Query 016027
Match_columns 396
No_of_seqs 662 out of 1740
Neff 12.1
Searched_HMMs 29240
Date Mon Mar 25 06:38:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016027.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016027hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1.9E-36 6.6E-41 278.1 40.6 273 108-386 304-582 (597)
2 2xpi_A Anaphase-promoting comp 100.0 4.7E-36 1.6E-40 275.6 42.3 369 2-385 124-547 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 7.6E-34 2.6E-38 246.8 44.4 366 2-386 6-371 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 4.4E-31 1.5E-35 229.4 42.2 348 3-369 41-388 (388)
5 4g26_A Pentatricopeptide repea 100.0 5.8E-32 2E-36 238.7 24.2 186 111-296 28-222 (501)
6 4g26_A Pentatricopeptide repea 100.0 1.1E-31 3.7E-36 237.0 24.9 207 126-332 7-223 (501)
7 2gw1_A Mitochondrial precursor 100.0 1.3E-28 4.6E-33 221.9 36.4 369 3-387 14-482 (514)
8 2y4t_A DNAJ homolog subfamily 100.0 3.7E-27 1.3E-31 208.9 39.1 348 13-379 10-405 (450)
9 2y4t_A DNAJ homolog subfamily 100.0 4.2E-27 1.4E-31 208.5 38.8 355 2-374 33-445 (450)
10 3fp2_A TPR repeat-containing p 100.0 2.5E-26 8.4E-31 208.3 37.0 367 3-386 33-494 (537)
11 2gw1_A Mitochondrial precursor 100.0 7.8E-26 2.7E-30 203.8 35.1 340 33-386 6-447 (514)
12 3ieg_A DNAJ homolog subfamily 100.0 1.7E-24 5.7E-29 185.8 39.7 319 33-365 3-351 (359)
13 3ieg_A DNAJ homolog subfamily 99.9 2.4E-23 8.3E-28 178.5 38.7 306 71-386 2-338 (359)
14 3fp2_A TPR repeat-containing p 99.9 2.8E-24 9.5E-29 194.8 33.0 339 33-386 25-460 (537)
15 3hym_B Cell division cycle pro 99.9 4.1E-23 1.4E-27 175.0 34.0 284 33-329 22-314 (330)
16 3hym_B Cell division cycle pro 99.9 1.2E-22 4E-27 172.2 32.8 295 68-371 18-322 (330)
17 1fch_A Peroxisomal targeting s 99.9 3.1E-23 1.1E-27 178.6 27.6 296 43-346 35-357 (368)
18 2xm6_A Protein corresponding t 99.9 2.5E-20 8.4E-25 166.6 46.4 338 8-384 56-433 (490)
19 1fch_A Peroxisomal targeting s 99.9 1.3E-22 4.4E-27 174.8 27.6 315 45-379 13-355 (368)
20 4eqf_A PEX5-related protein; a 99.9 4.1E-22 1.4E-26 171.4 26.3 232 34-277 66-309 (365)
21 4g1t_A Interferon-induced prot 99.9 1E-20 3.4E-25 168.6 33.1 365 3-388 59-464 (472)
22 2ooe_A Cleavage stimulation fa 99.9 2.2E-19 7.4E-24 162.1 41.0 366 5-384 22-493 (530)
23 4eqf_A PEX5-related protein; a 99.9 4.5E-22 1.6E-26 171.2 22.4 234 71-312 64-309 (365)
24 3cv0_A Peroxisome targeting si 99.9 2.8E-21 9.6E-26 163.5 26.6 264 33-308 21-310 (327)
25 2xm6_A Protein corresponding t 99.9 1.8E-18 6.2E-23 154.5 45.8 319 33-384 39-397 (490)
26 3cv0_A Peroxisome targeting si 99.9 2.8E-20 9.6E-25 157.3 26.2 282 71-382 20-314 (327)
27 2ooe_A Cleavage stimulation fa 99.9 3.1E-18 1.1E-22 154.5 37.0 340 27-383 9-454 (530)
28 3mkr_A Coatomer subunit epsilo 99.9 4.8E-19 1.6E-23 146.4 28.8 254 41-313 7-264 (291)
29 3mkr_A Coatomer subunit epsilo 99.9 5.4E-19 1.9E-23 146.1 26.1 278 79-377 6-288 (291)
30 1b89_A Protein (clathrin heavy 99.8 4.9E-20 1.7E-24 155.7 17.8 284 6-341 14-304 (449)
31 2pl2_A Hypothetical conserved 99.8 5.6E-19 1.9E-23 139.7 22.2 197 33-241 5-212 (217)
32 1xnf_A Lipoprotein NLPI; TPR, 99.8 3.3E-19 1.1E-23 146.9 19.1 253 4-272 14-269 (275)
33 3uq3_A Heat shock protein STI1 99.8 6E-18 2.1E-22 137.8 26.0 228 33-278 5-236 (258)
34 1b89_A Protein (clathrin heavy 99.8 8.9E-20 3E-24 154.1 15.1 285 44-377 14-305 (449)
35 2pl2_A Hypothetical conserved 99.8 3E-18 1E-22 135.5 23.0 200 69-276 2-212 (217)
36 4g1t_A Interferon-induced prot 99.8 2.9E-16 1E-20 139.8 37.5 311 33-348 51-401 (472)
37 3u4t_A TPR repeat-containing p 99.8 1.1E-17 3.7E-22 137.5 25.8 239 33-279 3-251 (272)
38 2h6f_A Protein farnesyltransfe 99.8 1.4E-17 4.8E-22 142.2 26.7 248 33-294 97-363 (382)
39 3e4b_A ALGK; tetratricopeptide 99.8 4.2E-18 1.4E-22 149.9 23.3 346 2-385 10-389 (452)
40 3uq3_A Heat shock protein STI1 99.8 2.2E-17 7.4E-22 134.5 24.6 225 109-347 5-235 (258)
41 1xi4_A Clathrin heavy chain; a 99.8 9.2E-16 3.1E-20 144.8 37.8 317 3-383 993-1309(1630)
42 2h6f_A Protein farnesyltransfe 99.8 3.1E-17 1E-21 140.1 25.3 251 69-329 94-363 (382)
43 1xi4_A Clathrin heavy chain; a 99.8 8.9E-16 3.1E-20 144.9 36.6 314 2-375 1056-1376(1630)
44 3u4t_A TPR repeat-containing p 99.8 4.7E-17 1.6E-21 133.7 25.0 236 73-314 4-251 (272)
45 2ho1_A Type 4 fimbrial biogene 99.8 1.7E-16 5.9E-21 128.8 27.0 201 33-243 37-238 (252)
46 3e4b_A ALGK; tetratricopeptide 99.8 8.2E-17 2.8E-21 141.7 26.6 345 3-383 43-421 (452)
47 2vq2_A PILW, putative fimbrial 99.8 4.4E-16 1.5E-20 123.9 27.9 202 33-243 8-211 (225)
48 1ouv_A Conserved hypothetical 99.8 1.4E-15 4.7E-20 125.0 31.3 223 33-279 6-252 (273)
49 2q7f_A YRRB protein; TPR, prot 99.8 3.1E-17 1.1E-21 132.4 20.8 201 33-244 23-223 (243)
50 1ouv_A Conserved hypothetical 99.8 1.8E-15 6E-20 124.4 31.5 225 69-313 3-251 (273)
51 1xnf_A Lipoprotein NLPI; TPR, 99.8 1.6E-17 5.4E-22 136.8 19.1 252 43-307 15-269 (275)
52 2q7f_A YRRB protein; TPR, prot 99.8 8.3E-17 2.8E-21 129.8 21.1 203 3-220 31-233 (243)
53 2vq2_A PILW, putative fimbrial 99.8 1.3E-15 4.4E-20 121.2 26.7 205 69-278 5-211 (225)
54 2ho1_A Type 4 fimbrial biogene 99.8 1.1E-15 3.9E-20 123.9 26.6 201 72-278 37-238 (252)
55 3sf4_A G-protein-signaling mod 99.8 7.1E-17 2.4E-21 140.7 20.5 298 33-335 9-363 (406)
56 3spa_A Mtrpol, DNA-directed RN 99.8 3.4E-18 1.2E-22 156.2 12.0 150 109-263 127-286 (1134)
57 3spa_A Mtrpol, DNA-directed RN 99.8 6E-19 2.1E-23 161.1 6.7 118 214-331 127-248 (1134)
58 4a1s_A PINS, partner of inscut 99.7 1.3E-16 4.4E-21 139.4 19.7 239 33-276 48-330 (411)
59 3sf4_A G-protein-signaling mod 99.7 1.2E-16 4.1E-21 139.2 19.5 303 69-371 6-364 (406)
60 3vtx_A MAMA; tetratricopeptide 99.7 1.6E-15 5.6E-20 116.6 22.9 166 33-208 5-170 (184)
61 4a1s_A PINS, partner of inscut 99.7 5.1E-17 1.7E-21 141.9 15.8 274 3-278 56-372 (411)
62 2ond_A Cleavage stimulation fa 99.7 1.2E-14 4E-19 121.6 28.7 233 34-278 9-270 (308)
63 3ro2_A PINS homolog, G-protein 99.7 4E-16 1.4E-20 132.1 19.7 204 33-241 5-250 (338)
64 2ond_A Cleavage stimulation fa 99.7 6.3E-15 2.2E-19 123.2 26.2 219 12-244 33-271 (308)
65 3ro2_A PINS homolog, G-protein 99.7 1.3E-16 4.5E-21 135.1 16.1 274 3-278 13-332 (338)
66 3vtx_A MAMA; tetratricopeptide 99.7 6.3E-15 2.2E-19 113.3 22.6 169 69-243 2-170 (184)
67 3ulq_A Response regulator aspa 99.7 3.5E-15 1.2E-19 129.0 23.5 298 5-312 22-367 (383)
68 4abn_A Tetratricopeptide repea 99.7 8.9E-16 3.1E-20 136.0 19.6 215 48-274 83-317 (474)
69 3ulq_A Response regulator aspa 99.7 5.1E-15 1.8E-19 127.9 23.0 231 150-383 109-368 (383)
70 4abn_A Tetratricopeptide repea 99.7 2E-15 6.7E-20 133.8 19.8 218 86-311 82-319 (474)
71 3nf1_A KLC 1, kinesin light ch 99.7 1.2E-15 4E-20 127.9 15.1 176 32-207 26-223 (311)
72 4e6h_A MRNA 3'-END-processing 99.7 1.5E-12 5.2E-17 118.6 35.0 203 181-385 345-572 (679)
73 4gyw_A UDP-N-acetylglucosamine 99.7 1E-14 3.5E-19 134.2 20.2 166 32-207 8-173 (723)
74 4e6h_A MRNA 3'-END-processing 99.6 7.3E-12 2.5E-16 114.1 37.4 362 11-385 48-535 (679)
75 3q15_A PSP28, response regulat 99.6 1.5E-13 5.2E-18 118.4 24.2 311 70-384 8-366 (378)
76 4gyw_A UDP-N-acetylglucosamine 99.6 5E-14 1.7E-18 129.7 21.7 169 68-242 5-173 (723)
77 3as5_A MAMA; tetratricopeptide 99.6 1.2E-13 3.9E-18 106.2 20.3 166 33-208 8-173 (186)
78 3nf1_A KLC 1, kinesin light ch 99.6 4.3E-15 1.5E-19 124.4 13.1 247 108-383 26-307 (311)
79 3q15_A PSP28, response regulat 99.6 2.6E-13 8.8E-18 117.0 24.5 310 35-347 12-364 (378)
80 1hz4_A MALT regulatory protein 99.6 4.6E-13 1.6E-17 115.2 26.0 274 34-312 15-321 (373)
81 4i17_A Hypothetical protein; T 99.6 3.3E-13 1.1E-17 107.5 21.3 206 33-257 7-222 (228)
82 1hz4_A MALT regulatory protein 99.6 1.5E-12 5.1E-17 112.0 27.0 307 72-386 14-352 (373)
83 3as5_A MAMA; tetratricopeptide 99.6 1E-12 3.6E-17 100.8 20.6 166 72-243 8-173 (186)
84 3qky_A Outer membrane assembly 99.5 7.3E-13 2.5E-17 107.9 19.5 188 32-243 14-224 (261)
85 4i17_A Hypothetical protein; T 99.5 2.8E-12 9.6E-17 102.1 22.5 208 69-290 4-220 (228)
86 3edt_B KLC 2, kinesin light ch 99.5 4.2E-13 1.4E-17 110.5 16.3 236 5-243 11-281 (283)
87 3urz_A Uncharacterized protein 99.5 2E-12 6.7E-17 101.3 18.9 165 33-208 4-186 (208)
88 3edt_B KLC 2, kinesin light ch 99.5 2.9E-13 1E-17 111.5 14.5 235 43-278 11-281 (283)
89 4ga2_A E3 SUMO-protein ligase 99.5 3.1E-13 1.1E-17 99.8 13.1 144 3-159 5-149 (150)
90 2pzi_A Probable serine/threoni 99.5 8.7E-13 3E-17 122.1 16.0 133 69-207 430-562 (681)
91 1qqe_A Vesicular transport pro 99.5 4.5E-12 1.5E-16 104.9 18.8 197 81-277 46-268 (292)
92 3urz_A Uncharacterized protein 99.5 1.7E-12 5.9E-17 101.6 15.4 168 3-186 12-197 (208)
93 4ga2_A E3 SUMO-protein ligase 99.5 7.8E-13 2.7E-17 97.6 11.7 146 39-194 3-149 (150)
94 3qky_A Outer membrane assembly 99.5 1.2E-11 3.9E-16 100.8 19.6 216 69-303 12-251 (261)
95 2yhc_A BAMD, UPF0169 lipoprote 99.4 2.3E-11 8E-16 96.5 20.7 192 33-245 4-215 (225)
96 2pzi_A Probable serine/threoni 99.4 3E-12 1E-16 118.5 17.4 185 69-264 391-583 (681)
97 1qqe_A Vesicular transport pro 99.4 5E-12 1.7E-16 104.6 16.9 215 10-242 32-268 (292)
98 2r5s_A Uncharacterized protein 99.4 4E-12 1.4E-16 96.7 13.7 164 34-207 7-172 (176)
99 2fo7_A Synthetic consensus TPR 99.4 4E-11 1.4E-15 86.5 17.6 130 35-173 3-132 (136)
100 3dra_A Protein farnesyltransfe 99.4 9.5E-10 3.2E-14 90.2 27.1 228 39-277 38-286 (306)
101 2uy1_A Cleavage stimulation fa 99.4 2.4E-09 8.2E-14 94.8 31.4 347 9-382 28-412 (493)
102 3dra_A Protein farnesyltransfe 99.4 6.5E-10 2.2E-14 91.2 25.7 238 5-256 42-300 (306)
103 3mv2_B Coatomer subunit epsilo 99.4 1.3E-10 4.5E-15 94.3 20.9 244 79-348 20-282 (310)
104 3mv2_B Coatomer subunit epsilo 99.4 5.3E-10 1.8E-14 90.8 24.3 246 40-315 20-284 (310)
105 2r5s_A Uncharacterized protein 99.4 2.3E-11 7.9E-16 92.4 15.6 165 72-242 6-172 (176)
106 2yhc_A BAMD, UPF0169 lipoprote 99.4 1.3E-10 4.6E-15 92.1 20.6 190 71-279 3-214 (225)
107 2vsy_A XCC0866; transferase, g 99.4 2.1E-11 7.1E-16 111.0 18.0 154 8-174 2-158 (568)
108 3qou_A Protein YBBN; thioredox 99.4 3.7E-11 1.2E-15 99.1 17.2 163 33-205 117-281 (287)
109 2fo7_A Synthetic consensus TPR 99.4 1.1E-10 3.7E-15 84.2 17.6 130 74-208 3-132 (136)
110 3rjv_A Putative SEL1 repeat pr 99.3 2.9E-10 1E-14 89.1 20.0 177 13-210 4-199 (212)
111 2vsy_A XCC0866; transferase, g 99.3 1E-10 3.4E-15 106.5 19.1 156 46-211 2-160 (568)
112 3qou_A Protein YBBN; thioredox 99.3 1.7E-10 5.7E-15 95.1 18.0 165 69-239 114-280 (287)
113 3rjv_A Putative SEL1 repeat pr 99.3 5.9E-10 2E-14 87.4 20.1 176 51-244 4-198 (212)
114 2ifu_A Gamma-SNAP; membrane fu 99.3 1.4E-10 4.8E-15 96.7 15.8 165 7-172 3-183 (307)
115 4gco_A Protein STI-1; structur 99.3 3E-10 1E-14 80.8 15.2 111 33-152 13-123 (126)
116 3gyz_A Chaperone protein IPGC; 99.3 1.8E-11 6.2E-16 89.7 8.6 100 32-139 35-134 (151)
117 2ifu_A Gamma-SNAP; membrane fu 99.2 3E-10 1E-14 94.6 16.4 161 45-206 3-182 (307)
118 4gco_A Protein STI-1; structur 99.2 1.5E-10 5.1E-15 82.3 11.8 103 3-117 21-123 (126)
119 3q7a_A Farnesyltransferase alp 99.2 2E-08 6.8E-13 83.3 25.9 184 36-230 57-258 (349)
120 2c2l_A CHIP, carboxy terminus 99.2 1.4E-10 4.7E-15 95.3 12.0 195 33-243 4-199 (281)
121 1hh8_A P67PHOX, NCF-2, neutrop 99.2 1.2E-09 4E-14 85.8 16.7 124 4-139 15-151 (213)
122 1a17_A Serine/threonine protei 99.2 1.6E-09 5.4E-14 81.2 16.7 130 33-171 13-144 (166)
123 2e2e_A Formate-dependent nitri 99.2 4.5E-10 1.6E-14 85.3 13.4 124 4-139 19-145 (177)
124 2uy1_A Cleavage stimulation fa 99.2 1.5E-07 5.1E-12 83.4 31.3 310 11-347 64-412 (493)
125 2vgx_A Chaperone SYCD; alterna 99.2 3.8E-10 1.3E-14 82.8 12.3 111 16-138 8-118 (148)
126 4f3v_A ESX-1 secretion system 99.2 1.9E-10 6.5E-15 92.2 10.9 203 7-220 18-247 (282)
127 3gyz_A Chaperone protein IPGC; 99.2 1.5E-10 5.2E-15 84.8 9.5 102 69-174 33-134 (151)
128 3q7a_A Farnesyltransferase alp 99.2 3.3E-08 1.1E-12 82.0 24.2 172 121-297 66-255 (349)
129 1hh8_A P67PHOX, NCF-2, neutrop 99.1 8.9E-09 3E-13 80.7 19.3 128 35-173 8-150 (213)
130 4f3v_A ESX-1 secretion system 99.1 3.2E-09 1.1E-13 85.1 16.1 209 36-255 10-247 (282)
131 4gcn_A Protein STI-1; structur 99.1 2.9E-09 9.9E-14 75.8 13.8 108 33-147 8-119 (127)
132 2c2l_A CHIP, carboxy terminus 99.1 5.3E-10 1.8E-14 91.7 11.1 195 178-383 3-199 (281)
133 2lni_A Stress-induced-phosphop 99.1 3E-09 1E-13 76.3 13.9 118 32-158 15-132 (133)
134 1na0_A Designed protein CTPR3; 99.1 7.2E-09 2.5E-13 73.3 15.4 114 33-155 9-122 (125)
135 2e2e_A Formate-dependent nitri 99.1 1.8E-09 6.2E-14 82.0 12.9 123 43-174 20-145 (177)
136 2xcb_A PCRH, regulatory protei 99.1 1.3E-09 4.6E-14 79.3 11.6 110 17-138 6-115 (142)
137 2vyi_A SGTA protein; chaperone 99.1 5.4E-09 1.9E-13 74.6 14.8 119 33-160 12-130 (131)
138 3u3w_A Transcriptional activat 99.1 1.2E-08 4.2E-13 84.3 18.5 170 72-242 75-265 (293)
139 3u3w_A Transcriptional activat 99.1 8.7E-08 3E-12 79.1 23.5 161 186-346 82-264 (293)
140 1p5q_A FKBP52, FK506-binding p 99.1 4.5E-10 1.5E-14 94.7 9.8 146 46-198 126-283 (336)
141 1p5q_A FKBP52, FK506-binding p 99.1 5.7E-09 2E-13 87.9 16.5 152 8-172 126-293 (336)
142 2qfc_A PLCR protein; TPR, HTH, 99.1 2.8E-08 9.4E-13 82.2 20.0 173 70-242 73-265 (293)
143 3upv_A Heat shock protein STI1 99.1 6.5E-09 2.2E-13 73.9 14.1 98 33-138 4-101 (126)
144 2qfc_A PLCR protein; TPR, HTH, 99.1 5.8E-09 2E-13 86.2 15.8 175 33-207 75-265 (293)
145 2vgx_A Chaperone SYCD; alterna 99.1 1.6E-09 5.6E-14 79.4 10.9 111 54-173 8-118 (148)
146 3gw4_A Uncharacterized protein 99.1 3.8E-09 1.3E-13 82.0 13.6 164 5-172 2-175 (203)
147 1a17_A Serine/threonine protei 99.0 1.6E-08 5.6E-13 75.6 16.4 130 72-206 13-144 (166)
148 3dss_A Geranylgeranyl transfer 99.0 6.8E-07 2.3E-11 73.8 26.8 139 6-157 40-192 (331)
149 2lni_A Stress-induced-phosphop 99.0 1.5E-08 5.3E-13 72.5 15.0 121 68-193 12-132 (133)
150 3gw4_A Uncharacterized protein 99.0 5.5E-09 1.9E-13 81.2 13.1 160 43-207 2-175 (203)
151 1elw_A TPR1-domain of HOP; HOP 99.0 3.4E-08 1.1E-12 68.9 15.8 110 33-151 4-113 (118)
152 1na0_A Designed protein CTPR3; 99.0 3.2E-08 1.1E-12 69.8 15.8 113 72-189 9-121 (125)
153 2vyi_A SGTA protein; chaperone 99.0 1.3E-08 4.4E-13 72.6 13.6 121 69-194 9-129 (131)
154 3sz7_A HSC70 cochaperone (SGT) 99.0 2.5E-08 8.5E-13 74.5 15.0 99 33-139 11-109 (164)
155 2xcb_A PCRH, regulatory protei 99.0 5.7E-09 1.9E-13 75.9 11.1 101 69-173 15-115 (142)
156 3q49_B STIP1 homology and U bo 99.0 1.9E-08 6.5E-13 72.6 13.8 99 32-138 8-106 (137)
157 3dss_A Geranylgeranyl transfer 99.0 1.7E-06 5.9E-11 71.5 26.9 171 43-224 39-237 (331)
158 1hxi_A PEX5, peroxisome target 99.0 7.7E-09 2.6E-13 72.8 11.2 96 35-138 19-114 (121)
159 2fbn_A 70 kDa peptidylprolyl i 99.0 1.8E-08 6E-13 78.0 14.0 122 34-164 39-176 (198)
160 1elr_A TPR2A-domain of HOP; HO 99.0 1.6E-08 5.6E-13 72.1 12.8 114 33-153 4-121 (131)
161 1hxi_A PEX5, peroxisome target 99.0 2.8E-09 9.7E-14 75.1 8.2 93 3-104 25-117 (121)
162 2kck_A TPR repeat; tetratricop 99.0 1.6E-08 5.6E-13 69.8 12.1 101 33-139 6-107 (112)
163 3upv_A Heat shock protein STI1 98.9 4.9E-08 1.7E-12 69.3 14.4 99 71-173 3-101 (126)
164 2fbn_A 70 kDa peptidylprolyl i 98.9 3.3E-09 1.1E-13 82.2 8.6 149 39-194 10-171 (198)
165 4gcn_A Protein STI-1; structur 98.9 3.2E-08 1.1E-12 70.3 13.1 106 72-182 8-119 (127)
166 2dba_A Smooth muscle cell asso 98.9 1.5E-07 5.1E-12 68.7 15.6 112 32-152 27-141 (148)
167 1wao_1 Serine/threonine protei 98.9 6E-09 2.1E-13 92.1 9.4 119 3-133 14-134 (477)
168 2xev_A YBGF; tetratricopeptide 98.9 1.1E-07 3.7E-12 67.7 14.1 100 35-139 4-106 (129)
169 3k9i_A BH0479 protein; putativ 98.9 8.9E-09 3.1E-13 72.1 8.0 91 7-104 2-93 (117)
170 1elw_A TPR1-domain of HOP; HOP 98.8 2.2E-07 7.5E-12 64.7 15.0 97 73-173 5-101 (118)
171 4b4t_Q 26S proteasome regulato 98.8 2.5E-07 8.6E-12 81.0 17.9 208 35-242 6-244 (434)
172 4b4t_Q 26S proteasome regulato 98.8 1.9E-07 6.6E-12 81.7 16.9 205 3-207 12-244 (434)
173 3q49_B STIP1 homology and U bo 98.8 1.3E-07 4.4E-12 68.1 13.1 101 69-173 6-106 (137)
174 3sz7_A HSC70 cochaperone (SGT) 98.8 1.9E-07 6.4E-12 69.7 14.3 101 69-173 8-108 (164)
175 1kt0_A FKBP51, 51 kDa FK506-bi 98.8 1.4E-07 4.7E-12 83.1 15.5 123 33-164 268-405 (457)
176 2kck_A TPR repeat; tetratricop 98.8 1.3E-07 4.3E-12 65.3 12.0 102 69-174 3-107 (112)
177 1elr_A TPR2A-domain of HOP; HO 98.8 6.8E-08 2.3E-12 68.8 10.9 110 72-186 4-119 (131)
178 3rkv_A Putative peptidylprolyl 98.8 1.9E-07 6.5E-12 69.5 13.6 103 33-138 11-126 (162)
179 1wao_1 Serine/threonine protei 98.8 6.4E-09 2.2E-13 91.9 6.2 125 35-168 8-134 (477)
180 1kt0_A FKBP51, 51 kDa FK506-bi 98.8 1.4E-08 4.9E-13 89.3 8.2 158 47-234 248-405 (457)
181 2hr2_A Hypothetical protein; a 98.8 1.9E-07 6.4E-12 67.7 12.6 102 33-137 11-130 (159)
182 1ihg_A Cyclophilin 40; ppiase 98.8 1.6E-07 5.6E-12 80.0 14.3 127 34-164 224-361 (370)
183 2dba_A Smooth muscle cell asso 98.7 5.3E-07 1.8E-11 65.7 14.2 104 69-173 25-128 (148)
184 2xev_A YBGF; tetratricopeptide 98.7 8.2E-07 2.8E-11 63.0 14.6 98 75-173 5-105 (129)
185 3rkv_A Putative peptidylprolyl 98.7 6.4E-08 2.2E-12 72.1 8.9 97 3-104 19-129 (162)
186 3k9i_A BH0479 protein; putativ 98.7 4.9E-08 1.7E-12 68.2 7.6 90 45-139 2-91 (117)
187 2hr2_A Hypothetical protein; a 98.7 6.3E-08 2.1E-12 70.1 8.0 95 3-104 19-134 (159)
188 2if4_A ATFKBP42; FKBP-like, al 98.7 6.2E-08 2.1E-12 81.6 8.5 123 3-137 187-327 (338)
189 3ro3_A PINS homolog, G-protein 98.7 3.9E-07 1.3E-11 67.5 12.1 139 33-171 9-156 (164)
190 1dce_A Protein (RAB geranylger 98.6 3.4E-06 1.2E-10 76.0 19.0 179 43-232 38-244 (567)
191 2if4_A ATFKBP42; FKBP-like, al 98.6 1.7E-07 5.8E-12 79.0 9.6 149 33-208 179-328 (338)
192 3n71_A Histone lysine methyltr 98.6 1E-07 3.5E-12 83.7 8.4 134 4-137 318-463 (490)
193 3ro3_A PINS homolog, G-protein 98.6 6.1E-07 2.1E-11 66.4 11.1 135 72-206 9-156 (164)
194 1zu2_A Mitochondrial import re 98.6 1.6E-07 5.6E-12 67.8 7.1 89 6-103 13-122 (158)
195 1ihg_A Cyclophilin 40; ppiase 98.6 1.3E-06 4.3E-11 74.5 13.8 100 73-173 224-336 (370)
196 2kat_A Uncharacterized protein 98.6 6.2E-07 2.1E-11 62.3 10.0 82 12-102 2-83 (115)
197 1dce_A Protein (RAB geranylger 98.6 3.9E-06 1.3E-10 75.6 17.5 177 7-197 40-244 (567)
198 2l6j_A TPR repeat-containing p 98.5 1E-07 3.6E-12 65.7 5.3 97 33-134 4-103 (111)
199 1zu2_A Mitochondrial import re 98.5 4.9E-07 1.7E-11 65.3 8.2 100 43-152 12-132 (158)
200 1na3_A Designed protein CTPR2; 98.5 2.9E-06 1E-10 55.8 11.2 82 33-122 9-90 (91)
201 3n71_A Histone lysine methyltr 98.5 2.1E-06 7.2E-11 75.5 12.7 131 42-172 318-463 (490)
202 3ma5_A Tetratricopeptide repea 98.5 1.3E-06 4.4E-11 58.9 8.9 65 32-101 6-70 (100)
203 1klx_A Cysteine rich protein B 98.4 5.1E-06 1.8E-10 59.7 12.1 113 7-139 7-127 (138)
204 2kat_A Uncharacterized protein 98.4 2.3E-06 7.8E-11 59.3 8.9 80 51-138 3-82 (115)
205 1klx_A Cysteine rich protein B 98.4 1.3E-05 4.4E-10 57.6 13.0 111 47-174 9-127 (138)
206 1na3_A Designed protein CTPR2; 98.3 1.4E-05 4.9E-10 52.3 10.4 83 70-156 7-89 (91)
207 2l6j_A TPR repeat-containing p 98.3 1.7E-06 5.9E-11 59.4 6.0 95 283-380 3-104 (111)
208 3ma5_A Tetratricopeptide repea 98.2 8E-06 2.8E-10 54.9 8.5 67 69-138 4-70 (100)
209 3bee_A Putative YFRE protein; 98.0 0.00011 3.8E-09 48.2 11.1 73 33-111 6-81 (93)
210 2kc7_A BFR218_protein; tetratr 98.0 8.8E-06 3E-10 54.5 5.1 62 38-104 5-67 (99)
211 3qwp_A SET and MYND domain-con 98.0 3.8E-05 1.3E-09 66.5 10.0 97 4-100 296-399 (429)
212 2kc7_A BFR218_protein; tetratr 97.9 0.00017 5.7E-09 48.1 10.5 55 4-62 9-64 (99)
213 3ly7_A Transcriptional activat 97.9 0.0013 4.3E-08 54.8 17.0 67 141-209 274-340 (372)
214 3ly7_A Transcriptional activat 97.8 0.00026 8.7E-09 58.9 11.9 154 69-255 191-349 (372)
215 3qww_A SET and MYND domain-con 97.8 3.6E-05 1.2E-09 66.5 6.9 93 8-100 311-410 (433)
216 3qww_A SET and MYND domain-con 97.8 8.4E-05 2.9E-09 64.3 8.8 91 46-136 311-409 (433)
217 3qwp_A SET and MYND domain-con 97.7 0.00024 8.3E-09 61.5 10.9 97 40-136 294-398 (429)
218 3bee_A Putative YFRE protein; 97.7 0.00041 1.4E-08 45.4 9.5 68 69-139 3-73 (93)
219 2v5f_A Prolyl 4-hydroxylase su 97.7 0.00061 2.1E-08 45.8 10.2 73 32-104 4-78 (104)
220 1pc2_A Mitochondria fission pr 97.6 0.00044 1.5E-08 49.4 9.2 92 5-104 8-103 (152)
221 3u64_A Protein TP_0956; tetrat 97.5 0.017 5.7E-07 46.2 17.0 51 193-243 218-269 (301)
222 3u64_A Protein TP_0956; tetrat 97.4 0.00056 1.9E-08 54.5 8.4 96 11-113 179-281 (301)
223 3mkq_A Coatomer beta'-subunit; 97.3 0.031 1.1E-06 53.0 19.9 151 118-307 608-759 (814)
224 1pc2_A Mitochondria fission pr 97.2 0.0018 6E-08 46.3 8.1 81 266-348 15-100 (152)
225 4h7y_A Dual specificity protei 97.2 0.026 9E-07 39.8 13.3 111 32-152 12-136 (161)
226 2v5f_A Prolyl 4-hydroxylase su 97.2 0.0043 1.5E-07 41.6 9.2 68 71-138 4-75 (104)
227 3mkq_B Coatomer subunit alpha; 97.1 0.018 6.3E-07 42.2 12.7 100 5-134 15-114 (177)
228 3mkq_A Coatomer beta'-subunit; 97.0 0.019 6.4E-07 54.5 15.6 155 152-345 607-762 (814)
229 3mkq_B Coatomer subunit alpha; 97.0 0.038 1.3E-06 40.6 13.2 131 222-382 13-143 (177)
230 4h7y_A Dual specificity protei 96.8 0.017 6E-07 40.7 9.9 64 296-361 72-135 (161)
231 1nzn_A CGI-135 protein, fissio 96.6 0.016 5.3E-07 39.8 8.1 84 300-385 17-105 (126)
232 4ady_A RPN2, 26S proteasome re 96.3 0.74 2.5E-05 43.6 22.2 87 189-277 500-588 (963)
233 3ffl_A Anaphase-promoting comp 96.3 0.027 9.3E-07 40.6 8.2 60 3-62 28-92 (167)
234 1nzn_A CGI-135 protein, fissio 96.2 0.043 1.5E-06 37.6 8.7 68 33-104 35-106 (126)
235 3lvg_A Clathrin heavy chain 1; 96.1 2.5E-05 8.5E-10 66.4 -9.2 78 213-296 198-275 (624)
236 3ffl_A Anaphase-promoting comp 96.1 0.071 2.4E-06 38.4 9.5 66 33-101 20-92 (167)
237 4fhn_B Nucleoporin NUP120; pro 96.0 0.83 2.8E-05 45.2 19.9 215 35-277 814-1049(1139)
238 4fhn_B Nucleoporin NUP120; pro 95.7 0.34 1.2E-05 47.9 15.9 148 3-160 820-987 (1139)
239 4b4t_P 26S proteasome regulato 95.7 0.94 3.2E-05 39.4 19.4 264 46-310 29-321 (445)
240 1zbp_A Hypothetical protein VP 95.6 0.037 1.3E-06 43.5 6.9 118 41-173 5-129 (273)
241 1wy6_A Hypothetical protein ST 95.6 0.34 1.2E-05 33.5 15.3 148 35-210 7-156 (172)
242 4gns_B Protein CSD3, chitin bi 95.4 0.47 1.6E-05 43.9 14.5 136 28-170 243-397 (754)
243 3lvg_A Clathrin heavy chain 1; 95.0 0.00015 5.2E-09 61.7 -8.3 206 3-239 62-287 (624)
244 1wy6_A Hypothetical protein ST 95.0 0.54 1.8E-05 32.6 14.1 138 225-384 18-155 (172)
245 4gns_B Protein CSD3, chitin bi 95.0 0.18 6.2E-06 46.6 10.5 52 293-345 346-397 (754)
246 3o48_A Mitochondria fission 1 94.9 0.39 1.3E-05 33.1 9.5 66 282-347 38-106 (134)
247 4b4t_P 26S proteasome regulato 94.8 1.9 6.3E-05 37.5 18.1 255 122-378 29-319 (445)
248 2ff4_A Probable regulatory pro 94.3 0.5 1.7E-05 40.3 11.2 72 74-148 173-249 (388)
249 1y8m_A FIS1; mitochondria, unk 94.3 0.9 3.1E-05 31.8 10.8 68 281-348 36-106 (144)
250 1v54_E Cytochrome C oxidase po 94.3 0.34 1.2E-05 31.4 7.4 49 299-347 25-73 (109)
251 2ff4_A Probable regulatory pro 94.2 0.28 9.7E-06 41.8 9.4 75 111-186 173-252 (388)
252 3o48_A Mitochondria fission 1 94.1 0.66 2.2E-05 32.0 9.1 68 33-104 40-110 (134)
253 2y69_E Cytochrome C oxidase su 92.5 0.84 2.9E-05 31.4 7.4 45 338-382 72-116 (152)
254 4b4t_R RPN7, 26S proteasome re 92.2 4 0.00014 35.2 13.7 99 110-208 132-237 (429)
255 4ady_A RPN2, 26S proteasome re 92.2 8.4 0.00029 36.8 26.6 51 156-207 536-588 (963)
256 4b4t_R RPN7, 26S proteasome re 92.2 1.8 6.2E-05 37.4 11.5 101 73-173 132-237 (429)
257 2wpv_A GET4, UPF0363 protein Y 91.9 4.4 0.00015 33.0 17.8 182 40-276 20-215 (312)
258 3txn_A 26S proteasome regulato 91.4 6 0.00021 33.5 24.6 300 33-349 19-344 (394)
259 1v54_E Cytochrome C oxidase po 90.5 2.4 8.3E-05 27.5 9.6 49 265-313 26-74 (109)
260 1zbp_A Hypothetical protein VP 90.2 1 3.4E-05 35.6 7.0 122 3-138 5-129 (273)
261 1y8m_A FIS1; mitochondria, unk 90.2 3.5 0.00012 28.9 11.3 67 107-173 37-106 (144)
262 1qsa_A Protein (soluble lytic 90.0 11 0.00037 34.3 30.3 309 5-347 16-347 (618)
263 4b4t_S RPN3, 26S proteasome re 88.3 1.9 6.6E-05 37.8 8.1 66 33-101 231-299 (523)
264 2y69_E Cytochrome C oxidase su 88.1 4.9 0.00017 27.8 9.6 46 267-312 71-116 (152)
265 3txn_A 26S proteasome regulato 87.5 12 0.00042 31.7 22.4 234 74-311 21-282 (394)
266 3lpz_A GET4 (YOR164C homolog); 87.2 11 0.00039 30.9 21.1 164 77-276 40-214 (336)
267 3esl_A Checkpoint serine/threo 86.2 8.9 0.0003 28.7 10.7 89 54-143 58-149 (202)
268 3lpz_A GET4 (YOR164C homolog); 84.8 15 0.00052 30.2 17.9 49 9-59 10-61 (336)
269 3eiq_C Programmed cell death p 79.7 26 0.00088 29.2 11.8 62 252-314 220-283 (358)
270 4a1g_A Mitotic checkpoint seri 76.2 18 0.00062 25.7 9.7 50 128-177 84-134 (152)
271 3esl_A Checkpoint serine/threo 74.7 24 0.00083 26.4 10.2 53 195-247 95-148 (202)
272 2uwj_G Type III export protein 73.4 16 0.00055 23.7 8.4 14 189-202 49-62 (115)
273 3bu8_A Telomeric repeat-bindin 72.6 13 0.00045 28.0 6.5 48 300-348 88-143 (235)
274 2p58_C Putative type III secre 72.3 17 0.00059 23.6 9.2 15 189-203 50-64 (116)
275 4b4t_S RPN3, 26S proteasome re 71.0 24 0.00081 31.1 8.8 62 1-62 237-299 (523)
276 2wvi_A Mitotic checkpoint seri 70.9 27 0.00092 25.2 9.9 52 91-143 79-130 (164)
277 2d2s_A Exocyst complex compone 70.2 34 0.0012 26.5 8.8 22 79-100 25-46 (235)
278 2wpv_A GET4, UPF0363 protein Y 69.6 44 0.0015 27.2 18.7 46 11-58 13-58 (312)
279 2d2s_A Exocyst complex compone 68.4 39 0.0013 26.2 9.9 90 114-206 23-118 (235)
280 2uwj_G Type III export protein 67.2 23 0.00078 23.0 9.0 50 119-174 49-98 (115)
281 2p58_C Putative type III secre 66.3 24 0.00082 22.9 9.9 50 119-174 50-99 (116)
282 1wdy_A 2-5A-dependent ribonucl 65.5 38 0.0013 26.5 8.9 21 297-317 192-212 (285)
283 4gq2_M Nucleoporin NUP120; bet 65.1 1E+02 0.0036 29.8 14.5 133 37-193 814-950 (950)
284 4aez_C MAD3, mitotic spindle c 64.7 37 0.0013 26.0 7.7 52 126-177 131-183 (223)
285 1ya0_A SMG-7 transcript varian 63.7 78 0.0027 27.9 11.0 73 39-119 158-230 (497)
286 4a1g_A Mitotic checkpoint seri 62.2 39 0.0014 24.0 9.2 25 289-313 106-130 (152)
287 1wdy_A 2-5A-dependent ribonucl 58.9 50 0.0017 25.8 8.5 50 329-378 189-240 (285)
288 2nsz_A Programmed cell death p 56.8 44 0.0015 22.9 6.8 21 220-240 13-33 (129)
289 2ion_A PDCD4, programmed cell 55.2 46 0.0016 23.6 6.6 63 251-314 11-75 (152)
290 3jxi_A Vanilloid receptor-rela 54.2 19 0.00063 28.1 5.0 55 116-170 9-72 (260)
291 2xig_A Ferric uptake regulatio 54.1 55 0.0019 23.1 7.6 44 150-193 32-75 (150)
292 2ijq_A Hypothetical protein; s 53.7 45 0.0015 24.0 6.2 55 6-61 43-103 (161)
293 1ya0_A SMG-7 transcript varian 53.4 1.2E+02 0.004 26.7 10.3 77 76-156 156-232 (497)
294 3pvs_A Replication-associated 53.4 1.1E+02 0.0038 26.4 13.1 54 226-279 267-325 (447)
295 2fe3_A Peroxide operon regulat 53.3 55 0.0019 22.9 7.2 34 158-191 35-68 (145)
296 2nsz_A Programmed cell death p 53.2 52 0.0018 22.5 7.8 62 252-314 10-73 (129)
297 3jxi_A Vanilloid receptor-rela 52.8 12 0.00041 29.3 3.7 25 362-386 230-254 (260)
298 3bqo_A Telomeric repeat-bindin 52.4 17 0.00057 27.1 3.8 21 116-136 124-144 (211)
299 2zu6_B Programmed cell death p 52.1 94 0.0032 25.2 10.2 25 112-136 6-30 (307)
300 1mzb_A Ferric uptake regulatio 51.8 54 0.0018 22.6 6.5 34 159-192 33-66 (136)
301 3eyy_A Putative iron uptake re 51.1 60 0.0021 22.7 6.7 35 335-369 33-67 (145)
302 2ion_A PDCD4, programmed cell 50.1 51 0.0017 23.4 6.1 22 114-135 14-35 (152)
303 2fe3_A Peroxide operon regulat 50.0 63 0.0021 22.6 7.6 43 327-369 29-71 (145)
304 2w57_A Ferric uptake regulatio 49.8 61 0.0021 22.8 6.6 58 135-193 8-66 (150)
305 4ets_A Ferric uptake regulatio 49.8 57 0.002 23.4 6.5 55 138-193 27-83 (162)
306 2ijq_A Hypothetical protein; s 49.8 69 0.0024 23.0 7.3 49 332-380 45-101 (161)
307 3bu8_A Telomeric repeat-bindin 49.3 84 0.0029 23.8 8.0 21 80-100 122-142 (235)
308 1qsa_A Protein (soluble lytic 49.1 1.6E+02 0.0054 26.9 36.2 314 38-379 77-438 (618)
309 2qx5_A Nucleoporin NIC96; mRNA 48.7 1.6E+02 0.0056 27.0 16.4 322 38-384 157-568 (661)
310 3hra_A Ankyrin repeat family p 48.5 67 0.0023 23.4 7.2 12 121-132 14-25 (201)
311 2xig_A Ferric uptake regulatio 48.5 69 0.0023 22.6 8.4 46 325-370 32-77 (150)
312 3kea_A K1L; tropism, ANK repea 47.9 70 0.0024 25.4 7.5 185 116-321 35-225 (285)
313 1mzb_A Ferric uptake regulatio 47.7 66 0.0023 22.2 7.3 36 299-334 33-68 (136)
314 2r9g_A AAA ATPase, central reg 47.6 86 0.0029 23.5 10.2 17 158-174 28-44 (204)
315 3eyy_A Putative iron uptake re 47.0 50 0.0017 23.1 5.7 33 160-192 33-65 (145)
316 2w57_A Ferric uptake regulatio 47.0 73 0.0025 22.5 7.2 36 334-369 32-67 (150)
317 2zu6_B Programmed cell death p 46.7 1.2E+02 0.004 24.7 11.3 59 75-137 6-66 (307)
318 3hra_A Ankyrin repeat family p 45.5 72 0.0025 23.3 6.9 15 339-353 158-172 (201)
319 2o03_A Probable zinc uptake re 45.3 47 0.0016 22.7 5.3 45 114-158 15-59 (131)
320 4gq2_M Nucleoporin NUP120; bet 44.7 2.3E+02 0.0078 27.5 11.8 49 180-228 898-950 (950)
321 3mwm_A ZUR, putative metal upt 42.4 43 0.0015 23.3 4.7 45 114-158 18-62 (139)
322 1bpo_A Protein (clathrin); cla 42.0 1.7E+02 0.006 25.4 14.2 109 46-165 342-450 (494)
323 3mwm_A ZUR, putative metal upt 41.5 60 0.002 22.5 5.4 40 329-368 23-62 (139)
324 2o03_A Probable zinc uptake re 41.1 66 0.0023 21.9 5.5 37 297-333 23-59 (131)
325 4ets_A Ferric uptake regulatio 41.0 97 0.0033 22.2 7.6 43 292-334 40-84 (162)
326 2cos_A Serine/threonine protei 40.6 27 0.00094 19.4 2.6 37 340-381 11-49 (54)
327 2b7e_A PRE-mRNA processing pro 39.4 28 0.00096 20.0 2.7 29 126-154 3-31 (59)
328 1ug3_A EIF4GI, eukaryotic prot 38.8 1.2E+02 0.004 25.1 7.6 25 75-99 14-38 (339)
329 2fu4_A Ferric uptake regulatio 36.0 73 0.0025 19.3 7.4 61 310-371 8-69 (83)
330 1bpo_A Protein (clathrin); cla 36.0 2.2E+02 0.0075 24.8 10.6 143 227-382 342-484 (494)
331 3vu7_H DNA repair protein REV1 35.6 80 0.0027 21.5 4.9 47 15-61 42-88 (124)
332 3eu9_A Huntingtin-interacting 34.9 86 0.003 23.5 6.0 12 119-130 16-27 (240)
333 3kea_A K1L; tropism, ANK repea 34.8 1.7E+02 0.0057 23.1 8.3 155 114-286 64-225 (285)
334 3bge_A Predicted ATPase; struc 34.7 1.4E+02 0.0049 22.3 9.4 17 158-174 21-37 (201)
335 3ctd_A Putative ATPase, AAA fa 34.5 1.5E+02 0.0051 22.4 9.6 20 158-177 49-68 (213)
336 1k1a_A B-cell lymphoma 3-encod 33.1 1.5E+02 0.0053 22.2 10.1 26 117-142 14-39 (241)
337 3qil_A Clathrin heavy chain 1; 31.8 41 0.0014 22.7 2.9 51 112-165 35-85 (125)
338 3pvs_A Replication-associated 31.6 2.5E+02 0.0086 24.2 14.2 47 160-208 167-221 (447)
339 3bqo_A Telomeric repeat-bindin 30.9 1E+02 0.0034 23.1 5.1 31 77-107 122-152 (211)
340 1k1a_A B-cell lymphoma 3-encod 30.9 1.7E+02 0.0058 21.9 9.9 83 152-239 14-101 (241)
341 4fjo_A DNA repair protein REV1 30.7 85 0.0029 20.2 4.3 50 12-61 12-61 (97)
342 2crb_A Nuclear receptor bindin 30.6 92 0.0031 19.8 4.1 25 74-98 17-41 (97)
343 1wty_A Hypothetical protein TT 28.7 1.3E+02 0.0045 20.0 6.7 78 263-347 2-80 (119)
344 3ltm_A Alpha-REP4; protein eng 28.4 1.8E+02 0.0061 21.4 21.8 17 213-229 156-172 (211)
345 3ljn_A Hypothetical protein; a 28.1 2.4E+02 0.0081 23.1 8.0 15 365-379 252-266 (364)
346 3eu9_A Huntingtin-interacting 27.6 1.6E+02 0.0054 22.0 6.4 48 81-132 15-62 (240)
347 2w2u_A Hypothetical P60 katani 27.5 1E+02 0.0034 19.1 4.1 14 84-97 31-44 (83)
348 3bge_A Predicted ATPase; struc 27.4 1.9E+02 0.0066 21.6 9.1 39 190-228 18-56 (201)
349 2wvi_A Mitotic checkpoint seri 27.0 1.8E+02 0.0061 21.0 11.4 71 106-179 60-131 (164)
350 2rg8_A Programmed cell death p 26.8 1.2E+02 0.0042 21.8 5.0 21 150-170 16-36 (165)
351 4fke_A Aminopeptidase N; zinc 26.8 4.4E+02 0.015 25.4 17.3 157 218-380 690-857 (909)
352 2rpa_A Katanin P60 ATPase-cont 26.7 69 0.0024 19.6 3.1 28 35-62 14-41 (78)
353 2f6m_A Suppressor protein STP2 26.5 1E+02 0.0035 18.1 5.2 27 148-174 6-32 (65)
354 2v6y_A AAA family ATPase, P60 26.1 1.1E+02 0.0037 18.9 4.1 14 84-97 23-36 (83)
355 3ygs_P Procaspase 9; apoptosis 25.8 1.1E+02 0.0038 19.5 4.3 34 334-371 52-85 (97)
356 2r9g_A AAA ATPase, central reg 25.6 2.1E+02 0.0073 21.4 10.4 56 190-246 25-85 (204)
357 2cwy_A Hypothetical protein TT 24.9 1.4E+02 0.0047 19.0 4.6 47 332-380 14-65 (94)
358 3eiq_C Programmed cell death p 24.4 3.1E+02 0.011 22.9 15.5 64 217-281 220-285 (358)
359 1zl8_A LIN-7; heterodimer, alp 24.0 97 0.0033 16.9 3.7 22 8-29 6-27 (53)
360 3ctd_A Putative ATPase, AAA fa 23.6 2.4E+02 0.0082 21.3 9.5 57 190-246 46-107 (213)
361 4aez_C MAD3, mitotic spindle c 23.4 2.5E+02 0.0086 21.5 9.9 54 161-214 131-185 (223)
362 3ltj_A Alpharep-4; protein eng 23.1 2.2E+02 0.0075 20.7 19.3 91 248-347 89-179 (201)
363 3t5v_B Nuclear mRNA export pro 22.2 2.3E+02 0.0078 24.6 6.7 63 216-278 178-249 (455)
364 3t5v_B Nuclear mRNA export pro 21.7 2.2E+02 0.0077 24.7 6.5 61 251-311 178-247 (455)
365 2pnn_A Transient receptor pote 21.7 1.5E+02 0.0053 22.9 5.4 54 116-169 17-79 (273)
366 3e3v_A Regulatory protein RECX 21.5 2.4E+02 0.0082 20.5 10.4 15 232-246 51-65 (177)
367 3qil_A Clathrin heavy chain 1; 21.3 57 0.002 22.0 2.1 53 146-201 34-86 (125)
368 2yru_A Steroid receptor RNA ac 21.2 2E+02 0.0067 19.4 5.3 17 155-171 72-88 (118)
369 3i5p_A Nucleoporin NUP170; hel 21.1 4.4E+02 0.015 23.4 8.5 20 78-97 73-92 (525)
370 3mv2_A Coatomer subunit alpha; 20.6 3.5E+02 0.012 22.1 11.9 29 322-350 210-238 (325)
371 2etb_A Transient receptor pote 20.4 2.9E+02 0.0098 21.0 7.1 20 363-382 227-246 (256)
372 2rg8_A Programmed cell death p 20.4 1.4E+02 0.0048 21.5 4.3 23 114-136 15-37 (165)
373 2p22_A Suppressor protein STP2 20.0 1.6E+02 0.0055 21.4 4.4 57 282-339 109-165 (174)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.9e-36 Score=278.13 Aligned_cols=273 Identities=9% Similarity=0.039 Sum_probs=160.5
Q ss_pred ChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 016027 108 TVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVID 187 (396)
Q Consensus 108 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 187 (396)
+..+|+.++..+.+.|++++|..+|+++.+.+.. +..++..++.++.+.|++++|.++++++.+.. +.+..++..++.
T Consensus 304 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 381 (597)
T 2xpi_A 304 SSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGI 381 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHH
Confidence 3334444444444444444444444444433221 33444444444444444444444444444332 334556666666
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHH
Q 016027 188 GLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVED 267 (396)
Q Consensus 188 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 267 (396)
+|.+.|++++|.++|+++.+..+ .+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..++..++.+|.+.|++++
T Consensus 382 ~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~ 459 (597)
T 2xpi_A 382 YYLCVNKISEARRYFSKSSTMDP-QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILL 459 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHH
Confidence 66666666666666666665433 245566666666666666666666666666653 2355666666666666667777
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC--hhhHHHHHHHHHhcCChhHHHHH
Q 016027 268 AMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCR----GCDID--LDTSTMLIHLLCRMYKFDEASAE 341 (396)
Q Consensus 268 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~~~~~~a~~~ 341 (396)
|.++|+++.+.. +.+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.+.
T Consensus 460 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~ 538 (597)
T 2xpi_A 460 ANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDA 538 (597)
T ss_dssp HHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 777666666553 225666666666667777777777777666654 44455 55666677777777777777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhccchh
Q 016027 342 FEDMIRRGLVPHYLTFKRLNDEFKKRGMTALAQKLCNVMSSVPRS 386 (396)
Q Consensus 342 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 386 (396)
++++.+.+ +.+..+|..+..+|.+.|++++|.+.++++.+..+.
T Consensus 539 ~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 582 (597)
T 2xpi_A 539 LNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN 582 (597)
T ss_dssp HHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence 77666644 335666666666777777777777777666554433
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.7e-36 Score=275.57 Aligned_cols=369 Identities=13% Similarity=0.054 Sum_probs=303.8
Q ss_pred hhhhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcc-----------cccCCCC
Q 016027 2 IKVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLD-----------MVKNFDS 70 (396)
Q Consensus 2 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----------~~~~~~~ 70 (396)
+..|.+.|++++|..+|..++.. .++ ..++..++.+|.+.|++++|+++|+++.... ...+.+.
T Consensus 124 ~~~~~~~g~~~~A~~~~~~~~~~--~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (597)
T 2xpi_A 124 AQVYCCTGDYARAKCLLTKEDLY--NRS---SACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKL 198 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHTCGG--GTC---HHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCH
T ss_pred HHHHHHcCcHHHHHHHHHHHhcc--ccc---hhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccch
Confidence 45566677777777776666542 233 5577777777777777777777777432211 0012244
Q ss_pred chhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHH-----------------------------------
Q 016027 71 GASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNIL----------------------------------- 115 (396)
Q Consensus 71 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l----------------------------------- 115 (396)
+..+|+.++.+|.+.|++++|.++|+++...+|. +...+..+
T Consensus 199 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 275 (597)
T 2xpi_A 199 EASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK---CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLY 275 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch---hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHH
Confidence 5788889999999999999999999998876543 33333333
Q ss_pred ---HHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 016027 116 ---LNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEA 192 (396)
Q Consensus 116 ---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 192 (396)
+..|.+.|++++|.++|+++.+. +++..+++.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.++.+.
T Consensus 276 ~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 352 (597)
T 2xpi_A 276 MLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHES 352 (597)
T ss_dssp HTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHH
T ss_pred HHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHh
Confidence 44555678888899999888765 4789999999999999999999999999999876 55788899999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHH
Q 016027 193 GRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLY 272 (396)
Q Consensus 193 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 272 (396)
|++++|..+++++.+..+ .+..++..++.+|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|
T Consensus 353 g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 430 (597)
T 2xpi_A 353 GEKNKLYLISNDLVDRHP-EKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAY 430 (597)
T ss_dssp TCHHHHHHHHHHHHHHCT-TSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999987654 478899999999999999999999999999864 337889999999999999999999999
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC----
Q 016027 273 RKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRR---- 348 (396)
Q Consensus 273 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---- 348 (396)
+++.+.+ +.+..++..++.+|.+.|++++|.++|+++.+..+. ++.+|+.++..|.+.|++++|.++|+++.+.
T Consensus 431 ~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 508 (597)
T 2xpi_A 431 TTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQY-DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKT 508 (597)
T ss_dssp HHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcc
Confidence 9999875 347889999999999999999999999999987544 8899999999999999999999999999875
Q ss_pred CCCCC--HHHHHHHHHHHHHcCCchHHHHHHHHHhccch
Q 016027 349 GLVPH--YLTFKRLNDEFKKRGMTALAQKLCNVMSSVPR 385 (396)
Q Consensus 349 ~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 385 (396)
+..|+ ..+|..++.+|.+.|++++|.++++++.+..+
T Consensus 509 ~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 547 (597)
T 2xpi_A 509 QSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLST 547 (597)
T ss_dssp CCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS
T ss_pred ccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 66777 78999999999999999999999999876544
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=7.6e-34 Score=246.84 Aligned_cols=366 Identities=13% Similarity=0.060 Sum_probs=325.5
Q ss_pred hhhhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHH
Q 016027 2 IKVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDS 81 (396)
Q Consensus 2 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 81 (396)
...+.+.|++++|++.+..+++. .|+ +..++..++..+...|++++|...++.+.+.. |.+..++..++..
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~--~p~--~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-----p~~~~~~~~lg~~ 76 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQ--EPD--NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-----PLLAEAYSNLGNV 76 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCchHHHHHHHHH
Confidence 45678899999999999999874 455 36788899999999999999999999999875 8889999999999
Q ss_pred HHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHH
Q 016027 82 LCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVD 161 (396)
Q Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 161 (396)
+.+.|++++|.+.|+++...+|. +...|..++.++.+.|++++|.+.|+++.+..+. +...+..+...+...|+++
T Consensus 77 ~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~ 152 (388)
T 1w3b_A 77 YKERGQLQEAIEHYRHALRLKPD---FIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLE 152 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHH
T ss_pred HHHCCCHHHHHHHHHHHHHcCcc---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHH
Confidence 99999999999999999987554 6778999999999999999999999999987533 5667888999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 016027 162 RAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMI 241 (396)
Q Consensus 162 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 241 (396)
+|.+.|+++.+.. +.+..++..+..++...|++++|...|+++.+.++. +...+..+...+...|++++|...+.+..
T Consensus 153 ~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al 230 (388)
T 1w3b_A 153 EAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRAL 230 (388)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999999874 456788999999999999999999999999997663 67889999999999999999999999998
Q ss_pred HCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhh
Q 016027 242 SRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDT 321 (396)
Q Consensus 242 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 321 (396)
...+ .+..++..+...+...|++++|...|+++.+.+. .+..++..+..++.+.|++++|...++++.+..+ .+..+
T Consensus 231 ~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~ 307 (388)
T 1w3b_A 231 SLSP-NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP-THADS 307 (388)
T ss_dssp HHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCT-TCHHH
T ss_pred hhCc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHH
Confidence 8743 3678899999999999999999999999998753 3677899999999999999999999999998753 48899
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhccchh
Q 016027 322 STMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFKKRGMTALAQKLCNVMSSVPRS 386 (396)
Q Consensus 322 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 386 (396)
+..+...+...|++++|...++++++.. +.+..++..+..++.+.|++++|...++++.+..+.
T Consensus 308 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~ 371 (388)
T 1w3b_A 308 LNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 371 (388)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 9999999999999999999999998853 456788999999999999999999999998775443
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=4.4e-31 Score=229.45 Aligned_cols=348 Identities=16% Similarity=0.112 Sum_probs=307.1
Q ss_pred hhhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHH
Q 016027 3 KVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSL 82 (396)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 82 (396)
..+...|++++|...+..+++. .|+ +..+|..++.++.+.|++++|+..|+++.... |.+..++..++.++
T Consensus 41 ~~~~~~~~~~~a~~~~~~a~~~--~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~l~~~~ 111 (388)
T 1w3b_A 41 SIHFQCRRLDRSAHFSTLAIKQ--NPL--LAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-----PDFIDGYINLAAAL 111 (388)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhc--CCC--chHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-----cchHHHHHHHHHHH
Confidence 4567889999999999998874 444 47799999999999999999999999999875 77888999999999
Q ss_pred HHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHH
Q 016027 83 CKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDR 162 (396)
Q Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 162 (396)
...|++++|.+.|+++...+|. +...+..+...+...|++++|.+.|+++.+..+. +..+|..+...+...|++++
T Consensus 112 ~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~ 187 (388)
T 1w3b_A 112 VAAGDMEGAVQAYVSALQYNPD---LYCVRSDLGNLLKALGRLEEAKACYLKAIETQPN-FAVAWSNLGCVFNAQGEIWL 187 (388)
T ss_dssp HHHSCSSHHHHHHHHHHHHCTT---CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999987654 6678888999999999999999999999887433 67899999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 016027 163 AIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMIS 242 (396)
Q Consensus 163 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 242 (396)
|+..|+++.+.+ +.+...+..+..++...|++++|...+++.....+ .+..++..+..++...|++++|...|+++.+
T Consensus 188 A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 265 (388)
T 1w3b_A 188 AIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHAVVHGNLACVYYEQGLIDLAIDTYRRAIE 265 (388)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999999875 55678889999999999999999999999998755 3678899999999999999999999999999
Q ss_pred CCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhH
Q 016027 243 RGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTS 322 (396)
Q Consensus 243 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 322 (396)
.++ .++.++..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|...++++.+..+ .+..++
T Consensus 266 ~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~ 342 (388)
T 1w3b_A 266 LQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP-EFAAAH 342 (388)
T ss_dssp TCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCT-TCHHHH
T ss_pred hCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHH
Confidence 753 367889999999999999999999999999875 45788999999999999999999999999998643 368899
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 016027 323 TMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFKKRGM 369 (396)
Q Consensus 323 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 369 (396)
..++.++.+.|++++|...|+++++.. +.+...|..+...+...|+
T Consensus 343 ~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 343 SNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHhHHHHHHHccC
Confidence 999999999999999999999999853 3456778788777766653
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=5.8e-32 Score=238.73 Aligned_cols=186 Identities=15% Similarity=0.230 Sum_probs=138.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCC---------HHHHHHHHHHHHHcCCCCCHHH
Q 016027 111 VYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRR---------VDRAIRLVKEMRKEGIEPNAIV 181 (396)
Q Consensus 111 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~~ 181 (396)
.++.++.+|++.|++++|+++|++|.+.|+.||..+|+.||.+|++.+. +++|.++|++|.+.|+.||..+
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 4666677777777777777777777777777777777777777765443 5667777777777777777777
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhc
Q 016027 182 YNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSK 261 (396)
Q Consensus 182 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 261 (396)
|+.++.+|++.|++++|.++|++|.+.|..|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~ 187 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD 187 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 016027 262 FGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCK 296 (396)
Q Consensus 262 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 296 (396)
.|++++|.+++++|.+.+..|+..||+.++..|..
T Consensus 188 ~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 188 TKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 77777777777777777777777777777776654
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=1.1e-31 Score=237.03 Aligned_cols=207 Identities=18% Similarity=0.203 Sum_probs=182.4
Q ss_pred hHHHHHHHHHHhCCCCCCh-hHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC---------H
Q 016027 126 KDAERFWLEMRKENVTPNV-VTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGR---------F 195 (396)
Q Consensus 126 ~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~ 195 (396)
..+..+.+++.+.+..+.+ ..++.+|.+|++.|++++|+++|++|.+.|+.||..+|+.+|.+|.+.+. .
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 3455666777777666554 46888999999999999999999999999999999999999999987664 6
Q ss_pred HHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHH
Q 016027 196 EEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKM 275 (396)
Q Consensus 196 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 275 (396)
+.|.++|++|...|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 016027 276 IESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRM 332 (396)
Q Consensus 276 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 332 (396)
.+.|+.||..+|+.++.+|++.|+.++|.+++++|.+.+..|+..||+.++..|...
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999998764
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.3e-28 Score=221.87 Aligned_cols=369 Identities=11% Similarity=-0.038 Sum_probs=312.2
Q ss_pred hhhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHH
Q 016027 3 KVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSL 82 (396)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 82 (396)
..+.+.|++++|+..|.+++.. .|+ ..+|..++.++...|++++|+..|+++.+.. |.+..++..++.++
T Consensus 14 ~~~~~~g~~~~A~~~~~~al~~--~p~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 14 NQFFRNKKYDDAIKYYNWALEL--KED---PVFYSNLSACYVSVGDLKKVVEMSTKALELK-----PDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHH--CCC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----SCCHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHhc--Ccc---HHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-----hHHHHHHHHHHHHH
Confidence 5678899999999999999985 366 7799999999999999999999999999975 78889999999999
Q ss_pred HHcCChHHHHHHHHHHhhccCCCC--------------------------------------------------------
Q 016027 83 CKQGRVKAASEYFHKRKELDQSWA-------------------------------------------------------- 106 (396)
Q Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~-------------------------------------------------------- 106 (396)
...|++++|...|+++...++...
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 999999999999999987653110
Q ss_pred --------------------CChHHHHHHHHHHHh---cCChhHHHHHHHHHHh-----CCC--------CCChhHHHHH
Q 016027 107 --------------------PTVRVYNILLNGWFR---SKNVKDAERFWLEMRK-----ENV--------TPNVVTYGTL 150 (396)
Q Consensus 107 --------------------~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~~--------~~~~~~~~~l 150 (396)
.+...+......+.. .|++++|...|+++.+ ... +.+..++..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 013334444444444 8999999999999987 311 1235678889
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCh
Q 016027 151 VEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDL 230 (396)
Q Consensus 151 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 230 (396)
...+...|++++|...++++.+.. |+...+..+..++...|++++|...++++....+ .+..++..+...+...|++
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~ 320 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNFILQNY 320 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHHHTTCT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHHHhCCH
Confidence 999999999999999999999885 3388888999999999999999999999998755 3677899999999999999
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 016027 231 EGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEM 310 (396)
Q Consensus 231 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 310 (396)
++|...++.+.+.... +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++
T Consensus 321 ~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 398 (514)
T 2gw1_A 321 DQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLA 398 (514)
T ss_dssp THHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999999987543 67789999999999999999999999998864 336678889999999999999999999999
Q ss_pred HHcCCC-CC----hhhHHHHHHHHHh---cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhc
Q 016027 311 KCRGCD-ID----LDTSTMLIHLLCR---MYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFKKRGMTALAQKLCNVMSS 382 (396)
Q Consensus 311 ~~~~~~-~~----~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 382 (396)
.+..+. ++ ...+..+...+.. .|++++|...++++++.. +.+..++..+..++.+.|++++|...+++..+
T Consensus 399 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 399 IELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp HHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 875332 11 3388999999999 999999999999999864 44678889999999999999999999999777
Q ss_pred cchhh
Q 016027 383 VPRSM 387 (396)
Q Consensus 383 ~~~~~ 387 (396)
..+..
T Consensus 478 ~~~~~ 482 (514)
T 2gw1_A 478 LARTM 482 (514)
T ss_dssp HCSSH
T ss_pred hcccc
Confidence 65443
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.97 E-value=3.7e-27 Score=208.89 Aligned_cols=348 Identities=13% Similarity=0.050 Sum_probs=281.3
Q ss_pred hHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHH
Q 016027 13 SAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAAS 92 (396)
Q Consensus 13 ~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 92 (396)
.+...+.+.+.. .|+ +..++..++..+.+.|++++|+.+|+++.... |.++.++..++.++...|++++|.
T Consensus 10 ~~~~~~~~~~~~--~p~--~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-----p~~~~~~~~l~~~~~~~g~~~~A~ 80 (450)
T 2y4t_A 10 GVDLGTENLYFQ--SMA--DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-----PDNYIAYYRRATVFLAMGKSKAAL 80 (450)
T ss_dssp ---------------CH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cccccccccccc--cHH--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CccHHHHHHHHHHHHHCCCHHHHH
Confidence 344455566653 344 46799999999999999999999999999874 778999999999999999999999
Q ss_pred HHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh---hHHHHH------------HHHHHcc
Q 016027 93 EYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNV---VTYGTL------------VEGYCRL 157 (396)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~ 157 (396)
..|+++.+.+|. +..++..++.++.+.|++++|...|+++.+..+. +. ..+..+ ...+...
T Consensus 81 ~~~~~al~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 156 (450)
T 2y4t_A 81 PDLTKVIQLKMD---FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGS 156 (450)
T ss_dssp HHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999987654 6889999999999999999999999999986432 34 555555 4458899
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHH
Q 016027 158 RRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKIL 237 (396)
Q Consensus 158 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 237 (396)
|++++|+..++.+.+.. +.+..++..++.++...|++++|+..|+++.+..+ .+..++..++.+|...|++++|...|
T Consensus 157 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~ 234 (450)
T 2y4t_A 157 GDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEV 234 (450)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999874 56788899999999999999999999999988755 47889999999999999999999999
Q ss_pred HHHHHCCCCCChhhHHHH------------HHHHhccCCHHHHHHHHHHHHHCCCCCC----hhhHHHHHHHHHhcCCHH
Q 016027 238 KMMISRGFLPSPTTYNYF------------FRYFSKFGKVEDAMNLYRKMIESGYTPD----RLTYHILLKILCKEDKLD 301 (396)
Q Consensus 238 ~~~~~~~~~~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~ 301 (396)
+.+...... +...+..+ +..+...|++++|...|+++.+.... + ...+..++.++.+.|+++
T Consensus 235 ~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~ 312 (450)
T 2y4t_A 235 RECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPV 312 (450)
T ss_dssp HHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHhCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHH
Confidence 999976422 44555444 78899999999999999999886422 2 347888899999999999
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH------------HHHcC-
Q 016027 302 LAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKRLNDE------------FKKRG- 368 (396)
Q Consensus 302 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~------------~~~~g- 368 (396)
+|...++++.+..+. +..++..++.+|...|++++|...++++++.. +.+...+..+..+ |...|
T Consensus 313 ~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~ 390 (450)
T 2y4t_A 313 EAIRVCSEVLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLEKAQRLLKQSQKRDYYKILGV 390 (450)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHHHHHHSCCSGGGSCS
T ss_pred HHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHhhcccchhHHHHhCC
Confidence 999999999887533 78999999999999999999999999999853 3345566666533 33344
Q ss_pred ----CchHHHHHHHH
Q 016027 369 ----MTALAQKLCNV 379 (396)
Q Consensus 369 ----~~~~A~~~~~~ 379 (396)
+.+++.+.+++
T Consensus 391 ~~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 391 KRNAKKQEIIKAYRK 405 (450)
T ss_dssp STTCCTTHHHHHHHH
T ss_pred CccCCHHHHHHHHHH
Confidence 56677888886
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.97 E-value=4.2e-27 Score=208.51 Aligned_cols=355 Identities=14% Similarity=0.066 Sum_probs=288.7
Q ss_pred hhhhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHH
Q 016027 2 IKVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDS 81 (396)
Q Consensus 2 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 81 (396)
...+.+.|++++|+..|.++++. .|+ +..+|..++.++...|++++|+..|+++.+.. |.+..++..++.+
T Consensus 33 ~~~~~~~g~~~~A~~~~~~~l~~--~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 33 GKKLLAAGQLADALSQFHAAVDG--DPD--NYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-----MDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCc--cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-----CCcHHHHHHHHHH
Confidence 45788999999999999999874 444 37799999999999999999999999999975 7788999999999
Q ss_pred HHHcCChHHHHHHHHHHhhccCCCCCCh---HHHHHH------------HHHHHhcCChhHHHHHHHHHHhCCCCCChhH
Q 016027 82 LCKQGRVKAASEYFHKRKELDQSWAPTV---RVYNIL------------LNGWFRSKNVKDAERFWLEMRKENVTPNVVT 146 (396)
Q Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 146 (396)
|...|++++|.+.|+++...+|. +. ..+..+ ...+...|++++|+..|+++.+... .+..+
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~ 179 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKSNPS---ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCV-WDAEL 179 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTSCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCC---ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHH
Confidence 99999999999999999986443 33 555555 4458899999999999999988743 47889
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHH------
Q 016027 147 YGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSL------ 220 (396)
Q Consensus 147 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l------ 220 (396)
+..++.++...|++++|++.++++.+.. +.+..++..++.++...|++++|+..|+++....+. +...+..+
T Consensus 180 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~~~ 257 (450)
T 2y4t_A 180 RELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKL 257 (450)
T ss_dssp HHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHH
Confidence 9999999999999999999999998874 567889999999999999999999999999986553 44455444
Q ss_pred ------HHHHHhcCChHHHHHHHHHHHHCCCCCC----hhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 016027 221 ------VKGYCKAGDLEGASKILKMMISRGFLPS----PTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHIL 290 (396)
Q Consensus 221 ------~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 290 (396)
+..+...|++++|...|+.+.+.... + ...+..+..++.+.|++++|...++++.+.. +.+...+..+
T Consensus 258 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l 335 (450)
T 2y4t_A 258 NKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDR 335 (450)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 78999999999999999999986422 2 3478888999999999999999999998864 3367899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH------------HHhcC-----ChhHHHHHHHH-HHHCC--C
Q 016027 291 LKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHL------------LCRMY-----KFDEASAEFED-MIRRG--L 350 (396)
Q Consensus 291 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~------------~~~~~-----~~~~a~~~~~~-~~~~~--~ 350 (396)
+.+|...|++++|...++++.+..+. +...+..+..+ |...| +.+++.+.+++ .++.. .
