Query 016028
Match_columns 396
No_of_seqs 221 out of 1584
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 03:08:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016028.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016028hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1230 CzcD Co/Zn/Cd efflux s 100.0 1.2E-54 2.5E-59 407.2 33.1 277 69-396 16-292 (296)
2 KOG1482 Zn2+ transporter [Inor 100.0 2.8E-53 6.1E-58 400.0 27.8 313 53-396 52-364 (379)
3 PRK03557 zinc transporter ZitB 100.0 2.6E-51 5.7E-56 396.4 36.2 274 72-396 16-290 (312)
4 PRK09509 fieF ferrous iron eff 100.0 2.2E-49 4.7E-54 381.6 35.4 275 72-396 8-285 (299)
5 COG0053 MMT1 Predicted Co/Zn/C 100.0 2.2E-49 4.9E-54 379.8 35.3 279 68-396 6-288 (304)
6 TIGR01297 CDF cation diffusion 100.0 2.9E-46 6.3E-51 354.9 30.3 261 87-396 2-266 (268)
7 KOG1483 Zn2+ transporter ZNT1 100.0 3.5E-46 7.6E-51 353.1 17.1 322 73-396 7-368 (404)
8 KOG1484 Putative Zn2+ transpor 100.0 6.5E-44 1.4E-48 331.8 29.1 304 71-396 31-345 (354)
9 KOG1485 Mitochondrial Fe2+ tra 100.0 7.4E-43 1.6E-47 335.3 28.3 272 72-396 112-398 (412)
10 PF01545 Cation_efflux: Cation 100.0 2.2E-44 4.8E-49 344.6 16.7 272 77-396 1-279 (284)
11 COG3965 Predicted Co/Zn/Cd cat 99.9 5.4E-25 1.2E-29 197.9 20.8 269 70-386 15-297 (314)
12 KOG2802 Membrane protein HUEL 99.8 1.1E-20 2.3E-25 177.5 12.4 220 72-369 204-435 (503)
13 COG0053 MMT1 Predicted Co/Zn/C 98.1 2.3E-05 5.1E-10 75.7 11.0 90 76-173 122-211 (304)
14 TIGR01297 CDF cation diffusion 97.9 0.00011 2.5E-09 69.5 11.5 91 76-174 99-189 (268)
15 PRK09509 fieF ferrous iron eff 97.8 0.00017 3.7E-09 69.6 11.6 89 77-173 121-209 (299)
16 PRK03557 zinc transporter ZitB 97.1 0.0072 1.6E-07 58.7 11.9 88 79-174 130-217 (312)
17 COG1230 CzcD Co/Zn/Cd efflux s 95.4 0.086 1.9E-06 50.5 8.7 77 250-326 42-124 (296)
18 KOG1485 Mitochondrial Fe2+ tra 95.3 0.051 1.1E-06 53.8 7.1 87 79-173 235-321 (412)
19 PF01545 Cation_efflux: Cation 89.3 0.34 7.3E-06 46.1 3.3 90 77-173 109-201 (284)
20 PLN02601 beta-carotene hydroxy 87.5 7.3 0.00016 36.6 10.5 75 123-205 83-160 (303)
21 PF02535 Zip: ZIP Zinc transpo 85.2 36 0.00078 32.5 15.9 32 140-171 36-67 (317)
22 PF14535 AMP-binding_C_2: AMP- 84.6 8.9 0.00019 30.1 8.6 66 327-394 5-75 (96)
23 PF03780 Asp23: Asp23 family; 81.0 11 0.00023 30.1 7.9 48 347-395 50-104 (108)
24 PF01883 DUF59: Domain of unkn 78.6 10 0.00023 27.8 6.6 47 344-393 26-72 (72)
25 PRK10019 nickel/cobalt efflux 76.9 71 0.0015 30.5 15.4 29 141-169 85-113 (279)
26 KOG1484 Putative Zn2+ transpor 76.0 34 0.00075 33.3 10.7 71 251-321 56-132 (354)
27 COG4858 Uncharacterized membra 73.6 67 0.0015 28.7 12.3 49 154-202 102-151 (226)
28 PF07444 Ycf66_N: Ycf66 protei 72.5 42 0.00092 25.9 8.5 47 264-312 33-82 (84)
29 COG4956 Integral membrane prot 72.3 92 0.002 30.1 12.4 38 287-324 106-143 (356)
30 PF09580 Spore_YhcN_YlaJ: Spor 71.8 23 0.00049 31.1 8.1 65 325-394 74-139 (177)
31 COG3696 Putative silver efflux 65.7 22 0.00048 39.2 7.6 68 328-395 579-656 (1027)
32 KOG1483 Zn2+ transporter ZNT1 65.4 39 0.00084 33.6 8.7 71 252-322 31-107 (404)
33 PF01037 AsnC_trans_reg: AsnC 64.2 25 0.00055 25.4 5.9 61 326-395 10-70 (74)
34 TIGR02945 SUF_assoc FeS assemb 62.0 62 0.0013 25.3 8.1 41 355-395 37-77 (99)
35 TIGR00489 aEF-1_beta translati 53.3 98 0.0021 24.1 7.5 66 324-393 15-82 (88)
36 PLN02159 Fe(2+) transport prot 52.8 2.4E+02 0.0051 27.8 15.4 31 141-171 80-110 (337)
37 TIGR03406 FeS_long_SufT probab 52.8 99 0.0022 27.3 8.4 70 326-395 73-153 (174)
38 PF02535 Zip: ZIP Zinc transpo 50.4 1.2E+02 0.0027 28.7 9.7 70 101-171 202-287 (317)
39 PF11381 DUF3185: Protein of u 50.0 58 0.0013 23.3 5.3 47 148-194 8-57 (59)
40 PRK11023 outer membrane lipopr 46.2 33 0.00072 30.7 4.5 69 317-395 80-149 (191)
41 PRK00435 ef1B elongation facto 44.8 1.3E+02 0.0029 23.4 7.0 66 324-393 15-82 (88)
42 TIGR02159 PA_CoA_Oxy4 phenylac 42.7 99 0.0021 26.5 6.7 42 353-395 23-64 (146)
43 PF06570 DUF1129: Protein of u 42.1 2.6E+02 0.0056 25.1 13.7 21 79-99 85-105 (206)
44 PF09685 Tic20: Tic20-like pro 41.2 1.7E+02 0.0038 22.9 7.8 32 106-137 73-104 (109)
45 PRK11179 DNA-binding transcrip 40.8 1.2E+02 0.0027 25.8 7.1 61 326-395 81-141 (153)
46 PF00403 HMA: Heavy-metal-asso 39.3 67 0.0015 22.4 4.4 45 328-380 13-58 (62)
47 PRK10263 DNA translocase FtsK; 38.6 4.8E+02 0.01 30.6 12.8 134 114-311 30-178 (1355)
48 TIGR02898 spore_YhcN_YlaJ spor 37.9 1.9E+02 0.0041 25.2 7.7 61 328-394 56-120 (158)
49 COG1279 Lysine efflux permease 37.3 1.7E+02 0.0036 26.5 7.4 60 255-317 34-94 (202)
50 PF10934 DUF2634: Protein of u 37.1 1.6E+02 0.0036 23.8 6.9 51 314-365 52-107 (112)
51 PF04972 BON: BON domain; Int 36.1 19 0.00041 25.6 1.1 29 318-346 30-58 (64)
52 PF11712 Vma12: Endoplasmic re 36.0 1.5E+02 0.0033 25.0 6.8 24 76-99 76-99 (142)
53 KOG1482 Zn2+ transporter [Inor 34.6 3.1E+02 0.0068 27.3 9.3 73 250-322 93-171 (379)
54 PF09877 DUF2104: Predicted me 34.5 29 0.00064 27.4 1.9 20 138-157 78-97 (99)
55 PRK02047 hypothetical protein; 34.4 1.9E+02 0.004 22.6 6.5 60 326-389 28-88 (91)
56 KOG1819 FYVE finger-containing 34.2 1.4E+02 0.0031 30.6 7.1 37 266-304 655-691 (990)
57 COG4858 Uncharacterized membra 34.1 3.5E+02 0.0076 24.3 10.2 20 79-98 100-119 (226)
58 PRK10553 assembly protein for 33.6 2.3E+02 0.0049 22.0 6.9 58 326-393 17-74 (87)
59 PRK00907 hypothetical protein; 31.9 2.2E+02 0.0048 22.3 6.5 60 325-388 28-88 (92)
60 cd00292 EF1B Elongation factor 31.5 2.5E+02 0.0054 21.8 7.3 66 324-393 15-82 (88)
61 TIGR00439 ftsX putative protei 31.3 2.5E+02 0.0054 27.1 8.3 71 322-392 75-162 (309)
62 PRK09579 multidrug efflux prot 31.3 1.9E+02 0.0042 33.0 8.5 53 328-383 60-113 (1017)
63 KOG0255 Synaptic vesicle trans 31.3 5.8E+02 0.013 26.0 12.2 66 267-334 212-277 (521)
64 PF11654 DUF2665: Protein of u 31.1 43 0.00094 22.8 2.1 19 289-307 5-23 (47)
65 COG4035 Predicted membrane pro 31.1 34 0.00073 26.7 1.7 21 138-158 85-105 (108)
66 PRK10555 aminoglycoside/multid 30.4 1.9E+02 0.0042 33.0 8.4 61 320-383 51-112 (1037)
67 PRK10503 multidrug efflux syst 30.3 2.1E+02 0.0045 32.8 8.6 60 320-383 62-122 (1040)
68 PF03927 NapD: NapD protein; 30.0 2.4E+02 0.0051 21.3 6.3 57 326-393 15-71 (79)
69 COG0581 PstA ABC-type phosphat 29.6 3.8E+02 0.0082 25.8 9.0 57 259-315 107-167 (292)
70 cd04870 ACT_PSP_1 CT domains f 29.1 2.3E+02 0.005 20.6 8.6 58 327-388 12-69 (75)
71 PRK15127 multidrug efflux syst 29.1 2.1E+02 0.0046 32.7 8.4 61 320-383 51-112 (1049)
72 COG0841 AcrB Cation/multidrug 28.4 2.4E+02 0.0051 32.2 8.5 59 320-382 52-111 (1009)
73 PHA02568 J baseplate assembly 28.4 2.3E+02 0.0049 27.4 7.4 64 320-384 178-242 (300)
74 PF07687 M20_dimer: Peptidase 27.9 96 0.0021 24.2 4.1 31 354-384 76-106 (111)
75 PRK11169 leucine-responsive tr 27.8 2.6E+02 0.0057 24.0 7.2 61 326-395 88-148 (164)
76 KOG4349 Uncharacterized conser 27.4 3.5E+02 0.0076 22.4 7.0 39 111-159 59-97 (143)
77 PF01390 SEA: SEA domain; Int 27.3 3E+02 0.0064 21.3 8.5 43 342-384 51-95 (107)
78 MTH00140 COX2 cytochrome c oxi 26.5 3.6E+02 0.0078 24.8 8.1 30 132-161 51-80 (228)
79 PF08002 DUF1697: Protein of u 26.5 2.4E+02 0.0053 23.7 6.4 52 326-388 19-70 (137)
80 PRK04201 zinc transporter ZupT 26.3 5.4E+02 0.012 24.1 12.3 29 141-169 35-63 (265)
81 PRK09577 multidrug efflux prot 26.1 2.7E+02 0.0059 31.8 8.6 60 320-383 51-111 (1032)
82 PRK10614 multidrug efflux syst 25.2 2.7E+02 0.0059 31.8 8.4 47 330-382 66-112 (1025)
83 PF05915 DUF872: Eukaryotic pr 24.8 3.2E+02 0.0069 22.4 6.5 45 146-190 42-88 (115)
84 PF01773 Nucleos_tra2_N: Na+ d 24.2 3.1E+02 0.0067 20.5 6.0 53 70-122 18-70 (75)
85 PF07290 DUF1449: Protein of u 24.2 4.9E+02 0.011 23.6 8.3 26 77-102 8-33 (202)
86 PF04865 Baseplate_J: Baseplat 23.6 4.3E+02 0.0093 24.1 8.2 53 327-382 120-173 (243)
87 PF10002 DUF2243: Predicted me 23.6 3.8E+02 0.0082 22.9 6.9 57 101-166 43-99 (143)
88 PRK02935 hypothetical protein; 23.2 2.3E+02 0.0051 22.8 5.2 20 181-200 43-62 (110)
89 PF00873 ACR_tran: AcrB/AcrD/A 22.4 1.5E+02 0.0034 33.6 5.8 89 293-384 9-112 (1021)
90 PRK00341 hypothetical protein; 22.1 3.7E+02 0.008 20.9 6.2 59 326-389 29-88 (91)
91 PRK10568 periplasmic protein; 21.9 1.8E+02 0.0038 26.3 5.1 34 316-349 89-123 (203)
92 KOG0569 Permease of the major 21.8 5.4E+02 0.012 26.7 9.1 23 108-130 310-332 (485)
93 PF07787 DUF1625: Protein of u 21.3 4E+02 0.0087 24.7 7.5 31 142-172 181-211 (248)
94 COG4331 Predicted membrane pro 21.3 4.3E+02 0.0093 22.6 6.6 47 79-128 111-157 (167)
95 PRK05812 secD preprotein trans 20.9 7.4E+02 0.016 25.8 9.9 29 100-128 324-352 (498)
96 COG2215 ABC-type uncharacteriz 20.9 7.7E+02 0.017 23.9 16.1 16 144-159 94-109 (303)
97 KOG3491 Predicted membrane pro 20.8 2E+02 0.0043 20.5 3.8 33 128-168 28-60 (65)
98 TIGR00400 mgtE Mg2+ transporte 20.8 9E+02 0.019 24.6 13.2 50 112-161 327-376 (449)
99 PF04865 Baseplate_J: Baseplat 20.7 3.5E+02 0.0075 24.7 6.9 61 321-383 159-222 (243)
100 PF03147 FDX-ACB: Ferredoxin-f 20.7 4E+02 0.0087 20.5 7.4 64 325-388 17-91 (94)
101 COG3978 Acetolactate synthase 20.4 4E+02 0.0087 20.4 7.1 61 322-393 11-75 (86)
102 KOG2877 sn-1,2-diacylglycerol 20.3 8.1E+02 0.017 24.6 9.4 30 250-279 108-137 (389)
103 PF02790 COX2_TM: Cytochrome C 20.1 3.7E+02 0.008 19.9 7.3 33 129-161 49-81 (84)
No 1
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-54 Score=407.21 Aligned_cols=277 Identities=32% Similarity=0.606 Sum_probs=262.9
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHhheecChHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcCcchHHHHHHH
Q 016028 69 ERSKSAIKLFCLIIFSLIAMVVEVVGGFKANSLAVMTDAAHLLTDIAGFSISLFAVWASGWNATSQYSFGFNRFEILGAL 148 (396)
Q Consensus 69 ~~~~~~~~l~~~l~~n~~~~v~~l~~g~~s~S~aL~aDa~hsl~D~~s~~i~l~a~~~s~k~~~~~~pfG~~R~E~l~~l 148 (396)
.+.+.+|++++++++|++|+++|+++|+++||+||+||++||+.|+++.++++++.++++|+++++|||||.|+|.|+++
T Consensus 16 ~~~~~~r~l~~~~~L~~~f~~iE~i~g~~s~SlaLLADa~Hml~D~~al~lal~A~~~a~r~~~~~~TfGy~R~eiLaa~ 95 (296)
T COG1230 16 DNPRNERRLLIALLLNLAFMLIEIIGGLLTGSLALLADALHMLSDALALLLALIAIKLARRPATKRFTFGYKRLEILAAF 95 (296)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccHhHHHHHHHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 016028 149 VSVQLIWLISGILVYEAVDRIVHKSPTVNGQLMFGVAAFGFLINIIMVTCIGHDHAHHACGHNHHIGGHVHGDDHGPHHE 228 (396)
Q Consensus 149 i~~~~l~~~~~~l~~esi~~li~~~~~~~~~~~~~i~~~~lv~n~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 228 (396)
+++++++.+++++++|+++||.+|. +++...|++++++|+++|+++++.+.++
T Consensus 96 ~nav~Li~~s~~I~~EAi~R~~~P~-~i~~~~ml~va~~GL~vN~~~a~ll~~~-------------------------- 148 (296)
T COG1230 96 LNALLLIVVSLLILWEAIQRLLAPP-PIHYSGMLVVAIIGLVVNLVSALLLHKG-------------------------- 148 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCC-CCCccchHHHHHHHHHHHHHHHHHhhCC--------------------------
Confidence 9999999999999999999999997 5556999999999999999999999742
Q ss_pred cchhhhhhhhcccccCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHhhH
Q 016028 229 GEKLCAATEENQTNLESNSPIETKMLNINLQGAYLHVMADLIQSAGVMIAGLILWVKPGWSIVDLSCTLIFAAFALSTTV 308 (396)
Q Consensus 229 ~e~~~~~~~~~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~l~s~~vlva~~l~~~~~~~~~~D~i~siii~~~i~~~~~ 308 (396)
+.+|.|+++.++|.++|+++|+++++++++++++ +|+|+||+++++++++++..++
T Consensus 149 -----------------------~~~~lN~r~a~LHvl~D~Lgsv~vIia~i~i~~~-~w~~~Dpi~si~i~~lil~~a~ 204 (296)
T COG1230 149 -----------------------HEENLNMRGAYLHVLGDALGSVGVIIAAIVIRFT-GWSWLDPILSIVIALLILSSAW 204 (296)
T ss_pred -----------------------CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCccchHHHHHHHHHHHHHHH
Confidence 2357899999999999999999999999999887 9999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCcccHHHHHHHHHcccCccceeeeEEEEeeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHhhCCC
Q 016028 309 PMLKTIFVILMERTPSEINVARLQRDLECIKGVQTIHDLHVWAITVGKLVLSCHVIAEPAVSSSEILDKIRDYCQKTHRI 388 (396)
Q Consensus 309 ~~~~~~~~~Ll~~sp~~~~~~~i~~~l~~~~~V~~v~~l~~~~~~~~~~~v~v~I~v~~~~~~~~i~~~i~~~l~~~~~v 388 (396)
+++|++..+|++.+|+..+.+++++.+.+.|||.++||+|+|+++++...+++|+++++..+.+++.+++++++.++|++
T Consensus 205 ~l~k~s~~iLle~~P~~id~~~~~~~l~~~~~v~~vhdlHvWsi~~~~~~~t~Hv~v~~~~~~~~~~~~~~~~l~~~~~I 284 (296)
T COG1230 205 PLLKESLNILLEGVPEGIDIDKVREALLRIPGVASVHDLHVWSITGGEHALTLHVVVDEVADADAALDQIVRRLLEKYGI 284 (296)
T ss_pred HHHHHHHHHHhhcCCCccCHHHHHHHHhcCCCccceeecccCCCCCCceeEEEEEEecCccchHHHHHHHHHHHhhhcCc
Confidence 99999999999999999999999999999999999999999999999999999999997777777899999999999999
Q ss_pred ceeEEeeC
Q 016028 389 YHVTVQIE 396 (396)
Q Consensus 389 ~~vtV~ve 396 (396)
.|+|||+|
T Consensus 285 ~hvTiQ~e 292 (296)
T COG1230 285 EHVTIQLE 292 (296)
T ss_pred ceEEEEec
Confidence 99999997
No 2
>KOG1482 consensus Zn2+ transporter [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.8e-53 Score=400.03 Aligned_cols=313 Identities=44% Similarity=0.753 Sum_probs=285.1
Q ss_pred CccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHHHHhheecChHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCC
Q 016028 53 SACIFSKQENNTLESTERSKSAIKLFCLIIFSLIAMVVEVVGGFKANSLAVMTDAAHLLTDIAGFSISLFAVWASGWNAT 132 (396)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~n~~~~v~~l~~g~~s~S~aL~aDa~hsl~D~~s~~i~l~a~~~s~k~~~ 132 (396)
..|+++.+.++...++++ ...|+|+++.++++.|++.|.++|+.+||+|+++||.|.+.|..+..++++++|.++||++
T Consensus 52 ~~c~~~~~~~~~~~~~~~-~~~r~L~~~~~l~l~fm~~E~vGg~~a~SLAImTDAaHlLsD~~sf~isl~slw~s~~pa~ 130 (379)
T KOG1482|consen 52 HHCHRHPDSCDSSDAKRR-AAERKLSIAAALCLVFMIGEVVGGYKANSLAIMTDAAHLLSDVASFIISLFSLWLSSRPAT 130 (379)
T ss_pred cccccCCCCCccchhhhh-hhhhhHHHHHHHHHHHHHHHHhCCeeccchhhhhcchHHHHHHHHHHHHHHHHHHccCCCC
Confidence 567776665555444333 3689999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCC
Q 016028 133 SQYSFGFNRFEILGALVSVQLIWLISGILVYEAVDRIVHKSPTVNGQLMFGVAAFGFLINIIMVTCIGHDHAHHACGHNH 212 (396)
Q Consensus 133 ~~~pfG~~R~E~l~~li~~~~l~~~~~~l~~esi~~li~~~~~~~~~~~~~i~~~~lv~n~~~~~~~~~~~~~~~~~~~~ 212 (396)
++.+|||.|+|.++++++.+.+|++.+.+++++++|+++++.+.++..|++++.+++++|.++.+++.+.. |+|.|+++
T Consensus 131 ~r~sfG~~R~Evlgal~Sv~~IW~~tgvLV~~Ai~Rl~s~~~ev~g~~m~i~a~~gv~vNiim~~vL~~~~-h~h~H~~~ 209 (379)
T KOG1482|consen 131 KRMSFGFHRAEVLGALVSVLLIWVVTGVLVYEAIQRLLSGDYEVNGGIMLITAAVGVAVNIIMGFVLHQSG-HGHSHGGS 209 (379)
T ss_pred CceecceehHHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCceeecceEEEEEeehhhhhhhhhhhhhcccC-CCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999997653 33333333
Q ss_pred CCCCCCCCCCCCCCCccchhhhhhhhcccccCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhh
Q 016028 213 HIGGHVHGDDHGPHHEGEKLCAATEENQTNLESNSPIETKMLNINLQGAYLHVMADLIQSAGVMIAGLILWVKPGWSIVD 292 (396)
Q Consensus 213 ~~~~h~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~l~s~~vlva~~l~~~~~~~~~~D 292 (396)
|.|+|.|.+++ . .|.|++|.+.|.+.|+++|+||++++.++|+.|+|.++|
T Consensus 210 ~s~g~~h~~~~--------------------------~---~n~nvraAyiHVlGDliQSvGV~iaa~Ii~f~P~~~i~D 260 (379)
T KOG1482|consen 210 HSHGHSHDHGE--------------------------E---LNLNVRAAFVHVLGDLIQSVGVLIAALIIYFKPEYKIAD 260 (379)
T ss_pred CCcCccccccc--------------------------c---cchHHHHHHHHHHHHHHHHHHHHhhheeEEecccceecC
Confidence 33333333222 0 288999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCCcccHHHHHHHHHcccCccceeeeEEEEeeCCeEEEEEEEEeCCCCCHH
Q 016028 293 LSCTLIFAAFALSTTVPMLKTIFVILMERTPSEINVARLQRDLECIKGVQTIHDLHVWAITVGKLVLSCHVIAEPAVSSS 372 (396)
Q Consensus 293 ~i~siii~~~i~~~~~~~~~~~~~~Ll~~sp~~~~~~~i~~~l~~~~~V~~v~~l~~~~~~~~~~~v~v~I~v~~~~~~~ 372 (396)
|+++++++++++.+..+++|+.+..||+.+|...+.+.+++.+..++||+.||++|+|.++.|+..+++||.++++.+.+
T Consensus 261 pICT~~FSiivl~TT~~i~rd~~~iLmE~~P~~~d~~~~~~~l~~iegV~~VHdLhIWsiTv~k~~ls~Hv~i~~~ad~~ 340 (379)
T KOG1482|consen 261 PICTFVFSIIVLGTTITILRDILGILMEGTPRNLDFDKVKKGLLSIEGVKAVHDLHIWSITVGKVALSVHLAIDSEADAE 340 (379)
T ss_pred chhhhhHHHHHHHhHHHHHHHHHHHHhcCCCccCcHHHHHHHHhhhcceeEEEEEEEEEEecCceEEEEEEeecCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCceeEEeeC
Q 016028 373 EILDKIRDYCQKTHRIYHVTVQIE 396 (396)
Q Consensus 373 ~i~~~i~~~l~~~~~v~~vtV~ve 396 (396)
++++++.++|+++|++.++|||+|
T Consensus 341 ~vL~~~~~~i~~~~~~~~vTiQie 364 (379)
T KOG1482|consen 341 EVLDEARSLIKRRYGISHVTIQIE 364 (379)
T ss_pred HHHHHHHHHHHhhcceEEEEEEec
Confidence 999999999999999999999997
No 3
>PRK03557 zinc transporter ZitB; Provisional
Probab=100.00 E-value=2.6e-51 Score=396.43 Aligned_cols=274 Identities=34% Similarity=0.552 Sum_probs=254.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhheecChHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcCcchHHHHHHHHHH
Q 016028 72 KSAIKLFCLIIFSLIAMVVEVVGGFKANSLAVMTDAAHLLTDIAGFSISLFAVWASGWNATSQYSFGFNRFEILGALVSV 151 (396)
Q Consensus 72 ~~~~~l~~~l~~n~~~~v~~l~~g~~s~S~aL~aDa~hsl~D~~s~~i~l~a~~~s~k~~~~~~pfG~~R~E~l~~li~~ 151 (396)
+..|++++++++|++++++|+++|+++||+||+|||+|++.|+++.++++++.+.++||+|++|||||+|+|++++++.+
T Consensus 16 ~~~r~~~~~~~~n~~l~i~k~~~g~~tgS~AllaDa~hsl~D~~~~~~~l~a~~~s~kp~d~~hpyG~~r~E~l~al~~~ 95 (312)
T PRK03557 16 NNARRLLYAFGVTAGFMLVEVIGGFLSGSLALLADAGHMLTDAAALLFALLAVQFSRRPPTIRHTFGWLRLTTLAAFVNA 95 (312)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchHHHHHHHHHHHH
Confidence 34788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCCCccch
Q 016028 152 QLIWLISGILVYEAVDRIVHKSPTVNGQLMFGVAAFGFLINIIMVTCIGHDHAHHACGHNHHIGGHVHGDDHGPHHEGEK 231 (396)
Q Consensus 152 ~~l~~~~~~l~~esi~~li~~~~~~~~~~~~~i~~~~lv~n~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~e~ 231 (396)
++|+++++++++||++++++|.+ .+..++++++++++++|.++++++++
T Consensus 96 ~~l~~~~~~i~~eai~~l~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~------------------------------ 144 (312)
T PRK03557 96 IALVVITILIVWEAIERFRTPRP-VAGGMMMAIAVAGLLANILSFWLLHH------------------------------ 144 (312)
T ss_pred HHHHHHHHHHHHHHHHHHcCCcc-ccchHHHHHHHHHHHHHHHHHHHHhc------------------------------
Confidence 99999999999999999998864 44567778889999999998887764
Q ss_pred hhhhhhhcccccCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHhhHHHH
Q 016028 232 LCAATEENQTNLESNSPIETKMLNINLQGAYLHVMADLIQSAGVMIAGLILWVKPGWSIVDLSCTLIFAAFALSTTVPML 311 (396)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~l~s~~vlva~~l~~~~~~~~~~D~i~siii~~~i~~~~~~~~ 311 (396)
.++.+|.+++++++|+++|+++|+++++++++.+++ +|+|+||++++++++++++.+++++
T Consensus 145 ------------------~~~~~s~~l~a~~~h~~~D~l~s~~vlv~~~~~~~~-g~~~~Dpi~~ilis~~i~~~~~~l~ 205 (312)
T PRK03557 145 ------------------GSEEKNLNVRAAALHVLGDLLGSVGAIIAALIIIWT-GWTPADPILSILVSVLVLRSAWRLL 205 (312)
T ss_pred ------------------ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCcchhHHHHHHHHHHHHHHHHHHH
Confidence 334567789999999999999999999999887765 8999999999999999999999999
Q ss_pred HHHHHHHhcCCCCcccHHHHHHHH-HcccCccceeeeEEEEeeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHhhCCCce
Q 016028 312 KTIFVILMERTPSEINVARLQRDL-ECIKGVQTIHDLHVWAITVGKLVLSCHVIAEPAVSSSEILDKIRDYCQKTHRIYH 390 (396)
Q Consensus 312 ~~~~~~Ll~~sp~~~~~~~i~~~l-~~~~~V~~v~~l~~~~~~~~~~~v~v~I~v~~~~~~~~i~~~i~~~l~~~~~v~~ 390 (396)
|+++..||+.+|++++.+++++.+ ++.|+|.++|++|+|+. |+++++++||.++++.+.+++.++++++|++++++.+
T Consensus 206 ~~~~~~Lld~~p~~~~~~~i~~~i~~~~~gV~~vh~l~~~~~-G~~~~v~~hv~v~~~~~~~~i~~~i~~~l~~~~~i~~ 284 (312)
T PRK03557 206 KESVNELLEGAPVSLDIAELKRRLCREIPEVRNVHHVHVWMV-GEKPVMTLHVQVIPPHDHDALLDRIQDYLMHHYQIEH 284 (312)
T ss_pred HHHHHHHHccCCCCCCHHHHHHHHHhcCCCceeEEEEEEEEe-CCeEEEEEEEEECCCCCHHHHHHHHHHHHHHhCCCCE
Confidence 999999999999988899999887 67999999999999998 5788999999999998999999999999999999999
Q ss_pred eEEeeC
Q 016028 391 VTVQIE 396 (396)
Q Consensus 391 vtV~ve 396 (396)
+|||+|
T Consensus 285 vtIh~e 290 (312)
T PRK03557 285 ATIQME 290 (312)
T ss_pred EEEEec
Confidence 999997
No 4
>PRK09509 fieF ferrous iron efflux protein F; Reviewed
Probab=100.00 E-value=2.2e-49 Score=381.56 Aligned_cols=275 Identities=17% Similarity=0.219 Sum_probs=255.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhheecChHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcCcchHHHHHHHHHH
Q 016028 72 KSAIKLFCLIIFSLIAMVVEVVGGFKANSLAVMTDAAHLLTDIAGFSISLFAVWASGWNATSQYSFGFNRFEILGALVSV 151 (396)
Q Consensus 72 ~~~~~l~~~l~~n~~~~v~~l~~g~~s~S~aL~aDa~hsl~D~~s~~i~l~a~~~s~k~~~~~~pfG~~R~E~l~~li~~ 151 (396)
..+|..++++++|++++++|+++|+++||++|+|||+|++.|+++.++++++.+.++||+|++|||||+|+|++++++.+
T Consensus 8 ~~~~~~~~~~~~n~~l~i~k~~~g~~sgS~allaDa~hsl~D~~~~~l~l~~~~~s~k~~d~~~pyG~~r~E~l~~l~~~ 87 (299)
T PRK09509 8 LVSRAAIAATAMASLLLLIKIFAWWYTGSVSLLAALVDSLVDIAASLTNLLVVRYSLQPADDEHTFGHGKAESLAALAQS 87 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCccHHHHHHHHHHHH
Confidence 34588899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCCCccch
Q 016028 152 QLIWLISGILVYEAVDRIVHKSPTVNGQLMFGVAAFGFLINIIMVTCIGHDHAHHACGHNHHIGGHVHGDDHGPHHEGEK 231 (396)
Q Consensus 152 ~~l~~~~~~l~~esi~~li~~~~~~~~~~~~~i~~~~lv~n~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~e~ 231 (396)
++++++++++++||++++++|++.....++++++++++++|.+++.++++.
