHHHhcC-----------ChhHHHHHHHHHHhCCCCC
Q 016027 82 LCKQGRVKAASEYFHKRKELDQSWAPTVRV--------YNILLNGWFRSK-----------NVKDAERFWLEMRKENVTP 142 (396)
Q Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~--------~~~l~~~~~~~~-----------~~~~a~~~~~~~~~~~~~~ 142 (396)
+..-|+-++..+.|.++.... + .||..- -..|+.-..+.. +-++++-.--+++.--+.|
T Consensus 319 ~f~i~d~ekmkeaf~kli~ip-~-~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~ 396 (840)
T KOG2003|consen 319 AFAIGDAEKMKEAFQKLIDIP-G-EIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAP 396 (840)
T ss_pred heecCcHHHHHHHHHHHhcCC-C-CCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhcccccc
Confidence 666677777777777777652 2 232221 111221111111 1112221111222111222
Q ss_pred Chh-----HH----------------HHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHH---------------
Q 016027 143 NVV-----TY----------------GTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVI--------------- 186 (396)
Q Consensus 143 ~~~-----~~----------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~--------------- 186 (396)
+-. +. ..-...+.+.|+++.|+++++-+.+..-+.-...-+.+-
T Consensus 397 ~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aq 476 (840)
T KOG2003|consen 397 DFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQ 476 (840)
T ss_pred chhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHH
Confidence 210 00 001223567788888888877665543211111111110
Q ss_pred ---------------------HHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 016027 187 ---------------------DGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGF 245 (396)
Q Consensus 187 ---------------------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 245 (396)
+.....|++++|.+.|++.+..... .......+...+-..|+.++|++.|-.+... +
T Consensus 477 qyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndas-c~ealfniglt~e~~~~ldeald~f~klh~i-l 554 (840)
T KOG2003|consen 477 QYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDAS-CTEALFNIGLTAEALGNLDEALDCFLKLHAI-L 554 (840)
T ss_pred HHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchH-HHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-H
Confidence 1112246778888888887654332 2223333445667778888888888776654 2
Q ss_pred CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 016027 246 LPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTML 325 (396)
Q Consensus 246 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 325 (396)
..+..+...+...|....++.+|++++.+.... ++-|+.....|...|-+.|+-..|.+.+-...+. ++-+..+...|
T Consensus 555 ~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl 632 (840)
T KOG2003|consen 555 LNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWL 632 (840)
T ss_pred HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHH
Confidence 336667777778888888888888888776554 4557778888888888888888887776655543 34477777777
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HHcCCchHHHHHHHHHhcc
Q 016027 326 IHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEF-KKRGMTALAQKLCNVMSSV 383 (396)
Q Consensus 326 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~ 383 (396)
..-|....-+++++..|++..- ++|+..-|..++..| .+.|++++|..+++.+.+.
T Consensus 633 ~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 633 AAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred HHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 7777777788888888877643 478888887776544 5678888888888776543
No 30
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.81 E-value=5.3e-16 Score=134.09 Aligned_cols=286 Identities=12% Similarity=0.039 Sum_probs=209.7
Q ss_pred HHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHH-HHHHHHcCChHHHHHHHHHHhhccCCCCCChHHH--HHHHHHH
Q 016027 43 YARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEIL-LDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVY--NILLNGW 119 (396)
Q Consensus 43 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~--~~l~~~~ 119 (396)
....|++++|.+.+.+..+. .+++.++..+ .....+.|+++.|..++.++.+.+ |+.... ......+
T Consensus 94 a~~eGd~~~A~k~l~~~~~~------~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~----~~~~~~~~l~~a~l~ 163 (398)
T PRK10747 94 KLAEGDYQQVEKLMTRNADH------AEQPVVNYLLAAEAAQQRGDEARANQHLERAAELA----DNDQLPVEITRVRIQ 163 (398)
T ss_pred HHhCCCHHHHHHHHHHHHhc------ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC----CcchHHHHHHHHHHH
Confidence 34468999999888876554 3334444444 444478899999999999987753 333222 2336678
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHHc
Q 016027 120 FRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNA-------IVYNTVIDGLVEA 192 (396)
Q Consensus 120 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~ 192 (396)
...|++++|...++++.+..+. +......+...|.+.|++++|.+++..+.+.+..++. .+|..++......
T Consensus 164 l~~g~~~~Al~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~ 242 (398)
T PRK10747 164 LARNENHAARHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMAD 242 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 8889999999999998887644 6778888889999999999999999999887643222 1333444444445
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHH
Q 016027 193 GRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLY 272 (396)
Q Consensus 193 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 272 (396)
.+.+...++++.+... .+.++.....+...+...|+.++|.+++++..+. +|+.... ++.+....++++++.+..
T Consensus 243 ~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~ 317 (398)
T PRK10747 243 QGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVL 317 (398)
T ss_pred cCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHH
Confidence 5566677777766443 2346778888888999999999999999888874 4454322 233444568889999999
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 016027 273 RKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIR 347 (396)
Q Consensus 273 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 347 (396)
+...+..+ -|+.....+...+.+.+++++|.+.|+.+.+. .|+...+..+..++.+.|+.++|..++++.+.
T Consensus 318 e~~lk~~P-~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 318 RQQIKQHG-DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 88887743 36667788888999999999999999999876 57888888899999999999999999988765
No 31
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.81 E-value=9.4e-16 Score=133.30 Aligned_cols=291 Identities=10% Similarity=-0.018 Sum_probs=199.6
Q ss_pred HHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHH
Q 016027 82 LCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVD 161 (396)
Q Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 161 (396)
....|+++.|.+.+.+..+..+. ....+-.....+.+.|+++.|.+.+.+..+....+...........+...|+++
T Consensus 94 a~~~g~~~~A~~~l~~~~~~~~~---~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~ 170 (409)
T TIGR00540 94 KLAEGDYAKAEKLIAKNADHAAE---PVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELH 170 (409)
T ss_pred HHhCCCHHHHHHHHHHHhhcCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHH
Confidence 34578888888888877664221 233444556777788888888888888776532222233444577778888888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHH-HHHHHH---HhcCChHHHHHHH
Q 016027 162 RAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYT-SLVKGY---CKAGDLEGASKIL 237 (396)
Q Consensus 162 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~---~~~~~~~~a~~~~ 237 (396)
.|...++.+.+.. +-++.....+...+...|++++|.+.+..+.+.+.. +...+. .-..++ ...+..+.+.+.+
T Consensus 171 ~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L 248 (409)
T TIGR00540 171 AARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGL 248 (409)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 8888888888875 456677778888888888888888888888887653 322221 111111 2233333334455
Q ss_pred HHHHHCCC---CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhh--H-HHHHHHHHhcCCHHHHHHHHHHHH
Q 016027 238 KMMISRGF---LPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLT--Y-HILLKILCKEDKLDLAIQVSKEMK 311 (396)
Q Consensus 238 ~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~-~~l~~~~~~~~~~~~a~~~~~~~~ 311 (396)
..+.+... +.++..+..+...+...|+.++|.+++++..+.. ||... + ..........++.+.+.+.++...
T Consensus 249 ~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~l 326 (409)
T TIGR00540 249 LNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQA 326 (409)
T ss_pred HHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHH
Confidence 55444322 1377788888888889999999999998888864 33321 1 111122234577788888888887
Q ss_pred HcCCCCCh--hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 016027 312 CRGCDIDL--DTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFKKRGMTALAQKLCNVM 380 (396)
Q Consensus 312 ~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 380 (396)
+..+. |+ ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++.
T Consensus 327 k~~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 327 KNVDD-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HhCCC-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 76433 55 6677889999999999999999995444344688888889999999999999999999884
No 32
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.81 E-value=3.3e-15 Score=121.24 Aligned_cols=369 Identities=18% Similarity=0.249 Sum_probs=226.5
Q ss_pred hhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHH--HHHcCCHH-HHHHHHHHHhhccccc---------------
Q 016027 5 LAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRR--YARAGMVE-AAIWTFEFANNLDMVK--------------- 66 (396)
Q Consensus 5 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~--~~~~g~~~-~A~~~~~~~~~~~~~~--------------- 66 (396)
...+|.+..+.-+|+.+-..+.+. |...-..+.+. |....+.. .-.+.|-.+.+.+...
T Consensus 125 mIS~~EvKDs~ilY~~m~~e~~~v---S~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E 201 (625)
T KOG4422|consen 125 MISSREVKDSCILYERMRSENVDV---SEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFE 201 (625)
T ss_pred HHhhcccchhHHHHHHHHhcCCCC---CHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHh
Confidence 456788899988888877655432 35444444432 22222222 2223333333322111
Q ss_pred CCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhH
Q 016027 67 NFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVT 146 (396)
Q Consensus 67 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 146 (396)
..|..+.++..++.++++--..++|.+++.+.... ..+.+..+||.++.+-.-. .-.++..+|....+.||..|
T Consensus 202 ~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~--k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~T 275 (625)
T KOG4422|consen 202 TLPKTDETVSIMIAGLCKFSSLERARELYKEHRAA--KGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFT 275 (625)
T ss_pred hcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHh--hheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHh
Confidence 25778899999999999999999999999998775 4456788888887654432 22778888988889999999
Q ss_pred HHHHHHHHHccCCHHH----HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHhc----CCC----Cc
Q 016027 147 YGTLVEGYCRLRRVDR----AIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEE-VSGMMERFLVC----EPG----PT 213 (396)
Q Consensus 147 ~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~----~~~----~~ 213 (396)
+|+++.+..+.|+++. |.+++.+|++.|+.|...+|..++..+.+-++..+ |..++..+... ..+ .+
T Consensus 276 fNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d 355 (625)
T KOG4422|consen 276 FNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTD 355 (625)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCch
Confidence 9999999999997764 56778888889999999999999988888777644 44444444321 111 23
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHCC----CCCC---hhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhh
Q 016027 214 MVTYTSLVKGYCKAGDLEGASKILKMMISRG----FLPS---PTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLT 286 (396)
Q Consensus 214 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 286 (396)
...|...+..|....+.+.|.++..-+.... +.|+ ..-|..+..+.+.....+.-...|+.+.-+-.-|+..+
T Consensus 356 ~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~ 435 (625)
T KOG4422|consen 356 NKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQT 435 (625)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchh
Confidence 4556666777777777777776655544321 1111 12234444455555555555666666555544555555
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCC---------------------------------------------------
Q 016027 287 YHILLKILCKEDKLDLAIQVSKEMKCRGC--------------------------------------------------- 315 (396)
Q Consensus 287 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--------------------------------------------------- 315 (396)
...++++....|.++-.-++|..++..|.
T Consensus 436 m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~ 515 (625)
T KOG4422|consen 436 MIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQ 515 (625)
T ss_pred HHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 55555555555555555555544443332
Q ss_pred ---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHHHHH---HHHHHHHHcCCchHHHHHHHHHhc
Q 016027 316 ---DIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRG-LVPHYLTFK---RLNDEFKKRGMTALAQKLCNVMSS 382 (396)
Q Consensus 316 ---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~~~~---~l~~~~~~~g~~~~A~~~~~~~~~ 382 (396)
.......+.++..+.+.|..++|.+++..+.+.+ -.|-....+ .+++...+.+....|..+++-+..
T Consensus 516 r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~ 589 (625)
T KOG4422|consen 516 RAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASA 589 (625)
T ss_pred HhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 2233334555556666677777777776665432 122222333 444555566666666666666544
No 33
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.81 E-value=8.1e-16 Score=133.71 Aligned_cols=296 Identities=12% Similarity=0.002 Sum_probs=221.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHH
Q 016027 40 IRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGW 119 (396)
Q Consensus 40 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 119 (396)
+......|+++.|.+.+.+..+.. |.....+...+.++...|+++.|.+++.++.+..|+ +...........+
T Consensus 91 glla~~~g~~~~A~~~l~~~~~~~-----~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~--~~l~~~~~~a~l~ 163 (409)
T TIGR00540 91 ALLKLAEGDYAKAEKLIAKNADHA-----AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGN--DNILVEIARTRIL 163 (409)
T ss_pred HHHHHhCCCHHHHHHHHHHHhhcC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc--CchHHHHHHHHHH
Confidence 444566899999999999887752 333444556678888999999999999998775332 2223444457888
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHH---HHcCCH
Q 016027 120 FRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVY-NTVIDGL---VEAGRF 195 (396)
Q Consensus 120 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~---~~~~~~ 195 (396)
...|+++.|...++.+.+..+. +...+..+...+...|++++|.+++..+.+.+.. +...+ ..-..++ ...+..
T Consensus 164 l~~~~~~~Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~ 241 (409)
T TIGR00540 164 LAQNELHAARHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMA 241 (409)
T ss_pred HHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998644 7778899999999999999999999999998744 33333 2222222 333344
Q ss_pred HHHHHHHHHHHhcCCC---CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhh---HHHHHHHHhccCCHHHHH
Q 016027 196 EEVSGMMERFLVCEPG---PTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTT---YNYFFRYFSKFGKVEDAM 269 (396)
Q Consensus 196 ~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~ 269 (396)
+...+.+..+.+..+. .+...+..+...+...|+.++|.+++++..+... +... ...........++.+.+.
T Consensus 242 ~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~p--d~~~~~~~~l~~~~~l~~~~~~~~~ 319 (409)
T TIGR00540 242 DEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLG--DDRAISLPLCLPIPRLKPEDNEKLE 319 (409)
T ss_pred hcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC--CcccchhHHHHHhhhcCCCChHHHH
Confidence 4444566655554332 3778889999999999999999999999999743 3331 122222234457888999
Q ss_pred HHHHHHHHCCCCCCh--hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 016027 270 NLYRKMIESGYTPDR--LTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIR 347 (396)
Q Consensus 270 ~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 347 (396)
+.++...+... -|+ .....+...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.++|++...
T Consensus 320 ~~~e~~lk~~p-~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 320 KLIEKQAKNVD-DKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHHHHhCC-CChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99988887632 244 566788999999999999999999655544578888899999999999999999999998754
No 34
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.81 E-value=1.4e-15 Score=131.45 Aligned_cols=284 Identities=12% Similarity=0.054 Sum_probs=223.0
Q ss_pred HcCChHHHHHHHHHHhhccCCCCCChHH-HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHH--HHHHHHHccCCH
Q 016027 84 KQGRVKAASEYFHKRKELDQSWAPTVRV-YNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYG--TLVEGYCRLRRV 160 (396)
Q Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~ 160 (396)
..|+++.|.+.+....... ++... |........+.|+++.|.+.+.++.+. .|+..... .....+...|++
T Consensus 96 ~eGd~~~A~k~l~~~~~~~----~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~ 169 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHA----EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNEN 169 (398)
T ss_pred hCCCHHHHHHHHHHHHhcc----cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCH
Confidence 4699999998888765531 12333 334455568899999999999999875 44543322 446788999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch-------hhHHHHHHHHHhcCChHHH
Q 016027 161 DRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTM-------VTYTSLVKGYCKAGDLEGA 233 (396)
Q Consensus 161 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a 233 (396)
+.|...++++.+.. +-++.....+...|.+.|++++|..++..+.+.+..++. .+|..++.......+.+..
T Consensus 170 ~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l 248 (398)
T PRK10747 170 HAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGL 248 (398)
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 99999999999885 557788889999999999999999999999987664322 1333444444445556667
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 016027 234 SKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCR 313 (396)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 313 (396)
.++++.+.+. .+.++.....+...+...|+.++|.+.+++..+. .+++... ++.+....++.+++.+..+...+.
T Consensus 249 ~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~ 323 (398)
T PRK10747 249 KRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ 323 (398)
T ss_pred HHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhh
Confidence 7777776554 3457888999999999999999999999998885 4555332 233344569999999999999987
Q ss_pred CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhc
Q 016027 314 GCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFKKRGMTALAQKLCNVMSS 382 (396)
Q Consensus 314 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 382 (396)
.+. |+..+..+...+.+.+++++|.+.|+...+. .|+..++..+..++.+.|+.++|..++++-..
T Consensus 324 ~P~-~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 324 HGD-TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 654 7888999999999999999999999999985 68999999999999999999999999998544
No 35
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.81 E-value=4.5e-19 Score=146.63 Aligned_cols=263 Identities=16% Similarity=0.174 Sum_probs=106.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHH
Q 016027 38 ILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLN 117 (396)
Q Consensus 38 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~ 117 (396)
.++..+.+.|++++|++++.+..... ..+.++..|..++......++++.|.+.++++...++. +...+..++.
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~---~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~---~~~~~~~l~~ 86 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKI---APPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA---NPQDYERLIQ 86 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccc---cccccccccccccccccccccccccccccccccccccc---cccccccccc
Confidence 56888888899999999886543321 01556677777777888888899999999988876443 4556666766
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCCHH
Q 016027 118 GWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEG-IEPNAIVYNTVIDGLVEAGRFE 196 (396)
Q Consensus 118 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~ 196 (396)
. ...+++++|.+++....+.. ++...+..++..+...++++++..+++.+.... .+.+...|..+...+.+.|+.+
T Consensus 87 l-~~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~ 163 (280)
T PF13429_consen 87 L-LQDGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPD 163 (280)
T ss_dssp ----------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHH
T ss_pred c-cccccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHH
Confidence 6 68888899988888776542 466677778888888889999888888877543 3456777888888888899999
Q ss_pred HHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHH
Q 016027 197 EVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMI 276 (396)
Q Consensus 197 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 276 (396)
+|++.+++.++..|. +......++..+...|+.+++..++....+.. +.++..+..+..++...|++++|..+|++..
T Consensus 164 ~A~~~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~ 241 (280)
T PF13429_consen 164 KALRDYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKAL 241 (280)
T ss_dssp HHHHHHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccc
Confidence 999999998887553 67778888888888888888888888877764 4466777888888888899999999999888
Q ss_pred HCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016027 277 ESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKC 312 (396)
Q Consensus 277 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 312 (396)
+.+ +.|+.....+..++...|+.++|.++.+++..
T Consensus 242 ~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 242 KLN-PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHS-TT-HHHHHHHHHHHT-----------------
T ss_pred ccc-cccccccccccccccccccccccccccccccc
Confidence 764 33778888888888899999999888877654
No 36
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.80 E-value=8e-16 Score=125.84 Aligned_cols=363 Identities=12% Similarity=0.049 Sum_probs=242.0
Q ss_pred hhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccC--------CCCchhHH
Q 016027 4 VLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKN--------FDSGASLF 75 (396)
Q Consensus 4 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--------~~~~~~~~ 75 (396)
.+.+.|+++.|+.-|+.+++. .|+ ..+-..|+-++.-.|+.++..+.|.+++......+ -.|+....
T Consensus 285 tfiq~gqy~dainsfdh~m~~--~pn---~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll 359 (840)
T KOG2003|consen 285 TFIQAGQYDDAINSFDHCMEE--APN---FIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLL 359 (840)
T ss_pred eEEecccchhhHhhHHHHHHh--Ccc---HHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHH
Confidence 367889999999999999985 677 44556677777789999999999999988654321 01111111
Q ss_pred HHHH-----HHHHHcCChHHHHHHHHHH----------------------hhccCCCCCChHHHHHHHHHHHhcCChhHH
Q 016027 76 EILL-----DSLCKQGRVKAASEYFHKR----------------------KELDQSWAPTVRVYNILLNGWFRSKNVKDA 128 (396)
Q Consensus 76 ~~l~-----~~~~~~~~~~~A~~~~~~~----------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 128 (396)
+..+ .-+.+.++ ..|.+.+-.. .+.....+.-...-..-..-+.+.|+++.|
T Consensus 360 ~eai~nd~lk~~ek~~k-a~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~a 438 (840)
T KOG2003|consen 360 NEAIKNDHLKNMEKENK-ADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGA 438 (840)
T ss_pred HHHHhhHHHHHHHHhhh-hhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHH
Confidence 1111 11111111 1111111100 000000011111112223334555666665
Q ss_pred HHHHHHHHhCCCC------------------------------------CChhHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 016027 129 ERFWLEMRKENVT------------------------------------PNVVTYGTLVEGYCRLRRVDRAIRLVKEMRK 172 (396)
Q Consensus 129 ~~~~~~~~~~~~~------------------------------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 172 (396)
+++++-+.+..-+ -+......-.+.....|++++|.+.|++.+.
T Consensus 439 ieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ 518 (840)
T KOG2003|consen 439 IEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALN 518 (840)
T ss_pred HHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHc
Confidence 5555544332111 1111222222223346889999999999887
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhH
Q 016027 173 EGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTY 252 (396)
Q Consensus 173 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 252 (396)
....-. .....+.-.+...|+.++|+..|-++... ...+..+...+.+.|-...+..+|++++.+.... ++.|+...
T Consensus 519 ndasc~-ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~il 595 (840)
T KOG2003|consen 519 NDASCT-EALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAIL 595 (840)
T ss_pred CchHHH-HHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHH
Confidence 642222 22233344577889999999999888665 2357788888999999999999999999998876 56689999
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH-Hh
Q 016027 253 NYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLL-CR 331 (396)
Q Consensus 253 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~ 331 (396)
+.|...|-+.|+-.+|.+.+-+--.. ++-+..+...|...|....-+++++.+|++..- +.|+..-|..++..| .+
T Consensus 596 skl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rr 672 (840)
T KOG2003|consen 596 SKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRR 672 (840)
T ss_pred HHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHh
Confidence 99999999999999999987665443 456888999999999999999999999998764 478999998877655 56
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 016027 332 MYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFKKRGMTALAQKLCNVM 380 (396)
Q Consensus 332 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 380 (396)
.|++.+|..++++..++ ++-|...+..|++.+...|.. ++.++-+++
T Consensus 673 sgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl~-d~key~~kl 719 (840)
T KOG2003|consen 673 SGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGLK-DAKEYADKL 719 (840)
T ss_pred cccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccch-hHHHHHHHH
Confidence 89999999999998764 677888899999998888753 344444443
No 37
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.79 E-value=1.5e-18 Score=143.48 Aligned_cols=263 Identities=13% Similarity=0.131 Sum_probs=113.4
Q ss_pred HHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHc
Q 016027 77 ILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCR 156 (396)
Q Consensus 77 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 156 (396)
.+...+.+.|++++|++++....... ..+.+...|..+...+...++++.|...|+++...+.. +...+..++.. ..
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~-~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~ 89 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKI-APPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQ 89 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccc-ccccccccccc-cc
Confidence 66888999999999999996544321 01235667777777888899999999999999887544 66677777777 78
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCchhhHHHHHHHHHhcCChHHHHH
Q 016027 157 LRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCE-PGPTMVTYTSLVKGYCKAGDLEGASK 235 (396)
Q Consensus 157 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~ 235 (396)
.+++++|.+++....+. .+++..+..++..+.+.++++++..+++.+.... .+.+...|..+...+.+.|+.++|..
T Consensus 90 ~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~ 167 (280)
T PF13429_consen 90 DGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALR 167 (280)
T ss_dssp ------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred ccccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 89999999998887665 3566777888888999999999999999977543 24577788889999999999999999
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 016027 236 ILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGC 315 (396)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 315 (396)
.+++..+..+. +......++..+...|+.+++..++....+.. +.|+..+..+..++...|+.++|..++++..+..+
T Consensus 168 ~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p 245 (280)
T PF13429_consen 168 DYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNP 245 (280)
T ss_dssp HHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccccc
Confidence 99999987433 67888899999999999999888888877764 44667788899999999999999999999988754
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 016027 316 DIDLDTSTMLIHLLCRMYKFDEASAEFEDMIR 347 (396)
Q Consensus 316 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 347 (396)
. |+.+...+..++...|+.++|.++..+...
T Consensus 246 ~-d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 246 D-DPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp T--HHHHHHHHHHHT-----------------
T ss_pred c-cccccccccccccccccccccccccccccc
Confidence 4 889999999999999999999999887654
No 38
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.79 E-value=2.8e-16 Score=134.22 Aligned_cols=288 Identities=15% Similarity=0.087 Sum_probs=173.7
Q ss_pred CHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhH
Q 016027 48 MVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKD 127 (396)
Q Consensus 48 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 127 (396)
+..+|+..|.+.... ++....+...++.+|...+++++|.++|+.+....|-...+.++|.+.+-.+-+. -+
T Consensus 334 ~~~~A~~~~~klp~h-----~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~---v~ 405 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-----HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE---VA 405 (638)
T ss_pred HHHHHHHHHHhhHHh-----cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh---HH
Confidence 456677777764443 2444466666777777777777777777777776665555666666665433221 11
Q ss_pred HHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 016027 128 AERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLV 207 (396)
Q Consensus 128 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 207 (396)
---+-+.+.... +-.+.+|.++.++|.-.++.+.|++.|++.++.+ +-...+|+.+..-+....++|.|...|+..+.
T Consensus 406 Ls~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~ 483 (638)
T KOG1126|consen 406 LSYLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALG 483 (638)
T ss_pred HHHHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhc
Confidence 111122222221 2255677777777777777777777777766652 22556666666666666677777777776655
Q ss_pred cCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhH
Q 016027 208 CEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTY 287 (396)
Q Consensus 208 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 287 (396)
..+ ..-.+|..+...|.+.++++.|+-.|+.+.+.++. +......+...+.+.|+.++|+++++++...+.. |+..-
T Consensus 484 ~~~-rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~ 560 (638)
T KOG1126|consen 484 VDP-RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCK 560 (638)
T ss_pred CCc-hhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhH
Confidence 433 23445555666677777777777777776665433 5555666666666677777777777776665433 44444
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 016027 288 HILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRG 349 (396)
Q Consensus 288 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 349 (396)
...+..+...++.++|+..++++++.-++ +..++..+...|.+.|+.+.|+.-|.-+.+.+
T Consensus 561 ~~~~~il~~~~~~~eal~~LEeLk~~vP~-es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 561 YHRASILFSLGRYVEALQELEELKELVPQ-ESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 44455556666777777777776665322 55566666666777777777766666665543
No 39
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.78 E-value=4.3e-15 Score=116.16 Aligned_cols=291 Identities=14% Similarity=0.131 Sum_probs=155.0
Q ss_pred HcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCC--hHHHHHHHHHHHhc
Q 016027 45 RAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPT--VRVYNILLNGWFRS 122 (396)
Q Consensus 45 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~ 122 (396)
-.++.++|++.|-.+.+.+ |...++...|++.+-..|..++|+.+.+.+... |+..-+ ......|..-|...
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d-----~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~~Dym~a 120 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQED-----PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLGRDYMAA 120 (389)
T ss_pred hhcCcchHHHHHHHHHhcC-----chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHHHHh
Confidence 3455666666666666643 555556666666666666666666666665543 221111 12234455556666
Q ss_pred CChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCCHHHH
Q 016027 123 KNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPN----AIVYNTVIDGLVEAGRFEEV 198 (396)
Q Consensus 123 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a 198 (396)
|-++.|+.+|..+.+.+. --..+...|+..|-...+|++|++.-+++.+.+-.+. ...|--+...+....+++.|
T Consensus 121 Gl~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A 199 (389)
T COG2956 121 GLLDRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRA 199 (389)
T ss_pred hhhhHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHH
Confidence 666666666666655432 2344555666666666666666666666655542222 12334455555555666666
Q ss_pred HHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 016027 199 SGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIES 278 (396)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 278 (396)
..++.+..+.+++ .+.+--.+...+...|+++.|.+.++.+.+.+..--+.+...|..+|...|+.++....+..+.+.
T Consensus 200 ~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 200 RELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred HHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 6666666655432 333444455566666666666666666666554444455566666666666666666666666554
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh---cCChhHHHHHHHHHHH
Q 016027 279 GYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCR---MYKFDEASAEFEDMIR 347 (396)
Q Consensus 279 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~ 347 (396)
.. ....-..+..........+.|...+.+-... +|+...+..++..-.. .|...+-+..+++|+.
T Consensus 279 ~~--g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 279 NT--GADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred cC--CccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 32 2222233333333334444444444444433 4566666666654432 2334445555555544
No 40
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=1.1e-14 Score=120.17 Aligned_cols=366 Identities=13% Similarity=0.008 Sum_probs=258.7
Q ss_pred hhhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHH
Q 016027 3 KVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSL 82 (396)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 82 (396)
+.+.+.|+|++|++.|..++.. .|++ +..|.....+|...|+|++.++.-.++.+.+ |....++..-..++
T Consensus 123 N~~f~~kkY~eAIkyY~~AI~l--~p~e--piFYsNraAcY~~lgd~~~Vied~TkALEl~-----P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 123 NKFFRNKKYDEAIKYYTQAIEL--CPDE--PIFYSNRAACYESLGDWEKVIEDCTKALELN-----PDYVKALLRRASAH 193 (606)
T ss_pred hhhhhcccHHHHHHHHHHHHhc--CCCC--chhhhhHHHHHHHHhhHHHHHHHHHHHhhcC-----cHHHHHHHHHHHHH
Confidence 4577899999999999999986 4542 3378899999999999999999999999986 77777888888888
Q ss_pred HHcCChHHHHHHHHH-------------------------------HhhccCCCCCChHHHHHHHHHHHh----------
Q 016027 83 CKQGRVKAASEYFHK-------------------------------RKELDQSWAPTVRVYNILLNGWFR---------- 121 (396)
Q Consensus 83 ~~~~~~~~A~~~~~~-------------------------------~~~~~~~~~~~~~~~~~l~~~~~~---------- 121 (396)
-..|++++|+.=..- +....+..-|+.....+....+..
T Consensus 194 E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~ 273 (606)
T KOG0547|consen 194 EQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKS 273 (606)
T ss_pred HhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCC
Confidence 888888876542110 111112233444333333333211
Q ss_pred ---------------cC---ChhHHHHHHHHHHhC---CCCCC---------hhHHHHHHHHHHccCCHHHHHHHHHHHH
Q 016027 122 ---------------SK---NVKDAERFWLEMRKE---NVTPN---------VVTYGTLVEGYCRLRRVDRAIRLVKEMR 171 (396)
Q Consensus 122 ---------------~~---~~~~a~~~~~~~~~~---~~~~~---------~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 171 (396)
.+ .+..|...+.+-... ....+ ..+.......+.-.|+.-.|..-|+..+
T Consensus 274 ~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I 353 (606)
T KOG0547|consen 274 DKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAI 353 (606)
T ss_pred ccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHH
Confidence 00 122222222221110 01111 1122222233444578888888888888
Q ss_pred HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhh
Q 016027 172 KEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTT 251 (396)
Q Consensus 172 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 251 (396)
+....+ ...|.-+..+|....+.++..+.|....+.++. ++.+|..-...+.-.+++++|..-|++.++..+. +...
T Consensus 354 ~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~~~ 430 (606)
T KOG0547|consen 354 KLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-NAYA 430 (606)
T ss_pred hcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hhHH
Confidence 875332 233677777899999999999999999988764 7778888888888899999999999999987533 6667
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-------CChhhHHH
Q 016027 252 YNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCD-------IDLDTSTM 324 (396)
Q Consensus 252 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-------~~~~~~~~ 324 (396)
|..+.-+..+.+.+++++..|++..+. ++--+..|+.....+...++++.|.+.|+..++.... +.+.+...
T Consensus 431 ~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka 509 (606)
T KOG0547|consen 431 YIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKA 509 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhh
Confidence 777777778889999999999998886 4446788999999999999999999999998876332 22223333
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcc
Q 016027 325 LIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFKKRGMTALAQKLCNVMSSV 383 (396)
Q Consensus 325 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 383 (396)
++..- -.+++..|..++++.++.+. -....+..|...-.+.|+.++|+++|++-...
T Consensus 510 ~l~~q-wk~d~~~a~~Ll~KA~e~Dp-kce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 510 LLVLQ-WKEDINQAENLLRKAIELDP-KCEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred Hhhhc-hhhhHHHHHHHHHHHHccCc-hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 33222 34899999999999988652 34567889999999999999999999985443
No 41
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.76 E-value=1.5e-14 Score=113.15 Aligned_cols=290 Identities=17% Similarity=0.148 Sum_probs=230.6
Q ss_pred HcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCC--hhHHHHHHHHHHccCCH
Q 016027 84 KQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKEN-VTPN--VVTYGTLVEGYCRLRRV 160 (396)
Q Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~~~~ 160 (396)
-.++.++|.+.|-++.+.++. +..+.-+|.+.|-+.|..+.|+++...+..+. .+.+ ......|.+-|...|-+
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d~~---t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQEDPE---TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hhcCcchHHHHHHHHHhcCch---hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhh
Confidence 457899999999999986544 67777889999999999999999999998762 1111 23456678889999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc----hhhHHHHHHHHHhcCChHHHHHH
Q 016027 161 DRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPT----MVTYTSLVKGYCKAGDLEGASKI 236 (396)
Q Consensus 161 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~ 236 (396)
+.|..+|..+.+.| ..-......++..|-...+|++|+++-+++.+.+.++. ...|.-+...+....+.+.|...
T Consensus 124 DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 124 DRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred hHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 99999999999875 44566788899999999999999999999988776543 24566777777788899999999
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 016027 237 LKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCD 316 (396)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 316 (396)
+.+..+.+.+ ....-..+.+.....|+++.|.+.++.+.+.+...-+.+...|..+|...|+.++....+..+.+..
T Consensus 203 l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~-- 279 (389)
T COG2956 203 LKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN-- 279 (389)
T ss_pred HHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--
Confidence 9999987544 6666777888999999999999999999998766667788899999999999999999999998763
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---HcCCchHHHHHHHHHhc
Q 016027 317 IDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFK---KRGMTALAQKLCNVMSS 382 (396)
Q Consensus 317 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~ 382 (396)
++...-..+........-.+.|...+.+-+.. +|+...+..++..-. .-|...+....++.|..
T Consensus 280 ~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 280 TGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 34445555555555555667777776666654 699999999998664 34556666677777654
No 42
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.76 E-value=9.1e-16 Score=131.12 Aligned_cols=288 Identities=16% Similarity=0.119 Sum_probs=228.7
Q ss_pred CChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCC---CCCChhHHHHHHHHHHccCCHHH
Q 016027 86 GRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKEN---VTPNVVTYGTLVEGYCRLRRVDR 162 (396)
Q Consensus 86 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~ 162 (396)
-+..+|+..|.+.....++ +..+...+..+|...+++++|.++|+.+.+.. +. +...|.+.+.-+-+ .-+
T Consensus 333 y~~~~A~~~~~klp~h~~n---t~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~-~meiyST~LWHLq~---~v~ 405 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSHHYN---TGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVK-GMEIYSTTLWHLQD---EVA 405 (638)
T ss_pred HHHHHHHHHHHhhHHhcCC---chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc-chhHHHHHHHHHHh---hHH
Confidence 3578899999986654333 44667788999999999999999999998752 22 56677776654322 222
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 016027 163 AIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMIS 242 (396)
Q Consensus 163 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 242 (396)
---+-+.+.+.. +..+.+|-++.++|.-+++.+.|++.|++..+.++ ....+|+.+..-+....++|.|...|...+.
T Consensus 406 Ls~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp-~faYayTLlGhE~~~~ee~d~a~~~fr~Al~ 483 (638)
T KOG1126|consen 406 LSYLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDP-RFAYAYTLLGHESIATEEFDKAMKSFRKALG 483 (638)
T ss_pred HHHHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCC-ccchhhhhcCChhhhhHHHHhHHHHHHhhhc
Confidence 122334444443 66789999999999999999999999999998644 2778999999999999999999999999887
Q ss_pred CCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhH
Q 016027 243 RGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTS 322 (396)
Q Consensus 243 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 322 (396)
.... +-.+|--+...|.+.++++.|+-.|+++.+-++. +.+....+...+.+.|+.++|+++++++....+. |+..-
T Consensus 484 ~~~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~ 560 (638)
T KOG1126|consen 484 VDPR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCK 560 (638)
T ss_pred CCch-hhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhH
Confidence 5332 4445556778899999999999999999987643 6777788888999999999999999999988766 66666
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCchHHHHHHHHHhccchhh
Q 016027 323 TMLIHLLCRMYKFDEASAEFEDMIRRGLVPH-YLTFKRLNDEFKKRGMTALAQKLCNVMSSVPRSM 387 (396)
Q Consensus 323 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 387 (396)
-.-+..+...+++++|+..++++.+. .|+ ...+..+...|.+.|+.+.|+.-|.-+.+.++..
T Consensus 561 ~~~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 561 YHRASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 66778888899999999999999884 454 5567788889999999999999999887765543
No 43
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.76 E-value=1.4e-13 Score=117.73 Aligned_cols=363 Identities=12% Similarity=0.055 Sum_probs=219.0
Q ss_pred hccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcC
Q 016027 7 KAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQG 86 (396)
Q Consensus 7 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 86 (396)
..|-.-.+..+....+.-+.... --..+|..-.+.|.+.+.++-|..+|..+++. +|.+..+|......--..|
T Consensus 491 ~agsv~TcQAIi~avigigvEee-d~~~tw~~da~~~~k~~~~~carAVya~alqv-----fp~k~slWlra~~~ek~hg 564 (913)
T KOG0495|consen 491 DAGSVITCQAIIRAVIGIGVEEE-DRKSTWLDDAQSCEKRPAIECARAVYAHALQV-----FPCKKSLWLRAAMFEKSHG 564 (913)
T ss_pred hcCChhhHHHHHHHHHhhccccc-hhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-----ccchhHHHHHHHHHHHhcC
Confidence 33444555555555554433211 01346666666666666666666666666665 2555566666665555566
Q ss_pred ChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHH
Q 016027 87 RVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRL 166 (396)
Q Consensus 87 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 166 (396)
..++-..+|+++...- +.....|...+..+...|+...|..++....+.... +...|..-+..-....++++|..+
T Consensus 565 t~Esl~Allqkav~~~---pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~l 640 (913)
T KOG0495|consen 565 TRESLEALLQKAVEQC---PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDL 640 (913)
T ss_pred cHHHHHHHHHHHHHhC---CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHH
Confidence 6666666666665532 224445555555555666666666666666655433 555666666666666666666666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 016027 167 VKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFL 246 (396)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 246 (396)
|.+.... .|+..+|.--+...--.+..++|++++++.++.-+ .-...|..+.+.+-+.++.+.|...|..-.+. ++
T Consensus 641 lakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp-~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP 716 (913)
T KOG0495|consen 641 LAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKSFP-DFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CP 716 (913)
T ss_pred HHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCC-chHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CC
Confidence 6655543 44555555545444455666666666666665422 23445555666666666666666666555554 23
Q ss_pred CChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC------------
Q 016027 247 PSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRG------------ 314 (396)
Q Consensus 247 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------------ 314 (396)
.....|..+...-.+.|++-.|..++++.+-.++. +...|...+++-.+.|+.+.|..+..+++..-
T Consensus 717 ~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~ 795 (913)
T KOG0495|consen 717 NSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIW 795 (913)
T ss_pred CCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHH
Confidence 34445555555555556666666666665555433 55556666666666666666555544443210
Q ss_pred -----------------CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCchHHHHHH
Q 016027 315 -----------------CDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFKKRGMTALAQKLC 377 (396)
Q Consensus 315 -----------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 377 (396)
..-|+.+.-.+...|....++++|.+.|.+.++.+ +.+-.+|.-+..-+.+.|.-++-.+++
T Consensus 796 le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel~hG~eed~kev~ 874 (913)
T KOG0495|consen 796 LEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PDNGDAWAWFYKFELRHGTEEDQKEVL 874 (913)
T ss_pred hccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-CccchHHHHHHHHHHHhCCHHHHHHHH
Confidence 23366777777888888889999999999998865 345568888888889999888888888
Q ss_pred HHHhccch
Q 016027 378 NVMSSVPR 385 (396)
Q Consensus 378 ~~~~~~~~ 385 (396)
.+.....+
T Consensus 875 ~~c~~~EP 882 (913)
T KOG0495|consen 875 KKCETAEP 882 (913)
T ss_pred HHHhccCC
Confidence 88766543
No 44
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.75 E-value=7.4e-14 Score=112.62 Aligned_cols=287 Identities=12% Similarity=0.078 Sum_probs=160.1
Q ss_pred HcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCC
Q 016027 45 RAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKN 124 (396)
Q Consensus 45 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 124 (396)
..|+|.+|.+...+..+.. +...-.|..-+.+--..|+.+.+-.++.++.+. ...++....-+........|+
T Consensus 96 ~eG~~~qAEkl~~rnae~~-----e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~--~~~~~l~v~ltrarlll~~~d 168 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHG-----EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAEL--AGDDTLAVELTRARLLLNRRD 168 (400)
T ss_pred hcCcHHHHHHHHHHhhhcC-----cchHHHHHHHHHHHHhcccHHHHHHHHHHHhcc--CCCchHHHHHHHHHHHHhCCC
Confidence 3566666666666655542 222233444444455556666666666666554 122444555555566666666
Q ss_pred hhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHHcCCHHH
Q 016027 125 VKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNA-------IVYNTVIDGLVEAGRFEE 197 (396)
Q Consensus 125 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~ 197 (396)
++.|..-.+.+.+.+.. ++.......++|.+.|++.....++..+.+.|.-.+. .++..+++-....+..+.
T Consensus 169 ~~aA~~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~g 247 (400)
T COG3071 169 YPAARENVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEG 247 (400)
T ss_pred chhHHHHHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchH
Confidence 66666666666655433 5555666666666666666666666666666543332 344555554444444444
Q ss_pred HHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 016027 198 VSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIE 277 (396)
Q Consensus 198 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 277 (396)
-...|+..... ...++..-.+++.-+.++|+.++|.++.++..+.+..|. . ...-.+.+.+++..-.+..++..+
T Consensus 248 L~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L-~~~~~~l~~~d~~~l~k~~e~~l~ 322 (400)
T COG3071 248 LKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---L-CRLIPRLRPGDPEPLIKAAEKWLK 322 (400)
T ss_pred HHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---H-HHHHhhcCCCCchHHHHHHHHHHH
Confidence 44455544332 223445555566666666666666666666666544433 1 112233455555555555555444
Q ss_pred CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 016027 278 SGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIR 347 (396)
Q Consensus 278 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 347 (396)
.. +-++..+..|...|.+.+.+.+|...|+...+. .|+..+|+.+.+++.+.|+..+|..+.++.+.
T Consensus 323 ~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 323 QH-PEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred hC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 42 224456666666666666666666666655544 45666666666666666666666666666554
No 45
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=3.6e-13 Score=110.97 Aligned_cols=368 Identities=13% Similarity=0.053 Sum_probs=220.6
Q ss_pred hccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcC
Q 016027 7 KAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQG 86 (396)
Q Consensus 7 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 86 (396)
+..+...|..++++++.. -|. + ...|...+.+--..|+..-|.++|++-... .|+..+|...+..-.+.+
T Consensus 119 knk~vNhARNv~dRAvt~--lPR-V-dqlWyKY~ymEE~LgNi~gaRqiferW~~w------~P~eqaW~sfI~fElRyk 188 (677)
T KOG1915|consen 119 KNKQVNHARNVWDRAVTI--LPR-V-DQLWYKYIYMEEMLGNIAGARQIFERWMEW------EPDEQAWLSFIKFELRYK 188 (677)
T ss_pred hhhhHhHHHHHHHHHHHh--cch-H-HHHHHHHHHHHHHhcccHHHHHHHHHHHcC------CCcHHHHHHHHHHHHHhh
Confidence 445555566666555553 222 1 345555555555556666666666655554 455555666666655666
Q ss_pred ChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhC-CC-CCChhHHHHHHHHHHccCCHHHHH
Q 016027 87 RVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKE-NV-TPNVVTYGTLVEGYCRLRRVDRAI 164 (396)
Q Consensus 87 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~a~ 164 (396)
.++.|..++++..-. .|++..|-..+..-.++|+...+..+|+...+. |- ..+...+.+....-.....++.|.
T Consensus 189 eieraR~IYerfV~~----HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar 264 (677)
T KOG1915|consen 189 EIERARSIYERFVLV----HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERAR 264 (677)
T ss_pred HHHHHHHHHHHHhee----cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666655432 255555555555555556555555555555443 10 001122222222222223333333
Q ss_pred HHHHHHH--------------------------------------------HcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 016027 165 RLVKEMR--------------------------------------------KEGIEPNAIVYNTVIDGLVEAGRFEEVSG 200 (396)
Q Consensus 165 ~~~~~~~--------------------------------------------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 200 (396)
-+|+-.+ +.+ +.|..+|--.++.-...|+.+...+
T Consensus 265 ~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire 343 (677)
T KOG1915|consen 265 FIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRE 343 (677)
T ss_pred HHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHH
Confidence 3333322 222 3455666666666677778888888
Q ss_pred HHHHHHhcCCCCchh-hHHHH--------HHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHH----HhccCCHHH
Q 016027 201 MMERFLVCEPGPTMV-TYTSL--------VKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRY----FSKFGKVED 267 (396)
Q Consensus 201 ~~~~~~~~~~~~~~~-~~~~l--------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~ 267 (396)
+|++++..-++.+.. .|.-. +-.-....+.+.+.+++....+. ++....||..+--. -.++.+...
T Consensus 344 ~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ 422 (677)
T KOG1915|consen 344 TYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTG 422 (677)
T ss_pred HHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHH
Confidence 888877653321111 11111 11112456777778888777774 34445555544333 346677888
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 016027 268 AMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIR 347 (396)
Q Consensus 268 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 347 (396)
|.+++...+. ..|-..+|...|..-.+.++++.+..++++.++-++. +..+|......-...|+.+.|..+|+-.++
T Consensus 423 ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~ 499 (677)
T KOG1915|consen 423 ARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAIS 499 (677)
T ss_pred HHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhc
Confidence 8888877654 4678888888888888889999999999999987755 778888888888888999999999998887
Q ss_pred CCC-CCCHHHHHHHHHHHHHcCCchHHHHHHHHHhccchhhhhhhhh
Q 016027 348 RGL-VPHYLTFKRLNDEFKKRGMTALAQKLCNVMSSVPRSMELLDSR 393 (396)
Q Consensus 348 ~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 393 (396)
... ......|.+.|+--...|.++.|..+++++........+.-|+
T Consensus 500 qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisF 546 (677)
T KOG1915|consen 500 QPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISF 546 (677)
T ss_pred CcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhH
Confidence 431 2223456677776778999999999999976655444444443
No 46
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=5.3e-14 Score=115.41 Aligned_cols=352 Identities=12% Similarity=0.077 Sum_probs=234.6
Q ss_pred hhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhH--HHHHHHHH
Q 016027 5 LAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASL--FEILLDSL 82 (396)
Q Consensus 5 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~ 82 (396)
+.+.|....|...|...+.. .|- ...+|..|..... +. +........ .+.+... =..+..++
T Consensus 174 ~k~~~~~s~A~~sfv~~v~~--~P~--~W~AWleL~~lit---~~----e~~~~l~~~-----l~~~~h~M~~~F~~~a~ 237 (559)
T KOG1155|consen 174 LKELGLLSLAIDSFVEVVNR--YPW--FWSAWLELSELIT---DI----EILSILVVG-----LPSDMHWMKKFFLKKAY 237 (559)
T ss_pred HHhhchHHHHHHHHHHHHhc--CCc--chHHHHHHHHhhc---hH----HHHHHHHhc-----CcccchHHHHHHHHHHH
Confidence 45678888899888887763 343 2445655554432 22 222222221 1322121 22355666
Q ss_pred HHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC--CChhHHHHHHHHHHccCCH
Q 016027 83 CKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVT--PNVVTYGTLVEGYCRLRRV 160 (396)
Q Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~ 160 (396)
....+.+++..-.+..... |++-+...-+..+.+.....++++|+.+|+++.+..+- -|..+|..++-.--....+
T Consensus 238 ~el~q~~e~~~k~e~l~~~--gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skL 315 (559)
T KOG1155|consen 238 QELHQHEEALQKKERLSSV--GFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKL 315 (559)
T ss_pred HHHHHHHHHHHHHHHHHhc--cCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHH
Confidence 6667778887777777665 54445544555556666778889999999888876211 1456666665442221111
Q ss_pred HHHHHHHH-HHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHH
Q 016027 161 DRAIRLVK-EMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKM 239 (396)
Q Consensus 161 ~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 239 (396)
.++- ...+.+ +--+.|...+.+.|.-.++.++|...|++.++.++. ...+|+.+..-|....+...|++.++.
T Consensus 316 ----s~LA~~v~~id-KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRr 389 (559)
T KOG1155|consen 316 ----SYLAQNVSNID-KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRR 389 (559)
T ss_pred ----HHHHHHHHHhc-cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHH
Confidence 1111 111111 334567777888888888888888888888887664 567888888888888888888888888
Q ss_pred HHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh
Q 016027 240 MISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDL 319 (396)
Q Consensus 240 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 319 (396)
.++.++. |-..|-.+.++|...+.+.=|+-+|++..... +-|+..|..|..+|.+.++.++|++.|......|-. +.
T Consensus 390 Avdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~ 466 (559)
T KOG1155|consen 390 AVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EG 466 (559)
T ss_pred HHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-ch
Confidence 8887544 77888888888888888888888888888764 337788888888888888888888888888876633 66
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHH----CCCC-CC-HHHHHHHHHHHHHcCCchHHHHHHHHHhcc
Q 016027 320 DTSTMLIHLLCRMYKFDEASAEFEDMIR----RGLV-PH-YLTFKRLNDEFKKRGMTALAQKLCNVMSSV 383 (396)
Q Consensus 320 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~-p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 383 (396)
..+..|...|-+.++..+|...|++.++ .|.. |. .....-|..-+.+.+++++|..+......-
T Consensus 467 ~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 467 SALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 7888888888888888888888887665 2322 21 122223455667788888887766665443
No 47
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.74 E-value=8.2e-13 Score=106.69 Aligned_cols=299 Identities=13% Similarity=0.129 Sum_probs=239.8
Q ss_pred HHHHHHHH--cCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHH
Q 016027 77 ILLDSLCK--QGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGY 154 (396)
Q Consensus 77 ~l~~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 154 (396)
.+..+..+ .|+|.+|++...+..+. +.. ....|..-+.+.-+.|+.+.+-.++.+.-+....++.....+..+..
T Consensus 87 ~~~egl~~l~eG~~~qAEkl~~rnae~--~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarll 163 (400)
T COG3071 87 ALNEGLLKLFEGDFQQAEKLLRRNAEH--GEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLL 163 (400)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhhc--Ccc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHH
Confidence 34444443 69999999999997765 322 35567777788889999999999999998874466777788888999
Q ss_pred HccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch-------hhHHHHHHHHHhc
Q 016027 155 CRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTM-------VTYTSLVKGYCKA 227 (396)
Q Consensus 155 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~ 227 (396)
...|++..|..-++.+.+.+ +-++........+|.+.|++.....++..+.+.+.-.+. .+|..++.-....
T Consensus 164 l~~~d~~aA~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~ 242 (400)
T COG3071 164 LNRRDYPAARENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDD 242 (400)
T ss_pred HhCCCchhHHHHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999886 567788899999999999999999999999998775443 4567777766666
Q ss_pred CChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 016027 228 GDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVS 307 (396)
Q Consensus 228 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 307 (396)
+..+.-...++..... ...++..-..++.-+...|+.++|.++..+..+.+..|. .. ..-.+.+.++.+.-.+..
T Consensus 243 ~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~-~~~~~l~~~d~~~l~k~~ 317 (400)
T COG3071 243 NGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LC-RLIPRLRPGDPEPLIKAA 317 (400)
T ss_pred ccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HH-HHHhhcCCCCchHHHHHH
Confidence 6666666677776554 455677888889999999999999999999998866554 22 223456778888888888
Q ss_pred HHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhccchhh
Q 016027 308 KEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFKKRGMTALAQKLCNVMSSVPRSM 387 (396)
Q Consensus 308 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 387 (396)
+...+..+. ++..+.+|...|.+.+.|.+|...|+..++. .|+..+|..+..++.+.|+..+|..+.++....-.++
T Consensus 318 e~~l~~h~~-~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~ 394 (400)
T COG3071 318 EKWLKQHPE-DPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLLTRQP 394 (400)
T ss_pred HHHHHhCCC-ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCC
Confidence 777765433 6789999999999999999999999988774 7999999999999999999999999999865544443
No 48
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=3.4e-13 Score=110.77 Aligned_cols=329 Identities=12% Similarity=0.010 Sum_probs=240.4
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHH
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVY 112 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 112 (396)
...++..+..+.+.|..+.|++.|......- |-.=.+|..|.. -..+.+.+..+...+... .....=
T Consensus 164 ~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-----P~~W~AWleL~~---lit~~e~~~~l~~~l~~~-----~h~M~~ 230 (559)
T KOG1155|consen 164 EFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-----PWFWSAWLELSE---LITDIEILSILVVGLPSD-----MHWMKK 230 (559)
T ss_pred hHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-----CcchHHHHHHHH---hhchHHHHHHHHhcCccc-----chHHHH
Confidence 5567777888889999999999999887752 444334444333 333444433332221110 011111
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHH
Q 016027 113 NILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGI--EPNAIVYNTVIDGLV 190 (396)
Q Consensus 113 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~ 190 (396)
--+..++....+.+++..-.+.....|++-+...-+....+.....++++|+.+|+++.+... --|..+|..++ |.
T Consensus 231 ~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv 308 (559)
T KOG1155|consen 231 FFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YV 308 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HH
Confidence 224456666678888888888888888776666666666677778899999999999988731 12566777666 33
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHH
Q 016027 191 EAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMN 270 (396)
Q Consensus 191 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 270 (396)
+..+-. +..+.+-.-.-.+.-+.|...+.+.|+-.++.++|...|+...+.+.. ....|+.+..-|....+...|..
T Consensus 309 ~~~~sk--Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~ 385 (559)
T KOG1155|consen 309 KNDKSK--LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIE 385 (559)
T ss_pred HhhhHH--HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHH
Confidence 332222 112211111112334568888899999999999999999999988644 67788888899999999999999
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 016027 271 LYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGL 350 (396)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 350 (396)
-|+.+++-++ -|...|..|.++|.-.+...=|+-.|+++....+. |+..|.+|..+|.+.++.++|++.|......|
T Consensus 386 sYRrAvdi~p-~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~- 462 (559)
T KOG1155|consen 386 SYRRAVDINP-RDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAILLG- 462 (559)
T ss_pred HHHHHHhcCc-hhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-
Confidence 9999998763 48889999999999999999999999999887544 88999999999999999999999999998876
Q ss_pred CCCHHHHHHHHHHHHHcCCchHHHHHHHHHhc
Q 016027 351 VPHYLTFKRLNDEFKKRGMTALAQKLCNVMSS 382 (396)
Q Consensus 351 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 382 (396)
..+...+..|.+.|.+.++.++|...+++...
T Consensus 463 dte~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 463 DTEGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 33667888999999999999999999988655
No 49
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.73 E-value=3.5e-13 Score=109.71 Aligned_cols=308 Identities=13% Similarity=0.142 Sum_probs=210.1
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHH
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVY 112 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 112 (396)
.+++..+|.++++--..+.|.+++++..... ...+..+|+.++.+-.- ....++..+|... ...||..++
T Consensus 207 ~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k----~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisq--km~Pnl~Tf 276 (625)
T KOG4422|consen 207 DETVSIMIAGLCKFSSLERARELYKEHRAAK----GKVYREAFNGLIGASSY----SVGKKLVAEMISQ--KMTPNLFTF 276 (625)
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHHhh----heeeHHhhhhhhhHHHh----hccHHHHHHHHHh--hcCCchHhH
Confidence 5589999999999999999999999888763 36777888888876543 3337788888877 788999999
Q ss_pred HHHHHHHHhcCChhH----HHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHH-HHHHHHHHHHc--C-----C-CCCH
Q 016027 113 NILLNGWFRSKNVKD----AERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDR-AIRLVKEMRKE--G-----I-EPNA 179 (396)
Q Consensus 113 ~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~--~-----~-~~~~ 179 (396)
|+++.+..+.|+++. |.+++.+|++.|+.|+..+|..++..+.+.++..+ +..++.++... | + +.+.
T Consensus 277 NalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~ 356 (625)
T KOG4422|consen 277 NALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDN 356 (625)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchh
Confidence 999999999998765 56778899999999999999999999998888755 55555555442 2 1 2244
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CCCc---hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhH
Q 016027 180 IVYNTVIDGLVEAGRFEEVSGMMERFLVCE----PGPT---MVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTY 252 (396)
Q Consensus 180 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 252 (396)
..|...+..|.+..+.+-|.++..-+.... +.|+ ..-|..+....++....+.-...++.|.-.-.-|+..+.
T Consensus 357 ~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m 436 (625)
T KOG4422|consen 357 KFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTM 436 (625)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhH
Confidence 556677777888888777777655443211 1111 122344444555555555555666666555445555555
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHCC-----------------------------------------------------
Q 016027 253 NYFFRYFSKFGKVEDAMNLYRKMIESG----------------------------------------------------- 279 (396)
Q Consensus 253 ~~l~~~~~~~~~~~~a~~~~~~~~~~~----------------------------------------------------- 279 (396)
..++++....+.++-.-+++.++...|
T Consensus 437 ~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r 516 (625)
T KOG4422|consen 437 IHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQR 516 (625)
T ss_pred HHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 555555554444444444333332221
Q ss_pred -CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CChhhHH---HHHHHHHhcCChhHHHHHHHHHHHCCC
Q 016027 280 -YTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCD-IDLDTST---MLIHLLCRMYKFDEASAEFEDMIRRGL 350 (396)
Q Consensus 280 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~---~l~~~~~~~~~~~~a~~~~~~~~~~~~ 350 (396)
........+.++-.+.+.|..++|.+++..+.+.+-+ |.....+ .++..-...++...|..+++-|...+.
T Consensus 517 ~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 517 AQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNL 592 (625)
T ss_pred hccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCc
Confidence 1122333455566677899999999999999665432 3334444 566677788899999999999977653
No 50
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=7.7e-13 Score=109.09 Aligned_cols=357 Identities=13% Similarity=0.111 Sum_probs=251.6
Q ss_pred ccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCC
Q 016027 8 AKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGR 87 (396)
Q Consensus 8 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 87 (396)
++++..|..+|++++... ..+ ...|...+.+-.++.+...|..+++++... +|.-...|...+..--..|+
T Consensus 86 q~e~~RARSv~ERALdvd-~r~---itLWlkYae~Emknk~vNhARNv~dRAvt~-----lPRVdqlWyKY~ymEE~LgN 156 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVD-YRN---ITLWLKYAEFEMKNKQVNHARNVWDRAVTI-----LPRVDQLWYKYIYMEEMLGN 156 (677)
T ss_pred HHHHHHHHHHHHHHHhcc-ccc---chHHHHHHHHHHhhhhHhHHHHHHHHHHHh-----cchHHHHHHHHHHHHHHhcc
Confidence 567889999999999843 223 668999999999999999999999999986 47778889988888889999
Q ss_pred hHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHH
Q 016027 88 VKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLV 167 (396)
Q Consensus 88 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 167 (396)
+..|.++|++.... .|+...|++.+..-.+.+.++.|..+|+..+- +.|+..+|.-..+.-.+.|....+..+|
T Consensus 157 i~gaRqiferW~~w----~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~Vy 230 (677)
T KOG1915|consen 157 IAGARQIFERWMEW----EPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVY 230 (677)
T ss_pred cHHHHHHHHHHHcC----CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 99999999998854 68999999999999999999999999999876 4689999999999999999999999999
Q ss_pred HHHHHc-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----------------------------------
Q 016027 168 KEMRKE-GI-EPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPG---------------------------------- 211 (396)
Q Consensus 168 ~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---------------------------------- 211 (396)
+...+. |- ..+...+.++...-.++..++.|.-+|+-.++.-+.
T Consensus 231 erAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~q 310 (677)
T KOG1915|consen 231 ERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQ 310 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhH
Confidence 988775 21 112233444444444566667776666655543221
Q ss_pred ---------CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChh-------hHHH---HHHHHhccCCHHHHHHHH
Q 016027 212 ---------PTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPT-------TYNY---FFRYFSKFGKVEDAMNLY 272 (396)
Q Consensus 212 ---------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~---l~~~~~~~~~~~~a~~~~ 272 (396)
.|-.+|--.+..-...|+.+...++++..+.. ++|-.. .|.. .+-.-....+.+.+.++|
T Consensus 311 YE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vy 389 (677)
T KOG1915|consen 311 YEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVY 389 (677)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 23344444555555556666666666666654 233111 1111 111112345666666666
Q ss_pred HHHHHCCCCCChhhHHHHHHH----HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 016027 273 RKMIESGYTPDRLTYHILLKI----LCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRR 348 (396)
Q Consensus 273 ~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 348 (396)
+..++. ++....||.-+--. -.++.++..|.+++..++. .-|-..+|...|..-.+.+.++....++++.++.
T Consensus 390 q~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~ 466 (677)
T KOG1915|consen 390 QACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLEF 466 (677)
T ss_pred HHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 666553 23333444433222 2345667777777776653 3566777777777777888888888888888876
Q ss_pred CCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhccc
Q 016027 349 GLVPHYLTFKRLNDEFKKRGMTALAQKLCNVMSSVP 384 (396)
Q Consensus 349 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 384 (396)
+ +-+..+|......-...|+++.|..+|+-..+.|
T Consensus 467 ~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp 501 (677)
T KOG1915|consen 467 S-PENCYAWSKYAELETSLGDTDRARAIFELAISQP 501 (677)
T ss_pred C-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCc
Confidence 5 4466777777777777888888888888776655
No 51
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.72 E-value=1.6e-12 Score=111.44 Aligned_cols=345 Identities=10% Similarity=0.041 Sum_probs=225.2
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHH
Q 016027 34 DTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYN 113 (396)
Q Consensus 34 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 113 (396)
.+|...+..--.+|+.+....++.+....-...|+..+...|..=...|-..|..-....+..........-..-..+|+
T Consensus 441 ~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~ 520 (913)
T KOG0495|consen 441 EIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWL 520 (913)
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHh
Confidence 34444444444444444444444433332222233333344444444444444444444444443332111111234555
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 016027 114 ILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAG 193 (396)
Q Consensus 114 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 193 (396)
.-...|.+.+.++-|..+|...++. .+-+...|......--..|..++...+++++... ++.....|......+-..|
T Consensus 521 ~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~ag 598 (913)
T KOG0495|consen 521 DDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAG 598 (913)
T ss_pred hhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcC
Confidence 5556666666666666666666654 2334555665555555566777777777777766 2334445555556666778
Q ss_pred CHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHH
Q 016027 194 RFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYR 273 (396)
Q Consensus 194 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 273 (396)
+...|..++.++.+..+. +...|...+.....+.+++.|..+|.+.... .|+...|..-+......++.++|.++++
T Consensus 599 dv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllE 675 (913)
T KOG0495|consen 599 DVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLE 675 (913)
T ss_pred CcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHH
Confidence 888888888888887664 7778888888888888888888888888774 5677777777777777788889999888
Q ss_pred HHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 016027 274 KMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPH 353 (396)
Q Consensus 274 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~ 353 (396)
+.++. ++.-...|..+.+.+.+.++++.|...|..-.+. ++-.+..|-.|...--+.|.+-+|..++++..-++ +-+
T Consensus 676 e~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~ 752 (913)
T KOG0495|consen 676 EALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKN 752 (913)
T ss_pred HHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCc
Confidence 88775 2323567777888888888888888888776654 23355667777777778889999999999988766 457
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHH-Hhccchh
Q 016027 354 YLTFKRLNDEFKKRGMTALAQKLCNV-MSSVPRS 386 (396)
Q Consensus 354 ~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~ 386 (396)
...|...++.-.+.|+.+.|..++.+ +++.|.+
T Consensus 753 ~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~s 786 (913)
T KOG0495|consen 753 ALLWLESIRMELRAGNKEQAELLMAKALQECPSS 786 (913)
T ss_pred chhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc
Confidence 78899999999999999999988877 4444444
No 52
>PRK12370 invasion protein regulator; Provisional
Probab=99.71 E-value=2.5e-14 Score=129.15 Aligned_cols=251 Identities=12% Similarity=0.013 Sum_probs=150.6
Q ss_pred CCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHH---------cCChHHHHHHHHHHhhccCCCCCChHHHHHHHH
Q 016027 47 GMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCK---------QGRVKAASEYFHKRKELDQSWAPTVRVYNILLN 117 (396)
Q Consensus 47 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~ 117 (396)
+.+++|++.|+++...++. . +..+..++.++.. .+++++|...++++.+.+|. +...+..+..
T Consensus 275 ~~~~~A~~~~~~Al~ldP~--~---a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~---~~~a~~~lg~ 346 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPN--S---IAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN---NPQALGLLGL 346 (553)
T ss_pred HHHHHHHHHHHHHHhcCCc--c---HHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC---CHHHHHHHHH
Confidence 4567777777777776542 1 2345555554432 23467777777777776554 6667777777
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 016027 118 GWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEE 197 (396)
Q Consensus 118 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 197 (396)
.+...|++++|...|++..+.++. +...+..+..++...|++++|+..+++..+.. +.+...+..++..+...|++++
T Consensus 347 ~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~-P~~~~~~~~~~~~~~~~g~~ee 424 (553)
T PRK12370 347 INTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLD-PTRAAAGITKLWITYYHTGIDD 424 (553)
T ss_pred HHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHhccCHHH
Confidence 777777777777777777776432 45666777777777777777777777777763 2222233334444556777777
Q ss_pred HHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 016027 198 VSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIE 277 (396)
Q Consensus 198 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 277 (396)
|...++++....++.+...+..+..++...|++++|...+.++.... +.+....+.+...+...| +.|...++.+.+
T Consensus 425 A~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 425 AIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 77777777654332244456666777777788888887777765542 223334445555556555 366666666544
Q ss_pred CC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 016027 278 SG-YTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCR 313 (396)
Q Consensus 278 ~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 313 (396)
.. ..+....+ +...+.-.|+.+.+..+ +++.+.
T Consensus 502 ~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 502 SEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred HhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 31 11111222 33334455665555544 666554
No 53
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=4.6e-13 Score=110.76 Aligned_cols=342 Identities=13% Similarity=0.042 Sum_probs=236.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHH
Q 016027 35 TFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNI 114 (396)
Q Consensus 35 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 114 (396)
.+...+.-|.++|++++|+++|.+++... |..+..|.....+|...|+|++..+--.++.+.+|. -+..+..
T Consensus 117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~l~-----p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~---Y~KAl~R 188 (606)
T KOG0547|consen 117 ALKTKGNKFFRNKKYDEAIKYYTQAIELC-----PDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPD---YVKALLR 188 (606)
T ss_pred HHHhhhhhhhhcccHHHHHHHHHHHHhcC-----CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcH---HHHHHHH
Confidence 56677888999999999999999999983 444888999999999999999999999998887544 2445555
Q ss_pred HHHHHHhcCChhHHHHH----------------------HHH---------HHhC--CCCCChhHHHHHHHHHHcc----
Q 016027 115 LLNGWFRSKNVKDAERF----------------------WLE---------MRKE--NVTPNVVTYGTLVEGYCRL---- 157 (396)
Q Consensus 115 l~~~~~~~~~~~~a~~~----------------------~~~---------~~~~--~~~~~~~~~~~l~~~~~~~---- 157 (396)
-..++-..|++.+|+.= +++ +.+. .+-|+.....+....+...
T Consensus 189 RA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~ 268 (606)
T KOG0547|consen 189 RASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPL 268 (606)
T ss_pred HHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccccccc
Confidence 55566666665554421 111 1101 1224444333333332110
Q ss_pred ---------------------C---CHHHHHHHHHHHHHc---CCCC---C------HHHHHHHHHHHHHcCCHHHHHHH
Q 016027 158 ---------------------R---RVDRAIRLVKEMRKE---GIEP---N------AIVYNTVIDGLVEAGRFEEVSGM 201 (396)
Q Consensus 158 ---------------------~---~~~~a~~~~~~~~~~---~~~~---~------~~~~~~l~~~~~~~~~~~~a~~~ 201 (396)
+ .+..|...+.+-... .... | ..+.......+.-.|+.-.|..-
T Consensus 269 ~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d 348 (606)
T KOG0547|consen 269 FDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQED 348 (606)
T ss_pred ccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhh
Confidence 0 112222222111110 0011 1 11111122223456888889999
Q ss_pred HHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCC
Q 016027 202 MERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYT 281 (396)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 281 (396)
|+..+...+.+ ...|--+..+|...++.++-.+.|......+.. ++.+|..-.....-.+++++|..=|++....++.
T Consensus 349 ~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe 426 (606)
T KOG0547|consen 349 FDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE 426 (606)
T ss_pred HHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh
Confidence 99998876543 333777888999999999999999999998755 8889999999999999999999999999887533
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-----CCH--
Q 016027 282 PDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLV-----PHY-- 354 (396)
Q Consensus 282 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----p~~-- 354 (396)
+...|..+..+..+.+.+++++..|++.+++- +-.+.+|+.....+...++++.|.+.|+..++.... .+.
T Consensus 427 -~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF-P~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~p 504 (606)
T KOG0547|consen 427 -NAYAYIQLCCALYRQHKIAESMKTFEEAKKKF-PNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAP 504 (606)
T ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchh
Confidence 56677777777888999999999999999874 447899999999999999999999999998873211 122
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHhccchhhhh
Q 016027 355 LTFKRLNDEFKKRGMTALAQKLCNVMSSVPRSMEL 389 (396)
Q Consensus 355 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 389 (396)
.+-..++..- -.+++..|.+++++..+.++..+.
T Consensus 505 lV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~ 538 (606)
T KOG0547|consen 505 LVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQ 538 (606)
T ss_pred hhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHH
Confidence 2222333222 348999999999998887766543
No 54
>PRK12370 invasion protein regulator; Provisional
Probab=99.68 E-value=8.4e-14 Score=125.74 Aligned_cols=269 Identities=12% Similarity=0.045 Sum_probs=196.4
Q ss_pred CCchhHHHHHHHHHHH-----cCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHh---------cCChhHHHHHHHH
Q 016027 69 DSGASLFEILLDSLCK-----QGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFR---------SKNVKDAERFWLE 134 (396)
Q Consensus 69 ~~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~ 134 (396)
+.+...|...+.+... .+++++|...|+++.+.+|+ +...|..+..++.. .+++++|...+++
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~---~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~ 329 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPN---SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIK 329 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCc---cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHH
Confidence 3444545444444321 25689999999999999987 56677777665542 3458999999999
Q ss_pred HHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Q 016027 135 MRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTM 214 (396)
Q Consensus 135 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 214 (396)
..+..+. +..++..+...+...|++++|...+++..+.+ +.+...+..+..++...|++++|+..++++.+..+. +.
T Consensus 330 Al~ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~ 406 (553)
T PRK12370 330 ATELDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RA 406 (553)
T ss_pred HHhcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Ch
Confidence 9987644 77888889999999999999999999999985 556778888899999999999999999999997664 33
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 016027 215 VTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKIL 294 (396)
Q Consensus 215 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 294 (396)
..+..++..+...|++++|...+.++.+...+.++..+..+..++...|+.++|...+.++.... +.+....+.+...+
T Consensus 407 ~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~ 485 (553)
T PRK12370 407 AAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEY 485 (553)
T ss_pred hhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHH
Confidence 33444555567789999999999998876433355567788888999999999999999876652 22334455566666
Q ss_pred HhcCCHHHHHHHHHHHHHcC-CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 016027 295 CKEDKLDLAIQVSKEMKCRG-CDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRG 349 (396)
Q Consensus 295 ~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 349 (396)
...| +.+...++.+.+.. ..+....+ +-..+.-.|+.+.+..+ +++.+.+
T Consensus 486 ~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 486 CQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 7777 47777777766531 12222222 44445566777776666 7777654
No 55
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.66 E-value=5.2e-14 Score=110.47 Aligned_cols=262 Identities=13% Similarity=0.061 Sum_probs=215.3
Q ss_pred HHhcCChhHHHHHHHHHHhC---------CCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 016027 119 WFRSKNVKDAERFWLEMRKE---------NVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGL 189 (396)
Q Consensus 119 ~~~~~~~~~a~~~~~~~~~~---------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 189 (396)
+...+|+..|..+.....+. |...|-..-+.+.++|.+.|.+.+|.+.++.-++. .|-+.||..+-++|
T Consensus 189 fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY 266 (478)
T KOG1129|consen 189 FYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVY 266 (478)
T ss_pred HHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHH
Confidence 34456666666444333221 11123333477899999999999999999998887 67888999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHH
Q 016027 190 VEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAM 269 (396)
Q Consensus 190 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 269 (396)
.+..+.+.|+.++.+-++.-+ .++.....+.+.+-..++.++|.++++...+.. +.+......+...|.-.++++.|+
T Consensus 267 ~ridQP~~AL~~~~~gld~fP-~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~Al 344 (478)
T KOG1129|consen 267 QRIDQPERALLVIGEGLDSFP-FDVTYLLGQARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMAL 344 (478)
T ss_pred HHhccHHHHHHHHhhhhhcCC-chhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHH
Confidence 999999999999999988643 355556678888999999999999999999885 447778888888899999999999
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 016027 270 NLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDID--LDTSTMLIHLLCRMYKFDEASAEFEDMIR 347 (396)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 347 (396)
.+|+++.+.|+. ++..|+.+.-+|...+.++-++..|++.....-.|+ ..+|-.+....+..|++..|.+.|+-.+.
T Consensus 345 ryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~ 423 (478)
T KOG1129|consen 345 RYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT 423 (478)
T ss_pred HHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc
Confidence 999999999976 889999999999999999999999999887544333 56788888889999999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhccchh
Q 016027 348 RGLVPHYLTFKRLNDEFKKRGMTALAQKLCNVMSSVPRS 386 (396)
Q Consensus 348 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 386 (396)
.+ ..+...++.|.-.-.+.|++++|..+++...+..+.
T Consensus 424 ~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~ 461 (478)
T KOG1129|consen 424 SD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPD 461 (478)
T ss_pred cC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcc
Confidence 65 446788999988889999999999999998775443
No 56
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.65 E-value=3.7e-13 Score=108.81 Aligned_cols=199 Identities=13% Similarity=0.066 Sum_probs=116.3
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHH
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVY 112 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 112 (396)
...+..++..+...|++++|++.++++.+.. |.+..++..++..+...|++++|.+.++++....+. +...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-----p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~ 102 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-----PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN---NGDVL 102 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CHHHH
Confidence 3456666777777777777777777666543 555666666777777777777777777766665332 44556
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCC-CCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 016027 113 NILLNGWFRSKNVKDAERFWLEMRKENV-TPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVE 191 (396)
Q Consensus 113 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 191 (396)
..+...+...|++++|...+++...... ......+..+..++...|++++|.+.+++..+.. +.+...+..+...+..
T Consensus 103 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~ 181 (234)
T TIGR02521 103 NNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYL 181 (234)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHH
Confidence 6666666666777777777766655321 1123344455555666666666666666655542 2234455555555666
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 016027 192 AGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMI 241 (396)
Q Consensus 192 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 241 (396)
.|++++|...+++..... +.+...+..++..+...|+.++|..+.+.+.
T Consensus 182 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 182 RGQYKDARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 666666666666555542 2234444455555555566666555555444
No 57
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=2.4e-12 Score=108.47 Aligned_cols=273 Identities=10% Similarity=0.064 Sum_probs=186.3
Q ss_pred ChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 016027 108 TVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVID 187 (396)
Q Consensus 108 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 187 (396)
+......-..-+....++.+..++++.+.+. .++....+..-|.++...|+..+-..+=.++.+. .|..+.+|-++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHH
Confidence 4455555566667777888888888877766 3456666666666777777777777666677666 3556677777777
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHH
Q 016027 188 GLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVED 267 (396)
Q Consensus 188 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 267 (396)
.|...|+..+|.+.|.+....++. -...|-.+...|.-.|..++|+..+....+. ++-..--+-.+..-|.+.++.+.
T Consensus 321 YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kL 398 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKL 398 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHH
Confidence 777778888888888877664432 3456777788888888888888877776654 11122223344555677778888
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC--CChhhHHHHHHHHHhcCChhHHHHH
Q 016027 268 AMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCR----GCD--IDLDTSTMLIHLLCRMYKFDEASAE 341 (396)
Q Consensus 268 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~~~~~~~~l~~~~~~~~~~~~a~~~ 341 (396)
|.++|.+..... +-|+...+.+.-.....+.+.+|..+|+..+.. +.+ .-..+++.|.++|.+.+.+++|+..
T Consensus 399 Ae~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~ 477 (611)
T KOG1173|consen 399 AEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY 477 (611)
T ss_pred HHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence 888887776653 336667777776666677788888877776521 100 1234567777888888888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhccchh
Q 016027 342 FEDMIRRGLVPHYLTFKRLNDEFKKRGMTALAQKLCNVMSSVPRS 386 (396)
Q Consensus 342 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 386 (396)
+++.+... +-+..++.++.-.|...|+++.|+..|++.....+.
T Consensus 478 ~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~ 521 (611)
T KOG1173|consen 478 YQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPD 521 (611)
T ss_pred HHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCc
Confidence 88877754 446777777777777888888888888776554443
No 58
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.64 E-value=9.3e-12 Score=108.94 Aligned_cols=299 Identities=15% Similarity=0.153 Sum_probs=209.6
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHH
Q 016027 34 DTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYN 113 (396)
Q Consensus 34 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 113 (396)
+.+.....++...|++++|++.++..... +.....+....+..+.+.|+.++|..++..+...+|. |...|.
T Consensus 5 E~lLY~~~il~e~g~~~~AL~~L~~~~~~-----I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd---n~~Yy~ 76 (517)
T PF12569_consen 5 ELLLYKNSILEEAGDYEEALEHLEKNEKQ-----ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD---NYDYYR 76 (517)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhhhhh-----CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---cHHHHH
Confidence 34555667788999999999999876664 4666777888899999999999999999999988654 666666
Q ss_pred HHHHHHHhc-----CChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHH-HHHHHHHHHHHcCCCCCHHHHHHHHH
Q 016027 114 ILLNGWFRS-----KNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVD-RAIRLVKEMRKEGIEPNAIVYNTVID 187 (396)
Q Consensus 114 ~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~ 187 (396)
.+..+..-. .+.+....+|+++...- |...+...+.-.+.....+. .+..++..+...|+|+ +|..+-.
T Consensus 77 ~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~ 151 (517)
T PF12569_consen 77 GLEEALGLQLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKP 151 (517)
T ss_pred HHHHHHhhhcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHH
Confidence 666665222 35677888888887653 34444333333333323333 3566777777888543 4555555
Q ss_pred HHHHcCCHHHHHHHHHHHHhc----C----------CCCchh--hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhh
Q 016027 188 GLVEAGRFEEVSGMMERFLVC----E----------PGPTMV--TYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTT 251 (396)
Q Consensus 188 ~~~~~~~~~~a~~~~~~~~~~----~----------~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 251 (396)
.|......+-..+++...... + ..|+.. ++..+...|...|++++|++.++..++..+. .+..
T Consensus 152 Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~el 230 (517)
T PF12569_consen 152 LYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVEL 230 (517)
T ss_pred HHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHH
Confidence 565555555555555554322 1 123332 4456677888899999999999999887422 4778
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhH--------H
Q 016027 252 YNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTS--------T 323 (396)
Q Consensus 252 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--------~ 323 (396)
|..-.+.+-+.|++.+|.+.++..+..+.. |...-+..+..+.+.|+.++|.+++....+.+..|....+ .
T Consensus 231 y~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~ 309 (517)
T PF12569_consen 231 YMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFET 309 (517)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHH
Confidence 888888999999999999999999887644 7777777788888999999999999888776543332222 3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHH
Q 016027 324 MLIHLLCRMYKFDEASAEFEDMIR 347 (396)
Q Consensus 324 ~l~~~~~~~~~~~~a~~~~~~~~~ 347 (396)
....+|.+.|++..|++.|..+.+
T Consensus 310 e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 310 ECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHH
Confidence 456788889999888887766653
No 59
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.63 E-value=5.3e-13 Score=99.88 Aligned_cols=198 Identities=15% Similarity=0.012 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHH
Q 016027 35 TFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNI 114 (396)
Q Consensus 35 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 114 (396)
+...++-.|.+.|+...|..-++++++.+ |.+..++..+...|.+.|+.+.|.+.|+++.+..|+ +..+.|.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-----Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~---~GdVLNN 108 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-----PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN---NGDVLNN 108 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC---ccchhhh
Confidence 44445555555555555555555555554 445555555555555555555555555555554433 4455555
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCC-CCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 016027 115 LLNGWFRSKNVKDAERFWLEMRKEN-VTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAG 193 (396)
Q Consensus 115 l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 193 (396)
....++..|++++|...|++..... ..--..+|..+.-+..+.|+.+.|...|++.++.. +....+...+.......|
T Consensus 109 YG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~ 187 (250)
T COG3063 109 YGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAG 187 (250)
T ss_pred hhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcc
Confidence 5555555555555555555555431 11123345555555555555555555555555542 223334444555555555
Q ss_pred CHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 016027 194 RFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMIS 242 (396)
Q Consensus 194 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 242 (396)
++-.|...++.....+. ++..+....|..-...|+.+.+.+.=.++.+
T Consensus 188 ~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 188 DYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred cchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 55555555555554444 4555555555555555555555444444443
No 60
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.63 E-value=9.6e-13 Score=109.09 Aligned_cols=221 Identities=18% Similarity=0.121 Sum_probs=114.7
Q ss_pred ccCchhHHHHHHHHhCCCC-CCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcC
Q 016027 8 AKEFDSAWCLLLDKIGGHE-VPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQG 86 (396)
Q Consensus 8 ~g~~~~A~~~~~~~~~~~~-~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 86 (396)
.++.+.++..+.+++.... .|+ .....|..++..+...|++++|+..|+++.+.. |.++.+|+.++..+...|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~-~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-----P~~~~a~~~lg~~~~~~g 112 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDE-ERAQLHYERGVLYDSLGLRALARNDFSQALALR-----PDMADAYNYLGIYLTQAG 112 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcH-hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-----CCCHHHHHHHHHHHHHCC
Confidence 3455556666666664322 111 113456666666666677777776666666654 556666666666666777
Q ss_pred ChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHH
Q 016027 87 RVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRL 166 (396)
Q Consensus 87 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 166 (396)
++++|.+.|+++.+.+|+ +..+|..+..++...|++++|.+.|+...+.. |+..............+++++|...
T Consensus 113 ~~~~A~~~~~~Al~l~P~---~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~ 187 (296)
T PRK11189 113 NFDAAYEAFDSVLELDPT---YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKEN 187 (296)
T ss_pred CHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHH
Confidence 777777777666665444 45566666666666667777776666666543 2222111222223344566666666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCC---CchhhHHHHHHHHHhcCChHHHHHHHHHH
Q 016027 167 VKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVC---EPG---PTMVTYTSLVKGYCKAGDLEGASKILKMM 240 (396)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 240 (396)
+++..... .++...+ .+ .....|+...+ ..+..+.+. .+. .....|..+...+.+.|++++|...|+..
T Consensus 188 l~~~~~~~-~~~~~~~-~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~A 262 (296)
T PRK11189 188 LKQRYEKL-DKEQWGW-NI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLA 262 (296)
T ss_pred HHHHHhhC-CccccHH-HH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 65544321 2222111 11 12223443332 223332211 000 12235555566666666666666666666
Q ss_pred HHCC
Q 016027 241 ISRG 244 (396)
Q Consensus 241 ~~~~ 244 (396)
.+.+
T Consensus 263 l~~~ 266 (296)
T PRK11189 263 LANN 266 (296)
T ss_pred HHhC
Confidence 5543
No 61
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.62 E-value=1.4e-12 Score=105.42 Aligned_cols=203 Identities=16% Similarity=0.155 Sum_probs=130.0
Q ss_pred CCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHH
Q 016027 69 DSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYG 148 (396)
Q Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 148 (396)
......+..++..+...|++++|.+.++++...+|. +...+..+...+...|++++|.+.+++..+.... +...+.