T Consensus 336 ~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~ 414 (450)
T 2y4t_A 336 AEAYLIEEMYDEAIQDYETAQEHNEN-DQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDN 414 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGG
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999987543 56666666633 33344 56677888886 34321 1
Q ss_pred CCCH-------HHHHHHHHHHHHcCCchHHH
Q 016027 351 VPHY-------LTFKRLNDEFKKRGMTALAQ 374 (396)
Q Consensus 351 ~p~~-------~~~~~l~~~~~~~g~~~~A~ 374 (396)
.|+. ..+..+..+|...|+.+++.
T Consensus 415 ~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~ 445 (450)
T 2y4t_A 415 FQNEEEKKKAEKKFIDIAAAKEVLSDPEMRK 445 (450)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-
T ss_pred CCCchHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 1222 25667777777777766543
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.96 E-value=2.5e-26 Score=208.26 Aligned_cols=367 Identities=13% Similarity=0.027 Sum_probs=294.4
Q ss_pred hhhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHH
Q 016027 3 KVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSL 82 (396)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 82 (396)
..+.+.|++++|+..|.+++.. .|+ +..+|..++.++...|++++|++.|+++.... |.++.++..++.++
T Consensus 33 ~~~~~~g~~~~A~~~~~~al~~--~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 33 NHFFTAKNFNEAIKYYQYAIEL--DPN--EPVFYSNISACYISTGDLEKVIEFTTKALEIK-----PDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHTTCCC-CHHHHHHHHHH--CTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHhh--CCC--CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CchHHHHHHHHHHH
Confidence 5678899999999999999985 454 47899999999999999999999999999985 88899999999999
Q ss_pred HHcCChHHHHHHHHHHhhccCCCCC-----------------------------------ChH-----------------
Q 016027 83 CKQGRVKAASEYFHKRKELDQSWAP-----------------------------------TVR----------------- 110 (396)
Q Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~-----------------------------------~~~----------------- 110 (396)
...|++++|.+.|+ ....+|.... +..
T Consensus 104 ~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (537)
T 3fp2_A 104 ESLGNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSS 182 (537)
T ss_dssp HHHTCHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHT
T ss_pred HHcCCHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHH
Confidence 99999999999996 3333222111 000
Q ss_pred -------------HHHHHHHHHHh--------cCChhHHHHHHHHHHhCCCCCC-------hhHHHHHHHHHHccCCHHH
Q 016027 111 -------------VYNILLNGWFR--------SKNVKDAERFWLEMRKENVTPN-------VVTYGTLVEGYCRLRRVDR 162 (396)
Q Consensus 111 -------------~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~ 162 (396)
....+...+.. .+++++|..+|+++.+..+. + ..++..+...+...|++++
T Consensus 183 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~ 261 (537)
T 3fp2_A 183 VNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLKNNLLD 261 (537)
T ss_dssp SCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhcccHHH
Confidence 11112111111 24789999999999876433 3 2356777788889999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 016027 163 AIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMIS 242 (396)
Q Consensus 163 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 242 (396)
|...++.+.+. .|+...+..+...+...|++++|...++++.+..+ .+..++..+..++...|++++|...++++.+
T Consensus 262 A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 338 (537)
T 3fp2_A 262 AQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP-EYPPTYYHRGQMYFILQDYKNAKEDFQKAQS 338 (537)
T ss_dssp HHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 99999999987 45588888999999999999999999999998765 3678899999999999999999999999998
Q ss_pred CCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-----C
Q 016027 243 RGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCD-----I 317 (396)
Q Consensus 243 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~ 317 (396)
.... +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+..+. .
T Consensus 339 ~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 416 (537)
T 3fp2_A 339 LNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHV 416 (537)
T ss_dssp HCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSS
T ss_pred hCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHH
Confidence 7533 67789999999999999999999999998875 336778889999999999999999999998765321 1
Q ss_pred ChhhHHHHHHHHHhc----------CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhccchh
Q 016027 318 DLDTSTMLIHLLCRM----------YKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFKKRGMTALAQKLCNVMSSVPRS 386 (396)
Q Consensus 318 ~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 386 (396)
....+.....++... |++++|...|+++++.. +.+...+..+..++.+.|++++|.+.+++..+..+.
T Consensus 417 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 494 (537)
T 3fp2_A 417 GIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILART 494 (537)
T ss_dssp TTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 222344556777777 99999999999999864 456788999999999999999999999997776544
No 11
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=7.8e-26 Score=203.79 Aligned_cols=340 Identities=12% Similarity=-0.004 Sum_probs=287.6
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHH
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVY 112 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 112 (396)
...+...+..+.+.|++++|+..|+++.... |++.++..++.++...|++++|.+.++++.+.+|. +..+|
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~ 76 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK------EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPD---YSKVL 76 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSC---CHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC------ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChH---HHHHH
Confidence 4578999999999999999999999999973 57899999999999999999999999999987654 77899
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCC--------------------------------------------------
Q 016027 113 NILLNGWFRSKNVKDAERFWLEMRKENVTP-------------------------------------------------- 142 (396)
Q Consensus 113 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------------------------------------------------- 142 (396)
..++.++.+.|++++|...|+++...+...
T Consensus 77 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (514)
T 2gw1_A 77 LRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQE 156 (514)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhcc
Confidence 999999999999999999999998764311
Q ss_pred ----------------------------ChhHHHHHHHHHHc---cCCHHHHHHHHHHHHH-----cCC--------CCC
Q 016027 143 ----------------------------NVVTYGTLVEGYCR---LRRVDRAIRLVKEMRK-----EGI--------EPN 178 (396)
Q Consensus 143 ----------------------------~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~~--------~~~ 178 (396)
+...+......+.. .|++++|+.+++++.+ ... +.+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (514)
T 2gw1_A 157 NLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKL 236 (514)
T ss_dssp CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHH
T ss_pred CCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHH
Confidence 12233333333443 8999999999999988 311 223
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 016027 179 AIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRY 258 (396)
Q Consensus 179 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 258 (396)
..++..+..++...|++++|...++++.+..+. ...+..+..++...|++++|...++.+.+... .+..++..+...
T Consensus 237 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~ 313 (514)
T 2gw1_A 237 AISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQM 313 (514)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc-CCHHHHHHHHHH
Confidence 567788889999999999999999999987665 88899999999999999999999999998753 377889999999
Q ss_pred HhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHH
Q 016027 259 FSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEA 338 (396)
Q Consensus 259 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 338 (396)
+...|++++|...++++.+.... +...+..+...+...|++++|...++++.+..+. +..++..+...+...|++++|
T Consensus 314 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A 391 (514)
T 2gw1_A 314 NFILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE-APEVPNFFAEILTDKNDFDKA 391 (514)
T ss_dssp HHHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999999987533 6778888999999999999999999999987543 678899999999999999999
Q ss_pred HHHHHHHHHCCC-CCC----HHHHHHHHHHHHH---cCCchHHHHHHHHHhccchh
Q 016027 339 SAEFEDMIRRGL-VPH----YLTFKRLNDEFKK---RGMTALAQKLCNVMSSVPRS 386 (396)
Q Consensus 339 ~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~ 386 (396)
...++++.+... .++ ...+..+..++.. .|++++|.+.++++....+.
T Consensus 392 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~ 447 (514)
T 2gw1_A 392 LKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPR 447 (514)
T ss_dssp HHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcc
Confidence 999999987421 122 3388899999999 99999999999997765443
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.96 E-value=1.7e-24 Score=185.80 Aligned_cols=319 Identities=13% Similarity=0.067 Sum_probs=243.9
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHH
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVY 112 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 112 (396)
...+..++..+...|++++|+..|+++.+.. |.++.++..++..+...|++++|...|+++...+|. +...+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-----p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~ 74 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-----PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD---FTAAR 74 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---cchHH
Confidence 5688999999999999999999999999875 778899999999999999999999999999987554 67889
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCC--CChhHHHHH------------HHHHHccCCHHHHHHHHHHHHHcCCCCC
Q 016027 113 NILLNGWFRSKNVKDAERFWLEMRKENVT--PNVVTYGTL------------VEGYCRLRRVDRAIRLVKEMRKEGIEPN 178 (396)
Q Consensus 113 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 178 (396)
..+..++...|++++|...|+++.+.... .+...+..+ ...+...|++++|++.++++.+.. +.+
T Consensus 75 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~ 153 (359)
T 3ieg_A 75 LQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWD 153 (359)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCc
Confidence 99999999999999999999999886420 144455444 577788888888888888888764 456
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHH-----
Q 016027 179 AIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYN----- 253 (396)
Q Consensus 179 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----- 253 (396)
...+..+..++...|++++|...++++.+..+ .+..++..+...+...|++++|...++...+.... +...+.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~ 231 (359)
T 3ieg_A 154 AELRELRAECFIKEGEPRKAISDLKAASKLKS-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQV 231 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCS-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHH
Confidence 77788888888888888888888888887654 36777888888888888888888888888876322 333332
Q ss_pred -------HHHHHHhccCCHHHHHHHHHHHHHCCCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhH
Q 016027 254 -------YFFRYFSKFGKVEDAMNLYRKMIESGYTPDR----LTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTS 322 (396)
Q Consensus 254 -------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 322 (396)
.+...+...|++++|...++++.+.... +. ..+..+..++...|++++|...++++.+..+. +..++
T Consensus 232 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~ 309 (359)
T 3ieg_A 232 KKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPD-NVNAL 309 (359)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-cHHHH
Confidence 2255577778888888888887775422 22 22445667777788888888888888776433 67777
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 016027 323 TMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFK 365 (396)
Q Consensus 323 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 365 (396)
..+..++...|++++|...|+++++.. +.+...+..+..+..
T Consensus 310 ~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 310 KDRAEAYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQR 351 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHH
Confidence 778888888888888888888887753 233455555555443
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.95 E-value=2.4e-23 Score=178.53 Aligned_cols=306 Identities=10% Similarity=0.020 Sum_probs=260.3
Q ss_pred chhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHH
Q 016027 71 GASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTL 150 (396)
Q Consensus 71 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 150 (396)
++..+..++..+...|++++|...|+++...+|. +...+..+..++...|++++|...|+++.+..+. +...+..+
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l 77 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD---NYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQR 77 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc---cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHH
Confidence 4567889999999999999999999999987654 7889999999999999999999999999887433 67889999
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCC---CCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHhcCCCCchh
Q 016027 151 VEGYCRLRRVDRAIRLVKEMRKEGIE---PNAIVYNTV------------IDGLVEAGRFEEVSGMMERFLVCEPGPTMV 215 (396)
Q Consensus 151 ~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 215 (396)
..++...|++++|...++++.+.. + .+...+..+ ...+...|++++|+..++++.+..+ .+..
T Consensus 78 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~ 155 (359)
T 3ieg_A 78 GHLLLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV-WDAE 155 (359)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHH
T ss_pred HHHHHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CchH
Confidence 999999999999999999998873 2 244455444 5788999999999999999998765 4778
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHH-------
Q 016027 216 TYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYH------- 288 (396)
Q Consensus 216 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~------- 288 (396)
.+..+..++...|++++|...++.+.+.. +.+..++..+...+...|++++|...+++..+.... +...+.
T Consensus 156 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~ 233 (359)
T 3ieg_A 156 LRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKK 233 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHH
Confidence 89999999999999999999999999875 447889999999999999999999999999886422 333332
Q ss_pred -----HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 016027 289 -----ILLKILCKEDKLDLAIQVSKEMKCRGCDIDL----DTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKR 359 (396)
Q Consensus 289 -----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ 359 (396)
.+...+...|++++|...++++.+..+. +. ..+..+..++...|++++|...+++..+.. +.+..++..
T Consensus 234 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 311 (359)
T 3ieg_A 234 LNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKD 311 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHH
Confidence 2366788999999999999999987543 33 235567889999999999999999999864 447889999
Q ss_pred HHHHHHHcCCchHHHHHHHHHhccchh
Q 016027 360 LNDEFKKRGMTALAQKLCNVMSSVPRS 386 (396)
Q Consensus 360 l~~~~~~~g~~~~A~~~~~~~~~~~~~ 386 (396)
+..++.+.|++++|...+++..+..+.
T Consensus 312 ~~~~~~~~g~~~~A~~~~~~a~~~~p~ 338 (359)
T 3ieg_A 312 RAEAYLIEEMYDEAIQDYEAAQEHNEN 338 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 999999999999999999998776554
No 14
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.94 E-value=2.8e-24 Score=194.78 Aligned_cols=339 Identities=12% Similarity=0.049 Sum_probs=269.2
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHH
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVY 112 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 112 (396)
...|..++..+.+.|++++|+..|+++.... |.++.++..++.+|...|++++|++.|+++...+|. +..++
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~ 96 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-----PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD---HSKAL 96 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-----CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc---hHHHH
Confidence 4688999999999999999999999999985 888999999999999999999999999999988655 78899
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh-------------------------------------h----------
Q 016027 113 NILLNGWFRSKNVKDAERFWLEMRKENVTPNV-------------------------------------V---------- 145 (396)
Q Consensus 113 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------------------------------------~---------- 145 (396)
..++.++...|++++|...|+.+ .....+.. .
T Consensus 97 ~~la~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (537)
T 3fp2_A 97 LRRASANESLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFD 175 (537)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcC
Confidence 99999999999999999999643 22111110 0
Q ss_pred --------------------HHHHHHHHHHc--------cCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHH
Q 016027 146 --------------------TYGTLVEGYCR--------LRRVDRAIRLVKEMRKEGIEPNA-------IVYNTVIDGLV 190 (396)
Q Consensus 146 --------------------~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~ 190 (396)
....+...+.. .|++++|+.+++.+.+.. +.+. .++..+...+.
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~ 254 (537)
T 3fp2_A 176 SHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHF 254 (537)
T ss_dssp HHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHH
Confidence 11111111111 247888999999988763 2232 34666777888
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHH
Q 016027 191 EAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMN 270 (396)
Q Consensus 191 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 270 (396)
..|++++|...++++.+..+ +...+..+...+...|++++|...++.+.+... .+..++..+...+...|++++|..
T Consensus 255 ~~~~~~~A~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~ 331 (537)
T 3fp2_A 255 LKNNLLDAQVLLQESINLHP--TPNSYIFLALTLADKENSQEFFKFFQKAVDLNP-EYPPTYYHRGQMYFILQDYKNAKE 331 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHCC--CHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcccHHHHHHHHHHHHhcCC--CchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC-CCHHHHHHHHHHHHhcCCHHHHHH
Confidence 99999999999999998654 478888999999999999999999999988753 378889999999999999999999
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC-
Q 016027 271 LYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRG- 349 (396)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~- 349 (396)
.++++.+... .+...+..+..++...|++++|...++++.+..+. +...+..+...+...|++++|...++++++..
T Consensus 332 ~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 409 (537)
T 3fp2_A 332 DFQKAQSLNP-ENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT-LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEE 409 (537)
T ss_dssp HHHHHHHHCT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC
Confidence 9999988753 35678888999999999999999999999987544 67889999999999999999999999987632
Q ss_pred ----CCCCHHHHHHHHHHHHHc----------CCchHHHHHHHHHhccchh
Q 016027 350 ----LVPHYLTFKRLNDEFKKR----------GMTALAQKLCNVMSSVPRS 386 (396)
Q Consensus 350 ----~~p~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~ 386 (396)
.......+.....++.+. |++++|...+++..+..+.
T Consensus 410 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~ 460 (537)
T 3fp2_A 410 VQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPR 460 (537)
T ss_dssp HCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTT
T ss_pred cchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCC
Confidence 111122344555677777 9999999999997765443
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.94 E-value=4.1e-23 Score=175.03 Aligned_cols=284 Identities=13% Similarity=0.001 Sum_probs=191.0
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHH
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVY 112 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 112 (396)
...+..++..+...|++++|+++|+++.+.. |.+..++..++..+...|++++|..+++++...+|. +...|
T Consensus 22 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-----p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~ 93 (330)
T 3hym_B 22 LDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-----PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS---NPVSW 93 (330)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---STHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC---CHHHH
Confidence 4477788888888888888888888888764 666777777888888888888888888888876544 66778
Q ss_pred HHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 016027 113 NILLNGWFRSK-NVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVE 191 (396)
Q Consensus 113 ~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 191 (396)
..+...+...| ++++|...|+++.+.... +...+..+...+...|++++|++.++++.+.. +.+...+..+...+..
T Consensus 94 ~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~ 171 (330)
T 3hym_B 94 FAVGCYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGL 171 (330)
T ss_dssp HHHHHHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHH
Confidence 88888888888 888888888888776432 56677778888888888888888888877764 3345566667777777
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC--------CCChhhHHHHHHHHhccC
Q 016027 192 AGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGF--------LPSPTTYNYFFRYFSKFG 263 (396)
Q Consensus 192 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~ 263 (396)
.|++++|...++++.+..+ .+..++..+...+...|++++|...++++.+... +....++..+..++...|
T Consensus 172 ~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 250 (330)
T 3hym_B 172 TNNSKLAERFFSQALSIAP-EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLK 250 (330)
T ss_dssp TTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTT
T ss_pred HhhHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhc
Confidence 8888888888877777644 3556677777777777777777777777665310 122345555555555555
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 016027 264 KVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLL 329 (396)
Q Consensus 264 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 329 (396)
++++|...++++.+... .+...+..+..++...|++++|...++++.+..+. +...+..+..++
T Consensus 251 ~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~ 314 (330)
T 3hym_B 251 KYAEALDYHRQALVLIP-QNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD-DTFSVTMLGHCI 314 (330)
T ss_dssp CHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSC-CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCc-cchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCC-chHHHHHHHHHH
Confidence 55555555555554431 13444555555555555555555555555443322 344444444444
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.93 E-value=1.2e-22 Score=172.22 Aligned_cols=295 Identities=9% Similarity=-0.003 Sum_probs=251.6
Q ss_pred CCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHH
Q 016027 68 FDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTY 147 (396)
Q Consensus 68 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 147 (396)
.+.++.++..++..+...|++++|.++|+++...+|. +...+..++.++...|++++|..+++++.+... .+...+
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~ 93 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF---HASCLPVHIGTLVELNKANELFYLSHKLVDLYP-SNPVSW 93 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHH
Confidence 4777888999999999999999999999999987654 556777788889999999999999999998743 377889
Q ss_pred HHHHHHHHccC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHh
Q 016027 148 GTLVEGYCRLR-RVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCK 226 (396)
Q Consensus 148 ~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 226 (396)
..+...+...| ++++|...++++.+.. +.+...+..+..++...|++++|+..++++.+..+. +...+..+...+..
T Consensus 94 ~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~ 171 (330)
T 3hym_B 94 FAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGL 171 (330)
T ss_dssp HHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHH
Confidence 99999999999 9999999999999874 456788999999999999999999999999987654 56677789999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCC--------CCCChhhHHHHHHHHHhcC
Q 016027 227 AGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESG--------YTPDRLTYHILLKILCKED 298 (396)
Q Consensus 227 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~ 298 (396)
.|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+.. .+....++..+..++...|
T Consensus 172 ~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 250 (330)
T 3hym_B 172 TNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLK 250 (330)
T ss_dssp TTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTT
T ss_pred HhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhc
Confidence 999999999999999875 3478889999999999999999999999987642 1334568889999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HHcCCch
Q 016027 299 KLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEF-KKRGMTA 371 (396)
Q Consensus 299 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~~ 371 (396)
++++|...++++.+..+. +...+..+..++...|++++|.+.++++.+.. +.+...+..+..++ ...|+.+
T Consensus 251 ~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 251 KYAEALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp CHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC--
T ss_pred CHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCchh
Confidence 999999999999987644 78899999999999999999999999998754 34677788888877 4566544
No 17
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.93 E-value=3.1e-23 Score=178.63 Aligned_cols=296 Identities=11% Similarity=-0.017 Sum_probs=194.6
Q ss_pred HHHcCCHHHHHH-HHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHh
Q 016027 43 YARAGMVEAAIW-TFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFR 121 (396)
Q Consensus 43 ~~~~g~~~~A~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 121 (396)
+...|++++|+. .|+++....+.. ...+...+..++..+...|++++|...|+++...+|. +..++..+..++..
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~ 110 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEEN-PLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK---HMEAWQYLGTTQAE 110 (368)
T ss_dssp -----------CHHHHCCCCCCSSC-TTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT---CHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCC-cccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHH
Confidence 334466666666 666666543110 0112344666666677777777777777776665433 55666666666777
Q ss_pred cCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHH---------------HH
Q 016027 122 SKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNT---------------VI 186 (396)
Q Consensus 122 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---------------l~ 186 (396)
.|++++|...|+++.+..+ .+..++..+..++...|++++|+..++++.+.. +.+...+.. .+
T Consensus 111 ~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (368)
T 1fch_A 111 NEQELLAISALRRCLELKP-DNQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEGAGGAGLGPSKRIL 188 (368)
T ss_dssp TTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC---------------CTT
T ss_pred CcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHhhhhcccHHHHHH
Confidence 7777777777776666542 256666666667777777777777777666653 112222211 12
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCC-chhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCH
Q 016027 187 DGLVEAGRFEEVSGMMERFLVCEPGP-TMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKV 265 (396)
Q Consensus 187 ~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 265 (396)
..+...|++++|...++++.+..+.. +..++..+..++...|++++|...++++.+.. +.+..++..+...+...|++
T Consensus 189 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~ 267 (368)
T 1fch_A 189 GSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQS 267 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCH
Confidence 33337888888888888888765432 46778888888888888888888888888764 33677888888888888888
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----------ChhhHHHHHHHHHhcCCh
Q 016027 266 EDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDI----------DLDTSTMLIHLLCRMYKF 335 (396)
Q Consensus 266 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~~~~ 335 (396)
++|...++++.+.. +.+...+..+..++...|++++|...++++.+..+.. ...+|..+..++...|++
T Consensus 268 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 346 (368)
T 1fch_A 268 EEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQS 346 (368)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCG
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCCh
Confidence 88888888887764 3356778888888888888888888888887653221 267888888889999999
Q ss_pred hHHHHHHHHHH
Q 016027 336 DEASAEFEDMI 346 (396)
Q Consensus 336 ~~a~~~~~~~~ 346 (396)
++|..++++.+
T Consensus 347 ~~A~~~~~~~l 357 (368)
T 1fch_A 347 DAYGAADARDL 357 (368)
T ss_dssp GGHHHHHTTCH
T ss_pred HhHHHhHHHHH
Confidence 98888876443
No 18
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.93 E-value=2.5e-20 Score=166.60 Aligned_cols=338 Identities=13% Similarity=0.063 Sum_probs=290.2
Q ss_pred ccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHH----cCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHH
Q 016027 8 AKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYAR----AGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLC 83 (396)
Q Consensus 8 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 83 (396)
.+++++|+..|.++.+.+ + ..++..++..|.. .+++++|+.+|+++... .++..+..|+..|.
T Consensus 56 ~~~~~~A~~~~~~a~~~~---~---~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-------~~~~a~~~Lg~~y~ 122 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQG---Y---TPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK-------GLPQAQQNLGVMYH 122 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---C---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------TCHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHCC---C---HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-------CCHHHHHHHHHHHH
Confidence 789999999999998742 3 5689999999999 99999999999999874 35677888999999
Q ss_pred H----cCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHH
Q 016027 84 K----QGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFR----SKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYC 155 (396)
Q Consensus 84 ~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 155 (396)
. .+++++|.++|+++... + +...+..+...|.. .+++++|.+.|++..+.| +...+..+...|.
T Consensus 123 ~g~g~~~~~~~A~~~~~~a~~~--~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~ 194 (490)
T 2xm6_A 123 EGNGVKVDKAESVKWFRLAAEQ--G---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYS 194 (490)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHT--T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHHHC--C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHh
Confidence 8 88999999999998875 3 67788889988887 789999999999998875 7788888999988
Q ss_pred c----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHh-
Q 016027 156 R----LRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVE----AGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCK- 226 (396)
Q Consensus 156 ~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 226 (396)
. .+++++|.++|++..+.| +...+..+...|.. .+++++|..+|++..+.+ +...+..+...|..
T Consensus 195 ~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g 268 (490)
T 2xm6_A 195 RGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQG 268 (490)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHT
T ss_pred cCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCC
Confidence 7 899999999999999876 56677788888876 789999999999998753 45667778888887
Q ss_pred ---cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhcc-----CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 016027 227 ---AGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKF-----GKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKED 298 (396)
Q Consensus 227 ---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 298 (396)
.+++++|...|+...+.+ ++..+..+...|... +++++|...|++..+.+ +...+..+...|...|
T Consensus 269 ~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g 342 (490)
T 2xm6_A 269 LAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLG 342 (490)
T ss_dssp TTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSC
T ss_pred CCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCC
Confidence 899999999999998764 556777888888776 89999999999998875 4567777888887766
Q ss_pred ---CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----c
Q 016027 299 ---KLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCR----MYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFKK----R 367 (396)
Q Consensus 299 ---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~ 367 (396)
+.++|..+|++..+.+ ++..+..+...|.. .+++++|...|++..+.+ +...+..+...|.+ .
T Consensus 343 ~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~ 416 (490)
T 2xm6_A 343 SEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVE 416 (490)
T ss_dssp CHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC
T ss_pred CcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCC
Confidence 7899999999999874 78889999999998 899999999999999865 46788889889988 8
Q ss_pred CCchHHHHHHHHHhccc
Q 016027 368 GMTALAQKLCNVMSSVP 384 (396)
Q Consensus 368 g~~~~A~~~~~~~~~~~ 384 (396)
++.++|..+|++..+.+
T Consensus 417 ~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 417 RDYVQAWAWFDTASTND 433 (490)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCC
Confidence 99999999999987765
No 19
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.92 E-value=1.3e-22 Score=174.78 Aligned_cols=315 Identities=8% Similarity=-0.001 Sum_probs=236.6
Q ss_pred HcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHH-HHHHHhhccCCCCC-ChHHHHHHHHHHHhc
Q 016027 45 RAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASE-YFHKRKELDQSWAP-TVRVYNILLNGWFRS 122 (396)
Q Consensus 45 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 122 (396)
..+.++.+...|+.+...+ +. ++...|++++|.+ .|++.....+..+. +...+..+...+.+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~------~~---------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (368)
T 1fch_A 13 DVDFWDKLQAELEEMAKRD------AE---------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQE 77 (368)
T ss_dssp ------------------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHT
T ss_pred CcccHHHHHHHHHHHHcCC------ch---------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHC
Confidence 3444555556666555542 11 3344588999999 99987776544221 356688899999999
Q ss_pred CChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 016027 123 KNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMM 202 (396)
Q Consensus 123 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 202 (396)
|++++|...|+++.+..+ .+..++..+..++...|++++|+..++++.+.. +.+..++..+..++...|++++|...+
T Consensus 78 g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 155 (368)
T 1fch_A 78 GDLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEIL 155 (368)
T ss_dssp TCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999998753 378899999999999999999999999999885 557889999999999999999999999
Q ss_pred HHHHhcCCCCchhhHH-H--------------HHHHHHhcCChHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHhccCCHH
Q 016027 203 ERFLVCEPGPTMVTYT-S--------------LVKGYCKAGDLEGASKILKMMISRGFLP-SPTTYNYFFRYFSKFGKVE 266 (396)
Q Consensus 203 ~~~~~~~~~~~~~~~~-~--------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~ 266 (396)
+++....+.. ...+. . .+..+...|++++|...++++.+..... +..++..+...+...|+++
T Consensus 156 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~ 234 (368)
T 1fch_A 156 RDWLRYTPAY-AHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYD 234 (368)
T ss_dssp HHHHHTSTTT-GGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhCcCc-HHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHH
Confidence 9999876542 22222 1 2333448999999999999999874321 5788999999999999999
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 016027 267 DAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMI 346 (396)
Q Consensus 267 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 346 (396)
+|...++++.+.. +.+..++..+..++...|++++|...++++.+..+. +..++..+..++.+.|++++|...|++++
T Consensus 235 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al 312 (368)
T 1fch_A 235 KAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG-YIRSRYNLGISCINLGAHREAVEHFLEAL 312 (368)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999998874 336788999999999999999999999999987543 78899999999999999999999999998
Q ss_pred HCCCCC----------CHHHHHHHHHHHHHcCCchHHHHHHHH
Q 016027 347 RRGLVP----------HYLTFKRLNDEFKKRGMTALAQKLCNV 379 (396)
Q Consensus 347 ~~~~~p----------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 379 (396)
+..... ...+|..+..++...|++++|..++++
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 313 NMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred HhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 742111 167899999999999999999998875
No 20
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.91 E-value=4.1e-22 Score=171.44 Aligned_cols=232 Identities=12% Similarity=0.033 Sum_probs=122.3
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHH
Q 016027 34 DTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYN 113 (396)
Q Consensus 34 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 113 (396)
..+..++..+.+.|++++|+..|+++.... |.+..++..++.++...|++++|++.|+++...+|. +..+|.
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~ 137 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQD-----PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN---NLKALM 137 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC---CHHHHH
Confidence 346666666666666666666666666653 555666666666666666666666666666655432 455666
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCh----------hHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC--CHHH
Q 016027 114 ILLNGWFRSKNVKDAERFWLEMRKENVTPNV----------VTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEP--NAIV 181 (396)
Q Consensus 114 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~ 181 (396)
.++.++...|++++|...|+++.+.... +. ..+..+...+...|++++|+.+++++.+.. +. +..+
T Consensus 138 ~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~ 215 (365)
T 4eqf_A 138 ALAVSYTNTSHQQDACEALKNWIKQNPK-YKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDL 215 (365)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCHH-HHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCHHH
T ss_pred HHHHHHHccccHHHHHHHHHHHHHhCcc-chHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCHHH
Confidence 6666666666666666666666553211 11 112223445555555555555555555542 11 3445
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhc
Q 016027 182 YNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSK 261 (396)
Q Consensus 182 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 261 (396)
+..+..++...|++++|+..++++.+..+ .+..++..+..+|...|++++|...|+++.+.. +.+..++..+..+|..
T Consensus 216 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 293 (365)
T 4eqf_A 216 QTGLGVLFHLSGEFNRAIDAFNAALTVRP-EDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCIN 293 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHH
Confidence 55555555555555555555555555433 234455555555555555555555555555442 1134445555555555
Q ss_pred cCCHHHHHHHHHHHHH
Q 016027 262 FGKVEDAMNLYRKMIE 277 (396)
Q Consensus 262 ~~~~~~a~~~~~~~~~ 277 (396)
.|++++|...|+++.+
T Consensus 294 ~g~~~~A~~~~~~al~ 309 (365)
T 4eqf_A 294 LGAYREAVSNFLTALS 309 (365)
T ss_dssp HTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 5555555555555443
No 21
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.90 E-value=1e-20 Score=168.59 Aligned_cols=365 Identities=11% Similarity=-0.109 Sum_probs=254.3
Q ss_pred hhhhhccCchhHHHHHHHHhCCC-------CCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhccccc---CCCCch
Q 016027 3 KVLAKAKEFDSAWCLLLDKIGGH-------EVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVK---NFDSGA 72 (396)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~~~-------~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~ 72 (396)
.++...|++++|++.|+++++.. ..|. ...+|..++.+|...|++++|+..++++....... ..+..+
T Consensus 59 ~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~--~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~ 136 (472)
T 4g1t_A 59 YLKHLKGQNEAALECLRKAEELIQQEHADQAEIR--SLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESP 136 (472)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTT--THHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHhcCccccchH--HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhH
Confidence 45778899999999999886521 1233 35689999999999999999999999988753321 123456
Q ss_pred hHHHHHHHHHHHc--CChHHHHHHHHHHhhccCCCCCChHHHHHHHHHH---HhcCChhHHHHHHHHHHhCCCCCChhHH
Q 016027 73 SLFEILLDSLCKQ--GRVKAASEYFHKRKELDQSWAPTVRVYNILLNGW---FRSKNVKDAERFWLEMRKENVTPNVVTY 147 (396)
Q Consensus 73 ~~~~~l~~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 147 (396)
.++..++.++... +++++|++.|+++...+|. +...+..+..++ ...++.++|++.+++..+..+. +..++
T Consensus 137 ~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~---~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~-~~~~~ 212 (472)
T 4g1t_A 137 ELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK---NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD-NQYLK 212 (472)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS-CHHHH
T ss_pred HHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc-chHHH
Confidence 7787777777665 4699999999999988665 566666655553 4567888999999998876433 56666
Q ss_pred HHHHHHHHc----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHH
Q 016027 148 GTLVEGYCR----LRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKG 223 (396)
Q Consensus 148 ~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 223 (396)
..+...+.. .+++++|.+++++..... +.+..++..+...+...|++++|+..++++.+..+. +..++..+..+
T Consensus 213 ~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 290 (472)
T 4g1t_A 213 VLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHCQIGCC 290 (472)
T ss_dssp HHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHHHHHHH
Confidence 666555544 467889999999988874 567788899999999999999999999999987654 66677777666
Q ss_pred HHhc-------------------CChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCh
Q 016027 224 YCKA-------------------GDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDR 284 (396)
Q Consensus 224 ~~~~-------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 284 (396)
|... +.++.|...++...+... .+..++..+...+...|++++|...|++..+....+..
T Consensus 291 y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~ 369 (472)
T 4g1t_A 291 YRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAND-NLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVA 369 (472)
T ss_dssp HHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCT-TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCC-chhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChH
Confidence 5432 235678888888877653 36778889999999999999999999999887544322
Q ss_pred h--hHHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 016027 285 L--TYHILLK-ILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKRLN 361 (396)
Q Consensus 285 ~--~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 361 (396)
. .+..+.. .....|+.++|+..|++..+..+ +..... +....+.+++++.++.+ +.+..+|..+.
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~--~~~~~~---------~~~~~l~~~~~~~l~~~-p~~~~~~~~LG 437 (472)
T 4g1t_A 370 KQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQ--KSREKE---------KMKDKLQKIAKMRLSKN-GADSEALHVLA 437 (472)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCC--CCHHHH---------HHHHHHHHHHHHHHHHC-C-CTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc--ccHHHH---------HHHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 1 2233332 23467899999999999988643 332221 22344556666666654 45678899999
Q ss_pred HHHHHcCCchHHHHHHHHHhccchhhh
Q 016027 362 DEFKKRGMTALAQKLCNVMSSVPRSME 388 (396)
Q Consensus 362 ~~~~~~g~~~~A~~~~~~~~~~~~~~~ 388 (396)
.+|...|++++|++.|++..+.++..+
T Consensus 438 ~~~~~~g~~~~A~~~y~kALe~~~~~p 464 (472)
T 4g1t_A 438 FLQELNEKMQQADEDSERGLESGSLIP 464 (472)
T ss_dssp HHHHHHHHCC-----------------
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCC
Confidence 999999999999999999877655443
No 22
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.90 E-value=2.2e-19 Score=162.13 Aligned_cols=366 Identities=12% Similarity=0.060 Sum_probs=244.6
Q ss_pred hhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHH-HH
Q 016027 5 LAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDS-LC 83 (396)
Q Consensus 5 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~ 83 (396)
+.+.|++++|..+|+++++. .|+ +...|...+..+.+.|++++|..+|+++... .|+..+|...+.. ..
T Consensus 22 ~~~~~~~~~a~~~~e~al~~--~P~--~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~------~p~~~lw~~~~~~~~~ 91 (530)
T 2ooe_A 22 EAQNQPIDKARKTYERLVAQ--FPS--SGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK------VLHIDLWKCYLSYVRE 91 (530)
T ss_dssp HHHSSCHHHHHHHHHHHHTT--CTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT------CCCHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHH--CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------CCChHHHHHHHHHHHH
Confidence 35689999999999999985 455 4779999999999999999999999999987 3467777777653 34
Q ss_pred HcCChHHHHH----HHHHHhhccCCCCCChHHHHHHHHHHHh---------cCChhHHHHHHHHHHhCCCCCChhHHHHH
Q 016027 84 KQGRVKAASE----YFHKRKELDQSWAPTVRVYNILLNGWFR---------SKNVKDAERFWLEMRKENVTPNVVTYGTL 150 (396)
Q Consensus 84 ~~~~~~~A~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 150 (396)
..|++++|.+ +|+.+...-+...++...|...+....+ .|+++.|..+|++.++....+....|...
T Consensus 92 ~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~ 171 (530)
T 2ooe_A 92 TKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDY 171 (530)
T ss_dssp HTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHH
T ss_pred HccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHH
Confidence 5677777665 7776654322223456777777776554 67888888888888763111111233221
Q ss_pred HHHH-------------HccCCHH--------------------------------------------------------
Q 016027 151 VEGY-------------CRLRRVD-------------------------------------------------------- 161 (396)
Q Consensus 151 ~~~~-------------~~~~~~~-------------------------------------------------------- 161 (396)
.... ...+++.
T Consensus 172 ~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~ 251 (530)
T 2ooe_A 172 NKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQT 251 (530)
T ss_dssp HHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSH
T ss_pred HHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcch
Confidence 1100 0111222
Q ss_pred ----HHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHhcCCCCchhhHHHHHHH
Q 016027 162 ----RAIRLVKEMRKEGIEPNAIVYNTVIDGLVE-------AGRFE-------EVSGMMERFLVCEPGPTMVTYTSLVKG 223 (396)
Q Consensus 162 ----~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~ 223 (396)
++..+|++.+... +.++..|..++..+.+ .|+++ +|..++++..+.-.+.+...|..++..
T Consensus 252 ~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~ 330 (530)
T 2ooe_A 252 LITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADY 330 (530)
T ss_dssp HHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 3344455444431 3345566666666554 57765 788888888762122357778888888
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH-HHhcCCHH
Q 016027 224 YCKAGDLEGASKILKMMISRGFLPSP-TTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKI-LCKEDKLD 301 (396)
Q Consensus 224 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~ 301 (396)
+.+.|++++|..+|+.+.+.... +. ..|..++..+.+.|++++|..+|++..+... .+...+...+.. +...|+.+
T Consensus 331 ~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~-~~~~~~~~~a~~~~~~~~~~~ 408 (530)
T 2ooe_A 331 EESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKS 408 (530)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT-CCTHHHHHHHHHHHHHTCCHH
T ss_pred HHhcCCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC-CchHHHHHHHHHHHHHcCChh
Confidence 88888888888888888875321 22 4677777777778888888888888877532 223333322222 33578888
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHHcCCchHHHHHHH
Q 016027 302 LAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRG-LVPH--YLTFKRLNDEFKKRGMTALAQKLCN 378 (396)
Q Consensus 302 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~ 378 (396)
+|..+|++..+..+. ++..|..++..+.+.|+.++|..+|++.+..+ ..|+ ...|...+......|+.+.+.++.+
T Consensus 409 ~A~~~~e~al~~~p~-~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~ 487 (530)
T 2ooe_A 409 VAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 487 (530)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCC-CHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 888888888776432 67788888888888888888888888888753 2222 3467777777777888888888888
Q ss_pred HHhccc
Q 016027 379 VMSSVP 384 (396)
Q Consensus 379 ~~~~~~ 384 (396)
++.+.-
T Consensus 488 r~~~~~ 493 (530)
T 2ooe_A 488 RRFTAF 493 (530)
T ss_dssp HHHHHT
T ss_pred HHHHHC
Confidence 765543
No 23
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.90 E-value=4.5e-22 Score=171.16 Aligned_cols=234 Identities=12% Similarity=-0.017 Sum_probs=137.4
Q ss_pred chhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHH
Q 016027 71 GASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTL 150 (396)
Q Consensus 71 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 150 (396)
+...+..++..+.+.|++++|.++|+++...+|. +..+|..+..++...|++++|+..|+++.+..+ .+..++..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l 139 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPG---DAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMAL 139 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHH
Confidence 4455778888888888888888888888876544 677888888888888888888888888877642 357778888
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCC-H----------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-chhhHH
Q 016027 151 VEGYCRLRRVDRAIRLVKEMRKEGIEPN-A----------IVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGP-TMVTYT 218 (396)
Q Consensus 151 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~----------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~ 218 (396)
..++...|++++|+..++++.+.. |+ . ..+..+...+...|++++|...++++.+..+.. +..++.
T Consensus 140 ~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 217 (365)
T 4eqf_A 140 AVSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQT 217 (365)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHH
T ss_pred HHHHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHH
Confidence 888888888888888888877652 21 1 112223445555555666666666555543321 344555
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 016027 219 SLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKED 298 (396)
Q Consensus 219 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 298 (396)
.+...+...|++++|...++++.+.. +.+..++..+..++...|++++|...|+++.+.. +.+..++..+..+|...|
T Consensus 218 ~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 295 (365)
T 4eqf_A 218 GLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLG 295 (365)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCC
Confidence 55555555555555555555555442 2234445555555555555555555555544432 112344444444444444
Q ss_pred CHHHHHHHHHHHHH
Q 016027 299 KLDLAIQVSKEMKC 312 (396)
Q Consensus 299 ~~~~a~~~~~~~~~ 312 (396)
++++|...++++.+
T Consensus 296 ~~~~A~~~~~~al~ 309 (365)
T 4eqf_A 296 AYREAVSNFLTALS 309 (365)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 44444444444443
No 24
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.90 E-value=2.8e-21 Score=163.51 Aligned_cols=264 Identities=9% Similarity=-0.012 Sum_probs=177.7
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHH
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVY 112 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 112 (396)
...+..++..+...|++++|+.+|+++.+.. |.+..++..++..+...|++++|.+.|+++...+|. +..++
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~ 92 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAA-----PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK---DIAVH 92 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC---CHHHH
Confidence 4578899999999999999999999999874 778889999999999999999999999999887544 67889
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHH--------------HH-HHHccCCHHHHHHHHHHHHHcCCCC
Q 016027 113 NILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTL--------------VE-GYCRLRRVDRAIRLVKEMRKEGIEP 177 (396)
Q Consensus 113 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~~ 177 (396)
..+...+...|++++|...++++.+.... +...+..+ .. .+...|++++|.+.++++.+.. +.
T Consensus 93 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~ 170 (327)
T 3cv0_A 93 AALAVSHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PN 170 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CC
Confidence 99999999999999999999999886432 33333333 22 2555666666666666666653 33
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 016027 178 NAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFR 257 (396)
Q Consensus 178 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 257 (396)
+...+..+..++...|++++|...++++.+..+ .+..++..+...+...|++++|...++++.+.. +.+..++..+..
T Consensus 171 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 248 (327)
T 3cv0_A 171 DAQLHASLGVLYNLSNNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAV 248 (327)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHH
Confidence 555666666666666666666666666665533 245556666666666666666666666665543 224455555555
Q ss_pred HHhccCCHHHHHHHHHHHHHCCCCC-----------ChhhHHHHHHHHHhcCCHHHHHHHHH
Q 016027 258 YFSKFGKVEDAMNLYRKMIESGYTP-----------DRLTYHILLKILCKEDKLDLAIQVSK 308 (396)
Q Consensus 258 ~~~~~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~a~~~~~ 308 (396)
.+...|++++|...++++.+..... +...+..+..++...|+.++|..+++
T Consensus 249 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 249 SYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred HHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 5666666666666665555432111 23444555555555555555555544
No 25
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.90 E-value=1.8e-18 Score=154.51 Aligned_cols=319 Identities=12% Similarity=0.041 Sum_probs=275.4
Q ss_pred hhHHHHHHHHHHH----cCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHH----cCChHHHHHHHHHHhhccCC
Q 016027 33 KDTFVILIRRYAR----AGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCK----QGRVKAASEYFHKRKELDQS 104 (396)
Q Consensus 33 ~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~ 104 (396)
..++..++..|.. .+++++|+..|+++.+. .++.++..|+..|.. .+++++|.++|+++... +
T Consensus 39 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~-------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~ 109 (490)
T 2xm6_A 39 AKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ-------GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--G 109 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--T
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC-------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--C
Confidence 6689999999999 89999999999999874 356788999999999 99999999999999875 3
Q ss_pred CCCChHHHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCC
Q 016027 105 WAPTVRVYNILLNGWFR----SKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCR----LRRVDRAIRLVKEMRKEGIE 176 (396)
Q Consensus 105 ~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~ 176 (396)
+...+..|...|.. .+++++|...|++..+.| +...+..+...|.. .+++++|+++|++..+.|
T Consensus 110 ---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~-- 181 (490)
T 2xm6_A 110 ---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG-- 181 (490)
T ss_dssp ---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--
T ss_pred ---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--
Confidence 67788889999988 889999999999998875 67788888888887 789999999999999875
Q ss_pred CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCC
Q 016027 177 PNAIVYNTVIDGLVE----AGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCK----AGDLEGASKILKMMISRGFLPS 248 (396)
Q Consensus 177 ~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~ 248 (396)
+...+..+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...|+...+.+ +
T Consensus 182 -~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~ 254 (490)
T 2xm6_A 182 -NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---N 254 (490)
T ss_dssp -CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---C
T ss_pred -CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence 67788888888988 899999999999998854 45677788888876 789999999999998864 5
Q ss_pred hhhHHHHHHHHhc----cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCCh
Q 016027 249 PTTYNYFFRYFSK----FGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKE-----DKLDLAIQVSKEMKCRGCDIDL 319 (396)
Q Consensus 249 ~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~ 319 (396)
...+..+...+.. .+++++|..+|++..+.+ +...+..+...|... +++++|...+++..+.+ +.
T Consensus 255 ~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~ 328 (490)
T 2xm6_A 255 SIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DA 328 (490)
T ss_dssp HHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CH
T ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CH
Confidence 5677778888877 899999999999998764 556777788888887 89999999999999875 56
Q ss_pred hhHHHHHHHHHhcC---ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCchHHHHHHHHHhccc
Q 016027 320 DTSTMLIHLLCRMY---KFDEASAEFEDMIRRGLVPHYLTFKRLNDEFKK----RGMTALAQKLCNVMSSVP 384 (396)
Q Consensus 320 ~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 384 (396)
..+..+...|...| ++++|.+.|++..+.+ +...+..+...|.. .+++++|..++++..+.+
T Consensus 329 ~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~ 397 (490)
T 2xm6_A 329 TAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG 397 (490)
T ss_dssp HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC
Confidence 78888888888766 8899999999999864 56788899999988 899999999999977654
No 26
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.88 E-value=2.8e-20 Score=157.35 Aligned_cols=282 Identities=8% Similarity=-0.051 Sum_probs=184.7
Q ss_pred chhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHH
Q 016027 71 GASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTL 150 (396)
Q Consensus 71 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 150 (396)
+...+..++..+...|++++|..+|+++...+|. +...+..+..++...|++++|...|+++.+.. +.+..++..+
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 95 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPE---REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAAL 95 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHH
Confidence 3445677777788888888888888887776443 66677777777777888888888887777653 2256667777
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHH-HH-HHHhcC
Q 016027 151 VEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSL-VK-GYCKAG 228 (396)
Q Consensus 151 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~-~~~~~~ 228 (396)
...+...|++++|.+.++++.+.. +.+...+..+.... ++......+ .. .+...|
T Consensus 96 a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~ 152 (327)
T 3cv0_A 96 AVSHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQAD----------------------VDIDDLNVQSEDFFFAAPN 152 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTS-TTTTTC------------------------------------------CCTTSHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHH----------------------HHHHHHHHHHHhHHHHHcc
Confidence 777777777777777777776653 22222222220000 011111112 11 255666
Q ss_pred ChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 016027 229 DLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSK 308 (396)
Q Consensus 229 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 308 (396)
++++|...++++.+... .+..++..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++
T Consensus 153 ~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 230 (327)
T 3cv0_A 153 EYRECRTLLHAALEMNP-NDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYN 230 (327)
T ss_dssp HHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 77777777777766542 256667777777777777777777777776654 2356677777777778888888888888
Q ss_pred HHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHHcCCchHHHHHH
Q 016027 309 EMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVP-----------HYLTFKRLNDEFKKRGMTALAQKLC 377 (396)
Q Consensus 309 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-----------~~~~~~~l~~~~~~~g~~~~A~~~~ 377 (396)
++.+..+. +..++..+..++...|++++|.+.++++.+..... +..++..+..++.+.|++++|..++
T Consensus 231 ~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 309 (327)
T 3cv0_A 231 RALDINPG-YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTY 309 (327)
T ss_dssp HHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHT
T ss_pred HHHHcCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 87766433 56777778888888888888888888877643111 3567778888888888888888888
Q ss_pred HHHhc
Q 016027 378 NVMSS 382 (396)
Q Consensus 378 ~~~~~ 382 (396)
++...
T Consensus 310 ~~~l~ 314 (327)
T 3cv0_A 310 AQNVE 314 (327)
T ss_dssp TCCSH
T ss_pred HHHHH
Confidence 76443
No 27
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.87 E-value=3.1e-18 Score=154.53 Aligned_cols=340 Identities=11% Similarity=0.038 Sum_probs=249.5
Q ss_pred CCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCC
Q 016027 27 VPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWA 106 (396)
Q Consensus 27 ~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 106 (396)
.|. +..+|..++. +.+.|++++|..+|+++.... |.+..+|..++..+.+.|++++|..+|+++....
T Consensus 9 ~P~--~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-----P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~---- 76 (530)
T 2ooe_A 9 NPY--DLDAWSILIR-EAQNQPIDKARKTYERLVAQF-----PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV---- 76 (530)
T ss_dssp CTT--CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC----
T ss_pred CCC--CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC----
Confidence 454 4779999998 478999999999999999974 8899999999999999999999999999999763
Q ss_pred CChHHHHHHHHHH-HhcCChhHHHH----HHHHHHhC-CCCC-ChhHHHHHHHHHHc---------cCCHHHHHHHHHHH
Q 016027 107 PTVRVYNILLNGW-FRSKNVKDAER----FWLEMRKE-NVTP-NVVTYGTLVEGYCR---------LRRVDRAIRLVKEM 170 (396)
Q Consensus 107 ~~~~~~~~l~~~~-~~~~~~~~a~~----~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~ 170 (396)
|+...|...+... ...|+.+.|.+ +|+..... |..| +...|...+..... .|+++.|..+|++.
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence 5777888777543 34677777665 77776543 5443 45677777776654 68899999999998
Q ss_pred HHcCCCCCHHHHHHHHHHH-------------HHcCCH------------------------------------------
Q 016027 171 RKEGIEPNAIVYNTVIDGL-------------VEAGRF------------------------------------------ 195 (396)
Q Consensus 171 ~~~~~~~~~~~~~~l~~~~-------------~~~~~~------------------------------------------ 195 (396)
++.........|....... .+.+++
T Consensus 157 l~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~ 236 (530)
T 2ooe_A 157 CVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKY 236 (530)
T ss_dssp TTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHH
T ss_pred HhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHH
Confidence 8731111112222111100 001111
Q ss_pred ------------------HHHHHHHHHHHhcCCCCchhhHHHHHHHHHh-------cCChH-------HHHHHHHHHHHC
Q 016027 196 ------------------EEVSGMMERFLVCEPGPTMVTYTSLVKGYCK-------AGDLE-------GASKILKMMISR 243 (396)
Q Consensus 196 ------------------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~ 243 (396)
+.+..+|++++...+ .+...|..++..+.+ .|+++ +|..++++..+.
T Consensus 237 ~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p-~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~ 315 (530)
T 2ooe_A 237 IQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST 315 (530)
T ss_dssp HHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHcCCccCCcchhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH
Confidence 234455555555433 356677777777765 68877 899999999873
Q ss_pred CCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC-h-hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhh
Q 016027 244 GFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPD-R-LTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDT 321 (396)
Q Consensus 244 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 321 (396)
-.+.+...+..++..+...|++++|..+|+++.+. .|+ . ..|..++..+.+.|++++|..+|+++.+... .+...
T Consensus 316 ~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~-~~~~~ 392 (530)
T 2ooe_A 316 LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHV 392 (530)
T ss_dssp TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT-CCTHH
T ss_pred hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC-CchHH
Confidence 23446788899999999999999999999999986 343 2 4788888888899999999999999987632 23344
Q ss_pred HHHHHHH-HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcc
Q 016027 322 STMLIHL-LCRMYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFKKRGMTALAQKLCNVMSSV 383 (396)
Q Consensus 322 ~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 383 (396)
+...+.. +...|++++|..+|++.++.. +.+...|..++..+.+.|+.++|..+|++....
T Consensus 393 ~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~ 454 (530)
T 2ooe_A 393 YVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 454 (530)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhc
Confidence 4333322 346899999999999998853 346788999999999999999999999997664
No 28
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.87 E-value=4.8e-19 Score=146.43 Aligned_cols=254 Identities=12% Similarity=0.026 Sum_probs=145.4
Q ss_pred HHHHHcCCHHHHHHHHHHHhhcccccCCCCc-hhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHH
Q 016027 41 RRYARAGMVEAAIWTFEFANNLDMVKNFDSG-ASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGW 119 (396)
Q Consensus 41 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 119 (396)
+-....|++++|+..+++..... |.+ ......++++|...|+++.|+..++. ..+|+..++..+...+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~-----p~~~~e~~~~l~r~yi~~g~~~~al~~~~~------~~~~~~~a~~~la~~~ 75 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSS-----PERDVERDVFLYRAYLAQRKYGVVLDEIKP------SSAPELQAVRMFAEYL 75 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCS-----HHHHHHHHHHHHHHHHHTTCHHHHHHHSCT------TSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCC-----chhhHHHHHHHHHHHHHCCCHHHHHHHhcc------cCChhHHHHHHHHHHH
Confidence 34456677777777666554431 222 23445566677777777776665433 1234555666666666
Q ss_pred HhcCChhHHHHHHHHHHhCCCCC-ChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 016027 120 FRSKNVKDAERFWLEMRKENVTP-NVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEV 198 (396)
Q Consensus 120 ~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 198 (396)
...++.++|++.++++...+..| +...+..+...+...|++++|++.+++ +.+...+..++.++.+.|++++|
T Consensus 76 ~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A 149 (291)
T 3mkr_A 76 ASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLA 149 (291)
T ss_dssp HCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHH
T ss_pred cCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHH
Confidence 66677777777777766654333 344555556666677777777766655 34556666666666667777777
Q ss_pred HHHHHHHHhcCCCCch-hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 016027 199 SGMMERFLVCEPGPTM-VTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIE 277 (396)
Q Consensus 199 ~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 277 (396)
.+.++++.+..+.... ......+..+...|++++|..+|+++.+.. +.++..++.+..++...|++++|...|+++.+
T Consensus 150 ~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~ 228 (291)
T 3mkr_A 150 RKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALD 228 (291)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7777666665322100 001112223333456666666666666552 33555666666666666666666666666655
Q ss_pred CCCCCChhhHHHHHHHHHhcCCHHH-HHHHHHHHHHc
Q 016027 278 SGYTPDRLTYHILLKILCKEDKLDL-AIQVSKEMKCR 313 (396)
Q Consensus 278 ~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~ 313 (396)
..+ -+..++..++..+...|+.++ +.++++++.+.
T Consensus 229 ~~p-~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 229 KDS-GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred hCC-CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 532 245556666666666666544 44566666555
No 29
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.86 E-value=5.4e-19 Score=146.09 Aligned_cols=278 Identities=12% Similarity=0.048 Sum_probs=214.9
Q ss_pred HHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccC
Q 016027 79 LDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLR 158 (396)
Q Consensus 79 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 158 (396)
++-....|++..|+..+++....+|. +.......+.++|...|+++.|+..++. . -+|+..++..+...+...+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~--~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPE--RDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHH--HHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCch--hhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCC
Confidence 45566789999999999887654221 1134556678899999999999987654 2 3567788889999999999
Q ss_pred CHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHH
Q 016027 159 RVDRAIRLVKEMRKEGIEP-NAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKIL 237 (396)
Q Consensus 159 ~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 237 (396)
+.++|++.++++...+..| +...+..+..++...|++++|++.+++ ..+...+..++..+.+.|++++|.+.+
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999998876444 566677777899999999999999987 357788999999999999999999999
Q ss_pred HHHHHCCCCCChhhH---HHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 016027 238 KMMISRGFLPSPTTY---NYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRG 314 (396)
Q Consensus 238 ~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 314 (396)
+.+.+.. |+.... ..++..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...++++.+..
T Consensus 154 ~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9998874 443211 223344556689999999999998874 4578889999999999999999999999999876
Q ss_pred CCCChhhHHHHHHHHHhcCChhH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCchHHHHHH
Q 016027 315 CDIDLDTSTMLIHLLCRMYKFDE-ASAEFEDMIRRGLVPHYLTFKRLNDEFKKRGMTALAQKLC 377 (396)
Q Consensus 315 ~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 377 (396)
+. ++.++..++..+...|+.++ +.++++++++.. |+... +.+...+.+.++++..-|
T Consensus 231 p~-~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~--P~~~~---~~d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 231 SG-HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH--RSHPF---IKEYRAKENDFDRLVLQY 288 (291)
T ss_dssp TT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCHH---HHHHHHHHHHHHHHHHHH
T ss_pred CC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--CCChH---HHHHHHHHHHHHHHHHHc
Confidence 54 78889999999999999876 578889988753 44332 223345555666655433
No 30
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.85 E-value=4.9e-20 Score=155.69 Aligned_cols=284 Identities=13% Similarity=0.141 Sum_probs=135.5
Q ss_pred hhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHc
Q 016027 6 AKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQ 85 (396)
Q Consensus 6 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 85 (396)
-+.|++++|.+.+++. . .| .+|..++.++.+.|++++|++.|.++ +++..|..++..+...
T Consensus 14 ~~~~~ld~A~~fae~~-~---~~-----~vWs~La~A~l~~g~~~eAIdsfika----------~D~~~y~~V~~~ae~~ 74 (449)
T 1b89_A 14 EHIGNLDRAYEFAERC-N---EP-----AVWSQLAKAQLQKGMVKEAIDSYIKA----------DDPSSYMEVVQAANTS 74 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhC-C---Ch-----HHHHHHHHHHHHcCCHHHHHHHHHcC----------CCHHHHHHHHHHHHhC
Confidence 3568899999887766 1 33 38999999999999999999999753 3556799999999999
Q ss_pred CChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHH
Q 016027 86 GRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIR 165 (396)
Q Consensus 86 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 165 (396)
|++++|.++++.+.+. .++..+.+.++.+|.+.|++.++.++++ .|+..+|..++..|...|.+++|..
T Consensus 75 g~~EeAi~yl~~ark~----~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~ 143 (449)
T 1b89_A 75 GNWEELVKYLQMARKK----ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKL 143 (449)
T ss_dssp --------------------------------------CHHHHTTTTT-------CC----------------CTTTHHH
T ss_pred CCHHHHHHHHHHHHHh----CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999988887763 3456788999999999999999988874 3677899999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 016027 166 LVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGF 245 (396)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 245 (396)
+|..+ ..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+.
T Consensus 144 ~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~---- 204 (449)
T 1b89_A 144 LYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV---- 204 (449)
T ss_dssp HHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT----
T ss_pred HHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH----
Confidence 99976 37899999999999999999999998 378899999999999999999966555422
Q ss_pred CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCC------C
Q 016027 246 LPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKC-RGCDI------D 318 (396)
Q Consensus 246 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~------~ 318 (396)
..+.-...++..|.+.|.+++|..+++...... +-....|+.+..+|++- ++++.++.++.... .+++| +
T Consensus 205 -~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~ 281 (449)
T 1b89_A 205 -VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQ 281 (449)
T ss_dssp -TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHT
T ss_pred -hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 344446678899999999999999999988765 44677888887777764 34444444443322 12222 5
Q ss_pred hhhHHHHHHHHHhcCChhHHHHH
Q 016027 319 LDTSTMLIHLLCRMYKFDEASAE 341 (396)
Q Consensus 319 ~~~~~~l~~~~~~~~~~~~a~~~ 341 (396)
...|..+.-.|...++++.|...
T Consensus 282 ~~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 282 AHLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp TTCHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhhchHHHHHHH
Confidence 67788999999999999988764
No 31
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.84 E-value=5.6e-19 Score=139.73 Aligned_cols=197 Identities=15% Similarity=0.068 Sum_probs=129.0
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHH
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVY 112 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 112 (396)
..++..++..+.+.|++++|+..|+++.+.. |.++.++..++.++...|++++|+..|+++.+.+|. +...+
T Consensus 5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~---~~~a~ 76 (217)
T 2pl2_A 5 EQNPLRLGVQLYALGRYDAALTLFERALKEN-----PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR---YLGGY 76 (217)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-----SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---cHHHH
Confidence 5688888888889999999999998888875 778888888888888899999999999888887654 67788
Q ss_pred HHHHHHHHhc-----------CChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHH
Q 016027 113 NILLNGWFRS-----------KNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIV 181 (396)
Q Consensus 113 ~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 181 (396)
..+..++... |++++|+..|++..+..+. +...+..+..++...|++++|+..|++.++.. .+...
T Consensus 77 ~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~ 153 (217)
T 2pl2_A 77 MVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEI 153 (217)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHH
T ss_pred HHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHH
Confidence 8888888777 6666666666666654322 45556666666666666666666666666654 45555
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 016027 182 YNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMI 241 (396)
Q Consensus 182 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 241 (396)
+..+..++...|++++|+..|+++.+..+. +...+..+..++...|++++|...+++..
T Consensus 154 ~~~la~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 154 RSALAELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 666666666666666666666666655432 44555556666666666666666655443
No 32
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.83 E-value=3.3e-19 Score=146.86 Aligned_cols=253 Identities=13% Similarity=0.043 Sum_probs=172.3
Q ss_pred hhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHH
Q 016027 4 VLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLC 83 (396)
Q Consensus 4 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 83 (396)
.+...|++++|+..|.++++.....++.+..++..++..+...|++++|+..|+++.... |.++.++..++..+.
T Consensus 14 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-----~~~~~~~~~la~~~~ 88 (275)
T 1xnf_A 14 PLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-----PDMPEVFNYLGIYLT 88 (275)
T ss_dssp CCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHH
T ss_pred ccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-----CCcHHHHHHHHHHHH
Confidence 345678899999999888875321111236688888999999999999999999888874 677888888999999
Q ss_pred HcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHH
Q 016027 84 KQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRA 163 (396)
Q Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 163 (396)
..|++++|.+.|+++...+|. +..++..+..++...|++++|...|+++.+.. |+.......+..+...|++++|
T Consensus 89 ~~~~~~~A~~~~~~al~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A 163 (275)
T 1xnf_A 89 QAGNFDAAYEAFDSVLELDPT---YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQA 163 (275)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT---CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHH
T ss_pred HccCHHHHHHHHHHHHhcCcc---ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHH
Confidence 999999999999988887544 57788888888888888888888888887753 3444444444555666888888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---chhhHHHHHHHHHhcCChHHHHHHHHHH
Q 016027 164 IRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGP---TMVTYTSLVKGYCKAGDLEGASKILKMM 240 (396)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 240 (396)
...++...... +++...+ .++..+...++.++|...+.+.....+.. +..++..+..++...|++++|...|+++
T Consensus 164 ~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 241 (275)
T 1xnf_A 164 KEVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLA 241 (275)
T ss_dssp HHHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88887776653 3333333 35566666777777777777775532211 1355666666777777777777777777
Q ss_pred HHCCCCCChhhHHHHHHHHhccCCHHHHHHHH
Q 016027 241 ISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLY 272 (396)
Q Consensus 241 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 272 (396)
.+.. |+. +.....++...|++++|++.+
T Consensus 242 l~~~--p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 242 VANN--VHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HTTC--CTT--CHHHHHHHHHHHHHHHC----
T ss_pred HhCC--chh--HHHHHHHHHHHHHHHhhHHHH
Confidence 6653 211 222233445556666655544
No 33
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.83 E-value=6e-18 Score=137.84 Aligned_cols=228 Identities=10% Similarity=0.065 Sum_probs=166.9
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCC----
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPT---- 108 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---- 108 (396)
..++..++..+...|++++|+..|+++.+.. .++.++..++.++...|++++|.+.++++....|...++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~------~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 78 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH------KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVI 78 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS------CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh------ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHH
Confidence 4578888889999999999999999888862 567788888899999999999999999888775543333
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 016027 109 VRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDG 188 (396)
Q Consensus 109 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 188 (396)
..++..+...+...|++++|...|+++.... |+. ..+...|++++|...++.+.... +.+...+..+...
T Consensus 79 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 148 (258)
T 3uq3_A 79 SKSFARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKE 148 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHH
Confidence 4677888888888888888888888887753 332 34555677778888887777653 3345566677777
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHH
Q 016027 189 LVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDA 268 (396)
Q Consensus 189 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 268 (396)
+...|++++|...++++.+..+. +..++..+..++...|++++|...++...+.. +.+..++..+..++...|++++|
T Consensus 149 ~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A 226 (258)
T 3uq3_A 149 YFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASA 226 (258)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHH
Confidence 77777777777777777776443 56667777777777777777777777776653 22566666677777777777777
Q ss_pred HHHHHHHHHC
Q 016027 269 MNLYRKMIES 278 (396)
Q Consensus 269 ~~~~~~~~~~ 278 (396)
...+++..+.
T Consensus 227 ~~~~~~a~~~ 236 (258)
T 3uq3_A 227 LETLDAARTK 236 (258)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 7777666554
No 34
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.83 E-value=8.9e-20 Score=154.14 Aligned_cols=285 Identities=13% Similarity=0.070 Sum_probs=138.4
Q ss_pred HHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcC
Q 016027 44 ARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSK 123 (396)
Q Consensus 44 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 123 (396)
-+.|++++|.++++++.. +.+|..++.++.+.|++++|++.|.+. +|...|..++..+...|
T Consensus 14 ~~~~~ld~A~~fae~~~~----------~~vWs~La~A~l~~g~~~eAIdsfika--------~D~~~y~~V~~~ae~~g 75 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNE----------PAVWSQLAKAQLQKGMVKEAIDSYIKA--------DDPSSYMEVVQAANTSG 75 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCC----------hHHHHHHHHHHHHcCCHHHHHHHHHcC--------CCHHHHHHHHHHHHhCC
Confidence 367889999999998722 248999999999999999999999663 36778999999999999
Q ss_pred ChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 016027 124 NVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMME 203 (396)
Q Consensus 124 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 203 (396)
++++|+..++..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..++..|...|.+++|...|.
T Consensus 76 ~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~ 146 (449)
T 1b89_A 76 NWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYN 146 (449)
T ss_dssp -----------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHH
T ss_pred CHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999988877664 4467888999999999999999988884 4677899999999999999999999999
Q ss_pred HHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC
Q 016027 204 RFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPD 283 (396)
Q Consensus 204 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 283 (396)
.+ ..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|...... +..+
T Consensus 147 ~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ 206 (449)
T 1b89_A 147 NV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVH 206 (449)
T ss_dssp HT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTC
T ss_pred Hh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhC
Confidence 76 37999999999999999999999988 2788999999999999999999665543 2234
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH-CCCCC------CHHH
Q 016027 284 RLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIR-RGLVP------HYLT 356 (396)
Q Consensus 284 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~p------~~~~ 356 (396)
+.....++..|.+.|.+++|..+++...... +-....|+.+..+|++- ++++.++.++.... .+++| +...
T Consensus 207 ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~ 284 (449)
T 1b89_A 207 ADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHL 284 (449)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTC
T ss_pred HhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 4445678899999999999999999998765 44678888888888774 45555555444332 22222 3567
Q ss_pred HHHHHHHHHHcCCchHHHHHH
Q 016027 357 FKRLNDEFKKRGMTALAQKLC 377 (396)
Q Consensus 357 ~~~l~~~~~~~g~~~~A~~~~ 377 (396)
|..++..|.+.++++.|...+
T Consensus 285 w~e~~~ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 285 WAELVFLYDKYEEYDNAIITM 305 (449)
T ss_dssp HHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhhchHHHHHHHH
Confidence 999999999999999988744
No 35
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.83 E-value=3e-18 Score=135.51 Aligned_cols=200 Identities=16% Similarity=0.058 Sum_probs=142.3
Q ss_pred CCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHH
Q 016027 69 DSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYG 148 (396)
Q Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 148 (396)
|+++.++..++..+...|++++|...|+++.+.+|. +...+..+..++.+.|++++|+..|++..+..+. +...+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~ 77 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ---DPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYM 77 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHH
Confidence 677888899999999999999999999999887655 7888899999999999999999999998887533 677888
Q ss_pred HHHHHHHcc-----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhH
Q 016027 149 TLVEGYCRL-----------RRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTY 217 (396)
Q Consensus 149 ~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 217 (396)
.+..++... |++++|+..+++.++.. +.+...+..+..++...|++++|+..|+++.+.. .+...+
T Consensus 78 ~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~ 154 (217)
T 2pl2_A 78 VLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIR 154 (217)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHH
T ss_pred HHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHH
Confidence 888888888 77777777777777663 3456666777777777777777777777777765 466677
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHH
Q 016027 218 TSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMI 276 (396)
Q Consensus 218 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 276 (396)
..+..++...|++++|...|+...+..+ .+...+..+..++...|++++|...+++..
T Consensus 155 ~~la~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 155 SALAELYLSMGRLDEALAQYAKALEQAP-KDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 7777777777777777777777776542 256666677777777777777777766543
No 36
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.82 E-value=2.9e-16 Score=139.75 Aligned_cols=311 Identities=13% Similarity=-0.017 Sum_probs=226.8
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhccc----ccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCC---
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDM----VKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSW--- 105 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--- 105 (396)
...|+.++.++...|++++|++.|+++.+... ....+....+|..++.+|...|++++|...++++....+..
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 56889999999999999999999999876421 11235556789999999999999999999999887653211
Q ss_pred --CCChHHHHHHHHHHHhc--CChhHHHHHHHHHHhCCCCCChhHHHHHHHHH---HccCCHHHHHHHHHHHHHcCCCCC
Q 016027 106 --APTVRVYNILLNGWFRS--KNVKDAERFWLEMRKENVTPNVVTYGTLVEGY---CRLRRVDRAIRLVKEMRKEGIEPN 178 (396)
Q Consensus 106 --~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~~ 178 (396)
.....++..+..++... +++++|+..|++..+..+. +...+..+..++ ...++.++|++.+++.++.. +.+
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~ 208 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDN 208 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSC
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Ccc
Confidence 12356676666666554 5799999999999886433 555665555553 34567788999999988874 445
Q ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHH
Q 016027 179 AIVYNTVIDGLVE----AGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNY 254 (396)
Q Consensus 179 ~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 254 (396)
..++..+...+.. .|++++|.+.+++.....+ .+..++..+...|...|++++|...+++..+..+. +..++..
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~ 286 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHCQ 286 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHHH
Confidence 6666666655554 4678899999999988765 46788899999999999999999999999987433 6667776
Q ss_pred HHHHHhcc-------------------CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 016027 255 FFRYFSKF-------------------GKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGC 315 (396)
Q Consensus 255 l~~~~~~~-------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 315 (396)
+..+|... +.++.|...+++..+.+. .+...+..+...+...|++++|...|+++.+..+
T Consensus 287 lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~ 365 (472)
T 4g1t_A 287 IGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAND-NLFRVCSILASLHALADQYEEAEYYFQKEFSKEL 365 (472)
T ss_dssp HHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCT-TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCC-chhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCC
Confidence 66655322 235667777877777643 3566788888899999999999999999887654
Q ss_pred CCCh--hhHHHHHH-HHHhcCChhHHHHHHHHHHHC
Q 016027 316 DIDL--DTSTMLIH-LLCRMYKFDEASAEFEDMIRR 348 (396)
Q Consensus 316 ~~~~--~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~ 348 (396)
.+.. ..+..+.. .....|++++|+..|++.++.
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i 401 (472)
T 4g1t_A 366 TPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI 401 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS
T ss_pred CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 3222 12233332 234678899999999998875
No 37
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.82 E-value=1.1e-17 Score=137.53 Aligned_cols=239 Identities=8% Similarity=0.033 Sum_probs=170.1
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHH
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVY 112 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 112 (396)
...+...+..+...|++++|+..|+++.+.. |.+..++..++.++...|++++|++.++++....+........|
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-----p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 77 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-----YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADF 77 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-----CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHH
Confidence 3467788888889999999999999888864 66777888888899999999999999998887422222224457
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 016027 113 NILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEA 192 (396)
Q Consensus 113 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 192 (396)
..+...+...|++++|+..|++..+.... +..++..+...+...|++++|+..+++..+.. +.+...+..+...+...