T Consensus 88 ~~l~~~~~~~~~esi~~l~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~----------------------------- 138 (299)
T PRK09509 88 MFISGSALFLFLTGIQHLISPTPMNDPGVGIIVTLVALICTLILVTFQRWV----------------------------- 138 (299)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHH-----------------------------
Confidence 999999999999999999999866667777888999999999988777653
Q ss_pred hhhhhhhcccccCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHhhHHHH
Q 016028 232 LCAATEENQTNLESNSPIETKMLNINLQGAYLHVMADLIQSAGVMIAGLILWVKPGWSIVDLSCTLIFAAFALSTTVPML 311 (396)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~l~s~~vlva~~l~~~~~~~~~~D~i~siii~~~i~~~~~~~~ 311 (396)
.++.+|++++++++|+++|+++|++++++.++.++ +|+|+||++++++++++++.+++++
T Consensus 139 ------------------~~~~~s~~l~a~~~~~~~D~~~s~~vl~~~~~~~~--g~~~~D~i~aiii~~~il~~~~~i~ 198 (299)
T PRK09509 139 ------------------VRKTQSQAVRADMLHYQSDVMMNGAILLALGLSWY--GWHRADALFALGIGIYILYSALRMG 198 (299)
T ss_pred ------------------HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55678999999999999999999998888777655 8999999999999999999999999
Q ss_pred HHHHHHHhcCCCCcccHHHHHHHHHcccCccceeeeEEEEeeCCeEEEEEEEEeCCCCC---HHHHHHHHHHHHHhhCCC
Q 016028 312 KTIFVILMERTPSEINVARLQRDLECIKGVQTIHDLHVWAITVGKLVLSCHVIAEPAVS---SSEILDKIRDYCQKTHRI 388 (396)
Q Consensus 312 ~~~~~~Ll~~sp~~~~~~~i~~~l~~~~~V~~v~~l~~~~~~~~~~~v~v~I~v~~~~~---~~~i~~~i~~~l~~~~~v 388 (396)
+++...|+|++|+++..+++++.++++|+|.+++++|+|+. |+++++++||.++++++ .|++.+++++++++.++.
T Consensus 199 ~~~~~~Ll~~~~~~~~~~~I~~~i~~~~~v~~v~~l~~~~~-G~~~~v~v~i~v~~~~~~~e~h~i~~~ie~~l~~~~~~ 277 (299)
T PRK09509 199 YEAVQSLLDRALPDEERQEIIDIVTSWPGVSGAHDLRTRQS-GPTRFIQLHLEMEDNLPLVQAHMIADQVEQALLRRFPG 277 (299)
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHhCCCCcCceeeeeEee-CCeEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999985 56788999999999987 478999999999999887
Q ss_pred ceeEEeeC
Q 016028 389 YHVTVQIE 396 (396)
Q Consensus 389 ~~vtV~ve 396 (396)
.+++||+|
T Consensus 278 ~~v~ihve 285 (299)
T PRK09509 278 SDVIIHQD 285 (299)
T ss_pred CEEEEEeC
Confidence 78999987
No 5
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.2e-49 Score=379.80 Aligned_cols=279 Identities=22% Similarity=0.343 Sum_probs=265.0
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhheecChHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcCcchHHHHHH
Q 016028 68 TERSKSAIKLFCLIIFSLIAMVVEVVGGFKANSLAVMTDAAHLLTDIAGFSISLFAVWASGWNATSQYSFGFNRFEILGA 147 (396)
Q Consensus 68 ~~~~~~~~~l~~~l~~n~~~~v~~l~~g~~s~S~aL~aDa~hsl~D~~s~~i~l~a~~~s~k~~~~~~pfG~~R~E~l~~ 147 (396)
.+.+...+..+++++.|++++++|+++|+++||.||+|||+|+++|+++.++.++++++++||+|++|||||+|+|++++
T Consensus 6 ~~~~~~~~~~~~sl~~nl~l~~~K~~~g~~~gS~ALlADaihs~~D~~~si~~l~~l~~s~kp~d~~HpyGh~k~E~l~s 85 (304)
T COG0053 6 ERLKLVRRAALISLAVNLALALLKLIAGILTGSVALLADAIHSLSDIVASLIVLIGLRISSKPPDRDHPYGHGKAETLAS 85 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHH
Confidence 34455677788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 016028 148 LVSVQLIWLISGILVYEAVDRIVHKSPTVNGQLMFGVAAFGFLINIIMVTCIGHDHAHHACGHNHHIGGHVHGDDHGPHH 227 (396)
Q Consensus 148 li~~~~l~~~~~~l~~esi~~li~~~~~~~~~~~~~i~~~~lv~n~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 227 (396)
++.+++++++|+.++++++.+++.|.+..+..++++++++++++|..++.+.++.
T Consensus 86 l~~~~~i~~~g~~i~~~a~~~~~~~~~~~~~~~~~~v~l~s~~~~~~l~~~~~~~------------------------- 140 (304)
T COG0053 86 LIVSILIFAAGFEILLEAIKRLISPQPVEPPLLALGVALISIVIKEALYRYLRRV------------------------- 140 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHH-------------------------
Confidence 9999999999999999999999999888889999999999999999999998864
Q ss_pred ccchhhhhhhhcccccCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHhh
Q 016028 228 EGEKLCAATEENQTNLESNSPIETKMLNINLQGAYLHVMADLIQSAGVMIAGLILWVKPGWSIVDLSCTLIFAAFALSTT 307 (396)
Q Consensus 228 ~~e~~~~~~~~~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~l~s~~vlva~~l~~~~~~~~~~D~i~siii~~~i~~~~ 307 (396)
+++.+|+.+.++++|+++|+++|++++++.+. .++ ||+|+||+++++|+++|++.+
T Consensus 141 ----------------------~kk~~S~aL~Ada~h~~sD~~ts~~~lvgl~~-~~~-g~~~lD~i~a~~I~~~Il~~~ 196 (304)
T COG0053 141 ----------------------GKKTNSQALIADALHHRSDVLTSLAVLVGLLG-SLL-GWPWLDPLAALLISLYILKTG 196 (304)
T ss_pred ----------------------HHHhCCHHHHHHhHHHHHHHHHHHHHHHHHHH-HHh-CcHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999994 444 899999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCcccHHHHHHHHHcccCccceeeeEEEEeeCCeEEEEEEEEeCCCCC---HHHHHHHHHHHHHh
Q 016028 308 VPMLKTIFVILMERTPSEINVARLQRDLECIKGVQTIHDLHVWAITVGKLVLSCHVIAEPAVS---SSEILDKIRDYCQK 384 (396)
Q Consensus 308 ~~~~~~~~~~Ll~~sp~~~~~~~i~~~l~~~~~V~~v~~l~~~~~~~~~~~v~v~I~v~~~~~---~~~i~~~i~~~l~~ 384 (396)
++++|+++..|||+.+++++.+++++.+.+.+||.++|+++++. .|+++++++|+++||+++ +|++.+++++++++
T Consensus 197 ~~~~~~s~~~L~d~~~~~~~~~~i~~~i~~~~~V~~v~~lr~R~-~G~~~~id~~i~v~~~ls~~eah~I~~~ie~~i~~ 275 (304)
T COG0053 197 FRLFKESVNELMDAALDPEDLEKIRAIILSVPGVKGVHDLRTRK-SGSRIFIDVHIEVDPDLSLEEAHEIADEVEKRIKK 275 (304)
T ss_pred HHHHHHHHHHHhCcCCCHHHHHHHHHHHhcCCcceeeecceeee-eCCeEEEEEEEEECCCCChHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999995 688999999999999998 58999999999999
Q ss_pred hCC-CceeEEeeC
Q 016028 385 THR-IYHVTVQIE 396 (396)
Q Consensus 385 ~~~-v~~vtV~ve 396 (396)
.++ +.+++||+|
T Consensus 276 ~~~~~~~v~Ihve 288 (304)
T COG0053 276 EFPKVADVTIHVE 288 (304)
T ss_pred hcCCCceEEEEec
Confidence 998 999999987
No 6
>TIGR01297 CDF cation diffusion facilitator family transporter. This model describes a broadly distributed family of transporters, a number of which have been shown to transport divalent cations of cobalt, cadmium and/or zinc. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.
Probab=100.00 E-value=2.9e-46 Score=354.85 Aligned_cols=261 Identities=32% Similarity=0.591 Sum_probs=245.0
Q ss_pred HHHHHHHhheecChHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016028 87 AMVVEVVGGFKANSLAVMTDAAHLLTDIAGFSISLFAVWASGWNATSQYSFGFNRFEILGALVSVQLIWLISGILVYEAV 166 (396)
Q Consensus 87 ~~v~~l~~g~~s~S~aL~aDa~hsl~D~~s~~i~l~a~~~s~k~~~~~~pfG~~R~E~l~~li~~~~l~~~~~~l~~esi 166 (396)
++++|+++|+++||.+|+|||+|++.|+++.++++++.+.++||++++|||||+|+|++++++.+++++++++.++++++
T Consensus 2 l~~~k~~~g~~~~S~allada~~s~~D~~~~~~~l~~~~~~~~~~d~~~pyG~~r~E~l~~l~~~~~l~~~~~~~~~~si 81 (268)
T TIGR01297 2 LMLIKIVGGLLSGSLALLADAIHSLSDVAASAIALLALRISRRPADERHPFGHGRAEILAALLNGLFLVVVALFILYEAI 81 (268)
T ss_pred EEEeehHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCcchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhhhcccccCCC
Q 016028 167 DRIVHKSPTVNGQLMFGVAAFGFLINIIMVTCIGHDHAHHACGHNHHIGGHVHGDDHGPHHEGEKLCAATEENQTNLESN 246 (396)
Q Consensus 167 ~~li~~~~~~~~~~~~~i~~~~lv~n~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~e~~~~~~~~~~~~~~~~ 246 (396)
+++++|+++++..++++++++++++|+++++++++.
T Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-------------------------------------------- 117 (268)
T TIGR01297 82 ERLINPEPEIDGGTMLIVAIVGLIVNLILALYLHRV-------------------------------------------- 117 (268)
T ss_pred HHHhCCCCcccchhHHHHHHHHHHHHHHHHHHHHHh--------------------------------------------
Confidence 999998766777888899999999999999998754
Q ss_pred CcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCCcc
Q 016028 247 SPIETKMLNINLQGAYLHVMADLIQSAGVMIAGLILWVKPGWSIVDLSCTLIFAAFALSTTVPMLKTIFVILMERTPSEI 326 (396)
Q Consensus 247 ~~~~~~~~s~~l~a~~~~~~~D~l~s~~vlva~~l~~~~~~~~~~D~i~siii~~~i~~~~~~~~~~~~~~Ll~~sp~~~ 326 (396)
+++.+|+++++++.|+++|+++|++++++..+.++. |+|+||++++++++++++.++++++++...|+|.+|+++
T Consensus 118 ---~~~~~s~~l~a~~~~~~~D~~~s~~vli~~~~~~~~--~~~~D~l~~i~i~~~i~~~~~~l~~~~~~~Ll~~~~~~~ 192 (268)
T TIGR01297 118 ---GHRLGSLALRAAALHVLSDALSSVGVLIGALLIYFG--WHWADPIAALLISLLILYTAFRLLKESINVLLDAAPDEE 192 (268)
T ss_pred ---CccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcc
Confidence 556789999999999999999999999999988774 889999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHcccCccceeeeEEEEeeCCeEEEEEEEEeCCCCCH---HHHHHHHHHHHHhh-CCCceeEEeeC
Q 016028 327 NVARLQRDLECIKGVQTIHDLHVWAITVGKLVLSCHVIAEPAVSS---SEILDKIRDYCQKT-HRIYHVTVQIE 396 (396)
Q Consensus 327 ~~~~i~~~l~~~~~V~~v~~l~~~~~~~~~~~v~v~I~v~~~~~~---~~i~~~i~~~l~~~-~~v~~vtV~ve 396 (396)
..+++++.+++.+||.+++++|+|+.+++++++++||+++++++. |++.++++++++++ +++.++|||+|
T Consensus 193 ~~~~i~~~i~~~~~v~~v~~~~~~~~G~~~~~v~~~v~v~~~~~~~~ah~i~~~i~~~i~~~~~~v~~v~ih~e 266 (268)
T TIGR01297 193 DLEEIKKAILSIPGVKGVHDLHIWRIGPGKLFLDVHVVVDPDLDLKQAHDIALEIEREILKRHPGIEHVTIQVE 266 (268)
T ss_pred cHHHHHHHHhcCCCcccceEeEEEEcCCCCEEEEEEEEECCCCChhHHHHHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 999999999999999999999999986669999999999999874 78999999998876 67999999997
No 7
>KOG1483 consensus Zn2+ transporter ZNT1 and related Cd2+/Zn2+ transporters (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.5e-46 Score=353.07 Aligned_cols=322 Identities=25% Similarity=0.473 Sum_probs=264.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhheecChHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcCcchHHHHHHHHHHH
Q 016028 73 SAIKLFCLIIFSLIAMVVEVVGGFKANSLAVMTDAAHLLTDIAGFSISLFAVWASGWNATSQYSFGFNRFEILGALVSVQ 152 (396)
Q Consensus 73 ~~~~l~~~l~~n~~~~v~~l~~g~~s~S~aL~aDa~hsl~D~~s~~i~l~a~~~s~k~~~~~~pfG~~R~E~l~~li~~~ 152 (396)
.+.++...+++.++||++|++.|+.++|+||++|++||+.|+++.++++++++.+++.++.+|||||.|.|.++++++++
T Consensus 7 k~~rli~~l~ltiiFfvLEli~gyv~~sLaLiadSfHML~dIiaLivaf~~ik~a~~~~~~k~tyGw~rAEilGalvN~i 86 (404)
T KOG1483|consen 7 KSLRLISVLVLTIIFFVLELITGYVTNSLALIADSFHMLNDIIALIVAFWAIKEAKRIPLQKYTYGWARAEILGALVNAI 86 (404)
T ss_pred cccceeehHHHHHHHHHhhhhhhcccchHHHHhhHHHHHHHHHHHHHHHHHHHhhhcCcccccCcchhHHHHHhhhhHHH
Confidence 35677788999999999999999999999999999999999999999999999999989999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHHHHHHhccC-CCCC-CCCCCCCCC-----------CCC
Q 016028 153 LIWLISGILVYEAVDRIVHKSPTVNGQLMFGVAAFGFLINIIMVTCIGHDH-AHHA-CGHNHHIGG-----------HVH 219 (396)
Q Consensus 153 ~l~~~~~~l~~esi~~li~~~~~~~~~~~~~i~~~~lv~n~~~~~~~~~~~-~~~~-~~~~~~~~~-----------h~~ 219 (396)
++..+++.++.|+++|+++|....++..++.+++++++.|.+.++.+...+ .|.| .|+|+|... |+|
T Consensus 87 fl~alc~~I~~EA~~R~I~p~~i~~P~~vL~vgi~gLi~Nvlg~~lfhdhg~~h~~~~H~h~hg~~~~~~~~~~~~~~~~ 166 (404)
T KOG1483|consen 87 FLTALCVSILIEAIERIIEPHHIENPILVLYVGIIGLISNVLGLFLFHDHGHDHGHGVHGHSHGGMKGFIGLNLTHLHSH 166 (404)
T ss_pred HHHHHHHHHHHHHHHhhcCCccccCceeeehhhHHHHHHHHHHhheeeccCcccCCcCCCCCCCccccchhhhccCCchh
Confidence 999999999999999999998888899999999999999999988875321 1111 122222111 111
Q ss_pred CCCCC---CCCc------cc-hhhhhhhhc-c-cccC------------CCCcccccccchhhHHHHHHHHHHHHHHHHH
Q 016028 220 GDDHG---PHHE------GE-KLCAATEEN-Q-TNLE------------SNSPIETKMLNINLQGAYLHVMADLIQSAGV 275 (396)
Q Consensus 220 ~~~~~---~~~~------~e-~~~~~~~~~-~-~~~~------------~~~~~~~~~~s~~l~a~~~~~~~D~l~s~~v 275 (396)
..+++ ++.. .+ .+......+ + ...+ ......++..+.|+++.++|.+.|++.+++|
T Consensus 167 ~~G~~t~~~~~d~~~~~~p~~~l~~~~~~N~~~~s~pv~~~~S~~r~~~~~~~~e~~~~~lnmhGv~LhvL~Dalg~I~V 246 (404)
T KOG1483|consen 167 AIGCNTLAKQLDTPLGPGPNAHLSGVMSQNLDGSSTPVQNHGSLSRDDAREKTEEKLDRNLNMHGVFLHVLGDALGSIIV 246 (404)
T ss_pred ccCCcchhhccccCCCCcchhhhccccccCCCCCCCccccCCcccccchhhhhhhhhhccccccceeeeeecccccceEE
Confidence 11110 0000 00 011111111 0 0000 0111225567899999999999999999999
Q ss_pred HHHHHHHHhccCC---chhhhHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCCcccHHHHHHHHHcccCccceeeeEEEEe
Q 016028 276 MIAGLILWVKPGW---SIVDLSCTLIFAAFALSTTVPMLKTIFVILMERTPSEINVARLQRDLECIKGVQTIHDLHVWAI 352 (396)
Q Consensus 276 lva~~l~~~~~~~---~~~D~i~siii~~~i~~~~~~~~~~~~~~Ll~~sp~~~~~~~i~~~l~~~~~V~~v~~l~~~~~ 352 (396)
+++++.+|.+ +| .|+||+.++++..+++++++|++|++..+|+|.+|...+.+++++.+.++|||.+|||+|+|++
T Consensus 247 i~~A~~v~~t-~~~~~~y~DP~lsi~~~~ii~~sa~pl~k~s~liLLq~~P~~i~ld~v~~~l~~~~gv~~vh~lhvWqL 325 (404)
T KOG1483|consen 247 IVSALFVYKT-EYSWAYYLDPILSIVLTVIILFSAYPLLKESALILLQTTPGSIDLDIVEKDLLTVPGVISVHDLHVWQL 325 (404)
T ss_pred EEEEEEEEec-ceehhhhcCchHHHHHHHHHHHhhhHHHHHHHHHHHHhCCCcccHHHHHHHHhcCcceeeeeeeeeeee
Confidence 9999998886 55 3899999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHhhCCCceeEEeeC
Q 016028 353 TVGKLVLSCHVIAEPAVSSSEILDKIRDYCQKTHRIYHVTVQIE 396 (396)
Q Consensus 353 ~~~~~~v~v~I~v~~~~~~~~i~~~i~~~l~~~~~v~~vtV~ve 396 (396)
++.++++++||.++.-..--++++++|+++ ..+||+.+|||+|
T Consensus 326 ~~~r~IAt~Hi~~~~p~~~~~~a~~ir~~f-h~~GIhs~TiqPe 368 (404)
T KOG1483|consen 326 AGSRIIATIHIQIQNPKEYMKIAEKIRSYF-HDQGIHSTTIQPE 368 (404)
T ss_pred ccceEEEEEEEEecCcHHHHHHHHHHHHHH-HhcCCcceeeccc
Confidence 999999999999997766679999999998 6889999999997
No 8
>KOG1484 consensus Putative Zn2+ transporter MSC2 (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.5e-44 Score=331.82 Aligned_cols=304 Identities=28% Similarity=0.528 Sum_probs=259.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhheecChHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcCcchHHHHHHHHH
Q 016028 71 SKSAIKLFCLIIFSLIAMVVEVVGGFKANSLAVMTDAAHLLTDIAGFSISLFAVWASGWNATSQYSFGFNRFEILGALVS 150 (396)
Q Consensus 71 ~~~~~~l~~~l~~n~~~~v~~l~~g~~s~S~aL~aDa~hsl~D~~s~~i~l~a~~~s~k~~~~~~pfG~~R~E~l~~li~ 150 (396)
.+.+|+++..+++|+.++.+|++.|.++||++|++|++||++|+.+..+.+++..+++||++.+||||+.|.|+++++++
T Consensus 31 ~~~sr~if~f~llnl~~~fv~l~y~~~snSlgLiSda~hm~FDctal~~gL~a~~is~~~~~~~fsyG~~r~evLagF~n 110 (354)
T KOG1484|consen 31 DKDSRSIFLFLLLNLAFMFVELFYGSWSNSLGLISDAFHMFFDCTALLAGLYASVISKWPANDKFSYGYGRIEVLAGFVN 110 (354)
T ss_pred CcchhhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHhhhhHHHHhcCCCccccCcchhHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHHHHHHhccCCCCCCC-CCCCCCCCCCCC--------
Q 016028 151 VQLIWLISGILVYEAVDRIVHKSPTVNGQLMFGVAAFGFLINIIMVTCIGHDHAHHACG-HNHHIGGHVHGD-------- 221 (396)
Q Consensus 151 ~~~l~~~~~~l~~esi~~li~~~~~~~~~~~~~i~~~~lv~n~~~~~~~~~~~~~~~~~-~~~~~~~h~~~~-------- 221 (396)
++++.+.+++++.|+++|+++| ++..+...++++..++++|++..+.+.+.|.|.|.. +|+...+|....