T Consensus 28 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~ 103 (234)
T TIGR02521 28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPD---DYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLN 103 (234)
T ss_pred CcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHH
Confidence 334566777777888888888888888877765433 4566777777777778888888888777765432 455666
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhc
Q 016027 149 TLVEGYCRLRRVDRAIRLVKEMRKEGI-EPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKA 227 (396)
Q Consensus 149 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 227 (396)
.+...+...|++++|.+.+++..+... +.....+..+..++...|++++|...+.+.....+. +...+..+...+...
T Consensus 104 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~ 182 (234)
T TIGR02521 104 NYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLR 182 (234)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHc
Confidence 677777777777777777777765421 122344555566666677777777777766665332 345556666666666
Q ss_pred CChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 016027 228 GDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIE 277 (396)
Q Consensus 228 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 277 (396)
|++++|...+++.... .+.+...+..+...+...|+.++|..+.+.+..
T Consensus 183 ~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 183 GQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred CCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 6666666666666654 233444555555566666666666666555443
No 62
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.61 E-value=1.9e-13 Score=107.41 Aligned_cols=231 Identities=12% Similarity=0.013 Sum_probs=154.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHH
Q 016027 76 EILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYC 155 (396)
Q Consensus 76 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 155 (396)
..++.+|.+.|-+.+|.+-|+...+. .|-+.+|..|...|.+-+++..|+.+|.+-++. .+-++.....+.+.+-
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q----~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ----FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc----CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHH
Confidence 34667777777777777777766553 345666777777777777777777777766654 2334444455666777
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHH
Q 016027 156 RLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASK 235 (396)
Q Consensus 156 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 235 (396)
..++.++|.++|+...+.. +.+.+....+...|.-.++.+.|+.+|+++++.|.. ++..|+.+.-+|.-.++++-++.
T Consensus 302 am~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred HHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHH
Confidence 7777777777777776653 445555555666666677777777777777777764 66777777777777777777777
Q ss_pred HHHHHHHCCCCCC--hhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 016027 236 ILKMMISRGFLPS--PTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCR 313 (396)
Q Consensus 236 ~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 313 (396)
.|......-..|+ ..+|-.+....+..|++..|.+.|+-....+. -+...++.|.-.-.+.|++++|..++......
T Consensus 380 sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~-~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 380 SFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA-QHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc-chHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 7777665433232 34566666666777777777777777666542 25566777777777777777777777777665
Q ss_pred C
Q 016027 314 G 314 (396)
Q Consensus 314 ~ 314 (396)
.
T Consensus 459 ~ 459 (478)
T KOG1129|consen 459 M 459 (478)
T ss_pred C
Confidence 3
No 63
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.61 E-value=9.6e-12 Score=108.85 Aligned_cols=300 Identities=17% Similarity=0.166 Sum_probs=216.1
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHH
Q 016027 73 SLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVE 152 (396)
Q Consensus 73 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 152 (396)
++.......+...|++++|++.++.-... +..........+..+.+.|+.++|..+|..++..++. |..-|..+..
T Consensus 5 E~lLY~~~il~e~g~~~~AL~~L~~~~~~---I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~ 80 (517)
T PF12569_consen 5 ELLLYKNSILEEAGDYEEALEHLEKNEKQ---ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEE 80 (517)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhhhhh---CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHH
Confidence 34445567778999999999999886542 2334556678889999999999999999999998643 5555556665
Q ss_pred HHHcc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhcCCCCchhhHHHHHHHHHh
Q 016027 153 GYCRL-----RRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRF-EEVSGMMERFLVCEPGPTMVTYTSLVKGYCK 226 (396)
Q Consensus 153 ~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 226 (396)
+..-. .+.+...++|+++... -|.......+.-.+.....+ ..+..++..+...|++ .+|+.+-..|..
T Consensus 81 ~~g~~~~~~~~~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d 155 (517)
T PF12569_consen 81 ALGLQLQLSDEDVEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKD 155 (517)
T ss_pred HHhhhcccccccHHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcC
Confidence 55222 3567788899988776 34444443333222222223 3455667777777764 367777777776
Q ss_pred cCChHHHHHHHHHHHHC----C----------CCCCh--hhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 016027 227 AGDLEGASKILKMMISR----G----------FLPSP--TTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHIL 290 (396)
Q Consensus 227 ~~~~~~a~~~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 290 (396)
..+.+-..+++...... + -+|+. .++..+...|...|++++|+.++++.++..+ ..+..|..-
T Consensus 156 ~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htP-t~~ely~~K 234 (517)
T PF12569_consen 156 PEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTP-TLVELYMTK 234 (517)
T ss_pred hhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC-CcHHHHHHH
Confidence 66655566666665432 1 12333 3556678889999999999999999998742 246788888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH------HH--HHHHH
Q 016027 291 LKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYL------TF--KRLND 362 (396)
Q Consensus 291 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~------~~--~~l~~ 362 (396)
.+.+-+.|++.+|.+.++.+...... |...-+..+..+.+.|+.++|.+++....+.+..|-.. .| .....
T Consensus 235 arilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~ 313 (517)
T PF12569_consen 235 ARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAE 313 (517)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHH
Confidence 99999999999999999999988765 77888888999999999999999999998766433221 23 34567
Q ss_pred HHHHcCCchHHHHHHHHHhcc
Q 016027 363 EFKKRGMTALAQKLCNVMSSV 383 (396)
Q Consensus 363 ~~~~~g~~~~A~~~~~~~~~~ 383 (396)
+|.+.|++..|++.|..+.+.
T Consensus 314 a~~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 314 AYLRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred HHHHHhhHHHHHHHHHHHHHH
Confidence 899999999999988887653
No 64
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.60 E-value=6.4e-11 Score=101.62 Aligned_cols=364 Identities=13% Similarity=0.140 Sum_probs=187.0
Q ss_pred hccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcC
Q 016027 7 KAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQG 86 (396)
Q Consensus 7 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 86 (396)
..+++...+...+.+++. .|. ..+++...+-.+...|+-++|....+...+.+ +.+...|..++-.+....
T Consensus 19 E~kQYkkgLK~~~~iL~k--~~e--HgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-----~~S~vCwHv~gl~~R~dK 89 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKK--FPE--HGESLAMKGLTLNCLGKKEEAYELVRLGLRND-----LKSHVCWHVLGLLQRSDK 89 (700)
T ss_pred HHHHHHhHHHHHHHHHHh--CCc--cchhHHhccchhhcccchHHHHHHHHHHhccC-----cccchhHHHHHHHHhhhh
Confidence 345666666666666663 333 13466666666666777777777766666643 455566666666666667
Q ss_pred ChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHH
Q 016027 87 RVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRL 166 (396)
Q Consensus 87 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 166 (396)
++++|++.|+.+...+++ |...|..+.-.-++.++++........+.+..+ .....|..++.++.-.|++..|..+
T Consensus 90 ~Y~eaiKcy~nAl~~~~d---N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~-~~ra~w~~~Avs~~L~g~y~~A~~i 165 (700)
T KOG1156|consen 90 KYDEAIKCYRNALKIEKD---NLQILRDLSLLQIQMRDYEGYLETRNQLLQLRP-SQRASWIGFAVAQHLLGEYKMALEI 165 (700)
T ss_pred hHHHHHHHHHHHHhcCCC---cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777665443 666666666666666666666666666655421 1344556666666666666666666
Q ss_pred HHHHHHcC-CCCCHHHHHHHH------HHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHH
Q 016027 167 VKEMRKEG-IEPNAIVYNTVI------DGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKM 239 (396)
Q Consensus 167 ~~~~~~~~-~~~~~~~~~~l~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 239 (396)
++...+.. ..|+...+.... ......|..+.|.+.+......-. .....-..-...+.+.+++++|..++..
T Consensus 166 l~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~-Dkla~~e~ka~l~~kl~~lEeA~~~y~~ 244 (700)
T KOG1156|consen 166 LEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIV-DKLAFEETKADLLMKLGQLEEAVKVYRR 244 (700)
T ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHH-HHHHHhhhHHHHHHHHhhHHhHHHHHHH
Confidence 66665543 234444433221 223345555555555544332211 1112222334455555666666666666
Q ss_pred HHHCCCCCChhhHHHHHH-HHhccCCHHHHH-HHHH----------------------------------HHHHCCCCCC
Q 016027 240 MISRGFLPSPTTYNYFFR-YFSKFGKVEDAM-NLYR----------------------------------KMIESGYTPD 283 (396)
Q Consensus 240 ~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~-~~~~----------------------------------~~~~~~~~~~ 283 (396)
+... .||...|...+. ++.+..+..++. .+|. ...+.|++
T Consensus 245 Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p-- 320 (700)
T KOG1156|consen 245 LLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVP-- 320 (700)
T ss_pred HHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCC--
Confidence 6554 233333332222 221111212222 2222 22222222
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHH----H----cC----------CCCChhhHH--HHHHHHHhcCChhHHHHHHH
Q 016027 284 RLTYHILLKILCKEDKLDLAIQVSKEMK----C----RG----------CDIDLDTST--MLIHLLCRMYKFDEASAEFE 343 (396)
Q Consensus 284 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~----~~----------~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~ 343 (396)
.++..+...|-.....+ +++++. . .| -+|....|. .++..+-+.|+++.|...++
T Consensus 321 -~vf~dl~SLyk~p~k~~----~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId 395 (700)
T KOG1156|consen 321 -SVFKDLRSLYKDPEKVA----FLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYID 395 (700)
T ss_pred -chhhhhHHHHhchhHhH----HHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 11222222221111111 222211 0 00 133333333 34555666777777777777
Q ss_pred HHHHCCCCCCH-HHHHHHHHHHHHcCCchHHHHHHHHHhccchhhhhhhhhcC
Q 016027 344 DMIRRGLVPHY-LTFKRLNDEFKKRGMTALAQKLCNVMSSVPRSMELLDSRCK 395 (396)
Q Consensus 344 ~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 395 (396)
..++. .|+. ..|..-.+.+.+.|+.++|..++++.++.+.++..+|+.|.
T Consensus 396 ~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcA 446 (700)
T KOG1156|consen 396 LAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCA 446 (700)
T ss_pred HHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHH
Confidence 66653 4543 23444445666777777777777777777777777776664
No 65
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.57 E-value=9.9e-12 Score=93.17 Aligned_cols=207 Identities=16% Similarity=0.093 Sum_probs=172.4
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHH
Q 016027 73 SLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVE 152 (396)
Q Consensus 73 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 152 (396)
.+...|+..|...|+...|.+-++++.+.+|. +..+|..+...|.+.|+.+.|.+-|++..+..+. +....|....
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs---~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~ 111 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPS---YYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc---cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhH
Confidence 34566888999999999999999999988765 7788999999999999999999999999887544 7778899999
Q ss_pred HHHccCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChH
Q 016027 153 GYCRLRRVDRAIRLVKEMRKEG-IEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLE 231 (396)
Q Consensus 153 ~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 231 (396)
.+|..|.+++|.+.|++..... +.....+|..+.-+..+.|+.+.|...|++.++..+. ...+...+.....+.|++-
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~ 190 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYA 190 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccch
Confidence 9999999999999999988763 2334568888888899999999999999999987664 5567778888899999999
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhH
Q 016027 232 GASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTY 287 (396)
Q Consensus 232 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 287 (396)
.|...++.....+. ++..+....|+.-...|+.+.+-++=..+... -|...-+
T Consensus 191 ~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~--fP~s~e~ 243 (250)
T COG3063 191 PARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL--FPYSEEY 243 (250)
T ss_pred HHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHH
Confidence 99999999888865 78888888888888999988888777666654 3444433
No 66
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=2.3e-11 Score=102.67 Aligned_cols=286 Identities=13% Similarity=0.079 Sum_probs=160.4
Q ss_pred CCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHH
Q 016027 69 DSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYG 148 (396)
Q Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 148 (396)
..++.+......-+...+++.+-.++++...+.+| +....+..-|.++...|+..+-..+=.++...- +-.+.+|-
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dp---fh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~ 316 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKDP---FHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWF 316 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCC---CCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchh
Confidence 44455555556666666666666666666666443 233444444556666666666666656665552 33555666
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcC
Q 016027 149 TLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAG 228 (396)
Q Consensus 149 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 228 (396)
.+.-.|.-.|...+|.++|.+....+ +.-...|..+...|+-.|..++|+..+..+.+.-+. ....+--+.--|.+.+
T Consensus 317 aVg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G-~hlP~LYlgmey~~t~ 394 (611)
T KOG1173|consen 317 AVGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG-CHLPSLYLGMEYMRTN 394 (611)
T ss_pred hHHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC-CcchHHHHHHHHHHhc
Confidence 66666666666666666666655442 112334556666666666666666666655543211 1112222333455666
Q ss_pred ChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHC--CC---C-CChhhHHHHHHHHHhcCCHHH
Q 016027 229 DLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIES--GY---T-PDRLTYHILLKILCKEDKLDL 302 (396)
Q Consensus 229 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~---~-~~~~~~~~l~~~~~~~~~~~~ 302 (396)
+.+.|.+.|.+..... +.|+...+.+.-.....+.+.+|..+|+..... .+ . .-..+++.|..+|.+.+.+++
T Consensus 395 n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~e 473 (611)
T KOG1173|consen 395 NLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEE 473 (611)
T ss_pred cHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHH
Confidence 6666666666666553 335556666665555566666666666655421 00 0 122345666666666666666
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 016027 303 AIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEF 364 (396)
Q Consensus 303 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 364 (396)
|+..+++.+...++ +..++.++.-.|...|+++.|.+.|.+.+. +.|+..+...++..+
T Consensus 474 AI~~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 474 AIDYYQKALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLA 532 (611)
T ss_pred HHHHHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHH
Confidence 66666666655433 666666666666666666666666666654 345554444444433
No 67
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.57 E-value=2.5e-10 Score=100.02 Aligned_cols=376 Identities=16% Similarity=0.071 Sum_probs=251.6
Q ss_pred hhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHH
Q 016027 4 VLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLC 83 (396)
Q Consensus 4 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 83 (396)
++...|+++.+.+.|++.+..-. . ....|+.+...+...|.-..|+.+++....... .|+++..+......|.
T Consensus 332 al~~~g~f~~lae~fE~~~~~~~-~---~~e~w~~~als~saag~~s~Av~ll~~~~~~~~---~ps~~s~~Lmasklc~ 404 (799)
T KOG4162|consen 332 ALSRCGQFEVLAEQFEQALPFSF-G---EHERWYQLALSYSAAGSDSKAVNLLRESLKKSE---QPSDISVLLMASKLCI 404 (799)
T ss_pred HHHHHHHHHHHHHHHHHHhHhhh-h---hHHHHHHHHHHHHHhccchHHHHHHHhhccccc---CCCcchHHHHHHHHHH
Confidence 45677888888888888876321 1 256888888888889988888888887766531 2455555555555555
Q ss_pred H-cCChHHHHHHHHHHhhccCCC--CCChHHHHHHHHHHHhc-----------CChhHHHHHHHHHHhCCCCCChhHHHH
Q 016027 84 K-QGRVKAASEYFHKRKELDQSW--APTVRVYNILLNGWFRS-----------KNVKDAERFWLEMRKENVTPNVVTYGT 149 (396)
Q Consensus 84 ~-~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~ 149 (396)
+ .+..++++.+-.++...-.+. ......|..+.-+|... ....++++.+++..+.+.. |+.....
T Consensus 405 e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~-dp~~if~ 483 (799)
T KOG4162|consen 405 ERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT-DPLVIFY 483 (799)
T ss_pred hchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-CchHHHH
Confidence 4 466777777777666521111 11233444444444321 1245777888888776533 4444445
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------------------
Q 016027 150 LVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPG------------------ 211 (396)
Q Consensus 150 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------------------ 211 (396)
+.--|+..++.+.|.+..++..+.+-..+...|..+.-.+...+++.+|+.+.+.....-..
T Consensus 484 lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~ 563 (799)
T KOG4162|consen 484 LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDR 563 (799)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccH
Confidence 55567788899999999999888855678888888888888889999999888877653221
Q ss_pred -CchhhHHHHHHHHHh-----------------------cCChHHHHHHHHHHH--------HCC---------CCCCh-
Q 016027 212 -PTMVTYTSLVKGYCK-----------------------AGDLEGASKILKMMI--------SRG---------FLPSP- 249 (396)
Q Consensus 212 -~~~~~~~~l~~~~~~-----------------------~~~~~~a~~~~~~~~--------~~~---------~~~~~- 249 (396)
....+...++..+-. .++..++.+....+. ..+ ..|+.
T Consensus 564 e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~ 643 (799)
T KOG4162|consen 564 EEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPD 643 (799)
T ss_pred HHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCC
Confidence 001122222222210 001111111111110 000 01111
Q ss_pred -------hhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhH
Q 016027 250 -------TTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTS 322 (396)
Q Consensus 250 -------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 322 (396)
..|......+.+.++.++|...+.+..... +.....|......+...|..++|.+.|......++. ++.+.
T Consensus 644 ~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~-hv~s~ 721 (799)
T KOG4162|consen 644 SLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPD-HVPSM 721 (799)
T ss_pred chHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCC-CcHHH
Confidence 123445556777788888887777766643 335566777777888899999999999999887654 67888
Q ss_pred HHHHHHHHhcCChhHHHH--HHHHHHHCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhccchhhhhh
Q 016027 323 TMLIHLLCRMYKFDEASA--EFEDMIRRGLVPHYLTFKRLNDEFKKRGMTALAQKLCNVMSSVPRSMELL 390 (396)
Q Consensus 323 ~~l~~~~~~~~~~~~a~~--~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 390 (396)
.++..++.+.|+..-|.. ++.++.+.+ +.+...|..+...+.+.|+.++|...|....+...+.++.
T Consensus 722 ~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV~ 790 (799)
T KOG4162|consen 722 TALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPVL 790 (799)
T ss_pred HHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCcc
Confidence 999999999999888888 999999977 5688999999999999999999999999988887776653
No 68
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=2.1e-10 Score=93.38 Aligned_cols=310 Identities=10% Similarity=0.009 Sum_probs=221.6
Q ss_pred CCCchhHHHHHHHHHHH--cCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChh
Q 016027 68 FDSGASLFEILLDSLCK--QGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVV 145 (396)
Q Consensus 68 ~~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 145 (396)
.+++.......+.+++. .++...|...+-.+... ..++-|+.....+..++...|+.++|+..|++....++- +..
T Consensus 190 ~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~-~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~ 267 (564)
T KOG1174|consen 190 VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDN-TTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVE 267 (564)
T ss_pred cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhh-ccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhh
Confidence 44444445555555544 45556666655544432 345557888899999999999999999999988765321 333
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHH
Q 016027 146 TYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYC 225 (396)
Q Consensus 146 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 225 (396)
......-.+...|+++....+...+.... +-+...|..-+......++++.|+.+-++.++.++ .+...+-.-...+.
T Consensus 268 ~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~-r~~~alilKG~lL~ 345 (564)
T KOG1174|consen 268 AMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEP-RNHEALILKGRLLI 345 (564)
T ss_pred hHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCc-ccchHHHhccHHHH
Confidence 44444555667888888888888876653 23344444444555667889999999999888655 36677777778888
Q ss_pred hcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHH-HHHH-hcCCHHHH
Q 016027 226 KAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILL-KILC-KEDKLDLA 303 (396)
Q Consensus 226 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~~~~~~a 303 (396)
..+++++|.-.|....... +-+...|.-|+..|...|.+.+|..+-+...+. +.-+..+...+. ..+. ....-++|
T Consensus 346 ~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKA 423 (564)
T KOG1174|consen 346 ALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKA 423 (564)
T ss_pred hccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHH
Confidence 9999999999999888764 347889999999999999999998877776554 233555555542 2222 23345788
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcc
Q 016027 304 IQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFKKRGMTALAQKLCNVMSSV 383 (396)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 383 (396)
.+++++..+..+. -....+.+...+...|+.+.++.++++.+.. .||....+.|.+.+...+.+++|...|....+.
T Consensus 424 Kkf~ek~L~~~P~-Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 424 KKFAEKSLKINPI-YTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHHHhhhccCCc-cHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 8888887765322 3455677778888999999999999988863 688888899999999999999999999886665
Q ss_pred chh
Q 016027 384 PRS 386 (396)
Q Consensus 384 ~~~ 386 (396)
++.
T Consensus 501 dP~ 503 (564)
T KOG1174|consen 501 DPK 503 (564)
T ss_pred Ccc
Confidence 444
No 69
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.55 E-value=8.2e-11 Score=93.90 Aligned_cols=366 Identities=15% Similarity=0.094 Sum_probs=190.0
Q ss_pred hhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHH
Q 016027 5 LAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCK 84 (396)
Q Consensus 5 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 84 (396)
+...+++..|+.+++-....+.... ..+-.-++.++...|++++|...+..+...+ .++..++..|.-++.-
T Consensus 32 fls~rDytGAislLefk~~~~~EEE---~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-----~~~~el~vnLAcc~Fy 103 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEE---DSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-----DAPAELGVNLACCKFY 103 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhh---HHHHHHHHHHHHhhccHHHHHHHHHHHhccC-----CCCcccchhHHHHHHH
Confidence 3445666666666655543322111 1233335566666677777776666665543 4444555556555556
Q ss_pred cCChHHHHHHHHHHhhccC-----------------------CCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 016027 85 QGRVKAASEYFHKRKELDQ-----------------------SWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVT 141 (396)
Q Consensus 85 ~~~~~~A~~~~~~~~~~~~-----------------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 141 (396)
.|.+.+|..+-.++.+..- ....+..---+|.+.....-.+++|+++|......+
T Consensus 104 Lg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn-- 181 (557)
T KOG3785|consen 104 LGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDN-- 181 (557)
T ss_pred HHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--
Confidence 6666666665544332100 000011122233333334445777777777776642
Q ss_pred CChhHHHH-HHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc--CCH-----------------------
Q 016027 142 PNVVTYGT-LVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEA--GRF----------------------- 195 (396)
Q Consensus 142 ~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~----------------------- 195 (396)
|.-...|. +.-+|.+..-++-+.++++-.++. ++.++...+..+....+. |+.
T Consensus 182 ~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~ 260 (557)
T KOG3785|consen 182 PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLC 260 (557)
T ss_pred hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHH
Confidence 33334433 334455555566666665555544 122222222222111111 111
Q ss_pred ----------HHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHH-----------------------
Q 016027 196 ----------EEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMIS----------------------- 242 (396)
Q Consensus 196 ----------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----------------------- 242 (396)
+.|++++-.+.. .-+.....++-.|.+.++..+|..+.+++.-
T Consensus 261 rHNLVvFrngEgALqVLP~L~~----~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSr 336 (557)
T KOG3785|consen 261 RHNLVVFRNGEGALQVLPSLMK----HIPEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSR 336 (557)
T ss_pred HcCeEEEeCCccHHHhchHHHh----hChHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcH
Confidence 111111111111 0122333444455555555555555444321
Q ss_pred ---------------CCCCC-ChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 016027 243 ---------------RGFLP-SPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQV 306 (396)
Q Consensus 243 ---------------~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 306 (396)
++..- +...-..+...+.-..++++++.++..+...-..-|...+ .+.++.+..|++.+|.++
T Consensus 337 eHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEel 415 (557)
T KOG3785|consen 337 EHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEEL 415 (557)
T ss_pred HHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHH
Confidence 11110 1111222333334445566666666666554333333434 467888889999999999
Q ss_pred HHHHHHcCCCCChhhH-HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHHcCCchHHHHHHHHHhccc
Q 016027 307 SKEMKCRGCDIDLDTS-TMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLT-FKRLNDEFKKRGMTALAQKLCNVMSSVP 384 (396)
Q Consensus 307 ~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 384 (396)
|-++....++ |..+| ..|.++|.+.++++.|+.++-++ +-+.+..+ +..+.+.|.+.|.+=-|-+.|+.+...+
T Consensus 416 f~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~---~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lD 491 (557)
T KOG3785|consen 416 FIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKT---NTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILD 491 (557)
T ss_pred HhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhc---CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccC
Confidence 9888765555 55555 45668889999999887775444 32333333 3344567888899888889999988888
Q ss_pred hhhhhh
Q 016027 385 RSMELL 390 (396)
Q Consensus 385 ~~~~~~ 390 (396)
++|+..
T Consensus 492 P~pEnW 497 (557)
T KOG3785|consen 492 PTPENW 497 (557)
T ss_pred CCcccc
Confidence 777653
No 70
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=1.9e-10 Score=93.61 Aligned_cols=293 Identities=12% Similarity=0.058 Sum_probs=225.2
Q ss_pred HHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhc
Q 016027 43 YARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRS 122 (396)
Q Consensus 43 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 122 (396)
.+-.++...|.+.+-.+.... .++.+......++..+...|+..+|...|++....+|. ++.........+.+.
T Consensus 206 q~~~~~hs~a~~t~l~le~~~---~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy---~i~~MD~Ya~LL~~e 279 (564)
T KOG1174|consen 206 QMFNFKHSDASQTFLMLHDNT---TLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD---NVEAMDLYAVLLGQE 279 (564)
T ss_pred HHHhcccchhhhHHHHHHhhc---cCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh---hhhhHHHHHHHHHhc
Confidence 344566666666666555543 45889999999999999999999999999999887654 333333344446778
Q ss_pred CChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 016027 123 KNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMM 202 (396)
Q Consensus 123 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 202 (396)
|+++....+...+.... .-+...|-.-+.......+++.|+.+-++.++.. +.+...+..-...+...|+.++|.-.|
T Consensus 280 g~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaF 357 (564)
T KOG1174|consen 280 GGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAF 357 (564)
T ss_pred cCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHH
Confidence 99999888888877642 2344555555566667889999999999888764 345556666668889999999999999
Q ss_pred HHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHH-HHH-hccCCHHHHHHHHHHHHHCCC
Q 016027 203 ERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFF-RYF-SKFGKVEDAMNLYRKMIESGY 280 (396)
Q Consensus 203 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~-~~~~~~~~a~~~~~~~~~~~~ 280 (396)
+......+ .+...|..|+..|...|.+.+|.-+-+...+. ++.+..+...+. ..+ .....-++|.++++.....+
T Consensus 358 R~Aq~Lap-~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~- 434 (564)
T KOG1174|consen 358 RTAQMLAP-YRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN- 434 (564)
T ss_pred HHHHhcch-hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccC-
Confidence 99887644 47889999999999999999999888777665 344666666553 222 23334578999998877753
Q ss_pred CCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 016027 281 TPD-RLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRG 349 (396)
Q Consensus 281 ~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 349 (396)
|+ ....+.+...+...|..+.++.++++.... .||....+.|...+...+.+.+|++.|...++.+
T Consensus 435 -P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 435 -PIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred -CccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 44 456777888899999999999999998865 6799999999999999999999999999998865
No 71
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=1.4e-10 Score=97.49 Aligned_cols=329 Identities=16% Similarity=0.126 Sum_probs=205.1
Q ss_pred hhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHH
Q 016027 4 VLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLC 83 (396)
Q Consensus 4 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 83 (396)
..+..|+++.|+..|-+++.. .|. +...|..=..+|...|++++|++--.+..+.. |.-+..|...+.++.
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l--~p~--nhvlySnrsaa~a~~~~~~~al~da~k~~~l~-----p~w~kgy~r~Gaa~~ 81 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIML--SPT--NHVLYSNRSAAYASLGSYEKALKDATKTRRLN-----PDWAKGYSRKGAALF 81 (539)
T ss_pred hhcccccHHHHHHHHHHHHcc--CCC--ccchhcchHHHHHHHhhHHHHHHHHHHHHhcC-----CchhhHHHHhHHHHH
Confidence 456789999999999999985 343 36678888999999999999999988888885 888899999999999
Q ss_pred HcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcC---C------------------------------------
Q 016027 84 KQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSK---N------------------------------------ 124 (396)
Q Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~------------------------------------ 124 (396)
-.|++++|+..|.+-.+.+|. |...+..+..++.... +
T Consensus 82 ~lg~~~eA~~ay~~GL~~d~~---n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~ 158 (539)
T KOG0548|consen 82 GLGDYEEAILAYSEGLEKDPS---NKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKN 158 (539)
T ss_pred hcccHHHHHHHHHHHhhcCCc---hHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcC
Confidence 999999999999998887654 5666666666552110 0
Q ss_pred ------------hhHHHHHHHHH-----HhC-------CCCCC----------------------hhHHHHHHHHHHccC
Q 016027 125 ------------VKDAERFWLEM-----RKE-------NVTPN----------------------VVTYGTLVEGYCRLR 158 (396)
Q Consensus 125 ------------~~~a~~~~~~~-----~~~-------~~~~~----------------------~~~~~~l~~~~~~~~ 158 (396)
+..+.-.+... ... +..|. ..-...+.++..+..
T Consensus 159 p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk 238 (539)
T KOG0548|consen 159 PTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKK 238 (539)
T ss_pred cHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 00000000000 000 00010 011233455555556
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHH-------HHHHHHHhcCChH
Q 016027 159 RVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYT-------SLVKGYCKAGDLE 231 (396)
Q Consensus 159 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------~l~~~~~~~~~~~ 231 (396)
+++.+++.+....... -+...++....+|...|.+......-....+.|.. ...-|+ .+..+|.+.++++
T Consensus 239 ~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~ 315 (539)
T KOG0548|consen 239 DFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYE 315 (539)
T ss_pred hHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHH
Confidence 6666666666666653 34445555666677777766666665555554432 111222 2333555566777
Q ss_pred HHHHHHHHHHHCCCCCChhhH-------------------------HHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhh
Q 016027 232 GASKILKMMISRGFLPSPTTY-------------------------NYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLT 286 (396)
Q Consensus 232 ~a~~~~~~~~~~~~~~~~~~~-------------------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 286 (396)
.|+..|.+.......|+...- ..-...+.+.|++..|+..|.+++..+ +-|...
T Consensus 316 ~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~l 394 (539)
T KOG0548|consen 316 GAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARL 394 (539)
T ss_pred HHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHH
Confidence 777777766554333332111 111233556777777777777777765 336677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 016027 287 YHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRG 349 (396)
Q Consensus 287 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 349 (396)
|....-+|.+.|.+..|+.-.+...+.++. ....|.-=..++....++++|.+.|++.++.+
T Consensus 395 YsNRAac~~kL~~~~~aL~Da~~~ieL~p~-~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 395 YSNRAACYLKLGEYPEALKDAKKCIELDPN-FIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhcCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 777777777777777777776666665322 33444444455555667777777777776653
No 72
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.53 E-value=3.7e-10 Score=90.28 Aligned_cols=332 Identities=14% Similarity=0.111 Sum_probs=187.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHH
Q 016027 40 IRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGW 119 (396)
Q Consensus 40 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 119 (396)
+.-+....++..|+.+++.....+. .....+-.-++.++...|++++|+..+..+... ..++...+..|.-++
T Consensus 29 Ledfls~rDytGAislLefk~~~~~----EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~---~~~~~el~vnLAcc~ 101 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDR----EEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK---DDAPAELGVNLACCK 101 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccch----hhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc---CCCCcccchhHHHHH
Confidence 4556778899999999998776542 222344455778888999999999999988763 245677788888887
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCChhHHH------------------------------HHHHHHHccCCHHHHHHHHHH
Q 016027 120 FRSKNVKDAERFWLEMRKENVTPNVVTYG------------------------------TLVEGYCRLRRVDRAIRLVKE 169 (396)
Q Consensus 120 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~------------------------------~l~~~~~~~~~~~~a~~~~~~ 169 (396)
.-.|.+.+|..+-.+..+ ++-... +|.........+.+|+++|.+
T Consensus 102 FyLg~Y~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkr 176 (557)
T KOG3785|consen 102 FYLGQYIEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKR 176 (557)
T ss_pred HHHHHHHHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 788888888877655332 111111 222233333456677777777
Q ss_pred HHHcCCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHH-------
Q 016027 170 MRKEGIEPNAIVYNT-VIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMI------- 241 (396)
Q Consensus 170 ~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~------- 241 (396)
.+.. .|.....+. +.-+|.+..-++-+.++++-.++.-+ .+....+..+....+.-+-..|++-.+.+.
T Consensus 177 vL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~p-dStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~ 253 (557)
T KOG3785|consen 177 VLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFP-DSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEY 253 (557)
T ss_pred HHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCC-CcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccc
Confidence 7665 344444443 33456666667777776666655422 233333333222222111111111111111
Q ss_pred -------HCC------------CCC-----ChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHH--------
Q 016027 242 -------SRG------------FLP-----SPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHI-------- 289 (396)
Q Consensus 242 -------~~~------------~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------- 289 (396)
+.+ +-| -+..-..++-.|.+.+++.+|..+.+++... .|.....-.
T Consensus 254 ~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv~aalGQ 331 (557)
T KOG3785|consen 254 PFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVVFAALGQ 331 (557)
T ss_pred hhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHHHHHhhh
Confidence 110 000 1122333444567788888888777654321 122111111
Q ss_pred ---------------------------------HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChh
Q 016027 290 ---------------------------------LLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFD 336 (396)
Q Consensus 290 ---------------------------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 336 (396)
+..++.-...+++.+..+..+..--.. |....-.+..+.+..|++.
T Consensus 332 e~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~N-dD~Fn~N~AQAk~atgny~ 410 (557)
T KOG3785|consen 332 ETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTN-DDDFNLNLAQAKLATGNYV 410 (557)
T ss_pred hcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cchhhhHHHHHHHHhcChH
Confidence 111111222333333333333332222 2222234678888899999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHH-HHHHHHHHcCCchHHHHHHHHHhccchhhhhh
Q 016027 337 EASAEFEDMIRRGLVPHYLTFK-RLNDEFKKRGMTALAQKLCNVMSSVPRSMELL 390 (396)
Q Consensus 337 ~a~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 390 (396)
+|.++|-++....++ |..+|. .+.++|.+.|..+.|..++-++.........+
T Consensus 411 eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLL 464 (557)
T KOG3785|consen 411 EAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLL 464 (557)
T ss_pred HHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHH
Confidence 999999888765555 444554 55678899999999999888777665554443
No 73
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=1.3e-09 Score=92.88 Aligned_cols=366 Identities=14% Similarity=0.123 Sum_probs=208.5
Q ss_pred hhhhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHH
Q 016027 2 IKVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDS 81 (396)
Q Consensus 2 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 81 (396)
++.+...|++++|++...+++... |+ +..++..-+.++.+.+++++|+.+.+.-... ..+...+..-+.+
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~--pd--d~~a~~cKvValIq~~ky~~ALk~ikk~~~~------~~~~~~~fEKAYc 88 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV--PD--DEDAIRCKVVALIQLDKYEDALKLIKKNGAL------LVINSFFFEKAYC 88 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC--CC--cHhhHhhhHhhhhhhhHHHHHHHHHHhcchh------hhcchhhHHHHHH
Confidence 456778999999999999999854 55 3668999999999999999999776654432 1111222344556
Q ss_pred HHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-------------------
Q 016027 82 LCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTP------------------- 142 (396)
Q Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------------------- 142 (396)
..+.+..++|+..++..... +..+...-...+.+.|++++|+++|+.+.+.+.+-
T Consensus 89 ~Yrlnk~Dealk~~~~~~~~------~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~ 162 (652)
T KOG2376|consen 89 EYRLNKLDEALKTLKGLDRL------DDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQ 162 (652)
T ss_pred HHHcccHHHHHHHHhccccc------chHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHH
Confidence 66889999999999844332 44566677788899999999999999986643220
Q ss_pred --------ChhHHHHH---HHHHHccCCHHHHHHHHHHHHHcC-------CCCCHHH-------HHHHHHHHHHcCCHHH
Q 016027 143 --------NVVTYGTL---VEGYCRLRRVDRAIRLVKEMRKEG-------IEPNAIV-------YNTVIDGLVEAGRFEE 197 (396)
Q Consensus 143 --------~~~~~~~l---~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~-------~~~l~~~~~~~~~~~~ 197 (396)
...+|..+ .-.+...|++.+|+++++...+.+ -..+... -..+.-++...|+.++
T Consensus 163 ~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~e 242 (652)
T KOG2376|consen 163 LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAE 242 (652)
T ss_pred HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHH
Confidence 01122222 223456688888888887773321 1111111 1223345566788888
Q ss_pred HHHHHHHHHhcCCCCchhh----HHHHHHHHHhcCChHH--HHHHHH------------HH-------------------
Q 016027 198 VSGMMERFLVCEPGPTMVT----YTSLVKGYCKAGDLEG--ASKILK------------MM------------------- 240 (396)
Q Consensus 198 a~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~--a~~~~~------------~~------------------- 240 (396)
|.+++...++..+. |... -|.++ +.....++-. ++..++ .+
T Consensus 243 a~~iy~~~i~~~~~-D~~~~Av~~NNLv-a~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t 320 (652)
T KOG2376|consen 243 ASSIYVDIIKRNPA-DEPSLAVAVNNLV-ALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT 320 (652)
T ss_pred HHHHHHHHHHhcCC-CchHHHHHhcchh-hhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888888776542 2211 11111 1111111000 000000 00
Q ss_pred ---------HHC--CCCCChhhHHHHHHHHh--ccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 016027 241 ---------ISR--GFLPSPTTYNYFFRYFS--KFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVS 307 (396)
Q Consensus 241 ---------~~~--~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 307 (396)
... +..|. ..+..++..+. +......+..++...-+....-...+.-..+......|+++.|.+++
T Consensus 321 nk~~q~r~~~a~lp~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il 399 (652)
T KOG2376|consen 321 NKMDQVRELSASLPGMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEIL 399 (652)
T ss_pred hhHHHHHHHHHhCCccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 000 11111 12222222221 11134555555555544422212334455566677788899888888
Q ss_pred H--------HHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCCCHHHHHHH----HHHHHHcCCchHH
Q 016027 308 K--------EMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRR--GLVPHYLTFKRL----NDEFKKRGMTALA 373 (396)
Q Consensus 308 ~--------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~p~~~~~~~l----~~~~~~~g~~~~A 373 (396)
. .+.+.+. .+.+...+...+.+.++.+.|..++.+.+.. .-.+.......+ +..-.+.|+-++|
T Consensus 400 ~~~~~~~~ss~~~~~~--~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea 477 (652)
T KOG2376|consen 400 SLFLESWKSSILEAKH--LPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEA 477 (652)
T ss_pred HHHhhhhhhhhhhhcc--ChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHH
Confidence 8 4444433 3445556666777777777777777776541 112222333333 3333567888888
Q ss_pred HHHHHHHhc-cchhhh
Q 016027 374 QKLCNVMSS-VPRSME 388 (396)
Q Consensus 374 ~~~~~~~~~-~~~~~~ 388 (396)
...++++.+ .|...+
T Consensus 478 ~s~leel~k~n~~d~~ 493 (652)
T KOG2376|consen 478 SSLLEELVKFNPNDTD 493 (652)
T ss_pred HHHHHHHHHhCCchHH
Confidence 888888877 344433
No 74
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.51 E-value=6.7e-10 Score=95.81 Aligned_cols=202 Identities=17% Similarity=0.063 Sum_probs=131.9
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHH
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVY 112 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 112 (396)
..++..++..+...|+.+.+.+.+.+..+..... .............+...|++++|.+.++++....|. +...+
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~---~~~a~ 80 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAAR--ATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR---DLLAL 80 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccC--CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---cHHHH
Confidence 5577788888888888888877777776654211 122333444555677788999999999888876443 44444
Q ss_pred HHHHHHHHh----cCChhHHHHHHHHHHhCCCCCC-hhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 016027 113 NILLNGWFR----SKNVKDAERFWLEMRKENVTPN-VVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVID 187 (396)
Q Consensus 113 ~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 187 (396)
.. ...+.. .+....+.+.+... .+..|+ ......+...+...|++++|...+++..+.. +.+...+..+..
T Consensus 81 ~~-~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~ 156 (355)
T cd05804 81 KL-HLGAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAH 156 (355)
T ss_pred HH-hHHHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHH
Confidence 42 222222 34445555554441 112222 3344556677788888888888888888874 445667777788
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCC-Cc--hhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 016027 188 GLVEAGRFEEVSGMMERFLVCEPG-PT--MVTYTSLVKGYCKAGDLEGASKILKMMISR 243 (396)
Q Consensus 188 ~~~~~~~~~~a~~~~~~~~~~~~~-~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 243 (396)
++...|++++|...+++.....+. ++ ...|..+...+...|++++|..++++....
T Consensus 157 i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 157 VLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred HHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 888888888888888887765432 22 234556777888888888888888887543
No 75
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.51 E-value=2.6e-11 Score=104.91 Aligned_cols=174 Identities=16% Similarity=0.176 Sum_probs=85.2
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhccc--cc-CCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccC-----C
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDM--VK-NFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQ-----S 104 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~ 104 (396)
..++..++..|...|++++|..+++++.+.-. .. ..+.-....+.++..|...+++.+|..+|+++..... .
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 34555677777777777777777777666410 00 1122222233455666666666666666666544311 1
Q ss_pred CCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhC-----CCC-CCh-hHHHHHHHHHHccCCHHHHHHHHHHHHHcC---
Q 016027 105 WAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKE-----NVT-PNV-VTYGTLVEGYCRLRRVDRAIRLVKEMRKEG--- 174 (396)
Q Consensus 105 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~-~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--- 174 (396)
.+.-..+++.|...|.+.|++++|...++...+- |.. |.. ..++.+...+...+++++|..+++...+.-
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 1122344555666666666666666655554321 111 111 123344445555555555555555443320
Q ss_pred CC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 016027 175 IE----PNAIVYNTVIDGLVEAGRFEEVSGMMERFL 206 (396)
Q Consensus 175 ~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 206 (396)
.. .-..+++.+...|...|++++|.+++++++
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai 394 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAI 394 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 00 112344445555555555555555554444
No 76
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.50 E-value=1.3e-10 Score=100.69 Aligned_cols=240 Identities=19% Similarity=0.189 Sum_probs=180.4
Q ss_pred ChhHHHHHHHHHHccCCHHHHHHHHHHHHHc-----C-CCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhc-----CC
Q 016027 143 NVVTYGTLVEGYCRLRRVDRAIRLVKEMRKE-----G-IEPNAIV-YNTVIDGLVEAGRFEEVSGMMERFLVC-----EP 210 (396)
Q Consensus 143 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~ 210 (396)
-..+...+...|...|+++.|+.+++..++. | ..|...+ .+.+...|...+++++|..+|+++... |.
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~ 277 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE 277 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 3456677999999999999999999988765 2 1233333 334778899999999999999998763 22
Q ss_pred C--CchhhHHHHHHHHHhcCChHHHHHHHHHHHHC-----CC-CCC-hhhHHHHHHHHhccCCHHHHHHHHHHHHHC---
Q 016027 211 G--PTMVTYTSLVKGYCKAGDLEGASKILKMMISR-----GF-LPS-PTTYNYFFRYFSKFGKVEDAMNLYRKMIES--- 278 (396)
Q Consensus 211 ~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--- 278 (396)
. .-..+++.|..+|.+.|++++|...++...+. +. .|. ...++.+...+...+.+++|..++.+..+.
T Consensus 278 ~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~ 357 (508)
T KOG1840|consen 278 DHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLD 357 (508)
T ss_pred CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 1 22457788888999999999998888776542 11 112 234667778889999999999999876542
Q ss_pred CCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC----C---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 016027 279 GYTPD----RLTYHILLKILCKEDKLDLAIQVSKEMKCRG----C---DIDLDTSTMLIHLLCRMYKFDEASAEFEDMIR 347 (396)
Q Consensus 279 ~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 347 (396)
-+.++ ..+++.|...|...|++++|.+++++++... . .-....++.+...|.+.+++.+|.++|.+...
T Consensus 358 ~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~ 437 (508)
T KOG1840|consen 358 APGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKD 437 (508)
T ss_pred hccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 12222 4678999999999999999999999987531 1 11245678889999999999999999987653
Q ss_pred ----CCC-CCC-HHHHHHHHHHHHHcCCchHHHHHHHHHhc
Q 016027 348 ----RGL-VPH-YLTFKRLNDEFKKRGMTALAQKLCNVMSS 382 (396)
Q Consensus 348 ----~~~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 382 (396)
.|. .|+ ..+|..|...|.+.|+++.|+++.+.+..
T Consensus 438 i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 438 IMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 221 233 46789999999999999999999998753
No 77
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.50 E-value=8.8e-11 Score=97.47 Aligned_cols=221 Identities=12% Similarity=0.008 Sum_probs=113.4
Q ss_pred CCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChh
Q 016027 47 GMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVK 126 (396)
Q Consensus 47 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 126 (396)
+..+.++..+.+++..... +.+..+..|..++..+...|++++|...|+++.+.+|. +...|+.+...+...|+++
T Consensus 40 ~~~e~~i~~~~~~l~~~~~-~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~---~~~a~~~lg~~~~~~g~~~ 115 (296)
T PRK11189 40 LQQEVILARLNQILASRDL-TDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD---MADAYNYLGIYLTQAGNFD 115 (296)
T ss_pred hHHHHHHHHHHHHHccccC-CcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHCCCHH
Confidence 4555566666665543211 01122445666666666677777777777776665443 5566666666677777777
Q ss_pred HHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 016027 127 DAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFL 206 (396)
Q Consensus 127 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 206 (396)
+|...|++..+..+. +..++..+..++...|++++|++.++...+.. |+..........+...++.++|...+.+..
T Consensus 116 ~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 116 AAYEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 777777766654322 44556666666666677777777666666552 222211122222334556666666665543
Q ss_pred hcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHC---CC---CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 016027 207 VCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISR---GF---LPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESG 279 (396)
Q Consensus 207 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 279 (396)
... .++. |. ........|+...+ ..+..+.+. .+ +....+|..+...+...|++++|...|++..+.+
T Consensus 193 ~~~-~~~~--~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 193 EKL-DKEQ--WG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred hhC-Cccc--cH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 321 1111 11 11222223444332 233333321 00 0122345555666666666666666666665543
No 78
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.48 E-value=1.7e-09 Score=86.24 Aligned_cols=298 Identities=12% Similarity=0.045 Sum_probs=223.1
Q ss_pred hhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHH
Q 016027 4 VLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLC 83 (396)
Q Consensus 4 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 83 (396)
.+...|++..|+.-|-.+++ ..|+ +-.++..-+..|...|+..-|+.-+.++++.. |.-..+...-+..+.
T Consensus 47 ~lla~~Q~sDALt~yHaAve--~dp~--~Y~aifrRaT~yLAmGksk~al~Dl~rVlelK-----pDF~~ARiQRg~vll 117 (504)
T KOG0624|consen 47 ELLARGQLSDALTHYHAAVE--GDPN--NYQAIFRRATVYLAMGKSKAALQDLSRVLELK-----PDFMAARIQRGVVLL 117 (504)
T ss_pred HHHHhhhHHHHHHHHHHHHc--CCch--hHHHHHHHHHHHhhhcCCccchhhHHHHHhcC-----ccHHHHHHHhchhhh
Confidence 45678999999999999988 4666 35577777889999999999999999999874 433444555677888
Q ss_pred HcCChHHHHHHHHHHhhccCCCCCChHHHH------------HHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHH
Q 016027 84 KQGRVKAASEYFHKRKELDQSWAPTVRVYN------------ILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLV 151 (396)
Q Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 151 (396)
++|.+++|..=|+.....+|+-..+...+. ..+..+.-.|+...|+.....+++..+- +...+..-.
T Consensus 118 K~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~W-da~l~~~Ra 196 (504)
T KOG0624|consen 118 KQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPW-DASLRQARA 196 (504)
T ss_pred hcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcc-hhHHHHHHH
Confidence 999999999999999887654333333322 2334456689999999999999987543 778888889
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhh----HHHH-------
Q 016027 152 EGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVT----YTSL------- 220 (396)
Q Consensus 152 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~l------- 220 (396)
.+|...|++..|+.=++...+.. ..+..++.-+-..+...|+.+.++...++.++.+ |+... |..+
T Consensus 197 kc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKld--pdHK~Cf~~YKklkKv~K~l 273 (504)
T KOG0624|consen 197 KCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLD--PDHKLCFPFYKKLKKVVKSL 273 (504)
T ss_pred HHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccC--cchhhHHHHHHHHHHHHHHH
Confidence 99999999999998887776664 3456667777788899999999999999998854 34322 2111
Q ss_pred --HHHHHhcCChHHHHHHHHHHHHCCCCCCh---hhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 016027 221 --VKGYCKAGDLEGASKILKMMISRGFLPSP---TTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILC 295 (396)
Q Consensus 221 --~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 295 (396)
+......++|-++.+..+...+..+.... ..+..+-.++...+++.+|++.-.++++.. +.|..++..-..+|.
T Consensus 274 es~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv~~l~dRAeA~l 352 (504)
T KOG0624|consen 274 ESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDVQVLCDRAEAYL 352 (504)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-chHHHHHHHHHHHHh
Confidence 22344567788888888887776433222 234455667778899999999999988763 224778888888999
Q ss_pred hcCCHHHHHHHHHHHHHcCC
Q 016027 296 KEDKLDLAIQVSKEMKCRGC 315 (396)
Q Consensus 296 ~~~~~~~a~~~~~~~~~~~~ 315 (396)
-..+++.|+.-|+.+.+.+.
T Consensus 353 ~dE~YD~AI~dye~A~e~n~ 372 (504)
T KOG0624|consen 353 GDEMYDDAIHDYEKALELNE 372 (504)
T ss_pred hhHHHHHHHHHHHHHHhcCc
Confidence 89999999999999887643
No 79
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.48 E-value=1.3e-09 Score=94.04 Aligned_cols=310 Identities=13% Similarity=0.003 Sum_probs=196.3
Q ss_pred CCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHH
Q 016027 69 DSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYG 148 (396)
Q Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 148 (396)
|..+..+..+...+...|+.+.+.+.+.......+...............+...|++++|.+++++..+..+. +...+.
T Consensus 3 p~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~ 81 (355)
T cd05804 3 PDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-DLLALK 81 (355)
T ss_pred CccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHH
Confidence 5566778888888888899999888888776654321111223333445667789999999999998876432 444444
Q ss_pred HHHHHHH----ccCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHH
Q 016027 149 TLVEGYC----RLRRVDRAIRLVKEMRKEGIEPN-AIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKG 223 (396)
Q Consensus 149 ~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 223 (396)
. ...+. ..+....+.+.+... ....|+ ......+...+...|++++|...+++..+..+. +...+..+..+
T Consensus 82 ~-~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i 157 (355)
T cd05804 82 L-HLGAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHV 157 (355)
T ss_pred H-hHHHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHH
Confidence 2 22222 234555555555441 112333 344456667889999999999999999997653 56778889999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCC-CCh--hhHHHHHHHHhccCCHHHHHHHHHHHHHCCC-CCChhhH-H--HHHHHHHh
Q 016027 224 YCKAGDLEGASKILKMMISRGFL-PSP--TTYNYFFRYFSKFGKVEDAMNLYRKMIESGY-TPDRLTY-H--ILLKILCK 296 (396)
Q Consensus 224 ~~~~~~~~~a~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~-~--~l~~~~~~ 296 (396)
+...|++++|...+.+....... |+. ..|..+...+...|++++|..++++...... .+..... + .++..+..
T Consensus 158 ~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 237 (355)
T cd05804 158 LEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLEL 237 (355)
T ss_pred HHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHh
Confidence 99999999999999998876322 222 2455688889999999999999999865432 1111111 1 22333334
Q ss_pred cCCHHHHHHH--HHHH-HHcCC-CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC------CCHHHHHHHH--HHH
Q 016027 297 EDKLDLAIQV--SKEM-KCRGC-DIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLV------PHYLTFKRLN--DEF 364 (396)
Q Consensus 297 ~~~~~~a~~~--~~~~-~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------p~~~~~~~l~--~~~ 364 (396)
.|....+..+ +... ..... ............++...|+.++|...++.+...... ....+-..++ -++
T Consensus 238 ~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~ 317 (355)
T cd05804 238 AGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYA 317 (355)
T ss_pred cCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHH
Confidence 4443333332 1111 11101 111122235667788899999999999988762211 1111222233 355
Q ss_pred HHcCCchHHHHHHHHHhcc
Q 016027 365 KKRGMTALAQKLCNVMSSV 383 (396)
Q Consensus 365 ~~~g~~~~A~~~~~~~~~~ 383 (396)
...|+.++|.+.+......
T Consensus 318 ~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 318 FAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 6899999999999886543
No 80
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.47 E-value=6.6e-09 Score=89.61 Aligned_cols=365 Identities=12% Similarity=0.130 Sum_probs=199.4
Q ss_pred hhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHH
Q 016027 4 VLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLC 83 (396)
Q Consensus 4 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 83 (396)
.+.++|++......|+.++..- |-......|-..+......|-++.++.++++.++.. |..-...+..++
T Consensus 111 ~l~~Q~~iT~tR~tfdrALraL--pvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~--------P~~~eeyie~L~ 180 (835)
T KOG2047|consen 111 FLIKQGLITRTRRTFDRALRAL--PVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVA--------PEAREEYIEYLA 180 (835)
T ss_pred HHHhcchHHHHHHHHHHHHHhC--chHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcC--------HHHHHHHHHHHH
Confidence 4556677777777777776643 222224567777777777777777777777776653 222455566666
Q ss_pred HcCChHHHHHHHHHHhhccC----------------------------------------CCCCC--hHHHHHHHHHHHh
Q 016027 84 KQGRVKAASEYFHKRKELDQ----------------------------------------SWAPT--VRVYNILLNGWFR 121 (396)
Q Consensus 84 ~~~~~~~A~~~~~~~~~~~~----------------------------------------~~~~~--~~~~~~l~~~~~~ 121 (396)
+.+++++|.+.+......+. +.-+| ...|++|+.-|++
T Consensus 181 ~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr 260 (835)
T KOG2047|consen 181 KSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIR 260 (835)
T ss_pred hccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHH
Confidence 77777777666655443211 00111 2458889999999
Q ss_pred cCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHc---------------------------------------------
Q 016027 122 SKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCR--------------------------------------------- 156 (396)
Q Consensus 122 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------------------------------------------- 156 (396)
.|.+++|.++|++..+.-. +..-|..+.++|+.
T Consensus 261 ~g~~ekarDvyeeai~~v~--tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lN 338 (835)
T KOG2047|consen 261 SGLFEKARDVYEEAIQTVM--TVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLN 338 (835)
T ss_pred hhhhHHHHHHHHHHHHhhe--ehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHH
Confidence 9999999999988776411 22222222222211
Q ss_pred ---------------------cCCHHHHHHHHHHHHHcCCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 016027 157 ---------------------LRRVDRAIRLVKEMRKEGIEPN------AIVYNTVIDGLVEAGRFEEVSGMMERFLVCE 209 (396)
Q Consensus 157 ---------------------~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 209 (396)
.|+..+-...|.++.+. +.|. ...|..+...|-..|+.+.|..+|++..+..
T Consensus 339 sVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~ 417 (835)
T KOG2047|consen 339 SVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVP 417 (835)
T ss_pred HHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCC
Confidence 11122222223222222 1111 1234455555666666666666666665543
Q ss_pred CCCc---hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-----------------CChhhHHHHHHHHhccCCHHHHH
Q 016027 210 PGPT---MVTYTSLVKGYCKAGDLEGASKILKMMISRGFL-----------------PSPTTYNYFFRYFSKFGKVEDAM 269 (396)
Q Consensus 210 ~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----------------~~~~~~~~l~~~~~~~~~~~~a~ 269 (396)
.+.- ..+|..-...-.+..+++.|.+++......--. -+...|+..++.-...|-++...
T Consensus 418 y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk 497 (835)
T KOG2047|consen 418 YKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTK 497 (835)
T ss_pred ccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHH
Confidence 2211 234444444445555566666665554432100 01223444555555556666666
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHh---cCChhHHHHHHHHH
Q 016027 270 NLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDL-DTSTMLIHLLCR---MYKFDEASAEFEDM 345 (396)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~---~~~~~~a~~~~~~~ 345 (396)
.+|+++.+..+. ++.........+..+.-++++.+++++-+..-..|+. ..|+..+.-+.+ ..+++.|..+|++.
T Consensus 498 ~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqa 576 (835)
T KOG2047|consen 498 AVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQA 576 (835)
T ss_pred HHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 667666665543 3443333444444555566777777666555334443 556666655543 23578888999988
Q ss_pred HHCCCCCCHHHHHHH--HHHHHHcCCchHHHHHHHHHhcc
Q 016027 346 IRRGLVPHYLTFKRL--NDEFKKRGMTALAQKLCNVMSSV 383 (396)
Q Consensus 346 ~~~~~~p~~~~~~~l--~~~~~~~g~~~~A~~~~~~~~~~ 383 (396)
++ |.+|...-+..| ...-.+.|....|+.++++....
T Consensus 577 L~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~ 615 (835)
T KOG2047|consen 577 LD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA 615 (835)
T ss_pred Hh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 88 555554322222 22224568888888888886553
No 81
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.43 E-value=1.3e-08 Score=87.97 Aligned_cols=359 Identities=14% Similarity=0.088 Sum_probs=244.6
Q ss_pred hhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHc
Q 016027 6 AKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQ 85 (396)
Q Consensus 6 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 85 (396)
...|+-++|.......++. ++. |...|..++-.+....++++|+.+|..+...+ +.|..++.-+...-++.
T Consensus 52 ~~lg~~~ea~~~vr~glr~--d~~--S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-----~dN~qilrDlslLQ~Qm 122 (700)
T KOG1156|consen 52 NCLGKKEEAYELVRLGLRN--DLK--SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-----KDNLQILRDLSLLQIQM 122 (700)
T ss_pred hcccchHHHHHHHHHHhcc--Ccc--cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-----CCcHHHHHHHHHHHHHH
Confidence 3468899999988888874 333 56789999999999999999999999999986 88899999998888899
Q ss_pred CChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCChhHHHHHH------HHHHccC
Q 016027 86 GRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKEN-VTPNVVTYGTLV------EGYCRLR 158 (396)
Q Consensus 86 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~------~~~~~~~ 158 (396)
++++.....-....+..++ ....|..++.++.-.|++..|..+.++..+.. -.|+...+.... ....+.|
T Consensus 123 Rd~~~~~~tr~~LLql~~~---~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g 199 (700)
T KOG1156|consen 123 RDYEGYLETRNQLLQLRPS---QRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAG 199 (700)
T ss_pred HhhhhHHHHHHHHHHhhhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 9999988888888876554 56778889999999999999999999987764 345665554322 3345677
Q ss_pred CHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHH-HH
Q 016027 159 RVDRAIRLVKEMRKEGIEPNAI-VYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGAS-KI 236 (396)
Q Consensus 159 ~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~ 236 (396)
.+++|.+.+..-... ..|.. .-..-...+.+.+++++|..++..++..++. +...|..+..++.+..+.-++. .+
T Consensus 200 ~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPd-n~~Yy~~l~~~lgk~~d~~~~lk~l 276 (700)
T KOG1156|consen 200 SLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPD-NLDYYEGLEKALGKIKDMLEALKAL 276 (700)
T ss_pred cHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCch-hHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 888888777655433 22222 2334556778889999999999998885442 3333333444443222222222 34
Q ss_pred HHHHHH----------------------------------CCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHH----C
Q 016027 237 LKMMIS----------------------------------RGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIE----S 278 (396)
Q Consensus 237 ~~~~~~----------------------------------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~ 278 (396)
|....+ .|++ .++..+...|-.-...+-..++.-.+.. .
T Consensus 277 y~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p---~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~ 353 (700)
T KOG1156|consen 277 YAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVP---SVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGT 353 (700)
T ss_pred HHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCC---chhhhhHHHHhchhHhHHHHHHHHHHHhhcccc
Confidence 433332 2222 1233333333222211111111111111 1
Q ss_pred C----------CCCChh--hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHH
Q 016027 279 G----------YTPDRL--TYHILLKILCKEDKLDLAIQVSKEMKCRGCDID-LDTSTMLIHLLCRMYKFDEASAEFEDM 345 (396)
Q Consensus 279 ~----------~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~ 345 (396)
| -+|... ++..++..+-+.|+++.|..+++.+..+ .|+ +..|..=.+.+...|++++|..++++.
T Consensus 354 ~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea 431 (700)
T KOG1156|consen 354 GMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEA 431 (700)
T ss_pred cCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 1 134443 3445677888999999999999999976 333 345555568899999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhccch
Q 016027 346 IRRGLVPHYLTFKRLNDEFKKRGMTALAQKLCNVMSSVPR 385 (396)
Q Consensus 346 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 385 (396)
.+.+ .||...-..-+.-..+.++.++|.+++.++.+.+.
T Consensus 432 ~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 432 QELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred Hhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 8876 45655544666666889999999999999887664
No 82
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.40 E-value=6.2e-11 Score=100.49 Aligned_cols=253 Identities=13% Similarity=0.053 Sum_probs=137.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHH
Q 016027 39 LIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNG 118 (396)
Q Consensus 39 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~ 118 (396)
.+.-+.+.|++.+|.-.|+.+.+.+ |.+..+|..|+......++-..|+..++++.+++|+ |......|.-.
T Consensus 291 eG~~lm~nG~L~~A~LafEAAVkqd-----P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~---NleaLmaLAVS 362 (579)
T KOG1125|consen 291 EGCNLMKNGDLSEAALAFEAAVKQD-----PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT---NLEALMALAVS 362 (579)
T ss_pred HHHHHHhcCCchHHHHHHHHHHhhC-----hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc---cHHHHHHHHHH
Confidence 4445556666666666666666554 556666666666666666666666666666665544 55566666666
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCC--------ChhHHHHHHHHHHccCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHH
Q 016027 119 WFRSKNVKDAERFWLEMRKENVTP--------NVVTYGTLVEGYCRLRRVDRAIRLVKEMRK-EGIEPNAIVYNTVIDGL 189 (396)
Q Consensus 119 ~~~~~~~~~a~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~ 189 (396)
|...|.-..|.+.+++.+...++- +...-.. ..+.....+....++|-++.. .+..+|+.+...|.-.|
T Consensus 363 ytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy 440 (579)
T KOG1125|consen 363 YTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLY 440 (579)
T ss_pred HhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHH
Confidence 666666666666666554332110 0000000 111222233333444433333 33335666666666666
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHH
Q 016027 190 VEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAM 269 (396)
Q Consensus 190 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 269 (396)
.-.|++++|+..|+.++...| .|...||-|..+++...+.++|+..|.+..+..+. -+.+...|.-.|...|.+++|.
T Consensus 441 ~ls~efdraiDcf~~AL~v~P-nd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~-yVR~RyNlgIS~mNlG~ykEA~ 518 (579)
T KOG1125|consen 441 NLSGEFDRAVDCFEAALQVKP-NDYLLWNRLGATLANGNRSEEAISAYNRALQLQPG-YVRVRYNLGISCMNLGAYKEAV 518 (579)
T ss_pred hcchHHHHHHHHHHHHHhcCC-chHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCC-eeeeehhhhhhhhhhhhHHHHH
Confidence 667777777777777766544 25666777777777666677777777776665322 2334444555666677777776
Q ss_pred HHHHHHHHC---------CCCCChhhHHHHHHHHHhcCCHHHH
Q 016027 270 NLYRKMIES---------GYTPDRLTYHILLKILCKEDKLDLA 303 (396)
Q Consensus 270 ~~~~~~~~~---------~~~~~~~~~~~l~~~~~~~~~~~~a 303 (396)
..|-.++.. ...++...|..|=.++.-.++.+.+
T Consensus 519 ~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l 561 (579)
T KOG1125|consen 519 KHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLL 561 (579)
T ss_pred HHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHH
Confidence 666554321 1112334555555555555555533
No 83
>PF13041 PPR_2: PPR repeat family
Probab=99.39 E-value=1.5e-12 Score=75.94 Aligned_cols=50 Identities=32% Similarity=0.769 Sum_probs=36.9
Q ss_pred CChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHc
Q 016027 107 PTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCR 156 (396)
Q Consensus 107 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 156 (396)
||+.+||.++.+|.+.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56777777777777777777777777777777777777777777777653
No 84
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.39 E-value=1.3e-08 Score=81.24 Aligned_cols=320 Identities=13% Similarity=0.096 Sum_probs=163.9
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHH-
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRV- 111 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~- 111 (396)
..-...++..+...|++..|+.-|..+...+ |.+-.++..-+..|...|+-..|+.=+.+..+. +||-..
T Consensus 38 vekhlElGk~lla~~Q~sDALt~yHaAve~d-----p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel----KpDF~~A 108 (504)
T KOG0624|consen 38 VEKHLELGKELLARGQLSDALTHYHAAVEGD-----PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL----KPDFMAA 108 (504)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-----chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc----CccHHHH
Confidence 4455567777777777777777777777654 556666666677777777777777777776655 344221
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 016027 112 YNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVE 191 (396)
Q Consensus 112 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 191 (396)
-..-...+.+.|.+++|..=|+.+++.. |+..+- ..++.+.--.++- ......+..+..
T Consensus 109 RiQRg~vllK~Gele~A~~DF~~vl~~~--~s~~~~---~eaqskl~~~~e~----------------~~l~~ql~s~~~ 167 (504)
T KOG0624|consen 109 RIQRGVVLLKQGELEQAEADFDQVLQHE--PSNGLV---LEAQSKLALIQEH----------------WVLVQQLKSASG 167 (504)
T ss_pred HHHhchhhhhcccHHHHHHHHHHHHhcC--CCcchh---HHHHHHHHhHHHH----------------HHHHHHHHHHhc
Confidence 1223345667777777777777776653 221110 0000000000000 001112222334
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHH
Q 016027 192 AGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNL 271 (396)
Q Consensus 192 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 271 (396)
.|+...|+.....+++..+ .+...+..-..+|...|++..|+.-++...+.... +..++..+-..+...|+.+.++..
T Consensus 168 ~GD~~~ai~~i~~llEi~~-Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~ 245 (504)
T KOG0624|consen 168 SGDCQNAIEMITHLLEIQP-WDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKE 245 (504)
T ss_pred CCchhhHHHHHHHHHhcCc-chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHH
Confidence 4555555555555555432 34445555555555555555555555555444222 334444444445555555555555
Q ss_pred HHHHHHCCCCCChhh----HHHH---------HHHHHhcCCHHHHHHHHHHHHHcCCCCCh---hhHHHHHHHHHhcCCh
Q 016027 272 YRKMIESGYTPDRLT----YHIL---------LKILCKEDKLDLAIQVSKEMKCRGCDIDL---DTSTMLIHLLCRMYKF 335 (396)
Q Consensus 272 ~~~~~~~~~~~~~~~----~~~l---------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~ 335 (396)
.++.++.+ ||... |-.+ +......+++.++++..+...+..+.... ..+..+-.++...+++
T Consensus 246 iRECLKld--pdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~ 323 (504)
T KOG0624|consen 246 IRECLKLD--PDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQF 323 (504)
T ss_pred HHHHHccC--cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCH
Confidence 55554432 23211 1100 11223445566666666665555333222 2233344555566666
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhccchhh
Q 016027 336 DEASAEFEDMIRRGLVPHYLTFKRLNDEFKKRGMTALAQKLCNVMSSVPRSM 387 (396)
Q Consensus 336 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 387 (396)
.+|+....+.++.. +.|..++.--..+|.-...++.|+.-|++..+.+.+.
T Consensus 324 ~eAiqqC~evL~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn 374 (504)
T KOG0624|consen 324 GEAIQQCKEVLDID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESN 374 (504)
T ss_pred HHHHHHHHHHHhcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCccc
Confidence 66666666666532 2235556566666666666666666666666555443
No 85
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=4.9e-09 Score=88.49 Aligned_cols=335 Identities=16% Similarity=0.119 Sum_probs=219.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHH
Q 016027 38 ILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLN 117 (396)
Q Consensus 38 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~ 117 (396)
.-+.+....|+++.|+..|..++... |++...|..-..+|+..|++++|++=-.+.....|.+ ...|+....
T Consensus 7 ~kgnaa~s~~d~~~ai~~~t~ai~l~-----p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w---~kgy~r~Ga 78 (539)
T KOG0548|consen 7 EKGNAAFSSGDFETAIRLFTEAIMLS-----PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDW---AKGYSRKGA 78 (539)
T ss_pred HHHHhhcccccHHHHHHHHHHHHccC-----CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCch---hhHHHHhHH
Confidence 34566788999999999999999986 8899999999999999999999998888877775543 457888999
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccC----------------------------C----------
Q 016027 118 GWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLR----------------------------R---------- 159 (396)
Q Consensus 118 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------------------------~---------- 159 (396)
++.-.|++++|+.-|.+-++... -+...+..+..++.... .
T Consensus 79 a~~~lg~~~eA~~ay~~GL~~d~-~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~ 157 (539)
T KOG0548|consen 79 ALFGLGDYEEAILAYSEGLEKDP-SNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQK 157 (539)
T ss_pred HHHhcccHHHHHHHHHHHhhcCC-chHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhc
Confidence 99999999999999999887632 25555566655542110 0
Q ss_pred -------------HHHHHHHHHHH-----HHcC-------CCC------------C----------HHHHHHHHHHHHHc
Q 016027 160 -------------VDRAIRLVKEM-----RKEG-------IEP------------N----------AIVYNTVIDGLVEA 192 (396)
Q Consensus 160 -------------~~~a~~~~~~~-----~~~~-------~~~------------~----------~~~~~~l~~~~~~~ 192 (396)
+..+...+... ...| ..| + ..-...+.++..+.
T Consensus 158 ~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykk 237 (539)
T KOG0548|consen 158 NPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKK 237 (539)
T ss_pred CcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHh
Confidence 00011000000 0000 011 0 01123455566666
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHH-------HHHHHhccCCH
Q 016027 193 GRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNY-------FFRYFSKFGKV 265 (396)
Q Consensus 193 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~~~~ 265 (396)
.+++.|++-+....... .+..-++....+|...|.+..+...-....+.|.. ...-|+. +..+|.+.+++
T Consensus 238 k~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~ 314 (539)
T KOG0548|consen 238 KDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDY 314 (539)
T ss_pred hhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhH
Confidence 67777777777777654 35556666777788888877777766666655432 2222332 33355666777
Q ss_pred HHHHHHHHHHHHCCCCCChhhH-------------------------HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh
Q 016027 266 EDAMNLYRKMIESGYTPDRLTY-------------------------HILLKILCKEDKLDLAIQVSKEMKCRGCDIDLD 320 (396)
Q Consensus 266 ~~a~~~~~~~~~~~~~~~~~~~-------------------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 320 (396)
+.+...|.+.......|+...- ..-...+.+.|++..|+..|.++++..+. |..
T Consensus 315 ~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~-Da~ 393 (539)
T KOG0548|consen 315 EGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPE-DAR 393 (539)
T ss_pred HHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCc-hhH
Confidence 8888888776554333332211 11133455678888888888888877644 778
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhccchh
Q 016027 321 TSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFKKRGMTALAQKLCNVMSSVPRS 386 (396)
Q Consensus 321 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 386 (396)
.|....-+|.+.|.+..|++-.+..++.+ ++....|..-..++....++++|.+.|++..+..++
T Consensus 394 lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~ 458 (539)
T KOG0548|consen 394 LYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPS 458 (539)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Confidence 88888888888888888888777777653 333445555555666677788888888876655443
No 86
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.36 E-value=7.3e-10 Score=94.17 Aligned_cols=258 Identities=12% Similarity=0.028 Sum_probs=195.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHc
Q 016027 77 ILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCR 156 (396)
Q Consensus 77 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 156 (396)
..+.-+.+.|++.+|.-.|+.+.+.+|. +...|..|.......++-..|+..+.+..+..+. |......|.-.|..
T Consensus 290 ~eG~~lm~nG~L~~A~LafEAAVkqdP~---haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytN 365 (579)
T KOG1125|consen 290 KEGCNLMKNGDLSEAALAFEAAVKQDPQ---HAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTN 365 (579)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHhhChH---HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhh
Confidence 3566778899999999999999998766 8899999999999999999999999999887544 78888999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCC-----C---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCCchhhHHHHHHHHHhc
Q 016027 157 LRRVDRAIRLVKEMRKEGIE-----P---NAIVYNTVIDGLVEAGRFEEVSGMMERFLV-CEPGPTMVTYTSLVKGYCKA 227 (396)
Q Consensus 157 ~~~~~~a~~~~~~~~~~~~~-----~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~ 227 (396)
.|.-..|.+.++..+....+ + +...-.. ..+.....+....++|-++.. .+..+|+.+...|.-.|.-.
T Consensus 366 eg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls 443 (579)
T KOG1125|consen 366 EGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLS 443 (579)
T ss_pred hhhHHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcc
Confidence 99999999999888654210 0 0000000 112222334445555554443 34347888999999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 016027 228 GDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVS 307 (396)
Q Consensus 228 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 307 (396)
|++++|++.|+.+....+. |...||.|...+....+.++|+..|.+.++..+. -..+...|.-.|...|.+++|...|
T Consensus 444 ~efdraiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~-yVR~RyNlgIS~mNlG~ykEA~~hl 521 (579)
T KOG1125|consen 444 GEFDRAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQLQPG-YVRVRYNLGISCMNLGAYKEAVKHL 521 (579)
T ss_pred hHHHHHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCC-eeeeehhhhhhhhhhhhHHHHHHHH
Confidence 9999999999999987544 8889999999999999999999999999986432 2345556778899999999999998
Q ss_pred HHHHHc---------CCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 016027 308 KEMKCR---------GCDIDLDTSTMLIHLLCRMYKFDEASAEF 342 (396)
Q Consensus 308 ~~~~~~---------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 342 (396)
-.++.. ...++...|..|=.++.-.++.+-+.+..
T Consensus 522 L~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~ 565 (579)
T KOG1125|consen 522 LEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA 565 (579)
T ss_pred HHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence 877642 12234578888877788888877665543
No 87
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.35 E-value=1.7e-09 Score=84.51 Aligned_cols=85 Identities=7% Similarity=0.030 Sum_probs=34.9
Q ss_pred cCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 016027 122 SKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGM 201 (396)
Q Consensus 122 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 201 (396)
.+++..+..+.++....| +..+.+...-...+.|+++.|.+-|+...+-+--.....|+..+ +..+.|+++.|++.
T Consensus 125 e~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~ 200 (459)
T KOG4340|consen 125 EGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKH 200 (459)
T ss_pred cccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHH
Confidence 344444444444433221 23333333333344555555555555544432111122232222 23344555555555
Q ss_pred HHHHHhcCC
Q 016027 202 MERFLVCEP 210 (396)
Q Consensus 202 ~~~~~~~~~ 210 (396)
..++.+.|+
T Consensus 201 iSEIieRG~ 209 (459)
T KOG4340|consen 201 ISEIIERGI 209 (459)
T ss_pred HHHHHHhhh
Confidence 555554443
No 88
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.35 E-value=3.8e-08 Score=86.78 Aligned_cols=337 Identities=13% Similarity=0.042 Sum_probs=232.7
Q ss_pred hhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHH-HcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHH
Q 016027 4 VLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYA-RAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSL 82 (396)
Q Consensus 4 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 82 (396)
.|.-.|.-..|+.+.+..+.....|+. ...+....+.|. +.|..++++++-.++........-...+..|..++-+|
T Consensus 366 s~saag~~s~Av~ll~~~~~~~~~ps~--~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y 443 (799)
T KOG4162|consen 366 SYSAAGSDSKAVNLLRESLKKSEQPSD--ISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAY 443 (799)
T ss_pred HHHHhccchHHHHHHHhhcccccCCCc--chHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHH
Confidence 355667778899998888876555652 335555555554 46888889988888887321111123345566666665
Q ss_pred HHcC-----------ChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHH
Q 016027 83 CKQG-----------RVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLV 151 (396)
Q Consensus 83 ~~~~-----------~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 151 (396)
...- ...++++.++++.+.++. |..+...+.--|+..++.+.|.+..++..+.+..-+...|..+.
T Consensus 444 ~~~A~~a~~~seR~~~h~kslqale~av~~d~~---dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLA 520 (799)
T KOG4162|consen 444 GFQARQANLKSERDALHKKSLQALEEAVQFDPT---DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLA 520 (799)
T ss_pred HhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC---CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 5431 256788899999887654 33333344555778899999999999999886677899999999
Q ss_pred HHHHccCCHHHHHHHHHHHHHc-CCC------------------CCHHHHHHHHHHHHH---------c-----------
Q 016027 152 EGYCRLRRVDRAIRLVKEMRKE-GIE------------------PNAIVYNTVIDGLVE---------A----------- 192 (396)
Q Consensus 152 ~~~~~~~~~~~a~~~~~~~~~~-~~~------------------~~~~~~~~l~~~~~~---------~----------- 192 (396)
-.+...+++.+|+.+.+..... |.. ....|...++..+-. .
T Consensus 521 LvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~ 600 (799)
T KOG4162|consen 521 LVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLH 600 (799)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccc
Confidence 9999999999999998887654 110 001122222221110 0
Q ss_pred ---CCHHHHHHHHHHHH--------hcC-----------CCCc------hhhHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 016027 193 ---GRFEEVSGMMERFL--------VCE-----------PGPT------MVTYTSLVKGYCKAGDLEGASKILKMMISRG 244 (396)
Q Consensus 193 ---~~~~~a~~~~~~~~--------~~~-----------~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 244 (396)
++..++.+....+. ..+ +.|+ ...|......+.+.+..++|...+.+.....
T Consensus 601 la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~ 680 (799)
T KOG4162|consen 601 LALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID 680 (799)
T ss_pred cCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc
Confidence 01111111111110 011 0111 2245566777888889999998888888764
Q ss_pred CCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHH--HHHHHHHcCCCCChhhH
Q 016027 245 FLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQ--VSKEMKCRGCDIDLDTS 322 (396)
Q Consensus 245 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~--~~~~~~~~~~~~~~~~~ 322 (396)
+-....|......+...|++++|.+.|......++. ++....++..++.+.|+..-|.. ++..+.+.++. +...|
T Consensus 681 -~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~-hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~-n~eaW 757 (799)
T KOG4162|consen 681 -PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPD-HVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL-NHEAW 757 (799)
T ss_pred -hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC-CHHHH
Confidence 446777888888888999999999999998886532 56788899999999998887777 99999998765 89999
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHC
Q 016027 323 TMLIHLLCRMYKFDEASAEFEDMIRR 348 (396)
Q Consensus 323 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 348 (396)
..+...+.+.|+.+.|.+.|....+.
T Consensus 758 ~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 758 YYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhh
Confidence 99999999999999999999988763
No 89
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.35 E-value=2.6e-10 Score=101.45 Aligned_cols=246 Identities=16% Similarity=0.175 Sum_probs=142.2
Q ss_pred CCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhH
Q 016027 67 NFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVT 146 (396)
Q Consensus 67 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 146 (396)
|+.|+..+|..++.-|+..|+.+.|- +|.-|... ..+-+...++.++.+....++.+.+. .|.+.+
T Consensus 20 gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~k--sLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDt 85 (1088)
T KOG4318|consen 20 GILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIK--SLPVREGVFRGLVASHKEANDAENPK-----------EPLADT 85 (1088)
T ss_pred cCCCchhhHHHHHHHHcccCCCcccc-chhhhhcc--cccccchhHHHHHhcccccccccCCC-----------CCchhH
Confidence 45677778888888888888888777 77777665 44456667777777777777776665 567778
Q ss_pred HHHHHHHHHccCCHHH---HHHHHHHHH----HcCCCCCHHHHH--------------HHHHHHHHcCCHHHHHHHHHHH
Q 016027 147 YGTLVEGYCRLRRVDR---AIRLVKEMR----KEGIEPNAIVYN--------------TVIDGLVEAGRFEEVSGMMERF 205 (396)
Q Consensus 147 ~~~l~~~~~~~~~~~~---a~~~~~~~~----~~~~~~~~~~~~--------------~l~~~~~~~~~~~~a~~~~~~~ 205 (396)
|..|..+|...||... +.+.+..+. ..|+-.....+- ..+....-.|-++.+++++..+
T Consensus 86 yt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~ 165 (1088)
T KOG4318|consen 86 YTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKV 165 (1088)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 8888888888887654 222111111 112111111111 1112222334444444444333
Q ss_pred HhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChh
Q 016027 206 LVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRL 285 (396)
Q Consensus 206 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 285 (396)
-..... . .+..+++-+... .....++........-.|++.+|.+++..-.-.|+.+.|..++.+|.+.|++.+..
T Consensus 166 Pvsa~~-~--p~~vfLrqnv~~--ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~H 240 (1088)
T KOG4318|consen 166 PVSAWN-A--PFQVFLRQNVVD--NTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAH 240 (1088)
T ss_pred Cccccc-c--hHHHHHHHhccC--CchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccc
Confidence 111000 0 111112222221 22233333333322224677777777777777777777777777777777777766
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 016027 286 TYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYK 334 (396)
Q Consensus 286 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 334 (396)
-|..|+.+ .++...+..+++-|.+.|+.|+..|+...+..+...|.
T Consensus 241 yFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 241 YFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred cchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 66666544 66777777777777777777777777776666666443
No 90
>PF13041 PPR_2: PPR repeat family
Probab=99.34 E-value=4e-12 Score=74.16 Aligned_cols=50 Identities=34% Similarity=0.489 Sum_probs=39.2
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 016027 317 IDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFKK 366 (396)
Q Consensus 317 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 366 (396)
||..+|+.++.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67777888888888888888888888888877788888888888777753
No 91
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.31 E-value=6.6e-09 Score=81.33 Aligned_cols=356 Identities=12% Similarity=0.071 Sum_probs=202.3
Q ss_pred hhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHH
Q 016027 5 LAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCK 84 (396)
Q Consensus 5 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 84 (396)
+.+..+++.|++++....+. .|. +...+..++.+|....++..|-.+++++.... |.-..--..-...+.+
T Consensus 20 lI~d~ry~DaI~~l~s~~Er--~p~--~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~-----P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELER--SPR--SRAGLSLLGYCYYRLQEFALAAECYEQLGQLH-----PELEQYRLYQAQSLYK 90 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhc--Ccc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-----hHHHHHHHHHHHHHHH
Confidence 36677888888887766664 342 36788899999999999999999999888763 3333322334555666
Q ss_pred cCChHHHHHHHHHHhhcc----------------CCC-------------CCChHHHHHHHHHHHhcCChhHHHHHHHHH
Q 016027 85 QGRVKAASEYFHKRKELD----------------QSW-------------APTVRVYNILLNGWFRSKNVKDAERFWLEM 135 (396)
Q Consensus 85 ~~~~~~A~~~~~~~~~~~----------------~~~-------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 135 (396)
.+.+..|+.+...+...+ .+. .-+..+.+...-...+.|+++.|.+-|...
T Consensus 91 A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaA 170 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAA 170 (459)
T ss_pred hcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHH
Confidence 677777776665544310 000 113344444555566789999999999988
Q ss_pred HhC-CCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH----------------------------HHHHHHH
Q 016027 136 RKE-NVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNA----------------------------IVYNTVI 186 (396)
Q Consensus 136 ~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------------------~~~~~l~ 186 (396)
.+. |.. ....|+..+ +..+.++++.|+++..+++++|++..+ ..+|.-.