T Consensus 78 ~~lg~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~ 155 (272)
T 3u4t_A 78 EYYGKILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYN 155 (272)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHH
Confidence 88888888888888888888888876433 56778888888888888888888888877663 44556666666344445
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCC---hHHHHHHHHHHHHCC-CCCC------hhhHHHHHHHHhcc
Q 016027 193 GRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGD---LEGASKILKMMISRG-FLPS------PTTYNYFFRYFSKF 262 (396)
Q Consensus 193 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~ 262 (396)
+++++|...++++.+..+. +...+..+..++...|+ +++|...+++..+.. ..|+ ..++..+...|...
T Consensus 156 ~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 234 (272)
T 3u4t_A 156 KEYVKADSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTIN 234 (272)
T ss_dssp TCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHc
Confidence 5888888888888776543 45666667777777776 777777777766541 1122 13555566666666
Q ss_pred CCHHHHHHHHHHHHHCC
Q 016027 263 GKVEDAMNLYRKMIESG 279 (396)
Q Consensus 263 ~~~~~a~~~~~~~~~~~ 279 (396)
|++++|...++++.+..
T Consensus 235 ~~~~~A~~~~~~al~~~ 251 (272)
T 3u4t_A 235 RDKVKADAAWKNILALD 251 (272)
T ss_dssp TCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHhcC
Confidence 77777777776666653
No 38
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.82 E-value=1.4e-17 Score=142.17 Aligned_cols=248 Identities=13% Similarity=0.087 Sum_probs=196.1
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCC-hHHHHHHHHHHhhccCCCCCChHH
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGR-VKAASEYFHKRKELDQSWAPTVRV 111 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~ 111 (396)
..+|..++.++...|++++|+..|++++... |.+..+|+.++.++...|+ +++|+..|+++...+|. +...
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-----P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~---~~~a 168 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-----AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK---NYQV 168 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT---CHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-----ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC---CHHH
Confidence 5688889999999999999999999999885 8888899999999999996 99999999999988665 7888
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 016027 112 YNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVE 191 (396)
Q Consensus 112 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 191 (396)
|+.+..++...|++++|+..|+++++.... +..+|..+..++...|++++|+..++++++.. +-+...|+.+..++..
T Consensus 169 ~~~~g~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~ 246 (382)
T 2h6f_A 169 WHHRRVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISN 246 (382)
T ss_dssp HHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 999999999999999999999999887544 78888999999999999999999999998875 4577888888888888
Q ss_pred -cCCHHHH-----HHHHHHHHhcCCCCchhhHHHHHHHHHhcC--ChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccC
Q 016027 192 -AGRFEEV-----SGMMERFLVCEPGPTMVTYTSLVKGYCKAG--DLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFG 263 (396)
Q Consensus 192 -~~~~~~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 263 (396)
.|..++| +..+++.+...+. +...|..+..++...| ++++|.+.+..+ +. .+.+...+..++.+|...|
T Consensus 247 l~~~~~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~ 323 (382)
T 2h6f_A 247 TTGYNDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDML 323 (382)
T ss_dssp TTCSCSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHH
T ss_pred hcCcchHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHh
Confidence 5554676 4788888876553 6678888888888877 578888888877 43 2346677777888877763
Q ss_pred ---------CHHHHHHHHHHH-HHCCCCCChhhHHHHHHHH
Q 016027 264 ---------KVEDAMNLYRKM-IESGYTPDRLTYHILLKIL 294 (396)
Q Consensus 264 ---------~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~ 294 (396)
..++|..+|+++ .+.+ +.....|..+...+
T Consensus 324 ~~~~~~~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l 363 (382)
T 2h6f_A 324 ENQCDNKEDILNKALELCEILAKEKD-TIRKEYWRYIGRSL 363 (382)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHH
Confidence 247888888887 5543 12334454444443
No 39
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.82 E-value=4.2e-18 Score=149.95 Aligned_cols=346 Identities=13% Similarity=0.020 Sum_probs=205.6
Q ss_pred hhhhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCH---HHHHHHHHHHhhcccccCCCCchhHHHHH
Q 016027 2 IKVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMV---EAAIWTFEFANNLDMVKNFDSGASLFEIL 78 (396)
Q Consensus 2 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~~~~~l 78 (396)
...+.+.|++++|+++|.++.+.+ . ..++..++..+...|+. ++|+..|+++.+. ++..+..+
T Consensus 10 a~~~~~~g~~~~A~~~~~~aa~~g-~-----~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~--------~~~A~~~L 75 (452)
T 3e4b_A 10 ANEALKRGDTVTAQQNYQQLAELG-Y-----SEAQVGLADIQVGTRDPAQIKQAEATYRAAADT--------SPRAQARL 75 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT-C-----CTGGGTCC------------------------------------CHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHCC-C-----HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC--------CHHHHHHH
Confidence 346678899999999999987642 2 33677888888888888 8999999988752 45667788
Q ss_pred HHHHHHcC-----ChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChh---HHHHHHHHHHhCCCCCChhHHHHH
Q 016027 79 LDSLCKQG-----RVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVK---DAERFWLEMRKENVTPNVVTYGTL 150 (396)
Q Consensus 79 ~~~~~~~~-----~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l 150 (396)
+..+...+ ++++|.++|+++... + +...+..|...|...+... ++.+.+......| +......+
T Consensus 76 g~~~~~~~~~~~~~~~~A~~~~~~Aa~~--g---~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~L 147 (452)
T 3e4b_A 76 GRLLAAKPGATEAEHHEAESLLKKAFAN--G---EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQ 147 (452)
T ss_dssp HHHHHTC--CCHHHHHHHHHHHHHHHHT--T---CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHH
T ss_pred HHHHHhCCCCCCcCHHHHHHHHHHHHHC--C---CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHH
Confidence 88666655 788999999998874 3 2336666777776655433 3444455444443 34556666
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhc
Q 016027 151 VEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAG---RFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKA 227 (396)
Q Consensus 151 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 227 (396)
...|...+.++++......+.+.-...++..+..+..+|...| +.++|+..|++..+.|+ ++...+..+...|...
T Consensus 148 g~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g 226 (452)
T 3e4b_A 148 VLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDA 226 (452)
T ss_dssp HHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCG
T ss_pred HHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCC
Confidence 6667666644443333222222211223336667777777777 77778888888777665 3445445566666544
Q ss_pred ----CChHHHHHHHHHHHHCCCCCChhhHHHHHHH-H--hccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC--
Q 016027 228 ----GDLEGASKILKMMISRGFLPSPTTYNYFFRY-F--SKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKED-- 298 (396)
Q Consensus 228 ----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-- 298 (396)
+++++|...|+... . -++..+..+... + ...+++++|..+|++..+.| +...+..+...|. .|
T Consensus 227 ~~~~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g 298 (452)
T 3e4b_A 227 TLGTPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKW 298 (452)
T ss_dssp GGSSCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSS
T ss_pred CCCCCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCC
Confidence 57778888887776 3 245556666665 3 45777888888888777765 5566666666665 44
Q ss_pred ---CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----c
Q 016027 299 ---KLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCR----MYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFKK----R 367 (396)
Q Consensus 299 ---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~ 367 (396)
++++|..+|++.. .| ++.....|...|.. ..++++|...|++..+.|. | .....|...|.. .
T Consensus 299 ~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~-~--~A~~~Lg~~y~~G~g~~ 371 (452)
T 3e4b_A 299 VPADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ-N--SADFAIAQLFSQGKGTK 371 (452)
T ss_dssp SCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC-T--THHHHHHHHHHSCTTBC
T ss_pred CCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh-H--HHHHHHHHHHHhCCCCC
Confidence 7788888887776 32 56667777766665 3377788888887777653 2 244455555543 3
Q ss_pred CCchHHHHHHHHHhccch
Q 016027 368 GMTALAQKLCNVMSSVPR 385 (396)
Q Consensus 368 g~~~~A~~~~~~~~~~~~ 385 (396)
.+.++|..++++..+.+.
T Consensus 372 ~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 372 PDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp CCHHHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHHCCC
Confidence 467777777777655443
No 40
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.81 E-value=2.2e-17 Score=134.54 Aligned_cols=225 Identities=10% Similarity=0.048 Sum_probs=127.1
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCC--CCC----HHHH
Q 016027 109 VRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGI--EPN----AIVY 182 (396)
Q Consensus 109 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~ 182 (396)
...+..+...+...|++++|+..|+++.+.. .+..++..+..++...|++++|+..++++.+... .++ ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4556666677777777777777777766655 4666666677777777777777777766665421 111 3555
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhcc
Q 016027 183 NTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKF 262 (396)
Q Consensus 183 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 262 (396)
..+..++...|++++|...++++.... |+. ..+...|++++|...++.+.... +.+...+..+...+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHh
Confidence 666666666666666666666666532 222 23444455566666666655542 22344455555555555
Q ss_pred CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 016027 263 GKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEF 342 (396)
Q Consensus 263 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 342 (396)
|++++|...++++.+... .+..++..+..++...|++++|...++++.+..+. +...+..+..++...|++++|...+
T Consensus 153 ~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp TCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 555555555555555432 23445555555555555555555555555544322 3445555555555555555555555
Q ss_pred HHHHH
Q 016027 343 EDMIR 347 (396)
Q Consensus 343 ~~~~~ 347 (396)
++..+
T Consensus 231 ~~a~~ 235 (258)
T 3uq3_A 231 DAART 235 (258)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
No 41
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.81 E-value=9.2e-16 Score=144.82 Aligned_cols=317 Identities=14% Similarity=0.068 Sum_probs=187.2
Q ss_pred hhhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHH
Q 016027 3 KVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSL 82 (396)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 82 (396)
+.|...|.+.+|++++++++-.+ .+-.-....-+.++.+..+. +..+..++.++.... ....++..+
T Consensus 993 Kaf~~aglp~EaieLLEKivl~~-s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~-----------d~~eIA~Ia 1059 (1630)
T 1xi4_A 993 KAFMTADLPNELIELLEKIVLDN-SVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY-----------DAPDIANIA 1059 (1630)
T ss_pred HHHHhCCCHHHHHHHHHHHHcCC-CcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc-----------cHHHHHHHH
Confidence 45566677777777777666321 10000122333344433333 333333333333221 122356666
Q ss_pred HHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHH
Q 016027 83 CKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDR 162 (396)
Q Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 162 (396)
...|.+++|..+|++... .....+.++. ..+++++|.++.++.. +..+|..+..++...|++++
T Consensus 1060 i~lglyEEAf~IYkKa~~-------~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kE 1123 (1630)
T 1xi4_A 1060 ISNELFEEAFAIFRKFDV-------NTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKE 1123 (1630)
T ss_pred HhCCCHHHHHHHHHHcCC-------HHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHH
Confidence 667777777777776531 1222233322 5566777777766441 46667777777777777777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 016027 163 AIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMIS 242 (396)
Q Consensus 163 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 242 (396)
|++.|.+. .|...|..++.++.+.|++++|++++....+... +....+.++.+|++.+++++.... .+
T Consensus 1124 AIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~--e~~Idt~LafaYAKl~rleele~f----I~ 1191 (1630)
T 1xi4_A 1124 AIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAKTNRLAELEEF----IN 1191 (1630)
T ss_pred HHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc--cccccHHHHHHHHhhcCHHHHHHH----Hh
Confidence 77777443 3566667777777777777777777777666432 322333477777777776643333 21
Q ss_pred CCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhH
Q 016027 243 RGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTS 322 (396)
Q Consensus 243 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 322 (396)
.++...+..+...|...|++++|..+|..+ ..|..++.++.+.|++++|.+.+++.. +..+|
T Consensus 1192 ---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------n~~aW 1253 (1630)
T 1xi4_A 1192 ---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------STRTW 1253 (1630)
T ss_pred ---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHHHH
Confidence 234455666777777777777777777663 366777777777777777777777662 55666
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcc
Q 016027 323 TMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFKKRGMTALAQKLCNVMSSV 383 (396)
Q Consensus 323 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 383 (396)
..+..+|...|++..|...... +..++..+..++..|.+.|.+++|+.+++.....
T Consensus 1254 kev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~L 1309 (1630)
T 1xi4_A 1254 KEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGL 1309 (1630)
T ss_pred HHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 6666666666666666665442 2234445666777777777777777777665443
No 42
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.80 E-value=3.1e-17 Score=140.11 Aligned_cols=251 Identities=12% Similarity=0.097 Sum_probs=187.3
Q ss_pred CCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCC-hhHHHHHHHHHHhCCCCCChhHH
Q 016027 69 DSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKN-VKDAERFWLEMRKENVTPNVVTY 147 (396)
Q Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~ 147 (396)
|.+..+|..+...+...|++++|++.|+++...+|. +..+|+.+..++...|+ +++|+..|+++++.... +...|
T Consensus 94 p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~---~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~ 169 (382)
T 2h6f_A 94 DKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAA---NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVW 169 (382)
T ss_dssp HHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred hhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc---CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHH
Confidence 334677888888888899999999999999888665 77888888888888886 99999999998887544 77888
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHh-
Q 016027 148 GTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCK- 226 (396)
Q Consensus 148 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 226 (396)
..+..++...|++++|+..|+++++.. +-+...|..+..++...|++++|+..++++++..+. +...|+.+..++..
T Consensus 170 ~~~g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l 247 (382)
T 2h6f_A 170 HHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNT 247 (382)
T ss_dssp HHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHh
Confidence 888888888899999999998888875 557778888888888888888899888888887663 67788888888888
Q ss_pred cCChHHH-----HHHHHHHHHCCCCCChhhHHHHHHHHhccC--CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC-
Q 016027 227 AGDLEGA-----SKILKMMISRGFLPSPTTYNYFFRYFSKFG--KVEDAMNLYRKMIESGYTPDRLTYHILLKILCKED- 298 (396)
Q Consensus 227 ~~~~~~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~- 298 (396)
.|..++| +..+++.++.... +...|..+..++...| ++++|++.+.++ +.. +.+...+..++.+|.+.|
T Consensus 248 ~~~~~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~ 324 (382)
T 2h6f_A 248 TGYNDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLE 324 (382)
T ss_dssp TCSCSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHH
T ss_pred cCcchHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhc
Confidence 5554666 4777777776433 5667777777777766 577777777776 332 335566677777777653
Q ss_pred --------CHHHHHHHHHHH-HHcCCCCChhhHHHHHHHH
Q 016027 299 --------KLDLAIQVSKEM-KCRGCDIDLDTSTMLIHLL 329 (396)
Q Consensus 299 --------~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~ 329 (396)
..++|..+++++ .+..+ .....|..+...+
T Consensus 325 ~~~~~~~~~~~~A~~~~~~l~~~~DP-~r~~~w~~~~~~l 363 (382)
T 2h6f_A 325 NQCDNKEDILNKALELCEILAKEKDT-IRKEYWRYIGRSL 363 (382)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHHTTCG-GGHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHHHHhCc-hhHHHHHHHHHHH
Confidence 247777777777 54422 1334454444443
No 43
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.80 E-value=8.9e-16 Score=144.90 Aligned_cols=314 Identities=13% Similarity=0.075 Sum_probs=242.9
Q ss_pred hhhhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHH
Q 016027 2 IKVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDS 81 (396)
Q Consensus 2 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 81 (396)
...+...|++++|..+|++.-. + ..+...+ +...|++++|.++.+++. ++.+|..++.+
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~~----~----~~A~~VL---ie~i~nldrAiE~Aervn----------~p~vWsqLAKA 1114 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFDV----N----TSAVQVL---IEHIGNLDRAYEFAERCN----------EPAVWSQLAKA 1114 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcCC----H----HHHHHHH---HHHHhhHHHHHHHHHhcC----------CHHHHHHHHHH
Confidence 3457788999999999988531 1 2223333 237889999999988552 35789999999
Q ss_pred HHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHH
Q 016027 82 LCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVD 161 (396)
Q Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 161 (396)
+...|++++|++.|.++ .|...|..++.++.+.|++++|.+.|...++.. ++....+.++.+|++.++++
T Consensus 1115 ql~~G~~kEAIdsYiKA--------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rle 1184 (1630)
T 1xi4_A 1115 QLQKGMVKEAIDSYIKA--------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLA 1184 (1630)
T ss_pred HHhCCCHHHHHHHHHhc--------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHH
Confidence 99999999999999775 277889999999999999999999999887764 33333345889999999888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 016027 162 RAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMI 241 (396)
Q Consensus 162 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 241 (396)
+...+ ++ .++...+..+...|...|++++|..+|..+ ..|..++.++.+.|++++|.+.+.+.
T Consensus 1185 ele~f----I~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA- 1247 (1630)
T 1xi4_A 1185 ELEEF----IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA- 1247 (1630)
T ss_pred HHHHH----Hh---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh-
Confidence 64433 22 346667778999999999999999999985 37999999999999999999999876
Q ss_pred HCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhh
Q 016027 242 SRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDT 321 (396)
Q Consensus 242 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 321 (396)
.+..+|..+..+|...|++..|...... +..++..+..++..|.+.|.+++|+.+++...... +-....
T Consensus 1248 -----~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gm 1316 (1630)
T 1xi4_A 1248 -----NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGM 1316 (1630)
T ss_pred -----CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHH
Confidence 2668899999999999999998887654 23466777899999999999999999999988665 335667
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCC-CCC------CHHHHHHHHHHHHHcCCchHHHH
Q 016027 322 STMLIHLLCRMYKFDEASAEFEDMIRRG-LVP------HYLTFKRLNDEFKKRGMTALAQK 375 (396)
Q Consensus 322 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~p------~~~~~~~l~~~~~~~g~~~~A~~ 375 (396)
|+.+..+|.+. ++++.++.++...++. ++| +...|..++..|.+.|+++.|..
T Consensus 1317 ftELaiLyaKy-~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1317 FTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHHHHHhC-CHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 77777777763 3444444444333322 222 45679999999999999999984
No 44
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.80 E-value=4.7e-17 Score=133.72 Aligned_cols=236 Identities=12% Similarity=0.008 Sum_probs=144.8
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--hhHHHHH
Q 016027 73 SLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPN--VVTYGTL 150 (396)
Q Consensus 73 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l 150 (396)
..+...+..+...|++++|+..|+++.+.+|. +...+..+..++...|++++|+..++++.+.+..|+ ..+|..+
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYN---SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYY 80 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC---CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHH
Confidence 44566777777888888888888887776543 455677777777788888888888887776431111 2236677
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCh
Q 016027 151 VEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDL 230 (396)
Q Consensus 151 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 230 (396)
...+...|++++|++.+++..+.. +.+..++..+..++...|++++|+..+++..+..+ .+...+..+...+...+++
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~ 158 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTT-TDPKVFYELGQAYYYNKEY 158 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSC-CCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCC-CcHHHHHHHHHHHHHHHHH
Confidence 777777777777777777777653 34556667777777777777777777777766533 2455555555233334467
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCC---HHHHHHHHHHHHHCC-CCCC------hhhHHHHHHHHHhcCCH
Q 016027 231 EGASKILKMMISRGFLPSPTTYNYFFRYFSKFGK---VEDAMNLYRKMIESG-YTPD------RLTYHILLKILCKEDKL 300 (396)
Q Consensus 231 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~~~~ 300 (396)
++|...|+.+.+... .+...+..+..++...++ +++|...++++.+.. ..|+ ..++..+...|...|++
T Consensus 159 ~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 237 (272)
T 3u4t_A 159 VKADSSFVKVLELKP-NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDK 237 (272)
T ss_dssp HHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCH
Confidence 777777776666532 234555555555555555 555666665554431 0122 13444455555555666
Q ss_pred HHHHHHHHHHHHcC
Q 016027 301 DLAIQVSKEMKCRG 314 (396)
Q Consensus 301 ~~a~~~~~~~~~~~ 314 (396)
++|...++++.+..
T Consensus 238 ~~A~~~~~~al~~~ 251 (272)
T 3u4t_A 238 VKADAAWKNILALD 251 (272)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcC
Confidence 66666666655543
No 45
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.79 E-value=1.7e-16 Score=128.77 Aligned_cols=201 Identities=16% Similarity=0.097 Sum_probs=125.5
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHH
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVY 112 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 112 (396)
..++..++..+...|++++|++.|+++.... |.+..++..++..+...|++++|.+.++++....+. +...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-----~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~ 108 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-----PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR---NARVL 108 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-----CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC---cHHHH
Confidence 3456666777777777777777777766653 555666666777777777777777777776665432 55666
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCC-ChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 016027 113 NILLNGWFRSKNVKDAERFWLEMRKENVTP-NVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVE 191 (396)
Q Consensus 113 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 191 (396)
..+...+...|++++|.+.|+++...+..| +...+..+...+...|++++|.+.++++.+.. +.+...+..+..++..
T Consensus 109 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~ 187 (252)
T 2ho1_A 109 NNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYK 187 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHH
Confidence 666666667777777777776666522222 34455666666666666666666666666553 3345556666666666
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 016027 192 AGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISR 243 (396)
Q Consensus 192 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 243 (396)
.|++++|...++++.+..+ .+...+..+...+...|++++|...++.+.+.
T Consensus 188 ~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 188 EREYVPARQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp TTCHHHHHHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 6666666666666655433 34455555666666666666666666666554
No 46
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.79 E-value=8.2e-17 Score=141.72 Aligned_cols=345 Identities=12% Similarity=-0.002 Sum_probs=236.8
Q ss_pred hhhhhccCc---hhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcC-----CHHHHHHHHHHHhhcccccCCCCchhH
Q 016027 3 KVLAKAKEF---DSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAG-----MVEAAIWTFEFANNLDMVKNFDSGASL 74 (396)
Q Consensus 3 ~~~~~~g~~---~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~~ 74 (396)
..|...|+. ++|+..|.++.+. . ..++..++..+...| ++++|+..|+++...+ ++.+
T Consensus 43 ~~y~~~g~~~d~~~A~~~~~~A~~~--~-----~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g-------~~~A 108 (452)
T 3e4b_A 43 DIQVGTRDPAQIKQAEATYRAAADT--S-----PRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANG-------EGNT 108 (452)
T ss_dssp -----------------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTT-------CSSC
T ss_pred HHHHccCCCCCHHHHHHHHHHHHhC--C-----HHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCC-------CHHH
Confidence 345567777 9999999998864 3 447888888676666 8899999999998853 3347
Q ss_pred HHHHHHHHHHcCChHH---HHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHH
Q 016027 75 FEILLDSLCKQGRVKA---ASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLV 151 (396)
Q Consensus 75 ~~~l~~~~~~~~~~~~---A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 151 (396)
+..|+..|...+..++ +.+.+...... + +...+..+...|...+.++++......+.+.-...+...+..+.
T Consensus 109 ~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~--g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg 183 (452)
T 3e4b_A 109 LIPLAMLYLQYPHSFPNVNAQQQISQWQAA--G---YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELA 183 (452)
T ss_dssp HHHHHHHHHHCGGGCTTCCHHHHHHHHHHH--T---CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHC--C---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8889999988765444 55555555443 3 45677888888888886666555544333322223444888899
Q ss_pred HHHHccC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhcCCCCchhhHHHHHHH-
Q 016027 152 EGYCRLR---RVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEA----GRFEEVSGMMERFLVCEPGPTMVTYTSLVKG- 223 (396)
Q Consensus 152 ~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~- 223 (396)
..|...| +.++|++.|++..+.| +++...+..+..+|... +++++|+..|++.. . -+...+..+...
T Consensus 184 ~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~ 258 (452)
T 3e4b_A 184 TVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P---GYPASWVSLAQLL 258 (452)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G---GSTHHHHHHHHHH
T ss_pred HHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C---CCHHHHHHHHHHH
Confidence 9999999 9999999999999997 56666667777777655 79999999999987 2 355667777776
Q ss_pred H--HhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccC-----CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 016027 224 Y--CKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFG-----KVEDAMNLYRKMIESGYTPDRLTYHILLKILCK 296 (396)
Q Consensus 224 ~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 296 (396)
+ ...+++++|...|++..+.| ++..+..+...|. .| ++++|..+|++.. .| +......+...|..
T Consensus 259 ~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~ 330 (452)
T 3e4b_A 259 YDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADYYLGQIYRR 330 (452)
T ss_dssp HHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHT
T ss_pred HhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHC
Confidence 4 56899999999999999876 6677888888877 55 9999999999887 33 66777778877776
Q ss_pred ----cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 016027 297 ----EDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCR----MYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFKKRG 368 (396)
Q Consensus 297 ----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 368 (396)
..++++|..+|++..+.| ++.....|...|.. ..++.+|..+|+...+.|. ++.......+......+
T Consensus 331 G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~-~~a~~~l~~l~~~~~~~ 406 (452)
T 3e4b_A 331 GYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT-PEANDLATQLEAPLTPA 406 (452)
T ss_dssp TTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC-HHHHHHHHHHHTTCCHH
T ss_pred CCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhCCHH
Confidence 349999999999999876 45667777777764 4589999999999998873 33333333333333445
Q ss_pred CchHHHHHHHHHhcc
Q 016027 369 MTALAQKLCNVMSSV 383 (396)
Q Consensus 369 ~~~~A~~~~~~~~~~ 383 (396)
+.++|.++.++..+.
T Consensus 407 ~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 407 QRAEGQRLVQQELAA 421 (452)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 667788887775544
No 47
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.79 E-value=4.4e-16 Score=123.91 Aligned_cols=202 Identities=9% Similarity=-0.023 Sum_probs=150.1
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHH
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVY 112 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 112 (396)
..++..++..+...|++++|++.|+++.+.. |.+..++..++..+...|++++|.+.++++....|. +..++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~ 79 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-----PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD---SAEIN 79 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-----ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC---ChHHH
Confidence 5678888888888888888888888888764 666778888888888888888888888888776443 66777
Q ss_pred HHHHHHHHhc-CChhHHHHHHHHHHhCCCCC-ChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 016027 113 NILLNGWFRS-KNVKDAERFWLEMRKENVTP-NVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLV 190 (396)
Q Consensus 113 ~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 190 (396)
..++..+... |++++|...++++.+.+..| +...+..+..++...|++++|+..++++.+.. +.+...+..+..++.
T Consensus 80 ~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 158 (225)
T 2vq2_A 80 NNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKM 158 (225)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHH
Confidence 8888888888 88888888888887732222 35667777777788888888888888777763 345666777777777
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 016027 191 EAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISR 243 (396)
Q Consensus 191 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 243 (396)
..|++++|...++++.+..+..+...+..+...+...|+.+.|..+++.+.+.
T Consensus 159 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 159 LAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 77888888777777776544235556666666777777777777777777654
No 48
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.78 E-value=1.4e-15 Score=125.04 Aligned_cols=223 Identities=12% Similarity=0.012 Sum_probs=156.7
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHH----cCChHHHHHHHHHHhhccCCCCCC
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCK----QGRVKAASEYFHKRKELDQSWAPT 108 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~ 108 (396)
..++..++..+...|++++|++.|+++.+ +.++.++..++..|.. .+++++|.++|+++.+. + +
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~-------~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~---~ 73 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACD-------LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL--N---Y 73 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--T---C
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHH-------CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC--C---C
Confidence 55777888888888888888888887776 3345667778888888 88888888888887765 2 5
Q ss_pred hHHHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCCCCHH
Q 016027 109 VRVYNILLNGWFR----SKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCR----LRRVDRAIRLVKEMRKEGIEPNAI 180 (396)
Q Consensus 109 ~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~ 180 (396)
...+..+...+.. .+++++|+..|++..+.+ +..++..+...|.. .+++++|+..+++..+.+ +..
T Consensus 74 ~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~ 147 (273)
T 1ouv_A 74 SNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGD 147 (273)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred HHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHH
Confidence 6777777777777 788888888888777764 66677777777777 777777777777777764 455
Q ss_pred HHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCChhhH
Q 016027 181 VYNTVIDGLVE----AGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCK----AGDLEGASKILKMMISRGFLPSPTTY 252 (396)
Q Consensus 181 ~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 252 (396)
.+..+...+.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...++...+.+ +...+
T Consensus 148 a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~ 221 (273)
T 1ouv_A 148 GCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGC 221 (273)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHH
Confidence 56666666666 677777777777776642 34556666666666 677777777777766653 24455
Q ss_pred HHHHHHHhc----cCCHHHHHHHHHHHHHCC
Q 016027 253 NYFFRYFSK----FGKVEDAMNLYRKMIESG 279 (396)
Q Consensus 253 ~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 279 (396)
..+...|.. .+++++|...|++..+.+
T Consensus 222 ~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 222 FNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 566666666 666666666666666554
No 49
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.78 E-value=3.1e-17 Score=132.36 Aligned_cols=201 Identities=16% Similarity=0.101 Sum_probs=144.3
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHH
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVY 112 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 112 (396)
..+|..++..+...|++++|+..|+++.+.. |.+..++..++..+...|++++|.+.|+++....+. +...+
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-----~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~ 94 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-----KEDAIPYINFANLLSSVNELERALAFYDKALELDSS---AATAY 94 (243)
T ss_dssp -------------------CCTTHHHHHTTC-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-----cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc---chHHH
Confidence 5678888888999999999999999888864 677888888899999999999999999988876543 67788
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 016027 113 NILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEA 192 (396)
Q Consensus 113 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 192 (396)
..+...+...|++++|...++++.+... .+...+..+...+...|++++|...++++.+.. +.+...+..+..++...
T Consensus 95 ~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 172 (243)
T 2q7f_A 95 YGAGNVYVVKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANE 172 (243)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHc
Confidence 8888888888899999988888877643 367777888888888888888888888887763 44666777777888888
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 016027 193 GRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRG 244 (396)
Q Consensus 193 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 244 (396)
|++++|...++++.+..+ .+..++..+..++...|++++|...++++.+..
T Consensus 173 ~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 173 GMLDEALSQFAAVTEQDP-GHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp TCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 888888888888777644 356677777778888888888888888877753
No 50
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.78 E-value=1.8e-15 Score=124.38 Aligned_cols=225 Identities=15% Similarity=0.029 Sum_probs=138.2
Q ss_pred CCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCh
Q 016027 69 DSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFR----SKNVKDAERFWLEMRKENVTPNV 144 (396)
Q Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~ 144 (396)
|.++.++..++..+...|++++|.++|+++.+. + +...+..+...+.. .+++++|...|++..+.+ +.
T Consensus 3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~ 74 (273)
T 1ouv_A 3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACDL--K---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YS 74 (273)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC--C---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CH
Confidence 445666777777777777777777777777652 2 45666677777777 777777777777776654 56
Q ss_pred hHHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCchhh
Q 016027 145 VTYGTLVEGYCR----LRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVE----AGRFEEVSGMMERFLVCEPGPTMVT 216 (396)
Q Consensus 145 ~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 216 (396)
..+..+...+.. .+++++|+..+++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...
T Consensus 75 ~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a 148 (273)
T 1ouv_A 75 NGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDG 148 (273)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHH
Confidence 666667777766 677777777777766654 45566666666666 666777776666666643 3445
Q ss_pred HHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhc----cCCHHHHHHHHHHHHHCCCCCChhhHH
Q 016027 217 YTSLVKGYCK----AGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSK----FGKVEDAMNLYRKMIESGYTPDRLTYH 288 (396)
Q Consensus 217 ~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 288 (396)
+..+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+.
T Consensus 149 ~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 222 (273)
T 1ouv_A 149 CTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCF 222 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHH
Confidence 5555555555 566666666666655542 33445555555555 555555555555555543 134444
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHc
Q 016027 289 ILLKILCK----EDKLDLAIQVSKEMKCR 313 (396)
Q Consensus 289 ~l~~~~~~----~~~~~~a~~~~~~~~~~ 313 (396)
.+...|.. .+++++|...+++..+.
T Consensus 223 ~l~~~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 223 NLGAMQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence 45555554 55555555555555544
No 51
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.78 E-value=1.6e-17 Score=136.77 Aligned_cols=252 Identities=12% Similarity=-0.018 Sum_probs=157.3
Q ss_pred HHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhc
Q 016027 43 YARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRS 122 (396)
Q Consensus 43 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 122 (396)
+...|++++|+..|+++.+.... ..|.++.++..++..+...|++++|.+.|+++...+|. +..+|..++..+...
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~la~~~~~~ 90 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRAL-TDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD---MPEVFNYLGIYLTQA 90 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCC-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHT
T ss_pred cCccchHHHHHHHHHHHHhcccc-cCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC---cHHHHHHHHHHHHHc
Confidence 34567888888888888875211 11345677888888888888888888888888876543 677888888888888
Q ss_pred CChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 016027 123 KNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMM 202 (396)
Q Consensus 123 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 202 (396)
|++++|...|+++.+... .+..++..+..++...|++++|...++++.+.. |+.......+..+...|++++|...+
T Consensus 91 ~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~ 167 (275)
T 1xnf_A 91 GNFDAAYEAFDSVLELDP-TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVL 167 (275)
T ss_dssp TCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCc-cccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHH
Confidence 888888888888877642 256777777788888888888888888877763 33333334444455667777777777
Q ss_pred HHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---ChhhHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 016027 203 ERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLP---SPTTYNYFFRYFSKFGKVEDAMNLYRKMIESG 279 (396)
Q Consensus 203 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 279 (396)
.+.....+ ++...+ .++..+...++.++|...+.......... +..++..+...+...|++++|...|+++...+
T Consensus 168 ~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 245 (275)
T 1xnf_A 168 KQHFEKSD-KEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 245 (275)
T ss_dssp HHHHHHSC-CCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHhcCC-cchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 66665433 232233 35555666666666666666665432110 13445555555666666666666666555542
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 016027 280 YTPDRLTYHILLKILCKEDKLDLAIQVS 307 (396)
Q Consensus 280 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 307 (396)
|+. +.....++...|++++|++.+
T Consensus 246 --p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 246 --VHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp --CTT--CHHHHHHHHHHHHHHHC----
T ss_pred --chh--HHHHHHHHHHHHHHHhhHHHH
Confidence 211 112233444455555554443
No 52
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.77 E-value=8.3e-17 Score=129.85 Aligned_cols=203 Identities=12% Similarity=0.065 Sum_probs=168.0
Q ss_pred hhhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHH
Q 016027 3 KVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSL 82 (396)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 82 (396)
..+...|++++|...|.++++. .|+ +..++..++.++...|++++|+..|+++.... |.+..++..++..+
T Consensus 31 ~~~~~~~~~~~A~~~~~~~l~~--~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~la~~~ 101 (243)
T 2q7f_A 31 GRGSEFGDYEKAAEAFTKAIEE--NKE--DAIPYINFANLLSSVNELERALAFYDKALELD-----SSAATAYYGAGNVY 101 (243)
T ss_dssp -----------CCTTHHHHHTT--CTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHH
T ss_pred HHHHHhhCHHHHHHHHHHHHHh--Ccc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CcchHHHHHHHHHH
Confidence 4577899999999999999985 444 37799999999999999999999999999874 77889999999999
Q ss_pred HHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHH
Q 016027 83 CKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDR 162 (396)
Q Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 162 (396)
...|++++|.+.++++....+. +...+..+...+...|++++|...++++.+... .+...+..+...+...|++++
T Consensus 102 ~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALRAGME---NGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE-NDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHHTCC---SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCHH
T ss_pred HHhccHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999887543 678899999999999999999999999988743 378889999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHH
Q 016027 163 AIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSL 220 (396)
Q Consensus 163 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 220 (396)
|+..++++.+.. +.+..++..+..++...|++++|...++++.+..+. +...+..+
T Consensus 178 A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~ 233 (243)
T 2q7f_A 178 ALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPD-HMLALHAK 233 (243)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcc-hHHHHHHH
Confidence 999999998874 556788999999999999999999999999987553 44444443
No 53
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.76 E-value=1.3e-15 Score=121.23 Aligned_cols=205 Identities=12% Similarity=0.060 Sum_probs=154.5
Q ss_pred CCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHH
Q 016027 69 DSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYG 148 (396)
Q Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 148 (396)
|.++.++..++..+...|++++|.+.|+++....|. +...+..+...+...|++++|...|+++.+... .+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~ 80 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPK---NELAWLVRAEIYQYLKVNDKAQESFRQALSIKP-DSAEINN 80 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc---chHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChHHHH
Confidence 566778888888899999999999999988876543 577888888888888899999888888877643 3667788
Q ss_pred HHHHHHHcc-CCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHh
Q 016027 149 TLVEGYCRL-RRVDRAIRLVKEMRKEGIEP-NAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCK 226 (396)
Q Consensus 149 ~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 226 (396)
.+...+... |++++|...++++.+.+..| +...+..+..++...|++++|...++++.+..+. +...+..+..++..
T Consensus 81 ~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~ 159 (225)
T 2vq2_A 81 NYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKML 159 (225)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHH
Confidence 888888888 88888888888887732223 3566777777888888888888888887776442 56677777777888
Q ss_pred cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 016027 227 AGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIES 278 (396)
Q Consensus 227 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 278 (396)
.|++++|...++.+.+.....+...+..+...+...|+.+.+..+++.+.+.
T Consensus 160 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 160 AGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 8888888888877776543135666666666777777777777777776654
No 54
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.76 E-value=1.1e-15 Score=123.92 Aligned_cols=201 Identities=12% Similarity=0.058 Sum_probs=136.3
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHH
Q 016027 72 ASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLV 151 (396)
Q Consensus 72 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 151 (396)
+.++..++..+...|++++|.+.|+++...++. +...+..+...+...|++++|.+.|+++.+... .+...+..+.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la 112 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS---SADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYG 112 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHH
Confidence 556777777777888888888888877766433 566777777777778888888888877776542 2566677777
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCh
Q 016027 152 EGYCRLRRVDRAIRLVKEMRKEGIEP-NAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDL 230 (396)
Q Consensus 152 ~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 230 (396)
..+...|++++|.++++++.+.+..| +...+..+..++...|++++|...++++.+..+ .+...+..+...+...|++
T Consensus 113 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~ 191 (252)
T 2ho1_A 113 GFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-NQPSVALEMADLLYKEREY 191 (252)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCCH
Confidence 77777777777777777776622223 445566666777777777777777777766543 2456666666777777777
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 016027 231 EGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIES 278 (396)
Q Consensus 231 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 278 (396)
++|...++.+.+.. +.+...+..+...+...|++++|.++++++.+.
T Consensus 192 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 192 VPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 77777777766653 235555666666666667777777766666654
No 55
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.76 E-value=7.1e-17 Score=140.69 Aligned_cols=298 Identities=14% Similarity=0.075 Sum_probs=200.4
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCc----hhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCC---
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSG----ASLFEILLDSLCKQGRVKAASEYFHKRKELDQSW--- 105 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--- 105 (396)
...+...+..+...|++++|+..|+++.... |.+ ..++..++..+...|++++|...++++.......
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 83 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVG-----TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQ 83 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-----cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccc
Confidence 5678889999999999999999999999874 444 3578889999999999999999999876542111
Q ss_pred CCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-CC----hhHHHHHHHHHHccCC--------------------H
Q 016027 106 APTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVT-PN----VVTYGTLVEGYCRLRR--------------------V 160 (396)
Q Consensus 106 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~--------------------~ 160 (396)
+....++..+...+...|++++|...+++..+.... ++ ..++..+...+...|+ +
T Consensus 84 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~ 163 (406)
T 3sf4_A 84 LGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDAL 163 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHH
Confidence 113557788889999999999999999887653110 11 3477788888888888 8
Q ss_pred HHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-C----chhhHHHHHHHHHhcCCh
Q 016027 161 DRAIRLVKEMRKE----GI-EPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPG-P----TMVTYTSLVKGYCKAGDL 230 (396)
Q Consensus 161 ~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~ 230 (396)
++|+..+++..+. +. +....++..+...+...|++++|...+++..+.... + ...++..+...+...|++
T Consensus 164 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 243 (406)
T 3sf4_A 164 QAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEF 243 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCh
Confidence 8888888776543 11 112345667777788888888888888877653211 1 123667777777888888
Q ss_pred HHHHHHHHHHHHCCCC-CC----hhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCC-CC----hhhHHHHHHHHHhcCCH
Q 016027 231 EGASKILKMMISRGFL-PS----PTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYT-PD----RLTYHILLKILCKEDKL 300 (396)
Q Consensus 231 ~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~ 300 (396)
++|...+++....... ++ ..++..+...+...|++++|...+++..+.... .+ ..++..+..++...|++
T Consensus 244 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 323 (406)
T 3sf4_A 244 ETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNH 323 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 8888887776643110 01 345666677777777777777777766543100 11 34556666677777777
Q ss_pred HHHHHHHHHHHHcCC-----CCChhhHHHHHHHHHhcCCh
Q 016027 301 DLAIQVSKEMKCRGC-----DIDLDTSTMLIHLLCRMYKF 335 (396)
Q Consensus 301 ~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~ 335 (396)
++|...+++..+... .....++..+...+...|+.
T Consensus 324 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 324 DQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 777777776654310 11133444555555555544
No 56
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.76 E-value=3.4e-18 Score=156.21 Aligned_cols=150 Identities=10% Similarity=0.131 Sum_probs=117.7
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHh---CCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 016027 109 VRVYNILLNGWFRSKNVKDAERFWLEMRK---ENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTV 185 (396)
Q Consensus 109 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 185 (396)
..+|+++|.+|++.|++++|.++|++|.+ .|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 45799999999999999999999987754 478899999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCC-HHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC------hhhHHHHHHH
Q 016027 186 IDGLVEAGR-FEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPS------PTTYNYFFRY 258 (396)
Q Consensus 186 ~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~ 258 (396)
|.++++.|+ .++|.++|++|.+.|..||..+|+.++....+. .+++.++.+ ..++.|+ ..+...|.+.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~dl 281 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRDV 281 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHHH
Confidence 999999887 578889999999999999999999887655443 333333333 2233333 4455556666
Q ss_pred HhccC
Q 016027 259 FSKFG 263 (396)
Q Consensus 259 ~~~~~ 263 (396)
|.+.+
T Consensus 282 ~s~d~ 286 (1134)
T 3spa_A 282 YAKDG 286 (1134)
T ss_dssp HCCCS
T ss_pred HccCC
Confidence 66544
No 57
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.75 E-value=6e-19 Score=161.09 Aligned_cols=118 Identities=17% Similarity=0.211 Sum_probs=74.7
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHH---CCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 016027 214 MVTYTSLVKGYCKAGDLEGASKILKMMIS---RGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHIL 290 (396)
Q Consensus 214 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 290 (396)
..+|+++|.+|++.|++++|.++|..|.+ .|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||+.+
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 45666666666666666666666655543 355666666666666666666666666666666666666666666666
Q ss_pred HHHHHhcCC-HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 016027 291 LKILCKEDK-LDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCR 331 (396)
Q Consensus 291 ~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 331 (396)
|.++++.|+ .++|.++|++|.+.|+.||..+|+.++....+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 666666665 35566666666666666666666666544433
No 58
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.74 E-value=1.3e-16 Score=139.40 Aligned_cols=239 Identities=13% Similarity=0.059 Sum_probs=146.8
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCch----hHHHHHHHHHHHcCChHHHHHHHHHHhhccCC---C
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGA----SLFEILLDSLCKQGRVKAASEYFHKRKELDQS---W 105 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~ 105 (396)
...+..++..+...|++++|+..|+++.+.. |.++ .++..++..|...|++++|.+.++++...... .
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 122 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAG-----TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDR 122 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-----ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCc
Confidence 3456678888899999999999999998874 4443 47888888999999999999998887654111 1
Q ss_pred CCChHHHHHHHHHHHhcCChhHHHHHHHHHHhC----C-CCCChhHHHHHHHHHHccCC-----------------HHHH
Q 016027 106 APTVRVYNILLNGWFRSKNVKDAERFWLEMRKE----N-VTPNVVTYGTLVEGYCRLRR-----------------VDRA 163 (396)
Q Consensus 106 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~-----------------~~~a 163 (396)
.....++..+...+...|++++|...|++..+. + .+....++..+...+...|+ +++|
T Consensus 123 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A 202 (411)
T 4a1s_A 123 LGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRA 202 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHH
Confidence 124566778888888889999988888877653 1 11123466777777777788 7777
Q ss_pred HHHHHHHHHc----CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-C----chhhHHHHHHHHHhcCChHHH
Q 016027 164 IRLVKEMRKE----GI-EPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPG-P----TMVTYTSLVKGYCKAGDLEGA 233 (396)
Q Consensus 164 ~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~a 233 (396)
++.+++..+. +. +....++..+...+...|++++|...+++..+.... . ...++..+..+|...|++++|
T Consensus 203 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 282 (411)
T 4a1s_A 203 VEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDA 282 (411)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHH
Confidence 7776665442 11 111234555566666666666666666665543111 0 012445555555556666666
Q ss_pred HHHHHHHHHCCCC-----CChhhHHHHHHHHhccCCHHHHHHHHHHHH
Q 016027 234 SKILKMMISRGFL-----PSPTTYNYFFRYFSKFGKVEDAMNLYRKMI 276 (396)
Q Consensus 234 ~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 276 (396)
...+++....... ....++..+...+...|++++|...+++..
T Consensus 283 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 330 (411)
T 4a1s_A 283 AEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHL 330 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5555555432100 012334444444555555555555554443
No 59
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.74 E-value=1.2e-16 Score=139.22 Aligned_cols=303 Identities=15% Similarity=0.082 Sum_probs=229.8
Q ss_pred CCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCC-hHHHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCC-
Q 016027 69 DSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPT-VRVYNILLNGWFRSKNVKDAERFWLEMRKE----NVTP- 142 (396)
Q Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~- 142 (396)
......+...+..+...|++++|...|+++....+...+. ..++..+...+...|++++|...+++.... +..|
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 4556677889999999999999999999999875441111 357888999999999999999999987543 2111
Q ss_pred ChhHHHHHHHHHHccCCHHHHHHHHHHHHHcC----C-CCCHHHHHHHHHHHHHcCC--------------------HHH
Q 016027 143 NVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEG----I-EPNAIVYNTVIDGLVEAGR--------------------FEE 197 (396)
Q Consensus 143 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~~~~~~l~~~~~~~~~--------------------~~~ 197 (396)
...++..+...+...|++++|+..+++..+.. . .....++..+...+...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 24577888999999999999999999887641 0 1114477788889999999 999
Q ss_pred HHHHHHHHHhc----CC-CCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CC----hhhHHHHHHHHhccCCHHH
Q 016027 198 VSGMMERFLVC----EP-GPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFL-PS----PTTYNYFFRYFSKFGKVED 267 (396)
Q Consensus 198 a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~ 267 (396)
|...+++.... +. .....++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 245 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 245 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 99999887653 11 112457888899999999999999999988754111 11 2378888899999999999
Q ss_pred HHHHHHHHHHCCCC-CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----hhhHHHHHHHHHhcCChhH
Q 016027 268 AMNLYRKMIESGYT-PD----RLTYHILLKILCKEDKLDLAIQVSKEMKCRGCD-ID----LDTSTMLIHLLCRMYKFDE 337 (396)
Q Consensus 268 a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~ 337 (396)
|...+++....... .+ ..++..+...+...|++++|...++++.+.... .+ ..++..+...|...|++++
T Consensus 246 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 325 (406)
T 3sf4_A 246 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQ 325 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 99999987753111 11 457788889999999999999999998764211 11 5677888999999999999
Q ss_pred HHHHHHHHHHC----CCC-CCHHHHHHHHHHHHHcCCch
Q 016027 338 ASAEFEDMIRR----GLV-PHYLTFKRLNDEFKKRGMTA 371 (396)
Q Consensus 338 a~~~~~~~~~~----~~~-p~~~~~~~l~~~~~~~g~~~ 371 (396)
|...+++..+. +.. ....++..+...+...|+..
T Consensus 326 A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 326 AMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 99999987652 211 12456777888888888763
No 60
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.74 E-value=1.6e-15 Score=116.64 Aligned_cols=166 Identities=16% Similarity=0.088 Sum_probs=131.7
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHH
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVY 112 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 112 (396)
...|..++..+...|++++|++.|+++.+.+ |.++.++..++.+|...|++++|...+..+....+. +...+
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~ 76 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-----PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT---SAEAY 76 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC---CHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch---hHHHH
Confidence 5678888888888888888888888888875 777888888888888888888888888888776443 56677
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 016027 113 NILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEA 192 (396)
Q Consensus 113 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 192 (396)
..+...+...++++.+...+.+.....+. +...+..+..++...|++++|++.|++..+.. +.+..++..+..++.+.
T Consensus 77 ~~~~~~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~ 154 (184)
T 3vtx_A 77 YILGSANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGK 154 (184)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHC
Confidence 77778888888888888888887776433 66777788888888888888888888887764 45667777888888888
Q ss_pred CCHHHHHHHHHHHHhc
Q 016027 193 GRFEEVSGMMERFLVC 208 (396)
Q Consensus 193 ~~~~~a~~~~~~~~~~ 208 (396)
|++++|+..|+++++.
T Consensus 155 g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 155 GLRDEAVKYFKKALEK 170 (184)
T ss_dssp TCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHhC
Confidence 8888888888887774
No 61
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.73 E-value=5.1e-17 Score=141.95 Aligned_cols=274 Identities=16% Similarity=0.092 Sum_probs=205.6
Q ss_pred hhhhhccCchhHHHHHHHHhCCCCCCCCCC--hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccc-cCCCCchhHHHHHH
Q 016027 3 KVLAKAKEFDSAWCLLLDKIGGHEVPDFVS--KDTFVILIRRYARAGMVEAAIWTFEFANNLDMV-KNFDSGASLFEILL 79 (396)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~l~ 79 (396)
..+...|++++|+..|+++++. .|+... ..++..++.++...|++++|+..|+++...... .+.+....++..++
T Consensus 56 ~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 133 (411)
T 4a1s_A 56 ERLCNAGDCRAGVAFFQAAIQA--GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLG 133 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHHh--cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHH
Confidence 4567899999999999999985 333110 157889999999999999999999999875211 11245567889999
Q ss_pred HHHHHcCChHHHHHHHHHHhhccCC---CCCChHHHHHHHHHHHhcCC-----------------hhHHHHHHHHHHhC-
Q 016027 80 DSLCKQGRVKAASEYFHKRKELDQS---WAPTVRVYNILLNGWFRSKN-----------------VKDAERFWLEMRKE- 138 (396)
Q Consensus 80 ~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~~~~~~- 138 (396)
..|...|++++|...++++....+. ......++..+...+...|+ +++|+..+++..+.
T Consensus 134 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~ 213 (411)
T 4a1s_A 134 NTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLM 213 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998765211 11235578889999999999 99999999887542
Q ss_pred ---CC-CCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 016027 139 ---NV-TPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIE-PN----AIVYNTVIDGLVEAGRFEEVSGMMERFLVCE 209 (396)
Q Consensus 139 ---~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 209 (396)
+. .....++..+...+...|++++|+..+++..+.... .+ ...+..+..++...|++++|...+++.....
T Consensus 214 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 293 (411)
T 4a1s_A 214 RDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALA 293 (411)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 11 112347888899999999999999999998764210 11 2367788899999999999999999887642
Q ss_pred CC-----CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC-----CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 016027 210 PG-----PTMVTYTSLVKGYCKAGDLEGASKILKMMISRGF-----LPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIES 278 (396)
Q Consensus 210 ~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 278 (396)
.. ....++..+..++...|++++|...+++...... .....++..+...+...|++++|...+++..+.
T Consensus 294 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 294 VELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 21 1256788899999999999999999998875411 111335666667777777777777777776654
No 62
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.73 E-value=1.2e-14 Score=121.57 Aligned_cols=233 Identities=10% Similarity=0.082 Sum_probs=157.3
Q ss_pred hHHHHHHHHHHHc----CCH----HHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHH-------cCCh-------HHH
Q 016027 34 DTFVILIRRYARA----GMV----EAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCK-------QGRV-------KAA 91 (396)
Q Consensus 34 ~~~~~l~~~~~~~----g~~----~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~A 91 (396)
..|...+....+. ++. ++|+..|+++.... |.++.+|..++..+.. .|++ ++|
T Consensus 9 ~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~-----p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A 83 (308)
T 2ond_A 9 DMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-----GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEA 83 (308)
T ss_dssp HHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHc-----CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHH
Confidence 3555555544333 233 68888999988875 8888888888888764 4775 888
Q ss_pred HHHHHHHhh-ccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-hh-HHHHHHHHHHccCCHHHHHHHHH
Q 016027 92 SEYFHKRKE-LDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPN-VV-TYGTLVEGYCRLRRVDRAIRLVK 168 (396)
Q Consensus 92 ~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~~~~~~a~~~~~ 168 (396)
..+|+++.. .+|. +...|..++..+.+.|++++|..+|+++++. .|+ .. .|..++..+.+.|++++|..+|+
T Consensus 84 ~~~~~rAl~~~~p~---~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 158 (308)
T 2ond_A 84 ANIYERAISTLLKK---NMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHTTTTTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHhCcc---cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 888888887 4443 5667888888888888888888888888875 333 33 67777777777888888888888
Q ss_pred HHHHcCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCC-CC
Q 016027 169 EMRKEGIEPNAIVYNTVIDGLV-EAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRG-FL 246 (396)
Q Consensus 169 ~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~ 246 (396)
+..+.. +.+...|........ ..|++++|..+|++.++..+. +...|..++..+.+.|++++|..+|++..... .+
T Consensus 159 ~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~ 236 (308)
T 2ond_A 159 KAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCC
Confidence 877663 334444443333222 257777777777777665442 56666677777777777777777777777642 23
Q ss_pred C--ChhhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 016027 247 P--SPTTYNYFFRYFSKFGKVEDAMNLYRKMIES 278 (396)
Q Consensus 247 ~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 278 (396)
| ....|..++......|+.+.|..+++++.+.
T Consensus 237 p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3 3445666666666667777777777666654
No 63
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.73 E-value=4e-16 Score=132.15 Aligned_cols=204 Identities=17% Similarity=0.130 Sum_probs=132.6
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCc----hhHHHHHHHHHHHcCChHHHHHHHHHHhhccCC---C
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSG----ASLFEILLDSLCKQGRVKAASEYFHKRKELDQS---W 105 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~ 105 (396)
...+...+..+...|++++|+..|+++.+.. |.+ ..++..++..+...|++++|.+.++++...... .
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 79 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVG-----TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQ 79 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-----cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccccc
Confidence 3467778889999999999999999999874 444 467888999999999999999999887654111 1
Q ss_pred CCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCC----hhHHHHHHHHHHccCC--------------------H
Q 016027 106 APTVRVYNILLNGWFRSKNVKDAERFWLEMRKENV-TPN----VVTYGTLVEGYCRLRR--------------------V 160 (396)
Q Consensus 106 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~--------------------~ 160 (396)
.....++..+...+...|++++|...+++..+... .++ ..++..+...+...|+ +
T Consensus 80 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 159 (338)
T 3ro2_A 80 LGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNAL 159 (338)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHH
Confidence 12355677888888899999999999888765311 012 3366777777888888 7
Q ss_pred HHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----CchhhHHHHHHHHHhcCCh
Q 016027 161 DRAIRLVKEMRKE----GI-EPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPG-----PTMVTYTSLVKGYCKAGDL 230 (396)
Q Consensus 161 ~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~ 230 (396)
++|.+.+++..+. +. +....++..+...+...|++++|...+++..+.... ....++..+...+...|++
T Consensus 160 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 239 (338)
T 3ro2_A 160 QAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEF 239 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCH
Confidence 7777777665432 10 111234555556666666666666666665432110 0112444555555555555
Q ss_pred HHHHHHHHHHH
Q 016027 231 EGASKILKMMI 241 (396)
Q Consensus 231 ~~a~~~~~~~~ 241 (396)
++|...+++..
T Consensus 240 ~~A~~~~~~al 250 (338)
T 3ro2_A 240 ETASEYYKKTL 250 (338)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555544
No 64
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.72 E-value=6.3e-15 Score=123.19 Aligned_cols=219 Identities=13% Similarity=0.056 Sum_probs=182.6
Q ss_pred hhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHH-------cCCH-------HHHHHHHHHHhh-cccccCCCCchhHHH
Q 016027 12 DSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYAR-------AGMV-------EAAIWTFEFANN-LDMVKNFDSGASLFE 76 (396)
Q Consensus 12 ~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~-------~g~~-------~~A~~~~~~~~~-~~~~~~~~~~~~~~~ 76 (396)
++|...|++++.. .|+ +..+|..++..+.. .|++ ++|+.+|+++.. .. |.+..+|.
T Consensus 33 ~~a~~~~~~al~~--~p~--~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~-----p~~~~~~~ 103 (308)
T 2ond_A 33 KRVMFAYEQCLLV--LGH--HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL-----KKNMLLYF 103 (308)
T ss_dssp HHHHHHHHHHHHH--HTT--CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT-----TTCHHHHH
T ss_pred HHHHHHHHHHHHH--cCC--CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC-----cccHHHHH
Confidence 6888999999984 455 57799999998864 5886 999999999998 44 67788999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHhhccCCCCCChH-HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHH
Q 016027 77 ILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVR-VYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYC 155 (396)
Q Consensus 77 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 155 (396)
.++..+...|++++|.++|+++.+.+|. +.. +|..++..+.+.|++++|..+|++..+... ++...|...+....
T Consensus 104 ~~~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~ 179 (308)
T 2ond_A 104 AYADYEESRMKYEKVHSIYNRLLAIEDI---DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEY 179 (308)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTSSSS---CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcccc---CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHH
Confidence 9999999999999999999999986443 344 899999999999999999999999998753 35555554444432
Q ss_pred -ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCC--chhhHHHHHHHHHhcCChH
Q 016027 156 -RLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCE-PGP--TMVTYTSLVKGYCKAGDLE 231 (396)
Q Consensus 156 -~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~ 231 (396)
..|++++|.++|++.++.. +.+...+..++..+.+.|++++|..+|+++.... ..| ....|..++....+.|+.+
T Consensus 180 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~ 258 (308)
T 2ond_A 180 YCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLA 258 (308)
T ss_dssp HTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 3699999999999998873 4577889999999999999999999999999863 233 4678889999999999999
Q ss_pred HHHHHHHHHHHCC
Q 016027 232 GASKILKMMISRG 244 (396)
Q Consensus 232 ~a~~~~~~~~~~~ 244 (396)
.|..+++++.+..
T Consensus 259 ~a~~~~~~a~~~~ 271 (308)
T 2ond_A 259 SILKVEKRRFTAF 271 (308)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHc
Confidence 9999999998863
No 65
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.72 E-value=1.3e-16 Score=135.11 Aligned_cols=274 Identities=14% Similarity=0.068 Sum_probs=196.4
Q ss_pred hhhhhccCchhHHHHHHHHhCCCCCCCCCC--hhHHHHHHHHHHHcCCHHHHHHHHHHHhhccccc-CCCCchhHHHHHH
Q 016027 3 KVLAKAKEFDSAWCLLLDKIGGHEVPDFVS--KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVK-NFDSGASLFEILL 79 (396)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~l~ 79 (396)
..+...|++++|...|+++++. .|+... ..++..++..+...|++++|++.++++....... ..+....++..++
T Consensus 13 ~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 90 (338)
T 3ro2_A 13 ERLCKSGDCRAGVSFFEAAVQV--GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLG 90 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence 4577899999999999999985 333110 3578899999999999999999999987652211 1234467788999
Q ss_pred HHHHHcCChHHHHHHHHHHhhccCCCCC---ChHHHHHHHHHHHhcCC--------------------hhHHHHHHHHHH
Q 016027 80 DSLCKQGRVKAASEYFHKRKELDQSWAP---TVRVYNILLNGWFRSKN--------------------VKDAERFWLEMR 136 (396)
Q Consensus 80 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~~~ 136 (396)
..+...|++++|.+.++++....+.... ...++..+...+...|+ +++|...+++..
T Consensus 91 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~ 170 (338)
T 3ro2_A 91 NTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENL 170 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 9999999999999999998765332111 13478888999999999 999999998875
Q ss_pred hC----CCC-CChhHHHHHHHHHHccCCHHHHHHHHHHHHHcC----C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 016027 137 KE----NVT-PNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEG----I-EPNAIVYNTVIDGLVEAGRFEEVSGMMERFL 206 (396)
Q Consensus 137 ~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 206 (396)
.. +.. ....++..+...+...|++++|...+++..+.. . .....++..+...+...|++++|...+++..
T Consensus 171 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 250 (338)
T 3ro2_A 171 SLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTL 250 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 42 111 124477888899999999999999999887541 1 1113367788899999999999999999887
Q ss_pred hcCCC-----CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC-----CCChhhHHHHHHHHhccCCHHHHHHHHHHHH
Q 016027 207 VCEPG-----PTMVTYTSLVKGYCKAGDLEGASKILKMMISRGF-----LPSPTTYNYFFRYFSKFGKVEDAMNLYRKMI 276 (396)
Q Consensus 207 ~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 276 (396)
..... ....++..+...+...|++++|...+++..+... .....++..+...+...|++++|...+++..
T Consensus 251 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 330 (338)
T 3ro2_A 251 LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 330 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 53211 0145666777778888888888888777654310 0012345555666666666666666666655
Q ss_pred HC
Q 016027 277 ES 278 (396)
Q Consensus 277 ~~ 278 (396)
+.
T Consensus 331 ~~ 332 (338)
T 3ro2_A 331 EI 332 (338)
T ss_dssp HC
T ss_pred HH
Confidence 43
No 66
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.71 E-value=6.3e-15 Score=113.32 Aligned_cols=169 Identities=15% Similarity=0.111 Sum_probs=142.7
Q ss_pred CCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHH
Q 016027 69 DSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYG 148 (396)
Q Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 148 (396)
..++.+|..++..|...|++++|++.|+++.+.+|. +..++..+..++.+.|++++|...+......... +...+.
T Consensus 2 ge~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~ 77 (184)
T 3vtx_A 2 GETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN---NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYY 77 (184)
T ss_dssp --CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHH
T ss_pred CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHH
Confidence 356778999999999999999999999999988765 7888999999999999999999999988876433 677778
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcC
Q 016027 149 TLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAG 228 (396)
Q Consensus 149 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 228 (396)
.+...+...++++.+...+.+..+.. +.+...+..+..++.+.|++++|++.|++..+..+ .+..+|..+..+|.+.|
T Consensus 78 ~~~~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~lg~~~~~~g 155 (184)
T 3vtx_A 78 ILGSANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP-GFIRAYQSIGLAYEGKG 155 (184)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc-hhhhHHHHHHHHHHHCC
Confidence 88888888999999999998888774 55677888888889999999999999999888765 36778888888999999
Q ss_pred ChHHHHHHHHHHHHC
Q 016027 229 DLEGASKILKMMISR 243 (396)
Q Consensus 229 ~~~~a~~~~~~~~~~ 243 (396)
++++|...|++..+.
T Consensus 156 ~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 156 LRDEAVKYFKKALEK 170 (184)
T ss_dssp CHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHhC
Confidence 999999999988875
No 67
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.71 E-value=3.5e-15 Score=128.99 Aligned_cols=298 Identities=7% Similarity=-0.028 Sum_probs=159.5
Q ss_pred hhhccCchhHHHHHHHHhCCCCC--CCCCChhHHHHHHH--HHHHcCCHHHHH-----------HHHHHHhhcccccCCC
Q 016027 5 LAKAKEFDSAWCLLLDKIGGHEV--PDFVSKDTFVILIR--RYARAGMVEAAI-----------WTFEFANNLDMVKNFD 69 (396)
Q Consensus 5 ~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~~~~l~~--~~~~~g~~~~A~-----------~~~~~~~~~~~~~~~~ 69 (396)
+.+++++++|..++.++.+.... .+ .+...|..++. .....+.++.+. +.++.+... +
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~-~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~------~ 94 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEED-QDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKK------Q 94 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHH------T
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhc------C
Confidence 45678888888888776543211 12 01223333332 222334444444 555555443 2
Q ss_pred Cchh------HHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCC---ChHHHHHHHHHHHhcCChhHHHHHHHHHHhCC-
Q 016027 70 SGAS------LFEILLDSLCKQGRVKAASEYFHKRKELDQSWAP---TVRVYNILLNGWFRSKNVKDAERFWLEMRKEN- 139 (396)
Q Consensus 70 ~~~~------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~- 139 (396)
.+.. .+...+..+...|++++|...|+++...-..... ...++..+...+...|++++|...+++..+.-
T Consensus 95 ~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~ 174 (383)
T 3ulq_A 95 ARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYK 174 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 2211 2233666777788888888888887664222111 24567777777788888888888777765431
Q ss_pred -CC----CChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCC-CC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-
Q 016027 140 -VT----PNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGI-EP----NAIVYNTVIDGLVEAGRFEEVSGMMERFLVC- 208 (396)
Q Consensus 140 -~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~- 208 (396)
.. ....+++.+..+|...|++++|+..+++..+... .+ ...++..+..+|...|++++|+..+++..+.
T Consensus 175 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 254 (383)
T 3ulq_A 175 EHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVF 254 (383)
T ss_dssp TCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 10 0134566666777777777777777766654310 01 1135556666666777777777766666552
Q ss_pred ---CC-CCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCC----CCCChhhHHHHHHHHhccCC---HHHHHHHHHHHHH
Q 016027 209 ---EP-GPTMVTYTSLVKGYCKAGDLEGASKILKMMISRG----FLPSPTTYNYFFRYFSKFGK---VEDAMNLYRKMIE 277 (396)
Q Consensus 209 ---~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~ 277 (396)
+. +....++..+..++...|++++|...+++..+.. .+.....+..+...+...|+ ..+|+.++++.
T Consensus 255 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-- 332 (383)
T 3ulq_A 255 EESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-- 332 (383)
T ss_dssp HHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT--
T ss_pred HhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC--
Confidence 11 2234556666666666666666666666655421 11111223445555555555 44444444433
Q ss_pred CCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016027 278 SGYTP-DRLTYHILLKILCKEDKLDLAIQVSKEMKC 312 (396)
Q Consensus 278 ~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 312 (396)
+..| ....+..+...|...|++++|...+++..+
T Consensus 333 -~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 333 -MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp -TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1111 122344455555555555555555555543
No 68
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.71 E-value=8.9e-16 Score=135.97 Aligned_cols=215 Identities=11% Similarity=0.005 Sum_probs=138.9
Q ss_pred CHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCCh-HHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChh
Q 016027 48 MVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRV-KAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVK 126 (396)
Q Consensus 48 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 126 (396)
.++++++.++...... +.+..++..++..+...|++ ++|++.|+++.+.+|. +...|..+..++...|+++
T Consensus 83 ~~~~al~~l~~~~~~~-----~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~---~~~a~~~lg~~~~~~g~~~ 154 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-----QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE---LVEAWNQLGEVYWKKGDVT 154 (474)
T ss_dssp HHHHHHHHHHHHHTTC-----CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHhccC-----chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHcCCHH
Confidence 4566666666555542 55666666677777777777 7777777776665443 5666667777777777777
Q ss_pred HHHHHHHHHHhCCCCCChhHHHHHHHHHHcc---------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-----
Q 016027 127 DAERFWLEMRKENVTPNVVTYGTLVEGYCRL---------RRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEA----- 192 (396)
Q Consensus 127 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 192 (396)
+|...|++..+.. |+...+..+..++... |++++|++.+++..+.. +.+...+..+..+|...
T Consensus 155 ~A~~~~~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~ 231 (474)
T 4abn_A 155 SAHTCFSGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTG 231 (474)
T ss_dssp HHHHHHHHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhc
Confidence 7777777766643 4456666666666666 77777777777766653 34556666666666666
Q ss_pred ---CCHHHHHHHHHHHHhcCCC--CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHH
Q 016027 193 ---GRFEEVSGMMERFLVCEPG--PTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVED 267 (396)
Q Consensus 193 ---~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 267 (396)
|++++|+..|+++.+..+. .+...|..+..+|...|++++|...|++..+.... +...+..+..++...|++++
T Consensus 232 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~e 310 (474)
T 4abn_A 232 QNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTS 310 (474)
T ss_dssp CCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHH
Confidence 6677777777777665331 25566666777777777777777777776665422 45566666666666677776
Q ss_pred HHHHHHH
Q 016027 268 AMNLYRK 274 (396)
Q Consensus 268 a~~~~~~ 274 (396)
|...+.+
T Consensus 311 Ai~~~~~ 317 (474)
T 4abn_A 311 LLESKGK 317 (474)
T ss_dssp HHHHTTT
T ss_pred HHHHhcc
Confidence 6665544
No 69
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.70 E-value=5.1e-15 Score=127.91 Aligned_cols=231 Identities=12% Similarity=-0.023 Sum_probs=145.4
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------CchhhHH
Q 016027 150 LVEGYCRLRRVDRAIRLVKEMRKE----GIEP-NAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPG------PTMVTYT 218 (396)
Q Consensus 150 l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~ 218 (396)
....+...|++++|+..+++..+. +-++ ...++..+..++...|++++|+..+.+..+.... ....++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 445556667777777777666543 1111 2345666667777777777777777766553111 1134566
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCC-C----ChhhHHHHHHHHhccCCHHHHHHHHHHHHHC----CC-CCChhhHH
Q 016027 219 SLVKGYCKAGDLEGASKILKMMISRGFL-P----SPTTYNYFFRYFSKFGKVEDAMNLYRKMIES----GY-TPDRLTYH 288 (396)
Q Consensus 219 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~ 288 (396)
.+..+|...|++++|...+++..+.... + ...++..+...|...|++++|...+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 6777777777777777777776643110 1 1236667777788888888888888777662 22 22355677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC----CCCChhhHHHHHHHHHhcCC---hhHHHHHHHHHHHCCCCCC-HHHHHHH
Q 016027 289 ILLKILCKEDKLDLAIQVSKEMKCRG----CDIDLDTSTMLIHLLCRMYK---FDEASAEFEDMIRRGLVPH-YLTFKRL 360 (396)
Q Consensus 289 ~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~p~-~~~~~~l 360 (396)
.+..++...|++++|...+++..+.. .+.....+..+...+...|+ +++|+.++++. +..|+ ...+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 77778888888888888888776531 11112334567777777787 66666666554 22222 3456677
Q ss_pred HHHHHHcCCchHHHHHHHHHhcc
Q 016027 361 NDEFKKRGMTALAQKLCNVMSSV 383 (396)
Q Consensus 361 ~~~~~~~g~~~~A~~~~~~~~~~ 383 (396)
...|...|++++|...+++..+.
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH
Confidence 78888888888888888886554
No 70
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.69 E-value=2e-15 Score=133.80 Aligned_cols=218 Identities=9% Similarity=-0.058 Sum_probs=188.0
Q ss_pred CChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCCh-hHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHH
Q 016027 86 GRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNV-KDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAI 164 (396)
Q Consensus 86 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 164 (396)
+.++++++.++......+ .+...+..+...+...|++ ++|++.|++..+.... +..+|..+..+|...|++++|+
T Consensus 82 ~~~~~al~~l~~~~~~~~---~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~ 157 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSAQ---VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAH 157 (474)
T ss_dssp HHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHhccCc---hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHH
Confidence 447888888888766432 4788999999999999999 9999999999887533 6889999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhc--------
Q 016027 165 RLVKEMRKEGIEPNAIVYNTVIDGLVEA---------GRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKA-------- 227 (396)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------- 227 (396)
+.|++..+. .|+...+..+..++... |++++|+..++++.+..+. +...|..+..+|...
T Consensus 158 ~~~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~ 234 (474)
T 4abn_A 158 TCFSGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNP 234 (474)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhcccc
Confidence 999999987 46678889999999999 9999999999999997653 688899999999998
Q ss_pred CChHHHHHHHHHHHHCCCC--CChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 016027 228 GDLEGASKILKMMISRGFL--PSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQ 305 (396)
Q Consensus 228 ~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 305 (396)
|++++|...|++..+.... .+...+..+..+|...|++++|...|++..+.... +...+..+..++...|++++|..
T Consensus 235 g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~ 313 (474)
T 4abn_A 235 KISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLE 313 (474)
T ss_dssp HHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999987431 37889999999999999999999999999887533 66778888999999999999998
Q ss_pred HHHHHH
Q 016027 306 VSKEMK 311 (396)
Q Consensus 306 ~~~~~~ 311 (396)
.+.++.