T Consensus 111 ~vflvl~a~fi~~Es~eRl~~p-pei~t~rllvVS~~gllvnLvGi~aF~h~~~h~hg~~~~s~~~~h~~~~~~~~~~~~ 189 (354)
T KOG1484|consen 111 GVFLVLIAFFIFSESVERLFDP-PEIHTNRLLVVSVLGLLVNLVGILAFSHGHAHSHGSHHHSSHSGHLALLFHSLLGVW 189 (354)
T ss_pred HHHHHHHHHHHhHHHHHHhcCc-hhcCCceeEEeeHHHHHHHHHHHHHhccccccccCCCCccccccchhcccccccccc
Confidence 9999999999999999999999 477888888999999999999999998765443322 222222222110
Q ss_pred CCCCCCccchhhhhhhhcccccCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhhHHHHHHHH
Q 016028 222 DHGPHHEGEKLCAATEENQTNLESNSPIETKMLNINLQGAYLHVMADLIQSAGVMIAGLILWVKPGWSIVDLSCTLIFAA 301 (396)
Q Consensus 222 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~l~s~~vlva~~l~~~~~~~~~~D~i~siii~~ 301 (396)
+.+.+.+.. ..-..+.++....+|.++|.+.|+|++++..+..++ +|.++||+|+++|++
T Consensus 190 ~~~~~~~~~-------------------i~g~~~~~m~gifLHVLaDtlgSvGviist~Li~~~-gw~~aDpicsllIai 249 (354)
T KOG1484|consen 190 DLHHHAHGH-------------------IHGHSHENMPGIFLHVLADTLGSVGVIISTLLIKLF-GWMIADPICSLLIAI 249 (354)
T ss_pred ccccccccc-------------------cCCcccccccchhHHHHHHHhcchHHHHHHHHHHhc-CccchhHHHHHHHHH
Confidence 000000000 111233445588999999999999999999998876 999999999999999
Q ss_pred HHHHhhHHHHHHHHHHHhcCCCCcc--cHHHHHHHHHcccCccceeeeEEEEeeCCeEEEEEEEEeCCCCCHHHHHHHHH
Q 016028 302 FALSTTVPMLKTIFVILMERTPSEI--NVARLQRDLECIKGVQTIHDLHVWAITVGKLVLSCHVIAEPAVSSSEILDKIR 379 (396)
Q Consensus 302 ~i~~~~~~~~~~~~~~Ll~~sp~~~--~~~~i~~~l~~~~~V~~v~~l~~~~~~~~~~~v~v~I~v~~~~~~~~i~~~i~ 379 (396)
+|+.+.+|++|++..+||+++||+. ..++..+.+.+.+||.++.+.|+|+++.|.++.++|+.+.++.+.+.+...+.
T Consensus 250 lIf~sv~PL~k~s~~iLLq~tPp~~~~~l~~cl~~Is~~~gV~~v~~~hFWt~~~g~~vGtlhl~V~~dade~~vl~~V~ 329 (354)
T KOG1484|consen 250 LIFLSVLPLLKYSGKILLQRTPPHLENSLKQCLRQISTLDGVTSVQNPHFWTLESGSVVGTLHLQVSSDADEQSVLAHVT 329 (354)
T ss_pred HHHHHHHHHHHHHHHHHHhcCChhhhhHHHHHHHHhhccccceeeccCceeeccCCceEEEEEEEEecCcchhHHHHHHH
Confidence 9999999999999999999999876 33456666666899999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCceeEEeeC
Q 016028 380 DYCQKTHRIYHVTVQIE 396 (396)
Q Consensus 380 ~~l~~~~~v~~vtV~ve 396 (396)
+++ +..+|.+.|||+|
T Consensus 330 ~~~-~~~gV~~ltvQv~ 345 (354)
T KOG1484|consen 330 RKL-EDAGVKDLTVQVE 345 (354)
T ss_pred HHH-HhcceeEEEEEEe
Confidence 988 4668999999986
No 9
>KOG1485 consensus Mitochondrial Fe2+ transporter MMT1 and related transporters (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.4e-43 Score=335.35 Aligned_cols=272 Identities=13% Similarity=0.168 Sum_probs=244.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhheecChHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcCcchHHHHHHHHHH
Q 016028 72 KSAIKLFCLIIFSLIAMVVEVVGGFKANSLAVMTDAAHLLTDIAGFSISLFAVWASGWNATSQYSFGFNRFEILGALVSV 151 (396)
Q Consensus 72 ~~~~~l~~~l~~n~~~~v~~l~~g~~s~S~aL~aDa~hsl~D~~s~~i~l~a~~~s~k~~~~~~pfG~~R~E~l~~li~~ 151 (396)
.+.+..|+++++|+.+++.|.++|+.+||+|++||++|++.|+++.++.++..+.++|+++.+||+|++|+|+++.+.++
T Consensus 112 ~~~~~~~i~l~~Nigl~vaK~~as~~sgS~aIiAsavdSl~Dl~s~fvll~s~~~~~k~~~~~YP~G~~r~EtvG~i~~S 191 (412)
T KOG1485|consen 112 AERRAAWIGLAANIGLAVAKVVASYLSGSMAIIASAVDSLSDLVSGFVLLFSLRAAKKKPTYEYPRGRGRVETVGLIAVS 191 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhCCCCCCcccchhHHHHH
Confidence 44666788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCC-------C----CcchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCC
Q 016028 152 QLIWLISGILVYEAVDRIVHKSP-------T----VNGQLMFGVAAFGFLINIIMVTCIGHDHAHHACGHNHHIGGHVHG 220 (396)
Q Consensus 152 ~~l~~~~~~l~~esi~~li~~~~-------~----~~~~~~~~i~~~~lv~n~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 220 (396)
.+|.++++.+++++++++..|.. + .+..|++++++....+++..+++|+
T Consensus 192 ~iMa~agv~ii~sSl~~i~~~~~~~~~~~~~q~~~~~a~~~i~i~is~~~vk~~l~~~c~-------------------- 251 (412)
T KOG1485|consen 192 VIMAMAGVQIIWSSLRLIVGPHAIGHHHNPSQLIFINALWLIAIMISAKEVKLRLTLYCA-------------------- 251 (412)
T ss_pred HHHHHHHHHHHHHhHHhhhcccccccccCchhhcccchhhhheehhhHHHHHHHHHHHHH--------------------
Confidence 99999999999999999887311 1 1223777778888888888888875
Q ss_pred CCCCCCCccchhhhhhhhcccccCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhhHHHHHHH
Q 016028 221 DDHGPHHEGEKLCAATEENQTNLESNSPIETKMLNINLQGAYLHVMADLIQSAGVMIAGLILWVKPGWSIVDLSCTLIFA 300 (396)
Q Consensus 221 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~l~s~~vlva~~l~~~~~~~~~~D~i~siii~ 300 (396)
++.+|..++++++|+|+|+++|..+++|+.+.+++ |+|+||++|++++
T Consensus 252 ------------------------------~~~ns~iv~a~A~dHr~D~lTn~vaLva~~la~~~--~~~lDP~gailVS 299 (412)
T KOG1485|consen 252 ------------------------------IKTNSNIVRANAWDHRNDVLTNSVALVAASLAYYY--NYWLDPIGAILVS 299 (412)
T ss_pred ------------------------------HhcCcHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh--hhcccchhhhhhh
Confidence 34566889999999999999999999999999885 7899999999999
Q ss_pred HHHHHhhHHHHHHHHHHHhcCCCCcccHHHHHHHHHcc-cCccceeeeEEEEeeCCeEEEEEEEEeCCCCC---HHHHHH
Q 016028 301 AFALSTTVPMLKTIFVILMERTPSEINVARLQRDLECI-KGVQTIHDLHVWAITVGKLVLSCHVIAEPAVS---SSEILD 376 (396)
Q Consensus 301 ~~i~~~~~~~~~~~~~~Ll~~sp~~~~~~~i~~~l~~~-~~V~~v~~l~~~~~~~~~~~v~v~I~v~~~~~---~~~i~~ 376 (396)
.+++++|.+...+++..|.|++.+++..+++.+...+. +.+..++.++.+.+ +..+.+++||+++++++ +|++.+
T Consensus 300 ~~ii~t~~~t~~~~i~~Lvg~~a~pe~L~~~~~~~l~~~~~i~~idtv~~y~~-g~~~~Vev~ivl~~~~~l~~ah~i~E 378 (412)
T KOG1485|consen 300 TYIIYTGGRTGLENIKELVGRSAPPEYLEIITYLILQHGKLIKHIDTVRAYTF-GSHYFVEVHIVLDEDLSLSVAHDIGE 378 (412)
T ss_pred eehhhhhhHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcCccccceeeeeecc-cceEEEEEeeecCCCCccHHHHHHHH
Confidence 99999999999999999999988888888888877554 68999999999987 56899999999999998 589999
Q ss_pred HHHHHHHhhCCCceeEEeeC
Q 016028 377 KIRDYCQKTHRIYHVTVQIE 396 (396)
Q Consensus 377 ~i~~~l~~~~~v~~vtV~ve 396 (396)
.+++.|+....+++++||+|
T Consensus 379 ~lq~~ie~l~ever~fvh~d 398 (412)
T KOG1485|consen 379 TLQKKIELLPEVERAFVHID 398 (412)
T ss_pred HHHHHHhhcchheeeeeecC
Confidence 99999999888999999986
No 10
>PF01545 Cation_efflux: Cation efflux family; InterPro: IPR002524 Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt. These proteins are considered to be efflux pumps that remove these ions from cells [, ], however others are implicated in ion uptake []. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3BYP_B 3BYR_A 3H90_B 2QFI_B 2ZZT_A.
Probab=100.00 E-value=2.2e-44 Score=344.63 Aligned_cols=272 Identities=29% Similarity=0.509 Sum_probs=239.6
Q ss_pred HHHHHHHHHHHHHHHHHhheecChHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcCcchHHHHHHHHHHHHHHH
Q 016028 77 LFCLIIFSLIAMVVEVVGGFKANSLAVMTDAAHLLTDIAGFSISLFAVWASGWNATSQYSFGFNRFEILGALVSVQLIWL 156 (396)
Q Consensus 77 l~~~l~~n~~~~v~~l~~g~~s~S~aL~aDa~hsl~D~~s~~i~l~a~~~s~k~~~~~~pfG~~R~E~l~~li~~~~l~~ 156 (396)
|++++++|++++++|+++|+++||.++++|++|++.|+++.++++++.+.+.||++++||||++|+|++++++.++++++
T Consensus 1 L~i~~~~~~~~~~~~~~~~~~t~S~al~~d~~~sl~d~~~~~~~l~~~~~~~~~~~~~~pfG~~r~e~l~~~~~~~~l~~ 80 (284)
T PF01545_consen 1 LIISLILNLILAVVKIIAGIITGSLALLADGLHSLADAISLLISLFALRIASKPPDKRYPFGYGRLEPLAALIVSILLIF 80 (284)
T ss_dssp -HHHHHHHCCTHHCTTCSS-SSSSS---SCCCHHHHHHHHHHHHHHHHHHHTSS-SSSSSSSSTTHHHHHHHHHHHHHHH
T ss_pred CeeeHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccchhhhhhHhhhhhhhhHhh
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhh
Q 016028 157 ISGILVYEAVDRIVHKSPTVNGQLMFGVAAFGFLINIIMVTCIGHDHAHHACGHNHHIGGHVHGDDHGPHHEGEKLCAAT 236 (396)
Q Consensus 157 ~~~~l~~esi~~li~~~~~~~~~~~~~i~~~~lv~n~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~e~~~~~~ 236 (396)
+++.++++++++++++.+.....+++.++++++++|+++++++++.
T Consensus 81 ~~~~~~~~si~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~---------------------------------- 126 (284)
T PF01545_consen 81 LGLFLIVESIQRLISPHEPSPPGIVLIVALVSIIVNLLLAWYLRRV---------------------------------- 126 (284)
T ss_dssp HHHHHHHHHTTTSSSSSSSSTTTS-THHHHHHHHHHHHHHHHHHHH----------------------------------
T ss_pred hHHHHHHHHhhcccccccchhhhhhhhhhhhhhhHHHHHHHHHhhc----------------------------------
Confidence 9999999999999999766666666777999999999999999863
Q ss_pred hhcccccCCCCcccc--cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc-hhhhHHHHHHHHHHHHhhHHHHHH
Q 016028 237 EENQTNLESNSPIET--KMLNINLQGAYLHVMADLIQSAGVMIAGLILWVKPGWS-IVDLSCTLIFAAFALSTTVPMLKT 313 (396)
Q Consensus 237 ~~~~~~~~~~~~~~~--~~~s~~l~a~~~~~~~D~l~s~~vlva~~l~~~~~~~~-~~D~i~siii~~~i~~~~~~~~~~ 313 (396)
++ +..++++++.+.++++|.+.|++++++.++.++. +|. |+||++++++++++++.+++++++
T Consensus 127 -------------~~~~~~~s~~l~~~~~~~~~d~~~s~~v~i~~~~~~~~-~~~~~~D~v~~l~i~~~i~~~~~~~~~~ 192 (284)
T PF01545_consen 127 -------------GKRLQRRSPALRADALHSLIDVLSSLAVLISLLLAYLG-PWFWYADPVASLLIALFILYSGYPLIKE 192 (284)
T ss_dssp -------------HHHS---SHHHHHHHHHHHHHTS-SSTS-SSSTSSSTT--STS-SSHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------ccccccccccchhhhhhcccchhHHHHHHHHHHHHHHH-hcccccchhhhhHHHHHHhhhhhhchhh
Confidence 22 3348999999999999999999999999988876 454 599999999999999999999999
Q ss_pred HHHHHhcCCCCcccHHHHHHHHHcccCccceeeeEEEEeeCCeEEEEEEEEeCCCCC---HHHHHHHHHHHHHhhC-CCc
Q 016028 314 IFVILMERTPSEINVARLQRDLECIKGVQTIHDLHVWAITVGKLVLSCHVIAEPAVS---SSEILDKIRDYCQKTH-RIY 389 (396)
Q Consensus 314 ~~~~Ll~~sp~~~~~~~i~~~l~~~~~V~~v~~l~~~~~~~~~~~v~v~I~v~~~~~---~~~i~~~i~~~l~~~~-~v~ 389 (396)
+...|++++|+++..+++++.+++.|+|.+++++|+|+.+.+++.+++++.++++++ .+++++++++.+++++ ++.
T Consensus 193 ~~~~Ll~~~~~~~~~~~i~~~i~~~~~v~~v~~~~~~~~g~~~~~v~i~v~v~~~~~v~~~~~i~~~i~~~l~~~~~~i~ 272 (284)
T PF01545_consen 193 SIRILLDASPDPELVEKIRRIIESVPGVIEVHDLRVWQVGRNKYVVEIHVQVDPDMSVEEAHEIRERIEKRLREKFPGIY 272 (284)
T ss_dssp HHHHHTT-SHHHHHHHHHHHHHHHTSS-SEEEEEEEEEETT-EEEEEEEEEETTTSBHHHHHHHHHHHHHHHHHHSTTCE
T ss_pred hhcccccccccccchhHHHHhhccCCceEeccceEEEEecCCcEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCCcE
Confidence 999999999999999999999999999999999999998666999999999999997 4689999999999998 699
Q ss_pred eeEEeeC
Q 016028 390 HVTVQIE 396 (396)
Q Consensus 390 ~vtV~ve 396 (396)
++|||+|
T Consensus 273 ~v~I~~~ 279 (284)
T PF01545_consen 273 DVTIHIE 279 (284)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 9999986
No 11
>COG3965 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=99.94 E-value=5.4e-25 Score=197.88 Aligned_cols=269 Identities=14% Similarity=0.136 Sum_probs=231.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhheecChHHHHHhhHHHHHHHHHHHHHHHHHHHhc-CCCCCCCCcCcchHHHHHHH
Q 016028 70 RSKSAIKLFCLIIFSLIAMVVEVVGGFKANSLAVMTDAAHLLTDIAGFSISLFAVWASG-WNATSQYSFGFNRFEILGAL 148 (396)
Q Consensus 70 ~~~~~~~l~~~l~~n~~~~v~~l~~g~~s~S~aL~aDa~hsl~D~~s~~i~l~a~~~s~-k~~~~~~pfG~~R~E~l~~l 148 (396)
...+++.|..+++...+++...+++|..+||++++-||+.|+.|+....++++..+... +|.+.|||||+.-+|++.-.
T Consensus 15 ~~~eq~~L~~Si~~tvi~A~~GIi~GL~~gS~~IiFDGvYSl~da~mtllsL~vsrli~~~p~~~RF~~GfwhlEplvL~ 94 (314)
T COG3965 15 SSNEQLYLRISIAGTVIFAAFGIIWGLLSGSMSIIFDGVYSLIDAGMTLLSLLVSRLIAKDPRDARFPYGFWHLEPLVLA 94 (314)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhcceEEEeccHHHHHHHHHHHHHHHHHHHhccCCCccccCcchhhhhhhHhh
Confidence 34567888899999999999999999999999999999999999999999999999887 56667999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 016028 149 VSVQLIWLISGILVYEAVDRIVHKSPTVNGQLMFGVAAFGFLINIIMVTCIGHDHAHHACGHNHHIGGHVHGDDHGPHHE 228 (396)
Q Consensus 149 i~~~~l~~~~~~l~~esi~~li~~~~~~~~~~~~~i~~~~lv~n~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 228 (396)
+++.+++.++++.++.++..++++..+..+...+..++++...+..+++..+|-
T Consensus 95 ing~ll~ll~lyAlinAl~~l~dGGR~v~~~~ai~yt~~s~~~Ca~~~~~~~r~-------------------------- 148 (314)
T COG3965 95 INGTLLALLCLYALINALGSLLDGGREVEPGHAIAYTLVSVTGCAAIAWKLRRL-------------------------- 148 (314)
T ss_pred hccHHHHHHHHHHHHHHHHHHhcCCccccccHHHHHHHHHHHHHHHHHHHHHhh--------------------------
Confidence 999999999999999999999999989999999999999999999999998864
Q ss_pred cchhhhhhhhcccccCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CC----chhhhHHHHHHHHH
Q 016028 229 GEKLCAATEENQTNLESNSPIETKMLNINLQGAYLHVMADLIQSAGVMIAGLILWVKP--GW----SIVDLSCTLIFAAF 302 (396)
Q Consensus 229 ~e~~~~~~~~~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~l~s~~vlva~~l~~~~~--~~----~~~D~i~siii~~~ 302 (396)
+++..|+.+.++...|+-|...|..++++.+..|... .| +|+||+.-.+++++
T Consensus 149 ---------------------nrr~~s~lIald~kqW~Mst~lS~al~VaF~~a~~l~~T~~a~l~~Y~DPmvlaL~~~v 207 (314)
T COG3965 149 ---------------------NRRLKSPLIALDTKQWLMSTCLSAALFVAFAAAWLLAGTKFAHLVVYADPMVLALVCLV 207 (314)
T ss_pred ---------------------hccCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhcccCHHHHHHHHHh
Confidence 6778889999999999999999999999999988743 22 59999999999999
Q ss_pred HHHhhHHHHHHHHHHHhcCCCCcccHHHHHHHHHcccCccceeeeEEEEeeCC-eEEEEEEEEeCCCCCH------HHHH
Q 016028 303 ALSTTVPMLKTIFVILMERTPSEINVARLQRDLECIKGVQTIHDLHVWAITVG-KLVLSCHVIAEPAVSS------SEIL 375 (396)
Q Consensus 303 i~~~~~~~~~~~~~~Ll~~sp~~~~~~~i~~~l~~~~~V~~v~~l~~~~~~~~-~~~v~v~I~v~~~~~~------~~i~ 375 (396)
++...++.++.+.++.+.-+|+ +..+.++....++..-.+..+.+.|-...| ...+++|..+|++.++ ++|+
T Consensus 208 ~IplPlg~vk~al~eiLlmtP~-el~q~ies~~~~~v~k~~f~~~~~yvArVGr~l~IEi~fiip~~~~ar~Ved~d~Ir 286 (314)
T COG3965 208 FIPLPLGTVKSALREILLMTPN-ELQQSIESHAHEIVEKYGFPSYHVYVARVGRGLFIEIHFIIPRESDARNVEDWDDIR 286 (314)
T ss_pred eeeccHHHHHHHHHHHHhcCcH-HHHHHHHHHHHHHHHHhcCchHHHHHHHhccceEEEEEEEeCCccCCccchhHHHHH
Confidence 9999999999999999999998 557777776655433334444444432334 4789999999998763 4677
Q ss_pred HHHHHHHHhhC
Q 016028 376 DKIRDYCQKTH 386 (396)
Q Consensus 376 ~~i~~~l~~~~ 386 (396)
+++.+.|..+.
T Consensus 287 dei~~slg~~g 297 (314)
T COG3965 287 DEIGQSLGSLG 297 (314)
T ss_pred HHHHHHhhcCC
Confidence 77777776544
No 12
>KOG2802 consensus Membrane protein HUEL (cation efflux superfamily) [General function prediction only]
Probab=99.84 E-value=1.1e-20 Score=177.54 Aligned_cols=220 Identities=16% Similarity=0.164 Sum_probs=169.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhheecChHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcCcchHHHHHHHHHH
Q 016028 72 KSAIKLFCLIIFSLIAMVVEVVGGFKANSLAVMTDAAHLLTDIAGFSISLFAVWASGWNATSQYSFGFNRFEILGALVSV 151 (396)
Q Consensus 72 ~~~~~l~~~l~~n~~~~v~~l~~g~~s~S~aL~aDa~hsl~D~~s~~i~l~a~~~s~k~~~~~~pfG~~R~E~l~~li~~ 151 (396)
...|...+++++|++-+.+|..+++++||.+|+|+++||++|.+++++..++++.+.+.||..|||||+++.++.+++++
T Consensus 204 ~s~rvVatAi~iN~l~~~~Kfg~w~~tgShsmfAEaIHS~aD~~NQ~lLa~Gis~S~q~PD~lhPYGYsnmRyVsSLISg 283 (503)
T KOG2802|consen 204 GSGRVVATAICINGLNCFFKFGAWIYTGSHSMFAEAIHSLADTCNQLLLALGISKSVQTPDPLHPYGYSNMRYVSSLISG 283 (503)
T ss_pred CCCceehhHHHHHHHHHHHHhhHhhhcccHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCcccchhHHHHHHhc
Confidence 34566778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCCCccc
Q 016028 152 QLIWLISGIL-VYEAVDRIVHKSPTVNGQLMFGVAAFGFLINIIMVTCIGHDHAHHACGHNHHIGGHVHGDDHGPHHEGE 230 (396)
Q Consensus 152 ~~l~~~~~~l-~~esi~~li~~~~~~~~~~~~~i~~~~lv~n~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~e 230 (396)
+.++.++..+ ++.++..+++|+|.++..|+..+...+++.....++.-.+.-
T Consensus 284 vGIfc~G~GlSiyhGv~gLlhpePi~~l~~ay~il~gSl~~eGasllvAi~ev--------------------------- 336 (503)
T KOG2802|consen 284 VGIFCMGCGLSIYHGVMGLLHPEPIESLLWAYCILAGSLVSEGASLLVAINEV--------------------------- 336 (503)
T ss_pred cceeeecccchhhhccccccCCCCCcchHHHHHHHhhHHHhcchHHHHHHHHH---------------------------
Confidence 9888887775 899999999999988888988888888888777666643210
Q ss_pred hhhhhhhhcccccCCCCcccccccchhhHHHHH---------HHHHHHHHHHHHHHHHHHHHh--ccCCchhhhHHHHHH
Q 016028 231 KLCAATEENQTNLESNSPIETKMLNINLQGAYL---------HVMADLIQSAGVMIAGLILWV--KPGWSIVDLSCTLIF 299 (396)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~s~~l~a~~~---------~~~~D~l~s~~vlva~~l~~~--~~~~~~~D~i~siii 299 (396)
.+ +.+..+..++..-+ -...|...-.|+++|+....+ .+|.|+.|++++++|
T Consensus 337 --kr---------------~Ak~~gmSi~dYV~~~~DPs~nvVl~EDtAAVtGv~IAaa~m~lss~tgnPIyD~~GSivv 399 (503)
T KOG2802|consen 337 --KR---------------NAKAKGMSIYDYVMESRDPSTNVVLLEDTAAVTGVIIAAACMGLSSITGNPIYDSLGSIVV 399 (503)
T ss_pred --HH---------------HHHHcCCCHHHHHhhcCCCcceEEEecchHHHHHHHHHHHHHHHHHhcCCCCccccchHHH
Confidence 00 11111111111111 113455555555555444322 238999999999999
Q ss_pred HHHHHHhhHHHHHHHHHHHhcCCCCcccHHHHHHHHHcccCccceeeeEEEEeeCCeEEEEEEEEeCCCC
Q 016028 300 AAFALSTTVPMLKTIFVILMERTPSEINVARLQRDLECIKGVQTIHDLHVWAITVGKLVLSCHVIAEPAV 369 (396)
Q Consensus 300 ~~~i~~~~~~~~~~~~~~Ll~~sp~~~~~~~i~~~l~~~~~V~~v~~l~~~~~~~~~~~v~v~I~v~~~~ 369 (396)
+.++-.. +.+++|++.-.++.|++....+|.+++.+
T Consensus 400 GaLLGmV----------------------------------e~diyDvK~~diG~g~vRfKAE~DFdGr~ 435 (503)
T KOG2802|consen 400 GALLGMV----------------------------------ENDIYDVKATDIGLGKVRFKAEVDFDGRV 435 (503)
T ss_pred HHHHHHH----------------------------------HHhhhhccceeeccceeEEEEEeccCchh
Confidence 8765433 12257777777889999999999999865
No 13
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=98.10 E-value=2.3e-05 Score=75.67 Aligned_cols=90 Identities=21% Similarity=0.188 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHHHHHHhheecChHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcCcchHHHHHHHHHHHHHH
Q 016028 76 KLFCLIIFSLIAMVVEVVGGFKANSLAVMTDAAHLLTDIAGFSISLFAVWASGWNATSQYSFGFNRFEILGALVSVQLIW 155 (396)
Q Consensus 76 ~l~~~l~~n~~~~v~~l~~g~~s~S~aL~aDa~hsl~D~~s~~i~l~a~~~s~k~~~~~~pfG~~R~E~l~~li~~~~l~ 155 (396)
...++++++..+...+.-.|-.+||.+|.||+.|..+|+++++.+++++. +.. +||..++++++++.+++++
T Consensus 122 v~l~s~~~~~~l~~~~~~~~kk~~S~aL~Ada~h~~sD~~ts~~~lvgl~-~~~-------~g~~~lD~i~a~~I~~~Il 193 (304)
T COG0053 122 VALISIVIKEALYRYLRRVGKKTNSQALIADALHHRSDVLTSLAVLVGLL-GSL-------LGWPWLDPLAALLISLYIL 193 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHhHHHHHHHHHHHHHHHHHH-HHH-------hCcHHHHHHHHHHHHHHHH
Confidence 34466788899999999999999999999999999999999999999999 443 6899999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCC
Q 016028 156 LISGILVYEAVDRIVHKS 173 (396)
Q Consensus 156 ~~~~~l~~esi~~li~~~ 173 (396)
..++.++++++..+++..