T Consensus 171 lqvsGyq-pllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKa 248 (459)
T KOG4340|consen 171 LQVSGYQ-PLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKA 248 (459)
T ss_pred HhhcCCC-chhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhh
Confidence 876 444 555666554 445678999999999999999864311 1122233
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcC-CCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCH
Q 016027 187 DGLVEAGRFEEVSGMMERFLVCE-PGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKV 265 (396)
Q Consensus 187 ~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 265 (396)
..+.+.|+++.|.+.+..|-... ...|+.|...+.-.= ..+++-+...-+.-+...++ -...||..++-.||+..-+
T Consensus 249 AIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf 326 (459)
T KOG4340|consen 249 AIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYF 326 (459)
T ss_pred hhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHH
Confidence 34566777777777776663321 224556665554222 23445555555555555544 3456777778888888888
Q ss_pred HHHHHHHHHHHHCCC-CCChhhHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH-HhcCChh----HH
Q 016027 266 EDAMNLYRKMIESGY-TPDRLTYHILLKILC-KEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLL-CRMYKFD----EA 338 (396)
Q Consensus 266 ~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~----~a 338 (396)
+.|-+++.+-..... -.+...|+. +.++. -.-..+++.+-+..+...- ....-...+..- .+..+-+ .|
T Consensus 327 ~lAADvLAEn~~lTyk~L~~Yly~L-LdaLIt~qT~pEea~KKL~~La~~l---~~kLRklAi~vQe~r~~~dd~a~R~a 402 (459)
T KOG4340|consen 327 DLAADVLAENAHLTYKFLTPYLYDL-LDALITCQTAPEEAFKKLDGLAGML---TEKLRKLAIQVQEARHNRDDEAIRKA 402 (459)
T ss_pred hHHHHHHhhCcchhHHHhhHHHHHH-HHHHHhCCCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 877777654211100 112333332 33332 2345666666555554320 111111111111 1222212 22
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHh
Q 016027 339 SAEFEDMIRRGLVPHYLTFKRLNDEFKKRGMTALAQKLCNVMS 381 (396)
Q Consensus 339 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 381 (396)
++-+++.++.- ..+...-...|++..++..+.++|+.-.
T Consensus 403 i~~Yd~~LE~Y----LPVlMa~AkiyW~~~Dy~~vEk~Fr~Sv 441 (459)
T KOG4340|consen 403 VNEYDETLEKY----LPVLMAQAKIYWNLEDYPMVEKIFRKSV 441 (459)
T ss_pred HHHHHHHHHHH----HHHHHHHHHhhccccccHHHHHHHHHHH
Confidence 22233333321 1123333445667788888888887643
No 92
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.28 E-value=7.4e-08 Score=93.84 Aligned_cols=372 Identities=10% Similarity=-0.032 Sum_probs=230.2
Q ss_pred hhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHH
Q 016027 4 VLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLC 83 (396)
Q Consensus 4 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 83 (396)
.+...|++.+|...+... +..+. ........+..+...|+++.+..+++.+.... ...++.........+.
T Consensus 350 ~~~~~g~~~~Al~~a~~a---~d~~~--~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~----~~~~~~l~~~~a~~~~ 420 (903)
T PRK04841 350 AWLAQGFPSEAIHHALAA---GDAQL--LRDILLQHGWSLFNQGELSLLEECLNALPWEV----LLENPRLVLLQAWLAQ 420 (903)
T ss_pred HHHHCCCHHHHHHHHHHC---CCHHH--HHHHHHHhHHHHHhcCChHHHHHHHHhCCHHH----HhcCcchHHHHHHHHH
Confidence 355677777776543332 11111 02233344556667788888777777653321 1222334455566667
Q ss_pred HcCChHHHHHHHHHHhhccCCC----CCC--hHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh----hHHHHHHHH
Q 016027 84 KQGRVKAASEYFHKRKELDQSW----APT--VRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNV----VTYGTLVEG 153 (396)
Q Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~----~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~ 153 (396)
..|++++|..++..+...-... .+. ......+...+...|++++|...++.....-...+. ...+.+...
T Consensus 421 ~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~ 500 (903)
T PRK04841 421 SQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEV 500 (903)
T ss_pred HCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHH
Confidence 8899999999998875431111 111 122233345566789999999999988763111121 244566677
Q ss_pred HHccCCHHHHHHHHHHHHHcCC---CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCC--C-chhhHHHHH
Q 016027 154 YCRLRRVDRAIRLVKEMRKEGI---EP--NAIVYNTVIDGLVEAGRFEEVSGMMERFLVC----EPG--P-TMVTYTSLV 221 (396)
Q Consensus 154 ~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~ 221 (396)
+...|++++|...+++.....- .+ .......+...+...|+++.|...+++.... +.. + ....+..+.
T Consensus 501 ~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 580 (903)
T PRK04841 501 HHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRA 580 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHH
Confidence 7889999999999988765311 11 1234455667788899999999988877653 211 1 123344566
Q ss_pred HHHHhcCChHHHHHHHHHHHHC----CCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCC--CCCChh--hH--HHHH
Q 016027 222 KGYCKAGDLEGASKILKMMISR----GFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESG--YTPDRL--TY--HILL 291 (396)
Q Consensus 222 ~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~--~~--~~l~ 291 (396)
..+...|++++|...+.+.... +.......+..+...+...|++++|...+....... ...... .. ...+
T Consensus 581 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 660 (903)
T PRK04841 581 QLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRL 660 (903)
T ss_pred HHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHH
Confidence 6777889999999998887653 111123344556667788999999999988875421 111110 00 1112
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCC---hhhHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCCC-HHHHHHHHHH
Q 016027 292 KILCKEDKLDLAIQVSKEMKCRGCDID---LDTSTMLIHLLCRMYKFDEASAEFEDMIRR----GLVPH-YLTFKRLNDE 363 (396)
Q Consensus 292 ~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~p~-~~~~~~l~~~ 363 (396)
..+...|+.+.|..++........... ...+..+..++...|++++|...+++.... |..++ ..+...+..+
T Consensus 661 ~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a 740 (903)
T PRK04841 661 IYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQL 740 (903)
T ss_pred HHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 344557899999988777654221111 111345677888899999999999988652 32222 2356667778
Q ss_pred HHHcCCchHHHHHHHHHhccc
Q 016027 364 FKKRGMTALAQKLCNVMSSVP 384 (396)
Q Consensus 364 ~~~~g~~~~A~~~~~~~~~~~ 384 (396)
+.+.|+.++|...+.+..+..
T Consensus 741 ~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 741 YWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHh
Confidence 899999999999999876543
No 93
>PLN02789 farnesyltranstransferase
Probab=99.28 E-value=1.8e-08 Score=83.66 Aligned_cols=215 Identities=8% Similarity=0.001 Sum_probs=149.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcC-ChHHHHHHHHHHhhccCCCCCChHHHH
Q 016027 35 TFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQG-RVKAASEYFHKRKELDQSWAPTVRVYN 113 (396)
Q Consensus 35 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~ 113 (396)
++..+-.++...++.++|+...++++... |.+..+|+....++...| ++++++..++++.+.+|. +..+|+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~ln-----P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk---nyqaW~ 110 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLN-----PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK---NYQIWH 110 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHC-----chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc---chHHhH
Confidence 44455556666788888999999888875 777778888888888877 578899998888887554 666777
Q ss_pred HHHHHHHhcCCh--hHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 016027 114 ILLNGWFRSKNV--KDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVE 191 (396)
Q Consensus 114 ~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 191 (396)
.....+.+.|+. ++++.+++++.+...+ |..+|+....++...|+++++++.++++++.+ +-+...|+....++.+
T Consensus 111 ~R~~~l~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~ 188 (320)
T PLN02789 111 HRRWLAEKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITR 188 (320)
T ss_pred HHHHHHHHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHh
Confidence 665555566653 6778888888877554 77888888888888888888888888888876 3455566655555544
Q ss_pred c---CCH----HHHHHHHHHHHhcCCCCchhhHHHHHHHHHhc----CChHHHHHHHHHHHHCCCCCChhhHHHHHHHHh
Q 016027 192 A---GRF----EEVSGMMERFLVCEPGPTMVTYTSLVKGYCKA----GDLEGASKILKMMISRGFLPSPTTYNYFFRYFS 260 (396)
Q Consensus 192 ~---~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 260 (396)
. |.. ++.+....+++...+ .+...|+.+...+... +...+|...+.+....++ .+......|+..|+
T Consensus 189 ~~~l~~~~~~~e~el~y~~~aI~~~P-~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~-~s~~al~~l~d~~~ 266 (320)
T PLN02789 189 SPLLGGLEAMRDSELKYTIDAILANP-RNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS-NHVFALSDLLDLLC 266 (320)
T ss_pred ccccccccccHHHHHHHHHHHHHhCC-CCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC-CcHHHHHHHHHHHH
Confidence 3 222 456667767766655 3667777777777662 334557777777665432 25666666777665
Q ss_pred c
Q 016027 261 K 261 (396)
Q Consensus 261 ~ 261 (396)
.
T Consensus 267 ~ 267 (320)
T PLN02789 267 E 267 (320)
T ss_pred h
Confidence 4
No 94
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.27 E-value=1.9e-10 Score=94.03 Aligned_cols=250 Identities=14% Similarity=0.082 Sum_probs=131.6
Q ss_pred HHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCC
Q 016027 80 DSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRR 159 (396)
Q Consensus 80 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 159 (396)
+-+.-.|++..++.-.+ .... ....+.....-+.+++...|+++.++ .++... ..|.......+...+...++
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~--~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~-~~~~l~av~~la~y~~~~~~ 81 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSF--SPENKLERDFYQYRSYIALGQYDSVL---SEIKKS-SSPELQAVRLLAEYLSSPSD 81 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTS--TCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TT-SSCCCHHHHHHHHHHCTSTT
T ss_pred HHHHHhhhHHHHHHHhh-ccCC--CchhHHHHHHHHHHHHHHcCChhHHH---HHhccC-CChhHHHHHHHHHHHhCccc
Confidence 34445677777775555 2222 11123344455666777777766543 233222 25555565555554443344
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHH
Q 016027 160 VDRAIRLVKEMRKEGIEPNAIVY-NTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILK 238 (396)
Q Consensus 160 ~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 238 (396)
-+.++.-++.....+..++..++ .....++...|++++|++++... .+.......+.+|.+.++++.|.+.++
T Consensus 82 ~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~ 155 (290)
T PF04733_consen 82 KESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELK 155 (290)
T ss_dssp HHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44444444443333222222222 22234455567777777766542 345555666677777777777777777
Q ss_pred HHHHCCCCCChhhHHHHHHHHhc----cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 016027 239 MMISRGFLPSPTTYNYFFRYFSK----FGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRG 314 (396)
Q Consensus 239 ~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 314 (396)
.|.+.+ +..+...+..++.. .+.+.+|..+|+++.+. ..+++.+.+.+..++...|++++|..++.+....+
T Consensus 156 ~~~~~~---eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~ 231 (290)
T PF04733_consen 156 NMQQID---EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD 231 (290)
T ss_dssp HHHCCS---CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-
T ss_pred HHHhcC---CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence 776542 22333334443322 23567777777776543 34566666777777777777777777777766554
Q ss_pred CCCChhhHHHHHHHHHhcCCh-hHHHHHHHHHHH
Q 016027 315 CDIDLDTSTMLIHLLCRMYKF-DEASAEFEDMIR 347 (396)
Q Consensus 315 ~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~ 347 (396)
.. ++.+...++.+....|+. +.+.+.+.++..
T Consensus 232 ~~-~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 232 PN-DPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp CC-HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred cC-CHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 33 556666666666666666 445566666655
No 95
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.27 E-value=9.7e-10 Score=89.93 Aligned_cols=252 Identities=13% Similarity=0.091 Sum_probs=158.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHH
Q 016027 40 IRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGW 119 (396)
Q Consensus 40 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 119 (396)
++-+.-.|++..++.-.+ .... +.+........+.+++...|+++.++.- ... +..|.......+...+
T Consensus 8 vrn~fy~G~Y~~~i~e~~-~~~~----~~~~~~e~~~~~~Rs~iAlg~~~~vl~e---i~~---~~~~~l~av~~la~y~ 76 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEAS-LKSF----SPENKLERDFYQYRSYIALGQYDSVLSE---IKK---SSSPELQAVRLLAEYL 76 (290)
T ss_dssp HHHHHCTT-HHHHCHHHH-CHTS----TCHHHHHHHHHHHHHHHHTT-HHHHHHH---S-T---TSSCCCHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHhh-ccCC----CchhHHHHHHHHHHHHHHcCChhHHHHH---hcc---CCChhHHHHHHHHHHH
Confidence 344556788888876555 2221 1123445566778888888887755432 222 2256666666666555
Q ss_pred HhcCChhHHHHHHHHHHhCCCCC-ChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 016027 120 FRSKNVKDAERFWLEMRKENVTP-NVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEV 198 (396)
Q Consensus 120 ~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 198 (396)
...++-+.++.-+++....+..+ +..........+...|++++|++++... .+.......+.++.+.++++.|
T Consensus 77 ~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA 150 (290)
T PF04733_consen 77 SSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLA 150 (290)
T ss_dssp CTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHH
T ss_pred hCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHH
Confidence 44455556666555554443332 2333333445666778888888877542 3566777778888899999999
Q ss_pred HHHHHHHHhcCCCCchhhHHHHHHHHH----hcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHH
Q 016027 199 SGMMERFLVCEPGPTMVTYTSLVKGYC----KAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRK 274 (396)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 274 (396)
.+.++.|.+.+ .| .+...++.++. ..+.+.+|..+|+++... ..+++.+.+.+..+....|++++|.+++.+
T Consensus 151 ~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~ 226 (290)
T PF04733_consen 151 EKELKNMQQID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEE 226 (290)
T ss_dssp HHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 99999887742 22 33444444433 234688999999998765 556888888888888899999999999988
Q ss_pred HHHCCCCCChhhHHHHHHHHHhcCCH-HHHHHHHHHHHHc
Q 016027 275 MIESGYTPDRLTYHILLKILCKEDKL-DLAIQVSKEMKCR 313 (396)
Q Consensus 275 ~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~ 313 (396)
....+.. ++.+...++.+....|+. +.+.+.+.++...
T Consensus 227 al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 227 ALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 8776533 566777777777777877 6677788887765
No 96
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.27 E-value=4.5e-07 Score=78.71 Aligned_cols=336 Identities=12% Similarity=0.115 Sum_probs=210.0
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHH
Q 016027 34 DTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYN 113 (396)
Q Consensus 34 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 113 (396)
..|...++.+..+|+...-...|+++...-++ .....+|...+.-....+-++-+..++++..+. ++..-+
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpv---tqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~------~P~~~e 173 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPV---TQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV------APEARE 173 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCch---HhhccchHHHHHHHHhCCChHHHHHHHHHHHhc------CHHHHH
Confidence 38899999999999999999999999886422 334567888888888889999999999999887 334466
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCC------CC------------------------------------CC--hhHHHH
Q 016027 114 ILLNGWFRSKNVKDAERFWLEMRKEN------VT------------------------------------PN--VVTYGT 149 (396)
Q Consensus 114 ~l~~~~~~~~~~~~a~~~~~~~~~~~------~~------------------------------------~~--~~~~~~ 149 (396)
..+..+.+.+++++|-+.+...+... .+ +| -..|..
T Consensus 174 eyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~S 253 (835)
T KOG2047|consen 174 EYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCS 253 (835)
T ss_pred HHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHH
Confidence 67777888888888887776654310 00 01 124678
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-------------------------------------
Q 016027 150 LVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEA------------------------------------- 192 (396)
Q Consensus 150 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------------------------------------- 192 (396)
|...|.+.|.+++|..+|++.... ..+..-|+.+.++|+.-
T Consensus 254 LAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~ 331 (835)
T KOG2047|consen 254 LADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMN 331 (835)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHh
Confidence 888899999999999998887665 22222333333332211
Q ss_pred -----------------------------CCHHHHHHHHHHHHhcCCCC------chhhHHHHHHHHHhcCChHHHHHHH
Q 016027 193 -----------------------------GRFEEVSGMMERFLVCEPGP------TMVTYTSLVKGYCKAGDLEGASKIL 237 (396)
Q Consensus 193 -----------------------------~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~ 237 (396)
|+..+-...|.++... +.| -...|..+...|-..|+.+.|..+|
T Consensus 332 rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvif 410 (835)
T KOG2047|consen 332 RRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIF 410 (835)
T ss_pred ccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHH
Confidence 1111222222222211 111 1234566667777777777777777
Q ss_pred HHHHHCCCCCC---hhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCC-----------C------ChhhHHHHHHHHHhc
Q 016027 238 KMMISRGFLPS---PTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYT-----------P------DRLTYHILLKILCKE 297 (396)
Q Consensus 238 ~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----------~------~~~~~~~l~~~~~~~ 297 (396)
++..+...+.- ..+|......-.+..+++.|+++++......-. + +...|..++..-...
T Consensus 411 eka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~ 490 (835)
T KOG2047|consen 411 EKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESL 490 (835)
T ss_pred HHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHh
Confidence 77776533311 234445555555667777777777665432111 0 122344444445556
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHH---cCCchHH
Q 016027 298 DKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHY-LTFKRLNDEFKK---RGMTALA 373 (396)
Q Consensus 298 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~---~g~~~~A 373 (396)
|-++....+++++.+..+. ++.........+-.+.-++++.+++++-+..=..|+. ..|+..+.-+.+ .-..+.|
T Consensus 491 gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEra 569 (835)
T KOG2047|consen 491 GTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERA 569 (835)
T ss_pred ccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 7777777788887776554 5555555555566666778888887776653224443 467766665533 2357888
Q ss_pred HHHHHHHhc
Q 016027 374 QKLCNVMSS 382 (396)
Q Consensus 374 ~~~~~~~~~ 382 (396)
..+|++..+
T Consensus 570 RdLFEqaL~ 578 (835)
T KOG2047|consen 570 RDLFEQALD 578 (835)
T ss_pred HHHHHHHHh
Confidence 888888655
No 97
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.26 E-value=2.5e-07 Score=79.38 Aligned_cols=127 Identities=13% Similarity=0.118 Sum_probs=98.4
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHH
Q 016027 34 DTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYN 113 (396)
Q Consensus 34 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 113 (396)
..+.+=+..+...|++++|.+...++.... |.+..++..-+-++.+.+++++|+.+.+.-... ..+...+.
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~-----pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~----~~~~~~~f 83 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIV-----PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL----LVINSFFF 83 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcC-----CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh----hhcchhhH
Confidence 456667778899999999999999999863 888888999999999999999999776653321 11222223
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCC-ChhHHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 016027 114 ILLNGWFRSKNVKDAERFWLEMRKENVTP-NVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEG 174 (396)
Q Consensus 114 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 174 (396)
.-+.+..+.+..++|+..++- ..+ +..+...-...+.+.|++++|+++|+.+.+.+
T Consensus 84 EKAYc~Yrlnk~Dealk~~~~-----~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~ 140 (652)
T KOG2376|consen 84 EKAYCEYRLNKLDEALKTLKG-----LDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNN 140 (652)
T ss_pred HHHHHHHHcccHHHHHHHHhc-----ccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 445667789999999999882 333 34477777888999999999999999997764
No 98
>PLN02789 farnesyltranstransferase
Probab=99.25 E-value=1.4e-08 Score=84.28 Aligned_cols=208 Identities=13% Similarity=0.029 Sum_probs=163.0
Q ss_pred hhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcC-CHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHH
Q 016027 4 VLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAG-MVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSL 82 (396)
Q Consensus 4 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 82 (396)
.+...++.++|+.++.+++.. .|+ +..+|..-..++...| ++++++..++++...+ |.+..+|+.....+
T Consensus 46 ~l~~~e~serAL~lt~~aI~l--nP~--~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-----pknyqaW~~R~~~l 116 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRL--NPG--NYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-----PKNYQIWHHRRWLA 116 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHH--Cch--hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-----CcchHHhHHHHHHH
Confidence 456678999999999999984 565 3568888888888888 6899999999999875 88888899888777
Q ss_pred HHcCCh--HHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHcc---
Q 016027 83 CKQGRV--KAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRL--- 157 (396)
Q Consensus 83 ~~~~~~--~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 157 (396)
.+.|+. +++++.++++...++. |..+|+...-++...|+++++++.++++++.++. |..+|+.....+.+.
T Consensus 117 ~~l~~~~~~~el~~~~kal~~dpk---Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l 192 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLDAK---NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLL 192 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhCcc---cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhcccc
Confidence 777763 7789999999987665 8899999999999999999999999999998765 777887776665544
Q ss_pred CC----HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHh
Q 016027 158 RR----VDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVE----AGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCK 226 (396)
Q Consensus 158 ~~----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 226 (396)
|. .++.+.+...++... +-+...|+-+...+.. .+...+|...+.+....++ .+......|+..|+.
T Consensus 193 ~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~-~s~~al~~l~d~~~~ 267 (320)
T PLN02789 193 GGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS-NHVFALSDLLDLLCE 267 (320)
T ss_pred ccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC-CcHHHHHHHHHHHHh
Confidence 22 246777777777764 5567777777777766 2445678888888777544 366777888888875
No 99
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.25 E-value=7.7e-09 Score=92.37 Aligned_cols=250 Identities=18% Similarity=0.176 Sum_probs=167.5
Q ss_pred HHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHh
Q 016027 20 DKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRK 99 (396)
Q Consensus 20 ~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 99 (396)
.+-..+..|+ ..+|..+|..|+..|+.+.|- +|..|.-. +.|.+..+|+.++.+....++.+.+.
T Consensus 15 ~~e~~gi~Pn---RvtyqsLiarYc~~gdieaat-if~fm~~k----sLpv~e~vf~~lv~sh~~And~Enpk------- 79 (1088)
T KOG4318|consen 15 LHEISGILPN---RVTYQSLIARYCTKGDIEAAT-IFPFMEIK----SLPVREGVFRGLVASHKEANDAENPK------- 79 (1088)
T ss_pred HHHHhcCCCc---hhhHHHHHHHHcccCCCcccc-chhhhhcc----cccccchhHHHHHhcccccccccCCC-------
Confidence 3444567898 668999999999999999988 88877765 46888888999999988888877764
Q ss_pred hccCCCCCChHHHHHHHHHHHhcCChhH---HHHHHHHHH----hCCCCCChhHHHH--------------HHHHHHccC
Q 016027 100 ELDQSWAPTVRVYNILLNGWFRSKNVKD---AERFWLEMR----KENVTPNVVTYGT--------------LVEGYCRLR 158 (396)
Q Consensus 100 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~----~~~~~~~~~~~~~--------------l~~~~~~~~ 158 (396)
.|...+|..|..+|...||... +.+.+.... ..|+......+-. .+....-.|
T Consensus 80 ------ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eg 153 (1088)
T KOG4318|consen 80 ------EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEG 153 (1088)
T ss_pred ------CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHH
Confidence 4678899999999999998654 333222221 2233222222211 122222234
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHH
Q 016027 159 RVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEA-GRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKIL 237 (396)
Q Consensus 159 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 237 (396)
-++.+++++..+..... .. .+..+++-+... ..+++-..+.+...+ .+++.+|..++.+-.-.|+.+.|..++
T Consensus 154 lwaqllkll~~~Pvsa~-~~--p~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll 227 (1088)
T KOG4318|consen 154 LWAQLLKLLAKVPVSAW-NA--PFQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLL 227 (1088)
T ss_pred HHHHHHHHHhhCCcccc-cc--hHHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHH
Confidence 44444444433321110 00 111123322222 234444444444433 478889999999999999999999999
Q ss_pred HHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 016027 238 KMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDK 299 (396)
Q Consensus 238 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 299 (396)
.+|.+.|++.+.+-|..++-+ .++...++.+++-|.+.|+.|+..|+...+..+...|.
T Consensus 228 ~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 228 YEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 999999999888888877765 77788888888899999999999999888777776444
No 100
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.24 E-value=4.8e-09 Score=84.67 Aligned_cols=188 Identities=13% Similarity=0.032 Sum_probs=135.5
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCch---hHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCC
Q 016027 32 SKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGA---SLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPT 108 (396)
Q Consensus 32 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 108 (396)
....+..++..+...|++++|+..|+++.... |.++ .++..++.++...|++++|...++++.+..|+....
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 106 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY-----PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA 106 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch
Confidence 46789999999999999999999999998864 4333 577889999999999999999999998876653333
Q ss_pred hHHHHHHHHHHHhc--------CChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHH
Q 016027 109 VRVYNILLNGWFRS--------KNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAI 180 (396)
Q Consensus 109 ~~~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 180 (396)
...+..+..++... |++++|.+.|+.+....+. +...+..+..... ... .. ..
T Consensus 107 ~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~~------~~--------~~ 167 (235)
T TIGR03302 107 DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LRN------RL--------AG 167 (235)
T ss_pred HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HHH------HH--------HH
Confidence 33566666666654 7788999999998876322 2223322221111 000 00 01
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CchhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 016027 181 VYNTVIDGLVEAGRFEEVSGMMERFLVCEPG--PTMVTYTSLVKGYCKAGDLEGASKILKMMISR 243 (396)
Q Consensus 181 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 243 (396)
....+...+.+.|++++|+..++.+....+. .....+..+..++...|++++|..+++.+...
T Consensus 168 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 168 KELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 1124566788999999999999998876442 23567888999999999999999998888765
No 101
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.16 E-value=1.9e-08 Score=81.25 Aligned_cols=190 Identities=11% Similarity=0.010 Sum_probs=136.0
Q ss_pred CCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh--hH
Q 016027 69 DSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNV--VT 146 (396)
Q Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~ 146 (396)
+..+..+..++..+...|++++|...|+++....|..+.....+..+..++...|++++|...++++.+..+.... .+
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 5667788899999999999999999999998875543223357788899999999999999999999876432111 24
Q ss_pred HHHHHHHHHcc--------CCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhH
Q 016027 147 YGTLVEGYCRL--------RRVDRAIRLVKEMRKEGIEPNA-IVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTY 217 (396)
Q Consensus 147 ~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 217 (396)
+..+..++... |++++|.+.++.+.+. .|+. .....+..... ... .. ....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~------~~--------~~~~ 169 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRN------RL--------AGKE 169 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHH------HH--------HHHH
Confidence 55555555544 7788899999988876 3332 22222211110 000 00 0112
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCC--CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 016027 218 TSLVKGYCKAGDLEGASKILKMMISRGF--LPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIES 278 (396)
Q Consensus 218 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 278 (396)
..+...+.+.|++++|...+....+... +.....+..+..++...|++++|..+++.+...
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 2566789999999999999999987632 223568889999999999999999999988765
No 102
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.15 E-value=2.5e-07 Score=90.15 Aligned_cols=342 Identities=12% Similarity=0.009 Sum_probs=216.3
Q ss_pred hhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccC--CCC--chhHHHHHHH
Q 016027 5 LAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKN--FDS--GASLFEILLD 80 (396)
Q Consensus 5 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~--~~~~~~~l~~ 80 (396)
+...|+++.+..++..+-......+ .......+..+...|++++|...+..+...-...+ .++ .......+..
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~---~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~ 460 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLEN---PRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQ 460 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcC---cchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHH
Confidence 3456777776666544311100111 22344556667789999999999988765321100 011 1223344556
Q ss_pred HHHHcCChHHHHHHHHHHhhccCCCCC--ChHHHHHHHHHHHhcCChhHHHHHHHHHHhC----CCC-CChhHHHHHHHH
Q 016027 81 SLCKQGRVKAASEYFHKRKELDQSWAP--TVRVYNILLNGWFRSKNVKDAERFWLEMRKE----NVT-PNVVTYGTLVEG 153 (396)
Q Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~ 153 (396)
.+...|++++|...++.+....+...+ .....+.+...+...|++++|...+.+.... |.. ....++..+...
T Consensus 461 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~ 540 (903)
T PRK04841 461 VAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEI 540 (903)
T ss_pred HHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence 677899999999999998763222111 1234566677778899999999999887643 111 112345666778
Q ss_pred HHccCCHHHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCCchhhHHHHHH
Q 016027 154 YCRLRRVDRAIRLVKEMRKE----GIE--P-NAIVYNTVIDGLVEAGRFEEVSGMMERFLVC----EPGPTMVTYTSLVK 222 (396)
Q Consensus 154 ~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~ 222 (396)
+...|++++|...+++.... +.. + ....+..+...+...|++++|...+.+.... +.......+..+..
T Consensus 541 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 620 (903)
T PRK04841 541 LFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAK 620 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHH
Confidence 88999999999998887653 211 1 2233445566777889999999998887653 11112344555677
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCC-ChhhH-----HHHHHHHhccCCHHHHHHHHHHHHHCCCCCCh---hhHHHHHHH
Q 016027 223 GYCKAGDLEGASKILKMMISRGFLP-SPTTY-----NYFFRYFSKFGKVEDAMNLYRKMIESGYTPDR---LTYHILLKI 293 (396)
Q Consensus 223 ~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~ 293 (396)
.+...|+++.|...+.......... ....+ ...+..+...|+.+.|..++............ .....+..+
T Consensus 621 ~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~ 700 (903)
T PRK04841 621 ISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARA 700 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHH
Confidence 8888999999999998875431110 11111 11224445678999999988775442211111 113456677
Q ss_pred HHhcCCHHHHHHHHHHHHHc----CCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 016027 294 LCKEDKLDLAIQVSKEMKCR----GCDI-DLDTSTMLIHLLCRMYKFDEASAEFEDMIRRG 349 (396)
Q Consensus 294 ~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 349 (396)
+...|+.++|...++++... +..+ ...+...+..++.+.|+.++|...+.+..+..
T Consensus 701 ~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 701 QILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 88899999999999988753 2221 22456667788899999999999999998743
No 103
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.14 E-value=9.7e-08 Score=89.53 Aligned_cols=207 Identities=14% Similarity=0.089 Sum_probs=100.4
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHH
Q 016027 32 SKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRV 111 (396)
Q Consensus 32 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 111 (396)
+.-.|...+....+.++.++|.+++++++..-....-..-..+|.++++.....|.-+...++|+++.+.. ....+
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc----d~~~V 1532 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC----DAYTV 1532 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc----chHHH
Confidence 34455566666666666666666666555531111011122344444444444455555555555555431 01334
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHH
Q 016027 112 YNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPN---AIVYNTVIDG 188 (396)
Q Consensus 112 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~ 188 (396)
|..|...|.+.+++++|.++++.|.+. +.-....|...+..+.+.++-+.|..++.+..+. -|. .....-.+..
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQL 1609 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHH
Confidence 455555555555555555555555544 1124445555555555555555555555555443 121 2222233333
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 016027 189 LVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFL 246 (396)
Q Consensus 189 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 246 (396)
-.+.|+.+.+..+|+..+...|. -...|+..+..-.+.|+.+.+..+|+++...++.
T Consensus 1610 EFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred HhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 44455555555555555544332 3345555555555555555555555555554443
No 104
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.14 E-value=1.8e-07 Score=86.64 Aligned_cols=239 Identities=13% Similarity=0.049 Sum_probs=162.3
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHH
Q 016027 32 SKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRV 111 (396)
Q Consensus 32 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 111 (396)
...+|..|+..+...|++++|+++.+...... |.....|..++..+...++..++.-+
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-----P~~i~~yy~~G~l~~q~~~~~~~~lv----------------- 87 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEH-----KKSISALYISGILSLSRRPLNDSNLL----------------- 87 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-----CcceehHHHHHHHHHhhcchhhhhhh-----------------
Confidence 36799999999999999999999999887764 77777888888888888886555444
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 016027 112 YNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVE 191 (396)
Q Consensus 112 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 191 (396)
.++.......++..+..++..|...+ -+..++..++.+|-+.|+.+++..+|+++++.. +-++.+.|.+...|..
T Consensus 88 --~~l~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae 162 (906)
T PRK14720 88 --NLIDSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEE 162 (906)
T ss_pred --hhhhhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHH
Confidence 33333444455555555555555532 245578888888989999999999999998886 6678888888888888
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHH
Q 016027 192 AGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNL 271 (396)
Q Consensus 192 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 271 (396)
. +.++|.+++.++... +...+++..+.+++..+....+. +...+..+.+.....-
T Consensus 163 ~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~-d~d~f~~i~~ki~~~~-------- 217 (906)
T PRK14720 163 E-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSD-DFDFFLRIERKVLGHR-------- 217 (906)
T ss_pred h-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcc-cchHHHHHHHHHHhhh--------
Confidence 8 888888888887653 55566777888888887776322 3223222222211110
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 016027 272 YRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLC 330 (396)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 330 (396)
+..--..++-.+-..|...++++++..+++.+.+.... |.....-++.+|.
T Consensus 218 -------~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 218 -------EFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred -------ccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 11112334444556666777777777777777776544 5555666666665
No 105
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.13 E-value=4.7e-09 Score=81.20 Aligned_cols=155 Identities=10% Similarity=0.071 Sum_probs=114.1
Q ss_pred hhhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHH
Q 016027 3 KVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSL 82 (396)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 82 (396)
..|...|++............ |. ..+...++.++++..++...+.+ |.+...|..++..|
T Consensus 24 ~~Y~~~g~~~~v~~~~~~~~~----~~-----------~~~~~~~~~~~~i~~l~~~L~~~-----P~~~~~w~~Lg~~~ 83 (198)
T PRK10370 24 GSYLLSPKWQAVRAEYQRLAD----PL-----------HQFASQQTPEAQLQALQDKIRAN-----PQNSEQWALLGEYY 83 (198)
T ss_pred HHHHHcchHHHHHHHHHHHhC----cc-----------ccccCchhHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHH
Confidence 457778888776554322222 11 01113667788888888888875 88888888888889
Q ss_pred HHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHH-HhcCC--hhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCC
Q 016027 83 CKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGW-FRSKN--VKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRR 159 (396)
Q Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 159 (396)
...|++++|...|+++...+|. +...+..+..++ ...|+ .++|.+++++..+..+. +..++..+...+...|+
T Consensus 84 ~~~g~~~~A~~a~~~Al~l~P~---~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~ 159 (198)
T PRK10370 84 LWRNDYDNALLAYRQALQLRGE---NAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFMQAD 159 (198)
T ss_pred HHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCC
Confidence 8999999999999988887655 777788887764 56676 48899999888887544 77788888888888899
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHH
Q 016027 160 VDRAIRLVKEMRKEGIEPNAIVY 182 (396)
Q Consensus 160 ~~~a~~~~~~~~~~~~~~~~~~~ 182 (396)
+++|+..|+++.+.. +|+..-+
T Consensus 160 ~~~Ai~~~~~aL~l~-~~~~~r~ 181 (198)
T PRK10370 160 YAQAIELWQKVLDLN-SPRVNRT 181 (198)
T ss_pred HHHHHHHHHHHHhhC-CCCccHH
Confidence 999999998888874 4454443
No 106
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.12 E-value=5.1e-09 Score=76.64 Aligned_cols=121 Identities=11% Similarity=-0.093 Sum_probs=97.8
Q ss_pred HHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHH
Q 016027 15 WCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEY 94 (396)
Q Consensus 15 ~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 94 (396)
..+++++++. .|+ .+...+..+...|++++|...|+++...+ |.+..++..++.++...|++++|...
T Consensus 13 ~~~~~~al~~--~p~-----~~~~~g~~~~~~g~~~~A~~~~~~al~~~-----P~~~~a~~~lg~~~~~~g~~~~A~~~ 80 (144)
T PRK15359 13 EDILKQLLSV--DPE-----TVYASGYASWQEGDYSRAVIDFSWLVMAQ-----PWSWRAHIALAGTWMMLKEYTTAINF 80 (144)
T ss_pred HHHHHHHHHc--CHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3456777773 454 46678888999999999999999998875 88889999999999999999999999
Q ss_pred HHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHH
Q 016027 95 FHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLV 151 (396)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 151 (396)
|+.+...+|+ +...+..+..++...|++++|...|+..++..+. +...+....
T Consensus 81 y~~Al~l~p~---~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~-~~~~~~~~~ 133 (144)
T PRK15359 81 YGHALMLDAS---HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYA-DASWSEIRQ 133 (144)
T ss_pred HHHHHhcCCC---CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHH
Confidence 9999987655 7888899999999999999999999998876422 444444433
No 107
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.11 E-value=4.1e-08 Score=75.75 Aligned_cols=167 Identities=14% Similarity=0.100 Sum_probs=111.0
Q ss_pred CCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHH
Q 016027 69 DSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYG 148 (396)
Q Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 148 (396)
|.+..+ ..+...+...|+-+.+..+........ ..+.......+....+.|++..|...+.+..... ++|..+|+
T Consensus 64 p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~---~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~ 138 (257)
T COG5010 64 PEDLSI-AKLATALYLRGDADSSLAVLQKSAIAY---PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWN 138 (257)
T ss_pred cchHHH-HHHHHHHHhcccccchHHHHhhhhccC---cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhh
Confidence 555555 666666777777777776666654422 2255555566777777777777777777766553 44777777
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcC
Q 016027 149 TLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAG 228 (396)
Q Consensus 149 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 228 (396)
.+.-+|.+.|+++.|..-|.+..+.. +-++...+.+...+.-.|+++.|..++......+. -+..+-..+.......|
T Consensus 139 ~lgaaldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~-ad~~v~~NLAl~~~~~g 216 (257)
T COG5010 139 LLGAALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA-ADSRVRQNLALVVGLQG 216 (257)
T ss_pred HHHHHHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC-CchHHHHHHHHHHhhcC
Confidence 77777777777777777777776652 34556667777777777777777777777666533 35666666777777777
Q ss_pred ChHHHHHHHHHHHH
Q 016027 229 DLEGASKILKMMIS 242 (396)
Q Consensus 229 ~~~~a~~~~~~~~~ 242 (396)
+++.|.++...-..
T Consensus 217 ~~~~A~~i~~~e~~ 230 (257)
T COG5010 217 DFREAEDIAVQELL 230 (257)
T ss_pred ChHHHHhhcccccc
Confidence 77777777655443
No 108
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.10 E-value=1.8e-07 Score=82.29 Aligned_cols=241 Identities=12% Similarity=0.115 Sum_probs=192.8
Q ss_pred CCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhH
Q 016027 67 NFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVT 146 (396)
Q Consensus 67 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 146 (396)
..||--..-..+...+...|-...|..+|++.. .|...+.+|...|+..+|..+..+..++ +|+...
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erle-----------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~l 459 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERLE-----------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRL 459 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhHH-----------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchh
Confidence 467777777889999999999999999998754 5777888999999999999999888773 679999
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHh
Q 016027 147 YGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCK 226 (396)
Q Consensus 147 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 226 (396)
|..+........-+++|.++.+..-.. .-..+.....+.++++++.+.|+...+.++ ....+|-.+.-+..+
T Consensus 460 yc~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~np-lq~~~wf~~G~~ALq 531 (777)
T KOG1128|consen 460 YCLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINP-LQLGTWFGLGCAALQ 531 (777)
T ss_pred HHHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCc-cchhHHHhccHHHHH
Confidence 999998887777888888887765332 222333334457999999999999888755 467889999999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 016027 227 AGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQV 306 (396)
Q Consensus 227 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 306 (396)
.+++..|.+.|....... +.+...||.+-.+|.+.++..+|...+.+..+.+ .-+...|...+....+.|.++.|.+.
T Consensus 532 lek~q~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A 609 (777)
T KOG1128|consen 532 LEKEQAAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKA 609 (777)
T ss_pred HhhhHHHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHH
Confidence 999999999999998864 3367889999999999999999999999999987 44677788888888999999999999
Q ss_pred HHHHHHcCC-CCChhhHHHHHHHHH
Q 016027 307 SKEMKCRGC-DIDLDTSTMLIHLLC 330 (396)
Q Consensus 307 ~~~~~~~~~-~~~~~~~~~l~~~~~ 330 (396)
+.++..... .-|..+...++....
T Consensus 610 ~~rll~~~~~~~d~~vl~~iv~~~~ 634 (777)
T KOG1128|consen 610 YHRLLDLRKKYKDDEVLLIIVRTVL 634 (777)
T ss_pred HHHHHHhhhhcccchhhHHHHHHHH
Confidence 998875311 125555555554443
No 109
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.09 E-value=3e-08 Score=76.77 Aligned_cols=153 Identities=7% Similarity=0.064 Sum_probs=120.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHH
Q 016027 38 ILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLN 117 (396)
Q Consensus 38 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~ 117 (396)
..+..|...|+++......+.... +.. .+...++.+++...++...+.+|. +...|..+..
T Consensus 21 ~~~~~Y~~~g~~~~v~~~~~~~~~-------~~~---------~~~~~~~~~~~i~~l~~~L~~~P~---~~~~w~~Lg~ 81 (198)
T PRK10370 21 LCVGSYLLSPKWQAVRAEYQRLAD-------PLH---------QFASQQTPEAQLQALQDKIRANPQ---NSEQWALLGE 81 (198)
T ss_pred HHHHHHHHcchHHHHHHHHHHHhC-------ccc---------cccCchhHHHHHHHHHHHHHHCCC---CHHHHHHHHH
Confidence 345578899999887655433221 110 122367778888899998887665 8899999999
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHH-HccCC--HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 016027 118 GWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGY-CRLRR--VDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGR 194 (396)
Q Consensus 118 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 194 (396)
.+...|++++|...|++..+.... +...+..+..++ ...|+ .++|.+++++..+.+ +.+...+..+...+...|+
T Consensus 82 ~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~ 159 (198)
T PRK10370 82 YYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQAD 159 (198)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCC
Confidence 999999999999999999987644 777888888764 66676 599999999999985 5577888889999999999
Q ss_pred HHHHHHHHHHHHhcCCC
Q 016027 195 FEEVSGMMERFLVCEPG 211 (396)
Q Consensus 195 ~~~a~~~~~~~~~~~~~ 211 (396)
+++|+..|+++.+..+.
T Consensus 160 ~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 160 YAQAIELWQKVLDLNSP 176 (198)
T ss_pred HHHHHHHHHHHHhhCCC
Confidence 99999999999987553
No 110
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.08 E-value=2e-07 Score=84.75 Aligned_cols=360 Identities=11% Similarity=0.007 Sum_probs=215.9
Q ss_pred CchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChH
Q 016027 10 EFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVK 89 (396)
Q Consensus 10 ~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 89 (396)
+...|+..|-+.++. .|+. ..+|..++..|...-+...|.+.|+++.+.+ +.+......+...|+...+++
T Consensus 473 ~~~~al~ali~alrl--d~~~--apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-----atdaeaaaa~adtyae~~~we 543 (1238)
T KOG1127|consen 473 NSALALHALIRALRL--DVSL--APAFAFLGQIYRDSDDMKRAKKCFDKAFELD-----ATDAEAAAASADTYAEESTWE 543 (1238)
T ss_pred hHHHHHHHHHHHHhc--ccch--hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----chhhhhHHHHHHHhhccccHH
Confidence 467788888777774 4442 4589999999999999999999999999987 788888999999999999999
Q ss_pred HHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHH
Q 016027 90 AASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKE 169 (396)
Q Consensus 90 ~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 169 (396)
.|..+.-...+..+. ..-...|....-.|.+.+++..+..-|+......+. |...|..++.+|...|.+..|+++|.+
T Consensus 544 ~a~~I~l~~~qka~a-~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~k 621 (1238)
T KOG1127|consen 544 EAFEICLRAAQKAPA-FACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTK 621 (1238)
T ss_pred HHHHHHHHHhhhchH-HHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhh
Confidence 999985554443211 011223444555677788999999999988877544 888999999999999999999999988
Q ss_pred HHHcCCCCCHHHHHH--HHHHHHHcCCHHHHHHHHHHHHhcCC------CCchhhHHHHHHHHHhcCChHHHHHH-----
Q 016027 170 MRKEGIEPNAIVYNT--VIDGLVEAGRFEEVSGMMERFLVCEP------GPTMVTYTSLVKGYCKAGDLEGASKI----- 236 (396)
Q Consensus 170 ~~~~~~~~~~~~~~~--l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~a~~~----- 236 (396)
.... .|+. +|.. ..-..+..|.+.+|+..+........ .--..++..+...+...|-...+.+.
T Consensus 622 As~L--rP~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksi 698 (1238)
T KOG1127|consen 622 ASLL--RPLS-KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSI 698 (1238)
T ss_pred hHhc--CcHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 8765 3433 2222 22335667889988888877654211 11122222222222223322233333
Q ss_pred --HHHHHHCCCCCChhhHHHHHHHHh-----------------------ccCCH---H---HHHHHHHHHHHCCCCCChh
Q 016027 237 --LKMMISRGFLPSPTTYNYFFRYFS-----------------------KFGKV---E---DAMNLYRKMIESGYTPDRL 285 (396)
Q Consensus 237 --~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~---~---~a~~~~~~~~~~~~~~~~~ 285 (396)
|.-........+...|..+..+|. ..+.. + -+.+.+-.-.+ ...+..
T Consensus 699 e~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~ 776 (1238)
T KOG1127|consen 699 ESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMY 776 (1238)
T ss_pred HHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--Hhhccc
Confidence 322222211112222222222211 11111 0 00111100000 112233
Q ss_pred hHHHHHHHHHh----c----CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 016027 286 TYHILLKILCK----E----DKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTF 357 (396)
Q Consensus 286 ~~~~l~~~~~~----~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~ 357 (396)
+|..++..|.+ . .+...|...+.+.++..-. +..+|+.|.-. ...|++.-|.-.|-+-.... +....+|
T Consensus 777 ~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~an-n~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W 853 (1238)
T KOG1127|consen 777 PWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCAN-NEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQW 853 (1238)
T ss_pred hHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhc-cHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhhe
Confidence 44444443332 1 2234677777777665332 66666666654 55566666666665554432 3455677
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHhccchhhh
Q 016027 358 KRLNDEFKKRGMTALAQKLCNVMSSVPRSME 388 (396)
Q Consensus 358 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 388 (396)
..+...+.+..+++.|...|.+.+...+...
T Consensus 854 ~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl 884 (1238)
T KOG1127|consen 854 LNLGVLVLENQDFEHAEPAFSSVQSLDPLNL 884 (1238)
T ss_pred eccceeEEecccHHHhhHHHHhhhhcCchhh
Confidence 7777778888888888888888877766544
No 111
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.07 E-value=3.3e-07 Score=86.12 Aligned_cols=239 Identities=12% Similarity=0.119 Sum_probs=184.8
Q ss_pred HHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHc-CCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 016027 132 WLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKE-GIEP---NAIVYNTVIDGLVEAGRFEEVSGMMERFLV 207 (396)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 207 (396)
|+++.... +-+...|...|......++.++|.++.++++.. ++.- -...|.++++.-..-|.-+...++|+++.+
T Consensus 1447 ferlvrss-PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq 1525 (1710)
T KOG1070|consen 1447 FERLVRSS-PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ 1525 (1710)
T ss_pred HHHHHhcC-CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH
Confidence 34444432 225678888899999999999999999998865 1111 234677777777778888889999999987
Q ss_pred cCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCC-CChhh
Q 016027 208 CEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYT-PDRLT 286 (396)
Q Consensus 208 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~ 286 (396)
. .....+|..|...|.+.+.+++|.++++.|.+. +.-....|...+..+.+..+-+.|..++.++++.-++ -....
T Consensus 1526 y--cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~ 1602 (1710)
T KOG1070|consen 1526 Y--CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEF 1602 (1710)
T ss_pred h--cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHH
Confidence 4 334567889999999999999999999999987 3347788999999999999999999999998876221 13445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHHH
Q 016027 287 YHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHY--LTFKRLNDEF 364 (396)
Q Consensus 287 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~--~~~~~l~~~~ 364 (396)
....+..-.+.|+.+.++.+|+......++ ....|+.+++.-.++|+.+.+..+|++.+..++.|.. ..|...+.--
T Consensus 1603 IskfAqLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyE 1681 (1710)
T KOG1070|consen 1603 ISKFAQLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYE 1681 (1710)
T ss_pred HHHHHHHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHH
Confidence 566667777899999999999999877554 7889999999999999999999999999998877664 3455555444
Q ss_pred HHcCCchHHHH
Q 016027 365 KKRGMTALAQK 375 (396)
Q Consensus 365 ~~~g~~~~A~~ 375 (396)
-+.|+-+.+..
T Consensus 1682 k~~Gde~~vE~ 1692 (1710)
T KOG1070|consen 1682 KSHGDEKNVEY 1692 (1710)
T ss_pred HhcCchhhHHH
Confidence 55676554433
No 112
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.07 E-value=5.7e-06 Score=70.66 Aligned_cols=151 Identities=13% Similarity=0.123 Sum_probs=115.3
Q ss_pred hHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHH
Q 016027 230 LEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTP-DRLTYHILLKILCKEDKLDLAIQVSK 308 (396)
Q Consensus 230 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~ 308 (396)
.+....+++++...-...-.-+|..++....+....+.|..+|.++.+.+..+ +..+.++++..++ .++.+-|..+|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 55556666666554222233467788888888888999999999999887666 6667777777665 478899999999
Q ss_pred HHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHcCCchHHHHHHHHHhc
Q 016027 309 EMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHY--LTFKRLNDEFKKRGMTALAQKLCNVMSS 382 (396)
Q Consensus 309 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 382 (396)
.-.+.- .-++..-...+..+...++-..+..+|++.+..++.|+. ..|..++.--..-|+...+.++-+++..
T Consensus 426 LGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 426 LGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 877652 225566677888889999999999999999988666553 6899999888889999999888877533
No 113
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.06 E-value=1.1e-07 Score=73.39 Aligned_cols=165 Identities=12% Similarity=0.093 Sum_probs=129.1
Q ss_pred ChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 016027 108 TVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVID 187 (396)
Q Consensus 108 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 187 (396)
|... ..+...+...|+-+....+....... .+-+......++....+.|++..|+..+++..... ++|...++.+.-
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lga 142 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGA 142 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHH
Confidence 4444 56667777788888887777765443 23355666778888888999999999998888764 778889999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHH
Q 016027 188 GLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVED 267 (396)
Q Consensus 188 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 267 (396)
+|.+.|+++.|..-|.+..+..+ .+....+.+.-.+.-.|+++.|..++......+.. |..+-..+.......|++.+
T Consensus 143 aldq~Gr~~~Ar~ay~qAl~L~~-~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~ 220 (257)
T COG5010 143 ALDQLGRFDEARRAYRQALELAP-NEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFRE 220 (257)
T ss_pred HHHHccChhHHHHHHHHHHHhcc-CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHH
Confidence 99999999999999998888755 36677888888888899999999999888877433 67777778888888899999
Q ss_pred HHHHHHHHHH
Q 016027 268 AMNLYRKMIE 277 (396)
Q Consensus 268 a~~~~~~~~~ 277 (396)
|.++...-..
T Consensus 221 A~~i~~~e~~ 230 (257)
T COG5010 221 AEDIAVQELL 230 (257)
T ss_pred HHhhcccccc
Confidence 9888765443
No 114
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.04 E-value=1.1e-06 Score=78.52 Aligned_cols=181 Identities=12% Similarity=0.046 Sum_probs=116.7
Q ss_pred hhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhccccc----CCCCchhHHHHHH
Q 016027 4 VLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVK----NFDSGASLFEILL 79 (396)
Q Consensus 4 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~~~~~~l~ 79 (396)
.|...|+.+.|.+-.+ .++ |...|..++++|.+..+++-|.-.+..|....... ....+...-....
T Consensus 737 fyvtiG~MD~AfksI~-~Ik--------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvA 807 (1416)
T KOG3617|consen 737 FYVTIGSMDAAFKSIQ-FIK--------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVA 807 (1416)
T ss_pred EEEEeccHHHHHHHHH-HHh--------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHH
Confidence 4667789999977643 333 14589999999999999998888777665533211 0011113333445
Q ss_pred HHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCC
Q 016027 80 DSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRR 159 (396)
Q Consensus 80 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 159 (396)
......|-+++|+.+|++.... ..|=..|...|.|++|.++-+.=-. +. =..||.....-+-..++
T Consensus 808 vLAieLgMlEeA~~lYr~ckR~-----------DLlNKlyQs~g~w~eA~eiAE~~DR--iH-Lr~Tyy~yA~~Lear~D 873 (1416)
T KOG3617|consen 808 VLAIELGMLEEALILYRQCKRY-----------DLLNKLYQSQGMWSEAFEIAETKDR--IH-LRNTYYNYAKYLEARRD 873 (1416)
T ss_pred HHHHHHhhHHHHHHHHHHHHHH-----------HHHHHHHHhcccHHHHHHHHhhccc--ee-hhhhHHHHHHHHHhhcc
Confidence 5556789999999999987753 3334456678999999988664221 11 23466666666677788
Q ss_pred HHHHHHHHHHH----------HHcC---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 016027 160 VDRAIRLVKEM----------RKEG---------IEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLV 207 (396)
Q Consensus 160 ~~~a~~~~~~~----------~~~~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 207 (396)
.+.|+++|++. +... -..|...|.-....+-..|+.+.|+.+|..+..
T Consensus 874 i~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D 940 (1416)
T KOG3617|consen 874 IEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD 940 (1416)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh
Confidence 88888887653 2111 112444455555666677888888888877643
No 115
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.03 E-value=2.2e-07 Score=81.68 Aligned_cols=218 Identities=13% Similarity=0.057 Sum_probs=162.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHH
Q 016027 146 TYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYC 225 (396)
Q Consensus 146 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 225 (396)
.-..+...+...|-...|..+++++. .+...+.+|...|+..+|..+..+..+ -+|+...|..++....
T Consensus 400 ~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLH 468 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhcc
Confidence 33556677777788888888887653 455677788888888888888877776 3467778888877776
Q ss_pred hcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 016027 226 KAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQ 305 (396)
Q Consensus 226 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 305 (396)
...-+++|.++.+..... +-..+.....+.++++++.+.++.-.+.+ +.-..+|..+..+..+.++++.|.+
T Consensus 469 d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~ 540 (777)
T KOG1128|consen 469 DPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVK 540 (777)
T ss_pred ChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHH
Confidence 666677887777765443 22233333445788888888888877664 3356778878888888899999999
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhccc
Q 016027 306 VSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFKKRGMTALAQKLCNVMSSVP 384 (396)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 384 (396)
.|.......+. +...||.+-.+|.+.++-.+|...+.+..+.+ .-+...|...+-...+.|.+++|++.+.++...+
T Consensus 541 aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 541 AFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 99888876443 67889999999999999999999999998866 4455677777777788899999999988876543
No 116
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.01 E-value=9.4e-07 Score=82.04 Aligned_cols=241 Identities=12% Similarity=0.124 Sum_probs=173.2
Q ss_pred CCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHH
Q 016027 69 DSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYG 148 (396)
Q Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 148 (396)
|.+..++..|+..+...+++++|.++.+......|+ ....|..+...+.+.++..++..+
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~---~i~~yy~~G~l~~q~~~~~~~~lv----------------- 87 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKK---SISALYISGILSLSRRPLNDSNLL----------------- 87 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc---ceehHHHHHHHHHhhcchhhhhhh-----------------
Confidence 667888999999999999999999999988776544 444455555567777775555444
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcC
Q 016027 149 TLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAG 228 (396)
Q Consensus 149 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 228 (396)
.++.......++.-+..++..+.+. .-+...+..+..+|.+.|+.++|..+|+++++..+ -++.+.+.+...|+..
T Consensus 88 ~~l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~-~n~~aLNn~AY~~ae~- 163 (906)
T PRK14720 88 NLIDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADR-DNPEIVKKLATSYEEE- 163 (906)
T ss_pred hhhhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHh-
Confidence 3334444455554555555566654 33556788899999999999999999999999875 4888999999999999
Q ss_pred ChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 016027 229 DLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSK 308 (396)
Q Consensus 229 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 308 (396)
+.++|.+++.+.... +...+++..+..+|.++....+. +...+..+.+.....-...
T Consensus 164 dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~-d~d~f~~i~~ki~~~~~~~------- 220 (906)
T PRK14720 164 DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSD-DFDFFLRIERKVLGHREFT------- 220 (906)
T ss_pred hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcc-cchHHHHHHHHHHhhhccc-------
Confidence 999999998887764 56667899999999999887422 3333333333332221111
Q ss_pred HHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 016027 309 EMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFK 365 (396)
Q Consensus 309 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 365 (396)
--..++..+-..|-..++|+++..+++.+++.. +-|......++.+|.
T Consensus 221 --------~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 221 --------RLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred --------hhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 133455556667888899999999999999865 346667777877775
No 117
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.00 E-value=2.2e-07 Score=85.08 Aligned_cols=137 Identities=7% Similarity=0.040 Sum_probs=94.4
Q ss_pred CCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhH
Q 016027 67 NFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVT 146 (396)
Q Consensus 67 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 146 (396)
.++.++.++..|+.+....|.+++|..+++.+.+..|+ +......++..+.+.+++++|+..+++.....+. +...
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd---~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~ 156 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD---SSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SARE 156 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC---cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHH
Confidence 35666777777777777777777777777777766544 5566666777777777777777777777766433 5556
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 016027 147 YGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVC 208 (396)
Q Consensus 147 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 208 (396)
...+..++.+.|++++|..+|+++...+ +-+..++..+..++...|+.++|...|++..+.
T Consensus 157 ~~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 157 ILLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6666777777777777777777777642 344666777777777777777777777776654
No 118
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.99 E-value=6.2e-07 Score=79.26 Aligned_cols=109 Identities=19% Similarity=0.270 Sum_probs=59.2
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCh
Q 016027 151 VEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDL 230 (396)
Q Consensus 151 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 230 (396)
+.+.....+|.+|+.+++.+.++. .-...|..+...|...|+++.|.++|.+. ..++-.+..|.+.|+|
T Consensus 739 ieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccH
Confidence 334445556666666666666552 23334555666666667777666666543 1244455666667777
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHH
Q 016027 231 EGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLY 272 (396)
Q Consensus 231 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 272 (396)
++|.++-++... .......|.+-..-.-..|++.+|.++|
T Consensus 808 ~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 808 EDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred HHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 666666554432 2223334444444444555555555544
No 119
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.95 E-value=1.9e-07 Score=85.50 Aligned_cols=143 Identities=11% Similarity=0.049 Sum_probs=125.2
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHH
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVY 112 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 112 (396)
..++..|+.+..+.|++++|..+++.+.+.. |.+..++..++..+.+.+++++|+..++++...+|. +....
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-----Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~---~~~~~ 157 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRF-----PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS---SAREI 157 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-----CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC---CHHHH
Confidence 6799999999999999999999999999985 888999999999999999999999999999987655 78888
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 016027 113 NILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTV 185 (396)
Q Consensus 113 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 185 (396)
..+..++.+.|++++|..+|+++...+. -+..++..+...+...|+.++|...|+...+.- .+....|+..
T Consensus 158 ~~~a~~l~~~g~~~~A~~~y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~ 228 (694)
T PRK15179 158 LLEAKSWDEIGQSEQADACFERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRR 228 (694)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHH
Confidence 9999999999999999999999998543 368899999999999999999999999998763 3444444433
No 120
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.95 E-value=3.2e-06 Score=65.61 Aligned_cols=251 Identities=15% Similarity=0.119 Sum_probs=152.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHH
Q 016027 40 IRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGW 119 (396)
Q Consensus 40 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 119 (396)
++-+.-.|++..++..-.+.... +.+...-..+.++|...|++.....-... +-.|.......+....
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~------~~~~e~d~y~~raylAlg~~~~~~~eI~~------~~~~~lqAvr~~a~~~ 82 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSS------KTDVELDVYMYRAYLALGQYQIVISEIKE------GKATPLQAVRLLAEYL 82 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhccc------cchhHHHHHHHHHHHHccccccccccccc------ccCChHHHHHHHHHHh
Confidence 45566678887776655544433 35556666677888888877654433222 2233344444444444
Q ss_pred HhcCChhHHH-HHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 016027 120 FRSKNVKDAE-RFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEV 198 (396)
Q Consensus 120 ~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 198 (396)
..-++.++-+ ++.+.+.......+......-+..|++.+++++|++...... +......-+..+.+..+.+-|
T Consensus 83 ~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A 156 (299)
T KOG3081|consen 83 ELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLA 156 (299)
T ss_pred hCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHH
Confidence 3344444333 344444444334343444455567788888888888776521 333333444556677788888
Q ss_pred HHHHHHHHhcCCCCchhhHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHH
Q 016027 199 SGMMERFLVCEPGPTMVTYTSLVKGYCK----AGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRK 274 (396)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 274 (396)
.+.+++|.+. .+..+.+.|..++.+ .+.+.+|.-+|+++.+. .+|++.+.+-...++...|++++|..+++.
T Consensus 157 ~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~e 232 (299)
T KOG3081|consen 157 EKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEE 232 (299)
T ss_pred HHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHH
Confidence 8888888763 245566666666554 34577888888888775 466777888888888888888888888888
Q ss_pred HHHCCCCCChhhHHHHHHHHHhcCCHHH-HHHHHHHHHHc
Q 016027 275 MIESGYTPDRLTYHILLKILCKEDKLDL-AIQVSKEMKCR 313 (396)
Q Consensus 275 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~ 313 (396)
...+... ++.+...++.+....|...+ ..+.+.++...
T Consensus 233 aL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 233 ALDKDAK-DPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred HHhccCC-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 8777544 56666666655555565433 34555555544
No 121
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.92 E-value=4.2e-06 Score=76.48 Aligned_cols=362 Identities=8% Similarity=-0.028 Sum_probs=205.7
Q ss_pred hhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHH
Q 016027 5 LAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCK 84 (396)
Q Consensus 5 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 84 (396)
|...+++.+|+.-|+.+++. .|. +...|..++++|.+.|++..|++.|.++...+ |.+...-.......+.
T Consensus 572 yLea~n~h~aV~~fQsALR~--dPk--D~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr-----P~s~y~~fk~A~~ecd 642 (1238)
T KOG1127|consen 572 YLEAHNLHGAVCEFQSALRT--DPK--DYNLWLGLGEAYPESGRYSHALKVFTKASLLR-----PLSKYGRFKEAVMECD 642 (1238)
T ss_pred ccCccchhhHHHHHHHHhcC--Cch--hHHHHHHHHHHHHhcCceehHHHhhhhhHhcC-----cHhHHHHHHHHHHHHH
Confidence 55677888888888888874 455 46688888888888888888888888888875 5555555666667777
Q ss_pred cCChHHHHHHHHHHhhccCCC----CCChHHHHHHHHHHHhcCCh-------hHHHHHHHHHHhCCCCCChhHHHHHHHH
Q 016027 85 QGRVKAASEYFHKRKELDQSW----APTVRVYNILLNGWFRSKNV-------KDAERFWLEMRKENVTPNVVTYGTLVEG 153 (396)
Q Consensus 85 ~~~~~~A~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 153 (396)
.|.+.+|+..+......-... .--..++..+...+...|=. +++++.|.-........+...|..+..+
T Consensus 643 ~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asda 722 (1238)
T KOG1127|consen 643 NGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDA 722 (1238)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHH
Confidence 888888888877765431110 01122222222222223322 3333333322222212233333333222
Q ss_pred HHccCCHH--H----HHHHH-HHHHHcCC--------------------CCCHHHHHHHHHHHHH----cC----CHHHH
Q 016027 154 YCRLRRVD--R----AIRLV-KEMRKEGI--------------------EPNAIVYNTVIDGLVE----AG----RFEEV 198 (396)
Q Consensus 154 ~~~~~~~~--~----a~~~~-~~~~~~~~--------------------~~~~~~~~~l~~~~~~----~~----~~~~a 198 (396)
|.-.-..+ . ...++ .+....+. ..+..+|..++..|.+ .| +...|
T Consensus 723 c~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~A 802 (1238)
T KOG1127|consen 723 CYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTA 802 (1238)
T ss_pred HHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHH
Confidence 21111000 0 00011 11111111 1123334444433333 22 23467
Q ss_pred HHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 016027 199 SGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIES 278 (396)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 278 (396)
+..+.+..+... .+..+|+.|.-. ...|++.-+...|-+-.... +....+|..+...+....+++.|...|......
T Consensus 803 i~c~KkaV~L~a-nn~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSL 879 (1238)
T KOG1127|consen 803 IRCCKKAVSLCA-NNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSL 879 (1238)
T ss_pred HHHHHHHHHHhh-ccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhhc
Confidence 777777776533 356667766544 66688888888887776654 336678888888889999999999999988776
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCChhhHHHHHHHHHhcCChhHHHHHH----------HH
Q 016027 279 GYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKC----RGCDIDLDTSTMLIHLLCRMYKFDEASAEF----------ED 344 (396)
Q Consensus 279 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~----------~~ 344 (396)
. +.+...|-.........|+.-++..+|..--. .|-.++..-|-.........|+.++-+... +.
T Consensus 880 d-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~ 958 (1238)
T KOG1127|consen 880 D-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSY 958 (1238)
T ss_pred C-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHH
Confidence 4 23555665555555667888888888776322 222344444444444445556555444333 33
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 016027 345 MIRRGLVPHYLTFKRLNDEFKKRGMTALAQKLCNVM 380 (396)
Q Consensus 345 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 380 (396)
... +.+.+...|........+.+.+..|.+...++
T Consensus 959 yf~-~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rl 993 (1238)
T KOG1127|consen 959 YFL-GHPQLCFAYAANGSTLEHLEEYRAALELATRL 993 (1238)
T ss_pred HHh-cCcchhHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 333 33445567777777777788888777776664
No 122
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.92 E-value=1.8e-07 Score=68.46 Aligned_cols=95 Identities=12% Similarity=-0.078 Sum_probs=66.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHH
Q 016027 75 FEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGY 154 (396)
Q Consensus 75 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 154 (396)
+..++..+...|++++|...|+.+...+|. +...|..+..++...|++++|...|+......+ .+...+..+..++
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~---~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p-~~~~a~~~lg~~l 102 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPW---SWRAHIALAGTWMMLKEYTTAINFYGHALMLDA-SHPEPVYQTGVCL 102 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHH
Confidence 445666677777777777777777765443 666777777777777777777777777776543 3666777777777
Q ss_pred HccCCHHHHHHHHHHHHHc
Q 016027 155 CRLRRVDRAIRLVKEMRKE 173 (396)
Q Consensus 155 ~~~~~~~~a~~~~~~~~~~ 173 (396)
...|++++|+..|+..++.
T Consensus 103 ~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 103 KMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 7777777777777777665
No 123
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.90 E-value=3.4e-06 Score=65.42 Aligned_cols=249 Identities=14% Similarity=0.043 Sum_probs=145.6
Q ss_pred HHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCC
Q 016027 80 DSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRR 159 (396)
Q Consensus 80 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 159 (396)
+-+.-.|++..++..-....... -+...-.-+.++|...|++.....-.. .. -.|....+..+......-++
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~~----~~~e~d~y~~raylAlg~~~~~~~eI~---~~-~~~~lqAvr~~a~~~~~e~~ 87 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSSK----TDVELDVYMYRAYLALGQYQIVISEIK---EG-KATPLQAVRLLAEYLELESN 87 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhcccc----chhHHHHHHHHHHHHcccccccccccc---cc-cCChHHHHHHHHHHhhCcch
Confidence 44555677777766665544321 233333445566666776655443322 21 13344444444444444444
Q ss_pred HHHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHH
Q 016027 160 VDRAI-RLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILK 238 (396)
Q Consensus 160 ~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 238 (396)
.+.-+ ++.+.+.......+......-...|...|++++|++..... .+......=...+.+..+++-|.+.++
T Consensus 88 ~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~------~~lE~~Al~VqI~lk~~r~d~A~~~lk 161 (299)
T KOG3081|consen 88 KKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG------ENLEAAALNVQILLKMHRFDLAEKELK 161 (299)
T ss_pred hHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc------chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44333 34444444433333333333445677788888888777762 133344444455667777888888888
Q ss_pred HHHHCCCCCChhhHHHHHHHHhc----cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 016027 239 MMISRGFLPSPTTYNYFFRYFSK----FGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRG 314 (396)
Q Consensus 239 ~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 314 (396)
+|.+.. +..+.+.|..++.+ .+....|.-+|+++-+. ..|++.+.+....++...|++++|..+++.+....
T Consensus 162 ~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd 237 (299)
T KOG3081|consen 162 KMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD 237 (299)
T ss_pred HHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 887642 55666666666543 34567777788887664 46777777777778888888888888888887765
Q ss_pred CCCChhhHHHHHHHHHhcCChhHH-HHHHHHHHH
Q 016027 315 CDIDLDTSTMLIHLLCRMYKFDEA-SAEFEDMIR 347 (396)
Q Consensus 315 ~~~~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~~ 347 (396)
.. ++.+...++.+-...|...++ .+.+.++..
T Consensus 238 ~~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 238 AK-DPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred CC-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 54 666666666655555655443 345555544
No 124
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.89 E-value=1.6e-05 Score=73.12 Aligned_cols=235 Identities=16% Similarity=0.158 Sum_probs=133.0
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHH
Q 016027 72 ASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLV 151 (396)
Q Consensus 72 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 151 (396)
+.+|..++.+-.+.|...+|++-|-++. |+..|..++....+.|.|++-.+.+....+..-.|... ..|+
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyikad--------Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi 1173 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKAD--------DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELI 1173 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhcC--------CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHH
Confidence 3566667777666777766666654432 44566666777777777777666666555554444433 3455
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChH
Q 016027 152 EGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLE 231 (396)
Q Consensus 152 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 231 (396)
-+|++.++..+..+++ .-|+......+.+-|...|.++.|.-+|... .-|..+...+...|++.
T Consensus 1174 ~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ 1237 (1666)
T KOG0985|consen 1174 FAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQ 1237 (1666)
T ss_pred HHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHH
Confidence 6666666665554433 1355555556666666666666665555432 24566666666777777
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016027 232 GASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMK 311 (396)
Q Consensus 232 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 311 (396)
.|.+.-++.. +..+|..+-.+|...+.+.-| +|...++.....-...++..|...|-+++.+.+++...
T Consensus 1238 ~AVD~aRKAn------s~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L 1306 (1666)
T KOG0985|consen 1238 GAVDAARKAN------STKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL 1306 (1666)
T ss_pred HHHHHhhhcc------chhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh
Confidence 6665544322 445666666666655544322 23333334444555667777777777777777766654
Q ss_pred HcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 016027 312 CRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDM 345 (396)
Q Consensus 312 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 345 (396)
... ......|+.|.-.|.+ -++++..+.++-.
T Consensus 1307 GLE-RAHMgmfTELaiLYsk-ykp~km~EHl~LF 1338 (1666)
T KOG0985|consen 1307 GLE-RAHMGMFTELAILYSK-YKPEKMMEHLKLF 1338 (1666)
T ss_pred chh-HHHHHHHHHHHHHHHh-cCHHHHHHHHHHH
Confidence 321 1234455555555554 2345554444433
No 125
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.88 E-value=2e-05 Score=72.46 Aligned_cols=303 Identities=14% Similarity=0.149 Sum_probs=173.5
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHH
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVY 112 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 112 (396)
++.......++...+-+.+-+++++++.-.+.. +..+....+.|+-...+. +..+..++.+++..-+ .|+
T Consensus 984 Pe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~--Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyD---a~~---- 1053 (1666)
T KOG0985|consen 984 PEEVSVTVKAFMTADLPNELIELLEKIVLDNSV--FSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APD---- 1053 (1666)
T ss_pred hHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcc--cccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCC---chh----
Confidence 446666778888888888888888888765432 344455555555555554 3456677777665431 222
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 016027 113 NILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEA 192 (396)
Q Consensus 113 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 192 (396)
+...+...+-+++|..+|++.- .+..+.+.|+.- -+..++|.++-++. ..+..|..+..+-.+.
T Consensus 1054 --ia~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie~---i~~ldRA~efAe~~------n~p~vWsqlakAQL~~ 1117 (1666)
T KOG0985|consen 1054 --IAEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIEN---IGSLDRAYEFAERC------NEPAVWSQLAKAQLQG 1117 (1666)
T ss_pred --HHHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHHH---hhhHHHHHHHHHhh------CChHHHHHHHHHHHhc
Confidence 3444556677788888887643 244555555543 34555555544433 2345666777777777
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHH
Q 016027 193 GRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLY 272 (396)
Q Consensus 193 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 272 (396)
|...+|++-|-+. .|+..|..++....+.|.|++-...+...++..-.|. .=+.++-+|.+.++..+.++++
T Consensus 1118 ~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~--id~eLi~AyAkt~rl~elE~fi 1189 (1666)
T KOG0985|consen 1118 GLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY--IDSELIFAYAKTNRLTELEEFI 1189 (1666)
T ss_pred CchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc--chHHHHHHHHHhchHHHHHHHh
Confidence 7777776665543 3455667777777777777777777666665543333 3345666666666665554443
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc--------------------CCCCChhhHHHHHHHHHhc
Q 016027 273 RKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCR--------------------GCDIDLDTSTMLIHLLCRM 332 (396)
Q Consensus 273 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------------------~~~~~~~~~~~l~~~~~~~ 332 (396)
. .|+......+..-|...+.++.|.-+|..+..- .-..+..+|..+-.+|...
T Consensus 1190 ~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~ 1262 (1666)
T KOG0985|consen 1190 A-------GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDK 1262 (1666)
T ss_pred c-------CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhch
Confidence 1 244444444444444444444444443322100 0001445555555555554
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHh
Q 016027 333 YKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFKKRGMTALAQKLCNVMS 381 (396)
Q Consensus 333 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 381 (396)
+.+.-| +|-..++.....-+..++.-|...|-+++-+.+++.-.
T Consensus 1263 ~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L 1306 (1666)
T KOG0985|consen 1263 EEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL 1306 (1666)
T ss_pred hhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh
Confidence 443322 22223344455567778888888888888888887643
No 126
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.88 E-value=6.6e-07 Score=75.31 Aligned_cols=125 Identities=10% Similarity=-0.004 Sum_probs=67.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-hhHHHHHHHH
Q 016027 75 FEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPN-VVTYGTLVEG 153 (396)
Q Consensus 75 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~ 153 (396)
..-....+...|++++|+..++.+....|+ |...+......+.+.++.++|.+.++++... .|+ ......+.++
T Consensus 309 ~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~---N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~a 383 (484)
T COG4783 309 QYGRALQTYLAGQYDEALKLLQPLIAAQPD---NPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQA 383 (484)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHH
Confidence 334444444555666666666665554332 4444455555556666666666666665554 223 3344455555
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 016027 154 YCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERF 205 (396)
Q Consensus 154 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 205 (396)
+.+.|++.+|+.+++...... +.|+..|..|..+|...|+..++.....+.
T Consensus 384 ll~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 384 LLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred HHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 666666666666665555542 445556666666666666655555554444
No 127
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.87 E-value=3.9e-06 Score=64.64 Aligned_cols=188 Identities=14% Similarity=0.068 Sum_probs=101.2
Q ss_pred cCchhHHHHHHHHhCCCC----CCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHH
Q 016027 9 KEFDSAWCLLLDKIGGHE----VPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCK 84 (396)
Q Consensus 9 g~~~~A~~~~~~~~~~~~----~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 84 (396)
.+.++.++++..++.... .++. ...+..++-+....|+.+.|..+++.+... +|.+..+-..-+..+-.
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~--w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-----fp~S~RV~~lkam~lEa 98 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEI--WTLYEQVFIAALDTGRDDLAQKCINQLRDR-----FPGSKRVGKLKAMLLEA 98 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchH--HHHHHHHHHHHHHhcchHHHHHHHHHHHHh-----CCCChhHHHHHHHHHHH
Confidence 345555555555543211 1220 123344555556666666666666666554 24444444444444555
Q ss_pred cCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHH
Q 016027 85 QGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAI 164 (396)
Q Consensus 85 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 164 (396)
.|++++|.++++...+.+|. |..++-.-+...-..|+--+|++-+.+..+. +..|...|.-+...|...|++++|.
T Consensus 99 ~~~~~~A~e~y~~lL~ddpt---~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~ 174 (289)
T KOG3060|consen 99 TGNYKEAIEYYESLLEDDPT---DTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAA 174 (289)
T ss_pred hhchhhHHHHHHHHhccCcc---hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHH
Confidence 56666666666666664432 4555554444445555555666665555544 3446666666666666666666666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhc
Q 016027 165 RLVKEMRKEGIEPNAIVYNTVIDGLVEAG---RFEEVSGMMERFLVC 208 (396)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~ 208 (396)
-.++++.-.. |.++..+..+...+.-.| +.+-+.++|.+.++.
T Consensus 175 fClEE~ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 175 FCLEELLLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 6666666552 334444555555544433 344456666666554
No 128
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.86 E-value=2.3e-07 Score=67.67 Aligned_cols=110 Identities=14% Similarity=0.051 Sum_probs=87.2
Q ss_pred HHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHH
Q 016027 17 LLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFH 96 (396)
Q Consensus 17 ~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 96 (396)
.+.+++.. .|+ +......++..+...|++++|.+.|+.+...+ |.++..+..++..+...|++++|..+++
T Consensus 5 ~~~~~l~~--~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~~la~~~~~~~~~~~A~~~~~ 75 (135)
T TIGR02552 5 TLKDLLGL--DSE--QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-----PYNSRYWLGLAACCQMLKEYEEAIDAYA 75 (135)
T ss_pred hHHHHHcC--Chh--hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-----CCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666663 343 24567788888888999999999998888764 7788888889999989999999999998
Q ss_pred HHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 016027 97 KRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKE 138 (396)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 138 (396)
.+...+| .+...+..+..++...|++++|...|+...+.
T Consensus 76 ~~~~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 76 LAAALDP---DDPRPYFHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8877543 36777778888888889999999998888775
No 129
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.85 E-value=7.9e-06 Score=62.99 Aligned_cols=188 Identities=15% Similarity=0.157 Sum_probs=115.1
Q ss_pred CChhHHHHHHHHHHhC---C-CCCChh-HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 016027 123 KNVKDAERFWLEMRKE---N-VTPNVV-TYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEE 197 (396)
Q Consensus 123 ~~~~~a~~~~~~~~~~---~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 197 (396)
.+.++..+++.+++.. | ..++.. .|..++-+....|+.+-|...++.+.+. ++-+..+-..-...+-..|.+++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchhh
Confidence 4556666666655432 2 333333 2344455555667777777777777665 23333333333344556677777
Q ss_pred HHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 016027 198 VSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIE 277 (396)
Q Consensus 198 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 277 (396)
|+++++.+++.++ .|..++---+...-..|+.-+|++-+....+. +..|...|..+...|...|++++|.-.++++.-
T Consensus 105 A~e~y~~lL~ddp-t~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 105 AIEYYESLLEDDP-TDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHHhccCc-chhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 7777777777654 35555655555556666666777777776665 455777777777777777777777777777766
Q ss_pred CCCCCChhhHHHHHHHHHhcC---CHHHHHHHHHHHHHcC
Q 016027 278 SGYTPDRLTYHILLKILCKED---KLDLAIQVSKEMKCRG 314 (396)
Q Consensus 278 ~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~ 314 (396)
.. +.++..+..+...+...| +.+.+.++|.+..+..
T Consensus 183 ~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 183 IQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred cC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 53 234555555555544443 4556777777777653
No 130
>PF12854 PPR_1: PPR repeat
Probab=98.83 E-value=6.8e-09 Score=54.23 Aligned_cols=32 Identities=31% Similarity=0.425 Sum_probs=21.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 016027 349 GLVPHYLTFKRLNDEFKKRGMTALAQKLCNVM 380 (396)
Q Consensus 349 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 380 (396)
|+.||..||+.++.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56666666666666666666666666666665
No 131
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.81 E-value=4.1e-07 Score=66.33 Aligned_cols=101 Identities=16% Similarity=0.070 Sum_probs=66.6
Q ss_pred CCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHH
Q 016027 69 DSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYG 148 (396)
Q Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 148 (396)
|.+......++..+...|++++|.+.|+.+...+|. +...+..+..++...|++++|...++.....+ +.+...+.
T Consensus 14 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~ 89 (135)
T TIGR02552 14 SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY---NSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYF 89 (135)
T ss_pred hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHH
Confidence 445555666667777777777777777776665433 56666677777777777777777777666553 23555666
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHc
Q 016027 149 TLVEGYCRLRRVDRAIRLVKEMRKE 173 (396)
Q Consensus 149 ~l~~~~~~~~~~~~a~~~~~~~~~~ 173 (396)
.+..++...|++++|.+.++...+.
T Consensus 90 ~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 90 HAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6666677777777777777666665
No 132
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.81 E-value=2e-05 Score=70.90 Aligned_cols=117 Identities=14% Similarity=0.129 Sum_probs=73.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHH
Q 016027 38 ILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLN 117 (396)
Q Consensus 38 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~ 117 (396)
..+....+.|-+++|..+|++..+. ..|-..|...|.|++|.++-+.-... .-..+|..-..
T Consensus 805 kvAvLAieLgMlEeA~~lYr~ckR~-------------DLlNKlyQs~g~w~eA~eiAE~~DRi-----HLr~Tyy~yA~ 866 (1416)
T KOG3617|consen 805 KVAVLAIELGMLEEALILYRQCKRY-------------DLLNKLYQSQGMWSEAFEIAETKDRI-----HLRNTYYNYAK 866 (1416)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHH-------------HHHHHHHHhcccHHHHHHHHhhccce-----ehhhhHHHHHH
Confidence 3455567889999999999988774 34556677788888888876553322 12345666666
Q ss_pred HHHhcCChhHHHHHHHHHH----------hCCC---------CCChhHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 016027 118 GWFRSKNVKDAERFWLEMR----------KENV---------TPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRK 172 (396)
Q Consensus 118 ~~~~~~~~~~a~~~~~~~~----------~~~~---------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 172 (396)
-+-..++.+.|++.|++.. ...+ ..|...|.-.....-..|+.+.|+.+|....+
T Consensus 867 ~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D 940 (1416)
T KOG3617|consen 867 YLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD 940 (1416)
T ss_pred HHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh
Confidence 6666778888888776532 1110 11333444444455556777777777766543
No 133
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.75 E-value=1.5e-06 Score=73.22 Aligned_cols=149 Identities=17% Similarity=0.085 Sum_probs=124.6
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHH
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVY 112 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 112 (396)
..+++..+..+...|++++|+..++.++.. .|.|+.........+.+.|+.++|.+.++++....|. ....+
T Consensus 306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~-----~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~---~~~l~ 377 (484)
T COG4783 306 LAAQYGRALQTYLAGQYDEALKLLQPLIAA-----QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPN---SPLLQ 377 (484)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC---ccHHH
Confidence 447888888889999999999999998886 4888888899999999999999999999999987654 36677
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 016027 113 NILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEA 192 (396)
Q Consensus 113 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 192 (396)
..+..++.+.|++.+|+.+++...... +-|+..|..|.++|...|+..++.....+.... .
T Consensus 378 ~~~a~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~------------------~ 438 (484)
T COG4783 378 LNLAQALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEGYAL------------------A 438 (484)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHHHHh------------------C
Confidence 888999999999999999999988774 448999999999999999999888877776554 3
Q ss_pred CCHHHHHHHHHHHHhc
Q 016027 193 GRFEEVSGMMERFLVC 208 (396)
Q Consensus 193 ~~~~~a~~~~~~~~~~ 208 (396)
|+++.|+..+....+.
T Consensus 439 G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 439 GRLEQAIIFLMRASQQ 454 (484)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 5666666666666554
No 134
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.73 E-value=0.00019 Score=65.44 Aligned_cols=229 Identities=12% Similarity=0.084 Sum_probs=152.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHH
Q 016027 40 IRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGW 119 (396)
Q Consensus 40 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 119 (396)
+--....+++.+|++-..++.+.. |....+-..=+-.+.+.|+.++|..+++......+. |..+...+-.+|
T Consensus 16 i~d~ld~~qfkkal~~~~kllkk~-----Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~---D~~tLq~l~~~y 87 (932)
T KOG2053|consen 16 IYDLLDSSQFKKALAKLGKLLKKH-----PNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT---DDLTLQFLQNVY 87 (932)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHC-----CCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC---chHHHHHHHHHH
Confidence 344567889999999999888862 443333333344456789999999888876654222 778888888889
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-----
Q 016027 120 FRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGR----- 194 (396)
Q Consensus 120 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----- 194 (396)
...++.++|..+|++..+. .|+......+..+|.+.+.+.+-.+.--++.+. .+.++..+-++++...+.-.