T Consensus 314 ~~~~~~ 319 (474)
T 4abn_A 314 SKGKTK 319 (474)
T ss_dssp HTTTCC
T ss_pred Hhcccc
Confidence 776553
No 71
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.67 E-value=1.2e-15 Score=127.88 Aligned_cols=176 Identities=14% Similarity=0.079 Sum_probs=134.8
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHhhccccc---CCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhcc-----C
Q 016027 32 SKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVK---NFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELD-----Q 103 (396)
Q Consensus 32 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~ 103 (396)
...++..++..+...|++++|+.+|+++.+..... ..+....++..++..+...|++++|...++++.... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 36789999999999999999999999998842111 125567788999999999999999999999987652 1
Q ss_pred CCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhC------CC-CCChhHHHHHHHHHHccCCHHHHHHHHHHHHHc---
Q 016027 104 SWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKE------NV-TPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKE--- 173 (396)
Q Consensus 104 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--- 173 (396)
..+....++..+...+...|++++|...|+++.+. +. +....++..+...+...|++++|+++++++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 22334667888899999999999999999988764 11 223456777888888888999888888888764
Q ss_pred ---CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 016027 174 ---GI-EPNAIVYNTVIDGLVEAGRFEEVSGMMERFLV 207 (396)
Q Consensus 174 ---~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 207 (396)
+. +....++..+..++...|++++|...++++.+
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11 22344667777888888888888888888765
No 72
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.66 E-value=1.5e-12 Score=118.57 Aligned_cols=203 Identities=13% Similarity=0.014 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHcCCHHHHH-HHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCC---------CCCC--
Q 016027 181 VYNTVIDGLVEAGRFEEVS-GMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRG---------FLPS-- 248 (396)
Q Consensus 181 ~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------~~~~-- 248 (396)
.|...+..+...|+.++|. ++|++.....+ .+...|...+...-+.|+++.|.++|+.+.... ..|+
T Consensus 345 lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P-~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~ 423 (679)
T 4e6h_A 345 IWFNMANYQGEKNTDSTVITKYLKLGQQCIP-NSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNE 423 (679)
T ss_dssp HHHHHHHHHHHHSCCTTHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcch
Confidence 3333344444455555564 66666655432 344445555556666666666666666665421 0021
Q ss_pred ----------hhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCC
Q 016027 249 ----------PTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKE-DKLDLAIQVSKEMKCRGCDI 317 (396)
Q Consensus 249 ----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~ 317 (396)
..+|...+....+.|+.+.|..+|.++.+.........|...+..-.+. ++.+.|..+|+...+.- +-
T Consensus 424 ~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~-p~ 502 (679)
T 4e6h_A 424 SAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF-AT 502 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH-TT
T ss_pred hhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC-CC
Confidence 2245555555555666666666666665541111223333222222232 33666666666666542 22
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCchHHHHHHHHHhccch
Q 016027 318 DLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVP--HYLTFKRLNDEFKKRGMTALAQKLCNVMSSVPR 385 (396)
Q Consensus 318 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 385 (396)
+...+...+......|+.+.|..+|++.+.....+ ....|...+.--.+.|+.+.+.++.+++.+..+
T Consensus 503 ~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P 572 (679)
T 4e6h_A 503 DGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFP 572 (679)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHST
T ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 45555566666666666666666666666543211 224455555555666666666666666555433
No 73
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.65 E-value=1e-14 Score=134.24 Aligned_cols=166 Identities=14% Similarity=0.091 Sum_probs=150.9
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHH
Q 016027 32 SKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRV 111 (396)
Q Consensus 32 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 111 (396)
+..+|+.++.++.+.|++++|++.|+++.+.. |.+..++..++.+|.+.|++++|++.|+++.+.+|. +...
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-----P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~---~~~a 79 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-----PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT---FADA 79 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHH
Confidence 46799999999999999999999999999985 888999999999999999999999999999998765 7889
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 016027 112 YNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVE 191 (396)
Q Consensus 112 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 191 (396)
|..+..++.+.|++++|++.|++.++.... +..++..+..++...|++++|++.|++.++.. +-+...+..+..++..
T Consensus 80 ~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~ 157 (723)
T 4gyw_A 80 YSNMGNTLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQI 157 (723)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHh
Confidence 999999999999999999999999887543 78899999999999999999999999999874 4567889999999999
Q ss_pred cCCHHHHHHHHHHHHh
Q 016027 192 AGRFEEVSGMMERFLV 207 (396)
Q Consensus 192 ~~~~~~a~~~~~~~~~ 207 (396)
.|++++|.+.++++.+
T Consensus 158 ~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 158 VCDWTDYDERMKKLVS 173 (723)
T ss_dssp TTCCTTHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHH
Confidence 9999999998888765
No 74
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.64 E-value=7.3e-12 Score=114.14 Aligned_cols=362 Identities=9% Similarity=-0.011 Sum_probs=238.5
Q ss_pred chhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCC---
Q 016027 11 FDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGR--- 87 (396)
Q Consensus 11 ~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--- 87 (396)
..+-+..|++.+.. .|. +..+|..++..+.+.+.++.+..+|+++... +|.....|...+..-.+.++
T Consensus 48 ~~d~i~~lE~~l~~--np~--d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-----fP~~~~lW~~Yi~~E~~~~~~~~ 118 (679)
T 4e6h_A 48 ESDVIGKLNDMIEE--QPT--DIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-----FPLMANIWCMRLSLEFDKMEELD 118 (679)
T ss_dssp CSCHHHHHHHHHHH--CTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHTC--CCC
T ss_pred CHHHHHHHHHHHHH--CcC--CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHhhCCcch
Confidence 33444556676664 343 5778999999888888999999999988886 48888888888888888888
Q ss_pred hHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCCh--------hHHHHHHHHHHhC-CC-CCC-hhHHHHHHHHHHc
Q 016027 88 VKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNV--------KDAERFWLEMRKE-NV-TPN-VVTYGTLVEGYCR 156 (396)
Q Consensus 88 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--------~~a~~~~~~~~~~-~~-~~~-~~~~~~l~~~~~~ 156 (396)
++.+..+|+++....+ ..|++..|...+....+.++. +.+.++|+..+.. |. .++ ...|...+.....
T Consensus 119 ~~~v~~lfeRal~~~~-~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~ 197 (679)
T 4e6h_A 119 AAVIEPVLARCLSKEL-GNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEH 197 (679)
T ss_dssp HHHHHHHHHHHTCSSS-CCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHh
Confidence 8999999999887532 137888888877766665543 3344677766543 55 443 4567666655432
Q ss_pred ---------cCCHHHHHHHHHHHHHcCCCCCHHHHH--------------------------------------------
Q 016027 157 ---------LRRVDRAIRLVKEMRKEGIEPNAIVYN-------------------------------------------- 183 (396)
Q Consensus 157 ---------~~~~~~a~~~~~~~~~~~~~~~~~~~~-------------------------------------------- 183 (396)
.++.+.+.++|++++......-..+|.
T Consensus 198 ~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r 277 (679)
T 4e6h_A 198 WKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKR 277 (679)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCC
T ss_pred ccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhh
Confidence 334566777777766421111111111
Q ss_pred -----------------------------HHHHHHHHcC-------CHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhc
Q 016027 184 -----------------------------TVIDGLVEAG-------RFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKA 227 (396)
Q Consensus 184 -----------------------------~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 227 (396)
..+..-...+ ..+.+..+|++++...+ .....|...+..+...
T Consensus 278 ~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p-~~~~lW~~ya~~~~~~ 356 (679)
T 4e6h_A 278 NLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVC-FAPEIWFNMANYQGEK 356 (679)
T ss_dssp CCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHH
T ss_pred ccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHhc
Confidence 1111000000 01123344555544433 2455666666667778
Q ss_pred CChHHHH-HHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCC---------CCCC------------hh
Q 016027 228 GDLEGAS-KILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESG---------YTPD------------RL 285 (396)
Q Consensus 228 ~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------~~~~------------~~ 285 (396)
|+.++|. ++|+..... .+.+...+...+......|+++.|..+|+.+.... -.|+ ..
T Consensus 357 ~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~ 435 (679)
T 4e6h_A 357 NTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTY 435 (679)
T ss_dssp SCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHH
Confidence 8888896 999999875 34466667778888888999999999999887631 0131 23
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc-CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 016027 286 TYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRM-YKFDEASAEFEDMIRRGLVPHYLTFKRLNDEF 364 (396)
Q Consensus 286 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 364 (396)
+|...+....+.|+.+.|..+|.++.+.........|...+..-.+. ++.+.|.++|+..++. .+.+...|...+...
T Consensus 436 vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe 514 (679)
T 4e6h_A 436 VYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFL 514 (679)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHH
Confidence 57777777778899999999999998751222344554444444444 4589999999999885 344666777888888
Q ss_pred HHcCCchHHHHHHHHHhccch
Q 016027 365 KKRGMTALAQKLCNVMSSVPR 385 (396)
Q Consensus 365 ~~~g~~~~A~~~~~~~~~~~~ 385 (396)
...|+.+.|..+|++.....+
T Consensus 515 ~~~~~~~~AR~lferal~~~~ 535 (679)
T 4e6h_A 515 IYVNEESQVKSLFESSIDKIS 535 (679)
T ss_dssp HHHTCHHHHHHHHHHHTTTSS
T ss_pred HhCCCHHHHHHHHHHHHHhcC
Confidence 889999999999999766543
No 75
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.63 E-value=1.5e-13 Score=118.42 Aligned_cols=311 Identities=11% Similarity=-0.037 Sum_probs=196.7
Q ss_pred CchhHHHHHHHHH--HHcCChHHHHHHHHHHhhccCCCCCC--hHHHHHHHHHH--HhcCChhHHH---------HHHHH
Q 016027 70 SGASLFEILLDSL--CKQGRVKAASEYFHKRKELDQSWAPT--VRVYNILLNGW--FRSKNVKDAE---------RFWLE 134 (396)
Q Consensus 70 ~~~~~~~~l~~~~--~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~~~l~~~~--~~~~~~~~a~---------~~~~~ 134 (396)
++..+-..|-..| ...+++++|.++++++...-.....| ...|..++..- ...+.+..+. +.++.
T Consensus 8 ~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ 87 (378)
T 3q15_A 8 PSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLET 87 (378)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHH
Confidence 3444455555555 66777777777777765433232223 33333333321 1112222222 55555
Q ss_pred HHhCCCCCCh----hHHHHHHHHHHccCCHHHHHHHHHHHHHcCC-CC----CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 016027 135 MRKENVTPNV----VTYGTLVEGYCRLRRVDRAIRLVKEMRKEGI-EP----NAIVYNTVIDGLVEAGRFEEVSGMMERF 205 (396)
Q Consensus 135 ~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 205 (396)
+.....+.+. ..+......+...|++++|+..+++..+... .+ ...++..+..+|...|+++.|...+++.
T Consensus 88 i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~a 167 (378)
T 3q15_A 88 IETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQA 167 (378)
T ss_dssp HHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 4332111010 1223345556778888888888888775410 11 2346677788888889998888888887
Q ss_pred HhcCCC------CchhhHHHHHHHHHhcCChHHHHHHHHHHHHC----CCC-CChhhHHHHHHHHhccCCHHHHHHHHHH
Q 016027 206 LVCEPG------PTMVTYTSLVKGYCKAGDLEGASKILKMMISR----GFL-PSPTTYNYFFRYFSKFGKVEDAMNLYRK 274 (396)
Q Consensus 206 ~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 274 (396)
.+.... ....++..+..+|...|++++|...+.+..+. +.. ....++..+..+|...|++++|...+++
T Consensus 168 l~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~ 247 (378)
T 3q15_A 168 LDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQK 247 (378)
T ss_dssp HHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 653111 12456778888888899999999888887653 111 1234677788888899999999999988
Q ss_pred HHH-----CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----CChhhHHHHHHHHHhcCC---hhHHHHHH
Q 016027 275 MIE-----SGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCD----IDLDTSTMLIHLLCRMYK---FDEASAEF 342 (396)
Q Consensus 275 ~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~---~~~a~~~~ 342 (396)
..+ .... ...++..+..++.+.|++++|...+++..+.... .....+..+...+...++ +.+|+..+
T Consensus 248 al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~ 326 (378)
T 3q15_A 248 AAKVSREKVPDL-LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYF 326 (378)
T ss_dssp HHHHHHHHCGGG-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHhhCChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 876 3322 3667788888999999999999999998875221 123345556666777777 66777666
Q ss_pred HHHHHCCCCCC-HHHHHHHHHHHHHcCCchHHHHHHHHHhccc
Q 016027 343 EDMIRRGLVPH-YLTFKRLNDEFKKRGMTALAQKLCNVMSSVP 384 (396)
Q Consensus 343 ~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 384 (396)
++ .+..|+ ...+..+...|...|++++|...+++.....
T Consensus 327 ~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 327 EK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred Hh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 65 222233 3456678888999999999999999876543
No 76
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.62 E-value=5e-14 Score=129.74 Aligned_cols=169 Identities=14% Similarity=0.100 Sum_probs=153.8
Q ss_pred CCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHH
Q 016027 68 FDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTY 147 (396)
Q Consensus 68 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 147 (396)
.|.++.+++.++.+|.+.|++++|++.|+++.+.+|. +..+|+.+..++.+.|++++|+..|++.++.... +..+|
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~---~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~ 80 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE---FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAY 80 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHH
Confidence 4778899999999999999999999999999998766 7889999999999999999999999999987543 68899
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhc
Q 016027 148 GTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKA 227 (396)
Q Consensus 148 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 227 (396)
..+..++...|++++|++.|++.++.. +-+...+..+..++...|++++|+..|+++++..+. +...+..+..++...
T Consensus 81 ~nLg~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~ 158 (723)
T 4gyw_A 81 SNMGNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIV 158 (723)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhc
Confidence 999999999999999999999999874 556889999999999999999999999999997664 678899999999999
Q ss_pred CChHHHHHHHHHHHH
Q 016027 228 GDLEGASKILKMMIS 242 (396)
Q Consensus 228 ~~~~~a~~~~~~~~~ 242 (396)
|++++|.+.++++.+
T Consensus 159 g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 159 CDWTDYDERMKKLVS 173 (723)
T ss_dssp TCCTTHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHH
Confidence 999999999888765
No 77
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.62 E-value=1.2e-13 Score=106.19 Aligned_cols=166 Identities=17% Similarity=0.079 Sum_probs=125.7
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHH
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVY 112 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 112 (396)
...+..++..+...|++++|+..|+++.... |.+..++..++..+...|++++|.+.++++....|. +...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~ 79 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-----AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD---NVKVA 79 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---CHHHH
Confidence 4567778888888888888888888887753 667778888888888888888888888888776433 66777
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 016027 113 NILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEA 192 (396)
Q Consensus 113 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 192 (396)
..+...+...|++++|.+.++++.... +.+...+..+...+...|++++|...++++.+.. +.+...+..+..++...
T Consensus 80 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~ 157 (186)
T 3as5_A 80 TVLGLTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQM 157 (186)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHc
Confidence 778888888888888888888877663 2366677777777777888888888887777664 44566777777777777
Q ss_pred CCHHHHHHHHHHHHhc
Q 016027 193 GRFEEVSGMMERFLVC 208 (396)
Q Consensus 193 ~~~~~a~~~~~~~~~~ 208 (396)
|++++|...++++.+.
T Consensus 158 ~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 158 GRHEEALPHFKKANEL 173 (186)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHc
Confidence 7777777777777654
No 78
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.62 E-value=4.3e-15 Score=124.44 Aligned_cols=247 Identities=15% Similarity=0.113 Sum_probs=117.5
Q ss_pred ChHHHHHHHHHHHhcCChhHHHHHHHHHHhC-------CCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHc------C
Q 016027 108 TVRVYNILLNGWFRSKNVKDAERFWLEMRKE-------NVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKE------G 174 (396)
Q Consensus 108 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~ 174 (396)
+..++..+...+...|++++|..+|+++.+. ..+....++..+...+...|++++|...+++..+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4555666667777777777777777766552 11223445556666666666666666666665543 1
Q ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHH
Q 016027 175 I-EPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYN 253 (396)
Q Consensus 175 ~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 253 (396)
- +....++..+...+...|++++|...++++.+.... ......+.....+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~----------------------------~~~~~~~~~~~~~~ 157 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK----------------------------VLGKDHPDVAKQLN 157 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH----------------------------HHCTTCHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH----------------------------hcCCCChHHHHHHH
Confidence 1 112334445555555555555555555555442100 00000011222344
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHC------CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-------CCCC-
Q 016027 254 YFFRYFSKFGKVEDAMNLYRKMIES------GYTP-DRLTYHILLKILCKEDKLDLAIQVSKEMKCRG-------CDID- 318 (396)
Q Consensus 254 ~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~- 318 (396)
.+...+...|++++|..+++++.+. +..| ...++..+..++...|++++|...++++.+.. ..+.
T Consensus 158 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 237 (311)
T 3nf1_A 158 NLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDEN 237 (311)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcch
Confidence 4444444445555555444444332 1011 12334445555555555555555555554320 0111
Q ss_pred ------hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcc
Q 016027 319 ------LDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFKKRGMTALAQKLCNVMSSV 383 (396)
Q Consensus 319 ------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 383 (396)
...+..+...+...+.+.++...++...... +.+..++..+..+|.+.|++++|.+++++..+.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 238 KPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp CCHHHHHHHHHHC-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 1112222333444556666666666665532 334566778888888888888888888886554
No 79
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.62 E-value=2.6e-13 Score=116.98 Aligned_cols=310 Identities=10% Similarity=0.019 Sum_probs=211.3
Q ss_pred HHHHHHHHH--HHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHH--HHcCChHHHH---------HHHHHHhhc
Q 016027 35 TFVILIRRY--ARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSL--CKQGRVKAAS---------EYFHKRKEL 101 (396)
Q Consensus 35 ~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~A~---------~~~~~~~~~ 101 (396)
.-..+-..| ...+++++|..+++++.+.........+...|..++..- ...+.+..+. +.++.+...
T Consensus 12 v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~ 91 (378)
T 3q15_A 12 VGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETP 91 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhcc
Confidence 334444444 789999999999998876432111123333344444431 1123333333 666665432
Q ss_pred cCCCCCCh--HHHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CC----ChhHHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 016027 102 DQSWAPTV--RVYNILLNGWFRSKNVKDAERFWLEMRKENV-TP----NVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEG 174 (396)
Q Consensus 102 ~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 174 (396)
.....+.. ..+......+...|++++|+..|++..+... .+ ...++..+...|...|+++.|+..+++..+..
T Consensus 92 ~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~ 171 (378)
T 3q15_A 92 QKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIY 171 (378)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 11100111 1233455667789999999999999876411 12 24577889999999999999999999887631
Q ss_pred --C---C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----C-CCchhhHHHHHHHHHhcCChHHHHHHHHHHHH-
Q 016027 175 --I---E-PNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCE----P-GPTMVTYTSLVKGYCKAGDLEGASKILKMMIS- 242 (396)
Q Consensus 175 --~---~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~- 242 (396)
. . ....++..+..+|...|++++|...+++..+.. . .....++..+..+|...|++++|...+++..+
T Consensus 172 ~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~ 251 (378)
T 3q15_A 172 QNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKV 251 (378)
T ss_dssp HTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 1 1 124567788899999999999999999887631 1 11245778899999999999999999999887
Q ss_pred ----CCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCC----CCChhhHHHHHHHHHhcCC---HHHHHHHHHHHH
Q 016027 243 ----RGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGY----TPDRLTYHILLKILCKEDK---LDLAIQVSKEMK 311 (396)
Q Consensus 243 ----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~ 311 (396)
.... ...++..+...+...|++++|...+++..+... +.....+..+...+...++ +.+|...+++..
T Consensus 252 ~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~ 330 (378)
T 3q15_A 252 SREKVPDL-LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN 330 (378)
T ss_dssp HHHHCGGG-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT
T ss_pred HHhhCChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC
Confidence 4333 467888899999999999999999999877421 1123345666667777788 777777776632
Q ss_pred HcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 016027 312 CRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIR 347 (396)
Q Consensus 312 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 347 (396)
. .+.....+..+...|...|++++|...|++..+
T Consensus 331 ~--~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 331 L--HAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp C--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred C--hhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1 112335667889999999999999999998865
No 80
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.62 E-value=4.6e-13 Score=115.21 Aligned_cols=274 Identities=12% Similarity=0.051 Sum_probs=181.6
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCc-h----hHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCC-
Q 016027 34 DTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSG-A----SLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAP- 107 (396)
Q Consensus 34 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~- 107 (396)
..+...+..+...|++++|...++++.... +++ . .++..++..+...|++++|.+.++++....+....
T Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 89 (373)
T 1hz4_A 15 EFNALRAQVAINDGNPDEAERLAKLALEEL-----PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVW 89 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-----CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-----CCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcH
Confidence 345566778888999999999999988753 222 1 25677788888999999999999988765332111
Q ss_pred --ChHHHHHHHHHHHhcCChhHHHHHHHHHHhC----CCC--C-ChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC--
Q 016027 108 --TVRVYNILLNGWFRSKNVKDAERFWLEMRKE----NVT--P-NVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIE-- 176 (396)
Q Consensus 108 --~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-- 176 (396)
...++..+...+...|++++|...+++.... +.. | ...++..+...+...|++++|...+++..+....
T Consensus 90 ~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 169 (373)
T 1hz4_A 90 HYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQ 169 (373)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccC
Confidence 1233566778888899999999998887653 221 2 2345666778888889999999988888765311
Q ss_pred C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch-hhHH-----HHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 016027 177 P--NAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTM-VTYT-----SLVKGYCKAGDLEGASKILKMMISRGFLPS 248 (396)
Q Consensus 177 ~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 248 (396)
+ ....+..+...+...|++++|...+++.......++. ..+. ..+..+...|++++|...+.........+.
T Consensus 170 ~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 249 (373)
T 1hz4_A 170 PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANN 249 (373)
T ss_dssp GGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTC
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcc
Confidence 1 2345667777888888888888888887654222111 1111 233446678888888888887765432211
Q ss_pred ---hhhHHHHHHHHhccCCHHHHHHHHHHHHHC----CCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016027 249 ---PTTYNYFFRYFSKFGKVEDAMNLYRKMIES----GYTPDR-LTYHILLKILCKEDKLDLAIQVSKEMKC 312 (396)
Q Consensus 249 ---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 312 (396)
...+..+...+...|++++|...++..... +..++. ..+..+..++...|+.++|...+++...
T Consensus 250 ~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 250 HFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp GGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 123456667777778888888877776542 111122 2455556667777788777777777664
No 81
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.60 E-value=3.3e-13 Score=107.53 Aligned_cols=206 Identities=10% Similarity=-0.038 Sum_probs=160.1
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCC-CchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHH
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFD-SGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRV 111 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 111 (396)
+..+...+..+...|++++|+..|+++.... | ++..++..++.++...|++++|++.|+++...+|. +...
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~ 78 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLT-----NNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN---LANA 78 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-----TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS---HHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcc-----CCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc---hHHH
Confidence 6789999999999999999999999999975 5 78888888999999999999999999999987654 6788
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh-------hHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC--CHHHH
Q 016027 112 YNILLNGWFRSKNVKDAERFWLEMRKENVTPNV-------VTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEP--NAIVY 182 (396)
Q Consensus 112 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~ 182 (396)
|..+..++...|++++|+..|++..+..+. +. ..|..+...+...|++++|++.+++.++.. +. +...+
T Consensus 79 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~ 156 (228)
T 4i17_A 79 YIGKSAAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDAL 156 (228)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHH
Confidence 999999999999999999999999886432 44 457888888999999999999999998873 33 35677
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 016027 183 NTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFR 257 (396)
Q Consensus 183 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 257 (396)
..+..++...| ...++++...+. .+...|.... ....+.+++|...+++..+..+. +..+...+..
T Consensus 157 ~~l~~~~~~~~-----~~~~~~a~~~~~-~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~-~~~~~~~l~~ 222 (228)
T 4i17_A 157 YSLGVLFYNNG-----ADVLRKATPLAS-SNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPN-RTEIKQMQDQ 222 (228)
T ss_dssp HHHHHHHHHHH-----HHHHHHHGGGTT-TCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHH-----HHHHHHHHhccc-CCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCC-CHHHHHHHHH
Confidence 77777775544 444556555433 2344444333 33456689999999999987432 4444444433
No 82
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.60 E-value=1.5e-12 Score=112.00 Aligned_cols=307 Identities=11% Similarity=0.020 Sum_probs=212.4
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCC--hHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-CCh----
Q 016027 72 ASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPT--VRVYNILLNGWFRSKNVKDAERFWLEMRKENVT-PNV---- 144 (396)
Q Consensus 72 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~---- 144 (396)
..+.......+...|++++|...++++....+...+. ...++.+...+...|++++|...+++....... .+.
T Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 93 (373)
T 1hz4_A 14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL 93 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 3455667778888999999999999988764321111 125667778888999999999999988653111 122
Q ss_pred hHHHHHHHHHHccCCHHHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----c
Q 016027 145 VTYGTLVEGYCRLRRVDRAIRLVKEMRKE----GIE--P-NAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGP----T 213 (396)
Q Consensus 145 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~ 213 (396)
.++..+...+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++........ .
T Consensus 94 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 173 (373)
T 1hz4_A 94 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQ 173 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGG
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHH
Confidence 23567788889999999999999988764 221 2 23456667888999999999999999988754321 2
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hhHH-----HHHHHHhccCCHHHHHHHHHHHHHCCCCCC---h
Q 016027 214 MVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSP-TTYN-----YFFRYFSKFGKVEDAMNLYRKMIESGYTPD---R 284 (396)
Q Consensus 214 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~ 284 (396)
..++..+...+...|++++|...+++.......++. ..+. ..+..+...|++++|...+++.......+. .
T Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 253 (373)
T 1hz4_A 174 LQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQ 253 (373)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhH
Confidence 356777888899999999999999988754212111 1121 233447789999999999988776432211 2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 016027 285 LTYHILLKILCKEDKLDLAIQVSKEMKCR----GCDIDL-DTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKR 359 (396)
Q Consensus 285 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ 359 (396)
..+..+...+...|++++|...++++... +..++. ..+..+..++...|+.++|...+++...... . ..
T Consensus 254 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~--~----~g 327 (373)
T 1hz4_A 254 GQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN--R----TG 327 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH--H----HC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc--c----cc
Confidence 24567778888999999999999987653 211122 3566677888899999999999998876310 0 11
Q ss_pred HHHHHHHcCCchHHHHHHHHHhccchh
Q 016027 360 LNDEFKKRGMTALAQKLCNVMSSVPRS 386 (396)
Q Consensus 360 l~~~~~~~g~~~~A~~~~~~~~~~~~~ 386 (396)
.+..+...| +....+++.+....+.
T Consensus 328 ~~~~~~~~g--~~~~~ll~~~~~~~~~ 352 (373)
T 1hz4_A 328 FISHFVIEG--EAMAQQLRQLIQLNTL 352 (373)
T ss_dssp CCHHHHTTH--HHHHHHHHHHHHTTCS
T ss_pred HHHHHHHcc--HHHHHHHHHHHhCCCC
Confidence 223344555 6677777776665553
No 83
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.56 E-value=1e-12 Score=100.77 Aligned_cols=166 Identities=19% Similarity=0.115 Sum_probs=123.5
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHH
Q 016027 72 ASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLV 151 (396)
Q Consensus 72 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 151 (396)
...+..++..+...|++++|.+.++++....+. +...+..+...+...|++++|...++++.+.. +.+...+..+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a 83 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAF---DVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLG 83 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 455777788888888888888888887765433 66777888888888888888888888877663 23666777777
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChH
Q 016027 152 EGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLE 231 (396)
Q Consensus 152 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 231 (396)
..+...|++++|.+.++++.+.. +.+...+..+..++...|++++|...++++.+..+ .+...+..+...+...|+++
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~ 161 (186)
T 3as5_A 84 LTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP-NEGKVHRAIAFSYEQMGRHE 161 (186)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCHH
Confidence 78888888888888888777763 44666777777777778888888888877777644 35666777777777777777
Q ss_pred HHHHHHHHHHHC
Q 016027 232 GASKILKMMISR 243 (396)
Q Consensus 232 ~a~~~~~~~~~~ 243 (396)
+|...++.+.+.
T Consensus 162 ~A~~~~~~~~~~ 173 (186)
T 3as5_A 162 EALPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc
Confidence 777777776654
No 84
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.55 E-value=7.3e-13 Score=107.89 Aligned_cols=188 Identities=10% Similarity=0.015 Sum_probs=128.2
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCc---hhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCC
Q 016027 32 SKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSG---ASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPT 108 (396)
Q Consensus 32 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 108 (396)
+...+..++..+.+.|++++|+..|+++.... |.+ +.++..++.++...|++++|+..|+++....|..+..
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 88 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-----RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRV 88 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-----SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-----CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchh
Confidence 47789999999999999999999999999874 444 7889999999999999999999999999986654444
Q ss_pred hHHHHHHHHHHHh--------cCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHH
Q 016027 109 VRVYNILLNGWFR--------SKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAI 180 (396)
Q Consensus 109 ~~~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 180 (396)
...+..+..++.. .|++++|+..|+++++..+. +......+.... .+... ...
T Consensus 89 ~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~~--------------~~~~~----~~~ 149 (261)
T 3qky_A 89 PQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKIR--------------ELRAK----LAR 149 (261)
T ss_dssp HHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHHH--------------HHHHH----HHH
T ss_pred HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHHH--------------HHHHH----HHH
Confidence 6678888888988 99999999999999876422 333332221110 00000 011
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--chhhHHHHHHHHHhc----------CChHHHHHHHHHHHHC
Q 016027 181 VYNTVIDGLVEAGRFEEVSGMMERFLVCEPGP--TMVTYTSLVKGYCKA----------GDLEGASKILKMMISR 243 (396)
Q Consensus 181 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~ 243 (396)
.+..+..+|...|++++|+..|+++++..+.. ....+..+..+|... |++++|...++.+.+.
T Consensus 150 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 150 KQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 13444555666666666666666665543321 233455555555544 5566666666666654
No 85
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.55 E-value=2.8e-12 Score=102.12 Aligned_cols=208 Identities=13% Similarity=0.018 Sum_probs=161.2
Q ss_pred CCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHH
Q 016027 69 DSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYG 148 (396)
Q Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 148 (396)
+.++..+...+..+...|++++|++.|+++...+| +++...+..+..++...|++++|+..|++..+..+. +...+.
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~ 80 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTN--NQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYI 80 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccC--CCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHH
Confidence 45678899999999999999999999999998743 257778888999999999999999999999987543 677899
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--chhhHHH
Q 016027 149 TLVEGYCRLRRVDRAIRLVKEMRKEGIEPNA-------IVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGP--TMVTYTS 219 (396)
Q Consensus 149 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ 219 (396)
.+..++...|++++|+..+++..+.. +.+. ..+..+...+...|++++|+..|+++.+..+ . +...+..
T Consensus 81 ~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~ 158 (228)
T 4i17_A 81 GKSAAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTS-KKWKTDALYS 158 (228)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSC-HHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCC-CcccHHHHHH
Confidence 99999999999999999999999874 3344 4577888889999999999999999988643 2 3567777
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 016027 220 LVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHIL 290 (396)
Q Consensus 220 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 290 (396)
+..+|...| ...++.+...+.. +...+.... ....+.+++|...+++..+..+. +..+...+
T Consensus 159 l~~~~~~~~-----~~~~~~a~~~~~~-~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~-~~~~~~~l 220 (228)
T 4i17_A 159 LGVLFYNNG-----ADVLRKATPLASS-NKEKYASEK--AKADAAFKKAVDYLGEAVTLSPN-RTEIKQMQ 220 (228)
T ss_dssp HHHHHHHHH-----HHHHHHHGGGTTT-CHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHHHHHHH-----HHHHHHHHhcccC-CHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCC-CHHHHHHH
Confidence 887776544 4445565555322 444444433 33456789999999999987422 44444443
No 86
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.52 E-value=4.2e-13 Score=110.53 Aligned_cols=236 Identities=17% Similarity=0.118 Sum_probs=165.8
Q ss_pred hhhccCchhHHHHHHHHhCCC------CCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccc---cCCCCchhHH
Q 016027 5 LAKAKEFDSAWCLLLDKIGGH------EVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMV---KNFDSGASLF 75 (396)
Q Consensus 5 ~~~~g~~~~A~~~~~~~~~~~------~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~~~ 75 (396)
....|++++|+..|+++++.. ..|. ...++..++..+...|++++|+..|+++...... .+.+....++
T Consensus 11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 88 (283)
T 3edt_B 11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPD--VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATL 88 (283)
T ss_dssp --CCSCSSSHHHHHHHHHHHHHHHHCSSSHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHH--HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHH
Confidence 345688888888888887621 1222 3668999999999999999999999999876211 1225567789
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcc-----CCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhC------CCCC-C
Q 016027 76 EILLDSLCKQGRVKAASEYFHKRKELD-----QSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKE------NVTP-N 143 (396)
Q Consensus 76 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~ 143 (396)
..++..+...|++++|.+.|+++.... +..+....++..+...+...|++++|...|+++.+. +..| .
T Consensus 89 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 168 (283)
T 3edt_B 89 NNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNV 168 (283)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 999999999999999999999987652 112235678899999999999999999999998764 1122 3
Q ss_pred hhHHHHHHHHHHccCCHHHHHHHHHHHHHc-------CCCCC-HHHHHHHHHHHHHcCC------HHHHHHHHHHHHhcC
Q 016027 144 VVTYGTLVEGYCRLRRVDRAIRLVKEMRKE-------GIEPN-AIVYNTVIDGLVEAGR------FEEVSGMMERFLVCE 209 (396)
Q Consensus 144 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~-~~~~~~l~~~~~~~~~------~~~a~~~~~~~~~~~ 209 (396)
..++..+..++...|++++|..++++..+. ...+. ...+..+.......+. +..+...++.....
T Consensus 169 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 247 (283)
T 3edt_B 169 AKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD- 247 (283)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC-
Confidence 567888999999999999999999998764 11222 2233333333333222 23333333322211
Q ss_pred CCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 016027 210 PGPTMVTYTSLVKGYCKAGDLEGASKILKMMISR 243 (396)
Q Consensus 210 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 243 (396)
......++..+..+|...|++++|...+++..+.
T Consensus 248 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 248 SPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 1224567888999999999999999999988753
No 87
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.52 E-value=2e-12 Score=101.29 Aligned_cols=165 Identities=12% Similarity=0.051 Sum_probs=119.5
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHH----------------HHHHHHHcCChHHHHHHHH
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEI----------------LLDSLCKQGRVKAASEYFH 96 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~~~~~~A~~~~~ 96 (396)
...+...+..+...|++++|+..|+++.... |.++.++.. ++.+|...|++++|+..|+
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 78 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALN-----IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYK 78 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 5567788888999999999999999999875 667777777 8888888888888888888
Q ss_pred HHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCC--HHHHHHHHHHHHHcC
Q 016027 97 KRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRR--VDRAIRLVKEMRKEG 174 (396)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~ 174 (396)
++.+.+|. +...+..+..++...|++++|+..|++.++..+. +..++..+..++...|+ ...+...++....
T Consensus 79 ~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~-- 152 (208)
T 3urz_A 79 ELLQKAPN---NVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQEKKKLETDYKKLSS-- 152 (208)
T ss_dssp HHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--
T ss_pred HHHHHCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--
Confidence 88887655 6778888888888888888888888888876433 66777777777765543 3344445544431
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 016027 175 IEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVC 208 (396)
Q Consensus 175 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 208 (396)
..|....+.....++...|++++|+..|++.++.
T Consensus 153 ~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 153 PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 1222223344455566677888888888888774
No 88
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.51 E-value=2.9e-13 Score=111.45 Aligned_cols=235 Identities=11% Similarity=0.013 Sum_probs=166.6
Q ss_pred HHHcCCHHHHHHHHHHHhhcccc---cCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhcc-----CCCCCChHHHHH
Q 016027 43 YARAGMVEAAIWTFEFANNLDMV---KNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELD-----QSWAPTVRVYNI 114 (396)
Q Consensus 43 ~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~ 114 (396)
....|++++|+..|+++...-.. .+.|....++..++..+...|++++|...++++.... +..+....++..
T Consensus 11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 90 (283)
T 3edt_B 11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNN 90 (283)
T ss_dssp --CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 34677888888888877764211 1225567789999999999999999999999988652 222335678899
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhC------C-CCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHc------C-CCCCHH
Q 016027 115 LLNGWFRSKNVKDAERFWLEMRKE------N-VTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKE------G-IEPNAI 180 (396)
Q Consensus 115 l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~ 180 (396)
+...+...|++++|...|++.... . .+....++..+...+...|++++|..+++++.+. + .+....
T Consensus 91 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 170 (283)
T 3edt_B 91 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAK 170 (283)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 999999999999999999998764 1 1224567888999999999999999999998875 1 122356
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------CCC-chhhHHHHHHHHHhcCChHHHHH------HHHHHHHCCCC
Q 016027 181 VYNTVIDGLVEAGRFEEVSGMMERFLVCE-------PGP-TMVTYTSLVKGYCKAGDLEGASK------ILKMMISRGFL 246 (396)
Q Consensus 181 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~-~~~~~~~l~~~~~~~~~~~~a~~------~~~~~~~~~~~ 246 (396)
++..+..++...|++++|...++++.+.. ..+ ....+..+...+...+....+.. .+..... ..+
T Consensus 171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 249 (283)
T 3edt_B 171 TKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSP 249 (283)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCH
Confidence 78888999999999999999999987641 112 23344444444444333333222 2221111 112
Q ss_pred CChhhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 016027 247 PSPTTYNYFFRYFSKFGKVEDAMNLYRKMIES 278 (396)
Q Consensus 247 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 278 (396)
....++..+...|...|++++|..++++..+.
T Consensus 250 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 250 TVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 24567888999999999999999999988763
No 89
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.51 E-value=3.1e-13 Score=99.75 Aligned_cols=144 Identities=8% Similarity=-0.050 Sum_probs=112.4
Q ss_pred hhhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHH
Q 016027 3 KVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSL 82 (396)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 82 (396)
.++...|++++|+..+..+++. .|+ ....+..++.+|.+.|++++|++.|+++.+.. |.++.+|..++.+|
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~--~p~--~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-----p~~~~a~~~lg~~~ 75 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPS--PRQ--KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-----ERDPKAHRFLGLLY 75 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCS--HHH--HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHH
T ss_pred HHHHHcChHHHHHHHHHHhccc--Ccc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHH
Confidence 4567788999999988888874 343 24577888999999999999999999998875 78888999999999
Q ss_pred HHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHH-HHHHHhCCCCCChhHHHHHHHHHHccCC
Q 016027 83 CKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERF-WLEMRKENVTPNVVTYGTLVEGYCRLRR 159 (396)
Q Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 159 (396)
...|++++|+..|+++.+.+|. +..+|..+...+.+.|++++|.+. +++..+..+. +..+|......+...|+
T Consensus 76 ~~~~~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 76 ELEENTDKAVECYRRSVELNPT---QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCCC
T ss_pred HHcCchHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCc
Confidence 9999999999999998887665 678888888889889988776655 4777765433 56677766666666554
No 90
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.47 E-value=8.7e-13 Score=122.08 Aligned_cols=133 Identities=9% Similarity=-0.021 Sum_probs=62.3
Q ss_pred CCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHH
Q 016027 69 DSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYG 148 (396)
Q Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 148 (396)
|.+..++..++..+...|++++|++.|+++.+.+|. +...|..+..++...|++++|+..|++..+.... +...+.
T Consensus 430 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~ 505 (681)
T 2pzi_A 430 SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW---RWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPG-ELAPKL 505 (681)
T ss_dssp TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CSHHHH
T ss_pred ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHH
Confidence 334444444444444555555555555544444332 3444444444444455555555555444443221 334444
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 016027 149 TLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLV 207 (396)
Q Consensus 149 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 207 (396)
.+..++.+.|++++ ++.|++.++.. +.+...+..+..++.+.|++++|+..|+++.+
T Consensus 506 ~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 562 (681)
T 2pzi_A 506 ALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTLDEVPP 562 (681)
T ss_dssp HHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCT
T ss_pred HHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHHHhhcc
Confidence 44444445555554 44554444442 22344444444555555555555555554444
No 91
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.47 E-value=4.5e-12 Score=104.92 Aligned_cols=197 Identities=10% Similarity=-0.014 Sum_probs=108.9
Q ss_pred HHHHcCChHHHHHHHHHHhhccCCC--CC-ChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC---CC--ChhHHHHHHH
Q 016027 81 SLCKQGRVKAASEYFHKRKELDQSW--AP-TVRVYNILLNGWFRSKNVKDAERFWLEMRKENV---TP--NVVTYGTLVE 152 (396)
Q Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~ 152 (396)
.|...|++++|.+.|+++....+.. .+ ...+|+.+..+|.+.|++++|+..|++..+... .+ -..+++.+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455566666666666554432211 11 134566666666666666666666665543210 00 1345666666
Q ss_pred HHHcc-CCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch------hhHHHH
Q 016027 153 GYCRL-RRVDRAIRLVKEMRKEGIE-PN----AIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTM------VTYTSL 220 (396)
Q Consensus 153 ~~~~~-~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l 220 (396)
.|... |++++|+..|++.++.... .+ ..++..+...+.+.|++++|+..|+++.+..+.... ..+..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 77664 7777777777766553100 01 245666677777777777777777777765433221 145566
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCC-C---hhhHHHHHHHHh--ccCCHHHHHHHHHHHHH
Q 016027 221 VKGYCKAGDLEGASKILKMMISRGFLP-S---PTTYNYFFRYFS--KFGKVEDAMNLYRKMIE 277 (396)
Q Consensus 221 ~~~~~~~~~~~~a~~~~~~~~~~~~~~-~---~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~ 277 (396)
..++...|++++|...+++..+..+.. + ...+..++.++. ..+++++|+..|+.+..
T Consensus 206 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 667777777777777777766542110 1 112333444443 45567777777765543
No 92
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.47 E-value=1.7e-12 Score=101.61 Aligned_cols=168 Identities=13% Similarity=0.055 Sum_probs=133.0
Q ss_pred hhhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHH----------------HHHHHHHcCCHHHHHHHHHHHhhccccc
Q 016027 3 KVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVI----------------LIRRYARAGMVEAAIWTFEFANNLDMVK 66 (396)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~----------------l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 66 (396)
..+...|++++|+..|.++++. .|+ +..+|.. ++.++...|++++|+..|+++.+..
T Consensus 12 ~~~~~~g~~~~A~~~~~~al~~--~p~--~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--- 84 (208)
T 3urz_A 12 SAAIEAGQNGQAVSYFRQTIAL--NID--RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA--- 84 (208)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CHH--HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCC--ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC---
Confidence 3567899999999999999984 454 3567888 9999999999999999999999986
Q ss_pred CCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCC--hhHHHHHHHHHHhCCCCCCh
Q 016027 67 NFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKN--VKDAERFWLEMRKENVTPNV 144 (396)
Q Consensus 67 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~ 144 (396)
|.++.++..++.++...|++++|...|+++...+|. +..+|..+..++...|+ ...+...++.... ..|..
T Consensus 85 --p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~---~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 157 (208)
T 3urz_A 85 --PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD---NLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQ 157 (208)
T ss_dssp --TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHH
T ss_pred --CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchh
Confidence 888999999999999999999999999999998765 78899999988876654 4455666665542 23333
Q ss_pred hHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 016027 145 VTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVI 186 (396)
Q Consensus 145 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 186 (396)
..+.....++...|++++|+..|++.++. .|+......+.
T Consensus 158 ~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~~l~ 197 (208)
T 3urz_A 158 YARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQKTLD 197 (208)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHHHHHH
Confidence 44555666777789999999999999876 56765444433
No 93
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.46 E-value=7.8e-13 Score=97.57 Aligned_cols=146 Identities=14% Similarity=-0.003 Sum_probs=117.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHH
Q 016027 39 LIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNG 118 (396)
Q Consensus 39 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~ 118 (396)
|+.++...|++++|+..++.+.... |.++..+..++..|.+.|++++|++.|+++.+.+|. +..+|..+..+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~-----p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~---~~~a~~~lg~~ 74 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSP-----RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER---DPKAHRFLGLL 74 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSH-----HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccC-----cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHH
Confidence 5667778899999999999988864 666777888999999999999999999999988765 78899999999
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHH-HHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 016027 119 WFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRL-VKEMRKEGIEPNAIVYNTVIDGLVEAGR 194 (396)
Q Consensus 119 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 194 (396)
+.+.|++++|+..|++..+..+. +..++..+...+.+.|++++|.+. +++..+.. |-++.+|......+...|+
T Consensus 75 ~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 75 YELEENTDKAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred HHHcCchHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 99999999999999999887533 678888899999999988776654 57777763 4466777777776666664
No 94
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.45 E-value=1.2e-11 Score=100.76 Aligned_cols=216 Identities=11% Similarity=0.054 Sum_probs=153.4
Q ss_pred CCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-C-ChhH
Q 016027 69 DSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVT-P-NVVT 146 (396)
Q Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~ 146 (396)
+.++..+..++..+.+.|++++|...|+++....|..+.....+..+..++.+.|++++|+..|++..+..+. | ...+
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 6677888899999999999999999999999876553222678888999999999999999999999886321 1 2456
Q ss_pred HHHHHHHHHc--------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHH
Q 016027 147 YGTLVEGYCR--------LRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYT 218 (396)
Q Consensus 147 ~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 218 (396)
+..+..++.. .|++++|+..|+++++.. +.+......+.. +..+.. .....+.
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~--------------~~~~~~----~~~~~~~ 152 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQK--------------IRELRA----KLARKQY 152 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHH--------------HHHHHH----HHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHH--------------HHHHHH----HHHHHHH
Confidence 7778888888 899999999999988873 222222222111 111110 0112356
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCC--ChhhHHHHHHHHhcc----------CCHHHHHHHHHHHHHCCCCCC--h
Q 016027 219 SLVKGYCKAGDLEGASKILKMMISRGFLP--SPTTYNYFFRYFSKF----------GKVEDAMNLYRKMIESGYTPD--R 284 (396)
Q Consensus 219 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~~~~~--~ 284 (396)
.+..+|.+.|++++|+..|+.+.+..+.. ....+..+..+|... |++++|...|+++.+..+... .
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 232 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLR 232 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHH
Confidence 78889999999999999999998864321 245677788888766 899999999999988642211 2
Q ss_pred hhHHHHHHHHHhcCCHHHH
Q 016027 285 LTYHILLKILCKEDKLDLA 303 (396)
Q Consensus 285 ~~~~~l~~~~~~~~~~~~a 303 (396)
.....+...+...++++++
T Consensus 233 ~a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 233 TAEELYTRARQRLTELEGD 251 (261)
T ss_dssp HHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHhhhh
Confidence 3445555556665555543
No 95
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.45 E-value=2.3e-11 Score=96.46 Aligned_cols=192 Identities=13% Similarity=0.022 Sum_probs=129.8
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHH
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVY 112 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 112 (396)
...+..++..+.+.|++++|+..|+++....+ ..+....++..++.++.+.|++++|+..|+++.+..|....-...+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p--~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~ 81 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYP--FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHH
Confidence 55788888999999999999999999988631 1122346788889999999999999999999988766532222345
Q ss_pred HHHHHHHHh------------------cCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 016027 113 NILLNGWFR------------------SKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEG 174 (396)
Q Consensus 113 ~~l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 174 (396)
..+..++.. .|++++|...|+++++..+. +...+....... .+...+
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l~----------~~~~~~---- 146 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRLV----------FLKDRL---- 146 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHHH----------HHHHHH----
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHHH----------HHHHHH----
Confidence 555555544 45667777777776665221 222222111100 000000
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc--hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 016027 175 IEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPT--MVTYTSLVKGYCKAGDLEGASKILKMMISRGF 245 (396)
Q Consensus 175 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 245 (396)
......+...+.+.|++++|+..|+++++..+... ...+..+..++.+.|++++|.+.++.+...++
T Consensus 147 ----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 147 ----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred ----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 01123456778899999999999999988755422 35678889999999999999999998888743
No 96
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.45 E-value=3e-12 Score=118.50 Aligned_cols=185 Identities=10% Similarity=-0.057 Sum_probs=151.6
Q ss_pred CCchhHHHHHHHHHHHcCChHHHHHHHHHHh--------hccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 016027 69 DSGASLFEILLDSLCKQGRVKAASEYFHKRK--------ELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENV 140 (396)
Q Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--------~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 140 (396)
|.++..+.... ...|++++|++.++++. ..+|. +...+..+...+...|++++|+..|+++.+...
T Consensus 391 p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~---~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p 464 (681)
T 2pzi_A 391 PTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSE---SVELPLMEVRALLDLGDVAKATRKLDDLAERVG 464 (681)
T ss_dssp TTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTT---CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred CCCcchHHhhc---ccccCHHHHHHHHHHhhhhccccccccccc---chhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc
Confidence 55555555555 67899999999999988 65443 778899999999999999999999999988754
Q ss_pred CCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHH
Q 016027 141 TPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSL 220 (396)
Q Consensus 141 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 220 (396)
. +...|..+..++...|++++|++.|++.++.. +.+...+..+..++.+.|++++ +..|+++.+.++. +...|..+
T Consensus 465 ~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~l 540 (681)
T 2pzi_A 465 W-RWRLVWYRAVAELLTGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGL 540 (681)
T ss_dssp C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHH
T ss_pred c-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHH
Confidence 3 77899999999999999999999999999874 4567888899999999999999 9999999987664 67889999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCC
Q 016027 221 VKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGK 264 (396)
Q Consensus 221 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 264 (396)
..++.+.|++++|...|++..+.+.. +...+..+..++...+.
T Consensus 541 g~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 541 ARARSAEGDRVGAVRTLDEVPPTSRH-FTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHTTCHHHHHHHHHTSCTTSTT-HHHHHHHHHHHTC----
T ss_pred HHHHHHcCCHHHHHHHHHhhcccCcc-cHHHHHHHHHHHHccCC
Confidence 99999999999999999999886422 46677778888766555
No 97
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.44 E-value=5e-12 Score=104.61 Aligned_cols=215 Identities=9% Similarity=-0.041 Sum_probs=153.3
Q ss_pred CchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCC-chhHHHHHHHHHHHcCCh
Q 016027 10 EFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDS-GASLFEILLDSLCKQGRV 88 (396)
Q Consensus 10 ~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 88 (396)
++++|...|.++ +..|...|++++|+..|+++.......+.++ ...++..++.+|...|++
T Consensus 32 ~~~~A~~~~~~a------------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~ 93 (292)
T 1qqe_A 32 KFEEAADLCVQA------------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNS 93 (292)
T ss_dssp HHHHHHHHHHHH------------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cHHHHHHHHHHH------------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCH
Confidence 477776666554 5567888999999999998887644333344 467889999999999999
Q ss_pred HHHHHHHHHHhhccCCCCC---ChHHHHHHHHHHHhc-CChhHHHHHHHHHHhCCCCC-C----hhHHHHHHHHHHccCC
Q 016027 89 KAASEYFHKRKELDQSWAP---TVRVYNILLNGWFRS-KNVKDAERFWLEMRKENVTP-N----VVTYGTLVEGYCRLRR 159 (396)
Q Consensus 89 ~~A~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~~~ 159 (396)
++|+..|+++....+.... ...+++.+...|... |++++|+..|++..+..... + ..++..+...+...|+
T Consensus 94 ~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~ 173 (292)
T 1qqe_A 94 VNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQ 173 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCC
Confidence 9999999988766543211 245788889999986 99999999999887642110 1 3568888999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc----hhhHHHHHHHHH--hc
Q 016027 160 VDRAIRLVKEMRKEGIEPNA------IVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPT----MVTYTSLVKGYC--KA 227 (396)
Q Consensus 160 ~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~--~~ 227 (396)
+++|+..|++..+....... ..+..+..++...|++++|...|++..+..+... ...+..++.++. ..
T Consensus 174 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~ 253 (292)
T 1qqe_A 174 YIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDS 253 (292)
T ss_dssp HHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCH
Confidence 99999999998886422221 1567778888899999999999999887533211 113444556664 34
Q ss_pred CChHHHHHHHHHHHH
Q 016027 228 GDLEGASKILKMMIS 242 (396)
Q Consensus 228 ~~~~~a~~~~~~~~~ 242 (396)
+++++|+..|+.+..
T Consensus 254 ~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 254 EQLSEHCKEFDNFMR 268 (292)
T ss_dssp TTHHHHHHHHTTSSC
T ss_pred HHHHHHHHHhccCCc
Confidence 567888888776654
No 98
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.42 E-value=4e-12 Score=96.70 Aligned_cols=164 Identities=14% Similarity=0.083 Sum_probs=122.0
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHH
Q 016027 34 DTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYN 113 (396)
Q Consensus 34 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 113 (396)
..+...+..+.+.|++++|+..|+++.+.. |.++.++..++.++...|++++|+..|+++...+| +...+.
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-----P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p----~~~~~~ 77 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDEL-----QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ----DNSYKS 77 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHH-----HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC----CHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC----ChHHHH
Confidence 357778888888999999999999888875 77788888888999999999999999988876643 333333
Q ss_pred HHHHH-HHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHH
Q 016027 114 ILLNG-WFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEP-NAIVYNTVIDGLVE 191 (396)
Q Consensus 114 ~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 191 (396)
.+... +...++...|+..+++..+..+. +...+..+..++...|++++|+..|+++.+....+ +...+..+..++..
T Consensus 78 ~~~~~~~~~~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~ 156 (176)
T 2r5s_A 78 LIAKLELHQQAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSA 156 (176)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHH
Confidence 22222 22333344578888888776433 67788888888888999999999998888774222 35577888888888
Q ss_pred cCCHHHHHHHHHHHHh
Q 016027 192 AGRFEEVSGMMERFLV 207 (396)
Q Consensus 192 ~~~~~~a~~~~~~~~~ 207 (396)
.|+.++|...|++.+.
T Consensus 157 ~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 157 LGQGNAIASKYRRQLY 172 (176)
T ss_dssp HCSSCHHHHHHHHHHH
T ss_pred hCCCCcHHHHHHHHHH
Confidence 8998888888887654
No 99
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.40 E-value=4e-11 Score=86.50 Aligned_cols=130 Identities=22% Similarity=0.288 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHH
Q 016027 35 TFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNI 114 (396)
Q Consensus 35 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 114 (396)
+|..++..+...|++++|+.+|+++.+.. |.+..++..++..+...|++++|..+++++....+. +...+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~ 74 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-----PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR---SAEAWYN 74 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-----CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC---chHHHHH
Confidence 56777778888888888888888777653 556677777777787888888888888877765432 5566777
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 016027 115 LLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKE 173 (396)
Q Consensus 115 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 173 (396)
+...+...|++++|...++++..... .+...+..+...+...|++++|...++++.+.
T Consensus 75 l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 75 LGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 77777777777777777777766532 25566666777777777777777777776654
No 100
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.40 E-value=9.5e-10 Score=90.24 Aligned_cols=228 Identities=10% Similarity=0.013 Sum_probs=170.4
Q ss_pred HHHHHHHcCCH-HHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcC--ChHHHHHHHHHHhhccCCCCCChHHHHHH
Q 016027 39 LIRRYARAGMV-EAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQG--RVKAASEYFHKRKELDQSWAPTVRVYNIL 115 (396)
Q Consensus 39 l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 115 (396)
.+.+..+.|.. ++|++++++++..+ |.+..+|+.-..++...| +++++++.++.+...+|. +..+|+.-
T Consensus 38 ~~~a~~~~~e~s~~aL~~t~~~L~~n-----P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk---~y~aW~~R 109 (306)
T 3dra_A 38 LLLALMKAEEYSERALHITELGINEL-----ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK---NYQIWNYR 109 (306)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT---CCHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHC-----cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc---cHHHHHHH
Confidence 33444455555 68999999999986 888888999999998888 999999999999987665 66677765
Q ss_pred HHHH----Hhc---CChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHH--HHHHHHHHHHHcCCCCCHHHHHHHH
Q 016027 116 LNGW----FRS---KNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVD--RAIRLVKEMRKEGIEPNAIVYNTVI 186 (396)
Q Consensus 116 ~~~~----~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~ 186 (396)
...+ ... +++++++.+++++.+...+ +..+|+.-..++.+.|.++ ++++.++.+++.. +-|...|+...
T Consensus 110 ~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~ 187 (306)
T 3dra_A 110 QLIIGQIMELNNNDFDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRF 187 (306)
T ss_dssp HHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHhccccCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 5555 444 7888999999999887544 7788888777777788877 8888888888875 45667777666
Q ss_pred HHHHHcCC------HHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHH-HHHHHHHHHHCC--CCCChhhHHHHHH
Q 016027 187 DGLVEAGR------FEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEG-ASKILKMMISRG--FLPSPTTYNYFFR 257 (396)
Q Consensus 187 ~~~~~~~~------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~--~~~~~~~~~~l~~ 257 (396)
.++...+. ++++++.+++++...+. +...|+.+...+.+.|+... +..+..++.+.+ .+.++..+..++.
T Consensus 188 ~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~ 266 (306)
T 3dra_A 188 FLLFSKKHLATDNTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAK 266 (306)
T ss_dssp HHHHSSGGGCCHHHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHH
T ss_pred HHHHhccccchhhhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHH
Confidence 66666666 78888888888887663 77788888777777777443 445555554432 1236667777777
Q ss_pred HHhccCCHHHHHHHHHHHHH
Q 016027 258 YFSKFGKVEDAMNLYRKMIE 277 (396)
Q Consensus 258 ~~~~~~~~~~a~~~~~~~~~ 277 (396)
++.+.|+.++|.++++.+.+
T Consensus 267 ~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 267 IYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHccCCHHHHHHHHHHHHh
Confidence 77777888888888887765
No 101
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.39 E-value=2.4e-09 Score=94.80 Aligned_cols=347 Identities=12% Similarity=0.004 Sum_probs=212.6
Q ss_pred cCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCC-HHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHH----
Q 016027 9 KEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGM-VEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLC---- 83 (396)
Q Consensus 9 g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---- 83 (396)
|+++.|..+|++++.. .|+ ...|...+....+.|. .+....+|+.+...-. ..+.+..+|...+..+.
T Consensus 28 ~~~e~~~~iferal~~--~ps---~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg--~d~~s~~iW~~Yi~f~~~~~~ 100 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK--SYN---LDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFE--NYWDSYGLYKEYIEEEGKIED 100 (493)
T ss_dssp TCHHHHHHHHHHHSTT--CCC---HHHHHHHHHHHHHHC----CTHHHHHHHHHHST--TCTTCHHHHHHHHHHTSSCSS
T ss_pred CCHHHHHHHHHHHhcc--CCC---HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcC--CCcccHHHHHHHHHHHHhchh
Confidence 6788888888888874 344 7788888887777663 3556777777776421 12456677777777654
Q ss_pred HcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhc-------------CChhHHHHHHHHHHhCCCCCChhHHHHH
Q 016027 84 KQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRS-------------KNVKDAERFWLEMRKENVTPNVVTYGTL 150 (396)
Q Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l 150 (396)
..++.+.+.++|+++... |. ..-...|......-... +.+..|..+++.+...-...+...|...
T Consensus 101 ~~~~~~~vR~iy~rAL~~-P~-~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y 178 (493)
T 2uy1_A 101 EQTRIEKIRNGYMRALQT-PM-GSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARL 178 (493)
T ss_dssp HHHHHHHHHHHHHHHHTS-CC-TTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhC-hh-hhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 345677888888888764 21 11122333333221111 1233344444444321001133355555
Q ss_pred HHHHHccC--C-----HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHH
Q 016027 151 VEGYCRLR--R-----VDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKG 223 (396)
Q Consensus 151 ~~~~~~~~--~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 223 (396)
+..-...+ - .+.+..+|++++... +.+...|...+..+.+.|+.+.|..++++.... + .+...+. .
T Consensus 179 ~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P-~~~~l~~----~ 251 (493)
T 2uy1_A 179 IDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-S-DGMFLSL----Y 251 (493)
T ss_dssp HHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-CSSHHHH----H
T ss_pred HHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-C-CcHHHHH----H
Confidence 54432211 0 345677888888763 556778888888888899999999999999987 3 2333332 2
Q ss_pred HHhcCChHHHHHHHHHHHHCC------------CCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 016027 224 YCKAGDLEGASKILKMMISRG------------FLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILL 291 (396)
Q Consensus 224 ~~~~~~~~~a~~~~~~~~~~~------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 291 (396)
|....+.++. ++.+.+.- .......|...+....+.++.+.|..+|.++ .. ...+...|...+
T Consensus 252 y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A 326 (493)
T 2uy1_A 252 YGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCA 326 (493)
T ss_dssp HHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHH
T ss_pred HHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHH
Confidence 2222222222 22222110 0111245666667776778899999999998 32 123444454333
Q ss_pred HHHHhc-CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCc
Q 016027 292 KILCKE-DKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFKKRGMT 370 (396)
Q Consensus 292 ~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 370 (396)
..-... ++.+.|..+|+...+..+. ++..+...+......|+.+.|..+|+++. .....|...+.--...|+.
T Consensus 327 ~lE~~~~~d~~~ar~ife~al~~~~~-~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~ 400 (493)
T 2uy1_A 327 FIEYYATGSRATPYNIFSSGLLKHPD-STLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSM 400 (493)
T ss_dssp HHHHHHHCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHCCChHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCH
Confidence 322233 3699999999999886432 45667777888888999999999999872 2567788888777788999
Q ss_pred hHHHHHHHHHhc
Q 016027 371 ALAQKLCNVMSS 382 (396)
Q Consensus 371 ~~A~~~~~~~~~ 382 (396)
+.+.+++++...
T Consensus 401 ~~~r~v~~~~~~ 412 (493)
T 2uy1_A 401 ELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999998888653
No 102
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.39 E-value=6.5e-10 Score=91.22 Aligned_cols=238 Identities=10% Similarity=0.021 Sum_probs=191.4
Q ss_pred hhhccCc-hhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcC--CHHHHHHHHHHHhhcccccCCCCchhHHHHHHHH
Q 016027 5 LAKAKEF-DSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAG--MVEAAIWTFEFANNLDMVKNFDSGASLFEILLDS 81 (396)
Q Consensus 5 ~~~~g~~-~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 81 (396)
..+.|.+ ++|+.++..++.. .|+ ...+|+.-..++...| ++++++++++.+.... |.+..+|+.-..+
T Consensus 42 ~~~~~e~s~~aL~~t~~~L~~--nP~--~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-----Pk~y~aW~~R~~i 112 (306)
T 3dra_A 42 LMKAEEYSERALHITELGINE--LAS--HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-----EKNYQIWNYRQLI 112 (306)
T ss_dssp HHHTTCCSHHHHHHHHHHHHH--CTT--CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-----TTCCHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHH--CcH--HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-----cccHHHHHHHHHH
Confidence 3445555 6899999999984 566 3669999999999999 9999999999999975 8888899888777
Q ss_pred H----HHc---CChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChh--HHHHHHHHHHhCCCCCChhHHHHHHH
Q 016027 82 L----CKQ---GRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVK--DAERFWLEMRKENVTPNVVTYGTLVE 152 (396)
Q Consensus 82 ~----~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~ 152 (396)
+ ... +++++++++++++...+|. +..+|+.-.-.+.+.|+++ ++++.++++++..+. |..+|+.-..
T Consensus 113 L~~~~~~l~~~~~~~~EL~~~~~~l~~~pk---ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ 188 (306)
T 3dra_A 113 IGQIMELNNNDFDPYREFDILEAMLSSDPK---NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFF 188 (306)
T ss_dssp HHHHHHHTTTCCCTHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHhccccCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 7 666 7899999999999998665 8889998888888889988 999999999998655 8888988877
Q ss_pred HHHccCC------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHhcC--CCCchhhHHHHHHH
Q 016027 153 GYCRLRR------VDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEE-VSGMMERFLVCE--PGPTMVTYTSLVKG 223 (396)
Q Consensus 153 ~~~~~~~------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~--~~~~~~~~~~l~~~ 223 (396)
.....+. ++++++.++.++... +-|...|+.+...+.+.|+... +..+..++...+ ...+...+..++.+
T Consensus 189 ll~~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~ 267 (306)
T 3dra_A 189 LLFSKKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKI 267 (306)
T ss_dssp HHHSSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHH
T ss_pred HHHhccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHH
Confidence 7777776 899999999999885 6688888888888888887444 556777666543 12467888999999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCChhhHHHHH
Q 016027 224 YCKAGDLEGASKILKMMISRGFLPSPTTYNYFF 256 (396)
Q Consensus 224 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 256 (396)
|.+.|+.++|.++++.+.+.--+.....|+..+
T Consensus 268 ~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~ 300 (306)
T 3dra_A 268 YTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQI 300 (306)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHccCCHHHHHHHHHHHHhccChHHHHHHHHHH
Confidence 999999999999999998741122444444433
No 103
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.38 E-value=1.3e-10 Score=94.30 Aligned_cols=244 Identities=7% Similarity=-0.005 Sum_probs=165.0
Q ss_pred HHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccC
Q 016027 79 LDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLR 158 (396)
Q Consensus 79 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 158 (396)
++-..-.|++..++.-. .+..+. . ....-.-+.++++..|++... ....|....+..+...+ ..+
T Consensus 20 ikn~fy~G~yq~~i~e~---~~~~~~-~-~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~ 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEI---EKFSKV-T-DNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHH---HTSSCC-C-CHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT
T ss_pred HHHHHHhhHHHHHHHHH---HhcCcc-c-hHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc
Confidence 34455679998888743 333221 1 223333455778888887742 12334444555444443 322
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCchhhHHHHHHHHHhcCChHHHHHHH
Q 016027 159 RVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEP-GPTMVTYTSLVKGYCKAGDLEGASKIL 237 (396)
Q Consensus 159 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~ 237 (396)
|+..++++.+.+ .++..++..+..++...|++++|++++.+.+..++ .-+...+..++..+.+.|+.+.|.+.+
T Consensus 85 ----a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l 159 (310)
T 3mv2_B 85 ----NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIF 159 (310)
T ss_dssp ----CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ----HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 677888777665 45566666788889999999999999999877654 236778888889999999999999999
Q ss_pred HHHHHCCCCC-----ChhhHHHHHHHH--hc--cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 016027 238 KMMISRGFLP-----SPTTYNYFFRYF--SK--FGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSK 308 (396)
Q Consensus 238 ~~~~~~~~~~-----~~~~~~~l~~~~--~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 308 (396)
+.|.+. .| +..+...++.++ .. .+++.+|..+|+++.+. .|+..+...++.++.+.|++++|...++
T Consensus 160 ~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~ 235 (310)
T 3mv2_B 160 DNYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVE 235 (310)
T ss_dssp HHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHH
Confidence 999875 44 345556666553 22 33889999999998665 3453333444448888999999999998
Q ss_pred HHHHcC---------CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 016027 309 EMKCRG---------CDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRR 348 (396)
Q Consensus 309 ~~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 348 (396)
.+.+.. -+-++.+...+|......|+ +|.++++++.+.
T Consensus 236 ~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 236 LLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred HHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 766531 02366777666666666776 888899888875
No 104
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.38 E-value=5.3e-10 Score=90.82 Aligned_cols=246 Identities=9% Similarity=0.031 Sum_probs=171.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHH
Q 016027 40 IRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGW 119 (396)
Q Consensus 40 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 119 (396)
++-..-.|++..++.-..++... .+ ......+.++|...|++... . ...|....+..+...+
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~~~------~~-~~~~~~~~Rs~iAlg~~~~~---------~--~~~~~~~a~~~la~~~ 81 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFSKV------TD-NTLLFYKAKTLLALGQYQSQ---------D--PTSKLGKVLDLYVQFL 81 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSSCC------CC-HHHHHHHHHHHHHTTCCCCC---------C--SSSTTHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHhcCcc------ch-HHHHHHHHHHHHHcCCCccC---------C--CCCHHHHHHHHHHHHh
Confidence 45566789999888743322211 22 23455577899999988742 1 2234544555554443
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHcCCHHHH
Q 016027 120 FRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGI-EPNAIVYNTVIDGLVEAGRFEEV 198 (396)
Q Consensus 120 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a 198 (396)
..+ |+..|+++...+ .++..++..+..++...|++++|++++.+.+..+. .-+...+...+..+.+.|+.+.|
T Consensus 82 -~~~----a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A 155 (310)
T 3mv2_B 82 -DTK----NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTA 155 (310)
T ss_dssp -TTT----CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHH
T ss_pred -ccc----HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHH
Confidence 322 788888887765 45666667888999999999999999999877652 23667778888999999999999
Q ss_pred HHHHHHHHhcCCCC-----chhhHHHHHHHH--HhcC--ChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHH
Q 016027 199 SGMMERFLVCEPGP-----TMVTYTSLVKGY--CKAG--DLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAM 269 (396)
Q Consensus 199 ~~~~~~~~~~~~~~-----~~~~~~~l~~~~--~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 269 (396)
.+.+++|.+. .| +..+...++.++ ...| ++.+|..+|+++.+. .|+..+...++.++...|++++|.
T Consensus 156 ~k~l~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe 231 (310)
T 3mv2_B 156 STIFDNYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQ 231 (310)
T ss_dssp HHHHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHH
Confidence 9999999875 34 355556666553 3334 899999999998765 345334444555888999999999
Q ss_pred HHHHHHHHCC---------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 016027 270 NLYRKMIESG---------YTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGC 315 (396)
Q Consensus 270 ~~~~~~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 315 (396)
+.++.+.+.. -+-++.++..++......|+ +|.++++++....+
T Consensus 232 ~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P 284 (310)
T 3mv2_B 232 GIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDH 284 (310)
T ss_dssp HHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTC
T ss_pred HHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCC
Confidence 9999766531 02356666566666666786 88999999998753
No 105
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.38 E-value=2.3e-11 Score=92.43 Aligned_cols=165 Identities=11% Similarity=0.026 Sum_probs=124.7
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHH
Q 016027 72 ASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLV 151 (396)
Q Consensus 72 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 151 (396)
...+..++..+...|++++|...|+++...+|+ +...+..+...+...|++++|+..|++..... |+...+..+.
T Consensus 6 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~---~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~ 80 (176)
T 2r5s_A 6 DEQLLKQVSELLQQGEHAQALNVIQTLSDELQS---RGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIA 80 (176)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHT---SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHH
Confidence 345677888999999999999999999887665 78889999999999999999999999887653 3444333322
Q ss_pred HH-HHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-chhhHHHHHHHHHhcCC
Q 016027 152 EG-YCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGP-TMVTYTSLVKGYCKAGD 229 (396)
Q Consensus 152 ~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 229 (396)
.. +...+....|+..+++..+.. +.+...+..+..++...|++++|...|+++.+..+.+ +...+..+..++...|+
T Consensus 81 ~~~~~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 159 (176)
T 2r5s_A 81 KLELHQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQ 159 (176)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCS
T ss_pred HHHHHhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCC
Confidence 22 122233345678888887763 4467788888888888999999999998888866543 35678888888888888
Q ss_pred hHHHHHHHHHHHH
Q 016027 230 LEGASKILKMMIS 242 (396)
Q Consensus 230 ~~~a~~~~~~~~~ 242 (396)
.++|...|++...
T Consensus 160 ~~~A~~~y~~al~ 172 (176)
T 2r5s_A 160 GNAIASKYRRQLY 172 (176)
T ss_dssp SCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHH
Confidence 8888888877653
No 106
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.38 E-value=1.3e-10 Score=92.06 Aligned_cols=190 Identities=7% Similarity=-0.041 Sum_probs=128.9
Q ss_pred chhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh--hHHH
Q 016027 71 GASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNV--VTYG 148 (396)
Q Consensus 71 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~ 148 (396)
++..+..++..+...|++++|+..|+++....|..+.....+..++.++.+.|++++|+..|+++.+..+.... .++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 34567778899999999999999999999876553333567888999999999999999999999886433111 2444
Q ss_pred HHHHHHHc------------------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 016027 149 TLVEGYCR------------------LRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEP 210 (396)
Q Consensus 149 ~l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 210 (396)
.+..++.. .|++++|+..|+++++.. +-+........... .+...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l~----------~~~~~~----- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRLV----------FLKDRL----- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHHH----------HHHHHH-----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHH----------HHHHHH-----
Confidence 45555543 345566666666665542 11111111111000 000000
Q ss_pred CCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC--ChhhHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 016027 211 GPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLP--SPTTYNYFFRYFSKFGKVEDAMNLYRKMIESG 279 (396)
Q Consensus 211 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 279 (396)
......+...|.+.|++++|...|+.+.+..+.. ....+..+..++.+.|++++|.+.++.+...+
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 0112356778999999999999999999874221 12568889999999999999999999988874
No 107
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.38 E-value=2.1e-11 Score=110.96 Aligned_cols=154 Identities=12% Similarity=0.027 Sum_probs=122.9
Q ss_pred ccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCC
Q 016027 8 AKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGR 87 (396)
Q Consensus 8 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 87 (396)
.|++++|+..|+++++. .|+ +..++..++..+...|++++|++.|+++.+.. |.+..++..++.+|...|+
T Consensus 2 ~g~~~~A~~~~~~al~~--~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~lg~~~~~~g~ 72 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH--RPQ--DFVAWLMLADAELGMGDTTAGEMAVQRGLALH-----PGHPEAVARLGRVRWTQQR 72 (568)
T ss_dssp ---------------------C--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-----TTCHHHHHHHHHHHHHTTC
T ss_pred CccHHHHHHHHHHHHHh--CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCC
Confidence 58999999999999875 454 46799999999999999999999999999975 7889999999999999999
Q ss_pred hHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHcc---CCHHHHH
Q 016027 88 VKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRL---RRVDRAI 164 (396)
Q Consensus 88 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~ 164 (396)
+++|.+.++++.+.+|. +...+..+..++.+.|++++|.+.|++..+.... +...+..+..++... |++++|.
