Query 016029
Match_columns 396
No_of_seqs 124 out of 743
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 03:08:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016029.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016029hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00939 2a57 Equilibrative N 100.0 9E-78 1.9E-82 605.8 33.2 385 4-392 1-433 (437)
2 KOG1479 Nucleoside transporter 100.0 6.8E-78 1.5E-82 586.7 27.4 374 1-394 20-406 (406)
3 PF01733 Nucleoside_tran: Nucl 100.0 1.7E-61 3.7E-66 469.1 -0.8 287 100-391 1-308 (309)
4 PF02487 CLN3: CLN3 protein; 99.9 2.2E-26 4.7E-31 227.2 19.7 361 1-390 2-394 (402)
5 KOG3880 Predicted small molecu 99.8 2.2E-20 4.9E-25 174.5 7.9 356 1-389 14-400 (409)
6 TIGR00881 2A0104 phosphoglycer 98.7 7.5E-07 1.6E-11 86.9 18.0 122 13-144 9-136 (379)
7 TIGR00893 2A0114 d-galactonate 98.7 2.8E-06 6.1E-11 83.0 21.0 123 15-147 10-138 (399)
8 TIGR00895 2A0115 benzoate tran 98.5 8.3E-06 1.8E-10 80.2 18.5 107 278-387 288-394 (398)
9 PF07690 MFS_1: Major Facilita 98.4 9E-06 2E-10 78.7 15.5 330 11-383 8-351 (352)
10 TIGR00891 2A0112 putative sial 98.3 0.00033 7E-09 69.2 24.9 99 40-148 54-157 (405)
11 TIGR00900 2A0121 H+ Antiporter 98.3 0.00011 2.3E-09 71.3 20.7 334 11-387 11-357 (365)
12 KOG4255 Uncharacterized conser 98.3 1.6E-05 3.6E-10 75.8 13.3 185 6-192 18-215 (439)
13 TIGR00890 2A0111 Oxalate/Forma 98.2 0.00016 3.5E-09 70.4 19.8 110 277-387 242-351 (377)
14 TIGR00898 2A0119 cation transp 98.1 0.00043 9.3E-09 71.3 21.1 103 281-387 361-466 (505)
15 TIGR00710 efflux_Bcr_CflA drug 98.1 0.00047 1E-08 67.8 20.6 105 13-127 19-125 (385)
16 TIGR00883 2A0106 metabolite-pr 98.1 0.00026 5.6E-09 69.4 18.5 98 49-148 51-153 (394)
17 PRK11663 regulatory protein Uh 98.1 0.0011 2.3E-08 67.3 22.9 97 41-147 66-167 (434)
18 TIGR00892 2A0113 monocarboxyla 98.1 0.0002 4.4E-09 73.2 17.6 110 278-387 279-389 (455)
19 PRK08633 2-acyl-glycerophospho 98.1 0.00046 1E-08 78.3 22.0 101 41-148 55-160 (1146)
20 TIGR00885 fucP L-fucose:H+ sym 98.0 0.00035 7.5E-09 70.6 18.4 134 3-147 11-150 (410)
21 COG2814 AraJ Arabinose efflux 98.0 0.0021 4.6E-08 64.1 23.1 295 42-391 57-359 (394)
22 PRK11551 putative 3-hydroxyphe 98.0 0.00096 2.1E-08 66.5 20.3 107 278-387 258-364 (406)
23 TIGR00879 SP MFS transporter, 98.0 0.0021 4.6E-08 64.5 22.5 101 40-147 78-183 (481)
24 PRK10489 enterobactin exporter 97.9 0.0013 2.9E-08 66.0 20.7 106 279-387 263-368 (417)
25 TIGR00886 2A0108 nitrite extru 97.9 0.0017 3.6E-08 63.5 20.5 106 13-128 15-123 (366)
26 cd06174 MFS The Major Facilita 97.9 0.0018 3.9E-08 62.1 20.2 304 11-390 11-324 (352)
27 PRK03545 putative arabinose tr 97.9 0.0033 7.1E-08 62.5 21.8 96 42-147 53-153 (390)
28 PRK10213 nepI ribonucleoside t 97.8 0.0033 7.2E-08 62.9 21.1 107 278-388 255-361 (394)
29 PRK11273 glpT sn-glycerol-3-ph 97.8 0.0055 1.2E-07 62.4 22.9 94 42-141 72-170 (452)
30 TIGR00711 efflux_EmrB drug res 97.8 0.0034 7.3E-08 64.0 21.2 110 278-389 294-406 (485)
31 PRK10642 proline/glycine betai 97.8 0.0054 1.2E-07 63.3 22.3 97 49-147 73-174 (490)
32 PRK12382 putative transporter; 97.7 0.0058 1.3E-07 60.7 21.4 106 281-389 255-360 (392)
33 PRK03699 putative transporter; 97.7 0.0032 6.9E-08 62.8 19.6 104 279-386 245-348 (394)
34 TIGR00887 2A0109 phosphate:H+ 97.7 0.012 2.5E-07 60.9 23.5 107 38-148 61-172 (502)
35 TIGR00899 2A0120 sugar efflux 97.6 0.01 2.2E-07 58.0 21.1 58 330-388 287-344 (375)
36 TIGR00792 gph sugar (Glycoside 97.6 0.038 8.2E-07 55.5 25.0 109 280-390 262-377 (437)
37 PRK05122 major facilitator sup 97.6 0.011 2.3E-07 58.8 20.7 88 39-128 57-145 (399)
38 PRK09556 uhpT sugar phosphate 97.5 0.0039 8.4E-08 63.8 17.2 104 39-147 70-178 (467)
39 TIGR02332 HpaX 4-hydroxyphenyl 97.5 0.005 1.1E-07 62.0 17.5 97 42-148 52-153 (412)
40 PRK14995 methyl viologen resis 97.5 0.018 4E-07 59.4 21.9 61 329-389 349-409 (495)
41 PRK10133 L-fucose transporter; 97.5 0.011 2.3E-07 60.3 19.6 101 40-147 68-173 (438)
42 PRK15402 multidrug efflux syst 97.5 0.014 3.1E-07 58.2 20.1 105 282-387 258-364 (406)
43 PRK11102 bicyclomycin/multidru 97.5 0.014 3.1E-07 57.3 19.7 95 42-146 35-134 (377)
44 TIGR00712 glpT glycerol-3-phos 97.5 0.0073 1.6E-07 61.2 17.8 98 42-145 70-172 (438)
45 PRK06814 acylglycerophosphoeth 97.5 0.013 2.9E-07 66.7 21.7 307 41-390 60-393 (1140)
46 PRK11902 ampG muropeptide tran 97.4 0.028 6.1E-07 56.2 21.4 135 4-148 4-151 (402)
47 PRK10504 putative transporter; 97.4 0.018 3.9E-07 58.7 20.2 53 336-388 358-410 (471)
48 PRK11652 emrD multidrug resist 97.4 0.022 4.8E-07 56.5 20.2 57 330-387 298-354 (394)
49 PLN00028 nitrate transmembrane 97.4 0.018 3.8E-07 59.3 20.0 77 42-128 80-156 (476)
50 PRK09874 drug efflux system pr 97.4 0.026 5.5E-07 56.1 20.1 108 279-389 262-369 (408)
51 PF05977 MFS_3: Transmembrane 97.3 0.034 7.3E-07 58.1 21.2 85 40-129 52-137 (524)
52 TIGR00896 CynX cyanate transpo 97.3 0.03 6.5E-07 54.7 19.3 115 21-146 22-141 (355)
53 TIGR00894 2A0114euk Na(+)-depe 97.3 0.03 6.6E-07 57.0 19.9 97 42-146 85-186 (465)
54 PRK11043 putative transporter; 97.3 0.051 1.1E-06 54.0 21.1 109 10-128 17-127 (401)
55 TIGR00901 2A0125 AmpG-related 97.3 0.016 3.4E-07 56.7 17.1 67 305-371 275-349 (356)
56 PRK10077 xylE D-xylose transpo 97.3 0.027 5.9E-07 57.3 19.2 107 40-146 62-175 (479)
57 TIGR01299 synapt_SV2 synaptic 97.2 0.058 1.3E-06 58.7 21.8 146 37-193 206-360 (742)
58 PRK10473 multidrug efflux syst 97.2 0.053 1.2E-06 53.7 20.0 107 12-128 16-124 (392)
59 PRK12307 putative sialic acid 97.2 0.13 2.9E-06 51.4 22.9 96 40-145 60-160 (426)
60 PRK10091 MFS transport protein 97.2 0.038 8.2E-07 54.8 18.6 116 21-146 25-146 (382)
61 TIGR00902 2A0127 phenyl propri 97.1 0.05 1.1E-06 54.0 19.1 99 281-387 246-349 (382)
62 KOG2504 Monocarboxylate transp 97.1 0.018 3.9E-07 59.9 16.1 103 278-382 336-439 (509)
63 TIGR01272 gluP glucose/galacto 97.1 0.027 5.8E-07 54.6 16.5 88 95-182 9-109 (310)
64 PRK03633 putative MFS family t 97.1 0.097 2.1E-06 51.8 20.5 103 279-388 239-342 (381)
65 COG0738 FucP Fucose permease [ 97.1 0.015 3.2E-07 57.9 14.0 87 52-145 67-158 (422)
66 COG2271 UhpC Sugar phosphate p 96.9 0.04 8.7E-07 55.2 15.7 295 49-387 80-399 (448)
67 PRK11128 putative 3-phenylprop 96.8 0.06 1.3E-06 53.4 16.7 57 329-386 291-348 (382)
68 PRK15011 sugar efflux transpor 96.8 0.14 3E-06 51.1 19.3 58 331-389 305-362 (393)
69 TIGR00903 2A0129 major facilit 96.8 0.35 7.6E-06 48.0 21.6 156 15-189 7-167 (368)
70 TIGR02718 sider_RhtX_FptX side 96.7 0.18 4E-06 49.9 19.2 27 3-29 5-31 (390)
71 PRK09952 shikimate transporter 96.7 0.2 4.3E-06 50.9 19.7 95 51-147 82-181 (438)
72 KOG2532 Permease of the major 96.6 0.6 1.3E-05 48.1 22.4 88 46-141 86-173 (466)
73 PRK09705 cynX putative cyanate 96.6 0.31 6.7E-06 48.6 19.8 94 42-145 53-150 (393)
74 PRK09669 putative symporter Ya 96.5 0.33 7.1E-06 49.2 20.1 59 333-391 321-386 (444)
75 TIGR00897 2A0118 polyol permea 96.5 0.7 1.5E-05 46.1 22.2 109 280-390 262-373 (402)
76 PRK11646 multidrug resistance 96.5 0.59 1.3E-05 46.7 21.6 56 332-387 298-353 (400)
77 PRK03893 putative sialic acid 96.5 0.59 1.3E-05 47.8 21.7 97 42-148 64-165 (496)
78 TIGR00882 2A0105 oligosacchari 96.4 0.22 4.7E-06 49.5 17.5 56 329-384 305-361 (396)
79 KOG2533 Permease of the major 96.4 0.037 8E-07 57.3 11.8 198 38-256 86-290 (495)
80 PF13347 MFS_2: MFS/sugar tran 96.3 0.37 8E-06 48.6 18.7 65 329-393 313-384 (428)
81 KOG0569 Permease of the major 96.3 0.53 1.1E-05 48.6 19.5 140 42-195 69-212 (485)
82 PRK11010 ampG muropeptide tran 96.2 0.38 8.2E-06 49.7 18.7 137 3-148 16-164 (491)
83 TIGR00924 yjdL_sub1_fam amino 96.2 1.1 2.4E-05 46.1 21.8 66 330-395 380-445 (475)
84 PRK15403 multidrug efflux syst 96.1 1.7 3.6E-05 43.8 22.3 96 42-147 60-160 (413)
85 PRK10054 putative transporter; 96.0 0.43 9.4E-06 47.7 17.2 96 42-147 52-152 (395)
86 PRK09528 lacY galactoside perm 96.0 0.63 1.4E-05 46.6 18.4 58 329-386 313-371 (420)
87 PRK11195 lysophospholipid tran 95.9 2.1 4.6E-05 42.7 21.6 79 36-127 41-120 (393)
88 PRK09848 glucuronide transport 95.5 3.3 7.2E-05 41.9 23.9 59 332-390 320-385 (448)
89 PRK10406 alpha-ketoglutarate t 95.5 2.4 5.2E-05 42.7 20.5 99 49-149 79-182 (432)
90 PF06609 TRI12: Fungal trichot 95.2 2.8 6.1E-05 44.5 20.4 108 282-390 356-464 (599)
91 TIGR00879 SP MFS transporter, 95.1 0.095 2.1E-06 52.5 8.9 109 276-387 72-183 (481)
92 PRK15075 citrate-proton sympor 95.1 1.2 2.6E-05 45.0 16.8 96 50-147 73-173 (434)
93 TIGR00805 oat sodium-independe 94.8 1.3 2.8E-05 47.5 16.6 127 21-147 55-228 (633)
94 PRK10207 dipeptide/tripeptide 94.7 4 8.7E-05 42.2 19.7 58 330-387 378-435 (489)
95 PRK12382 putative transporter; 94.7 0.13 2.8E-06 51.0 8.4 155 241-396 17-177 (392)
96 cd06174 MFS The Major Facilita 94.5 0.12 2.5E-06 49.4 7.4 112 277-391 36-147 (352)
97 PRK11462 putative transporter; 94.5 6.6 0.00014 40.2 22.2 43 105-147 118-166 (460)
98 KOG3764 Vesicular amine transp 94.3 0.38 8.2E-06 48.1 10.4 77 55-141 128-205 (464)
99 PF13347 MFS_2: MFS/sugar tran 94.2 0.57 1.2E-05 47.2 12.0 106 11-124 237-343 (428)
100 PF03209 PUCC: PUCC protein; 94.2 6.9 0.00015 39.3 20.7 76 278-353 247-323 (403)
101 PRK10429 melibiose:sodium symp 94.1 7.9 0.00017 39.6 24.1 47 100-146 110-162 (473)
102 TIGR00889 2A0110 nucleoside tr 93.9 1.9 4.2E-05 43.4 15.1 107 278-387 254-365 (418)
103 PRK09848 glucuronide transport 93.8 1 2.2E-05 45.6 13.0 69 48-124 279-347 (448)
104 TIGR00895 2A0115 benzoate tran 93.5 0.33 7.2E-06 47.4 8.5 109 278-390 55-164 (398)
105 PRK09669 putative symporter Ya 93.4 0.55 1.2E-05 47.6 10.2 75 42-124 273-347 (444)
106 PRK11646 multidrug resistance 93.3 0.22 4.8E-06 49.8 7.0 147 242-391 13-159 (400)
107 TIGR00788 fbt folate/biopterin 93.2 7.2 0.00016 40.0 18.2 60 330-389 349-409 (468)
108 PRK05122 major facilitator sup 93.1 0.27 5.8E-06 48.8 7.3 150 241-391 17-172 (399)
109 TIGR00893 2A0114 d-galactonate 92.8 0.33 7.3E-06 47.0 7.4 112 278-392 32-143 (399)
110 PLN00028 nitrate transmembrane 92.7 2.1 4.5E-05 44.0 13.3 31 100-130 352-382 (476)
111 TIGR00900 2A0121 H+ Antiporter 92.7 0.38 8.3E-06 46.3 7.5 115 276-391 35-152 (365)
112 TIGR00880 2_A_01_02 Multidrug 92.6 0.29 6.3E-06 39.7 5.7 62 329-390 49-110 (141)
113 TIGR00710 efflux_Bcr_CflA drug 91.8 1.1 2.5E-05 43.6 9.8 110 278-390 43-152 (385)
114 PRK10213 nepI ribonucleoside t 91.6 0.76 1.7E-05 45.8 8.4 107 281-391 61-168 (394)
115 TIGR00898 2A0119 cation transp 91.6 0.96 2.1E-05 46.4 9.3 113 274-389 126-238 (505)
116 TIGR00806 rfc RFC reduced fola 91.5 19 0.00042 37.3 20.9 131 47-196 76-211 (511)
117 KOG2325 Predicted transporter/ 91.4 1.9 4E-05 44.5 10.9 102 49-155 87-193 (488)
118 PF03825 Nuc_H_symport: Nucleo 91.4 15 0.00031 37.1 17.3 50 338-387 308-358 (400)
119 PRK10429 melibiose:sodium symp 91.4 2.6 5.6E-05 43.2 12.2 76 44-124 277-352 (473)
120 PF07690 MFS_1: Major Facilita 90.8 0.3 6.6E-06 46.8 4.5 109 279-390 36-144 (352)
121 PRK11462 putative transporter; 90.6 1.8 3.9E-05 44.3 10.2 34 38-71 268-301 (460)
122 PRK10504 putative transporter; 90.6 4.3 9.3E-05 41.2 12.9 73 49-128 313-386 (471)
123 TIGR00881 2A0104 phosphoglycer 90.6 0.57 1.2E-05 45.3 6.2 110 278-390 33-143 (379)
124 PRK11663 regulatory protein Uh 90.6 1.5 3.3E-05 44.3 9.5 115 279-396 62-176 (434)