T Consensus 88 ~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~ 164 (932)
T KOG2053|consen 88 RDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENEL 164 (932)
T ss_pred HHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCccc
Confidence 9999999999999988875 466777778888888888776644444444332 34555666666666554321
Q ss_pred -----HHHHHHHHHHHHhcC-CCCchhhHHHHHHHHHhcCChHHHHHHH-HHHHHCCCCCChhhHHHHHHHHhccCCHHH
Q 016027 195 -----FEEVSGMMERFLVCE-PGPTMVTYTSLVKGYCKAGDLEGASKIL-KMMISRGFLPSPTTYNYFFRYFSKFGKVED 267 (396)
Q Consensus 195 -----~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 267 (396)
..-|.+.++.+.+.+ ..-+..-...-.......|++++|.+++ ....+.-...+...-+.-+..+...++|.+
T Consensus 165 ~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~ 244 (932)
T KOG2053|consen 165 LDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQE 244 (932)
T ss_pred ccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHH
Confidence 233556666666554 2222222333344556678889998888 344443334345555667778888889999
Q ss_pred HHHHHHHHHHCC
Q 016027 268 AMNLYRKMIESG 279 (396)
Q Consensus 268 a~~~~~~~~~~~ 279 (396)
..++-.++...+
T Consensus 245 l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 245 LFELSSRLLEKG 256 (932)
T ss_pred HHHHHHHHHHhC
Confidence 888888888875
No 135
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.72 E-value=8.4e-07 Score=63.07 Aligned_cols=104 Identities=13% Similarity=-0.027 Sum_probs=79.6
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHH
Q 016027 34 DTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYN 113 (396)
Q Consensus 34 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 113 (396)
.++..++..+.+.|++++|.+.|+.+....+ +.+....++..++.++.+.|++++|.+.|+.+....|+......++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 80 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYP--KSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALL 80 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC--CccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHH
Confidence 3678888888889999999999988887531 11222456777888888889999999999888876555444456677
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCC
Q 016027 114 ILLNGWFRSKNVKDAERFWLEMRKEN 139 (396)
Q Consensus 114 ~l~~~~~~~~~~~~a~~~~~~~~~~~ 139 (396)
.+..++.+.|++++|...++++.+..
T Consensus 81 ~~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 81 KLGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHHHC
Confidence 78888888888888888888888764
No 136
>PF12854 PPR_1: PPR repeat
Probab=98.70 E-value=2.7e-08 Score=51.93 Aligned_cols=30 Identities=53% Similarity=1.011 Sum_probs=12.1
Q ss_pred CCCChhHHHHHHHHHHccCCHHHHHHHHHH
Q 016027 140 VTPNVVTYGTLVEGYCRLRRVDRAIRLVKE 169 (396)
Q Consensus 140 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 169 (396)
+.||..+|++++.+|++.|++++|.+++++
T Consensus 3 ~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 3 CEPDVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CCCcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 334444444444444444444444444333
No 137
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.69 E-value=1.4e-06 Score=64.10 Aligned_cols=118 Identities=12% Similarity=0.086 Sum_probs=58.1
Q ss_pred cCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh--hHHHHHHHHHHccCCHHH
Q 016027 85 QGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNV--VTYGTLVEGYCRLRRVDR 162 (396)
Q Consensus 85 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~ 162 (396)
.++...+...++.+....++........-.+...+...|++++|...|+........|+. .....+...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 555555555555555543332222333334445555566666666666665554322221 123334555555666666
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 016027 163 AIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMER 204 (396)
Q Consensus 163 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 204 (396)
|+..++..... ......+.....++.+.|++++|...|+.
T Consensus 104 Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66655443222 22333444455556666666666655554
No 138
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.68 E-value=1.3e-05 Score=71.27 Aligned_cols=261 Identities=15% Similarity=0.147 Sum_probs=147.8
Q ss_pred hhhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHH
Q 016027 3 KVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSL 82 (396)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 82 (396)
.+|....++++|+.+- ++. ..|. -...-....+.+...|+-++|-++-. .+ . . -...++.|
T Consensus 565 gmy~~lhkwde~i~la-e~~---~~p~--~eklk~sy~q~l~dt~qd~ka~elk~----sd-----g---d-~laaiqly 625 (1636)
T KOG3616|consen 565 GMYQELHKWDEAIALA-EAK---GHPA--LEKLKRSYLQALMDTGQDEKAAELKE----SD-----G---D-GLAAIQLY 625 (1636)
T ss_pred HHHHHHHhHHHHHHHH-Hhc---CChH--HHHHHHHHHHHHHhcCchhhhhhhcc----cc-----C---c-cHHHHHHH
Confidence 4556666677776652 222 2443 12233456677777888887765422 10 1 1 23467888
Q ss_pred HHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHH
Q 016027 83 CKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDR 162 (396)
Q Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 162 (396)
.+.|.+..|.+.-..-.. ...|......+..++.+..-+++|-.+|+++... .-.+.+|.+..-+.+
T Consensus 626 ika~~p~~a~~~a~n~~~----l~~de~il~~ia~alik~elydkagdlfeki~d~---------dkale~fkkgdaf~k 692 (1636)
T KOG3616|consen 626 IKAGKPAKAARAALNDEE----LLADEEILEHIAAALIKGELYDKAGDLFEKIHDF---------DKALECFKKGDAFGK 692 (1636)
T ss_pred HHcCCchHHHHhhcCHHH----hhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCH---------HHHHHHHHcccHHHH
Confidence 899988887765433222 2235666666666666666666666666655321 112222222222333
Q ss_pred HHHHHHHH----------------HHcCCCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHH
Q 016027 163 AIRLVKEM----------------RKEGIEPN--------AIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYT 218 (396)
Q Consensus 163 a~~~~~~~----------------~~~~~~~~--------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 218 (396)
|+++-+-. ...| ..| .......+.+.....+|.+|+.+++.+..... -..-|.
T Consensus 693 aielarfafp~evv~lee~wg~hl~~~~-q~daainhfiea~~~~kaieaai~akew~kai~ildniqdqk~--~s~yy~ 769 (1636)
T KOG3616|consen 693 AIELARFAFPEEVVKLEEAWGDHLEQIG-QLDAAINHFIEANCLIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYG 769 (1636)
T ss_pred HHHHHHhhCcHHHhhHHHHHhHHHHHHH-hHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccch
Confidence 33222111 0000 001 01112234455567788888888888766432 344577
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 016027 219 SLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKED 298 (396)
Q Consensus 219 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 298 (396)
.+...|+..|+++.|.++|.+.- .++-.+.+|.+.|+|+.|.++-.+... .......|..-..-+-+.|
T Consensus 770 ~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~~~--~e~t~~~yiakaedldehg 838 (1636)
T KOG3616|consen 770 EIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEECHG--PEATISLYIAKAEDLDEHG 838 (1636)
T ss_pred HHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhc
Confidence 78888999999999988885532 355677889999999998888766543 2334445555555566677
Q ss_pred CHHHHHHHHHH
Q 016027 299 KLDLAIQVSKE 309 (396)
Q Consensus 299 ~~~~a~~~~~~ 309 (396)
++.+|.++|-.
T Consensus 839 kf~eaeqlyit 849 (1636)
T KOG3616|consen 839 KFAEAEQLYIT 849 (1636)
T ss_pred chhhhhheeEE
Confidence 77776665533
No 139
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.63 E-value=1e-06 Score=74.77 Aligned_cols=133 Identities=14% Similarity=0.096 Sum_probs=109.7
Q ss_pred CCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCC
Q 016027 27 VPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWA 106 (396)
Q Consensus 27 ~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 106 (396)
.|+.++......++..+...++++.|+.+|+++.+.. +.+...++..+...++-.+|.+++++.....|.
T Consensus 163 ~~t~~~NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--------pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-- 232 (395)
T PF09295_consen 163 VPTIVNNYLVDTLLKYLSLTQRYDEAIELLEKLRERD--------PEVAVLLARVYLLMNEEVEAIRLLNEALKENPQ-- 232 (395)
T ss_pred CCCCcchHHHHHHHHHHhhcccHHHHHHHHHHHHhcC--------CcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC--
Confidence 3555556667788888888999999999999988862 235667888888889999999999999875443
Q ss_pred CChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHH
Q 016027 107 PTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMR 171 (396)
Q Consensus 107 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 171 (396)
+......-...+.+.++++.|+.+.+++.+..+ -+..+|..|..+|...|+++.|+-.++.+.
T Consensus 233 -d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP-~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 233 -DSELLNLQAEFLLSKKKYELALEIAKKAVELSP-SEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 677788888889999999999999999988742 256699999999999999999999888775
No 140
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.63 E-value=4.5e-06 Score=71.03 Aligned_cols=128 Identities=20% Similarity=0.199 Sum_probs=107.6
Q ss_pred chhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHH
Q 016027 71 GASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTL 150 (396)
Q Consensus 71 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 150 (396)
+......|+..+...++++.|..+|+++.+.+ |+ ....++..+...++-.+|.+++.+.++... -+...+...
T Consensus 168 ~NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~----pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p-~d~~LL~~Q 240 (395)
T PF09295_consen 168 NNYLVDTLLKYLSLTQRYDEAIELLEKLRERD----PE--VAVLLARVYLLMNEEVEAIRLLNEALKENP-QDSELLNLQ 240 (395)
T ss_pred chHHHHHHHHHHhhcccHHHHHHHHHHHHhcC----Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-CCHHHHHHH
Confidence 44555667777778899999999999998863 33 455688888889999999999999997643 377788888
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 016027 151 VEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFL 206 (396)
Q Consensus 151 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 206 (396)
.+.+.+.++++.|+++.+++.+.. +.+-.+|..|..+|.+.|+++.|+..++.+-
T Consensus 241 a~fLl~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 241 AEFLLSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 899999999999999999999883 5566799999999999999999999998774
No 141
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.60 E-value=4.3e-06 Score=60.36 Aligned_cols=98 Identities=10% Similarity=-0.012 Sum_probs=82.5
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHH
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVY 112 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 112 (396)
.+.++.++..+.+.|++++|..+|+.+...+ |.+..-|..|+.++...|++++|+..|..+...+++ +...+
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-----p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d---dp~~~ 106 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYD-----AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID---APQAP 106 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC---CchHH
Confidence 5577788888888999999999999888876 777888888888888899999999999988887654 67788
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhC
Q 016027 113 NILLNGWFRSKNVKDAERFWLEMRKE 138 (396)
Q Consensus 113 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 138 (396)
..+..++...|+.+.|.+.|+..+..
T Consensus 107 ~~ag~c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 107 WAAAECYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88888888999999999888877765
No 142
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.59 E-value=0.0003 Score=60.56 Aligned_cols=151 Identities=11% Similarity=0.044 Sum_probs=119.2
Q ss_pred HHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHhccCCHHHHHHHHH
Q 016027 195 FEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLP-SPTTYNYFFRYFSKFGKVEDAMNLYR 273 (396)
Q Consensus 195 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~ 273 (396)
.+.....+++++......-..+|..+++...+..-.+.|..+|.++.+.+..+ +..+.++++..+| .++.+-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 55566667766654333345678889999999999999999999999987666 6777888888776 578899999999
Q ss_pred HHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 016027 274 KMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDID--LDTSTMLIHLLCRMYKFDEASAEFEDMIR 347 (396)
Q Consensus 274 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 347 (396)
.-++.- .-++.-....+..+...++-..+..+|+++...+..++ ...|..++.--..-|++..+.++-+++..
T Consensus 426 LGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 426 LGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 866652 22444556677888899999999999999998855444 47899999999999999999999888765
No 143
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.56 E-value=5.1e-06 Score=58.99 Aligned_cols=101 Identities=13% Similarity=0.029 Sum_probs=68.4
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC--CChhHHHHH
Q 016027 73 SLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVT--PNVVTYGTL 150 (396)
Q Consensus 73 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l 150 (396)
.++..++..+.+.|++++|.+.|..+....|+.......+..+..++.+.|+++.|...|+.+...... .....+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 356667777777788888888887777654443333455666777777778888888887777664222 123456666
Q ss_pred HHHHHccCCHHHHHHHHHHHHHc
Q 016027 151 VEGYCRLRRVDRAIRLVKEMRKE 173 (396)
Q Consensus 151 ~~~~~~~~~~~~a~~~~~~~~~~ 173 (396)
..++.+.|++++|.+.++++.+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHH
Confidence 67777777777777777777766
No 144
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=0.00011 Score=60.93 Aligned_cols=269 Identities=12% Similarity=0.026 Sum_probs=176.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHH
Q 016027 35 TFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNI 114 (396)
Q Consensus 35 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 114 (396)
........+....++.+|+..+..+++.. |.+...|..-+..+...|++++|.--.+...+..++.. ..+..
T Consensus 51 ~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~-----pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~---k~~~r 122 (486)
T KOG0550|consen 51 EAKEEGNAFYKQKTYGNALKNYTFAIDMC-----PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFS---KGQLR 122 (486)
T ss_pred HHHhhcchHHHHhhHHHHHHHHHHHHHhC-----ccchhhhchhHHHHHHHHhHhhcccchhhheecCCCcc---ccccc
Confidence 34456667778889999999999999985 77788888888889999999999888877766655532 12333
Q ss_pred HHHHHHhcCChhHHHHHHH---------------HHHhCC-CCCChhHHHHH-HHHHHccCCHHHHHHHHHHHHHcCCCC
Q 016027 115 LLNGWFRSKNVKDAERFWL---------------EMRKEN-VTPNVVTYGTL-VEGYCRLRRVDRAIRLVKEMRKEGIEP 177 (396)
Q Consensus 115 l~~~~~~~~~~~~a~~~~~---------------~~~~~~-~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~ 177 (396)
.-.++...++..+|.+.++ ...... -+|...++..+ ..++.-.|+.++|.+.--..++.. ..
T Consensus 123 ~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~~ 201 (486)
T KOG0550|consen 123 EGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-AT 201 (486)
T ss_pred hhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-cc
Confidence 3333333333333333332 111111 11333344433 345566788999888877777664 23
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc-h----------hhHHHHHHHHHhcCChHHHHHHHHHHHHCC--
Q 016027 178 NAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPT-M----------VTYTSLVKGYCKAGDLEGASKILKMMISRG-- 244 (396)
Q Consensus 178 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~----------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-- 244 (396)
+......-..++.-.++.+.+...|++.+..++.-. . ..+..-.+-..+.|++..|.+.+.+.+..+
T Consensus 202 n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~ 281 (486)
T KOG0550|consen 202 NAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPS 281 (486)
T ss_pred hhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcc
Confidence 333333333455667889999999999887654311 1 112222344567899999999999998753
Q ss_pred -CCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 016027 245 -FLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCR 313 (396)
Q Consensus 245 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 313 (396)
..|+...|........+.|+..+|+.--....+.+.. -...+..-..++...++|++|.+-++...+.
T Consensus 282 n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s-yikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 282 NKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS-YIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred ccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445566777777888999999999988887764311 1234444455677789999999999988765
No 145
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.55 E-value=0.00066 Score=62.11 Aligned_cols=109 Identities=17% Similarity=0.206 Sum_probs=76.7
Q ss_pred hhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHc
Q 016027 6 AKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQ 85 (396)
Q Consensus 6 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 85 (396)
...+++.+|++...+.++. .|+. ..+-..-+-.+.+.|+.++|..+++...... +.|..+...+-.+|...
T Consensus 20 ld~~qfkkal~~~~kllkk--~Pn~--~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~-----~~D~~tLq~l~~~y~d~ 90 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK--HPNA--LYAKVLKALSLFRLGKGDEALKLLEALYGLK-----GTDDLTLQFLQNVYRDL 90 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH--CCCc--HHHHHHHHHHHHHhcCchhHHHHHhhhccCC-----CCchHHHHHHHHHHHHH
Confidence 3567888888888888875 5652 2233333445678888888888887766653 55777888888888888
Q ss_pred CChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhH
Q 016027 86 GRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKD 127 (396)
Q Consensus 86 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 127 (396)
|+.++|..+|+++.... |+......+..+|.+.+++.+
T Consensus 91 ~~~d~~~~~Ye~~~~~~----P~eell~~lFmayvR~~~yk~ 128 (932)
T KOG2053|consen 91 GKLDEAVHLYERANQKY----PSEELLYHLFMAYVREKSYKK 128 (932)
T ss_pred hhhhHHHHHHHHHHhhC----CcHHHHHHHHHHHHHHHHHHH
Confidence 88888888888887663 445555666666777665544
No 146
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.54 E-value=1.1e-06 Score=63.41 Aligned_cols=90 Identities=16% Similarity=-0.044 Sum_probs=80.5
Q ss_pred hhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHH
Q 016027 4 VLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLC 83 (396)
Q Consensus 4 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 83 (396)
.+...|++++|..+|+-.... .|. +...|..|+-++-..|++++|+..|..+...+ |.++..+..++.++.
T Consensus 44 ~ly~~G~l~~A~~~f~~L~~~--Dp~--~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-----~ddp~~~~~ag~c~L 114 (157)
T PRK15363 44 QLMEVKEFAGAARLFQLLTIY--DAW--SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-----IDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHCCCHHHHHHHHHHHHHh--Ccc--cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-----CCCchHHHHHHHHHH
Confidence 456789999999999888763 555 46799999999999999999999999999986 889999999999999
Q ss_pred HcCChHHHHHHHHHHhhcc
Q 016027 84 KQGRVKAASEYFHKRKELD 102 (396)
Q Consensus 84 ~~~~~~~A~~~~~~~~~~~ 102 (396)
..|+.+.|.+.|+.+....
T Consensus 115 ~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HcCCHHHHHHHHHHHHHHh
Confidence 9999999999999988763
No 147
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.54 E-value=1.9e-07 Score=61.46 Aligned_cols=82 Identities=20% Similarity=0.189 Sum_probs=53.5
Q ss_pred ccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCC
Q 016027 8 AKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGR 87 (396)
Q Consensus 8 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 87 (396)
+|+++.|+..++++++..+. +. +...+..++.++.+.|++++|+.++++ .+.+ +.+......++.++.+.|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~-~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-----~~~~~~~~l~a~~~~~l~~ 73 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPT-NP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-----PSNPDIHYLLARCLLKLGK 73 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCG-TH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-----HCHHHHHHHHHHHHHHTT-
T ss_pred CccHHHHHHHHHHHHHHCCC-Ch-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-----CCCHHHHHHHHHHHHHhCC
Confidence 57778888888777774321 11 144566678888888888888888877 3332 3444556666777888888
Q ss_pred hHHHHHHHHH
Q 016027 88 VKAASEYFHK 97 (396)
Q Consensus 88 ~~~A~~~~~~ 97 (396)
+++|+++|++
T Consensus 74 y~eAi~~l~~ 83 (84)
T PF12895_consen 74 YEEAIKALEK 83 (84)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 8888877765
No 148
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.54 E-value=8.8e-06 Score=59.91 Aligned_cols=131 Identities=13% Similarity=-0.045 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHH
Q 016027 35 TFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNI 114 (396)
Q Consensus 35 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 114 (396)
.|..++..+ ..++...+...++.+....+ +.+........+...+...|++++|...|+.+....++..........
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~--~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYP--SSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLR 90 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCC--CChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 455555554 58899999888998888641 112224556667888999999999999999998863221111234556
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHH
Q 016027 115 LLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEM 170 (396)
Q Consensus 115 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 170 (396)
+...+...|++++|+..++..... ......+......+.+.|++++|...|+..
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 788899999999999999774332 234556778889999999999999999864
No 149
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.53 E-value=0.00017 Score=57.98 Aligned_cols=72 Identities=13% Similarity=0.024 Sum_probs=44.9
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCC
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWA 106 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 106 (396)
...+...+..+.+.|++++|++.|+.+....+. .+.-..+...++.++.+.+++++|...+++..+..|+.+
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~--s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~ 103 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPF--GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP 103 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCC
Confidence 445666666677777777777777777765311 111122234566777777777777777777777666543
No 150
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.52 E-value=2.8e-06 Score=72.49 Aligned_cols=91 Identities=18% Similarity=0.072 Sum_probs=60.8
Q ss_pred hhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHH
Q 016027 4 VLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLC 83 (396)
Q Consensus 4 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 83 (396)
.+...|++++|+..|.++++. .|+ +...|..++.++...|++++|+..++++.... |.+..+|..++.+|.
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~--~P~--~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-----P~~~~a~~~lg~~~~ 81 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDL--DPN--NAELYADRAQANIKLGNFTEAVADANKAIELD-----PSLAKAYLRKGTACM 81 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----cCCHHHHHHHHHHHH
Confidence 345567777777777777764 343 25566677777777777777777777776664 556666777777777
Q ss_pred HcCChHHHHHHHHHHhhccC
Q 016027 84 KQGRVKAASEYFHKRKELDQ 103 (396)
Q Consensus 84 ~~~~~~~A~~~~~~~~~~~~ 103 (396)
..|++++|+..|+++...+|
T Consensus 82 ~lg~~~eA~~~~~~al~l~P 101 (356)
T PLN03088 82 KLEEYQTAKAALEKGASLAP 101 (356)
T ss_pred HhCCHHHHHHHHHHHHHhCC
Confidence 77777777777777766543
No 151
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.51 E-value=3e-06 Score=57.38 Aligned_cols=96 Identities=22% Similarity=0.253 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHH
Q 016027 35 TFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNI 114 (396)
Q Consensus 35 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 114 (396)
++..++..+...|++++|+..++++.+.. |.+..++..++..+...|++++|.+.++......+. +..++..
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~ 73 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELD-----PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD---NAKAYYN 73 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcC-----CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc---chhHHHH
Confidence 46677778888888888888888887753 555567777888888888888888888887765332 4456777
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhC
Q 016027 115 LLNGWFRSKNVKDAERFWLEMRKE 138 (396)
Q Consensus 115 l~~~~~~~~~~~~a~~~~~~~~~~ 138 (396)
+...+...|++++|...+....+.
T Consensus 74 ~~~~~~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 74 LGLAYYKLGKYEEALEAYEKALEL 97 (100)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHcc
Confidence 777777888888888887776653
No 152
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.46 E-value=7.6e-06 Score=69.88 Aligned_cols=96 Identities=17% Similarity=0.055 Sum_probs=85.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHH
Q 016027 36 FVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNIL 115 (396)
Q Consensus 36 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 115 (396)
+...+..+...|++++|++.|++++... |.+..++..++.+|...|++++|+..++++...+|. +...|..+
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~-----P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~---~~~a~~~l 76 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLD-----PNNAELYADRAQANIKLGNFTEAVADANKAIELDPS---LAKAYLRK 76 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC---CHHHHHHH
Confidence 4556778889999999999999999985 788899999999999999999999999999988654 67789999
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCC
Q 016027 116 LNGWFRSKNVKDAERFWLEMRKEN 139 (396)
Q Consensus 116 ~~~~~~~~~~~~a~~~~~~~~~~~ 139 (396)
..++...|++++|+..|++.++..
T Consensus 77 g~~~~~lg~~~eA~~~~~~al~l~ 100 (356)
T PLN03088 77 GTACMKLEEYQTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC
Confidence 999999999999999999998864
No 153
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=1.7e-05 Score=63.29 Aligned_cols=115 Identities=17% Similarity=0.248 Sum_probs=79.8
Q ss_pred hhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcC---Ch
Q 016027 12 DSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQG---RV 88 (396)
Q Consensus 12 ~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~ 88 (396)
+....-++..+.. +|+ +...|..|+.+|..+|+++.|...|.++.+.. |+++..+..+..++..+. ..
T Consensus 139 ~~l~a~Le~~L~~--nP~--d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-----g~n~~~~~g~aeaL~~~a~~~~t 209 (287)
T COG4235 139 EALIARLETHLQQ--NPG--DAEGWDLLGRAYMALGRASDALLAYRNALRLA-----GDNPEILLGLAEALYYQAGQQMT 209 (287)
T ss_pred HHHHHHHHHHHHh--CCC--CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHhcCCccc
Confidence 3333444555543 344 46678888888888888888888888877775 777777777777766543 34
Q ss_pred HHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 016027 89 KAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKE 138 (396)
Q Consensus 89 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 138 (396)
.++..+|+++...++. |+.+...|...+...|++.+|...|+.|...
T Consensus 210 a~a~~ll~~al~~D~~---~iral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 210 AKARALLRQALALDPA---NIRALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHHHhcCCc---cHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 5677777777776654 6777777777777788888888888877776
No 154
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.42 E-value=1.9e-06 Score=54.26 Aligned_cols=65 Identities=32% Similarity=0.286 Sum_probs=58.4
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcC-ChHHHHHHHHHHhhcc
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQG-RVKAASEYFHKRKELD 102 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~ 102 (396)
..+|..++..+...|++++|+..|+++.+.+ |.++.++..++.++...| ++++|++.++++.+.+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-----p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-----PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-----TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 5689999999999999999999999999986 888899999999999999 7999999999988764
No 155
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.39 E-value=6.9e-06 Score=65.07 Aligned_cols=136 Identities=13% Similarity=0.100 Sum_probs=94.1
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHH
Q 016027 34 DTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYN 113 (396)
Q Consensus 34 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 113 (396)
..+..-+.-+.+.+++++|++.|.+++... |.++..|..-..+|.+.|.++.|++-.+.+...+|. ...+|.
T Consensus 82 E~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~-----P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~---yskay~ 153 (304)
T KOG0553|consen 82 ESLKNEGNKLMKNKDYQEAVDKYTEAIELD-----PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH---YSKAYG 153 (304)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-----CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH---HHHHHH
Confidence 355566777788888888888888888875 778888888888888888888888888888877554 566788
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHH-HccCCHH---HHHHHHHHHHHcCCCCCH
Q 016027 114 ILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGY-CRLRRVD---RAIRLVKEMRKEGIEPNA 179 (396)
Q Consensus 114 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~---~a~~~~~~~~~~~~~~~~ 179 (396)
.|..+|...|++++|++.|++.++. .|+..+|-.=+... .+.+... .+...++.....|..|+.
T Consensus 154 RLG~A~~~~gk~~~A~~aykKaLel--dP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig~~Pd~ 221 (304)
T KOG0553|consen 154 RLGLAYLALGKYEEAIEAYKKALEL--DPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIGAFPDS 221 (304)
T ss_pred HHHHHHHccCcHHHHHHHHHhhhcc--CCCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhccCCccc
Confidence 8888888888888888888887764 56666665444332 2233332 344444444444543544
No 156
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.39 E-value=1.2e-05 Score=60.89 Aligned_cols=117 Identities=15% Similarity=0.051 Sum_probs=75.6
Q ss_pred cCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCCh
Q 016027 9 KEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRV 88 (396)
Q Consensus 9 g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 88 (396)
.++..+...+..+++...... ....|..++..+...|++++|+..|+++..... +.+..+.++..++.++...|++
T Consensus 13 ~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~--~~~~~~~~~~~lg~~~~~~g~~ 88 (168)
T CHL00033 13 KTFTIVADILLRILPTTSGEK--EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEI--DPYDRSYILYNIGLIHTSNGEH 88 (168)
T ss_pred cccccchhhhhHhccCCchhH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc--cchhhHHHHHHHHHHHHHcCCH
Confidence 345666666666654332222 245778888888888888888888888876531 1112345788888888888888
Q ss_pred HHHHHHHHHHhhccCCCCCChHHHHHHHHHHH-------hcCChhHHHHHH
Q 016027 89 KAASEYFHKRKELDQSWAPTVRVYNILLNGWF-------RSKNVKDAERFW 132 (396)
Q Consensus 89 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~a~~~~ 132 (396)
++|+..++++...++. ....+..+...+. ..|+++.|+..+
T Consensus 89 ~eA~~~~~~Al~~~~~---~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~ 136 (168)
T CHL00033 89 TKALEYYFQALERNPF---LPQALNNMAVICHYRGEQAIEQGDSEIAEAWF 136 (168)
T ss_pred HHHHHHHHHHHHhCcC---cHHHHHHHHHHHHHhhHHHHHcccHHHHHHHH
Confidence 8888888888776433 3455666666665 455555444333
No 157
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.38 E-value=3.7e-05 Score=58.51 Aligned_cols=88 Identities=10% Similarity=0.005 Sum_probs=41.5
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHH
Q 016027 72 ASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLV 151 (396)
Q Consensus 72 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 151 (396)
...+..++..+...|++++|...|+++....+........+..+...+.+.|++++|...+++....... +...+..+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHH
Confidence 3344555555555555555555555554432221111234555555555555555555555555543211 333444444
Q ss_pred HHHHccCCH
Q 016027 152 EGYCRLRRV 160 (396)
Q Consensus 152 ~~~~~~~~~ 160 (396)
.++...|+.
T Consensus 114 ~~~~~~g~~ 122 (172)
T PRK02603 114 VIYHKRGEK 122 (172)
T ss_pred HHHHHcCCh
Confidence 444444443
No 158
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.38 E-value=3.7e-05 Score=58.48 Aligned_cols=97 Identities=13% Similarity=0.039 Sum_probs=76.3
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHH
Q 016027 32 SKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRV 111 (396)
Q Consensus 32 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 111 (396)
....+..++..+...|++++|+..|+++...... .+.....+..++.++.+.|++++|...++++....|. +...
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~ 108 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEED--PNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK---QPSA 108 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc--cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc---cHHH
Confidence 4567889999999999999999999999876321 1123568899999999999999999999999987544 5677
Q ss_pred HHHHHHHHHhcCChhHHHHHHH
Q 016027 112 YNILLNGWFRSKNVKDAERFWL 133 (396)
Q Consensus 112 ~~~l~~~~~~~~~~~~a~~~~~ 133 (396)
+..+...+...|+...+..-++
T Consensus 109 ~~~lg~~~~~~g~~~~a~~~~~ 130 (172)
T PRK02603 109 LNNIAVIYHKRGEKAEEAGDQD 130 (172)
T ss_pred HHHHHHHHHHcCChHhHhhCHH
Confidence 7788888888887655554433
No 159
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.35 E-value=1.4e-05 Score=63.39 Aligned_cols=107 Identities=18% Similarity=0.163 Sum_probs=90.9
Q ss_pred HHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHc
Q 016027 77 ILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCR 156 (396)
Q Consensus 77 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 156 (396)
.=+.-..+.+++++|+..|..+++.+|. |...|..-..+|.+.|.++.|++-.+..+..... ...+|..|..+|..
T Consensus 86 ~eGN~~m~~~~Y~eAv~kY~~AI~l~P~---nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~ 161 (304)
T KOG0553|consen 86 NEGNKLMKNKDYQEAVDKYTEAIELDPT---NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLA 161 (304)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhcCCC---cchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHc
Confidence 3456677899999999999999998765 8889999999999999999999999988876422 56799999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 016027 157 LRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGL 189 (396)
Q Consensus 157 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 189 (396)
.|++++|++.|++.++. .|+..+|..=+...
T Consensus 162 ~gk~~~A~~aykKaLel--dP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 162 LGKYEEAIEAYKKALEL--DPDNESYKSNLKIA 192 (304)
T ss_pred cCcHHHHHHHHHhhhcc--CCCcHHHHHHHHHH
Confidence 99999999999999876 67777776655544
No 160
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.35 E-value=2.7e-06 Score=55.90 Aligned_cols=82 Identities=22% Similarity=0.240 Sum_probs=52.9
Q ss_pred cCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCCh
Q 016027 46 AGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNV 125 (396)
Q Consensus 46 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 125 (396)
+|++++|+.+++++....+. .++...+..++.+|.+.|++++|..+++. ...++. +......+..++.+.|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~---~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~---~~~~~~l~a~~~~~l~~y 74 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPT---NPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS---NPDIHYLLARCLLKLGKY 74 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCG---THHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC---HHHHHHHHHHHHHHTT-H
T ss_pred CccHHHHHHHHHHHHHHCCC---ChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC---CHHHHHHHHHHHHHhCCH
Confidence 57778888888888776411 01455566678888888888888888877 333211 334445567777888888
Q ss_pred hHHHHHHHH
Q 016027 126 KDAERFWLE 134 (396)
Q Consensus 126 ~~a~~~~~~ 134 (396)
++|+++|++
T Consensus 75 ~eAi~~l~~ 83 (84)
T PF12895_consen 75 EEAIKALEK 83 (84)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 888877765
No 161
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.34 E-value=0.00012 Score=60.71 Aligned_cols=208 Identities=17% Similarity=0.143 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCC-CchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHH
Q 016027 35 TFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFD-SGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYN 113 (396)
Q Consensus 35 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 113 (396)
.|...+..|...|++++|.+.|.++.......+.+ .-...|...+.+|.+. ++++|.+.++++
T Consensus 37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A--------------- 100 (282)
T PF14938_consen 37 LYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKA--------------- 100 (282)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHH---------------
Confidence 45556666666777777777666665432111101 1111222222222222 444444433333
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHcc-CCHHHHHHHHHHHHHc----CCCC--CHHHHHHHH
Q 016027 114 ILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRL-RRVDRAIRLVKEMRKE----GIEP--NAIVYNTVI 186 (396)
Q Consensus 114 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~----~~~~--~~~~~~~l~ 186 (396)
+..|...|++..|-+++ ..+...|... |++++|++.|++..+. | .+ -...+..+.
T Consensus 101 --~~~y~~~G~~~~aA~~~---------------~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A 162 (282)
T PF14938_consen 101 --IEIYREAGRFSQAAKCL---------------KELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAA 162 (282)
T ss_dssp --HHHHHHCT-HHHHHHHH---------------HHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHH
T ss_pred --HHHHHhcCcHHHHHHHH---------------HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHH
Confidence 23344444444444333 3344455555 6777777777766542 2 11 123455666
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCC-----ch-hhHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCCC--hhhHHHHH
Q 016027 187 DGLVEAGRFEEVSGMMERFLVCEPGP-----TM-VTYTSLVKGYCKAGDLEGASKILKMMISRG--FLPS--PTTYNYFF 256 (396)
Q Consensus 187 ~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~--~~~~~~l~ 256 (396)
..+.+.|++++|.++|+++....... +. ..|...+-++...||+..|...++...... +..+ ......|+
T Consensus 163 ~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~ 242 (282)
T PF14938_consen 163 DLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLL 242 (282)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHH
Confidence 77777888888888887776542221 11 122333445666778888888887776542 1111 23445556
Q ss_pred HHHhc--cCCHHHHHHHHHHHH
Q 016027 257 RYFSK--FGKVEDAMNLYRKMI 276 (396)
Q Consensus 257 ~~~~~--~~~~~~a~~~~~~~~ 276 (396)
.++-. ...+..++.-|+.+.
T Consensus 243 ~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 243 EAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHhCCHHHHHHHHHHHcccC
Confidence 66532 233455555554443
No 162
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.34 E-value=0.00039 Score=55.84 Aligned_cols=179 Identities=13% Similarity=0.170 Sum_probs=95.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCchh--hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhc-
Q 016027 185 VIDGLVEAGRFEEVSGMMERFLVCEPGPTMV--TYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSK- 261 (396)
Q Consensus 185 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 261 (396)
....+...|++++|.+.|+.+....+..... ..-.++.++.+.+++++|...+++..+..+......+...+.+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~ 117 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNM 117 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhh
Confidence 3334455666666666666666543332111 1123445566666666666666666655332222222222222211
Q ss_pred -c---------------CC---HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhH
Q 016027 262 -F---------------GK---VEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTS 322 (396)
Q Consensus 262 -~---------------~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 322 (396)
. .+ ...|+..|+.+++. -|+ +.-..+|...+..+... -...-
T Consensus 118 ~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~-------------S~ya~~A~~rl~~l~~~----la~~e 178 (243)
T PRK10866 118 ALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPN-------------SQYTTDATKRLVFLKDR----LAKYE 178 (243)
T ss_pred hcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcC-------------ChhHHHHHHHHHHHHHH----HHHHH
Confidence 0 11 12344444444443 222 22234444433333321 01111
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhc
Q 016027 323 TMLIHLLCRMYKFDEASAEFEDMIRR--GLVPHYLTFKRLNDEFKKRGMTALAQKLCNVMSS 382 (396)
Q Consensus 323 ~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 382 (396)
-.+...|.+.|.+..|..-++.+++. +.+........++.+|...|..++|..+...+..
T Consensus 179 ~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 179 LSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 24566788889999999999998873 3334456677888899999999999888776543
No 163
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.32 E-value=0.001 Score=59.24 Aligned_cols=138 Identities=12% Similarity=0.150 Sum_probs=71.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHH
Q 016027 40 IRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGW 119 (396)
Q Consensus 40 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 119 (396)
+....+.|++-...++++.-.... +-..-..++..++..+.....|++|.++|..... ....+.++
T Consensus 767 ielr~klgDwfrV~qL~r~g~~d~---dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~-----------~e~~~ecl 832 (1189)
T KOG2041|consen 767 IELRKKLGDWFRVYQLIRNGGSDD---DDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD-----------TENQIECL 832 (1189)
T ss_pred HHHHHhhhhHHHHHHHHHccCCCc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----------hHhHHHHH
Confidence 344455555555555444211110 0011234556666666666666666666654321 12344555
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 016027 120 FRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVS 199 (396)
Q Consensus 120 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 199 (396)
.+..++++-+.+-..+ +-+....-.+..++...|.-++|.+.+-+ .+ .|. ..+..|...++|.+|.
T Consensus 833 y~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr---~s-~pk-----aAv~tCv~LnQW~~av 898 (1189)
T KOG2041|consen 833 YRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLR---RS-LPK-----AAVHTCVELNQWGEAV 898 (1189)
T ss_pred HHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHh---cc-CcH-----HHHHHHHHHHHHHHHH
Confidence 5555555554444333 23555666677777777777777666532 22 221 3345566667777777
Q ss_pred HHHHHH
Q 016027 200 GMMERF 205 (396)
Q Consensus 200 ~~~~~~ 205 (396)
++-++.
T Consensus 899 elaq~~ 904 (1189)
T KOG2041|consen 899 ELAQRF 904 (1189)
T ss_pred HHHHhc
Confidence 665554
No 164
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.31 E-value=5.2e-06 Score=51.47 Aligned_cols=61 Identities=31% Similarity=0.385 Sum_probs=50.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccC
Q 016027 38 ILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQ 103 (396)
Q Consensus 38 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 103 (396)
.++..+.+.|++++|+..|+++.+.. |.++.++..++.++...|++++|..+|+++.+.+|
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~-----P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQD-----PDNPEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCS-----TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 46777888899999999999888874 77888888888888889999999988888877654
No 165
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.30 E-value=2.7e-05 Score=66.68 Aligned_cols=117 Identities=13% Similarity=0.018 Sum_probs=60.5
Q ss_pred ChhhHHHHHHHHhccCCHHHHHHHHHHHHHC--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 016027 248 SPTTYNYFFRYFSKFGKVEDAMNLYRKMIES--GYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTML 325 (396)
Q Consensus 248 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 325 (396)
+......++..+....+.+.+..++.+.+.. ....-+.|..++++.|...|..+.++.+++.=...|+-||..+++.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 4444455555555555555555555555443 11122334445555555555555555555555555555555555555
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 016027 326 IHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEF 364 (396)
Q Consensus 326 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 364 (396)
++.+.+.|++..|.++...|...+...+..|+...+.+|
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~ 183 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSC 183 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHH
Confidence 555555555555555555555444444444444333333
No 166
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.29 E-value=7.2e-05 Score=52.19 Aligned_cols=101 Identities=17% Similarity=0.059 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHH
Q 016027 35 TFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNI 114 (396)
Q Consensus 35 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 114 (396)
++..++.++-..|+.++|+.+|+++...+... +.....+..+...+...|++++|..+++......|+..-+......
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~--~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f 80 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSG--ADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVF 80 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc--hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHH
Confidence 45566667777777777777777777653211 2223456667777777777777777777766543322222233333
Q ss_pred HHHHHHhcCChhHHHHHHHHHHh
Q 016027 115 LLNGWFRSKNVKDAERFWLEMRK 137 (396)
Q Consensus 115 l~~~~~~~~~~~~a~~~~~~~~~ 137 (396)
+..++...|+.++|++.+-....
T Consensus 81 ~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 81 LALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 34455666777777776655443
No 167
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=0.0011 Score=55.28 Aligned_cols=264 Identities=14% Similarity=0.043 Sum_probs=173.7
Q ss_pred hhhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHH
Q 016027 3 KVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSL 82 (396)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 82 (396)
+.+.+..+|..|+..+..+++. -|+ +...|..-+..+...|++++|.--.+...+.. +..+..+.....++
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~--~pd--~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-----d~~~k~~~r~~~c~ 127 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDM--CPD--NASYYSNRAATLMMLGRFEEALGDARQSVRLK-----DGFSKGQLREGQCH 127 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHh--Ccc--chhhhchhHHHHHHHHhHhhcccchhhheecC-----CCccccccchhhhh
Confidence 3466778899999999999985 455 35577788888889999999887777666654 33333444455555
Q ss_pred HHcCChHHHHHHHHHHh------------hccCC--CCCChHHHHHH-HHHHHhcCChhHHHHHHHHHHhCCCCCChhHH
Q 016027 83 CKQGRVKAASEYFHKRK------------ELDQS--WAPTVRVYNIL-LNGWFRSKNVKDAERFWLEMRKENVTPNVVTY 147 (396)
Q Consensus 83 ~~~~~~~~A~~~~~~~~------------~~~~~--~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 147 (396)
...++..+|.+.++... ..-+. -+|.-..|..+ ..++.-.+++++|..+--..++.... +....
T Consensus 128 ~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~-n~~al 206 (486)
T KOG0550|consen 128 LALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDAT-NAEAL 206 (486)
T ss_pred hhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccc-hhHHH
Confidence 55555555554444211 11111 12333444433 24566689999999887777765322 33333
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHH-------------HHHHHHHHHHcCCHHHHHHHHHHHHhcCC---C
Q 016027 148 GTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIV-------------YNTVIDGLVEAGRFEEVSGMMERFLVCEP---G 211 (396)
Q Consensus 148 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~ 211 (396)
..-..++.-.++.+.+...|++.+..+ |+... +..-.+-..+.|.+..|.+.|.+.+...+ .
T Consensus 207 ~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~ 284 (486)
T KOG0550|consen 207 YVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKK 284 (486)
T ss_pred HhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccc
Confidence 333344556678899999998887763 33322 12223345678999999999999988654 3
Q ss_pred CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 016027 212 PTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESG 279 (396)
Q Consensus 212 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 279 (396)
++...|.....+..+.|+.++|+.--+...+.+.. -...+..-..++.-.++|++|.+-|+...+..
T Consensus 285 ~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s-yikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 285 TNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS-YIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred hhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 55667777788888999999999998888875311 12234444456677889999999999987763
No 168
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.29 E-value=2.9e-05 Score=58.84 Aligned_cols=84 Identities=8% Similarity=-0.088 Sum_probs=57.3
Q ss_pred chhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHH
Q 016027 71 GASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTL 150 (396)
Q Consensus 71 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 150 (396)
....+..++..+...|++++|+..|+++....++......++..+...+...|++++|+..++...... +....++..+
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~l 112 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHH
Confidence 355567777888888888888888888876543322234577788888888888888888888877653 2234455555
Q ss_pred HHHHH
Q 016027 151 VEGYC 155 (396)
Q Consensus 151 ~~~~~ 155 (396)
...+.
T Consensus 113 a~i~~ 117 (168)
T CHL00033 113 AVICH 117 (168)
T ss_pred HHHHH
Confidence 55555
No 169
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.28 E-value=3.3e-05 Score=53.86 Aligned_cols=109 Identities=17% Similarity=0.039 Sum_probs=81.3
Q ss_pred hhhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHH
Q 016027 3 KVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSL 82 (396)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 82 (396)
.++-..|+.++|+.+|++.+..+.... ....++..++..+...|++++|+.+|+......+. -+.+..+...+..++
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~-~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~--~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGA-DRRRALIQLASTLRNLGRYDEALALLEEALEEFPD--DELNAALRVFLALAL 85 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCch-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC--ccccHHHHHHHHHHH
Confidence 456678999999999999999765433 12568889999999999999999999999875311 122555566667788
Q ss_pred HHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHH
Q 016027 83 CKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWF 120 (396)
Q Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 120 (396)
...|+.++|++++-..... +...|..-|..|.
T Consensus 86 ~~~gr~~eAl~~~l~~la~------~~~~y~ra~~~ya 117 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEALAE------TLPRYRRAIRFYA 117 (120)
T ss_pred HHCCCHHHHHHHHHHHHHH------HHHHHHHHHHHHH
Confidence 8999999999999776542 4445555555554
No 170
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.25 E-value=2.6e-05 Score=52.58 Aligned_cols=93 Identities=16% Similarity=0.112 Sum_probs=54.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 016027 288 HILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFKKR 367 (396)
Q Consensus 288 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 367 (396)
..+...+...|++++|...++++.+.... +...+..+...+...|++++|.+.++...+.. +.+..++..+...+...
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHH
Confidence 34455555566666666666666554322 33555556666666666666666666665543 22334555666666666
Q ss_pred CCchHHHHHHHHHhc
Q 016027 368 GMTALAQKLCNVMSS 382 (396)
Q Consensus 368 g~~~~A~~~~~~~~~ 382 (396)
|++++|...+++..+
T Consensus 82 ~~~~~a~~~~~~~~~ 96 (100)
T cd00189 82 GKYEEALEAYEKALE 96 (100)
T ss_pred HhHHHHHHHHHHHHc
Confidence 666666666666544
No 171
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.24 E-value=0.0013 Score=51.53 Aligned_cols=180 Identities=16% Similarity=0.110 Sum_probs=100.0
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHH
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVY 112 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 112 (396)
...+...+..+.+.|++.+|+..|+.+...-+ +.+-.+.+...++.++.+.|+++.|...++......|..+--..++
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P--~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~ 82 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYP--NSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYAL 82 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-T--TSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC--CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHH
Confidence 55788888899999999999999999988643 3355567778889999999999999999999888766643322333
Q ss_pred HHHHHHHHhc-----------CChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHH
Q 016027 113 NILLNGWFRS-----------KNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIV 181 (396)
Q Consensus 113 ~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 181 (396)
-.++.++... +...+|...|+ .++.-|=...-..+|...+..+.+. =...
T Consensus 83 Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~---------------~li~~yP~S~y~~~A~~~l~~l~~~----la~~ 143 (203)
T PF13525_consen 83 YMLGLSYYKQIPGILRSDRDQTSTRKAIEEFE---------------ELIKRYPNSEYAEEAKKRLAELRNR----LAEH 143 (203)
T ss_dssp HHHHHHHHHHHHHHH-TT---HHHHHHHHHHH---------------HHHHH-TTSTTHHHHHHHHHHHHHH----HHHH
T ss_pred HHHHHHHHHhCccchhcccChHHHHHHHHHHH---------------HHHHHCcCchHHHHHHHHHHHHHHH----HHHH
Confidence 3333322221 01122333333 3333333333444444444433322 0111
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--chhhHHHHHHHHHhcCChHHH
Q 016027 182 YNTVIDGLVEAGRFEEVSGMMERFLVCEPGP--TMVTYTSLVKGYCKAGDLEGA 233 (396)
Q Consensus 182 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a 233 (396)
--.+...|.+.|.+..|..-++.+++.-+.. .......++.+|.+.|..+.+
T Consensus 144 e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 144 ELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 1234455667777777777777766653321 123445556666666665533
No 172
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.23 E-value=2.5e-06 Score=45.28 Aligned_cols=33 Identities=27% Similarity=0.601 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 016027 111 VYNILLNGWFRSKNVKDAERFWLEMRKENVTPN 143 (396)
Q Consensus 111 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 143 (396)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 466666666666666666666666666666665
No 173
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.22 E-value=2.8e-06 Score=45.04 Aligned_cols=33 Identities=36% Similarity=0.639 Sum_probs=25.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 016027 321 TSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPH 353 (396)
Q Consensus 321 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~ 353 (396)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 577777777777777777777777777777776
No 174
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.21 E-value=4.4e-05 Score=65.42 Aligned_cols=119 Identities=17% Similarity=0.213 Sum_probs=65.4
Q ss_pred ChHHHHHHHHHHHhcCChhHHHHHHHHHHhC--CCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 016027 108 TVRVYNILLNGWFRSKNVKDAERFWLEMRKE--NVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTV 185 (396)
Q Consensus 108 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 185 (396)
+......+++.+....+.+.+..++.+.... ....-..|..++++.|.+.|..++++.+++.=...|+-||..+++.+
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 4444555555555555566666665555543 11112234446666666666666666666666666666666666666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHh
Q 016027 186 IDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCK 226 (396)
Q Consensus 186 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 226 (396)
+..+.+.|++..|.++...|...+...+..++...+.+|.+
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 66666666666666666655554444444444444444443
No 175
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.21 E-value=3.2e-06 Score=44.48 Aligned_cols=32 Identities=28% Similarity=0.494 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 016027 111 VYNILLNGWFRSKNVKDAERFWLEMRKENVTP 142 (396)
Q Consensus 111 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 142 (396)
+|+.++.+|.+.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555544
No 176
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.19 E-value=0.00013 Score=60.12 Aligned_cols=130 Identities=11% Similarity=0.087 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHH-cCChHHHHHHHHHHhhccCCCCCChHHHH
Q 016027 35 TFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCK-QGRVKAASEYFHKRKELDQSWAPTVRVYN 113 (396)
Q Consensus 35 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 113 (396)
+|..+++...+.+..+.|..+|.++.+.. +.+..+|...+..-.. .++.+.|.++|+...+.- ..+...|.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-----~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f---~~~~~~~~ 74 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-----RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF---PSDPDFWL 74 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH---TT-HHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC---CCCHHHHH
Confidence 57777788888888888888888887542 3455666666666344 456666888888877643 34677777
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCh---hHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 016027 114 ILLNGWFRSKNVKDAERFWLEMRKENVTPNV---VTYGTLVEGYCRLRRVDRAIRLVKEMRKE 173 (396)
Q Consensus 114 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 173 (396)
..+..+.+.++.+.|..+|++.... +.++. ..|...++.=.+.|+.+.+.++.+++.+.
T Consensus 75 ~Y~~~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 75 EYLDFLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7888888888888888888887765 22222 36777777777777777777777777665
No 177
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.17 E-value=0.00022 Score=59.13 Aligned_cols=146 Identities=13% Similarity=0.117 Sum_probs=77.9
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhc----CC-CCchhhHHHHHHHH
Q 016027 151 VEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEA-GRFEEVSGMMERFLVC----EP-GPTMVTYTSLVKGY 224 (396)
Q Consensus 151 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~ 224 (396)
+..|...|++..|-+.+.. +...|... |++++|++.|++..+. +. ..-...+..+...+
T Consensus 101 ~~~y~~~G~~~~aA~~~~~---------------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~ 165 (282)
T PF14938_consen 101 IEIYREAGRFSQAAKCLKE---------------LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLY 165 (282)
T ss_dssp HHHHHHCT-HHHHHHHHHH---------------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHH---------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHH
Confidence 3445556666655554444 34445556 7888888888877653 11 01134556677788
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCC-----hh-hHHHHHHHHhccCCHHHHHHHHHHHHHCCC--CCC--hhhHHHHHHHH
Q 016027 225 CKAGDLEGASKILKMMISRGFLPS-----PT-TYNYFFRYFSKFGKVEDAMNLYRKMIESGY--TPD--RLTYHILLKIL 294 (396)
Q Consensus 225 ~~~~~~~~a~~~~~~~~~~~~~~~-----~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~--~~~~~~l~~~~ 294 (396)
.+.|++++|.++|+++.......+ .. .+...+-++...|++..|...+++.....+ ..+ ......|+.++
T Consensus 166 ~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~ 245 (282)
T PF14938_consen 166 ARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAY 245 (282)
T ss_dssp HHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH
Confidence 888888888888888876532211 11 222233355566788888888887765432 111 23344555554
Q ss_pred Hh--cCCHHHHHHHHHHHH
Q 016027 295 CK--EDKLDLAIQVSKEMK 311 (396)
Q Consensus 295 ~~--~~~~~~a~~~~~~~~ 311 (396)
-. ...+..++.-|+.+.
T Consensus 246 ~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 246 EEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HTT-CCCHHHHCHHHTTSS
T ss_pred HhCCHHHHHHHHHHHcccC
Confidence 43 123444444444443
No 178
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.15 E-value=4.7e-06 Score=43.83 Aligned_cols=33 Identities=24% Similarity=0.340 Sum_probs=21.8
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 016027 320 DTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVP 352 (396)
Q Consensus 320 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p 352 (396)
.+|+.++.+|++.|+++.|..+|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 356666666666666666666666666666655
No 179
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.14 E-value=7.6e-06 Score=51.28 Aligned_cols=52 Identities=23% Similarity=0.282 Sum_probs=27.5
Q ss_pred hccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 016027 7 KAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNL 62 (396)
Q Consensus 7 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 62 (396)
+.|++++|+..|.+++.. .|+ +..++..++.++.+.|++++|.++++++...
T Consensus 3 ~~~~~~~A~~~~~~~l~~--~p~--~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR--NPD--NPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH--TTT--SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHH--CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 445555555555555543 333 2445555555555555555555555555554
No 180
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.14 E-value=7.7e-06 Score=50.69 Aligned_cols=58 Identities=22% Similarity=0.328 Sum_probs=50.7
Q ss_pred hhhhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcc
Q 016027 2 IKVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLD 63 (396)
Q Consensus 2 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 63 (396)
...+.+.|++++|+..|+++++. .|+ +..++..++.++...|++++|+..|+++.+..
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~--~P~--~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQ--DPD--NPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCC--STT--HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH--CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 35688999999999999999996 455 47899999999999999999999999998874
No 181
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.12 E-value=9.6e-05 Score=49.58 Aligned_cols=79 Identities=14% Similarity=0.383 Sum_probs=58.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCC-CCChhHHHHHHHHHHccC--------CHHHHHHHHHHHHHcCCCCCHHHHH
Q 016027 113 NILLNGWFRSKNVKDAERFWLEMRKENV-TPNVVTYGTLVEGYCRLR--------RVDRAIRLVKEMRKEGIEPNAIVYN 183 (396)
Q Consensus 113 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~ 183 (396)
...+..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. +.-+.+.+|+.|+..+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3445556666888888888888888888 788888888888776553 2345677788888888888888888
Q ss_pred HHHHHHHH
Q 016027 184 TVIDGLVE 191 (396)
Q Consensus 184 ~l~~~~~~ 191 (396)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 88776654
No 182
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.12 E-value=1.7e-05 Score=49.70 Aligned_cols=54 Identities=22% Similarity=0.206 Sum_probs=43.6
Q ss_pred HHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhcc
Q 016027 44 ARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELD 102 (396)
Q Consensus 44 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 102 (396)
...|++++|++.|+++.... |.+..+...++.+|.+.|++++|.++++++...+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-----p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-----PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-----TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred hhccCHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 56788888888888888874 7788888888888888888888888888887763
No 183
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.12 E-value=0.0004 Score=62.19 Aligned_cols=135 Identities=6% Similarity=-0.073 Sum_probs=66.5
Q ss_pred CCchhHHHHHHHHHHHcC-----ChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcC--------ChhHHHHHHHHH
Q 016027 69 DSGASLFEILLDSLCKQG-----RVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSK--------NVKDAERFWLEM 135 (396)
Q Consensus 69 ~~~~~~~~~l~~~~~~~~-----~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~ 135 (396)
|.+..+|...+++..... +...|..+|+++.+.+|+ ....|..+..++.... +...+.+...+.
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~---~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD---FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 666677777666644322 256777778887777655 3444544433332211 112222222222
Q ss_pred HhC-CCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 016027 136 RKE-NVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVC 208 (396)
Q Consensus 136 ~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 208 (396)
... ....+...+..+.-.....|++++|...+++..+.. |+...|..+...+...|+.++|...+++....
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 221 112233444444444444555555555555555542 34455555555555555555555555555543
No 184
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.10 E-value=4.5e-05 Score=63.25 Aligned_cols=272 Identities=12% Similarity=0.043 Sum_probs=168.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhcc--CCC-CCChHHHHHHH
Q 016027 40 IRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELD--QSW-APTVRVYNILL 116 (396)
Q Consensus 40 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~-~~~~~~~~~l~ 116 (396)
+.-+++.|+....+.+|+.+.+.+.. ++..-..+|..|+.+|.-.+++++|+++...=.... -+. .-...+-..|.
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLG 102 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLG 102 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccccccc
Confidence 45688999999999999999987532 233445678888889999999999998765321110 010 01223344455
Q ss_pred HHHHhcCChhHHHHHHHHH----HhCCCC-CChhHHHHHHHHHHccCC--------------------HHHHHHHHHHHH
Q 016027 117 NGWFRSKNVKDAERFWLEM----RKENVT-PNVVTYGTLVEGYCRLRR--------------------VDRAIRLVKEMR 171 (396)
Q Consensus 117 ~~~~~~~~~~~a~~~~~~~----~~~~~~-~~~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~~~ 171 (396)
..+--.|.|++|+....+- .+.|-+ ....++..+...|...|+ ++.|.++|.+=+
T Consensus 103 NtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL 182 (639)
T KOG1130|consen 103 NTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENL 182 (639)
T ss_pred chhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHH
Confidence 6666678888877654332 222211 134456667777766553 234444444322
Q ss_pred Hc----CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCC-CchhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 016027 172 KE----GI-EPNAIVYNTVIDGLVEAGRFEEVSGMMERFLV----CEPG-PTMVTYTSLVKGYCKAGDLEGASKILKMMI 241 (396)
Q Consensus 172 ~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 241 (396)
+. |- -..-..|..+.+.|.-.|+++.|+...+.-+. .|-. .....+..+.+++.-.|+++.|.+.++...
T Consensus 183 ~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl 262 (639)
T KOG1130|consen 183 ELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTL 262 (639)
T ss_pred HHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHH
Confidence 21 10 01123456666677778899999877654332 1211 234577888899999999999999887654
Q ss_pred HC----CC-CCChhhHHHHHHHHhccCCHHHHHHHHHHHHH----C-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016027 242 SR----GF-LPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIE----S-GYTPDRLTYHILLKILCKEDKLDLAIQVSKEMK 311 (396)
Q Consensus 242 ~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 311 (396)
.. |- .........|...|.-...+++|+.++.+-.. . +..-....+.+|..+|...|..++|+.+.+..+
T Consensus 263 ~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 263 NLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 32 21 12334556677777777888899888765332 1 112245677788899999999999888776654
Q ss_pred H
Q 016027 312 C 312 (396)
Q Consensus 312 ~ 312 (396)
+
T Consensus 343 ~ 343 (639)
T KOG1130|consen 343 R 343 (639)
T ss_pred H
Confidence 4
No 185
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.10 E-value=0.00047 Score=61.80 Aligned_cols=135 Identities=11% Similarity=-0.059 Sum_probs=101.1
Q ss_pred ChhHHHHHHHHHHH--cC---CHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcC--------ChHHHHHHHHHH
Q 016027 32 SKDTFVILIRRYAR--AG---MVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQG--------RVKAASEYFHKR 98 (396)
Q Consensus 32 ~~~~~~~l~~~~~~--~g---~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~A~~~~~~~ 98 (396)
+..+|...+++... .+ ...+|+++|+++.+.+ |....++..+..++.... ++..+.+...+.
T Consensus 336 ~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-----P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 336 QGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-----PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred CHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-----CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 36678877776444 33 3779999999999986 777777777666654432 233445555554
Q ss_pred hhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 016027 99 KELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEG 174 (396)
Q Consensus 99 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 174 (396)
... +....+...|..+.......|++++|...+++....+ |+...|..+...+...|+.++|...+++....+
T Consensus 411 ~al-~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 411 VAL-PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred hhc-ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 432 1223355778888777778899999999999999875 688899999999999999999999999998773
No 186
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.09 E-value=0.0024 Score=50.08 Aligned_cols=132 Identities=14% Similarity=0.082 Sum_probs=79.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHH-----HH
Q 016027 111 VYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYN-----TV 185 (396)
Q Consensus 111 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~l 185 (396)
+.+.++.++.-.+.+.-....+.+.++...+.++.....|++.-...|+.+.|..++++..+..-..+..+++ ..
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 4555666666677777777777777776655666677777777777777777777777665432222222222 22
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 016027 186 IDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISR 243 (396)
Q Consensus 186 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 243 (396)
...+.-.+++..|...+.++...+.. ++...|.-.-+..-.|+..+|++.++.+...
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 23344455666666666666654432 4444444444444456677777777777665
No 187
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.09 E-value=0.0012 Score=51.72 Aligned_cols=67 Identities=13% Similarity=0.073 Sum_probs=48.2
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 016027 72 ASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKE 138 (396)
Q Consensus 72 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 138 (396)
+..+...+..+...|++.+|.+.|+.+....|+.+-.......++.++.+.|+++.|...++.+++.
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3445566777778888888888888888776665445566677788888888888888888887765
No 188
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.09 E-value=0.00014 Score=58.84 Aligned_cols=103 Identities=11% Similarity=-0.082 Sum_probs=71.9
Q ss_pred hHHHHHHHH-HHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHH
Q 016027 34 DTFVILIRR-YARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVY 112 (396)
Q Consensus 34 ~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 112 (396)
..++..+.. ..+.|++++|+..|+.+.+..+. .+-.+.++..++..|...|++++|...|+.+....|+.+.....+
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~--s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPD--STYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 334444443 35678888888888888876311 111245777888888888888888888888877666655556666
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhC
Q 016027 113 NILLNGWFRSKNVKDAERFWLEMRKE 138 (396)
Q Consensus 113 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 138 (396)
..++.++...|+.++|..+|+.+++.
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 66777777888888888888887765
No 189
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.08 E-value=5.3e-05 Score=61.27 Aligned_cols=96 Identities=9% Similarity=-0.041 Sum_probs=79.0
Q ss_pred hhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHc
Q 016027 6 AKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQ 85 (396)
Q Consensus 6 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 85 (396)
.+.|++++|...|..+++..+.. .....++..++..|...|++++|+..|+.+.+..+ +.+..+.++..++.++...
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s-~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP--~s~~~~dAl~klg~~~~~~ 230 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDS-TYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYP--KSPKAADAMFKVGVIMQDK 230 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC--CCcchhHHHHHHHHHHHHc
Confidence 56799999999999999864322 12246899999999999999999999999987642 3355677888889999999
Q ss_pred CChHHHHHHHHHHhhccCC
Q 016027 86 GRVKAASEYFHKRKELDQS 104 (396)
Q Consensus 86 ~~~~~A~~~~~~~~~~~~~ 104 (396)
|+.++|.++|+.+.+..|+
T Consensus 231 g~~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 231 GDTAKAKAVYQQVIKKYPG 249 (263)
T ss_pred CCHHHHHHHHHHHHHHCcC
Confidence 9999999999999886443
No 190
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.06 E-value=0.00014 Score=60.05 Aligned_cols=131 Identities=9% Similarity=0.076 Sum_probs=82.9
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHH-HhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 016027 215 VTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRY-FSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKI 293 (396)
Q Consensus 215 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 293 (396)
.+|..+++...+.+..+.|..+|.+..+.+ ..+..+|...... +...++.+.|.++|+...+. ...+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 356777777777777788888887777543 2244445444444 23345666678888777765 34466667777777
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCC---hhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 016027 294 LCKEDKLDLAIQVSKEMKCRGCDID---LDTSTMLIHLLCRMYKFDEASAEFEDMIRR 348 (396)
Q Consensus 294 ~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 348 (396)
+...|+.+.|+.+|++.... +.++ ...|...+..-.+.|+.+.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 77777778888888777754 2211 246777777777777777777777777663
No 191
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.02 E-value=5e-05 Score=62.98 Aligned_cols=273 Identities=15% Similarity=0.063 Sum_probs=171.3
Q ss_pred hhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccc-cCCCCchhHHHHHHHHH
Q 016027 4 VLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMV-KNFDSGASLFEILLDSL 82 (396)
Q Consensus 4 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~ 82 (396)
-+++.|+...-+..|+.+++.+...-..-..+|..|+.+|.-.+++++|+++...=+..... .+-......-..|+..+
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtl 105 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTL 105 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchh
Confidence 36789999999999999998654211111246667788888888999998875532221110 01112223344577777
Q ss_pred HHcCChHHHHHHHHH----HhhccCCCCCChHHHHHHHHHHHhcCC--------------------hhHHHHHHHHHHh-
Q 016027 83 CKQGRVKAASEYFHK----RKELDQSWAPTVRVYNILLNGWFRSKN--------------------VKDAERFWLEMRK- 137 (396)
Q Consensus 83 ~~~~~~~~A~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~~~~- 137 (396)
.-.|.+++|+....+ +.+++..+ .....+..+...|...|+ ++.|.+.|.+-++
T Consensus 106 Kv~G~fdeA~~cc~rhLd~areLgDrv-~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l 184 (639)
T KOG1130|consen 106 KVKGAFDEALTCCFRHLDFARELGDRV-LESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLEL 184 (639)
T ss_pred hhhcccchHHHHHHHHhHHHHHHhHHH-hhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 778888888765443 22221111 123445567777765543 3445555543221
Q ss_pred ---CCCC-CChhHHHHHHHHHHccCCHHHHHHHHHHHH----HcCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 016027 138 ---ENVT-PNVVTYGTLVEGYCRLRRVDRAIRLVKEMR----KEGI-EPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVC 208 (396)
Q Consensus 138 ---~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 208 (396)
.|-. .--.+|..|.+.|.-.|+++.|+...+.-+ +.|- ......+..+.+++.-.|+++.|.+.|+.....
T Consensus 185 ~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 185 SEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL 264 (639)
T ss_pred HHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence 1211 123456777777788899999987665432 2231 123456778889999999999999998875432
Q ss_pred ----CC-CCchhhHHHHHHHHHhcCChHHHHHHHHHHHHC-----CCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 016027 209 ----EP-GPTMVTYTSLVKGYCKAGDLEGASKILKMMISR-----GFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIE 277 (396)
Q Consensus 209 ----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 277 (396)
|- .....+...|.++|.-..+++.|+.++..-... +..-....+..|..++...|.-++|+.+...-.+
T Consensus 265 Aielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 265 AIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 22 234456667888998888999999887654321 1122466888899999999999999887766544
No 192
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.00 E-value=0.00021 Score=47.97 Aligned_cols=76 Identities=11% Similarity=0.209 Sum_probs=48.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCC-CCChhhHHHHHHHHHhcC--------ChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 016027 291 LKILCKEDKLDLAIQVSKEMKCRGC-DIDLDTSTMLIHLLCRMY--------KFDEASAEFEDMIRRGLVPHYLTFKRLN 361 (396)
Q Consensus 291 ~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 361 (396)
+..+...+++...-.+|+.+++.|+ -|+..+|+.++.+..+.. +.-+.+.+|++|+..+++|+..+|+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3334444666666666666666666 566666666666555432 3445667778888777888888888877
Q ss_pred HHHHH
Q 016027 362 DEFKK 366 (396)
Q Consensus 362 ~~~~~ 366 (396)
..+.+
T Consensus 112 ~~Llk 116 (120)
T PF08579_consen 112 GSLLK 116 (120)
T ss_pred HHHHH
Confidence 77654
No 193
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.00 E-value=3.5e-05 Score=48.38 Aligned_cols=65 Identities=25% Similarity=0.250 Sum_probs=50.4
Q ss_pred chhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcC-ChhHHHHHHHHHHhC
Q 016027 71 GASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSK-NVKDAERFWLEMRKE 138 (396)
Q Consensus 71 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~ 138 (396)
++.+|..++..+...|++++|+..|+++.+.+|. +...|..+..++...| ++++|++.+++.++.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~---~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN---NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT---HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 4567778888888888888888888888877654 6677888888888888 688888888877653
No 194
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.97 E-value=0.0033 Score=53.11 Aligned_cols=90 Identities=17% Similarity=0.118 Sum_probs=50.1
Q ss_pred CCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHH---cCChHHHHHHHHHHhhccC
Q 016027 27 VPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCK---QGRVKAASEYFHKRKELDQ 103 (396)
Q Consensus 27 ~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~ 103 (396)
.|...+.++...++-+|....+++.-+++.+.+....... +...+.+-...+-++.+ .|+.++|++++..+...
T Consensus 135 ~~~~ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~-~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~-- 211 (374)
T PF13281_consen 135 DPELLSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCD-VANQHNIKFQYAFALNRRNKPGDREKALQILLPVLES-- 211 (374)
T ss_pred CHhhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccc-hhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc--
Confidence 3444455566666666777777777776666666642211 23344444455555555 66666777666664333
Q ss_pred CCCCChHHHHHHHHHH
Q 016027 104 SWAPTVRVYNILLNGW 119 (396)
Q Consensus 104 ~~~~~~~~~~~l~~~~ 119 (396)
...++..+|..+...|
T Consensus 212 ~~~~~~d~~gL~GRIy 227 (374)
T PF13281_consen 212 DENPDPDTLGLLGRIY 227 (374)
T ss_pred cCCCChHHHHHHHHHH
Confidence 2234555555555544
No 195
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.97 E-value=0.0083 Score=51.01 Aligned_cols=370 Identities=12% Similarity=0.077 Sum_probs=191.7
Q ss_pred hhhhccCchhHHHHHHHHhCCCC-CCCCCChhHHH-HHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHH
Q 016027 4 VLAKAKEFDSAWCLLLDKIGGHE-VPDFVSKDTFV-ILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDS 81 (396)
Q Consensus 4 ~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 81 (396)
.+.+++++.+|..+|.++.++.. .|..+..+.+. .++++|. .++.+.-...+....+.. |..+..-....-.
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAff-l~nld~Me~~l~~l~~~~-----~~s~~l~LF~~L~ 88 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFF-LNNLDLMEKQLMELRQQF-----GKSAYLPLFKALV 88 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHH-HhhHHHHHHHHHHHHHhc-----CCchHHHHHHHHH
Confidence 35678999999999999887543 22222222222 4445543 445665555555555542 3222222222333
Q ss_pred HHHcCChHHHHHHHHHHhhccCCCCC------------ChHHHHHHHHHHHhcCChhHHHHHHHHHHhCC----CCCChh
Q 016027 82 LCKQGRVKAASEYFHKRKELDQSWAP------------TVRVYNILLNGWFRSKNVKDAERFWLEMRKEN----VTPNVV 145 (396)
Q Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~ 145 (396)
..+.+.+.+|.+.+......-.+..| |...=+..++++...|++.++..+++++...= ..-+..
T Consensus 89 ~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d 168 (549)
T PF07079_consen 89 AYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSD 168 (549)
T ss_pred HHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHH
Confidence 45788999999988876654222221 22223556788899999999999998887642 335777
Q ss_pred HHHHHHHHHHccC---------------CHHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHH-------------
Q 016027 146 TYGTLVEGYCRLR---------------RVDRAIRLVKEMRKEG------IEPNAIVYNTVIDGLVE------------- 191 (396)
Q Consensus 146 ~~~~l~~~~~~~~---------------~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~------------- 191 (396)
+|+.++-.+.++= -++.+.-+.+++.... +.|....+..++....-
T Consensus 169 ~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l 248 (549)
T PF07079_consen 169 MYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQIL 248 (549)
T ss_pred HHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHH
Confidence 8877544443321 1222333333332211 12222222222211110
Q ss_pred -----------------------cCCHHHHHHHHHHHHhcCCC----CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 016027 192 -----------------------AGRFEEVSGMMERFLVCEPG----PTMVTYTSLVKGYCKAGDLEGASKILKMMISRG 244 (396)
Q Consensus 192 -----------------------~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 244 (396)
..+.+++..+-+.+.....+ .-..+|..++....+.++...|.+.+.-+....
T Consensus 249 ~~We~~yv~p~~~LVi~~L~~~f~~~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ld 328 (549)
T PF07079_consen 249 ENWENFYVHPNYDLVIEPLKQQFMSDPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILD 328 (549)
T ss_pred HHHHhhccCCchhHHHHHHHHHHhcChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC
Confidence 01233333333322221111 123456666777777777777777766665432
Q ss_pred CCC-------------------ChhhHHHH------------------------H---HHHhccCC-HHHHHHHHHHHHH
Q 016027 245 FLP-------------------SPTTYNYF------------------------F---RYFSKFGK-VEDAMNLYRKMIE 277 (396)
Q Consensus 245 ~~~-------------------~~~~~~~l------------------------~---~~~~~~~~-~~~a~~~~~~~~~ 277 (396)
+.. |...++.+ + .-+-+.|. -++|+.+++.+.+
T Consensus 329 p~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ 408 (549)
T PF07079_consen 329 PRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQ 408 (549)
T ss_pred CcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 111 00011100 0 00112233 5566666666655
Q ss_pred CCCCCChhhHHHHH----HHHHh---cCCHHHHHHHHHHHHHcCCCCCh----hhHHHHHHH--HHhcCChhHHHHHHHH
Q 016027 278 SGYTPDRLTYHILL----KILCK---EDKLDLAIQVSKEMKCRGCDIDL----DTSTMLIHL--LCRMYKFDEASAEFED 344 (396)
Q Consensus 278 ~~~~~~~~~~~~l~----~~~~~---~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~--~~~~~~~~~a~~~~~~ 344 (396)
-. +-|...-+.+. .+|.. ...+.+-..+-+-+.+.|+.|-. ..-|.|.++ +...|++.++.-.-.-
T Consensus 409 ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~W 487 (549)
T PF07079_consen 409 FT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSW 487 (549)
T ss_pred hc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 32 11322222221 12221 22334444444444555665433 333444433 4567888887655444
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhc
Q 016027 345 MIRRGLVPHYLTFKRLNDEFKKRGMTALAQKLCNVMSS 382 (396)
Q Consensus 345 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 382 (396)
+.+ +.|++.+|+.+.-++....++++|..++.+++-
T Consensus 488 L~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~ 523 (549)
T PF07079_consen 488 LTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLPP 523 (549)
T ss_pred HHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCCC
Confidence 443 678999999999999999999999999988765
No 196
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=0.00096 Score=53.57 Aligned_cols=116 Identities=13% Similarity=0.090 Sum_probs=74.5
Q ss_pred HHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccC---CHHHHHHH
Q 016027 90 AASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLR---RVDRAIRL 166 (396)
Q Consensus 90 ~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~ 166 (396)
....-++.-...+|+ |...|-.|...|...|++..|..-|.+..+.. .++...+..+..++.... ...++..+
T Consensus 140 ~l~a~Le~~L~~nP~---d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 140 ALIARLETHLQQNPG---DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred HHHHHHHHHHHhCCC---CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 333334444444554 77777777777777777777777777777653 235556666655554432 34567777
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 016027 167 VKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEP 210 (396)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 210 (396)
+++++..+ +.+......+...+...|++.+|...|+.|++..+
T Consensus 216 l~~al~~D-~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 216 LRQALALD-PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred HHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 77777764 44556666666777777777777777777777543
No 197
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.90 E-value=0.00017 Score=56.95 Aligned_cols=101 Identities=15% Similarity=-0.028 Sum_probs=56.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHH
Q 016027 36 FVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNIL 115 (396)
Q Consensus 36 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 115 (396)
.+..+-.+...|++..|.+.|....+.-+.. +-.+.++.-|+.++...|++++|..+|..+.+..|..+.-...+..|
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s--~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNS--TYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--cccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 3334444455566666666666655544322 33344455566666666666666666666655555444445555566
Q ss_pred HHHHHhcCChhHHHHHHHHHHhC
Q 016027 116 LNGWFRSKNVKDAERFWLEMRKE 138 (396)
Q Consensus 116 ~~~~~~~~~~~~a~~~~~~~~~~ 138 (396)
..+..+.|+.++|..+|+++.+.
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHH
Confidence 66666666666666666666554
No 198
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.87 E-value=0.011 Score=49.24 Aligned_cols=283 Identities=16% Similarity=0.063 Sum_probs=178.0
Q ss_pred ccCchhHHHHHHHHhCCCCCCCCCChhHHHHH--HHHHHHcCCHHHHHHHHHHHhhcccccCCCCchh-HHHHHHHHHHH
Q 016027 8 AKEFDSAWCLLLDKIGGHEVPDFVSKDTFVIL--IRRYARAGMVEAAIWTFEFANNLDMVKNFDSGAS-LFEILLDSLCK 84 (396)
Q Consensus 8 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l--~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~ 84 (396)
.|+-..|.++-.+.-+. ...+ ...+..+ .+.-.-.|+++.|.+-|+.|... |.... -...|.-.-.+
T Consensus 97 AGda~lARkmt~~~~~l-lssD---qepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d------PEtRllGLRgLyleAqr 166 (531)
T COG3898 97 AGDASLARKMTARASKL-LSSD---QEPLIHLLEAQAALLEGDYEDARKKFEAMLDD------PETRLLGLRGLYLEAQR 166 (531)
T ss_pred cCchHHHHHHHHHHHhh-hhcc---chHHHHHHHHHHHHhcCchHHHHHHHHHHhcC------hHHHHHhHHHHHHHHHh
Confidence 56777777766554321 1222 2234433 44566689999999999999874 22111 12223333446
Q ss_pred cCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCChh--HHHHHHHHHH---ccC
Q 016027 85 QGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKEN-VTPNVV--TYGTLVEGYC---RLR 158 (396)
Q Consensus 85 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~--~~~~l~~~~~---~~~ 158 (396)
.|..+.|..+-+.+...-|. -...+...+...+..|+|+.|+++.+.-++.. +.++.. .-..|+.+-. -..
T Consensus 167 ~GareaAr~yAe~Aa~~Ap~---l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~lda 243 (531)
T COG3898 167 LGAREAARHYAERAAEKAPQ---LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDA 243 (531)
T ss_pred cccHHHHHHHHHHHHhhccC---CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcC
Confidence 79999999988888765433 45678889999999999999999998766542 334432 1222332211 123
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHH
Q 016027 159 RVDRAIRLVKEMRKEGIEPNAIV-YNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKIL 237 (396)
Q Consensus 159 ~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 237 (396)
+...|...-.+..+. .|+..- -..-..++.+.|+..++-.+++.+-+..+.|++. .+-.+.+.|+ .+..-+
T Consensus 244 dp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia----~lY~~ar~gd--ta~dRl 315 (531)
T COG3898 244 DPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA----LLYVRARSGD--TALDRL 315 (531)
T ss_pred ChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH----HHHHHhcCCC--cHHHHH
Confidence 555666655555544 444332 2234577889999999999999998876665532 2223445554 344444
Q ss_pred HHHHHC-CCC-CChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh-cCCHHHHHHHHHHHHHc
Q 016027 238 KMMISR-GFL-PSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCK-EDKLDLAIQVSKEMKCR 313 (396)
Q Consensus 238 ~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~ 313 (396)
+...+. .++ .+......+..+....|++..|..--+..... .|....|..|...-.. .|+-.++...+.+..+.
T Consensus 316 kRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 316 KRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 333321 122 25566777778888889998887766665553 6777888877776544 59999999999988764
No 199
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=0.00028 Score=58.81 Aligned_cols=127 Identities=17% Similarity=0.089 Sum_probs=77.3
Q ss_pred hhhhhccCchhHHHHHHHHhCCCCCCCCCC-----------hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCc
Q 016027 3 KVLAKAKEFDSAWCLLLDKIGGHEVPDFVS-----------KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSG 71 (396)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 71 (396)
+.|.+.|+|..|...|.+++..-..-..++ ...+..++-++.+.+++..|++.-++++..+ |.|
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-----~~N 290 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-----PNN 290 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-----CCc
Confidence 467889999999998888765322111000 2245566666667777777777777766665 666
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChh-HHHHHHHHHHh
Q 016027 72 ASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVK-DAERFWLEMRK 137 (396)
Q Consensus 72 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~ 137 (396)
......-+.++...|+++.|+..|+++.+..|. |-.+-+.++.+..+..+.. ...++|..|..
T Consensus 291 ~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~---Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 291 VKALYRRGQALLALGEYDLARDDFQKALKLEPS---NKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred hhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 666666677777777777777777777666544 4444555555444444333 33555665543
No 200
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.84 E-value=0.006 Score=45.27 Aligned_cols=132 Identities=12% Similarity=0.066 Sum_probs=75.7
Q ss_pred CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCC-CChhhHHHH
Q 016027 212 PTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYT-PDRLTYHIL 290 (396)
Q Consensus 212 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l 290 (396)
|+......|..+....|++.+|...|.+...--...|....-.+.++....+++..|...++++.+.+.. -++.+...+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 4555555566666666666666666666665444455556666666666666666666666666654310 012233445
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 016027 291 LKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDM 345 (396)
Q Consensus 291 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 345 (396)
.+.+...|+...|+..|+..... -|+...-......+.+.|+.+++..-+..+
T Consensus 167 aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 56666667766677766666654 334444444445556666655555444333
No 201
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.83 E-value=0.015 Score=49.50 Aligned_cols=133 Identities=14% Similarity=0.108 Sum_probs=86.2
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHHCC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 016027 251 TYNYFFRYFSKFGKVEDAMNLYRKMIESG-YTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLL 329 (396)
Q Consensus 251 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 329 (396)
+|...+....+....+.|..+|-++.+.+ ..++...+++++..++ .|+...|..+|+.-...- +.++..-+..+..+
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f-~d~~~y~~kyl~fL 476 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF-PDSTLYKEKYLLFL 476 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC-CCchHHHHHHHHHH
Confidence 34455555566667778888888887776 4566777777776554 467777888887765542 22333335566667
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCchHHHHHHHHHhccchh
Q 016027 330 CRMYKFDEASAEFEDMIRRGLVPH--YLTFKRLNDEFKKRGMTALAQKLCNVMSSVPRS 386 (396)
Q Consensus 330 ~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 386 (396)
...++-+.|..+|+..+.+ +..+ ...|..++.--..-|+...+..+=++|...-++
T Consensus 477 i~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQ 534 (660)
T COG5107 477 IRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQ 534 (660)
T ss_pred HHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCc
Confidence 7778888888888865542 1222 356777777777778887777666666554333
No 202
>PRK15331 chaperone protein SicA; Provisional
Probab=97.83 E-value=0.00098 Score=48.65 Aligned_cols=97 Identities=11% Similarity=0.024 Sum_probs=74.8
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHH
Q 016027 34 DTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYN 113 (396)
Q Consensus 34 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 113 (396)
...+..+.-+.+.|++++|..+|..+...+ +.++..+..|+.++...+++++|+..|..+...+.. |...+.
T Consensus 38 e~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d-----~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~---dp~p~f 109 (165)
T PRK15331 38 DGLYAHAYEFYNQGRLDEAETFFRFLCIYD-----FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN---DYRPVF 109 (165)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC---CCCccc
Confidence 355566777778888888888888888765 667777888888888888888888888887766433 444566
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhC
Q 016027 114 ILLNGWFRSKNVKDAERFWLEMRKE 138 (396)
Q Consensus 114 ~l~~~~~~~~~~~~a~~~~~~~~~~ 138 (396)
....++...|+.+.|...|......