T Consensus 73 ~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~ 148 (568)
T 2vsy_A 73 HAEAAVLLQQASDAAPE---HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLS 148 (568)
T ss_dssp HHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHH
T ss_pred HHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHH
Confidence 99999999999988654 6889999999999999999999999999887533 678889999999999 9999999
Q ss_pred HHHHHHHHcC
Q 016027 165 RLVKEMRKEG 174 (396)
Q Consensus 165 ~~~~~~~~~~ 174 (396)
+.+++..+.+
T Consensus 149 ~~~~~al~~~ 158 (568)
T 2vsy_A 149 AQVRAAVAQG 158 (568)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHhcC
Confidence 9999998875
No 108
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.37 E-value=3.7e-11 Score=99.06 Aligned_cols=163 Identities=12% Similarity=0.051 Sum_probs=87.1
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHH-
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRV- 111 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~- 111 (396)
...+..++..+.+.|++++|+..|+++.... |.++.++..++..+...|++++|...++++...+| +...
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-----P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p----~~~~~ 187 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQLS-----NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQ----DTRYQ 187 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-----TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGC----SHHHH
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-----CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhc----chHHH
Confidence 3455566666666666666666666666553 55556666666666666666666666666554422 2221
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHH
Q 016027 112 YNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIE-PNAIVYNTVIDGLV 190 (396)
Q Consensus 112 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~ 190 (396)
.......+...++.++|...+++.....+ .+...+..+...+...|++++|+..|+++.+.... .+...+..++..+.
T Consensus 188 ~~~~~~~l~~~~~~~~a~~~l~~al~~~P-~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~ 266 (287)
T 3qou_A 188 GLVAQIELLXQAADTPEIQQLQQQVAENP-EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILA 266 (287)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccCccHHHHHHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHH
Confidence 22222234445555555555555555432 24555555555666666666666666655554211 11344555555555
Q ss_pred HcCCHHHHHHHHHHH
Q 016027 191 EAGRFEEVSGMMERF 205 (396)
Q Consensus 191 ~~~~~~~a~~~~~~~ 205 (396)
..|+.++|...+++.
T Consensus 267 ~~g~~~~a~~~~r~a 281 (287)
T 3qou_A 267 ALGTGDALASXYRRQ 281 (287)
T ss_dssp HHCTTCHHHHHHHHH
T ss_pred HcCCCCcHHHHHHHH
Confidence 555555555555544
No 109
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.36 E-value=1.1e-10 Score=84.21 Aligned_cols=130 Identities=18% Similarity=0.269 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHH
Q 016027 74 LFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEG 153 (396)
Q Consensus 74 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 153 (396)
++..++..+...|++++|.++++++...++. +...+..++..+...|++++|...++++...+. .+...+..+...
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~ 78 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPR---SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNA 78 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCc---chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-CchHHHHHHHHH
Confidence 4566777777777777777777777665332 566677777777777777777777777766532 245566666777
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 016027 154 YCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVC 208 (396)
Q Consensus 154 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 208 (396)
+...|++++|.++++.+.+.. +.+...+..+..++...|++++|...++++...
T Consensus 79 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 79 YYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 777777777777777766653 334556666666666677777777776666553
No 110
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.34 E-value=2.9e-10 Score=89.08 Aligned_cols=177 Identities=10% Similarity=-0.033 Sum_probs=123.3
Q ss_pred hHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcC----Ch
Q 016027 13 SAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQG----RV 88 (396)
Q Consensus 13 ~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~ 88 (396)
+|++.|.+..+. -+ ..++..++..+...+++++|+.+|+++.+. .++.++..|...|.. + ++
T Consensus 4 eA~~~~~~aa~~---g~---~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-------g~~~a~~~lg~~y~~-~g~~~~~ 69 (212)
T 3rjv_A 4 EPGSQYQQQAEA---GD---RRAQYYLADTWVSSGDYQKAEYWAQKAAAQ-------GDGDALALLAQLKIR-NPQQADY 69 (212)
T ss_dssp CTTHHHHHHHHT---TC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-------TCHHHHHHHHHHTTS-STTSCCH
T ss_pred hHHHHHHHHHHC---CC---HHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-------CCHHHHHHHHHHHHc-CCCCCCH
Confidence 466677777663 22 557888888888888888888888888764 356677777777777 6 78
Q ss_pred HHHHHHHHHHhhccCCCCCChHHHHHHHHHHHh----cCChhHHHHHHHHHHhCCCC-CChhHHHHHHHHHHc----cCC
Q 016027 89 KAASEYFHKRKELDQSWAPTVRVYNILLNGWFR----SKNVKDAERFWLEMRKENVT-PNVVTYGTLVEGYCR----LRR 159 (396)
Q Consensus 89 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~ 159 (396)
++|.++|+++... + +...+..|...|.. .+++++|+..|++..+.|.. .+..++..|...|.. .++
T Consensus 70 ~~A~~~~~~A~~~--g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d 144 (212)
T 3rjv_A 70 PQARQLAEKAVEA--G---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPED 144 (212)
T ss_dssp HHHHHHHHHHHHT--T---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCC
T ss_pred HHHHHHHHHHHHC--C---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCC
Confidence 8888888887654 3 66677777777776 67888888888887776521 025667777777776 667
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHhcCC
Q 016027 160 VDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEA-G-----RFEEVSGMMERFLVCEP 210 (396)
Q Consensus 160 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-----~~~~a~~~~~~~~~~~~ 210 (396)
+++|+.+|++..+. +.+...+..+..+|... | ++++|...|++..+.|.
T Consensus 145 ~~~A~~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 145 DVKASEYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 77888888777766 22444556666666543 2 67777777777776654
No 111
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.33 E-value=1e-10 Score=106.48 Aligned_cols=156 Identities=8% Similarity=-0.031 Sum_probs=123.3
Q ss_pred cCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCCh
Q 016027 46 AGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNV 125 (396)
Q Consensus 46 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 125 (396)
.|++++|++.|+++.+.. |.+..++..++..+...|++++|.+.|+++.+.+|. +...+..+..++...|++
T Consensus 2 ~g~~~~A~~~~~~al~~~-----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~ 73 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-----PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG---HPEAVARLGRVRWTQQRH 73 (568)
T ss_dssp ------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT---CHHHHHHHHHHHHHTTCH
T ss_pred CccHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHCCCH
Confidence 478999999999998875 778899999999999999999999999999987654 688999999999999999
Q ss_pred hHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc---CCHHHHHHHH
Q 016027 126 KDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEA---GRFEEVSGMM 202 (396)
Q Consensus 126 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~ 202 (396)
++|.+.|++..+.... +...+..+..++...|++++|.+.+++..+.. +.+...+..+..++... |++++|.+.+
T Consensus 74 ~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~ 151 (568)
T 2vsy_A 74 AEAAVLLQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQV 151 (568)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 9999999999887533 67899999999999999999999999999874 45678888999999999 9999999999
Q ss_pred HHHHhcCCC
Q 016027 203 ERFLVCEPG 211 (396)
Q Consensus 203 ~~~~~~~~~ 211 (396)
++..+.++.
T Consensus 152 ~~al~~~p~ 160 (568)
T 2vsy_A 152 RAAVAQGVG 160 (568)
T ss_dssp HHHHHHTCC
T ss_pred HHHHhcCCc
Confidence 999987654
No 112
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.31 E-value=1.7e-10 Score=95.12 Aligned_cols=165 Identities=12% Similarity=0.055 Sum_probs=76.4
Q ss_pred CCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHH
Q 016027 69 DSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYG 148 (396)
Q Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 148 (396)
|.+...+..++..+...|++++|...|+++...+|+ +...+..+...+.+.|++++|...++++.... |+.....
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~---~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~ 188 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ---NGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQG 188 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS---CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc---chhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHH
Confidence 333444445555555555555555555555554433 44455555555555555555555555544332 2222111
Q ss_pred -HHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-chhhHHHHHHHHHh
Q 016027 149 -TLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGP-TMVTYTSLVKGYCK 226 (396)
Q Consensus 149 -~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 226 (396)
.....+...++.++|+..+++..+.. +.+...+..+..++...|++++|+..|.++++..+.. +...+..++..+..
T Consensus 189 ~~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~ 267 (287)
T 3qou_A 189 LVAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAA 267 (287)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHH
Confidence 11122334444444555555544442 3344444455555555555555555555555443321 13444455555555
Q ss_pred cCChHHHHHHHHH
Q 016027 227 AGDLEGASKILKM 239 (396)
Q Consensus 227 ~~~~~~a~~~~~~ 239 (396)
.|+.++|...+++
T Consensus 268 ~g~~~~a~~~~r~ 280 (287)
T 3qou_A 268 LGTGDALASXYRR 280 (287)
T ss_dssp HCTTCHHHHHHHH
T ss_pred cCCCCcHHHHHHH
Confidence 5555555444443
No 113
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.31 E-value=5.9e-10 Score=87.36 Aligned_cols=176 Identities=10% Similarity=-0.028 Sum_probs=110.1
Q ss_pred HHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcC----Chh
Q 016027 51 AAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSK----NVK 126 (396)
Q Consensus 51 ~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~ 126 (396)
+|++.|+++.+. .++.++..+...|...+++++|.++|+++... + +...+..+...|.. + +++
T Consensus 4 eA~~~~~~aa~~-------g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g---~~~a~~~lg~~y~~-~g~~~~~~ 70 (212)
T 3rjv_A 4 EPGSQYQQQAEA-------GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--G---DGDALALLAQLKIR-NPQQADYP 70 (212)
T ss_dssp CTTHHHHHHHHT-------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--T---CHHHHHHHHHHTTS-STTSCCHH
T ss_pred hHHHHHHHHHHC-------CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--C---CHHHHHHHHHHHHc-CCCCCCHH
Confidence 355666666553 35566777777777777777777777777654 3 55666666666666 5 677
Q ss_pred HHHHHHHHHHhCCCCCChhHHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHH----cCCHHH
Q 016027 127 DAERFWLEMRKENVTPNVVTYGTLVEGYCR----LRRVDRAIRLVKEMRKEGIE-PNAIVYNTVIDGLVE----AGRFEE 197 (396)
Q Consensus 127 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~ 197 (396)
+|.+.|++..+.| +..++..|...|.. .+++++|+++|++..+.|.. ..+..+..+..+|.. .+++++
T Consensus 71 ~A~~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~ 147 (212)
T 3rjv_A 71 QARQLAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVK 147 (212)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHH
Confidence 7777777776654 55566666666665 66777777777777666421 114556666666666 566777
Q ss_pred HHHHHHHHHhcCCCCchhhHHHHHHHHHhc-C-----ChHHHHHHHHHHHHCC
Q 016027 198 VSGMMERFLVCEPGPTMVTYTSLVKGYCKA-G-----DLEGASKILKMMISRG 244 (396)
Q Consensus 198 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-----~~~~a~~~~~~~~~~~ 244 (396)
|+..|++..+.+ .+...+..+..+|... | ++++|...|+...+.|
T Consensus 148 A~~~~~~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 148 ASEYFKGSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 777777766541 2333455555555432 2 5666666666666654
No 114
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.27 E-value=1.4e-10 Score=96.67 Aligned_cols=165 Identities=13% Similarity=0.054 Sum_probs=78.8
Q ss_pred hccCchhHHHHHHHHhCCCC------CCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCC-CchhHHHHH
Q 016027 7 KAKEFDSAWCLLLDKIGGHE------VPDFV-SKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFD-SGASLFEIL 78 (396)
Q Consensus 7 ~~g~~~~A~~~~~~~~~~~~------~p~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~~l 78 (396)
..|++++|..++.++.+... .++.. ....|...+..|...|++++|+..|.++.......+.+ ....++..+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~l 82 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQA 82 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 46888999998887654211 11100 01244455555666666666666666665543211101 113345555
Q ss_pred HHHHHHcCChHHHHHHHHHHhhccCCC-CC--ChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-----ChhHHHHH
Q 016027 79 LDSLCKQGRVKAASEYFHKRKELDQSW-AP--TVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTP-----NVVTYGTL 150 (396)
Q Consensus 79 ~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l 150 (396)
+.+|...|++++|+..|+++....+.. .+ ...+++.+...|.. |++++|+..|++........ ...++..+
T Consensus 83 g~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l 161 (307)
T 2ifu_A 83 GMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKA 161 (307)
T ss_dssp HHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 666666666666666666554431110 00 12344445555544 55555555555544321000 02334444
Q ss_pred HHHHHccCCHHHHHHHHHHHHH
Q 016027 151 VEGYCRLRRVDRAIRLVKEMRK 172 (396)
Q Consensus 151 ~~~~~~~~~~~~a~~~~~~~~~ 172 (396)
...+...|++++|+..|++..+
T Consensus 162 g~~~~~~g~~~~A~~~~~~al~ 183 (307)
T 2ifu_A 162 SRLLVRQQKFDEAAASLQKEKS 183 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 4444555555555555444443
No 115
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.27 E-value=3e-10 Score=80.76 Aligned_cols=111 Identities=14% Similarity=0.061 Sum_probs=93.9
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHH
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVY 112 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 112 (396)
...+...+..+.+.|++++|++.|+++++.. |.++.+|..++.++.+.|++++|++.|+++.+.+|. +...|
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---~~~a~ 84 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-----PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK---FIKGY 84 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh---hhHHH
Confidence 5688899999999999999999999999875 888899999999999999999999999999988655 77889
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHH
Q 016027 113 NILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVE 152 (396)
Q Consensus 113 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 152 (396)
..+..++...|++++|++.|++.++..+. +...+..+..
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~-~~~a~~~l~~ 123 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVDPS-NEEAREGVRN 123 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCcC-CHHHHHHHHH
Confidence 99999999999999999999998886432 4555544443
No 116
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.26 E-value=1.8e-11 Score=89.73 Aligned_cols=100 Identities=13% Similarity=0.029 Sum_probs=79.1
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHH
Q 016027 32 SKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRV 111 (396)
Q Consensus 32 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 111 (396)
+..++..++..+.+.|++++|+..|+++...+ |.++..|..++.+|...|++++|+..|+++...+|. +...
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-----P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~---~~~~ 106 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-----FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN---DYTP 106 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS---CCHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC---CcHH
Confidence 35677888888888888888888888888775 777788888888888888888888888888877655 6677
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 016027 112 YNILLNGWFRSKNVKDAERFWLEMRKEN 139 (396)
Q Consensus 112 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 139 (396)
|..+..++...|++++|...|++..+..
T Consensus 107 ~~~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 107 VFHTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 7788888888888888888888877753
No 117
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.25 E-value=3e-10 Score=94.61 Aligned_cols=161 Identities=9% Similarity=0.035 Sum_probs=73.7
Q ss_pred HcCCHHHHHHHHHHHhhccccc--CCCCc----hhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCC---ChHHHHHH
Q 016027 45 RAGMVEAAIWTFEFANNLDMVK--NFDSG----ASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAP---TVRVYNIL 115 (396)
Q Consensus 45 ~~g~~~~A~~~~~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~~~l 115 (396)
..|++++|.++++++.+..... ...++ ...|...+..|...|++++|...|.++....+.... -..+|+.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~l 82 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQA 82 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3578889999999887753210 00111 123444455555556666666665555443211100 12345555
Q ss_pred HHHHHhcCChhHHHHHHHHHHhC----CCCC-ChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCC---CC--CHHHHHHH
Q 016027 116 LNGWFRSKNVKDAERFWLEMRKE----NVTP-NVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGI---EP--NAIVYNTV 185 (396)
Q Consensus 116 ~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l 185 (396)
...|...|++++|+..|++..+. |-.. ...++..+..+|.. |++++|+..|++.++... .+ ...++..+
T Consensus 83 g~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l 161 (307)
T 2ifu_A 83 GMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKA 161 (307)
T ss_dssp HHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 55555555555555555554322 1000 12234444444444 555555555544443210 00 02233344
Q ss_pred HHHHHHcCCHHHHHHHHHHHH
Q 016027 186 IDGLVEAGRFEEVSGMMERFL 206 (396)
Q Consensus 186 ~~~~~~~~~~~~a~~~~~~~~ 206 (396)
..++.+.|++++|+..|++..
T Consensus 162 g~~~~~~g~~~~A~~~~~~al 182 (307)
T 2ifu_A 162 SRLLVRQQKFDEAAASLQKEK 182 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 444444444444444444443
No 118
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.23 E-value=1.5e-10 Score=82.31 Aligned_cols=103 Identities=11% Similarity=0.016 Sum_probs=91.2
Q ss_pred hhhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHH
Q 016027 3 KVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSL 82 (396)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 82 (396)
..|.+.|++++|+..|.++++. .|+ +..+|..++.++...|++++|+..|+++++.+ |.++.+|..++.++
T Consensus 21 ~~~~~~g~~~~A~~~~~~al~~--~p~--~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-----p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 21 NEYFKKGDYPTAMRHYNEAVKR--DPE--NAILYSNRAACLTKLMEFQRALDDCDTCIRLD-----SKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCC--CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-----hhhhHHHHHHHHHH
Confidence 4678899999999999999984 455 47799999999999999999999999999986 88899999999999
Q ss_pred HHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHH
Q 016027 83 CKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLN 117 (396)
Q Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~ 117 (396)
...|++++|++.|+++.+.+|. +...+..+..
T Consensus 92 ~~~~~~~~A~~~~~~al~l~P~---~~~a~~~l~~ 123 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVDPS---NEEAREGVRN 123 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCcC---CHHHHHHHHH
Confidence 9999999999999999998765 6666666554
No 119
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.23 E-value=2e-08 Score=83.29 Aligned_cols=184 Identities=10% Similarity=-0.006 Sum_probs=141.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcC-ChHHHHHHHHHHhhccCCCCCChHHHHH
Q 016027 36 FVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQG-RVKAASEYFHKRKELDQSWAPTVRVYNI 114 (396)
Q Consensus 36 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 114 (396)
+..+-......+..++|++++++++..+ |.+..+|+.-..++...| .++++++.++.+...+|. +..+|+.
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~n-----P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK---ny~aW~h 128 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRMN-----PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK---SYQVWHH 128 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC---CHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhC-----chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC---cHHHHHH
Confidence 3344444445556678999999999986 888889999988888888 599999999999987655 7888888
Q ss_pred HHHHHHhc-C-ChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHH--------HHHHHHHHHHHcCCCCCHHHHHH
Q 016027 115 LLNGWFRS-K-NVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVD--------RAIRLVKEMRKEGIEPNAIVYNT 184 (396)
Q Consensus 115 l~~~~~~~-~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~ 184 (396)
-...+... + ++++++++++++.+...+ |..+|+.-.-.+.+.+.++ ++++.++++++.. +-|...|+.
T Consensus 129 R~wlL~~l~~~~~~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~ 206 (349)
T 3q7a_A 129 RLLLLDRISPQDPVSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGW 206 (349)
T ss_dssp HHHHHHHHCCSCCHHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 77777776 6 889999999999987644 7788877666666666665 8888888888875 457777777
Q ss_pred HHHHHHHcCC-------HHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCh
Q 016027 185 VIDGLVEAGR-------FEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDL 230 (396)
Q Consensus 185 l~~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 230 (396)
...++.+.+. ++++++.+++++...+. +...|+.+-..+.+.|..
T Consensus 207 R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 207 RWYLRVSRPGAETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHhccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCC
Confidence 7777777765 67888888888877663 777777766666665543
No 120
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.21 E-value=1.4e-10 Score=95.28 Aligned_cols=195 Identities=10% Similarity=-0.035 Sum_probs=132.4
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHH
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVY 112 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 112 (396)
...+..++..+...|++++|+..|+++.... |.+..++..++.+|...|++++|.+.++++...+|. +...+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~ 75 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-----PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ---SVKAH 75 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT---CHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---CHHHH
Confidence 5688899999999999999999999999875 778899999999999999999999999999987654 77889
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 016027 113 NILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEA 192 (396)
Q Consensus 113 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 192 (396)
..+..++...|++++|...|++..+.... +...+...+....+. .++.. +........+.+......+... ..
T Consensus 76 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~i~~~l~~l--~~ 148 (281)
T 2c2l_A 76 FFLGQCQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALRI---AKKKR-WNSIEERRIHQESELHSYLTRL--IA 148 (281)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHHH---HHHHH-HHHHHHTCCCCCCHHHHHHHHH--HH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHH---HHHHH-HHHHHHHHHhhhHHHHHHHHHH--HH
Confidence 99999999999999999999988765311 111111111111111 11111 1222223334444444444332 26
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhc-CChHHHHHHHHHHHHC
Q 016027 193 GRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKA-GDLEGASKILKMMISR 243 (396)
Q Consensus 193 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~ 243 (396)
|++++|++.++...+..+ .+......+...+.+. +.+++|..+|..+.+.
T Consensus 149 ~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 149 AERERELEECQRNHEGHE-DDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHHHHHTTTSGGGTTTS-CHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHHHHHhhhcccc-chhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 888888888888776533 2333344444444444 5577888888777653
No 121
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.20 E-value=1.2e-09 Score=85.76 Aligned_cols=124 Identities=12% Similarity=-0.036 Sum_probs=82.6
Q ss_pred hhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHH
Q 016027 4 VLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLC 83 (396)
Q Consensus 4 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 83 (396)
.+...|++++|+..|.+++. |+ ..++..++.++...|++++|+..|+++.... |.+..++..++.++.
T Consensus 15 ~~~~~~~~~~A~~~~~~a~~----~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 15 LAADKKDWKGALDAFSAVQD----PH---SRICFNIGCMYTILKNMTEAEKAFTRSINRD-----KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHTTCHHHHHHHHHTSSS----CC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHcC----CC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----ccchHHHHHHHHHHH
Confidence 45566777777777766642 33 5577777777777777777777777777664 566667777777777
Q ss_pred HcCChHHHHHHHHHHhhccCCCC------------C-ChHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 016027 84 KQGRVKAASEYFHKRKELDQSWA------------P-TVRVYNILLNGWFRSKNVKDAERFWLEMRKEN 139 (396)
Q Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~------------~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 139 (396)
..|++++|.+.|+++....+... | ....+..+..++...|++++|...|++..+..
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 77777777777777766543311 1 12566667777777777777777777776653
No 122
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.20 E-value=1.6e-09 Score=81.21 Aligned_cols=130 Identities=16% Similarity=0.052 Sum_probs=101.1
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHH
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVY 112 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 112 (396)
...+..++..+...|++++|+..|+++.... |.+..++..++.++...|++++|.+.++++...+|. +...+
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~ 84 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN-----PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK---YIKGY 84 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc---cHHHH
Confidence 4477888888999999999999999888874 677888888999999999999999999988887543 67788
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHH--HHHHHHHccCCHHHHHHHHHHHH
Q 016027 113 NILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYG--TLVEGYCRLRRVDRAIRLVKEMR 171 (396)
Q Consensus 113 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~ 171 (396)
..+..++...|++++|...|++..+.... +...+. ..+..+...|++++|++.+....
T Consensus 85 ~~~a~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 85 YRRAASNMALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 88888888889999999988888776432 444443 33334667788888887776654
No 123
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.19 E-value=4.5e-10 Score=85.33 Aligned_cols=124 Identities=18% Similarity=0.258 Sum_probs=98.2
Q ss_pred hhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHH-H
Q 016027 4 VLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDS-L 82 (396)
Q Consensus 4 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~ 82 (396)
.+...|++++|+..+.+++.. .|+ +..+|..++.++...|++++|+..|+++.... |.++.++..++.+ +
T Consensus 19 ~~~~~~~~~~A~~~~~~al~~--~p~--~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~la~~l~ 89 (177)
T 2e2e_A 19 QFASQQNPEAQLQALQDKIRA--NPQ--NSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-----GENAELYAALATVLY 89 (177)
T ss_dssp CCC-----CCCCHHHHHHHHH--CCS--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----CSCHHHHHHHHHHHH
T ss_pred hhhhccCHHHHHHHHHHHHHh--CCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCHHHHHHHHHHHH
Confidence 356778899999888888874 344 36788899999999999999999999988875 6778888888888 7
Q ss_pred HHcCCh--HHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 016027 83 CKQGRV--KAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKEN 139 (396)
Q Consensus 83 ~~~~~~--~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 139 (396)
...|++ ++|...|+++...+|. +...+..+...+...|++++|...|+++.+..
T Consensus 90 ~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 90 YQASQHMTAQTRAMIDKALALDSN---EITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHTTTCCCHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HhcCCcchHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 788888 9999999998887554 67788888888999999999999999888764
No 124
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.19 E-value=1.5e-07 Score=83.38 Aligned_cols=310 Identities=9% Similarity=-0.041 Sum_probs=196.6
Q ss_pred chhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHH----HcCCHHHHHHHHHHHhhcccccCCCCc--hhHHHHHHHHHHH
Q 016027 11 FDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYA----RAGMVEAAIWTFEFANNLDMVKNFDSG--ASLFEILLDSLCK 84 (396)
Q Consensus 11 ~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~ 84 (396)
.+....+|+.++..- .++..+...|...+..+. .+|+.+.+..+|+++... |.. ..+|......-..
T Consensus 64 ~~~i~~~fe~al~~v-g~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~------P~~~~~~lw~~Y~~fE~~ 136 (493)
T 2uy1_A 64 KFKLYEVYEFTLGQF-ENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT------PMGSLSELWKDFENFELE 136 (493)
T ss_dssp --CTHHHHHHHHHHS-TTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS------CCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc-CCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC------hhhhHHHHHHHHHHHHHH
Confidence 355667788777642 122235789988888775 357889999999999984 332 2233333222111
Q ss_pred c-------------CChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcC-C------hhHHHHHHHHHHhCCCCCCh
Q 016027 85 Q-------------GRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSK-N------VKDAERFWLEMRKENVTPNV 144 (396)
Q Consensus 85 ~-------------~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~------~~~a~~~~~~~~~~~~~~~~ 144 (396)
. +.+..|..+++.+...-+. .+...|...+..-...+ . .+.+..+|++++... +.+.
T Consensus 137 ~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~--~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~ 213 (493)
T 2uy1_A 137 LNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRG--WSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAE 213 (493)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--CSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCH
T ss_pred hccccHHHHHHHHhHHHHHHHHHHHHHHHHHhh--ccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCH
Confidence 1 2233445555555443111 24446666665533221 1 345778999988764 4468
Q ss_pred hHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------------CCC
Q 016027 145 VTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCE------------PGP 212 (396)
Q Consensus 145 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------------~~~ 212 (396)
..|...+..+...|+.+.|..++++.... +.+...+.. |....+.++. ++.+.+.- ...
T Consensus 214 ~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~ 284 (493)
T 2uy1_A 214 EVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKE 284 (493)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHH---HHHHHHHTC----------CHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHH---HHHHHHHHHhhccchhhhhcccc
Confidence 88998999999999999999999999988 444333322 2222111121 22222110 011
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhcc-CCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 016027 213 TMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKF-GKVEDAMNLYRKMIESGYTPDRLTYHILL 291 (396)
Q Consensus 213 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 291 (396)
....|...+....+.++.+.|..+|+.. .. ...+...|...+..-... ++.+.|..+|+...+.. +-++..+...+
T Consensus 285 ~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yi 361 (493)
T 2uy1_A 285 LDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFF 361 (493)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 2356777777777788899999999999 32 223444454333322223 36999999999988863 22345566677
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 016027 292 KILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIR 347 (396)
Q Consensus 292 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 347 (396)
......|+.+.|..+|+.+. . ....|...+..-...|+.+.+.+++++..+
T Consensus 362 d~e~~~~~~~~aR~l~er~~----k-~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 362 LFLLRIGDEENARALFKRLE----K-TSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHTCHHHHHHHHHHSC----C-BHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHH----H-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77788999999999999973 1 577888888887888999999999988874
No 125
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.18 E-value=3.8e-10 Score=82.78 Aligned_cols=111 Identities=14% Similarity=0.021 Sum_probs=94.9
Q ss_pred HHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHH
Q 016027 16 CLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYF 95 (396)
Q Consensus 16 ~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 95 (396)
..|.+++.. .|+ +..++..++..+.+.|++++|+..|+++.... |.++.++..++.++...|++++|++.|
T Consensus 8 ~~~~~al~~--~p~--~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~lg~~~~~~g~~~~A~~~~ 78 (148)
T 2vgx_A 8 GTIAMLNEI--SSD--TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-----HYDSRFFLGLGACRQAMGQYDLAIHSY 78 (148)
T ss_dssp CSHHHHTTC--CHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhHHHHHcC--CHh--hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-----cccHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 345666663 344 36688899999999999999999999999875 788899999999999999999999999
Q ss_pred HHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 016027 96 HKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKE 138 (396)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 138 (396)
+++...+|. +...+..+..++...|++++|...|++..+.
T Consensus 79 ~~al~l~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 79 SYGAVMDIX---EPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHSTT---CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhcCCC---CchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999988655 6778889999999999999999999998875
No 126
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.17 E-value=1.9e-10 Score=92.16 Aligned_cols=203 Identities=10% Similarity=-0.073 Sum_probs=147.8
Q ss_pred hccCchhHHHHHHHHhCCCCCCCCCChhHHHHH-------HHHHHHcCCHHHHHHHHHHHhhccccc-----C-C-----
Q 016027 7 KAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVIL-------IRRYARAGMVEAAIWTFEFANNLDMVK-----N-F----- 68 (396)
Q Consensus 7 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~-~----- 68 (396)
..+++..|.+.|.++... .|+ ..++|..+ ..++.+.++..+++..+.+.....+.. + .
T Consensus 18 ~~~d~~~A~~~F~~a~~~--dP~--~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~ 93 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNY--DES--ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGD 93 (282)
T ss_dssp TTTCHHHHHHHHHHHHHH--CTT--CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCC
T ss_pred cCCCHHHHHHHHHHHHHh--Chh--hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccc
Confidence 578999999999999884 555 36799988 788888888888888888887743211 0 0
Q ss_pred -----CCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 016027 69 -----DSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPN 143 (396)
Q Consensus 69 -----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 143 (396)
.....+...++..+...|++++|.++|+.+...+|+ +. ....+...+.+.+++++|+..|+...... .|.
T Consensus 94 ~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~---~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~ 168 (282)
T 4f3v_A 94 ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSE---HL-VAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKF 168 (282)
T ss_dssp CEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCH---HH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHH
T ss_pred cccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc---hH-HHHHHHHHHHHcCCHHHHHHHHHHhhccC-Ccc
Confidence 111345666788888999999999999888765332 23 66667778889999999999998665431 111
Q ss_pred --hhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHH
Q 016027 144 --VVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPN--AIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTS 219 (396)
Q Consensus 144 --~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 219 (396)
...+..+..++...|++++|+..|++.......|. .........++.+.|+.++|...|+++....+. ...+..
T Consensus 169 ~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~--~~~~~a 246 (282)
T 4f3v_A 169 LAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE--PKVAAA 246 (282)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC--HHHHHH
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc--HHHHHH
Confidence 33677788888999999999999998875433243 345666777888899999999999999886553 444443
Q ss_pred H
Q 016027 220 L 220 (396)
Q Consensus 220 l 220 (396)
|
T Consensus 247 L 247 (282)
T 4f3v_A 247 L 247 (282)
T ss_dssp H
T ss_pred H
Confidence 3
No 127
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.17 E-value=1.5e-10 Score=84.79 Aligned_cols=102 Identities=12% Similarity=0.002 Sum_probs=85.2
Q ss_pred CCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHH
Q 016027 69 DSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYG 148 (396)
Q Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 148 (396)
|.+...+..++..+.+.|++++|...|+++...+|. +...|..+..++...|++++|+..|++..+..+. +...|.
T Consensus 33 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~---~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~ 108 (151)
T 3gyz_A 33 DDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY---NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVF 108 (151)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHH
Confidence 667778888888888899999999999998887665 7788888888888899999999999888876533 677888
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcC
Q 016027 149 TLVEGYCRLRRVDRAIRLVKEMRKEG 174 (396)
Q Consensus 149 ~l~~~~~~~~~~~~a~~~~~~~~~~~ 174 (396)
.+..++...|++++|+..|++.++..
T Consensus 109 ~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 109 HTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 88888888888888888888888773
No 128
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.16 E-value=3.3e-08 Score=81.97 Aligned_cols=172 Identities=12% Similarity=0.041 Sum_probs=93.9
Q ss_pred hcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-C-CHHH
Q 016027 121 RSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLR-RVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEA-G-RFEE 197 (396)
Q Consensus 121 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~ 197 (396)
+.+..++|++++++++..++. +..+|+.--..+...+ .+++++++++.++... +-+..+|+.-..++... + ++++
T Consensus 66 ~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHH
T ss_pred hCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHH
Confidence 344445677777777665433 4555666555555556 4667777777666653 44555666555555554 5 5666
Q ss_pred HHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChH--------HHHHHHHHHHHCCCCCChhhHHHHHHHHhccCC-----
Q 016027 198 VSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLE--------GASKILKMMISRGFLPSPTTYNYFFRYFSKFGK----- 264 (396)
Q Consensus 198 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----- 264 (396)
++.+++++.+..+. +..+|+.-.-++.+.|.++ ++++.++++.+.++. |...|+.....+.+.+.
T Consensus 144 EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~ 221 (349)
T 3q7a_A 144 EIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSS 221 (349)
T ss_dssp HHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCH
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccch
Confidence 66666666665442 5556655555554444444 555555555555433 55555555555555443
Q ss_pred --HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 016027 265 --VEDAMNLYRKMIESGYTPDRLTYHILLKILCKE 297 (396)
Q Consensus 265 --~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 297 (396)
++++++.+.++....+. |...|+.+-..+.+.
T Consensus 222 ~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~ 255 (349)
T 3q7a_A 222 RSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHF 255 (349)
T ss_dssp HHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhc
Confidence 34555555555544322 444444444333333
No 129
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.14 E-value=8.9e-09 Score=80.68 Aligned_cols=128 Identities=9% Similarity=-0.075 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHH
Q 016027 35 TFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNI 114 (396)
Q Consensus 35 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 114 (396)
.+..++..+...|++++|+..|+++. ++++.++..++..+...|++++|++.|+++...+|. +...|..
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~--------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~ 76 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ--------DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH---LAVAYFQ 76 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS--------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc--------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc---chHHHHH
Confidence 56678888889999999999998773 336778899999999999999999999998887544 6778888
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCC---------------ChhHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 016027 115 LLNGWFRSKNVKDAERFWLEMRKENVTP---------------NVVTYGTLVEGYCRLRRVDRAIRLVKEMRKE 173 (396)
Q Consensus 115 l~~~~~~~~~~~~a~~~~~~~~~~~~~~---------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 173 (396)
+..++...|++++|+..|++..+..... ....+..+..++...|++++|...++...+.
T Consensus 77 lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 77 RGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 9999999999999999999888753221 1256677777777777777777777777765
No 130
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.13 E-value=3.2e-09 Score=85.11 Aligned_cols=209 Identities=11% Similarity=-0.035 Sum_probs=153.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHH-------HHHHHHcCChHHHHHHHHHHhhccCCCCC-
Q 016027 36 FVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEIL-------LDSLCKQGRVKAASEYFHKRKELDQSWAP- 107 (396)
Q Consensus 36 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~A~~~~~~~~~~~~~~~~- 107 (396)
....+..+ ..++...|.+.|.++...+ |.....|..+ ...+...++..+++..+.......|+.-.
T Consensus 10 ~~~~~~~~-~~~d~~~A~~~F~~a~~~d-----P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a 83 (282)
T 4f3v_A 10 LFESAVSM-LPMSEARSLDLFTEITNYD-----ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNA 83 (282)
T ss_dssp HHHHHHHH-TTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCC
T ss_pred HHHHHhcc-cCCCHHHHHHHHHHHHHhC-----hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhh
Confidence 33444455 6899999999999999986 8889999988 68888888888888888887765332110
Q ss_pred --C---------------hHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHH
Q 016027 108 --T---------------VRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEM 170 (396)
Q Consensus 108 --~---------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 170 (396)
+ ...+..+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..++..
T Consensus 84 ~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a 161 (282)
T 4f3v_A 84 RIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSA 161 (282)
T ss_dssp EEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTG
T ss_pred hhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 1 2334556777888999999999999887654 43336666777888999999999999855
Q ss_pred HHcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--chhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 016027 171 RKEGIEPN--AIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGP--TMVTYTSLVKGYCKAGDLEGASKILKMMISRGFL 246 (396)
Q Consensus 171 ~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 246 (396)
.... .|. ...+..+..++...|++++|+..|++.......| ..........++.+.|+.++|..+|+++....
T Consensus 162 ~~~~-d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~-- 238 (282)
T 4f3v_A 162 GKWP-DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH-- 238 (282)
T ss_dssp GGCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--
T ss_pred hccC-CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--
Confidence 4432 121 2367777888999999999999999987543213 34466677788889999999999999998864
Q ss_pred CChhhHHHH
Q 016027 247 PSPTTYNYF 255 (396)
Q Consensus 247 ~~~~~~~~l 255 (396)
|+......|
T Consensus 239 P~~~~~~aL 247 (282)
T 4f3v_A 239 PEPKVAAAL 247 (282)
T ss_dssp CCHHHHHHH
T ss_pred CcHHHHHHH
Confidence 444444333
No 131
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.11 E-value=2.9e-09 Score=75.75 Aligned_cols=108 Identities=11% Similarity=0.054 Sum_probs=85.4
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCC----
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPT---- 108 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---- 108 (396)
..++..++..+.+.|++++|+..|+++++.. |.++.+|..++.+|...|++++|++.++++.+.+|...++
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-----p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 82 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELD-----PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLI 82 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHH
Confidence 4477889999999999999999999999875 7788889999999999999999999999988776554333
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHH
Q 016027 109 VRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTY 147 (396)
Q Consensus 109 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 147 (396)
..+|..+..++...|++++|++.|++.+.. .|+....
T Consensus 83 a~~~~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~ 119 (127)
T 4gcn_A 83 AKAMSRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELV 119 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHH
Confidence 235667777788888888888888887764 3454443
No 132
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.10 E-value=5.3e-10 Score=91.73 Aligned_cols=195 Identities=12% Similarity=0.022 Sum_probs=99.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 016027 178 NAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFR 257 (396)
Q Consensus 178 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 257 (396)
+...+..+...+...|++++|+..|+++....+. +...+..+..+|.+.|++++|...++...+... .+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 3445555566666666666666666666665432 555666666666666666666666666665532 24556666666
Q ss_pred HHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhH
Q 016027 258 YFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDE 337 (396)
Q Consensus 258 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 337 (396)
++...|++++|...|++..+.+.. +...+...+....+ ...+.. +..........+......+... ..|++++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~i~~~l~~l--~~~~~~~ 153 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALR---IAKKKR-WNSIEERRIHQESELHSYLTRL--IAAERER 153 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHH---HHHHHH-HHHHHHTCCCCCCHHHHHHHHH--HHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHH---HHHHHH-HHHHHHHHHhhhHHHHHHHHHH--HHHHHHH
Confidence 666666666666666665553210 00011111111111 111111 1112222223344443333322 2567777
Q ss_pred HHHHHHHHHHCCCCCCHHH-HHHHHHHHHHc-CCchHHHHHHHHHhcc
Q 016027 338 ASAEFEDMIRRGLVPHYLT-FKRLNDEFKKR-GMTALAQKLCNVMSSV 383 (396)
Q Consensus 338 a~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~-g~~~~A~~~~~~~~~~ 383 (396)
|++.+++..+. .|+... ...+...+.+. +.+++|.++|++..+.
T Consensus 154 A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 154 ELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 77777766653 344332 33333333333 5677777777776554
No 133
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.10 E-value=3e-09 Score=76.29 Aligned_cols=118 Identities=9% Similarity=-0.056 Sum_probs=86.0
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHH
Q 016027 32 SKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRV 111 (396)
Q Consensus 32 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 111 (396)
+..+|..++..+...|++++|+..|+++.... |.+..++..++.++...|++++|.+.++++...++. +...
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-----~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~ 86 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-----PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT---FIKG 86 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-----TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT---CHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC---chHH
Confidence 45678888888888888888888888887764 667777888888888888888888888888776443 5677
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccC
Q 016027 112 YNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLR 158 (396)
Q Consensus 112 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 158 (396)
+..+..++...|++++|...|++..+.... +...+..+..++...|
T Consensus 87 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 87 YTRKAAALEAMKDYTKAMDVYQKALDLDSS-CKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCGG-GTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhc
Confidence 777788888888888888888877765322 3445555555554433
No 134
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.09 E-value=7.2e-09 Score=73.25 Aligned_cols=114 Identities=22% Similarity=0.285 Sum_probs=81.9
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHH
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVY 112 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 112 (396)
..++..++..+...|++++|++.|+++.... |.+..++..++..+...|++++|..+++++....+. +..++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~ 80 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-----PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN---NAEAW 80 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc---cHHHH
Confidence 4577778888888888888888888887763 566777778888888888888888888887765433 56677
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHH
Q 016027 113 NILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYC 155 (396)
Q Consensus 113 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 155 (396)
..+...+...|++++|...|+++.+..+. +...+..+...+.
T Consensus 81 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~ 122 (125)
T 1na0_A 81 YNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGNAKQ 122 (125)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHH
Confidence 77777788888888888888877765322 4445555544443
No 135
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.09 E-value=1.8e-09 Score=81.98 Aligned_cols=123 Identities=10% Similarity=0.089 Sum_probs=99.0
Q ss_pred HHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHH-HHh
Q 016027 43 YARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNG-WFR 121 (396)
Q Consensus 43 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~ 121 (396)
+...|++++|+..++++.... |.++.++..++..|...|++++|...|+++...+|. +...+..+..+ +..
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~la~~l~~~ 91 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-----PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE---NAELYAALATVLYYQ 91 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-----CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHhC-----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHh
Confidence 456788999999999988874 778888999999999999999999999999887654 67788888888 778
Q ss_pred cCCh--hHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 016027 122 SKNV--KDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEG 174 (396)
Q Consensus 122 ~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 174 (396)
.|++ ++|...|+++.+..+. +...+..+..++...|++++|...++.+.+..
T Consensus 92 ~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 92 ASQHMTAQTRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp TTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred cCCcchHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 8888 9999999998876433 67788888888999999999999999888773
No 136
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.09 E-value=1.3e-09 Score=79.33 Aligned_cols=110 Identities=18% Similarity=0.042 Sum_probs=92.3
Q ss_pred HHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHH
Q 016027 17 LLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFH 96 (396)
Q Consensus 17 ~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 96 (396)
.|.+++.. .|+ +...+..++..+.+.|++++|+..|+++.... |.++.++..++.++...|++++|+..|+
T Consensus 6 ~l~~al~~--~p~--~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 76 (142)
T 2xcb_A 6 TLAMLRGL--SED--TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-----HYDARYFLGLGACRQSLGLYEQALQSYS 76 (142)
T ss_dssp ---CCTTC--CHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHcC--CHH--HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-----CccHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 44555553 344 35688889999999999999999999999875 7888999999999999999999999999
Q ss_pred HHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 016027 97 KRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKE 138 (396)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 138 (396)
++...+|. +...+..+..++...|++++|...|+...+.
T Consensus 77 ~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 77 YGALMDIN---EPRFPFHAAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHCTT---CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCCC---CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99988665 6778888999999999999999999998775
No 137
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.09 E-value=5.4e-09 Score=74.61 Aligned_cols=119 Identities=14% Similarity=0.085 Sum_probs=88.9
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHH
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVY 112 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 112 (396)
...+..++..+...|++++|+..|+++.... |.+..++..++..+...|++++|.+.++++....|. +...+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~ 83 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-----PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA---YSKAY 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-----CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc---CHHHH
Confidence 4577788888888888888888888887764 666777888888888888888888888888776443 56677
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCH
Q 016027 113 NILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRV 160 (396)
Q Consensus 113 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 160 (396)
..+...+...|++++|...|++..+.... +...+..+..++...|++
T Consensus 84 ~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 84 GRMGLALSSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHhcC
Confidence 77788888888888888888887766422 556666666666665543
No 138
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.08 E-value=1.2e-08 Score=84.28 Aligned_cols=170 Identities=13% Similarity=0.053 Sum_probs=122.0
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCCh----HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-CC---
Q 016027 72 ASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTV----RVYNILLNGWFRSKNVKDAERFWLEMRKENVT-PN--- 143 (396)
Q Consensus 72 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~--- 143 (396)
...+...+..+...|++++|.+++++.....+. .|+. ..+..+...+...+++++|+..|++....... ++
T Consensus 75 ~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~ 153 (293)
T 3u3w_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ 153 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHhccccC-ChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHH
Confidence 445666778888888999999998888775433 3432 23446777777788889999998888874222 22
Q ss_pred -hhHHHHHHHHHHccCCHHHHHHHHHHHHHc-----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CC-
Q 016027 144 -VVTYGTLVEGYCRLRRVDRAIRLVKEMRKE-----GIEP-NAIVYNTVIDGLVEAGRFEEVSGMMERFLVCE----PG- 211 (396)
Q Consensus 144 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~- 211 (396)
..+++.+..+|...|++++|+..++++.+. +..+ ...++..+..+|.+.|++++|+..+++.++.. ..
T Consensus 154 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~ 233 (293)
T 3u3w_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA 233 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHH
Confidence 236888888888899999999888888741 1112 23467788888899999999998888877532 11
Q ss_pred CchhhHHHHHHHHHhcCC-hHHHHHHHHHHHH
Q 016027 212 PTMVTYTSLVKGYCKAGD-LEGASKILKMMIS 242 (396)
Q Consensus 212 ~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~ 242 (396)
.-..+|..+..+|.+.|+ +++|...+++...
T Consensus 234 ~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp THHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 125678888888888884 5888888887764
No 139
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.08 E-value=8.7e-08 Score=79.14 Aligned_cols=161 Identities=12% Similarity=0.023 Sum_probs=85.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCC-Cch----hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CC----hhhHHHH
Q 016027 186 IDGLVEAGRFEEVSGMMERFLVCEPG-PTM----VTYTSLVKGYCKAGDLEGASKILKMMISRGFL-PS----PTTYNYF 255 (396)
Q Consensus 186 ~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l 255 (396)
+..+...|++++|..++++....... ++. ..+..+...+...+++++|...++++...... ++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 45566677777777777776654221 111 12223555555566677777777666653221 11 1245666
Q ss_pred HHHHhccCCHHHHHHHHHHHHHC-----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCC-ChhhHHH
Q 016027 256 FRYFSKFGKVEDAMNLYRKMIES-----GYTP-DRLTYHILLKILCKEDKLDLAIQVSKEMKCRG----CDI-DLDTSTM 324 (396)
Q Consensus 256 ~~~~~~~~~~~~a~~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~~~~~~ 324 (396)
...|...|++++|...|+++.+. +..+ ...++..+..+|.+.|++++|...+++..+.. ..+ -..++..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 66666666666666666665531 1111 12245555666666666666666666554321 111 1345555
Q ss_pred HHHHHHhcCC-hhHHHHHHHHHH
Q 016027 325 LIHLLCRMYK-FDEASAEFEDMI 346 (396)
Q Consensus 325 l~~~~~~~~~-~~~a~~~~~~~~ 346 (396)
+..++.+.|+ +++|.+.+++.+
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHH
Confidence 5555555553 356665555544
No 140
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.08 E-value=4.5e-10 Score=94.70 Aligned_cols=146 Identities=10% Similarity=-0.072 Sum_probs=85.5
Q ss_pred cCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCC------------ChHHHH
Q 016027 46 AGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAP------------TVRVYN 113 (396)
Q Consensus 46 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------------~~~~~~ 113 (396)
.+++++|+..|+...... |.+...+..++..+.+.|++++|+..|+++....|.... ....|.
T Consensus 126 L~~~~~A~~~~~~a~~~~-----p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~ 200 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEK-----LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHL 200 (336)
T ss_dssp EEEEECCCCGGGCCHHHH-----HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHHHH-----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHH
Confidence 445556666665555442 455667788888888888888888888888776543110 034555
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 016027 114 ILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAG 193 (396)
Q Consensus 114 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 193 (396)
.+..++.+.|++++|+..|++.++.... +...+..+..++...|++++|+..|++.++.. +.+...+..+..++...|
T Consensus 201 nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~ 278 (336)
T 1p5q_A 201 NLAMCHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIR 278 (336)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHH
Confidence 5555666666666666666655554322 45555555555555555555555555555542 334445555555555555
Q ss_pred CHHHH
Q 016027 194 RFEEV 198 (396)
Q Consensus 194 ~~~~a 198 (396)
++++|
T Consensus 279 ~~~~a 283 (336)
T 1p5q_A 279 RQLAR 283 (336)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55554
No 141
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.08 E-value=5.7e-09 Score=87.93 Aligned_cols=152 Identities=15% Similarity=0.010 Sum_probs=124.8
Q ss_pred ccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCc---------------h
Q 016027 8 AKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSG---------------A 72 (396)
Q Consensus 8 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---------------~ 72 (396)
.+++++|...+...+.. .|+ ...++..++..+.+.|++++|+..|+++.... |.+ .
T Consensus 126 L~~~~~A~~~~~~a~~~--~p~--~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-----p~~~~~~~~~~~~~~~~~~ 196 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEE--KLE--QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL-----EYESSFSNEEAQKAQALRL 196 (336)
T ss_dssp EEEEECCCCGGGCCHHH--HHH--HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-----TTCCCCCSHHHHHHHHHHH
T ss_pred EeecccccchhcCCHHH--HHH--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh-----hccccCChHHHHHHHHHHH
Confidence 34555665555444432 233 25689999999999999999999999999985 444 5
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHH
Q 016027 73 SLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVE 152 (396)
Q Consensus 73 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 152 (396)
.++..++.+|.+.|++++|+..|+++...+|. +...|..+..++...|++++|+..|++..+..+. +...+..+..
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~ 272 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALELDSN---NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAV 272 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
Confidence 88999999999999999999999999998665 7889999999999999999999999999987533 6788899999
Q ss_pred HHHccCCHHHH-HHHHHHHHH
Q 016027 153 GYCRLRRVDRA-IRLVKEMRK 172 (396)
Q Consensus 153 ~~~~~~~~~~a-~~~~~~~~~ 172 (396)
++...|+.+++ ...|+.|..
T Consensus 273 ~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 273 CQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988 456666643
No 142
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.07 E-value=2.8e-08 Score=82.17 Aligned_cols=173 Identities=12% Similarity=0.015 Sum_probs=124.0
Q ss_pred CchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCC---CChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC---CCC
Q 016027 70 SGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWA---PTVRVYNILLNGWFRSKNVKDAERFWLEMRKENV---TPN 143 (396)
Q Consensus 70 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~ 143 (396)
.....+...+..+...|++++|.+.+.+.....+... .....+..+...+...|++++|+..+++...... .+.
T Consensus 73 ~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 152 (293)
T 2qfc_A 73 ERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVY 152 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTT
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchH
Confidence 3455677788888899999999999888776554311 0123355677777888899999999988875421 111
Q ss_pred --hhHHHHHHHHHHccCCHHHHHHHHHHHHH---cC-CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----
Q 016027 144 --VVTYGTLVEGYCRLRRVDRAIRLVKEMRK---EG-IEP--NAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPG---- 211 (396)
Q Consensus 144 --~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~-~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---- 211 (396)
..+++.+...|...|++++|+..+++..+ .. ..+ ...++..+..+|...|++++|+..+++..+....
T Consensus 153 ~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~ 232 (293)
T 2qfc_A 153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSM 232 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcH
Confidence 44788888899999999999999988873 21 111 1257788888899999999999999887753210
Q ss_pred -CchhhHHHHHHHHHhcCChHHH-HHHHHHHHH
Q 016027 212 -PTMVTYTSLVKGYCKAGDLEGA-SKILKMMIS 242 (396)
Q Consensus 212 -~~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~~ 242 (396)
.-..+|..+..+|...|++++| ...+++...
T Consensus 233 ~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 233 ALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp SSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 1256788888899999999998 776776653
No 143
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.07 E-value=6.5e-09 Score=73.88 Aligned_cols=98 Identities=15% Similarity=0.013 Sum_probs=85.6
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHH
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVY 112 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 112 (396)
...|..++..+...|++++|+..|+++.+.. |.++.++..++.++...|++++|+..|+++...+|. +...|
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~ 75 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-----PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN---FVRAY 75 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---cHHHH
Confidence 4578888999999999999999999998875 778889999999999999999999999999887655 67788
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhC
Q 016027 113 NILLNGWFRSKNVKDAERFWLEMRKE 138 (396)
Q Consensus 113 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 138 (396)
..+..++...|++++|...|++..+.
T Consensus 76 ~~lg~~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 76 IRKATAQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHh
Confidence 88999999999999999999988765
No 144
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.06 E-value=5.8e-09 Score=86.23 Aligned_cols=175 Identities=8% Similarity=-0.063 Sum_probs=120.7
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhccccc-CCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCC-CC--
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVK-NFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWA-PT-- 108 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~-- 108 (396)
...+...+..+...|++++|++.+.+..+..... ........+..++..+...|++++|+..++++....+... +.
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 4577778888888888888888888776543221 1123345566677788888888888888888765433221 22
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHH---hCC-CCC--ChhHHHHHHHHHHccCCHHHHHHHHHHHHHcC----CCC-
Q 016027 109 VRVYNILLNGWFRSKNVKDAERFWLEMR---KEN-VTP--NVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEG----IEP- 177 (396)
Q Consensus 109 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~-~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~- 177 (396)
..+|+.+...|...|++++|+..|++.. +.. ..+ ...++..+..+|...|++++|+..+++..+.. ...
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 4578888888888888888888888876 221 111 12577788888888888888888888776531 111
Q ss_pred CHHHHHHHHHHHHHcCCHHHH-HHHHHHHHh
Q 016027 178 NAIVYNTVIDGLVEAGRFEEV-SGMMERFLV 207 (396)
Q Consensus 178 ~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~~ 207 (396)
-..++..+..++.+.|++++| ...+++...
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 156677888888888888888 666776654
No 145
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.06 E-value=1.6e-09 Score=79.37 Aligned_cols=111 Identities=12% Similarity=-0.075 Sum_probs=87.3
Q ss_pred HHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHH
Q 016027 54 WTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWL 133 (396)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 133 (396)
..|+++.... |.+...+..++..+...|++++|...|+++...+|. +...|..+..++...|++++|+..|+
T Consensus 8 ~~~~~al~~~-----p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~ 79 (148)
T 2vgx_A 8 GTIAMLNEIS-----SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY---DSRFFLGLGACRQAMGQYDLAIHSYS 79 (148)
T ss_dssp CSHHHHTTCC-----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhHHHHHcCC-----HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc---cHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3455555553 566777888888888889999998888888877554 77788888888888888888888888
Q ss_pred HHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 016027 134 EMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKE 173 (396)
Q Consensus 134 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 173 (396)
+.....+. +...+..+..++...|++++|+..|+..++.
T Consensus 80 ~al~l~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 80 YGAVMDIX-EPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCCC-CchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88876433 6677788888888888888888888888775
No 146
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.06 E-value=3.8e-09 Score=82.04 Aligned_cols=164 Identities=12% Similarity=-0.012 Sum_probs=110.2
Q ss_pred hhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccC-CCCchhHHHHHHHHHH
Q 016027 5 LAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKN-FDSGASLFEILLDSLC 83 (396)
Q Consensus 5 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~ 83 (396)
+...|++++|.+.++.... .|. ....++..++..+...|++++|+..++++.......+ .+....++..++..+.
T Consensus 2 ~~~~g~~~~A~~~~~~~~~---~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~ 77 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLA---HPA-TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVER 77 (203)
T ss_dssp -----CHHHHHHHHHHHHT---STT-THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHhcC---ChH-HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 3568999999995444433 232 1267899999999999999999999999988432111 1345667888999999
Q ss_pred HcCChHHHHHHHHHHhhccCCCC----CChHHHHHHHHHHHhcCChhHHHHHHHHHHhCC---CCCC--hhHHHHHHHHH
Q 016027 84 KQGRVKAASEYFHKRKELDQSWA----PTVRVYNILLNGWFRSKNVKDAERFWLEMRKEN---VTPN--VVTYGTLVEGY 154 (396)
Q Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~--~~~~~~l~~~~ 154 (396)
..|++++|.+.++++........ .....+..+...+...|++++|...+++..... ..+. ..++..+...+
T Consensus 78 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 157 (203)
T 3gw4_A 78 MAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLA 157 (203)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 99999999999998776522111 123457777888888888888888888775421 0111 22345666677
Q ss_pred HccCCHHHHHHHHHHHHH
Q 016027 155 CRLRRVDRAIRLVKEMRK 172 (396)
Q Consensus 155 ~~~~~~~~a~~~~~~~~~ 172 (396)
...|++++|...+++..+
T Consensus 158 ~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 158 QQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHCcCHHHHHHHHHHHHH
Confidence 777777777777766554
No 147
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.05 E-value=1.6e-08 Score=75.58 Aligned_cols=130 Identities=14% Similarity=0.051 Sum_probs=86.3
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHH
Q 016027 72 ASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLV 151 (396)
Q Consensus 72 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 151 (396)
...+..++..+...|++++|...|+++...+|. +..++..+..++...|++++|...+++..+... .+...+..+.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a 88 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPS---NAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRA 88 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHH
Confidence 345666777777888888888888887776443 566777777777777888888887777776532 2566677777
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHH
Q 016027 152 EGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYN--TVIDGLVEAGRFEEVSGMMERFL 206 (396)
Q Consensus 152 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~ 206 (396)
.++...|++++|...+++..+.. +.+...+. ..+..+...|++++|+..+....
T Consensus 89 ~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 89 ASNMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 77777777777777777776653 22333332 23333556666777766666543
No 148
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.04 E-value=6.8e-07 Score=73.82 Aligned_cols=139 Identities=14% Similarity=0.024 Sum_probs=94.8
Q ss_pred hhccCch-hHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCC----------HHHHHHHHHHHhhcccccCCCCchhH
Q 016027 6 AKAKEFD-SAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGM----------VEAAIWTFEFANNLDMVKNFDSGASL 74 (396)
Q Consensus 6 ~~~g~~~-~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~~ 74 (396)
.+.|.+. +|+.++..++.. .|+ +..+|+.-..++...|. +++++.+++.+...+ |.+..+
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~--nP~--~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-----PKny~a 110 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGA--NPD--FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-----PKSYGT 110 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTT--CTT--CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-----TTCHHH
T ss_pred HHcCCCCHHHHHHHHHHHHH--Cch--hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-----CCCHHH
Confidence 3456665 678888888874 455 34577766555555444 567778888777764 777778
Q ss_pred HHHHHHHHHHcCC--hHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCC-hhHHHHHHHHHHhCCCCCChhHHHHHH
Q 016027 75 FEILLDSLCKQGR--VKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKN-VKDAERFWLEMRKENVTPNVVTYGTLV 151 (396)
Q Consensus 75 ~~~l~~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~ 151 (396)
|+.-..++...++ +++++.+++++...+|. |..+|+.-...+...|. ++++++.++++++..+. |..+|+...
T Consensus 111 W~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr---Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~ 186 (331)
T 3dss_A 111 WHHRCWLLSRLPEPNWARELELCARFLEADER---NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRS 186 (331)
T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHH
T ss_pred HHHHHHHHhccCcccHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHH
Confidence 8777777777773 77888888888776554 77777777666667776 47777777777776544 666776655
Q ss_pred HHHHcc
Q 016027 152 EGYCRL 157 (396)
Q Consensus 152 ~~~~~~ 157 (396)
..+...
T Consensus 187 ~ll~~l 192 (331)
T 3dss_A 187 CLLPQL 192 (331)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 554443
No 149
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.03 E-value=1.5e-08 Score=72.51 Aligned_cols=121 Identities=7% Similarity=-0.016 Sum_probs=79.0
Q ss_pred CCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHH
Q 016027 68 FDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTY 147 (396)
Q Consensus 68 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 147 (396)
.+.+...+..++..+...|++++|.+.|+++...++. +...+..+..++...|++++|+..+++..+... .+...+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~ 87 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK---DAKLYSNRAACYTKLLEFQLALKDCEECIQLEP-TFIKGY 87 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT---CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-TCHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CchHHH
Confidence 3556667777777777777788887777777765433 566777777777777777777777777766532 255666
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 016027 148 GTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAG 193 (396)
Q Consensus 148 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 193 (396)
..+..++...|++++|.+.+++..+.. +.+...+..+..++...|
T Consensus 88 ~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 88 TRKAAALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 666777777777777777777666652 223344444555444433
No 150
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.02 E-value=5.5e-09 Score=81.15 Aligned_cols=160 Identities=13% Similarity=-0.074 Sum_probs=105.1
Q ss_pred HHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCC---CCChHHHHHHHHHH
Q 016027 43 YARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSW---APTVRVYNILLNGW 119 (396)
Q Consensus 43 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~l~~~~ 119 (396)
+...|++++|.+.++.+... .+....++..++..+...|++++|...++++....... .....++..+...+
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~ 76 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAH-----PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVE 76 (203)
T ss_dssp -----CHHHHHHHHHHHHTS-----TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHhcCC-----hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 35678999999965555442 13567788899999999999999999999887632111 12345677788888
Q ss_pred HhcCChhHHHHHHHHHHhC----CCCC--ChhHHHHHHHHHHccCCHHHHHHHHHHHHHcC---CCCC--HHHHHHHHHH
Q 016027 120 FRSKNVKDAERFWLEMRKE----NVTP--NVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEG---IEPN--AIVYNTVIDG 188 (396)
Q Consensus 120 ~~~~~~~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~--~~~~~~l~~~ 188 (396)
...|++++|...+++.... +..+ ....+..+...+...|++++|...+++..+.. -.+. ..++..+..+
T Consensus 77 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 156 (203)
T 3gw4_A 77 RMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDL 156 (203)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 8889998888888876553 1111 23456677777888888888888887766421 0111 2234566667
Q ss_pred HHHcCCHHHHHHHHHHHHh
Q 016027 189 LVEAGRFEEVSGMMERFLV 207 (396)
Q Consensus 189 ~~~~~~~~~a~~~~~~~~~ 207 (396)
+...|++++|...+++..+
T Consensus 157 ~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 157 AQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCcCHHHHHHHHHHHHH
Confidence 7777777777777766654
No 151
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.01 E-value=3.4e-08 Score=68.94 Aligned_cols=110 Identities=17% Similarity=0.088 Sum_probs=88.3
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHH
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVY 112 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 112 (396)
...+..++..+...|++++|+..|+++.... |.++.++..++..+...|++++|...++++....|. +...+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~ 75 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-----PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD---WGKGY 75 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-----CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc---cHHHH
Confidence 4578888899999999999999999988864 667888888999999999999999999998876543 67788
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHH
Q 016027 113 NILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLV 151 (396)
Q Consensus 113 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 151 (396)
..+..++...|++++|...|++..+.... +...+..+.
T Consensus 76 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~ 113 (118)
T 1elw_A 76 SRKAAALEFLNRFEEAKRTYEEGLKHEAN-NPQLKEGLQ 113 (118)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHH
Confidence 88888888999999999999888876432 444444443
No 152
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.01 E-value=3.2e-08 Score=69.82 Aligned_cols=113 Identities=20% Similarity=0.270 Sum_probs=69.0
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHH
Q 016027 72 ASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLV 151 (396)
Q Consensus 72 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 151 (396)
..++..++..+...|++++|.++|+++....+. +...+..+...+...|++++|...|+++.... +.+..++..+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 84 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN---NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLG 84 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC---cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHH
Confidence 455666677777777777777777776665332 45566666666777777777777777666543 22455666666
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 016027 152 EGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGL 189 (396)
Q Consensus 152 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 189 (396)
..+...|++++|...++++.+.. +.+...+..+..++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 121 (125)
T 1na0_A 85 NAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAK 121 (125)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 66666666666666666666553 23334444444333
No 153
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.00 E-value=1.3e-08 Score=72.61 Aligned_cols=121 Identities=12% Similarity=0.048 Sum_probs=75.6
Q ss_pred CCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHH
Q 016027 69 DSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYG 148 (396)
Q Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 148 (396)
+.+...+..++..+...|++++|...|+++....|. +...+..+..++...|++++|...+++...... .+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~ 84 (131)
T 2vyi_A 9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPA---NAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP-AYSKAYG 84 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHH
T ss_pred hhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc-cCHHHHH
Confidence 344556666777777777777777777777665432 556666677777777777777777777665532 2455666
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 016027 149 TLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGR 194 (396)
Q Consensus 149 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 194 (396)
.+..++...|++++|...+++..+.. +.+...+..+..++...|+
T Consensus 85 ~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 85 RMGLALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 66666666666666666666666553 3344555555555555444
No 154
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.98 E-value=2.5e-08 Score=74.55 Aligned_cols=99 Identities=12% Similarity=0.027 Sum_probs=90.1
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHH
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVY 112 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 112 (396)
...|..++..+...|++++|+..|+++.... |.+..++..++.+|...|++++|+..|+++...+|. +...|
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~ 82 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA-----PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK---YSKAW 82 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CHHHH
Confidence 5688999999999999999999999999985 778899999999999999999999999999988655 68889
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCC
Q 016027 113 NILLNGWFRSKNVKDAERFWLEMRKEN 139 (396)
Q Consensus 113 ~~l~~~~~~~~~~~~a~~~~~~~~~~~ 139 (396)
..+..++...|++++|...|++.++..
T Consensus 83 ~~lg~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 83 SRLGLARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 999999999999999999999988763
No 155
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.98 E-value=5.7e-09 Score=75.95 Aligned_cols=101 Identities=14% Similarity=-0.053 Sum_probs=82.8
Q ss_pred CCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHH
Q 016027 69 DSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYG 148 (396)
Q Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 148 (396)
|.+...+..++..+...|++++|...|+++...+|. +...|..+..++...|++++|+..|++.....+. +...+.
T Consensus 15 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~ 90 (142)
T 2xcb_A 15 EDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY---DARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPF 90 (142)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHH
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc---cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHH
Confidence 556677788888888899999999999988887554 7778888888888899999999999888876533 667778
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHc
Q 016027 149 TLVEGYCRLRRVDRAIRLVKEMRKE 173 (396)
Q Consensus 149 ~l~~~~~~~~~~~~a~~~~~~~~~~ 173 (396)
.+..++...|++++|++.|+...+.
T Consensus 91 ~lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 91 HAAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8888888888888888888888765
No 156
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.98 E-value=1.9e-08 Score=72.58 Aligned_cols=99 Identities=13% Similarity=-0.056 Sum_probs=83.0
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHH
Q 016027 32 SKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRV 111 (396)
Q Consensus 32 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 111 (396)
+...+..++..+...|++++|+..|+++.... |.++.++..++.++...|++++|...++++...+|. +...
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~ 79 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-----PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ---SVKA 79 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-----cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch---hHHH
Confidence 46788888889999999999999999888874 677888888888888999999999999888887554 6778
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhC
Q 016027 112 YNILLNGWFRSKNVKDAERFWLEMRKE 138 (396)
Q Consensus 112 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 138 (396)
+..+..++...|++++|...|++..+.
T Consensus 80 ~~~l~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 80 HFFLGQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 888888888888888888888887754
No 157
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.98 E-value=1.7e-06 Score=71.45 Aligned_cols=171 Identities=8% Similarity=-0.024 Sum_probs=109.0
Q ss_pred HHHcCCHH-HHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCC----------hHHHHHHHHHHhhccCCCCCChHH
Q 016027 43 YARAGMVE-AAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGR----------VKAASEYFHKRKELDQSWAPTVRV 111 (396)
Q Consensus 43 ~~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~ 111 (396)
..+.|.++ +|+++++.+...+ |.+..+|+.-..++...+. +++++.+++.+...+|. +..+
T Consensus 39 ~~~~~e~s~eaL~~t~~~L~~n-----P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK---ny~a 110 (331)
T 3dss_A 39 KRQAGELDESVLELTSQILGAN-----PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK---SYGT 110 (331)
T ss_dssp HHHTTCCSHHHHHHHHHHHTTC-----TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT---CHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHC-----chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC---CHHH
Confidence 34556665 6888888888875 7777777766666555443 56777777777776544 6677
Q ss_pred HHHHHHHHHhcC--ChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 016027 112 YNILLNGWFRSK--NVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRR-VDRAIRLVKEMRKEGIEPNAIVYNTVIDG 188 (396)
Q Consensus 112 ~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 188 (396)
|+.-.-.+...+ ++++++.+++++.+..+. |..+|+.-...+...|. ++++++.++.+++.. +-|...|+.....
T Consensus 111 W~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~l 188 (331)
T 3dss_A 111 WHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCL 188 (331)
T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 776666666666 367777777777776544 66677666666666666 477777777777764 4455666655555
Q ss_pred HHHc--------------CCHHHHHHHHHHHHhcCCCCchhhHHHHHHHH
Q 016027 189 LVEA--------------GRFEEVSGMMERFLVCEPGPTMVTYTSLVKGY 224 (396)
Q Consensus 189 ~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 224 (396)
+... +.++++++.+.+.....|. |..+|+-+-..+
T Consensus 189 l~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll 237 (331)
T 3dss_A 189 LPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLL 237 (331)
T ss_dssp HHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHH
T ss_pred HHHhhhccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 4444 3355666666666665443 555555443333
No 158
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.97 E-value=7.7e-09 Score=72.78 Aligned_cols=96 Identities=11% Similarity=-0.024 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHH
Q 016027 35 TFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNI 114 (396)
Q Consensus 35 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 114 (396)
.+..++..+.+.|++++|+..|+++.+.. |.+..++..++.++...|++++|+..|+++...+|. +...+..
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-----P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~---~~~~~~~ 90 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE-----PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK---DIAVHAA 90 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHH
Confidence 57788889999999999999999999875 788899999999999999999999999999988665 6778889
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhC
Q 016027 115 LLNGWFRSKNVKDAERFWLEMRKE 138 (396)
Q Consensus 115 l~~~~~~~~~~~~a~~~~~~~~~~ 138 (396)
+..++...|++++|+..|++.++.
T Consensus 91 la~~~~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 91 LAVSHTNEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999998865
No 159
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.97 E-value=1.8e-08 Score=78.00 Aligned_cols=122 Identities=12% Similarity=-0.019 Sum_probs=69.3
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCch----------------hHHHHHHHHHHHcCChHHHHHHHHH
Q 016027 34 DTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGA----------------SLFEILLDSLCKQGRVKAASEYFHK 97 (396)
Q Consensus 34 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~A~~~~~~ 97 (396)
..+..++..+...|++++|+..|+++.... |.++ .++..++.++...|++++|+..+++
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 113 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFF-----IHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASK 113 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-----TTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-----hcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 456666667777777777777777766643 2222 4556666666666666666666666
Q ss_pred HhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHH
Q 016027 98 RKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAI 164 (396)
Q Consensus 98 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 164 (396)
+...+|. +...+..+..++...|++++|...|++..+.... +...+..+..++...++..++.