T Consensus 194 ~~~~~~~~~s~~~L~d~~ 211 (304)
T COG0053 194 KTGFRLFKESVNELMDAA 211 (304)
T ss_pred HHHHHHHHHHHHHHhCcC
Confidence 999999999999999854
No 14
>TIGR01297 CDF cation diffusion facilitator family transporter. This model describes a broadly distributed family of transporters, a number of which have been shown to transport divalent cations of cobalt, cadmium and/or zinc. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.
Probab=97.90 E-value=0.00011 Score=69.48 Aligned_cols=91 Identities=23% Similarity=0.253 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHHHHHHhheecChHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcCcchHHHHHHHHHHHHHH
Q 016028 76 KLFCLIIFSLIAMVVEVVGGFKANSLAVMTDAAHLLTDIAGFSISLFAVWASGWNATSQYSFGFNRFEILGALVSVQLIW 155 (396)
Q Consensus 76 ~l~~~l~~n~~~~v~~l~~g~~s~S~aL~aDa~hsl~D~~s~~i~l~a~~~s~k~~~~~~pfG~~R~E~l~~li~~~~l~ 155 (396)
....++++|++++..+.-.|...+|.++.||+.|.+.|+++.+..+.+...+. ||+..+|++++++.+++++
T Consensus 99 ~~~~~~~v~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s~~vli~~~~~~--------~~~~~~D~l~~i~i~~~i~ 170 (268)
T TIGR01297 99 VAIVGLIVNLILALYLHRVGHRLGSLALRAAALHVLSDALSSVGVLIGALLIY--------FGWHWADPIAALLISLLIL 170 (268)
T ss_pred HHHHHHHHHHHHHHHHHHhCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHhHHHHHHHHHHHH
Confidence 34466788988888888889999999999999999999999999999988775 5688999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCC
Q 016028 156 LISGILVYEAVDRIVHKSP 174 (396)
Q Consensus 156 ~~~~~l~~esi~~li~~~~ 174 (396)
..++.++++++..+++..+
T Consensus 171 ~~~~~l~~~~~~~Ll~~~~ 189 (268)
T TIGR01297 171 YTAFRLLKESINVLLDAAP 189 (268)
T ss_pred HHHHHHHHHHHHHHhCCCC
Confidence 9999999999999998753
No 15
>PRK09509 fieF ferrous iron efflux protein F; Reviewed
Probab=97.83 E-value=0.00017 Score=69.61 Aligned_cols=89 Identities=26% Similarity=0.228 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHHHHHhheecChHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcCcchHHHHHHHHHHHHHHH
Q 016028 77 LFCLIIFSLIAMVVEVVGGFKANSLAVMTDAAHLLTDIAGFSISLFAVWASGWNATSQYSFGFNRFEILGALVSVQLIWL 156 (396)
Q Consensus 77 l~~~l~~n~~~~v~~l~~g~~s~S~aL~aDa~hsl~D~~s~~i~l~a~~~s~k~~~~~~pfG~~R~E~l~~li~~~~l~~ 156 (396)
..+++++|+++...+...+-.++|.++.||+.|...|+++++..+.+...+. +|+..++++++++.+++++.
T Consensus 121 ~~~~~v~~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s~~vl~~~~~~~--------~g~~~~D~i~aiii~~~il~ 192 (299)
T PRK09509 121 TLVALICTLILVTFQRWVVRKTQSQAVRADMLHYQSDVMMNGAILLALGLSW--------YGWHRADALFALGIGIYILY 192 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hChHHHHHHHHHHHHHHHHH
Confidence 3455677877777777777789999999999999999999999888888763 58889999999999999999
Q ss_pred HHHHHHHHHHHHhhcCC
Q 016028 157 ISGILVYEAVDRIVHKS 173 (396)
Q Consensus 157 ~~~~l~~esi~~li~~~ 173 (396)
.++.++++++..+++..
T Consensus 193 ~~~~i~~~~~~~Ll~~~ 209 (299)
T PRK09509 193 SALRMGYEAVQSLLDRA 209 (299)
T ss_pred HHHHHHHHHHHHHhccC
Confidence 99999999999999864
No 16
>PRK03557 zinc transporter ZitB; Provisional
Probab=97.05 E-value=0.0072 Score=58.75 Aligned_cols=88 Identities=18% Similarity=0.283 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHHHhheecChHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcCcchHHHHHHHHHHHHHHHHH
Q 016028 79 CLIIFSLIAMVVEVVGGFKANSLAVMTDAAHLLTDIAGFSISLFAVWASGWNATSQYSFGFNRFEILGALVSVQLIWLIS 158 (396)
Q Consensus 79 ~~l~~n~~~~v~~l~~g~~s~S~aL~aDa~hsl~D~~s~~i~l~a~~~s~k~~~~~~pfG~~R~E~l~~li~~~~l~~~~ 158 (396)
.++++|++.+... .-+-..+|.++.||+.|...|+++++.++++...... +|+.-++++++++.+++++..+
T Consensus 130 ~~~~~~~~~~~~~-~~~~~~~s~~l~a~~~h~~~D~l~s~~vlv~~~~~~~-------~g~~~~Dpi~~ilis~~i~~~~ 201 (312)
T PRK03557 130 AGLLANILSFWLL-HHGSEEKNLNVRAAALHVLGDLLGSVGAIIAALIIIW-------TGWTPADPILSILVSVLVLRSA 201 (312)
T ss_pred HHHHHHHHHHHHH-hcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------cCCcchhHHHHHHHHHHHHHHH
Confidence 3345554433322 2244467899999999999999999998888766542 3555699999999999999999
Q ss_pred HHHHHHHHHHhhcCCC
Q 016028 159 GILVYEAVDRIVHKSP 174 (396)
Q Consensus 159 ~~l~~esi~~li~~~~ 174 (396)
+.++++++..+++..+
T Consensus 202 ~~l~~~~~~~Lld~~p 217 (312)
T PRK03557 202 WRLLKESVNELLEGAP 217 (312)
T ss_pred HHHHHHHHHHHHccCC
Confidence 9999999999997643
No 17
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=95.36 E-value=0.086 Score=50.48 Aligned_cols=77 Identities=14% Similarity=0.164 Sum_probs=65.6
Q ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh------ccCCchhhhHHHHHHHHHHHHhhHHHHHHHHHHHhcCCC
Q 016028 250 ETKMLNINLQGAYLHVMADLIQSAGVMIAGLILWV------KPGWSIVDLSCTLIFAAFALSTTVPMLKTIFVILMERTP 323 (396)
Q Consensus 250 ~~~~~s~~l~a~~~~~~~D~l~s~~vlva~~l~~~------~~~~~~~D~i~siii~~~i~~~~~~~~~~~~~~Ll~~sp 323 (396)
+-..+|..+.+++.|.++|+++-+.+++|..+..- +.||+.+..+++++-+++++..+.-+++|++.-+....|
T Consensus 42 g~~s~SlaLLADa~Hml~D~~al~lal~A~~~a~r~~~~~~TfGy~R~eiLaa~~nav~Li~~s~~I~~EAi~R~~~P~~ 121 (296)
T COG1230 42 GLLTGSLALLADALHMLSDALALLLALIAIKLARRPATKRFTFGYKRLEILAAFLNALLLIVVSLLILWEAIQRLLAPPP 121 (296)
T ss_pred HHHhccHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34578999999999999999999988888777533 227888999999999999999999999999999997665
Q ss_pred Ccc
Q 016028 324 SEI 326 (396)
Q Consensus 324 ~~~ 326 (396)
.+.
T Consensus 122 i~~ 124 (296)
T COG1230 122 IHY 124 (296)
T ss_pred CCc
Confidence 433
No 18
>KOG1485 consensus Mitochondrial Fe2+ transporter MMT1 and related transporters (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=95.29 E-value=0.051 Score=53.77 Aligned_cols=87 Identities=20% Similarity=0.188 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHHHhheecChHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcCcchHHHHHHHHHHHHHHHHH
Q 016028 79 CLIIFSLIAMVVEVVGGFKANSLAVMTDAAHLLTDIAGFSISLFAVWASGWNATSQYSFGFNRFEILGALVSVQLIWLIS 158 (396)
Q Consensus 79 ~~l~~n~~~~v~~l~~g~~s~S~aL~aDa~hsl~D~~s~~i~l~a~~~s~k~~~~~~pfG~~R~E~l~~li~~~~l~~~~ 158 (396)
+++......+.+-...+..++|..+.|-|.|-.+|+++..++|.+.+.+. |++.-++|+|+++.+.+++..+
T Consensus 235 i~is~~~vk~~l~~~c~~~~ns~iv~a~A~dHr~D~lTn~vaLva~~la~--------~~~~~lDP~gailVS~~ii~t~ 306 (412)
T KOG1485|consen 235 IMISAKEVKLRLTLYCAIKTNSNIVRANAWDHRNDVLTNSVALVAASLAY--------YYNYWLDPIGAILVSTYIIYTG 306 (412)
T ss_pred ehhhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhHHHHHHHHHHHHHHHH--------hhhhcccchhhhhhheehhhhh
Confidence 33445555666667778889999999999999999999999999999987 4457889999999999999999
Q ss_pred HHHHHHHHHHhhcCC
Q 016028 159 GILVYEAVDRIVHKS 173 (396)
Q Consensus 159 ~~l~~esi~~li~~~ 173 (396)
+.-..+++..|++..
T Consensus 307 ~~t~~~~i~~Lvg~~ 321 (412)
T KOG1485|consen 307 GRTGLENIKELVGRS 321 (412)
T ss_pred hHHHHHHHHHHhCCC
Confidence 999999999999764
No 19
>PF01545 Cation_efflux: Cation efflux family; InterPro: IPR002524 Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt. These proteins are considered to be efflux pumps that remove these ions from cells [, ], however others are implicated in ion uptake []. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3BYP_B 3BYR_A 3H90_B 2QFI_B 2ZZT_A.
Probab=89.29 E-value=0.34 Score=46.06 Aligned_cols=90 Identities=19% Similarity=0.146 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHHHHHhheecC--hHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcCcch-HHHHHHHHHHHH
Q 016028 77 LFCLIIFSLIAMVVEVVGGFKAN--SLAVMTDAAHLLTDIAGFSISLFAVWASGWNATSQYSFGFNR-FEILGALVSVQL 153 (396)
Q Consensus 77 l~~~l~~n~~~~v~~l~~g~~s~--S~aL~aDa~hsl~D~~s~~i~l~a~~~s~k~~~~~~pfG~~R-~E~l~~li~~~~ 153 (396)
..+++++|+++.....-.|--.+ |..+.+++.|.+.|.+..+..+.+.....-. ++.. ++++++++.+++
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~~~~~~~~~d~~~s~~v~i~~~~~~~~-------~~~~~~D~v~~l~i~~~ 181 (284)
T PF01545_consen 109 ALVSIIVNLLLAWYLRRVGKRLQRRSPALRADALHSLIDVLSSLAVLISLLLAYLG-------PWFWYADPVASLLIALF 181 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS---SHHHHHHHHHHHHHTS-SSTS-SSSTSSSTT--------STS-SSHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHhhcccccccccccchhhhhhcccchhHHHHHHHHHHHHHHH-------hcccccchhhhhHHHHH
Confidence 34555666666655555444455 9999999999999999998888776655432 2333 899999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCC
Q 016028 154 IWLISGILVYEAVDRIVHKS 173 (396)
Q Consensus 154 l~~~~~~l~~esi~~li~~~ 173 (396)
++..+..++.+++..+++..
T Consensus 182 i~~~~~~~~~~~~~~Ll~~~ 201 (284)
T PF01545_consen 182 ILYSGYPLIKESIRILLDAS 201 (284)
T ss_dssp HHHHHHHHHHHHHHHHTT-S
T ss_pred Hhhhhhhchhhhhccccccc
Confidence 99999999999999999774
No 20
>PLN02601 beta-carotene hydroxylase
Probab=87.54 E-value=7.3 Score=36.59 Aligned_cols=75 Identities=12% Similarity=0.027 Sum_probs=38.9
Q ss_pred HHHHhcCCCCCCCCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHH---HHHHHHHHHHHHHHHHH
Q 016028 123 AVWASGWNATSQYSFGFNRFEILGALVSVQLIWLISGILVYEAVDRIVHKSPTVNGQLMF---GVAAFGFLINIIMVTCI 199 (396)
Q Consensus 123 a~~~s~k~~~~~~pfG~~R~E~l~~li~~~~l~~~~~~l~~esi~~li~~~~~~~~~~~~---~i~~~~lv~n~~~~~~~ 199 (396)
+.+.++|+ +++++| .+++..+++.+..+++..+|--+..-+++...+.. .|+ .+.+.+++.....+++.
T Consensus 83 ~~~~~~k~-~er~ty------~~aa~~ss~gi~s~a~~a~y~rf~~~~~~g~~p~~-em~~~~al~lgtfvgMEf~Aw~a 154 (303)
T PLN02601 83 LKKAEKKK-SERFTY------LIAAVMSSFGITSMAIMAVYYRFSWQMKGGEVSML-EMFGTFALSVGAAVGMEFWARWA 154 (303)
T ss_pred HHHHHHhh-hhhhHH------HHHHHHHhhcHHHHHHHHHHHHHhhccCCCCcCHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555553 333333 22555566667777766665544444444322222 222 23455566666666776
Q ss_pred hccCCC
Q 016028 200 GHDHAH 205 (396)
Q Consensus 200 ~~~~~~ 205 (396)
.++-.|
T Consensus 155 HKYvMH 160 (303)
T PLN02601 155 HRALWH 160 (303)
T ss_pred HHHHHH
Confidence 666555
No 21
>PF02535 Zip: ZIP Zinc transporter; InterPro: IPR003689 These ZIP zinc transporter proteins define a family of metal ion transporters that are found in plants, protozoa, fungi, invertebrates, and vertebrates, making it now possible to address questions of metal ion accumulation and homeostasis in diverse organisms [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane
Probab=85.21 E-value=36 Score=32.54 Aligned_cols=32 Identities=19% Similarity=0.148 Sum_probs=23.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 016028 140 NRFEILGALVSVQLIWLISGILVYEAVDRIVH 171 (396)
Q Consensus 140 ~R~E~l~~li~~~~l~~~~~~l~~esi~~li~ 171 (396)
..+..+-++..|+++...-+-++-|++..+-+
T Consensus 36 ~~l~~~~~fa~GvlL~~a~~hLLPea~~~~~~ 67 (317)
T PF02535_consen 36 RILSLLNAFAAGVLLGTAFLHLLPEAIEALES 67 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCchhhccccc
Confidence 35666777777887777777788888887743
No 22
>PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B.
Probab=84.62 E-value=8.9 Score=30.12 Aligned_cols=66 Identities=15% Similarity=0.111 Sum_probs=49.9
Q ss_pred cHHHHHHHHHcccCccceeeeEEEEeeCCeEEEEEEEEeCCCCC-----HHHHHHHHHHHHHhhCCCceeEEe
Q 016028 327 NVARLQRDLECIKGVQTIHDLHVWAITVGKLVLSCHVIAEPAVS-----SSEILDKIRDYCQKTHRIYHVTVQ 394 (396)
Q Consensus 327 ~~~~i~~~l~~~~~V~~v~~l~~~~~~~~~~~v~v~I~v~~~~~-----~~~i~~~i~~~l~~~~~v~~vtV~ 394 (396)
...+|++.+.++|++..-..+.+..- ++.=.+.+.|++.++.+ .+++.+++++.|+...++. +.|+
T Consensus 5 fP~~Ie~vl~~~~~~~~~y~i~v~~~-~~~D~l~v~vE~~~~~~~~~~~~~~l~~~i~~~lk~~lgv~-~~V~ 75 (96)
T PF14535_consen 5 FPSQIEEVLREFPEVSPEYQIVVTRE-GGLDELTVRVELRPGFSDDAEDLEALAERIAERLKERLGVR-PEVE 75 (96)
T ss_dssp -HHHHHHHHCTSTTEEEEEEEEEEEE-TTEEEEEEEEEESTTCCTTHHHHHHHHHHHHHHHHHHHSS--EEEE
T ss_pred CHHHHHHHHHhCcCCCCcEEEEEEcC-CCCcEEEEEEEECCccCcchHHHHHHHHHHHHHHHhhcCce-EEEE
Confidence 45789999999999987788888763 56667899999999763 3578888888888877763 4443
No 23
>PF03780 Asp23: Asp23 family; InterPro: IPR005531 This entry represents the alkaline shock protein 23 family. These small proteins are involved in alkaline pH tolerance of Staphylococcus aureus [,].
Probab=80.97 E-value=11 Score=30.15 Aligned_cols=48 Identities=23% Similarity=0.395 Sum_probs=32.8
Q ss_pred eEEEEee-CCeEEEEEEEEeCCCCCHH----HHHHHHHHHHHhhCC--CceeEEee
Q 016028 347 LHVWAIT-VGKLVLSCHVIAEPAVSSS----EILDKIRDYCQKTHR--IYHVTVQI 395 (396)
Q Consensus 347 l~~~~~~-~~~~~v~v~I~v~~~~~~~----~i~~~i~~~l~~~~~--v~~vtV~v 395 (396)
+++.. . ++.+.+++++.+..+.+.. ++.+++++.+++.-+ +.++.|++
T Consensus 50 v~v~~-~~~~~i~v~l~v~v~~g~~i~~v~~~iq~~V~~~v~~~tg~~v~~V~V~V 104 (108)
T PF03780_consen 50 VKVEV-DEDGGITVDLHVVVEYGVNIPEVAEEIQEKVKEAVEEMTGIEVSEVNVHV 104 (108)
T ss_pred eEEEE-ccCcceEEEEEEEEECCccHHHHHHHHHHHHHHHHHHHHCCeeEEEEEEE
Confidence 45543 3 6678899999999998854 555666666655444 66676665
No 24
>PF01883 DUF59: Domain of unknown function DUF59; InterPro: IPR002744 This family includes prokaryotic proteins of unknown function. The family also includes PhaH (O84984 from SWISSPROT) from Pseudomonas putida. PhaH forms a complex with PhaF (O84982 from SWISSPROT), PhaG (O84983 from SWISSPROT) and PhaI (O84985 from SWISSPROT), which hydroxylates phenylacetic acid to 2-hydroxyphenylacetic acid []. So members of this family may all be components of ring hydroxylating complexes.; PDB: 3LNO_C 3CQ3_A 3CQ2_D 2CU6_B 3CQ1_A 3UX3_B 3UX2_A 1WCJ_A 1UWD_A.
Probab=78.61 E-value=10 Score=27.84 Aligned_cols=47 Identities=19% Similarity=0.306 Sum_probs=29.8
Q ss_pred eeeeEEEEeeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHhhCCCceeEE
Q 016028 344 IHDLHVWAITVGKLVLSCHVIAEPAVSSSEILDKIRDYCQKTHRIYHVTV 393 (396)
Q Consensus 344 v~~l~~~~~~~~~~~v~v~I~v~~~~~~~~i~~~i~~~l~~~~~v~~vtV 393 (396)
|.++. +.+|++.+++.+..+.......+.+++++.++...++..|.|
T Consensus 26 V~~i~---i~~~~V~v~l~l~~~~~~~~~~l~~~i~~~l~~l~gv~~V~V 72 (72)
T PF01883_consen 26 VRDIS---IEGGKVSVSLELPTPACPAAEPLREEIREALKALPGVKSVKV 72 (72)
T ss_dssp EEEEE---ECTCEEEEEE--SSTTHTTHHHHHHHHHHHHHTSTT-SEEEE
T ss_pred eeEEE---EECCEEEEEEEECCCCchHHHHHHHHHHHHHHhCCCCceEeC
Confidence 45554 456777666544433333357899999999987778888875
No 25
>PRK10019 nickel/cobalt efflux protein RcnA; Provisional
Probab=76.93 E-value=71 Score=30.53 Aligned_cols=29 Identities=14% Similarity=-0.010 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016028 141 RFEILGALVSVQLIWLISGILVYEAVDRI 169 (396)
Q Consensus 141 R~E~l~~li~~~~l~~~~~~l~~esi~~l 169 (396)
+.++..-.+++++++.+++++++...++.
T Consensus 85 ~~~~~le~~S~~lii~lGl~ll~r~~r~~ 113 (279)
T PRK10019 85 SAEPWLQLISAVIIISTAFWMFWRTWRGE 113 (279)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777788888888887777653
No 26
>KOG1484 consensus Putative Zn2+ transporter MSC2 (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=76.00 E-value=34 Score=33.33 Aligned_cols=71 Identities=11% Similarity=0.138 Sum_probs=60.1
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc------CCchhhhHHHHHHHHHHHHhhHHHHHHHHHHHhcC
Q 016028 251 TKMLNINLQGAYLHVMADLIQSAGVMIAGLILWVKP------GWSIVDLSCTLIFAAFALSTTVPMLKTIFVILMER 321 (396)
Q Consensus 251 ~~~~s~~l~a~~~~~~~D~l~s~~vlva~~l~~~~~------~~~~~D~i~siii~~~i~~~~~~~~~~~~~~Ll~~ 321 (396)
...++..+-+++.|...|+.+.+.-+.+..+..+.+ |+..+..+.+..=+++....++.+++|++.-|++-
T Consensus 56 ~~snSlgLiSda~hm~FDctal~~gL~a~~is~~~~~~~fsyG~~r~evLagF~n~vflvl~a~fi~~Es~eRl~~p 132 (354)
T KOG1484|consen 56 SWSNSLGLISDAFHMFFDCTALLAGLYASVISKWPANDKFSYGYGRIEVLAGFVNGVFLVLIAFFIFSESVERLFDP 132 (354)
T ss_pred hccCcHHHHHHHHHHHHHHHHHHhhhhHHHHhcCCCccccCcchhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCc
Confidence 345778889999999999999998888888865532 45578888999999999999999999999999974
No 27
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=73.59 E-value=67 Score=28.68 Aligned_cols=49 Identities=14% Similarity=0.189 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchhHH-HHHHHHHHHHHHHHHHHhcc
Q 016028 154 IWLISGILVYEAVDRIVHKSPTVNGQLMF-GVAAFGFLINIIMVTCIGHD 202 (396)
Q Consensus 154 l~~~~~~l~~esi~~li~~~~~~~~~~~~-~i~~~~lv~n~~~~~~~~~~ 202 (396)
++++++..+..++..++.......+...+ ..+++|-....++++|.+|.
T Consensus 102 Ll~lg~~aLlsgitaff~~nA~~~GlItlll~a~vgGfamy~my~y~yr~ 151 (226)
T COG4858 102 LLFLGAMALLSGITAFFQKNAQVYGLITLLLTAVVGGFAMYIMYYYAYRM 151 (226)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 55666677788888888776544443333 34555555566666666653
No 28
>PF07444 Ycf66_N: Ycf66 protein N-terminus; InterPro: IPR010004 This entry represents Ycf66, a protein that is restricted to the chloroplasts of simple plants and algae. It is also found in the cyanobacteria. The function is unknown. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=72.45 E-value=42 Score=25.89 Aligned_cols=47 Identities=21% Similarity=0.422 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCchhhhH---HHHHHHHHHHHhhHHHHH
Q 016028 264 HVMADLIQSAGVMIAGLILWVKPGWSIVDLS---CTLIFAAFALSTTVPMLK 312 (396)
Q Consensus 264 ~~~~D~l~s~~vlva~~l~~~~~~~~~~D~i---~siii~~~i~~~~~~~~~ 312 (396)
+-..|.+-+...++++++-++. +| .+||+ +-++.+..+++.+++.+|
T Consensus 33 ~Rd~D~~fs~vgLl~g~IL~~~-gw-Rldp~ll~~Q~l~~~~~i~f~~e~ir 82 (84)
T PF07444_consen 33 SRDYDIFFSSVGLLYGLILWFQ-GW-RLDPILLFGQMLLVGLLIFFGWETIR 82 (84)
T ss_pred hhhhhHHHHHHHHHHHHHHHHH-hh-cccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445777777777776666664 67 58999 566666777777766554
No 29
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=72.31 E-value=92 Score=30.14 Aligned_cols=38 Identities=3% Similarity=-0.077 Sum_probs=33.3
Q ss_pred CCchhhhHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCC
Q 016028 287 GWSIVDLSCTLIFAAFALSTTVPMLKTIFVILMERTPS 324 (396)
Q Consensus 287 ~~~~~D~i~siii~~~i~~~~~~~~~~~~~~Ll~~sp~ 324 (396)
+.|++-++.++++++++.|.++.+.-....+++--.++
T Consensus 106 ~ip~~~~ii~vi~t~il~y~G~~~~~k~~de~~~l~~~ 143 (356)
T COG4956 106 PIPFISTIIPVILTIILAYFGFQLADKKRDEFLRLLNP 143 (356)
T ss_pred CccHHHhHHHHHHHHHHHHHhhHHhhhhhHHHHHhcch
Confidence 67899999999999999999999998888888765544
No 30
>PF09580 Spore_YhcN_YlaJ: Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ); InterPro: IPR019076 This entry contains YhcN and YlaJ, which are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic, 40-residue C-terminal domain.