T Consensus 110 ~agqC~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 110 FTGQCQLLMRKAAKARQCFELVNER 134 (165)
T ss_pred hHHHHHHHhCCHHHHHHHHHHHHhC
Confidence 6778888888888888888887763
No 203
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.82 E-value=2.9e-05 Score=39.69 Aligned_cols=29 Identities=41% Similarity=0.653 Sum_probs=15.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 016027 321 TSTMLIHLLCRMYKFDEASAEFEDMIRRG 349 (396)
Q Consensus 321 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 349 (396)
+|+.++.+|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555443
No 204
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.82 E-value=3e-05 Score=39.61 Aligned_cols=29 Identities=28% Similarity=0.536 Sum_probs=16.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 016027 111 VYNILLNGWFRSKNVKDAERFWLEMRKEN 139 (396)
Q Consensus 111 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 139 (396)
+|+.++++|.+.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555544
No 205
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.82 E-value=0.00052 Score=52.32 Aligned_cols=88 Identities=14% Similarity=0.183 Sum_probs=57.3
Q ss_pred CCChHHHHHHHHHHHh-----cCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccC----------------CHHHHH
Q 016027 106 APTVRVYNILLNGWFR-----SKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLR----------------RVDRAI 164 (396)
Q Consensus 106 ~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------------~~~~a~ 164 (396)
..+..+|..++..+.+ .|..+-....+..|.+-|+.-|..+|+.|++.+=+.. +.+-|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 3467777777777765 4677778888888888899989999999988875422 223445
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 016027 165 RLVKEMRKEGIEPNAIVYNTVIDGLVEAG 193 (396)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 193 (396)
+++++|...|+-||..++..+++.+.+.+
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 55555555555555555555555544433
No 206
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.77 E-value=0.0028 Score=45.20 Aligned_cols=73 Identities=16% Similarity=0.069 Sum_probs=61.3
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCC
Q 016027 32 SKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWA 106 (396)
Q Consensus 32 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 106 (396)
+...+..-+....+.|++++|++.|+.+...-+.+ +-...+...|+.+|.+.+++++|...+++.++++|..+
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g--~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp 81 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFG--EYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHP 81 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC
Confidence 36778888888999999999999999998875433 44566778899999999999999999999999987743
No 207
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.75 E-value=0.00015 Score=46.14 Aligned_cols=59 Identities=25% Similarity=0.236 Sum_probs=42.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccC
Q 016027 40 IRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQ 103 (396)
Q Consensus 40 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 103 (396)
...|.+.+++++|+++++.+.... |.++..+...+.++...|++++|.+.|+.+.+..|
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~-----p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELD-----PDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC-----cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 345677777777777777777764 66777777777777777777777777777776543
No 208
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.70 E-value=0.00028 Score=44.83 Aligned_cols=59 Identities=19% Similarity=0.245 Sum_probs=52.3
Q ss_pred ChhhhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcc
Q 016027 1 MIKVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLD 63 (396)
Q Consensus 1 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 63 (396)
|-..|.+.++++.|+..++.++.. .|+ +...|...+.++...|++++|.+.|+++.+..
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~--~p~--~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALEL--DPD--DPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHh--Ccc--cchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 456789999999999999999985 455 46799999999999999999999999999874
No 209
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.68 E-value=0.0023 Score=54.85 Aligned_cols=65 Identities=17% Similarity=0.067 Sum_probs=55.5
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCch---hHHHHHHHHHHHcCChHHHHHHHHHHhhc
Q 016027 32 SKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGA---SLFEILLDSLCKQGRVKAASEYFHKRKEL 101 (396)
Q Consensus 32 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 101 (396)
+..+|+.++.+|...|++++|+..|++++..+ |.+. .+|++++.+|...|++++|++.++++.+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~-----Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELN-----PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 46789999999999999999999999998875 5555 34888999999999999999999998875
No 210
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.67 E-value=0.00021 Score=46.14 Aligned_cols=68 Identities=21% Similarity=0.269 Sum_probs=50.2
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccC-CCC-chhHHHHHHHHHHHcCChHHHHHHHHHHhh
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKN-FDS-GASLFEILLDSLCKQGRVKAASEYFHKRKE 100 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 100 (396)
..++..++.+|...|++++|++.|+++.+.....+ ..+ ...++..++.++...|++++|+++++++.+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45788889999999999999999998887622111 111 255678888888888888888888888764
No 211
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.65 E-value=0.0024 Score=48.87 Aligned_cols=35 Identities=23% Similarity=0.377 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCC
Q 016027 230 LEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGK 264 (396)
Q Consensus 230 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 264 (396)
-+-|++++++|...|+.||..++..++..+.+.+.
T Consensus 119 q~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 119 QECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 34566666666666666666666666666654443
No 212
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.64 E-value=0.019 Score=45.29 Aligned_cols=132 Identities=12% Similarity=0.061 Sum_probs=86.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHH-----
Q 016027 216 TYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHIL----- 290 (396)
Q Consensus 216 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l----- 290 (396)
+.+.++.++.-.+.+.-....+.+.++...+-++.....+++.-...|+.+.|..+|++..+..-..+..+++.+
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 445566666666777777777777777665667777777777777778887777777766654323333333332
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 016027 291 LKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRR 348 (396)
Q Consensus 291 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 348 (396)
...|.-.+++..|...+.++...+.. ++...|.-.-+..-.|+..+|++.++.|.+.
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 23445566777777777777766443 5555555555555667888888888888765
No 213
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.63 E-value=0.014 Score=43.40 Aligned_cols=132 Identities=13% Similarity=0.071 Sum_probs=88.7
Q ss_pred CCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCC-CCCHHHHHH
Q 016027 106 APTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGI-EPNAIVYNT 184 (396)
Q Consensus 106 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ 184 (396)
.|++..-..|...+.+.|++.+|...|.+...--..-|......+.++....+++..|...++.+-+... .-++.+.-.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 4566666777888888888888888888877654555777777788888888888888888888776531 112334556
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHH
Q 016027 185 VIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKM 239 (396)
Q Consensus 185 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 239 (396)
+.+.+...|.+.+|...|+.....-+ +..........+.+.|+.+++..-+..
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~yp--g~~ar~~Y~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISYYP--GPQARIYYAEMLAKQGRLREANAQYVA 218 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHhCC--CHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 66778888888888888888877543 333333334455566655555443333
No 214
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.61 E-value=0.029 Score=47.55 Aligned_cols=170 Identities=14% Similarity=0.143 Sum_probs=108.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCCchhhHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCChhh
Q 016027 178 NAIVYNTVIDGLVEAGRFEEVSGMMERFLVCE---PGPTMVTYTSLVKGYCK---AGDLEGASKILKMMISRGFLPSPTT 251 (396)
Q Consensus 178 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~ 251 (396)
+..+...++-+|....+|+..+++.+.+.... ......+-...+.++.+ .|+.++|.+++..+......+++.+
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 34455566677999999999999999987641 11123333455566777 8999999999999766666788999
Q ss_pred HHHHHHHHhc---------cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC----HHHHHHHH---HH-HHHcC
Q 016027 252 YNYFFRYFSK---------FGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDK----LDLAIQVS---KE-MKCRG 314 (396)
Q Consensus 252 ~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~a~~~~---~~-~~~~~ 314 (396)
+..+.+.|-. ....++|...|++.-+.. |+..+--.++..+...|. -.+..++- .. +.+.|
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg 297 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE--PDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKG 297 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC--ccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhc
Confidence 9999887632 224677888888766653 444332222223333332 22333333 11 11222
Q ss_pred C---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 016027 315 C---DIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRG 349 (396)
Q Consensus 315 ~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 349 (396)
. ..+.-.+.+++.+..-.|+.++|.+..++|.+..
T Consensus 298 ~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 298 SLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred cccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 2 2344555778888888899999999999988753
No 215
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.61 E-value=0.0048 Score=45.45 Aligned_cols=71 Identities=18% Similarity=0.251 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHH-----cCCCCCHHHH
Q 016027 111 VYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRK-----EGIEPNAIVY 182 (396)
Q Consensus 111 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~ 182 (396)
+...++..+...|++++|..+.+.+.... +.+...|..+|.++...|+...|.+.|+.+.+ .|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 44555566666677777777777666653 23666666777777777777777776666543 3666665543
No 216
>PRK15331 chaperone protein SicA; Provisional
Probab=97.61 E-value=0.0038 Score=45.68 Aligned_cols=87 Identities=14% Similarity=0.039 Sum_probs=62.0
Q ss_pred HhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHH
Q 016027 259 FSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEA 338 (396)
Q Consensus 259 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 338 (396)
+...|++++|..+|+-+.-.++. +..-+..|..++-..+++++|...|......+.. |+..+-....++...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHHH
Confidence 45678888888888777665533 5555666777777778888888888777665543 556666677777888888888
Q ss_pred HHHHHHHHH
Q 016027 339 SAEFEDMIR 347 (396)
Q Consensus 339 ~~~~~~~~~ 347 (396)
...|+..++
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 888877776
No 217
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.60 E-value=0.05 Score=49.15 Aligned_cols=109 Identities=13% Similarity=0.156 Sum_probs=75.3
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHH
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVY 112 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 112 (396)
..+|..++..+.....|++|.+.|...... ...+.++.+..++++-..+-+.+.+ +....
T Consensus 796 e~A~r~ig~~fa~~~~We~A~~yY~~~~~~-------------e~~~ecly~le~f~~LE~la~~Lpe-------~s~ll 855 (1189)
T KOG2041|consen 796 EDAFRNIGETFAEMMEWEEAAKYYSYCGDT-------------ENQIECLYRLELFGELEVLARTLPE-------DSELL 855 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccch-------------HhHHHHHHHHHhhhhHHHHHHhcCc-------ccchH
Confidence 457777888888888888888887765442 2466677776777665555544433 56677
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHH
Q 016027 113 NILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEM 170 (396)
Q Consensus 113 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 170 (396)
-.+..++...|.-++|.+.|-+ .+.+ ...+..|...++|.+|.++-++.
T Consensus 856 p~~a~mf~svGMC~qAV~a~Lr---~s~p------kaAv~tCv~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 856 PVMADMFTSVGMCDQAVEAYLR---RSLP------KAAVHTCVELNQWGEAVELAQRF 904 (1189)
T ss_pred HHHHHHHHhhchHHHHHHHHHh---ccCc------HHHHHHHHHHHHHHHHHHHHHhc
Confidence 7888899999999999887743 2222 23456778888888888876654
No 218
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.59 E-value=0.033 Score=46.63 Aligned_cols=298 Identities=13% Similarity=0.086 Sum_probs=195.7
Q ss_pred HHHHHHHHHHH--cCChHHHHHHHHHHhhccCCCCCChHHHHHHHHH--HHhcCChhHHHHHHHHHHhCCCCCChhH--H
Q 016027 74 LFEILLDSLCK--QGRVKAASEYFHKRKELDQSWAPTVRVYNILLNG--WFRSKNVKDAERFWLEMRKENVTPNVVT--Y 147 (396)
Q Consensus 74 ~~~~l~~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~ 147 (396)
-|..|-.++.. .|+-..|.++-.+..+. +..|......++.+ ..-.|+++.|.+-|+.|... |.... +
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l---lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGL 157 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL---LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGL 157 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh---hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhH
Confidence 36666666554 57888888888776643 22344455555543 34579999999999999863 23222 2
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCchh--hHHHHHHHH
Q 016027 148 GTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCE-PGPTMV--TYTSLVKGY 224 (396)
Q Consensus 148 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~--~~~~l~~~~ 224 (396)
..|.-...+.|+.+.|..+-++....- +.-.......+...+..|+|+.|+++++.-.+.. +.++.. .-..|+.+-
T Consensus 158 RgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAk 236 (531)
T COG3898 158 RGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAK 236 (531)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHH
Confidence 233333456789999998888877663 3345677889999999999999999998876542 223322 122222221
Q ss_pred ---HhcCChHHHHHHHHHHHHCCCCCChh-hHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH
Q 016027 225 ---CKAGDLEGASKILKMMISRGFLPSPT-TYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKL 300 (396)
Q Consensus 225 ---~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 300 (396)
.-..+...|...-.+..+. .|+.. .-..-..++.+.|+..++-.+++.+-+.... +..... ..+.+.|+.
T Consensus 237 A~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePH--P~ia~l--Y~~ar~gdt 310 (531)
T COG3898 237 AMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPH--PDIALL--YVRARSGDT 310 (531)
T ss_pred HHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCC--hHHHHH--HHHhcCCCc
Confidence 1124566677666666654 44432 2334457788999999999999999887544 443332 234455553
Q ss_pred HHHHHHHHHHHHc-CCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HHcCCchHHHHHH
Q 016027 301 DLAIQVSKEMKCR-GCDI-DLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEF-KKRGMTALAQKLC 377 (396)
Q Consensus 301 ~~a~~~~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~~~A~~~~ 377 (396)
+..-+++..+. ..+| +..+...+..+-...|++..|..--+...+. .|....|..+.+.- ...|+-.++..++
T Consensus 311 --a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wl 386 (531)
T COG3898 311 --ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWL 386 (531)
T ss_pred --HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHH
Confidence 44444443332 1222 5667777888888899999998887777653 67788888777765 4569999999999
Q ss_pred HHHhccchhhh
Q 016027 378 NVMSSVPRSME 388 (396)
Q Consensus 378 ~~~~~~~~~~~ 388 (396)
-+..+.|..|.
T Consensus 387 Aqav~APrdPa 397 (531)
T COG3898 387 AQAVKAPRDPA 397 (531)
T ss_pred HHHhcCCCCCc
Confidence 99888776654
No 219
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.56 E-value=0.0074 Score=44.47 Aligned_cols=71 Identities=20% Similarity=0.228 Sum_probs=50.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----cCCCCchhhH
Q 016027 146 TYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLV-----CEPGPTMVTY 217 (396)
Q Consensus 146 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~ 217 (396)
+...++..+...|++++|..+++.+.... +.+...+..++.++...|+...|.+.|+++.. .|..|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 45667777888889999999988888875 56777888889999999999998888887653 4777776553
No 220
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.54 E-value=0.058 Score=48.30 Aligned_cols=98 Identities=15% Similarity=0.098 Sum_probs=53.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 016027 216 TYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILC 295 (396)
Q Consensus 216 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 295 (396)
+...+...+.+...+..|-++|..|-. ...++......++|++|..+-+..-+. -...|....+.++
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe~----~~dVy~pyaqwLA 815 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPEF----KDDVYMPYAQWLA 815 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCccc----cccccchHHHHhh
Confidence 333344444444555556666655432 223455556666666666655543322 1223334444455
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 016027 296 KEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRR 348 (396)
Q Consensus 296 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 348 (396)
...++++|.+ +|.+.|+-.+|..+++++...
T Consensus 816 E~DrFeEAqk----------------------AfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 816 ENDRFEEAQK----------------------AFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hhhhHHHHHH----------------------HHHHhcchHHHHHHHHHhhhh
Confidence 5555555543 456677888888888887653
No 221
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.54 E-value=0.004 Score=49.49 Aligned_cols=96 Identities=19% Similarity=0.145 Sum_probs=62.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-C-ChhHHHHHHHHHH
Q 016027 78 LLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVT-P-NVVTYGTLVEGYC 155 (396)
Q Consensus 78 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~ 155 (396)
....+.+.|++..|...|....+.-|+-.-....+.-|..++...|+++.|..+|..+.+.-+. | -+.++--|..+..
T Consensus 147 ~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~ 226 (262)
T COG1729 147 AALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLG 226 (262)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHH
Confidence 3334446666777777777777766655445555666777777777777777777777665211 1 2345666666677
Q ss_pred ccCCHHHHHHHHHHHHHc
Q 016027 156 RLRRVDRAIRLVKEMRKE 173 (396)
Q Consensus 156 ~~~~~~~a~~~~~~~~~~ 173 (396)
+.|+.++|..+|+++.+.
T Consensus 227 ~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 227 RLGNTDEACATLQQVIKR 244 (262)
T ss_pred HhcCHHHHHHHHHHHHHH
Confidence 777777777777777766
No 222
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.50 E-value=0.031 Score=44.20 Aligned_cols=70 Identities=17% Similarity=0.021 Sum_probs=49.3
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCC
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQS 104 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 104 (396)
...|..-+....+.|++++|...|+.+....+. .|-...+...++.++.+.++++.|+..+++.....|+
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~--s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~ 103 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPF--SPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPT 103 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC
Confidence 456777777777888888888888877765432 2444556666777777778888888888877776554
No 223
>PRK11906 transcriptional regulator; Provisional
Probab=97.50 E-value=0.016 Score=50.01 Aligned_cols=149 Identities=11% Similarity=0.090 Sum_probs=101.6
Q ss_pred CchhHHHHHHHHhCC-CCCCCCCChhHHHHHHHHHHHc---------CCHHHHHHHHHHHhhcccccCCCCchhHHHHHH
Q 016027 10 EFDSAWCLLLDKIGG-HEVPDFVSKDTFVILIRRYARA---------GMVEAAIWTFEFANNLDMVKNFDSGASLFEILL 79 (396)
Q Consensus 10 ~~~~A~~~~~~~~~~-~~~p~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~ 79 (396)
..+.|+.+|.+++.. ..+|+. ..+|..++.++... ....+|.+.-+++.+.+ +.|+.+...++
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~--a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-----~~Da~a~~~~g 345 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLK--TECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-----TVDGKILAIMG 345 (458)
T ss_pred HHHHHHHHHHHHhhcccCCccc--HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-----CCCHHHHHHHH
Confidence 456788899999922 135653 44555555544432 34557888888888876 88899999999
Q ss_pred HHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-CChhHHHHHHHHHHccC
Q 016027 80 DSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVT-PNVVTYGTLVEGYCRLR 158 (396)
Q Consensus 80 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~ 158 (396)
.+....++++.|..+|+++...+|+ ...+|....-...-.|+.++|.+.+++..+..+. .-.......+..|+. .
T Consensus 346 ~~~~~~~~~~~a~~~f~rA~~L~Pn---~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~-~ 421 (458)
T PRK11906 346 LITGLSGQAKVSHILFEQAKIHSTD---IASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVP-N 421 (458)
T ss_pred HHHHhhcchhhHHHHHHHHhhcCCc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcC-C
Confidence 9888889999999999999988766 4556666666667789999999999987665322 112233333445554 3
Q ss_pred CHHHHHHHHHH
Q 016027 159 RVDRAIRLVKE 169 (396)
Q Consensus 159 ~~~~a~~~~~~ 169 (396)
..+.|+++|-+
T Consensus 422 ~~~~~~~~~~~ 432 (458)
T PRK11906 422 PLKNNIKLYYK 432 (458)
T ss_pred chhhhHHHHhh
Confidence 45667666643
No 224
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.47 E-value=0.081 Score=48.24 Aligned_cols=315 Identities=10% Similarity=0.059 Sum_probs=174.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCCh--HHHHHHHHHHhhccCCCCCChHHHHHH
Q 016027 38 ILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRV--KAASEYFHKRKELDQSWAPTVRVYNIL 115 (396)
Q Consensus 38 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~A~~~~~~~~~~~~~~~~~~~~~~~l 115 (396)
.++.-+...+.+..|+++-..+.... .....+|......+.+..+. +++++.+++-... .. -....|..+
T Consensus 442 ~vi~Rl~~r~~Y~vaIQva~~l~~p~-----~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~--~~-~~~iSy~~i 513 (829)
T KOG2280|consen 442 VVIDRLVDRHLYSVAIQVAKLLNLPE-----SQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSA--KL-TPGISYAAI 513 (829)
T ss_pred hhhHHHHhcchhHHHHHHHHHhCCcc-----ccccHHHHHHHHHHHhccCccchHHHHHHHHHhcc--cC-CCceeHHHH
Confidence 56777788888999998887775532 12256788888888877432 2233333322221 11 245578888
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCC----CChhHHHHHHHHHHccCCHHHHHHHHHHHHHcC-----------CCCCHH
Q 016027 116 LNGWFRSKNVKDAERFWLEMRKENVT----PNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEG-----------IEPNAI 180 (396)
Q Consensus 116 ~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----------~~~~~~ 180 (396)
+.-....|+++-|..+++.=...+-. .+..-+...+.-+.+.|+.+-...++-.+...- .+....
T Consensus 514 A~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~ 593 (829)
T KOG2280|consen 514 ARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALS 593 (829)
T ss_pred HHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhH
Confidence 88888999999998887642211100 112233444555666777766666655554331 111111
Q ss_pred HHHHHHH--------HHHHcCCHHHHHHHH--HHHHhc-CCCCchhhHHHHHHHHHhcCChHHH----------HHHHHH
Q 016027 181 VYNTVID--------GLVEAGRFEEVSGMM--ERFLVC-EPGPTMVTYTSLVKGYCKAGDLEGA----------SKILKM 239 (396)
Q Consensus 181 ~~~~l~~--------~~~~~~~~~~a~~~~--~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a----------~~~~~~ 239 (396)
.|.-+++ -+.+.++-.++...| +..... ...+-........+.+.+.....-. ..+.+.
T Consensus 594 lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~ 673 (829)
T KOG2280|consen 594 LYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRT 673 (829)
T ss_pred HHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 2222221 011111111121111 110000 0111112223344445444332111 112222
Q ss_pred HHH-CCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 016027 240 MIS-RGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDID 318 (396)
Q Consensus 240 ~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 318 (396)
+.. .+.....-+.+--+.-+...|+-.+|.++-.+.. -||...|..-+.+++..+++++-+++-+... .
T Consensus 674 Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------s 743 (829)
T KOG2280|consen 674 LEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------S 743 (829)
T ss_pred HHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------C
Confidence 221 1222333455555666677788888888776653 4688888888899999999988777655443 3
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHH
Q 016027 319 LDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFKKRGMTALAQKLCNV 379 (396)
Q Consensus 319 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 379 (396)
+.-|.....+|.+.|+.++|.+.+-+.-. +.....+|.+.|++.+|.+..-+
T Consensus 744 PIGy~PFVe~c~~~~n~~EA~KYiprv~~---------l~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 744 PIGYLPFVEACLKQGNKDEAKKYIPRVGG---------LQEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred CCCchhHHHHHHhcccHHHHhhhhhccCC---------hHHHHHHHHHhccHHHHHHHHHH
Confidence 56677888999999999999988765421 11566778888888888765433
No 225
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.47 E-value=0.0054 Score=52.68 Aligned_cols=71 Identities=21% Similarity=0.025 Sum_probs=61.0
Q ss_pred CCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 016027 68 FDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKE 138 (396)
Q Consensus 68 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 138 (396)
-|.++..++.++.+|...|++++|+..|+++.+.+|+...-..+|..+..+|...|++++|+..+++.++.
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 46778899999999999999999999999999886552111146999999999999999999999999885
No 226
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.43 E-value=0.024 Score=44.23 Aligned_cols=207 Identities=16% Similarity=0.096 Sum_probs=101.3
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHH
Q 016027 34 DTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYN 113 (396)
Q Consensus 34 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 113 (396)
..|.....+|....++++|...+.++.+-. ..+...| ... ..++.|.-+.+++.+.+ .-+..|+
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~y-----Ennrslf-hAA------KayEqaamLake~~kls----Evvdl~e 95 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGY-----ENNRSLF-HAA------KAYEQAAMLAKELSKLS----EVVDLYE 95 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHH-----HhcccHH-HHH------HHHHHHHHHHHHHHHhH----HHHHHHH
Confidence 467778888999999999999999888632 2222222 122 22344444444444431 1234455
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhC--CCCCChh--HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 016027 114 ILLNGWFRSKNVKDAERFWLEMRKE--NVTPNVV--TYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGL 189 (396)
Q Consensus 114 ~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 189 (396)
.....|..+|..+.|-..+++.-+. ++.|+.. .|..-+......++...|.+++. ...+.+
T Consensus 96 KAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~g---------------k~sr~l 160 (308)
T KOG1585|consen 96 KASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYG---------------KCSRVL 160 (308)
T ss_pred HHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHH---------------HhhhHh
Confidence 5555666666666666555554321 2333321 23323333333333333333332 223334
Q ss_pred HHcCCHHHHHHHHHHHHhc----CCCCc-hhhHHHHHHHHHhcCChHHHHHHHHHHHHC---CCCCChhhHHHHHHHHhc
Q 016027 190 VEAGRFEEVSGMMERFLVC----EPGPT-MVTYTSLVKGYCKAGDLEGASKILKMMISR---GFLPSPTTYNYFFRYFSK 261 (396)
Q Consensus 190 ~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~ 261 (396)
.+...+++|-..+.+-... ...++ -..|...+-.+.-..++..|...++.-.+. .-+-+..+...|+.+| .
T Consensus 161 Vrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d 239 (308)
T KOG1585|consen 161 VRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-D 239 (308)
T ss_pred hhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-c
Confidence 4444444443333222110 01111 233445555555666677777777664332 1223455666666665 3
Q ss_pred cCCHHHHHHHH
Q 016027 262 FGKVEDAMNLY 272 (396)
Q Consensus 262 ~~~~~~a~~~~ 272 (396)
.|+.+++.+++
T Consensus 240 ~gD~E~~~kvl 250 (308)
T KOG1585|consen 240 EGDIEEIKKVL 250 (308)
T ss_pred cCCHHHHHHHH
Confidence 46666555544
No 227
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.39 E-value=0.00042 Score=44.67 Aligned_cols=65 Identities=18% Similarity=0.357 Sum_probs=42.1
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCC---CCC-hHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 016027 72 ASLFEILLDSLCKQGRVKAASEYFHKRKELDQSW---APT-VRVYNILLNGWFRSKNVKDAERFWLEMR 136 (396)
Q Consensus 72 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 136 (396)
..+++.++..|...|++++|+..|+++....... .|. ..+++.+..++...|++++|++.+++..
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4567777788888888888888887766441111 122 4556677777777777777777777654
No 228
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.38 E-value=0.065 Score=45.00 Aligned_cols=108 Identities=10% Similarity=0.132 Sum_probs=72.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 016027 216 TYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILC 295 (396)
Q Consensus 216 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 295 (396)
+.+..+.-+...|+...|.++-.+.. .|+...|...+.+++..++|++-.++... .-.+..|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 34444556667777777776655542 35777788888888888888876665432 123466777888888
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 016027 296 KEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFE 343 (396)
Q Consensus 296 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 343 (396)
+.|...+|..++.++. +..-+..|.+.|++.+|.+..-
T Consensus 249 ~~~~~~eA~~yI~k~~----------~~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 249 KYGNKKEASKYIPKIP----------DEERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred HCCCHHHHHHHHHhCC----------hHHHHHHHHHCCCHHHHHHHHH
Confidence 8888888877776621 1445667788888888776643
No 229
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.37 E-value=0.00059 Score=38.12 Aligned_cols=40 Identities=25% Similarity=0.324 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHH
Q 016027 35 TFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILL 79 (396)
Q Consensus 35 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~ 79 (396)
+|..++..|.+.|++++|+++|+++.+.. |.++.++..++
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~-----P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD-----PDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----cCCHHHHHHhh
Confidence 67778888888888888888888888874 77777766654
No 230
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.34 E-value=0.052 Score=42.99 Aligned_cols=82 Identities=11% Similarity=0.025 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHH
Q 016027 74 LFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEG 153 (396)
Q Consensus 74 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 153 (396)
.+..-+..-.+.|++++|.+.|+.+....|.-+-...+.-.++.++.+.++++.|+...++....-+.-...-|...|.+
T Consensus 36 ~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Ylkg 115 (254)
T COG4105 36 ELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKG 115 (254)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHH
Confidence 34445555667888999999998888877776666777777888888888888888888888776333233344444444
Q ss_pred HH
Q 016027 154 YC 155 (396)
Q Consensus 154 ~~ 155 (396)
.+
T Consensus 116 Ls 117 (254)
T COG4105 116 LS 117 (254)
T ss_pred HH
Confidence 43
No 231
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=0.012 Score=49.52 Aligned_cols=110 Identities=13% Similarity=-0.058 Sum_probs=56.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHH
Q 016027 36 FVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNIL 115 (396)
Q Consensus 36 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 115 (396)
...-+..+.+.|++..|...|+++...-.... +. +.++..... . .-..+++.+
T Consensus 211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~-~~----------------~~ee~~~~~-~---------~k~~~~lNl 263 (397)
T KOG0543|consen 211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRR-SF----------------DEEEQKKAE-A---------LKLACHLNL 263 (397)
T ss_pred HHHhhhHHHhhchHHHHHHHHHHHHHHhhccc-cC----------------CHHHHHHHH-H---------HHHHHhhHH
Confidence 34456688889999999999888766421000 00 001111110 0 012244455
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 016027 116 LNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKE 173 (396)
Q Consensus 116 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 173 (396)
+.++.+.+++..|+...++.+..+ ++|...+-.-..++...|+++.|+..|+.+++.
T Consensus 264 A~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 264 AACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 555555555555555555555543 224445444555555555555555555555554
No 232
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.30 E-value=0.053 Score=42.40 Aligned_cols=211 Identities=15% Similarity=0.108 Sum_probs=115.0
Q ss_pred CchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHH
Q 016027 70 SGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGT 149 (396)
Q Consensus 70 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 149 (396)
.-...|.....+|...+++++|...+.++.+- ...+...|.. ...++.|.-+.+++.+. .--...|+-
T Consensus 29 gaas~yekAAvafRnAk~feKakdcLlkA~~~---yEnnrslfhA-------AKayEqaamLake~~kl--sEvvdl~eK 96 (308)
T KOG1585|consen 29 GAASLYEKAAVAFRNAKKFEKAKDCLLKASKG---YENNRSLFHA-------AKAYEQAAMLAKELSKL--SEVVDLYEK 96 (308)
T ss_pred hhHHHHHHHHHHHHhhccHHHHHHHHHHHHHH---HHhcccHHHH-------HHHHHHHHHHHHHHHHh--HHHHHHHHH
Confidence 33556777778888889999999988887742 1122222221 22334444444444432 112234445
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-----CCchhhHHHHHHHH
Q 016027 150 LVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEP-----GPTMVTYTSLVKGY 224 (396)
Q Consensus 150 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~ 224 (396)
....|...|.++.|-..+++.-+. ...-++++|+++|++....-. ..-...+....+.+
T Consensus 97 As~lY~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~l 160 (308)
T KOG1585|consen 97 ASELYVECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVL 160 (308)
T ss_pred HHHHHHHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHh
Confidence 556677777777666666554332 112223334444433322100 01122334444556
Q ss_pred HhcCChHHHHHHHHHHHH----CCCCCC-hhhHHHHHHHHhccCCHHHHHHHHHHHHHCC---CCCChhhHHHHHHHHHh
Q 016027 225 CKAGDLEGASKILKMMIS----RGFLPS-PTTYNYFFRYFSKFGKVEDAMNLYRKMIESG---YTPDRLTYHILLKILCK 296 (396)
Q Consensus 225 ~~~~~~~~a~~~~~~~~~----~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~ 296 (396)
.+...+++|-..+.+-.. -.--++ -..|...|-.+....++..|...++.--+.+ -+-+..+...|+.+|-
T Consensus 161 Vrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd- 239 (308)
T KOG1585|consen 161 VRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD- 239 (308)
T ss_pred hhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-
Confidence 666666665554433221 111122 2346666667778889999999999854432 2335677888888764
Q ss_pred cCCHHHHHHHHHH
Q 016027 297 EDKLDLAIQVSKE 309 (396)
Q Consensus 297 ~~~~~~a~~~~~~ 309 (396)
.|+.+++..++..
T Consensus 240 ~gD~E~~~kvl~s 252 (308)
T KOG1585|consen 240 EGDIEEIKKVLSS 252 (308)
T ss_pred cCCHHHHHHHHcC
Confidence 5888888777653
No 233
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.29 E-value=0.077 Score=43.95 Aligned_cols=131 Identities=12% Similarity=0.079 Sum_probs=69.0
Q ss_pred hhhccCchhHHHHHHHHhCCC--CCCCCC--ChhHHHHHHHHHHHcC-CHHHHHHHHHHHhhc----ccccCCCCc----
Q 016027 5 LAKAKEFDSAWCLLLDKIGGH--EVPDFV--SKDTFVILIRRYARAG-MVEAAIWTFEFANNL----DMVKNFDSG---- 71 (396)
Q Consensus 5 ~~~~g~~~~A~~~~~~~~~~~--~~p~~~--~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~----~~~~~~~~~---- 71 (396)
..++|+++.|..++.++-... ..|+.. -...++.++......+ +++.|..+++++.+. .......++
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 457888889988887765432 133311 0124555666666777 888888888777665 111111111
Q ss_pred -hhHHHHHHHHHHHcCChH---HHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 016027 72 -ASLFEILLDSLCKQGRVK---AASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKE 138 (396)
Q Consensus 72 -~~~~~~l~~~~~~~~~~~---~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 138 (396)
..++..++.+|...+..+ +|..+++.+.... .-...++..-+..+.+.++.+.+.+.+.+|+..
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~---~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEY---GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC---CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 233445555555555433 3334444443321 112334444445555566666666666666654
No 234
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.25 E-value=0.055 Score=41.51 Aligned_cols=66 Identities=21% Similarity=0.077 Sum_probs=32.0
Q ss_pred CCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 016027 69 DSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRK 137 (396)
Q Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 137 (396)
|.-+.+|+.++--+...|+++.|.+.|+...+.+|+ ...+...-.-.+.-.|+++-|.+-+...-+
T Consensus 96 P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~---y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ 161 (297)
T COG4785 96 PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT---YNYAHLNRGIALYYGGRYKLAQDDLLAFYQ 161 (297)
T ss_pred CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCc---chHHHhccceeeeecCchHhhHHHHHHHHh
Confidence 445555666666666666666666666666555433 111111111222334555555555444443
No 235
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.25 E-value=0.019 Score=41.08 Aligned_cols=85 Identities=9% Similarity=0.023 Sum_probs=63.5
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHH
Q 016027 72 ASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLV 151 (396)
Q Consensus 72 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 151 (396)
+..+..-+....+.|++++|.+.|+.+...-|..+-...+.-.++.++.+.+++++|...+++.++..+.-...-|...+
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~ 89 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM 89 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 34455566677788999999999999988877666667778889999999999999999999998875443334455555
Q ss_pred HHHHc
Q 016027 152 EGYCR 156 (396)
Q Consensus 152 ~~~~~ 156 (396)
.+++.
T Consensus 90 ~gL~~ 94 (142)
T PF13512_consen 90 RGLSY 94 (142)
T ss_pred HHHHH
Confidence 55443
No 236
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.23 E-value=0.017 Score=40.17 Aligned_cols=97 Identities=19% Similarity=0.056 Sum_probs=73.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCC-ChHHHHHHH
Q 016027 38 ILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAP-TVRVYNILL 116 (396)
Q Consensus 38 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~~l~ 116 (396)
.-+.++...|+.+.|++.|.+++..- |..+.+|+.-..++.-+|+.++|++=++++.+...+... --..|..-.
T Consensus 48 l~~valaE~g~Ld~AlE~F~qal~l~-----P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg 122 (175)
T KOG4555|consen 48 LKAIALAEAGDLDGALELFGQALCLA-----PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRG 122 (175)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhc-----ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHH
Confidence 44567788999999999999998874 888899999999999999999999999998887433111 112344445
Q ss_pred HHHHhcCChhHHHHHHHHHHhCC
Q 016027 117 NGWFRSKNVKDAERFWLEMRKEN 139 (396)
Q Consensus 117 ~~~~~~~~~~~a~~~~~~~~~~~ 139 (396)
..|-..|+-+.|..-|+..-+.|
T Consensus 123 ~lyRl~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 123 LLYRLLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhCchHHHHHhHHHHHHhC
Confidence 56677888888888888777665
No 237
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.18 E-value=0.11 Score=43.64 Aligned_cols=282 Identities=16% Similarity=0.146 Sum_probs=153.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHH
Q 016027 35 TFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNI 114 (396)
Q Consensus 35 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 114 (396)
+|..++......|+.+-|..+++. .|.+ ..-+..+.+.|+.+.| +.++.+. + .|| -+|..
T Consensus 2 S~a~IA~~A~~~GR~~LA~~LL~~----------Ep~~---~~qVplLL~m~e~e~A---L~kAi~S--g-D~D-Li~~v 61 (319)
T PF04840_consen 2 SYAEIARKAYEEGRPKLATKLLEL----------EPRA---SKQVPLLLKMGEDELA---LNKAIES--G-DTD-LIYLV 61 (319)
T ss_pred CHHHHHHHHHHcChHHHHHHHHHc----------CCCh---HHHHHHHhcCCchHHH---HHHHHHc--C-Ccc-HHHHH
Confidence 367788888999999999888772 2222 2335566677887777 3444443 2 223 24555
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 016027 115 LLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGR 194 (396)
Q Consensus 115 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 194 (396)
++..--+.. .. +++ .++.. .|.. ..+...|++..+.+.-..+|..- + .........+-.++. ..+
T Consensus 62 Ll~L~~~l~-~s---~f~-~il~~--~p~a---~~l~~~~~r~~~~~~L~~~y~q~---d-~~~~~a~~~l~~~~~-~~~ 126 (319)
T PF04840_consen 62 LLHLKRKLS-LS---QFF-KILNQ--NPVA---SNLYKKYCREQDRELLKDFYYQE---D-RFQELANLHLQEALS-QKD 126 (319)
T ss_pred HHHHHHhCC-HH---HHH-HHHHh--Ccch---HHHHHHHHHhccHHHHHHHHHhc---c-hHHHHHHHHHHHHHh-CCC
Confidence 554332222 11 233 33332 2222 23444566655655544444321 1 001111111112222 234
Q ss_pred HHHHHHHHHHHHhcCCC-CchhhHHHHHHHHHhcCChHHHHHHHHH---HHH-CCCCCChhhHHHHHHHHhccCCHHHHH
Q 016027 195 FEEVSGMMERFLVCEPG-PTMVTYTSLVKGYCKAGDLEGASKILKM---MIS-RGFLPSPTTYNYFFRYFSKFGKVEDAM 269 (396)
Q Consensus 195 ~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~---~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~ 269 (396)
.+.-...+..+.+.--. .+......++ ++-.++++. +.. .+......+.+..+.-+...|+...|.
T Consensus 127 ~~~~~~~L~~a~~~y~~~k~~~f~~~~~---------e~q~~Ll~~Q~~Le~~~~~~f~~~Sl~~Ti~~li~~~~~k~A~ 197 (319)
T PF04840_consen 127 VEEKISFLKQAQKLYSKSKNDAFEAKLI---------EEQIKLLEYQKELEEKYNTNFVGLSLNDTIRKLIEMGQEKQAE 197 (319)
T ss_pred hHHHHHHHHHHHHHHHhcchhHHHHHHH---------HHHHHHHHHHHHHHHHhccchhcCCHHHHHHHHHHCCCHHHHH
Confidence 33333333333221000 1111111111 111122211 111 111122335556677777889988888
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 016027 270 NLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRG 349 (396)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 349 (396)
++-.+. . .|+...|..-+.+++..++|++-..+... . -++.-|..++.+|.+.|+..+|..+..++
T Consensus 198 kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~~~~~~~eA~~yI~k~---- 263 (319)
T PF04840_consen 198 KLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACLKYGNKKEASKYIPKI---- 263 (319)
T ss_pred HHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHHHCCCHHHHHHHHHhC----
Confidence 886655 2 46889999999999999999988876432 1 25688999999999999999999887762
Q ss_pred CCCCHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 016027 350 LVPHYLTFKRLNDEFKKRGMTALAQKLCNVM 380 (396)
Q Consensus 350 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 380 (396)
+ +..-+..|.+.|++.+|.+..-+.
T Consensus 264 -~-----~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 264 -P-----DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred -C-----hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 2 244556778888888887664443
No 238
>PRK11906 transcriptional regulator; Provisional
Probab=97.14 E-value=0.046 Score=47.31 Aligned_cols=147 Identities=10% Similarity=0.028 Sum_probs=93.0
Q ss_pred CHHHHHHHHHHHh---hcccccCCCCchhHHHHHHHHHHHc---------CChHHHHHHHHHHhhccCCCCCChHHHHHH
Q 016027 48 MVEAAIWTFEFAN---NLDMVKNFDSGASLFEILLDSLCKQ---------GRVKAASEYFHKRKELDQSWAPTVRVYNIL 115 (396)
Q Consensus 48 ~~~~A~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 115 (396)
..+.|+.+|.++. ..+ |.....|..+..++... .+..+|.+.-+++.+.++. |......+
T Consensus 273 ~~~~Al~lf~ra~~~~~ld-----p~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~---Da~a~~~~ 344 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQ-----TLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV---DGKILAIM 344 (458)
T ss_pred HHHHHHHHHHHHhhcccCC-----cccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC---CHHHHHHH
Confidence 4457888899998 443 55566676666655443 2345677777777777655 77777777
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCC
Q 016027 116 LNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEG-IEPNAIVYNTVIDGLVEAGR 194 (396)
Q Consensus 116 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~ 194 (396)
..+..-.++++.|...|++....++. ...+|........-.|+.++|.+.+++..+.. ...........+..|+..+
T Consensus 345 g~~~~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~- 422 (458)
T PRK11906 345 GLITGLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP- 422 (458)
T ss_pred HHHHHhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-
Confidence 77777777788888888888776433 45566666666667788888888888866552 1111222333344444433
Q ss_pred HHHHHHHHHH
Q 016027 195 FEEVSGMMER 204 (396)
Q Consensus 195 ~~~a~~~~~~ 204 (396)
.+.|+++|-+
T Consensus 423 ~~~~~~~~~~ 432 (458)
T PRK11906 423 LKNNIKLYYK 432 (458)
T ss_pred hhhhHHHHhh
Confidence 5556665543
No 239
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.14 E-value=0.17 Score=45.08 Aligned_cols=124 Identities=10% Similarity=0.080 Sum_probs=75.5
Q ss_pred ChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 016027 248 SPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIH 327 (396)
Q Consensus 248 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 327 (396)
+..+|...+..-...|+++.+.-+|++..-- +..-...|-..+......|+.+-|..++....+-..+-.+.+.-.-..
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 4456777777778888888888888776542 122334455555555556888888877777766544423333222233
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHHcCCchHHH
Q 016027 328 LLCRMYKFDEASAEFEDMIRRGLVPHYLT-FKRLNDEFKKRGMTALAQ 374 (396)
Q Consensus 328 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~ 374 (396)
..-..|++..|..+++.+.+.- |+..- -..-+....+.|+.+.+.
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhh
Confidence 3344678888888888887742 54322 223334455677777766
No 240
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.07 E-value=0.02 Score=40.52 Aligned_cols=52 Identities=10% Similarity=-0.150 Sum_probs=43.2
Q ss_pred CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH-CCCCCCHHHHHHHHHHHH
Q 016027 314 GCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIR-RGLVPHYLTFKRLNDEFK 365 (396)
Q Consensus 314 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~p~~~~~~~l~~~~~ 365 (396)
...|+..+..+++.+|+..|++..|+++++.+.+ .+++.+..+|..|++-+.
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 3468889999999999999999999999998876 567777888999888543
No 241
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.01 E-value=0.0034 Score=35.00 Aligned_cols=41 Identities=15% Similarity=0.237 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHH
Q 016027 73 SLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILL 116 (396)
Q Consensus 73 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~ 116 (396)
.++..+...|...|++++|.++|+++.+.+|+ |...+..+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~---~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPD---DPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC---CHHHHHHhh
Confidence 45777888888888888888888888887655 566665543
No 242
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.00 E-value=0.13 Score=41.74 Aligned_cols=145 Identities=17% Similarity=0.192 Sum_probs=77.7
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 016027 118 GWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEE 197 (396)
Q Consensus 118 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 197 (396)
.....|++.+|..+|+........ +......++.+|...|+.+.|..++..+...--.........-+..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 345566777777777666655333 4455566667777777777777776665443211112222233444444444444
Q ss_pred HHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCChhhHHHHHHHHhccCCHH
Q 016027 198 VSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISR--GFLPSPTTYNYFFRYFSKFGKVE 266 (396)
Q Consensus 198 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~ 266 (396)
...+-.++-.. + .|...-..+...+...|+.+.|.+.+-.+.+. +.. |...-..++..+.-.|.-+
T Consensus 222 ~~~l~~~~aad-P-dd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g~~D 289 (304)
T COG3118 222 IQDLQRRLAAD-P-DDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFGPAD 289 (304)
T ss_pred HHHHHHHHHhC-C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcCCCC
Confidence 43433333321 2 25555566666677777777777666655544 222 4455556666665555333
No 243
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.98 E-value=0.16 Score=42.03 Aligned_cols=162 Identities=12% Similarity=0.041 Sum_probs=84.8
Q ss_pred hhHHHHHHHHHhcCChH---HHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 016027 215 VTYTSLVKGYCKAGDLE---GASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILL 291 (396)
Q Consensus 215 ~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 291 (396)
.+...++.+|...+..+ +|..+++.+.... +-.+..+..-+..+.+.++.+++.+.+.+|...- ......+...+
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l 162 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHH
Confidence 35566777777776644 4555666665442 2234555566677777788888888888887762 21233444444
Q ss_pred HHH---HhcCCHHHHHHHHHHHHHcCCCCChh-hHHH-HHHH---HHhcCC------hhHHHHHHHHHHH-CCCCCCHHH
Q 016027 292 KIL---CKEDKLDLAIQVSKEMKCRGCDIDLD-TSTM-LIHL---LCRMYK------FDEASAEFEDMIR-RGLVPHYLT 356 (396)
Q Consensus 292 ~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~-l~~~---~~~~~~------~~~a~~~~~~~~~-~~~~p~~~~ 356 (396)
..+ .. .....+...+..+....+.|... .... ++.. ....++ .+....+++...+ .+.+.+..+
T Consensus 163 ~~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~ 241 (278)
T PF08631_consen 163 HHIKQLAE-KSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEA 241 (278)
T ss_pred HHHHHHHh-hCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 433 33 23345666666655444444443 1111 1111 112212 3334444443332 233334433
Q ss_pred HHHH-------HHHHHHcCCchHHHHHHHH
Q 016027 357 FKRL-------NDEFKKRGMTALAQKLCNV 379 (396)
Q Consensus 357 ~~~l-------~~~~~~~g~~~~A~~~~~~ 379 (396)
-.++ ...+.+.+++++|.++|+-
T Consensus 242 ~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~ 271 (278)
T PF08631_consen 242 ASAIHTLLWNKGKKHYKAKNYDEAIEWYEL 271 (278)
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 3322 2245678999999999985
No 244
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.97 E-value=0.07 Score=47.76 Aligned_cols=165 Identities=13% Similarity=0.059 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCch-----hHHHHHHHHHHH----cCChHHHHHHHHHHhhccCCC
Q 016027 35 TFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGA-----SLFEILLDSLCK----QGRVKAASEYFHKRKELDQSW 105 (396)
Q Consensus 35 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~ 105 (396)
.+..++....-.|+-+.+++.+.+..+...+ .... -.|+..+..++. ....+.|.+++..+...-
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i---~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y--- 263 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENI---RSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY--- 263 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCc---chHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC---
Confidence 5777888888888888888888888775422 2111 123344443333 456778888888887753
Q ss_pred CCChHHHH-HHHHHHHhcCChhHHHHHHHHHHhCC---CCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHH
Q 016027 106 APTVRVYN-ILLNGWFRSKNVKDAERFWLEMRKEN---VTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIV 181 (396)
Q Consensus 106 ~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 181 (396)
|+...|. .-.+.+...|++++|++.|++..... .+.....+--++-++.-..+|++|...+..+.+.. .-+..+
T Consensus 264 -P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~ 341 (468)
T PF10300_consen 264 -PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAF 341 (468)
T ss_pred -CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHH
Confidence 3444443 44566677888888888888655321 12233445556677778888888888888888764 333444
Q ss_pred HHHHH-HHHHHcCCH-------HHHHHHHHHHHh
Q 016027 182 YNTVI-DGLVEAGRF-------EEVSGMMERFLV 207 (396)
Q Consensus 182 ~~~l~-~~~~~~~~~-------~~a~~~~~~~~~ 207 (396)
|.-+. .++...|+. ++|..+|.++..
T Consensus 342 Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 342 YAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 44333 344556666 788888877654
No 245
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.95 E-value=0.019 Score=39.97 Aligned_cols=93 Identities=19% Similarity=0.086 Sum_probs=75.1
Q ss_pred hhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHH
Q 016027 4 VLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLC 83 (396)
Q Consensus 4 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 83 (396)
++...|+++.|++.|.+.+.. -|.. ..+|+.-++++.-+|+.++|++-++++.+..... ...-...|..-+..|.
T Consensus 52 alaE~g~Ld~AlE~F~qal~l--~P~r--aSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyR 126 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL--APER--ASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYR 126 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh--cccc--hHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHH
Confidence 456789999999999999874 4442 4599999999999999999999999999875221 2233455667778888
Q ss_pred HcCChHHHHHHHHHHhhc
Q 016027 84 KQGRVKAASEYFHKRKEL 101 (396)
Q Consensus 84 ~~~~~~~A~~~~~~~~~~ 101 (396)
..|+.+.|..=|+.+.+.
T Consensus 127 l~g~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 127 LLGNDDAARADFEAAAQL 144 (175)
T ss_pred HhCchHHHHHhHHHHHHh
Confidence 999999999999998877
No 246
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.93 E-value=0.22 Score=42.81 Aligned_cols=223 Identities=16% Similarity=0.153 Sum_probs=123.7
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHH
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVY 112 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 112 (396)
++.|..-...+...++-++|++..++.... .+.....+...|.-.++-++....|++..+. ...-
T Consensus 302 ~evw~dys~Y~~~isd~q~al~tv~rg~~~--------spsL~~~lse~yel~nd~e~v~~~fdk~~q~-------L~r~ 366 (660)
T COG5107 302 EEVWFDYSEYLIGISDKQKALKTVERGIEM--------SPSLTMFLSEYYELVNDEEAVYGCFDKCTQD-------LKRK 366 (660)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHhcccC--------CCchheeHHHHHhhcccHHHHhhhHHHHHHH-------HHHH
Confidence 556776667777777777777776655443 2223344555555555666555566554431 1111
Q ss_pred HHHHHHHHh---cCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHH
Q 016027 113 NILLNGWFR---SKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEG-IEPNAIVYNTVIDG 188 (396)
Q Consensus 113 ~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~ 188 (396)
...+.+-+. .|+++...+++-+-+. .-..+|..+++...+..-++.|..+|-++.+.| +.++..++++++..
T Consensus 367 ys~~~s~~~s~~D~N~e~~~Ell~kr~~----k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~ 442 (660)
T COG5107 367 YSMGESESASKVDNNFEYSKELLLKRIN----KLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEY 442 (660)
T ss_pred HhhhhhhhhccccCCccccHHHHHHHHh----hhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHH
Confidence 111111111 2233222222211111 134456666676667777777777777777776 45666666777764
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCchhh-HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHhccCCH
Q 016027 189 LVEAGRFEEVSGMMERFLVCEPGPTMVT-YTSLVKGYCKAGDLEGASKILKMMISRGFLPS--PTTYNYFFRYFSKFGKV 265 (396)
Q Consensus 189 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~ 265 (396)
+ ..|+..-|.++|+.-+... ||... -.-.+..+...++-+.|..+|+....+ +..+ ...|..++..-..-|+.
T Consensus 443 ~-~~~d~~ta~~ifelGl~~f--~d~~~y~~kyl~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~l 518 (660)
T COG5107 443 Y-ATGDRATAYNIFELGLLKF--PDSTLYKEKYLLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSL 518 (660)
T ss_pred H-hcCCcchHHHHHHHHHHhC--CCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcch
Confidence 4 3566777777777665542 23222 234455666677777777777755443 1212 45677777777777777
Q ss_pred HHHHHHHHHHHHC
Q 016027 266 EDAMNLYRKMIES 278 (396)
Q Consensus 266 ~~a~~~~~~~~~~ 278 (396)
..+..+=+.+.+.
T Consensus 519 N~v~sLe~rf~e~ 531 (660)
T COG5107 519 NNVYSLEERFREL 531 (660)
T ss_pred HHHHhHHHHHHHH
Confidence 7766666666553
No 247
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.87 E-value=0.042 Score=38.90 Aligned_cols=29 Identities=10% Similarity=0.139 Sum_probs=17.5
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANN 61 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 61 (396)
..++..++.++++.|+.+....+++..-.
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~Wg 30 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWG 30 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcC
Confidence 34556666666666666666666655443
No 248
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.81 E-value=0.16 Score=45.51 Aligned_cols=179 Identities=13% Similarity=0.105 Sum_probs=121.8
Q ss_pred HHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCCh-----HHHHHHHHHHHh----cC
Q 016027 53 IWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTV-----RVYNILLNGWFR----SK 123 (396)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~----~~ 123 (396)
.-+|+-+... +||. +..++....=.|+-+.+++.+....+. .++.-.. -.|+..+..+.. ..
T Consensus 177 ~G~f~L~lSl-----LPp~---~~kll~~vGF~gdR~~GL~~L~~~~~~-~~i~~~la~L~LL~y~~~~~~~~~~~~~~~ 247 (468)
T PF10300_consen 177 FGLFNLVLSL-----LPPK---VLKLLSFVGFSGDRELGLRLLWEASKS-ENIRSPLAALVLLWYHLVVPSFLGIDGEDV 247 (468)
T ss_pred HHHHHHHHHh-----CCHH---HHHHHhhcCcCCcHHHHHHHHHHHhcc-CCcchHHHHHHHHHHHHHHHHHcCCcccCC
Confidence 4455555554 2543 566777777789999999999988774 4544322 234444444333 45
Q ss_pred ChhHHHHHHHHHHhCCCCCChhHHH-HHHHHHHccCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHHcCCHHHHH
Q 016027 124 NVKDAERFWLEMRKENVTPNVVTYG-TLVEGYCRLRRVDRAIRLVKEMRKEG---IEPNAIVYNTVIDGLVEAGRFEEVS 199 (396)
Q Consensus 124 ~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~ 199 (396)
+.+.|.++++.+.++ -|+...|. .-.+.+...|++++|++.++...... .+.....+--+...+.-..+|++|.
T Consensus 248 ~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 248 PLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 788999999999987 34555544 45677888999999999999766421 1223344555667788899999999
Q ss_pred HHHHHHHhcCCCCchhhHHHHHH-HHHhcCCh-------HHHHHHHHHHHHC
Q 016027 200 GMMERFLVCEPGPTMVTYTSLVK-GYCKAGDL-------EGASKILKMMISR 243 (396)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~-------~~a~~~~~~~~~~ 243 (396)
..|..+.+... .+...|.-+.. ++...++. ++|.++|.++...
T Consensus 326 ~~f~~L~~~s~-WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 326 EYFLRLLKESK-WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHHHhccc-cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 99999988643 34555554433 44556777 8899999887643
No 249
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.79 E-value=0.069 Score=43.86 Aligned_cols=118 Identities=8% Similarity=-0.082 Sum_probs=50.6
Q ss_pred ccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCC
Q 016027 8 AKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGR 87 (396)
Q Consensus 8 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 87 (396)
+|++.+|...+++.++. .|. +.-++...=.++..+|+.+.-...++++... --.++|-...+...+.-++..+|-
T Consensus 116 ~g~~h~a~~~wdklL~d--~Pt--Dlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD--YPT--DLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred cccccHHHHHHHHHHHh--Cch--hhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhcc
Confidence 34444444444444442 222 1334444444445555555555444444432 001223223333333444444555
Q ss_pred hHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHH
Q 016027 88 VKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWL 133 (396)
Q Consensus 88 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 133 (396)
+++|.+.-++..+.++. |...-.+....+-..+++.++.+...
T Consensus 191 y~dAEk~A~ralqiN~~---D~Wa~Ha~aHVlem~~r~Keg~eFM~ 233 (491)
T KOG2610|consen 191 YDDAEKQADRALQINRF---DCWASHAKAHVLEMNGRHKEGKEFMY 233 (491)
T ss_pred chhHHHHHHhhccCCCc---chHHHHHHHHHHHhcchhhhHHHHHH
Confidence 55555555555444332 33334444444444455555544443
No 250
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.79 E-value=0.03 Score=46.39 Aligned_cols=95 Identities=12% Similarity=0.002 Sum_probs=38.8
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCC---ChHHHHHHHHHHHhcCChhHHHHHHHHHHhCC-----CCCCh
Q 016027 73 SLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAP---TVRVYNILLNGWFRSKNVKDAERFWLEMRKEN-----VTPNV 144 (396)
Q Consensus 73 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~ 144 (396)
.+|..+.+++.+.-++.+++.+-..-... |+..| -......+..++.-.+.++++++.|+...+-. .....
T Consensus 84 ea~lnlar~~e~l~~f~kt~~y~k~~l~l-pgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LEl 162 (518)
T KOG1941|consen 84 EAYLNLARSNEKLCEFHKTISYCKTCLGL-PGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLEL 162 (518)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcC-CCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeee
Confidence 34445555555555555554444433332 22222 01122223344444444555555554443210 01112
Q ss_pred hHHHHHHHHHHccCCHHHHHHHHH
Q 016027 145 VTYGTLVEGYCRLRRVDRAIRLVK 168 (396)
Q Consensus 145 ~~~~~l~~~~~~~~~~~~a~~~~~ 168 (396)
..+..|...|....|+++|.-+..
T Consensus 163 qvcv~Lgslf~~l~D~~Kal~f~~ 186 (518)
T KOG1941|consen 163 QVCVSLGSLFAQLKDYEKALFFPC 186 (518)
T ss_pred ehhhhHHHHHHHHHhhhHHhhhhH
Confidence 244445555555555555444433
No 251
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.76 E-value=0.22 Score=40.36 Aligned_cols=147 Identities=11% Similarity=0.039 Sum_probs=79.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHH
Q 016027 38 ILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLN 117 (396)
Q Consensus 38 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~ 117 (396)
.-.......|++.+|...|..+.... +.+..+...++.+|...|+.+.|..++..+...... ........-+.
T Consensus 139 ~~~~~~~~~e~~~~a~~~~~~al~~~-----~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~--~~~~~l~a~i~ 211 (304)
T COG3118 139 AEAKELIEAEDFGEAAPLLKQALQAA-----PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQD--KAAHGLQAQIE 211 (304)
T ss_pred HHhhhhhhccchhhHHHHHHHHHHhC-----cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchh--hHHHHHHHHHH
Confidence 34445667777777777777777664 555666677777777777777777777765543111 11111122334
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcC
Q 016027 118 GWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEG-IEPNAIVYNTVIDGLVEAG 193 (396)
Q Consensus 118 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~ 193 (396)
.+.+.....+...+-...-.. +-|...-..+...+...|+.+.|.+.+-.+.+.+ -..|...-..++..+...|
T Consensus 212 ll~qaa~~~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 212 LLEQAAATPEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHhcCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 444444444444444433322 1145555556666666677776666555554432 1223344445555554444
No 252
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.74 E-value=0.39 Score=42.91 Aligned_cols=327 Identities=10% Similarity=0.035 Sum_probs=180.5
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHH
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVY 112 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 112 (396)
...|..++.---.....+.+...++.+... .|.--..|...+..-.+.|..+.+.++|++... +++.+...|
T Consensus 45 f~~wt~li~~~~~~~~~~~~r~~y~~fL~k-----yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~---aip~SvdlW 116 (577)
T KOG1258|consen 45 FDAWTTLIQENDSIEDVDALREVYDIFLSK-----YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ---AIPLSVDLW 116 (577)
T ss_pred ccchHHHHhccCchhHHHHHHHHHHHHHhh-----CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH---hhhhHHHHH
Confidence 346666666544555556666666666653 355555677777777788999999999999887 555677777
Q ss_pred HHHHHHHH-hcCChhHHHHHHHHHHhC-CCC-CChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 016027 113 NILLNGWF-RSKNVKDAERFWLEMRKE-NVT-PNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGL 189 (396)
Q Consensus 113 ~~l~~~~~-~~~~~~~a~~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 189 (396)
......+. ..|+.+...+.|+..+.. |.. .+...|...+..-...+++.....+|+++++.. ...++....-|
T Consensus 117 ~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP----~~~~~~~f~~f 192 (577)
T KOG1258|consen 117 LSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIP----LHQLNRHFDRF 192 (577)
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhh----hhHhHHHHHHH
Confidence 76665444 357778888888887764 322 245567777877777888899999999888652 22222222222
Q ss_pred H---Hc------CCHHHHHHHHHHHHhc----CCCCchhhHHHHHHHHHh-cCChHHHHHHHHHHHHCCCCCChhhHHHH
Q 016027 190 V---EA------GRFEEVSGMMERFLVC----EPGPTMVTYTSLVKGYCK-AGDLEGASKILKMMISRGFLPSPTTYNYF 255 (396)
Q Consensus 190 ~---~~------~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 255 (396)
. .. ...+++.++-...... ...........-+.--.. .+..+.+....... ...-
T Consensus 193 ~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~-----------~~~~ 261 (577)
T KOG1258|consen 193 KQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRI-----------VSIH 261 (577)
T ss_pred HHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHH-----------HHHH
Confidence 1 11 1223333222222110 000000111111000000 00011111111110 0111
Q ss_pred HHHHhccCCHHHHHHHHHHHHHC---CC----CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 016027 256 FRYFSKFGKVEDAMNLYRKMIES---GY----TPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHL 328 (396)
Q Consensus 256 ~~~~~~~~~~~~a~~~~~~~~~~---~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 328 (396)
-.++.....+.+....++.-.+. .+ .++..+|...+..-...|+.+.+.-++++..-. +..=...|-..+.-
T Consensus 262 ~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~ 340 (577)
T KOG1258|consen 262 EKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARW 340 (577)
T ss_pred HHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHH
Confidence 11222222333333334433332 11 224567888888888999999999999987632 12234556666666
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHHcCCchHHHHHHHHHhccc
Q 016027 329 LCRMYKFDEASAEFEDMIRRGLVPHYLTFKRLN-DEFKKRGMTALAQKLCNVMSSVP 384 (396)
Q Consensus 329 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~~ 384 (396)
....|+.+-|..++....+--.+ +......+- ...-..|+++.|..+++.+.+.-
T Consensus 341 m~~~~~~~~~~~~~~~~~~i~~k-~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~ 396 (577)
T KOG1258|consen 341 MESSGDVSLANNVLARACKIHVK-KTPIIHLLEARFEESNGNFDDAKVILQRIESEY 396 (577)
T ss_pred HHHcCchhHHHHHHHhhhhhcCC-CCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC
Confidence 66679999888888777663322 222222222 23345789999999999987755
No 253
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.73 E-value=0.33 Score=41.87 Aligned_cols=347 Identities=14% Similarity=0.112 Sum_probs=174.7
Q ss_pred hhhccCchhHHHHHHHHhCC--CCCCCCCChhH---------HHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchh
Q 016027 5 LAKAKEFDSAWCLLLDKIGG--HEVPDFVSKDT---------FVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGAS 73 (396)
Q Consensus 5 ~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~---------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 73 (396)
..+.+.+..|.+.+...-.. +..|...+... =...+.++...|++.++..+++++...-......-+..
T Consensus 89 ~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d 168 (549)
T PF07079_consen 89 AYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSD 168 (549)
T ss_pred HHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHH
Confidence 34678889988887665543 12222111111 12457788999999999999999988643323346777
Q ss_pred HHHHHHHHHHHcC--------C-------hHHHHHHHHHHhhccC----CCCCChHHHHHHHHHHHhc--CChhHHHHHH
Q 016027 74 LFEILLDSLCKQG--------R-------VKAASEYFHKRKELDQ----SWAPTVRVYNILLNGWFRS--KNVKDAERFW 132 (396)
Q Consensus 74 ~~~~l~~~~~~~~--------~-------~~~A~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~ 132 (396)
+|+.++-.+.+.= . ++-+.-+..++...+. .+.|.......++....-. .+..--.+++
T Consensus 169 ~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l 248 (549)
T PF07079_consen 169 MYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQIL 248 (549)
T ss_pred HHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHH
Confidence 8887555554321 1 1112222222222211 1222222222222222211 1122222233
Q ss_pred HHHHhCCCCCChhH-HHHHHHHHHccCCHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 016027 133 LEMRKENVTPNVVT-YGTLVEGYCRLRRVDRAIRLVKEMRKEGIE----PNAIVYNTVIDGLVEAGRFEEVSGMMERFLV 207 (396)
Q Consensus 133 ~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 207 (396)
+.....-+.|+-.. ...+...+.. +.+++..+.+.+....+. .=..+|..++....+.++...|.+.+.-+..
T Consensus 249 ~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ 326 (549)
T PF07079_consen 249 ENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKI 326 (549)
T ss_pred HHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 33322333444322 2233333333 444444444444332111 1133455666666666666666666655544
Q ss_pred cCCCC-------------------chhhHH------------------------HHHH---HHHhcCC-hHHHHHHHHHH
Q 016027 208 CEPGP-------------------TMVTYT------------------------SLVK---GYCKAGD-LEGASKILKMM 240 (396)
Q Consensus 208 ~~~~~-------------------~~~~~~------------------------~l~~---~~~~~~~-~~~a~~~~~~~ 240 (396)
..+.. |...++ .|+. -+=+.|. -++|..+++.+
T Consensus 327 ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~i 406 (549)
T PF07079_consen 327 LDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLI 406 (549)
T ss_pred cCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 32211 111111 1111 1112233 56677777777
Q ss_pred HHCCCCCChhhHHHHHH----HHh---ccCCHHHHHHHHHHHHHCCCCCCh----hhHHHHHH--HHHhcCCHHHHHHHH
Q 016027 241 ISRGFLPSPTTYNYFFR----YFS---KFGKVEDAMNLYRKMIESGYTPDR----LTYHILLK--ILCKEDKLDLAIQVS 307 (396)
Q Consensus 241 ~~~~~~~~~~~~~~l~~----~~~---~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~--~~~~~~~~~~a~~~~ 307 (396)
.+-. +-|...-|.+.. +|. .......-..+-+-+.+.|+.|-. ..-|.|.. .+...|++.++.-.-
T Consensus 407 l~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys 485 (549)
T PF07079_consen 407 LQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYS 485 (549)
T ss_pred HHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 6642 223333332221 121 122333444444444556766533 33444443 345679999987766
Q ss_pred HHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 016027 308 KEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKRLN 361 (396)
Q Consensus 308 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 361 (396)
..+.+ +.|++.+|..++-++....++++|..++..+ +|+..++++-+
T Consensus 486 ~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~~dskv 532 (549)
T PF07079_consen 486 SWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERMRDSKV 532 (549)
T ss_pred HHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhhHHHHH
Confidence 66655 4779999999999999999999999999765 67777766543
No 254
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.65 E-value=0.1 Score=46.08 Aligned_cols=161 Identities=14% Similarity=0.071 Sum_probs=86.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHH
Q 016027 39 LIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNG 118 (396)
Q Consensus 39 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~ 118 (396)
..+...-.|+++++.++...-.-. +.+| ......++.-+.+.|..+.|+.+.+. .. .-...
T Consensus 267 ~fk~av~~~d~~~v~~~i~~~~ll---~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D-----------~~---~rFeL 327 (443)
T PF04053_consen 267 EFKTAVLRGDFEEVLRMIAASNLL---PNIP--KDQGQSIARFLEKKGYPELALQFVTD-----------PD---HRFEL 327 (443)
T ss_dssp HHHHHHHTT-HHH-----HHHHTG---GG----HHHHHHHHHHHHHTT-HHHHHHHSS------------HH---HHHHH
T ss_pred HHHHHHHcCChhhhhhhhhhhhhc---ccCC--hhHHHHHHHHHHHCCCHHHHHhhcCC-----------hH---HHhHH
Confidence 445556677777766665422111 1223 33466677777777777777765432 21 22334
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 016027 119 WFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEV 198 (396)
Q Consensus 119 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 198 (396)
..+.|+++.|.++.++. .+...|..|.......|+++-|.+.|.+..+ +..++-.|...|+.+.-
T Consensus 328 Al~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L 392 (443)
T PF04053_consen 328 ALQLGNLDIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKL 392 (443)
T ss_dssp HHHCT-HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHH
T ss_pred HHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHH
Confidence 55677777777664332 2666777777777777777777777765432 34555566677777766
Q ss_pred HHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHH
Q 016027 199 SGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKM 239 (396)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 239 (396)
.++.+.....|- ++....++.-.|+.+++.+++..
T Consensus 393 ~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 393 SKLAKIAEERGD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 666666655432 33444445556676666666544
No 255
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.64 E-value=0.16 Score=44.96 Aligned_cols=165 Identities=18% Similarity=0.133 Sum_probs=96.2
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHH
Q 016027 188 GLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVED 267 (396)
Q Consensus 188 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 267 (396)
...-.++++++.++...-.-. +..+....+.++..+.+.|.++.|+++.. |+.+ -.....+.|+.+.
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll-~~i~~~~~~~i~~fL~~~G~~e~AL~~~~---------D~~~---rFeLAl~lg~L~~ 336 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLL-PNIPKDQGQSIARFLEKKGYPELALQFVT---------DPDH---RFELALQLGNLDI 336 (443)
T ss_dssp HHHHTT-HHH-----HHHHTG-GG--HHHHHHHHHHHHHTT-HHHHHHHSS----------HHH---HHHHHHHCT-HHH
T ss_pred HHHHcCChhhhhhhhhhhhhc-ccCChhHHHHHHHHHHHCCCHHHHHhhcC---------ChHH---HhHHHHhcCCHHH
Confidence 344567777766666421111 11124456777777778888888877643 2222 2334456688888
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 016027 268 AMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIR 347 (396)
Q Consensus 268 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 347 (396)
|.++.++ ..+...|..|.......|+++-|.+.|++..+ +..|+-.|...|+.+...++.+....
T Consensus 337 A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 337 ALEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp HHHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHH
Confidence 7775533 23667888888888888888888888877653 45566667777887777777777666
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhccchh
Q 016027 348 RGLVPHYLTFKRLNDEFKKRGMTALAQKLCNVMSSVPRS 386 (396)
Q Consensus 348 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 386 (396)
.| -++....++.-.|+.++..+++.+-.+.|..
T Consensus 402 ~~------~~n~af~~~~~lgd~~~cv~lL~~~~~~~~A 434 (443)
T PF04053_consen 402 RG------DINIAFQAALLLGDVEECVDLLIETGRLPEA 434 (443)
T ss_dssp TT-------HHHHHHHHHHHT-HHHHHHHHHHTT-HHHH
T ss_pred cc------CHHHHHHHHHHcCCHHHHHHHHHHcCCchHH
Confidence 55 2455555666678888887777776555544
No 256
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.64 E-value=0.26 Score=39.46 Aligned_cols=225 Identities=20% Similarity=0.132 Sum_probs=136.1
Q ss_pred cCCHHHHHHHHHHHhhcccccCCCC--chhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcC
Q 016027 46 AGMVEAAIWTFEFANNLDMVKNFDS--GASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSK 123 (396)
Q Consensus 46 ~g~~~~A~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 123 (396)
.+....+...+....... +. ....+......+...+++..+...+...... .........+......+...+
T Consensus 36 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 109 (291)
T COG0457 36 LGELAEALELLEEALELL-----PNSDLAGLLLLLALALLKLGRLEEALELLEKALEL-ELLPNLAEALLNLGLLLEALG 109 (291)
T ss_pred HhhHHHHHHHHHHHHhcC-----ccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHHHh
Confidence 456666666666666652 21 2455666777777777777777777766541 011224555666666666677
Q ss_pred ChhHHHHHHHHHHhCCCCCChhHHHHHHH-HHHccCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHcCCHHHHHH
Q 016027 124 NVKDAERFWLEMRKENVTPNVVTYGTLVE-GYCRLRRVDRAIRLVKEMRKEGI--EPNAIVYNTVIDGLVEAGRFEEVSG 200 (396)
Q Consensus 124 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~ 200 (396)
++..+...+.........+ ......... .+...|+++.+...+........ ......+......+...++.+.+..
T Consensus 110 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 188 (291)
T COG0457 110 KYEEALELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALE 188 (291)
T ss_pred hHHHHHHHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHH
Confidence 7777777777776643332 122222222 56677777777777777755211 1223333444444666778888888
Q ss_pred HHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 016027 201 MMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIES 278 (396)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 278 (396)
.+..............+..+...+...++++.+...+......... ....+..+...+...+..+.+...+......
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 189 LLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8887776533213566777777777777888888888877775322 2334444444444666688888888777765
No 257
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.56 E-value=0.029 Score=44.82 Aligned_cols=91 Identities=11% Similarity=0.141 Sum_probs=69.5
Q ss_pred CCCCChHHHHHHHHHHHh-----cCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccC----------------CHHH
Q 016027 104 SWAPTVRVYNILLNGWFR-----SKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLR----------------RVDR 162 (396)
Q Consensus 104 ~~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------------~~~~ 162 (396)
+-+.|..+|...+..+.. .+.++-....++.|.+-|+.-|..+|+.|++.+-+.. +-+-
T Consensus 62 ~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C 141 (406)
T KOG3941|consen 62 PEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNC 141 (406)
T ss_pred cccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhH
Confidence 334577777777776654 3567777778889999999999999999998865432 3345
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 016027 163 AIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGR 194 (396)
Q Consensus 163 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 194 (396)
+++++++|...|+-||..+-..+++++.+.+-
T Consensus 142 ~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 142 AIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 77888888888888888888888888877665
No 258
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.54 E-value=0.11 Score=46.61 Aligned_cols=203 Identities=13% Similarity=0.132 Sum_probs=103.0
Q ss_pred HHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHH
Q 016027 19 LDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKR 98 (396)
Q Consensus 19 ~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 98 (396)
+++.+.+..|+ -..++..++-.|++.+|-++|.+.-..+.....-.|...| -.++-+...|..++-..+.++-
T Consensus 624 ~~~k~rge~P~------~iLlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMF-D~aQE~~~~g~~~eKKmL~RKR 696 (1081)
T KOG1538|consen 624 EERKKRGETPN------DLLLADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMF-DYAQEFLGSGDPKEKKMLIRKR 696 (1081)
T ss_pred HHHHhcCCCch------HHHHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHH-HHHHHHhhcCChHHHHHHHHHH
Confidence 44444444565 2246777888889999888888665432111111111111 1334444455554444444432
Q ss_pred hhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHH------HHhCCCC---CChhHHHHHHHHHHccCCHHHHHHHHHH
Q 016027 99 KELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLE------MRKENVT---PNVVTYGTLVEGYCRLRRVDRAIRLVKE 169 (396)
Q Consensus 99 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~------~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 169 (396)
..... ++.-=...+..+...|+.++|..+.-+ +.+-+-+ .+..+...+...+.+...+.-|-++|..
T Consensus 697 A~WAr----~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k 772 (1081)
T KOG1538|consen 697 ADWAR----NIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLK 772 (1081)
T ss_pred HHHhh----hcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHH
Confidence 22111 111112344555667777777665421 1111111 1233444444444555556666666665
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch-----------hhHHHHHHHHHhcCChHHHHHHHH
Q 016027 170 MRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTM-----------VTYTSLVKGYCKAGDLEGASKILK 238 (396)
Q Consensus 170 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----------~~~~~l~~~~~~~~~~~~a~~~~~ 238 (396)
|-+. ..++......++|++|..+-++.-+. .++. .-|...-.+|.+.|+-.+|..+++
T Consensus 773 ~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLe 841 (1081)
T KOG1538|consen 773 MGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLE 841 (1081)
T ss_pred hccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHH
Confidence 5322 34556667778888888877765432 1221 112333456677777777777777
Q ss_pred HHHHC
Q 016027 239 MMISR 243 (396)
Q Consensus 239 ~~~~~ 243 (396)
++...
T Consensus 842 QLtnn 846 (1081)
T KOG1538|consen 842 QLTNN 846 (1081)
T ss_pred Hhhhh
Confidence 76654
No 259
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.54 E-value=0.2 Score=37.04 Aligned_cols=123 Identities=10% Similarity=0.027 Sum_probs=52.3
Q ss_pred HcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChh-HHH--HHHHHHHccCCH
Q 016027 84 KQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVV-TYG--TLVEGYCRLRRV 160 (396)
Q Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~--~l~~~~~~~~~~ 160 (396)
+.+..++|+.-|..+.+.+.+--|. ...........+.|+...|...|++.-.....|-.. -.. --.-.+...|.+
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~Ypv-LA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPV-LARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchH-HHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 4444555555555555443332221 112223333444555555555555554432222211 000 111123344555
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 016027 161 DRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLV 207 (396)
Q Consensus 161 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 207 (396)
+......+.+...+-+.-...-..|.-+-.+.|++.+|.+.|..+..
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 55555554444433222233333444445555555555555555544
No 260
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.45 E-value=0.15 Score=42.04 Aligned_cols=116 Identities=10% Similarity=-0.054 Sum_probs=46.3
Q ss_pred cCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhc-cCCCCCChHHHHHHHHHHHhcCC
Q 016027 46 AGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKEL-DQSWAPTVRVYNILLNGWFRSKN 124 (396)
Q Consensus 46 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~ 124 (396)
.|++.+|-..++++.+. +|.|.-++...=.+|...|+...-...++++... +++.+-...+-.....++...|-
T Consensus 116 ~g~~h~a~~~wdklL~d-----~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-----YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred cccccHHHHHHHHHHHh-----CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhcc
Confidence 34444444444444442 3444444444444444444444444444444322 11111111111222233344455
Q ss_pred hhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHH
Q 016027 125 VKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLV 167 (396)
Q Consensus 125 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 167 (396)
+++|++.-++..+.+. -|..+-.+....+--.|+..++.++.
T Consensus 191 y~dAEk~A~ralqiN~-~D~Wa~Ha~aHVlem~~r~Keg~eFM 232 (491)
T KOG2610|consen 191 YDDAEKQADRALQINR-FDCWASHAKAHVLEMNGRHKEGKEFM 232 (491)
T ss_pred chhHHHHHHhhccCCC-cchHHHHHHHHHHHhcchhhhHHHHH
Confidence 5555554444444321 13333333444444444444444443
No 261
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.41 E-value=0.0039 Score=32.37 Aligned_cols=32 Identities=22% Similarity=0.281 Sum_probs=21.6
Q ss_pred HHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHH
Q 016027 56 FEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAAS 92 (396)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 92 (396)
|+++++.+ |.++.+|+.++..|...|++++|+
T Consensus 2 y~kAie~~-----P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELN-----PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHC-----CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 44555554 677777777777777777777764
No 262
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.40 E-value=0.6 Score=40.98 Aligned_cols=150 Identities=16% Similarity=0.250 Sum_probs=76.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHH
Q 016027 38 ILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLN 117 (396)
Q Consensus 38 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~ 117 (396)
.++...-+..+.+.-++.-.++.+.. |..+.+|..|..- ......+|.++++++.+... ..+. .
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~-----pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE------~~lg---~ 236 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEIN-----PDCADAYILLAEE--EASTIVEAEELLRQAVKAGE------ASLG---K 236 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhh-----hhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHH------Hhhc---h
Confidence 44555556667777777777777763 4344444444332 34457788888888765411 1111 0
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCCHH
Q 016027 118 GWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIE-PNAIVYNTVIDGLVEAGRFE 196 (396)
Q Consensus 118 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~ 196 (396)
.... +..-..++.+..+...|-..+-..+..++.+.|+.++|++.+++|.+.... ....+...|+.++...+.+.
T Consensus 237 s~~~----~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Ya 312 (539)
T PF04184_consen 237 SQFL----QHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYA 312 (539)
T ss_pred hhhh----hcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHH
Confidence 0000 000011111222222222333344566666667777777777766654211 12334556666677777777
Q ss_pred HHHHHHHHHHh
Q 016027 197 EVSGMMERFLV 207 (396)
Q Consensus 197 ~a~~~~~~~~~ 207 (396)
++..++.+..+
T Consensus 313 d~q~lL~kYdD 323 (539)
T PF04184_consen 313 DVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHhcc
Confidence 77766666543
No 263
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.29 E-value=0.91 Score=41.89 Aligned_cols=313 Identities=10% Similarity=0.080 Sum_probs=168.0
Q ss_pred hhhhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCH--HHHHHHHHHHhhcccccCCCCchhHHHHHH
Q 016027 2 IKVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMV--EAAIWTFEFANNLDMVKNFDSGASLFEILL 79 (396)
Q Consensus 2 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~--~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~ 79 (396)
|+-+...+.|..|+++..- +.. |.......|...+..+.+..+. +++++.+++=.... . .....|..++
T Consensus 444 i~Rl~~r~~Y~vaIQva~~-l~~---p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~----~-~~~iSy~~iA 514 (829)
T KOG2280|consen 444 IDRLVDRHLYSVAIQVAKL-LNL---PESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK----L-TPGISYAAIA 514 (829)
T ss_pred hHHHHhcchhHHHHHHHHH-hCC---ccccccHHHHHHHHHHHhccCccchHHHHHHHHHhccc----C-CCceeHHHHH
Confidence 4455667788888887433 331 2211134566666666666322 22332222222211 1 2223366777
Q ss_pred HHHHHcCChHHHHHHHHHHhhccCCCCC---ChHHHHHHHHHHHhcCChhHHHHHHHHHHhCC-----------CCCChh
Q 016027 80 DSLCKQGRVKAASEYFHKRKELDQSWAP---TVRVYNILLNGWFRSKNVKDAERFWLEMRKEN-----------VTPNVV 145 (396)
Q Consensus 80 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----------~~~~~~ 145 (396)
.-...+|+++-|..+++.=.... ...| +..-+...+.-+.+.|+.+-...++-.+...- .+....
T Consensus 515 ~~Ay~~GR~~LA~kLle~E~~~~-~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~ 593 (829)
T KOG2280|consen 515 RRAYQEGRFELARKLLELEPRSG-EQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALS 593 (829)
T ss_pred HHHHhcCcHHHHHHHHhcCCCcc-chhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhH
Confidence 77778888888888777533321 1111 22334555666677777777776666554421 011111
Q ss_pred HHHHHHH--------HHHccCCHHHHHHHH--HHHHHcC-CCCCHHHHHHHHHHHHHcCCHH---HH-------HHHHHH
Q 016027 146 TYGTLVE--------GYCRLRRVDRAIRLV--KEMRKEG-IEPNAIVYNTVIDGLVEAGRFE---EV-------SGMMER 204 (396)
Q Consensus 146 ~~~~l~~--------~~~~~~~~~~a~~~~--~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~---~a-------~~~~~~ 204 (396)
.|.-+++ .+...++-.++..-+ +...... +.+-..........+.+..... +| +++.+.
T Consensus 594 lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~ 673 (829)
T KOG2280|consen 594 LYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRT 673 (829)
T ss_pred HHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 1111111 011111111221111 1100000 1111112233334444443311 11 122222
Q ss_pred HHh-cCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC
Q 016027 205 FLV-CEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPD 283 (396)
Q Consensus 205 ~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 283 (396)
+.. .+.....-+.+--+..+...|+-.+|.++-.+.. -||...|..-+.+++..++|++-+++-+... .
T Consensus 674 Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------s 743 (829)
T KOG2280|consen 674 LEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------S 743 (829)
T ss_pred HHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------C
Confidence 221 1222333445555667778899999988876654 4688899999999999999998777655432 2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 016027 284 RLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFE 343 (396)
Q Consensus 284 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 343 (396)
+..|.-++.+|.+.|+.++|.+++.+.... . -...+|.+.|++.+|.++--
T Consensus 744 PIGy~PFVe~c~~~~n~~EA~KYiprv~~l-----~----ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 744 PIGYLPFVEACLKQGNKDEAKKYIPRVGGL-----Q----EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred CCCchhHHHHHHhcccHHHHhhhhhccCCh-----H----HHHHHHHHhccHHHHHHHHH
Confidence 567888899999999999999988766422 1 56788999999999887643
No 264
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.22 E-value=0.6 Score=39.12 Aligned_cols=234 Identities=10% Similarity=0.026 Sum_probs=133.1
Q ss_pred HHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHH----HHHhhccCCCCCChHHHHHHH
Q 016027 41 RRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYF----HKRKELDQSWAPTVRVYNILL 116 (396)
Q Consensus 41 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~----~~~~~~~~~~~~~~~~~~~l~ 116 (396)
.-+....+.++|+..+.+....-. +....-.++..+..+....|.+++++..- +-+...+ ....-...|..+.
T Consensus 14 ~~Ly~s~~~~~al~~w~~~L~~l~--~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~-ds~~~~ea~lnla 90 (518)
T KOG1941|consen 14 LQLYQSNQTEKALQVWTKVLEKLS--DLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELE-DSDFLLEAYLNLA 90 (518)
T ss_pred HhHhcCchHHHHHHHHHHHHHHHH--HHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 344566677777777666554310 11222334556677777778777765432 2222211 0001123455666
Q ss_pred HHHHhcCChhHHHHHHHHHHhC-CCCCC---hhHHHHHHHHHHccCCHHHHHHHHHHHHHcC-----CCCCHHHHHHHHH
Q 016027 117 NGWFRSKNVKDAERFWLEMRKE-NVTPN---VVTYGTLVEGYCRLRRVDRAIRLVKEMRKEG-----IEPNAIVYNTVID 187 (396)
Q Consensus 117 ~~~~~~~~~~~a~~~~~~~~~~-~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~ 187 (396)
.++-+.-++.+++.+-+.-... |..|. -....++..++...+.++++++.|+...+-. ......++..+..