125 PRK09874 drug efflux system pr 90.4 2.1 4.6E-05 42.2 10.2 106 279-388 58-163 (408)
126 TIGR00886 2A0108 nitrite extru 89.8 1.5 3.3E-05 42.5 8.5 107 278-388 40-147 (366)
127 TIGR00891 2A0112 putative sial 89.7 1.5 3.3E-05 42.9 8.4 110 279-391 51-160 (405)
128 PRK09584 tppB putative tripept 89.6 28 0.0006 36.1 22.3 57 330-386 381-437 (500)
129 PRK10489 enterobactin exporter 89.3 0.58 1.3E-05 46.8 5.2 116 275-390 52-169 (417)
130 PRK08633 2-acyl-glycerophospho 89.2 1.2 2.5E-05 50.8 8.2 112 279-391 51-163 (1146)
131 KOG0255 Synaptic vesicle trans 88.7 32 0.00069 35.5 20.0 75 46-130 131-206 (521)
132 PF07672 MFS_Mycoplasma: Mycop 88.5 7.9 0.00017 36.6 11.7 107 274-381 140-253 (267)
133 PRK10054 putative transporter; 88.3 1.7 3.6E-05 43.4 7.8 148 241-391 9-156 (395)
134 KOG0569 Permease of the major 87.7 1.6 3.5E-05 45.1 7.2 113 281-394 66-179 (485)
135 TIGR00792 gph sugar (Glycoside 87.7 10 0.00022 37.7 13.1 73 42-123 266-338 (437)
136 PRK03699 putative transporter; 87.5 3.2 6.9E-05 41.2 9.2 102 280-384 47-148 (394)
137 PRK15034 nitrate/nitrite trans 86.8 41 0.00089 34.7 19.2 73 50-128 87-160 (462)
138 TIGR00894 2A0114euk Na(+)-depe 86.6 3.1 6.6E-05 42.3 8.6 112 279-391 80-191 (465)
139 PF01770 Folate_carrier: Reduc 86.1 38 0.00083 34.3 15.8 87 47-144 55-150 (412)
140 PRK03545 putative arabinose tr 86.0 3.1 6.8E-05 41.1 8.1 74 323-396 89-162 (390)
141 PRK10091 MFS transport protein 85.9 2.9 6.3E-05 41.3 7.8 144 240-387 4-147 (382)
142 TIGR01299 synapt_SV2 synaptic 85.9 1.7 3.7E-05 47.5 6.5 110 279-391 206-315 (742)
143 PRK11273 glpT sn-glycerol-3-ph 85.9 6.6 0.00014 39.8 10.6 102 279-380 67-169 (452)
144 PRK11551 putative 3-hydroxyphe 85.7 2.7 5.8E-05 41.6 7.6 109 278-389 53-161 (406)
145 PF00083 Sugar_tr: Sugar (and 85.7 0.001 2.2E-08 67.4 -17.4 99 42-147 55-158 (451)
146 PRK10473 multidrug efflux syst 85.6 3.3 7.1E-05 40.9 8.0 110 278-390 41-150 (392)
147 PRK11102 bicyclomycin/multidru 85.1 3.7 8.1E-05 40.0 8.1 109 278-390 29-138 (377)
148 PRK06814 acylglycerophosphoeth 85.1 2.6 5.6E-05 48.2 7.9 87 310-396 87-173 (1140)
149 TIGR00711 efflux_EmrB drug res 85.0 2.2 4.8E-05 43.2 6.7 106 281-389 43-148 (485)
150 TIGR00887 2A0109 phosphate:H+ 84.9 3.3 7.1E-05 42.7 8.0 113 278-391 59-175 (502)
151 TIGR00880 2_A_01_02 Multidrug 84.8 18 0.00039 28.7 13.1 94 42-145 7-105 (141)
152 TIGR00892 2A0113 monocarboxyla 83.9 7.7 0.00017 39.5 10.1 33 96-128 333-366 (455)
153 PRK09556 uhpT sugar phosphate 83.3 2.3 5.1E-05 43.3 6.0 63 325-387 116-178 (467)
154 PRK15403 multidrug efflux syst 83.0 4.3 9.3E-05 40.8 7.7 108 280-390 56-163 (413)
155 KOG0252 Inorganic phosphate tr 82.2 15 0.00032 37.8 10.8 145 42-197 93-252 (538)
156 PRK10642 proline/glycine betai 81.5 34 0.00075 35.0 13.9 25 47-71 300-324 (490)
157 KOG0255 Synaptic vesicle trans 80.8 9.7 0.00021 39.3 9.6 114 274-390 117-230 (521)
158 PRK15402 multidrug efflux syst 79.8 13 0.00029 36.7 9.9 105 280-387 53-157 (406)
159 PRK09528 lacY galactoside perm 78.8 53 0.0012 32.6 14.0 76 44-129 273-349 (420)
160 KOG2563 Permease of the major 78.8 7.8 0.00017 39.5 7.6 116 5-128 51-173 (480)
161 TIGR00897 2A0118 polyol permea 78.2 8.6 0.00019 38.2 8.0 109 279-387 52-162 (402)
162 TIGR00712 glpT glycerol-3-phos 77.9 17 0.00036 36.6 10.1 51 335-385 122-172 (438)
163 PRK11652 emrD multidrug resist 77.9 18 0.00039 35.6 10.1 107 279-388 47-153 (394)
164 KOG2325 Predicted transporter/ 77.6 28 0.0006 36.1 11.4 148 239-388 34-190 (488)
165 TIGR02332 HpaX 4-hydroxyphenyl 76.6 10 0.00022 38.0 8.0 66 325-390 90-155 (412)
166 TIGR00885 fucP L-fucose:H+ sym 75.8 10 0.00022 38.1 7.8 63 330-392 93-155 (410)
167 PRK09584 tppB putative tripept 75.3 55 0.0012 33.8 13.2 73 54-127 341-413 (500)
168 COG2211 MelB Na+/melibiose sym 75.3 1.1E+02 0.0023 31.7 24.5 249 105-391 121-394 (467)
169 PF11700 ATG22: Vacuole efflux 75.2 1.1E+02 0.0023 31.7 25.4 102 277-381 319-427 (477)
170 TIGR01301 GPH_sucrose GPH fami 74.1 1.1E+02 0.0025 31.6 21.2 49 99-147 117-172 (477)
171 PRK15034 nitrate/nitrite trans 73.6 24 0.00052 36.4 9.8 58 329-387 126-183 (462)
172 PRK11902 ampG muropeptide tran 73.4 7.6 0.00017 38.5 6.1 56 335-390 98-153 (402)
173 TIGR00901 2A0125 AmpG-related 73.1 18 0.0004 34.9 8.6 55 337-391 89-143 (356)
174 PRK15075 citrate-proton sympor 72.2 32 0.00069 34.5 10.4 56 335-390 121-176 (434)
175 TIGR00902 2A0127 phenyl propri 71.6 1.1E+02 0.0023 30.1 13.9 113 46-177 253-370 (382)
176 TIGR00883 2A0106 metabolite-pr 71.3 26 0.00057 33.7 9.3 55 335-389 100-154 (394)
177 COG2211 MelB Na+/melibiose sym 70.2 61 0.0013 33.4 11.7 100 16-123 253-354 (467)
178 PRK03893 putative sialic acid 69.7 17 0.00037 37.0 7.8 107 280-389 60-166 (496)
179 PRK11043 putative transporter; 69.3 25 0.00053 34.7 8.7 137 248-388 15-151 (401)
180 PTZ00207 hypothetical protein; 68.7 48 0.001 35.3 11.0 127 52-192 80-210 (591)
181 PRK03633 putative MFS family t 68.0 18 0.00038 35.6 7.3 110 276-388 42-151 (381)
182 TIGR00924 yjdL_sub1_fam amino 67.8 22 0.00047 36.5 8.2 107 279-388 52-162 (475)
183 PRK12307 putative sialic acid 67.2 16 0.00036 36.2 7.0 107 278-387 56-162 (426)
184 KOG2533 Permease of the major 67.1 1.2E+02 0.0025 31.7 13.2 64 6-69 280-347 (495)
185 PRK10133 L-fucose transporter; 66.9 22 0.00048 36.0 7.9 59 330-388 116-174 (438)
186 PF06609 TRI12: Fungal trichot 66.7 30 0.00065 36.9 9.0 77 311-388 111-187 (599)
187 PRK14995 methyl viologen resis 66.4 25 0.00055 36.1 8.3 83 314-396 77-160 (495)
188 KOG2615 Permease of the major 65.2 1.6E+02 0.0035 29.8 17.2 54 316-369 337-390 (451)
189 PF05978 UNC-93: Ion channel r 65.1 49 0.0011 28.7 8.6 111 275-393 41-151 (156)
190 PRK11195 lysophospholipid tran 64.8 20 0.00043 35.6 7.0 54 335-388 92-145 (393)
191 KOG0254 Predicted transporter 62.9 63 0.0014 33.4 10.5 108 279-389 93-200 (513)
192 TIGR00890 2A0111 Oxalate/Forma 62.7 11 0.00023 36.2 4.5 104 276-383 39-142 (377)
193 PRK09952 shikimate transporter 62.7 1.7E+02 0.0038 29.3 14.5 76 47-128 300-376 (438)
194 PRK10207 dipeptide/tripeptide 61.3 2E+02 0.0044 29.6 15.1 69 61-129 344-413 (489)
195 TIGR00806 rfc RFC reduced fola 61.0 33 0.00072 35.6 7.7 110 278-396 69-178 (511)
196 TIGR01301 GPH_sucrose GPH fami 60.9 1.8E+02 0.004 30.1 13.3 144 40-191 312-475 (477)
197 KOG3762 Predicted transporter 60.9 39 0.00085 35.5 8.2 154 5-184 381-547 (618)
198 TIGR00889 2A0110 nucleoside tr 58.4 1.9E+02 0.0041 28.9 12.9 98 44-147 262-365 (418)
199 PF00083 Sugar_tr: Sugar (and 58.0 1 2.3E-05 45.3 -3.7 113 275-390 46-161 (451)
200 PRK10077 xylE D-xylose transpo 57.3 2.1E+02 0.0046 28.6 16.3 40 42-81 315-354 (479)
201 TIGR00899 2A0120 sugar efflux 57.1 37 0.0008 32.7 7.3 35 357-391 113-149 (375)
202 TIGR00903 2A0129 major facilit 55.3 46 0.001 32.8 7.7 66 330-396 78-143 (368)
203 PF06813 Nodulin-like: Nodulin 55.0 88 0.0019 29.4 9.0 125 51-184 54-179 (250)
204 PF05977 MFS_3: Transmembrane 54.3 20 0.00043 37.5 5.1 80 304-383 74-155 (524)
205 COG2814 AraJ Arabinose efflux 53.0 27 0.00059 35.1 5.5 137 239-383 13-153 (394)
206 COG2223 NarK Nitrate/nitrite t 51.7 1.2E+02 0.0026 30.8 9.7 72 55-129 276-347 (417)
207 COG2271 UhpC Sugar phosphate p 50.8 2E+02 0.0043 29.4 11.1 96 42-145 297-393 (448)
208 PRK11010 ampG muropeptide tran 49.9 37 0.00081 34.9 6.2 60 332-391 108-167 (491)
209 PF03092 BT1: BT1 family; Int 49.3 3E+02 0.0064 27.9 16.7 41 108-148 102-145 (433)
210 PRK09705 cynX putative cyanate 47.2 72 0.0016 31.5 7.6 105 280-388 49-153 (393)
211 PRK11404 putative PTS system 45.3 62 0.0014 33.5 6.9 46 104-152 379-425 (482)
212 TIGR00805 oat sodium-independe 45.0 53 0.0011 35.3 6.6 55 336-390 177-231 (633)
213 KOG3098 Uncharacterized conser 44.3 3.8E+02 0.0082 27.7 18.9 86 49-145 66-155 (461)
214 TIGR00788 fbt folate/biopterin 44.3 52 0.0011 33.7 6.2 104 44-147 299-407 (468)
215 KOG2504 Monocarboxylate transp 44.3 1E+02 0.0022 32.2 8.4 95 42-144 342-441 (509)
216 PRK10478 putative PTS system f 44.1 33 0.00072 34.0 4.5 47 103-152 252-299 (359)
217 PF02535 Zip: ZIP Zinc transpo 44.1 2.9E+02 0.0062 26.2 12.9 107 274-382 200-312 (317)
218 KOG2532 Permease of the major 43.5 1.6E+02 0.0035 30.3 9.6 72 110-184 372-444 (466)
219 PRK11128 putative 3-phenylprop 42.4 3.3E+02 0.0072 26.5 13.0 71 49-129 256-326 (382)
220 PF01306 LacY_symp: LacY proto 42.2 2.6E+02 0.0056 28.4 10.6 128 46-189 272-402 (412)
221 PF03547 Mem_trans: Membrane t 41.8 3.5E+02 0.0076 26.5 15.2 42 281-326 285-326 (385)
222 PF07857 DUF1632: CEO family ( 41.4 70 0.0015 30.2 6.0 48 134-181 79-132 (254)
223 KOG0254 Predicted transporter 41.0 4.2E+02 0.0091 27.2 12.5 83 36-128 92-174 (513)
224 TIGR01272 gluP glucose/galacto 39.8 2.8E+02 0.0061 26.5 10.3 92 42-144 187-281 (310)
225 TIGR00896 CynX cyanate transpo 39.7 1.3E+02 0.0028 28.9 8.0 59 328-387 84-142 (355)
226 PF03209 PUCC: PUCC protein; 37.8 4.5E+02 0.0097 26.6 12.8 84 98-184 303-395 (403)
227 KOG1330 Sugar transporter/spin 37.8 2E+02 0.0044 29.7 9.0 80 38-127 73-153 (493)
228 PF11700 ATG22: Vacuole efflux 35.7 5.1E+02 0.011 26.7 12.1 102 39-145 323-430 (477)
229 PF13038 DUF3899: Domain of un 34.1 2.2E+02 0.0047 21.9 7.1 18 167-184 4-21 (92)
230 PRK10406 alpha-ketoglutarate t 33.6 1.6E+02 0.0035 29.3 7.8 55 334-388 127-181 (432)
231 PF11368 DUF3169: Protein of u 32.6 4.1E+02 0.0089 24.6 10.3 23 128-150 11-33 (248)
232 KOG2816 Predicted transporter 32.0 1.4E+02 0.0029 30.9 6.9 58 332-392 114-173 (463)
233 PF01306 LacY_symp: LacY proto 31.3 2.1E+02 0.0047 29.0 8.1 41 323-363 304-344 (412)
234 KOG2881 Predicted membrane pro 31.3 4.7E+02 0.01 24.9 9.7 22 277-298 246-267 (294)
235 COG0738 FucP Fucose permease [ 29.2 1.7E+02 0.0036 29.7 6.7 96 40-147 279-378 (422)
236 KOG3098 Uncharacterized conser 29.0 2.5E+02 0.0053 29.0 8.1 104 277-388 56-159 (461)
237 PF04145 Ctr: Ctr copper trans 27.3 1.1E+02 0.0025 25.4 4.6 18 240-257 104-121 (144)
238 COG2223 NarK Nitrate/nitrite t 27.1 6.8E+02 0.015 25.5 14.5 76 51-133 67-142 (417)
239 PF05968 Bacillus_PapR: Bacill 25.0 64 0.0014 21.7 2.0 19 365-383 3-21 (48)
240 PF05978 UNC-93: Ion channel r 24.9 4.5E+02 0.0097 22.6 9.7 95 7-113 1-106 (156)
241 KOG2615 Permease of the major 23.7 72 0.0016 32.2 3.0 78 305-386 97-175 (451)
242 PF03825 Nuc_H_symport: Nucleo 23.3 7.6E+02 0.016 24.7 11.9 135 45-189 255-396 (400)
243 PF06813 Nodulin-like: Nodulin 22.9 86 0.0019 29.4 3.3 120 255-376 17-140 (250)
244 PRK15011 sugar efflux transpor 22.9 7.1E+02 0.015 24.2 13.7 24 46-69 265-288 (393)
245 KOG1479 Nucleoside transporter 20.6 1.4E+02 0.0029 30.3 4.3 10 337-346 386-395 (406)
246 PF00854 PTR2: POT family; In 20.2 3.7E+02 0.0079 26.3 7.4 76 100-184 37-120 (372)
No 1
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=100.00 E-value=9e-78 Score=605.78 Aligned_cols=385 Identities=24% Similarity=0.429 Sum_probs=320.0
Q ss_pred eeehhhhhhhhhhHhhchHHHHhhhcCCC--C-------------CcceeehhhhHHHHHHHHHHHHhhccCCcchhhHH
Q 016029 4 CWLLGNGCLFSWNSMLTVVDYYVFLFPQY--H-------------PSRILTLVYQPFALITLAILAYHEAKIDTRRRIIF 68 (396)
Q Consensus 4 F~~lGi~~LlpwN~~ita~~Yf~~~~~~~--~-------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~ 68 (396)
|+++|+|+|+|||+|+||.|||++||+++ + +++++++++++++++..+++.+.++|+|.+.|+..