T Consensus 114 al~~~p~---~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 114 VLKIDKN---NVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HHHHSTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHhCcc---cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHHHHHHHH
Confidence 6655332 4555666666666666666666666665554322 4445555555554444444433
No 160
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.96 E-value=1.6e-08 Score=72.08 Aligned_cols=114 Identities=15% Similarity=0.147 Sum_probs=89.6
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCC----
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPT---- 108 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---- 108 (396)
...+..++..+...|++++|+..|+++.... |.++.++..++..+...|++++|...++++....+...++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-----~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 78 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-----PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQI 78 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-----CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHH
Confidence 4578888999999999999999999998874 6778888899999999999999999999988775443333
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHH
Q 016027 109 VRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEG 153 (396)
Q Consensus 109 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 153 (396)
..++..+..++...|++++|...|++..+.. |+......+..+
T Consensus 79 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~ 121 (131)
T 1elr_A 79 AKAYARIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHHHH
Confidence 6677888888888888888888888887753 455555444443
No 161
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.95 E-value=2.8e-09 Score=75.06 Aligned_cols=93 Identities=15% Similarity=0.044 Sum_probs=81.8
Q ss_pred hhhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHH
Q 016027 3 KVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSL 82 (396)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 82 (396)
..+.+.|++++|+..|+++++. .|+ +..+|..++.++...|++++|+..|+++.... |.++.++..++.++
T Consensus 25 ~~~~~~g~~~~A~~~~~~al~~--~P~--~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-----P~~~~~~~~la~~~ 95 (121)
T 1hxi_A 25 LSMLKLANLAEAALAFEAVCQK--EPE--REEAWRSLGLTQAENEKDGLAIIALNHARMLD-----PKDIAVHAALAVSH 95 (121)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--STT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH--CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHH
Confidence 4677899999999999999984 555 47899999999999999999999999999986 88889999999999
Q ss_pred HHcCChHHHHHHHHHHhhccCC
Q 016027 83 CKQGRVKAASEYFHKRKELDQS 104 (396)
Q Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~ 104 (396)
...|++++|+..|+++.+.+|.
T Consensus 96 ~~~g~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC----
T ss_pred HHcCCHHHHHHHHHHHHHhCcC
Confidence 9999999999999999887543
No 162
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.95 E-value=1.6e-08 Score=69.85 Aligned_cols=101 Identities=15% Similarity=0.058 Sum_probs=80.1
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHH
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVY 112 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 112 (396)
..++..++..+...|++++|+..|+++.+.. |.+..++..++.++...|++++|.+.|+++.+..+. ..+...+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~ 79 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-----PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIED-EYNKDVW 79 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC-TTCHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-----cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-cchHHHH
Confidence 4577888888888888888888888888764 667778888888888888888888888888876432 1256778
Q ss_pred HHHHHHHHhc-CChhHHHHHHHHHHhCC
Q 016027 113 NILLNGWFRS-KNVKDAERFWLEMRKEN 139 (396)
Q Consensus 113 ~~l~~~~~~~-~~~~~a~~~~~~~~~~~ 139 (396)
..+..++... |++++|.+.++......
T Consensus 80 ~~l~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 80 AAKADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHHHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 8888888888 88888888888887764
No 163
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.94 E-value=4.9e-08 Score=69.26 Aligned_cols=99 Identities=9% Similarity=0.001 Sum_probs=73.6
Q ss_pred chhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHH
Q 016027 71 GASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTL 150 (396)
Q Consensus 71 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 150 (396)
+...+..++..+.+.|++++|+..|+++...+|. +...|..+..++.+.|++++|+..|++..+..+. +...+..+
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l 78 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE---DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRK 78 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHH
Confidence 3456777777888888888888888888776544 6677777888888888888888888877776433 56677777
Q ss_pred HHHHHccCCHHHHHHHHHHHHHc
Q 016027 151 VEGYCRLRRVDRAIRLVKEMRKE 173 (396)
Q Consensus 151 ~~~~~~~~~~~~a~~~~~~~~~~ 173 (396)
..++...|++++|+..+++..+.
T Consensus 79 g~~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 79 ATAQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCHHHHHHHHHHHHHh
Confidence 77777777777777777777665
No 164
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.93 E-value=3.3e-09 Score=82.15 Aligned_cols=149 Identities=9% Similarity=-0.043 Sum_probs=69.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCC--C--------
Q 016027 39 LIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAP--T-------- 108 (396)
Q Consensus 39 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~-------- 108 (396)
.+......|+++++.+.|+...... +.....+..++..+...|++++|...|+++....+.... .
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 84 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEK-----VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKK 84 (198)
T ss_dssp ------------CCCSGGGCCHHHH-----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHH
T ss_pred hhhhhhhhhhccccCchhhCCHHHH-----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHH
Confidence 4445555666666666665433321 334556677777777888888888888877765433110 0
Q ss_pred ---hHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 016027 109 ---VRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTV 185 (396)
Q Consensus 109 ---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 185 (396)
...|..+..++...|++++|+..+++..+... .+...+..+..++...|++++|+..|++..+.. +.+...+..+
T Consensus 85 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 162 (198)
T 2fbn_A 85 NIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK-NNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSY 162 (198)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHH
Confidence 13444445555555555555555555444321 234444444444445555555555554444432 2233333344
Q ss_pred HHHHHHcCC
Q 016027 186 IDGLVEAGR 194 (396)
Q Consensus 186 ~~~~~~~~~ 194 (396)
..++...++
T Consensus 163 ~~~~~~~~~ 171 (198)
T 2fbn_A 163 ELCVNKLKE 171 (198)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 443333333
No 165
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.93 E-value=3.2e-08 Score=70.30 Aligned_cols=106 Identities=16% Similarity=0.148 Sum_probs=76.3
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC--CC----hh
Q 016027 72 ASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVT--PN----VV 145 (396)
Q Consensus 72 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~ 145 (396)
..++..++..+.+.|++++|++.|+++.+.+|. +...|..+..++.+.|++++|+..|++.++.... ++ ..
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~---~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~ 84 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPS---NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAK 84 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHH
Confidence 445777888888999999999999988887655 6778888888888889999998888887764211 11 13
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHH
Q 016027 146 TYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVY 182 (396)
Q Consensus 146 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 182 (396)
+|..+..++...|++++|++.|++.++. .|++.+.
T Consensus 85 ~~~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~ 119 (127)
T 4gcn_A 85 AMSRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELV 119 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHH
Confidence 4556666667777777777777776654 3454443
No 166
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.88 E-value=1.5e-07 Score=68.71 Aligned_cols=112 Identities=16% Similarity=-0.008 Sum_probs=88.6
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCc---hhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCC
Q 016027 32 SKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSG---ASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPT 108 (396)
Q Consensus 32 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 108 (396)
+...+..++..+...|++++|+..|+++.+.. |.+ ..++..++.++...|++++|+..++++...+|. +
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-----~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---~ 98 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD-----ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG---D 98 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC-----CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC---C
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc-----ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc---C
Confidence 46788899999999999999999999998863 444 678888899999999999999999998876543 6
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHH
Q 016027 109 VRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVE 152 (396)
Q Consensus 109 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 152 (396)
...+..+..++...|++++|...|++..+.... +...+..+..
T Consensus 99 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 141 (148)
T 2dba_A 99 VKALYRRSQALEKLGRLDQAVLDLQRCVSLEPK-NKVFQEALRN 141 (148)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSS-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHH
Confidence 778888888889999999999999888876322 4444444433
No 167
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.88 E-value=6e-09 Score=92.10 Aligned_cols=119 Identities=15% Similarity=-0.003 Sum_probs=93.1
Q ss_pred hhhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHH
Q 016027 3 KVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSL 82 (396)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 82 (396)
..+.+.|++++|+..|+++++. .|+ +..+|..++.++.+.|++++|++.++++.+.. |.+..++..++.+|
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~--~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-----p~~~~~~~~lg~~~ 84 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIEL--NPS--NAIYYGNRSLAYLRTECYGYALGDATRAIELD-----KKYIKGYYRRAASN 84 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHH--CTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-----TTCHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHh--CCc--cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHH
Confidence 4567889999999999998874 454 36788999999999999999999999998875 77788899999999
Q ss_pred HHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHH--HHhcCChhHHHHHHH
Q 016027 83 CKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNG--WFRSKNVKDAERFWL 133 (396)
Q Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~ 133 (396)
...|++++|.+.|+++.+.+|. +...+..+..+ +.+.|++++|++.++
T Consensus 85 ~~~g~~~eA~~~~~~al~~~p~---~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 85 MALGKFRAALRDYETVVKVKPH---DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHTCHHHHHHHHHHHHHHSTT---CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999998887654 44455555555 778889999998888
No 168
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.86 E-value=1.1e-07 Score=67.69 Aligned_cols=100 Identities=12% Similarity=-0.011 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCch---hHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHH
Q 016027 35 TFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGA---SLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRV 111 (396)
Q Consensus 35 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 111 (396)
++..++..+...|++++|+..|+++.... |.++ .++..++.++...|++++|...|+++....|........
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 78 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELY-----PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGG 78 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHC-----CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHH
Confidence 56778888889999999999999888864 4444 678888899999999999999999988875542222567
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 016027 112 YNILLNGWFRSKNVKDAERFWLEMRKEN 139 (396)
Q Consensus 112 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 139 (396)
+..+..++...|++++|...|+++....
T Consensus 79 ~~~la~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 79 LLKLGLSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 7888888888999999999998888763
No 169
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.86 E-value=8.9e-09 Score=72.06 Aligned_cols=91 Identities=13% Similarity=-0.039 Sum_probs=74.4
Q ss_pred hccCchhHHHHHHHHhCCCC-CCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHc
Q 016027 7 KAKEFDSAWCLLLDKIGGHE-VPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQ 85 (396)
Q Consensus 7 ~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 85 (396)
..|++++|+..|.++++.+. .|+ +..++..++.++...|++++|+..|+++.+.. |.++.++..++.++...
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~--~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~l~~~~~~~ 74 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKD--LAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-----PNHQALRVFYAMVLYNL 74 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCcc--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCchHHHHHHHHHHHHc
Confidence 46899999999999998531 243 36789999999999999999999999999975 77889999999999999
Q ss_pred CChHHHHHHHHHHhhccCC
Q 016027 86 GRVKAASEYFHKRKELDQS 104 (396)
Q Consensus 86 ~~~~~A~~~~~~~~~~~~~ 104 (396)
|++++|...|+++....|.
T Consensus 75 g~~~~A~~~~~~al~~~p~ 93 (117)
T 3k9i_A 75 GRYEQGVELLLKIIAETSD 93 (117)
T ss_dssp TCHHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHhCCC
Confidence 9999999999999887544
No 170
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.85 E-value=2.2e-07 Score=64.68 Aligned_cols=97 Identities=13% Similarity=0.052 Sum_probs=59.1
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHH
Q 016027 73 SLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVE 152 (396)
Q Consensus 73 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 152 (396)
..+..++..+...|++++|...|+++....|. +...+..+..++...|++++|...+++..+... .+...+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~ 80 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPH---NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC---cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-ccHHHHHHHHH
Confidence 44556666666667777777777666655332 455666666666666666666666666655432 24555555666
Q ss_pred HHHccCCHHHHHHHHHHHHHc
Q 016027 153 GYCRLRRVDRAIRLVKEMRKE 173 (396)
Q Consensus 153 ~~~~~~~~~~a~~~~~~~~~~ 173 (396)
++...|++++|.+.++...+.
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHhhHHHHHHHHHHHHHc
Confidence 666666666666666665554
No 171
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.82 E-value=2.5e-07 Score=81.02 Aligned_cols=208 Identities=9% Similarity=-0.056 Sum_probs=150.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCC------------CchhHHHHHHHHHHHcCChHHHHHHHHHHhhcc
Q 016027 35 TFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFD------------SGASLFEILLDSLCKQGRVKAASEYFHKRKELD 102 (396)
Q Consensus 35 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 102 (396)
+-..-++.+...|++++|++.|..+.+.....+.. ....++..++..|...|++++|.+.+..+....
T Consensus 6 ~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~ 85 (434)
T 4b4t_Q 6 SKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYM 85 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 55566788899999999999999998864321100 012347889999999999999999999987654
Q ss_pred CCCCCC---hHHHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCC-ChhHHHHHHHHHHccCCHHHHHHHHHHHHHc-
Q 016027 103 QSWAPT---VRVYNILLNGWFRSKNVKDAERFWLEMRKE----NVTP-NVVTYGTLVEGYCRLRRVDRAIRLVKEMRKE- 173 (396)
Q Consensus 103 ~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~- 173 (396)
+..... ..+.+.+...+...|+++++..+++..... +..+ -..++..+...+...|++++|..+++.+...
T Consensus 86 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 165 (434)
T 4b4t_Q 86 MQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREF 165 (434)
T ss_dssp HTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHH
Confidence 332211 122334444555678999999999887542 2222 2457788999999999999999999988754
Q ss_pred -CC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCC---chhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 016027 174 -GI---EPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCE---PGP---TMVTYTSLVKGYCKAGDLEGASKILKMMIS 242 (396)
Q Consensus 174 -~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 242 (396)
+. +....++..++..|...|++++|..++++..... ..| -...+..+...+...+++++|...|.+..+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 166 KKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp TTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 11 1224577888899999999999999998876531 112 134566777788889999999988877754
No 172
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.82 E-value=1.9e-07 Score=81.75 Aligned_cols=205 Identities=12% Similarity=0.023 Sum_probs=146.3
Q ss_pred hhhhhccCchhHHHHHHHHhCCCCCCCCC-C------------hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCC
Q 016027 3 KVLAKAKEFDSAWCLLLDKIGGHEVPDFV-S------------KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFD 69 (396)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 69 (396)
+.+.+.|++++|++.|.++++........ + ..++..++..|...|++++|.+.+..+.......+-.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 45678999999999999998754322100 0 1258899999999999999999999988753211000
Q ss_pred -CchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCC--C-CChHHHHHHHHHHHhcCChhHHHHHHHHHHhC--CCC--
Q 016027 70 -SGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSW--A-PTVRVYNILLNGWFRSKNVKDAERFWLEMRKE--NVT-- 141 (396)
Q Consensus 70 -~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~-- 141 (396)
....+...+...+...|+++.|.++++......+.. . .-..++..++..+...|++++|..+++++... +..
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 111234455556666799999999998876542211 1 12457788999999999999999999987653 111
Q ss_pred C-ChhHHHHHHHHHHccCCHHHHHHHHHHHHHc----CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 016027 142 P-NVVTYGTLVEGYCRLRRVDRAIRLVKEMRKE----GIEPN--AIVYNTVIDGLVEAGRFEEVSGMMERFLV 207 (396)
Q Consensus 142 ~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 207 (396)
+ ...++..+++.|...|++++|..+++..... +.++. ...+..+...+...|++++|...|.+...
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 1 2457888999999999999999999887653 11111 23455666777888999999988877754
No 173
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.81 E-value=1.3e-07 Score=68.13 Aligned_cols=101 Identities=10% Similarity=-0.024 Sum_probs=79.4
Q ss_pred CCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHH
Q 016027 69 DSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYG 148 (396)
Q Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 148 (396)
+.++..+..++..+...|++++|...|+.+...+|. +...|..+..++...|++++|...+++..+.... +...+.
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~ 81 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL---VAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHF 81 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHH
Confidence 556777888888888888888888888888876544 6777888888888888888888888888776433 667777
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHc
Q 016027 149 TLVEGYCRLRRVDRAIRLVKEMRKE 173 (396)
Q Consensus 149 ~l~~~~~~~~~~~~a~~~~~~~~~~ 173 (396)
.+..++...|++++|+..+++..+.
T Consensus 82 ~l~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 82 FLGQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 8888888888888888888877664
No 174
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.81 E-value=1.9e-07 Score=69.71 Aligned_cols=101 Identities=5% Similarity=-0.083 Sum_probs=82.7
Q ss_pred CCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHH
Q 016027 69 DSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYG 148 (396)
Q Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 148 (396)
+.+...+..++..+...|++++|++.|+++...+|. +...|..+..++.+.|++++|+..|++.++.... +...|.
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~ 83 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA---NPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWS 83 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHH
Confidence 456677888888888999999999999988887554 6778888888888888899998888888876433 677888
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHc
Q 016027 149 TLVEGYCRLRRVDRAIRLVKEMRKE 173 (396)
Q Consensus 149 ~l~~~~~~~~~~~~a~~~~~~~~~~ 173 (396)
.+..++...|++++|+..|++.++.
T Consensus 84 ~lg~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 84 RLGLARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHh
Confidence 8888888888888888888888776
No 175
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.81 E-value=1.4e-07 Score=83.09 Aligned_cols=123 Identities=11% Similarity=-0.035 Sum_probs=81.6
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCc---------------hhHHHHHHHHHHHcCChHHHHHHHHH
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSG---------------ASLFEILLDSLCKQGRVKAASEYFHK 97 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~ 97 (396)
...+..++..+.+.|++++|+..|+++.... |.+ ..+|..++.+|.+.|++++|+..+++
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-----p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~ 342 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-----EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDK 342 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-----cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 4467777888888888888888888887764 333 45666777777777777777777777
Q ss_pred HhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHH
Q 016027 98 RKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAI 164 (396)
Q Consensus 98 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 164 (396)
+...+|. +...|..+..++...|++++|+..|++.++.... +...+..+..++.+.++.+++.
T Consensus 343 al~~~p~---~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 343 ALGLDSA---NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHSTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCc---cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 7766543 5666777777777777777777777776665322 4456666666666666665554
No 176
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.79 E-value=1.3e-07 Score=65.27 Aligned_cols=102 Identities=10% Similarity=0.056 Sum_probs=77.0
Q ss_pred CCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC--ChhH
Q 016027 69 DSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTP--NVVT 146 (396)
Q Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~ 146 (396)
|.+..++..++..+...|++++|...|+++....+. +...+..+..++...|++++|...|++..+.. +. +...
T Consensus 3 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~ 78 (112)
T 2kck_A 3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE---ESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDV 78 (112)
T ss_dssp CSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHH
T ss_pred CCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHH
Confidence 455667777888888888888888888888776443 56777778888888888888888888877753 22 4667
Q ss_pred HHHHHHHHHcc-CCHHHHHHHHHHHHHcC
Q 016027 147 YGTLVEGYCRL-RRVDRAIRLVKEMRKEG 174 (396)
Q Consensus 147 ~~~l~~~~~~~-~~~~~a~~~~~~~~~~~ 174 (396)
+..+..++... |++++|.+.++...+..
T Consensus 79 ~~~l~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 79 WAAKADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHHHHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 77777788888 88888888888777663
No 177
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.79 E-value=6.8e-08 Score=68.77 Aligned_cols=110 Identities=15% Similarity=0.150 Sum_probs=74.6
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC--CC----hh
Q 016027 72 ASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVT--PN----VV 145 (396)
Q Consensus 72 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~ 145 (396)
+..+..++..+...|++++|...|+++....|. +...+..+...+...|++++|...+++....... ++ ..
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 80 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPT---NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAK 80 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc---cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHH
Confidence 455777778888888888888888888776433 5667777777888888888888888777664211 11 55
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 016027 146 TYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVI 186 (396)
Q Consensus 146 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 186 (396)
++..+..++...|++++|.+.++...+. .|+......+.
T Consensus 81 ~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~ 119 (131)
T 1elr_A 81 AYARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQ 119 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHH
Confidence 6666677777777777777777777665 23444444433
No 178
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.78 E-value=1.9e-07 Score=69.50 Aligned_cols=103 Identities=9% Similarity=-0.040 Sum_probs=82.0
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhccccc---C----------CCCchhHHHHHHHHHHHcCChHHHHHHHHHHh
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVK---N----------FDSGASLFEILLDSLCKQGRVKAASEYFHKRK 99 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~----------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 99 (396)
...+...+..+.+.|++++|+..|.++....... . .|.+..++..++.+|.+.|++++|+..++++.
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 4578889999999999999999999998861100 0 14455778888888888888888888888888
Q ss_pred hccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 016027 100 ELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKE 138 (396)
Q Consensus 100 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 138 (396)
..+|. +...|..+..++...|++++|...|++....
T Consensus 91 ~~~p~---~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KREET---NEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHSTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcCCc---chHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 87654 6778888888888888888888888888775
No 179
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.78 E-value=6.4e-09 Score=91.92 Aligned_cols=125 Identities=17% Similarity=0.046 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHH
Q 016027 35 TFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNI 114 (396)
Q Consensus 35 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 114 (396)
++..++..+.+.|++++|++.|+++.+.. |.+..++..++.+|.+.|++++|++.++++.+.+|. +...|..
T Consensus 8 ~~~~lg~~~~~~g~~~~A~~~~~~Al~~~-----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~---~~~~~~~ 79 (477)
T 1wao_1 8 ELKTQANDYFKAKDYENAIKFYSQAIELN-----PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK---YIKGYYR 79 (477)
T ss_dssp TSSSSSSSTTTTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT---CHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhC-----CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---CHHHHHH
Confidence 45556677888999999999999999985 778999999999999999999999999999987654 7889999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHH--HHccCCHHHHHHHHH
Q 016027 115 LLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEG--YCRLRRVDRAIRLVK 168 (396)
Q Consensus 115 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~ 168 (396)
+..++...|++++|++.|++..+.... +...+..+..+ +.+.|++++|++.++
T Consensus 80 lg~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 80 RAASNMALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999999886433 44566666555 888899999999988
No 180
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.77 E-value=1.4e-08 Score=89.30 Aligned_cols=158 Identities=15% Similarity=0.082 Sum_probs=78.2
Q ss_pred CCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChh
Q 016027 47 GMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVK 126 (396)
Q Consensus 47 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 126 (396)
+++++|++.|+...... |.....+..++..+.+.|++++|+..|+++....+... +. . -+
T Consensus 248 ~~~~~A~~~~~~~~~~~-----~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~-~~-------------~-~~ 307 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEK-----LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEY-GL-------------S-EK 307 (457)
T ss_dssp EEEECCCCGGGSCHHHH-----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCC-SC-------------C-HH
T ss_pred hhcccCcchhhcCHHHH-----HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccc-cC-------------C-hH
Confidence 34455555555444432 44566777888888888888888888888877654421 00 0 00
Q ss_pred HHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 016027 127 DAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFL 206 (396)
Q Consensus 127 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 206 (396)
... +... ....+|..+..++.+.|++++|+..+++.++.. +.+...+..+..+|...|++++|+..|++++
T Consensus 308 ~~~----~~~~----~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al 378 (457)
T 1kt0_A 308 ESK----ASES----FLLAAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVL 378 (457)
T ss_dssp HHH----HHHH----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHH----HHHH----HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 000 0000 012344444455555555555555555554442 2334444555555555555555555555555
Q ss_pred hcCCCCchhhHHHHHHHHHhcCChHHHH
Q 016027 207 VCEPGPTMVTYTSLVKGYCKAGDLEGAS 234 (396)
Q Consensus 207 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 234 (396)
+..+. +...+..+..++.+.++.+++.
T Consensus 379 ~l~P~-~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 379 EVNPQ-NKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp TTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 44331 3344444555555555444443
No 181
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.77 E-value=1.9e-07 Score=67.66 Aligned_cols=102 Identities=12% Similarity=-0.060 Sum_probs=75.4
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhccccc-------CCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhc----
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVK-------NFDSGASLFEILLDSLCKQGRVKAASEYFHKRKEL---- 101 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---- 101 (396)
...+...+..+...|++++|+..|+++++..+.. ..|.+..+|..++.++.+.|++++|+..++++...
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 3467788889999999999999999999986320 00001237888888888888888888888888776
Q ss_pred ---cCCCCCChHHH----HHHHHHHHhcCChhHHHHHHHHHHh
Q 016027 102 ---DQSWAPTVRVY----NILLNGWFRSKNVKDAERFWLEMRK 137 (396)
Q Consensus 102 ---~~~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~ 137 (396)
+|. +...| .....++...|++++|+..|++.++
T Consensus 91 ~e~~pd---~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 91 GELNQD---EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp CCTTST---HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCCCc---hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 554 55666 7777777777777777777777765
No 182
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.77 E-value=1.6e-07 Score=79.96 Aligned_cols=127 Identities=11% Similarity=-0.002 Sum_probs=82.2
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHhhccccc-----------CCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhcc
Q 016027 34 DTFVILIRRYARAGMVEAAIWTFEFANNLDMVK-----------NFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELD 102 (396)
Q Consensus 34 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 102 (396)
..+..++..+.+.|++++|+..|+++.+..... ..+.+..+|..++.+|.+.|++++|++.++++.+.+
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 358888999999999999999999998731000 014445666667777777777777777777776654
Q ss_pred CCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHH
Q 016027 103 QSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAI 164 (396)
Q Consensus 103 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 164 (396)
|. +...|..+..++...|++++|+..|++..+.... +...+..+..++...++.+++.
T Consensus 304 p~---~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 304 PS---NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred ch---hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 33 5566666666677777777777777766655322 4455555555555555554443
No 183
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.72 E-value=5.3e-07 Score=65.69 Aligned_cols=104 Identities=13% Similarity=0.037 Sum_probs=67.7
Q ss_pred CCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHH
Q 016027 69 DSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYG 148 (396)
Q Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 148 (396)
+.+...+..++..+...|++++|.+.|+++....+........|..+..++...|++++|+..+++..+... .+...+.
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~ 103 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG-GDVKALY 103 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS-CCHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc-cCHHHHH
Confidence 445666777777777777777777777777765322000055666677777777777777777777666532 2455666
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHc
Q 016027 149 TLVEGYCRLRRVDRAIRLVKEMRKE 173 (396)
Q Consensus 149 ~l~~~~~~~~~~~~a~~~~~~~~~~ 173 (396)
.+..++...|++++|...+++..+.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 6666677777777777777766665
No 184
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.71 E-value=8.2e-07 Score=63.01 Aligned_cols=98 Identities=15% Similarity=0.060 Sum_probs=72.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC---hhHHHHHH
Q 016027 75 FEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPN---VVTYGTLV 151 (396)
Q Consensus 75 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~ 151 (396)
+..++..+...|++++|.+.|+.+....|........+..+..++...|++++|...|+++....+. + ...+..+.
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la 83 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHH
Confidence 5567777888888888888888888765542222257777788888888888888888888775422 3 55667777
Q ss_pred HHHHccCCHHHHHHHHHHHHHc
Q 016027 152 EGYCRLRRVDRAIRLVKEMRKE 173 (396)
Q Consensus 152 ~~~~~~~~~~~a~~~~~~~~~~ 173 (396)
.++...|++++|...++.+.+.
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 7788888888888888887776
No 185
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.71 E-value=6.4e-08 Score=72.12 Aligned_cols=97 Identities=12% Similarity=0.036 Sum_probs=82.8
Q ss_pred hhhhhccCchhHHHHHHHHhCCCC------CC--------CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCC
Q 016027 3 KVLAKAKEFDSAWCLLLDKIGGHE------VP--------DFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNF 68 (396)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~~~~------~p--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 68 (396)
..+.+.|++++|+..|.+++.... .| ++....+|..++.++...|++++|+..+++++..+
T Consensus 19 ~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~----- 93 (162)
T 3rkv_A 19 NELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE----- 93 (162)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-----
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-----
Confidence 467889999999999999987400 11 11134689999999999999999999999999986
Q ss_pred CCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCC
Q 016027 69 DSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQS 104 (396)
Q Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 104 (396)
|.++.+|..++.+|...|++++|...|+++...+|+
T Consensus 94 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~ 129 (162)
T 3rkv_A 94 ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA 129 (162)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCC
Confidence 888999999999999999999999999999988554
No 186
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.70 E-value=4.9e-08 Score=68.23 Aligned_cols=90 Identities=11% Similarity=0.024 Sum_probs=70.9
Q ss_pred HcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCC
Q 016027 45 RAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKN 124 (396)
Q Consensus 45 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 124 (396)
..|++++|+..|+++.+.+. +-|.+..++..++.+|...|++++|++.|+++.+.+|. +...+..+..++...|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~--~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~g~ 76 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGL--QGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN---HQALRVFYAMVLYNLGR 76 (117)
T ss_dssp -----CCCHHHHHHHHSSCC--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTC
T ss_pred CCCcHHHHHHHHHHHHHcCC--CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---chHHHHHHHHHHHHcCC
Confidence 46888999999999988620 01667788899999999999999999999999887665 67788889999999999
Q ss_pred hhHHHHHHHHHHhCC
Q 016027 125 VKDAERFWLEMRKEN 139 (396)
Q Consensus 125 ~~~a~~~~~~~~~~~ 139 (396)
+++|+..|++.....
T Consensus 77 ~~~A~~~~~~al~~~ 91 (117)
T 3k9i_A 77 YEQGVELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999887753
No 187
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.69 E-value=6.3e-08 Score=70.11 Aligned_cols=95 Identities=17% Similarity=0.050 Sum_probs=81.7
Q ss_pred hhhhhccCchhHHHHHHHHhCCCCCCCC-----CCh-----hHHHHHHHHHHHcCCHHHHHHHHHHHhhc-------ccc
Q 016027 3 KVLAKAKEFDSAWCLLLDKIGGHEVPDF-----VSK-----DTFVILIRRYARAGMVEAAIWTFEFANNL-------DMV 65 (396)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~-----~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~ 65 (396)
..+.+.|++++|+..|+++++.. |+. .+. .+|..++.++...|++++|+..+++++.. +
T Consensus 19 ~~l~~~g~~eeAi~~Y~kAL~l~--p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~-- 94 (159)
T 2hr2_A 19 QRQLVAGEYDEAAANCRRAMEIS--HTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN-- 94 (159)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHH--TTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT--
T ss_pred HHHHHCCCHHHHHHHHHHHHhhC--CCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC--
Confidence 45678999999999999999853 331 012 38999999999999999999999999997 6
Q ss_pred cCCCCchhHH----HHHHHHHHHcCChHHHHHHHHHHhhccCC
Q 016027 66 KNFDSGASLF----EILLDSLCKQGRVKAASEYFHKRKELDQS 104 (396)
Q Consensus 66 ~~~~~~~~~~----~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 104 (396)
|.+..+| +..+.++...|++++|+..|+++.+.+|+
T Consensus 95 ---pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~ 134 (159)
T 2hr2_A 95 ---QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 134 (159)
T ss_dssp ---STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ---CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 7888899 99999999999999999999999887554
No 188
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.66 E-value=6.2e-08 Score=81.63 Aligned_cols=123 Identities=11% Similarity=0.020 Sum_probs=57.0
Q ss_pred hhhhhccCchhHHHHHHHHhCCCCCCCCCCh-----------------hHHHHHHHHHHHcCCHHHHHHHHHHHhhcccc
Q 016027 3 KVLAKAKEFDSAWCLLLDKIGGHEVPDFVSK-----------------DTFVILIRRYARAGMVEAAIWTFEFANNLDMV 65 (396)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 65 (396)
..+.+.|++++|+..|.+++.. .|+. . .+|..++.++.+.|++++|+..++++....
T Consensus 187 ~~~~~~g~~~~A~~~y~~Al~~--~p~~--~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-- 260 (338)
T 2if4_A 187 NSLFKEEKLEEAMQQYEMAIAY--MGDD--FMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEE-- 260 (338)
T ss_dssp HHTCSSSCCHHHHHHHHHHHHH--SCHH--HHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHC--
T ss_pred HHHHhcCCHHHHHHHHHHHHHH--hccc--hhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--
Confidence 4577899999999999998874 3431 1 145556666666666666666666665553
Q ss_pred cCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHH-HHhcCChhHHHHHHHHHHh
Q 016027 66 KNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNG-WFRSKNVKDAERFWLEMRK 137 (396)
Q Consensus 66 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~ 137 (396)
|.+..++..++.+|...|++++|...|+++...+|. +...+..+... ....+..+++...|..|..
T Consensus 261 ---p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~---~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~ 327 (338)
T 2if4_A 261 ---EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD---DKAIRRELRALAEQEKALYQKQKEMYKGIFK 327 (338)
T ss_dssp ---TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------------------
T ss_pred ---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 455555666666666666666666666665554333 33333333333 1223444455555555543
No 189
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.66 E-value=3.9e-07 Score=67.47 Aligned_cols=139 Identities=16% Similarity=0.078 Sum_probs=82.9
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccC-CCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCC---C
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKN-FDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAP---T 108 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~ 108 (396)
..++..++..+...|++++|+..++++.......+ ......++..++..+...|++++|.+.++++....+.... .
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 34677888888888999999988888877532110 0111246777888888888888888888877654221110 1
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHhC----CCC-CChhHHHHHHHHHHccCCHHHHHHHHHHHH
Q 016027 109 VRVYNILLNGWFRSKNVKDAERFWLEMRKE----NVT-PNVVTYGTLVEGYCRLRRVDRAIRLVKEMR 171 (396)
Q Consensus 109 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 171 (396)
...+..+...+...|++++|...+++..+. +.. ....++..+...+...|++++|.+.+++..
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 344566666677777777777777665432 100 012234444455555555555555555443
No 190
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.62 E-value=3.4e-06 Score=75.98 Aligned_cols=179 Identities=9% Similarity=-0.020 Sum_probs=143.8
Q ss_pred HHHcCCH-HHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCC----------hHHHHHHHHHHhhccCCCCCChHH
Q 016027 43 YARAGMV-EAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGR----------VKAASEYFHKRKELDQSWAPTVRV 111 (396)
Q Consensus 43 ~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~ 111 (396)
..+.|.+ ++|++.++++...+ |.+..+|+.-..++...|+ ++++++.++.+.+.+|. +..+
T Consensus 38 ~~~~~~~~eeal~~~~~~l~~n-----P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK---~y~a 109 (567)
T 1dce_A 38 KRQAGELDESVLELTSQILGAN-----PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK---SYGT 109 (567)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT---CHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHC-----chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC---CHHH
Confidence 3344544 57899999999986 8888899988888888887 89999999999987665 8888
Q ss_pred HHHHHHHHHhcC--ChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 016027 112 YNILLNGWFRSK--NVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLR-RVDRAIRLVKEMRKEGIEPNAIVYNTVIDG 188 (396)
Q Consensus 112 ~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 188 (396)
|+.-.-.+.+.+ +++++++.++++.+..+. +..+|+.-...+.+.| .++++++.++++++.. +-+...|+....+
T Consensus 110 W~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~l 187 (567)
T 1dce_A 110 WHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCL 187 (567)
T ss_dssp HHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHH
Confidence 988888888888 679999999999988655 8888888888888888 8899999999998875 4577777777766
Q ss_pred HHHc--------------CCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHH
Q 016027 189 LVEA--------------GRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEG 232 (396)
Q Consensus 189 ~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 232 (396)
+.+. +.++++++.++++....+. +..+|..+...+.+.+..++
T Consensus 188 l~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 188 LPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCCSC
T ss_pred HHhhcccccccccccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCccc
Confidence 6653 4578899999888887664 77788888777777766443
No 191
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.61 E-value=1.7e-07 Score=78.95 Aligned_cols=149 Identities=11% Similarity=-0.005 Sum_probs=64.8
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHH
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVY 112 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 112 (396)
...+..++..+.+.|++++|+..|+++.... |.+.. +...++++++...+ ....|
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-----p~~~~--------~~~~~~~~~~~~~l------------~~~~~ 233 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM-----GDDFM--------FQLYGKYQDMALAV------------KNPCH 233 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS-----CHHHH--------HTCCHHHHHHHHHH------------HTHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh-----ccchh--------hhhcccHHHHHHHH------------HHHHH
Confidence 3467788888888899999999999888763 32220 11122222222111 01245
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHH
Q 016027 113 NILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDG-LVE 191 (396)
Q Consensus 113 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~ 191 (396)
..+..++.+.|++++|+..|++.++... .+...+..+..++...|++++|+..|++.++.. +.+...+..+... ...
T Consensus 234 ~nla~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~ 311 (338)
T 2if4_A 234 LNIAACLIKLKRYDEAIGHCNIVLTEEE-KNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQE 311 (338)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHH
Confidence 5555566666666666666666555432 245555566666666666666666666555442 1223333333333 222
Q ss_pred cCCHHHHHHHHHHHHhc
Q 016027 192 AGRFEEVSGMMERFLVC 208 (396)
Q Consensus 192 ~~~~~~a~~~~~~~~~~ 208 (396)
.+..+.+...|..+...
T Consensus 312 ~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 312 KALYQKQKEMYKGIFKG 328 (338)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHHHHhhCC
Confidence 34455555566655543
No 192
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.60 E-value=1e-07 Score=83.71 Aligned_cols=134 Identities=10% Similarity=-0.035 Sum_probs=93.7
Q ss_pred hhhhccCchhHHHHHHHHhCCCC---CCCC-CChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccc---cCCCCchhHHH
Q 016027 4 VLAKAKEFDSAWCLLLDKIGGHE---VPDF-VSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMV---KNFDSGASLFE 76 (396)
Q Consensus 4 ~~~~~g~~~~A~~~~~~~~~~~~---~p~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~ 76 (396)
.+..+|++++|+.+++++++... .|+. ....+++.|+.+|..+|++++|..+++++...... ++.|....+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 35678999999998888774321 2221 13468889999999999999999999988764221 13344566688
Q ss_pred HHHHHHHHcCChHHHHHHHHHHhhc-----cCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 016027 77 ILLDSLCKQGRVKAASEYFHKRKEL-----DQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRK 137 (396)
Q Consensus 77 ~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 137 (396)
.|+..|..+|++++|..+++++... ++..+....+.+.+..++...+.+++|+.+|..+.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999888886643 223222344455666667777777778777777754
No 193
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.58 E-value=6.1e-07 Score=66.43 Aligned_cols=135 Identities=13% Similarity=0.105 Sum_probs=77.8
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCC---ChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-CC----
Q 016027 72 ASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAP---TVRVYNILLNGWFRSKNVKDAERFWLEMRKENVT-PN---- 143 (396)
Q Consensus 72 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~---- 143 (396)
..++..++..+...|++++|...++++....+.... ...++..+...+...|++++|...+++....... ++
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 456777888888888888888888887665221110 1135666777777778888888777776542100 01
Q ss_pred hhHHHHHHHHHHccCCHHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 016027 144 VVTYGTLVEGYCRLRRVDRAIRLVKEMRKE----GIE-PNAIVYNTVIDGLVEAGRFEEVSGMMERFL 206 (396)
Q Consensus 144 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 206 (396)
...+..+...+...|++++|...+++..+. +.+ .....+..+...+...|++++|...+++..
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 334555566666666666666666655432 100 012234444455555555555555555544
No 194
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.56 E-value=1.6e-07 Score=67.78 Aligned_cols=89 Identities=12% Similarity=0.058 Sum_probs=75.5
Q ss_pred hhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCH----------HHHHHHHHHHhhcccccCCCCchhHH
Q 016027 6 AKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMV----------EAAIWTFEFANNLDMVKNFDSGASLF 75 (396)
Q Consensus 6 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~~~~~~~~~~~ 75 (396)
.+.+++++|+..++.+++. .|+ +..+|..++.++...|++ ++|+..|+++++.+ |.+..+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l--~P~--~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-----P~~~~A~ 83 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKS--NPL--DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-----PKKDEAV 83 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHH--CTT--CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-----TTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHHH--CCC--CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-----cCcHHHH
Confidence 4667899999999999985 565 478999999999999876 49999999999986 8889999
Q ss_pred HHHHHHHHHcC-----------ChHHHHHHHHHHhhccC
Q 016027 76 EILLDSLCKQG-----------RVKAASEYFHKRKELDQ 103 (396)
Q Consensus 76 ~~l~~~~~~~~-----------~~~~A~~~~~~~~~~~~ 103 (396)
..++.+|...| ++++|++.|+++.+.+|
T Consensus 84 ~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P 122 (158)
T 1zu2_A 84 WCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQP 122 (158)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCC
Confidence 99999998875 78888888888887754
No 195
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.56 E-value=1.3e-06 Score=74.47 Aligned_cols=100 Identities=12% Similarity=0.066 Sum_probs=53.4
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHhhccCC------------C-CCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 016027 73 SLFEILLDSLCKQGRVKAASEYFHKRKELDQS------------W-APTVRVYNILLNGWFRSKNVKDAERFWLEMRKEN 139 (396)
Q Consensus 73 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------------~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 139 (396)
..+..++..+.+.|++++|++.|+++....+. . +.+...|..+..++.+.|++++|+..+++.++..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 34677888888888999998888888762110 0 0123344444444455555555555555444432
Q ss_pred CCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 016027 140 VTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKE 173 (396)
Q Consensus 140 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 173 (396)
.. +...+..+..++...|++++|+..|++..+.
T Consensus 304 p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 304 PS-NTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 11 3444444444444444444444444444443
No 196
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.56 E-value=6.2e-07 Score=62.26 Aligned_cols=82 Identities=17% Similarity=0.079 Sum_probs=69.9
Q ss_pred hhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHH
Q 016027 12 DSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAA 91 (396)
Q Consensus 12 ~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 91 (396)
++|+..|.++++. .|+ +..++..++.++...|++++|+..|+++.... |.+..++..++.++...|++++|
T Consensus 2 ~~a~~~~~~al~~--~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~la~~~~~~g~~~~A 72 (115)
T 2kat_A 2 QAITERLEAMLAQ--GTD--NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-----PTYSVAWKWLGKTLQGQGDRAGA 72 (115)
T ss_dssp CCHHHHHHHHHTT--TCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred hHHHHHHHHHHHh--CCC--cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-----CCcHHHHHHHHHHHHHcCCHHHH
Confidence 4678888888875 444 46789999999999999999999999999875 77788899999999999999999
Q ss_pred HHHHHHHhhcc
Q 016027 92 SEYFHKRKELD 102 (396)
Q Consensus 92 ~~~~~~~~~~~ 102 (396)
...|+++....
T Consensus 73 ~~~~~~al~~~ 83 (115)
T 2kat_A 73 RQAWESGLAAA 83 (115)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 99999987763
No 197
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.56 E-value=3.9e-06 Score=75.57 Aligned_cols=177 Identities=12% Similarity=0.003 Sum_probs=145.7
Q ss_pred hccCc-hhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCC----------HHHHHHHHHHHhhcccccCCCCchhHH
Q 016027 7 KAKEF-DSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGM----------VEAAIWTFEFANNLDMVKNFDSGASLF 75 (396)
Q Consensus 7 ~~g~~-~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~~~ 75 (396)
+.|++ ++|++.+.+++.. .|+ ...+|+.-..++...|+ ++++++.++++.+.. |.+..+|
T Consensus 40 ~~~~~~eeal~~~~~~l~~--nP~--~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-----pK~y~aW 110 (567)
T 1dce_A 40 QAGELDESVLELTSQILGA--NPD--FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-----PKSYGTW 110 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHH--CTT--CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-----TTCHHHH
T ss_pred HcCCCCHHHHHHHHHHHHH--Cch--hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-----CCCHHHH
Confidence 34444 5679999999984 566 36789988888888888 999999999999986 8899999
Q ss_pred HHHHHHHHHcC--ChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCChhHHHHHHH
Q 016027 76 EILLDSLCKQG--RVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSK-NVKDAERFWLEMRKENVTPNVVTYGTLVE 152 (396)
Q Consensus 76 ~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 152 (396)
+.-..++.+.+ +++++++.++++.+.++. +..+|+.-...+.+.| .++++++.++++++..+. +..+|+....
T Consensus 111 ~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~---N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ 186 (567)
T 1dce_A 111 HHRCWLLSRLPEPNWARELELCARFLEADER---NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSC 186 (567)
T ss_dssp HHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHH
T ss_pred HHHHHHHHHcccccHHHHHHHHHHHHhhccc---cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHH
Confidence 99999999999 779999999999998765 8899998888888888 899999999999988655 8888888777
Q ss_pred HHHcc--------------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 016027 153 GYCRL--------------RRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEE 197 (396)
Q Consensus 153 ~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 197 (396)
.+.+. +.++++++.++..+... +-+...|.-+-..+.+.+..++
T Consensus 187 ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 187 LLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred HHHhhcccccccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 76653 56789999999998874 5567777777777777666443
No 198
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.53 E-value=1e-07 Score=65.70 Aligned_cols=97 Identities=9% Similarity=-0.068 Sum_probs=76.0
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCC---h
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPT---V 109 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~ 109 (396)
..+|..++..+...|++++|+..|+++.... |.++.++..++.++...|++++|++.++++...+|..... .
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 78 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-----PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRS 78 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHH
Confidence 5678899999999999999999999999875 7788899999999999999999999999998875441000 4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHH
Q 016027 110 RVYNILLNGWFRSKNVKDAERFWLE 134 (396)
Q Consensus 110 ~~~~~l~~~~~~~~~~~~a~~~~~~ 134 (396)
..+..+..++...|+++.|...+++
T Consensus 79 ~~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 79 KLQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHHHHHhHhhhHhHHHH
Confidence 5566666777777776666555443
No 199
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.50 E-value=4.9e-07 Score=65.30 Aligned_cols=100 Identities=16% Similarity=0.108 Sum_probs=80.5
Q ss_pred HHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCCh----------HHHHHHHHHHhhccCCCCCChHHH
Q 016027 43 YARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRV----------KAASEYFHKRKELDQSWAPTVRVY 112 (396)
Q Consensus 43 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~A~~~~~~~~~~~~~~~~~~~~~ 112 (396)
..+.+.+++|++.++++.+.. |.++..|..++.++...+++ ++|+..|+++.+.+|. +..+|
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l~-----P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~---~~~A~ 83 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSN-----PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK---KDEAV 83 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT---CHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC---cHHHH
Confidence 356788999999999999986 88999999999999998875 5999999999998766 77889
Q ss_pred HHHHHHHHhcC-----------ChhHHHHHHHHHHhCCCCCChhHHHHHHH
Q 016027 113 NILLNGWFRSK-----------NVKDAERFWLEMRKENVTPNVVTYGTLVE 152 (396)
Q Consensus 113 ~~l~~~~~~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 152 (396)
..+..+|...| ++++|++.|++.++. .|+...|...+.
T Consensus 84 ~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~ 132 (158)
T 1zu2_A 84 WCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 99999998774 788888888887774 455555444433
No 200
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.48 E-value=2.9e-06 Score=55.76 Aligned_cols=82 Identities=27% Similarity=0.291 Sum_probs=63.5
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHH
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVY 112 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 112 (396)
..++..++..+...|++++|+..|+++.... |.+..++..++.++...|++++|.+.|+++...+|. +...+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~---~~~~~ 80 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-----PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN---NAEAK 80 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC---CHHHH
Confidence 4577888888888888888888888888764 667778888888888888888888888888876544 56666
Q ss_pred HHHHHHHHhc
Q 016027 113 NILLNGWFRS 122 (396)
Q Consensus 113 ~~l~~~~~~~ 122 (396)
..+..++...
T Consensus 81 ~~l~~~~~~~ 90 (91)
T 1na3_A 81 QNLGNAKQKQ 90 (91)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 6666665543
No 201
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.46 E-value=2.1e-06 Score=75.46 Aligned_cols=131 Identities=10% Similarity=-0.028 Sum_probs=84.9
Q ss_pred HHHHcCCHHHHHHHHHHHhhcccc---cCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhc-----cCCCCCChHHHH
Q 016027 42 RYARAGMVEAAIWTFEFANNLDMV---KNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKEL-----DQSWAPTVRVYN 113 (396)
Q Consensus 42 ~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~ 113 (396)
.+..+|++++|+.+++++...... +..|....+++.|+.+|...|++++|..+++++... ++..+....+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 455788888888888887764321 123344566788888888888888888888776543 222222355677
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHh-----CCCC-CC-hhHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 016027 114 ILLNGWFRSKNVKDAERFWLEMRK-----ENVT-PN-VVTYGTLVEGYCRLRRVDRAIRLVKEMRK 172 (396)
Q Consensus 114 ~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~-~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 172 (396)
.|...|...|++++|+.++++..+ .|.. |+ ..+.+.+..++...+.+++|..+|..+.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888776653 2322 11 22344555666666777777777776654
No 202
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.45 E-value=1.3e-06 Score=58.88 Aligned_cols=65 Identities=15% Similarity=0.042 Sum_probs=56.6
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhc
Q 016027 32 SKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKEL 101 (396)
Q Consensus 32 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 101 (396)
+..++..++.++...|++++|+..|+++.+.. |.++.+|..++.+|...|++++|.+.|+++...
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-----PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 46788899999999999999999999998875 777888999999999999999999999888765
No 203
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.43 E-value=5.1e-06 Score=59.66 Aligned_cols=113 Identities=15% Similarity=0.019 Sum_probs=69.9
Q ss_pred hccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHH--
Q 016027 7 KAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCK-- 84 (396)
Q Consensus 7 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 84 (396)
-.+++++|+..|.+..+.+ .|. +. ++..|...+..++|+++|+++.+. .++.....|...|..
T Consensus 7 ~~~d~~~A~~~~~~aa~~g-~~~-----a~--lg~~y~~g~~~~~A~~~~~~Aa~~-------g~~~a~~~Lg~~y~~G~ 71 (138)
T 1klx_A 7 VKKDLKKAIQYYVKACELN-EMF-----GC--LSLVSNSQINKQKLFQYLSKACEL-------NSGNGCRFLGDFYENGK 71 (138)
T ss_dssp HHHHHHHHHHHHHHHHHTT-CTT-----HH--HHHHTCTTSCHHHHHHHHHHHHHT-------TCHHHHHHHHHHHHHCS
T ss_pred CccCHHHHHHHHHHHHcCC-CHh-----hh--HHHHHHcCCCHHHHHHHHHHHHcC-------CCHHHHHHHHHHHHcCC
Confidence 3456667777776666543 222 33 666666666666677777766664 244556666666666
Q ss_pred --cCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHh----cCChhHHHHHHHHHHhCC
Q 016027 85 --QGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFR----SKNVKDAERFWLEMRKEN 139 (396)
Q Consensus 85 --~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 139 (396)
.+++++|.++|+++.+. + +...+..|...|.. .+++++|...|++..+.|
T Consensus 72 g~~~d~~~A~~~~~~Aa~~--g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 72 YVKKDLRKAAQYYSKACGL--N---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp SSCCCHHHHHHHHHHHHHT--T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred CCCccHHHHHHHHHHHHcC--C---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 56677777777766654 2 55566666666666 566666666666666654
No 204
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.37 E-value=2.3e-06 Score=59.35 Aligned_cols=80 Identities=13% Similarity=0.021 Sum_probs=67.5
Q ss_pred HHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHH
Q 016027 51 AAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAER 130 (396)
Q Consensus 51 ~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 130 (396)
+|+..|+++.+.. |.++.++..++..+...|++++|+..|+++...+|. +...|..+..++...|++++|..
T Consensus 3 ~a~~~~~~al~~~-----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~ 74 (115)
T 2kat_A 3 AITERLEAMLAQG-----TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT---YSVAWKWLGKTLQGQGDRAGARQ 74 (115)
T ss_dssp CHHHHHHHHHTTT-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHhC-----CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC---cHHHHHHHHHHHHHcCCHHHHHH
Confidence 5677888887764 778888999999999999999999999999887554 67788889999999999999999
Q ss_pred HHHHHHhC
Q 016027 131 FWLEMRKE 138 (396)
Q Consensus 131 ~~~~~~~~ 138 (396)
.|++..+.
T Consensus 75 ~~~~al~~ 82 (115)
T 2kat_A 75 AWESGLAA 82 (115)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99888764
No 205
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.37 E-value=1.3e-05 Score=57.56 Aligned_cols=111 Identities=15% Similarity=0.067 Sum_probs=70.9
Q ss_pred CCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHh----c
Q 016027 47 GMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFR----S 122 (396)
Q Consensus 47 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 122 (396)
+++++|+++|+++.+.+ .+. .. +...|...+.+++|.++|+++... + +...+..|...|.. .
T Consensus 9 ~d~~~A~~~~~~aa~~g-----~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g---~~~a~~~Lg~~y~~G~g~~ 74 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-----EMF--GC--LSLVSNSQINKQKLFQYLSKACEL--N---SGNGCRFLGDFYENGKYVK 74 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-----CTT--HH--HHHHTCTTSCHHHHHHHHHHHHHT--T---CHHHHHHHHHHHHHCSSSC
T ss_pred cCHHHHHHHHHHHHcCC-----CHh--hh--HHHHHHcCCCHHHHHHHHHHHHcC--C---CHHHHHHHHHHHHcCCCCC
Confidence 35667777777776653 222 22 666666666677777777776654 2 56666666666666 5
Q ss_pred CChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHc----cCCHHHHHHHHHHHHHcC
Q 016027 123 KNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCR----LRRVDRAIRLVKEMRKEG 174 (396)
Q Consensus 123 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 174 (396)
+++++|.+.|++..+.| +...+..|...|.. .+++++|..+|++..+.|
T Consensus 75 ~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 75 KDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 67777777777766654 45566666666666 566677777776666665
No 206
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.26 E-value=1.4e-05 Score=52.34 Aligned_cols=83 Identities=20% Similarity=0.292 Sum_probs=59.5
Q ss_pred CchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHH
Q 016027 70 SGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGT 149 (396)
Q Consensus 70 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 149 (396)
.+...+..++..+...|++++|...|+++...+|. +...+..+..++...|++++|...|++..+..+. +...+..
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~ 82 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN---NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAKQN 82 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CHHHHHH
Confidence 34567777888888888888888888888776443 5677778888888888888888888887765322 4555655
Q ss_pred HHHHHHc
Q 016027 150 LVEGYCR 156 (396)
Q Consensus 150 l~~~~~~ 156 (396)
+..++..
T Consensus 83 l~~~~~~ 89 (91)
T 1na3_A 83 LGNAKQK 89 (91)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 5555543
No 207
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.25 E-value=1.7e-06 Score=59.40 Aligned_cols=95 Identities=9% Similarity=-0.043 Sum_probs=62.7
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-------HH
Q 016027 283 DRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPH-------YL 355 (396)
Q Consensus 283 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-------~~ 355 (396)
+...+..+...+...|++++|...++++.+..+. +...+..+..++...|++++|++.+++.++.. |+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHHHHHH
Confidence 3445666667777777777777777777766433 56677777777777777777777777777643 33 44
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHH
Q 016027 356 TFKRLNDEFKKRGMTALAQKLCNVM 380 (396)
Q Consensus 356 ~~~~l~~~~~~~g~~~~A~~~~~~~ 380 (396)
.+..+..++...|+.+.|...++++
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHHHhHhhhHhHHHHh
Confidence 5556666666667666665555443
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.21 E-value=8e-06 Score=54.87 Aligned_cols=67 Identities=18% Similarity=0.057 Sum_probs=58.2
Q ss_pred CCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 016027 69 DSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKE 138 (396)
Q Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 138 (396)
|.++.++..++..|...|++++|+..|+++.+.+|. +...|..+..++...|++++|...|++..+.
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPD---YVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 677888999999999999999999999999988665 6678999999999999999999999987753
No 209
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.05 E-value=0.00011 Score=48.20 Aligned_cols=73 Identities=7% Similarity=-0.016 Sum_probs=53.7
Q ss_pred hhHHHHHHHHHHHcCC---HHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCCh
Q 016027 33 KDTFVILIRRYARAGM---VEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTV 109 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 109 (396)
...+..++.++...++ .++|..+|+++.+.+ |.++.+...++..+.+.|++++|+..|+++...+|. .|+.
T Consensus 6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-----p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~~~ 79 (93)
T 3bee_A 6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-----PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-NLDR 79 (93)
T ss_dssp HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TCCH
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-----cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CccH
Confidence 5677777777765554 678888888888875 777777888888888888888888888888777655 5554
Q ss_pred HH
Q 016027 110 RV 111 (396)
Q Consensus 110 ~~ 111 (396)
..
T Consensus 80 ~~ 81 (93)
T 3bee_A 80 VT 81 (93)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 210
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.99 E-value=8.8e-06 Score=54.48 Aligned_cols=62 Identities=18% Similarity=0.233 Sum_probs=40.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchh-HHHHHHHHHHHcCChHHHHHHHHHHhhccCC
Q 016027 38 ILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGAS-LFEILLDSLCKQGRVKAASEYFHKRKELDQS 104 (396)
Q Consensus 38 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 104 (396)
..+..+...|++++|+..|+++.+.. |.+.. ++..++.++...|++++|.+.|+++...+|.
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 67 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTE-----PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPD 67 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-----SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-----CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 34556666677777777777666653 55555 6666666666777777777777766665443
No 211
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.98 E-value=3.8e-05 Score=66.52 Aligned_cols=97 Identities=8% Similarity=-0.023 Sum_probs=60.6
Q ss_pred hhhhccCchhHHHHHHHHhCCCC---CCCC-CChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccc---cCCCCchhHHH
Q 016027 4 VLAKAKEFDSAWCLLLDKIGGHE---VPDF-VSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMV---KNFDSGASLFE 76 (396)
Q Consensus 4 ~~~~~g~~~~A~~~~~~~~~~~~---~p~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~ 76 (396)
.+.++|++++|+.++++.++... .|+. ....++..++.+|..+|++++|+.+++++...... +..|.....++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 34566777777777777765322 2221 12346777777777777777777777777653211 12333445567
Q ss_pred HHHHHHHHcCChHHHHHHHHHHhh
Q 016027 77 ILLDSLCKQGRVKAASEYFHKRKE 100 (396)
Q Consensus 77 ~l~~~~~~~~~~~~A~~~~~~~~~ 100 (396)
.|+..|...|++++|+.+++++..
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Confidence 777777777777777777776554
No 212
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.92 E-value=0.00017 Score=48.07 Aligned_cols=55 Identities=20% Similarity=0.282 Sum_probs=29.1
Q ss_pred hhhhccCchhHHHHHHHHhCCCCCCCCCChh-HHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 016027 4 VLAKAKEFDSAWCLLLDKIGGHEVPDFVSKD-TFVILIRRYARAGMVEAAIWTFEFANNL 62 (396)
Q Consensus 4 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 62 (396)
.+.+.|++++|+..|+++++ .++.+.. ++..++.++...|++++|++.|+++.+.
T Consensus 9 ~~~~~~~~~~A~~~~~~al~----~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQ----TEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHH----HCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH----HCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 34455555555555555554 1233344 5555555555555555555555555554
No 213
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.89 E-value=0.0013 Score=54.80 Aligned_cols=67 Identities=7% Similarity=-0.072 Sum_probs=44.5
Q ss_pred CCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 016027 141 TPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCE 209 (396)
Q Consensus 141 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 209 (396)
+.+..++..+...+...|++++|...+++++..+ |+...|..+...+.-.|++++|...|+++...+
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR 340 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 3456666666665666677777777777777664 566666666666777777777777777776643
No 214
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.83 E-value=0.00026 Score=58.88 Aligned_cols=154 Identities=13% Similarity=0.085 Sum_probs=100.5
Q ss_pred CCchhHHHHHHHHHHH--cC---ChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 016027 69 DSGASLFEILLDSLCK--QG---RVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPN 143 (396)
Q Consensus 69 ~~~~~~~~~l~~~~~~--~~---~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 143 (396)
|.+..+|...+++... .+ +..+|..+|+++.+.+|+ ....|..+..++. .. ...+.. +
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~---~a~A~A~la~a~~----------~~---~~~~~~-~ 253 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPE---FTYARAEKALVDI----------VR---HSQHPL-D 253 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHH----------HH---HHHSCC-C
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHH----------HH---hccCCC-c
Confidence 6677777777665443 22 357788888888888665 4556665555554 00 111101 1
Q ss_pred hhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHH
Q 016027 144 VVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKG 223 (396)
Q Consensus 144 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 223 (396)
...... ...+.+.... ... .+.++.++..+...+...|++++|...++++...+ |+...|..+...
T Consensus 254 ~~~~~~----------l~~a~~a~~a-~~~-~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~ 319 (372)
T 3ly7_A 254 EKQLAA----------LNTEIDNIVT-LPE-LNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKV 319 (372)
T ss_dssp HHHHHH----------HHHHHHHHHT-CGG-GTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHH
T ss_pred hhhHHH----------HHHHHHHHHh-ccc-CCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHH
Confidence 111111 1122221111 112 26678888888877777899999999999999975 677788888899
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCChhhHHHH
Q 016027 224 YCKAGDLEGASKILKMMISRGFLPSPTTYNYF 255 (396)
Q Consensus 224 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 255 (396)
+.-.|++++|.+.+++.... .|...+|...
T Consensus 320 ~~~~G~~~eA~e~~~~AlrL--~P~~~t~~~~ 349 (372)
T 3ly7_A 320 YEMKGMNREAADAYLTAFNL--RPGANTLYWI 349 (372)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--SCSHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHhc--CCCcChHHHH
Confidence 99999999999999999986 4666666544
No 215
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.80 E-value=3.6e-05 Score=66.52 Aligned_cols=93 Identities=10% Similarity=-0.228 Sum_probs=51.9
Q ss_pred ccCchhHHHHHHHHhCCC---CCCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccc---cCCCCchhHHHHHHH
Q 016027 8 AKEFDSAWCLLLDKIGGH---EVPDFV-SKDTFVILIRRYARAGMVEAAIWTFEFANNLDMV---KNFDSGASLFEILLD 80 (396)
Q Consensus 8 ~g~~~~A~~~~~~~~~~~---~~p~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~~l~~ 80 (396)
.|++++|+.++++.++.. ..|+.+ ...+++.++.+|..+|++++|+.+++++...... +..|.....++.|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 456666766666655321 122211 2345666677777777777777776666653211 122333445666666
Q ss_pred HHHHcCChHHHHHHHHHHhh
Q 016027 81 SLCKQGRVKAASEYFHKRKE 100 (396)
Q Consensus 81 ~~~~~~~~~~A~~~~~~~~~ 100 (396)
.|..+|++++|+.+++++..
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 66666666666666666544
No 216
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.78 E-value=8.4e-05 Score=64.27 Aligned_cols=91 Identities=8% Similarity=-0.123 Sum_probs=55.4
Q ss_pred cCCHHHHHHHHHHHhhcccc---cCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhc-----cCCCCCChHHHHHHHH
Q 016027 46 AGMVEAAIWTFEFANNLDMV---KNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKEL-----DQSWAPTVRVYNILLN 117 (396)
Q Consensus 46 ~g~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~ 117 (396)
.|++++|+.+++++...... +..|....+++.|+.+|...|++++|+.+++++... ++..+....+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 46677777777776653211 122333455677777777777777777777765533 2222223445667777
Q ss_pred HHHhcCChhHHHHHHHHHH
Q 016027 118 GWFRSKNVKDAERFWLEMR 136 (396)
Q Consensus 118 ~~~~~~~~~~a~~~~~~~~ 136 (396)
.|...|++++|+.+|++..
T Consensus 391 ~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHH
Confidence 7777777777777776654
No 217
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.73 E-value=0.00024 Score=61.50 Aligned_cols=97 Identities=9% Similarity=-0.129 Sum_probs=57.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhcccc---cCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhc-----cCCCCCChHH
Q 016027 40 IRRYARAGMVEAAIWTFEFANNLDMV---KNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKEL-----DQSWAPTVRV 111 (396)
Q Consensus 40 ~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~ 111 (396)
+..+.++|++++|+.+++++...... +..|....+++.++.+|...|++++|+.+++++... ++..+....+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 44455667777777777777653211 122333455667777777777777777777765433 1222223445
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH
Q 016027 112 YNILLNGWFRSKNVKDAERFWLEMR 136 (396)
Q Consensus 112 ~~~l~~~~~~~~~~~~a~~~~~~~~ 136 (396)
++.|...|...|++++|+.++++..
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 6667777777777777777666654
No 218
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.72 E-value=0.00041 Score=45.44 Aligned_cols=68 Identities=15% Similarity=0.188 Sum_probs=58.0
Q ss_pred CCchhHHHHHHHHHHHcCC---hHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 016027 69 DSGASLFEILLDSLCKQGR---VKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKEN 139 (396)
Q Consensus 69 ~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 139 (396)
|.++.++..++.++...++ .++|..+++++...+|. +......+...+.+.|++++|+..|+++.+..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~---~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY---NEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 7788888888888876655 68999999999988766 78888888899999999999999999998864
No 219
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.68 E-value=0.00061 Score=45.85 Aligned_cols=73 Identities=16% Similarity=-0.012 Sum_probs=58.4
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHhhccccc--CCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCC
Q 016027 32 SKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVK--NFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQS 104 (396)
Q Consensus 32 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 104 (396)
|..-+..++..+.+.|+++.|+..|+.+.+..... ...+...++..++.++.+.|+++.|...++++...+|.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~ 78 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE 78 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Confidence 35678899999999999999999999988753211 12356778889999999999999999999999887554
No 220
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.64 E-value=0.00044 Score=49.37 Aligned_cols=92 Identities=11% Similarity=-0.039 Sum_probs=70.1
Q ss_pred hhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcC---CHHHHHHHHHHHhhcccccCCC-CchhHHHHHHH
Q 016027 5 LAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAG---MVEAAIWTFEFANNLDMVKNFD-SGASLFEILLD 80 (396)
Q Consensus 5 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~~l~~ 80 (396)
......+..+.+.|.+.++.+. + +.++...++-++++.+ +.++++.+|+.+.+.. .| .....+..+.-
T Consensus 8 ~l~~~~l~~~~~~y~~e~~~~~-~---~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~----~p~~~rd~lY~LAv 79 (152)
T 1pc2_A 8 LVSVEDLLKFEKKFQSEKAAGS-V---SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG----SKEEQRDYVFYLAV 79 (152)
T ss_dssp SCCHHHHHHHHHHHHHHHHTTC-C---CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS----CHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHccCC-C---cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC----CccchHHHHHHHHH
Confidence 3445566777777777776432 3 3788889999999988 6669999999888863 12 35677888889
Q ss_pred HHHHcCChHHHHHHHHHHhhccCC
Q 016027 81 SLCKQGRVKAASEYFHKRKELDQS 104 (396)
Q Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~~~ 104 (396)
++.+.|++++|.++++.+.+.+|+
T Consensus 80 ~~~kl~~Y~~A~~y~~~lL~ieP~ 103 (152)
T 1pc2_A 80 GNYRLKEYEKALKYVRGLLQTEPQ 103 (152)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHCTT
T ss_pred HHHHccCHHHHHHHHHHHHhcCCC
Confidence 999999999999999999887554
No 221
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.47 E-value=0.017 Score=46.19 Aligned_cols=51 Identities=12% Similarity=0.159 Sum_probs=22.8
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhc-CChHHHHHHHHHHHHC
Q 016027 193 GRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKA-GDLEGASKILKMMISR 243 (396)
Q Consensus 193 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~ 243 (396)
|+.++|.+.|++.++.++.-+..++......++.. |+.+.+.+.+++....
T Consensus 218 Gd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a 269 (301)
T 3u64_A 218 GGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAI 269 (301)
T ss_dssp CCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Confidence 44444444444444433322234444444444442 4444444444444443
No 222
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.45 E-value=0.00056 Score=54.47 Aligned_cols=96 Identities=19% Similarity=0.228 Sum_probs=50.5
Q ss_pred chhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHc-----CCHHHHHHHHHHHhhcccccCCCC-chhHHHHHHHHHHH
Q 016027 11 FDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARA-----GMVEAAIWTFEFANNLDMVKNFDS-GASLFEILLDSLCK 84 (396)
Q Consensus 11 ~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 84 (396)
...|..+++++++. .|+..+..+|..++..|... |+.++|.+.|++++... |. +..++...+..++.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~Ln-----P~~~id~~v~YA~~l~~ 251 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYC-----SAHDPDHHITYADALCI 251 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHC-----CTTCSHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhC-----CCCCchHHHHHHHHHHH
Confidence 34555555555552 34322344556666666553 66666666666666653 32 25555555555555
Q ss_pred c-CChHHHHHHHHHHhhccCCCCCChHHHH
Q 016027 85 Q-GRVKAASEYFHKRKELDQSWAPTVRVYN 113 (396)
Q Consensus 85 ~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 113 (396)
. |+.+++.+.++++...++...|+....+
T Consensus 252 ~~gd~~~a~~~L~kAL~a~p~~~P~~~lan 281 (301)
T 3u64_A 252 PLNNRAGFDEALDRALAIDPESVPHNKLLV 281 (301)
T ss_dssp TTTCHHHHHHHHHHHHHCCGGGCSSCHHHH
T ss_pred hcCCHHHHHHHHHHHHcCCCCCCCChhHHH
Confidence 3 5666666666666555443334443333
No 223
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.27 E-value=0.031 Score=53.03 Aligned_cols=151 Identities=9% Similarity=0.090 Sum_probs=82.2
Q ss_pred HHHhcCChhHHHH-HHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 016027 118 GWFRSKNVKDAER-FWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFE 196 (396)
Q Consensus 118 ~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 196 (396)
.....+++++|.+ ++.. + ++......++..+.+.|.++.|+++.+. .. .-.......|+++
T Consensus 608 ~~~~~~~~~~a~~~~l~~-----i-~~~~~~~~~~~~l~~~~~~~~a~~~~~~---------~~---~~f~~~l~~~~~~ 669 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPN-----V-EGKDSLTKIARFLEGQEYYEEALNISPD---------QD---QKFELALKVGQLT 669 (814)
T ss_dssp HHHHTTCHHHHHHHTGGG-----C-CCHHHHHHHHHHHHHTTCHHHHHHHCCC---------HH---HHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHhc-----C-CchHHHHHHHHHHHhCCChHHheecCCC---------cc---hheehhhhcCCHH
Confidence 3345677777765 4311 1 1122336666677777777777765421 11 1123345677888
Q ss_pred HHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHH
Q 016027 197 EVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMI 276 (396)
Q Consensus 197 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 276 (396)
.|.++.+.+ .+...|..+...+.+.++++.|...|..+.. |..+...+...++.+...++.+...
T Consensus 670 ~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~ 734 (814)
T 3mkq_A 670 LARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAE 734 (814)
T ss_dssp HHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHH
Confidence 887775442 3567788888888888888888877776542 3334444444566555544444443
Q ss_pred HCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 016027 277 ESGYTPDRLTYHILLKILCKEDKLDLAIQVS 307 (396)
Q Consensus 277 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 307 (396)
..| -++....+|.+.|++++|.+++
T Consensus 735 ~~~------~~~~A~~~~~~~g~~~~a~~~~ 759 (814)
T 3mkq_A 735 TTG------KFNLAFNAYWIAGDIQGAKDLL 759 (814)
T ss_dssp HTT------CHHHHHHHHHHHTCHHHHHHHH
T ss_pred HcC------chHHHHHHHHHcCCHHHHHHHH
Confidence 332 1122233344455555555443
No 224
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.23 E-value=0.0018 Score=46.30 Aligned_cols=81 Identities=12% Similarity=0.104 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCC--ChhhHHHHHHHHHhcCChhHHHH
Q 016027 266 EDAMNLYRKMIESGYTPDRLTYHILLKILCKED---KLDLAIQVSKEMKCRGCDI--DLDTSTMLIHLLCRMYKFDEASA 340 (396)
Q Consensus 266 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~ 340 (396)
..+.+-|.+..+.+. ++..+...+..++.+++ +.++++.+++.+.+.. .| +...+-.+.-++.+.|++++|.+
T Consensus 15 ~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence 344445554444443 45555555566666655 4446666666666543 12 23444455555666666666666
Q ss_pred HHHHHHHC
Q 016027 341 EFEDMIRR 348 (396)
Q Consensus 341 ~~~~~~~~ 348 (396)
.++.+++.
T Consensus 93 y~~~lL~i 100 (152)
T 1pc2_A 93 YVRGLLQT 100 (152)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 66666653
No 225
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.18 E-value=0.026 Score=39.78 Aligned_cols=111 Identities=11% Similarity=0.102 Sum_probs=79.1
Q ss_pred ChhHHHHHHHHHHHcCCH------HHHHHHHHHHhhcccccCCCCchh--------HHHHHHHHHHHcCChHHHHHHHHH
Q 016027 32 SKDTFVILIRRYARAGMV------EAAIWTFEFANNLDMVKNFDSGAS--------LFEILLDSLCKQGRVKAASEYFHK 97 (396)
Q Consensus 32 ~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~~~~~~~~~~~~~--------~~~~l~~~~~~~~~~~~A~~~~~~ 97 (396)
+.++|-..+...-+.|++ ++.+++|+++...- ||+.. +|...+ .+...++.++|.++|+.