T Consensus 91 r~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgs 170 (518)
T KOG1941|consen 91 RSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGS 170 (518)
T ss_pred HHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHH
Confidence 6666666777777665544332 22221 1234456777777888888988888876531 1123456788888
Q ss_pred HHHHcCCHHHHHHHHHHHHhc----CCCCchh-----hHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-ChhhHH
Q 016027 188 GLVEAGRFEEVSGMMERFLVC----EPGPTMV-----TYTSLVKGYCKAGDLEGASKILKMMISR----GFLP-SPTTYN 253 (396)
Q Consensus 188 ~~~~~~~~~~a~~~~~~~~~~----~~~~~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~ 253 (396)
.|.+..++++|.-+..+..+. +...-.. ....|.-++...|..-.|.+.-++..+. |-.+ ......
T Consensus 171 lf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~ 250 (518)
T KOG1941|consen 171 LFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLL 250 (518)
T ss_pred HHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHH
Confidence 889999998888776665442 2211111 1223444666677777777766665443 3111 123345
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHH
Q 016027 254 YFFRYFSKFGKVEDAMNLYRKMIE 277 (396)
Q Consensus 254 ~l~~~~~~~~~~~~a~~~~~~~~~ 277 (396)
.+.+.|...|+.+.|+.-|++...
T Consensus 251 ~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 251 CFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHhcccHhHHHHHHHHHHH
Confidence 566778888888888887776543
No 265
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.16 E-value=0.04 Score=41.63 Aligned_cols=101 Identities=13% Similarity=0.049 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHH
Q 016027 35 TFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNI 114 (396)
Q Consensus 35 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 114 (396)
.+..-+.-+...|++++|..-|..++..-+..........|..-+.++.+.+.++.|+.-..++++++|. .......
T Consensus 97 ~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt---y~kAl~R 173 (271)
T KOG4234|consen 97 SLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT---YEKALER 173 (271)
T ss_pred HHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch---hHHHHHH
Confidence 4555566667777777777777777776322211223345566666777777777777777777777554 4444555
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhC
Q 016027 115 LLNGWFRSKNVKDAERFWLEMRKE 138 (396)
Q Consensus 115 l~~~~~~~~~~~~a~~~~~~~~~~ 138 (396)
-+.+|-+...+++|+.=|+++.+.
T Consensus 174 RAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 174 RAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHh
Confidence 566777777777777777777765
No 266
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.14 E-value=0.52 Score=37.61 Aligned_cols=223 Identities=17% Similarity=0.142 Sum_probs=119.6
Q ss_pred CChhHHHHHHHHHHhCCCC-CChhHHHHHHHHHHccCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 016027 123 KNVKDAERFWLEMRKENVT-PNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKE-GIEPNAIVYNTVIDGLVEAGRFEEVSG 200 (396)
Q Consensus 123 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~ 200 (396)
+....+...+......... .....+......+...+.+..+...+...... ........+......+...+++..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 4555555655555544222 12455666666667777777777776666542 223444555566666666677777777
Q ss_pred HHHHHHhcCCCCchhhHHHHHH-HHHhcCChHHHHHHHHHHHHCCC--CCChhhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 016027 201 MMERFLVCEPGPTMVTYTSLVK-GYCKAGDLEGASKILKMMISRGF--LPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIE 277 (396)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 277 (396)
.+.........+ ......... .+...|+++.|...+........ ......+......+...++.+.+...+.....
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 777766643332 122222222 56667777777777777644211 01222333333334555666666666666665
Q ss_pred CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 016027 278 SGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIR 347 (396)
Q Consensus 278 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 347 (396)
.........+..+...+...++.+.+...+......... ....+..+...+...+..+++...+.+...
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 196 LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 421112445555555666666666666666666654221 123333333333345556666666666555
No 267
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.11 E-value=0.36 Score=35.50 Aligned_cols=62 Identities=13% Similarity=-0.061 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhc
Q 016027 35 TFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKEL 101 (396)
Q Consensus 35 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 101 (396)
.+..++..-.+.++.+++..++.-+.... |..+.+-..-+..+...|+|.+|..+|+.+...
T Consensus 12 gLie~~~~al~~~~~~D~e~lL~ALrvLR-----P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 12 GLIEVLSVALRLGDPDDAEALLDALRVLR-----PEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhC-----CCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 44455555566677777777777776664 555555555566666777777777777776554
No 268
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=96.06 E-value=1.4 Score=41.73 Aligned_cols=226 Identities=15% Similarity=0.052 Sum_probs=120.5
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCC----CCchhhHHHHH
Q 016027 154 YCRLRRVDRAIRLVKEMRKEGIEPNA-------IVYNTVI-DGLVEAGRFEEVSGMMERFLVCEP----GPTMVTYTSLV 221 (396)
Q Consensus 154 ~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~l~ 221 (396)
.....++.+|..++.++...-..|+. ..++.+- ......|+++.|.++.+.....-+ .+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 34567888888888887664222221 1222222 223457888998888877766422 23455667777
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCChhhH---HHHH--HHHhccCCH--HHHHHHHHHHHHCC---CC---CChhhHH
Q 016027 222 KGYCKAGDLEGASKILKMMISRGFLPSPTTY---NYFF--RYFSKFGKV--EDAMNLYRKMIESG---YT---PDRLTYH 288 (396)
Q Consensus 222 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~--~~~~~~~~~--~~a~~~~~~~~~~~---~~---~~~~~~~ 288 (396)
.+..-.|++++|..+..+..+..-.-+...+ ..+. ..+...|+. .+.+..+....... .+ +-..+..
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 8888889999999888776654222233322 2222 234455632 23333333332221 01 1123344
Q ss_pred HHHHHHHhc-CCHHHHHHHHHHHHHcCCCCChhhH--HHHHHHHHhcCChhHHHHHHHHHHHCC----CCCCHHHHHHHH
Q 016027 289 ILLKILCKE-DKLDLAIQVSKEMKCRGCDIDLDTS--TMLIHLLCRMYKFDEASAEFEDMIRRG----LVPHYLTFKRLN 361 (396)
Q Consensus 289 ~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~p~~~~~~~l~ 361 (396)
.+..++.+. +...++..-+.-.......|-.... ..|+......|++++|...++++.... ..++..+-...+
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v 664 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKV 664 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHh
Confidence 444444441 1222222222222222222222222 267778888999999999988887632 233333333444
Q ss_pred HHH--HHcCCchHHHHHHHH
Q 016027 362 DEF--KKRGMTALAQKLCNV 379 (396)
Q Consensus 362 ~~~--~~~g~~~~A~~~~~~ 379 (396)
... ...|+..++.....+
T Consensus 665 ~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 665 KLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hHHHhcccCCHHHHHHHHHh
Confidence 432 457888887777666
No 269
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.02 E-value=0.98 Score=39.74 Aligned_cols=58 Identities=17% Similarity=0.123 Sum_probs=30.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCC-CChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 016027 289 ILLKILCKEDKLDLAIQVSKEMKCRGCD-IDLDTSTMLIHLLCRMYKFDEASAEFEDMI 346 (396)
Q Consensus 289 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 346 (396)
.+..++-+.|+.++|.+.++++.+..+. -+..+...|+.++...+.+.++..++.+.-
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 3444455556666666666665543221 123344555666666666666666655553
No 270
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.97 E-value=1.4 Score=41.25 Aligned_cols=116 Identities=15% Similarity=0.155 Sum_probs=62.5
Q ss_pred hhhhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHH
Q 016027 2 IKVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDS 81 (396)
Q Consensus 2 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 81 (396)
|+.+.+..-++-|+.+... .+..++.. .......+.-+.+.|++++|.+.|-+.+..- .|. .++.-
T Consensus 341 L~iL~kK~ly~~Ai~LAk~---~~~d~d~~-~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l-----e~s-----~Vi~k 406 (933)
T KOG2114|consen 341 LDILFKKNLYKVAINLAKS---QHLDEDTL-AEIHRKYGDYLYGKGDFDEATDQYIETIGFL-----EPS-----EVIKK 406 (933)
T ss_pred HHHHHHhhhHHHHHHHHHh---cCCCHHHH-HHHHHHHHHHHHhcCCHHHHHHHHHHHcccC-----ChH-----HHHHH
Confidence 3455666677777765332 22233321 3445555666667788888877776665531 211 23344
Q ss_pred HHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHH
Q 016027 82 LCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLE 134 (396)
Q Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 134 (396)
+....+..+-..+++.+.+. + -.+...-..|+.+|.+.++.++..+..+.
T Consensus 407 fLdaq~IknLt~YLe~L~~~--g-la~~dhttlLLncYiKlkd~~kL~efI~~ 456 (933)
T KOG2114|consen 407 FLDAQRIKNLTSYLEALHKK--G-LANSDHTTLLLNCYIKLKDVEKLTEFISK 456 (933)
T ss_pred hcCHHHHHHHHHHHHHHHHc--c-cccchhHHHHHHHHHHhcchHHHHHHHhc
Confidence 44444555555555555553 2 12444556667777776666655555443
No 271
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.90 E-value=0.02 Score=30.15 Aligned_cols=27 Identities=33% Similarity=0.236 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 016027 35 TFVILIRRYARAGMVEAAIWTFEFANN 61 (396)
Q Consensus 35 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 61 (396)
+|..|+.+|.+.|++++|+++|+++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 356677777777777777777776443
No 272
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.70 E-value=0.53 Score=34.26 Aligned_cols=84 Identities=13% Similarity=0.165 Sum_probs=38.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 016027 219 SLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKED 298 (396)
Q Consensus 219 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 298 (396)
.++..+...+.+......++.+...+. .+...++.++..|++.+ ..+....+.. . .+.......++.|.+.+
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~---~---~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN---K---SNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh---c---cccCCHHHHHHHHHHcC
Confidence 344444444555555555555554442 34445555555555432 2233333321 1 12223333455555555
Q ss_pred CHHHHHHHHHHH
Q 016027 299 KLDLAIQVSKEM 310 (396)
Q Consensus 299 ~~~~a~~~~~~~ 310 (396)
.++++..++.++
T Consensus 84 l~~~~~~l~~k~ 95 (140)
T smart00299 84 LYEEAVELYKKD 95 (140)
T ss_pred cHHHHHHHHHhh
Confidence 555555555444
No 273
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.64 E-value=0.21 Score=40.67 Aligned_cols=79 Identities=16% Similarity=0.196 Sum_probs=53.6
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHH-----cCCCCCHHHHH
Q 016027 109 VRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRK-----EGIEPNAIVYN 183 (396)
Q Consensus 109 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 183 (396)
..++..++..+...|+++.+...++++.... +-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 3456667777777777777777777777664 33667777777777777777777777776655 36677666666
Q ss_pred HHHHH
Q 016027 184 TVIDG 188 (396)
Q Consensus 184 ~l~~~ 188 (396)
.....
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 55555
No 274
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.60 E-value=0.041 Score=28.29 Aligned_cols=28 Identities=36% Similarity=0.328 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 016027 35 TFVILIRRYARAGMVEAAIWTFEFANNL 62 (396)
Q Consensus 35 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 62 (396)
+|..++.++...|++++|++.|+++.+.
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 5666666777777777777777766665
No 275
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=95.58 E-value=0.042 Score=28.33 Aligned_cols=28 Identities=25% Similarity=0.237 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 016027 35 TFVILIRRYARAGMVEAAIWTFEFANNL 62 (396)
Q Consensus 35 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 62 (396)
+|..++.++...|++++|+..|+++++.
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 3444444444444444444444444443
No 276
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.58 E-value=0.51 Score=33.23 Aligned_cols=61 Identities=11% Similarity=0.155 Sum_probs=24.8
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 016027 148 GTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCE 209 (396)
Q Consensus 148 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 209 (396)
...+......|.-+.-.+++..+.+.+ .+++.....+..+|.+.|+..++.+++.++-+.|
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 333444444444444444444444322 3444444444444555555555555444444444
No 277
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=95.57 E-value=0.12 Score=39.69 Aligned_cols=80 Identities=16% Similarity=0.081 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHH
Q 016027 35 TFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNI 114 (396)
Q Consensus 35 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 114 (396)
+....+..+.+.+.+++|+...+.-.+.. |.+...-..+...++-.|+|++|..-++-+-...+...+-...|..
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-----Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~ 77 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-----PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRH 77 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-----CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHH
Confidence 35556777888899999999888777764 7888888889999999999999999998888887777777788888
Q ss_pred HHHHH
Q 016027 115 LLNGW 119 (396)
Q Consensus 115 l~~~~ 119 (396)
++.+-
T Consensus 78 lir~e 82 (273)
T COG4455 78 LIRCE 82 (273)
T ss_pred HHHHH
Confidence 87653
No 278
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.55 E-value=0.22 Score=40.56 Aligned_cols=80 Identities=20% Similarity=0.218 Sum_probs=67.5
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHh-----CCCCCChhH
Q 016027 72 ASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRK-----ENVTPNVVT 146 (396)
Q Consensus 72 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~ 146 (396)
..++..++..+...|+++.+.+.++.+...+|- +...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~---~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~ 229 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPY---DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPEL 229 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc---chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHH
Confidence 446778888999999999999999999988765 777899999999999999999999988765 488888888
Q ss_pred HHHHHHHH
Q 016027 147 YGTLVEGY 154 (396)
Q Consensus 147 ~~~l~~~~ 154 (396)
........
T Consensus 230 ~~~y~~~~ 237 (280)
T COG3629 230 RALYEEIL 237 (280)
T ss_pred HHHHHHHh
Confidence 87777763
No 279
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.50 E-value=0.64 Score=33.83 Aligned_cols=84 Identities=19% Similarity=0.157 Sum_probs=42.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccC
Q 016027 184 TVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFG 263 (396)
Q Consensus 184 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 263 (396)
.++..+...+.......+++.+...+. .+....+.++..|++.+ .......+.. ..+......+++.|.+.+
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcC
Confidence 344445555556666666666555543 34555566666665442 2233333331 112333444555666666
Q ss_pred CHHHHHHHHHHH
Q 016027 264 KVEDAMNLYRKM 275 (396)
Q Consensus 264 ~~~~a~~~~~~~ 275 (396)
.++++.-++.++
T Consensus 84 l~~~~~~l~~k~ 95 (140)
T smart00299 84 LYEEAVELYKKD 95 (140)
T ss_pred cHHHHHHHHHhh
Confidence 666666655543
No 280
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.50 E-value=0.27 Score=37.40 Aligned_cols=97 Identities=7% Similarity=0.042 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--hhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-
Q 016027 110 RVYNILLNGWFRSKNVKDAERFWLEMRKENVTPN--VVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVI- 186 (396)
Q Consensus 110 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~- 186 (396)
..+..++..|.+.|+.+.|.+.|.++......+. ...+-.+++.....+++..+...+.+....--.........-+
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 3455666666677777777777766665432222 2344556666666666666666665554431111111111111
Q ss_pred ----HHHHHcCCHHHHHHHHHHHH
Q 016027 187 ----DGLVEAGRFEEVSGMMERFL 206 (396)
Q Consensus 187 ----~~~~~~~~~~~a~~~~~~~~ 206 (396)
-.+...+++..|-+.|-...
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 11234566777666665543
No 281
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=95.48 E-value=0.041 Score=28.38 Aligned_cols=32 Identities=25% Similarity=0.393 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHhhccCC
Q 016027 73 SLFEILLDSLCKQGRVKAASEYFHKRKELDQS 104 (396)
Q Consensus 73 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 104 (396)
.+|..++.++...|++++|+..|+++.+.+|.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 57889999999999999999999999988764
No 282
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=95.47 E-value=0.025 Score=29.30 Aligned_cols=32 Identities=25% Similarity=0.407 Sum_probs=23.4
Q ss_pred HHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHH
Q 016027 95 FHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAE 129 (396)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 129 (396)
|+++++.+|. +..+|+.+...+...|++++|+
T Consensus 2 y~kAie~~P~---n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPN---NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCC---CHHHHHHHHHHHHHCcCHHhhc
Confidence 4556666555 7778888888888888888775
No 283
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.46 E-value=0.049 Score=28.00 Aligned_cols=31 Identities=32% Similarity=0.423 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHhhccC
Q 016027 73 SLFEILLDSLCKQGRVKAASEYFHKRKELDQ 103 (396)
Q Consensus 73 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 103 (396)
.++..++..+...|++++|++.|+++...+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 4577788888888888888888888877644
No 284
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.36 E-value=0.21 Score=37.92 Aligned_cols=94 Identities=15% Similarity=0.116 Sum_probs=74.8
Q ss_pred HHHHHHcCChHHHHHHHHHHhhccCCCCC--ChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHc
Q 016027 79 LDSLCKQGRVKAASEYFHKRKELDQSWAP--TVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCR 156 (396)
Q Consensus 79 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 156 (396)
+.-+.+.|++++|.+-|..+...-|.... -...|..-..++.+.+.++.|+.-..+.++.++. ...+...-..+|-+
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek 180 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEK 180 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHh
Confidence 45566889999999999998887765432 2345666777889999999999999999987644 55566666778889
Q ss_pred cCCHHHHHHHHHHHHHc
Q 016027 157 LRRVDRAIRLVKEMRKE 173 (396)
Q Consensus 157 ~~~~~~a~~~~~~~~~~ 173 (396)
...+++|+.=|..+.+.
T Consensus 181 ~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILES 197 (271)
T ss_pred hhhHHHHHHHHHHHHHh
Confidence 99999999999999887
No 285
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.34 E-value=0.81 Score=34.03 Aligned_cols=138 Identities=14% Similarity=0.073 Sum_probs=86.4
Q ss_pred ChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChh-HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHH-
Q 016027 108 TVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVV-TYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTV- 185 (396)
Q Consensus 108 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l- 185 (396)
+...|...+. +.+.+..++|+.-|..+.+.|...-+. ............|+...|...|+++-.....|-..--..-
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARl 136 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARL 136 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHH
Confidence 3445555444 456677888888888888776542222 2233445566778888888888888765333322211111
Q ss_pred --HHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 016027 186 --IDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFL 246 (396)
Q Consensus 186 --~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 246 (396)
.-.+...|.+++.....+.+...+.+.-...-..|..+-.+.|++..|.+.|..+......
T Consensus 137 raa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~a 199 (221)
T COG4649 137 RAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQA 199 (221)
T ss_pred HHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccC
Confidence 1235667888888877777765544444555667777777888888888888888765333
No 286
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.32 E-value=0.73 Score=33.34 Aligned_cols=61 Identities=11% Similarity=-0.066 Sum_probs=40.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhc
Q 016027 36 FVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKEL 101 (396)
Q Consensus 36 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 101 (396)
+..++..-...++++++..+++.+.-.. |..+.+-..-+..+...|+|.+|..+|+.....
T Consensus 13 Li~~~~~aL~~~d~~D~e~lLdALrvLr-----P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 13 LIEVLMYALRSADPYDAQAMLDALRVLR-----PNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhC-----CCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 3344444455777777777777777664 555555555666677777888888887777654
No 287
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.27 E-value=0.31 Score=37.09 Aligned_cols=63 Identities=14% Similarity=0.177 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 016027 74 LFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMR 136 (396)
Q Consensus 74 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 136 (396)
.+..++..|.+.|+.+.|.+.|.++.....+...-...+-.++......+++..+.....+..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 345556666666666666666666554422222334445555555556666666655555543
No 288
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.23 E-value=3.4 Score=40.59 Aligned_cols=83 Identities=13% Similarity=0.064 Sum_probs=43.1
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh--hHHHHHHHHH
Q 016027 253 NYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLD--TSTMLIHLLC 330 (396)
Q Consensus 253 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~ 330 (396)
.+....+.....+++|.-.|+..-+. ...+.+|..+|+|.+|+.+..++... -+.. +-..|+.-+.
T Consensus 943 ~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~ 1010 (1265)
T KOG1920|consen 943 EAYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLV 1010 (1265)
T ss_pred HHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHH
Confidence 33334444555555555555443211 12345566666666666666655421 1211 1245666666
Q ss_pred hcCChhHHHHHHHHHHH
Q 016027 331 RMYKFDEASAEFEDMIR 347 (396)
Q Consensus 331 ~~~~~~~a~~~~~~~~~ 347 (396)
..+++-+|-++..+...
T Consensus 1011 e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 1011 EQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred HcccchhHHHHHHHHhc
Confidence 67777777666665543
No 289
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=95.19 E-value=0.24 Score=37.04 Aligned_cols=109 Identities=20% Similarity=0.178 Sum_probs=61.5
Q ss_pred chhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCH----------HHHHHHHHHHhhcccccCCCCchhHHHHHHH
Q 016027 11 FDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMV----------EAAIWTFEFANNLDMVKNFDSGASLFEILLD 80 (396)
Q Consensus 11 ~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 80 (396)
|+.|.+.++..... .|. +.+.++.-+.++....++ ++|+.-|++++..+ |....++..++.
T Consensus 7 FE~ark~aea~y~~--nP~--DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~-----P~~hdAlw~lGn 77 (186)
T PF06552_consen 7 FEHARKKAEAAYAK--NPL--DADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKIN-----PNKHDALWCLGN 77 (186)
T ss_dssp HHHHHHHHHHHHHH---TT---HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH------TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CcH--hHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcC-----CchHHHHHHHHH
Confidence 56677777666553 344 366666666665554333 44555566666664 777788888888
Q ss_pred HHHHcCC-----------hHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 016027 81 SLCKQGR-----------VKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKE 138 (396)
Q Consensus 81 ~~~~~~~-----------~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 138 (396)
+|...+. +++|.+.|+++... .|+...|+.-+.... +|-++..++.+.
T Consensus 78 A~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~----~P~ne~Y~ksLe~~~------kap~lh~e~~~~ 136 (186)
T PF06552_consen 78 AYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE----DPNNELYRKSLEMAA------KAPELHMEIHKQ 136 (186)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-----TT-HHHHHHHHHHH------THHHHHHHHHHS
T ss_pred HHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc----CCCcHHHHHHHHHHH------hhHHHHHHHHHH
Confidence 8876542 45555555555544 356666766665542 345555555444
No 290
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.15 E-value=0.035 Score=29.20 Aligned_cols=24 Identities=13% Similarity=0.207 Sum_probs=14.2
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHH
Q 016027 357 FKRLNDEFKKRGMTALAQKLCNVM 380 (396)
Q Consensus 357 ~~~l~~~~~~~g~~~~A~~~~~~~ 380 (396)
|..|...|.+.|++++|++++++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455666666666666666666663
No 291
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=95.13 E-value=1.6 Score=38.17 Aligned_cols=127 Identities=12% Similarity=-0.004 Sum_probs=85.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHH
Q 016027 39 LIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNG 118 (396)
Q Consensus 39 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~ 118 (396)
-+.--...|+...|-+-+..+.+. .|.++.............|+++.+...+..+... +.....+...+++.
T Consensus 295 si~k~~~~gd~~aas~~~~~~lr~-----~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~---~~s~~~~~~~~~r~ 366 (831)
T PRK15180 295 SITKQLADGDIIAASQQLFAALRN-----QQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI---IGTTDSTLRCRLRS 366 (831)
T ss_pred HHHHHhhccCHHHHHHHHHHHHHh-----CCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh---hcCCchHHHHHHHh
Confidence 344445667777666555555543 2555555555566677788999888888776543 23355677788888
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 016027 119 WFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEG 174 (396)
Q Consensus 119 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 174 (396)
..+.|+++.|..+-..|....++ +...........-..|-++++.-.|+++...+
T Consensus 367 ~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 367 LHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred hhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 88889999999888888877665 55555544444555677888888888877654
No 292
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.05 E-value=0.2 Score=37.87 Aligned_cols=117 Identities=13% Similarity=0.017 Sum_probs=82.3
Q ss_pred HHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHH
Q 016027 16 CLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYF 95 (396)
Q Consensus 16 ~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 95 (396)
....++...++. +....-+-..++..+...|++++|...++......... .....+-..|.+.....|.+++|+..+
T Consensus 73 ~~~ekf~~~n~~-t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De--~lk~l~~lRLArvq~q~~k~D~AL~~L 149 (207)
T COG2976 73 AAAEKFVQANGK-TIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDE--NLKALAALRLARVQLQQKKADAALKTL 149 (207)
T ss_pred HHHHHHHhhccc-cHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhH--HHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 344666665322 21112344577889999999999999999888642100 111223445778888999999999999
Q ss_pred HHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 016027 96 HKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKEN 139 (396)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 139 (396)
+..... ++ .......-.+.+...|+-++|..-|++.++.+
T Consensus 150 ~t~~~~--~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 150 DTIKEE--SW--AAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred hccccc--cH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 998877 22 33445566788999999999999999999875
No 293
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.97 E-value=0.84 Score=32.20 Aligned_cols=138 Identities=13% Similarity=0.144 Sum_probs=75.0
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 016027 225 CKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAI 304 (396)
Q Consensus 225 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 304 (396)
.-.|..++..++..+...+. +..-+|.++--....-+-+-..++++.+-+. .|.. .+|++....
T Consensus 13 ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGki---FDis----------~C~NlKrVi 76 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKI---FDIS----------KCGNLKRVI 76 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGG---S-GG----------G-S-THHHH
T ss_pred HHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhh---cCch----------hhcchHHHH
Confidence 34677777888877777642 4555666655554445555555555554331 2221 123333332
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhccc
Q 016027 305 QVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFKKRGMTALAQKLCNVMSSVP 384 (396)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 384 (396)
..+-.+- .+.......+..+...|+-+.-.+++.++.+.+ .+++.....+..+|.+.|+..++.+++.+.-+.+
T Consensus 77 ~C~~~~n-----~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 77 ECYAKRN-----KLSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHTT--------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 2222211 134455566677778888888888888877533 6777788888888888888888888888766544
No 294
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.91 E-value=0.33 Score=39.09 Aligned_cols=90 Identities=13% Similarity=0.114 Sum_probs=67.3
Q ss_pred CCChhHHHHHHHHHHc-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC----------------CHHHHH
Q 016027 141 TPNVVTYGTLVEGYCR-----LRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAG----------------RFEEVS 199 (396)
Q Consensus 141 ~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------------~~~~a~ 199 (396)
+-|..+|...+..+.. .+..+-....++.|.+.|+.-|..+|+.|++.+-+-. +-+-++
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 3466677776666644 3566666777888889999999999999988764432 234477
Q ss_pred HHHHHHHhcCCCCchhhHHHHHHHHHhcCCh
Q 016027 200 GMMERFLVCEPGPTMVTYTSLVKGYCKAGDL 230 (396)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 230 (396)
+++++|...|+.||..+-..+++++.+.+..
T Consensus 144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 144 KVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 8888888888888888888888888877763
No 295
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=94.91 E-value=0.44 Score=35.67 Aligned_cols=110 Identities=18% Similarity=0.157 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCC----------hHHHHHHHHHHhhccCCCCCChHHHHHHHHH
Q 016027 49 VEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGR----------VKAASEYFHKRKELDQSWAPTVRVYNILLNG 118 (396)
Q Consensus 49 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~ 118 (396)
++.|.+.++.....+ |.|...++..+.++....+ +++|++-|+.+...+|. ...++..+..+
T Consensus 7 FE~ark~aea~y~~n-----P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~---~hdAlw~lGnA 78 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-----PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPN---KHDALWCLGNA 78 (186)
T ss_dssp HHHHHHHHHHHHHH------TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-----cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHH
Confidence 566777777666654 7788877777776665432 44566666667766554 44566666666
Q ss_pred HHhcC----C-------hhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 016027 119 WFRSK----N-------VKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEG 174 (396)
Q Consensus 119 ~~~~~----~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 174 (396)
+...+ + +++|...|++... ..|+...|+.-+.... +|-++..++.+.+
T Consensus 79 ~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~------kap~lh~e~~~~~ 137 (186)
T PF06552_consen 79 YTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMAA------KAPELHMEIHKQG 137 (186)
T ss_dssp HHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHH------THHHHHHHHHHSS
T ss_pred HHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHH------hhHHHHHHHHHHH
Confidence 65433 2 5555666665555 3678888887777653 3556666666654
No 296
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=94.89 E-value=1.3 Score=34.01 Aligned_cols=80 Identities=14% Similarity=0.115 Sum_probs=53.6
Q ss_pred HHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhC---CCCCChhHHHHHHHHHHcc
Q 016027 81 SLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKE---NVTPNVVTYGTLVEGYCRL 157 (396)
Q Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~ 157 (396)
.+.+.|+ +.|.+.|-.+... +.--++.....|+..|. ..+.++++.++.+..+. +-.+|+..+..|+..+.+.
T Consensus 116 ~Wsr~~d-~~A~~~fL~~E~~--~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~ 191 (203)
T PF11207_consen 116 HWSRFGD-QEALRRFLQLEGT--PELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKL 191 (203)
T ss_pred HhhccCc-HHHHHHHHHHcCC--CCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHh
Confidence 3445555 5677777776653 22345555555555554 67788888888777654 3367788888888888888
Q ss_pred CCHHHHH
Q 016027 158 RRVDRAI 164 (396)
Q Consensus 158 ~~~~~a~ 164 (396)
|+++.|.
T Consensus 192 ~~~e~AY 198 (203)
T PF11207_consen 192 KNYEQAY 198 (203)
T ss_pred cchhhhh
Confidence 8888764
No 297
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=94.86 E-value=3.5 Score=38.72 Aligned_cols=234 Identities=12% Similarity=0.120 Sum_probs=92.1
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCchhhHHHHHHHHHhc---
Q 016027 152 EGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEP-GPTMVTYTSLVKGYCKA--- 227 (396)
Q Consensus 152 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~--- 227 (396)
..+.-.|+++.|++++-+ ..+...+..++...+..|.-.+-.+... ..+..... .+...-+..|+..|.+.
T Consensus 266 ~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~~ 340 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFEI 340 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTTT
T ss_pred HHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHhc
Confidence 444556788888877755 2223445555544444332222111111 22222111 11224577778777764
Q ss_pred CChHHHHHHHHHHHHCCCCCChhhHHHHHH-HHhccCCHHHHH-----------HHHHHHHH-CCCCC-Chh---hHHHH
Q 016027 228 GDLEGASKILKMMISRGFLPSPTTYNYFFR-YFSKFGKVEDAM-----------NLYRKMIE-SGYTP-DRL---TYHIL 290 (396)
Q Consensus 228 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~-----------~~~~~~~~-~~~~~-~~~---~~~~l 290 (396)
.++..|.+.+--+....-+.....+...+. .....++++.-+ -++++-.. .+... +.. .....
T Consensus 341 td~~~Al~Y~~li~~~~~~~~~~l~~~~l~eLvletref~~LLG~i~~dG~r~~G~i~~~~~Li~~~~~~~~~~~i~~~~ 420 (613)
T PF04097_consen 341 TDPREALQYLYLICLFKDPEQRNLFHECLRELVLETREFDLLLGDINPDGSRTPGLIERRLSLIKFDDDEDFLREIIEQA 420 (613)
T ss_dssp T-HHHHHHHHHGGGGS-SCCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HHHHTGGGGT-SSSSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHccCCHHHHCCCCCCCCccccceeeccccccCCCCcHHHHHHHHHHH
Confidence 467777777776665432111222222221 112222221111 01111000 01111 111 12223
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH-HHHhcCC-----------hhHHHHHHHHHHHCC-----CC-C
Q 016027 291 LKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIH-LLCRMYK-----------FDEASAEFEDMIRRG-----LV-P 352 (396)
Q Consensus 291 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~-----------~~~a~~~~~~~~~~~-----~~-p 352 (396)
..-+...|+++.|..+|..+.+.. .-....+.++. +...... ...|..+.+.....+ +. .
T Consensus 421 A~~~e~~g~~~dAi~Ly~La~~~d--~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~~i~~~y~~~~~~~~~~~~~ 498 (613)
T PF04097_consen 421 AREAEERGRFEDAILLYHLAEEYD--KVLSLLNRLLSQVLSQPSSSSLSDSERERLIELAKEILERYKSNPHISSKVSRK 498 (613)
T ss_dssp HHHHHHCT-HHHHHHHHHHTT-HH--HHHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHHHHHHHHTTSHHHHTTS-HH
T ss_pred HHHHHHCCCHHHHHHHHHHHhhHH--HHHHHHHHHHHHHHcCccccccccchhhhHHHHHHHHHHHHHhCcchHhhccHH
Confidence 344556778888887777665321 01122222222 2222222 223344443332211 11 1
Q ss_pred CHHHHHHHHH-----HHHHcCCchHHHHHHHHHhccchhhhhhhh
Q 016027 353 HYLTFKRLND-----EFKKRGMTALAQKLCNVMSSVPRSMELLDS 392 (396)
Q Consensus 353 ~~~~~~~l~~-----~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 392 (396)
+..|+..|++ .+.+.|++++|++.++++.-.|.++..+.+
T Consensus 499 ~~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L~liP~~~~~V~~ 543 (613)
T PF04097_consen 499 NRETFQLLLDLAEFFDLYHAGQYEQALDIIEKLDLIPLDPSEVRR 543 (613)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHTT-S-S-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCCHHHHHH
Confidence 2345555544 236899999999999999888866555444
No 298
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=94.60 E-value=1.7 Score=33.83 Aligned_cols=64 Identities=17% Similarity=0.167 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 016027 179 AIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISR 243 (396)
Q Consensus 179 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 243 (396)
+.+||-+.-.+...|+++.|.+.|+...+.++..+-...|.-+ ++.-.|++.-|.+-+...-+.
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~~~fYQ~ 162 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDLLAFYQD 162 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHHHHHHhc
Confidence 4455555555566666666666666665544432222222222 222345566665555554444
No 299
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=94.34 E-value=0.39 Score=39.84 Aligned_cols=94 Identities=17% Similarity=0.019 Sum_probs=67.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHH
Q 016027 37 VILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILL 116 (396)
Q Consensus 37 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~ 116 (396)
..-+.-|.++|.+++|+++|.+..... |.++.++..-..+|.+..++..|..=...+..++.. -+..|..-+
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~~-----P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~---Y~KAYSRR~ 172 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAVY-----PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL---YVKAYSRRM 172 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhccC-----CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH---HHHHHHHHH
Confidence 344667888999999999999888874 668888888999999999998888877777665321 233455444
Q ss_pred HHHHhcCChhHHHHHHHHHHhC
Q 016027 117 NGWFRSKNVKDAERFWLEMRKE 138 (396)
Q Consensus 117 ~~~~~~~~~~~a~~~~~~~~~~ 138 (396)
.+-...|...+|.+-++..+..
T Consensus 173 ~AR~~Lg~~~EAKkD~E~vL~L 194 (536)
T KOG4648|consen 173 QARESLGNNMEAKKDCETVLAL 194 (536)
T ss_pred HHHHHHhhHHHHHHhHHHHHhh
Confidence 4444556666777666666654
No 300
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=94.31 E-value=4.7 Score=37.92 Aligned_cols=194 Identities=13% Similarity=0.069 Sum_probs=114.3
Q ss_pred hhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHH-HcCCHHHHHHHHHHHhhcccccCCCC-chhHHHHHHHHHHHcCChH
Q 016027 12 DSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYA-RAGMVEAAIWTFEFANNLDMVKNFDS-GASLFEILLDSLCKQGRVK 89 (396)
Q Consensus 12 ~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~ 89 (396)
..|++.++.+.+...-|+.....+...++..+. ...+++.|...+++........++.. .-.....++..+.+.+...
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 445666666664333333333557778888877 78999999999998877632211111 1223446677777777666
Q ss_pred HHHHHHHHHhhccCCCCCChHH--HHHH-HHHHHhcCChhHHHHHHHHHHhCC---CCCChhHHHHHHHHHH--ccCCHH
Q 016027 90 AASEYFHKRKELDQSWAPTVRV--YNIL-LNGWFRSKNVKDAERFWLEMRKEN---VTPNVVTYGTLVEGYC--RLRRVD 161 (396)
Q Consensus 90 ~A~~~~~~~~~~~~~~~~~~~~--~~~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~--~~~~~~ 161 (396)
|...+++..+.-.+..-+... +.-+ +..+...+++..|.+.++.+...- ..|....+-.++.+.. ..+..+
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~ 196 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPD 196 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCch
Confidence 999999877653332222222 2222 222333479999999998876542 2334444444555443 445567
Q ss_pred HHHHHHHHHHHcC---------CCCCHHHHHHHHHHH--HHcCCHHHHHHHHHHHH
Q 016027 162 RAIRLVKEMRKEG---------IEPNAIVYNTVIDGL--VEAGRFEEVSGMMERFL 206 (396)
Q Consensus 162 ~a~~~~~~~~~~~---------~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~ 206 (396)
++++.++.+.... ..|...++..+++.+ ...|+++.+...++++.
T Consensus 197 d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 197 DVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred hHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7777777764322 133455666666554 45677767666655543
No 301
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=94.22 E-value=0.2 Score=41.38 Aligned_cols=91 Identities=14% Similarity=0.042 Sum_probs=73.0
Q ss_pred hhhhhccCchhHHHHHHHHhCCCCCC-CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHH
Q 016027 3 KVLAKAKEFDSAWCLLLDKIGGHEVP-DFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDS 81 (396)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 81 (396)
+-|.++|.|++|+..|...+.. .| + +..+..-+.+|.+..++..|..-.+.+..++ ..-..+|..-+.+
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~--~P~N---pV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-----~~Y~KAYSRR~~A 174 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAV--YPHN---PVYHINRALAYLKQKSFAQAEEDCEAAIALD-----KLYVKAYSRRMQA 174 (536)
T ss_pred hhhhhccchhHHHHHhhhhhcc--CCCC---ccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-----HHHHHHHHHHHHH
Confidence 4588999999999999999885 44 3 4578888889999999999998888888775 4445667777777
Q ss_pred HHHcCChHHHHHHHHHHhhccC
Q 016027 82 LCKQGRVKAASEYFHKRKELDQ 103 (396)
Q Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~ 103 (396)
-...|...+|.+=++.+..+.|
T Consensus 175 R~~Lg~~~EAKkD~E~vL~LEP 196 (536)
T KOG4648|consen 175 RESLGNNMEAKKDCETVLALEP 196 (536)
T ss_pred HHHHhhHHHHHHhHHHHHhhCc
Confidence 7778888888888888887644
No 302
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.12 E-value=3 Score=34.87 Aligned_cols=131 Identities=13% Similarity=0.219 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--cC----CHHHHHHHHHHHHhcCCC---CchhhHHHHHHHHHhcCC--
Q 016027 161 DRAIRLVKEMRKEGIEPNAIVYNTVIDGLVE--AG----RFEEVSGMMERFLVCEPG---PTMVTYTSLVKGYCKAGD-- 229 (396)
Q Consensus 161 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~-- 229 (396)
++.+.+++.|.+.|+.-+..++-+....... .. ....|..+|+.|.+..+- ++...+..++.. ..++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 3455677777777776666555543333322 12 245577778888776542 334445544433 3333
Q ss_pred --hHHHHHHHHHHHHCCCCCCh--hhHHHHHHHHhccCC--HHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 016027 230 --LEGASKILKMMISRGFLPSP--TTYNYFFRYFSKFGK--VEDAMNLYRKMIESGYTPDRLTYHILLKI 293 (396)
Q Consensus 230 --~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 293 (396)
.+.++.+|+.+.+.|+..+. ...+.++..+..... ...+..+++.+.+.++++....|..+.-.
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHH
Confidence 34556667777766655433 233333333332222 33667777777777777776666655443
No 303
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=94.07 E-value=5.7 Score=37.90 Aligned_cols=222 Identities=10% Similarity=0.021 Sum_probs=118.9
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCChh-------HHHHHH-HHHHccCCHHHHHHHHHHHHHc----CCCCCHHHHHHHHH
Q 016027 120 FRSKNVKDAERFWLEMRKENVTPNVV-------TYGTLV-EGYCRLRRVDRAIRLVKEMRKE----GIEPNAIVYNTVID 187 (396)
Q Consensus 120 ~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~-~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~ 187 (396)
....++.+|..+..++...-..|+.. .++.+- ......|+++.+.++.+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 44788999999988876653232222 233322 2234568889999988887765 12234455666677
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCchhh---HHHH--HHHHHhcCC--hHHHHHHHHHHHHCCC--C----CChhhHHH
Q 016027 188 GLVEAGRFEEVSGMMERFLVCEPGPTMVT---YTSL--VKGYCKAGD--LEGASKILKMMISRGF--L----PSPTTYNY 254 (396)
Q Consensus 188 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l--~~~~~~~~~--~~~a~~~~~~~~~~~~--~----~~~~~~~~ 254 (396)
+..-.|++++|..+..+..+....-+... |..+ ...+...|+ +.+....|........ . +-..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 77888999999988887766422223322 2222 223445563 3333344444333210 1 12234444
Q ss_pred HHHHHhccCCHHHHHHHHHH----HHHCCCCCChhhH--HHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----ChhhHHH
Q 016027 255 FFRYFSKFGKVEDAMNLYRK----MIESGYTPDRLTY--HILLKILCKEDKLDLAIQVSKEMKCRGCDI----DLDTSTM 324 (396)
Q Consensus 255 l~~~~~~~~~~~~a~~~~~~----~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~ 324 (396)
++.++.+ .+.+..-... .......|-.... ..|+......|++++|...+.++......+ +-.....
T Consensus 586 ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~ 662 (894)
T COG2909 586 LLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAY 662 (894)
T ss_pred HHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 5555544 3333222222 2222222222222 256777888999999999988887653332 2222222
Q ss_pred HHH--HHHhcCChhHHHHHHHH
Q 016027 325 LIH--LLCRMYKFDEASAEFED 344 (396)
Q Consensus 325 l~~--~~~~~~~~~~a~~~~~~ 344 (396)
.+. .....|+...+.....+
T Consensus 663 ~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 663 KVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HhhHHHhcccCCHHHHHHHHHh
Confidence 222 22356777777766655
No 304
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.94 E-value=5.8 Score=37.54 Aligned_cols=120 Identities=13% Similarity=0.219 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHH
Q 016027 35 TFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNI 114 (396)
Q Consensus 35 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 114 (396)
....-+..+.+..-++-|+.+-..-.... ..-..+....+.-+.+.|++++|...|-+... -..| ..
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~~~d~-----d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~---~le~-----s~ 402 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQHLDE-----DTLAEIHRKYGDYLYGKGDFDEATDQYIETIG---FLEP-----SE 402 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhcCCCH-----HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcc---cCCh-----HH
Confidence 45566777778888888887765332210 11233444555666678888888888776654 2223 23
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHH
Q 016027 115 LLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVK 168 (396)
Q Consensus 115 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 168 (396)
++.-|....+..+-..+++.+.+.|.. +...-..|+.+|.+.++.++-.++.+
T Consensus 403 Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~ 455 (933)
T KOG2114|consen 403 VIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFIS 455 (933)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHh
Confidence 455566677777777788888888766 66666778888888877665544443
No 305
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=93.93 E-value=11 Score=40.51 Aligned_cols=62 Identities=11% Similarity=-0.031 Sum_probs=45.9
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 016027 284 RLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRR 348 (396)
Q Consensus 284 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 348 (396)
..+|....+.....|.++.|...+-.+.+.+ -+..+-..+..+...|+-..|+.++++.++.
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 3567777777777888888887777776654 3355666677778888888888888888754
No 306
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.92 E-value=1.9 Score=31.85 Aligned_cols=89 Identities=15% Similarity=0.114 Sum_probs=47.9
Q ss_pred HHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCH
Q 016027 81 SLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRV 160 (396)
Q Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 160 (396)
.-...++.+++..++..+....|+ .|...++..+ .++..|+|.+|..+|+++.... |....-..|+..|.....-
T Consensus 19 ~al~~~~~~D~e~lL~ALrvLRP~-~~e~~~~~~~--l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 19 VALRLGDPDDAEALLDALRVLRPE-FPELDLFDGW--LHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLYALGD 93 (160)
T ss_pred HHHccCChHHHHHHHHHHHHhCCC-chHHHHHHHH--HHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHHcCC
Confidence 334556777777777777766444 2223333333 3566777888888877776542 3333444455444444333
Q ss_pred HHHHHHHHHHHHcC
Q 016027 161 DRAIRLVKEMRKEG 174 (396)
Q Consensus 161 ~~a~~~~~~~~~~~ 174 (396)
..-..+-+++.+.+
T Consensus 94 ~~Wr~~A~evle~~ 107 (160)
T PF09613_consen 94 PSWRRYADEVLESG 107 (160)
T ss_pred hHHHHHHHHHHhcC
Confidence 33333344455543
No 307
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.88 E-value=5.4 Score=36.97 Aligned_cols=278 Identities=15% Similarity=0.100 Sum_probs=164.3
Q ss_pred hHHHHHHHHHHhhccCCCCCChHHHHHHHHHH-----HhcCChhHHHHHHHHHHh-------CCCCCChhHHHHHHHHHH
Q 016027 88 VKAASEYFHKRKELDQSWAPTVRVYNILLNGW-----FRSKNVKDAERFWLEMRK-------ENVTPNVVTYGTLVEGYC 155 (396)
Q Consensus 88 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~ 155 (396)
...|.++++..... + +......+..++ ....+++.|+.+|+.+.. .| .......+..+|.
T Consensus 228 ~~~a~~~~~~~a~~--g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~ 299 (552)
T KOG1550|consen 228 LSEAFKYYREAAKL--G---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYL 299 (552)
T ss_pred hhHHHHHHHHHHhh--c---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHh
Confidence 46788888888776 3 444444444333 345789999999998876 44 4446677777777
Q ss_pred ccC-----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHH--hc
Q 016027 156 RLR-----RVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVE-AGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYC--KA 227 (396)
Q Consensus 156 ~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~ 227 (396)
+.. +.+.|..++....+.| .|+.......+..... ..+...|.++|...-..|.. ....+..++.... ..
T Consensus 300 ~g~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 300 QGLGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVE 377 (552)
T ss_pred cCCCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcC
Confidence 743 6677999999998887 4455444333322222 24678999999999887763 3222222222111 23
Q ss_pred CChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHH-H---HHh----cCC
Q 016027 228 GDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLK-I---LCK----EDK 299 (396)
Q Consensus 228 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-~---~~~----~~~ 299 (396)
.+.+.|..++.+..+.| .|....-...+..+.. +.++.+.-.+..+.+.+.. ...+-...+. . ... ..+
T Consensus 378 r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~-~~q~~a~~l~~~~~~~~~~~~~~~~ 454 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE-VAQSNAAYLLDQSEEDLFSRGVIST 454 (552)
T ss_pred CCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh-HHhhHHHHHHHhccccccccccccc
Confidence 46889999999999887 3332222222333333 7777777777666665533 2222111111 1 111 225
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCch
Q 016027 300 LDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRM----YKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFKK----RGMTA 371 (396)
Q Consensus 300 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~ 371 (396)
.+.+...+.+....| +......+...|... .+++.|...+......+ ....-.+...+.+ .. +.
T Consensus 455 ~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~----~~~~~nlg~~~e~g~g~~~-~~ 526 (552)
T KOG1550|consen 455 LERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG----AQALFNLGYMHEHGEGIKV-LH 526 (552)
T ss_pred hhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh----hHHHhhhhhHHhcCcCcch-hH
Confidence 566777777776655 556666666665443 35788888888777654 2233233322221 22 57
Q ss_pred HHHHHHHHHhccchh
Q 016027 372 LAQKLCNVMSSVPRS 386 (396)
Q Consensus 372 ~A~~~~~~~~~~~~~ 386 (396)
.|.+++++..+....
T Consensus 527 ~a~~~~~~~~~~~~~ 541 (552)
T KOG1550|consen 527 LAKRYYDQASEEDSR 541 (552)
T ss_pred HHHHHHHHHHhcCch
Confidence 888888887665443
No 308
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=93.83 E-value=4.3 Score=35.71 Aligned_cols=124 Identities=12% Similarity=0.051 Sum_probs=89.4
Q ss_pred hhhccCchhHHHHHHHHhCCCC-CCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHH
Q 016027 5 LAKAKEFDSAWCLLLDKIGGHE-VPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLC 83 (396)
Q Consensus 5 ~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 83 (396)
....|++-.|-+-++++++... .|+ -...........|+++.+.+.+.-+... +.....+...+++...
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~-----~i~l~~~i~~~lg~ye~~~~~~s~~~~~-----~~s~~~~~~~~~r~~~ 368 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPV-----LIQLRSVIFSHLGYYEQAYQDISDVEKI-----IGTTDSTLRCRLRSLH 368 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCch-----hhHHHHHHHHHhhhHHHHHHHhhchhhh-----hcCCchHHHHHHHhhh
Confidence 3457888888888888887543 333 3344455678899999999998877664 3555667888999999
Q ss_pred HcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 016027 84 KQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVT 141 (396)
Q Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 141 (396)
+.|++++|...-..|....- .+...........-..|-++++...|+++...+.+
T Consensus 369 ~l~r~~~a~s~a~~~l~~ei---e~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 369 GLARWREALSTAEMMLSNEI---EDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred chhhHHHHHHHHHHHhcccc---CChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 99999999999988876421 24444444444555667889999999988765433
No 309
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=93.77 E-value=0.29 Score=32.16 Aligned_cols=49 Identities=8% Similarity=-0.136 Sum_probs=28.9
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 016027 299 KLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIR 347 (396)
Q Consensus 299 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 347 (396)
+.-++.+-++.+.....-|++.+..+.+++|-+.+++..|.++|+-...
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3344555555555555556666666666666666666666666665543
No 310
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=93.70 E-value=0.15 Score=25.79 Aligned_cols=28 Identities=25% Similarity=0.209 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 016027 35 TFVILIRRYARAGMVEAAIWTFEFANNL 62 (396)
Q Consensus 35 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 62 (396)
++..++.++.+.|++++|.+.|+++...
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4556666667777777777777766664
No 311
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=93.68 E-value=4 Score=34.76 Aligned_cols=107 Identities=13% Similarity=0.046 Sum_probs=67.7
Q ss_pred HHHHhCCCCCCCCCChhHHHHHHHHHHHcCC------------HHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHc
Q 016027 18 LLDKIGGHEVPDFVSKDTFVILIRRYARAGM------------VEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQ 85 (396)
Q Consensus 18 ~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~------------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 85 (396)
|.+.++. .|. +..+|..++..--..-. .+.-+.+++++.+.+ |.+......++..+.+.
T Consensus 8 l~~~v~~--~P~--di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n-----p~~~~L~l~~l~~~~~~ 78 (321)
T PF08424_consen 8 LNRRVRE--NPH--DIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN-----PDSERLLLGYLEEGEKV 78 (321)
T ss_pred HHHHHHh--Ccc--cHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHh
Confidence 3455553 454 47788888864333322 455667777777764 67777777777777777
Q ss_pred CChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHh---cCChhHHHHHHHHHH
Q 016027 86 GRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFR---SKNVKDAERFWLEMR 136 (396)
Q Consensus 86 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~ 136 (396)
.+.++..+-++++...+++ +...|...+..... .-.+.....+|.+.+
T Consensus 79 ~~~~~l~~~we~~l~~~~~---~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l 129 (321)
T PF08424_consen 79 WDSEKLAKKWEELLFKNPG---SPELWREYLDFRQSNFASFTVSDVRDVYEKCL 129 (321)
T ss_pred CCHHHHHHHHHHHHHHCCC---ChHHHHHHHHHHHHHhccCcHHHHHHHHHHHH
Confidence 7777777778887776554 66677766665544 224555555555443
No 312
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=93.54 E-value=2.6 Score=33.30 Aligned_cols=84 Identities=17% Similarity=0.060 Sum_probs=38.0
Q ss_pred HHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcC
Q 016027 44 ARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSK 123 (396)
Q Consensus 44 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 123 (396)
....+++.|+..|.+++... |..+.-|..-+.++.+..+++.+..--.++.+..++ .+....-+..+.....
T Consensus 21 f~~k~y~~ai~~y~raI~~n-----P~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N---~vk~h~flg~~~l~s~ 92 (284)
T KOG4642|consen 21 FIPKRYDDAIDCYSRAICIN-----PTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPN---LVKAHYFLGQWLLQSK 92 (284)
T ss_pred cchhhhchHHHHHHHHHhcC-----CCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChH---HHHHHHHHHHHHHhhc
Confidence 33444455555555554442 333344444445555555555555444444444322 2223333444444445
Q ss_pred ChhHHHHHHHHH
Q 016027 124 NVKDAERFWLEM 135 (396)
Q Consensus 124 ~~~~a~~~~~~~ 135 (396)
.+++|+..+.+.
T Consensus 93 ~~~eaI~~Lqra 104 (284)
T KOG4642|consen 93 GYDEAIKVLQRA 104 (284)
T ss_pred cccHHHHHHHHH
Confidence 555555544443
No 313
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=93.52 E-value=0.2 Score=25.64 Aligned_cols=27 Identities=33% Similarity=0.352 Sum_probs=13.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhc
Q 016027 75 FEILLDSLCKQGRVKAASEYFHKRKEL 101 (396)
Q Consensus 75 ~~~l~~~~~~~~~~~~A~~~~~~~~~~ 101 (396)
|..++..|...|++++|.+.|++..+.
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 444444555555555555555544443
No 314
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=93.51 E-value=0.24 Score=25.38 Aligned_cols=30 Identities=30% Similarity=0.349 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHhhcc
Q 016027 34 DTFVILIRRYARAGMVEAAIWTFEFANNLD 63 (396)
Q Consensus 34 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 63 (396)
.+|..++..+...|++++|...|+++.+..
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 478899999999999999999999998874
No 315
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.38 E-value=6.6 Score=36.41 Aligned_cols=274 Identities=11% Similarity=0.020 Sum_probs=158.9
Q ss_pred HHHHHHHHHHHhhcccccCCCCchhHHHHHHHHH-----HHcCChHHHHHHHHHHhh-------ccCCCCCChHHHHHHH
Q 016027 49 VEAAIWTFEFANNLDMVKNFDSGASLFEILLDSL-----CKQGRVKAASEYFHKRKE-------LDQSWAPTVRVYNILL 116 (396)
Q Consensus 49 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~A~~~~~~~~~-------~~~~~~~~~~~~~~l~ 116 (396)
...|.++++.+-+.+ +......++.+| ....+.+.|..+|..+.. . + .......+.
T Consensus 228 ~~~a~~~~~~~a~~g-------~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~--~---~~~a~~~lg 295 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG-------HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATK--G---LPPAQYGLG 295 (552)
T ss_pred hhHHHHHHHHHHhhc-------chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhh--c---CCccccHHH
Confidence 467888888887764 222333333333 345789999999998866 2 2 333566777
Q ss_pred HHHHhcC-----ChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHc-cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 016027 117 NGWFRSK-----NVKDAERFWLEMRKENVTPNVVTYGTLVEGYCR-LRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLV 190 (396)
Q Consensus 117 ~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 190 (396)
.+|.+.. +.+.|..+|.+.-..|.+ +...+...+..... ..+...|.++|....+.|.. ..+-.+..+|.
T Consensus 296 ~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~ 371 (552)
T KOG1550|consen 296 RLYLQGLGVEKIDYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYE 371 (552)
T ss_pred HHHhcCCCCccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHH
Confidence 7777743 667799999998887633 55444333333322 24678999999999999842 22222332222
Q ss_pred ----HcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHH----hc-
Q 016027 191 ----EAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYF----SK- 261 (396)
Q Consensus 191 ----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~- 261 (396)
...+.+.|..++++.-+.|. |....-...+..+.. +.++.+...+..+.+.+.. ...+-...+..- ..
T Consensus 372 ~G~gv~r~~~~A~~~~k~aA~~g~-~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~-~~q~~a~~l~~~~~~~~~~ 448 (552)
T KOG1550|consen 372 LGLGVERNLELAFAYYKKAAEKGN-PSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE-VAQSNAAYLLDQSEEDLFS 448 (552)
T ss_pred hCCCcCCCHHHHHHHHHHHHHccC-hhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh-HHhhHHHHHHHhccccccc
Confidence 23478899999999998873 332222333334444 7788887777777776543 222222222111 11
Q ss_pred ---cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc----CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH----
Q 016027 262 ---FGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKE----DKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLC---- 330 (396)
Q Consensus 262 ---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---- 330 (396)
..+...+...+......| +......+...|..- .+++.+...+......+ ....-.+...+-
T Consensus 449 ~~~~~~~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~----~~~~~nlg~~~e~g~g 521 (552)
T KOG1550|consen 449 RGVISTLERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG----AQALFNLGYMHEHGEG 521 (552)
T ss_pred cccccchhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh----hHHHhhhhhHHhcCcC
Confidence 224556666666665554 344444455444332 35777777777776654 222222332221
Q ss_pred hcCChhHHHHHHHHHHHCC
Q 016027 331 RMYKFDEASAEFEDMIRRG 349 (396)
Q Consensus 331 ~~~~~~~a~~~~~~~~~~~ 349 (396)
... +..|.+.++...+.+
T Consensus 522 ~~~-~~~a~~~~~~~~~~~ 539 (552)
T KOG1550|consen 522 IKV-LHLAKRYYDQASEED 539 (552)
T ss_pred cch-hHHHHHHHHHHHhcC
Confidence 123 677777777776643
No 316
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=93.38 E-value=2.5 Score=33.39 Aligned_cols=121 Identities=12% Similarity=0.061 Sum_probs=78.8
Q ss_pred HHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChh-HHHHHHHHHHccC
Q 016027 80 DSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVV-TYGTLVEGYCRLR 158 (396)
Q Consensus 80 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~ 158 (396)
.-|....++..|+..|.+++..+|. .+..|..-+.++.+..+++.+..--...++. .||.. ....+........
T Consensus 18 nk~f~~k~y~~ai~~y~raI~~nP~---~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~ 92 (284)
T KOG4642|consen 18 NKCFIPKRYDDAIDCYSRAICINPT---VASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSK 92 (284)
T ss_pred ccccchhhhchHHHHHHHHHhcCCC---cchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhc
Confidence 3444556788888888888776432 2355677777888888888888777776664 45544 3444556666777
Q ss_pred CHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 016027 159 RVDRAIRLVKEMRKE----GIEPNAIVYNTVIDGLVEAGRFEEVSGMMERF 205 (396)
Q Consensus 159 ~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 205 (396)
.+++|+..+.+..+. .+++.......|..+-...-...+..++.+..
T Consensus 93 ~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 93 GYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred cccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 888888888877442 34555566666666555555555566655554
No 317
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=93.30 E-value=7.4 Score=36.69 Aligned_cols=377 Identities=14% Similarity=0.098 Sum_probs=180.1
Q ss_pred hhhhhccCchhHHHHHHHHhCCCCCCC-CCChhHHHHH-HHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHH
Q 016027 3 KVLAKAKEFDSAWCLLLDKIGGHEVPD-FVSKDTFVIL-IRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLD 80 (396)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 80 (396)
..+.+.+... |...+++.++...... ......+..+ +..+...+++..|++.++.+....... ..+...++..++.
T Consensus 108 ~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~-~d~~~~v~~~l~~ 185 (608)
T PF10345_consen 108 RIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQR-GDPAVFVLASLSE 185 (608)
T ss_pred HHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhc-CCHHHHHHHHHHH
Confidence 4455554444 8888888876433211 0001222233 223333489999999999888864221 2344445555555
Q ss_pred HHH--HcCChHHHHHHHHHHhhccCC-------CCCChHHHHHHHHHH--HhcCChhHHHHHHHHHHh---CC-CC----
Q 016027 81 SLC--KQGRVKAASEYFHKRKELDQS-------WAPTVRVYNILLNGW--FRSKNVKDAERFWLEMRK---EN-VT---- 141 (396)
Q Consensus 81 ~~~--~~~~~~~A~~~~~~~~~~~~~-------~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~---~~-~~---- 141 (396)
+.. ..+..+++.+..+.+.....+ ..|-..+|..++..+ ...|+++.+...++++.+ .. -.
T Consensus 186 ~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~ 265 (608)
T PF10345_consen 186 ALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWP 265 (608)
T ss_pred HHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCC
Confidence 544 345567777777766332111 234566677766654 456776676666555432 10 00
Q ss_pred ----------------------CChhHH---------HHHHH--HHHccCCHHHHHHHHH-------HHH-HcCCCCC--
Q 016027 142 ----------------------PNVVTY---------GTLVE--GYCRLRRVDRAIRLVK-------EMR-KEGIEPN-- 178 (396)
Q Consensus 142 ----------------------~~~~~~---------~~l~~--~~~~~~~~~~a~~~~~-------~~~-~~~~~~~-- 178 (396)
+....| .-++. ..+..+..++|.++++ ... .....+.
T Consensus 266 ~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~s 345 (608)
T PF10345_consen 266 SWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSES 345 (608)
T ss_pred CcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcC
Confidence 111111 11111 1223333335544444 444 1111111
Q ss_pred H------HHHHHHH---------HHHHHcCCHHHHHHHHHHHHhcCCC-Cc-------hhhHHHHHHHHHhcCChHHHHH
Q 016027 179 A------IVYNTVI---------DGLVEAGRFEEVSGMMERFLVCEPG-PT-------MVTYTSLVKGYCKAGDLEGASK 235 (396)
Q Consensus 179 ~------~~~~~l~---------~~~~~~~~~~~a~~~~~~~~~~~~~-~~-------~~~~~~l~~~~~~~~~~~~a~~ 235 (396)
. ..+...+ -...-.+++..|...++.+...... |+ +..+....-.+...|+.+.|..
T Consensus 346 l~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~ 425 (608)
T PF10345_consen 346 LSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALY 425 (608)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHH
Confidence 0 1111111 1224468899999998888764211 11 2222333334456799999999
Q ss_pred HHH--------HHHHCCCCCChhhHHHH--HHHHh--ccCCHHH--HHHHHHHHHHC-CCCC--ChhhHHHHH-HHHHhc
Q 016027 236 ILK--------MMISRGFLPSPTTYNYF--FRYFS--KFGKVED--AMNLYRKMIES-GYTP--DRLTYHILL-KILCKE 297 (396)
Q Consensus 236 ~~~--------~~~~~~~~~~~~~~~~l--~~~~~--~~~~~~~--a~~~~~~~~~~-~~~~--~~~~~~~l~-~~~~~~ 297 (396)
.|. .....+...+..++..+ +..+. ......+ ...+++.+... .-.| +..++..++ .++...
T Consensus 426 ~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~ 505 (608)
T PF10345_consen 426 QYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTF 505 (608)
T ss_pred HHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhC
Confidence 997 44444444344333332 11122 2222233 66666665442 1122 223333333 232221
Q ss_pred C--CHHHHHHHHHHHHHc-----CC-CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCC--CHHHHHH-----HH
Q 016027 298 D--KLDLAIQVSKEMKCR-----GC-DIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRR-GLVP--HYLTFKR-----LN 361 (396)
Q Consensus 298 ~--~~~~a~~~~~~~~~~-----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~p--~~~~~~~-----l~ 361 (396)
. ...++...+.+..+. +. ..-..+++.+...+. .|+..+..+........ .-.| ....|.. +.
T Consensus 506 ~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~ 584 (608)
T PF10345_consen 506 EPFSSNEAKRHLQEALKMANNKLGNSQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLA 584 (608)
T ss_pred CccccHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Confidence 1 122444444433221 11 111223343444444 67777766655544331 1112 3345533 33
Q ss_pred HHHHHcCCchHHHHHHHHHhc
Q 016027 362 DEFKKRGMTALAQKLCNVMSS 382 (396)
Q Consensus 362 ~~~~~~g~~~~A~~~~~~~~~ 382 (396)
..+...|+.++|.....+..+
T Consensus 585 ~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 585 DSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred HHHHHcCcHHHHHHHHHHHHH
Confidence 346788999999998887654
No 318
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.18 E-value=0.25 Score=26.72 Aligned_cols=29 Identities=24% Similarity=0.222 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 016027 34 DTFVILIRRYARAGMVEAAIWTFEFANNL 62 (396)
Q Consensus 34 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 62 (396)
.+++.++..|...|++++|..+++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 46667777777777777777777766654
No 319
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=93.15 E-value=14 Score=39.63 Aligned_cols=323 Identities=9% Similarity=0.014 Sum_probs=168.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHH
Q 016027 38 ILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLN 117 (396)
Q Consensus 38 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~ 117 (396)
.++.+-.+.+.+.+|+..+++-..... ........+..+...|...++++...-+...... .|+ .+. -+.
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek--~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~s--l~~-qil 1457 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEK--EKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPS--LYQ-QIL 1457 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccc--hhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----Ccc--HHH-HHH
Confidence 667777889999999999988421110 0122334455566689999999988777764222 122 333 333
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHHcCCHH
Q 016027 118 GWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNT-VIDGLVEAGRFE 196 (396)
Q Consensus 118 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~ 196 (396)
.....|++..|...|+.+.+.+. +...+++.++......|.++..+-..+-..... .+....++. -+.+--+.++++
T Consensus 1458 ~~e~~g~~~da~~Cye~~~q~~p-~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD 1535 (2382)
T KOG0890|consen 1458 EHEASGNWADAAACYERLIQKDP-DKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWD 1535 (2382)
T ss_pred HHHhhccHHHHHHHHHHhhcCCC-ccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchh
Confidence 45668999999999999988752 246678878877777888888777655554432 233333333 234445677777
Q ss_pred HHHHHHHHHHhcCCCCchhhHHHH--HHHHHhc--CChHHHHHHHHHHHHCCCC---------CChhhHHHHHHHHhccC
Q 016027 197 EVSGMMERFLVCEPGPTMVTYTSL--VKGYCKA--GDLEGASKILKMMISRGFL---------PSPTTYNYFFRYFSKFG 263 (396)
Q Consensus 197 ~a~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~--~~~~~a~~~~~~~~~~~~~---------~~~~~~~~l~~~~~~~~ 263 (396)
....... . .+..+|... +....+. .|.-.-.+.++-+.+.-+. .-...|..++....-..
T Consensus 1536 ~~e~~l~---~----~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~e 1608 (2382)
T KOG0890|consen 1536 LLESYLS---D----RNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLE 1608 (2382)
T ss_pred hhhhhhh---c----ccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHH
Confidence 7666555 1 122233322 2222222 1211111222222221000 01123333333322111
Q ss_pred CHHHHHHHHHHHHH-CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH-HHHcCCC-----CChhhHHHHHHHHHhcCChh
Q 016027 264 KVEDAMNLYRKMIE-SGYTPDRLTYHILLKILCKEDKLDLAIQVSKE-MKCRGCD-----IDLDTSTMLIHLLCRMYKFD 336 (396)
Q Consensus 264 ~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~-----~~~~~~~~l~~~~~~~~~~~ 336 (396)
-..... .+..... .....+...|..-+..-....+..+-+--+++ +...... --..+|-...+.....|.++
T Consensus 1609 l~~~~~-~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q 1687 (2382)
T KOG0890|consen 1609 LENSIE-ELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQ 1687 (2382)
T ss_pred HHHHHH-HhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHH
Confidence 111111 1100000 00111111222222211111111221111111 1111111 13467778888888899999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcc
Q 016027 337 EASAEFEDMIRRGLVPHYLTFKRLNDEFKKRGMTALAQKLCNVMSSV 383 (396)
Q Consensus 337 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 383 (396)
.|...+-...+.+ .| ..+...+...++.|+...|+.++++..+.
T Consensus 1688 ~A~nall~A~e~r-~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1688 RAQNALLNAKESR-LP--EIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHHHHhhhhcc-cc--hHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 9998887777655 33 35667778889999999999999996643
No 320
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.10 E-value=2.8 Score=31.36 Aligned_cols=133 Identities=16% Similarity=0.234 Sum_probs=62.1
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 016027 165 RLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRG 244 (396)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 244 (396)
++++.+.+.+++|+...+..+++.+.+.|++.....++.- ++-+|.......+-.+. +.+..+.++--+|.++
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~----~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR- 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQY----HVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR- 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhh----cccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH-
Confidence 4445555566666666666666666666665544433332 23334333332222221 2233344443333332
Q ss_pred CCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016027 245 FLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMK 311 (396)
Q Consensus 245 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 311 (396)
=...+..+++.+...|++-+|.++.+..... +......++.+..+.++...-..+++-..
T Consensus 88 ---L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~ 147 (167)
T PF07035_consen 88 ---LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFE 147 (167)
T ss_pred ---hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 0013445555666666666666666554221 11122334455555555444444444333
No 321
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.93 E-value=3.1 Score=37.69 Aligned_cols=97 Identities=12% Similarity=0.049 Sum_probs=48.4
Q ss_pred hcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 016027 226 KAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQ 305 (396)
Q Consensus 226 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 305 (396)
+.|+++.|.++..+.. +..-|..|.++....+++..|.+.|.+... |..|+-.+...|+-+....
T Consensus 649 ~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~ 713 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAV 713 (794)
T ss_pred hcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHH
Confidence 4555555555543322 344566666666666666666666654332 2334444555555554444
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 016027 306 VSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFE 343 (396)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 343 (396)
+-....+.|.. |....+|...|++++..+++.
T Consensus 714 la~~~~~~g~~------N~AF~~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 714 LASLAKKQGKN------NLAFLAYFLSGDYEECLELLI 745 (794)
T ss_pred HHHHHHhhccc------chHHHHHHHcCCHHHHHHHHH
Confidence 44444433321 222233455566666665543
No 322
>PRK11619 lytic murein transglycosylase; Provisional
Probab=92.87 E-value=8.6 Score=36.32 Aligned_cols=99 Identities=7% Similarity=-0.043 Sum_probs=57.3
Q ss_pred CHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhH
Q 016027 48 MVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKD 127 (396)
Q Consensus 48 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 127 (396)
.+++...++++-.. .|.....-......+.+.+++......+. ..+.+.......+.+....|+.++
T Consensus 81 ~~~ev~~Fl~~~~~------~P~~~~Lr~~~l~~La~~~~w~~~~~~~~-------~~p~~~~~~c~~~~A~~~~G~~~~ 147 (644)
T PRK11619 81 PAVQVTNFIRANPT------LPPARSLQSRFVNELARREDWRGLLAFSP-------EKPKPVEARCNYYYAKWATGQQQE 147 (644)
T ss_pred CHHHHHHHHHHCCC------CchHHHHHHHHHHHHHHccCHHHHHHhcC-------CCCCCHHHHHHHHHHHHHcCCHHH
Confidence 45555555443332 25445555556666667777776665221 112355556667777777888777
Q ss_pred HHHHHHHHHhCCCCCChhHHHHHHHHHHccCCH
Q 016027 128 AERFWLEMRKENVTPNVVTYGTLVEGYCRLRRV 160 (396)
Q Consensus 128 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 160 (396)
|......+-..|.. ....++.++..+.+.|.+
T Consensus 148 A~~~a~~lW~~g~~-~p~~cd~l~~~~~~~g~l 179 (644)
T PRK11619 148 AWQGAKELWLTGKS-LPNACDKLFSVWQQSGKQ 179 (644)
T ss_pred HHHHHHHHhccCCC-CChHHHHHHHHHHHcCCC
Confidence 77766666555432 455666677666655543
No 323
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=92.85 E-value=0.5 Score=31.45 Aligned_cols=46 Identities=9% Similarity=-0.081 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 016027 302 LAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIR 347 (396)
Q Consensus 302 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 347 (396)
+..+-+..+.....-|++.+..+.+.+|.+.+++..|.++|+-+..
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4445555555555556666666666666666666666666665554
No 324
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=92.69 E-value=3 Score=32.12 Aligned_cols=72 Identities=17% Similarity=0.056 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCCchhhHHHHHHHHHhcCChHHH
Q 016027 161 DRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVC---EPGPTMVTYTSLVKGYCKAGDLEGA 233 (396)
Q Consensus 161 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a 233 (396)
+.|.+.|-.+...+.-.++.....+...| ...+.++++.++.+.++. +..+++..+..|+..+.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 44555555554444333333333333333 345555566555555443 1134555666666666666665555
No 325
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=92.66 E-value=0.26 Score=24.92 Aligned_cols=28 Identities=25% Similarity=0.253 Sum_probs=20.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcc
Q 016027 75 FEILLDSLCKQGRVKAASEYFHKRKELD 102 (396)
Q Consensus 75 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 102 (396)
+..++.++.+.|++++|.+.|+++....
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 4556777777777777877777777653
No 326
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=92.48 E-value=6.5 Score=33.92 Aligned_cols=65 Identities=17% Similarity=0.204 Sum_probs=36.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---chhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 016027 178 NAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGP---TMVTYTSLVKGYCKAGDLEGASKILKMMIS 242 (396)
Q Consensus 178 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 242 (396)
...++..++..+.+.|.++.|...+.++...+... .+.+...-+...-..|+..+|+..++....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34455566666666666666666666665533111 233334444555556666666666666655
No 327
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.15 E-value=6.3 Score=33.02 Aligned_cols=147 Identities=17% Similarity=0.187 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHhcCCCCchhhHHHHHHHHHh--cCC----hHHHHHHHHHHHHCCC---CCChhhHHHHHHHHhccCCH
Q 016027 195 FEEVSGMMERFLVCEPGPTMVTYTSLVKGYCK--AGD----LEGASKILKMMISRGF---LPSPTTYNYFFRYFSKFGKV 265 (396)
Q Consensus 195 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~----~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~ 265 (396)
+++.+.+++.+.+.|...+..+|.+....... ..+ ...|..+++.|.+..+ .++...+..++.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34456778888888887776666553333332 222 5578888999988743 2334445555433 33443
Q ss_pred ----HHHHHHHHHHHHCCCCCCh--hhHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhH
Q 016027 266 ----EDAMNLYRKMIESGYTPDR--LTYHILLKILCKEDK--LDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDE 337 (396)
Q Consensus 266 ----~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 337 (396)
+.++.+|+.+.+.|+..+. .....++..+..... ...+..+++.+.+.++++....|..+.-...-.+..++
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~~ 235 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEEK 235 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchHH
Confidence 4567778888776765433 223333322222222 45778888888888888887777766554433333324
Q ss_pred HHHHHH
Q 016027 338 ASAEFE 343 (396)
Q Consensus 338 a~~~~~ 343 (396)
...-+.
T Consensus 236 ~~~~i~ 241 (297)
T PF13170_consen 236 IVEEIK 241 (297)
T ss_pred HHHHHH
Confidence 433333
No 328
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.13 E-value=4.3 Score=31.08 Aligned_cols=88 Identities=18% Similarity=0.175 Sum_probs=45.1
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCChhHH-----HHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 016027 117 NGWFRSKNVKDAERFWLEMRKENVTPNVVTY-----GTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVE 191 (396)
Q Consensus 117 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 191 (396)
..+...+++++|...++..... |....+ ..|.+.....|.+++|+.+++.....+. .......-.+++..
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~ 171 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLA 171 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHH
Confidence 4455566666666666655432 111122 2234445555666666666655544321 22223334455666
Q ss_pred cCCHHHHHHHHHHHHhcC
Q 016027 192 AGRFEEVSGMMERFLVCE 209 (396)
Q Consensus 192 ~~~~~~a~~~~~~~~~~~ 209 (396)
.|+-++|+.-|++.++.+
T Consensus 172 kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 172 KGDKQEARAAYEKALESD 189 (207)
T ss_pred cCchHHHHHHHHHHHHcc
Confidence 666666666666666543
No 329
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.09 E-value=5.1 Score=36.39 Aligned_cols=151 Identities=17% Similarity=0.186 Sum_probs=105.6
Q ss_pred hhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHc
Q 016027 6 AKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQ 85 (396)
Q Consensus 6 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 85 (396)
.-.|+++.|-.++-.+ | ......++..+..+|-.++|+++ .+|+.- -.....+.
T Consensus 597 vmrrd~~~a~~vLp~I------~----k~~rt~va~Fle~~g~~e~AL~~-------------s~D~d~---rFelal~l 650 (794)
T KOG0276|consen 597 VLRRDLEVADGVLPTI------P----KEIRTKVAHFLESQGMKEQALEL-------------STDPDQ---RFELALKL 650 (794)
T ss_pred hhhccccccccccccC------c----hhhhhhHHhHhhhccchHhhhhc-------------CCChhh---hhhhhhhc
Confidence 3457777775432111 1 33566788888889988888765 222221 22344577
Q ss_pred CChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHH
Q 016027 86 GRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIR 165 (396)
Q Consensus 86 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 165 (396)
|+++.|.++..+.. +..-|..|..+....+++..|.+.|.+... |..|+-.+...|+-+....
T Consensus 651 grl~iA~~la~e~~--------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~ 713 (794)
T KOG0276|consen 651 GRLDIAFDLAVEAN--------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAV 713 (794)
T ss_pred CcHHHHHHHHHhhc--------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHH
Confidence 99999988876643 567899999999999999999999987653 4567777778888877777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 016027 166 LVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERF 205 (396)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 205 (396)
+-....+.| ..|.. ..+|...|+++++.+++..-
T Consensus 714 la~~~~~~g-~~N~A-----F~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 714 LASLAKKQG-KNNLA-----FLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHhhc-ccchH-----HHHHHHcCCHHHHHHHHHhc
Confidence 777777776 33332 23456689999999888765
No 330
>PRK11619 lytic murein transglycosylase; Provisional
Probab=91.91 E-value=11 Score=35.53 Aligned_cols=142 Identities=10% Similarity=0.020 Sum_probs=81.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHH
Q 016027 37 VILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILL 116 (396)
Q Consensus 37 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~ 116 (396)
..-+....+.|++..+.++...+... |..+.+-...+..-.....+++....+++ .++.+.....-...+
T Consensus 37 f~~A~~a~~~g~~~~~~~~~~~l~d~------pL~~yl~y~~L~~~l~~~~~~ev~~Fl~~----~~~~P~~~~Lr~~~l 106 (644)
T PRK11619 37 YQQIKQAWDNRQMDVVEQLMPTLKDY------PLYPYLEYRQLTQDLMNQPAVQVTNFIRA----NPTLPPARSLQSRFV 106 (644)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhccCC------CcHhHHHHHHHHhccccCCHHHHHHHHHH----CCCCchHHHHHHHHH
Confidence 34445567888888887777766432 33222211111111122345555444444 234333444445566
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 016027 117 NGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGR 194 (396)
Q Consensus 117 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 194 (396)
..+.+.+++......+.. .+.+...-...+.+....|+.++|......+-..| ...+.....++..+.+.|.
T Consensus 107 ~~La~~~~w~~~~~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~g~ 178 (644)
T PRK11619 107 NELARREDWRGLLAFSPE-----KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQSGK 178 (644)
T ss_pred HHHHHccCHHHHHHhcCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHcCC
Confidence 667778888887773321 23455555677788888899888877777776665 3345566667766665554
No 331
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=91.89 E-value=4.2 Score=30.47 Aligned_cols=32 Identities=6% Similarity=0.207 Sum_probs=17.2
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHhccCCHHH
Q 016027 236 ILKMMISRGFLPSPTTYNYFFRYFSKFGKVED 267 (396)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 267 (396)
.+..+.+.+++|+...+..++..+.+.|++..
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~ 47 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ 47 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 33444445555555566666666666555443
No 332
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.80 E-value=4.4 Score=33.55 Aligned_cols=99 Identities=15% Similarity=0.183 Sum_probs=51.1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-----CCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChh
Q 016027 176 EPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEP-----GPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPT 250 (396)
Q Consensus 176 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 250 (396)
+....+...++..-....+.+.++..+-++....- ..+..++..+ + -.-++++++.++..=+..|+-||..
T Consensus 61 ~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irl---l-lky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 61 PVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRL---L-LKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHH---H-HccChHHHHHHHhCcchhccccchh
Confidence 33444444444444445556666666555543210 0111222222 1 2234556666666666666666666
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 016027 251 TYNYFFRYFSKFGKVEDAMNLYRKMIES 278 (396)
Q Consensus 251 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 278 (396)
+++.+++.+.+.+++.+|..+.-.++..
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 6666666666666666666666555443
No 333
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=91.75 E-value=1.8 Score=38.96 Aligned_cols=126 Identities=16% Similarity=0.061 Sum_probs=71.9
Q ss_pred HHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHH
Q 016027 19 LDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKR 98 (396)
Q Consensus 19 ~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 98 (396)
+.++.....|- ..+++..+-.+...|+...|..++..+....+.. .+ .....|+..+.+.|-...|..++.+.
T Consensus 596 ~~~~~~~~~p~---w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~---~~-v~~v~la~~~~~~~~~~da~~~l~q~ 668 (886)
T KOG4507|consen 596 FHAINKPNAPI---WLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQ---QD-VPLVNLANLLIHYGLHLDATKLLLQA 668 (886)
T ss_pred HHHhcCCCCCe---EEEeecccceeeecCCcHHHHHHHHHHhccChhh---hc-ccHHHHHHHHHHhhhhccHHHHHHHH
Confidence 44555433443 2234444555566777777777777766653211 11 11344666666667777777777766
Q ss_pred hhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHH
Q 016027 99 KELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYC 155 (396)
Q Consensus 99 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 155 (396)
..... ....++..+.+++....+.+.|++.|+...+.... +...-+.|...-|
T Consensus 669 l~~~~---sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~-~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 669 LAINS---SEPLTFLSLGNAYLALKNISGALEAFRQALKLTTK-CPECENSLKLIRC 721 (886)
T ss_pred Hhhcc---cCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCC-ChhhHHHHHHHHH
Confidence 65532 23445666677777777777777777777665433 4445555544433
No 334
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=91.70 E-value=2.1 Score=28.29 Aligned_cols=42 Identities=12% Similarity=0.170 Sum_probs=19.8
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 016027 165 RLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFL 206 (396)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 206 (396)
+-++.+...++.|++.+..+.+++|.+.+++..|+++++.+.
T Consensus 28 r~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 28 RGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 333333334444455555555555555555555555554443
No 335
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=91.53 E-value=8.4 Score=33.22 Aligned_cols=68 Identities=13% Similarity=0.086 Sum_probs=53.3
Q ss_pred CCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 016027 141 TPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEP---NAIVYNTVIDGLVEAGRFEEVSGMMERFLVC 208 (396)
Q Consensus 141 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 208 (396)
.....+|..++..+.+.|.++.|...+..+...+... .+.+...-+..+-..|+..+|+..++.....
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3456688899999999999999999999988754211 4455556677788899999999999888773
No 336
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=91.50 E-value=3 Score=27.97 Aligned_cols=45 Identities=11% Similarity=0.217 Sum_probs=22.0
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 016027 233 ASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIE 277 (396)
Q Consensus 233 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 277 (396)
..+-++.+...+..|++.+..+.+++|.+.+++..|.++++-+..
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 344444444445555555555555555555555555555555444
No 337
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=91.45 E-value=0.37 Score=22.97 Aligned_cols=22 Identities=18% Similarity=0.105 Sum_probs=12.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHH
Q 016027 36 FVILIRRYARAGMVEAAIWTFE 57 (396)
Q Consensus 36 ~~~l~~~~~~~g~~~~A~~~~~ 57 (396)
...++..+...|++++|..+++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 4445555555566655555543
No 338
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.14 E-value=4.6 Score=29.42 Aligned_cols=53 Identities=13% Similarity=0.174 Sum_probs=36.7
Q ss_pred HcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 016027 84 KQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKEN 139 (396)
Q Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 139 (396)
..++++++..+++.+.-..|+ .+...++...+ +...|+|.+|.++|+++.+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~-~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPN-LKELDMFDGWL--LIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCC-ccccchhHHHH--HHHcCCHHHHHHHHHhhhccC
Confidence 467888888888888776544 23344444443 567888888888888887764
No 339
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=91.02 E-value=0.69 Score=24.89 Aligned_cols=25 Identities=20% Similarity=0.163 Sum_probs=11.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHH
Q 016027 111 VYNILLNGWFRSKNVKDAERFWLEM 135 (396)
Q Consensus 111 ~~~~l~~~~~~~~~~~~a~~~~~~~ 135 (396)
+++.+...|...|++++|..++++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~a 28 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEA 28 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHH
Confidence 3444444444444444444444443
No 340
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.00 E-value=9.6 Score=32.90 Aligned_cols=62 Identities=13% Similarity=0.064 Sum_probs=27.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 016027 75 FEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMR 136 (396)
Q Consensus 75 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 136 (396)
+.-+...|..+|+++.|++.|.++..--...+..+..|..++....-.|+|........+..