T Consensus 1 f~llG~~~L~pWN~fitA~~Yf~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~i~~~~Ri~~ 80 (437)
T TIGR00939 1 FFMLGVGVLLPWNAFITAPQYFIEYYKYAQNIPEAIPSSSKMWKHFNTYYTLASQLPSLLFNSLNLFLIFRIPVTVRLLG 80 (437)
T ss_pred CEEEeeeccchhHHHhhHHHHHHHHhccCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccchhHH
Confidence 78999999999999999999999998753 1 34556668888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHHHHHhhhhhhhccchhhccccCCHHHHHHHHhhhhhHhHHHHHHHH
Q 016029 69 GYILFFASSLLVLVLDLATSGKGGLGTFIGICVISGAFGVADANVQGGMVGDLSFMTSELIQSFLAGLAASGAITSALRL 148 (396)
Q Consensus 69 ~~~~~~i~~~~~~~i~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la~~~p~~~~~a~~~G~g~aGi~~s~~~i 148 (396)
+++++++..++..++... +.+...+|+++|+++++.|+++|+.|++.+|+++.+|++|+|++|+|||+||++++++|+
T Consensus 81 ~lv~~~~~~~~~~~l~~~--~~~~~~~f~~~~~~v~~~g~~~~~~q~s~~gla~~fp~~~~~a~~~G~g~aGv~~s~~~i 158 (437)
T TIGR00939 81 GLVILLVVVILVMVLVKV--QTSETGFFVTTMASVVIINSGMALLQGSLFGLAGVFPSTYSSAVMSGQGLAGVLTSLAMI 158 (437)
T ss_pred HHHHHHHHHHHHhheeee--cCCcchHHHHHHHHHHHHHhhhhhhcccchhhcccCCHHHHHHHHhcchhHHHHHHHHHH
Confidence 988776665554333211 122346899999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCCccccchhhhHHhHHHHHHHHHHHHHHHHHcCCChHHHHHHHhhhccC--Cccc-----cchh-hhc--cCc
Q 016029 149 ITKAAFENSKDGLRKGALLFFAISSFFEFLCVILYAFVFPKIPIVKYYRNKAASEG--SKTV-----AADL-AAG--GIQ 218 (396)
Q Consensus 149 i~~~~~~~~~~~~~~~a~~yF~ia~~~~~~~~~~~~~~l~k~~~~~~~~~~~~~~~--~~~~-----~~~~-~~~--~~~ 218 (396)
+++++.+|+. ++++++++||+++++++++|+++|. .++|+|++|||.++..+++ +++. ++++ +++ +.+
T Consensus 159 i~~a~~~~~~-~~~~~a~~YF~~a~~v~l~~i~~~~-~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (437)
T TIGR00939 159 LVKASGNDSH-GLKKSALGYFGTPCVVQLICIVCYL-LLPKLPFARYYLQKKLDKGAGEDETKGELRSKAEQNGIPHGGD 236 (437)
T ss_pred HHHHhcCCcc-chhhhhhhHHHHHHHHHHHHHHHHH-HHhcCHHHHHHHHhhcccccccccccccccccccccccccccc
Confidence 9999877755 7899999999999999999999999 9999999999976543210 0000 0000 000 000
Q ss_pred c-C----------cc-cccccccccccHHHHHHHHHHHHHHHHHHhhhhccccCceEeeccCCCC-CCc-hHHHHHHHHH
Q 016029 219 M-L----------SK-EEVEKCSERFSNKQLLLQNIDYAIDMFVIYTLTLSIFPGFLSEDTGSHS-LGG-WYAVVLIAMY 284 (396)
Q Consensus 219 ~-~----------~~-~~~~~~~~~~~~~~v~k~i~~~~~~~~l~f~vTl~vFP~i~~~~~~~~~-~~~-w~~~~~~~~f 284 (396)
+ + +| +++++++++.++++++||+|+++++++++|++||++|||+++++++++. .++ |++++++++|
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~kki~~~~~~vf~~F~vTL~vFPgv~~~i~~~~~~~~~~~~~~i~~~~f 316 (437)
T TIGR00939 237 QPSPTLVLDWEKEPESPDEPQKPLKTSVWVVFTKVWLLAFSVVFVFTVTLSVFPAITTAVTSSGLGLSNWFYPIICFLLF 316 (437)
T ss_pred cccccccccccccccCCccchhcccCcHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEEeeccCCCCCccHHHHHHHHHH
Confidence 0 0 00 1112234467899999999999999999999999999999988766553 345 5899999999
Q ss_pred HHhhhhhhhhccccccccCCcchHHHHHHHHHHHHHHHHhhccc---------CCchHHHHHHHHHhhccccccceeeec
Q 016029 285 NVGDLIGRYIPLLKFFKLESRKYITAATLSRFLLVPAFYFTAKY---------GDQGWMIMLTSFLGLSNGYLTVCVLTA 355 (396)
Q Consensus 285 n~gD~iGR~l~~~~~~~~~~~~~l~i~sl~R~~fiplfll~~~~---------~~d~~~~i~~~lfgltnGyl~t~~mi~ 355 (396)
|+||++||.++.+..++.+++|++++++++|++|||+|++||+. ++|+++++++++||+||||++|++|++
T Consensus 317 NvgD~vGR~~~~~~~~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnGy~~s~~m~~ 396 (437)
T TIGR00939 317 NLFDWLGRSLTSKFMWPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNGYLGSLSMCL 396 (437)
T ss_pred HHHHHHHhhhhheeEeeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhhHHHHHHHHh
Confidence 99999999999877665445558999999999999999999964 589999999999999999999999999
Q ss_pred cCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 016029 356 APKGYKGPEQNALGNLLVLFLLGGIFAGATLDWLWLI 392 (396)
Q Consensus 356 ~p~~v~~~e~e~ag~~~~~~l~~Gl~~Gs~~s~~~~~ 392 (396)
||++++++|||.||.+|++++++|+++||.+|+++..
T Consensus 397 ~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~~~~ 433 (437)
T TIGR00939 397 APRQVDPHEREVAGALMVIFLLVGLALGAVLSFLFVA 433 (437)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998864
No 2
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]
Probab=100.00 E-value=6.8e-78 Score=586.70 Aligned_cols=374 Identities=40% Similarity=0.672 Sum_probs=312.6
Q ss_pred CeeeeehhhhhhhhhhHhhchHHHHhhhcCCCCCcc----eeehhhhHHHHHHHHHHHHhhccCCcchhhHHHHHHHHHH
Q 016029 1 MAVCWLLGNGCLFSWNSMLTVVDYYVFLFPQYHPSR----ILTLVYQPFALITLAILAYHEAKIDTRRRIIFGYILFFAS 76 (396)
Q Consensus 1 Y~~F~~lGi~~LlpwN~~ita~~Yf~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~i~ 76 (396)
|++|+++|+|+|+|||+|+|+.|||.+++|+++... +++.+.++++++.+.++.+...| .+.|+..++.+. .
T Consensus 20 ~~i~~llGiG~LlpWN~fiTa~~y~~~~~~~~~~~~~F~~~~~~~a~i~~ll~~~~n~~~~~~--~~~~~~~~l~~~--~ 95 (406)
T KOG1479|consen 20 YLIFLLLGIGTLLPWNMFITASDYYYYRFPGYHNSKNFTSSYTLAAQIPLLLFNLLNAFLNTR--LRTRVGYLLSLI--A 95 (406)
T ss_pred HHHHHHHhcccccchHhhhccHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH--H
Confidence 678999999999999999999999999999876444 44555555666666667776666 444444343333 3
Q ss_pred HHHHHHhhhcc--CCCCCchHHHHHHHHHHHHhhhhhhhccchhhccccCCHHHHHHHHhhhhhHhHHHHHHHHHHHhhc
Q 016029 77 SLLVLVLDLAT--SGKGGLGTFIGICVISGAFGVADANVQGGMVGDLSFMTSELIQSFLAGLAASGAITSALRLITKAAF 154 (396)
Q Consensus 77 ~~~~~~i~~~~--~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la~~~p~~~~~a~~~G~g~aGi~~s~~~ii~~~~~ 154 (396)
+++++.++... .+.+...+|++++++++++|.++|+.|||++|++|.||+||+||+|+||++||+++|++|+++|++.
T Consensus 96 il~i~~l~~~~v~~~~~~~~ff~vt~~~vv~~~~a~a~~qgs~~G~a~~~P~~ytqavm~G~a~aG~l~Sl~~i~tka~~ 175 (406)
T KOG1479|consen 96 ILFIVTLDLALVKTDTWTNGFFLVTLIIVVLLNLANAVVQGSLYGLAGLFPSEYTQAVMSGQALAGTLTSLLRILTKAAF 175 (406)
T ss_pred HHHHHHHHHHhhccCCccchhHHHHHHHHHHHhhhhhhhccchhhhhhcCCHHHHHHHHhcchhHhHHHHHHHHHHHHhc
Confidence 33333333222 3555678999999999999999999999999999999999999999999999999999999999997
Q ss_pred cCCccccchhhhHHhHHHHHHHHHHHHHHHHHcCCChHHHHHHHhhhccCCccccchhhhccCccCcccccccccccccH
Q 016029 155 ENSKDGLRKGALLFFAISSFFEFLCVILYAFVFPKIPIVKYYRNKAASEGSKTVAADLAAGGIQMLSKEEVEKCSERFSN 234 (396)
Q Consensus 155 ~~~~~~~~~~a~~yF~ia~~~~~~~~~~~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (396)
+|+ +++|.+||+++.++.++|+++|. .++|+|++|||++++.+++++ ++++++|++++.+ ++..+.
T Consensus 176 ~~~----~~sA~~yF~~s~~~~llC~i~y~-~l~~lpf~~yy~~~~~~~~~~-----l~~~~~~~~~~~~----~~~~~~ 241 (406)
T KOG1479|consen 176 SDS----RTSALIYFITSTVILLLCFVLYL-VLPKLPFVRYYREKAGSIGSK-----LAAEGIESDSSLS----NEDDSL 241 (406)
T ss_pred CCC----CceeehhHHHHHHHHHHHHHHHH-HhhcchHHHHHhhhccccccc-----ccccccccccccc----cccchH
Confidence 653 48999999999999999999999 999999999999886655433 1222222222111 111278
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccccCceEeeccCCCCCCchHHHHHHHH-HHHhhhhhhhhccccccccCCcchHHHHHH
Q 016029 235 KQLLLQNIDYAIDMFVIYTLTLSIFPGFLSEDTGSHSLGGWYAVVLIAM-YNVGDLIGRYIPLLKFFKLESRKYITAATL 313 (396)
Q Consensus 235 ~~v~k~i~~~~~~~~l~f~vTl~vFP~i~~~~~~~~~~~~w~~~~~~~~-fn~gD~iGR~l~~~~~~~~~~~~~l~i~sl 313 (396)
|+++||+++++++++++|+||+++|||+.+++++.+..++|++.+...+ ||++|++||.++.+. ++++||.++++++
T Consensus 242 ~~i~~k~~~~~~~i~lvy~VTLsiFPg~~~~~~~~~~~~~~y~~~~~~l~fN~~d~vG~~~a~~~--~~~~~r~l~i~v~ 319 (406)
T KOG1479|consen 242 WDIFKKIKDLAFNIFLVYFVTLSIFPGFCSEVKSSGLLGDWYALLLVFLSFNVFDLIGSILAALL--TWPDPRKLTIPVL 319 (406)
T ss_pred HHHHHHHHHHhhchheeeeeeeEecchhhcccccCcccchhhHHHHHHHHhHHHHHhhhhhhhcc--cCCCCceehHHHH
Confidence 9999999999999999999999999999999877777779998777666 999999999888765 5578999999999
Q ss_pred HHHHHHHHHHhhcc------cCCchHHHHHHHHHhhccccccceeeeccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHH
Q 016029 314 SRFLLVPAFYFTAK------YGDQGWMIMLTSFLGLSNGYLTVCVLTAAPKGYKGPEQNALGNLLVLFLLGGIFAGATLD 387 (396)
Q Consensus 314 ~R~~fiplfll~~~------~~~d~~~~i~~~lfgltnGyl~t~~mi~~p~~v~~~e~e~ag~~~~~~l~~Gl~~Gs~~s 387 (396)
+|++|||+|.+||+ ++||+|+++++.++|+||||++++.|++|||+++++|||.||.+|++++..|+++|+.+|
T Consensus 320 lR~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s 399 (406)
T KOG1479|consen 320 LRLLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLS 399 (406)
T ss_pred HHHHHHHHHHHhccCCCCceecCchHHHHHHHHHHhccchHhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 99999999999997 469999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcC
Q 016029 388 WLWLIGK 394 (396)
Q Consensus 388 ~~~~~~~ 394 (396)
++|+..+
T Consensus 400 ~l~~~~~ 406 (406)
T KOG1479|consen 400 WVFVIMV 406 (406)
T ss_pred HHHHHhC
Confidence 9998764
No 3
>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs. Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.
Probab=100.00 E-value=1.7e-61 Score=469.08 Aligned_cols=287 Identities=29% Similarity=0.557 Sum_probs=4.0
Q ss_pred HHHHHHHhhhhhhhccchhhccccCCHHHHHHHHhhhhhHhHHHHHHHHHHHhhccCCccccchhhhHHhHHHHHHHHHH
Q 016029 100 CVISGAFGVADANVQGGMVGDLSFMTSELIQSFLAGLAASGAITSALRLITKAAFENSKDGLRKGALLFFAISSFFEFLC 179 (396)
Q Consensus 100 l~~~~~~g~~~~~~q~s~~~la~~~p~~~~~a~~~G~g~aGi~~s~~~ii~~~~~~~~~~~~~~~a~~yF~ia~~~~~~~ 179 (396)
|+.++++|+++|++|||.+|++|.+|++|+|++|+|||+||++++++|+++++..+| ++.++.+||+++++++++|
T Consensus 1 m~~v~~~~~~~~~~q~s~~glas~~p~~y~~a~~~Gq~~aGv~~s~l~ii~~~~~~~----~~~~a~~yF~~a~~i~i~~ 76 (309)
T PF01733_consen 1 MISVALIGFANAVLQSSLFGLASLFPPKYTQAVMIGQGLAGVIVSLLRIITKASGSD----VKTSAFIYFIIAVLIVILC 76 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEEHhhhHHHhccHHHHHhcCCHHHHHHHHhhccHHHHHHHHHHHHHHHhhhc----cchhhhhHHHHHHHHHHHH
Confidence 456778999999999999999999999999999999999999999999999997643 7889999999999999999
Q ss_pred HHHHHHHcCCChHHHHHHHhhhccCCccccchhhhccC-c----cCccccc---ccccccccHHHHHHHHHHHHHHHHHH
Q 016029 180 VILYAFVFPKIPIVKYYRNKAASEGSKTVAADLAAGGI-Q----MLSKEEV---EKCSERFSNKQLLLQNIDYAIDMFVI 251 (396)
Q Consensus 180 ~~~~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~---~~~~~~~~~~~v~k~i~~~~~~~~l~ 251 (396)
+++|. .+.|+|++|+|.+++.+.++++.+++..+++. + .+...++ +++....++++++|++|+++++++++
T Consensus 77 ~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~i~~~ 155 (309)
T PF01733_consen 77 IILYF-ILPRSPFYRYYLEREAKGDERETEEELSSDGEEESESRSEGTFENSKPQEENVFISFWVVLKKIWPYALSIFLV 155 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHH-HhccChHHHHHHhhhcccchhhhhhhhhhhccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHH
Confidence 99999 99999999999766521111111111111000 0 0000011 11122236789999999999999999
Q ss_pred hhhhccccCceEeeccCCCCC--CchH-HHHHHHHHHHhhhhhhhhccccccccCCcchHHHHHHHHHHHHHHHHhhccc
Q 016029 252 YTLTLSIFPGFLSEDTGSHSL--GGWY-AVVLIAMYNVGDLIGRYIPLLKFFKLESRKYITAATLSRFLLVPAFYFTAKY 328 (396)
Q Consensus 252 f~vTl~vFP~i~~~~~~~~~~--~~w~-~~~~~~~fn~gD~iGR~l~~~~~~~~~~~~~l~i~sl~R~~fiplfll~~~~ 328 (396)
|++|+++||+++..+++.+.+ ++|+ |++++++||+||++||.++++++++.+++|++++++++|++|||+|++||+.