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~-----Pp~k~~~wrrYI~LWIrYA-~~~ei~D~d~aR~vy~~ 85 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEAL-----PPDKYGQNESFARIQVRFA-ELKAIQEPDDARDYFQM 85 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHS-----CGGGGTTCHHHHHHHHHHH-HHHHHHCGGGCHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcC-----CccccccHHHHHHHHHHHH-HHHHhcCHHHHHHHHHH
Confidence 477999999999989999 89999999888853 44321 111111 11234789999999999
Q ss_pred HhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHH
Q 016027 98 RKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVE 152 (396)
Q Consensus 98 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 152 (396)
+......+ ...|...+..-.+.|++..|.+++...+..+..| ...+...++
T Consensus 86 a~~~hKkF---AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~-~~~le~a~~ 136 (161)
T 4h7y_A 86 ARANCKKF---AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP-LEMLEIALR 136 (161)
T ss_dssp HHHHCTTB---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC-HHHHHHHHH
T ss_pred HHHHhHHH---HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc-HHHHHHHHH
Confidence 87764343 7788888888888999999999999988877664 334444333
No 226
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.15 E-value=0.0043 Score=41.60 Aligned_cols=68 Identities=9% Similarity=-0.043 Sum_probs=50.2
Q ss_pred chhHHHHHHHHHHHcCChHHHHHHHHHHhhccCC----CCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 016027 71 GASLFEILLDSLCKQGRVKAASEYFHKRKELDQS----WAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKE 138 (396)
Q Consensus 71 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 138 (396)
++.-+..++..+...|++..|..+|+.+....+. ..+...++..+..++.+.|+++.|...++++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 4455677888888889999999988887765211 1234567778888888888888888888887765
No 227
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=97.13 E-value=0.018 Score=42.21 Aligned_cols=100 Identities=17% Similarity=0.138 Sum_probs=52.5
Q ss_pred hhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHH
Q 016027 5 LAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCK 84 (396)
Q Consensus 5 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 84 (396)
....|+++.|.++.+.. . + ...|..|+......|+++-|..+|.++.. +..+.-.|.-
T Consensus 15 AL~lg~l~~A~e~a~~l-~-----~---~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-------------~~~L~~Ly~~ 72 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL-N-----D---SITWERLIQEALAQGNASLAEMIYQTQHS-------------FDKLSFLYLV 72 (177)
T ss_dssp HHHTTCHHHHHHHHHHH-C-----C---HHHHHHHHHHHHHTTCHHHHHHHHHHTTC-------------HHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHh-C-----C---HHHHHHHHHHHHHcCChHHHHHHHHHhCC-------------HHHHHHHHHH
Confidence 34556666666654432 1 1 44566666666666666666666665544 3344555555
Q ss_pred cCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHH
Q 016027 85 QGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLE 134 (396)
Q Consensus 85 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 134 (396)
.|+.+.-.++-+.+... + -++....++...|+++++.++|.+
T Consensus 73 tg~~e~L~kla~iA~~~--g------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 73 TGDVNKLSKMQNIAQTR--E------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HTCHHHHHHHHHHHHHT--T------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHC--c------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 56655544444433332 1 134444445556666666666543
No 228
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.01 E-value=0.019 Score=54.52 Aligned_cols=155 Identities=10% Similarity=0.054 Sum_probs=97.5
Q ss_pred HHHHccCCHHHHHH-HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCh
Q 016027 152 EGYCRLRRVDRAIR-LVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDL 230 (396)
Q Consensus 152 ~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 230 (396)
......+++++|.+ ++.. + ++......++..+.+.|.++.|+++.+. +. .-.......|++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~-----i-~~~~~~~~~~~~l~~~~~~~~a~~~~~~-------~~-----~~f~~~l~~~~~ 668 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPN-----V-EGKDSLTKIARFLEGQEYYEEALNISPD-------QD-----QKFELALKVGQL 668 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGG-----C-CCHHHHHHHHHHHHHTTCHHHHHHHCCC-------HH-----HHHHHHHHHTCH
T ss_pred hHHHHhCCHHHHHHHHHhc-----C-CchHHHHHHHHHHHhCCChHHheecCCC-------cc-----hheehhhhcCCH
Confidence 34445677777766 4411 1 1122336777777888888888765532 11 112344567888
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 016027 231 EGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEM 310 (396)
Q Consensus 231 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 310 (396)
+.|.++.+.+ .+...|..+...+.+.++++.|.+.|.++.. |..+...+...|+.+...++.+..
T Consensus 669 ~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a 733 (814)
T 3mkq_A 669 TLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDA 733 (814)
T ss_dssp HHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHH
Confidence 8888775432 3667888888888888888888888887632 334455555677777766666555
Q ss_pred HHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 016027 311 KCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDM 345 (396)
Q Consensus 311 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 345 (396)
...| -++....+|.+.|++++|.+++.++
T Consensus 734 ~~~~------~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 734 ETTG------KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHcC------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 5443 2344455567778888888877655
No 229
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.97 E-value=0.038 Score=40.58 Aligned_cols=131 Identities=15% Similarity=0.090 Sum_probs=93.1
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHH
Q 016027 222 KGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLD 301 (396)
Q Consensus 222 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 301 (396)
....+.|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+... +..+.-.|...|+.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHH
Confidence 4456789999999997765 3788999999999999999999999987532 344555677788888
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHh
Q 016027 302 LAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFKKRGMTALAQKLCNVMS 381 (396)
Q Consensus 302 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 381 (396)
...++-+.....| -++.....+...|+++++.++|.+. |..|.. +......|-.+.|.++.+.+.
T Consensus 78 ~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~---~r~~eA------~~~A~t~g~~~~a~~~~~~~~ 142 (177)
T 3mkq_B 78 KLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG---GSLPLA------YAVAKANGDEAAASAFLEQAE 142 (177)
T ss_dssp HHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT---TCHHHH------HHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC---CChHHH------HHHHHHcCcHHHHHHHHHHhC
Confidence 7776666655443 2455566677789999999998544 322211 112234677888888888764
Q ss_pred c
Q 016027 382 S 382 (396)
Q Consensus 382 ~ 382 (396)
-
T Consensus 143 ~ 143 (177)
T 3mkq_B 143 V 143 (177)
T ss_dssp C
T ss_pred C
Confidence 3
No 230
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.83 E-value=0.017 Score=40.66 Aligned_cols=64 Identities=9% Similarity=0.006 Sum_probs=45.0
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 016027 296 KEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKRLN 361 (396)
Q Consensus 296 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 361 (396)
..++.++|.++|+.+++.+-.. ...|......-.+.|++..|.+++.+.+..+.+|. ..+...+
T Consensus 72 ei~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~-~~le~a~ 135 (161)
T 4h7y_A 72 AIQEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL-EMLEIAL 135 (161)
T ss_dssp HHHCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH-HHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH-HHHHHHH
Confidence 4478888888888887654444 67777777777888888888888888888765443 3343333
No 231
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.57 E-value=0.016 Score=39.82 Aligned_cols=84 Identities=14% Similarity=-0.001 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhH---HHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCchHHH
Q 016027 300 LDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDE---ASAEFEDMIRRGLVP--HYLTFKRLNDEFKKRGMTALAQ 374 (396)
Q Consensus 300 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~ 374 (396)
+..+.+-|.+....+. ++..+-..+.++++++.+... ++.+++++.+.+ .| .......+.-++.+.|++++|.
T Consensus 17 l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 3344444444444333 455555556666666555444 555555555432 12 2223334444566666666666
Q ss_pred HHHHHHhccch
Q 016027 375 KLCNVMSSVPR 385 (396)
Q Consensus 375 ~~~~~~~~~~~ 385 (396)
+.++.+.+..|
T Consensus 95 ~~~~~lL~~eP 105 (126)
T 1nzn_A 95 KYVRGLLQTEP 105 (126)
T ss_dssp HHHHHHHHHCT
T ss_pred HHHHHHHHhCC
Confidence 66666555443
No 232
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.34 E-value=0.74 Score=43.65 Aligned_cols=87 Identities=10% Similarity=0.056 Sum_probs=37.4
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhH--HHHHHHHhccCCHH
Q 016027 189 LVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTY--NYFFRYFSKFGKVE 266 (396)
Q Consensus 189 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~ 266 (396)
+.-.|+.+....++..+.+.. ..+..-+..+.-++...|+.+.+..+++.+.... .|....- .++.-+|+..|+..
T Consensus 500 ~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~ 577 (963)
T 4ady_A 500 MLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNS 577 (963)
T ss_dssp HTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHH
T ss_pred hcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHH
Confidence 334455555555555544321 1111112222223334556666666655555431 1111111 12333455566655
Q ss_pred HHHHHHHHHHH
Q 016027 267 DAMNLYRKMIE 277 (396)
Q Consensus 267 ~a~~~~~~~~~ 277 (396)
...+++..+..
T Consensus 578 aIq~LL~~~~~ 588 (963)
T 4ady_A 578 AVKRLLHVAVS 588 (963)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhcc
Confidence 55555555554
No 233
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=96.28 E-value=0.027 Score=40.56 Aligned_cols=60 Identities=13% Similarity=0.043 Sum_probs=42.8
Q ss_pred hhhhhccCchhHHHHHHHHhCCCC-CCCCCCh----hHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 016027 3 KVLAKAKEFDSAWCLLLDKIGGHE-VPDFVSK----DTFVILIRRYARAGMVEAAIWTFEFANNL 62 (396)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 62 (396)
..+...|.|+.|+-+..-++.... .|+..++ .++..++.++...|++.+|...|+++.+.
T Consensus 28 k~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 28 RDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 456678899999888776554321 2332122 36778899999999999999999997664
No 234
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.22 E-value=0.043 Score=37.64 Aligned_cols=68 Identities=12% Similarity=-0.032 Sum_probs=41.0
Q ss_pred hhHHHHHHHHHHHcCCHHH---HHHHHHHHhhcccccCCC-CchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCC
Q 016027 33 KDTFVILIRRYARAGMVEA---AIWTFEFANNLDMVKNFD-SGASLFEILLDSLCKQGRVKAASEYFHKRKELDQS 104 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 104 (396)
..+-..++-++.+..+... ++.+++.+.+.+ .| ........|+-++.+.|++++|.+.++.+.+.+|+
T Consensus 35 ~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~----~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~ 106 (126)
T 1nzn_A 35 KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG----SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQ 106 (126)
T ss_dssp HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC----CcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC
Confidence 5566666666666665555 666666665542 01 23445556666666777777777777766665443
No 235
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.13 E-value=2.5e-05 Score=66.39 Aligned_cols=78 Identities=9% Similarity=0.135 Sum_probs=34.3
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 016027 213 TMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLK 292 (396)
Q Consensus 213 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 292 (396)
++.+|..+-.+|...+++.-|.-.--.++-. +.-...++..|...|.+++.+.+++...... ......|+.|.-
T Consensus 198 s~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaI 271 (624)
T 3lvg_A 198 STRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAI 271 (624)
T ss_dssp SSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHH
T ss_pred ChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHH
Confidence 4445555555555555555444333333211 1112223444455555555555554443221 224444554444
Q ss_pred HHHh
Q 016027 293 ILCK 296 (396)
Q Consensus 293 ~~~~ 296 (396)
.|++
T Consensus 272 LYsK 275 (624)
T 3lvg_A 272 LYSK 275 (624)
T ss_dssp HHHS
T ss_pred HHHh
Confidence 4444
No 236
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=96.07 E-value=0.071 Score=38.43 Aligned_cols=66 Identities=15% Similarity=0.096 Sum_probs=51.4
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCc-------hhHHHHHHHHHHHcCChHHHHHHHHHHhhc
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSG-------ASLFEILLDSLCKQGRVKAASEYFHKRKEL 101 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 101 (396)
..++..-++.+...|.++.|+-+.+.+...... +++ ..++..++.++...+++.+|...|+++.+.
T Consensus 20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~---~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNN---NPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---STTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcC---CcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 456778889999999999999999987765311 222 236778889999999999999999997554
No 237
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=96.00 E-value=0.83 Score=45.18 Aligned_cols=215 Identities=12% Similarity=0.108 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHH
Q 016027 35 TFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNI 114 (396)
Q Consensus 35 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 114 (396)
....++..+...|..+-+.++.... +.++..-..++.++...|++++|.+.|.++... +..+....
T Consensus 814 ~~~~l~~~l~~~~~~~~~~~l~~~~---------~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~---~~~~~~l~-- 879 (1139)
T 4fhn_B 814 LVTELVEKLFLFKQYNACMQLIGWL---------NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLV---LYSHTSQF-- 879 (1139)
T ss_dssp HHHHHHHHHHHHSCTTHHHHHHHHS---------CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCS---CTTCCCSC--
T ss_pred hHHHHHHHHHHhhhHHHHHHHhhhc---------cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhh---hcccchhh--
Confidence 4445777788888888777765543 344555577888999999999999999886431 11110000
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCC--CCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHH
Q 016027 115 LLNGWFRSKNVKDAERFWLEMRKEN--VTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNA----IVYNTVIDG 188 (396)
Q Consensus 115 l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~ 188 (396)
..... +..+.... ...-..-|..++..+-+.+.++.+.++-...++...+.+. ..|..+.+.
T Consensus 880 --------~~~~~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~ 947 (1139)
T 4fhn_B 880 --------AVLRE----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKT 947 (1139)
T ss_dssp --------SSHHH----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHH
T ss_pred --------hhhcc----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHH
Confidence 00000 01111110 1112234455555555566666665555555443211111 134555566
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcC------------ChHHHHHHHHHHHHC--CCCCChhhHHH
Q 016027 189 LVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAG------------DLEGASKILKMMISR--GFLPSPTTYNY 254 (396)
Q Consensus 189 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------------~~~~a~~~~~~~~~~--~~~~~~~~~~~ 254 (396)
+...|++++|...+-.+..... -......++...+..| ..++..+++..-.+. .+...+.-|..
T Consensus 948 ~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~i 1025 (1139)
T 4fhn_B 948 ACAAGKFDAAHVALMVLSTTPL--KKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNI 1025 (1139)
T ss_dssp HHHHCCSGGGGHHHHHHHHSSS--CHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHH
T ss_pred HHhhCCHHHHHHHHHhCCCHHH--HHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHH
Confidence 6666666666666655544222 2233444444444333 334444444332221 11112223444
Q ss_pred HHHHHhccCCHHH-HHHHHHHHHH
Q 016027 255 FFRYFSKFGKVED-AMNLYRKMIE 277 (396)
Q Consensus 255 l~~~~~~~~~~~~-a~~~~~~~~~ 277 (396)
|-..+...|++-. |.-+|+.+.+
T Consensus 1026 LYs~ri~r~dyR~AA~vmYe~~~R 1049 (1139)
T 4fhn_B 1026 LFSWRYKHQNYRDAAAIIYEKLSR 1049 (1139)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred hHhhhhccCChHHHHHHHHHHHHH
Confidence 4444455566554 4445555543
No 238
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=95.72 E-value=0.34 Score=47.88 Aligned_cols=148 Identities=9% Similarity=0.056 Sum_probs=87.2
Q ss_pred hhhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccC---------------
Q 016027 3 KVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKN--------------- 67 (396)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------- 67 (396)
..+.+.|+++-|..+ ....+. + +..-+.++.++...|++++|.++|.++...-....
T Consensus 820 ~~l~~~~~~~~~~~l-~~~~~~----~---~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 820 EKLFLFKQYNACMQL-IGWLNS----D---PIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHSCTTHHHHH-HHHSCC----C---HHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHhhhHHHHHHH-hhhccC----C---cHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 345667777777654 334432 2 33457889999999999999999998754211000
Q ss_pred ---CCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCC--hHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 016027 68 ---FDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPT--VRVYNILLNGWFRSKNVKDAERFWLEMRKENVTP 142 (396)
Q Consensus 68 ---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 142 (396)
...-+.-|..++..+.+.+.++.+.+.-..+.+......++ ...|..+...+...|++++|...+-.+.....
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~-- 969 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL-- 969 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--
Confidence 01112345666677777777777776666665542221221 12466667777777777777777766654422
Q ss_pred ChhHHHHHHHHHHccCCH
Q 016027 143 NVVTYGTLVEGYCRLRRV 160 (396)
Q Consensus 143 ~~~~~~~l~~~~~~~~~~ 160 (396)
-...+..++...+..|..
T Consensus 970 r~~cLr~LV~~lce~~~~ 987 (1139)
T 4fhn_B 970 KKSCLLDFVNQLTKQGKI 987 (1139)
T ss_dssp CHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHhCCCh
Confidence 234555555555555543
No 239
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.70 E-value=0.94 Score=39.35 Aligned_cols=264 Identities=11% Similarity=0.068 Sum_probs=146.9
Q ss_pred cCCHHHHHHHHHHHhhccc-ccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHH--HHHHHHHHHhc
Q 016027 46 AGMVEAAIWTFEFANNLDM-VKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRV--YNILLNGWFRS 122 (396)
Q Consensus 46 ~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~ 122 (396)
.|+++.|++.+-.+.+... ..+.+....+...++..|...|+++...+.+..+.+.. +..+...+ .+.++......
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr-~qlk~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKH-GQLKLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTT-TTSHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHhcC
Confidence 3778888888766665432 22456667788889999999999999888887766542 32222211 12222333333
Q ss_pred CChhH--HHHHHHHHHh--CC-CCC---ChhHHHHHHHHHHccCCHHHHHHHHHHHHHc--CCCCC---HHHHHHHHHHH
Q 016027 123 KNVKD--AERFWLEMRK--EN-VTP---NVVTYGTLVEGYCRLRRVDRAIRLVKEMRKE--GIEPN---AIVYNTVIDGL 189 (396)
Q Consensus 123 ~~~~~--a~~~~~~~~~--~~-~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~ 189 (396)
...+. -..+.+.+.. .| +-. .......|...+...|++.+|.+++..+... |.... ...+...++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 33332 1222221111 11 111 1233456788889999999999999998653 21111 34566677889
Q ss_pred HHcCCHHHHHHHHHHHHh----cCCCCc--hhhHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCChhhHHHH----HHH
Q 016027 190 VEAGRFEEVSGMMERFLV----CEPGPT--MVTYTSLVKGYCKAGDLEGASKILKMMISR-GFLPSPTTYNYF----FRY 258 (396)
Q Consensus 190 ~~~~~~~~a~~~~~~~~~----~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l----~~~ 258 (396)
...+++..|..++.++.. ....|+ ...+...+..+...+++.+|...|.++... ....+...+..+ +.+
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~ 267 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYF 267 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHH
Confidence 999999999998888643 222222 345667777888889999988888777542 111122222211 111
Q ss_pred HhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc--CCHHHHHHHHHHH
Q 016027 259 FSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKE--DKLDLAIQVSKEM 310 (396)
Q Consensus 259 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~ 310 (396)
..-.+....-..+..........++...+..++.+|... .+++.....|...
T Consensus 268 ~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~ 321 (445)
T 4b4t_P 268 LVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPV 321 (445)
T ss_dssp HHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSS
T ss_pred HHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHH
Confidence 111111111122222222222234566777788777653 3455555555443
No 240
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=95.59 E-value=0.037 Score=43.53 Aligned_cols=118 Identities=16% Similarity=0.137 Sum_probs=81.0
Q ss_pred HHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHH
Q 016027 41 RRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWF 120 (396)
Q Consensus 41 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 120 (396)
..+.+.|++++|++....-.+.. |.|...-..++..+|-.|++++|.+-++...+.+|...|....|..+|.+-.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-----P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE~ 79 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-----PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQ 79 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-----CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHH
Confidence 45678899999999888887764 8899999999999999999999999999998887776666666766665422
Q ss_pred hcCChhHHHHHHHHHHhCCCC-----CChhHHHHHHHHHH--ccCCHHHHHHHHHHHHHc
Q 016027 121 RSKNVKDAERFWLEMRKENVT-----PNVVTYGTLVEGYC--RLRRVDRAIRLVKEMRKE 173 (396)
Q Consensus 121 ~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~ 173 (396)
. =.++...+-. ........++.+.. ..|+.++|..+-..+.+.
T Consensus 80 ~----------R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 80 A----------RKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp H----------HHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred H----------HHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 1 1122222211 12233344444433 347888888777777654
No 241
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.58 E-value=0.34 Score=33.51 Aligned_cols=148 Identities=9% Similarity=0.039 Sum_probs=71.9
Q ss_pred HHHHHHHH--HHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHH
Q 016027 35 TFVILIRR--YARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVY 112 (396)
Q Consensus 35 ~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 112 (396)
....|+.+ +.-.|..++..++..+..... +..-++-++--....-+-+-..++++..-+. -|
T Consensus 7 l~kkLmeAK~~ildG~v~qGveii~k~~~ss-------ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki-----FD---- 70 (172)
T 1wy6_A 7 IIRKLMDAKKFLLDGYIDEGVKIVLEITKSS-------TKSEYNWFICNLLESIDCRYMFQVLDKIGSY-----FD---- 70 (172)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG-----SC----
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHcCCC-------CccccceeeeecchhhchhHHHHHHHHHhhh-----cC----
Confidence 34444433 445677777777777766642 2223443443333444444444444443221 01
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 016027 113 NILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEA 192 (396)
Q Consensus 113 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 192 (396)
....|+.......+-.+- .+...+...+......|.-++-.+++..+... .+|++.....+..+|.+.
T Consensus 71 ------is~C~NlKrVi~C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Kl 138 (172)
T 1wy6_A 71 ------LDKCQNLKSVVECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRV 138 (172)
T ss_dssp ------GGGCSCTHHHHHHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHT
T ss_pred ------cHhhhcHHHHHHHHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHh
Confidence 122444444444443321 13344444555555555555555555554332 245555555555666666
Q ss_pred CCHHHHHHHHHHHHhcCC
Q 016027 193 GRFEEVSGMMERFLVCEP 210 (396)
Q Consensus 193 ~~~~~a~~~~~~~~~~~~ 210 (396)
|+..+|.+++.++-+.|.
T Consensus 139 g~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 139 GDERDATTLLIEACKKGE 156 (172)
T ss_dssp TCHHHHHHHHHHHHHTTC
T ss_pred cchhhHHHHHHHHHHhhh
Confidence 666666666666555554
No 242
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.38 E-value=0.47 Score=43.94 Aligned_cols=136 Identities=11% Similarity=0.011 Sum_probs=84.9
Q ss_pred CCCCChhHHHHHHHHHHHcCC-HHHHHHHHHHHhhcccccCCCCchhHHHHH--HHHHHHcC-ChHHHHHHHHHHhhcc-
Q 016027 28 PDFVSKDTFVILIRRYARAGM-VEAAIWTFEFANNLDMVKNFDSGASLFEIL--LDSLCKQG-RVKAASEYFHKRKELD- 102 (396)
Q Consensus 28 p~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~-~~~~A~~~~~~~~~~~- 102 (396)
|+.++......++..+...|+ .+.|+.+|+++.... |...++... +......+ +--+|.+++.+..+..
T Consensus 243 ~t~v~N~L~~~Ll~~~~~t~~~~~~a~~~le~L~~~~------p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~ 316 (754)
T 4gns_B 243 ATIVNNYLMYSLKSFIAITPSLVDFTIDYLKGLTKKD------PIHDIYYKTAMITILDHIETKELDMITILNETLDPLL 316 (754)
T ss_dssp CCSSSSHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHC------GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHH
T ss_pred CccccHHHHHHHHHHHcccccHHHHHHHHHHHHHhhC------CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhh
Confidence 444444455567777777777 588999999998863 333333222 22222222 2234555555543210
Q ss_pred ---CCCCC-Ch----------HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHH
Q 016027 103 ---QSWAP-TV----------RVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVK 168 (396)
Q Consensus 103 ---~~~~~-~~----------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 168 (396)
....+ +. .....-+..+...|+++-|+++-++..... +-+-.+|..|..+|...|+++.|+-.++
T Consensus 317 ~~~~~l~~~~~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLN 395 (754)
T 4gns_B 317 SLLNDLPPRDADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAIN 395 (754)
T ss_dssp HHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhhhhhcccccccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHh
Confidence 00011 11 122223455667899999999999988763 3367899999999999999999999888
Q ss_pred HH
Q 016027 169 EM 170 (396)
Q Consensus 169 ~~ 170 (396)
.+
T Consensus 396 Sc 397 (754)
T 4gns_B 396 SM 397 (754)
T ss_dssp HS
T ss_pred cC
Confidence 77
No 243
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.05 E-value=0.00015 Score=61.74 Aligned_cols=206 Identities=16% Similarity=0.139 Sum_probs=126.5
Q ss_pred hhhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHH
Q 016027 3 KVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSL 82 (396)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 82 (396)
.++...|+..+|++.| ++.+ +|. .|..++....+.|++++-+..+.-+++. ..++.+=+.|+.+|
T Consensus 62 kAqL~~~~v~eAIdsy---IkA~-Dps-----~y~eVi~~A~~~~~~edLv~yL~MaRk~------~ke~~IDteLi~ay 126 (624)
T 3lvg_A 62 KAQLQKGMVKEAIDSY---IKAD-DPS-----SYMEVVQAANTSGNWEELVKYLQMARKK------ARESYVETELIFAL 126 (624)
T ss_dssp HHTTTSSSCTTTTTSS---CCCS-CCC-----SSSHHHHHTTTSSCCTTHHHHHHTTSTT------CCSTTTTHHHHHHH
T ss_pred HHHHccCchHHHHHHH---HhCC-ChH-----HHHHHHHHHHhCCCHHHHHHHHHHHHHH------hcccccHHHHHHHH
Confidence 4556667777776543 3322 333 6888999999999999999998877765 34445556788889
Q ss_pred HHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCC--------------------CCC
Q 016027 83 CKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKEN--------------------VTP 142 (396)
Q Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------------------~~~ 142 (396)
++.++..+-.+.+. .||..-...+..-|...|.++.|.-+|..+.... -.-
T Consensus 127 Ak~~rL~elEefl~---------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAn 197 (624)
T 3lvg_A 127 AKTNRLAELEEFIN---------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKAN 197 (624)
T ss_dssp HTSCSSSTTTSTTS---------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCC
T ss_pred HhhCcHHHHHHHHc---------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99888766443321 1455455666777777777777766665432210 012
Q ss_pred ChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHH
Q 016027 143 NVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVK 222 (396)
Q Consensus 143 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 222 (396)
++.||..+-.+|...+.+.-|.-.--.++- .+.....++..|...|.+++-+.+++..+.. .......|+-|.-
T Consensus 198 s~ktWKeV~~ACvd~~EfrLAqicGLniIv-----hadeL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaI 271 (624)
T 3lvg_A 198 STRTWKEVCFACVDGKEFRLAQMCGLHIVV-----HADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAI 271 (624)
T ss_dssp SSCSHHHHTHHHHHSCTTTTTTHHHHHHHC-----CSSCCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHH
T ss_pred ChhHHHHHHHHHhCchHHHHHHHhcchhcc-----cHHHHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHH
Confidence 566777777777777776655433322221 1112234455566777777777777776643 2346677777777
Q ss_pred HHHhcCChHHHHHHHHH
Q 016027 223 GYCKAGDLEGASKILKM 239 (396)
Q Consensus 223 ~~~~~~~~~~a~~~~~~ 239 (396)
.|++- ++++..+.++.
T Consensus 272 LYsKY-~PeKlmEHlkl 287 (624)
T 3lvg_A 272 LYSKF-KPQKMREHLEL 287 (624)
T ss_dssp HHHSS-CTTHHHHHHTT
T ss_pred HHHhc-CHHHHHHHHHH
Confidence 77654 45554444443
No 244
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.04 E-value=0.54 Score=32.58 Aligned_cols=138 Identities=12% Similarity=0.059 Sum_probs=84.9
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 016027 225 CKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAI 304 (396)
Q Consensus 225 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 304 (396)
.-.|..++..++..+..... +..-+|.++--....-+-+-..++++.+-+. .|. ..+|++....
T Consensus 18 ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrVi 81 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVV 81 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHH
T ss_pred HHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHHH
Confidence 34677888888887777642 5556666666555556666666666655332 121 1233333333
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhccc
Q 016027 305 QVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFKKRGMTALAQKLCNVMSSVP 384 (396)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 384 (396)
..+-.+- .+.......+..+...|+-++-.+++..+.. +-+|++.....+..+|.+.|+..+|.+++.+.-+.+
T Consensus 82 ~C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 82 ECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 3332221 1445556666777777887777777777544 236777777788888888888888888877765544
No 245
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.98 E-value=0.18 Score=46.64 Aligned_cols=52 Identities=17% Similarity=0.206 Sum_probs=31.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 016027 293 ILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDM 345 (396)
Q Consensus 293 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 345 (396)
.+...|+++-|+.+-++.....+. +-.+|..|..+|...|+++.|+-.+..+
T Consensus 346 FLl~K~~~elAL~~Ak~AV~~aPs-eF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTELALD-SFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHhccCcHHHHHHHHHHHHhcCch-hhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 344556666666666666655322 4566666666666666666666665544
No 246
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=94.94 E-value=0.39 Score=33.14 Aligned_cols=66 Identities=8% Similarity=0.010 Sum_probs=28.0
Q ss_pred CChhhHHHHHHHHHhcCCH---HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 016027 282 PDRLTYHILLKILCKEDKL---DLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIR 347 (396)
Q Consensus 282 ~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 347 (396)
|+..+--.+..++.++.+. .+++.+++.+.+.+..-....+-.+.-++.+.|++++|.+..+.+++
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3333333344444443322 23444444444433211233333444445555555555555555544
No 247
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.79 E-value=1.9 Score=37.52 Aligned_cols=255 Identities=14% Similarity=0.072 Sum_probs=144.0
Q ss_pred cCChhHHHHHHHHHHhC-----CCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHH----HHH
Q 016027 122 SKNVKDAERFWLEMRKE-----NVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKE-GIEPNAIVYNTVIDG----LVE 191 (396)
Q Consensus 122 ~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~----~~~ 191 (396)
.++++.|++.+-.+.+. ...........++..|...++++...+.+..+.+. |.. ......++.. ...
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql--k~ai~~~V~~~~~~l~~ 106 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL--KLSIQYMIQKVMEYLKS 106 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS--HHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHhc
Confidence 37788888887666532 23335667788899999999999988877766543 322 2223333332 222
Q ss_pred cCCHHH--HHHHHHHHHhc--C-CCC---chhhHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCC---hhhHHHHHHH
Q 016027 192 AGRFEE--VSGMMERFLVC--E-PGP---TMVTYTSLVKGYCKAGDLEGASKILKMMISR--GFLPS---PTTYNYFFRY 258 (396)
Q Consensus 192 ~~~~~~--a~~~~~~~~~~--~-~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~ 258 (396)
....+. -..+.+.+... | ... .......|...+...|++.+|.+++..+... +..+. ...+...++.
T Consensus 107 ~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl 186 (445)
T 4b4t_P 107 SKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMEL 186 (445)
T ss_dssp HCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 332222 11122111110 0 001 1122356778888899999999999888643 22211 2356667788
Q ss_pred HhccCCHHHHHHHHHHHHH----CCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCChhhH----HHHHH
Q 016027 259 FSKFGKVEDAMNLYRKMIE----SGYTPD--RLTYHILLKILCKEDKLDLAIQVSKEMKCR-GCDIDLDTS----TMLIH 327 (396)
Q Consensus 259 ~~~~~~~~~a~~~~~~~~~----~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~----~~l~~ 327 (396)
|...+++..|..++.++.. ....|+ ...+...+..+...+++.+|...|.++... ...-++..+ ..++.
T Consensus 187 ~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~ 266 (445)
T 4b4t_P 187 SILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVY 266 (445)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHH
Confidence 8889999999988888643 222222 234566677777888998888888777642 111133222 22233
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc--CCchHHHHHHH
Q 016027 328 LLCRMYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFKKR--GMTALAQKLCN 378 (396)
Q Consensus 328 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--g~~~~A~~~~~ 378 (396)
+..-.+....--.++........-++...+..++.+|... .+++...+.|+
T Consensus 267 ~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~ 319 (445)
T 4b4t_P 267 FLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYE 319 (445)
T ss_dssp HHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTC
T ss_pred HHHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHH
Confidence 3333444444444554444433345566777777777653 23444444443
No 248
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.31 E-value=0.5 Score=40.26 Aligned_cols=72 Identities=11% Similarity=0.106 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHh-----CCCCCChhHHH
Q 016027 74 LFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRK-----ENVTPNVVTYG 148 (396)
Q Consensus 74 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 148 (396)
+...++..+...|++++|...+..+...+|- +...|..++.++.+.|+..+|++.|+.+.. .|+.|+..+-.
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~---~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPY---REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 3556778888899999999999998888876 778999999999999999999999988654 38888876643
No 249
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=94.29 E-value=0.9 Score=31.80 Aligned_cols=68 Identities=9% Similarity=0.003 Sum_probs=38.4
Q ss_pred CCChhhHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 016027 281 TPDRLTYHILLKILCKEDK---LDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRR 348 (396)
Q Consensus 281 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 348 (396)
.|+..+-..+..++.++.. ..+++.+++.+.+.++.-.....-.|.-++.+.|++++|.+..+.+++.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 4455555555555665543 3356666666665433223344445556666667777777766666664
No 250
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=94.28 E-value=0.34 Score=31.37 Aligned_cols=49 Identities=8% Similarity=-0.105 Sum_probs=29.0
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 016027 299 KLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIR 347 (396)
Q Consensus 299 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 347 (396)
+.-+..+-++.+.....-|++.+..+.+++|-+.+++..|.++|+-+..
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3445555555555555556666666666666666666666666665544
No 251
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.18 E-value=0.28 Score=41.77 Aligned_cols=75 Identities=11% Similarity=0.067 Sum_probs=62.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHH-----cCCCCCHHHHHHH
Q 016027 111 VYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRK-----EGIEPNAIVYNTV 185 (396)
Q Consensus 111 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l 185 (396)
+...++..+...|++.++...+..+.... +.+...+..+|.++.+.|+..+|++.|+.+.+ .|+.|+..+-...
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 45667788889999999999999988764 44888999999999999999999999998765 4999998775544
Q ss_pred H
Q 016027 186 I 186 (396)
Q Consensus 186 ~ 186 (396)
-
T Consensus 252 ~ 252 (388)
T 2ff4_A 252 E 252 (388)
T ss_dssp H
T ss_pred H
Confidence 3
No 252
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=94.08 E-value=0.66 Score=32.03 Aligned_cols=68 Identities=10% Similarity=-0.028 Sum_probs=45.4
Q ss_pred hhHHHHHHHHHHHcCCH---HHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCC
Q 016027 33 KDTFVILIRRYARAGMV---EAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQS 104 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 104 (396)
..+-...+-++.+..+. .+++.+++.+.+.+ .......+..|+-++.+.|++++|.+..+.+.+..|+
T Consensus 40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~----~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~ 110 (134)
T 3o48_A 40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA----ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 110 (134)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC----GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTT
T ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC----cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 66777777777776654 35777777776642 1124556667777777888888888888777766444
No 253
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=92.47 E-value=0.84 Score=31.44 Aligned_cols=45 Identities=13% Similarity=0.138 Sum_probs=22.6
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhc
Q 016027 338 ASAEFEDMIRRGLVPHYLTFKRLNDEFKKRGMTALAQKLCNVMSS 382 (396)
Q Consensus 338 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 382 (396)
..+-++.+...++.|++......+++|.+.+++..|+++++-++.
T Consensus 72 lrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~ 116 (152)
T 2y69_E 72 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 116 (152)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 334444444444555555555555555555555555555555443
No 254
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.22 E-value=4 Score=35.22 Aligned_cols=99 Identities=8% Similarity=-0.090 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhC--CCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcC-CCCCHHHHH---
Q 016027 110 RVYNILLNGWFRSKNVKDAERFWLEMRKE--NVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEG-IEPNAIVYN--- 183 (396)
Q Consensus 110 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~--- 183 (396)
.++..++..+.+.|++++|.+.|.++... +..--...+-..++.+...+++..+...+.++...- -.++....+
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 35677888888999999999999988765 333345567778888888899999888888875431 112222211
Q ss_pred -HHHHHHHHcCCHHHHHHHHHHHHhc
Q 016027 184 -TVIDGLVEAGRFEEVSGMMERFLVC 208 (396)
Q Consensus 184 -~l~~~~~~~~~~~~a~~~~~~~~~~ 208 (396)
.-+..+...+++..|.+.|-+....
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 1122234567888888877776554
No 255
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=92.18 E-value=8.4 Score=36.82 Aligned_cols=51 Identities=16% Similarity=0.098 Sum_probs=22.1
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHh
Q 016027 156 RLRRVDRAIRLVKEMRKEGIEPNAIVYN--TVIDGLVEAGRFEEVSGMMERFLV 207 (396)
Q Consensus 156 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~ 207 (396)
..|+.+.+..+++.+.... .|....-. ++.-+|+..|+.....+++..+..
T Consensus 536 ~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~ 588 (963)
T 4ady_A 536 NYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVS 588 (963)
T ss_dssp TTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH
T ss_pred hCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcc
Confidence 4455555555555554431 12211111 222334455555544445555544
No 256
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.15 E-value=1.8 Score=37.37 Aligned_cols=101 Identities=10% Similarity=-0.064 Sum_probs=73.8
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhC---CCCCChhH--H
Q 016027 73 SLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKE---NVTPNVVT--Y 147 (396)
Q Consensus 73 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~--~ 147 (396)
.+...++..|.+.|++++|.+.|.++.....+...-...+-.+++.+...+++..+...+.+.... +..|+... .
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 457789999999999999999999998765555556778888999999999999999999887543 32222221 1
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHc
Q 016027 148 GTLVEGYCRLRRVDRAIRLVKEMRKE 173 (396)
Q Consensus 148 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 173 (396)
..-+..+...+++..|-+.|-+....
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 11222345668899988888776554
No 257
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=91.92 E-value=4.4 Score=33.03 Aligned_cols=182 Identities=13% Similarity=0.083 Sum_probs=100.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHH
Q 016027 40 IRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGW 119 (396)
Q Consensus 40 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 119 (396)
++.....|++=+|.+.++ .+..-|.+++++++|++++..-.. .+
T Consensus 20 l~~~I~~G~yYEAhQ~~R-------------------tl~~Ry~~~~~~~eAidlL~~ga~-----------------~l 63 (312)
T 2wpv_A 20 FENKIKAGDYYEAHQTLR-------------------TIANRYVRSKSYEHAIELISQGAL-----------------SF 63 (312)
T ss_dssp HHHHHHHTCHHHHHHHHH-------------------HHHHHHHHTTCHHHHHHHHHHHHH-----------------HH
T ss_pred HHHHhhccChHHHHHHHH-------------------HHHHHHHHhcCHHHHHHHHHHHHH-----------------HH
Confidence 344455666666665544 455566777888888887655322 24
Q ss_pred HhcCChhHHHHH----HHHHHhCCCCCChhHHHHHHHHHHccCCHH-HHHHHHHHHH----HcC--CCCCHHHHHHHHHH
Q 016027 120 FRSKNVKDAERF----WLEMRKENVTPNVVTYGTLVEGYCRLRRVD-RAIRLVKEMR----KEG--IEPNAIVYNTVIDG 188 (396)
Q Consensus 120 ~~~~~~~~a~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~ 188 (396)
.+.|+...|-++ .+-..+.+++++......++..+.....-+ .=.+++++++ +.| ..-++.....+...
T Consensus 64 l~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~ 143 (312)
T 2wpv_A 64 LKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSK 143 (312)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHH
T ss_pred HHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHH
Confidence 455665555443 444455677778777777777765533111 1123333333 222 12367778888888
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhc---CChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCH
Q 016027 189 LVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKA---GDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKV 265 (396)
Q Consensus 189 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 265 (396)
|.+.|++.+|...|-.. ...+...+..++.-+... |...++ +...-.+++ -|...++.
T Consensus 144 ~~~e~~~~~A~~H~i~~----~~~s~~~~a~~l~~w~~~~~~~~~~e~--------------dlf~~RaVL-~yL~l~n~ 204 (312)
T 2wpv_A 144 LLEGDFVYEAERYFMLG----THDSMIKYVDLLWDWLCQVDDIEDSTV--------------AEFFSRLVF-NYLFISNI 204 (312)
T ss_dssp HHHTTCHHHHHHHHHTS----CHHHHHHHHHHHHHHHHHTTCCCHHHH--------------HHHHHHHHH-HHHHTTBH
T ss_pred HhhcCCHHHHHHHHHhC----CCccHHHHHHHHHHHHHhcCCCCcchH--------------HHHHHHHHH-HHHHhcCH
Confidence 99999998888766521 111345555555444443 332221 111122222 23456777
Q ss_pred HHHHHHHHHHH
Q 016027 266 EDAMNLYRKMI 276 (396)
Q Consensus 266 ~~a~~~~~~~~ 276 (396)
..|..++....
T Consensus 205 ~~A~~~~~~f~ 215 (312)
T 2wpv_A 205 SFAHESKDIFL 215 (312)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777776654
No 258
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=91.37 E-value=6 Score=33.53 Aligned_cols=300 Identities=10% Similarity=0.010 Sum_probs=158.6
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHc-CChHHHHHHHHHHhhccCCCCCChHH
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQ-GRVKAASEYFHKRKELDQSWAPTVRV 111 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~ 111 (396)
..+...++..|.+.|+.++..+++......-....-.....+...++..+... +..+.-.++.....+.... +..+
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~---~~r~ 95 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ---EKRT 95 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH---TTCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH---HHHH
Confidence 35788999999999999999999987766432211112233455666666553 3334444444443332101 1122
Q ss_pred H------HHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-----hhHHHHHHHHHHccCCHHHHHHHHHHHHHc--CCCCC
Q 016027 112 Y------NILLNGWFRSKNVKDAERFWLEMRKENVTPN-----VVTYGTLVEGYCRLRRVDRAIRLVKEMRKE--GIEPN 178 (396)
Q Consensus 112 ~------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~ 178 (396)
| ..++..|...|++.+|.+++.++.+.=-..| ...+..-++.|...+++.++...+...... .+.++
T Consensus 96 flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~ 175 (394)
T 3txn_A 96 FLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCP 175 (394)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCC
Confidence 3 2578889999999999999988876411112 234455667788899999999988877653 23344
Q ss_pred HHHHHHH----HHHHH-HcCCHHHHHHHHHHHHhcCCCCc------hhhHHHHHHHHHhcCChHHHHHHHH-HHHHCCCC
Q 016027 179 AIVYNTV----IDGLV-EAGRFEEVSGMMERFLVCEPGPT------MVTYTSLVKGYCKAGDLEGASKILK-MMISRGFL 246 (396)
Q Consensus 179 ~~~~~~l----~~~~~-~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~ 246 (396)
+.....+ ...+. ..++|..|...|-+....-.... ...|..+.. .-.++..+...++. .....-..
T Consensus 176 p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~a--Ll~~~r~el~~~l~~~~~~~~~~ 253 (394)
T 3txn_A 176 PKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCK--IMLGQSDDVNQLVSGKLAITYSG 253 (394)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH--HHTTCGGGHHHHHHSHHHHTTCS
T ss_pred HHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHH--HHcCCHHHHHHHhccccccccCC
Confidence 4333222 23355 68899999888776643211111 112322222 22233333333322 11111124
Q ss_pred CChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 016027 247 PSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLI 326 (396)
Q Consensus 247 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 326 (396)
|....+..++.++ ..+++.+...++..... .+..|+.....+-..+.+ - -...+.++.+ +-...++..+.
T Consensus 254 pei~~l~~L~~a~-~~~dl~~f~~iL~~~~~-~l~~D~~l~~h~~~L~~~--I---r~~~L~~i~~---pYsrIsl~~iA 323 (394)
T 3txn_A 254 RDIDAMKSVAEAS-HKRSLADFQAALKEYKK-ELAEDVIVQAHLGTLYDT--M---LEQNLCRIIE---PYSRVQVAHVA 323 (394)
T ss_dssp HHHHHHHHHHHHH-HTTCHHHHHHHHHHSTT-TTTTSHHHHHHHHHHHHH--H---HHHHHHHHHT---TCSEEEHHHHH
T ss_pred ccHHHHHHHHHHH-HhCCHHHHHHHHHHHHH-HHhcChHHHHHHHHHHHH--H---HHHHHHHHhH---hhceeeHHHHH
Confidence 5555566666665 45667666666655432 233344321111000000 0 0111111211 22445556666
Q ss_pred HHHHhcCChhHHHHHHHHHHHCC
Q 016027 327 HLLCRMYKFDEASAEFEDMIRRG 349 (396)
Q Consensus 327 ~~~~~~~~~~~a~~~~~~~~~~~ 349 (396)
..+.- ..+++...+-+|+..|
T Consensus 324 ~~l~l--s~~evE~~L~~lI~dg 344 (394)
T 3txn_A 324 ESIQL--PMPQVEKKLSQMILDK 344 (394)
T ss_dssp HHHTC--CHHHHHHHHHHHHHTT
T ss_pred HHHCc--CHHHHHHHHHHHHHCC
Confidence 55543 5678888888887654
No 259
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=90.53 E-value=2.4 Score=27.53 Aligned_cols=49 Identities=8% Similarity=0.110 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 016027 265 VEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCR 313 (396)
Q Consensus 265 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 313 (396)
.-+..+-+..+...++.|++....+.+++|.+.+++..|.++++-++.+
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3344455555555555555555555555555555555555555555543
No 260
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=90.21 E-value=1 Score=35.57 Aligned_cols=122 Identities=15% Similarity=0.097 Sum_probs=75.6
Q ss_pred hhhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHH
Q 016027 3 KVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSL 82 (396)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 82 (396)
..+.+.|++++|+......++. .|. +...-..+++.++-.|++++|.+-++.+.+..+. ..+....|..++.+-
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~--~P~--da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~--~~~~a~~yr~lI~aE 78 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKA--SPK--DASLRSSFIELLCIDGDFERADEQLMQSIKLFPE--YLPGASQLRHLVKAA 78 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHT--CTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG--GHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHh--CCc--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch--hhHHHHHHHHHHHHH
Confidence 4578899999999999999986 454 4667778999999999999999999999887421 112222233333321
Q ss_pred HHcCChHHHHHHHHHHhhccCCCCCChHHHH-HHHHHH--HhcCChhHHHHHHHHHHhC
Q 016027 83 CKQGRVKAASEYFHKRKELDQSWAPTVRVYN-ILLNGW--FRSKNVKDAERFWLEMRKE 138 (396)
Q Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~-~l~~~~--~~~~~~~~a~~~~~~~~~~ 138 (396)
. ..+ ++|.- ...|++.-....|. .++.+. ...|+.++|.++-..+.+.
T Consensus 79 ~----~R~--~vfaG--~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 79 Q----ARK--DFAQG--AATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp H----HHH--HHTTS--CCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred H----HHH--HHHcC--CCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 1 111 12211 11112211222333 344443 3469999999998888654
No 261
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=90.20 E-value=3.5 Score=28.87 Aligned_cols=67 Identities=16% Similarity=0.124 Sum_probs=31.0
Q ss_pred CChHHHHHHHHHHHhcCC---hhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 016027 107 PTVRVYNILLNGWFRSKN---VKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKE 173 (396)
Q Consensus 107 ~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 173 (396)
|+..+-....-++++..+ ..+++.+++.+...+..-.....-.|.-++.+.|++++|.++.+.+++.
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 444444444444444443 2344455555544332212333344444555555555555555555554
No 262
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=90.04 E-value=11 Score=34.29 Aligned_cols=309 Identities=8% Similarity=-0.009 Sum_probs=162.0
Q ss_pred hhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHH--cCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHH
Q 016027 5 LAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYAR--AGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSL 82 (396)
Q Consensus 5 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 82 (396)
..+.|++..+..+.. .+.. .| ...|..--..-.. ....++...++++-... |.....-...+..+
T Consensus 16 a~~~~~~~~~~~l~~-~l~~--~p----L~~yl~y~~l~~~l~~~~~~ev~~Fl~~~~~~------p~~~~Lr~~~l~~l 82 (618)
T 1qsa_A 16 AWDNRQMDVVEQMMP-GLKD--YP----LYPYLEYRQITDDLMNQPAVTVTNFVRANPTL------PPARTLQSRFVNEL 82 (618)
T ss_dssp HHHTTCHHHHHHHSG-GGTT--ST----THHHHHHHHHHHTGGGCCHHHHHHHHHHCTTC------HHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHH-hhcC--CC----cHHHHHHHHHHhCcccCCHHHHHHHHHHCCCC------hhHHHHHHHHHHHH
Confidence 345677777766532 2321 22 1223222222222 22455555555543332 44455556677777
Q ss_pred HHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHH
Q 016027 83 CKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDR 162 (396)
Q Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 162 (396)
.+.+++...+..+.. .+.+...-.....+....|+..+|......+-..|.. ....+..++..+.+.|....
T Consensus 83 ~~~~~w~~~l~~~~~-------~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~-~p~~c~~l~~~~~~~g~lt~ 154 (618)
T 1qsa_A 83 ARREDWRGLLAFSPE-------KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACDKLFSVWRASGKQDP 154 (618)
T ss_dssp HHTTCHHHHHHHCCS-------CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHHHHHHHHHHTTCSCH
T ss_pred HhCCCHHHHHHhccC-------CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-CcHHHHHHHHHHHHCCCCCH
Confidence 788888777664432 1235666666777788889888888877777666532 55667777777776664433
Q ss_pred --HHHHHHHHHHcC-----------CCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchh---hHHHHHHHHH
Q 016027 163 --AIRLVKEMRKEG-----------IEPNAIVY-NTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMV---TYTSLVKGYC 225 (396)
Q Consensus 163 --a~~~~~~~~~~~-----------~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~ 225 (396)
...-++.+...| ++++.... ..++.... +...+...... ..++.. .+...+.-+.
T Consensus 155 ~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~---~p~~~~~~~~~-----~~~~~~~~~~~~~~~~rla 226 (618)
T 1qsa_A 155 LAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLAN---NPNTVLTFART-----TGATDFTRQMAAVAFASVA 226 (618)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHH---CGGGHHHHHHH-----SCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHh---ChHhHHHHHhc-----cCCChhhHHHHHHHHHHHH
Confidence 333333333333 11111111 11111111 11111111111 111111 1112222233
Q ss_pred hcCChHHHHHHHHHHHHCCCCCChhhH----HHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHH
Q 016027 226 KAGDLEGASKILKMMISRGFLPSPTTY----NYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLD 301 (396)
Q Consensus 226 ~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 301 (396)
+ .+.+.|...+....+... .+.... ..+.......+...++...+....... .+.......+....+.|+++
T Consensus 227 r-~d~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~ 302 (618)
T 1qsa_A 227 R-QDAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRR 302 (618)
T ss_dssp H-HCHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHH
T ss_pred h-cCHHHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHH
Confidence 3 377888888888765432 233222 223333444453456666666654432 34444445555556779999
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 016027 302 LAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIR 347 (396)
Q Consensus 302 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 347 (396)
.|...|..+..... ......--+..++...|+.++|..+|..+..
T Consensus 303 ~a~~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 303 GLNTWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 99998888765321 1344455567777888999999999988875
No 263
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.33 E-value=1.9 Score=37.75 Aligned_cols=66 Identities=18% Similarity=0.061 Sum_probs=46.0
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCc---hhHHHHHHHHHHHcCChHHHHHHHHHHhhc
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSG---ASLFEILLDSLCKQGRVKAASEYFHKRKEL 101 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 101 (396)
...++.+++.|...+.++.|..+..+..-... ..++ ...+..++..+.-.+++.+|.+.+..+...
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~---~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHT---DVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTT---TSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcc---cCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 34677888888888888888888887753210 0111 223445677888888888888888887764
No 264
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=88.15 E-value=4.9 Score=27.78 Aligned_cols=46 Identities=9% Similarity=0.128 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016027 267 DAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKC 312 (396)
Q Consensus 267 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 312 (396)
+..+-+..+...++.|++......+++|.+.+++..|.++++-++.
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~ 116 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 116 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444444444445555555555555555555555555555555544
No 265
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=87.51 E-value=12 Score=31.67 Aligned_cols=234 Identities=10% Similarity=-0.011 Sum_probs=134.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhccCCCC--CChHHHHHHHHHHHhc-CChhHHHHHHHHHHhCCCCCChhHH---
Q 016027 74 LFEILLDSLCKQGRVKAASEYFHKRKELDQSWA--PTVRVYNILLNGWFRS-KNVKDAERFWLEMRKENVTPNVVTY--- 147 (396)
Q Consensus 74 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~--- 147 (396)
+...|+..|.+.|+.++..+++......-+.+. ........++..+... +..+.-.++..+..+..-. ...+|
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~r~flr~ 99 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ-EKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH-TTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 466799999999999999999988655422211 1234466777777664 3444445555544432111 22233
Q ss_pred ---HHHHHHHHccCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCchhh-
Q 016027 148 ---GTLVEGYCRLRRVDRAIRLVKEMRKEGIEPN-----AIVYNTVIDGLVEAGRFEEVSGMMERFLVCE--PGPTMVT- 216 (396)
Q Consensus 148 ---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~- 216 (396)
.-++..|...|++.+|.+++..+.+.-...| ..++..-+..|...+++.++...+....... +.+++..
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 2578899999999999999999887421212 2345556678899999999999998876431 1122222
Q ss_pred ---HHHHHHHHH-hcCChHHHHHHHHHHHHCCCCCC------hhhHHHHHHHHhccCCHHHHHHHHH-HHHHCCCCCChh
Q 016027 217 ---YTSLVKGYC-KAGDLEGASKILKMMISRGFLPS------PTTYNYFFRYFSKFGKVEDAMNLYR-KMIESGYTPDRL 285 (396)
Q Consensus 217 ---~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~ 285 (396)
...-...+. ..++|..|...|-+..+.-...+ ...|..+.... .++..+.-.++. .....-..|...
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl--~~~r~el~~~l~~~~~~~~~~pei~ 257 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIM--LGQSDDVNQLVSGKLAITYSGRDID 257 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH--TTCGGGHHHHHHSHHHHTTCSHHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHH--cCCHHHHHHHhccccccccCCccHH
Confidence 122233455 78999999888877643200111 11232232222 223222222221 111111235555
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016027 286 TYHILLKILCKEDKLDLAIQVSKEMK 311 (396)
Q Consensus 286 ~~~~l~~~~~~~~~~~~a~~~~~~~~ 311 (396)
.+..++.++ ..+++.+...++....
T Consensus 258 ~l~~L~~a~-~~~dl~~f~~iL~~~~ 282 (394)
T 3txn_A 258 AMKSVAEAS-HKRSLADFQAALKEYK 282 (394)
T ss_dssp HHHHHHHHH-HTTCHHHHHHHHHHST
T ss_pred HHHHHHHHH-HhCCHHHHHHHHHHHH
Confidence 566666654 4577877777766653
No 266
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=87.21 E-value=11 Score=30.94 Aligned_cols=164 Identities=17% Similarity=0.144 Sum_probs=85.0
Q ss_pred HHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHH----HHHHhCCCCCChhHHHHHHH
Q 016027 77 ILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFW----LEMRKENVTPNVVTYGTLVE 152 (396)
Q Consensus 77 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~----~~~~~~~~~~~~~~~~~l~~ 152 (396)
.+..-|.+.+++++|++++..-.. .+.+.|+...+-++- +-+.+.++++|......++.
T Consensus 40 Ti~~Ry~~~k~y~eAidLL~~GA~-----------------~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~ 102 (336)
T 3lpz_A 40 LVAARYSKQGNWAAAVDILASVSQ-----------------TLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLG 102 (336)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH-----------------HHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHHHHHHH-----------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 344456677777777776544221 233445554444433 33344566667666666666
Q ss_pred HHHccCCHH-HHHHHHHHHHH----cC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHH
Q 016027 153 GYCRLRRVD-RAIRLVKEMRK----EG--IEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYC 225 (396)
Q Consensus 153 ~~~~~~~~~-~a~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 225 (396)
.+.....-+ .=.++++++++ .| ..-++.....+...|.+.+++.+|...|- . +..++...+..++.-+.
T Consensus 103 L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew~ 178 (336)
T 3lpz_A 103 CLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEWY 178 (336)
T ss_dssp HHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHHH
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHHH
Confidence 665444211 11223333322 22 23356777778888888888888877763 1 23334456655554444
Q ss_pred hcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHH
Q 016027 226 KAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMI 276 (396)
Q Consensus 226 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 276 (396)
..+...+ ++...-.+++ -|...++...|..++....
T Consensus 179 ~~~~~~e--------------~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 179 KQDESHT--------------APLYCARAVL-PYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HTSCGGG--------------HHHHHHHHHH-HHHHTTCHHHHHHHHHHHH
T ss_pred HhcCCcc--------------HHHHHHHHHH-HHHHhCCHHHHHHHHHHHH
Confidence 4433211 1222222233 3344567777777665544
No 267
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=86.21 E-value=8.9 Score=28.75 Aligned_cols=89 Identities=9% Similarity=-0.012 Sum_probs=54.1
Q ss_pred HHHHHHhhcc-cccCCCCchhHHHHHHHHHHH--cCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHH
Q 016027 54 WTFEFANNLD-MVKNFDSGASLFEILLDSLCK--QGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAER 130 (396)
Q Consensus 54 ~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 130 (396)
.+++++.+.- ....+..|+......+..--. .+...++.++|..|...+-|. .-...|...+..+-..|++.+|.+
T Consensus 58 ~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~~~~~~~~p~~if~~L~~~~IG~-~~AlfYe~wA~~lE~~g~~~~A~~ 136 (202)
T 3esl_A 58 STMERCLIYIQDMETYRNDPRFLKIWIWYINLFLSNNFHESENTFKYMFNKGIGT-KLSLFYEEFSKLLENAQFFLEAKV 136 (202)
T ss_dssp HHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTSST-TBHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhcccccccCCHHHHHHHHHHHHhhcccccCCHHHHHHHHHHCCCcH-HHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4566555521 112344555543333333222 444667888888887764442 235667778888888888888888
Q ss_pred HHHHHHhCCCCCC
Q 016027 131 FWLEMRKENVTPN 143 (396)
Q Consensus 131 ~~~~~~~~~~~~~ 143 (396)
+|+.-++.+-.|-
T Consensus 137 Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 137 LLELGAENNCRPY 149 (202)
T ss_dssp HHHHHHHTTCBSH
T ss_pred HHHHHHHcCCccH
Confidence 8888887766653
No 268
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=84.76 E-value=15 Score=30.18 Aligned_cols=49 Identities=14% Similarity=0.190 Sum_probs=30.2
Q ss_pred cCchhHHHHHHHHhCCCCC---CCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 016027 9 KEFDSAWCLLLDKIGGHEV---PDFVSKDTFVILIRRYARAGMVEAAIWTFEFA 59 (396)
Q Consensus 9 g~~~~A~~~~~~~~~~~~~---p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 59 (396)
...++.++-++..++.+.. -. ..+.+.++..-|.+.+++++|++++-.-
T Consensus 10 ~~~~~~i~rl~~~I~~G~y~~~YE--AHQ~~RTi~~Ry~~~k~y~eAidLL~~G 61 (336)
T 3lpz_A 10 NKIERIIARLQRRIAEGQPEEQYE--AAQETRLVAARYSKQGNWAAAVDILASV 61 (336)
T ss_dssp CHHHHHHHHHHHHHHHCCHHHHHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCccccH--HHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 3455555556666654321 11 1356777788888888888888876533
No 269
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=79.67 E-value=26 Score=29.24 Aligned_cols=62 Identities=10% Similarity=0.277 Sum_probs=32.5
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC--HHHHHHHHHHHHHcC
Q 016027 252 YNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDK--LDLAIQVSKEMKCRG 314 (396)
Q Consensus 252 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~ 314 (396)
...++.-|...++.++|.+.++++...... ...+...+..++-+.++ .+....++..+...+
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~g 283 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSS 283 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCC
Confidence 455667777778888888877776432111 12223333334433322 234556666666554
No 270
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=76.22 E-value=18 Score=25.68 Aligned_cols=50 Identities=10% Similarity=0.084 Sum_probs=21.5
Q ss_pred HHHHHHHHHhCCCCCC-hhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC
Q 016027 128 AERFWLEMRKENVTPN-VVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEP 177 (396)
Q Consensus 128 a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 177 (396)
+.++|..|...|+-.. +..|......+-..|++.+|.++|+.-++.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4444444444433222 2233444444444445555555444444443333
No 271
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=74.74 E-value=24 Score=26.43 Aligned_cols=53 Identities=17% Similarity=0.149 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHhcCCCC-chhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 016027 195 FEEVSGMMERFLVCEPGP-TMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLP 247 (396)
Q Consensus 195 ~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 247 (396)
..++..+|..|...|+.. -...|......+...|++.+|.++|..-++.+-.|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 445555555555544432 23444555555555566666666665555554443
No 272
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=73.37 E-value=16 Score=23.69 Aligned_cols=14 Identities=29% Similarity=0.617 Sum_probs=6.3
Q ss_pred HHHcCCHHHHHHHH
Q 016027 189 LVEAGRFEEVSGMM 202 (396)
Q Consensus 189 ~~~~~~~~~a~~~~ 202 (396)
+...|+|++|..+.
T Consensus 49 LmNrG~Yq~Al~l~ 62 (115)
T 2uwj_G 49 LANQGRYQEALAFA 62 (115)
T ss_dssp HHHTTCHHHHHGGG
T ss_pred HHcchhHHHHHHhc
Confidence 34444444444433
No 273
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=72.60 E-value=13 Score=28.01 Aligned_cols=48 Identities=17% Similarity=0.158 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHcCCCCChhhH--------HHHHHHHHhcCChhHHHHHHHHHHHC
Q 016027 300 LDLAIQVSKEMKCRGCDIDLDTS--------TMLIHLLCRMYKFDEASAEFEDMIRR 348 (396)
Q Consensus 300 ~~~a~~~~~~~~~~~~~~~~~~~--------~~l~~~~~~~~~~~~a~~~~~~~~~~ 348 (396)
++.|+.+|+.+.+...- +.... ...+..|.+.|.+++|.+++++....
T Consensus 88 LESAl~v~~~I~~e~~l-~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTL-TEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHhhcC-cHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 56677777777664321 11111 12344566677777777777766553
No 274
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=72.31 E-value=17 Score=23.59 Aligned_cols=15 Identities=13% Similarity=0.244 Sum_probs=6.7
Q ss_pred HHHcCCHHHHHHHHH
Q 016027 189 LVEAGRFEEVSGMME 203 (396)
Q Consensus 189 ~~~~~~~~~a~~~~~ 203 (396)
+...|+|++|..+.+
T Consensus 50 LmNrG~Yq~Al~l~~ 64 (116)
T 2p58_C 50 LMNRGDYASALQQGN 64 (116)
T ss_dssp HHHTTCHHHHHHHHT
T ss_pred HHcchhHHHHHHhcC
Confidence 344444444444433
No 275
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=70.96 E-value=24 Score=31.12 Aligned_cols=62 Identities=16% Similarity=-0.026 Sum_probs=45.1
Q ss_pred ChhhhhhccCchhHHHHHHHHhCC-CCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 016027 1 MIKVLAKAKEFDSAWCLLLDKIGG-HEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNL 62 (396)
Q Consensus 1 l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 62 (396)
|++.|...+.+++|..+..+..-- ...++..-..-++.+++.+.-.+++.+|.+.|..+.+.
T Consensus 237 lLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 237 ILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 478899999999999998877531 00111000123456789999999999999999998875
No 276
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=70.92 E-value=27 Score=25.23 Aligned_cols=52 Identities=10% Similarity=0.136 Sum_probs=29.2
Q ss_pred HHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 016027 91 ASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPN 143 (396)
Q Consensus 91 A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 143 (396)
+.++|..|...+-|. .-...|...+..+-..|++.+|.++|..-++.+-.|-
T Consensus 79 p~~if~~L~~~~IG~-~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGV-SLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp HHHHHHHHHHTTSST-TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHCCcch-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 455566555543331 2244555666666666666666666666666655554
No 277
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=70.15 E-value=34 Score=26.48 Aligned_cols=22 Identities=18% Similarity=0.122 Sum_probs=12.1
Q ss_pred HHHHHHcCChHHHHHHHHHHhh
Q 016027 79 LDSLCKQGRVKAASEYFHKRKE 100 (396)
Q Consensus 79 ~~~~~~~~~~~~A~~~~~~~~~ 100 (396)
+..+....++++|.+++++..+
T Consensus 25 LDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHH
Confidence 4455555666666665555443
No 278
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=69.58 E-value=44 Score=27.21 Aligned_cols=46 Identities=20% Similarity=0.210 Sum_probs=25.3
Q ss_pred chhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Q 016027 11 FDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEF 58 (396)
Q Consensus 11 ~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 58 (396)
.++.+.-++..++.+.--. ..+.+.++..-|.+++++++|++++..
T Consensus 13 ~~r~l~rl~~~I~~G~yYE--AhQ~~Rtl~~Ry~~~~~~~eAidlL~~ 58 (312)
T 2wpv_A 13 LAKTLQRFENKIKAGDYYE--AHQTLRTIANRYVRSKSYEHAIELISQ 58 (312)
T ss_dssp HHHHHHHHHHHHHHTCHHH--HHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccChHH--HHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 4444445555555432111 134566667777777777777776553
No 279
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=68.40 E-value=39 Score=26.15 Aligned_cols=90 Identities=9% Similarity=0.087 Sum_probs=53.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhC--CCCC----ChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 016027 114 ILLNGWFRSKNVKDAERFWLEMRKE--NVTP----NVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVID 187 (396)
Q Consensus 114 ~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 187 (396)
.-+..+....+|++|..++++..+. +.++ ........+..-.....-.-+..+.+.+ .. .++.......+.
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~ 99 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHH
Confidence 3466788899999999999876543 2221 1122233333333333333444455555 22 445666666777
Q ss_pred HHHHcCCHHHHHHHHHHHH
Q 016027 188 GLVEAGRFEEVSGMMERFL 206 (396)
Q Consensus 188 ~~~~~~~~~~a~~~~~~~~ 206 (396)
.+.+.|+.++|.++|-+..
T Consensus 100 ~L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 100 NMIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHHHHH
Confidence 8888888888888876653
No 280
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=67.19 E-value=23 Score=22.99 Aligned_cols=50 Identities=14% Similarity=0.002 Sum_probs=21.9
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 016027 119 WFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEG 174 (396)
Q Consensus 119 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 174 (396)
+...|++++|..+.+.+. -||...|..|... +.|-.+++...+.++...|
T Consensus 49 LmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~--rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 49 LANQGRYQEALAFAHGNP----WPALEPWFALCEW--HLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp HHHTTCHHHHHGGGTTCC----CGGGHHHHHHHHH--HTTCHHHHHHHHHHHHTCS
T ss_pred HHcchhHHHHHHhcCCCC----CchHHHHHHHHHH--hcccHHHHHHHHHHHHhCC
Confidence 444555555544433322 3444444444332 4444444444444444443
No 281
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=66.30 E-value=24 Score=22.93 Aligned_cols=50 Identities=12% Similarity=0.074 Sum_probs=22.1
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 016027 119 WFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEG 174 (396)
Q Consensus 119 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 174 (396)
+...|++++|..+.+.+. -||...|..|... +.|-.+++...+.++...|
T Consensus 50 LmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~--rlGl~s~le~rL~~la~sg 99 (116)
T 2p58_C 50 LMNRGDYASALQQGNKLA----YPDLEPWLALCEY--RLGLGSALESRLNRLARSQ 99 (116)
T ss_dssp HHHTTCHHHHHHHHTTSC----CGGGHHHHHHHHH--HHTCHHHHHHHHHHHTTCC
T ss_pred HHcchhHHHHHHhcCCCC----CchHHHHHHHHHH--hcccHHHHHHHHHHHHhCC
Confidence 444555555554443332 3444444444332 4444444444444444443
No 282
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=65.52 E-value=38 Score=26.53 Aligned_cols=21 Identities=10% Similarity=0.102 Sum_probs=10.1
Q ss_pred cCCHHHHHHHHHHHHHcCCCC
Q 016027 297 EDKLDLAIQVSKEMKCRGCDI 317 (396)
Q Consensus 297 ~~~~~~a~~~~~~~~~~~~~~ 317 (396)
.+......++.+.+.+.|..+
T Consensus 192 ~~~~~~~~~i~~~Ll~~g~~~ 212 (285)
T 1wdy_A 192 SSDDSDVEAITHLLLDHGADV 212 (285)
T ss_dssp CSCTTTHHHHHHHHHHTTCCS
T ss_pred ccccchHHHHHHHHHHcCCCC
Confidence 344444445555555555443
No 283
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=65.09 E-value=1e+02 Score=29.85 Aligned_cols=133 Identities=8% Similarity=0.013 Sum_probs=69.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHH
Q 016027 37 VILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILL 116 (396)
Q Consensus 37 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~ 116 (396)
..++..+...|.++-|.++...+ |.++..-..++.+|...|++++|...|+++.. ++..+......
T Consensus 814 ~~l~~~L~~~~~~~~a~eL~~~~---------~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~---gl~~~~~~~~~-- 879 (950)
T 4gq2_M 814 TELVEKLFLFKQYNACMQLIGWL---------NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL---VLYSHTSQFAV-- 879 (950)
T ss_dssp HHHHHHHHHTTCHHHHHHHGGGC---------CSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC---TTCSSCCSCGG--
T ss_pred HHHHHHHHHhcHHHHHHHHHhhc---------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh---hcccCcccccc--
Confidence 33555666666666554433222 34444445677777777777777777776543 22111000000
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHc
Q 016027 117 NGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNA----IVYNTVIDGLVEA 192 (396)
Q Consensus 117 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~ 192 (396)
......++.... . ......-|..++..+-+.+.++-+.++-+..++.--..|. ..++.+.++.+..
T Consensus 880 --------~~~~~~ll~~~e-~-~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~ 949 (950)
T 4gq2_M 880 --------LREFQEIAEKYH-H-QNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAA 949 (950)
T ss_dssp --------GHHHHHHHHHTT-T-CSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred --------hhhhhhccCccc-c-cchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhC
Confidence 000111111100 0 0112236778888888889998888888888765222222 2456666666554
Q ss_pred C
Q 016027 193 G 193 (396)
Q Consensus 193 ~ 193 (396)
|
T Consensus 950 g 950 (950)
T 4gq2_M 950 G 950 (950)
T ss_dssp C
T ss_pred C
Confidence 4
No 284
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=64.68 E-value=37 Score=25.97 Aligned_cols=52 Identities=6% Similarity=0.142 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHhCCCCCC-hhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC
Q 016027 126 KDAERFWLEMRKENVTPN-VVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEP 177 (396)
Q Consensus 126 ~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 177 (396)
+.+..+|..|...|+-.. +..|......+-..|++.+|.++|+.-++.+-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 355566666665544332 3345555556666666666666666666655444
No 285
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=63.68 E-value=78 Score=27.88 Aligned_cols=73 Identities=14% Similarity=0.022 Sum_probs=36.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHH
Q 016027 39 LIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNG 118 (396)
Q Consensus 39 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~ 118 (396)
|+........++.|...|.++.... |.+...|+.|+-.....|+.-+|.-.|-+.... ..|-..+..++...
T Consensus 158 LGDL~RY~~~~~~A~~~Y~~A~~~~-----P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~---~~Pf~~a~~nL~~~ 229 (497)
T 1ya0_A 158 LGDIARYRNQTSQAESYYRHAAQLV-----PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV---KFPFPAASTNLQKA 229 (497)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-----TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS---SBCCHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhC-----CCCCchHHHHHHHHhcccccHHHHHHHHHHHhc---CCCChhHHHHHHHH
Confidence 3333444444555666666555553 555555555555555555555555554444432 23444444444444
Q ss_pred H
Q 016027 119 W 119 (396)
Q Consensus 119 ~ 119 (396)
+
T Consensus 230 f 230 (497)
T 1ya0_A 230 L 230 (497)
T ss_dssp H
T ss_pred H
Confidence 3
No 286
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=62.16 E-value=39 Score=23.98 Aligned_cols=25 Identities=16% Similarity=-0.044 Sum_probs=10.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc
Q 016027 289 ILLKILCKEDKLDLAIQVSKEMKCR 313 (396)
Q Consensus 289 ~l~~~~~~~~~~~~a~~~~~~~~~~ 313 (396)
.....+...|++.+|.++|+.-++.