T Consensus 153 ~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~ 214 (466)
T KOG0686|consen 153 LEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAE 214 (466)
T ss_pred HHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHH
Confidence 34444555555555555555554332111111223334444444444555554444444443
No 341
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=90.82 E-value=0.47 Score=22.62 Aligned_cols=23 Identities=22% Similarity=0.161 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHH
Q 016027 74 LFEILLDSLCKQGRVKAASEYFH 96 (396)
Q Consensus 74 ~~~~l~~~~~~~~~~~~A~~~~~ 96 (396)
+...+...+...|++++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 34556666777777777766654
No 342
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=90.68 E-value=3.5 Score=33.51 Aligned_cols=131 Identities=14% Similarity=0.089 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhccccc-CCCCc--------hhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCC
Q 016027 35 TFVILIRRYARAGMVEAAIWTFEFANNLDMVK-NFDSG--------ASLFEILLDSLCKQGRVKAASEYFHKRKELDQSW 105 (396)
Q Consensus 35 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~--------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 105 (396)
.+-..+..+.-..+|..|++.-++..+.-... ....+ ......=|++++..|+|.+++.+.-..-+....+
T Consensus 37 lLe~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEkl 116 (309)
T PF07163_consen 37 LLEEAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKL 116 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccC
Confidence 34455556666788888888888766532110 00111 1122233677788888888888777666554444
Q ss_pred CCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHH-----ccCCHHHHHHHH
Q 016027 106 APTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYC-----RLRRVDRAIRLV 167 (396)
Q Consensus 106 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~a~~~~ 167 (396)
+|.+.-.. |-.|.+.+++..+.++-....+..-.-+...|..++..|. -.|.+++|.++.
T Consensus 117 PpkIleLC--ILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 117 PPKILELC--ILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred CHHHHHHH--HHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 45443333 3347788888888888777776532333444666555544 357777777665
No 343
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.63 E-value=8.3 Score=32.05 Aligned_cols=96 Identities=20% Similarity=0.242 Sum_probs=53.0
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHCC---CCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 016027 215 VTYTSLVKGYCKAGDLEGASKILKMMISRG---FLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILL 291 (396)
Q Consensus 215 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 291 (396)
.+...++..-....+++.++..+-.++... ..|+. +-...++.+. .-++++++.++..=+..|+-||..+++.++
T Consensus 65 ~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~~c~l~ 142 (418)
T KOG4570|consen 65 LTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFTFCLLM 142 (418)
T ss_pred eehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHH-ccChHHHHHHHhCcchhccccchhhHHHHH
Confidence 334444444444556666666666665431 11111 1122223222 235556666666666667777777777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 016027 292 KILCKEDKLDLAIQVSKEMKC 312 (396)
Q Consensus 292 ~~~~~~~~~~~a~~~~~~~~~ 312 (396)
..+.+.+++.+|..+.-.+..
T Consensus 143 D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 143 DSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred HHHHhcccHHHHHHHHHHHHH
Confidence 777777777776666665554
No 344
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=90.61 E-value=1.5 Score=35.73 Aligned_cols=60 Identities=12% Similarity=0.099 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 016027 74 LFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMR 136 (396)
Q Consensus 74 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 136 (396)
++......|..+|.+.+|.++.++....+|- +...+..++..+...|+--.+.+-|+.+.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL---~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPL---SEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChh---hhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 4566777788888888888888888888764 77778888888888888767766666653
No 345
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=90.50 E-value=1.4 Score=30.78 Aligned_cols=46 Identities=9% Similarity=-0.075 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 016027 302 LAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIR 347 (396)
Q Consensus 302 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 347 (396)
+..+.+..+....+-|++.+...-++++-+.+|+..|.++|+-+..
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3444444444445555566666666666666666666666555544
No 346
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=90.41 E-value=8.6 Score=31.38 Aligned_cols=88 Identities=9% Similarity=0.105 Sum_probs=49.1
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHh---
Q 016027 150 LVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCK--- 226 (396)
Q Consensus 150 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 226 (396)
-|.+++..++|.+++...-+..+..-+..+.+...-|-.|.+.+++..+.++-..-+...-+.+...|..++..|..
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VL 168 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVL 168 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHH
Confidence 45666777777776665544433221223344455555577777777777666666554333333446555554443
Q ss_pred --cCChHHHHHHH
Q 016027 227 --AGDLEGASKIL 237 (396)
Q Consensus 227 --~~~~~~a~~~~ 237 (396)
.|.+++|+++.
T Consensus 169 lPLG~~~eAeelv 181 (309)
T PF07163_consen 169 LPLGHFSEAEELV 181 (309)
T ss_pred hccccHHHHHHHH
Confidence 47777776665
No 347
>PRK09687 putative lyase; Provisional
Probab=89.84 E-value=10 Score=31.48 Aligned_cols=232 Identities=10% Similarity=0.055 Sum_probs=104.5
Q ss_pred ChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCH----HHHHHHHHHHHHcCCCCCHHHHH
Q 016027 108 TVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRV----DRAIRLVKEMRKEGIEPNAIVYN 183 (396)
Q Consensus 108 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~~ 183 (396)
|..+....+..+...|. .++...+..+... +|...-...+.++...|+. .++...+..+... .++..+-.
T Consensus 36 d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~ 109 (280)
T PRK09687 36 NSLKRISSIRVLQLRGG-QDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRA 109 (280)
T ss_pred CHHHHHHHHHHHHhcCc-chHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHH
Confidence 44444444555544443 2233333333322 2334444444444455542 3455555544333 34444444
Q ss_pred HHHHHHHHcCCH-----HHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 016027 184 TVIDGLVEAGRF-----EEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRY 258 (396)
Q Consensus 184 ~l~~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 258 (396)
..+.++...+.. ..+...+..... .++..+-...+.++.+.++ +.+...+-.+.+. ++...-...+.+
T Consensus 110 ~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~a 182 (280)
T PRK09687 110 SAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFA 182 (280)
T ss_pred HHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHH
Confidence 444444443321 122222222221 2344455555556655555 3445555554442 244444444445
Q ss_pred HhccC-CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhH
Q 016027 259 FSKFG-KVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDE 337 (396)
Q Consensus 259 ~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 337 (396)
+...+ +...+...+..+.. .++..+-...+.++.+.++. .+...+-...+.+ + .....+.++...|+. +
T Consensus 183 Lg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~ 252 (280)
T PRK09687 183 LNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK-T 252 (280)
T ss_pred HhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-h
Confidence 44432 12344444544443 23555555556666666653 3444444444321 1 233455666666663 5
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 016027 338 ASAEFEDMIRRGLVPHYLTFKRLNDEF 364 (396)
Q Consensus 338 a~~~~~~~~~~~~~p~~~~~~~l~~~~ 364 (396)
|...+..+.+. .||..+-...+.+|
T Consensus 253 a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 253 LLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred HHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 66666666553 23555544444444
No 348
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=89.79 E-value=0.11 Score=37.94 Aligned_cols=84 Identities=12% Similarity=0.156 Sum_probs=50.3
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 016027 255 FFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYK 334 (396)
Q Consensus 255 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 334 (396)
++..+.+.+.+.....+++.+...+...+....+.++..|++.+..+....+++.. +..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 45666666777777777777776554455666777777777776666666665511 11223445566666666
Q ss_pred hhHHHHHHHHH
Q 016027 335 FDEASAEFEDM 345 (396)
Q Consensus 335 ~~~a~~~~~~~ 345 (396)
+++|.-++.++
T Consensus 86 ~~~a~~Ly~~~ 96 (143)
T PF00637_consen 86 YEEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHc
Confidence 66666666554
No 349
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.78 E-value=0.22 Score=41.25 Aligned_cols=87 Identities=17% Similarity=0.033 Sum_probs=37.1
Q ss_pred cCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHH
Q 016027 85 QGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAI 164 (396)
Q Consensus 85 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 164 (396)
.|.++.|++.|..++..+|+ ....|..-.+.+.+.+++..|++=++..++.+.. +..-|-.--.+....|++++|.
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~---~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~D-sa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPP---LAILYAKRASVFLKLKKPNAAIRDCDFAIEINPD-SAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred CcchhhhhcccccccccCCc---hhhhcccccceeeeccCCchhhhhhhhhhccCcc-cccccchhhHHHHHhhchHHHH
Confidence 34455555555555444322 3444444444455555555555544444443211 1112222222233344555555
Q ss_pred HHHHHHHHcCC
Q 016027 165 RLVKEMRKEGI 175 (396)
Q Consensus 165 ~~~~~~~~~~~ 175 (396)
..+....+.++
T Consensus 203 ~dl~~a~kld~ 213 (377)
T KOG1308|consen 203 HDLALACKLDY 213 (377)
T ss_pred HHHHHHHhccc
Confidence 55555544443
No 350
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=89.69 E-value=0.73 Score=29.08 Aligned_cols=48 Identities=10% Similarity=-0.074 Sum_probs=22.6
Q ss_pred hccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHH
Q 016027 7 KAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWT 55 (396)
Q Consensus 7 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~ 55 (396)
...+-++|+..+..+++....|.. -..++..++++|...|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~-rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDRED-RFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555554332221 123444555555555555554443
No 351
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=89.60 E-value=12 Score=31.88 Aligned_cols=99 Identities=8% Similarity=-0.010 Sum_probs=60.1
Q ss_pred CCchhHHHHHHHHHHHcCC------------hHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 016027 69 DSGASLFEILLDSLCKQGR------------VKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMR 136 (396)
Q Consensus 69 ~~~~~~~~~l~~~~~~~~~------------~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 136 (396)
|.|..+|..++..--..-. .+.-+.+++++.+.+|+ +...+...+..+.+..+.++..+.++++.
T Consensus 16 P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~---~~~L~l~~l~~~~~~~~~~~l~~~we~~l 92 (321)
T PF08424_consen 16 PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPD---SERLLLGYLEEGEKVWDSEKLAKKWEELL 92 (321)
T ss_pred cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 7777777777665433321 34556677777766443 66667777777777777777777777777
Q ss_pred hCCCCCChhHHHHHHHHHHc---cCCHHHHHHHHHHHH
Q 016027 137 KENVTPNVVTYGTLVEGYCR---LRRVDRAIRLVKEMR 171 (396)
Q Consensus 137 ~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~ 171 (396)
..... +...|...+..... .-.++....+|.+.+
T Consensus 93 ~~~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l 129 (321)
T PF08424_consen 93 FKNPG-SPELWREYLDFRQSNFASFTVSDVRDVYEKCL 129 (321)
T ss_pred HHCCC-ChHHHHHHHHHHHHHhccCcHHHHHHHHHHHH
Confidence 66322 56666666655443 123445555554443
No 352
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=89.59 E-value=0.78 Score=39.99 Aligned_cols=104 Identities=20% Similarity=0.054 Sum_probs=75.2
Q ss_pred hhhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHH
Q 016027 3 KVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSL 82 (396)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 82 (396)
+.+.+.+.|+.|+.++.++++. .|+. ...|..=..++.+.+++..|+.-+.++++.. |.....|..-+.++
T Consensus 12 n~~l~~~~fd~avdlysKaI~l--dpnc--a~~~anRa~a~lK~e~~~~Al~Da~kaie~d-----P~~~K~Y~rrg~a~ 82 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIEL--DPNC--AIYFANRALAHLKVESFGGALHDALKAIELD-----PTYIKAYVRRGTAV 82 (476)
T ss_pred hhhcccchHHHHHHHHHHHHhc--CCcc--eeeechhhhhheeechhhhHHHHHHhhhhcC-----chhhheeeeccHHH
Confidence 4566778889999999998884 5652 2334444577888889999998888888875 66677777777888
Q ss_pred HHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHH
Q 016027 83 CKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGW 119 (396)
Q Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 119 (396)
.+.+.+.+|+..|+..... .|+..-....+.-|
T Consensus 83 m~l~~~~~A~~~l~~~~~l----~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 83 MALGEFKKALLDLEKVKKL----APNDPDATRKIDEC 115 (476)
T ss_pred HhHHHHHHHHHHHHHhhhc----CcCcHHHHHHHHHH
Confidence 8888888888888887765 34544444444433
No 353
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=89.13 E-value=0.94 Score=22.06 Aligned_cols=25 Identities=28% Similarity=0.307 Sum_probs=11.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHh
Q 016027 75 FEILLDSLCKQGRVKAASEYFHKRK 99 (396)
Q Consensus 75 ~~~l~~~~~~~~~~~~A~~~~~~~~ 99 (396)
+..++..+...|+++.|...|+...
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3344444444444444444444443
No 354
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=88.99 E-value=4.7 Score=26.97 Aligned_cols=50 Identities=12% Similarity=0.050 Sum_probs=26.9
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcc
Q 016027 328 LLCRMYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFKKRGMTALAQKLCNVMSSV 383 (396)
Q Consensus 328 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 383 (396)
.+...|++++|..+.+.. ..||...|..| +-.+.|..+++...+.+|...
T Consensus 48 SLmNrG~Yq~Al~l~~~~----~~pdlepw~AL--ce~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKL----CYPDLEPWLAL--CEWRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHccchHHHHHHhcCCC----CCchHHHHHHH--HHHhhccHHHHHHHHHHHHhC
Confidence 355566666666655443 25666655544 234556655555555555443
No 355
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=88.77 E-value=5.3 Score=31.25 Aligned_cols=77 Identities=17% Similarity=0.186 Sum_probs=56.2
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCChhhHHHHHHH
Q 016027 251 TYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGC--DIDLDTSTMLIHL 328 (396)
Q Consensus 251 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~ 328 (396)
|.+..++.+.+.+...+++...++-.+.+ +.|..+-..+++.++-.|++++|..-++-.-.... .+....|..++.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 45556677778889999999988877764 33666777788899999999999988877766532 2344566666654
No 356
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=88.52 E-value=11 Score=30.11 Aligned_cols=95 Identities=13% Similarity=-0.041 Sum_probs=58.3
Q ss_pred hhhccCchhHHHHHHHHhC------CCCCCCCC--------ChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCC
Q 016027 5 LAKAKEFDSAWCLLLDKIG------GHEVPDFV--------SKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDS 70 (396)
Q Consensus 5 ~~~~g~~~~A~~~~~~~~~------~~~~p~~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 70 (396)
+.+.|++.+|..-|.+++. ....|-.+ ....+....+++...|++-++++.-..+.... |.
T Consensus 188 lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~-----~~ 262 (329)
T KOG0545|consen 188 LFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHH-----PG 262 (329)
T ss_pred hhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcC-----Cc
Confidence 5577888888888877652 11122211 01123344556666677777777776666653 66
Q ss_pred chhHHHHHHHHHHHcCChHHHHHHHHHHhhccCC
Q 016027 71 GASLFEILLDSLCKQGRVKAASEYFHKRKELDQS 104 (396)
Q Consensus 71 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 104 (396)
+..+|..-+.+.+..-+..+|..=|.++...+|.
T Consensus 263 nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 263 NVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPS 296 (329)
T ss_pred hHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChh
Confidence 6777777777777777777777777777666443
No 357
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=88.50 E-value=1.2 Score=38.98 Aligned_cols=109 Identities=17% Similarity=0.052 Sum_probs=81.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHH
Q 016027 36 FVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNIL 115 (396)
Q Consensus 36 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 115 (396)
+..-+..+...+.++.|+.++.++++.+ |.....|..-..++.+.+++..|+.=+.++.+.+|. -...|..-
T Consensus 7 ~k~ean~~l~~~~fd~avdlysKaI~ld-----pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~---~~K~Y~rr 78 (476)
T KOG0376|consen 7 LKNEANEALKDKVFDVAVDLYSKAIELD-----PNCAIYFANRALAHLKVESFGGALHDALKAIELDPT---YIKAYVRR 78 (476)
T ss_pred hhhHHhhhcccchHHHHHHHHHHHHhcC-----CcceeeechhhhhheeechhhhHHHHHHhhhhcCch---hhheeeec
Confidence 3345666778899999999999999985 556666666778999999999999988888887533 34455555
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHH
Q 016027 116 LNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGY 154 (396)
Q Consensus 116 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 154 (396)
..++.+.+.+.+|+..|+.... +.|+..-....+.-|
T Consensus 79 g~a~m~l~~~~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 79 GTAVMALGEFKKALLDLEKVKK--LAPNDPDATRKIDEC 115 (476)
T ss_pred cHHHHhHHHHHHHHHHHHHhhh--cCcCcHHHHHHHHHH
Confidence 5667777888888888887766 467776666665544
No 358
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=88.44 E-value=0.86 Score=25.18 Aligned_cols=23 Identities=17% Similarity=0.153 Sum_probs=14.2
Q ss_pred HHHHHHHcCCchHHHHHHHHHhc
Q 016027 360 LNDEFKKRGMTALAQKLCNVMSS 382 (396)
Q Consensus 360 l~~~~~~~g~~~~A~~~~~~~~~ 382 (396)
+..+|...|+.+.|.++++++..
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 45566666666666666666554
No 359
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=88.25 E-value=11 Score=29.78 Aligned_cols=24 Identities=17% Similarity=0.108 Sum_probs=12.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhC
Q 016027 115 LLNGWFRSKNVKDAERFWLEMRKE 138 (396)
Q Consensus 115 l~~~~~~~~~~~~a~~~~~~~~~~ 138 (396)
+.....+.|++++|.+.|.++...
T Consensus 171 igeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 171 IGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHcC
Confidence 344444555555555555555544
No 360
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=87.76 E-value=1.3 Score=21.48 Aligned_cols=28 Identities=25% Similarity=0.239 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 016027 35 TFVILIRRYARAGMVEAAIWTFEFANNL 62 (396)
Q Consensus 35 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 62 (396)
+|..++..+...|++++|...|+.+.+.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 6888999999999999999999988775
No 361
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=87.67 E-value=6.8 Score=30.99 Aligned_cols=28 Identities=7% Similarity=0.093 Sum_probs=16.4
Q ss_pred HHHHHHHcCCchHHHHHHHHHhccchhh
Q 016027 360 LNDEFKKRGMTALAQKLCNVMSSVPRSM 387 (396)
Q Consensus 360 l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 387 (396)
+.....+.|+.++|.++|.++...+...
T Consensus 171 igeL~rrlg~~~eA~~~fs~vi~~~~~s 198 (214)
T PF09986_consen 171 IGELNRRLGNYDEAKRWFSRVIGSKKAS 198 (214)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence 3344556677777777776665544433
No 362
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=87.28 E-value=3.4 Score=27.53 Aligned_cols=57 Identities=18% Similarity=0.092 Sum_probs=33.4
Q ss_pred hhccCchhHHHHHHHHhCCCCCCCCC-----ChhHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 016027 6 AKAKEFDSAWCLLLDKIGGHEVPDFV-----SKDTFVILIRRYARAGMVEAAIWTFEFANNL 62 (396)
Q Consensus 6 ~~~g~~~~A~~~~~~~~~~~~~p~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 62 (396)
.+.|++.+|.+.+.+........... -..+...++......|++++|.+.++++.+.
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46778888865554444322111100 0234556667777778888888888777765
No 363
>PRK10941 hypothetical protein; Provisional
Probab=87.05 E-value=14 Score=30.43 Aligned_cols=76 Identities=8% Similarity=-0.097 Sum_probs=44.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCChhHHHHHHHH
Q 016027 75 FEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKEN-VTPNVVTYGTLVEG 153 (396)
Q Consensus 75 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~ 153 (396)
...+-.+|.+.++++.|+.+.+.+....|+ +..-+..-...|.+.|.+..|..=++..++.- -.|+.......+..
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~---dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~ 260 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPE---DPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHS 260 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 344556666777777777777777666544 44455555666677777777777666665442 23344444444443
No 364
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=87.04 E-value=1.8 Score=23.96 Aligned_cols=23 Identities=22% Similarity=0.296 Sum_probs=11.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHH
Q 016027 325 LIHLLCRMYKFDEASAEFEDMIR 347 (396)
Q Consensus 325 l~~~~~~~~~~~~a~~~~~~~~~ 347 (396)
+..+|...|+.+.|.+++++.+.
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 34455555555555555555554
No 365
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=86.70 E-value=16 Score=29.76 Aligned_cols=213 Identities=12% Similarity=0.121 Sum_probs=0.0
Q ss_pred HccCCHHHHHHHHHHHHHcCCCCCHHHHHHH---HHHHHHcCCHHHHHHHHHHHHhc-----CCCCchhhHHHHHHHHHh
Q 016027 155 CRLRRVDRAIRLVKEMRKEGIEPNAIVYNTV---IDGLVEAGRFEEVSGMMERFLVC-----EPGPTMVTYTSLVKGYCK 226 (396)
Q Consensus 155 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~ 226 (396)
.+..++++|+.-|++.++..-....+-|.++ +....+.|++++....|.+++.. ...-+..+.+.++...+.
T Consensus 38 l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiSt 117 (440)
T KOG1464|consen 38 LKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYIST 117 (440)
T ss_pred ccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhh
Q ss_pred cCChHHHHHHHHHHHHC-----CCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC-----------hhhHHHH
Q 016027 227 AGDLEGASKILKMMISR-----GFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPD-----------RLTYHIL 290 (396)
Q Consensus 227 ~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----------~~~~~~l 290 (396)
..+.+.....++.-... +-..--.|-..+...|...+.+.+..++++++..+--.-+ ...|..-
T Consensus 118 S~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlE 197 (440)
T KOG1464|consen 118 SKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALE 197 (440)
T ss_pred hhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhH
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH-----hcCChhHHHHHHHHHHH----CCCCCCHHH---HH
Q 016027 291 LKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLC-----RMYKFDEASAEFEDMIR----RGLVPHYLT---FK 358 (396)
Q Consensus 291 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~a~~~~~~~~~----~~~~p~~~~---~~ 358 (396)
++.|....+-.....++++...............+|+-|. +.|.+++|..-|-+..+ .| .|-..+ |.
T Consensus 198 IQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsG-spRRttCLKYL 276 (440)
T KOG1464|consen 198 IQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESG-SPRRTTCLKYL 276 (440)
T ss_pred hhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccC-CcchhHHHHHH
Q ss_pred HHHHHHHHcC
Q 016027 359 RLNDEFKKRG 368 (396)
Q Consensus 359 ~l~~~~~~~g 368 (396)
.+...+.++|
T Consensus 277 VLANMLmkS~ 286 (440)
T KOG1464|consen 277 VLANMLMKSG 286 (440)
T ss_pred HHHHHHHHcC
No 366
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=86.46 E-value=0.33 Score=35.50 Aligned_cols=128 Identities=11% Similarity=0.184 Sum_probs=72.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 016027 220 LVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDK 299 (396)
Q Consensus 220 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 299 (396)
++..+.+.+.++....+++.+...+...+....+.++..|++.+..++..++++. . +..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~---~----~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT---S----NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS---S----SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc---c----cccCHHHHHHHHHhcch
Confidence 4556666777777777888887665555677778888888888776777766651 1 11223445666677777
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 016027 300 LDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFKKRGM 369 (396)
Q Consensus 300 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 369 (396)
++++..++.++-...-. +..+...++++.|.+.+.+ .++...|..++..|...+.
T Consensus 86 ~~~a~~Ly~~~~~~~~a---------l~i~~~~~~~~~a~e~~~~------~~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 86 YEEAVYLYSKLGNHDEA---------LEILHKLKDYEEAIEYAKK------VDDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp HHHHHHHHHCCTTHTTC---------SSTSSSTHCSCCCTTTGGG------CSSSHHHHHHHHHHCTSTC
T ss_pred HHHHHHHHHHcccHHHH---------HHHHHHHccHHHHHHHHHh------cCcHHHHHHHHHHHHhcCc
Confidence 77777666554322110 1112333445555432221 2345566666666655544
No 367
>PF13934 ELYS: Nuclear pore complex assembly
Probab=86.02 E-value=8.3 Score=30.82 Aligned_cols=107 Identities=17% Similarity=0.159 Sum_probs=0.0
Q ss_pred hhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHH
Q 016027 5 LAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCK 84 (396)
Q Consensus 5 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 84 (396)
+..++++++|...+-+--- .|+ -...+++++...|+.+.|+.+++..... ..+......+... ..
T Consensus 88 ~LD~~~~~~A~~~L~~ps~---~~~-----~~~~Il~~L~~~~~~~lAL~y~~~~~p~------l~s~~~~~~~~~~-La 152 (226)
T PF13934_consen 88 LLDHGDFEEALELLSHPSL---IPW-----FPDKILQALLRRGDPKLALRYLRAVGPP------LSSPEALTLYFVA-LA 152 (226)
T ss_pred HhChHhHHHHHHHhCCCCC---Ccc-----cHHHHHHHHHHCCChhHHHHHHHhcCCC------CCCHHHHHHHHHH-HH
Q ss_pred cCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHH----hcCChhHHHHH
Q 016027 85 QGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWF----RSKNVKDAERF 131 (396)
Q Consensus 85 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~a~~~ 131 (396)
++.+.+|..+-+......+ ...+..++..+. +.+..++...+
T Consensus 153 ~~~v~EAf~~~R~~~~~~~-----~~l~e~l~~~~~~~~~~~~~~~~Ll~L 198 (226)
T PF13934_consen 153 NGLVTEAFSFQRSYPDELR-----RRLFEQLLEHCLEECARSGRLDELLSL 198 (226)
T ss_pred cCCHHHHHHHHHhCchhhh-----HHHHHHHHHHHHHHhhhhhHHHHHHhC
No 368
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=85.93 E-value=12 Score=30.62 Aligned_cols=132 Identities=11% Similarity=0.006 Sum_probs=72.8
Q ss_pred hhhhhhccCchhHHHHHHHHhCCCCCCCCC----ChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHH
Q 016027 2 IKVLAKAKEFDSAWCLLLDKIGGHEVPDFV----SKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEI 77 (396)
Q Consensus 2 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (396)
++-..+..++++|+..|.+++..+...+.- -..+...+...|...|+...-.+.............-|....+...
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiirt 89 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRT 89 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHH
Confidence 455677889999999999999876533311 1346778899999999988766666554443221122333333344
Q ss_pred HHHHHHHc-CChHHHHHHHHHHhhccCCCCCCh-----HHHHHHHHHHHhcCChhHHHHHHHHH
Q 016027 78 LLDSLCKQ-GRVKAASEYFHKRKELDQSWAPTV-----RVYNILLNGWFRSKNVKDAERFWLEM 135 (396)
Q Consensus 78 l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~ 135 (396)
|+..+-.. ..++.-+++.....+. ..+.+. ..-..++..+.+.|++.+|+.+...+
T Consensus 90 Liekf~~~~dsl~dqi~v~~~~iew--A~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~l 151 (421)
T COG5159 90 LIEKFPYSSDSLEDQIKVLTALIEW--ADREKRKFLRLELECKLIYLLYKTGKYSDALALINPL 151 (421)
T ss_pred HHHhcCCCCccHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 44433222 2344444444433322 000011 11234566677777777777655433
No 369
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.92 E-value=16 Score=29.10 Aligned_cols=20 Identities=25% Similarity=0.209 Sum_probs=14.3
Q ss_pred HHHHcCCHHHHHHHHHHHhh
Q 016027 42 RYARAGMVEAAIWTFEFANN 61 (396)
Q Consensus 42 ~~~~~g~~~~A~~~~~~~~~ 61 (396)
.+.-.+++++|.++|.++-.
T Consensus 23 lfgg~~k~eeAadl~~~Aan 42 (288)
T KOG1586|consen 23 LFGGSNKYEEAAELYERAAN 42 (288)
T ss_pred ccCCCcchHHHHHHHHHHHH
Confidence 44556688888888886654
No 370
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=85.88 E-value=0.53 Score=39.10 Aligned_cols=122 Identities=16% Similarity=0.034 Sum_probs=84.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHH
Q 016027 40 IRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGW 119 (396)
Q Consensus 40 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 119 (396)
+.-....|.+++|++.|..++..+ |+...+|..-.+++.+.+++..|++=+..+.+.++. +..-|-.-..+.
T Consensus 121 A~eAln~G~~~~ai~~~t~ai~ln-----p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~D---sa~~ykfrg~A~ 192 (377)
T KOG1308|consen 121 ASEALNDGEFDTAIELFTSAIELN-----PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPD---SAKGYKFRGYAE 192 (377)
T ss_pred HHHHhcCcchhhhhcccccccccC-----CchhhhcccccceeeeccCCchhhhhhhhhhccCcc---cccccchhhHHH
Confidence 334457888999999999998885 778888888889999999999999988888877544 333344444445
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHH
Q 016027 120 FRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMR 171 (396)
Q Consensus 120 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 171 (396)
.-.|+|++|.+.+....+.+..+....+.. ...-..+..++-...+++..
T Consensus 193 rllg~~e~aa~dl~~a~kld~dE~~~a~lK--eV~p~a~ki~e~~~k~er~~ 242 (377)
T KOG1308|consen 193 RLLGNWEEAAHDLALACKLDYDEANSATLK--EVFPNAGKIEEHRRKYERAR 242 (377)
T ss_pred HHhhchHHHHHHHHHHHhccccHHHHHHHH--HhccchhhhhhchhHHHHHH
Confidence 557899999999999988876665554432 23333344444334444433
No 371
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=84.94 E-value=4.1 Score=25.86 Aligned_cols=48 Identities=6% Similarity=0.006 Sum_probs=28.5
Q ss_pred hcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCchHHHHHHH
Q 016027 331 RMYKFDEASAEFEDMIRRGLVPH--YLTFKRLNDEFKKRGMTALAQKLCN 378 (396)
Q Consensus 331 ~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~ 378 (396)
...+.++|+..|...++.-..|. ..++..++.+|+..|++++++++.-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~ 67 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFAL 67 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777666432221 1345566677777777777666543
No 372
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=84.79 E-value=12 Score=26.78 Aligned_cols=67 Identities=12% Similarity=0.095 Sum_probs=31.8
Q ss_pred ChhhHHHHHHHHHhcCC---hhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCchHHHHHHHHHhccch
Q 016027 318 DLDTSTMLIHLLCRMYK---FDEASAEFEDMIRRGLVPH--YLTFKRLNDEFKKRGMTALAQKLCNVMSSVPR 385 (396)
Q Consensus 318 ~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 385 (396)
+..+-..+.+++.++.+ ..+.+.+++++.+.. .|+ ......|.-++.+.|++++++++.+.+.+..+
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~-~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~ 102 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSA-HPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEP 102 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhc-CcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCC
Confidence 44444455555555443 334445555555421 121 12223344455566666666666666544443
No 373
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=84.41 E-value=5.7 Score=23.07 Aligned_cols=28 Identities=14% Similarity=0.027 Sum_probs=17.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcc
Q 016027 36 FVILIRRYARAGMVEAAIWTFEFANNLD 63 (396)
Q Consensus 36 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 63 (396)
++.++-++.+.|++++|.+..+.+.+..
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~e 31 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIE 31 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 4455666667777777777777766653
No 374
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=84.38 E-value=31 Score=31.11 Aligned_cols=179 Identities=9% Similarity=0.059 Sum_probs=113.2
Q ss_pred CChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 016027 107 PTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVI 186 (396)
Q Consensus 107 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 186 (396)
.|.....+++..+..+..+.-+..+..+|..-| .+...+..++.+|... ..+.-..+++++.+..+ .|...-..+.
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHH
Confidence 455566777888888888888888888888764 4677888888888877 55777788888877743 2333333444
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCC-----chhhHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCChhhHHHHHHHHh
Q 016027 187 DGLVEAGRFEEVSGMMERFLVCEPGP-----TMVTYTSLVKGYCKAGDLEGASKILKMMISR-GFLPSPTTYNYFFRYFS 260 (396)
Q Consensus 187 ~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~ 260 (396)
..|-+ ++.+.+..+|.++...-++. -...|..+...- ..+.+....+...+... |..--...+..+-.-|.
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 44444 77788888888776653321 123455444322 34566666666666543 33333445555556777
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 016027 261 KFGKVEDAMNLYRKMIESGYTPDRLTYHILLKI 293 (396)
Q Consensus 261 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 293 (396)
...++.+|++++..+.+.+- -|...-..++.-
T Consensus 217 ~~eN~~eai~Ilk~il~~d~-k~~~ar~~~i~~ 248 (711)
T COG1747 217 ENENWTEAIRILKHILEHDE-KDVWARKEIIEN 248 (711)
T ss_pred cccCHHHHHHHHHHHhhhcc-hhhhHHHHHHHH
Confidence 88888888888888777642 244444444443
No 375
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=84.26 E-value=11 Score=33.45 Aligned_cols=148 Identities=15% Similarity=0.005 Sum_probs=87.1
Q ss_pred hhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCC----chhHHHHHH
Q 016027 4 VLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDS----GASLFEILL 79 (396)
Q Consensus 4 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~~~~~l~ 79 (396)
.|.+..++.-+..-...++... .+ +..+...-.+.+.-.|++.+|.+++...--.....+... .-..++.++
T Consensus 215 ~llq~~~Lk~~krevK~vmn~a--~~--s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlG 290 (696)
T KOG2471|consen 215 FLLQTRNLKLAKREVKHVMNIA--QD--SSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLG 290 (696)
T ss_pred HHHHHHHHHHHHHhhhhhhhhc--CC--CcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcc
Confidence 3444445555544444443321 12 233455556667788999999888775543221111111 223357777
Q ss_pred HHHHHcCChHHHHHHHHHHhh-----ccCCCCCCh-----------HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 016027 80 DSLCKQGRVKAASEYFHKRKE-----LDQSWAPTV-----------RVYNILLNGWFRSKNVKDAERFWLEMRKENVTPN 143 (396)
Q Consensus 80 ~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~~-----------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 143 (396)
-.+.+.|.+..+..+|.++.+ ...+++|.. .+|| ..-.+...|++-.|.+.|.+..+. +..+
T Consensus 291 cIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYN-cG~~~Lh~grPl~AfqCf~~av~v-fh~n 368 (696)
T KOG2471|consen 291 CIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYN-CGLLYLHSGRPLLAFQCFQKAVHV-FHRN 368 (696)
T ss_pred eEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHh-hhHHHHhcCCcHHHHHHHHHHHHH-HhcC
Confidence 777778888888888877664 112333321 2233 334567789999999999887765 4558
Q ss_pred hhHHHHHHHHHHcc
Q 016027 144 VVTYGTLVEGYCRL 157 (396)
Q Consensus 144 ~~~~~~l~~~~~~~ 157 (396)
+..|..|..+|...
T Consensus 369 PrlWLRlAEcCima 382 (696)
T KOG2471|consen 369 PRLWLRLAECCIMA 382 (696)
T ss_pred cHHHHHHHHHHHHH
Confidence 88898888888643
No 376
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=83.95 E-value=12 Score=34.17 Aligned_cols=106 Identities=10% Similarity=-0.031 Sum_probs=60.0
Q ss_pred ccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCC
Q 016027 8 AKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGR 87 (396)
Q Consensus 8 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 87 (396)
+|+.-+|+..+...+.- .|+..-..+...++..+-+.|...+|--++..+..... .-..-+..+.++++..++
T Consensus 226 ~G~~~~A~~Ca~~a~hf--~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~-----~~t~n~y~l~~i~aml~~ 298 (886)
T KOG4507|consen 226 KGEPYQAVECAMRALHF--SSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDAD-----FFTSNYYTLGNIYAMLGE 298 (886)
T ss_pred cCChhhhhHHHHHHhhh--CCcccccchhhhHHHHHHHcccccchhheeehhccCCc-----cccccceeHHHHHHHHhh
Confidence 56666666655555432 22222233555666666666666666655554444321 111115556677777777
Q ss_pred hHHHHHHHHHHhhccCCCCCChHHHHHHHHHHH
Q 016027 88 VKAASEYFHKRKELDQSWAPTVRVYNILLNGWF 120 (396)
Q Consensus 88 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 120 (396)
+......|+...+.+|+..|....-...|++..
T Consensus 299 ~N~S~~~ydha~k~~p~f~q~~~q~~~~ISC~~ 331 (886)
T KOG4507|consen 299 YNHSVLCYDHALQARPGFEQAIKQRKHAISCQQ 331 (886)
T ss_pred hhhhhhhhhhhhccCcchhHHHHHHHHHHHHHH
Confidence 777777777777776666666655555555543
No 377
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.10 E-value=44 Score=31.87 Aligned_cols=153 Identities=10% Similarity=0.105 Sum_probs=88.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHH
Q 016027 40 IRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGW 119 (396)
Q Consensus 40 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 119 (396)
+.-+.+.+.+++|+++-+........ .....+...++..+.-.|++++|-...-+|... +..-|...+..+
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~---~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn------~~~eWe~~V~~f 433 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEER---FVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN------NAAEWELWVFKF 433 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccc---cchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc------hHHHHHHHHHHh
Confidence 55677788888888887765554210 013456777888888888888888888777653 566677777666
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHH--------------H---HcCCCCCHHHH
Q 016027 120 FRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEM--------------R---KEGIEPNAIVY 182 (396)
Q Consensus 120 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--------------~---~~~~~~~~~~~ 182 (396)
...++......+ +.......+...|..++-.+.. .+...-.++.... . +.. ..+...-
T Consensus 434 ~e~~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~-Se~~~L~ 508 (846)
T KOG2066|consen 434 AELDQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQN-SESTALL 508 (846)
T ss_pred ccccccchhhcc---CCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhh-ccchhHH
Confidence 666665443332 2222222345566666655554 2222222111111 0 000 1122333
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 016027 183 NTVIDGLVEAGRFEEVSGMMERFL 206 (396)
Q Consensus 183 ~~l~~~~~~~~~~~~a~~~~~~~~ 206 (396)
..|+..|...++++.|+.++-.+.
T Consensus 509 e~La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 509 EVLAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHHHHHHHccChHHHHHHHHhcc
Confidence 457778888888888888877664
No 378
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=82.75 E-value=36 Score=30.60 Aligned_cols=103 Identities=14% Similarity=0.089 Sum_probs=75.5
Q ss_pred CCChhhH-HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh--cCChhHHHHHHHHHHH-CCCCCCHHH
Q 016027 281 TPDRLTY-HILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCR--MYKFDEASAEFEDMIR-RGLVPHYLT 356 (396)
Q Consensus 281 ~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~-~~~~p~~~~ 356 (396)
.|+..++ +.++..+.+.|..++|..++..+... ++|+...|..++..-.. .-+...+.++++.|.. .| -|+..
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~l 532 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDL 532 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHH
Confidence 4555444 45677788889999999999999876 46688888888764322 2237888999999876 66 57778
Q ss_pred HHHHHHHHHHcCCchHHHHHHHH-Hhccchh
Q 016027 357 FKRLNDEFKKRGMTALAQKLCNV-MSSVPRS 386 (396)
Q Consensus 357 ~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~ 386 (396)
|...+.--...|..+.+-.++.+ |....++
T Consensus 533 w~~y~~~e~~~g~~en~~~~~~ra~ktl~~~ 563 (568)
T KOG2396|consen 533 WMDYMKEELPLGRPENCGQIYWRAMKTLQGE 563 (568)
T ss_pred HHHHHHhhccCCCcccccHHHHHHHHhhChh
Confidence 88888777789999988777766 4444433
No 379
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=82.71 E-value=11 Score=30.62 Aligned_cols=60 Identities=17% Similarity=0.109 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHh----CC-CCCChhHHHHHHHHHHccCCHHHHHHHHHHH
Q 016027 111 VYNILLNGWFRSKNVKDAERFWLEMRK----EN-VTPNVVTYGTLVEGYCRLRRVDRAIRLVKEM 170 (396)
Q Consensus 111 ~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 170 (396)
....++.-|.+.|++++|.++|+.+.. .| ..+...+...+..++.+.|+.+..+.+.-++
T Consensus 180 l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 180 LSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 344566667777777777777776632 12 3344555666667777777777666655444
No 380
>PRK09687 putative lyase; Provisional
Probab=82.14 E-value=28 Score=28.99 Aligned_cols=235 Identities=9% Similarity=-0.055 Sum_probs=143.7
Q ss_pred CCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCCh----hHHHHHHHHHHhCCCCCCh
Q 016027 69 DSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNV----KDAERFWLEMRKENVTPNV 144 (396)
Q Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~ 144 (396)
.++..+....+..+...|. +++...+..+... +|...-...+.++.+.|+. .++...+..+... .++.
T Consensus 34 d~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~-----~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~ 105 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGG-QDVFRLAIELCSS-----KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSA 105 (280)
T ss_pred CCCHHHHHHHHHHHHhcCc-chHHHHHHHHHhC-----CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCH
Confidence 4455666667777777775 3344444444332 3566666667777777763 4677777766443 3455
Q ss_pred hHHHHHHHHHHccCC-----HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHH
Q 016027 145 VTYGTLVEGYCRLRR-----VDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTS 219 (396)
Q Consensus 145 ~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 219 (396)
..-...+.++...+. ...+...+..... .++..+-...+.++.+.++ +.++..+-.+... ++..+-..
T Consensus 106 ~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~ 178 (280)
T PRK09687 106 CVRASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNW 178 (280)
T ss_pred HHHHHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHH
Confidence 555555555555432 1233344433333 3466666677788888776 4566766666652 45556666
Q ss_pred HHHHHHhcC-ChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 016027 220 LVKGYCKAG-DLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKED 298 (396)
Q Consensus 220 l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 298 (396)
.+.++.+.+ +...+...+..+.. .++..+-...+.++.+.++. .+...+-+..+.+ + .....+.++...|
T Consensus 179 A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig 249 (280)
T PRK09687 179 AAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELG 249 (280)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcC
Confidence 666666653 24567777766664 34777788888888888884 5666666655543 2 2346777888888
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 016027 299 KLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLC 330 (396)
Q Consensus 299 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 330 (396)
.. +|...+..+.+. .+|..+-...+.++.
T Consensus 250 ~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 250 DK-TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred CH-hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 85 688888888764 346666665555543
No 381
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=81.85 E-value=9.5 Score=25.37 Aligned_cols=59 Identities=17% Similarity=0.032 Sum_probs=35.6
Q ss_pred HHHcCCHHHHHHHHHHHhhcccccCCCC----chhHHHHHHHHHHHcCChHHHHHHHHHHhhc
Q 016027 43 YARAGMVEAAIWTFEFANNLDMVKNFDS----GASLFEILLDSLCKQGRVKAASEYFHKRKEL 101 (396)
Q Consensus 43 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 101 (396)
..+.|++..|++.+.+........+.+. -......++......|++++|.+.++++...
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4577888888766666555432222122 1233344566677778888888888776654
No 382
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=81.43 E-value=28 Score=28.77 Aligned_cols=105 Identities=11% Similarity=0.049 Sum_probs=63.9
Q ss_pred CCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccC--CCCCChHHHHH-HHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 016027 67 NFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQ--SWAPTVRVYNI-LLNGWFRSKNVKDAERFWLEMRKENVTPN 143 (396)
Q Consensus 67 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 143 (396)
|-....+++..++..|++.++.+.+.++.++...... +.+-|+..... +.-.|....-.++.++..+.|.+.|..-+
T Consensus 110 gE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWe 189 (412)
T COG5187 110 GETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWE 189 (412)
T ss_pred cchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHH
Confidence 4566778899999999999999999888777544332 44444433222 22333334446777788888888864322
Q ss_pred h----hHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 016027 144 V----VTYGTLVEGYCRLRRVDRAIRLVKEMRKE 173 (396)
Q Consensus 144 ~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 173 (396)
. .+|..+- +....++.+|-.++......
T Consensus 190 RrNRyK~Y~Gi~--~m~~RnFkeAa~Ll~d~l~t 221 (412)
T COG5187 190 RRNRYKVYKGIF--KMMRRNFKEAAILLSDILPT 221 (412)
T ss_pred hhhhHHHHHHHH--HHHHHhhHHHHHHHHHHhcc
Confidence 1 2333332 22345777777777666543
No 383
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=81.25 E-value=30 Score=29.13 Aligned_cols=134 Identities=15% Similarity=0.072 Sum_probs=74.8
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhc--cCCCCCChH
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKEL--DQSWAPTVR 110 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~ 110 (396)
...++.+... +..+.++--+..+.+.+.. |-..-.+++.....-|++.|+.+.|.+.+++.... .-|.+.|+.
T Consensus 70 ~~~l~~m~~~--neeki~eld~~iedaeenl---GE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVv 144 (393)
T KOG0687|consen 70 QDLLNSMKKA--NEEKIKELDEKIEDAEENL---GESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVV 144 (393)
T ss_pred HHHHHHHHHh--hHHHHHHHHHHHHHHHHhc---chHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhH
Confidence 4444444442 2233344444444444432 33555677888999999999999999888775433 225666766
Q ss_pred HHHHHHHH-HHhcCChhHHHHHHHHHHhCCCCCC----hhHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 016027 111 VYNILLNG-WFRSKNVKDAERFWLEMRKENVTPN----VVTYGTLVEGYCRLRRVDRAIRLVKEMRKE 173 (396)
Q Consensus 111 ~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 173 (396)
.+..-+.. |....-..+-++..+.+.+.|..-+ -.+|..+- |....++.+|-.+|-+....
T Consensus 145 f~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly--~msvR~Fk~Aa~Lfld~vsT 210 (393)
T KOG0687|consen 145 FYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLY--CMSVRNFKEAADLFLDSVST 210 (393)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHH--HHHHHhHHHHHHHHHHHccc
Confidence 65543333 3333334455555555666653322 22444332 33456888888887766543
No 384
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=80.97 E-value=51 Score=31.23 Aligned_cols=87 Identities=11% Similarity=0.087 Sum_probs=32.3
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCC-CCCChhhHHHHHHHHHh---c
Q 016027 222 KGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESG-YTPDRLTYHILLKILCK---E 297 (396)
Q Consensus 222 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~---~ 297 (396)
.++.-.|.++.|++.+-. ......+...+...+..|.-.+-..... ..+.... -.|.+..+..|+..|.+ .
T Consensus 266 ~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~~ 340 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFEI 340 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTTT
T ss_pred HHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHhc
Confidence 344456777777777665 1112334444444443332222211111 1111111 01112445566666654 3
Q ss_pred CCHHHHHHHHHHHHHc
Q 016027 298 DKLDLAIQVSKEMKCR 313 (396)
Q Consensus 298 ~~~~~a~~~~~~~~~~ 313 (396)
.+..+|.+++--+...
T Consensus 341 td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 341 TDPREALQYLYLICLF 356 (613)
T ss_dssp T-HHHHHHHHHGGGGS
T ss_pred cCHHHHHHHHHHHHHc
Confidence 4666666666665543
No 385
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=80.74 E-value=8.8 Score=22.28 Aligned_cols=30 Identities=20% Similarity=0.208 Sum_probs=22.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhccCC
Q 016027 75 FEILLDSLCKQGRVKAASEYFHKRKELDQS 104 (396)
Q Consensus 75 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 104 (396)
...+.-++.+.|++++|.+..+.+.+.+|+
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~ 33 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPD 33 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 455777788888888888888888877544
No 386
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=80.33 E-value=43 Score=31.88 Aligned_cols=127 Identities=15% Similarity=0.117 Sum_probs=80.4
Q ss_pred HHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccC---CCCchhHHHHHHHHHHHcCChHHHHHH
Q 016027 18 LLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKN---FDSGASLFEILLDSLCKQGRVKAASEY 94 (396)
Q Consensus 18 ~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~ 94 (396)
+.++...-..|+..+.++...++-.|....+++.-+++.+.+.+...-.. .+.-...|...++---+-|+-++|+..
T Consensus 186 L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~ 265 (1226)
T KOG4279|consen 186 LDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNT 265 (1226)
T ss_pred HHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHHHHHHH
Confidence 34444444478888888999999999999999999999888877531100 011111233333333345788889988
Q ss_pred HHHHhhccCCCCCChHHH-----HHH--HHHHHhcCChhHHHHHHHHHHhCCCCCChhH
Q 016027 95 FHKRKELDQSWAPTVRVY-----NIL--LNGWFRSKNVKDAERFWLEMRKENVTPNVVT 146 (396)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~-----~~l--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 146 (396)
.-.+.+.+....||.... ..+ .+.|...+..+.|.+.|++..+ +.|+..+
T Consensus 266 ~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFe--veP~~~s 322 (1226)
T KOG4279|consen 266 VLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFE--VEPLEYS 322 (1226)
T ss_pred HHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhc--cCchhhc
Confidence 888888877778875432 221 1223445667778888887765 3555443
No 387
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.12 E-value=29 Score=27.77 Aligned_cols=54 Identities=9% Similarity=0.014 Sum_probs=28.6
Q ss_pred CCHHHHHHHHHHHHhc--CCCCch---hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 016027 193 GRFEEVSGMMERFLVC--EPGPTM---VTYTSLVKGYCKAGDLEGASKILKMMISRGFL 246 (396)
Q Consensus 193 ~~~~~a~~~~~~~~~~--~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 246 (396)
.++++|+..|++.-+- |.+.+. ..+.-....-...+++.+|+++|+++....+.
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4555566655554432 111111 12222333445667788888888888766444
No 388
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=79.81 E-value=17 Score=24.84 Aligned_cols=79 Identities=13% Similarity=0.008 Sum_probs=40.5
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCchHHHHHHH
Q 016027 299 KLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFKKRGMTALAQKLCN 378 (396)
Q Consensus 299 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 378 (396)
..++|..+.+.+...+.. ...+--+-+..+.+.|++++| +..-. ....||...|..| +-.+.|-.+++...+.
T Consensus 21 cH~EA~tIa~wL~~~~~~-~E~v~lIr~~sLmNrG~Yq~A---Ll~~~-~~~~pdL~p~~AL--~a~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGEM-EEVVALIRLSSLMNRGDYQEA---LLLPQ-CHCYPDLEPWAAL--CAWKLGLASALESRLT 93 (116)
T ss_dssp -HHHHHHHHHHHHHTTTT-HHHHHHHHHHHHHHTT-HHHH---HHHHT-TS--GGGHHHHHH--HHHHCT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcH-HHHHHHHHHHHHHhhHHHHHH---HHhcc-cCCCccHHHHHHH--HHHhhccHHHHHHHHH
Confidence 456666666666654321 222223334456677777777 21122 2235666666555 3457777777777777
Q ss_pred HHhccc
Q 016027 379 VMSSVP 384 (396)
Q Consensus 379 ~~~~~~ 384 (396)
++...+
T Consensus 94 rla~~g 99 (116)
T PF09477_consen 94 RLASSG 99 (116)
T ss_dssp HHCT-S
T ss_pred HHHhCC
Confidence 665543
No 389
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=79.30 E-value=49 Score=29.96 Aligned_cols=179 Identities=12% Similarity=0.075 Sum_probs=99.5
Q ss_pred CCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHH
Q 016027 141 TPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSL 220 (396)
Q Consensus 141 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 220 (396)
..|.....+++..+..+-.+.-+..+..+|...| .+...+..++.+|... ..++-..+|+++.+.... +...-..|
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHH
Confidence 3456666777777777777777777777777764 3556667777777766 556677777777665432 33323333
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCC-----CChhhHHHHHHHHhccCCHHHHHHHHHHHHHC-CCCCChhhHHHHHHHH
Q 016027 221 VKGYCKAGDLEGASKILKMMISRGFL-----PSPTTYNYFFRYFSKFGKVEDAMNLYRKMIES-GYTPDRLTYHILLKIL 294 (396)
Q Consensus 221 ~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~ 294 (396)
+. +...++...+...|..+..+-++ .-...|..+.... ..+.+....+..++... |...-...+..+-.-|
T Consensus 139 a~-~yEkik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 139 AD-KYEKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HH-HHHHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 33 33446777777777766654211 0112333333321 24455555555555443 2222333444444556
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 016027 295 CKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIH 327 (396)
Q Consensus 295 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 327 (396)
....++.+|++++..+.++.-+ |...-..++.
T Consensus 216 s~~eN~~eai~Ilk~il~~d~k-~~~ar~~~i~ 247 (711)
T COG1747 216 SENENWTEAIRILKHILEHDEK-DVWARKEIIE 247 (711)
T ss_pred ccccCHHHHHHHHHHHhhhcch-hhhHHHHHHH
Confidence 6667777777777777665433 4444444443
No 390
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=79.18 E-value=12 Score=29.06 Aligned_cols=32 Identities=16% Similarity=-0.005 Sum_probs=17.5
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 016027 316 DIDLDTSTMLIHLLCRMYKFDEASAEFEDMIR 347 (396)
Q Consensus 316 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 347 (396)
.|++.++..++.++...|+.++|.....++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44555555555555555555555555555544
No 391
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=79.03 E-value=49 Score=29.81 Aligned_cols=67 Identities=10% Similarity=0.065 Sum_probs=34.4
Q ss_pred CCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhc-CChhHHHHHHHHHHhC
Q 016027 69 DSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRS-KNVKDAERFWLEMRKE 138 (396)
Q Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~ 138 (396)
+.|+..|...+.-+.+.+.+.+...+|..|....|. ++..|-..+.....- .+++.|..+|...++.
T Consensus 102 ~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~---~~dLWI~aA~wefe~n~ni~saRalflrgLR~ 169 (568)
T KOG2396|consen 102 NGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPN---NPDLWIYAAKWEFEINLNIESARALFLRGLRF 169 (568)
T ss_pred CCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCC---CchhHHhhhhhHHhhccchHHHHHHHHHHhhc
Confidence 446666666666665555566666666666655433 333333222222222 2255666665555544
No 392
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=78.72 E-value=65 Score=31.06 Aligned_cols=198 Identities=14% Similarity=0.081 Sum_probs=113.7
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHH---cCChHHHHHHHHHHhhccCCCCCCh
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCK---QGRVKAASEYFHKRKELDQSWAPTV 109 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~ 109 (396)
......|+..+...|++++..+.-..+...- |.++..|...+..... .++..++...|+++.... . ++
T Consensus 113 ~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~-----pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy-~---~v 183 (881)
T KOG0128|consen 113 YAQMVQLIGLLRKLGDLEKLRQARLEMSEIA-----PLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDY-N---SV 183 (881)
T ss_pred hHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-----CCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhccc-c---cc
Confidence 5578889999999999999888888887764 7777888777765443 467778888888887642 2 34
Q ss_pred HHHHHHHHHHH-------hcCChhHHHHHHHHHHhC-CCCCC--hhHHHHH---HHHHHccCCHHHHHHHHHHHHHcCCC
Q 016027 110 RVYNILLNGWF-------RSKNVKDAERFWLEMRKE-NVTPN--VVTYGTL---VEGYCRLRRVDRAIRLVKEMRKEGIE 176 (396)
Q Consensus 110 ~~~~~l~~~~~-------~~~~~~~a~~~~~~~~~~-~~~~~--~~~~~~l---~~~~~~~~~~~~a~~~~~~~~~~~~~ 176 (396)
..|.-.+..+. +.++++....+|.+.+.. |...+ ...|... =..|..+-..++.+.++..-+..++
T Consensus 184 ~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~~- 262 (881)
T KOG0128|consen 184 PIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQPL- 262 (881)
T ss_pred hHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccc-
Confidence 44444443332 346778888888877654 32222 2222222 2334444445666777766665542
Q ss_pred CCHHHHHHHHHHHH-------HcCCHHHHHHH-------HHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 016027 177 PNAIVYNTVIDGLV-------EAGRFEEVSGM-------MERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMIS 242 (396)
Q Consensus 177 ~~~~~~~~l~~~~~-------~~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 242 (396)
|..+-..-+.--. ...+++.+..- +++..+.. .+-...|..++..+...|++-....+++++..
T Consensus 263 -D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~-~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~ 340 (881)
T KOG0128|consen 263 -DEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKE-PIKDQEWMSYIDFEKKSGDPVRIQLIEERAVA 340 (881)
T ss_pred -hhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 2222111111111 11223333322 23332221 13345567777778888887666666666553
No 393
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=78.71 E-value=11 Score=31.58 Aligned_cols=108 Identities=11% Similarity=0.043 Sum_probs=84.2
Q ss_pred CCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCC
Q 016027 26 EVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSW 105 (396)
Q Consensus 26 ~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 105 (396)
+.|+.. ...|..=+.-|.+..++..|...|.+.++.... +-..+...|++-..+-.-.|++..|+.=...+...+|.
T Consensus 75 ~ep~E~-Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~-D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~- 151 (390)
T KOG0551|consen 75 GEPHEQ-AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCA-DPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPT- 151 (390)
T ss_pred CChHHH-HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCC-CccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcc-
Confidence 356543 667888899999999999999999999886532 22345667888888888889999999999999988876
Q ss_pred CCChHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 016027 106 APTVRVYNILLNGWFRSKNVKDAERFWLEMRKE 138 (396)
Q Consensus 106 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 138 (396)
....|-.=..++....++.+|....++..+.
T Consensus 152 --h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~ 182 (390)
T KOG0551|consen 152 --HLKAYIRGAKCLLELERFAEAVNWCEEGLQI 182 (390)
T ss_pred --hhhhhhhhhHHHHHHHHHHHHHHHHhhhhhh
Confidence 5667777777788888888888888777653
No 394
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=78.35 E-value=80 Score=31.93 Aligned_cols=111 Identities=18% Similarity=0.122 Sum_probs=62.9
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChh----hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 016027 252 YNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRL----TYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIH 327 (396)
Q Consensus 252 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 327 (396)
|.-.+..-.+.+.+..|+.++ .|+.. .|.+....+.....+++|.-.|+..-+. ...+.
T Consensus 911 ~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~ 973 (1265)
T KOG1920|consen 911 FPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL---------EKALK 973 (1265)
T ss_pred cHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHH
Confidence 333444444555566665555 23443 4445555566677778877777665432 23466
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHHcCCchHHHHHHHHHhc
Q 016027 328 LLCRMYKFDEASAEFEDMIRRGLVPHYL--TFKRLNDEFKKRGMTALAQKLCNVMSS 382 (396)
Q Consensus 328 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~ 382 (396)
+|..+|+|.+|+.+..++... -+.. +-..|+.-+...|+.-+|-++..+.-+
T Consensus 974 a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 974 AYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred HHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc
Confidence 777788888888877666321 1111 124555566666666666666655443
No 395
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=77.33 E-value=19 Score=24.22 Aligned_cols=51 Identities=14% Similarity=0.150 Sum_probs=23.5
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 016027 118 GWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEG 174 (396)
Q Consensus 118 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 174 (396)
.+...|++++|..+.+.+ ..||...|..|... +.|..+.....+.+|...|
T Consensus 48 SLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce~--rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKL----CYPDLEPWLALCEW--RLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHccchHHHHHHhcCCC----CCchHHHHHHHHHH--hhccHHHHHHHHHHHHhCC
Confidence 344455555555554433 23455554444332 4444444444444444444
No 396
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=77.24 E-value=46 Score=33.78 Aligned_cols=127 Identities=17% Similarity=0.101 Sum_probs=71.8
Q ss_pred ccCchhHHH------HHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhccc---ccCCCCchhHHHHH
Q 016027 8 AKEFDSAWC------LLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDM---VKNFDSGASLFEIL 78 (396)
Q Consensus 8 ~g~~~~A~~------~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~~~~~l 78 (396)
.|.+.+|.+ ++.+.+... .|+ ....|..+...+-+.|+.++|+..-.++.-... ..+.+.+...|..+
T Consensus 945 e~~~~~~~~~~~slnl~~~v~~~~-h~~--~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nl 1021 (1236)
T KOG1839|consen 945 EDGFSEAYELPESLNLLNNVMGVL-HPE--VASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNL 1021 (1236)
T ss_pred ccchhhhhhhhhhhhHHHHhhhhc-chh--HHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHH
Confidence 444554444 666555432 333 256778888888888888888877665443211 11234455556666
Q ss_pred HHHHHHcCChHHHHHHHHHHhhc-----cCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 016027 79 LDSLCKQGRVKAASEYFHKRKEL-----DQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRK 137 (396)
Q Consensus 79 ~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 137 (396)
.......++...|...+.++... .+..+|.+.+++.+-..+...++++.|++..+.+..
T Consensus 1022 al~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a 1085 (1236)
T KOG1839|consen 1022 ALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALA 1085 (1236)
T ss_pred HHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 66666666666666666655443 122333444444444444444666666666666543
No 397
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=77.16 E-value=12 Score=28.51 Aligned_cols=68 Identities=9% Similarity=0.033 Sum_probs=43.3
Q ss_pred CHHHHHHHHHHHHHcCCCCCh--h-----hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 016027 299 KLDLAIQVSKEMKCRGCDIDL--D-----TSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFKKRGM 369 (396)
Q Consensus 299 ~~~~a~~~~~~~~~~~~~~~~--~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 369 (396)
-++.|+.+|+.+.+....|.. . .-...+..|.+.|.+++|.+++++... .|+......-+....+..+
T Consensus 84 PLESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~kL~~II~~Kd 158 (200)
T cd00280 84 PLESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS---DPESQKLRMKLLMIIREKD 158 (200)
T ss_pred hHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc---CCCchhHHHHHHHHHHccc
Confidence 367888888888875433211 1 112345668888889999988888876 3454455555555555444
No 398
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=76.79 E-value=29 Score=32.40 Aligned_cols=92 Identities=9% Similarity=0.064 Sum_probs=47.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChH------HHHHHHHHHhhccCCCCCChHH
Q 016027 38 ILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVK------AASEYFHKRKELDQSWAPTVRV 111 (396)
Q Consensus 38 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~------~A~~~~~~~~~~~~~~~~~~~~ 111 (396)
.+..+|..+|++-.+.++++.....+. +-..-...++..++...+.|.++ .|.+.++...- .-|..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~--~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~l-----n~d~~t 105 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNK--GDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARL-----NGDSLT 105 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCc--CCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhc-----CCcchH
Confidence 677777777777777777777666531 11222344566666666666653 23333333331 125555
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH
Q 016027 112 YNILLNGWFRSKNVKDAERFWLEMR 136 (396)
Q Consensus 112 ~~~l~~~~~~~~~~~~a~~~~~~~~ 136 (396)
|..++.+....-+-.-..-++.+++
T Consensus 106 ~all~~~sln~t~~~l~~pvl~~~i 130 (1117)
T COG5108 106 YALLCQASLNPTQRQLGLPVLHELI 130 (1117)
T ss_pred HHHHHHhhcChHhHHhccHHHHHHH
Confidence 6555554444333333333444443
No 399
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=76.31 E-value=28 Score=26.55 Aligned_cols=66 Identities=12% Similarity=0.136 Sum_probs=42.5
Q ss_pred CHHHHHHHHHHHHHCCCCCC--hhhH-----HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 016027 264 KVEDAMNLYRKMIESGYTPD--RLTY-----HILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRM 332 (396)
Q Consensus 264 ~~~~a~~~~~~~~~~~~~~~--~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 332 (396)
-.+.|+.+|+.+.+.-..|. .... ...+-.|.+.|.+++|.+++++.... |+......-+....+.
T Consensus 84 PLESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d---~~~~~~r~kL~~II~~ 156 (200)
T cd00280 84 PLESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSD---PESQKLRMKLLMIIRE 156 (200)
T ss_pred hHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---CCchhHHHHHHHHHHc
Confidence 36889999999887643331 1122 23345789999999999999999863 3444444444444443
No 400
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=76.20 E-value=19 Score=23.72 Aligned_cols=55 Identities=15% Similarity=0.052 Sum_probs=32.1
Q ss_pred CCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCC
Q 016027 69 DSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKN 124 (396)
Q Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 124 (396)
|.|......+...+...|++++|++.+-.+.+.+++.. +...-..++..+...|.
T Consensus 19 P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~-~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 19 PDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYE-DDAARKRLLDIFELLGP 73 (90)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCC-CCHHHHHHHHHHHHH-T
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccc-ccHHHHHHHHHHHHcCC
Confidence 66777777777788888888888887777777654432 23334444444444443
No 401
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=76.14 E-value=53 Score=28.71 Aligned_cols=67 Identities=13% Similarity=0.109 Sum_probs=52.1
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhc
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKEL 101 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 101 (396)
..++..++.-|...|+++.|++.|.++..--. +.......+..++..-...|+|.....+..++...
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCT--s~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCT--SAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhc--chHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 35778899999999999999999999665321 12444667788888888899999888888887664
No 402
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=75.33 E-value=46 Score=27.64 Aligned_cols=58 Identities=22% Similarity=0.248 Sum_probs=32.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 016027 183 NTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMI 241 (396)
Q Consensus 183 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 241 (396)
......|..+|.+.+|.++.++.+..++ .+...+-.++..+...||--.+.+.++.+.
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldp-L~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDP-LSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcCh-hhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 3444555566666666666666555433 355555556666666666555555555443
No 403
>PRK10941 hypothetical protein; Provisional
Probab=74.94 E-value=47 Score=27.48 Aligned_cols=80 Identities=11% Similarity=0.037 Sum_probs=61.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHH
Q 016027 111 VYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEG-IEPNAIVYNTVIDGL 189 (396)
Q Consensus 111 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~ 189 (396)
..+.+-.++.+.++++.|+.+.+.+....+. +..-+.--.-.|.+.|.+..|..=++..++.. -.|+.......+...
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~-dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l 261 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPE-DPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSI 261 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence 3566777899999999999999999987533 66667777788999999999999998887763 345555555555554
Q ss_pred HH
Q 016027 190 VE 191 (396)
Q Consensus 190 ~~ 191 (396)
..
T Consensus 262 ~~ 263 (269)
T PRK10941 262 EQ 263 (269)
T ss_pred hh
Confidence 43
No 404
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=73.67 E-value=5.1 Score=28.50 Aligned_cols=33 Identities=27% Similarity=0.301 Sum_probs=24.9
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 016027 330 CRMYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEF 364 (396)
Q Consensus 330 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 364 (396)
-..|.-..|-.+|++|++.|-+|| .|+.|+..+
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 344666788899999999888887 577777654
No 405
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=73.30 E-value=1.1e+02 Score=30.80 Aligned_cols=95 Identities=8% Similarity=-0.008 Sum_probs=59.9
Q ss_pred hhhhhccCchhHHHHHHHHhCCCCCCCCCChhHHH----HHHHHHHHcCC---HHHHHHHHHHHhhcccccCCCCchhHH
Q 016027 3 KVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFV----ILIRRYARAGM---VEAAIWTFEFANNLDMVKNFDSGASLF 75 (396)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~----~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~~ 75 (396)
+++.....|++|+..|+++-.+-+...+ ..++.. +++.-....|+ +++|+.-|+++... +.-|--|
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~ 555 (932)
T PRK13184 483 DAFLAEKLYDQALIFYRRIRESFPGRKE-GYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGG------VGAPLEY 555 (932)
T ss_pred HHHHhhHHHHHHHHHHHHHhhcCCCccc-chHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCC------CCCchHH
Confidence 5677788999999998888765432111 122222 23333334444 66777777776554 3333335
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHhhccCC
Q 016027 76 EILLDSLCKQGRVKAASEYFHKRKELDQS 104 (396)
Q Consensus 76 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 104 (396)
.--+..|.+.|++++-.+.+..+.++-+.
T Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 584 (932)
T PRK13184 556 LGKALVYQRLGEYNEEIKSLLLALKRYSQ 584 (932)
T ss_pred HhHHHHHHHhhhHHHHHHHHHHHHHhcCC
Confidence 55566677889999999988888876544
No 406
>PHA02875 ankyrin repeat protein; Provisional
Probab=73.24 E-value=67 Score=28.55 Aligned_cols=213 Identities=16% Similarity=0.162 Sum_probs=104.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCChhH--HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHH
Q 016027 116 LNGWFRSKNVKDAERFWLEMRKENVTPNVVT--YGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAI--VYNTVIDGLVE 191 (396)
Q Consensus 116 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~ 191 (396)
+...+..|+.+-+..+ .+.|..|+... -.+.+...+..|+.+ +.+.+.+.|..|+.. .....+.....
T Consensus 6 L~~A~~~g~~~iv~~L----l~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~ 77 (413)
T PHA02875 6 LCDAILFGELDIARRL----LDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVE 77 (413)
T ss_pred HHHHHHhCCHHHHHHH----HHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHH
Confidence 3344566777555444 45677766543 233445555677765 445556667555432 12234555667
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChh---hHHHHHHHHhccCCHHHH
Q 016027 192 AGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPT---TYNYFFRYFSKFGKVEDA 268 (396)
Q Consensus 192 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a 268 (396)
.|+.+.+..+++.-.......+..-. +.+...+..|+.+ +++.+.+.|..|+.. ..+. +...+..|+.+.+
T Consensus 78 ~g~~~~v~~Ll~~~~~~~~~~~~~g~-tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tp-Lh~A~~~~~~~~v 151 (413)
T PHA02875 78 EGDVKAVEELLDLGKFADDVFYKDGM-TPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSP-LHLAVMMGDIKGI 151 (413)
T ss_pred CCCHHHHHHHHHcCCcccccccCCCC-CHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCH-HHHHHHcCCHHHH
Confidence 88887766555432111000111112 2333445566654 445555566554432 2223 3344456776554
Q ss_pred HHHHHHHHHCCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhh---HHHHHHHHHhcCChhHHHHHH
Q 016027 269 MNLYRKMIESGYTPD---RLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDT---STMLIHLLCRMYKFDEASAEF 342 (396)
Q Consensus 269 ~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~ 342 (396)
..++ +.|..++ ....+.+. ..+..|+.+- .+.+.+.|..++... ..+.+...+..|+.+ +.
T Consensus 152 ~~Ll----~~g~~~~~~d~~g~TpL~-~A~~~g~~ei----v~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv 218 (413)
T PHA02875 152 ELLI----DHKACLDIEDCCGCTPLI-IAMAKGDIAI----CKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IV 218 (413)
T ss_pred HHHH----hcCCCCCCCCCCCCCHHH-HHHHcCCHHH----HHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HH
Confidence 4444 4443332 23333333 3345566543 444555665554322 123444445556543 45
Q ss_pred HHHHHCCCCCCHH
Q 016027 343 EDMIRRGLVPHYL 355 (396)
Q Consensus 343 ~~~~~~~~~p~~~ 355 (396)
+.+++.|..++..
T Consensus 219 ~~Ll~~gad~n~~ 231 (413)
T PHA02875 219 RLFIKRGADCNIM 231 (413)
T ss_pred HHHHHCCcCcchH
Confidence 5566778777643
No 407
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=72.79 E-value=9.9 Score=30.08 Aligned_cols=57 Identities=23% Similarity=0.201 Sum_probs=47.1
Q ss_pred hhhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcc
Q 016027 3 KVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLD 63 (396)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 63 (396)
.+..+.|+.+.|.+++.+++.. .|. ....|..++..-.+.|+++.|.+.|++..+.+
T Consensus 3 ~~~~~~~D~~aaaely~qal~l--ap~--w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld 59 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALEL--APE--WAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD 59 (287)
T ss_pred chhcccCChHHHHHHHHHHhhc--Cch--hhhhhhhcchhhhhcccHHHHHHHHHHHHcCC
Confidence 4566788999999999998873 455 35689999999999999999999999988875
No 408
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=72.31 E-value=1.2e+02 Score=30.90 Aligned_cols=95 Identities=13% Similarity=-0.001 Sum_probs=47.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhcccc-------------------cC---CCCc--hhHHHHHHHHHHHcCChHHHH
Q 016027 37 VILIRRYARAGMVEAAIWTFEFANNLDMV-------------------KN---FDSG--ASLFEILLDSLCKQGRVKAAS 92 (396)
Q Consensus 37 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-------------------~~---~~~~--~~~~~~l~~~~~~~~~~~~A~ 92 (396)
..++.+|...|...+|+..|.++...-.. .| .++. .+-|...++.+-..+-.+.+.
T Consensus 924 fmlg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~vc 1003 (1480)
T KOG4521|consen 924 FMLGIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEVC 1003 (1480)
T ss_pred HhhheeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHHH
Confidence 34556677788888888888777653110 00 1111 223444555555555555555
Q ss_pred HHHHHHhhccCCCCCC-hHHHHHHHHHHHhcCChhHHHHH
Q 016027 93 EYFHKRKELDQSWAPT-VRVYNILLNGWFRSKNVKDAERF 131 (396)
Q Consensus 93 ~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~ 131 (396)
++-..+.+.-+...|+ ..+++.+.......|.+-+|...
T Consensus 1004 QlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~a 1043 (1480)
T KOG4521|consen 1004 QLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKA 1043 (1480)
T ss_pred HHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHH
Confidence 5555554432222222 22344444555555555555443
No 409
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=72.16 E-value=48 Score=26.37 Aligned_cols=99 Identities=18% Similarity=0.141 Sum_probs=47.2
Q ss_pred CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC---ChhhH--HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh
Q 016027 246 LPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTP---DRLTY--HILLKILCKEDKLDLAIQVSKEMKCRGCDIDLD 320 (396)
Q Consensus 246 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 320 (396)
.+...-++.|+--|.-...+.+|...|.. +.++.| |..++ ..-++.....|+.+.|++....+...-+..|..
T Consensus 23 ~~~~~d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~ 100 (228)
T KOG2659|consen 23 SVMREDLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRE 100 (228)
T ss_pred CcchhhHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchh
Confidence 34444555555555544555555555533 233333 22222 234455567777777777766654332222332
Q ss_pred hHHHHHH----HHHhcCChhHHHHHHHHHH
Q 016027 321 TSTMLIH----LLCRMYKFDEASAEFEDMI 346 (396)
Q Consensus 321 ~~~~l~~----~~~~~~~~~~a~~~~~~~~ 346 (396)
.+-.|.. =+.+.|..++|+++.+.=+
T Consensus 101 l~F~Lq~q~lIEliR~~~~eeal~F~q~~L 130 (228)
T KOG2659|consen 101 LFFHLQQLHLIELIREGKTEEALEFAQTKL 130 (228)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHc
Confidence 2222211 1345556666666555433
No 410
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=72.15 E-value=11 Score=22.68 Aligned_cols=27 Identities=11% Similarity=0.038 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHhc
Q 016027 356 TFKRLNDEFKKRGMTALAQKLCNVMSS 382 (396)
Q Consensus 356 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 382 (396)
---.++.++...|++++|.++++.+..
T Consensus 25 NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 25 NHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344556666667777777666666544
No 411
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=71.86 E-value=1.2e+02 Score=30.83 Aligned_cols=120 Identities=13% Similarity=0.143 Sum_probs=58.4
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch----hhHH
Q 016027 146 TYGTLVEGYCRLRRVDRAIRLVKEMRKEG---IEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTM----VTYT 218 (396)
Q Consensus 146 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~ 218 (396)
.|...++.+-..+..+.+.++-...++.- .+.-..+++.+.+.....|.+-+|...+-+- ||. ....
T Consensus 985 YYlkv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~n------pdserrrdcLR 1058 (1480)
T KOG4521|consen 985 YYLKVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRN------PDSERRRDCLR 1058 (1480)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcC------CcHHHHHHHHH
Confidence 35556666666666777666666555541 1111234555566666666666665544332 232 2334
Q ss_pred HHHHHHHhcCChHH------------HHH-HHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHH
Q 016027 219 SLVKGYCKAGDLEG------------ASK-ILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNL 271 (396)
Q Consensus 219 ~l~~~~~~~~~~~~------------a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 271 (396)
.++..++.+|.++. ... +++..-+.........|+.|-..+...+++.+|-.+
T Consensus 1059 qlvivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~Rkaatv 1124 (1480)
T KOG4521|consen 1059 QLVIVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATV 1124 (1480)
T ss_pred HHHHHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHH
Confidence 44555555555432 222 222222222222333455555555666666655443
No 412
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=71.74 E-value=58 Score=27.19 Aligned_cols=150 Identities=14% Similarity=0.056 Sum_probs=74.3
Q ss_pred HcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHc---
Q 016027 84 KQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFR----SKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCR--- 156 (396)
Q Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 156 (396)
..+++..+...+...... + +......+...+.. ..+..+|.++|..+-+.|. ......|...|..
T Consensus 53 ~~~~~~~a~~~~~~a~~~--~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~---~~a~~~lg~~~~~G~g 124 (292)
T COG0790 53 YPPDYAKALKSYEKAAEL--G---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGL---AEALFNLGLMYANGRG 124 (292)
T ss_pred ccccHHHHHHHHHHhhhc--C---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhccc---HHHHHhHHHHHhcCCC
Confidence 345566666666665542 1 22333344444433 3356777777776666552 2333334444444
Q ss_pred -cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHh--
Q 016027 157 -LRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAG-------RFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCK-- 226 (396)
Q Consensus 157 -~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 226 (396)
..+..+|..+|+...+.|..+.......+...|..-. +...|...+.++...+ +......+...|..
T Consensus 125 v~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~ 201 (292)
T COG0790 125 VPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGL 201 (292)
T ss_pred cccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCC
Confidence 3367777777777777774432222333333333221 1225666666655543 22233333333322
Q ss_pred --cCChHHHHHHHHHHHHCC
Q 016027 227 --AGDLEGASKILKMMISRG 244 (396)
Q Consensus 227 --~~~~~~a~~~~~~~~~~~ 244 (396)
..++++|...|....+.|
T Consensus 202 Gv~~d~~~A~~wy~~Aa~~g 221 (292)
T COG0790 202 GVPRDLKKAFRWYKKAAEQG 221 (292)
T ss_pred CCCcCHHHHHHHHHHHHHCC
Confidence 224556666666665554
No 413
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=71.60 E-value=25 Score=22.94 Aligned_cols=64 Identities=9% Similarity=0.036 Sum_probs=32.9
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCchHH
Q 016027 304 IQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFKKRGMTALA 373 (396)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 373 (396)
.+++..+.+.|+- +......+-.+-...|+.+.|.+++..+. .| |+ .|...+.++...|.-+-|
T Consensus 22 ~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg--~~--aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 22 RDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QK--EG--WFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cC--Cc--HHHHHHHHHHHcCchhhh
Confidence 3455555555432 33333333322234566667777766666 43 22 455666666666655544
No 414
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=71.06 E-value=61 Score=27.10 Aligned_cols=153 Identities=11% Similarity=0.009 Sum_probs=101.6
Q ss_pred HHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHc----CChHHHHHHHHHHhhccCCCCCChHHHHHHHHH
Q 016027 43 YARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQ----GRVKAASEYFHKRKELDQSWAPTVRVYNILLNG 118 (396)
Q Consensus 43 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~ 118 (396)
....+++..+...+..+.... +......++..|... .+..+|.++|+.+... + .......|...
T Consensus 51 ~~~~~~~~~a~~~~~~a~~~~-------~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~--g---~~~a~~~lg~~ 118 (292)
T COG0790 51 SAYPPDYAKALKSYEKAAELG-------DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAAD--G---LAEALFNLGLM 118 (292)
T ss_pred ccccccHHHHHHHHHHhhhcC-------ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhc--c---cHHHHHhHHHH
Confidence 345677888888888777632 224455555555543 4678899999977654 3 44455566666
Q ss_pred HHh----cCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccC-------CHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 016027 119 WFR----SKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLR-------RVDRAIRLVKEMRKEGIEPNAIVYNTVID 187 (396)
Q Consensus 119 ~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 187 (396)
+.. ..+..+|...|++..+.|..+...+...+...|.... +...|...|.++...+ +......+..
T Consensus 119 ~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~ 195 (292)
T COG0790 119 YANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGR 195 (292)
T ss_pred HhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHH
Confidence 665 4488999999999999885543333555555554431 3347888999888887 4444555555
Q ss_pred HHHH----cCCHHHHHHHHHHHHhcCC
Q 016027 188 GLVE----AGRFEEVSGMMERFLVCEP 210 (396)
Q Consensus 188 ~~~~----~~~~~~a~~~~~~~~~~~~ 210 (396)
.|.. ..+.++|...|...-+.|.
T Consensus 196 ~y~~G~Gv~~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 196 MYEKGLGVPRDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred HHHcCCCCCcCHHHHHHHHHHHHHCCC
Confidence 5533 3478899999999988765
No 415
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=70.47 E-value=63 Score=30.31 Aligned_cols=226 Identities=15% Similarity=0.058 Sum_probs=0.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChH----------HHHHHHHHHhhccCCCCCCh
Q 016027 40 IRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVK----------AASEYFHKRKELDQSWAPTV 109 (396)
Q Consensus 40 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----------~A~~~~~~~~~~~~~~~~~~ 109 (396)
+-...-.|+...+++..... ..+..+-..+...+...|-++ ...+.+-.--.. ..-.+.
T Consensus 304 ~~~~i~~~d~~~vL~~~~~~---------~~~~w~aahladLl~~~g~L~~~~~~~~~~~~lre~~ll~YA~--~L~s~~ 372 (566)
T PF07575_consen 304 ILLAIFEGDIESVLKEISSL---------FDDWWFAAHLADLLEHKGLLEDSEQEDFGGSSLREYLLLEYAS--SLMSHH 372 (566)
T ss_dssp HHHHHHTS--GGGHHHHHHH-----------HHHHHHHHHHHHHHTTSS--SS-----TS-HHHHHHHHHHH--HHHT-T
T ss_pred HHHHHHccCHHHHHHHHHHH---------ccchhHHHHHHHHHHhcCccccccccccccccHHHHHHHHHHH--HHhcCc
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 016027 110 RVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGL 189 (396)
Q Consensus 110 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 189 (396)
..|..-+..+...++.. ....+.++.+-+-.+.....-++..|.+.|-.+.+.++++.+-.. .....-|..-+..+
T Consensus 373 ~lW~vai~yL~~c~~~g--~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~--~~~~~~~g~AL~~~ 448 (566)
T PF07575_consen 373 SLWQVAIGYLSSCPDEG--RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQR--LLKEGRYGEALSWF 448 (566)
T ss_dssp TTHHHHHHHHHS-SSS---HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHH--HHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHCChhh--HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--HHHCCCHHHHHHHH
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHH
Q 016027 190 VEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAM 269 (396)
Q Consensus 190 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 269 (396)
.+.|+...+..+.+.+.+.....+......++.......-....+..+....+-.-.-+. +++.+|.
T Consensus 449 ~ra~d~~~v~~i~~~ll~~~~~~~~~~~~~ll~~i~~~~~~~~~L~fla~yreF~~~~~~-------------~~~~~Aa 515 (566)
T PF07575_consen 449 IRAGDYSLVTRIADRLLEEYCNNGEPLDDDLLDNIGSPMLLSQRLSFLAKYREFYELYDE-------------GDFREAA 515 (566)
T ss_dssp H-------------------------------------------------------------------------------
T ss_pred HHCCCHHHHHHHHHHHHHHHhcCCCcccHHHHHHhcchhhhhhhhHHHHHHHHHHHHHhh-------------hhHHHHH
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHH
Q 016027 270 NLYRKMIESGYTPDRLTYHILLKI 293 (396)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~l~~~ 293 (396)
+.+-.+...+..|...-...|..+
T Consensus 516 ~~Lv~Ll~~~~~Pk~f~~~LL~d~ 539 (566)
T PF07575_consen 516 SLLVSLLKSPIAPKSFWPLLLCDA 539 (566)
T ss_dssp ------------------------
T ss_pred HHHHHHHCCCCCcHHHHHHHHHHH
No 416
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=70.29 E-value=27 Score=22.79 Aligned_cols=13 Identities=15% Similarity=0.360 Sum_probs=4.9
Q ss_pred CCHHHHHHHHHHH
Q 016027 193 GRFEEVSGMMERF 205 (396)
Q Consensus 193 ~~~~~a~~~~~~~ 205 (396)
|+.+.|.+++..+
T Consensus 50 g~~~~ar~LL~~L 62 (88)
T cd08819 50 GNESGARELLKRI 62 (88)
T ss_pred CcHHHHHHHHHHh
Confidence 3333333333333
No 417
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=69.98 E-value=39 Score=24.39 Aligned_cols=66 Identities=17% Similarity=0.173 Sum_probs=30.0
Q ss_pred ChHHHHHHHHHHHhcC---ChhHHHHHHHHHHhC-CCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 016027 108 TVRVYNILLNGWFRSK---NVKDAERFWLEMRKE-NVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKE 173 (396)
Q Consensus 108 ~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 173 (396)
+..+-..+.-++.+.. +..+.+.+++++.+. ...-.-.....|.-++.+.+++++++++.+.+.+.