T Consensus 156 f~vTl~~FP~it~~v~s~~~~~~~~~f~pv~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~ 235 (309)
T PF01733_consen 156 FFVTLSVFPGITSAVQSSNNPDWSSYFVPVVLFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQ 235 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhheeeeccceeeeeeccccCCCccHHHHHHHHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999998766554332 2455 4789999999999999999998776568899999999999999999999853
Q ss_pred ----------CCchHHHHHHHHHhhccccccceeeeccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 016029 329 ----------GDQGWMIMLTSFLGLSNGYLTVCVLTAAPKGYKGPEQNALGNLLVLFLLGGIFAGATLDWLWL 391 (396)
Q Consensus 329 ----------~~d~~~~i~~~lfgltnGyl~t~~mi~~p~~v~~~e~e~ag~~~~~~l~~Gl~~Gs~~s~~~~ 391 (396)
+||+++++++++||+||||++|++|++||++++++|||.||.+|++++++|+++||++|+++.
T Consensus 236 p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls~~~~ 308 (309)
T PF01733_consen 236 PRPRYLPVLFNSDAWFIILMLLFGFTNGYLSTLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLSFLLV 308 (309)
T ss_dssp -------------------------------HHHH--------------------------------------
T ss_pred cccccCCCcccchHHHHHHHHHHHHccchhhhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 489999999999999999999999999999999999999999999999999999999999875
No 4
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=99.95 E-value=2.2e-26 Score=227.21 Aligned_cols=361 Identities=16% Similarity=0.126 Sum_probs=252.9
Q ss_pred CeeeeehhhhhhhhhhHhhch-HHHHhhhcCC---CC-----C------------cce----eehhhhHHHHHHHHHHHH
Q 016029 1 MAVCWLLGNGCLFSWNSMLTV-VDYYVFLFPQ---YH-----P------------SRI----LTLVYQPFALITLAILAY 55 (396)
Q Consensus 1 Y~~F~~lGi~~LlpwN~~ita-~~Yf~~~~~~---~~-----~------------~~~----~~~~~~~~~l~~~~~~~~ 55 (396)
|+.|+++|...-.+|=.+++| .|--.++-.+ .+ + ... ..++-.+|.++..++.++
T Consensus 2 ~~~fw~~Gl~Nn~~yvv~lsaA~di~~~~~~~~~~~~~~~~~p~~~~~~~~~~~c~~~~t~~Vlladi~P~l~~Kl~aP~ 81 (402)
T PF02487_consen 2 YVAFWLLGLCNNFLYVVMLSAAHDIVGEQKASPNSSHVDPDPPSTTLPSSSRRDCKSVSTGAVLLADILPSLLVKLIAPF 81 (402)
T ss_pred hhHHHHHHHhcchhHhhhHHhHHHHhhccccCCCCCCCCCCCCCCcCCCccCCCCCcccchHHHHHHHHHHHHHHHHhHh
Confidence 578999999999999999995 5888843210 00 0 111 445566788888899999
Q ss_pred hhccCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHHHHHhhhhhhhccchhhccccCCHHHHHHHHhh
Q 016029 56 HEAKIDTRRRIIFGYILFFASSLLVLVLDLATSGKGGLGTFIGICVISGAFGVADANVQGGMVGDLSFMTSELIQSFLAG 135 (396)
Q Consensus 56 ~~~~~~~~~Ri~~~~~~~~i~~~~~~~i~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la~~~p~~~~~a~~~G 135 (396)
+.||+|++.|+..+..++.+.++++. .++ ..+..++.+++.|.++|+.|.+.+++++.+|++.++++.+|
T Consensus 82 fi~~v~y~~Ri~~~~~l~~~g~l~va---~~~-------~v~~~l~Gv~las~ssg~GE~tfL~lt~~y~~~~l~~wssG 151 (402)
T PF02487_consen 82 FIHRVPYWIRILICVALSAAGMLLVA---FSP-------SVWVRLLGVVLASLSSGLGEVTFLSLTHFYGKSSLSAWSSG 151 (402)
T ss_pred hhhhccchHHHHHHHHHHHHHHhhee---ecc-------chhHHHHHHHHHhhhhhhhHHHHHHHHHhcCccccccccCC
Confidence 99999999999999888888776542 322 15778999999999999999999999999999999999999
Q ss_pred hhhHhHHHHHHHHHHHhhccCCccccchhhhHHhHHHHHHHHHHHHHHHHHcCCChHHHHHHHhhhc-cCCccccchhhh
Q 016029 136 LAASGAITSALRLITKAAFENSKDGLRKGALLFFAISSFFEFLCVILYAFVFPKIPIVKYYRNKAAS-EGSKTVAADLAA 214 (396)
Q Consensus 136 ~g~aGi~~s~~~ii~~~~~~~~~~~~~~~a~~yF~ia~~~~~~~~~~~~~~l~k~~~~~~~~~~~~~-~~~~~~~~~~~~ 214 (396)
+|.||+++++.+...+. . +-+++. ++ .+...+.++-++.|+ .+.+.|-.+ +..++ +.+++.++|..+
T Consensus 152 TG~aGl~Ga~~y~~lT~-~---g~s~~~-tl---l~~~~lp~~~~~~~f-~~L~~~~~~---~~~~~~~~~~~~~~~~~~ 219 (402)
T PF02487_consen 152 TGGAGLVGALYYLGLTT-L---GLSPRT-TL---LIMLVLPAIFLLSYF-FLLPSPPTN---RPYQESESEDEAEDDLLE 219 (402)
T ss_pred cChhhHHHHHHHHHHHH-h---CcCHHH-HH---HHHHHHHHHHHHHHH-Hhhcccccc---CCCcccCCCCcccccccc
Confidence 99999999999987776 3 224543 33 334444444455555 343433211 11000 000011111111
Q ss_pred ccCccCcccccccccccccHHHHHHHHHHHHHHHHHHhhhhccccCceEeec--cCC-CCCCchHHHHHHHHHHHhhhhh
Q 016029 215 GGIQMLSKEEVEKCSERFSNKQLLLQNIDYAIDMFVIYTLTLSIFPGFLSED--TGS-HSLGGWYAVVLIAMYNVGDLIG 291 (396)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~v~k~i~~~~~~~~l~f~vTl~vFP~i~~~~--~~~-~~~~~w~~~~~~~~fn~gD~iG 291 (396)
++. .+++.++..+......++..|+..++++.++++|+..+.+-+|+.... +.+ ....+.| ...-++|++|.+++
T Consensus 220 ~~~-~~~~~~~~~~~~~~~k~~~~k~Ll~ymiPL~lVY~aEY~InqGv~~tl~fp~~~~~~r~~Y-~~Y~~~YQ~GVFIS 297 (402)
T PF02487_consen 220 SET-SESKPDSSSKLSFKEKLKRLKPLLWYMIPLFLVYFAEYFINQGVAPTLLFPNSFFSPRDQY-RWYQLLYQLGVFIS 297 (402)
T ss_pred ccc-ccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHhcCCccCCCHHHHH-HHHHHHHHHHHhhh
Confidence 000 000111111111123456677777799999999999888877775321 111 1112322 33378999999999
Q ss_pred hhhccccccccCCcchHHHHHHHHHHHHHHHHhhccc---CCchHHHHHHHHHhhccccccceeeeccCCCCCchhhhhh
Q 016029 292 RYIPLLKFFKLESRKYITAATLSRFLLVPAFYFTAKY---GDQGWMIMLTSFLGLSNGYLTVCVLTAAPKGYKGPEQNAL 368 (396)
Q Consensus 292 R~l~~~~~~~~~~~~~l~i~sl~R~~fiplfll~~~~---~~d~~~~i~~~lfgltnGyl~t~~mi~~p~~v~~~e~e~a 368 (396)
|+...+. +. |++|++++++.+...++++..++ ++.|..+++++.-|+..|-.....+....++++++|||.+
T Consensus 298 RSS~~~~--ri---r~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFs 372 (402)
T PF02487_consen 298 RSSLPFF--RI---RRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFS 372 (402)
T ss_pred hcceeee--eh---hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHH
Confidence 9987654 33 56999999999999999888765 4666666789999999988887778777888999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 016029 369 GNLLVLFLLGGIFAGATLDWLW 390 (396)
Q Consensus 369 g~~~~~~l~~Gl~~Gs~~s~~~ 390 (396)
-...+++-++|+.+++++++.+
T Consensus 373 lg~vsvsds~GI~lAgll~l~l 394 (402)
T PF02487_consen 373 LGAVSVSDSLGILLAGLLGLPL 394 (402)
T ss_pred HHHHHHHhhHHHHHHHHHHHHH
Confidence 9999999999999999999764
No 5
>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]
Probab=99.82 E-value=2.2e-20 Score=174.47 Aligned_cols=356 Identities=18% Similarity=0.157 Sum_probs=242.5
Q ss_pred CeeeeehhhhhhhhhhHhhch-HHHHhhhcCCC------C-----C----cceeehhhhHHHHHHHHHHHHhhccCCcch
Q 016029 1 MAVCWLLGNGCLFSWNSMLTV-VDYYVFLFPQY------H-----P----SRILTLVYQPFALITLAILAYHEAKIDTRR 64 (396)
Q Consensus 1 Y~~F~~lGi~~LlpwN~~ita-~~Yf~~~~~~~------~-----~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 64 (396)
++.|+++|...-..+-.+++| .|...++-++. | . ....-++-.+|+++..+..+++.+|+++..
T Consensus 14 ~~~FwllGLcNN~~YVvmLSAA~DIl~~~~~~~~~~c~~h~~~r~c~~~stg~VLLaDilPsL~iKl~~Pff~~rfpf~~ 93 (409)
T KOG3880|consen 14 AVAFWLLGLCNNYGYVVMLSAAEDILSEQVSDPGPTCIPHNSGRECQSVSTGAVLLADILPSLAIKLTAPFFIHRFPFGF 93 (409)
T ss_pred chHHHHHHHhcccceEeehhhhhhhhccccCCCCCCcccccccccccccccchhhhhhhhHHHHHHHhchhhhhhcccch
Confidence 467999999999999988884 58888776531 1 1 123446678889999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHHHHHhhhhhhhccchhhccccCCHHHHHHHHhhhhhHhHHHH
Q 016029 65 RIIFGYILFFASSLLVLVLDLATSGKGGLGTFIGICVISGAFGVADANVQGGMVGDLSFMTSELIQSFLAGLAASGAITS 144 (396)
Q Consensus 65 Ri~~~~~~~~i~~~~~~~i~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la~~~p~~~~~a~~~G~g~aGi~~s 144 (396)
|+.....+.+..+.++ ..+. .-+..|..+.+.++++|+-|-+..++++.+|+.-...+++|+|.||++++
T Consensus 94 Ri~~~v~~sa~s~~lV---afs~-------s~~~sL~GV~~aSissGlGEiTFL~lss~Y~~~~i~~WSSGTGgAGliGa 163 (409)
T KOG3880|consen 94 RIALVVLLSALSFFLV---AFSN-------SVPMSLLGVVFASISSGLGEITFLALSSRYPSIVIAGWSSGTGGAGLIGA 163 (409)
T ss_pred HHHHHHHHHhcceEEE---Eecc-------chhHHHhhhhhhhhcCCcceeehhhhhccCCCceeccccCCCCcchhhhh
Confidence 9977666665555443 2221 14567888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCccccchhhhHHhHHHHHHHHHHHHHHHHHcCCChHHHHHHHhhhccCCccccchhhhccCccCcccc
Q 016029 145 ALRLITKAAFENSKDGLRKGALLFFAISSFFEFLCVILYAFVFPKIPIVKYYRNKAASEGSKTVAADLAAGGIQMLSKEE 224 (396)
Q Consensus 145 ~~~ii~~~~~~~~~~~~~~~a~~yF~ia~~~~~~~~~~~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (396)
.-+...+-.. .-++| .++ .+...+..+-.+.|+ .+.|.|...+- +..+++.+..+++. .+.+..++
T Consensus 164 ~SYa~lT~~~---~~spk-~Tl---li~l~lP~lfa~~yf-~lL~~pes~~~--ptl~~~~~~~~~~~----~~~~a~e~ 229 (409)
T KOG3880|consen 164 SSYAFLTSWA---NLSPK-STL---LIMLFLPALFAFAYF-FLLKSPESVYS--PTLQPSTEIIPSQY----LPFEAAEE 229 (409)
T ss_pred hHHHHHhhhc---CCChh-hHH---HHHHHHHHHHHHHHH-heeCCCccccC--CCcCccceeccCCC----Cccccccc
Confidence 9998666543 22455 444 355555555567777 66665554331 10011100000000 00000011
Q ss_pred cccccccccHHHH---HHHHHHHHHHHHHHhhhhccccCceEee-------ccC-CCCC-CchHHHHHHHHHHHhhhhhh
Q 016029 225 VEKCSERFSNKQL---LLQNIDYAIDMFVIYTLTLSIFPGFLSE-------DTG-SHSL-GGWYAVVLIAMYNVGDLIGR 292 (396)
Q Consensus 225 ~~~~~~~~~~~~v---~k~i~~~~~~~~l~f~vTl~vFP~i~~~-------~~~-~~~~-~~w~~~~~~~~fn~gD~iGR 292 (396)
++..+.+...++. .|...++++.++++|+..+.+--|+... ..+ ++.. -+||. ..|++|.++.|
T Consensus 230 ~sv~s~~~~~~e~~~~i~pll~~MvPL~~VY~~EY~INQGl~ell~F~c~~g~sls~~sqYRwyq----vlYQlGVFiSR 305 (409)
T KOG3880|consen 230 KSVPSRRLGLKETLKRIKPLLKYMVPLALVYFAEYFINQGLAELLLFPCSHGFSLSKDSQYRWYQ----VLYQLGVFISR 305 (409)
T ss_pred ccCchhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhEEeccccCCccchhhcchhhh----eeeeeeEEEEe
Confidence 1111112223333 3344458899999999766555444211 001 1111 15884 48999999999
Q ss_pred hhccccccccCCcchHHHHHHHHHHHHHHHHhhccc---CCchHHHHHHHHHhhccccccceeeeccCCCCCchhhhhhh
Q 016029 293 YIPLLKFFKLESRKYITAATLSRFLLVPAFYFTAKY---GDQGWMIMLTSFLGLSNGYLTVCVLTAAPKGYKGPEQNALG 369 (396)
Q Consensus 293 ~l~~~~~~~~~~~~~l~i~sl~R~~fiplfll~~~~---~~d~~~~i~~~lfgltnGyl~t~~mi~~p~~v~~~e~e~ag 369 (396)
+.-++.+. +.+|.+.+++++..-.|++..++ ++.|..+++++.=|+-.|-.....+-.-.++++|++||.|.
T Consensus 306 SS~~~~~~-----p~l~~LailQ~vNl~ff~~~a~~~ftpsi~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~rEfam 380 (409)
T KOG3880|consen 306 SSINLFTM-----PYLWLLAILQFVNLLFFLLQAWYWFTPSIWIVFALILFEGLLGGASYVNTFHNIHKETEPDVREFAM 380 (409)
T ss_pred ccceEEec-----hHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcCchHHHHHHHHHhhcCCchHHHHhH
Confidence 98877644 36899999999999999998863 45555555677778887755555555556889999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 016029 370 NLLVLFLLGGIFAGATLDWL 389 (396)
Q Consensus 370 ~~~~~~l~~Gl~~Gs~~s~~ 389 (396)
...+..-+.|+...++++..
T Consensus 381 savs~sDS~Gi~lA~~lalp 400 (409)
T KOG3880|consen 381 SAVSISDSIGIFLAGLLALP 400 (409)
T ss_pred hhheecchhhHHHHHHHhcc
Confidence 99999999999999998864
No 6
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=98.72 E-value=7.5e-07 Score=86.93 Aligned_cols=122 Identities=9% Similarity=0.033 Sum_probs=75.0
Q ss_pred hhhhHhhchHHHHhhhcCCCC-CcceeehhhhHHHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhhccCCCC
Q 016029 13 FSWNSMLTVVDYYVFLFPQYH-PSRILTLVYQPFALITLAILAYHEAKIDTRRRIIFGYILFFASSLLVLVLDLATSGKG 91 (396)
Q Consensus 13 lpwN~~ita~~Yf~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~i~~~~~~~i~~~~~~~~ 91 (396)
..++.+-.+.+++.+++.-+. ...++...+.....+..++...+.+|.+.+.-+..+..+..+..++....+
T Consensus 9 ~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~------- 81 (379)
T TIGR00881 9 LVRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFST------- 81 (379)
T ss_pred HhHHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhh-------
Confidence 456666667778877664321 112333345555556666667788888887777777666665555443211
Q ss_pred CchHHHHHHHHHHHHhhhhhhhccchhhcccc-CCHHH----HHHHHhhhhhHhHHHH
Q 016029 92 GLGTFIGICVISGAFGVADANVQGGMVGDLSF-MTSEL----IQSFLAGLAASGAITS 144 (396)
Q Consensus 92 ~~~~f~~~l~~~~~~g~~~~~~q~s~~~la~~-~p~~~----~~a~~~G~g~aGi~~s 144 (396)
.++..++..++.|++.+.......++.+. +|++. ......+++++++++.
T Consensus 82 ---~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~ 136 (379)
T TIGR00881 82 ---SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLP 136 (379)
T ss_pred ---hHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHH
Confidence 15555566677888888888888877544 56543 3345566777777766
No 7
>TIGR00893 2A0114 d-galactonate transporter.