Probab=71.80 E-value=23 Score=31.08 Aligned_cols=65 Identities=17% Similarity=0.221 Sum_probs=45.6
Q ss_pred cccHHHHHHHHHcccCccceeeeEEEEeeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHhhCC-CceeEEe
Q 016028 325 EINVARLQRDLECIKGVQTIHDLHVWAITVGKLVLSCHVIAEPAVSSSEILDKIRDYCQKTHR-IYHVTVQ 394 (396)
Q Consensus 325 ~~~~~~i~~~l~~~~~V~~v~~l~~~~~~~~~~~v~v~I~v~~~~~~~~i~~~i~~~l~~~~~-v~~vtV~ 394 (396)
....+++.+.+.+++||.+ ..+-. .+...+|-+.+. .......++.+++++++++.++ +.+|+|-
T Consensus 74 ~~~a~~i~~~v~~~~~V~~---A~vvv-~~~~a~Vav~~~-~~~~~~~~i~~~V~~~v~~~~p~~~~V~Vs 139 (177)
T PF09580_consen 74 QQLADRIANRVKKVPGVED---ATVVV-TDDNAYVAVDLD-FNRFNTKKIKKKVEKAVKSADPRIYNVYVS 139 (177)
T ss_pred HHHHHHHHHHHhcCCCceE---EEEEE-ECCEEEEEEEec-ccccchhHHHHHHHHHHHHhCCCccEEEEE
Confidence 3445778888888888754 44442 466777777666 3355678999999999988664 6888774
No 31
>COG3696 Putative silver efflux pump [Inorganic ion transport and metabolism]
Probab=65.74 E-value=22 Score=39.24 Aligned_cols=68 Identities=12% Similarity=0.170 Sum_probs=44.0
Q ss_pred HHHHHHHHHcccCccceeeeEEEEee----CCeEEEEEEEEeCCC--C----CHHHHHHHHHHHHHhhCCCceeEEee
Q 016028 328 VARLQRDLECIKGVQTIHDLHVWAIT----VGKLVLSCHVIAEPA--V----SSSEILDKIRDYCQKTHRIYHVTVQI 395 (396)
Q Consensus 328 ~~~i~~~l~~~~~V~~v~~l~~~~~~----~~~~~v~v~I~v~~~--~----~~~~i~~~i~~~l~~~~~v~~vtV~v 395 (396)
.+++++.++++|+|..+-.=--+.=+ .+--..+-.|.+.|. + +-+++.+++++.+++.+|+...+.|+
T Consensus 579 ~~~~e~~ik~~PeV~~V~~k~GrAe~~tD~~~~n~~et~I~Lkp~~eW~~~~t~~~lie~l~~~~~~lpG~~~~~tqP 656 (1027)
T COG3696 579 LQAIERAIKKFPEVERVFGKTGRAETATDPAPLNMIETFIELKPQEEWKDKKTRDELIEELRKTLEQLPGLANSFTQP 656 (1027)
T ss_pred HHHHHHHHhcCcchheeeeccccCCCCCCCCCcccceeeEEecchhhCCCcccHHHHHHHHHHHHHhCCCcccccccc
Confidence 35688888888988766421111100 112457888888553 2 35789999999998888876665553
No 32
>KOG1483 consensus Zn2+ transporter ZNT1 and related Cd2+/Zn2+ transporters (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=65.43 E-value=39 Score=33.64 Aligned_cols=71 Identities=18% Similarity=0.198 Sum_probs=59.0
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh------ccCCchhhhHHHHHHHHHHHHhhHHHHHHHHHHHhcCC
Q 016028 252 KMLNINLQGAYLHVMADLIQSAGVMIAGLILWV------KPGWSIVDLSCTLIFAAFALSTTVPMLKTIFVILMERT 322 (396)
Q Consensus 252 ~~~s~~l~a~~~~~~~D~l~s~~vlva~~l~~~------~~~~~~~D~i~siii~~~i~~~~~~~~~~~~~~Ll~~s 322 (396)
-.++..+-++..|.++|+++=++++.+.=.... ++||...+.+++++-+++....-..++.|++...+...
T Consensus 31 v~~sLaLiadSfHML~dIiaLivaf~~ik~a~~~~~~k~tyGw~rAEilGalvN~ifl~alc~~I~~EA~~R~I~p~ 107 (404)
T KOG1483|consen 31 VTNSLALIADSFHMLNDIIALIVAFWAIKEAKRIPLQKYTYGWARAEILGALVNAIFLTALCVSILIEAIERIIEPH 107 (404)
T ss_pred ccchHHHHhhHHHHHHHHHHHHHHHHHHHhhhcCcccccCcchhHHHHHhhhhHHHHHHHHHHHHHHHHHHhhcCCc
Confidence 457788999999999999988777776544332 34899999999999999999999999999999888644
No 33
>PF01037 AsnC_trans_reg: AsnC family; InterPro: IPR019887 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One such family is the AsnC/Lrp subfamily []. The Lrp family of transcriptional regulators appears to be widely distributed among bacteria and archaea, as an important regulatory system of the amino acid metabolism and related processes []. Members of the Lrp family are small DNA-binding proteins with molecular masses of around 15 kDa. Target promoters often contain a number of binding sites that typically lack obvious inverted repeat elements, and to which binding is usually co-operative. LrpA from Pyrococcus furiosus is the first Lrp-like protein to date of which a three-dimensional structure has been solved. In the crystal structure LrpA forms an octamer consisting of four dimers. The structure revealed that the N-terminal part of the protein consists of a helix-turn-helix (HTH) domain, a fold generally involved in DNA binding. The C terminus of Lrp-like proteins has a beta-fold, where the two alpha-helices are located at one side of the four-stranded antiparallel beta-sheet. LrpA forms a homodimer mainly through interactions between the beta-strands of this C-terminal domain, and an octamer through further interactions between the second alpha-helix and fourth beta-strand of the motif. Hence, the C-terminal domain of Lrp-like proteins appears to be involved in ligand-response and activation [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2DJW_F 2GQQ_A 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2CG4_B 2DBB_B 1I1G_A ....
Probab=64.19 E-value=25 Score=25.41 Aligned_cols=61 Identities=18% Similarity=0.115 Sum_probs=40.2
Q ss_pred ccHHHHHHHHHcccCccceeeeEEEEeeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHhhCCCceeEEee
Q 016028 326 INVARLQRDLECIKGVQTIHDLHVWAITVGKLVLSCHVIAEPAVSSSEILDKIRDYCQKTHRIYHVTVQI 395 (396)
Q Consensus 326 ~~~~~i~~~l~~~~~V~~v~~l~~~~~~~~~~~v~v~I~v~~~~~~~~i~~~i~~~l~~~~~v~~vtV~v 395 (396)
+..+++.+.+.+.|+|..++ .++| .+-+-+++.++ +..++.+-+.+.|.+..+|.++...+
T Consensus 10 ~~~~~~~~~l~~~p~V~~~~-----~vtG-~~d~~~~v~~~---d~~~l~~~i~~~l~~~~gV~~~~t~i 70 (74)
T PF01037_consen 10 DAYDEFAEALAEIPEVVECY-----SVTG-EYDLILKVRAR---DMEELEEFIREKLRSIPGVRRTETSI 70 (74)
T ss_dssp THHHHHHHHHHTSTTEEEEE-----EESS-SSSEEEEEEES---SHHHHHHHHHHTHHTSTTEEEEEEEE
T ss_pred chHHHHHHHHHcCCCEEEEE-----EEeC-CCCEEEEEEEC---CHHHHHHHHHHHhhcCCCEEEEEEEE
Confidence 34788999999999887665 3333 33333444554 55666566666688888888877653
No 34
>TIGR02945 SUF_assoc FeS assembly SUF system protein. Members of this family belong to the broader Pfam family pfam01883, or Domain of Unknown Function DUF59. Many members of DUF59 are candidate ring hydroxylating complex subunits. However, members of the narrower family defined here all are found in genomes that carry the FeS assembly SUF system. For 70 % of these species, the member of this protein family is found as part of the SUF locus, usually immediately downstream of the sufS gene.
Probab=62.05 E-value=62 Score=25.30 Aligned_cols=41 Identities=12% Similarity=0.215 Sum_probs=28.8
Q ss_pred CeEEEEEEEEeCCCCCHHHHHHHHHHHHHhhCCCceeEEee
Q 016028 355 GKLVLSCHVIAEPAVSSSEILDKIRDYCQKTHRIYHVTVQI 395 (396)
Q Consensus 355 ~~~~v~v~I~v~~~~~~~~i~~~i~~~l~~~~~v~~vtV~v 395 (396)
+.+.+.+.+..+...-...+.+.+++.+.+..++..+.|.+
T Consensus 37 ~~v~i~l~l~~p~~~~~~~l~~~i~~al~~l~gv~~v~v~i 77 (99)
T TIGR02945 37 GHVDIQMTLTAPNCPVAGSMPGEVENAVRAVPGVGSVTVEL 77 (99)
T ss_pred CeEEEEEEECCCCCChHHHHHHHHHHHHHhCCCCceEEEEE
Confidence 56555555544544445678899999998777888888765
No 35
>TIGR00489 aEF-1_beta translation elongation factor aEF-1 beta. This model describes the archaeal translation elongation factor aEF-1 beta. The member from Sulfolobus solfataricus was demonstrated experimentally. It is a dimer that catalyzes the exchange of GDP for GTP on aEF-1 alpha.
Probab=53.28 E-value=98 Score=24.08 Aligned_cols=66 Identities=14% Similarity=0.221 Sum_probs=46.5
Q ss_pred CcccHHHHHHHHHc-ccCccceeeeEEEEeeCCeEEEEEEEEeCCCC-CHHHHHHHHHHHHHhhCCCceeEE
Q 016028 324 SEINVARLQRDLEC-IKGVQTIHDLHVWAITVGKLVLSCHVIAEPAV-SSSEILDKIRDYCQKTHRIYHVTV 393 (396)
Q Consensus 324 ~~~~~~~i~~~l~~-~~~V~~v~~l~~~~~~~~~~~v~v~I~v~~~~-~~~~i~~~i~~~l~~~~~v~~vtV 393 (396)
++.+.+++.+.+++ .++-..+.....--++.|-..+.+.+.++.+. .. +.+++.+.+--+|.++.|
T Consensus 15 ~evDle~L~~~ik~~~~~g~~~~~~~~ePiaFGLkaL~~~~vv~D~~g~t----d~lee~i~~ve~V~svev 82 (88)
T TIGR00489 15 PDVDLEALKEKIKERIPEGVEIRKIDEEPIAFGLVAINVMVVMGDAEGGT----EAAEESLSGIEGVESVEV 82 (88)
T ss_pred CccCHHHHHHHHHHhCcCCcEEeeeEEEeeeccceeeEEEEEEecCCcCh----HHHHHHHhcCCCccEEEE
Confidence 45678889888866 46556677777777778888888888887663 23 444555655557888766
No 36
>PLN02159 Fe(2+) transport protein
Probab=52.79 E-value=2.4e+02 Score=27.77 Aligned_cols=31 Identities=10% Similarity=0.036 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 016028 141 RFEILGALVSVQLIWLISGILVYEAVDRIVH 171 (396)
Q Consensus 141 R~E~l~~li~~~~l~~~~~~l~~esi~~li~ 171 (396)
.+..+-+|..|+++...-+-++-++.+.+-+
T Consensus 80 ~~~~~~~FagGV~Lat~flHLLp~a~e~l~~ 110 (337)
T PLN02159 80 IFTIVKCFASGIILGTGFMHVLPDSFEMLSS 110 (337)
T ss_pred HHHHHHHHhhhHhHHHHHHHhhhHHHHhhhc
Confidence 4566667777888877777788898887764
No 37
>TIGR03406 FeS_long_SufT probable FeS assembly SUF system protein SufT. The function is unknown for this protein family, but members are found almost always in operons for the the SUF system of iron-sulfur cluster biosynthesis. The SUF system is present elsewhere on the chromosome for those few species where SUF genes are not adjacent. This family shares this property of association with the SUF system with a related family, TIGR02945. TIGR02945 consists largely of a DUF59 domain (see Pfam family pfam01883), while this protein is about double the length, with a unique N-terminal domain and DUF59 C-terminal domain. A location immediately downstream of the cysteine desulfurase gene sufS in many contexts suggests the gene symbol sufT. Note that some other homologs of this family and of TIGR02945, but no actual members of this family, are found in operons associated with phenylacetic acid (or other ring-hydroxylating) degradation pathways.
Probab=52.78 E-value=99 Score=27.31 Aligned_cols=70 Identities=11% Similarity=0.163 Sum_probs=43.5
Q ss_pred ccHHHHHHHHHcc--cC----c---cceeeeEEEEeeCC--eEEEEEEEEeCCCCCHHHHHHHHHHHHHhhCCCceeEEe
Q 016028 326 INVARLQRDLECI--KG----V---QTIHDLHVWAITVG--KLVLSCHVIAEPAVSSSEILDKIRDYCQKTHRIYHVTVQ 394 (396)
Q Consensus 326 ~~~~~i~~~l~~~--~~----V---~~v~~l~~~~~~~~--~~~v~v~I~v~~~~~~~~i~~~i~~~l~~~~~v~~vtV~ 394 (396)
...++|.+.|+++ |+ + --|+++.+-....+ ++.+.+.+..+.---...+.+.+++++.+..++.++.|.
T Consensus 73 ~~ee~V~eaL~tV~DPei~~nIVeLGlV~~I~Id~~~~~~~~V~I~mtLt~p~c~~~~~L~~dV~~aL~~l~gV~~V~V~ 152 (174)
T TIGR03406 73 DNEDQVWEQLRTVYDPEIPVNIVDLGLVYGCRVEKLGEGQFRVDIEMTLTAPGCGMGPVLVEDVEDKVLAVPNVDEVEVE 152 (174)
T ss_pred ccHHHHHHHHcCCCCCCCCCChHHcCCeEEEEEecccCCCCEEEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCceeEEEE
Confidence 3446777777774 32 1 22555655421113 555665554444333567889999999877889988887
Q ss_pred e
Q 016028 395 I 395 (396)
Q Consensus 395 v 395 (396)
+
T Consensus 153 l 153 (174)
T TIGR03406 153 L 153 (174)
T ss_pred E
Confidence 5
No 38
>PF02535 Zip: ZIP Zinc transporter; InterPro: IPR003689 These ZIP zinc transporter proteins define a family of metal ion transporters that are found in plants, protozoa, fungi, invertebrates, and vertebrates, making it now possible to address questions of metal ion accumulation and homeostasis in diverse organisms [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane
Probab=50.43 E-value=1.2e+02 Score=28.74 Aligned_cols=70 Identities=17% Similarity=0.133 Sum_probs=44.5
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcCcchHHHHHHHHH----------------HHHHHHHHHHHHHH
Q 016028 101 LAVMTDAAHLLTDIAGFSISLFAVWASGWNATSQYSFGFNRFEILGALVS----------------VQLIWLISGILVYE 164 (396)
Q Consensus 101 ~aL~aDa~hsl~D~~s~~i~l~a~~~s~k~~~~~~pfG~~R~E~l~~li~----------------~~~l~~~~~~l~~e 164 (396)
.-.+|=.+|-+.+.++.+..+.....+++.... +-+-+.-..|+++++. ++++.+.+..++|-
T Consensus 202 ~~~~ai~~Hk~~e~~~~~~~l~~~~~~~~~~~~-~~~~~sl~~piG~~ig~~~~~~~~~~~~~~~~~~~~a~aaG~~lyv 280 (317)
T PF02535_consen 202 SLFIAIILHKIPEGFALGSILVKAGFSKRKALL-LLLLFSLSTPIGALIGIAISNSGSSSSSDIVSGILLAFAAGTFLYV 280 (317)
T ss_pred HHHHHHHHhHhHHHhhhhhhhhhhccccchhhH-HHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHH
Confidence 456778888888888888888776665554332 4455555566555443 33455666666677
Q ss_pred HHHHhhc
Q 016028 165 AVDRIVH 171 (396)
Q Consensus 165 si~~li~ 171 (396)
++..++.
T Consensus 281 ~~~ell~ 287 (317)
T PF02535_consen 281 AFVELLP 287 (317)
T ss_pred HHHHHHH
Confidence 7776653
No 39
>PF11381 DUF3185: Protein of unknown function (DUF3185); InterPro: IPR021521 Some members in this bacterial family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=50.05 E-value=58 Score=23.35 Aligned_cols=47 Identities=17% Similarity=0.139 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHH---HHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHH
Q 016028 148 LVSVQLIWLISGIL---VYEAVDRIVHKSPTVNGQLMFGVAAFGFLINII 194 (396)
Q Consensus 148 li~~~~l~~~~~~l---~~esi~~li~~~~~~~~~~~~~i~~~~lv~n~~ 194 (396)
++.++.++..+... +.+.+.|++.++++....+.++-++++.++-+.
T Consensus 8 lv~GivLl~~G~~~~~S~~s~~s~~~TG~~t~~t~~~ligG~va~ivGl~ 57 (59)
T PF11381_consen 8 LVGGIVLLYFGYQASDSLGSQVSRAFTGSPTDKTIWYLIGGAVAVIVGLF 57 (59)
T ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHhcCCCCchhHHHHHhHHHHHHHHHh
Confidence 34455555555543 455677888887777777777777777766543
No 40
>PRK11023 outer membrane lipoprotein; Provisional
Probab=46.18 E-value=33 Score=30.71 Aligned_cols=69 Identities=14% Similarity=0.150 Sum_probs=43.2
Q ss_pred HHhcCCCCcccHHHHHHHHHcccCccceee-eEEEEeeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHhhCCCceeEEee
Q 016028 317 ILMERTPSEINVARLQRDLECIKGVQTIHD-LHVWAITVGKLVLSCHVIAEPAVSSSEILDKIRDYCQKTHRIYHVTVQI 395 (396)
Q Consensus 317 ~Ll~~sp~~~~~~~i~~~l~~~~~V~~v~~-l~~~~~~~~~~~v~v~I~v~~~~~~~~i~~~i~~~l~~~~~v~~vtV~v 395 (396)
.|.|..|.+...++..+..++.+||.+|++ +++. +.. .+....+-..|..+++..|.....+...-|++
T Consensus 80 ~L~G~V~~~~~k~~A~~ia~~v~GV~~V~N~l~V~---~~~-------~~~~~~~D~~It~kik~~L~~~~~v~~~~I~V 149 (191)
T PRK11023 80 LLTGQSPNAELSERAKQIAMGVEGVNEVYNEIRQG---QPI-------GLGTASKDTWITTKVRSQLLTSDSVKSSNVKV 149 (191)
T ss_pred EEEEEeCCHHHHHHHHHHHhcCCCceeecceeeec---ccc-------ccccccCcHHHHHHHHHHHhcCCCCCcceEEE
Confidence 356888888888999999999999988774 3331 110 01111112247788888887665555444443
No 41
>PRK00435 ef1B elongation factor 1-beta; Validated
Probab=44.80 E-value=1.3e+02 Score=23.37 Aligned_cols=66 Identities=15% Similarity=0.201 Sum_probs=44.1
Q ss_pred CcccHHHHHHHHHcc-cCccceeeeEEEEeeCCeEEEEEEEEeCCC-CCHHHHHHHHHHHHHhhCCCceeEE
Q 016028 324 SEINVARLQRDLECI-KGVQTIHDLHVWAITVGKLVLSCHVIAEPA-VSSSEILDKIRDYCQKTHRIYHVTV 393 (396)
Q Consensus 324 ~~~~~~~i~~~l~~~-~~V~~v~~l~~~~~~~~~~~v~v~I~v~~~-~~~~~i~~~i~~~l~~~~~v~~vtV 393 (396)
++.+++++++.+++. ++-..+.....--++.|-..+.+.+.++.+ -..+ .+++.+.+--+|.++.|
T Consensus 15 ~e~Dl~~L~~~ik~~~~~g~~~~~~~~ePIaFGLkaL~i~~vv~D~~~~td----~lee~i~~~e~Vqsvei 82 (88)
T PRK00435 15 PEVDLDELKEKIKEVLPEGYKINGIEEEPIAFGLKALKLYVIMPDEEGGTE----PVEEAFANVEGVESVEV 82 (88)
T ss_pred CCcCHHHHHHHHHHhCcCCcEEeEeEEEEeeccceeEEEEEEEEcCCcCcH----HHHHHHhccCCCcEEEE
Confidence 455788888888663 555666777777777787777777787765 2334 44555554446777766
No 42
>TIGR02159 PA_CoA_Oxy4 phenylacetate-CoA oxygenase, PaaJ subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=42.71 E-value=99 Score=26.47 Aligned_cols=42 Identities=19% Similarity=0.130 Sum_probs=27.9
Q ss_pred eCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHhhCCCceeEEee
Q 016028 353 TVGKLVLSCHVIAEPAVSSSEILDKIRDYCQKTHRIYHVTVQI 395 (396)
Q Consensus 353 ~~~~~~v~v~I~v~~~~~~~~i~~~i~~~l~~~~~v~~vtV~v 395 (396)
.++++.+++.+..+..--.+.+.+++++.|++. |+..+.|++
T Consensus 23 ~gd~V~VtIt~Ty~gcpa~e~L~~~I~~aL~~~-Gv~~V~V~i 64 (146)
T TIGR02159 23 DGGGVVVKFTPTYSGCPALEVIRQDIRDAVRAL-GVEVVEVST 64 (146)
T ss_pred ECCEEEEEEEeCCCCCchHHHHHHHHHHHHHhc-CCCeEEEeE
Confidence 456655555444333333567889999999765 888888765
No 43
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=42.05 E-value=2.6e+02 Score=25.14 Aligned_cols=21 Identities=19% Similarity=0.134 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHhheecC
Q 016028 79 CLIIFSLIAMVVEVVGGFKAN 99 (396)
Q Consensus 79 ~~l~~n~~~~v~~l~~g~~s~ 99 (396)
.++.+..+++++..+.++++.
T Consensus 85 ~~L~~~~if~~~~gi~~~f~~ 105 (206)
T PF06570_consen 85 NSLLFFGIFSLLFGIMGFFSP 105 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 444444455555555554444
No 44
>PF09685 Tic20: Tic20-like protein; InterPro: IPR019109 This entry represents a group of uncharacterised conserved proteins including a chloroplast protein import component called Tic20. Chloroplast function requires the import of nuclear encoded proteins from the cytoplasm across the chloroplast double membrane. This is accomplished by two protein complexes, the Toc complex located at the outer membrane and the Tic complex located at the inner membrane. The Toc complex recognises specific proteins by a cleavable N-terminal sequence and is primarily responsible for translocation through the outer membrane, while the Tic complex translocates the protein through the inner membrane. Tic20 is a core member of the Tic complex and is deeply embedded in the inner envelope membrane. It is thought to function as a protein conducting component of the Tic complex [].
Probab=41.21 E-value=1.7e+02 Score=22.86 Aligned_cols=32 Identities=9% Similarity=0.143 Sum_probs=22.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCc
Q 016028 106 DAAHLLTDIAGFSISLFAVWASGWNATSQYSF 137 (396)
Q Consensus 106 Da~hsl~D~~s~~i~l~a~~~s~k~~~~~~pf 137 (396)
..+-.+.-++..+.+.++...+.+..+.+||+
T Consensus 73 ~~~~~~~~l~~~v~~I~~~~~a~~g~~~~~P~ 104 (109)
T PF09685_consen 73 ILLLIVLWLLSLVLSIIGAIKANKGEPYRYPF 104 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCeeecCe
Confidence 33444444566777778888888888888886
No 45
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=40.84 E-value=1.2e+02 Score=25.75 Aligned_cols=61 Identities=16% Similarity=0.135 Sum_probs=39.8
Q ss_pred ccHHHHHHHHHcccCccceeeeEEEEeeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHhhCCCceeEEee
Q 016028 326 INVARLQRDLECIKGVQTIHDLHVWAITVGKLVLSCHVIAEPAVSSSEILDKIRDYCQKTHRIYHVTVQI 395 (396)
Q Consensus 326 ~~~~~i~~~l~~~~~V~~v~~l~~~~~~~~~~~v~v~I~v~~~~~~~~i~~~i~~~l~~~~~v~~vtV~v 395 (396)
...+.+.+.+.++|+|..++. ++ |.+-+-+.+.++ +.+++.+-+.+.+.+..+|.++..++
T Consensus 81 ~~~~~~~~~l~~~p~V~~~~~-----~t-G~~dl~~~v~~~---d~~~l~~~~~~~l~~~~gV~~~~t~i 141 (153)
T PRK11179 81 KDYPSALAKLESLDEVVEAYY-----TT-GHYSIFIKVMCR---SIDALQHVLINKIQTIDEIQSTETLI 141 (153)
T ss_pred ccHHHHHHHHhCCCCEEEEEE-----cc-cCCCEEEEEEEC---CHHHHHHHHHHHhhcCCCeeeEEEEE
Confidence 446788888999998866653 32 345455555655 44555555667777777888776554
No 46
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=39.26 E-value=67 Score=22.39 Aligned_cols=45 Identities=20% Similarity=0.416 Sum_probs=27.6
Q ss_pred HHHHHHHHHcccCccceeeeEEEEeeCCeEEEEEEEEeCCC-CCHHHHHHHHHH
Q 016028 328 VARLQRDLECIKGVQTIHDLHVWAITVGKLVLSCHVIAEPA-VSSSEILDKIRD 380 (396)
Q Consensus 328 ~~~i~~~l~~~~~V~~v~~l~~~~~~~~~~~v~v~I~v~~~-~~~~~i~~~i~~ 380 (396)
.++|++.+.++|||.++ .+- +..+ .+.|..+++ .+.+++.+.+++
T Consensus 13 ~~~v~~~l~~~~GV~~v---~vd-~~~~----~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 13 AKKVEKALSKLPGVKSV---KVD-LETK----TVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp HHHHHHHHHTSTTEEEE---EEE-TTTT----EEEEEESTTTSCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCcEE---EEE-CCCC----EEEEEEecCCCCHHHHHHHHHH
Confidence 57899999999998554 332 2233 333445555 456777666654
No 47
>PRK10263 DNA translocase FtsK; Provisional
Probab=38.55 E-value=4.8e+02 Score=30.62 Aligned_cols=134 Identities=17% Similarity=0.131 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCcC------cchHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhhcCCCCCc-ch
Q 016028 114 IAGFSISLFAVWASGWNATSQYSFG------FNRFEILGALVSVQLIWLIS-------GILVYEAVDRIVHKSPTVN-GQ 179 (396)
Q Consensus 114 ~~s~~i~l~a~~~s~k~~~~~~pfG------~~R~E~l~~li~~~~l~~~~-------~~l~~esi~~li~~~~~~~-~~ 179 (396)
++..++.++..-++.-+.|..|..- ...+=.+|+++..+++.++| +.+++-++..+........ ..