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 3334444444444433 234444555555541 11112223334444555556666666655555554
No 418
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=69.66 E-value=21 Score=21.53 Aligned_cols=21 Identities=33% Similarity=0.705 Sum_probs=9.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHH
Q 016027 185 VIDGLVEAGRFEEVSGMMERF 205 (396)
Q Consensus 185 l~~~~~~~~~~~~a~~~~~~~ 205 (396)
++.++...|++++|.++++.+
T Consensus 29 vI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 29 VIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 344444444444444444443
No 419
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.47 E-value=1.2e+02 Score=29.96 Aligned_cols=187 Identities=18% Similarity=0.181 Sum_probs=106.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHhcCCCCchhhHHH-
Q 016027 146 TYGTLVEGYCRLRRVDRAIRLVKEMRKEG---IEPNAIVYNTVIDGLVEAGRF--EEVSGMMERFLVCEPGPTMVTYTS- 219 (396)
Q Consensus 146 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~- 219 (396)
-|..|+..|...|+.++|++++....+.. -..-...+..++..+...+.. +-..++-+......+......+..
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 47889999999999999999999988742 111122333455555555554 555555555554433222222211
Q ss_pred -----------HHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCC--------HHHHHHH-HHH----H
Q 016027 220 -----------LVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGK--------VEDAMNL-YRK----M 275 (396)
Q Consensus 220 -----------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------~~~a~~~-~~~----~ 275 (396)
-+-.|......+.+...++.+....-.++....+.++..|...=+ -+++.+. +++ +
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~ 665 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDF 665 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHH
Confidence 233456677788888899988877656677777777777653211 1223333 111 1
Q ss_pred HHC--CCCCC--------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-------------CCCCChhhHHHHHHHHHhc
Q 016027 276 IES--GYTPD--------RLTYHILLKILCKEDKLDLAIQVSKEMKCR-------------GCDIDLDTSTMLIHLLCRM 332 (396)
Q Consensus 276 ~~~--~~~~~--------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------------~~~~~~~~~~~l~~~~~~~ 332 (396)
.+. ...|. ...|....-.+.+.|+.++|+.++-..... ..+++...|..++..|...
T Consensus 666 l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~d~~~A~~Yc~~~y~~~~~~~~~y~~lL~~~l~~ 745 (877)
T KOG2063|consen 666 LESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELDDIDAAESYCLPQYESDKTNKEIYLTLLRIYLNP 745 (877)
T ss_pred hhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhcchhHHHHHHHHhccCCCcccHHHHHHHHHHhcc
Confidence 111 11221 222333333455778888888777655430 1234667777777777665
No 420
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=69.40 E-value=35 Score=25.01 Aligned_cols=30 Identities=23% Similarity=0.122 Sum_probs=12.4
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCCHH
Q 016027 151 VEGYCRLRRVDRAIRLVKEMRKEGIEPNAI 180 (396)
Q Consensus 151 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 180 (396)
+..+...++.-.|.++|+.+.+.+...+..
T Consensus 27 l~~L~~~~~~~sAeei~~~l~~~~p~isla 56 (145)
T COG0735 27 LELLLEADGHLSAEELYEELREEGPGISLA 56 (145)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHhCCCCCHh
Confidence 333333333344444444444443333333
No 421
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=69.18 E-value=23 Score=29.51 Aligned_cols=58 Identities=17% Similarity=0.196 Sum_probs=46.8
Q ss_pred HHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCC
Q 016027 42 RYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQS 104 (396)
Q Consensus 42 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 104 (396)
-..+.|+.++|..+|+.+.... |.++.+...++...-..+++-+|-++|-++...+|+
T Consensus 125 ~~~~~Gk~ekA~~lfeHAlala-----P~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~ 182 (472)
T KOG3824|consen 125 RSRKDGKLEKAMTLFEHALALA-----PTNPQILIEMGQFREMHNEIVEADQCYVKALTISPG 182 (472)
T ss_pred HHHhccchHHHHHHHHHHHhcC-----CCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCC
Confidence 3456789999999999988875 888888888888877788888888888888776555
No 422
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.88 E-value=1.1e+02 Score=29.36 Aligned_cols=152 Identities=16% Similarity=0.131 Sum_probs=83.7
Q ss_pred hhhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHH
Q 016027 3 KVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSL 82 (396)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 82 (396)
+=+.+.+.+++|+......... .|.......+...+..+...|++++|-...-++... +...|......+
T Consensus 364 ~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn--------~~~eWe~~V~~f 433 (846)
T KOG2066|consen 364 DWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN--------NAAEWELWVFKF 433 (846)
T ss_pred HHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc--------hHHHHHHHHHHh
Confidence 3456788999998876554432 332223567888899999999999998877766553 234455555555
Q ss_pred HHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHH---H--------------hCCCCCChh
Q 016027 83 CKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEM---R--------------KENVTPNVV 145 (396)
Q Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~--------------~~~~~~~~~ 145 (396)
...++...... -+...++. .+...|..++..+.. .+...-.++..+. . +..-. +..
T Consensus 434 ~e~~~l~~Ia~---~lPt~~~r--L~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se-~~~ 506 (846)
T KOG2066|consen 434 AELDQLTDIAP---YLPTGPPR--LKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSE-STA 506 (846)
T ss_pred ccccccchhhc---cCCCCCcc--cCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhcc-chh
Confidence 55555433222 12222111 233455555555544 2211111111110 0 00011 223
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHH
Q 016027 146 TYGTLVEGYCRLRRVDRAIRLVKEMR 171 (396)
Q Consensus 146 ~~~~l~~~~~~~~~~~~a~~~~~~~~ 171 (396)
....|+..|...+++..|++++-.++
T Consensus 507 L~e~La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 507 LLEVLAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHHHHHHHHHccChHHHHHHHHhcc
Confidence 33458888888899999988886664
No 423
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=68.86 E-value=61 Score=26.22 Aligned_cols=59 Identities=17% Similarity=0.225 Sum_probs=37.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHh-cCChHHHHHHHHHHHH
Q 016027 184 TVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCK-AGDLEGASKILKMMIS 242 (396)
Q Consensus 184 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~ 242 (396)
.++....+.|+++++...++++...++..+..-.+.+..+|-. .|....+..++..+..
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence 4556677788888888888888887777777777777666643 2444555555555544
No 424
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=68.55 E-value=68 Score=26.68 Aligned_cols=96 Identities=7% Similarity=0.126 Sum_probs=50.6
Q ss_pred chhhHHHHHHHHHhcC--ChHHHHHHHHHHHHC-CCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHC-CCCCChhhHH
Q 016027 213 TMVTYTSLVKGYCKAG--DLEGASKILKMMISR-GFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIES-GYTPDRLTYH 288 (396)
Q Consensus 213 ~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~ 288 (396)
|..+...+++...... ....-.++.+.+... +-.++..+...++..++..+++.+-.+++...... +..-|...|.
T Consensus 163 d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~ 242 (292)
T PF13929_consen 163 DEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWA 242 (292)
T ss_pred ChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHH
Confidence 4555555555554411 122222233333221 23445556666666666666666666666665444 3444666666
Q ss_pred HHHHHHHhcCCHHHHHHHHH
Q 016027 289 ILLKILCKEDKLDLAIQVSK 308 (396)
Q Consensus 289 ~l~~~~~~~~~~~~a~~~~~ 308 (396)
.++......|+..-...+..
T Consensus 243 ~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 243 EFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHHHHHHcCCHHHHHHHhh
Confidence 66666666666555554444
No 425
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=68.54 E-value=66 Score=26.50 Aligned_cols=27 Identities=11% Similarity=0.150 Sum_probs=18.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 016027 178 NAIVYNTVIDGLVEAGRFEEVSGMMER 204 (396)
Q Consensus 178 ~~~~~~~l~~~~~~~~~~~~a~~~~~~ 204 (396)
++.....+...|.+.|++.+|...|-.
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~ 115 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLL 115 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHT
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHh
Confidence 566677777888888888777765543
No 426
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=68.47 E-value=40 Score=26.15 Aligned_cols=33 Identities=18% Similarity=0.044 Sum_probs=22.6
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 016027 281 TPDRLTYHILLKILCKEDKLDLAIQVSKEMKCR 313 (396)
Q Consensus 281 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 313 (396)
.|++.+|..++.++...|+.++|.++.+++...
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 566667776677777777777777776666654
No 427
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=68.04 E-value=20 Score=20.27 Aligned_cols=32 Identities=9% Similarity=0.032 Sum_probs=17.5
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 016027 330 CRMYKFDEASAEFEDMIRRGLVPHYLTFKRLN 361 (396)
Q Consensus 330 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 361 (396)
.+.|-..++..++++|.+.|+..+...+..++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 34455555566666665566555555555443
No 428
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=67.89 E-value=86 Score=27.60 Aligned_cols=57 Identities=19% Similarity=0.257 Sum_probs=40.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCChh--HHHHHHHHHH--ccCCHHHHHHHHHHHHHc
Q 016027 116 LNGWFRSKNVKDAERFWLEMRKENVTPNVV--TYGTLVEGYC--RLRRVDRAIRLVKEMRKE 173 (396)
Q Consensus 116 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~--~~~~~~~a~~~~~~~~~~ 173 (396)
+..+...+++..|.++|+.+... ++++.. .+..+..+|. ..-++.+|.+.++.....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34456789999999999999887 555554 4445555553 345778899988887665
No 429
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=67.76 E-value=16 Score=19.13 Aligned_cols=22 Identities=23% Similarity=0.265 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHH
Q 016027 35 TFVILIRRYARAGMVEAAIWTF 56 (396)
Q Consensus 35 ~~~~l~~~~~~~g~~~~A~~~~ 56 (396)
.|..++-.+-..|++++|+++|
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~ 24 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFF 24 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHH
Confidence 4555666666667777777663
No 430
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=67.72 E-value=13 Score=18.10 Aligned_cols=16 Identities=31% Similarity=0.196 Sum_probs=8.9
Q ss_pred CCHHHHHHHHHHHhhc
Q 016027 47 GMVEAAIWTFEFANNL 62 (396)
Q Consensus 47 g~~~~A~~~~~~~~~~ 62 (396)
|+.+.|..+|+++...
T Consensus 1 ~~~~~~r~i~e~~l~~ 16 (33)
T smart00386 1 GDIERARKIYERALEK 16 (33)
T ss_pred CcHHHHHHHHHHHHHH
Confidence 3455566666665554
No 431
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=67.30 E-value=64 Score=25.94 Aligned_cols=136 Identities=13% Similarity=0.175 Sum_probs=73.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 016027 115 LLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGR 194 (396)
Q Consensus 115 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 194 (396)
-+..|...-+|.-|-...++..+ ...+-.+++ -|.+..+..--.++.+-....+++-+.....+++ +...|+
T Consensus 136 tMEiyS~ttRFalaCN~s~KIiE-----PIQSRCAiL-Rysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GD 207 (333)
T KOG0991|consen 136 TMEIYSNTTRFALACNQSEKIIE-----PIQSRCAIL-RYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGD 207 (333)
T ss_pred HHHHHcccchhhhhhcchhhhhh-----hHHhhhHhh-hhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccch
Confidence 34445555555444444444432 111222222 2334444433344444444455555555555554 455777
Q ss_pred HHHHHHHHHHHHhc------------CCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHh
Q 016027 195 FEEVSGMMERFLVC------------EPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFS 260 (396)
Q Consensus 195 ~~~a~~~~~~~~~~------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 260 (396)
..+|+..++.-... --.|.+.....++..|. .+++++|.+++.++-+.|..|. ...+.+.+.+-
T Consensus 208 MRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~-Dii~~~FRv~K 283 (333)
T KOG0991|consen 208 MRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPE-DIITTLFRVVK 283 (333)
T ss_pred HHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHH-HHHHHHHHHHH
Confidence 77777766654321 12366666666666554 5678999999999888888754 34455555543
No 432
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=67.19 E-value=13 Score=29.41 Aligned_cols=58 Identities=28% Similarity=0.177 Sum_probs=47.5
Q ss_pred HHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccC
Q 016027 41 RRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQ 103 (396)
Q Consensus 41 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 103 (396)
....+.|+.+.|.++++++.... |.....|..+.....+.|+++.|.+.+++..+.+|
T Consensus 3 ~~~~~~~D~~aaaely~qal~la-----p~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp 60 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELA-----PEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDP 60 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcC-----chhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCc
Confidence 34567788888889999888874 77788888888888899999999999988887754
No 433
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=66.77 E-value=48 Score=24.31 Aligned_cols=41 Identities=27% Similarity=0.274 Sum_probs=17.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 016027 291 LKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCR 331 (396)
Q Consensus 291 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 331 (396)
+..+...++.-.|.++++.+.+.++..+..|.-.-+..+..
T Consensus 27 l~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e 67 (145)
T COG0735 27 LELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEE 67 (145)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHH
Confidence 33444444445555555555554444433333333333333
No 434
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=66.23 E-value=35 Score=22.52 Aligned_cols=52 Identities=12% Similarity=0.107 Sum_probs=31.4
Q ss_pred ChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-ChhHHHHHHHHHHccCC
Q 016027 108 TVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTP-NVVTYGTLVEGYCRLRR 159 (396)
Q Consensus 108 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 159 (396)
|......+...+...|++++|++.+-.+.+..... +...-..++..+...|.
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 66777777888888888888888887777663222 33444555555554444
No 435
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.97 E-value=71 Score=29.87 Aligned_cols=92 Identities=12% Similarity=0.176 Sum_probs=63.0
Q ss_pred HHHHcCCHHHHHHHHHHHhhcccccCCC-CchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHH
Q 016027 42 RYARAGMVEAAIWTFEFANNLDMVKNFD-SGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWF 120 (396)
Q Consensus 42 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 120 (396)
...+..++..++++|....+.-+..... .-...+..+.-+|.+..+.+.|.+++.++.+.+|. +..+--.+..+..
T Consensus 363 ~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~---~~l~q~~~~~~~~ 439 (872)
T KOG4814|consen 363 KLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQ---SPLCQLLMLQSFL 439 (872)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccc---cHHHHHHHHHHHH
Confidence 4556778888888888776642111000 11334667777888899999999999999887543 4555555666677
Q ss_pred hcCChhHHHHHHHHHH
Q 016027 121 RSKNVKDAERFWLEMR 136 (396)
Q Consensus 121 ~~~~~~~a~~~~~~~~ 136 (396)
..+..++|+.......
T Consensus 440 ~E~~Se~AL~~~~~~~ 455 (872)
T KOG4814|consen 440 AEDKSEEALTCLQKIK 455 (872)
T ss_pred HhcchHHHHHHHHHHH
Confidence 7888888888776654
No 436
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=65.62 E-value=72 Score=27.30 Aligned_cols=62 Identities=16% Similarity=0.178 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHhCCCCCCh----hHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 016027 126 KDAERFWLEMRKENVTPNV----VTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGL 189 (396)
Q Consensus 126 ~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 189 (396)
+++..+++++++. .|++ ..|..+++.....|.++.++.+|++++..|..|-...-..++..+
T Consensus 120 eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL 185 (353)
T PF15297_consen 120 EEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDIL 185 (353)
T ss_pred HHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 3445555554443 2232 244555555555555555555555555555555444444444443
No 437
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=65.09 E-value=43 Score=27.31 Aligned_cols=58 Identities=16% Similarity=0.032 Sum_probs=34.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHH----CC-CCCCHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 016027 323 TMLIHLLCRMYKFDEASAEFEDMIR----RG-LVPHYLTFKRLNDEFKKRGMTALAQKLCNVM 380 (396)
Q Consensus 323 ~~l~~~~~~~~~~~~a~~~~~~~~~----~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 380 (396)
..+..-|.+.|++++|.++|+.+.. .| ..+...+...+..++.+.|+.+..+.+.=++
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3455666777777777777776642 12 1233345556666677777777766655443
No 438
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=65.04 E-value=47 Score=23.57 Aligned_cols=45 Identities=16% Similarity=0.285 Sum_probs=26.6
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 016027 233 ASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIE 277 (396)
Q Consensus 233 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 277 (396)
..+-++.+...++.|++.....-+++|.+.+++..|.++|+-+..
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 334444445555666666666666666666666666666665544
No 439
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=65.01 E-value=23 Score=19.98 Aligned_cols=30 Identities=3% Similarity=0.060 Sum_probs=13.0
Q ss_pred hcCChhHHHHHHHHHHhCCCCCChhHHHHH
Q 016027 121 RSKNVKDAERFWLEMRKENVTPNVVTYGTL 150 (396)
Q Consensus 121 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 150 (396)
+.|-..++..++++|.+.|+..+...+..+
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~ 43 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEI 43 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHH
Confidence 334444444444444444444444444333
No 440
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=63.75 E-value=1.8e+02 Score=29.93 Aligned_cols=131 Identities=15% Similarity=0.145 Sum_probs=71.9
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------hcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHC-----
Q 016027 176 EPNAIVYNTVIDGLVEAGRFEEVSGMMERFL-------VCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISR----- 243 (396)
Q Consensus 176 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----- 243 (396)
++....|..+...+.+.|+.++|+..-.+.. ......+...|..+...+...+....|...+......
T Consensus 970 ~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ 1049 (1236)
T KOG1839|consen 970 PEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSS 1049 (1236)
T ss_pred hhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhcccc
Confidence 3445566677777778888887776544332 2222233445555555555566666666666655532
Q ss_pred --CCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCC-----C--CCChhhHHHHHHHHHhcCCHHHHHHH
Q 016027 244 --GFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESG-----Y--TPDRLTYHILLKILCKEDKLDLAIQV 306 (396)
Q Consensus 244 --~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~--~~~~~~~~~l~~~~~~~~~~~~a~~~ 306 (396)
..+|...+++.+-..+...+.++.|.++.+.+.... . -.+..++..+.+.+...+++..|...
T Consensus 1050 ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ 1121 (1236)
T KOG1839|consen 1050 GEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEH 1121 (1236)
T ss_pred CCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHH
Confidence 123334444544444555567777777777665431 0 12334555555555555555554443
No 441
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=63.50 E-value=94 Score=26.52 Aligned_cols=97 Identities=15% Similarity=0.045 Sum_probs=73.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhccC-CCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHH
Q 016027 75 FEILLDSLCKQGRVKAASEYFHKRKELDQ-SWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEG 153 (396)
Q Consensus 75 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 153 (396)
|.-=++-|.+..++..|...|.+..+..- +...+...|+.-..+-...|++..|+.=....+...+. ....|-.-..+
T Consensus 84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~-h~Ka~~R~Akc 162 (390)
T KOG0551|consen 84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPT-HLKAYIRGAKC 162 (390)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcc-hhhhhhhhhHH
Confidence 55567788899999999999999766532 22335677888888888899999999988888876433 45566666777
Q ss_pred HHccCCHHHHHHHHHHHHH
Q 016027 154 YCRLRRVDRAIRLVKEMRK 172 (396)
Q Consensus 154 ~~~~~~~~~a~~~~~~~~~ 172 (396)
+.....+.+|..+.++...
T Consensus 163 ~~eLe~~~~a~nw~ee~~~ 181 (390)
T KOG0551|consen 163 LLELERFAEAVNWCEEGLQ 181 (390)
T ss_pred HHHHHHHHHHHHHHhhhhh
Confidence 7788888888777766543
No 442
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=63.31 E-value=1.7e+02 Score=29.51 Aligned_cols=193 Identities=13% Similarity=0.131 Sum_probs=0.0
Q ss_pred hhhhhhccCchhHHHHHHHHhCCCC---CCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHH
Q 016027 2 IKVLAKAKEFDSAWCLLLDKIGGHE---VPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEIL 78 (396)
Q Consensus 2 ~~~~~~~g~~~~A~~~~~~~~~~~~---~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l 78 (396)
++.+...++|.+|..+.++-.=.-. +-+ +..|..-+..+.++=+--+-+.+|-.-.+.. ......|...
T Consensus 701 ir~~Ld~~~Y~~Af~~~RkhRIdlNll~Dh~---p~~Fl~ni~~Fv~qi~~~~~lnLFls~L~~E-----Dvt~tmY~~~ 772 (928)
T PF04762_consen 701 IRKLLDAKDYKEAFELCRKHRIDLNLLYDHN---PEQFLENIELFVEQIKDVDYLNLFLSSLRNE-----DVTKTMYKDT 772 (928)
T ss_pred HHHHHhhccHHHHHHHHHHhccccceEEECC---HHHHHHHHHHHHHhcCCHHHHHHHHHhcccc-----cccccccccc
Q ss_pred H------------HHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcC--ChhHHHHHHHHHHhCCCCCCh
Q 016027 79 L------------DSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSK--NVKDAERFWLEMRKENVTPNV 144 (396)
Q Consensus 79 ~------------~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~ 144 (396)
. ......++.....+.+......... .......++.+|++.+ ++++|+.+..++.+.+...-.
T Consensus 773 ~~~~~~~~~~~~~~~~~~~~KVn~ICdair~~l~~~~~---~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~~~~~ae 849 (928)
T PF04762_consen 773 YPPSSEAQPNSNSSTASSESKVNKICDAIRKALEKPKD---KDKYLQPILTAYVKKSPPDLEEALQLIKELREEDPESAE 849 (928)
T ss_pred cccccccccccccCCCccccHHHHHHHHHHHHhccccc---chhhHHHHHHHHHhcCchhHHHHHHHHHHHHhcChHHHH
Q ss_pred hHHHHHHHHHHccCCHHHHHHHHHH----HHHcCCCCCHHHHHHHHHHHHHc-------------CCHHHHHHHHHHH
Q 016027 145 VTYGTLVEGYCRLRRVDRAIRLVKE----MRKEGIEPNAIVYNTVIDGLVEA-------------GRFEEVSGMMERF 205 (396)
Q Consensus 145 ~~~~~l~~~~~~~~~~~~a~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~-------------~~~~~a~~~~~~~ 205 (396)
.+...++-..--..-++.|+.+|+- |..+.-.-|+.-|--+++-+.+. +++++|++-+.++
T Consensus 850 ~alkyl~fLvDvn~Ly~~ALG~YDl~Lal~VAq~SQkDPKEYLPfL~~L~~l~~~~rry~ID~hLkRy~kAL~~L~~~ 927 (928)
T PF04762_consen 850 EALKYLCFLVDVNKLYDVALGTYDLELALMVAQQSQKDPKEYLPFLQELQKLPPLYRRYKIDDHLKRYEKALRHLSAC 927 (928)
T ss_pred HHHhHheeeccHHHHHHHHhhhcCHHHHHHHHHHhccChHHHHHHHHHHHhCChhheeeeHhhhhCCHHHHHHHHHhh
No 443
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=63.23 E-value=17 Score=25.40 Aligned_cols=93 Identities=12% Similarity=0.005 Sum_probs=48.7
Q ss_pred hhccCchhHHHHHHHHhCCCC-CCC-------CCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhccccc-CC-CCc----
Q 016027 6 AKAKEFDSAWCLLLDKIGGHE-VPD-------FVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVK-NF-DSG---- 71 (396)
Q Consensus 6 ~~~g~~~~A~~~~~~~~~~~~-~p~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~-~~~---- 71 (396)
.+.|-+++|..-+..++.... .|. .++.-.+..|..++...|++++++.--+.+..--... .+ ...
T Consensus 20 l~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklW 99 (144)
T PF12968_consen 20 LQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLW 99 (144)
T ss_dssp HHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhH
Confidence 456778888888877764222 222 1223345577888999999988776555444310000 01 111
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHH
Q 016027 72 ASLFEILLDSLCKQGRVKAASEYFHKR 98 (396)
Q Consensus 72 ~~~~~~l~~~~~~~~~~~~A~~~~~~~ 98 (396)
+.+...-..++...|+.++|+..|+..
T Consensus 100 IaaVfsra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 100 IAAVFSRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 222233344555667777777777653
No 444
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=62.95 E-value=95 Score=26.37 Aligned_cols=96 Identities=13% Similarity=0.079 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCCCchhhHHHHHH-HHHhcCChHHHHHHHHHHHHCCCCCChh----
Q 016027 180 IVYNTVIDGLVEAGRFEEVSGMMERFLV----CEPGPTMVTYTSLVK-GYCKAGDLEGASKILKMMISRGFLPSPT---- 250 (396)
Q Consensus 180 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~---- 250 (396)
..+......|++.|+.+.|.+.+.+..+ .|...|+..+..-+. .|....-..+-++..+.+.+.|...+..
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK 184 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Confidence 3444555666777777766666555433 234444333332222 2222222334444444555555433322
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHH
Q 016027 251 TYNYFFRYFSKFGKVEDAMNLYRKMIE 277 (396)
Q Consensus 251 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 277 (396)
+|..+ .|....++.+|-.+|-+...
T Consensus 185 vY~Gl--y~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 185 VYQGL--YCMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHH--HHHHHHhHHHHHHHHHHHcc
Confidence 22221 23344566666666665543
No 445
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=62.94 E-value=69 Score=24.78 Aligned_cols=61 Identities=13% Similarity=0.121 Sum_probs=27.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHH-HHHhcC--ChhHHHHHHHHHHh
Q 016027 77 ILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLN-GWFRSK--NVKDAERFWLEMRK 137 (396)
Q Consensus 77 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~--~~~~a~~~~~~~~~ 137 (396)
..+-.....|++++|.+-++++.+.-...+.-...|..+.. +++..+ .+-+|.-++.-+..
T Consensus 34 ~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~ 97 (204)
T COG2178 34 GEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKD 97 (204)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhc
Confidence 34444455666777766666654432111212233444443 233332 34455555554443
No 446
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=62.73 E-value=21 Score=29.66 Aligned_cols=55 Identities=11% Similarity=0.058 Sum_probs=45.9
Q ss_pred hhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcc
Q 016027 5 LAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLD 63 (396)
Q Consensus 5 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 63 (396)
..+.|+.++|..+|+.+++. .|+ .++++..++...-..++.-+|-++|-++....
T Consensus 126 ~~~~Gk~ekA~~lfeHAlal--aP~--~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtis 180 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALAL--APT--NPQILIEMGQFREMHNEIVEADQCYVKALTIS 180 (472)
T ss_pred HHhccchHHHHHHHHHHHhc--CCC--CHHHHHHHhHHHHhhhhhHhhhhhhheeeeeC
Confidence 34789999999999999984 565 36688888888888889999999999888764
No 447
>PHA02875 ankyrin repeat protein; Provisional
Probab=62.26 E-value=1.2e+02 Score=27.08 Aligned_cols=201 Identities=12% Similarity=0.130 Sum_probs=96.4
Q ss_pred HHHHHHHhhccCCCCCChHH--HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChh--HHHHHHHHHHccCCHHHHHHHH
Q 016027 92 SEYFHKRKELDQSWAPTVRV--YNILLNGWFRSKNVKDAERFWLEMRKENVTPNVV--TYGTLVEGYCRLRRVDRAIRLV 167 (396)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~ 167 (396)
.++++.+.+. |..|+... ..+.+..++..|+.+- .+.+.+.|..|+.. .....+...+..|+.+.+..++
T Consensus 15 ~~iv~~Ll~~--g~~~n~~~~~g~tpL~~A~~~~~~~~----v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll 88 (413)
T PHA02875 15 LDIARRLLDI--GINPNFEIYDGISPIKLAMKFRDSEA----IKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELL 88 (413)
T ss_pred HHHHHHHHHC--CCCCCccCCCCCCHHHHHHHcCCHHH----HHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHH
Confidence 3445555554 54554432 3345566667777654 44445566555432 1223444556778877655544
Q ss_pred HHHHHcCCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhh--HHHHHHHHHhcCChHHHHHHHHHHHH
Q 016027 168 KEMRKEGIEPNAI---VYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVT--YTSLVKGYCKAGDLEGASKILKMMIS 242 (396)
Q Consensus 168 ~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~ 242 (396)
+.|...+.. .-...+...+..|+.+ +++.+.+.|..++... -.+.+...+..|+.+-+..++ +
T Consensus 89 ----~~~~~~~~~~~~~g~tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll----~ 156 (413)
T PHA02875 89 ----DLGKFADDVFYKDGMTPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLI----D 156 (413)
T ss_pred ----HcCCcccccccCCCCCHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH----h
Confidence 443221110 1122334445567664 4444455555443211 122344555677766544443 4
Q ss_pred CCCCCC---hhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhh---HHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 016027 243 RGFLPS---PTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLT---YHILLKILCKEDKLDLAIQVSKEMKCRGCD 316 (396)
Q Consensus 243 ~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 316 (396)
.|..++ ..-.+.+.. .+..|+.+ +.+.+.+.|..++... ....+......|+.+ +.+.+.+.|..
T Consensus 157 ~g~~~~~~d~~g~TpL~~-A~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~gad 227 (413)
T PHA02875 157 HKACLDIEDCCGCTPLII-AMAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLFIKRGAD 227 (413)
T ss_pred cCCCCCCCCCCCCCHHHH-HHHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHCCcC
Confidence 443332 223333333 34456654 3444555665554322 123444345566654 44555667766
Q ss_pred CCh
Q 016027 317 IDL 319 (396)
Q Consensus 317 ~~~ 319 (396)
++.
T Consensus 228 ~n~ 230 (413)
T PHA02875 228 CNI 230 (413)
T ss_pred cch
Confidence 653
No 448
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=62.20 E-value=34 Score=20.94 Aligned_cols=30 Identities=13% Similarity=0.112 Sum_probs=12.7
Q ss_pred hHHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 016027 145 VTYGTLVEGYCRLRRVDRAIRLVKEMRKEG 174 (396)
Q Consensus 145 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 174 (396)
..++.++..+++-.-.+.++..+.+..+.|
T Consensus 9 ~l~~Ql~el~Aed~AieDtiy~L~~al~~g 38 (65)
T PF09454_consen 9 PLSNQLYELVAEDHAIEDTIYYLDRALQRG 38 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 333444444444444444444444444443
No 449
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=61.83 E-value=68 Score=26.91 Aligned_cols=58 Identities=19% Similarity=0.314 Sum_probs=43.1
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 016027 269 MNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCR 331 (396)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 331 (396)
.++|+.+.+.++.|.-..|..+.-.+.+.=.+...+.+|+.+.. |+.-|..|+..|+.
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCcs 320 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICCS 320 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHHH
Confidence 46778888888888888888887777787788888888888875 33346666666553
No 450
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=60.95 E-value=98 Score=25.82 Aligned_cols=133 Identities=10% Similarity=0.050 Sum_probs=82.5
Q ss_pred hHHHHHHHHHHHH-CCCCCChhhHHHHHHHHhccCC--HHHHHHHHHHHHHC-CCCCChhhHHHHHHHHHhcCCHHHHHH
Q 016027 230 LEGASKILKMMIS-RGFLPSPTTYNYFFRYFSKFGK--VEDAMNLYRKMIES-GYTPDRLTYHILLKILCKEDKLDLAIQ 305 (396)
Q Consensus 230 ~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~ 305 (396)
..+|..+|+.... ..+--|..+...+++......+ ...-.++.+-+... +-.++..+...++..++..+++..-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 4556666653221 1234466677777776654221 12222223333322 346677888888999999999999999
Q ss_pred HHHHHHHc-CCCCChhhHHHHHHHHHhcCChhHHHHHHHH-----HHHCCCCCCHHHHHHHHH
Q 016027 306 VSKEMKCR-GCDIDLDTSTMLIHLLCRMYKFDEASAEFED-----MIRRGLVPHYLTFKRLND 362 (396)
Q Consensus 306 ~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-----~~~~~~~p~~~~~~~l~~ 362 (396)
+|...... ++.-|...|..++......|+..-..++.++ +.+.++..+...-..+-.
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~ 286 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSE 286 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHH
Confidence 99888765 5666889999999999999997766666554 223445545444444433
No 451
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=60.27 E-value=1e+02 Score=25.90 Aligned_cols=70 Identities=19% Similarity=0.230 Sum_probs=34.7
Q ss_pred hcCChHHHHHHHHHHHHCCCCCChh----hHHHHHHHHhccCCHH-HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH
Q 016027 226 KAGDLEGASKILKMMISRGFLPSPT----TYNYFFRYFSKFGKVE-DAMNLYRKMIESGYTPDRLTYHILLKILCKEDKL 300 (396)
Q Consensus 226 ~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 300 (396)
+...+++.....++-.+..--|++. .|..++++-.-+.+-+ -|.+.+++ ..+|.-|+.+++..|+.
T Consensus 267 ~e~p~~evi~~VKee~k~~nlPe~eVi~ivWs~iMsaveWnKkeelva~qalrh---------lK~yaPLL~af~s~g~s 337 (412)
T KOG2297|consen 267 EEDPVKEVILYVKEEMKRNNLPETEVIGIVWSGIMSAVEWNKKEELVAEQALRH---------LKQYAPLLAAFCSQGQS 337 (412)
T ss_pred cCCCHHHHHHHHHHHHHhcCCCCceEEeeeHhhhhHHHhhchHHHHHHHHHHHH---------HHhhhHHHHHHhcCChH
Confidence 3344555555554444333344554 3555554432221111 12333332 34577788888888877
Q ss_pred HHHH
Q 016027 301 DLAI 304 (396)
Q Consensus 301 ~~a~ 304 (396)
+-.+
T Consensus 338 EL~L 341 (412)
T KOG2297|consen 338 ELEL 341 (412)
T ss_pred HHHH
Confidence 6543
No 452
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=60.22 E-value=23 Score=29.43 Aligned_cols=27 Identities=22% Similarity=0.399 Sum_probs=12.7
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCC
Q 016027 149 TLVEGYCRLRRVDRAIRLVKEMRKEGI 175 (396)
Q Consensus 149 ~l~~~~~~~~~~~~a~~~~~~~~~~~~ 175 (396)
..|....+.||+++|++++++..+.|+
T Consensus 262 ~aI~~AVk~gDi~KAL~LldEAe~LG~ 288 (303)
T PRK10564 262 QAIKQAVKKGDVDKALKLLDEAERLGS 288 (303)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 444444444444444444444444443
No 453
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=60.14 E-value=1.4e+02 Score=27.19 Aligned_cols=106 Identities=15% Similarity=0.056 Sum_probs=52.1
Q ss_pred HHHhcCChHHHHHHHHHHHHC---CCCCC-----hhhHHHHHHHHhccCCHHHHHHHHHHHHH-------CCCCCCh---
Q 016027 223 GYCKAGDLEGASKILKMMISR---GFLPS-----PTTYNYFFRYFSKFGKVEDAMNLYRKMIE-------SGYTPDR--- 284 (396)
Q Consensus 223 ~~~~~~~~~~a~~~~~~~~~~---~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~--- 284 (396)
.+.-.|++.+|.+++...--. |...+ -..+|.+.-.+...|.+..+..+|.+..+ .|++|..
T Consensus 249 ~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~t 328 (696)
T KOG2471|consen 249 LEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFT 328 (696)
T ss_pred HHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCccee
Confidence 344556666666665443211 11111 11124444444555666665555555543 2333221
Q ss_pred --------hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 016027 285 --------LTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLC 330 (396)
Q Consensus 285 --------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 330 (396)
.+|| ..-.|...|++-.|.+.|.+.... +.-++..|-.+..+|.
T Consensus 329 ls~nks~eilYN-cG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 329 LSQNKSMEILYN-CGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCI 380 (696)
T ss_pred hhcccchhhHHh-hhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHH
Confidence 1222 233455667777777777666543 2236666666666664
No 454
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=59.75 E-value=22 Score=29.58 Aligned_cols=42 Identities=14% Similarity=0.160 Sum_probs=31.0
Q ss_pred CCChHH-HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHH
Q 016027 106 APTVRV-YNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTY 147 (396)
Q Consensus 106 ~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 147 (396)
.|+... |+..|....+.||+++|+.++++..+.|..--..+|
T Consensus 253 ~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 253 LNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 345444 568888889999999999999999888866333344
No 455
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=59.72 E-value=14 Score=26.35 Aligned_cols=30 Identities=20% Similarity=0.423 Sum_probs=16.2
Q ss_pred cCChHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 016027 227 AGDLEGASKILKMMISRGFLPSPTTYNYFFRY 258 (396)
Q Consensus 227 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 258 (396)
.|.-.+|..+|..|.+.|-+||. |+.|+..
T Consensus 108 ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 34445566666666666655542 4444443
No 456
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=59.26 E-value=1.1e+02 Score=25.98 Aligned_cols=57 Identities=18% Similarity=0.377 Sum_probs=33.0
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 016027 149 TLVEGYCRLRRVDRAIRLVKEMRKEGIEPNA---IVYNTVIDGLVEAGRFEEVSGMMERFLV 207 (396)
Q Consensus 149 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 207 (396)
.|.-+..+.|+..+|.+.++.+.+. .|-. .....++.++....-+.++..++.+..+
T Consensus 280 RLAMCARklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakYDd 339 (556)
T KOG3807|consen 280 RLAMCARKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKYDD 339 (556)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4555556677777777777776655 2211 1233566666666666666555555444
No 457
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=59.25 E-value=26 Score=18.66 Aligned_cols=28 Identities=21% Similarity=0.128 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 016027 35 TFVILIRRYARAGMVEAAIWTFEFANNL 62 (396)
Q Consensus 35 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 62 (396)
+|..|+..-...+++++|++-|.++...
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 5667777778888888888777777664
No 458
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=58.59 E-value=1.2e+02 Score=26.20 Aligned_cols=19 Identities=11% Similarity=-0.134 Sum_probs=11.6
Q ss_pred HHhcCChhHHHHHHHHHHh
Q 016027 119 WFRSKNVKDAERFWLEMRK 137 (396)
Q Consensus 119 ~~~~~~~~~a~~~~~~~~~ 137 (396)
|...++++.|+.+|...+-
T Consensus 193 ciglk~fe~Al~~~e~~v~ 211 (422)
T KOG2582|consen 193 CIGLKRFERALYLLEICVT 211 (422)
T ss_pred eeccccHHHHHHHHHHHHh
Confidence 3445667777766666553
No 459
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=58.44 E-value=98 Score=25.05 Aligned_cols=56 Identities=11% Similarity=0.071 Sum_probs=27.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHc-cCCHHHHHHHHHHH
Q 016027 115 LLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCR-LRRVDRAIRLVKEM 170 (396)
Q Consensus 115 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~ 170 (396)
++..+-+.++++++...++++...+...+..--+.+..+|-. .|....+++++..+
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~ 63 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSI 63 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhH
Confidence 444555566666666666666665555555555555444422 23333444444443
No 460
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=58.30 E-value=1.1e+02 Score=25.68 Aligned_cols=114 Identities=13% Similarity=0.088 Sum_probs=0.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHcc
Q 016027 78 LLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRL 157 (396)
Q Consensus 78 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 157 (396)
++..+.+.++..+..+.+..+. ....-...+..+...|+|..|++++.+..+ -...+..+--.-.-.
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~--------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~-----~l~~l~~~~c~~~L~ 170 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIK--------TVQQTQSRLQELLEEGDYPGALDLIEECQQ-----LLEELKGYSCVRHLS 170 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----HHHhcccchHHHHHh
Q ss_pred CCHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 016027 158 RRVDRAIRLVKEMRKEG-----IEPNAIVYNTVIDGLVEAGRFEEVSGMMER 204 (396)
Q Consensus 158 ~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 204 (396)
.++.+.....+.+.+.. ...|+..|..+..+|.-.|+.+.+.+-+..
T Consensus 171 ~~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dkl~~ 222 (291)
T PF10475_consen 171 SQLQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDKLQM 222 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHHH
No 461
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.90 E-value=1.7e+02 Score=27.64 Aligned_cols=92 Identities=14% Similarity=0.102 Sum_probs=70.5
Q ss_pred hhhhccCchhHHHHHHHHhCCCCCC---CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHH
Q 016027 4 VLAKAKEFDSAWCLLLDKIGGHEVP---DFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLD 80 (396)
Q Consensus 4 ~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 80 (396)
...+..+|..+.+.|..-++--+.. +.+ ......+.-+|....+.|+|.+.++++.+.+ |.++..-..+..
T Consensus 363 ~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~F-aK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d-----~~~~l~q~~~~~ 436 (872)
T KOG4814|consen 363 KLFKMEKYVVSIRFYKLSLKDIISDNYSDRF-AKIQRALQVCYLKLEQLDNAVEVYQEAEEVD-----RQSPLCQLLMLQ 436 (872)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhhhhHH-HHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc-----cccHHHHHHHHH
Confidence 3456678999999998877643211 111 3466678889999999999999999999986 667777777888
Q ss_pred HHHHcCChHHHHHHHHHHhhc
Q 016027 81 SLCKQGRVKAASEYFHKRKEL 101 (396)
Q Consensus 81 ~~~~~~~~~~A~~~~~~~~~~ 101 (396)
+....|.-++|+.........
T Consensus 437 ~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 437 SFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHhcchHHHHHHHHHHHhh
Confidence 888899999999888776543
No 462
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=57.33 E-value=1.3e+02 Score=26.23 Aligned_cols=127 Identities=10% Similarity=0.038 Sum_probs=69.1
Q ss_pred CCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHH
Q 016027 69 DSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYG 148 (396)
Q Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 148 (396)
|-...++..+...+..+|+.+.|.++++++.-. =..++......+.....-..+. ..-...-|...|.
T Consensus 37 PyHidtLlqls~v~~~~gd~~~A~~lleRALf~------~e~~~~~~F~~~~~~~~~g~~r------L~~~~~eNR~ffl 104 (360)
T PF04910_consen 37 PYHIDTLLQLSEVYRQQGDHAQANDLLERALFA------FERAFHPSFSPFRSNLTSGNCR------LDYRRPENRQFFL 104 (360)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH------HHHHHHHHhhhhhcccccCccc------cCCccccchHHHH
Confidence 777788888888888888888888888876532 0001111110000000000000 0000111333333
Q ss_pred H---HHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHh
Q 016027 149 T---LVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLV-EAGRFEEVSGMMERFLV 207 (396)
Q Consensus 149 ~---l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~ 207 (396)
+ .+..+.+.|.+..|+++.+-+...+..-|+.....+|+.|+ +.++++--+++.+....
T Consensus 105 al~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 105 ALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 3 34556677788888888877777754446666666666553 56667767776666544
No 463
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.19 E-value=1.5e+02 Score=26.86 Aligned_cols=370 Identities=13% Similarity=0.017 Sum_probs=0.0
Q ss_pred hhhhccCchhHHHHHHHHhCCCC-CCCCCCh--hHHHHHHHHHHHcC-CHHHHHHHHHHHhhcccccCCCCchhHHHHHH
Q 016027 4 VLAKAKEFDSAWCLLLDKIGGHE-VPDFVSK--DTFVILIRRYARAG-MVEAAIWTFEFANNLDMVKNFDSGASLFEILL 79 (396)
Q Consensus 4 ~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~--~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~ 79 (396)
.+....+++.|..-++++..... -|++.+. .++..+...|.... .+..+..+++++++. .....--.......|+
T Consensus 56 L~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaiel-sq~~p~wsckllfQLa 134 (629)
T KOG2300|consen 56 LLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIEL-SQSVPYWSCKLLFQLA 134 (629)
T ss_pred HHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHH-hcCCchhhHHHHHHHH
Q ss_pred HHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHh---------cCChhHHHHHHHHHHhCCCCCC-------
Q 016027 80 DSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFR---------SKNVKDAERFWLEMRKENVTPN------- 143 (396)
Q Consensus 80 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~------- 143 (396)
....-..++..|.+++..-.. ...+-...|..++..+.. ..++..+.....++.+. ..+|
T Consensus 135 ql~~idkD~~sA~elLavga~---sAd~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n-~~sdk~~~E~L 210 (629)
T KOG2300|consen 135 QLHIIDKDFPSALELLAVGAE---SADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQN-ISSDKTQKEML 210 (629)
T ss_pred HHHhhhccchhHHHHHhcccc---ccchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhc-cCCChHHHHHH
Q ss_pred -hhHHHHHHHHHHccCCHHHHHHHHHHHHHc---CCCC-------------------------CHHHHHHHHHHHHHcCC
Q 016027 144 -VVTYGTLVEGYCRLRRVDRAIRLVKEMRKE---GIEP-------------------------NAIVYNTVIDGLVEAGR 194 (396)
Q Consensus 144 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~-------------------------~~~~~~~l~~~~~~~~~ 194 (396)
....+.-+.-|...|+...+...++++.+. +.++ ..-+|..-...-...|-
T Consensus 211 kvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy 290 (629)
T KOG2300|consen 211 KVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGY 290 (629)
T ss_pred HHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHH
Q ss_pred HHHHHHHHHHHHhcCCC-------------CchhhHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCC--------hhhH
Q 016027 195 FEEVSGMMERFLVCEPG-------------PTMVTYTSLVKGYCKAGDLEGASKILKMMISR-GFLPS--------PTTY 252 (396)
Q Consensus 195 ~~~a~~~~~~~~~~~~~-------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~--------~~~~ 252 (396)
+++|.++-++++..-.+ ....+...++-+-.-.|++.+|++-+.+|.+- .-.|. ....
T Consensus 291 ~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih 370 (629)
T KOG2300|consen 291 FKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIH 370 (629)
T ss_pred HHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHH
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhH--HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh------hhHHH
Q 016027 253 NYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTY--HILLKILCKEDKLDLAIQVSKEMKCRGCDIDL------DTSTM 324 (396)
Q Consensus 253 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~ 324 (396)
..+...++..+.++.|+..|....+.--..|...+ ..+...|.+.|+.+.--++++.+-..+-.+-. ..+-.
T Consensus 371 ~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v 450 (629)
T KOG2300|consen 371 MLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYV 450 (629)
T ss_pred HHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHH
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHHcCCchHHHHHHH
Q 016027 325 LIHLLCRMYKFDEASAEFEDMIRRG-----LVPHYLTFKRLNDEFKKRGMTALAQKLCN 378 (396)
Q Consensus 325 l~~~~~~~~~~~~a~~~~~~~~~~~-----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 378 (396)
-.-.....+++.+|...+.+-++.. .+...-....+...+...|+..++.+...
T Consensus 451 ~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvr 509 (629)
T KOG2300|consen 451 YGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVR 509 (629)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccc
No 464
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=56.93 E-value=42 Score=20.29 Aligned_cols=49 Identities=22% Similarity=0.175 Sum_probs=28.5
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH-----HHcCCchHHHHHH
Q 016027 329 LCRMYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEF-----KKRGMTALAQKLC 377 (396)
Q Consensus 329 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~-----~~~g~~~~A~~~~ 377 (396)
+...|++=+|-++++.+=.....|....+..+|+.. .+.|+.+.|.+++
T Consensus 9 l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l~ 62 (62)
T PF03745_consen 9 LFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRLL 62 (62)
T ss_dssp HHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHHH
T ss_pred HHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHhC
Confidence 455677777777777775432233445555665533 4667777776654
No 465
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.12 E-value=2.2e+02 Score=28.36 Aligned_cols=26 Identities=12% Similarity=0.257 Sum_probs=13.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhh
Q 016027 75 FEILLDSLCKQGRVKAASEYFHKRKE 100 (396)
Q Consensus 75 ~~~l~~~~~~~~~~~~A~~~~~~~~~ 100 (396)
|..|+..|...|+.++|++++.+...
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhc
Confidence 44445555555555555555554443
No 466
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=55.48 E-value=1.5e+02 Score=26.35 Aligned_cols=88 Identities=15% Similarity=0.168 Sum_probs=54.7
Q ss_pred CCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--------HHHcCCHHHHHHHHHHHHhcC
Q 016027 138 ENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDG--------LVEAGRFEEVSGMMERFLVCE 209 (396)
Q Consensus 138 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~~~~~~a~~~~~~~~~~~ 209 (396)
..+.||..+.+-+...++..-..+-...+|+-..+.+ .|-...+.+++-. -.+...-++++++++.|-..-
T Consensus 177 kkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqa-DPF~vffLaliiLiNake~ILq~~sdsKEe~ikfLenmp~~L 255 (669)
T KOG3636|consen 177 KKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQA-DPFLVFFLALIILINAKEEILQVKSDSKEEAIKFLENMPAQL 255 (669)
T ss_pred cccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CceehHHHHHHHhcccHHHHhhhccccHHHHHHHHHcCchhc
Confidence 4577888888888888777777777888888877775 4443333333311 123445677888887765432
Q ss_pred CCCchhhHHHHHHHHHh
Q 016027 210 PGPTMVTYTSLVKGYCK 226 (396)
Q Consensus 210 ~~~~~~~~~~l~~~~~~ 226 (396)
.-.|+.-+..|...|+.
T Consensus 256 ~~eDvpDffsLAqyY~~ 272 (669)
T KOG3636|consen 256 SVEDVPDFFSLAQYYSD 272 (669)
T ss_pred ccccchhHHHHHHHHhh
Confidence 22355556666666653
No 467
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=55.00 E-value=89 Score=24.42 Aligned_cols=27 Identities=15% Similarity=-0.023 Sum_probs=15.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 016027 287 YHILLKILCKEDKLDLAIQVSKEMKCR 313 (396)
Q Consensus 287 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 313 (396)
.+.+++.+.-.|+++.|-+.|.-+...
T Consensus 44 L~~lLh~~llr~d~~rA~Raf~lLiR~ 70 (199)
T PF04090_consen 44 LTDLLHLCLLRGDWDRAYRAFGLLIRC 70 (199)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHcC
Confidence 445555556666666666666666543
No 468
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=53.89 E-value=46 Score=23.32 Aligned_cols=49 Identities=16% Similarity=0.200 Sum_probs=32.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCch
Q 016027 323 TMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFKKRGMTA 371 (396)
Q Consensus 323 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 371 (396)
..++..+...+..-.|.++++.+.+.+...+..|....++.+.+.|-..
T Consensus 11 ~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli~ 59 (120)
T PF01475_consen 11 LAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLIR 59 (120)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeEE
Confidence 3455666666667778888888887776777777666667777766543
No 469
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=53.83 E-value=78 Score=22.52 Aligned_cols=92 Identities=16% Similarity=0.134 Sum_probs=0.0
Q ss_pred hhhhhccCchhHHHHHHHHhCCCC-CCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHH
Q 016027 3 KVLAKAKEFDSAWCLLLDKIGGHE-VPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDS 81 (396)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 81 (396)
..+-..|.-..-..++++++..-. .+..-+..-|..+--.|++.-+ .+.++|..+...+ -....+..|...+..
T Consensus 34 ~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~--~~~~if~~l~~~~---IG~~~A~fY~~wA~~ 108 (126)
T PF08311_consen 34 ENYPSGGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLSS--DPREIFKFLYSKG---IGTKLALFYEEWAEF 108 (126)
T ss_dssp HHCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBS--HHHHHHHHHHHHT---TSTTBHHHHHHHHHH
T ss_pred HHCCCCCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHcc--CHHHHHHHHHHcC---ccHHHHHHHHHHHHH
Q ss_pred HHHcCChHHHHHHHHHHh
Q 016027 82 LCKQGRVKAASEYFHKRK 99 (396)
Q Consensus 82 ~~~~~~~~~A~~~~~~~~ 99 (396)
+...|++++|.++|+...
T Consensus 109 le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 109 LEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHTT-HHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHhhC
No 470
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=52.46 E-value=1.2e+02 Score=24.25 Aligned_cols=19 Identities=16% Similarity=0.244 Sum_probs=8.7
Q ss_pred HHHHccCCHHHHHHHHHHH
Q 016027 152 EGYCRLRRVDRAIRLVKEM 170 (396)
Q Consensus 152 ~~~~~~~~~~~a~~~~~~~ 170 (396)
+.....|+.++|++....+
T Consensus 72 r~~I~~G~Ie~Aie~in~l 90 (228)
T KOG2659|consen 72 RRAIEEGQIEEAIEKVNQL 90 (228)
T ss_pred HHHHHhccHHHHHHHHHHh
Confidence 3334444555444444444
No 471
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=52.31 E-value=1.3e+02 Score=24.72 Aligned_cols=42 Identities=19% Similarity=0.186 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHH
Q 016027 35 TFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSL 82 (396)
Q Consensus 35 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 82 (396)
.+..+++.+.+.|....|..+.+..... +.-..+...++...
T Consensus 84 ~L~~iL~~lL~~~~~~~a~~i~~~y~~l------~~F~~~LE~LLh~v 125 (258)
T PF07064_consen 84 FLHHILRHLLRRNLDEEALEIASKYRSL------PYFSHALELLLHTV 125 (258)
T ss_pred chHHHHHHHHhcCCcHHHHHHHHHhccC------CCcHHHHHHHHHHH
Confidence 4667778888888888888777776654 44444455555443
No 472
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=52.30 E-value=1.8e+02 Score=27.59 Aligned_cols=91 Identities=16% Similarity=0.186 Sum_probs=59.0
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHcCCHH------HHHHHHHHHHhcCCCCchhhHHHH
Q 016027 149 TLVEGYCRLRRVDRAIRLVKEMRKEG--IEPNAIVYNTVIDGLVEAGRFE------EVSGMMERFLVCEPGPTMVTYTSL 220 (396)
Q Consensus 149 ~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~------~a~~~~~~~~~~~~~~~~~~~~~l 220 (396)
.|..+|...|++..+.++++.+.... -+.-...++..++...+.|.++ .|.+.+++.. ..-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 78899999999999999999888652 2333456778888888888754 3444444443 45567778777
Q ss_pred HHHHHhcCChHHHHHHHHHHHH
Q 016027 221 VKGYCKAGDLEGASKILKMMIS 242 (396)
Q Consensus 221 ~~~~~~~~~~~~a~~~~~~~~~ 242 (396)
+.+...--.-....-++.+++.
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHHH
Confidence 7665543333333344444443
No 473
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=52.21 E-value=1.4e+02 Score=24.92 Aligned_cols=127 Identities=13% Similarity=0.089 Sum_probs=68.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCChhH-------HHHHHHHHHccCCHHHHHHHHHHHHH----cCCCCCHHHH
Q 016027 114 ILLNGWFRSKNVKDAERFWLEMRKENVTPNVVT-------YGTLVEGYCRLRRVDRAIRLVKEMRK----EGIEPNAIVY 182 (396)
Q Consensus 114 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~ 182 (396)
.+.+-..+.+++++|+..|.++...|+..+..+ ...+...|...|++..--+......+ ...+......
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kii 87 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKII 87 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHH
Confidence 455566778888889888888888887666544 34466667777766654444433222 1112223334
Q ss_pred HHHHHHHHH-cCCHHHHHHHHHHHHhcCCCCc-----hhhHHHHHHHHHhcCChHHHHHHHHHH
Q 016027 183 NTVIDGLVE-AGRFEEVSGMMERFLVCEPGPT-----MVTYTSLVKGYCKAGDLEGASKILKMM 240 (396)
Q Consensus 183 ~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~ 240 (396)
..++..+.. ...++..+.+.....+-..... ...-.-++..+.+.|.+.+|..+...+
T Consensus 88 rtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~l 151 (421)
T COG5159 88 RTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPL 151 (421)
T ss_pred HHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 444444432 2335555555555443211111 111123556666777777776655443
No 474
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=52.03 E-value=60 Score=22.48 Aligned_cols=46 Identities=22% Similarity=0.209 Sum_probs=26.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChh
Q 016027 291 LKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFD 336 (396)
Q Consensus 291 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 336 (396)
+..+...+..-.|.++++.+.+.++.++..|.-..+..+...|-..
T Consensus 7 l~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 7 LEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 3444444555566666777666655556555555566666666544
No 475
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=52.01 E-value=1.6e+02 Score=25.69 Aligned_cols=47 Identities=15% Similarity=0.055 Sum_probs=29.4
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHH
Q 016027 120 FRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMR 171 (396)
Q Consensus 120 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 171 (396)
...+|++....++.+ .+-...++..+...+...|+.+.|.+++++.+
T Consensus 21 v~~~Dp~~l~~ll~~-----~PyHidtLlqls~v~~~~gd~~~A~~lleRAL 67 (360)
T PF04910_consen 21 VQSHDPNALINLLQK-----NPYHIDTLLQLSEVYRQQGDHAQANDLLERAL 67 (360)
T ss_pred HHccCHHHHHHHHHH-----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344455555544421 23466677777778888888877777777663
No 476
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=51.91 E-value=51 Score=22.84 Aligned_cols=42 Identities=17% Similarity=0.095 Sum_probs=19.4
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccC
Q 016027 117 NGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLR 158 (396)
Q Consensus 117 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 158 (396)
..+...+..-.|.++++.+.+.+..++..|....++.+...|
T Consensus 8 ~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~G 49 (116)
T cd07153 8 EVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAG 49 (116)
T ss_pred HHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC
Confidence 333334444455555555555544444444444444444443
No 477
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=51.78 E-value=50 Score=22.73 Aligned_cols=26 Identities=12% Similarity=0.276 Sum_probs=12.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 016027 182 YNTVIDGLVEAGRFEEVSGMMERFLV 207 (396)
Q Consensus 182 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 207 (396)
|..++..|...|..++|++++.++..
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 34444444445555555555544443
No 478
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.71 E-value=77 Score=30.95 Aligned_cols=73 Identities=16% Similarity=0.111 Sum_probs=46.8
Q ss_pred hhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHH
Q 016027 5 LAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCK 84 (396)
Q Consensus 5 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 84 (396)
....|+++.|++...+ +. . ...|..|++....+|+.+-|.-.|++.... ..|--.|.-
T Consensus 653 aLe~gnle~ale~akk-ld---d-----~d~w~rLge~Al~qgn~~IaEm~yQ~~knf-------------ekLsfLYli 710 (1202)
T KOG0292|consen 653 ALECGNLEVALEAAKK-LD---D-----KDVWERLGEEALRQGNHQIAEMCYQRTKNF-------------EKLSFLYLI 710 (1202)
T ss_pred ehhcCCHHHHHHHHHh-cC---c-----HHHHHHHHHHHHHhcchHHHHHHHHHhhhh-------------hheeEEEEE
Confidence 4567888888765322 21 3 348888998888899988888888876553 334444555
Q ss_pred cCChHHHHHHHHHHh
Q 016027 85 QGRVKAASEYFHKRK 99 (396)
Q Consensus 85 ~~~~~~A~~~~~~~~ 99 (396)
.|+.++-.++...+.
T Consensus 711 Tgn~eKL~Km~~iae 725 (1202)
T KOG0292|consen 711 TGNLEKLSKMMKIAE 725 (1202)
T ss_pred eCCHHHHHHHHHHHH
Confidence 566555555554443
No 479
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=51.67 E-value=1e+02 Score=23.31 Aligned_cols=36 Identities=19% Similarity=0.191 Sum_probs=15.6
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 016027 158 RRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAG 193 (396)
Q Consensus 158 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 193 (396)
++.-.|.++++.+.+.+..++..|...-+..+...|
T Consensus 39 ~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 39 PGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred CCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 333444455555544444444444333344444433
No 480
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=51.08 E-value=56 Score=20.02 Aligned_cols=31 Identities=16% Similarity=0.218 Sum_probs=14.4
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 016027 319 LDTSTMLIHLLCRMYKFDEASAEFEDMIRRG 349 (396)
Q Consensus 319 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 349 (396)
...++.++...++..-.++++..+.++.+.|
T Consensus 8 ~~l~~Ql~el~Aed~AieDtiy~L~~al~~g 38 (65)
T PF09454_consen 8 DPLSNQLYELVAEDHAIEDTIYYLDRALQRG 38 (65)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3344444444444444444444444444444
No 481
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=51.04 E-value=79 Score=21.77 Aligned_cols=28 Identities=11% Similarity=0.010 Sum_probs=22.6
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 016027 320 DTSTMLIHLLCRMYKFDEASAEFEDMIR 347 (396)
Q Consensus 320 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 347 (396)
.-|..|+..|...|..++|++++.+..+
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 4577888888888888888888888766
No 482
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=50.69 E-value=2.5e+02 Score=27.45 Aligned_cols=128 Identities=11% Similarity=0.114 Sum_probs=67.2
Q ss_pred ChhhhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHH---HHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHH
Q 016027 1 MIKVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIR---RYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEI 77 (396)
Q Consensus 1 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~---~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (396)
||..+.+.|++++-...-..+.+. .|. ++..|..-+. .....+...++..+|+++... ..++.+|.-
T Consensus 119 Li~llrk~~dl~kl~~ar~~~~~~--~pl--~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~d------y~~v~iw~e 188 (881)
T KOG0128|consen 119 LIGLLRKLGDLEKLRQARLEMSEI--APL--PPHLWLEWLKDELSMTQSEERKEVEELFEKALGD------YNSVPIWEE 188 (881)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHh--cCC--ChHHHHHHHHHHHhhccCcchhHHHHHHHHHhcc------cccchHHHH
Confidence 355667788877765544444432 222 2345554443 334457788888888888775 333444444
Q ss_pred HHHHHH-------HcCChHHHHHHHHHHhhccCCCC--CChHHHHH---HHHHHHhcCChhHHHHHHHHHHhCC
Q 016027 78 LLDSLC-------KQGRVKAASEYFHKRKELDQSWA--PTVRVYNI---LLNGWFRSKNVKDAERFWLEMRKEN 139 (396)
Q Consensus 78 l~~~~~-------~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~~~---l~~~~~~~~~~~~a~~~~~~~~~~~ 139 (396)
.+.... +.++++.-..+|+++...- +.. .-...|.. +=..|..+-..++...+|..-+..+
T Consensus 189 ~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~-g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~ 261 (881)
T KOG0128|consen 189 VVNYLVGFGNVAKKSEDYKKERSVFERALRSL-GSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQP 261 (881)
T ss_pred HHHHHHhccccccccccchhhhHHHHHHHhhh-hhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcc
Confidence 444333 3356677777777766531 111 11222222 2233344444466666666655543
No 483
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=50.48 E-value=1.1e+02 Score=27.06 Aligned_cols=179 Identities=15% Similarity=0.053 Sum_probs=0.0
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHH
Q 016027 146 TYGTLVEGYCRLRRVDRAIRLVKEMRKE--GIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKG 223 (396)
Q Consensus 146 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 223 (396)
+...|++...-.|++....+.++.+.+. |..|...+---+.-+|.-.|++.+|.+.|-.++-. ++.+...+...--.
T Consensus 237 sL~GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VTY~VGFayLmmrryadai~~F~niLly-Iqrtks~~~~~~y~ 315 (525)
T KOG3677|consen 237 SLLGLLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVTYQVGFAYLMMRRYADAIRVFLNILLY-IQRTKSMFSRTTYQ 315 (525)
T ss_pred HHHHHHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEeeehhHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhcchhhh
Q ss_pred HHhcCC-hHHHHHHHHHHHHCCCCCChhhHHHHHHHHh-------ccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 016027 224 YCKAGD-LEGASKILKMMISRGFLPSPTTYNYFFRYFS-------KFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILC 295 (396)
Q Consensus 224 ~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 295 (396)
|...++ .+.-..++.-....-+.--..++...+.-++ ..|+.+.-..+|--....-..|....|..+..-|.
T Consensus 316 ~d~inKq~eqm~~llai~l~~yPq~iDESi~s~l~Ek~~d~ml~mqng~~q~~ks~f~y~cpkflsp~~~~~dgv~~~y~ 395 (525)
T KOG3677|consen 316 YDMINKQNEQMHHLLAICLSMYPQMIDESIHSQLAEKYGDKMLPMQNGDPQVFKSLFSYLCPKFLSPVVPNYDGVLPNYH 395 (525)
T ss_pred HhhhhhhHHHHHHHHHHHHHhCchhhhHHHHHHHHHHhcchhhhhhcCChHHHHHHHHHcCccccCCCCccccccccccc
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 016027 296 KEDKLDLAIQVSKEMKCRGCDIDLDTSTML 325 (396)
Q Consensus 296 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 325 (396)
+.--.......+..+....--|....|..+
T Consensus 396 kePl~~qlq~fld~v~qq~dl~~~rsylkl 425 (525)
T KOG3677|consen 396 KEPLLQQLQVFLDEVSQQADLPTIRSYLKL 425 (525)
T ss_pred ccHHHHHHHHHhHHHhhhccchHHHHHHHH
No 484
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=50.36 E-value=99 Score=22.70 Aligned_cols=78 Identities=10% Similarity=0.207 Sum_probs=33.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCC-----CCchhhHHHHHHHHHhcCC-hHHHHHHHHHHHHCCCCCChhhHHHHH
Q 016027 183 NTVIDGLVEAGRFEEVSGMMERFLVCEP-----GPTMVTYTSLVKGYCKAGD-LEGASKILKMMISRGFLPSPTTYNYFF 256 (396)
Q Consensus 183 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~ 256 (396)
+.++.-....+++...+++++.+.-... ..+...|..++.+.++..- .-.+..+|..+.+.+..+++.-|..++
T Consensus 43 N~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li 122 (145)
T PF13762_consen 43 NCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLI 122 (145)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 4444444455555555555555422110 1223344444444433333 223344444444444444444555555
Q ss_pred HHHh
Q 016027 257 RYFS 260 (396)
Q Consensus 257 ~~~~ 260 (396)
.++.
T Consensus 123 ~~~l 126 (145)
T PF13762_consen 123 KAAL 126 (145)
T ss_pred HHHH
Confidence 4443
No 485
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=49.33 E-value=46 Score=23.32 Aligned_cols=46 Identities=15% Similarity=0.036 Sum_probs=24.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccC
Q 016027 113 NILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLR 158 (396)
Q Consensus 113 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 158 (396)
..++..+...+..-.|.++++.+.+.+...+..|.-.-+..+.+.|
T Consensus 11 ~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 11 LAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 3445555555556666666666666655555555444444444444
No 486
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=49.07 E-value=1.7e+02 Score=24.99 Aligned_cols=112 Identities=13% Similarity=0.105 Sum_probs=64.2
Q ss_pred cCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 016027 122 SKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGM 201 (396)
Q Consensus 122 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 201 (396)
..-..+|.++|+...+.| ..+|+. -+.+...|. ..+.+.+++...-...-..+..+..+.|+..+|.+.
T Consensus 229 a~Ti~~AE~l~k~ALka~----e~~yr~-sqq~qh~~~------~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~ 297 (556)
T KOG3807|consen 229 ATTIVDAERLFKQALKAG----ETIYRQ-SQQCQHQSP------QHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKI 297 (556)
T ss_pred hhhHHHHHHHHHHHHHHH----HHHHhh-HHHHhhhcc------chhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHH
Confidence 445677888888877653 223321 111112222 223334443222223334566667789999999999
Q ss_pred HHHHHhcCCCCc-hhhHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 016027 202 MERFLVCEPGPT-MVTYTSLVKGYCKAGDLEGASKILKMMISRG 244 (396)
Q Consensus 202 ~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 244 (396)
++.+.+..+-.+ ......++.++....-+.++..++.+..+..
T Consensus 298 ~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdis 341 (556)
T KOG3807|consen 298 MRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDIS 341 (556)
T ss_pred HHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 999877533111 1234567888888777777777776666543
No 487
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=48.96 E-value=1.9e+02 Score=25.59 Aligned_cols=122 Identities=17% Similarity=0.119 Sum_probs=62.4
Q ss_pred ChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHH
Q 016027 143 NVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNA-IVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLV 221 (396)
Q Consensus 143 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 221 (396)
+..+...++.. ..||...++..++.+.... +++. .+ .+...+++.+-... ...+...+..++
T Consensus 191 ~~~a~~~l~~~--s~GD~R~aLN~LE~~~~~~-~~~~~~~-------------~~~l~~~l~~~~~~-~Dk~gD~hYdli 253 (436)
T COG2256 191 DEEALDYLVRL--SNGDARRALNLLELAALSA-EPDEVLI-------------LELLEEILQRRSAR-FDKDGDAHYDLI 253 (436)
T ss_pred CHHHHHHHHHh--cCchHHHHHHHHHHHHHhc-CCCcccC-------------HHHHHHHHhhhhhc-cCCCcchHHHHH
Confidence 44455555443 4577777777777766542 2222 01 12222222222211 123434444455
Q ss_pred HHHHh---cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCH-----HHHHHHHHHHHHCCCC
Q 016027 222 KGYCK---AGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKV-----EDAMNLYRKMIESGYT 281 (396)
Q Consensus 222 ~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~a~~~~~~~~~~~~~ 281 (396)
+++-+ -.+++.|+-.+.+|.+.|-.|-...-..++.++...|.- .-|...++.....|.+
T Consensus 254 SA~hKSvRGSD~dAALyylARmi~~GeDp~yiARRlv~~AsEDIGlAdP~Al~~a~aa~da~~~lG~P 321 (436)
T COG2256 254 SALHKSVRGSDPDAALYYLARMIEAGEDPLYIARRLVRIASEDIGLADPNALQVAVAALDAVERLGSP 321 (436)
T ss_pred HHHHHhhccCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCCChhHHHHHHHHHHHHHHhCCc
Confidence 55544 356777777777777777655555555555555555532 2344444445555543
No 488
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=48.28 E-value=1.2e+02 Score=23.00 Aligned_cols=62 Identities=6% Similarity=-0.052 Sum_probs=37.8
Q ss_pred HHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhH
Q 016027 275 MIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDE 337 (396)
Q Consensus 275 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 337 (396)
+...|+.++..=. .++..+...++.-.|.++++.+.+.++.++..|...-+..+...|-..+
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~~ 78 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHK 78 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEEE
Confidence 3445665544333 3444444455566778888888777766666666666667777775543
No 489
>KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]
Probab=47.58 E-value=2.9e+02 Score=27.20 Aligned_cols=25 Identities=12% Similarity=0.017 Sum_probs=20.3
Q ss_pred HHcCCchHHHHHHHHHhccchhhhh
Q 016027 365 KKRGMTALAQKLCNVMSSVPRSMEL 389 (396)
Q Consensus 365 ~~~g~~~~A~~~~~~~~~~~~~~~~ 389 (396)
.+.|++++|..+++.+.-.|..+..
T Consensus 718 y~~~~~e~aL~~le~l~LiP~~~~~ 742 (835)
T KOG2168|consen 718 YHNGEWEEALSILEHLDLIPLDPLS 742 (835)
T ss_pred HhhhHHHHHHHHHHHHhccCCChhh
Confidence 5789999999999998887765543
No 490
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=47.01 E-value=1.5e+02 Score=23.94 Aligned_cols=34 Identities=24% Similarity=0.314 Sum_probs=16.0
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 016027 282 PDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCD 316 (396)
Q Consensus 282 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 316 (396)
|.+.....++..|.. +++++|.+.+.++-+.|+.
T Consensus 237 PhP~~v~~ml~~~~~-~~~~~A~~il~~lw~lgys 270 (333)
T KOG0991|consen 237 PHPLLVKKMLQACLK-RNIDEALKILAELWKLGYS 270 (333)
T ss_pred CChHHHHHHHHHHHh-ccHHHHHHHHHHHHHcCCC
Confidence 344444444443332 4455555555555555544
No 491
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=46.52 E-value=1.9e+02 Score=24.89 Aligned_cols=135 Identities=11% Similarity=0.042 Sum_probs=0.0
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 016027 255 FFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYK 334 (396)
Q Consensus 255 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 334 (396)
+.+.+++.++.+.+..+-+.+... .......+..++....-.+...+.+.+..+.. ||......+++++.....
T Consensus 172 IAD~~aRl~~~~~~~~l~~al~~l----P~~vl~aL~~~LEh~~l~~~l~~~l~~~~~~~--~d~~~~~a~lRAls~~~~ 245 (340)
T PF12069_consen 172 IADICARLDQEDNAQLLRKALPHL----PPEVLYALCGCLEHQPLPDKLAEALLERLEQA--PDLELLSALLRALSSAPA 245 (340)
T ss_pred HHHHHHHhcccchHHHHHHHHhhC----ChHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHcCCCc
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-cCCchHHHHHHHHHhccchhhhhhhhhcCC
Q 016027 335 FDEASAEFEDMIRRGLVPHYLTFKRLNDEFKK-RGMTALAQKLCNVMSSVPRSMELLDSRCKD 396 (396)
Q Consensus 335 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 396 (396)
.......++.+++.....+...+..+..-|.. ..+.+....+++++-..+. ....+....|
T Consensus 246 ~~~~~~~i~~~L~~~~~~~~e~Li~IAgR~W~~L~d~~~l~~fle~LA~~~~-~~lF~qlfaD 307 (340)
T PF12069_consen 246 SDLVAILIDALLQSPRLCHPEVLIAIAGRCWQWLKDPQLLRLFLERLAQQDD-QALFNQLFAD 307 (340)
T ss_pred hhHHHHHHHHHhcCcccCChHHHHHHHhcCchhcCCHHHHHHHHHHHHcccH-HHHHHHHHHH
No 492
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=46.16 E-value=1.2e+02 Score=22.34 Aligned_cols=81 Identities=7% Similarity=0.032 Sum_probs=42.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----CCChhhHHHHHHHHHhcCC-hhHHHHHHHHHHHCCCCCCHHHHHHH
Q 016027 287 YHILLKILCKEDKLDLAIQVSKEMKCRGC-----DIDLDTSTMLIHLLCRMYK-FDEASAEFEDMIRRGLVPHYLTFKRL 360 (396)
Q Consensus 287 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~p~~~~~~~l 360 (396)
.+.++......++......+++.+..... ..+...|..++.+..+..- ---+..+|.-+.+.+.++++.-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 34444444444555555555444432110 1245566666666654444 33455566666655666677777777
Q ss_pred HHHHHHc
Q 016027 361 NDEFKKR 367 (396)
Q Consensus 361 ~~~~~~~ 367 (396)
+.++.+.
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 7766554
No 493
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=46.11 E-value=2e+02 Score=24.87 Aligned_cols=64 Identities=16% Similarity=0.171 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHH
Q 016027 160 VDRAIRLVKEMRKEGIEPNA----IVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYC 225 (396)
Q Consensus 160 ~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 225 (396)
.+++..+++.+++. .|+. ..|..++......|.++.++.+|++++..|..|-...-..++..+.
T Consensus 119 ~eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 119 KEEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 45677777777765 4554 3566777888889999999999999999999888777777777655
No 494
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=46.01 E-value=83 Score=20.57 Aligned_cols=41 Identities=15% Similarity=0.203 Sum_probs=18.9
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 016027 165 RLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERF 205 (396)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 205 (396)
++|+-....|+..|+.+|..++..+.-.=..+...++++.+
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m 69 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSM 69 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 34444444455555555555444444333444444444444
No 495
>PRK12798 chemotaxis protein; Reviewed
Probab=45.88 E-value=2.2e+02 Score=25.34 Aligned_cols=227 Identities=12% Similarity=0.096 Sum_probs=125.6
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCChh-HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHcCCHH
Q 016027 119 WFRSKNVKDAERFWLEMRKENVTPNVV-TYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGL-VEAGRFE 196 (396)
Q Consensus 119 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~ 196 (396)
...-|++.-...++. .+..++.. ....-+..| -.|+..++.+.+..+.....++....+-.|+.+- ....+..
T Consensus 91 ~lSGGnP~vlr~L~~----~d~~~~~d~~L~~g~laY-~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~ 165 (421)
T PRK12798 91 LLSGGNPATLRKLLA----RDKLGNFDQRLADGALAY-LSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPA 165 (421)
T ss_pred HhcCCCHHHHHHHHH----cCCCChhhHHHHHHHHHH-HcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHH
Confidence 344566665544443 33332322 222223333 3688889999888887776677777777777554 4456788
Q ss_pred HHHHHHHHHHhcCCC--CchhhHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCChhhH-HHHHHHHhccCCHHHHHHHH
Q 016027 197 EVSGMMERFLVCEPG--PTMVTYTSLVKGYCKAGDLEGASKILKMMISR-GFLPSPTTY-NYFFRYFSKFGKVEDAMNLY 272 (396)
Q Consensus 197 ~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~ 272 (396)
.|+.+|+...-.-+. .......--+....+.|+.+++..+-.+...+ ...|-..-| ..+.....+.++-..-.. +
T Consensus 166 ~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~-l 244 (421)
T PRK12798 166 TALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDAR-L 244 (421)
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHH-H
Confidence 999999887653221 12233344455667888888887776666554 122222222 223333344333222222 3
Q ss_pred HHHHHC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH-----HhcCChhHHHHHHHHHH
Q 016027 273 RKMIES-GYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLL-----CRMYKFDEASAEFEDMI 346 (396)
Q Consensus 273 ~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~a~~~~~~~~ 346 (396)
..+... ...--...|..+.+.-.-.|+.+-|.-.-++....... ...-...+..| .-..+++++.+.+..+-
T Consensus 245 ~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~~--~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~ 322 (421)
T PRK12798 245 VEILSFMDPERQRELYLRIARAALIDGKTELARFASERALKLADP--DSADAARARLYRGAALVASDDAESALEELSQID 322 (421)
T ss_pred HHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhccC--CCcchHHHHHHHHHHccCcccHHHHHHHHhcCC
Confidence 333322 21223457888888888889999888888887765322 11112222222 23455777777777666
Q ss_pred HCCCCCC
Q 016027 347 RRGLVPH 353 (396)
Q Consensus 347 ~~~~~p~ 353 (396)
...+.|.
T Consensus 323 ~~~L~~~ 329 (421)
T PRK12798 323 RDKLSER 329 (421)
T ss_pred hhhCChh
Confidence 5555444
No 496
>PRK09462 fur ferric uptake regulator; Provisional
Probab=45.68 E-value=1.2e+02 Score=22.28 Aligned_cols=60 Identities=15% Similarity=0.093 Sum_probs=32.6
Q ss_pred HHHCCCCCChhhHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh
Q 016027 275 MIESGYTPDRLTYHILLKILCKE-DKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKF 335 (396)
Q Consensus 275 ~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 335 (396)
+.+.|..++..= ..++..+... +..-.|.++++.+.+.++..+..|.-.-+..+...|-.
T Consensus 8 l~~~glr~T~qR-~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 8 LKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 344455544332 2233444433 34566777777777666655665555556666666644
No 497
>PRK09462 fur ferric uptake regulator; Provisional
Probab=45.59 E-value=1.2e+02 Score=22.28 Aligned_cols=35 Identities=23% Similarity=0.184 Sum_probs=16.5
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 016027 159 RVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAG 193 (396)
Q Consensus 159 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 193 (396)
..-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 32 ~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~G 66 (148)
T PRK09462 32 HHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (148)
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 34455555555555544444444444444444444
No 498
>PRK13342 recombination factor protein RarA; Reviewed
Probab=45.17 E-value=2.3e+02 Score=25.38 Aligned_cols=55 Identities=16% Similarity=0.097 Sum_probs=32.0
Q ss_pred cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCC-----HHHHHHHHHHHHHCCCC
Q 016027 227 AGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGK-----VEDAMNLYRKMIESGYT 281 (396)
Q Consensus 227 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~ 281 (396)
.++.+.|...+..|.+.|..|....-..+..++...|. ..-|...++-....|.+
T Consensus 243 gsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~~~~~~~~g~p 302 (413)
T PRK13342 243 GSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAADAVERIGMP 302 (413)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHhCCc
Confidence 46788888888888887766665555555555444432 22344445555555644
No 499
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.52 E-value=97 Score=20.92 Aligned_cols=43 Identities=7% Similarity=-0.079 Sum_probs=19.9
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 016027 165 RLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLV 207 (396)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 207 (396)
+.+++....+....+-....+.-.|.+.|+.+.|.+-|+.-..
T Consensus 58 ~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKa 100 (121)
T COG4259 58 KYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKA 100 (121)
T ss_pred HHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhh
Confidence 3344444333222223333444445666666666665555433
No 500
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.51 E-value=3.3e+02 Score=26.99 Aligned_cols=294 Identities=15% Similarity=0.115 Sum_probs=0.0
Q ss_pred hhhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHH
Q 016027 3 KVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSL 82 (396)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 82 (396)
+.|...|+|+.|++..... |+.. ...+..-+..+.+.+++..|-++|.+..+. |..+.--+
T Consensus 366 k~yLd~g~y~kAL~~ar~~------p~~l-e~Vl~~qAdf~f~~k~y~~AA~~yA~t~~~------------FEEVaLKF 426 (911)
T KOG2034|consen 366 KTYLDKGEFDKALEIARTR------PDAL-ETVLLKQADFLFQDKEYLRAAEIYAETLSS------------FEEVALKF 426 (911)
T ss_pred HHHHhcchHHHHHHhccCC------HHHH-HHHHHHHHHHHHhhhHHHHHHHHHHHhhhh------------HHHHHHHH
Q ss_pred HHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHH
Q 016027 83 CKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDR 162 (396)
Q Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 162 (396)
....+.+.-..++.+=.. ..+|...+-..++..+.-.-..++--++- .+|.......-..+ +.
T Consensus 427 l~~~~~~~L~~~L~KKL~---~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~--------~~de~~~en~~~~~------~~ 489 (911)
T KOG2034|consen 427 LEINQERALRTFLDKKLD---RLTPEDKTQRDALVTWLLELYLEQLNDLD--------STDEEALENWRLEY------DE 489 (911)
T ss_pred HhcCCHHHHHHHHHHHHh---hCChHHHHHHHHHHHHHHHHHHHHHhccc--------ccChhHHHHHHHHH------HH
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 016027 163 AIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMIS 242 (396)
Q Consensus 163 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 242 (396)
..+-+...... ..+.....+....+...|+.+....+-.-+.. |..++..+.+.+.+++|.+++..-..
T Consensus 490 ~~re~~~~~~~--~~~~~nretv~~l~~~~~~~e~ll~fA~l~~d---------~~~vv~~~~q~e~yeeaLevL~~~~~ 558 (911)
T KOG2034|consen 490 VQREFSKFLVL--HKDELNRETVYQLLASHGRQEELLQFANLIKD---------YEFVVSYWIQQENYEEALEVLLNQRN 558 (911)
T ss_pred HHHHHHHHHHh--hHHhhhHHHHHHHHHHccCHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHhccc
Q ss_pred -------------------------CCCCCChhhHHHHHHHHhcc---CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 016027 243 -------------------------RGFLPSPTTYNYFFRYFSKF---GKVEDAMNLYRKMIESGYTPDRLTYHILLKIL 294 (396)
Q Consensus 243 -------------------------~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 294 (396)
.+-..+......++..+.+. .....+..+++-....-..-++..++.++..|
T Consensus 559 ~el~yk~ap~Li~~~p~~tV~~wm~~~d~~~~~li~~~L~~~~~~~~~~~~~~~i~yl~f~~~~l~~~~~~ihn~ll~ly 638 (911)
T KOG2034|consen 559 PELFYKYAPELITHSPKETVSAWMAQKDLDPNRLIPPILSYFSNWHSEYEENQAIRYLEFCIEVLGMTNPAIHNSLLHLY 638 (911)
T ss_pred hhhHHHhhhHHHhcCcHHHHHHHHHccccCchhhhHHHHHHHhcCCccccHHHHHHHHHHHHHhccCcCHHHHHHHHHHh
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 016027 295 CKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDM 345 (396)
Q Consensus 295 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 345 (396)
++..+-+.-..+-......+- ...-....++.|.+.+....+..++..|
T Consensus 639 a~~~~~~ll~~le~~~~~~~~--~~YDl~~alRlc~~~~~~ra~V~l~~~l 687 (911)
T KOG2034|consen 639 AKHERDDLLLYLEIIKFMKSR--VHYDLDYALRLCLKFKKTRACVFLLCML 687 (911)
T ss_pred hcCCccchHHHHHHHhhcccc--ceecHHHHHHHHHHhCccceeeeHHHHH
Done!