Probab=98.69 E-value=2.8e-06 Score=82.98 Aligned_cols=123 Identities=9% Similarity=0.053 Sum_probs=72.0
Q ss_pred hhHhhchHHHHhhhcCCCC-CcceeehhhhHHHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCc
Q 016029 15 WNSMLTVVDYYVFLFPQYH-PSRILTLVYQPFALITLAILAYHEAKIDTRRRIIFGYILFFASSLLVLVLDLATSGKGGL 93 (396)
Q Consensus 15 wN~~ita~~Yf~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~i~~~~~~~i~~~~~~~~~~ 93 (396)
++.+-.+.+++++++.-+. ...+....+.....+...+...+.+|.+.+.-+..+..+..+..++.. ...
T Consensus 10 ~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~---~~~------ 80 (399)
T TIGR00893 10 RANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQA---FAG------ 80 (399)
T ss_pred HHhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHH---HHc------
Confidence 3444456677776654221 113334446666666667777788888866555556555555444432 211
Q ss_pred hHHHHHHHHHHHHhhhhhhhccchhhcccc-CCHHH----HHHHHhhhhhHhHHHHHHH
Q 016029 94 GTFIGICVISGAFGVADANVQGGMVGDLSF-MTSEL----IQSFLAGLAASGAITSALR 147 (396)
Q Consensus 94 ~~f~~~l~~~~~~g~~~~~~q~s~~~la~~-~p~~~----~~a~~~G~g~aGi~~s~~~ 147 (396)
.++..++.-++.|++.+........+.+. +|++. +.....++++++++...+.
T Consensus 81 -~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 138 (399)
T TIGR00893 81 -AYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLV 138 (399)
T ss_pred -CHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHH
Confidence 15555566678888888888877777655 56543 3444566666666665444
No 8
>TIGR00895 2A0115 benzoate transport.
Probab=98.50 E-value=8.3e-06 Score=80.21 Aligned_cols=107 Identities=12% Similarity=0.011 Sum_probs=65.6
Q ss_pred HHHHHHHHHhhhhhhhhccccccccCCcchHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHhhccccccceeeeccC
Q 016029 278 VVLIAMYNVGDLIGRYIPLLKFFKLESRKYITAATLSRFLLVPAFYFTAKYGDQGWMIMLTSFLGLSNGYLTVCVLTAAP 357 (396)
Q Consensus 278 ~~~~~~fn~gD~iGR~l~~~~~~~~~~~~~l~i~sl~R~~fiplfll~~~~~~d~~~~i~~~lfgltnGyl~t~~mi~~p 357 (396)
-.....++++..+|+.+..... ++.++|.+......-.+.. +++....++.+...+..+++|+..|-.....+.+..
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 364 (398)
T TIGR00895 288 ATGGALFNFGGVIGSIIFGWLA-DRLGPRVTALLLLLGAVFA--VLVGSTLFSPTLLLLLGAIAGFFVNGGQSGLYALMA 364 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-hhcchHHHHHHHHHHHHHH--HHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456788899999998876532 1223333222222221111 111112345555566778888888777777777778
Q ss_pred CCCCchhhhhhhhHHHHHHHHHHHHHHHHH
Q 016029 358 KGYKGPEQNALGNLLVLFLLGGIFAGATLD 387 (396)
Q Consensus 358 ~~v~~~e~e~ag~~~~~~l~~Gl~~Gs~~s 387 (396)
+..++++|..+-.++.....+|..+|..++
T Consensus 365 ~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~ 394 (398)
T TIGR00895 365 LFYPTAIRATGVGWAIGIGRLGAIIGPILA 394 (398)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 888888888777777777777777776654
No 9
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=98.40 E-value=9e-06 Score=78.65 Aligned_cols=330 Identities=16% Similarity=0.172 Sum_probs=160.6
Q ss_pred hhhhhhHhhchHH-HHhhhcCC-CCCcceeehhhhHHHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhhccC
Q 016029 11 CLFSWNSMLTVVD-YYVFLFPQ-YHPSRILTLVYQPFALITLAILAYHEAKIDTRRRIIFGYILFFASSLLVLVLDLATS 88 (396)
Q Consensus 11 ~LlpwN~~ita~~-Yf~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~i~~~~~~~i~~~~~ 88 (396)
.-+.++.+....+ +..+++.- ...-.+....+.....+.......+.+|.+.+.-+..+..+..+...+.. .. +
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~-~~--~- 83 (352)
T PF07690_consen 8 SGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLA-FA--S- 83 (352)
T ss_dssp HHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH-HH--C-
T ss_pred HHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhh-hh--h-
Confidence 3445555555666 66666542 22223344446667777777777888888766544455555555522222 11 1
Q ss_pred CCCCchHHHHHHHHHHHHhhhhhhhccchhhcccc-CCH-H---HHHHHHhhhhhHhHHHHHHHHHHHhhccCCccccch
Q 016029 89 GKGGLGTFIGICVISGAFGVADANVQGGMVGDLSF-MTS-E---LIQSFLAGLAASGAITSALRLITKAAFENSKDGLRK 163 (396)
Q Consensus 89 ~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la~~-~p~-~---~~~a~~~G~g~aGi~~s~~~ii~~~~~~~~~~~~~~ 163 (396)
+ ++..++..++.|++.+.......++.+. +|+ + .++....+.+++.+++..+.- ...+ .-+ .
T Consensus 84 ---~---~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~---~l~~--~~~--~ 150 (352)
T PF07690_consen 84 ---N---FWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGG---FLIS--YFG--W 150 (352)
T ss_dssp ---C---HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHH---HCCC--HCH--H
T ss_pred ---h---HHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhh---hhhh--ccc--c
Confidence 1 4456677788999999999888888554 565 2 334444555555555533332 2211 101 1
Q ss_pred hhhHHhHHHHHHHHHHHHHHHHHcCCChHHHHHHHhhhccCCccccchhhhccCccCccccccccccccc-HHHHHHH--
Q 016029 164 GALLFFAISSFFEFLCVILYAFVFPKIPIVKYYRNKAASEGSKTVAADLAAGGIQMLSKEEVEKCSERFS-NKQLLLQ-- 240 (396)
Q Consensus 164 ~a~~yF~ia~~~~~~~~~~~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~k~-- 240 (396)
+. .| .+..++.+++.++....+.+.|. +++++++ .+++++++++..+ .+.+.|+
T Consensus 151 ~~-~~-~~~~~~~~~~~il~~~~~~~~~~--------~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~ 207 (352)
T PF07690_consen 151 RW-AF-LISAILSLIAAILFILFLPEPPP--------PRERESP-------------KESESKKPKPLKPGFKSLFKNPV 207 (352)
T ss_dssp CC-HH-HHHHHHHHHHHHHHHCCC---ST--------TTT--SS-------------TTTT--HHHCCCH-CTHHHHHHC
T ss_pred cc-cc-ccccchhhhhhhhHhhhhhhccc--------ccccccc-------------cccccccccccccccccccccch
Confidence 22 23 33333333333332202222111 0000000 0000000011111 2222222
Q ss_pred HHHHHHHHHH---HhhhhccccCceEeeccCCCCCC-chHHHHHHHHHHHhhhhhhhhccccccccCCcchHHHHHHHHH
Q 016029 241 NIDYAIDMFV---IYTLTLSIFPGFLSEDTGSHSLG-GWYAVVLIAMYNVGDLIGRYIPLLKFFKLESRKYITAATLSRF 316 (396)
Q Consensus 241 i~~~~~~~~l---~f~vTl~vFP~i~~~~~~~~~~~-~w~~~~~~~~fn~gD~iGR~l~~~~~~~~~~~~~l~i~sl~R~ 316 (396)
.|......++ .+.......|....+. ...+ ............++..+|+.+.....-+..+++.+.+....-.
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 284 (352)
T PF07690_consen 208 LWILLIAFFLFFFVFSGFSFFLPLYLQEV---LGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLI 284 (352)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHCCHH---HHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhhhhhhhhHHHHHHHHhhcccchhhhhc---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 1212222222 2222333334431111 1111 2334455777788887777665442111222333333333333
Q ss_pred HHHHHHHhhcccCCchHHHHHHHHHhhccccccceeeeccCCCCCchhhhhhhhHHHHHHHHHHHHH
Q 016029 317 LLVPAFYFTAKYGDQGWMIMLTSFLGLSNGYLTVCVLTAAPKGYKGPEQNALGNLLVLFLLGGIFAG 383 (396)
Q Consensus 317 ~fiplfll~~~~~~d~~~~i~~~lfgltnGyl~t~~mi~~p~~v~~~e~e~ag~~~~~~l~~Gl~~G 383 (396)
+....+.+....++..+..+..+++|+..|........+..+.++++++..+..+....-.+|-.+|
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~ig 351 (352)
T PF07690_consen 285 LGALGLLLLPFSSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIG 351 (352)
T ss_dssp HHHHHHCCSHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHC
Confidence 3333333333334455666678889998888888888888888888888888888888777777665
No 10
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=98.32 E-value=0.00033 Score=69.21 Aligned_cols=99 Identities=12% Similarity=0.146 Sum_probs=59.3
Q ss_pred hhhhHHHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHHHHHhhhhhhhccchhh
Q 016029 40 LVYQPFALITLAILAYHEAKIDTRRRIIFGYILFFASSLLVLVLDLATSGKGGLGTFIGICVISGAFGVADANVQGGMVG 119 (396)
Q Consensus 40 ~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~i~~~~~~~i~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~ 119 (396)
..+.....+...+...+.+|...|.-+..+..+..+..+... ..+ .++..++.-++.|++.+.......+
T Consensus 54 ~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~---~~~-------~~~~l~~~~~l~G~~~~~~~~~~~~ 123 (405)
T TIGR00891 54 SAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACG---FAP-------GYITMFIARLVIGIGMGGEYGSSAA 123 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH---Hhc-------cHHHHHHHHHHHHhhhhhhhHHHHH
Confidence 335555566666677788888766655555555555444332 211 1555566677888888888777777
Q ss_pred ccc-cCCHHH----HHHHHhhhhhHhHHHHHHHH
Q 016029 120 DLS-FMTSEL----IQSFLAGLAASGAITSALRL 148 (396)
Q Consensus 120 la~-~~p~~~----~~a~~~G~g~aGi~~s~~~i 148 (396)
+.. ..|++. ......|.+++.+++..+.-
T Consensus 124 ~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~ 157 (405)
T TIGR00891 124 YVIESWPKHLRNKASGLLISGYAVGAVVAAQVYS 157 (405)
T ss_pred HHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 654 456553 34445666666666655443
No 11
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=98.30 E-value=0.00011 Score=71.34 Aligned_cols=334 Identities=13% Similarity=0.048 Sum_probs=158.8
Q ss_pred hhhhhhHhhchHHHHhhhcCCCC-CcceeehhhhHHHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhhccCC
Q 016029 11 CLFSWNSMLTVVDYYVFLFPQYH-PSRILTLVYQPFALITLAILAYHEAKIDTRRRIIFGYILFFASSLLVLVLDLATSG 89 (396)
Q Consensus 11 ~LlpwN~~ita~~Yf~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~i~~~~~~~i~~~~~~ 89 (396)
+.+.+.......++|...+..+. .-.+....+.....+.......+.+|.+.|+-+..+..+..+..++....+... +
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~-~ 89 (365)
T TIGR00900 11 SLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLG-G 89 (365)
T ss_pred HHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcC-C
Confidence 34455555556666665543321 112333335555556666666778888766555555555555444444333211 1
Q ss_pred CCCchHHHHHHHHHHHHhhhhhhhccchhhcccc-CCHHH----HHHHHhhhhhHhHHHHHHHHHHHhhccCCccccchh
Q 016029 90 KGGLGTFIGICVISGAFGVADANVQGGMVGDLSF-MTSEL----IQSFLAGLAASGAITSALRLITKAAFENSKDGLRKG 164 (396)
Q Consensus 90 ~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la~~-~p~~~----~~a~~~G~g~aGi~~s~~~ii~~~~~~~~~~~~~~~ 164 (396)
..++..++..++.|++.+.......++.+. .|++. .+....+.+++++++..+--...... +. .
T Consensus 90 ----~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~-----g~--~ 158 (365)
T TIGR00900 90 ----LNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATL-----GI--K 158 (365)
T ss_pred ----CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh-----hH--H
Confidence 125556666778899999988888888655 45442 33445666666666655443222111 11 1
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHcCCChHHHHHHHhhhccCCccccchhhhccCccCcccccccccccccHHHHHH--HHH
Q 016029 165 ALLFFAISSFFEFLCVILYAFVFPKIPIVKYYRNKAASEGSKTVAADLAAGGIQMLSKEEVEKCSERFSNKQLLL--QNI 242 (396)
Q Consensus 165 a~~yF~ia~~~~~~~~~~~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~k--~i~ 242 (396)
. .| .+..+..+++..... .+ |.|. ++++++++. +++..++.+++.+++.| ..+
T Consensus 159 ~-~~-~~~~~~~~~~~~~~~-~~-~~~~------~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~ 213 (365)
T TIGR00900 159 W-AI-WVDAVGFAISALLIV-SV-RIPE------LAASEIQAL---------------SNAVLRDTREGIKFVLKNPLLR 213 (365)
T ss_pred H-HH-HHHHHHHHHHHHHHH-hc-cccc------CCCcccccc---------------chhHHHHHHhHHHHHHcCcHHH
Confidence 1 12 222222233332222 11 2110 000000000 00000000111222222 222
Q ss_pred HHHHHHHHHhhhh---c-cccCceEeeccCCCCCCchHHHHHHHHHHHhhhhhhhhccccccccCCcchHHHHHHHHHHH
Q 016029 243 DYAIDMFVIYTLT---L-SIFPGFLSEDTGSHSLGGWYAVVLIAMYNVGDLIGRYIPLLKFFKLESRKYITAATLSRFLL 318 (396)
Q Consensus 243 ~~~~~~~l~f~vT---l-~vFP~i~~~~~~~~~~~~w~~~~~~~~fn~gD~iGR~l~~~~~~~~~~~~~l~i~sl~R~~f 318 (396)
......++..... . ..+|-...+. .+. ++-..-.....++++..+|+....+.. ++.+++.+...+.. ...