T Consensus 30 LlllAlfL~lALiSYsPsDPSwS~sa~~~~V~Nl~GiVGA~LAD~L~~LFGl~AYLLP~LL~~~a~~l~R~r~~~~~l~~ 109 (1355)
T PRK10263 30 IVLFAVWLMAALLSFNPSDPSWSQTAWHEPIHNLGGMPGAWLADTLFFIFGVMAYTIPVIIVGGCWFAWRHQSSDEYIDY 109 (1355)
T ss_pred HHHHHHHHHHHHHhCCccCCcccccCcccccccccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccccchhhhh
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhhhcccccCCCCcccccccchhhH
Q 016028 180 LMFGVAAFGFLINIIMVTCIGHDHAHHACGHNHHIGGHVHGDDHGPHHEGEKLCAATEENQTNLESNSPIETKMLNINLQ 259 (396)
Q Consensus 180 ~~~~i~~~~lv~n~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~s~~l~ 259 (396)
+.+..-++++++-++..+.+.
T Consensus 110 ~~l~lRliGlLLLLLas~gLa----------------------------------------------------------- 130 (1355)
T PRK10263 110 FAVSLRIIGVLALILTSCGLA----------------------------------------------------------- 130 (1355)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----------------------------------------------------------
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHhhHHHH
Q 016028 260 GAYLHVMADLIQ-SAGVMIAGLILWVKPGWSIVDLSCTLIFAAFALSTTVPML 311 (396)
Q Consensus 260 a~~~~~~~D~l~-s~~vlva~~l~~~~~~~~~~D~i~siii~~~i~~~~~~~~ 311 (396)
.....|... ..|.++|.++..+. ..++-.+++.++.++++..++-++
T Consensus 131 ---a~~~~d~~~~~gGGIIG~lLs~lL--~~LfG~vGa~LILLlllLIGLiLl 178 (1355)
T PRK10263 131 ---AINADDIWYFASGGVIGSLLSTTL--QPLLHSSGGTIALLCVWAAGLTLF 178 (1355)
T ss_pred ---HhcccccccccccchHHHHHHHHH--HHHHhHHHHHHHHHHHHHHHHHHH
No 48
>TIGR02898 spore_YhcN_YlaJ sporulation lipoprotein, YhcN/YlaJ family. YhcN and YlaJ are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic 40-residue C-terminal domain that is not included in the seed alignment for this model. A portion of the low-complexity region between the lipoprotein signal sequence and the main conserved region of the protein family was also excised from the seed alignment.
Probab=37.87 E-value=1.9e+02 Score=25.15 Aligned_cols=61 Identities=20% Similarity=0.255 Sum_probs=38.6
Q ss_pred HHHHHHHHHcccCccceeeeEEEEeeCCeEEEEEEEEeCCCCC---HHHHHHHHHHHHHh-hCCCceeEEe
Q 016028 328 VARLQRDLECIKGVQTIHDLHVWAITVGKLVLSCHVIAEPAVS---SSEILDKIRDYCQK-THRIYHVTVQ 394 (396)
Q Consensus 328 ~~~i~~~l~~~~~V~~v~~l~~~~~~~~~~~v~v~I~v~~~~~---~~~i~~~i~~~l~~-~~~v~~vtV~ 394 (396)
-++|.+.+.++|+| ++..+-- .++..+|-+ .++.+.. .+++..++.+.+++ .+.+.+|.|-
T Consensus 56 A~~Ia~~v~~v~~V---~dA~vvV-tg~~A~Vgv--~~~~~~~~~~~~~iK~~Va~~Vk~~dp~~~~VyVs 120 (158)
T TIGR02898 56 ADEIASEAAKVKGV---KDATVVI-TGNYAYVGV--DLTNGLEGSVTDELKEKVAETVKSTDNRIANVYVS 120 (158)
T ss_pred HHHHHHHHhcCCCC---ceEEEEE-ECCEEEEEE--EcCCCcchhhHHHHHHHHHHHHHhhCCCcceEEEE
Confidence 45566666677776 5555543 455554444 4444332 56888899999988 5568888874
No 49
>COG1279 Lysine efflux permease [General function prediction only]
Probab=37.30 E-value=1.7e+02 Score=26.55 Aligned_cols=60 Identities=23% Similarity=0.106 Sum_probs=45.3
Q ss_pred chhhHHHHHHHHHHHHHHH-HHHHHHHHHHhccCCchhhhHHHHHHHHHHHHhhHHHHHHHHHH
Q 016028 255 NINLQGAYLHVMADLIQSA-GVMIAGLILWVKPGWSIVDLSCTLIFAAFALSTTVPMLKTIFVI 317 (396)
Q Consensus 255 s~~l~a~~~~~~~D~l~s~-~vlva~~l~~~~~~~~~~D~i~siii~~~i~~~~~~~~~~~~~~ 317 (396)
+-.+........+|.+--. ++.-.+.+.. ..+|+.++.-..-++++++.++..++++.+.
T Consensus 34 ~~~l~~~~~c~i~D~~Li~~gv~G~~~li~---~~p~l~~i~~~~G~~FLl~yg~~a~~~a~~~ 94 (202)
T COG1279 34 EYVLPIALLCAISDIVLISAGVFGVGALIA---KSPWLLLIVRWGGAAFLLYYGLLALKSAPRG 94 (202)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 5567777888889976544 3332233322 4789999999999999999999999999984
No 50
>PF10934 DUF2634: Protein of unknown function (DUF2634); InterPro: IPR020288 This entry is represented by the Bacteriophage EJ-1, Orf60. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Bacteriophage EJ-1, Orf60 function has not been characterised. It has been shown to be simialr to XkdS (P54331 from SWISSPROT), which is encoded on a phage-like element (prophage) of PSBX found in Bacillus subtilis.
Probab=37.08 E-value=1.6e+02 Score=23.81 Aligned_cols=51 Identities=10% Similarity=0.020 Sum_probs=36.5
Q ss_pred HHHHHhcCCCCcc-----cHHHHHHHHHcccCccceeeeEEEEeeCCeEEEEEEEEe
Q 016028 314 IFVILMERTPSEI-----NVARLQRDLECIKGVQTIHDLHVWAITVGKLVLSCHVIA 365 (396)
Q Consensus 314 ~~~~Ll~~sp~~~-----~~~~i~~~l~~~~~V~~v~~l~~~~~~~~~~~v~v~I~v 365 (396)
-...|+|...+.+ ....|+++|...|.|.+|.++.+- ..++.+.++..|.-
T Consensus 52 ele~lig~~~~~~~~~sEi~r~I~EaL~~d~rI~~V~~f~f~-~~~~~l~v~f~V~t 107 (112)
T PF10934_consen 52 ELEDLIGKNYPREYVESEIEREIEEALLQDPRITSVENFSFE-WEGDSLYVSFTVTT 107 (112)
T ss_pred hHHHHhcCCCChHHHHHHHHHHHHHHHhcCCCcceEEEEEEE-EECCEEEEEEEEEE
Confidence 3466777733322 235677888889999999999995 46778888877764
No 51
>PF04972 BON: BON domain; InterPro: IPR007055 The BON domain is typically ~60 residues long and has an alpha/beta predicted fold. There is a conserved glycine residue and several hydrophobic regions. This pattern of conservation is more suggestive of a binding or structural function rather than a catalytic function. Most proteobacteria seem to possess one or two BON-containing proteins, typically of the OsmY-type proteins; outside of this group the distribution is more disparate. The OsmY protein is an Escherichia coli 20 kDa outer membrane or periplasmic protein that is expressed in response to a variety of stress conditions, in particular, helping to provide protection against osmotic shock. One hypothesis is that OsmY prevents shrinkage of the cytoplasmic compartment by contacting the phospholipid interfaces surrounding the periplasmic space. The domain architecture of two BON domains alone suggests that these domains contact the surfaces of phospholipids, with each domain contacting a membrane [].; PDB: 2L26_A 2KGS_A 2KSM_A.
Probab=36.07 E-value=19 Score=25.56 Aligned_cols=29 Identities=21% Similarity=0.308 Sum_probs=24.5
Q ss_pred HhcCCCCcccHHHHHHHHHcccCccceee
Q 016028 318 LMERTPSEINVARLQRDLECIKGVQTIHD 346 (396)
Q Consensus 318 Ll~~sp~~~~~~~i~~~l~~~~~V~~v~~ 346 (396)
|.|..|+.+..+++.+.+.+++|+..|.+
T Consensus 30 L~G~v~s~~~~~~a~~~a~~v~gv~~V~n 58 (64)
T PF04972_consen 30 LSGEVPSQEQRDAAERLARSVAGVREVVN 58 (64)
T ss_dssp EEEEESSCHHHHHHHHHHHCC-STSEEEE
T ss_pred EEeeCcHHHHHHhHHhhhccCCCcCEEEE
Confidence 56788888999999999999999988875
No 52
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=36.01 E-value=1.5e+02 Score=25.00 Aligned_cols=24 Identities=17% Similarity=-0.035 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHhheecC
Q 016028 76 KLFCLIIFSLIAMVVEVVGGFKAN 99 (396)
Q Consensus 76 ~l~~~l~~n~~~~v~~l~~g~~s~ 99 (396)
+-.+++++|+++.++-..++.+..
T Consensus 76 ~~qls~v~Nilvsv~~~~~~~~~~ 99 (142)
T PF11712_consen 76 KRQLSTVFNILVSVFAVFFAGWYW 99 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345778888888877766655533
No 53
>KOG1482 consensus Zn2+ transporter [Inorganic ion transport and metabolism]
Probab=34.57 E-value=3.1e+02 Score=27.27 Aligned_cols=73 Identities=10% Similarity=0.048 Sum_probs=56.9
Q ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc------cCCchhhhHHHHHHHHHHHHhhHHHHHHHHHHHhcCC
Q 016028 250 ETKMLNINLQGAYLHVMADLIQSAGVMIAGLILWVK------PGWSIVDLSCTLIFAAFALSTTVPMLKTIFVILMERT 322 (396)
Q Consensus 250 ~~~~~s~~l~a~~~~~~~D~l~s~~vlva~~l~~~~------~~~~~~D~i~siii~~~i~~~~~~~~~~~~~~Ll~~s 322 (396)
+.+.+|..+..++.|.+.|+.+=+..+.+.-+..+- .||.-+|.+++++-...|-.....++++++..++...
T Consensus 93 g~~a~SLAImTDAaHlLsD~~sf~isl~slw~s~~pa~~r~sfG~~R~Evlgal~Sv~~IW~~tgvLV~~Ai~Rl~s~~ 171 (379)
T KOG1482|consen 93 GYKANSLAIMTDAAHLLSDVASFIISLFSLWLSSRPATKRMSFGFHRAEVLGALVSVLLIWVVTGVLVYEAIQRLLSGD 171 (379)
T ss_pred CeeccchhhhhcchHHHHHHHHHHHHHHHHHHccCCCCCceecceehHHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCc
Confidence 446788899999999999998777666665544331 1677789999988878888888899999998888765
No 54
>PF09877 DUF2104: Predicted membrane protein (DUF2104); InterPro: IPR019211 This entry is found in various hypothetical archaeal proteins, has no known function.
Probab=34.46 E-value=29 Score=27.41 Aligned_cols=20 Identities=35% Similarity=0.688 Sum_probs=17.5
Q ss_pred CcchHHHHHHHHHHHHHHHH
Q 016028 138 GFNRFEILGALVSVQLIWLI 157 (396)
Q Consensus 138 G~~R~E~l~~li~~~~l~~~ 157 (396)
||+|.|+..+++.+.+++++
T Consensus 78 GYGr~E~~iG~iiA~l~~~l 97 (99)
T PF09877_consen 78 GYGRIETVIGLIIALLIYLL 97 (99)
T ss_pred CCCeehhhhhHHHHHHHHHH
Confidence 89999999999988887764
No 55
>PRK02047 hypothetical protein; Provisional
Probab=34.40 E-value=1.9e+02 Score=22.57 Aligned_cols=60 Identities=13% Similarity=0.052 Sum_probs=36.3
Q ss_pred ccHHHHHHHHHcccCccceeeeEEEEeeCCeEE-EEEEEEeCCCCCHHHHHHHHHHHHHhhCCCc
Q 016028 326 INVARLQRDLECIKGVQTIHDLHVWAITVGKLV-LSCHVIAEPAVSSSEILDKIRDYCQKTHRIY 389 (396)
Q Consensus 326 ~~~~~i~~~l~~~~~V~~v~~l~~~~~~~~~~~-v~v~I~v~~~~~~~~i~~~i~~~l~~~~~v~ 389 (396)
...+.+.+.++.+..-.+-..+..+.-+.|+|. +++.+.+... +-++.+-+.|.+...|.
T Consensus 28 ~~~~~v~~iv~~~~~~~~~~~i~~k~Ss~GkY~Svtv~v~v~s~----eq~~~iY~~L~~~~~Vk 88 (91)
T PRK02047 28 EFADTIFKVVSVHDPEFDLEKIEERPSSGGNYTGLTITVRATSR----EQLDNIYRALTGHPMVK 88 (91)
T ss_pred hHHHHHHHHHHHhCCCCccCceEEccCCCCeEEEEEEEEEECCH----HHHHHHHHHHhhCCCEE
Confidence 346777777766543333355666666677775 7777776533 33466666676555553
No 56
>KOG1819 consensus FYVE finger-containing proteins [General function prediction only]
Probab=34.21 E-value=1.4e+02 Score=30.60 Aligned_cols=37 Identities=19% Similarity=0.191 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHH
Q 016028 266 MADLIQSAGVMIAGLILWVKPGWSIVDLSCTLIFAAFAL 304 (396)
Q Consensus 266 ~~D~l~s~~vlva~~l~~~~~~~~~~D~i~siii~~~i~ 304 (396)
-.|++--+.|-++++.-.+- -.|.--+--++-++|++
T Consensus 655 se~llhrlfvciagvadqlq--tnfasdirkilksvflm 691 (990)
T KOG1819|consen 655 SEDLLHRLFVCIAGVADQLQ--TNFASDIRKILKSVFLM 691 (990)
T ss_pred HHHHHHHHHHHHHhHHHHHh--hhhHHHHHHHHHHHHhh
Confidence 34667777777776664443 22333444444444443
No 57
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=34.09 E-value=3.5e+02 Score=24.29 Aligned_cols=20 Identities=10% Similarity=0.142 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHhheec
Q 016028 79 CLIIFSLIAMVVEVVGGFKA 98 (396)
Q Consensus 79 ~~l~~n~~~~v~~l~~g~~s 98 (396)
.++.+..+++.+..+..++.
T Consensus 100 ssLl~lg~~aLlsgitaff~ 119 (226)
T COG4858 100 SSLLFLGAMALLSGITAFFQ 119 (226)
T ss_pred ccHHHHHHHHHHHHHHHHHh
Confidence 45555555665555555543
No 58
>PRK10553 assembly protein for periplasmic nitrate reductase; Provisional
Probab=33.62 E-value=2.3e+02 Score=21.99 Aligned_cols=58 Identities=17% Similarity=0.360 Sum_probs=39.6
Q ss_pred ccHHHHHHHHHcccCccceeeeEEEEeeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHhhCCCceeEE
Q 016028 326 INVARLQRDLECIKGVQTIHDLHVWAITVGKLVLSCHVIAEPAVSSSEILDKIRDYCQKTHRIYHVTV 393 (396)
Q Consensus 326 ~~~~~i~~~l~~~~~V~~v~~l~~~~~~~~~~~v~v~I~v~~~~~~~~i~~~i~~~l~~~~~v~~vtV 393 (396)
+..+.+.+.+..+||+ ++|...-..||+++.+. ..+..++.+.+.. ++...||..++.
T Consensus 17 e~~~~V~~~l~~ipg~----Evh~~d~~~GKiVVtiE-----~~~~~~~~~~i~~-I~~l~GVlsa~l 74 (87)
T PRK10553 17 ERISDISTQLNAFPGC----EVAVSDAPSGQLIVVVE-----AEDSETLLQTIES-VRNVEGVLAVSL 74 (87)
T ss_pred HHHHHHHHHHHcCCCc----EEEeecCCCCeEEEEEE-----eCChHHHHHHHHH-HHcCCCceEEEE
Confidence 4578999999999984 55554223478876652 3366777777755 677888877764
No 59
>PRK00907 hypothetical protein; Provisional
Probab=31.91 E-value=2.2e+02 Score=22.29 Aligned_cols=60 Identities=17% Similarity=0.042 Sum_probs=36.8
Q ss_pred cccHHHHHHHHHcccCccceeeeEEEEeeCCeEE-EEEEEEeCCCCCHHHHHHHHHHHHHhhCCC
Q 016028 325 EINVARLQRDLECIKGVQTIHDLHVWAITVGKLV-LSCHVIAEPAVSSSEILDKIRDYCQKTHRI 388 (396)
Q Consensus 325 ~~~~~~i~~~l~~~~~V~~v~~l~~~~~~~~~~~-v~v~I~v~~~~~~~~i~~~i~~~l~~~~~v 388 (396)
+...+.|.+.+++...-.+-..+..+.-+.|+|. +++.|.+.. ++-++.+-+.|.+...|
T Consensus 28 ~~l~~~V~~vv~~h~p~~~~~~i~~r~Ss~GkY~Svtv~i~ats----~eQld~iY~~L~~~~~V 88 (92)
T PRK00907 28 RGLETELPRLLAATGVELLQERISWKHSSSGKYVSVRIGFRAES----REQYDAAHQALRDHPEV 88 (92)
T ss_pred hhHHHHHHHHHHHhCCCCCcCcEEeccCCCCEEEEEEEEEEECC----HHHHHHHHHHHhhCCCE
Confidence 4456778888866432233455666666667765 777776543 34457777777665555
No 60
>cd00292 EF1B Elongation factor 1 beta (EF1B) guanine nucleotide exchange domain. EF1B catalyzes the exchange of GDP bound to the G-protein, EF1A, for GTP, an important step in the elongation cycle of the protein biosynthesis. EF1A binds to and delivers the aminoacyl tRNA to the ribosome. The guanine nucleotide exchange domain of EF1B, which is the alpha subunit in yeast, is responsible for the catalysis of this exchange reaction.
Probab=31.48 E-value=2.5e+02 Score=21.79 Aligned_cols=66 Identities=15% Similarity=0.202 Sum_probs=41.3
Q ss_pred CcccHHHHHHHHHcc-cCccceeeeEEEEeeCCeEEEEEEEEeCCC-CCHHHHHHHHHHHHHhhCCCceeEE
Q 016028 324 SEINVARLQRDLECI-KGVQTIHDLHVWAITVGKLVLSCHVIAEPA-VSSSEILDKIRDYCQKTHRIYHVTV 393 (396)
Q Consensus 324 ~~~~~~~i~~~l~~~-~~V~~v~~l~~~~~~~~~~~v~v~I~v~~~-~~~~~i~~~i~~~l~~~~~v~~vtV 393 (396)
++.+++++++.+++. ++-........--++.|-..+.+.+.++.+ -..+++ ++.+.+.-+|.++.|
T Consensus 15 ~e~Dl~~l~~~Ik~~~~~gl~~~~~~~epiaFGlk~L~i~~vv~D~~~~td~l----ee~i~~~d~VqsveI 82 (88)
T cd00292 15 DEVDLDELEEKIRAILMDGLLWGKSKLEPIAFGLKALQIYCVVEDDEGGTDEL----EEAISEEDGVQSVDV 82 (88)
T ss_pred CCcCHHHHHHHHHHhCcCCcEEEEEEEEEeeeEeeEEEEEEEEEeCCcCcHHH----HHHHhccCCceEEEE
Confidence 345778888888663 444556666666666776666666677544 344555 444444557888776
No 61
>TIGR00439 ftsX putative protein insertion permease FtsX. FtsX is an integral membrane protein encoded in the same operon as signal recognition particle docking protein FtsY and FtsE. It belongs to a family of predicted permeases and may play a role in the insertion of proteins required for potassium transport, cell division, and other activities. FtsE is a hydrophilic nucleotide-binding protein that associates with the inner membrane by means of association with FtsX.
Probab=31.34 E-value=2.5e+02 Score=27.13 Aligned_cols=71 Identities=21% Similarity=0.258 Sum_probs=44.0
Q ss_pred CCCcccHHHHHHHHHcccCccceee---------eEEEEe--------eCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHh
Q 016028 322 TPSEINVARLQRDLECIKGVQTIHD---------LHVWAI--------TVGKLVLSCHVIAEPAVSSSEILDKIRDYCQK 384 (396)
Q Consensus 322 sp~~~~~~~i~~~l~~~~~V~~v~~---------l~~~~~--------~~~~~~v~v~I~v~~~~~~~~i~~~i~~~l~~ 384 (396)
..++.+.+.+.+.+++.|+|.++.- ++-|.- .++-+-..+.|.++++.+..+..+++++++++
T Consensus 75 ~~~~~~~~~l~~~l~~~~~V~~v~~iskeeAl~~l~~~~g~~~~l~~l~~nPLP~si~V~l~~~~~~~~~~~~l~~~l~~ 154 (309)
T TIGR00439 75 ALAQSDADTVVSLLTRDKGVENINYISREDGLAEFQSWSGFGNLLSMLDGNPLPAVFIVTPDPAFTPAEMQAILRDNITK 154 (309)
T ss_pred CCCHHHHHHHHHHHhCCCCccEEEEECHHHHHHHHHHhcCCchhhhhcccCCCCCeEEEEeCCCCChHHHHHHHHHHHhc
Confidence 3445566788888988888877632 222210 01111234555666666666777888988988
Q ss_pred hCCCceeE
Q 016028 385 THRIYHVT 392 (396)
Q Consensus 385 ~~~v~~vt 392 (396)
.++|.++.
T Consensus 155 ~~gV~~v~ 162 (309)
T TIGR00439 155 IPGVEEVR 162 (309)
T ss_pred CCCCCccc
Confidence 77887764
No 62
>PRK09579 multidrug efflux protein; Reviewed
Probab=31.33 E-value=1.9e+02 Score=32.98 Aligned_cols=53 Identities=8% Similarity=0.061 Sum_probs=30.2
Q ss_pred HHHHHHHHHc-ccCccceeeeEEEEeeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHH
Q 016028 328 VARLQRDLEC-IKGVQTIHDLHVWAITVGKLVLSCHVIAEPAVSSSEILDKIRDYCQ 383 (396)
Q Consensus 328 ~~~i~~~l~~-~~~V~~v~~l~~~~~~~~~~~v~v~I~v~~~~~~~~i~~~i~~~l~ 383 (396)
.+.|.+-+++ +.++.++++++-... .|.. .+.++++.+.+.++..+++++++.
T Consensus 60 E~~Vt~plE~~L~~v~gi~~i~S~S~-~G~s--~I~v~f~~g~d~~~a~~~v~~~v~ 113 (1017)
T PRK09579 60 QGYITQPLQQSLASAEGIDYMTSVSR-QNFS--IISIYARIGADSDRLFTELLAKAN 113 (1017)
T ss_pred HHHHHHHHHHHhcCCCCceEEEEEec-CCeE--EEEEEEECCCCHHHHHHHHHHHHH
Confidence 3444455533 456666677777764 4544 445567777776555555555553
No 63
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=31.27 E-value=5.8e+02 Score=26.02 Aligned_cols=66 Identities=11% Similarity=0.118 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCCcccHHHHHHH
Q 016028 267 ADLIQSAGVMIAGLILWVKPGWSIVDLSCTLIFAAFALSTTVPMLKTIFVILMERTPSEINVARLQRD 334 (396)
Q Consensus 267 ~D~l~s~~vlva~~l~~~~~~~~~~D~i~siii~~~i~~~~~~~~~~~~~~Ll~~sp~~~~~~~i~~~ 334 (396)
.......+.+...++.++.++|.|+=-+.++.-++.++. +-+..|+-+-|..+...++..+.+++.