T Consensus 106 ~wA~~lE~~g~~~~A~~Vy~~Gi~~ 130 (152)
T 4a1g_A 106 AWAGHLEAQGELQHASAVLQRGIQN 130 (152)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 3333334444444444444444433
No 287
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=58.93 E-value=50 Score=25.80 Aligned_cols=50 Identities=12% Similarity=-0.103 Sum_probs=25.4
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHHcCCchHHHHHHH
Q 016027 329 LCRMYKFDEASAEFEDMIRRGLVPHYLT--FKRLNDEFKKRGMTALAQKLCN 378 (396)
Q Consensus 329 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~--~~~l~~~~~~~g~~~~A~~~~~ 378 (396)
.+..++.....++++.+.+.|..++... -...+....+.|+.+-+..+++
T Consensus 189 a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 189 ALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp HHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 3445555555666666776665544321 1122333445666665555554
No 288
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=56.80 E-value=44 Score=22.87 Aligned_cols=21 Identities=38% Similarity=0.589 Sum_probs=10.1
Q ss_pred HHHHHHhcCChHHHHHHHHHH
Q 016027 220 LVKGYCKAGDLEGASKILKMM 240 (396)
Q Consensus 220 l~~~~~~~~~~~~a~~~~~~~ 240 (396)
++.-|...|+.++|...++++
T Consensus 13 ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 13 LLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHh
Confidence 444444445555555544444
No 289
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=55.21 E-value=46 Score=23.65 Aligned_cols=63 Identities=10% Similarity=0.268 Sum_probs=35.5
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC--HHHHHHHHHHHHHcC
Q 016027 251 TYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDK--LDLAIQVSKEMKCRG 314 (396)
Q Consensus 251 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~ 314 (396)
....++.-|...++.++|...++++..... ....+...+..++-+.++ .+.+..++..+...+
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f-~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~ 75 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSS 75 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCC
Confidence 356677888888899999888888742111 012223333334444322 344566666666554
No 290
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=54.19 E-value=19 Score=28.12 Aligned_cols=55 Identities=11% Similarity=-0.071 Sum_probs=28.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCChhH-------HHHHHHHHH--ccCCHHHHHHHHHHH
Q 016027 116 LNGWFRSKNVKDAERFWLEMRKENVTPNVVT-------YGTLVEGYC--RLRRVDRAIRLVKEM 170 (396)
Q Consensus 116 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~l~~~~~--~~~~~~~a~~~~~~~ 170 (396)
+...++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+-+..+++.-
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 3345566777777777776666554444222 223333321 456665555555443
No 291
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=54.07 E-value=55 Score=23.09 Aligned_cols=44 Identities=9% Similarity=0.067 Sum_probs=19.8
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 016027 150 LVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAG 193 (396)
Q Consensus 150 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 193 (396)
++..+...+..-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 32 IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 32 VVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 33333333444455555555555443344444444444444443
No 292
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=53.72 E-value=45 Score=23.97 Aligned_cols=55 Identities=7% Similarity=-0.068 Sum_probs=30.1
Q ss_pred hhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHH------HHHHcCCHHHHHHHHHHHhh
Q 016027 6 AKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIR------RYARAGMVEAAIWTFEFANN 61 (396)
Q Consensus 6 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~------~~~~~g~~~~A~~~~~~~~~ 61 (396)
...|+|-+|=+++++.-.....++. ....|..||+ ...+.|+..-|..++.++..
T Consensus 43 Fn~g~yfeaHEvLEe~W~~~~~~~~-er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 43 YNSGEFHESHDCFEDEWYNYGRGNT-ESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHTTCHHHHHHHHHHHTTTTCSSSH-HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HhCCCchHHHHHHHHHHHhcCCCch-HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3446666666666666654333310 1344555555 33445666666666666655
No 293
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=53.40 E-value=1.2e+02 Score=26.75 Aligned_cols=77 Identities=14% Similarity=0.047 Sum_probs=56.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHH
Q 016027 76 EILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYC 155 (396)
Q Consensus 76 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 155 (396)
..|+........++.|..+|.++....|+ +...||.|+-.....|+.-+|.-.|-+.... ..|-..+...+...+.
T Consensus 156 ~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~---~G~~~nqLavla~~~~~~l~a~y~y~rsl~~-~~Pf~~a~~nL~~~f~ 231 (497)
T 1ya0_A 156 VHLGDIARYRNQTSQAESYYRHAAQLVPS---NGQPYNQLAILASSKGDHLTTIFYYCRSIAV-KFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT---BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS-SBCCHHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHHHHHHHHhCCC---CCchHHHHHHHHhcccccHHHHHHHHHHHhc-CCCChhHHHHHHHHHH
Confidence 34555555566788999999999988766 7788999988888888887777776666554 3567777777777665
Q ss_pred c
Q 016027 156 R 156 (396)
Q Consensus 156 ~ 156 (396)
+
T Consensus 232 ~ 232 (497)
T 1ya0_A 232 K 232 (497)
T ss_dssp H
T ss_pred H
Confidence 4
No 294
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=53.39 E-value=1.1e+02 Score=26.44 Aligned_cols=54 Identities=13% Similarity=0.105 Sum_probs=30.3
Q ss_pred hcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCC-----HHHHHHHHHHHHHCC
Q 016027 226 KAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGK-----VEDAMNLYRKMIESG 279 (396)
Q Consensus 226 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~ 279 (396)
+.++.+.|...+..|.+.|..|....-..+..+....|. ...|...++.....|
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g 325 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVG 325 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSC
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHhC
Confidence 346677777777777777666555444445555544443 223444455555555
No 295
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=53.28 E-value=55 Score=22.89 Aligned_cols=34 Identities=9% Similarity=-0.087 Sum_probs=13.8
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 016027 158 RRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVE 191 (396)
Q Consensus 158 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 191 (396)
+..-.|.++++.+.+.+...+..|...-+..+..
T Consensus 35 ~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e 68 (145)
T 2fe3_A 35 MAHPTADDIYKALEGKFPNMSVATVYNNLRVFRE 68 (145)
T ss_dssp SSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHH
Confidence 3333444444444444333333333333333333
No 296
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=53.19 E-value=52 Score=22.54 Aligned_cols=62 Identities=10% Similarity=0.273 Sum_probs=32.3
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC--HHHHHHHHHHHHHcC
Q 016027 252 YNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDK--LDLAIQVSKEMKCRG 314 (396)
Q Consensus 252 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~ 314 (396)
...++.-|...|+.++|.+.++++..... ....+...+..++-+.++ .+....++..+...|
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f-~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~ 73 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSS 73 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCcc-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCC
Confidence 45667777777888888888877642110 011222333333433322 244556666665543
No 297
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=52.82 E-value=12 Score=29.26 Aligned_cols=25 Identities=12% Similarity=-0.005 Sum_probs=14.8
Q ss_pred HHHHHcCCchHHHHHHHHHhccchh
Q 016027 362 DEFKKRGMTALAQKLCNVMSSVPRS 386 (396)
Q Consensus 362 ~~~~~~g~~~~A~~~~~~~~~~~~~ 386 (396)
...++.|+.+-+..++++-...+.+
T Consensus 230 ~~A~~~g~~~~v~~Ll~~g~~~~~~ 254 (260)
T 3jxi_A 230 MMAAKTGKIGIFQHIIRREIADAAA 254 (260)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHcCCHHHHHHHHHhCCCcccc
Confidence 3345678877777777765444333
No 298
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=52.37 E-value=17 Score=27.06 Aligned_cols=21 Identities=19% Similarity=0.268 Sum_probs=10.7
Q ss_pred HHHHHhcCChhHHHHHHHHHH
Q 016027 116 LNGWFRSKNVKDAERFWLEMR 136 (396)
Q Consensus 116 ~~~~~~~~~~~~a~~~~~~~~ 136 (396)
+..|.+.|.+++|.+++++..
T Consensus 124 V~VCiekg~Fk~A~eiLkr~f 144 (211)
T 3bqo_A 124 IAVCMENGNFKEAEEVFERIF 144 (211)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC
T ss_pred HHHHHHccchHHHHHHHHHHh
Confidence 334555555555555555543
No 299
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=52.09 E-value=94 Score=25.23 Aligned_cols=25 Identities=4% Similarity=0.325 Sum_probs=18.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH
Q 016027 112 YNILLNGWFRSKNVKDAERFWLEMR 136 (396)
Q Consensus 112 ~~~l~~~~~~~~~~~~a~~~~~~~~ 136 (396)
...++.-|...|+.++|...++++.
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~ 30 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLN 30 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 4567777888888888888887764
No 300
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=51.79 E-value=54 Score=22.61 Aligned_cols=34 Identities=18% Similarity=0.132 Sum_probs=14.7
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 016027 159 RVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEA 192 (396)
Q Consensus 159 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 192 (396)
..-.|.++++.+.+.+...+..|...-+..+...
T Consensus 33 ~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~ 66 (136)
T 1mzb_A 33 RHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAA 66 (136)
T ss_dssp CSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHC
Confidence 3444555555555444333444433333333333
No 301
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=51.15 E-value=60 Score=22.71 Aligned_cols=35 Identities=9% Similarity=0.061 Sum_probs=16.4
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 016027 335 FDEASAEFEDMIRRGLVPHYLTFKRLNDEFKKRGM 369 (396)
Q Consensus 335 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 369 (396)
.-.|.++++.+.+.+...+..|...-++.+...|-
T Consensus 33 h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 33 HATPDDILGEVRKTASGINISTVYRTLELLEELGL 67 (145)
T ss_dssp SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCc
Confidence 44555555555544434444444444444444443
No 302
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=50.08 E-value=51 Score=23.40 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=10.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHH
Q 016027 114 ILLNGWFRSKNVKDAERFWLEM 135 (396)
Q Consensus 114 ~l~~~~~~~~~~~~a~~~~~~~ 135 (396)
.++.-|...++.++|...++++
T Consensus 14 ~lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 14 MLLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHh
Confidence 3444444445555555544444
No 303
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=50.03 E-value=63 Score=22.59 Aligned_cols=43 Identities=12% Similarity=0.061 Sum_probs=20.3
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 016027 327 HLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFKKRGM 369 (396)
Q Consensus 327 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 369 (396)
..+...+..-.|.++++.+.+.+...+..|....++.+...|-
T Consensus 29 ~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 29 EYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 3333344444555555555544434444444444445544443
No 304
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=49.82 E-value=61 Score=22.84 Aligned_cols=58 Identities=16% Similarity=0.142 Sum_probs=25.5
Q ss_pred HHhCCCCCChhHHHHHHHHHHccC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 016027 135 MRKENVTPNVVTYGTLVEGYCRLR-RVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAG 193 (396)
Q Consensus 135 ~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 193 (396)
+.+.|.+++..= ..++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 8 l~~~g~r~T~qR-~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 8 LKDAGLKVTLPR-LKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp HHHTTCCCCHHH-HHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 344454433322 22333333333 34445555555555544444444444444444444
No 305
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=49.82 E-value=57 Score=23.39 Aligned_cols=55 Identities=11% Similarity=0.052 Sum_probs=25.2
Q ss_pred CCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHcC
Q 016027 138 ENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKE--GIEPNAIVYNTVIDGLVEAG 193 (396)
Q Consensus 138 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~ 193 (396)
.|.+++. .-..++..+...+..-.|.++++.+.+. +...+..|...-+..+...|
T Consensus 27 ~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~G 83 (162)
T 4ets_A 27 GGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAE 83 (162)
T ss_dssp HTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTT
T ss_pred cCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC
Confidence 3444332 2233444444444455555555555554 43444444444444444444
No 306
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=49.76 E-value=69 Score=23.00 Aligned_cols=49 Identities=12% Similarity=-0.078 Sum_probs=26.4
Q ss_pred cCChhHHHHHHHHHHHCCCCC--CHHHHHHHHH-H-----HHHcCCchHHHHHHHHH
Q 016027 332 MYKFDEASAEFEDMIRRGLVP--HYLTFKRLND-E-----FKKRGMTALAQKLCNVM 380 (396)
Q Consensus 332 ~~~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~-~-----~~~~g~~~~A~~~~~~~ 380 (396)
.|++-+|.++|+..=.....+ ....|..||+ . ..+.|+...|.+++.+.
T Consensus 45 ~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~A 101 (161)
T 2ijq_A 45 SGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTS 101 (161)
T ss_dssp TTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 366666666666664432233 3344555555 1 13456666666666664
No 307
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=49.27 E-value=84 Score=23.83 Aligned_cols=21 Identities=19% Similarity=0.101 Sum_probs=11.2
Q ss_pred HHHHHcCChHHHHHHHHHHhh
Q 016027 80 DSLCKQGRVKAASEYFHKRKE 100 (396)
Q Consensus 80 ~~~~~~~~~~~A~~~~~~~~~ 100 (396)
..|.+.|.+++|.+++++...
T Consensus 122 ~VCiek~~f~kA~eiLkr~~~ 142 (235)
T 3bu8_A 122 IICIKNKEFEKASKILKKHMS 142 (235)
T ss_dssp HHHHHTTCHHHHHHHHHHHST
T ss_pred HHHHHhcchHHHHHHHHHHhc
Confidence 344555555555555555544
No 308
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=49.07 E-value=1.6e+02 Score=26.89 Aligned_cols=314 Identities=8% Similarity=-0.043 Sum_probs=157.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHH
Q 016027 38 ILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLN 117 (396)
Q Consensus 38 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~ 117 (396)
.-...+.+.+++...+.++.. .|.+...-.....+....|+..+|......+=... . ........++.
T Consensus 77 ~~l~~l~~~~~w~~~l~~~~~---------~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~--~~p~~c~~l~~ 144 (618)
T 1qsa_A 77 RFVNELARREDWRGLLAFSPE---------KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-K--SQPNACDKLFS 144 (618)
T ss_dssp HHHHHHHHTTCHHHHHHHCCS---------CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-S--CCCTHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHhccC---------CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-C--CCcHHHHHHHH
Confidence 445566677777766654331 26677777888888889999877777666654321 2 23446677777
Q ss_pred HHHhcCChhH--HHHHHHHHHhCCCCCChhHHHHHHHHH-----------Hc-cCCHHHHHHHHHHHHHcCCCCCHHH--
Q 016027 118 GWFRSKNVKD--AERFWLEMRKENVTPNVVTYGTLVEGY-----------CR-LRRVDRAIRLVKEMRKEGIEPNAIV-- 181 (396)
Q Consensus 118 ~~~~~~~~~~--a~~~~~~~~~~~~~~~~~~~~~l~~~~-----------~~-~~~~~~a~~~~~~~~~~~~~~~~~~-- 181 (396)
.+.+.|.+.. ...=++.+...| +......++... .. ..+...+..... . ..++...
T Consensus 145 ~~~~~g~lt~~~~~~R~~~al~~~---~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~~~~~~---~--~~~~~~~~~ 216 (618)
T 1qsa_A 145 VWRASGKQDPLAYLERIRLAMKAG---NTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFAR---T--TGATDFTRQ 216 (618)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHTT---CHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHH---H--SCCCHHHHH
T ss_pred HHHHCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhHHHHHh---c--cCCChhhHH
Confidence 7776665433 222233333332 111111111111 00 001111111110 0 1222221
Q ss_pred -HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHH----HHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHH
Q 016027 182 -YNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYT----SLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFF 256 (396)
Q Consensus 182 -~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 256 (396)
+...+.-+.+ .+.+.|...+........ .+..... .++......+...++...+....... .+.......+
T Consensus 217 ~~~~~~~rlar-~d~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~ 292 (618)
T 1qsa_A 217 MAAVAFASVAR-QDAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRV 292 (618)
T ss_dssp HHHHHHHHHHH-HCHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHH
T ss_pred HHHHHHHHHHh-cCHHHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHH
Confidence 1111222222 367788888877754332 2322222 22222333342444555555544432 2333344444
Q ss_pred HHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH------------cCCCC-------
Q 016027 257 RYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKC------------RGCDI------- 317 (396)
Q Consensus 257 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------------~~~~~------- 317 (396)
....+.|+++.|...|..+..... ........+.+++...|+.++|..+|+.+.. .|.++
T Consensus 293 r~Alr~~d~~~a~~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~~fYg~lAa~~Lg~~~~~~~~~~ 371 (618)
T 1qsa_A 293 RMALGTGDRRGLNTWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKA 371 (618)
T ss_dssp HHHHHHTCHHHHHHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCC
T ss_pred HHHHHCCCHHHHHHHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCCChHHHHHHHHcCCCCCCCCCCC
Confidence 445566888888888877654321 1333445566677778888888887777643 12110
Q ss_pred Ch---h-----hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHH
Q 016027 318 DL---D-----TSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFKKRGMTALAQKLCNV 379 (396)
Q Consensus 318 ~~---~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 379 (396)
+. . .-..-+..+...|....|...+..+.+. .+......+.......|..+.++....+
T Consensus 372 ~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~a~~~~~~~~~v~~~~~ 438 (618)
T 1qsa_A 372 PQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQATIA 438 (618)
T ss_dssp CSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 00 0 0112244566778888888888877653 2333333444555667777777655544
No 309
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=48.75 E-value=1.6e+02 Score=27.02 Aligned_cols=322 Identities=7% Similarity=-0.025 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCC--------------hHHHHHHH--------
Q 016027 38 ILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGR--------------VKAASEYF-------- 95 (396)
Q Consensus 38 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------------~~~A~~~~-------- 95 (396)
.++-.|.+.|.+++|.++.++....- ......|...+..|+...+ +....+.-
T Consensus 157 a~IyY~LR~G~~~~A~e~~~~~~~~~-----~~~d~~F~~~l~~~~~s~~~~L~~~~~~~l~~ey~~~~r~~~~~DpyK~ 231 (661)
T 2qx5_A 157 ALIFYLLRAGLIKEALQVLVENKANI-----KKVEQSFLTYFKAYASSKDHGLPVEYSTKLHTEYNQHIKSSLDGDPYRL 231 (661)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHTGGGC----------CHHHHHHHC------------------------------CHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhH-----hhhhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHH
Q ss_pred ---------HHHhhccCCCCCChHHHHHHHHHHHhcC-----------ChhHHHHHHHHHHhCCCCCChhHHHHHHHHHH
Q 016027 96 ---------HKRKELDQSWAPTVRVYNILLNGWFRSK-----------NVKDAERFWLEMRKENVTPNVVTYGTLVEGYC 155 (396)
Q Consensus 96 ---------~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 155 (396)
+-.....|.+..++.-|--+=-.+.+.+ -+.+....+.+.-+.-+.+ .....+.
T Consensus 232 AvY~Iig~cD~~~~~~~~v~~siED~LWl~L~lvre~~~~~~~~~e~ytL~~LQ~~I~~yGe~~F~~------lYf~vLl 305 (661)
T 2qx5_A 232 AVYKLIGRCDLSRKNIPAVTLSIEDWLWMHLMLIKEKDAENDPVYERYSLEDFQNIIISYGPSRFSN------YYLQTLL 305 (661)
T ss_dssp HHHHHHHTCCGGGCCCGGGCCSHHHHHHHHHHTCCC----------CCCHHHHHHHHHHHCGGGGTT------CHHHHHH
T ss_pred HHHHHHhcccccccchHHHhccHHHHHHHHHHhccCCCcccccccccccHHHHHHHHHHhhhhhhhh------HHHHHHH
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhc---CChHH
Q 016027 156 RLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKA---GDLEG 232 (396)
Q Consensus 156 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~ 232 (396)
-.|+++.|++++-+. ...+..++...+..+.-.+- -+.+..........-+..|+..|.+. .++..
T Consensus 306 LtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~-------~~~lls~~~~~~~lN~arLI~~Yt~~F~~td~~~ 374 (661)
T 2qx5_A 306 LSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKI-------DSSTRLTKKPKRDIRFANILANYTKSFRYSDPRV 374 (661)
T ss_dssp HTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC------------------------CHHHHHHHHHTTTTTTCHHH
T ss_pred HHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCccC-------CCcccccCCCcccccHHHHHHHHHHHhhcCCHHH
Q ss_pred HHHHHHHHHHCC-CCCChhhHHHHHHHHhccCCHHHHH-----------HHHHHHHHCCCCCCh------hhHHHHHHHH
Q 016027 233 ASKILKMMISRG-FLPSPTTYNYFFRYFSKFGKVEDAM-----------NLYRKMIESGYTPDR------LTYHILLKIL 294 (396)
Q Consensus 233 a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~-----------~~~~~~~~~~~~~~~------~~~~~l~~~~ 294 (396)
|.+.|-.+...+ ..-....+..+-......+.++.-+ -++++.... +..+. ........-+
T Consensus 375 Al~Y~~li~l~~g~~~~~~~~~~l~eLvletr~f~~LLG~i~~dG~r~~G~i~~~~~l-i~l~d~~~~~~~i~~~aA~~a 453 (661)
T 2qx5_A 375 AVEYLVLITLNEGPTDVELCHEALRELVLETKEFTVLLGKIGRDGARIPGVIEERQPL-LHVRDEKEFLHTITEQAARRA 453 (661)
T ss_dssp HHHHHHGGGGSCCHHHHHHHHHHHHHHHHHHCCHHHHHCEECTTSCEECCHHHHTCGG-GTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCchHHHHHHHHHHHHHHhcccHHHHcCCcCCCCCcCcchHHHhhcc-cccccHHHHHHHHHHHHHHHH
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC---------------hhHHHHHHHHHHHCC----------
Q 016027 295 CKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYK---------------FDEASAEFEDMIRRG---------- 349 (396)
Q Consensus 295 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------------~~~a~~~~~~~~~~~---------- 349 (396)
...|+++.|..+|..+.+. .--....+.++.-....-. +...-.-+.++...+
T Consensus 454 e~~G~~~dAi~LY~La~~~--d~vl~lln~~Ls~~l~~~~~~~~~~~~~~~~~~~l~~la~~i~~~y~~~~~~~~~~~~~ 531 (661)
T 2qx5_A 454 DEDGRIYDSILLYQLAEEY--DIVITLVNSLLSDTLSASDLDQPLVGPDDNSETNPVLLARRMASIYFDNAGISRQIHVK 531 (661)
T ss_dssp HHTTCHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHHSCTTSCSSCSSCCTTTCHHHHHHHHHHHHTTCHHHHTTSCHH
T ss_pred HHCCCHHHHHHHHHHhcCH--HHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHhcCchhhhhccHH
Q ss_pred CCCCHHHHHHHHHHH--HHcCCchHHHHHHHHHhccc
Q 016027 350 LVPHYLTFKRLNDEF--KKRGMTALAQKLCNVMSSVP 384 (396)
Q Consensus 350 ~~p~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~ 384 (396)
...+...+..++..+ .+.|+++.|++.++++.-.|
T Consensus 532 ~~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~L~llP 568 (661)
T 2qx5_A 532 NKEICMLLLNISSIRELYFNKQWQETLSQMELLDLLP 568 (661)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTSCSC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCC
No 310
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=48.49 E-value=67 Score=23.43 Aligned_cols=12 Identities=8% Similarity=0.310 Sum_probs=5.0
Q ss_pred hcCChhHHHHHH
Q 016027 121 RSKNVKDAERFW 132 (396)
Q Consensus 121 ~~~~~~~a~~~~ 132 (396)
..|+.+.+..++
T Consensus 14 ~~g~~~~v~~ll 25 (201)
T 3hra_A 14 NQRDTKKVKEIL 25 (201)
T ss_dssp HTTCHHHHHHHH
T ss_pred HhccHHHHHHHH
Confidence 344444444333
No 311
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=48.47 E-value=69 Score=22.58 Aligned_cols=46 Identities=9% Similarity=0.073 Sum_probs=22.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCc
Q 016027 325 LIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFKKRGMT 370 (396)
Q Consensus 325 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 370 (396)
++..+...+..-.|.++++.+.+.+...+..|....+..+...|-.
T Consensus 32 IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 32 VVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 3344444444555555555555544444444544444555554443
No 312
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=47.87 E-value=70 Score=25.35 Aligned_cols=185 Identities=11% Similarity=0.049 Sum_probs=83.9
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHHcC
Q 016027 116 LNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIV--YNTVIDGLVEAG 193 (396)
Q Consensus 116 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~ 193 (396)
+...+..|+.+-+..++ +.|..++...-.+.+...+..|+.+-+ +.+.+.|..++... -...+...+..|
T Consensus 35 L~~A~~~g~~~~v~~Ll----~~g~~~~~~~g~t~L~~A~~~g~~~~v----~~Ll~~ga~~~~~d~~g~t~L~~A~~~g 106 (285)
T 3kea_A 35 SYYAIADNNVRLVCTLL----NAGALKNLLENEFPLHQAATLEDTKIV----KILLFSGLDDSQFDDKGNTALYYAVDSG 106 (285)
T ss_dssp HHHHHHTTCHHHHHHHH----HTTGGGSCCTTCCHHHHHTTSSSCHHH----HHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHH----hCCCCCCCCCCCCHHHHHHHcCCHHHH----HHHHHCCCCCCCcCCCCCcHHHHHHHcC
Confidence 44455677776555444 445444433222344445566776544 44455565443221 112233445667
Q ss_pred CHHHHHHHHHHHHhcCCCCch---hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChh-hHHHHHHHHhccCCHHHHH
Q 016027 194 RFEEVSGMMERFLVCEPGPTM---VTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPT-TYNYFFRYFSKFGKVEDAM 269 (396)
Q Consensus 194 ~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~ 269 (396)
+.+-+.-+++. |..++. .-+.+.+...+..|+.+- ++.+.+.|..+... .-...+...+..|+.+-+.
T Consensus 107 ~~~~v~~Ll~~----ga~~~~~~~~g~~t~L~~A~~~~~~~~----v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~ 178 (285)
T 3kea_A 107 NMQTVKLFVKK----NWRLMFYGKTGWKTSFYHAVMLNDVSI----VSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMI 178 (285)
T ss_dssp CHHHHHHHHHH----CGGGGGCSSSGGGSHHHHHHHTTCHHH----HHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHH
T ss_pred CHHHHHHHHhc----CCCCCccCCCCCCCHHHHHHHcCCHHH----HHHHHhCCCccccccCCccHHHHHHHcChHHHHH
Confidence 76655544443 333222 121234444555666543 34444444332111 2233344445667776666
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhh
Q 016027 270 NLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDT 321 (396)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 321 (396)
-+++.-...+.. +....+..+...+..|+. ++.+.+.+.|..++...
T Consensus 179 ~Ll~~gad~n~~-~~~g~t~~L~~A~~~~~~----~~v~~Ll~~gad~~~~~ 225 (285)
T 3kea_A 179 LLLDYMTSTNTN-NSLLFIPDIKLAIDNKDI----EMLQALFKYDINIYSAN 225 (285)
T ss_dssp HHHHHHHHTCTT-CCCBCCTTHHHHHHHTCH----HHHHHHTTSCBCSTTTT
T ss_pred HHHHcCCCCCcc-cCCCCChHHHHHHHcCCH----HHHHHHHHcCCCCCCCC
Confidence 555553332221 222222222333445554 34445556666655543
No 313
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=47.70 E-value=66 Score=22.15 Aligned_cols=36 Identities=19% Similarity=0.060 Sum_probs=17.6
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 016027 299 KLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYK 334 (396)
Q Consensus 299 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 334 (396)
..-.|.++++.+.+.++..+..|...-+..+...|-
T Consensus 33 ~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 33 RHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp CSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCc
Confidence 344555555555555444444444444444444443
No 314
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=47.64 E-value=86 Score=23.47 Aligned_cols=17 Identities=24% Similarity=0.456 Sum_probs=9.1
Q ss_pred CCHHHHHHHHHHHHHcC
Q 016027 158 RRVDRAIRLVKEMRKEG 174 (396)
Q Consensus 158 ~~~~~a~~~~~~~~~~~ 174 (396)
.+.+.|+-++-+|++.|
T Consensus 28 SDpDAAly~LaRml~~G 44 (204)
T 2r9g_A 28 SDVDAALHYLARLVEAG 44 (204)
T ss_dssp TCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHcC
Confidence 45555555555555555
No 315
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=47.04 E-value=50 Score=23.11 Aligned_cols=33 Identities=18% Similarity=0.099 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 016027 160 VDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEA 192 (396)
Q Consensus 160 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 192 (396)
.-.|.++++.+.+.+...+..|...-+..+...
T Consensus 33 h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~ 65 (145)
T 3eyy_A 33 HATPDDILGEVRKTASGINISTVYRTLELLEEL 65 (145)
T ss_dssp SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHC
Confidence 334555555554444333444433333333333
No 316
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=47.03 E-value=73 Score=22.45 Aligned_cols=36 Identities=19% Similarity=0.278 Sum_probs=15.5
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 016027 334 KFDEASAEFEDMIRRGLVPHYLTFKRLNDEFKKRGM 369 (396)
Q Consensus 334 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 369 (396)
..-.|.++++.+.+.+...+..|....+..+...|-
T Consensus 32 ~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 67 (150)
T 2w57_A 32 QHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGI 67 (150)
T ss_dssp SSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred CCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCc
Confidence 344444444444444333344444344444444443
No 317
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=46.68 E-value=1.2e+02 Score=24.70 Aligned_cols=59 Identities=7% Similarity=0.077 Sum_probs=36.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCC--hhHHHHHHHHHHh
Q 016027 75 FEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKN--VKDAERFWLEMRK 137 (396)
Q Consensus 75 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~ 137 (396)
...++.-|...|+.++|...++.+... ...| .....++......++ -+.+-.++..+..
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~p--~~~~--~~v~~~i~~aldr~~~erE~~s~LLs~L~~ 66 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNLG--EMKS--GVPVLAVSLALEGKASHREMTSKLLSDLCG 66 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCG--GGGG--GHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCc--chHH--HHHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 567889999999999999999987532 2222 233344444444443 2344556666653
No 318
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=45.46 E-value=72 Score=23.26 Aligned_cols=15 Identities=7% Similarity=0.060 Sum_probs=7.9
Q ss_pred HHHHHHHHHCCCCCC
Q 016027 339 SAEFEDMIRRGLVPH 353 (396)
Q Consensus 339 ~~~~~~~~~~~~~p~ 353 (396)
.++.+.+++.|..++
T Consensus 158 ~~~v~~Ll~~ga~~~ 172 (201)
T 3hra_A 158 QDIVKLLMENGADQS 172 (201)
T ss_dssp HHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHCCCCCC
Confidence 455555555554443
No 319
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=45.31 E-value=47 Score=22.71 Aligned_cols=45 Identities=9% Similarity=0.050 Sum_probs=24.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccC
Q 016027 114 ILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLR 158 (396)
Q Consensus 114 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 158 (396)
.++..+...+..-.|.++++.+.+.+...+..|....++.+...|
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 344444455556666666666666555555555555555555444
No 320
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=44.67 E-value=2.3e+02 Score=27.53 Aligned_cols=49 Identities=14% Similarity=0.138 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc----hhhHHHHHHHHHhcC
Q 016027 180 IVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPT----MVTYTSLVKGYCKAG 228 (396)
Q Consensus 180 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~ 228 (396)
..|..++..+.+.+.++.+.++-+.+++.-...+ ...|+.+.++.+..|
T Consensus 898 ~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 898 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 4788899999999999999999988887532222 245666777666544
No 321
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=42.44 E-value=43 Score=23.26 Aligned_cols=45 Identities=4% Similarity=0.031 Sum_probs=21.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccC
Q 016027 114 ILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLR 158 (396)
Q Consensus 114 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 158 (396)
.++..+...++.-.|.++++.+.+.+...+..|....+..+...|
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 344444444445555555555555544444444444444444433
No 322
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=42.05 E-value=1.7e+02 Score=25.41 Aligned_cols=109 Identities=11% Similarity=0.007 Sum_probs=65.3
Q ss_pred cCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCCh
Q 016027 46 AGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNV 125 (396)
Q Consensus 46 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 125 (396)
..+.+-|.++-.+. ++|--...|..-...+...|++++|.++--.... +.-.+..+.+.+-..-...|+.
T Consensus 342 l~n~~lA~~lA~R~-------~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~---giLRt~~Ti~rFk~vp~~pgq~ 411 (494)
T 1bpo_A 342 LQNPDLALRMAVRN-------NLAGAEELFARKFNALFAQGNYSEAAKVAANAPK---GILRTPDTIRRFQSVPAQPGQT 411 (494)
T ss_dssp TCCHHHHHHHHHHT-------TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG---GSSCSHHHHHHHTTSCCCTTSC
T ss_pred cCCHHHHHHHHHhc-------CCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc---ccccCHHHHHHHhcCCCCCCCC
Confidence 46666666555433 4466666677777888888888888887665544 4455666666555544445666
Q ss_pred hHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHH
Q 016027 126 KDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIR 165 (396)
Q Consensus 126 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 165 (396)
.-.+.+|..+.+.| ..+..--.-+++.-...|+.+-..+
T Consensus 412 splL~YF~~Ll~~g-~Ln~~ESlEl~r~vL~q~r~~llek 450 (494)
T 1bpo_A 412 SPLLQYFGILLDQG-QLNKYESLELCRPVLQQGRKQLLEK 450 (494)
T ss_dssp CHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHhccC-ccchHHhhHHhHHHHhccHHHHHHH
Confidence 66667777666665 2344333334444444555444333
No 323
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=41.47 E-value=60 Score=22.52 Aligned_cols=40 Identities=18% Similarity=0.174 Sum_probs=16.9
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 016027 329 LCRMYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFKKRG 368 (396)
Q Consensus 329 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 368 (396)
+...++.-.|.++++.+.+.+...+..|....++.+.+.|
T Consensus 23 L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 23 LQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp HTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 3333334444444444444433334444334444444444
No 324
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=41.13 E-value=66 Score=21.95 Aligned_cols=37 Identities=22% Similarity=0.254 Sum_probs=15.5
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 016027 297 EDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMY 333 (396)
Q Consensus 297 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 333 (396)
.+..-.|.++++.+.+.++..+..|.-..+..+...|
T Consensus 23 ~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 23 LDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp CCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred CCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 3334444444444444433334433333334444433
No 325
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=41.01 E-value=97 Score=22.18 Aligned_cols=43 Identities=19% Similarity=0.126 Sum_probs=18.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc--CCCCChhhHHHHHHHHHhcCC
Q 016027 292 KILCKEDKLDLAIQVSKEMKCR--GCDIDLDTSTMLIHLLCRMYK 334 (396)
Q Consensus 292 ~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~ 334 (396)
..+...+..-.|.++++.+.+. ++..+..|.-.-+..+...|-
T Consensus 40 ~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 40 KTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 3344444444455555555444 333344443333444444443
No 326
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=40.59 E-value=27 Score=19.43 Aligned_cols=37 Identities=16% Similarity=0.235 Sum_probs=20.7
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCC--chHHHHHHHHHh
Q 016027 340 AEFEDMIRRGLVPHYLTFKRLNDEFKKRGM--TALAQKLCNVMS 381 (396)
Q Consensus 340 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~ 381 (396)
+.++.+++.|+.++ ....++.+.|+ ++.|++++.+|.
T Consensus 11 qmlq~L~eMGFd~e-----rae~Alk~Tg~~Gle~AmewL~k~~ 49 (54)
T 2cos_A 11 QMLQELVNAGCDQE-----MAGRALKQTGSRSIEAALEYISKMS 49 (54)
T ss_dssp HHHHHHHHHHCCHH-----HHHHHHHHHTSCCHHHHHHHHHHHS
T ss_pred HHHHHHHHcCCCHH-----HHHHHHHHhCcccHHHHHHHHHHhc
Confidence 34555555565442 22335555565 777777777763
No 327
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=39.44 E-value=28 Score=19.96 Aligned_cols=29 Identities=21% Similarity=0.384 Sum_probs=14.4
Q ss_pred hHHHHHHHHHHhCCCCCChhHHHHHHHHH
Q 016027 126 KDAERFWLEMRKENVTPNVVTYGTLVEGY 154 (396)
Q Consensus 126 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 154 (396)
++|.+.|.+|++..-.++..+|...++..
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 45555565555442223444555555554
No 328
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=38.80 E-value=1.2e+02 Score=25.08 Aligned_cols=25 Identities=8% Similarity=0.149 Sum_probs=18.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHh
Q 016027 75 FEILLDSLCKQGRVKAASEYFHKRK 99 (396)
Q Consensus 75 ~~~l~~~~~~~~~~~~A~~~~~~~~ 99 (396)
...++.-|...|+.++|...++++.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 4567777777788888877777764
No 329
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=36.01 E-value=73 Score=19.32 Aligned_cols=61 Identities=18% Similarity=0.254 Sum_probs=37.0
Q ss_pred HHHcCCCCChhhHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCch
Q 016027 310 MKCRGCDIDLDTSTMLIHLLCRMY-KFDEASAEFEDMIRRGLVPHYLTFKRLNDEFKKRGMTA 371 (396)
Q Consensus 310 ~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 371 (396)
+.+.|...+..- ..++..+...+ ..-.+.++++.+.+.+...+..|....+..+.+.|-..
T Consensus 8 l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~ 69 (83)
T 2fu4_A 8 LKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVT 69 (83)
T ss_dssp HHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeE
Confidence 445566655433 34445555544 55667777777776655556667767777777766543
No 330
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=35.99 E-value=2.2e+02 Score=24.82 Aligned_cols=143 Identities=10% Similarity=-0.028 Sum_probs=84.7
Q ss_pred cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 016027 227 AGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQV 306 (396)
Q Consensus 227 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 306 (396)
..+.+-|.++.. +.|++--...|..-...+...|++++|.++-..... |+--++.|.+.+-.+=...|...-.+.+
T Consensus 342 l~n~~lA~~lA~---R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~splL~Y 417 (494)
T 1bpo_A 342 LQNPDLALRMAV---RNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQY 417 (494)
T ss_dssp TCCHHHHHHHHH---HTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHH
T ss_pred cCCHHHHHHHHH---hcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCCHHHHH
Confidence 355665555443 344444455566667777788888888877665433 3334667776665555556667777788
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhc
Q 016027 307 SKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFKKRGMTALAQKLCNVMSS 382 (396)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 382 (396)
|..+.+.| ..+..---.+++.-...|+.+-..+++. +..+..+...-..+ +..+..-|..+|.+...
T Consensus 418 F~~Ll~~g-~Ln~~ESlEl~r~vL~q~r~~llekWl~---e~KL~~SEeLGDlv-----k~~d~~LAl~IY~~a~~ 484 (494)
T 1bpo_A 418 FGILLDQG-QLNKYESLELCRPVLQQGRKQLLEKWLK---EDKLECSEELGDLV-----KSVDPTLALSVYLRANV 484 (494)
T ss_dssp HHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHH---HTCSCCCHHHHHHH-----HHHCSHHHHHHHHHHCC
T ss_pred HHHHhccC-ccchHHhhHHhHHHHhccHHHHHHHHHh---cCCccccHHhHhhh-----hhcCHHHHHHHHHHcCC
Confidence 88877775 3355444555666666666555544433 23445444332222 44467778777776544
No 331
>3vu7_H DNA repair protein REV1; DNA replication, translesion DNA synthesis, damage tolerance, DNA repair, replication; HET: DNA; 2.80A {Homo sapiens} PDB: 2lsj_A*
Probab=35.63 E-value=80 Score=21.48 Aligned_cols=47 Identities=13% Similarity=-0.044 Sum_probs=23.0
Q ss_pred HHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 016027 15 WCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANN 61 (396)
Q Consensus 15 ~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 61 (396)
..++.+.+.....|...+...+...+..+.+.++.+++..++..+..
T Consensus 42 K~lL~~Wv~s~~~P~~~DV~~l~~yL~~lVeek~Lek~~~vlk~l~r 88 (124)
T 3vu7_H 42 KTLLREWITTISDPMEEDILQVVKYCTDLIEEKDLEKLDLVIKYMKR 88 (124)
T ss_dssp HHHHHHHHHHHCSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHH
Confidence 33333333333344444445555555555566666666555554443
No 332
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=34.89 E-value=86 Score=23.54 Aligned_cols=12 Identities=0% Similarity=-0.247 Sum_probs=5.4
Q ss_pred HHhcCChhHHHH
Q 016027 119 WFRSKNVKDAER 130 (396)
Q Consensus 119 ~~~~~~~~~a~~ 130 (396)
.++.|+.+.+..
T Consensus 16 A~~~g~~~~~~~ 27 (240)
T 3eu9_A 16 ATQYGIYERCRE 27 (240)
T ss_dssp HHHTTCHHHHHH
T ss_pred HHHcCChHHHHH
Confidence 344555444433
No 333
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=34.81 E-value=1.7e+02 Score=23.09 Aligned_cols=155 Identities=10% Similarity=-0.009 Sum_probs=68.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCChh---HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHH---HHHHHHH
Q 016027 114 ILLNGWFRSKNVKDAERFWLEMRKENVTPNVV---TYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAI---VYNTVID 187 (396)
Q Consensus 114 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~ 187 (396)
+.+...+..|+.+-+..+ .+.|..++.. -.+.+ ...+..|+.+-+..+ .+.|..++.. -+...+.
T Consensus 64 t~L~~A~~~g~~~~v~~L----l~~ga~~~~~d~~g~t~L-~~A~~~g~~~~v~~L----l~~ga~~~~~~~~g~~t~L~ 134 (285)
T 3kea_A 64 FPLHQAATLEDTKIVKIL----LFSGLDDSQFDDKGNTAL-YYAVDSGNMQTVKLF----VKKNWRLMFYGKTGWKTSFY 134 (285)
T ss_dssp CHHHHHTTSSSCHHHHHH----HHTTCCTTCCCTTSCCHH-HHHHHTTCHHHHHHH----HHHCGGGGGCSSSGGGSHHH
T ss_pred CHHHHHHHcCCHHHHHHH----HHCCCCCCCcCCCCCcHH-HHHHHcCCHHHHHHH----HhcCCCCCccCCCCCCCHHH
Confidence 345555666766544433 3445444322 22222 333455665544333 3344333321 1123344
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCC-chhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHH
Q 016027 188 GLVEAGRFEEVSGMMERFLVCEPGP-TMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVE 266 (396)
Q Consensus 188 ~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 266 (396)
..+..|+.+-+ +.+.+.|..+ +...-.+.+...+..|+.+-+.-+++.-...... +..-.+..+...+..|+.
T Consensus 135 ~A~~~~~~~~v----~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~-~~~g~t~~L~~A~~~~~~- 208 (285)
T 3kea_A 135 HAVMLNDVSIV----SYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTN-NSLLFIPDIKLAIDNKDI- 208 (285)
T ss_dssp HHHHTTCHHHH----HHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCTT-CCCBCCTTHHHHHHHTCH-
T ss_pred HHHHcCCHHHH----HHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHcCCCCCcc-cCCCCChHHHHHHHcCCH-
Confidence 45556665543 3334434332 1112233444555677777666666554443322 222222222223334553
Q ss_pred HHHHHHHHHHHCCCCCChhh
Q 016027 267 DAMNLYRKMIESGYTPDRLT 286 (396)
Q Consensus 267 ~a~~~~~~~~~~~~~~~~~~ 286 (396)
++.+.+.+.|..++...
T Consensus 209 ---~~v~~Ll~~gad~~~~~ 225 (285)
T 3kea_A 209 ---EMLQALFKYDINIYSAN 225 (285)
T ss_dssp ---HHHHHHTTSCBCSTTTT
T ss_pred ---HHHHHHHHcCCCCCCCC
Confidence 34444555666655543
No 334
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=34.68 E-value=1.4e+02 Score=22.26 Aligned_cols=17 Identities=18% Similarity=0.200 Sum_probs=7.7
Q ss_pred CCHHHHHHHHHHHHHcC
Q 016027 158 RRVDRAIRLVKEMRKEG 174 (396)
Q Consensus 158 ~~~~~a~~~~~~~~~~~ 174 (396)
.+.+.|+-++-+|++.|
T Consensus 21 SDpDAAly~LaRMl~~G 37 (201)
T 3bge_A 21 SAPDAALYWYARILTAG 37 (201)
T ss_dssp TCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHcC
Confidence 34444444444444444
No 335
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=34.51 E-value=1.5e+02 Score=22.42 Aligned_cols=20 Identities=20% Similarity=0.380 Sum_probs=9.4
Q ss_pred CCHHHHHHHHHHHHHcCCCC
Q 016027 158 RRVDRAIRLVKEMRKEGIEP 177 (396)
Q Consensus 158 ~~~~~a~~~~~~~~~~~~~~ 177 (396)
++++.|+-++-+|++.|-.|
T Consensus 49 SDpDAALywLaRMl~~GEDp 68 (213)
T 3ctd_A 49 SDPDATLYWLANMVEAGEDP 68 (213)
T ss_dssp TCHHHHHHHHHHHHHTTCCH
T ss_pred CCHHHHHHHHHHHHHcCCCH
Confidence 44444555555554444333
No 336
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=33.08 E-value=1.5e+02 Score=22.18 Aligned_cols=26 Identities=8% Similarity=-0.079 Sum_probs=14.2
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCC
Q 016027 117 NGWFRSKNVKDAERFWLEMRKENVTP 142 (396)
Q Consensus 117 ~~~~~~~~~~~a~~~~~~~~~~~~~~ 142 (396)
...+..|+.+.+..+++.+.+.|..+
T Consensus 14 ~~A~~~g~~~~v~~Ll~~~~~~~~~~ 39 (241)
T 1k1a_A 14 HIAVVQGNLPAVHRLVNLFQQGGREL 39 (241)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 33455666666666666555544333
No 337
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=31.78 E-value=41 Score=22.70 Aligned_cols=51 Identities=20% Similarity=0.149 Sum_probs=30.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHH
Q 016027 112 YNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIR 165 (396)
Q Consensus 112 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 165 (396)
|...|...+..++.+-|.++++-.++.| +...|.+.+-.|...=+++-+++
T Consensus 35 ykDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVLE 85 (125)
T 3qil_A 35 YKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLE 85 (125)
T ss_dssp SSHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHHH
Confidence 4445555566666666666666666554 55666666666666555555544
No 338
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=31.64 E-value=2.5e+02 Score=24.22 Aligned_cols=47 Identities=6% Similarity=0.036 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHc--------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 016027 160 VDRAIRLVKEMRKE--------GIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVC 208 (396)
Q Consensus 160 ~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 208 (396)
.++...+++..... ++..+......++.. ..|+..+++.+++.+...
T Consensus 167 ~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~--~~Gd~R~lln~Le~a~~~ 221 (447)
T 3pvs_A 167 TEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAEL--VNGDARRALNTLEMMADM 221 (447)
T ss_dssp HHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHH--HCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHH--CCCCHHHHHHHHHHHHHh
Confidence 34455555555542 233455566666554 478888888888877654
No 339
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=30.94 E-value=1e+02 Score=23.06 Aligned_cols=31 Identities=23% Similarity=0.229 Sum_probs=19.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHhhccCCCCC
Q 016027 77 ILLDSLCKQGRVKAASEYFHKRKELDQSWAP 107 (396)
Q Consensus 77 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 107 (396)
..+..|.+.|.+++|.++|++....++...|
T Consensus 122 qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~ 152 (211)
T 3bqo_A 122 QAIAVCMENGNFKEAEEVFERIFGDPNSHMP 152 (211)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHC-----CCT
T ss_pred HHHHHHHHccchHHHHHHHHHHhcCCCCchH
Confidence 4566788888888888888887666655444
No 340
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=30.86 E-value=1.7e+02 Score=21.95 Aligned_cols=83 Identities=13% Similarity=0.033 Sum_probs=40.5
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch---hhHHHHHHHHHh
Q 016027 152 EGYCRLRRVDRAIRLVKEMRKEGIEPNAIV--YNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTM---VTYTSLVKGYCK 226 (396)
Q Consensus 152 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~ 226 (396)
...+..|+.+.+..+++.+.+.|..++... -...+...+..|+.+-+. .+.+.|..++. .-. ..+...+.
T Consensus 14 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~----~Ll~~g~~~~~~~~~g~-t~l~~A~~ 88 (241)
T 1k1a_A 14 HIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVR----LLVTAGASPMALDRHGQ-TAAHLACE 88 (241)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHH----HHHHTTCCTTCCCTTSC-CHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHH----HHHHcCCCccccCCCCC-CHHHHHHH
Confidence 344566888777777776666654443221 112334445566665443 33334443321 112 22333445
Q ss_pred cCChHHHHHHHHH
Q 016027 227 AGDLEGASKILKM 239 (396)
Q Consensus 227 ~~~~~~a~~~~~~ 239 (396)
.|+.+-+..+++.
T Consensus 89 ~~~~~~~~~Ll~~ 101 (241)
T 1k1a_A 89 HRSPTCLRALLDS 101 (241)
T ss_dssp TTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHc
Confidence 6666655555444
No 341
>4fjo_A DNA repair protein REV1; translesion synthesis, transferase -DNA binding protein COMP transferase-DNA binding protein complex; HET: DNA; 2.72A {Mus musculus} PDB: 2lsg_A* 2lsk_A* 2lsy_A*
Probab=30.74 E-value=85 Score=20.18 Aligned_cols=50 Identities=12% Similarity=-0.035 Sum_probs=27.9
Q ss_pred hhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 016027 12 DSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANN 61 (396)
Q Consensus 12 ~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 61 (396)
.+-..++.+.+.....|...+...+...+..+.+.++.+++..++..+..
T Consensus 12 ~dvr~~l~~Wv~~~~~P~~~DV~~l~~yL~~lv~~~~lek~~~vlk~l~r 61 (97)
T 4fjo_A 12 SDVKTLLKEWITTISDPMEEDILQVVRYCTDLIEEKDLEKLDLVIKYMKR 61 (97)
T ss_dssp HHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHH
Confidence 33444444444333455544555666666666677777777666555544
No 342
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=30.63 E-value=92 Score=19.80 Aligned_cols=25 Identities=20% Similarity=0.127 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHH
Q 016027 74 LFEILLDSLCKQGRVKAASEYFHKR 98 (396)
Q Consensus 74 ~~~~l~~~~~~~~~~~~A~~~~~~~ 98 (396)
.+......+.+.|+|++|++..+++
T Consensus 17 ~~~RrAe~ll~~gkydeAIech~kA 41 (97)
T 2crb_A 17 QQSRRADRLLAAGKYEEAISCHRKA 41 (97)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhhhHHHHHHhcCCHHHHHHHHHHH
Confidence 3455666777777777776666554
No 343
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=28.67 E-value=1.3e+02 Score=20.03 Aligned_cols=78 Identities=13% Similarity=0.151 Sum_probs=45.7
Q ss_pred CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCChhhHHHHHHHHHhcCChhHHHHH
Q 016027 263 GKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKC-RGCDIDLDTSTMLIHLLCRMYKFDEASAE 341 (396)
Q Consensus 263 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 341 (396)
.++.+|+.-+++.... .+|......++..+... ++.+.++.+...+ .|. .+.++...+....+.|-.+.. +.
T Consensus 2 ~~~~~al~~L~e~~~~--~~~~~~~dg~i~~fe~t--~Elawk~~k~~l~~~g~--~~~s~rd~~r~a~~~glI~~~-~~ 74 (119)
T 1wty_A 2 ASLARAVERLKAALER--PKDEFIRDSAIQRFEFT--FELAWKTLKTFLELQGL--EARSPRAAIRGAFQVGLLPED-PF 74 (119)
T ss_dssp CCHHHHHHHHHHHHSS--CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHTC--CCSSHHHHHHHHHHHTSSCCC-HH
T ss_pred hHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHcCC--CCCCHHHHHHHHHHcCCCCcH-HH
Confidence 3566777777777554 34555555666555443 5566666666554 344 455666666666666665544 45
Q ss_pred HHHHHH
Q 016027 342 FEDMIR 347 (396)
Q Consensus 342 ~~~~~~ 347 (396)
|..|..
T Consensus 75 w~~m~~ 80 (119)
T 1wty_A 75 WLEMLE 80 (119)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555544
No 344
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=28.38 E-value=1.8e+02 Score=21.42 Aligned_cols=17 Identities=12% Similarity=-0.011 Sum_probs=7.6
Q ss_pred chhhHHHHHHHHHhcCC
Q 016027 213 TMVTYTSLVKGYCKAGD 229 (396)
Q Consensus 213 ~~~~~~~l~~~~~~~~~ 229 (396)
+..+-...+.++.+.+.
T Consensus 156 ~~~vr~~a~~aL~~~~~ 172 (211)
T 3ltm_A 156 DGWVRQSAADALGEIGG 172 (211)
T ss_dssp SHHHHHHHHHHHHHHCS
T ss_pred CHHHHHHHHHHHHHhCc
Confidence 33444444444444443
No 345
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=28.06 E-value=2.4e+02 Score=23.11 Aligned_cols=15 Identities=20% Similarity=0.286 Sum_probs=8.0
Q ss_pred HHcCCchHHHHHHHH
Q 016027 365 KKRGMTALAQKLCNV 379 (396)
Q Consensus 365 ~~~g~~~~A~~~~~~ 379 (396)
++.|+.+-+..+++.
T Consensus 252 ~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 252 VRAAMVLLTKELLQK 266 (364)
T ss_dssp HHTCCHHHHHHHHHH
T ss_pred HHhChHHHHHHHHHc
Confidence 445666555555544
No 346
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=27.60 E-value=1.6e+02 Score=21.99 Aligned_cols=48 Identities=10% Similarity=0.074 Sum_probs=23.0
Q ss_pred HHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHH
Q 016027 81 SLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFW 132 (396)
Q Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 132 (396)
..+..|+.+....+++.-... . .++.. -...+...+..|+.+-+..++
T Consensus 15 ~A~~~g~~~~~~~Ll~~g~~~--~-~~~~~-g~t~L~~A~~~~~~~~v~~Ll 62 (240)
T 3eu9_A 15 KATQYGIYERCRELVEAGYDV--R-QPDKE-NVTLLHWAAINNRIDLVKYYI 62 (240)
T ss_dssp HHHHTTCHHHHHHHHHTTCCT--T-CCCTT-SCCHHHHHHHTTCHHHHHHHH
T ss_pred HHHHcCChHHHHHHHHcCCCc--C-CCCCC-CCCHHHHHHHhCCHHHHHHHH
Confidence 345678877666665532111 1 11111 122445556677765544443
No 347
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=27.53 E-value=1e+02 Score=19.12 Aligned_cols=14 Identities=29% Similarity=0.503 Sum_probs=6.6
Q ss_pred HcCChHHHHHHHHH
Q 016027 84 KQGRVKAASEYFHK 97 (396)
Q Consensus 84 ~~~~~~~A~~~~~~ 97 (396)
+.|++++|+.+|..
T Consensus 31 ~~g~y~eAl~lY~~ 44 (83)
T 2w2u_A 31 KEGNAEEAITNYKK 44 (83)
T ss_dssp HTTCHHHHHHHHHH
T ss_pred HhccHHHHHHHHHH
Confidence 34455554444443
No 348
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=27.45 E-value=1.9e+02 Score=21.56 Aligned_cols=39 Identities=18% Similarity=0.126 Sum_probs=26.2
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcC
Q 016027 190 VEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAG 228 (396)
Q Consensus 190 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 228 (396)
.+-.+.+.|+-++-+|++.|..|....-..++.+.-..|
T Consensus 18 iRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 18 VRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 345778888888888888877666555555555554444
No 349
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=26.99 E-value=1.8e+02 Score=20.97 Aligned_cols=71 Identities=14% Similarity=0.121 Sum_probs=44.3
Q ss_pred CCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-hhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH
Q 016027 106 APTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPN-VVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNA 179 (396)
Q Consensus 106 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 179 (396)
+-|.......+...-.. +.+.++|..|...|+-.. +..|......+-..|++.+|.++|+.-++.+-.|-.
T Consensus 60 knD~RyLklWl~ya~~~---~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 60 YSDPRFLNLWLKLGRLC---NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp TTCHHHHHHHHHHHHHC---SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred ccCHHHHHHHHHHHHhc---CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 34554444444322222 346677888877765433 445666777777788888888888888877666643
No 350
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=26.84 E-value=1.2e+02 Score=21.81 Aligned_cols=21 Identities=5% Similarity=0.415 Sum_probs=9.8
Q ss_pred HHHHHHccCCHHHHHHHHHHH
Q 016027 150 LVEGYCRLRRVDRAIRLVKEM 170 (396)
Q Consensus 150 l~~~~~~~~~~~~a~~~~~~~ 170 (396)
++.-|...++.++|...++++
T Consensus 16 ii~EYf~~~D~~Ea~~~l~eL 36 (165)
T 2rg8_A 16 IIQEYFEHGDTNEVAEMLRDL 36 (165)
T ss_dssp HHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHh
Confidence 344444444555554444443
No 351
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=26.79 E-value=4.4e+02 Score=25.44 Aligned_cols=157 Identities=10% Similarity=-0.007 Sum_probs=76.0
Q ss_pred HHHHHHHHhcCC---hHHHHHHHHHHHHCC----CCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 016027 218 TSLVKGYCKAGD---LEGASKILKMMISRG----FLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHIL 290 (396)
Q Consensus 218 ~~l~~~~~~~~~---~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 290 (396)
..++...|..|+ .+.|.+.|+.....+ ++|+ .-..+...-.+.|..++-..+++...... +..--..+
T Consensus 690 ~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~d--lr~~vy~~~~~~g~~~~~~~l~~~~~~~~---~~~ek~~l 764 (909)
T 4fke_A 690 INAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPN--LRSTIYCNAIAQGGQDQWDFAWGQLQQAQ---LVNEADKL 764 (909)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTT--THHHHHHHHHHHSCHHHHHHHHHHHHHCC---SHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHH--HHHHHHHHHHHhCCHHHHHHHHHHHHccC---CHHHHHHH
Confidence 345566666666 345666776665431 3333 23333333345566665555666665542 33334556
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc-CChhHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHH
Q 016027 291 LKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRM-YKFDEASAEFEDMIR---RGLVPHYLTFKRLNDEFKK 366 (396)
Q Consensus 291 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~---~~~~p~~~~~~~l~~~~~~ 366 (396)
+.+++...+.....++++.+.....-....... ++.+.... ...+.|.+.+.+=.+ ..+......+..++.....
T Consensus 765 l~aL~~~~d~~~l~~~L~~~l~~~~ir~qd~~~-~~~~v~~n~~g~~~~~~f~~~n~~~l~~~~~~~~~~~~~~i~~~~~ 843 (909)
T 4fke_A 765 RSALACSNEVWLLNRYLGYTLNPDLIRKQDATS-TINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGVTR 843 (909)
T ss_dssp HHHHTTCCCHHHHHHHHHHTTCTTTSCGGGHHH-HHHHHHHSTTHHHHHHHHHHHHCTTTTTSSSSCCCCHHHHHHHHHT
T ss_pred HHHhCCCCCHHHHHHHHHHHhCCCCCchhhHHH-HHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 677777777777777776665432111222222 23333321 112333333332111 1122233345666666665
Q ss_pred cCCchHHHHHHHHH
Q 016027 367 RGMTALAQKLCNVM 380 (396)
Q Consensus 367 ~g~~~~A~~~~~~~ 380 (396)
.-..++-.+-++.+
T Consensus 844 ~~~t~~~~~~~~~f 857 (909)
T 4fke_A 844 RFSSEFELQQLEQF 857 (909)
T ss_dssp TCCSHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHH
Confidence 55555555555554
No 352
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=26.68 E-value=69 Score=19.63 Aligned_cols=28 Identities=25% Similarity=0.240 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 016027 35 TFVILIRRYARAGMVEAAIWTFEFANNL 62 (396)
Q Consensus 35 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 62 (396)
-...+++-|+..|+++.|+.+|+.+.+.
T Consensus 14 e~~k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 14 ENVKLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 3456788899999999999999977764
No 353
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=26.47 E-value=1e+02 Score=18.07 Aligned_cols=27 Identities=15% Similarity=0.145 Sum_probs=12.3
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcC
Q 016027 148 GTLVEGYCRLRRVDRAIRLVKEMRKEG 174 (396)
Q Consensus 148 ~~l~~~~~~~~~~~~a~~~~~~~~~~~ 174 (396)
+.++..+++..-.+.++-.+++..+.|
T Consensus 6 ~Qll~l~Aed~AieDaiy~L~~aL~~g 32 (65)
T 2f6m_A 6 NQLYNLVAQDYALTDTIEALSRMLHRG 32 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 334444444444444444444444444
No 354
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=26.11 E-value=1.1e+02 Score=18.92 Aligned_cols=14 Identities=43% Similarity=0.850 Sum_probs=6.3
Q ss_pred HcCChHHHHHHHHH
Q 016027 84 KQGRVKAASEYFHK 97 (396)
Q Consensus 84 ~~~~~~~A~~~~~~ 97 (396)
+.|++++|+.+|..
T Consensus 23 ~~g~y~eAl~lY~~ 36 (83)
T 2v6y_A 23 KEGKVEDAITYYKK 36 (83)
T ss_dssp HTTCHHHHHHHHHH
T ss_pred HhccHHHHHHHHHH
Confidence 34444444444443
No 355
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=25.78 E-value=1.1e+02 Score=19.52 Aligned_cols=34 Identities=18% Similarity=0.204 Sum_probs=16.1
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCch
Q 016027 334 KFDEASAEFEDMIRRGLVPHYLTFKRLNDEFKKRGMTA 371 (396)
Q Consensus 334 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 371 (396)
..+.|.++++.+..+|.. .|..++.++...|...
T Consensus 52 ~~~~ar~Lld~L~~rG~~----Af~~F~~aL~et~~~~ 85 (97)
T 3ygs_P 52 RRDQARQLIIDLETRGSQ----ALPLFISCLEDTGQDM 85 (97)
T ss_dssp HHHHHHHHHHHHTTSCTT----HHHHHHHHHHTTTCHH
T ss_pred hHHHHHHHHHHHHHcChH----HHHHHHHHHHHcCcHH
Confidence 345555555555444421 4555555554444433
No 356
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=25.59 E-value=2.1e+02 Score=21.41 Aligned_cols=56 Identities=11% Similarity=0.138 Sum_probs=31.4
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCC-----hHHHHHHHHHHHHCCCC
Q 016027 190 VEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGD-----LEGASKILKMMISRGFL 246 (396)
Q Consensus 190 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~ 246 (396)
.+-.+.+.|+-++-+|++.| .|....-..++.+.-..|. ...|...++.....|.+
T Consensus 25 iRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 85 (204)
T 2r9g_A 25 IRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLP 85 (204)
T ss_dssp HHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTT
T ss_pred HhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 34567777777777777777 5555555555555544443 22344444444444543
No 357
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=24.92 E-value=1.4e+02 Score=19.03 Aligned_cols=47 Identities=6% Similarity=-0.058 Sum_probs=23.7
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH-----HHcCCchHHHHHHHHH
Q 016027 332 MYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEF-----KKRGMTALAQKLCNVM 380 (396)
Q Consensus 332 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~-----~~~g~~~~A~~~~~~~ 380 (396)
.|++-+|-++++..=.....|....|..+|+.. .+.|+. |.+++.+.
T Consensus 14 ~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a 65 (94)
T 2cwy_A 14 AGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKA 65 (94)
T ss_dssp TTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHH
T ss_pred CCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHH
Confidence 366666666666664433123334455555422 245555 55555553
No 358
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=24.40 E-value=3.1e+02 Score=22.86 Aligned_cols=64 Identities=20% Similarity=0.295 Sum_probs=40.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCC--HHHHHHHHHHHHHCCCC
Q 016027 217 YTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGK--VEDAMNLYRKMIESGYT 281 (396)
Q Consensus 217 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~ 281 (396)
...++.-|...++.++|...++++....+. ...+...+..++-+.++ .+...+++..+...++-
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~gll 285 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 285 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCC
Confidence 466788888889999999999888643222 23334444455554433 34566777777776654
No 359
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=24.01 E-value=97 Score=16.93 Aligned_cols=22 Identities=14% Similarity=0.111 Sum_probs=14.3
Q ss_pred ccCchhHHHHHHHHhCCCCCCC
Q 016027 8 AKEFDSAWCLLLDKIGGHEVPD 29 (396)
Q Consensus 8 ~g~~~~A~~~~~~~~~~~~~p~ 29 (396)
.++...|+++++...+.+..|+
T Consensus 6 ~RDv~RaiELle~lq~sgevp~ 27 (53)
T 1zl8_A 6 ERDVQRILELMEHVQKTGEVNN 27 (53)
T ss_dssp HHHHHHHHHHHHHHGGGSSSTH
T ss_pred HHHHHHHHHHHHHHHHcCCCCc
Confidence 4566778887777766654443
No 360
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=23.58 E-value=2.4e+02 Score=21.32 Aligned_cols=57 Identities=9% Similarity=0.089 Sum_probs=34.8
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCC-----hHHHHHHHHHHHHCCCC
Q 016027 190 VEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGD-----LEGASKILKMMISRGFL 246 (396)
Q Consensus 190 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~ 246 (396)
.+-++.+.|+-++-+|++.|..|.......++.+.-..|. ...|...++.....|.+
T Consensus 46 iRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 107 (213)
T 3ctd_A 46 IRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFP 107 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTT
T ss_pred HhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 3457788888888888888776666555555555554443 23344445555555543
No 361
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=23.39 E-value=2.5e+02 Score=21.46 Aligned_cols=54 Identities=15% Similarity=0.267 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Q 016027 161 DRAIRLVKEMRKEGIEP-NAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTM 214 (396)
Q Consensus 161 ~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 214 (396)
+.+..+|..|...|+-. -+..|......+...|++.+|..+|+.-++.+-.|-.
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 185 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFL 185 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 46668889998887543 4556778888899999999999999999988777643
No 362
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=23.13 E-value=2.2e+02 Score=20.67 Aligned_cols=91 Identities=12% Similarity=-0.016 Sum_probs=39.8
Q ss_pred ChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 016027 248 SPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIH 327 (396)
Q Consensus 248 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 327 (396)
+...-...+.++...++.+ +...+..+.. .++..+-...+.++...+..+ +...+..+.. .++..+-...+.
T Consensus 89 ~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~A~~ 160 (201)
T 3ltj_A 89 DGWVRQSAAVALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAAD 160 (201)
T ss_dssp SHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHTCGG-GHHHHHHHTT---CSSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCCHH-HHHHHHHHHc---CCCHHHHHHHHH
Confidence 4444445555555555432 2222223322 234444444455555555432 3333333332 234555555555
Q ss_pred HHHhcCChhHHHHHHHHHHH
Q 016027 328 LLCRMYKFDEASAEFEDMIR 347 (396)
Q Consensus 328 ~~~~~~~~~~a~~~~~~~~~ 347 (396)
++.+.|. .++...+..+.+
T Consensus 161 aL~~~~~-~~~~~~L~~~l~ 179 (201)
T 3ltj_A 161 ALGEIGG-ERVRAAMEKLAE 179 (201)
T ss_dssp HHHHHCS-HHHHHHHHHHHH
T ss_pred HHHHhCc-hhHHHHHHHHHh
Confidence 5555554 334444444443
No 363
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=22.23 E-value=2.3e+02 Score=24.60 Aligned_cols=63 Identities=19% Similarity=0.266 Sum_probs=39.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChh--------hHH-HHHHHHhccCCHHHHHHHHHHHHHC
Q 016027 216 TYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPT--------TYN-YFFRYFSKFGKVEDAMNLYRKMIES 278 (396)
Q Consensus 216 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--------~~~-~l~~~~~~~~~~~~a~~~~~~~~~~ 278 (396)
..+.+...|.+.++...+..+++.+...+..|+.. +|. .+.+.+...+++.+|.+.+..+...
T Consensus 178 l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~ 249 (455)
T 3t5v_B 178 LVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQS 249 (455)
T ss_dssp HHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHh
Confidence 34566777788888888888887777655432222 222 2344556677777777776665543
No 364
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=21.72 E-value=2.2e+02 Score=24.66 Aligned_cols=61 Identities=10% Similarity=0.085 Sum_probs=42.6
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChh--------hHH-HHHHHHHhcCCHHHHHHHHHHHH
Q 016027 251 TYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRL--------TYH-ILLKILCKEDKLDLAIQVSKEMK 311 (396)
Q Consensus 251 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--------~~~-~l~~~~~~~~~~~~a~~~~~~~~ 311 (396)
..+.+...|.+.++...+..+++.+...+..|+.. +|. .+.+.+...+++.+|.+.+..+.
T Consensus 178 l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~ 247 (455)
T 3t5v_B 178 LVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAF 247 (455)
T ss_dssp HHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHH
Confidence 45778889999999999999999888876533322 222 34455666778888877666554
No 365
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=21.69 E-value=1.5e+02 Score=22.92 Aligned_cols=54 Identities=9% Similarity=0.029 Sum_probs=26.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCC-------ChhHHHHHHHHHH--ccCCHHHHHHHHHH
Q 016027 116 LNGWFRSKNVKDAERFWLEMRKENVTP-------NVVTYGTLVEGYC--RLRRVDRAIRLVKE 169 (396)
Q Consensus 116 ~~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~~l~~~~~--~~~~~~~a~~~~~~ 169 (396)
+...++.|+.+.+..+++.....+... +..-.+.|..++. +.|+.+-+..+++.
T Consensus 17 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ 79 (273)
T 2pnn_A 17 IFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDV 79 (273)
T ss_dssp HHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHh
Confidence 334456677777766666655544322 2222333433332 23555555555544
No 366
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=21.53 E-value=2.4e+02 Score=20.51 Aligned_cols=15 Identities=20% Similarity=0.330 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHCCCC
Q 016027 232 GASKILKMMISRGFL 246 (396)
Q Consensus 232 ~a~~~~~~~~~~~~~ 246 (396)
.+..++..+.+.|.-
T Consensus 51 ~ie~vl~~L~~~g~l 65 (177)
T 3e3v_A 51 YISEIINKLIDLDLI 65 (177)
T ss_dssp HHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHcCCC
Confidence 344444444444444
No 367
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=21.25 E-value=57 Score=22.04 Aligned_cols=53 Identities=11% Similarity=0.063 Sum_probs=35.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 016027 146 TYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGM 201 (396)
Q Consensus 146 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 201 (396)
.|.-.|...+.+++.+-|.++++...+.| +...|.+.+-.|...=+++-++++
T Consensus 34 LykDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVLEl 86 (125)
T 3qil_A 34 LYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLEL 86 (125)
T ss_dssp CSSHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHHHT
T ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHHHH
Confidence 34445566667777777777777777766 566677777767666666665543
No 368
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=21.15 E-value=2e+02 Score=19.36 Aligned_cols=17 Identities=12% Similarity=0.024 Sum_probs=8.6
Q ss_pred HccCCHHHHHHHHHHHH
Q 016027 155 CRLRRVDRAIRLVKEMR 171 (396)
Q Consensus 155 ~~~~~~~~a~~~~~~~~ 171 (396)
...++++.|.++...+.
T Consensus 72 l~~~dy~~A~~ih~~l~ 88 (118)
T 2yru_A 72 LLHHQWDAADDIHRSLM 88 (118)
T ss_dssp HHHTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 34455555555554444
No 369
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=21.10 E-value=4.4e+02 Score=23.41 Aligned_cols=20 Identities=5% Similarity=0.086 Sum_probs=11.7
Q ss_pred HHHHHHHcCChHHHHHHHHH
Q 016027 78 LLDSLCKQGRVKAASEYFHK 97 (396)
Q Consensus 78 l~~~~~~~~~~~~A~~~~~~ 97 (396)
...-+...+-++.|.++.-.
T Consensus 73 ~c~~~~~l~~y~GaVeL~L~ 92 (525)
T 3i5p_A 73 AVSMMLSVNYYPKSIEFLLN 92 (525)
T ss_dssp HHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHcCChHHHHHHHHH
Confidence 45556666666666665444
No 370
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=20.56 E-value=3.5e+02 Score=22.11 Aligned_cols=29 Identities=10% Similarity=-0.028 Sum_probs=21.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 016027 322 STMLIHLLCRMYKFDEASAEFEDMIRRGL 350 (396)
Q Consensus 322 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 350 (396)
...-+....+.+++..|..+.+++++.+.
T Consensus 210 Lr~AM~~a~K~KNy~tAa~fArrLLel~p 238 (325)
T 3mv2_A 210 LQVAMSQHFKHKNFLQASYFAGEFLKIIS 238 (325)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 34456667788888888888888888653
No 371
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=20.40 E-value=2.9e+02 Score=21.00 Aligned_cols=20 Identities=15% Similarity=0.047 Sum_probs=11.6
Q ss_pred HHHHcCCchHHHHHHHHHhc
Q 016027 363 EFKKRGMTALAQKLCNVMSS 382 (396)
Q Consensus 363 ~~~~~g~~~~A~~~~~~~~~ 382 (396)
...+.|+.+-+..+++.-..
T Consensus 227 ~A~~~g~~~~v~~Ll~~g~~ 246 (256)
T 2etb_A 227 LAAKEGKIEIFRHILQREFS 246 (256)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHhCCCC
Confidence 34566777666666655433
No 372
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=20.35 E-value=1.4e+02 Score=21.46 Aligned_cols=23 Identities=4% Similarity=0.346 Sum_probs=12.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHH
Q 016027 114 ILLNGWFRSKNVKDAERFWLEMR 136 (396)
Q Consensus 114 ~l~~~~~~~~~~~~a~~~~~~~~ 136 (396)
.++.-|...++.++|...++++.
T Consensus 15 ~ii~EYf~~~D~~Ea~~~l~eL~ 37 (165)
T 2rg8_A 15 PIIQEYFEHGDTNEVAEMLRDLN 37 (165)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHHHhC
Confidence 34555555566666666665544
No 373
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=20.00 E-value=1.6e+02 Score=21.44 Aligned_cols=57 Identities=19% Similarity=0.091 Sum_probs=0.0
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHH
Q 016027 282 PDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEAS 339 (396)
Q Consensus 282 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 339 (396)
|....++.++..++...-.+.++..+.++...|.- +..+|-.-++.+++...+..|.
T Consensus 109 ~~~~l~~Qll~l~Aed~AieDaIy~L~~al~~g~I-~ld~ylK~vR~LaReQF~~ral 165 (174)
T 2p22_A 109 AKTDGLNQLYNLVAQDYALTDTIECLSRMLHRGTI-PLDTFVKQGRELARQQFLVRWH 165 (174)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHH
Done!