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~-~~~ 288 (365)
T TIGR00900 214 TLLLLALLFNLVFAPAIVALFPYVQSKY--LGR-GSTHYGWVLAAFGLGALLGALLLGLLG-RYFKRMALMTGAIF-VIG 288 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHH--hCC-chHHHHHHHHHHHHHHHHHHHHHHHHH-HHhchhHHHHHHHH-HHH
Confidence 2222222211111 1 3345443211 111 122233456678889999888765421 12233333222111 111
Q ss_pred HHHHHhhcccC-CchHHHHHHHHHhhccccccceeeeccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHH
Q 016029 319 VPAFYFTAKYG-DQGWMIMLTSFLGLSNGYLTVCVLTAAPKGYKGPEQNALGNLLVLFLLGGIFAGATLD 387 (396)
Q Consensus 319 iplfll~~~~~-~d~~~~i~~~lfgltnGyl~t~~mi~~p~~v~~~e~e~ag~~~~~~l~~Gl~~Gs~~s 387 (396)
+..+.+ ...+ +.+...+..+++|+..|-.......+.++.+++++|..+..+.......|-.+|..++
T Consensus 289 ~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~ 357 (365)
T TIGR00900 289 LAILVV-GLTPPNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILA 357 (365)
T ss_pred HHHHHH-HhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111 1112 2344455688889988877777777777888888888888888877778877777654
No 12
>KOG4255 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.27 E-value=1.6e-05 Score=75.77 Aligned_cols=185 Identities=18% Similarity=0.155 Sum_probs=115.7
Q ss_pred ehhhhhhhhhhHhhchHHHHhhhcCC-CCCcceeehhhhHHHHHHHHHHHHhhccCCc---chhhHHHHHHH-HHHHHHH
Q 016029 6 LLGNGCLFSWNSMLTVVDYYVFLFPQ-YHPSRILTLVYQPFALITLAILAYHEAKIDT---RRRIIFGYILF-FASSLLV 80 (396)
Q Consensus 6 ~lGi~~LlpwN~~ita~~Yf~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---~~Ri~~~~~~~-~i~~~~~ 80 (396)
+.|+|+-..-|...-..+-.....|+ -+..+|.++.-|+.|+.-.++.. +.|..+. ..-+++.+... .++.+++
T Consensus 18 lfG~gswa~vn~~wv~lp~lv~elpe~wslpsyl~vvVqla~lgpLi~tl-lhk~~~~~i~~VPiif~ll~~a~v~~l~l 96 (439)
T KOG4255|consen 18 LFGMGSWAGVNGLWVELPLLVKELPEGWSLPSYLSVVVQLANLGPLIVTL-LHKGAPGTIPTVPIIFVLLLLACVCQLGL 96 (439)
T ss_pred HHccchHhhhcceeeehhHHHhhcCcccccchHHHHHHHHHcchhHHHHH-HHhhCCCcCCCCCchhHHHHHHHHHHHHH
Confidence 45666666666655555555555554 34556777777777776554433 3332222 22333444333 4555555
Q ss_pred HHhhhccCCCCCchHHHHHHHHHHHHhhhhhhhccchhhccccCCHHHHHHHHhhhhhHhHHHHHHHHHHHhhc---cCC
Q 016029 81 LVLDLATSGKGGLGTFIGICVISGAFGVADANVQGGMVGDLSFMTSELIQSFLAGLAASGAITSALRLITKAAF---ENS 157 (396)
Q Consensus 81 ~~i~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la~~~p~~~~~a~~~G~g~aGi~~s~~~ii~~~~~---~~~ 157 (396)
..+--.+...-+..-=|-.+.+.+...+.++...-..+-+.+++|+.|.+++..|+|++|++++++.++--... +++
T Consensus 97 aflW~~ts~V~g~~hS~afl~L~F~LAivdc~SnVtFLPFMs~lpp~fL~afFvG~GLSaLlPsllaLaQGtg~~~C~~n 176 (439)
T KOG4255|consen 97 AFLWHDTSPVFGALHSWAFLSLLFGLAIVDCTSNVTFLPFMSQLPPAFLNAFFVGMGLSALLPSLLALAQGTGRLECDLN 176 (439)
T ss_pred HHHHhcchhhhcCcchHHHHHHHHHHHHHHhhccchhhhhhhhCChHHHHHHHHhccHHHHHHHHHHHHccCCceeecCC
Confidence 44311110000111112344555666777888888999999999999999999999999999999887653221 111
Q ss_pred --c---cccchhhhHHhHHHHHHHHHHHHHHHHHcCCChH
Q 016029 158 --K---DGLRKGALLFFAISSFFEFLCVILYAFVFPKIPI 192 (396)
Q Consensus 158 --~---~~~~~~a~~yF~ia~~~~~~~~~~~~~~l~k~~~ 192 (396)
+ -.++.+..+||.+-..++..|++.|+ .+.|++-
T Consensus 177 ~t~~r~fP~rFs~s~FFl~l~~~~~~alaAF~-vL~r~~~ 215 (439)
T KOG4255|consen 177 GTPGRPFPPRFSVSTFFLALFAFTCAALAAFF-VLYRLGA 215 (439)
T ss_pred CCCCCCCCCCccHHHHHHHHHHHHHHHHHHHH-HHHhcCC
Confidence 1 13567889999999999999999998 7766543
No 13
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=98.21 E-value=0.00016 Score=70.36 Aligned_cols=110 Identities=10% Similarity=-0.033 Sum_probs=59.8
Q ss_pred HHHHHHHHHHhhhhhhhhccccccccCCcchHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHhhccccccceeeecc
Q 016029 277 AVVLIAMYNVGDLIGRYIPLLKFFKLESRKYITAATLSRFLLVPAFYFTAKYGDQGWMIMLTSFLGLSNGYLTVCVLTAA 356 (396)
Q Consensus 277 ~~~~~~~fn~gD~iGR~l~~~~~~~~~~~~~l~i~sl~R~~fiplfll~~~~~~d~~~~i~~~lfgltnGyl~t~~mi~~ 356 (396)
.......+++++.+||....+..-+..+++.+.+..+.-.+...+....+ ..+.+......++.++..|-..+......
T Consensus 242 ~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~~~~~~~ 320 (377)
T TIGR00890 242 LVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIP-MLNDVLFLATVALVFFTWGGTISLFPSLV 320 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcc-cchhHHHHHHHHHHHHHhccchhccHHHH
Confidence 34557789999999998875521122222222222222211111111111 11223333445677777776665555555
Q ss_pred CCCCCchhhhhhhhHHHHHHHHHHHHHHHHH
Q 016029 357 PKGYKGPEQNALGNLLVLFLLGGIFAGATLD 387 (396)
Q Consensus 357 p~~v~~~e~e~ag~~~~~~l~~Gl~~Gs~~s 387 (396)
++..++++|..+-.+......+|-.+|..+.
T Consensus 321 ~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~ 351 (377)
T TIGR00890 321 SDIFGPANSAANYGFLYTAKAVAGIFGGLIA 351 (377)
T ss_pred HHHhhhhhhhhHhHHHHHHHHHHHHHHHHHH
Confidence 6667777787776677777777777776654
No 14
>TIGR00898 2A0119 cation transport protein.
Probab=98.10 E-value=0.00043 Score=71.32 Aligned_cols=103 Identities=17% Similarity=0.048 Sum_probs=53.0
Q ss_pred HHHHHHhhhhhhhhccccccccCCcchHHHH-HHHHHHHHHHHHhhcccCCc--hHHHHHHHHHhhccccccceeeeccC
Q 016029 281 IAMYNVGDLIGRYIPLLKFFKLESRKYITAA-TLSRFLLVPAFYFTAKYGDQ--GWMIMLTSFLGLSNGYLTVCVLTAAP 357 (396)
Q Consensus 281 ~~~fn~gD~iGR~l~~~~~~~~~~~~~l~i~-sl~R~~fiplfll~~~~~~d--~~~~i~~~lfgltnGyl~t~~mi~~p 357 (396)
.....+.+..|+.+..+..-+. .+|..... .++-.+...++.. .+++ ++..+..++.++..+-.......+.+
T Consensus 361 ~~~~~~~~i~~~~~~~~l~dr~-grr~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (505)
T TIGR00898 361 LFISGLVELPAKLITLLLIDRL-GRRYTMAASLLLAGVALLLLLF---VPVDLYFLRTALAVLGKFGITSAFQMVYLYTA 436 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHH---cCCCchHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4466778888887765421122 33433222 2222222211111 1222 33333444444444444455566777
Q ss_pred CCCCchhhhhhhhHHHHHHHHHHHHHHHHH
Q 016029 358 KGYKGPEQNALGNLLVLFLLGGIFAGATLD 387 (396)
Q Consensus 358 ~~v~~~e~e~ag~~~~~~l~~Gl~~Gs~~s 387 (396)
+..+++.|..+-.+.+..-.+|-.+|..+.
T Consensus 437 e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~ 466 (505)
T TIGR00898 437 ELYPTVVRNLGVGVCSTMARVGSIISPFLV 466 (505)
T ss_pred ccccHHHHhhhHhHHHHHHHHHHHHHhHHH
Confidence 888888888776666666666666665543
No 15
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=98.10 E-value=0.00047 Score=67.75 Aligned_cols=105 Identities=10% Similarity=-0.004 Sum_probs=59.4
Q ss_pred hhhhHhhchHHHHhhhcCCCC-CcceeehhhhHHHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhhccCCCC
Q 016029 13 FSWNSMLTVVDYYVFLFPQYH-PSRILTLVYQPFALITLAILAYHEAKIDTRRRIIFGYILFFASSLLVLVLDLATSGKG 91 (396)
Q Consensus 13 lpwN~~ita~~Yf~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~i~~~~~~~i~~~~~~~~ 91 (396)
+.-+.+..+.+++.+.+..++ ...+....+.....+...+...+.+|.+.+.-+..+.++..+..+... ..+
T Consensus 19 ~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~---~~~---- 91 (385)
T TIGR00710 19 LGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLA---LSN---- 91 (385)
T ss_pred HHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHH---HHc----
Confidence 344555556677766654321 112333345555566666667778888765555555555554444332 111
Q ss_pred CchHHHHHHHHHHHHhhhhhhhccchhhcccc-CCHH
Q 016029 92 GLGTFIGICVISGAFGVADANVQGGMVGDLSF-MTSE 127 (396)
Q Consensus 92 ~~~~f~~~l~~~~~~g~~~~~~q~s~~~la~~-~p~~ 127 (396)
.++..++..++.|++.+.......++... +|++
T Consensus 92 ---~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~ 125 (385)
T TIGR00710 92 ---NIETLLVLRFVQAFGASAGSVISQALVRDIYPGE 125 (385)
T ss_pred ---cHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcH
Confidence 14445555677888888888777777654 5544
No 16
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=98.09 E-value=0.00026 Score=69.35 Aligned_cols=98 Identities=12% Similarity=0.066 Sum_probs=53.8
Q ss_pred HHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHHHHHhhhhhhhccchhhcccc-CCHH
Q 016029 49 TLAILAYHEAKIDTRRRIIFGYILFFASSLLVLVLDLATSGKGGLGTFIGICVISGAFGVADANVQGGMVGDLSF-MTSE 127 (396)
Q Consensus 49 ~~~~~~~~~~~~~~~~Ri~~~~~~~~i~~~~~~~i~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la~~-~p~~ 127 (396)
...+...+.+|...|.-+..+..+..+..++....+... ..+....+..++.-++.|++.+..+.....+.+. .|++
T Consensus 51 ~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~ 128 (394)
T TIGR00883 51 GAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYA--TIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPG 128 (394)
T ss_pred HHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChh--hhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcc
Confidence 344555677888776666666666666555543222110 0000111233444567788877777777666554 3432
Q ss_pred ----HHHHHHhhhhhHhHHHHHHHH
Q 016029 128 ----LIQSFLAGLAASGAITSALRL 148 (396)
Q Consensus 128 ----~~~a~~~G~g~aGi~~s~~~i 148 (396)
.......|.+++.++..++..
T Consensus 129 ~r~~~~~~~~~~~~~G~~i~~~~~~ 153 (394)
T TIGR00883 129 KRGFYGSFQQVGAPVGLLLAALTVL 153 (394)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666655543
No 17
>PRK11663 regulatory protein UhpC; Provisional
Probab=98.07 E-value=0.0011 Score=67.32 Aligned_cols=97 Identities=6% Similarity=-0.041 Sum_probs=53.0
Q ss_pred hhhHHHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHHHHHhhhhhhhccchhhc
Q 016029 41 VYQPFALITLAILAYHEAKIDTRRRIIFGYILFFASSLLVLVLDLATSGKGGLGTFIGICVISGAFGVADANVQGGMVGD 120 (396)
Q Consensus 41 ~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~i~~~~~~~i~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~l 120 (396)
.+.+...+.......+.+|...+.=+..+..+..+.+++.. ..+ .++..++.-++.|++.|........+
T Consensus 66 ~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~---~~~-------~~~~l~~~~~l~g~~~g~~~~~~~~~ 135 (434)
T PRK11663 66 LFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFG---FSS-------SLWAFALLWVLNAFFQGWGWPVCAKL 135 (434)
T ss_pred HHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHH---HHh-------HHHHHHHHHHHHHHHHHccchHHHHH
Confidence 34555555566666778888776444445555544444332 221 13333333445667666666666666
Q ss_pred -cccCCHHH----HHHHHhhhhhHhHHHHHHH
Q 016029 121 -LSFMTSEL----IQSFLAGLAASGAITSALR 147 (396)
Q Consensus 121 -a~~~p~~~----~~a~~~G~g~aGi~~s~~~ 147 (396)
+..+|++. +.....++++++++...+.
T Consensus 136 ~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~ 167 (434)
T PRK11663 136 LTAWYSRTERGGWWAIWNTAHNVGGALIPLVV 167 (434)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567654 3444566677777665443
No 18
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=98.06 E-value=0.0002 Score=73.20 Aligned_cols=110 Identities=15% Similarity=0.124 Sum_probs=67.0
Q ss_pred HHHHHHHHHhhhhhhhhccccc-cccCCcchHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHhhccccccceeeecc
Q 016029 278 VVLIAMYNVGDLIGRYIPLLKF-FKLESRKYITAATLSRFLLVPAFYFTAKYGDQGWMIMLTSFLGLSNGYLTVCVLTAA 356 (396)
Q Consensus 278 ~~~~~~fn~gD~iGR~l~~~~~-~~~~~~~~l~i~sl~R~~fiplfll~~~~~~d~~~~i~~~lfgltnGyl~t~~mi~~ 356 (396)
-....++.+++.++|.+..+.. ....+++.......+-+.....++++...++.+..++..+++|+..|-.....+...
T Consensus 279 g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~~~~~~~~~~ 358 (455)
T TIGR00892 279 AFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFGSVGALLFEVL 358 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhchHHHHHHHHH
Confidence 3456678899999887654421 111122222222333333333333443334555556678999999988877766666
Q ss_pred CCCCCchhhhhhhhHHHHHHHHHHHHHHHHH
Q 016029 357 PKGYKGPEQNALGNLLVLFLLGGIFAGATLD 387 (396)
Q Consensus 357 p~~v~~~e~e~ag~~~~~~l~~Gl~~Gs~~s 387 (396)
.+.++++++..+-.+......+|-.+|..+.
T Consensus 359 ~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~ 389 (455)
T TIGR00892 359 MDLVGAQRFSSAVGLVTIVECCAVLIGPPLA 389 (455)
T ss_pred HHHhhHHHHhhHHhHHHHHHHHHHHccccce
Confidence 7777888888887777777777877776543
No 19
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=98.05 E-value=0.00046 Score=78.29 Aligned_cols=101 Identities=14% Similarity=0.013 Sum_probs=61.5
Q ss_pred hhhHHHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHHHHHhhhhhhhccchhhc
Q 016029 41 VYQPFALITLAILAYHEAKIDTRRRIIFGYILFFASSLLVLVLDLATSGKGGLGTFIGICVISGAFGVADANVQGGMVGD 120 (396)
Q Consensus 41 ~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~i~~~~~~~i~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~l 120 (396)
.+.++..++..+...+.+|+..+.-+..+..+.++..++........ .++..++..++.|++.++......++
T Consensus 55 ~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~l~~~r~l~G~~~~~~~~~~~~~ 127 (1146)
T PRK08633 55 LFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLG-------WFWLAFAVTFLLGAQSAIYSPAKYGI 127 (1146)
T ss_pred HHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHc-------cHHHHHHHHHHHHHHHHhhchHHHhh
Confidence 34555555666666778888777655556555444443332222211 16666677778899999999888888
Q ss_pred ccc-CCHH----HHHHHHhhhhhHhHHHHHHHH
Q 016029 121 LSF-MTSE----LIQSFLAGLAASGAITSALRL 148 (396)
Q Consensus 121 a~~-~p~~----~~~a~~~G~g~aGi~~s~~~i 148 (396)
.+. .|++ .++....+.+++.+++.++--
T Consensus 128 i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~ 160 (1146)
T PRK08633 128 IPELVGKENLSRANGLLEAFTIVAILAGTALFS 160 (1146)
T ss_pred hHHhcCcccchhhhhHHHHHHHHHHHHHHHHHH
Confidence 655 4543 345555666666666655543
No 20
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=98.03 E-value=0.00035 Score=70.56 Aligned_cols=134 Identities=10% Similarity=-0.017 Sum_probs=78.8
Q ss_pred eeeehhhhhhhhhhHhhchHHHHhhhcCCCCC-cceeehhhhHHHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHH
Q 016029 3 VCWLLGNGCLFSWNSMLTVVDYYVFLFPQYHP-SRILTLVYQPFALITLAILAYHEAKIDTRRRIIFGYILFFASSLLVL 81 (396)
Q Consensus 3 ~F~~lGi~~LlpwN~~ita~~Yf~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~i~~~~~~ 81 (396)
.|++.|... |..-...+.+++.+.-+.. .......+.....+.......+.+|...|.-+..++.+..+..++..