T Consensus 212 ~~~~~~~~~~~~~~~a~~~~~Wr~~~~~~~~~~~~~~~~--~~l~~Es~rwl~~~g~~~~a~~~l~~~ 277 (521)
T KOG0255|consen 212 GGFFFVGGLMLPAGAAYITRDWRWLFWIISIPSGLFLLL--WFLPPESPRWLLSKGRIDEAIKILKKI 277 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH--HHccCcChHHHHHcCchHHHHHHHHHH
Confidence 555666666666677777668887777777766666666 555557777777776654433333333
No 64
>PF11654 DUF2665: Protein of unknown function (DUF2665); InterPro: IPR024242 This entry represents the non classical export protein 1 family. Family members are Involved in a novel pathway of export of proteins that lack a cleavable signal sequence [].; GO: 0009306 protein secretion
Probab=31.14 E-value=43 Score=22.79 Aligned_cols=19 Identities=11% Similarity=0.039 Sum_probs=14.7
Q ss_pred chhhhHHHHHHHHHHHHhh
Q 016028 289 SIVDLSCTLIFAAFALSTT 307 (396)
Q Consensus 289 ~~~D~i~siii~~~i~~~~ 307 (396)
.++||+.|+++++.-.+.-
T Consensus 5 r~lDP~~av~iG~~ayyl~ 23 (47)
T PF11654_consen 5 RFLDPLFAVFIGTSAYYLY 23 (47)
T ss_pred hhhhhHHHHHHHHHHHHHH
Confidence 4799999999887765543
No 65
>COG4035 Predicted membrane protein [Function unknown]
Probab=31.11 E-value=34 Score=26.73 Aligned_cols=21 Identities=29% Similarity=0.567 Sum_probs=16.3
Q ss_pred CcchHHHHHHHHHHHHHHHHH
Q 016028 138 GFNRFEILGALVSVQLIWLIS 158 (396)
Q Consensus 138 G~~R~E~l~~li~~~~l~~~~ 158 (396)
||+|+|++.+-+.+.++|+-+
T Consensus 85 GYGR~Etv~Gt~LA~l~wL~~ 105 (108)
T COG4035 85 GYGRVETVVGTFLAVLLWLYF 105 (108)
T ss_pred CCceeehhHHHHHHHHHHHhh
Confidence 899999999866666666544
No 66
>PRK10555 aminoglycoside/multidrug efflux system; Provisional
Probab=30.44 E-value=1.9e+02 Score=33.01 Aligned_cols=61 Identities=8% Similarity=0.185 Sum_probs=32.4
Q ss_pred cCCCCcccHHHHHHHHHc-ccCccceeeeEEEEeeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHH
Q 016028 320 ERTPSEINVARLQRDLEC-IKGVQTIHDLHVWAITVGKLVLSCHVIAEPAVSSSEILDKIRDYCQ 383 (396)
Q Consensus 320 ~~sp~~~~~~~i~~~l~~-~~~V~~v~~l~~~~~~~~~~~v~v~I~v~~~~~~~~i~~~i~~~l~ 383 (396)
|++|.+. .+.|.+-+++ +.++.++++++-.....|... +.++++++.+.++..+++++++.
T Consensus 51 Gasp~~v-E~~Vt~plE~~l~~v~gv~~i~S~S~~~G~s~--i~v~f~~g~d~~~a~~~V~~~v~ 112 (1037)
T PRK10555 51 GASAQTL-ENTVTQVIEQNMTGLDNLMYMSSQSSGTGQAS--VTLSFKAGTDPDEAVQQVQNQLQ 112 (1037)
T ss_pred CCCHHHH-HHHHhHHHHHHhcCCCCceEEEEEecCCCeEE--EEEEEECCCCHHHHHHHHHHHHH
Confidence 4444333 4444444432 455666677776543245444 44566677776655555555554
No 67
>PRK10503 multidrug efflux system subunit MdtB; Provisional
Probab=30.27 E-value=2.1e+02 Score=32.81 Aligned_cols=60 Identities=8% Similarity=0.082 Sum_probs=31.0
Q ss_pred cCCCCcccHHHHHHHHHc-ccCccceeeeEEEEeeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHH
Q 016028 320 ERTPSEINVARLQRDLEC-IKGVQTIHDLHVWAITVGKLVLSCHVIAEPAVSSSEILDKIRDYCQ 383 (396)
Q Consensus 320 ~~sp~~~~~~~i~~~l~~-~~~V~~v~~l~~~~~~~~~~~v~v~I~v~~~~~~~~i~~~i~~~l~ 383 (396)
|++|.+ ..+.+.+.+++ +.++.++++++.+.. .|...+.+ .++.+.+.++..+++++++.
T Consensus 62 Gas~~~-vE~~Vt~piE~~l~~v~gv~~i~S~S~-~G~s~i~v--~f~~g~d~~~a~~ev~~~i~ 122 (1040)
T PRK10503 62 GASPDV-MTSAVTAPLERQFGQMSGLKQMSSQSS-GGASVITL--QFQLTLPLDVAEQEVQAAIN 122 (1040)
T ss_pred CCCHHH-HHHHHHHHHHHHhcCCCCccEEEEEec-CCeEEEEE--EEECCCChHHHHHHHHHHHH
Confidence 444433 23444444433 455555677777764 45554444 55666665544444554443
No 68
>PF03927 NapD: NapD protein; InterPro: IPR005623 This entry represents NapD, the twin-arginine signal-peptide-binding chaperone for NapA, functioning as an assembly protein for the periplasmic nitrate reductase NapABC. The periplasmic NapABC enzyme likely functions during growth in nitrate-limited environments [].; PDB: 2JSX_A 2PQ4_A.
Probab=30.03 E-value=2.4e+02 Score=21.29 Aligned_cols=57 Identities=25% Similarity=0.344 Sum_probs=39.8
Q ss_pred ccHHHHHHHHHcccCccceeeeEEEEeeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHhhCCCceeEE
Q 016028 326 INVARLQRDLECIKGVQTIHDLHVWAITVGKLVLSCHVIAEPAVSSSEILDKIRDYCQKTHRIYHVTV 393 (396)
Q Consensus 326 ~~~~~i~~~l~~~~~V~~v~~l~~~~~~~~~~~v~v~I~v~~~~~~~~i~~~i~~~l~~~~~v~~vtV 393 (396)
+..+.+.+.+.++||+ ++|... ..||+++.+. ..+.+++.+.+.. |+...||.+++.
T Consensus 15 ~~~~~v~~~l~~~~gv----EVh~~~-~~GKiVVtiE-----~~~~~~~~~~~~~-i~~l~GVlsa~l 71 (79)
T PF03927_consen 15 ERLEEVAEALAAIPGV----EVHAVD-EDGKIVVTIE-----AESSEEEVDLIDA-INALPGVLSASL 71 (79)
T ss_dssp CCHHHHHHHHCCSTTE----EEEEEE-TTTEEEEEEE-----ESSHHHHHHHHHH-HCCSTTEEEEEE
T ss_pred hhHHHHHHHHHcCCCc----EEEeeC-CCCeEEEEEE-----eCChHHHHHHHHH-HHcCCCceEEEE
Confidence 4689999999999996 455543 2388877662 3356777677755 777888877654
No 69
>COG0581 PstA ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism]
Probab=29.59 E-value=3.8e+02 Score=25.80 Aligned_cols=57 Identities=16% Similarity=0.220 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc----cCCchhhhHHHHHHHHHHHHhhHHHHHHHH
Q 016028 259 QGAYLHVMADLIQSAGVMIAGLILWVK----PGWSIVDLSCTLIFAAFALSTTVPMLKTIF 315 (396)
Q Consensus 259 ~a~~~~~~~D~l~s~~vlva~~l~~~~----~~~~~~D~i~siii~~~i~~~~~~~~~~~~ 315 (396)
-........|.+.++-.++.++..+.. .++.+-=..+++.++++++-.-.+...|+.
T Consensus 107 ~t~~ir~~i~~La~vPSIV~GLFg~~~fV~~~g~~~S~laGaLaLall~LP~iirtteeaL 167 (292)
T COG0581 107 LTKVIRFAIDILASVPSIVYGLFGLGFFVVTLGFGFSALAGALALALLMLPVVIRTTEEAL 167 (292)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678889999998777776664431 155444555666666666655555444443
No 70
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=29.13 E-value=2.3e+02 Score=20.64 Aligned_cols=58 Identities=19% Similarity=0.136 Sum_probs=41.0
Q ss_pred cHHHHHHHHHcccCccceeeeEEEEeeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHhhCCC
Q 016028 327 NVARLQRDLECIKGVQTIHDLHVWAITVGKLVLSCHVIAEPAVSSSEILDKIRDYCQKTHRI 388 (396)
Q Consensus 327 ~~~~i~~~l~~~~~V~~v~~l~~~~~~~~~~~v~v~I~v~~~~~~~~i~~~i~~~l~~~~~v 388 (396)
-..++.+.+.+.. .++.+++...+ ++.+.+.+.+.+|++.+..++.+.++...+ +.++
T Consensus 12 iv~~vt~~la~~~--~nI~dl~~~~~-~~~f~~~~~v~~p~~~~~~~l~~~l~~l~~-~l~l 69 (75)
T cd04870 12 LTSALTEVLAAHG--VRILDVGQAVI-HGRLSLGILVQIPDSADSEALLKDLLFKAH-ELGL 69 (75)
T ss_pred HHHHHHHHHHHCC--CCEEecccEEE-cCeeEEEEEEEcCCCCCHHHHHHHHHHHHH-HcCc
Confidence 3567777776654 56777765554 467778888888888788888888888664 4554
No 71
>PRK15127 multidrug efflux system protein AcrB; Provisional
Probab=29.06 E-value=2.1e+02 Score=32.73 Aligned_cols=61 Identities=8% Similarity=0.121 Sum_probs=33.0
Q ss_pred cCCCCcccHHHHHHHHHc-ccCccceeeeEEEEeeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHH
Q 016028 320 ERTPSEINVARLQRDLEC-IKGVQTIHDLHVWAITVGKLVLSCHVIAEPAVSSSEILDKIRDYCQ 383 (396)
Q Consensus 320 ~~sp~~~~~~~i~~~l~~-~~~V~~v~~l~~~~~~~~~~~v~v~I~v~~~~~~~~i~~~i~~~l~ 383 (396)
|++| ++..+.|.+-+++ +.+|.++++++-.....|.. .+.++++.+.+.+...+++++++.
T Consensus 51 Gasp-~~vE~~Vt~piE~~l~~v~gi~~i~S~S~~~G~s--~I~v~f~~g~d~~~a~~~V~~~i~ 112 (1049)
T PRK15127 51 GADA-KTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTV--QITLTFESGTDADIAQVQVQNKLQ 112 (1049)
T ss_pred CCCH-HHHHHHhhHHHHHHhcCCCCceEEEEEecCCceE--EEEEEEECCCChHHHHHHHHHHHH
Confidence 3444 3334555555533 56666677777665323444 444456666666555555555554
No 72
>COG0841 AcrB Cation/multidrug efflux pump [Defense mechanisms]
Probab=28.44 E-value=2.4e+02 Score=32.24 Aligned_cols=59 Identities=10% Similarity=0.147 Sum_probs=31.6
Q ss_pred cCCCCcccHHHHHHHHHc-ccCccceeeeEEEEeeCCeEEEEEEEEeCCCCCHHHHHHHHHHHH
Q 016028 320 ERTPSEINVARLQRDLEC-IKGVQTIHDLHVWAITVGKLVLSCHVIAEPAVSSSEILDKIRDYC 382 (396)
Q Consensus 320 ~~sp~~~~~~~i~~~l~~-~~~V~~v~~l~~~~~~~~~~~v~v~I~v~~~~~~~~i~~~i~~~l 382 (396)
|++| ++..+++.+.+++ +.++.+++++.-... .|...++ ++++.+.+.++...++|+++
T Consensus 52 GAsa-e~ve~~Vt~piE~~l~~i~gi~~i~S~S~-~G~s~it--v~F~~~~d~d~A~~~V~~kv 111 (1009)
T COG0841 52 GASA-ETVEDSVTQPIEQQLNGLDGLDYMSSTSS-SGSSSIT--VTFELGTDPDTAAVQVQNKI 111 (1009)
T ss_pred CCCH-HHHHHHHhHHHHHHHhcCCCccEEEEEEc-CCcEEEE--EEEeCCCChHHHHHHHHHHH
Confidence 3444 3334556666633 566777787777764 4655444 45555555543333444443
No 73
>PHA02568 J baseplate assembly protein; Provisional
Probab=28.37 E-value=2.3e+02 Score=27.39 Aligned_cols=64 Identities=20% Similarity=0.187 Sum_probs=40.5
Q ss_pred cCCCCcccHHHHHHHHHcccCccce-eeeEEEEeeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHh
Q 016028 320 ERTPSEINVARLQRDLECIKGVQTI-HDLHVWAITVGKLVLSCHVIAEPAVSSSEILDKIRDYCQK 384 (396)
Q Consensus 320 ~~sp~~~~~~~i~~~l~~~~~V~~v-~~l~~~~~~~~~~~v~v~I~v~~~~~~~~i~~~i~~~l~~ 384 (396)
+..|+++.++++++.+.. +++.-+ +.+.+.....-.|.+++.+.+.++.+...+.+.++..++.
T Consensus 178 ~G~ps~~Ll~~V~~~l~~-e~vrPl~d~VtV~sa~~v~~~I~a~l~l~~g~~~~~v~~~a~~~l~~ 242 (300)
T PHA02568 178 NGTASEDLLAAVRAALNR-EDVRPVTDRVTVQSATIVPYQIRATLYLYPGPDSEVILAAAEARLQA 242 (300)
T ss_pred CCCCCHHHHHHHHHHhcc-cccCCCCCEEEEECCEEEEEEEEEEEEEcCCCChHHHHHHHHHHHHH
Confidence 346888888999998843 333333 3355443222256788999998888776666666655543
No 74
>PF07687 M20_dimer: Peptidase dimerisation domain This family only corresponds to M20 family; InterPro: IPR011650 This domain consists of 4 beta strands and two alpha helices which make up the dimerisation surface of members of the MEROPS peptidase family M20 []. This family includes a range of zinc exopeptidases: carboxypeptidases, dipeptidases and specialised aminopeptidases [].; GO: 0016787 hydrolase activity; PDB: 3GB0_A 2F7V_A 1R3N_C 2VL1_D 2V8V_C 1R43_B 2V8G_B 2V8H_D 2V8D_A 3PFE_A ....
Probab=27.91 E-value=96 Score=24.16 Aligned_cols=31 Identities=19% Similarity=0.219 Sum_probs=27.1
Q ss_pred CCeEEEEEEEEeCCCCCHHHHHHHHHHHHHh
Q 016028 354 VGKLVLSCHVIAEPAVSSSEILDKIRDYCQK 384 (396)
Q Consensus 354 ~~~~~v~v~I~v~~~~~~~~i~~~i~~~l~~ 384 (396)
++.+.+.+++.+.|..+.+++.+.+++.+++
T Consensus 76 p~~a~~~~~~R~~p~~~~~~i~~~i~~~~~~ 106 (111)
T PF07687_consen 76 PDEATLTVDIRYPPGEDLEEIKAEIEAAVEK 106 (111)
T ss_dssp SSEEEEEEEEEESTCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEEECCCcchHHHHHHHHHHHHHH
Confidence 5678899999999999999999999998865
No 75
>PRK11169 leucine-responsive transcriptional regulator; Provisional
Probab=27.83 E-value=2.6e+02 Score=24.01 Aligned_cols=61 Identities=5% Similarity=0.013 Sum_probs=37.4
Q ss_pred ccHHHHHHHHHcccCccceeeeEEEEeeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHhhCCCceeEEee
Q 016028 326 INVARLQRDLECIKGVQTIHDLHVWAITVGKLVLSCHVIAEPAVSSSEILDKIRDYCQKTHRIYHVTVQI 395 (396)
Q Consensus 326 ~~~~~i~~~l~~~~~V~~v~~l~~~~~~~~~~~v~v~I~v~~~~~~~~i~~~i~~~l~~~~~v~~vtV~v 395 (396)
...+++.+.+.+.|+|..++. ++| .+-+-+.+.++ +.+++.+-+.+.+.+..+|.++..++
T Consensus 88 ~~~~~~~~~l~~~p~V~~~~~-----vtG-~~d~~l~v~~~---~~~~l~~~l~~~l~~~~gV~~~~t~i 148 (164)
T PRK11169 88 DVFEQFNAAVQKLEEIQECHL-----VSG-DFDYLLKTRVP---DMSAYRKLLGETLLRLPGVNDTRTYV 148 (164)
T ss_pred HHHHHHHHHHhcCcceeeeee-----ecC-CCCEEEEEEEC---CHHHHHHHHHHHhhcCCCeeeEEEEE
Confidence 346778888899998877663 333 33334444544 33455455556677777888776543
No 76
>KOG4349 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.36 E-value=3.5e+02 Score=22.44 Aligned_cols=39 Identities=21% Similarity=0.399 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCcCcchHHHHHHHHHHHHHHHHHH
Q 016028 111 LTDIAGFSISLFAVWASGWNATSQYSFGFNRFEILGALVSVQLIWLISG 159 (396)
Q Consensus 111 l~D~~s~~i~l~a~~~s~k~~~~~~pfG~~R~E~l~~li~~~~l~~~~~ 159 (396)
+....+..++++++| +|||| |+-++..++.+++.=+.+.
T Consensus 59 fih~~A~ilalFTLR--------kHkyg--rF~si~iliMgfi~P~~~G 97 (143)
T KOG4349|consen 59 FIHLGATILALFTLR--------KHKYG--RFISIPILIMGFIIPFVFG 97 (143)
T ss_pred HHHhhHHHHHHHHhh--------cCccc--eeeehHHHHHHHHHHHHhc
Confidence 344555667778776 56776 5555555665555444443
No 77
>PF01390 SEA: SEA domain; InterPro: IPR000082 SEA is an extracellular domain associated with O-glycosylation []. Proteins found to contain SEA-modules include, agrin, enterokinase, 63 kDa Strongylocentrotus purpuratus (Purple sea urchin) sperm protein, perlecan (heparan sulphate proteoglycan core, mucin 1 and the cell surface antigen, 114/A10, and two functionally uncharacterised, probably extracellular, Caenorhabditis elegans proteins. Despite the functional diversity of these adhesive proteins, a common denominator seems to be their existence in heavily glycosylated environments. In addition, the better characterised proteins all contain O-glycosidic-linked carbohydrates such as heparan sulphate that contribute considerably to their molecular masses. The common module might regulate or assist binding to neighbouring carbohydrate moieties. Enterokinase, the initiator of intestinal digestion, is a mosaic protease composed of a distinctive assortment of domains []. ; PDB: 2ACM_B 1IVZ_A 2E7V_A.
Probab=27.27 E-value=3e+02 Score=21.32 Aligned_cols=43 Identities=16% Similarity=0.343 Sum_probs=33.3
Q ss_pred cceeeeEEEEeeCCeEEEEEEEEeCCCCC--HHHHHHHHHHHHHh
Q 016028 342 QTIHDLHVWAITVGKLVLSCHVIAEPAVS--SSEILDKIRDYCQK 384 (396)
Q Consensus 342 ~~v~~l~~~~~~~~~~~v~v~I~v~~~~~--~~~i~~~i~~~l~~ 384 (396)
..+..++++.+..|.+.++..+.+.+... ..++.+.++..+.+
T Consensus 51 ~~~~~~~I~~f~~gsViv~~~~~f~~~~~~~~~~~~~~l~~~l~~ 95 (107)
T PF01390_consen 51 PGFVGVTITSFRPGSVIVDFDVIFDPPSSAPPADIEEALQNALQQ 95 (107)
T ss_dssp TTEEEEEEEEEEETEEEEEEEEEEETTT-S-HHHHHHHHHHHHCC
T ss_pred CCcceEEEEEEECCCEEEEEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 67888899999889999999999955543 45677778777765
No 78
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=26.52 E-value=3.6e+02 Score=24.78 Aligned_cols=30 Identities=7% Similarity=0.124 Sum_probs=22.6
Q ss_pred CCCCCcCcchHHHHHHHHHHHHHHHHHHHH
Q 016028 132 TSQYSFGFNRFEILGALVSVQLIWLISGIL 161 (396)
Q Consensus 132 ~~~~pfG~~R~E~l~~li~~~~l~~~~~~l 161 (396)
..++..|-.++|.+..++-+++++++++..
T Consensus 51 ~~~~~~~~~~lE~~WtviP~iil~~l~~~s 80 (228)
T MTH00140 51 SCRTILEAQKLETIWTIVPALILVFLALPS 80 (228)
T ss_pred CCccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 356777999999999888777776665543
No 79
>PF08002 DUF1697: Protein of unknown function (DUF1697); InterPro: IPR012545 This family contains many hypothetical bacterial proteins.; PDB: 2HIY_B.
Probab=26.51 E-value=2.4e+02 Score=23.66 Aligned_cols=52 Identities=21% Similarity=0.386 Sum_probs=37.1
Q ss_pred ccHHHHHHHHHcccCccceeeeEEEEeeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHhhCCC
Q 016028 326 INVARLQRDLECIKGVQTIHDLHVWAITVGKLVLSCHVIAEPAVSSSEILDKIRDYCQKTHRI 388 (396)
Q Consensus 326 ~~~~~i~~~l~~~~~V~~v~~l~~~~~~~~~~~v~v~I~v~~~~~~~~i~~~i~~~l~~~~~v 388 (396)
..++.+++.+++. +..+++.| +..|+++.+ ++.+..++..++++.|++.+|.
T Consensus 19 i~MaeLr~~l~~~----Gf~~V~Ty-i~SGNvvf~------~~~~~~~l~~~ie~~l~~~fG~ 70 (137)
T PF08002_consen 19 IKMAELREALEDL----GFTNVRTY-IQSGNVVFE------SDRDPAELAAKIEKALEERFGF 70 (137)
T ss_dssp --HHHHHHHHHHC----T-EEEEEE-TTTTEEEEE------ESS-HHHHHHHHHHHHHHH-TT
T ss_pred ccHHHHHHHHHHc----CCCCceEE-EeeCCEEEe------cCCChHHHHHHHHHHHHHhcCC
Confidence 4577888888774 46888888 467777655 5678899999999999999984
No 80
>PRK04201 zinc transporter ZupT; Provisional
Probab=26.29 E-value=5.4e+02 Score=24.06 Aligned_cols=29 Identities=3% Similarity=0.024 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016028 141 RFEILGALVSVQLIWLISGILVYEAVDRI 169 (396)
Q Consensus 141 R~E~l~~li~~~~l~~~~~~l~~esi~~l 169 (396)
.+..+-++..|+++.....-++-|+.+.+
T Consensus 35 ~l~~~lafAaGvml~~~~~~LiPea~~~~ 63 (265)
T PRK04201 35 FLSFSLGFAAGVMLYVSFMEILPKALAAL 63 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777777777777888988865
No 81
>PRK09577 multidrug efflux protein; Reviewed
Probab=26.14 E-value=2.7e+02 Score=31.85 Aligned_cols=60 Identities=8% Similarity=0.054 Sum_probs=30.9
Q ss_pred cCCCCcccHHHHHHHHHc-ccCccceeeeEEEEeeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHH
Q 016028 320 ERTPSEINVARLQRDLEC-IKGVQTIHDLHVWAITVGKLVLSCHVIAEPAVSSSEILDKIRDYCQ 383 (396)
Q Consensus 320 ~~sp~~~~~~~i~~~l~~-~~~V~~v~~l~~~~~~~~~~~v~v~I~v~~~~~~~~i~~~i~~~l~ 383 (396)
|.+|.+ ..+.+.+-+++ +.++.++++++.... .|. ..+.++++.+.+.+....++++++.
T Consensus 51 Gasp~~-VE~~Vt~plE~~L~~v~gv~~i~S~S~-~G~--s~I~v~f~~g~d~~~a~~~V~~~v~ 111 (1032)
T PRK09577 51 GASAQV-VEESVTALIEREMNGAPGLLYTSATSS-AGQ--ASLSLTFKQGVNADLAAVEVQNRLK 111 (1032)
T ss_pred CCCHHH-HHHHHHHHHHHHhcCCCCceEEEEEec-CCe--EEEEEEEECCCChHHHHHHHHHHHH
Confidence 444433 23444444432 445555667776653 454 4556677777775544444444443
No 82
>PRK10614 multidrug efflux system subunit MdtC; Provisional
Probab=25.18 E-value=2.7e+02 Score=31.78 Aligned_cols=47 Identities=13% Similarity=0.173 Sum_probs=23.6
Q ss_pred HHHHHHHcccCccceeeeEEEEeeCCeEEEEEEEEeCCCCCHHHHHHHHHHHH
Q 016028 330 RLQRDLECIKGVQTIHDLHVWAITVGKLVLSCHVIAEPAVSSSEILDKIRDYC 382 (396)
Q Consensus 330 ~i~~~l~~~~~V~~v~~l~~~~~~~~~~~v~v~I~v~~~~~~~~i~~~i~~~l 382 (396)
.+++.+.+++| +++++... ..|...+.+ +++.+.+.++..+++++++
T Consensus 66 piE~~l~~i~g---v~~i~S~s-~~G~s~i~l--~f~~~~d~~~a~~~v~~~v 112 (1025)
T PRK10614 66 PLERSLGRIAG---VNEMTSSS-SLGSTRIIL--QFDFDRDINGAARDVQAAI 112 (1025)
T ss_pred HHHHHhcCCCC---ceEEEEEe-cCCeEEEEE--EEECCCChHHHHHHHHHHH
Confidence 34444444454 56666554 355555554 5555555444444444444
No 83
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=24.75 E-value=3.2e+02 Score=22.38 Aligned_cols=45 Identities=7% Similarity=0.158 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcC--CCCCcchhHHHHHHHHHH
Q 016028 146 GALVSVQLIWLISGILVYEAVDRIVHK--SPTVNGQLMFGVAAFGFL 190 (396)
Q Consensus 146 ~~li~~~~l~~~~~~l~~esi~~li~~--~~~~~~~~~~~i~~~~lv 190 (396)
=++..+++|+++|..++.-++--+.++ .........++++++.++
T Consensus 42 K~I~la~~Lli~G~~li~~g~l~~~~~i~~~~~~~~~llilG~L~fI 88 (115)
T PF05915_consen 42 KSIALAVFLLIFGTVLIIIGLLLFFGHIDGDRDRGWALLILGILCFI 88 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccchHHHHHHHHHh
Confidence 345555566666666655555555444 223344444555555544
No 84
>PF01773 Nucleos_tra2_N: Na+ dependent nucleoside transporter N-terminus; InterPro: IPR002668 This entry contains nucleoside transport proteins. S282_RAT is a purine-specific Na+-nucleoside cotransporter localised to the bile canalicular membrane []. S281_RAT is a a Na+-dependent nucleoside transporter selective for pyrimidine nucleosides and adenosine it also transports the anti-viral nucleoside analogues AZT and ddC [].; GO: 0005415 nucleoside:sodium symporter activity, 0006810 transport, 0016020 membrane; PDB: 3TIJ_A.