T Consensus 11 ~f~~~G~~~----~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~ 86 (410)
T TIGR00885 11 LFALWGFAN----DITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFW 86 (410)
T ss_pred HHHHHHHHH----HhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence 344555443 2333344666766642211 12233334444555566677888999988888888888777665532
Q ss_pred HhhhccCCCCCchHHHHHHHHHHHHhhhhhhhccchhhccc-cCCHHH----HHHHHhhhhhHhHHHHHHH
Q 016029 82 VLDLATSGKGGLGTFIGICVISGAFGVADANVQGGMVGDLS-FMTSEL----IQSFLAGLAASGAITSALR 147 (396)
Q Consensus 82 ~i~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la~-~~p~~~----~~a~~~G~g~aGi~~s~~~ 147 (396)
..... ..|+..++..++.|.+.|..|.+.-.... ..|+++ ++....+++++..++..+-
T Consensus 87 ~~~~~-------~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~ 150 (410)
T TIGR00885 87 PAAEI-------MNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVA 150 (410)
T ss_pred HHHhh-------ccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11211 12666677778899999999987766643 334433 3444456666666665544
No 21
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=98.01 E-value=0.0021 Score=64.13 Aligned_cols=295 Identities=17% Similarity=0.149 Sum_probs=163.6
Q ss_pred hhHHHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHHHHHhhhhhhhccchhhcc
Q 016029 42 YQPFALITLAILAYHEAKIDTRRRIIFGYILFFASSLLVLVLDLATSGKGGLGTFIGICVISGAFGVADANVQGGMVGDL 121 (396)
Q Consensus 42 ~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~i~~~~~~~i~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la 121 (396)
|-....++..++..+..|.+.|.-....+.++++.-++. ..++ .|+..++.=++.|++.|..-+-..+++
T Consensus 57 yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~---alAp-------~f~~Ll~aR~~~g~a~G~f~~i~~~~a 126 (394)
T COG2814 57 YALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLS---ALAP-------SFAVLLLARALAGLAHGVFWSIAAALA 126 (394)
T ss_pred HHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHH---HHhc-------cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555666677888887766555555555554432 2332 188888888899999999999999987
Q ss_pred ccC-CHHH----HHHHHhhhhhHhHHHHHHHHHHHhhccCCccccchhhhHHhHHHHHHHHHHHHHHHHHcCCChHHHHH
Q 016029 122 SFM-TSEL----IQSFLAGLAASGAITSALRLITKAAFENSKDGLRKGALLFFAISSFFEFLCVILYAFVFPKIPIVKYY 196 (396)
Q Consensus 122 ~~~-p~~~----~~a~~~G~g~aGi~~s~~~ii~~~~~~~~~~~~~~~a~~yF~ia~~~~~~~~~~~~~~l~k~~~~~~~ 196 (396)
+.. ||+. +.-++.|..+|=+++.-+-...--.. -+++- |+.++.+-.+..+..+. .+++ -
T Consensus 127 ~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~-------GWR~~-F~~ia~l~ll~~~~~~~-~lP~--~---- 191 (394)
T COG2814 127 ARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLF-------GWRAT-FLAIAVLALLALLLLWK-LLPP--S---- 191 (394)
T ss_pred HHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHh-------hHHHH-HHHHHHHHHHHHHHHHH-hCCC--c----
Confidence 664 5433 45566777777666644443222211 23333 44555444444444443 3441 0
Q ss_pred HHhhhccCCccccchhhhccCccCcccccccccccccHHHHH--HHHHHHHHHHHHHhhhhccccCceEeeccCCCCCCc
Q 016029 197 RNKAASEGSKTVAADLAAGGIQMLSKEEVEKCSERFSNKQLL--LQNIDYAIDMFVIYTLTLSIFPGFLSEDTGSHSLGG 274 (396)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--k~i~~~~~~~~l~f~vTl~vFP~i~~~~~~~~~~~~ 274 (396)
+ .++++ +.+..+..+++ +++|...+..++.+.-.++.|.-+..-.++...-+.
T Consensus 192 -~---~~~~~---------------------~~~~~~~~~~l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~ 246 (394)
T COG2814 192 -E---ISGSL---------------------PGPLRTLLRLLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSV 246 (394)
T ss_pred -c---CCCCC---------------------CcchhHHHHHhcCchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCH
Confidence 0 00000 00000112223 256777777777766666666554321111111112
Q ss_pred hHHHHHHHHHHHhhhhhhhhccccccccCCcchHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHhhcccccccee-e
Q 016029 275 WYAVVLIAMYNVGDLIGRYIPLLKFFKLESRKYITAATLSRFLLVPAFYFTAKYGDQGWMIMLTSFLGLSNGYLTVCV-L 353 (396)
Q Consensus 275 w~~~~~~~~fn~gD~iGR~l~~~~~~~~~~~~~l~i~sl~R~~fiplfll~~~~~~d~~~~i~~~lfgltnGyl~t~~-m 353 (396)
-......+.|.++-.+|-.+.+... .+ +++...+... =+..+.++.+.-.-++.+.....++++|++++-..... +
T Consensus 247 ~~vs~~Ll~~Gv~~~~Gn~~gGrl~-dr-~~~~~l~~~~-~l~a~~~l~l~~~~~~~~~~~~~~~~wg~a~~~~~~~~~~ 323 (394)
T COG2814 247 SAVSLVLLAFGIAGFIGNLLGGRLA-DR-GPRRALIAAL-LLLALALLALTFTGASPALALALLFLWGFAFSPALQGLQT 323 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhc-cc-cchhHHHHHH-HHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 2345668899999999999887532 12 3332222211 11222222222222344555556777888775443222 2
Q ss_pred eccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 016029 354 TAAPKGYKGPEQNALGNLLVLFLLGGIFAGATLDWLWL 391 (396)
Q Consensus 354 i~~p~~v~~~e~e~ag~~~~~~l~~Gl~~Gs~~s~~~~ 391 (396)
..++ ..||.+|.++.+..-+.++|+.+|+.++=..+
T Consensus 324 ~~a~--~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~ 359 (394)
T COG2814 324 RLAR--LAPDAADLAGSLNVAAFNLGIALGAALGGLVL 359 (394)
T ss_pred Hhcc--cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233 45788999999999999999999999875443
No 22
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=97.98 E-value=0.00096 Score=66.48 Aligned_cols=107 Identities=16% Similarity=0.046 Sum_probs=61.7
Q ss_pred HHHHHHHHHhhhhhhhhccccccccCCcchHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHhhccccccceeeeccC
Q 016029 278 VVLIAMYNVGDLIGRYIPLLKFFKLESRKYITAATLSRFLLVPAFYFTAKYGDQGWMIMLTSFLGLSNGYLTVCVLTAAP 357 (396)
Q Consensus 278 ~~~~~~fn~gD~iGR~l~~~~~~~~~~~~~l~i~sl~R~~fiplfll~~~~~~d~~~~i~~~lfgltnGyl~t~~mi~~p 357 (396)
-.....++++..+|+.+.....-+. ++|........-... -+ +.....++.+...+..+++|+..+-..+..+...+
T Consensus 258 ~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 334 (406)
T PRK11551 258 GLVQIAFNIGGALGSLLIGALMDRL-RPRRVVLLIYAGILA-SL-AALAAAPSFAGMLLAGFAAGLFVVGGQSVLYALAP 334 (406)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHH-HH-HHHHhcCcHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3456788999999998876532122 233333222111111 11 11112234444445566777765545555666778
Q ss_pred CCCCchhhhhhhhHHHHHHHHHHHHHHHHH
Q 016029 358 KGYKGPEQNALGNLLVLFLLGGIFAGATLD 387 (396)
Q Consensus 358 ~~v~~~e~e~ag~~~~~~l~~Gl~~Gs~~s 387 (396)
+..++++|..+-.+....-..|..+|..+.
T Consensus 335 ~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~ 364 (406)
T PRK11551 335 LFYPTQVRGTGVGAAVAVGRLGSMAGPLLA 364 (406)
T ss_pred HHcchhhhhhhhhHHHHhhhHHHHHHhhhH
Confidence 888888888887777777777777776654
No 23
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=97.95 E-value=0.0021 Score=64.50 Aligned_cols=101 Identities=10% Similarity=0.097 Sum_probs=58.4
Q ss_pred hhhhHHHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHHHHHhhhhhhhccchhh
Q 016029 40 LVYQPFALITLAILAYHEAKIDTRRRIIFGYILFFASSLLVLVLDLATSGKGGLGTFIGICVISGAFGVADANVQGGMVG 119 (396)
Q Consensus 40 ~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~i~~~~~~~i~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~ 119 (396)
..+.+...+...+...+.+|...+.-+..+..+..+..++....+.. ..++..++.-++.|++.+..+.....
T Consensus 78 ~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~r~l~G~~~~~~~~~~~~ 150 (481)
T TIGR00879 78 SIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFA-------LSVEMLIVGRVLLGIGVGIASALVPM 150 (481)
T ss_pred HHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccc-------cchHHHHHHHHHHHhhhhHHHhHHHH
Confidence 33455555566666677788776555555555555444443222211 12455666777888888888877777
Q ss_pred ccc-cCCHHH----HHHHHhhhhhHhHHHHHHH
Q 016029 120 DLS-FMTSEL----IQSFLAGLAASGAITSALR 147 (396)
Q Consensus 120 la~-~~p~~~----~~a~~~G~g~aGi~~s~~~ 147 (396)
+.+ .+|++. +.....+.++++++..++.
T Consensus 151 ~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~ 183 (481)
T TIGR00879 151 YLSEIAPKALRGALTSLYQLAITFGILVAYGFG 183 (481)
T ss_pred HHHccCChhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 644 456554 3334456666666665554
No 24
>PRK10489 enterobactin exporter EntS; Provisional
Probab=97.94 E-value=0.0013 Score=65.96 Aligned_cols=106 Identities=15% Similarity=0.075 Sum_probs=60.2
Q ss_pred HHHHHHHHhhhhhhhhccccccccCCcchHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHhhccccccceeeeccCC
Q 016029 279 VLIAMYNVGDLIGRYIPLLKFFKLESRKYITAATLSRFLLVPAFYFTAKYGDQGWMIMLTSFLGLSNGYLTVCVLTAAPK 358 (396)
Q Consensus 279 ~~~~~fn~gD~iGR~l~~~~~~~~~~~~~l~i~sl~R~~fiplfll~~~~~~d~~~~i~~~lfgltnGyl~t~~mi~~p~ 358 (396)
.....+.++..+|+....+..-+.++++.+....+.-.+.+ ++....++.+...+.++++|+..|......+.+..+
T Consensus 263 ~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 339 (417)
T PRK10489 263 LLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAV---GLFGLMPMWILAVLCLALFGYLSAISSLLQYTLLQT 339 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHH---HHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34557788888888876553211212233333222222221 111222333344456788888777655554445556
Q ss_pred CCCchhhhhhhhHHHHHHHHHHHHHHHHH
Q 016029 359 GYKGPEQNALGNLLVLFLLGGIFAGATLD 387 (396)
Q Consensus 359 ~v~~~e~e~ag~~~~~~l~~Gl~~Gs~~s 387 (396)
..++++|..+-.+.......|..+|..+.
T Consensus 340 ~~p~~~~g~~~g~~~~~~~~g~~~g~~l~ 368 (417)
T PRK10489 340 QTPDEMLGRINGLWTAQNVTGDAIGAALL 368 (417)
T ss_pred hCCHHHHHHHHHHHHHHHhhhHhHHHHHH
Confidence 66777788887777777777887777665
No 25
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=97.92 E-value=0.0017 Score=63.51 Aligned_cols=106 Identities=11% Similarity=0.057 Sum_probs=58.2
Q ss_pred hhhhHhhchHH-HHhhhcCCC-CCcceeehhhhHHHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhhccCCC
Q 016029 13 FSWNSMLTVVD-YYVFLFPQY-HPSRILTLVYQPFALITLAILAYHEAKIDTRRRIIFGYILFFASSLLVLVLDLATSGK 90 (396)
Q Consensus 13 lpwN~~ita~~-Yf~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~i~~~~~~~i~~~~~~~ 90 (396)
.-|..+-...+ |.++.+.-+ ....++...+.+...+.......+.+|...+..+..+..+..+..+.....+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~----- 89 (366)
T TIGR00886 15 SVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQ----- 89 (366)
T ss_pred HHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhh-----
Confidence 34444445555 466555321 12244445566666677777778888988777777777766665544332110
Q ss_pred CCchHHHHHHHHHHHHhhhhhhhccchhhc-cccCCHHH
Q 016029 91 GGLGTFIGICVISGAFGVADANVQGGMVGD-LSFMTSEL 128 (396)
Q Consensus 91 ~~~~~f~~~l~~~~~~g~~~~~~q~s~~~l-a~~~p~~~ 128 (396)
.++..++.-++.|++.+.... ...+ +..+|++.
T Consensus 90 ----~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~ 123 (366)
T TIGR00886 90 ----SYSVLLLLRLFIGIAGGSFAS-CMPWISFFFPKKI 123 (366)
T ss_pred ----hHHHHHHHHHHHHHhchhhHh-HHHHHHHhcCHhh
Confidence 144444455566666554433 3344 44466553
No 26
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=97.91 E-value=0.0018 Score=62.11 Aligned_cols=304 Identities=15% Similarity=0.180 Sum_probs=159.6
Q ss_pred hhhhhhHhhchHHHHhhhcCCCC-CcceeehhhhHHHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhhccCC
Q 016029 11 CLFSWNSMLTVVDYYVFLFPQYH-PSRILTLVYQPFALITLAILAYHEAKIDTRRRIIFGYILFFASSLLVLVLDLATSG 89 (396)
Q Consensus 11 ~LlpwN~~ita~~Yf~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~i~~~~~~~i~~~~~~ 89 (396)
.-+.++......+.+.+++..++ ...+....+.....+.......+.+|.+.|.-+..+..+..+..+..... +
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~---~-- 85 (352)
T cd06174 11 SGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFA---S-- 85 (352)
T ss_pred HHHhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHh---c--
Confidence 33445555555566655543211 12233344555566666667778888877765556666665555443321 1
Q ss_pred CCCchHHHHHHHHHHHHhhhhhhhccchhhcccc-CCHH----HHHHHHhhhhhHhHHHHHHHHHHHhhccCCccccchh
Q 016029 90 KGGLGTFIGICVISGAFGVADANVQGGMVGDLSF-MTSE----LIQSFLAGLAASGAITSALRLITKAAFENSKDGLRKG 164 (396)
Q Consensus 90 ~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la~~-~p~~----~~~a~~~G~g~aGi~~s~~~ii~~~~~~~~~~~~~~~ 164 (396)
.++..++...+.|++.+..+....++... .|+| ..+....+.++++.++..+.-...... +. .
T Consensus 86 -----~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-----~~--~ 153 (352)
T cd06174 86 -----SLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESL-----GW--R 153 (352)
T ss_pred -----cHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHh-----hH--H
Confidence 15555666678888888888888887655 4442 234444555666666554443322111 11 1
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHcCCChHHHHHHHhhhccCCccccchhhhccCccCcccccccccccccHHHHHHHHHHH
Q 016029 165 ALLFFAISSFFEFLCVILYAFVFPKIPIVKYYRNKAASEGSKTVAADLAAGGIQMLSKEEVEKCSERFSNKQLLLQNIDY 244 (396)
Q Consensus 165 a~~yF~ia~~~~~~~~~~~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~k~i~~~ 244 (396)
..|...+....+..+..+. . . |+.+..
T Consensus 154 -~~~~~~~~~~~~~~~~~~~-~-~--------------------------------------------------~~~~~~ 180 (352)
T cd06174 154 -WLFLILAILGLLLALLLLF-L-L--------------------------------------------------RLLLLL 180 (352)
T ss_pred -HHHHHHHHHHHHHHHHHHH-H-H--------------------------------------------------HHHHHH
Confidence 2222333322222332222 1 1 112222
Q ss_pred HHHHHHHhh---hhccccCceEeeccCCCCCCchHHHHHHHHHHHhhhhhhhhccccccccCCcch-HHHHHHHHHHHHH
Q 016029 245 AIDMFVIYT---LTLSIFPGFLSEDTGSHSLGGWYAVVLIAMYNVGDLIGRYIPLLKFFKLESRKY-ITAATLSRFLLVP 320 (396)
Q Consensus 245 ~~~~~l~f~---vTl~vFP~i~~~~~~~~~~~~w~~~~~~~~fn~gD~iGR~l~~~~~~~~~~~~~-l~i~sl~R~~fip 320 (396)
.+..++... ......|-...+ ....++...-.....+.++..+|+....... ++.++|. .... .-.+...
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~--~~~~~~i 254 (352)
T cd06174 181 ALAFFLLSFGYYGLLTYLPLYLQE---VLGLSAAEAGLLLSLFGLGGILGALLGGLLS-DRLGRRRLLLLI--GLLLAAL 254 (352)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhHHHHH--HHHHHHH
Confidence 222222111 112222222211 1011233344567788899999998865421 1112232 2211 1111211
Q ss_pred HHHhhcccCCchHHHHHHHHHhhccccccceeeeccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 016029 321 AFYFTAKYGDQGWMIMLTSFLGLSNGYLTVCVLTAAPKGYKGPEQNALGNLLVLFLLGGIFAGATLDWLW 390 (396)
Q Consensus 321 lfll~~~~~~d~~~~i~~~lfgltnGyl~t~~mi~~p~~v~~~e~e~ag~~~~~~l~~Gl~~Gs~~s~~~ 390 (396)
..++....++.+...+..++.|+..|...+....+..+..++++|..+-.+....-..|-.+|+.++-.+
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l 324 (352)
T cd06174 255 GLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLL 324 (352)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222222233455566789999999988888888888888888998888888888888888887776444
No 27
>PRK03545 putative arabinose transporter; Provisional
Probab=97.86 E-value=0.0033 Score=62.51 Aligned_cols=96 Identities=18% Similarity=0.131 Sum_probs=58.5
Q ss_pred hhHHHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHHHHHhhhhhhhccchhhcc
Q 016029 42 YQPFALITLAILAYHEAKIDTRRRIIFGYILFFASSLLVLVLDLATSGKGGLGTFIGICVISGAFGVADANVQGGMVGDL 121 (396)
Q Consensus 42 ~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~i~~~~~~~i~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la 121 (396)
+.....+.......+.+|++.|+-+..+..+..+.++... ..+ .++..++.-++.|.+.+.......++.