Probab=24.25 E-value=3.1e+02 Score=20.51 Aligned_cols=53 Identities=9% Similarity=0.056 Sum_probs=30.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhheecChHHHHHhhHHHHHHHHHHHHHHH
Q 016028 70 RSKSAIKLFCLIIFSLIAMVVEVVGGFKANSLAVMTDAAHLLTDIAGFSISLF 122 (396)
Q Consensus 70 ~~~~~~~l~~~l~~n~~~~v~~l~~g~~s~S~aL~aDa~hsl~D~~s~~i~l~ 122 (396)
++...|.+.+.+.+.++++..=+-...-..-..-++|++..+.|....+..+.
T Consensus 18 k~I~wr~V~~gl~lQ~~la~~vl~~~~G~~~~~~i~~~~~~ll~~~~~G~~Fv 70 (75)
T PF01773_consen 18 KAIKWRTVIWGLGLQFVLALFVLKTPAGRDAFEWISDGFTALLDYANAGSSFV 70 (75)
T ss_dssp GG--HHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCChHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHh
Confidence 34455666677776655544433333322455667777777777777666543
No 85
>PF07290 DUF1449: Protein of unknown function (DUF1449); InterPro: IPR010840 This family consists of several bacterial proteins of around 210 residues in length. The function of this family is unknown.
Probab=24.16 E-value=4.9e+02 Score=23.56 Aligned_cols=26 Identities=23% Similarity=0.292 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHhheecChHH
Q 016028 77 LFCLIIFSLIAMVVEVVGGFKANSLA 102 (396)
Q Consensus 77 l~~~l~~n~~~~v~~l~~g~~s~S~a 102 (396)
..+++.+-+++.++|+++-++..|.+
T Consensus 8 f~~al~~vl~lg~lE~i~l~~G~s~s 33 (202)
T PF07290_consen 8 FSIALALVLLLGVLEIIGLLFGLSLS 33 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccH
Confidence 34667777888888888766666643
No 86
>PF04865 Baseplate_J: Baseplate J-like protein; InterPro: IPR006949 The temperate bacteriophage P2 has four defined tail genes: V, J, W and I. Their order is the late gene promoter, VWJI, followed by the tail fibre genes H and G and then a transcription terminator. BAP V protein is the small spike at the tip of the tail and basal plate assembly protein J lies at the edge of the baseplate []. This family also includes a number of bacterial homologues, which are thought to have been horizontally transferred.
Probab=23.62 E-value=4.3e+02 Score=24.08 Aligned_cols=53 Identities=17% Similarity=0.305 Sum_probs=35.7
Q ss_pred cHHHHHHHHHcc-cCccceeeeEEEEeeCCeEEEEEEEEeCCCCCHHHHHHHHHHHH
Q 016028 327 NVARLQRDLECI-KGVQTIHDLHVWAITVGKLVLSCHVIAEPAVSSSEILDKIRDYC 382 (396)
Q Consensus 327 ~~~~i~~~l~~~-~~V~~v~~l~~~~~~~~~~~v~v~I~v~~~~~~~~i~~~i~~~l 382 (396)
.....+..+++. +||.++.-+.-|. ++|. +.+.|.-..+....++.+++++.|
T Consensus 120 t~~dy~~~a~~~~~gV~~v~v~~~~~-~~G~--V~v~v~~~~g~~~~~l~~~V~~~i 173 (243)
T PF04865_consen 120 TADDYEYWALSVSPGVADVKVYPNWN-GPGT--VDVYVLGANGAPSQELLAAVQAYI 173 (243)
T ss_pred CHHHHHHHHHHhCCCceEEEEecCCC-CCCE--EEEEEccCCCCCCHHHHHHHHHHh
Confidence 356677777777 8876666666554 3444 455555545556788889999999
No 87
>PF10002 DUF2243: Predicted membrane protein (DUF2243); InterPro: IPR018719 This entry includes membrane proteins of unknown function.
Probab=23.58 E-value=3.8e+02 Score=22.90 Aligned_cols=57 Identities=14% Similarity=0.182 Sum_probs=38.0
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016028 101 LAVMTDAAHLLTDIAGFSISLFAVWASGWNATSQYSFGFNRFEILGALVSVQLIWLISGILVYEAV 166 (396)
Q Consensus 101 ~aL~aDa~hsl~D~~s~~i~l~a~~~s~k~~~~~~pfG~~R~E~l~~li~~~~l~~~~~~l~~esi 166 (396)
..+++|++--.+.-+.....++-.+.+.++.+...+ .....+.+++..+.+=++|++
T Consensus 43 ~n~~~DGLFHa~~~~~~~~Gl~lL~r~~~r~~~~~~---------~~~~~g~~l~G~G~Fnl~dG~ 99 (143)
T PF10002_consen 43 LNLLSDGLFHAFTWVATVAGLFLLWRADRRRRRPWS---------GRRLWGGVLLGWGLFNLVDGV 99 (143)
T ss_pred hhhHHhhHHHHHHHHHHHHHHHHHHHhhhccccCcc---------chhhHHHHHHHhhHHHHHHHH
Confidence 568899988888777777777777755554443333 344555666677777777775
No 88
>PRK02935 hypothetical protein; Provisional
Probab=23.17 E-value=2.3e+02 Score=22.80 Aligned_cols=20 Identities=10% Similarity=0.247 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 016028 181 MFGVAAFGFLINIIMVTCIG 200 (396)
Q Consensus 181 ~~~i~~~~lv~n~~~~~~~~ 200 (396)
.++++++.++...+.++|.+
T Consensus 43 fm~~G~l~~l~S~vvYFwiG 62 (110)
T PRK02935 43 FMLLGFLAVIASTVVYFWIG 62 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34466777777777888865
No 89
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []. The E. coli AcrB protein is a transporter that is energized by proton-motive force and that shows the widest substrate specificity among all known multidrug pumps, ranging from most of the currently used antibiotics, disinfectants, dyes, and detergents to simple solvents. The structure of ligand-free AcrB shows that it is a homotrimer of 110kDa per subunit. Each subunit contains 12 transmembrane helices and two large periplasmic domains (each exceeding 300 residues) between helices 1 and 2, and helices 7 and 8. X-ray analysis of the overexpressed AcrB protein demonstrated that the three periplasmic domains form, in the centre, a funnel-like structure and a connected narrow (or closed) pore. The pore is opened to the periplasm through three vestibules located at subunit interfaces. These vestibules were proposed to allow direct access of drugs from the periplasm as well as the outer leaflet of the cytoplasmic membrane. The three transmembrane domains of AcrB protomers form a large, 30A-wide central cavity that spans the cytoplasmic membrane and extends to the cytoplasm X-ray crystallographic structures of the trimeric AcrB pump from E. coli with four structurally diverse ligands demonstrated that three molecules of ligand bind simultaneously to the extremely large central cavity of 5000 cubic angstroms, primarily by hydrophobic, aromatic stacking and van der Waals interactions. Each ligand uses a slightly different subset of AcrB residues for binding. The bound ligand molecules often interact with each other, stabilising the binding. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2V50_B 1T9U_A 2HRT_B 3NOC_A 3NOG_A 4DX7_A 1OYD_A 3AOB_A 1T9V_A 4DX6_B ....
Probab=22.44 E-value=1.5e+02 Score=33.64 Aligned_cols=89 Identities=13% Similarity=0.120 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHh---------------cCCCCcccHHHHHHHHHcccCccceeeeEEEEeeCCeE
Q 016028 293 LSCTLIFAAFALSTTVPMLKTIFVILM---------------ERTPSEINVARLQRDLECIKGVQTIHDLHVWAITVGKL 357 (396)
Q Consensus 293 ~i~siii~~~i~~~~~~~~~~~~~~Ll---------------~~sp~~~~~~~i~~~l~~~~~V~~v~~l~~~~~~~~~~ 357 (396)
|+..+++.+.++..|+-.+..--..++ |.+|.+.+.+-.+..=+.+.++.++++++.....|
T Consensus 9 ~~~~~~l~~~~~~~G~~~~~~l~~~~~P~~~~p~i~V~~~~pgas~~~ve~~vt~plE~~l~~v~gv~~i~S~s~~g--- 85 (1021)
T PF00873_consen 9 PVAVLLLFLALILFGIFSFFSLPVELFPDIDFPQISVTTSYPGASPEEVEQLVTKPLEEALSSVEGVKEIRSTSREG--- 85 (1021)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSBESSSS-SSSEEEEEEE-TTS-HHHHHHHTHHHHHHTHCSSTTEEEEEEEETTS---
T ss_pred hHHHHHHHHHHHHHHHHHhhcCChhhCCCCCccceEEEEecCcCCHHHHHHHHHHHHHHHHcCCCCeEEEEEEecCC---
Q ss_pred EEEEEEEeCCCCCHHHHHHHHHHHHHh
Q 016028 358 VLSCHVIAEPAVSSSEILDKIRDYCQK 384 (396)
Q Consensus 358 ~v~v~I~v~~~~~~~~i~~~i~~~l~~ 384 (396)
...+.++++.+.+.++..+++++++.+
T Consensus 86 ~s~i~v~f~~~~d~~~a~~~v~~~i~~ 112 (1021)
T PF00873_consen 86 SSSITVEFDDGTDIDEALQEVREKIDQ 112 (1021)
T ss_dssp EEEEEEEESTTS-HHHHHHHHHHHHHH
T ss_pred cEEEEEEeccccCHHHHHHHHHHHHHh
No 90
>PRK00341 hypothetical protein; Provisional
Probab=22.09 E-value=3.7e+02 Score=20.91 Aligned_cols=59 Identities=17% Similarity=0.129 Sum_probs=35.0
Q ss_pred ccHHHHHHHHHcccCccceeeeEEEEeeCCeEE-EEEEEEeCCCCCHHHHHHHHHHHHHhhCCCc
Q 016028 326 INVARLQRDLECIKGVQTIHDLHVWAITVGKLV-LSCHVIAEPAVSSSEILDKIRDYCQKTHRIY 389 (396)
Q Consensus 326 ~~~~~i~~~l~~~~~V~~v~~l~~~~~~~~~~~-v~v~I~v~~~~~~~~i~~~i~~~l~~~~~v~ 389 (396)
...+.|.+.+++... .+...+..+.-..|+|. +++.|.+... +-++.+-+.|.+...|.
T Consensus 29 ~~~~~V~~iv~~~~~-~~~~~~~~k~Ss~GkY~S~tv~i~~~s~----~q~~~iy~~L~~~~~V~ 88 (91)
T PRK00341 29 GFKDLVIEILQKHAD-VDLSTLAERQSSNGKYTTVQLHIVATDE----DQLQDINSALRATGRVH 88 (91)
T ss_pred hHHHHHHHHHHHhCC-CcccceeeccCCCCEEEEEEEEEEECCH----HHHHHHHHHHhhCCCEE
Confidence 445777777765432 23445555665667765 7777776533 33466667776555553
No 91
>PRK10568 periplasmic protein; Provisional
Probab=21.94 E-value=1.8e+02 Score=26.27 Aligned_cols=34 Identities=26% Similarity=0.365 Sum_probs=27.8
Q ss_pred HHHhcCCCCcccHHHHHHHHHcccCccceee-eEE
Q 016028 316 VILMERTPSEINVARLQRDLECIKGVQTIHD-LHV 349 (396)
Q Consensus 316 ~~Ll~~sp~~~~~~~i~~~l~~~~~V~~v~~-l~~ 349 (396)
-.|+|..+++.+.++..+.+.+++||.+|.+ +++
T Consensus 89 V~L~G~V~s~~~~~~a~~ia~~v~GV~~V~n~l~v 123 (203)
T PRK10568 89 VTLSGFVESQAQAEEAVKVAKGVEGVTSVSDKLHV 123 (203)
T ss_pred EEEEEEeCCHHHHHHHHHHHHhCCCceEEEeeEEe
Confidence 3467888888889999999999999999875 443
No 92
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=21.82 E-value=5.4e+02 Score=26.70 Aligned_cols=23 Identities=17% Similarity=0.094 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCC
Q 016028 108 AHLLTDIAGFSISLFAVWASGWN 130 (396)
Q Consensus 108 ~hsl~D~~s~~i~l~a~~~s~k~ 130 (396)
+.....+++...++.+..+..|.
T Consensus 310 an~~~g~v~~~~t~~~~~lid~~ 332 (485)
T KOG0569|consen 310 ANLGIGIVNLLSTLVSPFLIDRL 332 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 44455566666666666666663
No 93
>PF07787 DUF1625: Protein of unknown function (DUF1625); InterPro: IPR012430 Sequences making up this family are derived from hypothetical proteins expressed by both prokaryotic and eukaryotic species. The region in question is approximately 250 residues long.
Probab=21.35 E-value=4e+02 Score=24.67 Aligned_cols=31 Identities=13% Similarity=-0.004 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 016028 142 FEILGALVSVQLIWLISGILVYEAVDRIVHK 172 (396)
Q Consensus 142 ~E~l~~li~~~~l~~~~~~l~~esi~~li~~ 172 (396)
..+-..-+.|++++++++.++..-+..+++-
T Consensus 181 ~~tW~lR~~G~llmf~G~~~~~~~l~~l~~~ 211 (248)
T PF07787_consen 181 TLTWILRFIGWLLMFIGFFLLFSPLYTLVDW 211 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344555677788888888877777777654
No 94
>COG4331 Predicted membrane protein [Function unknown]
Probab=21.32 E-value=4.3e+02 Score=22.64 Aligned_cols=47 Identities=11% Similarity=0.173 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHhheecChHHHHHhhHHHHHHHHHHHHHHHHHHHhc
Q 016028 79 CLIIFSLIAMVVEVVGGFKANSLAVMTDAAHLLTDIAGFSISLFAVWASG 128 (396)
Q Consensus 79 ~~l~~n~~~~v~~l~~g~~s~S~aL~aDa~hsl~D~~s~~i~l~a~~~s~ 128 (396)
.++++...|.+.|+.--..+||..|+. -+.+|++...+.+.-.|.-+
T Consensus 111 lsi~vl~lFI~YQlyr~~~t~Si~liv---lti~Dv~viiLtllEYR~lk 157 (167)
T COG4331 111 LSILVLVLFILYQLYRFFNTGSISLIV---LTIFDVFVIILTLLEYRLLK 157 (167)
T ss_pred HHHHHHHHHHHHHHHHHHhcccHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 456666777788999999999999984 67889999999998888655
No 95
>PRK05812 secD preprotein translocase subunit SecD; Reviewed
Probab=20.94 E-value=7.4e+02 Score=25.79 Aligned_cols=29 Identities=7% Similarity=-0.055 Sum_probs=17.1
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHhc
Q 016028 100 SLAVMTDAAHLLTDIAGFSISLFAVWASG 128 (396)
Q Consensus 100 S~aL~aDa~hsl~D~~s~~i~l~a~~~s~ 128 (396)
+.++=.|+++...-++..++.+..+.+.-
T Consensus 324 gpslG~~~i~~~~~A~lig~ilV~i~m~~ 352 (498)
T PRK05812 324 GPSLGADSIRAGLIAGLIGLALVLLFMIL 352 (498)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666665555543
No 96
>COG2215 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=20.93 E-value=7.7e+02 Score=23.85 Aligned_cols=16 Identities=25% Similarity=0.133 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 016028 144 ILGALVSVQLIWLISG 159 (396)
Q Consensus 144 ~l~~li~~~~l~~~~~ 159 (396)
.+.++.++++...+++
T Consensus 94 ilLsf~~sllqG~~Av 109 (303)
T COG2215 94 ILLSFLASLLQGLTAV 109 (303)
T ss_pred HHHHHHHHHHHHhHHH
Confidence 3445555555533333
No 97
>KOG3491 consensus Predicted membrane protein [Function unknown]
Probab=20.82 E-value=2e+02 Score=20.54 Aligned_cols=33 Identities=9% Similarity=0.307 Sum_probs=19.9
Q ss_pred cCCCCCCCCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016028 128 GWNATSQYSFGFNRFEILGALVSVQLIWLISGILVYEAVDR 168 (396)
Q Consensus 128 ~k~~~~~~pfG~~R~E~l~~li~~~~l~~~~~~l~~esi~~ 168 (396)
.+++.++||.|- .+.++|++.++...+.+-|+.
T Consensus 28 ~~~~e~kypvgP--------wLlglFvFVVcGSa~FqIIr~ 60 (65)
T KOG3491|consen 28 TTKKEKKYPVGP--------WLLGLFVFVVCGSALFQIIRT 60 (65)
T ss_pred ccCccccCCcch--------HHHHHHHHHhhcHHHHHHHHH
Confidence 456778999874 344555666665555554443
No 98
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=20.80 E-value=9e+02 Score=24.59 Aligned_cols=50 Identities=8% Similarity=-0.110 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCcCcchHHHHHHHHHHHHHHHHHHHH
Q 016028 112 TDIAGFSISLFAVWASGWNATSQYSFGFNRFEILGALVSVQLIWLISGIL 161 (396)
Q Consensus 112 ~D~~s~~i~l~a~~~s~k~~~~~~pfG~~R~E~l~~li~~~~l~~~~~~l 161 (396)
.++.++..+...-.++...-+.+.-+-.-.-|...+++.|+++.+++...
T Consensus 327 Gn~G~qs~~~~~r~l~~g~i~~~~~~~~~~~e~~v~~~~g~~~g~~~~~~ 376 (449)
T TIGR00400 327 GNAGSQSSAVVIRGLALETVKVKDFFKVILREICVSILVGAILASVNFLR 376 (449)
T ss_pred CcHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444332322212333458888988887777666654
No 99
>PF04865 Baseplate_J: Baseplate J-like protein; InterPro: IPR006949 The temperate bacteriophage P2 has four defined tail genes: V, J, W and I. Their order is the late gene promoter, VWJI, followed by the tail fibre genes H and G and then a transcription terminator. BAP V protein is the small spike at the tip of the tail and basal plate assembly protein J lies at the edge of the baseplate []. This family also includes a number of bacterial homologues, which are thought to have been horizontally transferred.
Probab=20.70 E-value=3.5e+02 Score=24.70 Aligned_cols=61 Identities=18% Similarity=0.173 Sum_probs=34.0
Q ss_pred CCCCcccHHHHHHHH--HcccCccceeeeEEEEeeCCeEEEEEEEEeCCCCCH-HHHHHHHHHHHH
Q 016028 321 RTPSEINVARLQRDL--ECIKGVQTIHDLHVWAITVGKLVLSCHVIAEPAVSS-SEILDKIRDYCQ 383 (396)
Q Consensus 321 ~sp~~~~~~~i~~~l--~~~~~V~~v~~l~~~~~~~~~~~v~v~I~v~~~~~~-~~i~~~i~~~l~ 383 (396)
..|++...+++++.+ .....+. +++.+.....-.+.+++.+.+.++.+. ..+.+.+++.|+
T Consensus 159 g~~~~~l~~~V~~~i~~~~~~p~~--~~v~v~~~~~~~v~v~~~l~~~~~~~~~~~~~~~i~~al~ 222 (243)
T PF04865_consen 159 GAPSQELLAAVQAYINAEDVRPLG--DRVTVKAPTYVPVDVTATLTVYPGYDTAEVIQAAIKAALR 222 (243)
T ss_pred CCCCHHHHHHHHHHhhhhccCCCc--eEEEEECCEEEEEEEEEEEEECCCCChHHHHHHHHHHHHH
Confidence 367778888899888 4432221 356665433323456777677766663 322224444443
No 100
>PF03147 FDX-ACB: Ferredoxin-fold anticodon binding domain; InterPro: IPR005121 Aminoacyl-tRNA synthetases (aaRSs) play a crucial role in the translation of the genetic code by means of covalent attachment of amino acids to their cognate tRNAs. Phenylalanine-tRNA synthetase (PheRS) is known to be among the most complex enzymes of the aaRS family. Bacterial and mitochondrial PheRSs share a ferredoxin-fold anticodon binding (FDX-ACB) domain, which represents a canonical double split alpha+beta motif having no insertions. The FDX-ACB domain displays a typical RNA recognition fold (RRM) (see PDOC00030 from PROSITEDOC) formed by the four-stranded antiparallel beta sheet, with two helices packed against it [, , , , ].; GO: 0000049 tRNA binding, 0000287 magnesium ion binding, 0004826 phenylalanine-tRNA ligase activity, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation, 0008033 tRNA processing; PDB: 1JJC_B 1EIY_B 1PYS_B 3HFZ_B 3TEH_B 3PCO_D 2RHS_D 2RHQ_B 2AKW_B 1B70_B ....
Probab=20.65 E-value=4e+02 Score=20.47 Aligned_cols=64 Identities=17% Similarity=0.207 Sum_probs=40.2
Q ss_pred cccHHHHHHHHHcc--cCccceeeeEEEEee---CCeEEEEEEEEeCCCC-C-----HHHHHHHHHHHHHhhCCC
Q 016028 325 EINVARLQRDLECI--KGVQTIHDLHVWAIT---VGKLVLSCHVIAEPAV-S-----SSEILDKIRDYCQKTHRI 388 (396)
Q Consensus 325 ~~~~~~i~~~l~~~--~~V~~v~~l~~~~~~---~~~~~v~v~I~v~~~~-~-----~~~i~~~i~~~l~~~~~v 388 (396)
+...+.+.+.+.+. +-+.++.=+-+|.-. .|+.-+...+.+.+.. + ++++.+++.+.|++++|+
T Consensus 17 ~~~~~~i~~~i~~~~~~~l~~v~l~D~y~~~~l~~g~kS~~~rl~~~~~~~TLt~~ev~~~~~~i~~~l~~~~~~ 91 (94)
T PF03147_consen 17 DVPFADIEEVIRSAGGPLLESVELFDVYRGEKLPEGKKSLTYRLTYQSPDRTLTDEEVNEIHDKIIKALEKKLGA 91 (94)
T ss_dssp TS-HHHHHHHHHHHHTTTEEEEEEEEEEESTTSGTTEEEEEEEEEE--SSS---HHHHHHHHHHHHHHHHHTCT-
T ss_pred CCCHHHHHHHHHHhCccceeEEEEEEEEcCCCCCCCcEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHhCc
Confidence 34456677777664 347778878888632 2566677777776532 2 357888888888888875
No 101
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=20.43 E-value=4e+02 Score=20.39 Aligned_cols=61 Identities=15% Similarity=0.155 Sum_probs=34.0
Q ss_pred CCCcccHHHHHHHHHcccCccceeeeEEEEeeCCe----EEEEEEEEeCCCCCHHHHHHHHHHHHHhhCCCceeEE
Q 016028 322 TPSEINVARLQRDLECIKGVQTIHDLHVWAITVGK----LVLSCHVIAEPAVSSSEILDKIRDYCQKTHRIYHVTV 393 (396)
Q Consensus 322 sp~~~~~~~i~~~l~~~~~V~~v~~l~~~~~~~~~----~~v~v~I~v~~~~~~~~i~~~i~~~l~~~~~v~~vtV 393 (396)
-+.++..+++.+..+. .| +++-++.+.. -.+++++.++++-+.+- +...|+|.|++.+|-|
T Consensus 11 r~~pe~leRVLrvtrh-RG------F~vcamnmt~~~da~~~nie~tV~s~R~~~l----L~~QLeKl~Dv~~V~i 75 (86)
T COG3978 11 RFNPETLERVLRVTRH-RG------FRVCAMNMTAAVDAGNANIELTVDSDRSVDL----LTSQLEKLYDVAHVEI 75 (86)
T ss_pred cCChHHHHHHHHHhhh-cC------eEEEEeecccccccccceEEEEEcCCCChHH----HHHHHHHHccceeEEE
Confidence 3555666666666644 22 2222222111 13566778887766544 4566778888877654
No 102
>KOG2877 consensus sn-1,2-diacylglycerol ethanolamine- and cholinephosphotranferases [Lipid transport and metabolism]
Probab=20.26 E-value=8.1e+02 Score=24.60 Aligned_cols=30 Identities=17% Similarity=0.079 Sum_probs=20.2
Q ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHHH
Q 016028 250 ETKMLNINLQGAYLHVMADLIQSAGVMIAG 279 (396)
Q Consensus 250 ~~~~~s~~l~a~~~~~~~D~l~s~~vlva~ 279 (396)
++|+++..=.+.-.||=.|.++.+.+.++.
T Consensus 108 ARRTnsSsPLGELFDHG~DS~stvf~~l~~ 137 (389)
T KOG2877|consen 108 ARRTNSSSPLGELFDHGCDSISTVFVTLAV 137 (389)
T ss_pred hccCCCCCCcHhhhcccchhHHHHHHHHHH
Confidence 455565555677778888888777655553
No 103
>PF02790 COX2_TM: Cytochrome C oxidase subunit II, transmembrane domain This family corresponds to chains b and o.; InterPro: IPR011759 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The enzyme complex consists of 3-4 subunits (prokaryotes) to up to 13 polypeptides (mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A) (see IPR001505 from INTERPRO), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c. The N-terminal domain of cytochrome C oxidase contains two transmembrane alpha-helices. ; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0009055 electron carrier activity, 0022900 electron transport chain, 0016021 integral to membrane; PDB: 3VRJ_C 2EIN_B 3AG3_B 2DYR_O 3AG1_B 2EIK_O 3ASN_B 1OCR_B 2EIJ_B 1OCC_O ....
Probab=20.09 E-value=3.7e+02 Score=19.86 Aligned_cols=33 Identities=9% Similarity=0.136 Sum_probs=22.4
Q ss_pred CCCCCCCCcCcchHHHHHHHHHHHHHHHHHHHH
Q 016028 129 WNATSQYSFGFNRFEILGALVSVQLIWLISGIL 161 (396)
Q Consensus 129 k~~~~~~pfG~~R~E~l~~li~~~~l~~~~~~l 161 (396)
++...++..+..++|.+...+=.++++++++--
T Consensus 49 ~~~~~~~~~~~~~lE~~WTiiP~iiLl~l~~pS 81 (84)
T PF02790_consen 49 SKFPNKFFNHNNKLEIIWTIIPAIILLFLAFPS 81 (84)
T ss_dssp SSSS--S---SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccchhhhhhhhHHHHHHHHHHHhhh
Confidence 356677888899999999999888888877653
Done!