T Consensus 53 ~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~---~~~-------~~~~l~~~r~~~G~~~~~~~~~~~~~i 122 (390)
T PRK03545 53 YAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSA---LAW-------NFTVLLISRIGIAFAHAIFWSITASLA 122 (390)
T ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHH---Hhc-------cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4434444445556778999888777777666666554432 221 155555555677888777777666765
Q ss_pred cc-CCHH----HHHHHHhhhhhHhHHHHHHH
Q 016029 122 SF-MTSE----LIQSFLAGLAASGAITSALR 147 (396)
Q Consensus 122 ~~-~p~~----~~~a~~~G~g~aGi~~s~~~ 147 (396)
+. .|++ .++.+..|++++.+++..+.
T Consensus 123 ~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~ 153 (390)
T PRK03545 123 IRVAPAGKKAQALSLLATGTALAMVLGLPLG 153 (390)
T ss_pred HHhCChhhhhhHHHHHHHHHHHHHHHHhhHH
Confidence 54 4543 34556677777777765544
No 28
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=97.82 E-value=0.0033 Score=62.89 Aligned_cols=107 Identities=12% Similarity=0.131 Sum_probs=58.0
Q ss_pred HHHHHHHHHhhhhhhhhccccccccCCcchHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHhhccccccceeeeccC
Q 016029 278 VVLIAMYNVGDLIGRYIPLLKFFKLESRKYITAATLSRFLLVPAFYFTAKYGDQGWMIMLTSFLGLSNGYLTVCVLTAAP 357 (396)
Q Consensus 278 ~~~~~~fn~gD~iGR~l~~~~~~~~~~~~~l~i~sl~R~~fiplfll~~~~~~d~~~~i~~~lfgltnGyl~t~~mi~~p 357 (396)
-.....+.++..+|+.+.....-+ ..++.+....+.-.+.. +++....++.+......+++|+..|..........-
T Consensus 255 g~~~~~~~~~~iig~~~~~~l~~r-~~~~~l~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~ 331 (394)
T PRK10213 255 TLVLLSFGIASFVGTSLSSFILKR-SVKLALAGAPLVLAVSA--LVLTLWGSDKIVATGVAIIWGLTFALVPVGWSTWIT 331 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-cchhHHHHHHHHHHHHH--HHHHHHhhhHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 345777889999999877553112 12222222211111110 111111234444555688889888777665544434
Q ss_pred CCCCchhhhhhhhHHHHHHHHHHHHHHHHHH
Q 016029 358 KGYKGPEQNALGNLLVLFLLGGIFAGATLDW 388 (396)
Q Consensus 358 ~~v~~~e~e~ag~~~~~~l~~Gl~~Gs~~s~ 388 (396)
+.++ ++++.++........+|..+|+.++=
T Consensus 332 ~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G 361 (394)
T PRK10213 332 RSLA-DQAEKAGSIQVAVIQLANTCGAAIGG 361 (394)
T ss_pred HHCc-ccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4454 45556666666666788888876653
No 29
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=97.81 E-value=0.0055 Score=62.42 Aligned_cols=94 Identities=13% Similarity=0.005 Sum_probs=50.2
Q ss_pred hhHHHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHHHHHhhhhhhhccchhhc-
Q 016029 42 YQPFALITLAILAYHEAKIDTRRRIIFGYILFFASSLLVLVLDLATSGKGGLGTFIGICVISGAFGVADANVQGGMVGD- 120 (396)
Q Consensus 42 ~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~i~~~~~~~i~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~l- 120 (396)
+.+...+.+.+...+.+|+..+.=+..+.++..+..+.....+... ..++..++.-++.|++.+.........
T Consensus 72 ~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~------~~~~~~~~~~~l~gi~~g~~~~~~~~~~ 145 (452)
T PRK11273 72 ISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWAT------SSIAVMFVLLFLCGWFQGMGWPPCGRTM 145 (452)
T ss_pred HHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhccc------ccHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 4444445566666778898776655555555555554433222110 114444444556677777665544444
Q ss_pred cccCCHHHH----HHHHhhhhhHhH
Q 016029 121 LSFMTSELI----QSFLAGLAASGA 141 (396)
Q Consensus 121 a~~~p~~~~----~a~~~G~g~aGi 141 (396)
+..+|++.. +.+..|.+++|.
T Consensus 146 ~~~~~~~~r~~~~~~~~~~~~~g~~ 170 (452)
T PRK11273 146 VHWWSQKERGGIVSVWNCAHNVGGG 170 (452)
T ss_pred HHhCChHHHHHHHHHHHHHHHhhhh
Confidence 344676643 334466666653
No 30
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=97.80 E-value=0.0034 Score=63.99 Aligned_cols=110 Identities=12% Similarity=-0.041 Sum_probs=64.1
Q ss_pred HHHHHHHHHhhhhhhhhccccccccCCcchHHHHHHHHHHHHHHHHhh-cc-cC-CchHHHHHHHHHhhccccccceeee
Q 016029 278 VVLIAMYNVGDLIGRYIPLLKFFKLESRKYITAATLSRFLLVPAFYFT-AK-YG-DQGWMIMLTSFLGLSNGYLTVCVLT 354 (396)
Q Consensus 278 ~~~~~~fn~gD~iGR~l~~~~~~~~~~~~~l~i~sl~R~~fiplfll~-~~-~~-~d~~~~i~~~lfgltnGyl~t~~mi 354 (396)
-.......++..+|+.+..... ++.++|.+......=.. +-.+++. .. .. +.+.....+++.|+..|......+.
T Consensus 294 g~~~~~~~~~~~~~~~~~g~l~-~r~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~ 371 (485)
T TIGR00711 294 GLHILPVGLAPMLSSPIAGRMG-DKIDPRKLVTIGLILYA-VGFYWRAFTFTPDTPFLAIALPQFIRGFGMGCFFMPLTT 371 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-hhcCcHHHHHHHHHHHH-HHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667888888887765531 22233443322221111 1111121 11 12 2333444578888888877655555
Q ss_pred ccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 016029 355 AAPKGYKGPEQNALGNLLVLFLLGGIFAGATLDWL 389 (396)
Q Consensus 355 ~~p~~v~~~e~e~ag~~~~~~l~~Gl~~Gs~~s~~ 389 (396)
...+.++++++..+..+..+.-..|-.+|..+.=.
T Consensus 372 ~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ 406 (485)
T TIGR00711 372 IALSGLPPHKIARGSSLSNFTRQLGGSIGTALITT 406 (485)
T ss_pred HHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677788888888888888888888888765443
No 31
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=97.77 E-value=0.0054 Score=63.27 Aligned_cols=97 Identities=9% Similarity=-0.022 Sum_probs=55.0
Q ss_pred HHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHHHHHhhhhhhhccchhhcccc-CCHH
Q 016029 49 TLAILAYHEAKIDTRRRIIFGYILFFASSLLVLVLDLATSGKGGLGTFIGICVISGAFGVADANVQGGMVGDLSF-MTSE 127 (396)
Q Consensus 49 ~~~~~~~~~~~~~~~~Ri~~~~~~~~i~~~~~~~i~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la~~-~p~~ 127 (396)
+.++...+.+|+..+.-+..+..++.+.+++....+... .-+...+...++.=++.|++.|....+...+.+. +|++
T Consensus 73 g~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~a~~~~~~--~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~ 150 (490)
T PRK10642 73 GGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLIPSYA--TIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDR 150 (490)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhcccHH--HHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCC
Confidence 445555778898888777777777777766544222110 0000011123444567788888777777777554 5543
Q ss_pred ----HHHHHHhhhhhHhHHHHHHH
Q 016029 128 ----LIQSFLAGLAASGAITSALR 147 (396)
Q Consensus 128 ----~~~a~~~G~g~aGi~~s~~~ 147 (396)
.......|..++.+++..+.
T Consensus 151 ~Rg~~~~~~~~~~~~G~~lg~~~~ 174 (490)
T PRK10642 151 KRGFMGSWLDFGSIAGFVLGAGVV 174 (490)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556555555555444
No 32
>PRK12382 putative transporter; Provisional
Probab=97.75 E-value=0.0058 Score=60.65 Aligned_cols=106 Identities=7% Similarity=-0.099 Sum_probs=59.0
Q ss_pred HHHHHHhhhhhhhhccccccccCCcchHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHhhccccccceeeeccCCCC
Q 016029 281 IAMYNVGDLIGRYIPLLKFFKLESRKYITAATLSRFLLVPAFYFTAKYGDQGWMIMLTSFLGLSNGYLTVCVLTAAPKGY 360 (396)
Q Consensus 281 ~~~fn~gD~iGR~l~~~~~~~~~~~~~l~i~sl~R~~fiplfll~~~~~~d~~~~i~~~lfgltnGyl~t~~mi~~p~~v 360 (396)
...+.++..+|+...+...-+..++|.+.....+-.+...++. ..++.+...+..+++|+..|-..........+..
T Consensus 255 ~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~ 331 (392)
T PRK12382 255 LTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLW---LAPTAWVALAGAALTGAGCSLIFPALGVEVVKRV 331 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHH---HcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 4567788888877654421122233444333333322222221 1234444445677888887755444444445556
Q ss_pred CchhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 016029 361 KGPEQNALGNLLVLFLLGGIFAGATLDWL 389 (396)
Q Consensus 361 ~~~e~e~ag~~~~~~l~~Gl~~Gs~~s~~ 389 (396)
++++|..+-.+.......|-.+|..++=.
T Consensus 332 ~~~~~g~~~g~~~~~~~~g~~ig~~~~g~ 360 (392)
T PRK12382 332 PSQVRGTALGGYAAFQDIAYGVSGPLAGM 360 (392)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788777777777777787777765543
No 33
>PRK03699 putative transporter; Provisional
Probab=97.75 E-value=0.0032 Score=62.81 Aligned_cols=104 Identities=13% Similarity=0.130 Sum_probs=53.7
Q ss_pred HHHHHHHHhhhhhhhhccccccccCCcchHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHhhccccccceeeeccCC
Q 016029 279 VLIAMYNVGDLIGRYIPLLKFFKLESRKYITAATLSRFLLVPAFYFTAKYGDQGWMIMLTSFLGLSNGYLTVCVLTAAPK 358 (396)
Q Consensus 279 ~~~~~fn~gD~iGR~l~~~~~~~~~~~~~l~i~sl~R~~fiplfll~~~~~~d~~~~i~~~lfgltnGyl~t~~mi~~p~ 358 (396)
....++.++..+||.+.....=+.+++|.+.....+..+.+.++..+ ++.++..+..+++|+..|-..+..+..+++
T Consensus 245 ~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~ 321 (394)
T PRK03699 245 NLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNT---DDPSHLLYAILGLGFFSSAIYTTIITLGSQ 321 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHc---CCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788889999887653212233344443444344333333222 344455556778888776555555555565
Q ss_pred CCCchhhhhhhhHHHHHHHHHHHHHHHH
Q 016029 359 GYKGPEQNALGNLLVLFLLGGIFAGATL 386 (396)
Q Consensus 359 ~v~~~e~e~ag~~~~~~l~~Gl~~Gs~~ 386 (396)
..+++..+..|.+. .+-.+|-.+|..+
T Consensus 322 ~~~~~~~~~~g~~~-~~~~~g~~i~p~~ 348 (394)
T PRK03699 322 QTKVASPKLVNFIL-TCGTIGTMLTFVV 348 (394)
T ss_pred HccCCCHHHHHHHH-HhhhHHHHHHHHH
Confidence 55433233334333 3344566555544
No 34
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=97.70 E-value=0.012 Score=60.92 Aligned_cols=107 Identities=12% Similarity=0.021 Sum_probs=60.8
Q ss_pred eehhhhHHHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHHHHHhhhhhhhccch
Q 016029 38 LTLVYQPFALITLAILAYHEAKIDTRRRIIFGYILFFASSLLVLVLDLATSGKGGLGTFIGICVISGAFGVADANVQGGM 117 (396)
Q Consensus 38 ~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~i~~~~~~~i~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~ 117 (396)
+...+.+...++.++...+.+|+..+.-+..+.++..+..++.. ...+.. ....++..++.-++.|++.|......
T Consensus 61 ~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~---~~~~~~-~~~~~~~~~~~r~l~G~~~g~~~~~~ 136 (502)
T TIGR00887 61 VNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASG---LSPGSS-PKSVMATLCFWRFWLGVGIGGDYPLS 136 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHH---HccCcc-cchHHHHHHHHHHHHHHHHhhhhHHH
Confidence 33445555556667777788887666555556666655544332 211111 11224555666678888888887777
Q ss_pred hhccc-cCCHHHH----HHHHhhhhhHhHHHHHHHH
Q 016029 118 VGDLS-FMTSELI----QSFLAGLAASGAITSALRL 148 (396)
Q Consensus 118 ~~la~-~~p~~~~----~a~~~G~g~aGi~~s~~~i 148 (396)
..+.+ .+|++.- .....++.++.+++..+..
T Consensus 137 ~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~ 172 (502)
T TIGR00887 137 AIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVAL 172 (502)
T ss_pred HHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77755 5676653 2233445555555555444
No 35
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=97.64 E-value=0.01 Score=58.05 Aligned_cols=58 Identities=12% Similarity=-0.063 Sum_probs=32.7
Q ss_pred CchHHHHHHHHHhhccccccceeeeccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHH
Q 016029 330 DQGWMIMLTSFLGLSNGYLTVCVLTAAPKGYKGPEQNALGNLLVLFLLGGIFAGATLDW 388 (396)
Q Consensus 330 ~d~~~~i~~~lfgltnGyl~t~~mi~~p~~v~~~e~e~ag~~~~~~l~~Gl~~Gs~~s~ 388 (396)
+.+...+..++.|+..|......+.+..+..+ +++..+..+......+|..+|..++=
T Consensus 287 ~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~g~~~~g 344 (375)
T TIGR00899 287 SLWALLMLQLLNAIFIGILAGIGMLYFQDLMP-GRAGAATTLYTNTGRVGWIIAGSVGG 344 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445677788777666555555444433 44445555555555577777765543
No 36
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=97.60 E-value=0.038 Score=55.48 Aligned_cols=109 Identities=15% Similarity=0.088 Sum_probs=53.3
Q ss_pred HHHHHHHhhhhhhhhccccccccCCcchHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHhhccccccceeeeccCCC
Q 016029 280 LIAMYNVGDLIGRYIPLLKFFKLESRKYITAATLSRFLLVPAFYFTAKYGDQGWMIMLTSFLGLSNGYLTVCVLTAAPKG 359 (396)
Q Consensus 280 ~~~~fn~gD~iGR~l~~~~~~~~~~~~~l~i~sl~R~~fiplfll~~~~~~d~~~~i~~~lfgltnGyl~t~~mi~~p~~ 359 (396)
......++-.+|..+.....-+. ++|.++.....=.+ +....+.-..++.+...+.+++.|+..|-.........++.
T Consensus 262 ~~~~~~i~~ii~~~~~~~l~~r~-g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 339 (437)
T TIGR00792 262 MGSIAIVAGLIGVLLFPRLVKKF-GRKILFAGGILLMV-LGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWALVADT 339 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHH-HHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34456788888776654321122 23333333221111 11111111112334445567777887776665554444444
Q ss_pred CCc-------hhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 016029 360 YKG-------PEQNALGNLLVLFLLGGIFAGATLDWLW 390 (396)
Q Consensus 360 v~~-------~e~e~ag~~~~~~l~~Gl~~Gs~~s~~~ 390 (396)
++. +.+..+..+.+++..+|..+|..++-.+
T Consensus 340 ~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~l 377 (437)
T TIGR00792 340 VDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLI 377 (437)
T ss_pred hhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 432 2234445666677778887777665444
No 37
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=97.59 E-value=0.011 Score=58.83 Aligned_cols=88 Identities=11% Similarity=0.080 Sum_probs=51.8
Q ss_pred ehhhhHHHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHHHHHhhhhhhhccchh
Q 016029 39 TLVYQPFALITLAILAYHEAKIDTRRRIIFGYILFFASSLLVLVLDLATSGKGGLGTFIGICVISGAFGVADANVQGGMV 118 (396)
Q Consensus 39 ~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~i~~~~~~~i~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~ 118 (396)
..++.....+.+.....+.+|...|+-+..+..+..+..+......... ++ ....++..++.-++.|++.+.......
T Consensus 57 ~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~l~~~r~l~G~~~~~~~~~~~ 134 (399)
T PRK05122 57 ISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLA-AW-PVLSLLLLLLGRLLLGIGESLAGTGSI 134 (399)
T ss_pred HHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhh-cc-chhHHHHHHHHHHHHHhhHHhhcchHH
Confidence 3445566666667777888998887777777766655443322222211 11 112244455556788888888877776
Q ss_pred hc-cccCCHHH
Q 016029 119 GD-LSFMTSEL 128 (396)
Q Consensus 119 ~l-a~~~p~~~ 128 (396)
.. ....|++.
T Consensus 135 ~~~~~~~~~~~ 145 (399)
T PRK05122 135 LWGIGRVGALH 145 (399)
T ss_pred HHHHhhcChhh
Confidence 65 34555443
No 38
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=97.54 E-value=0.0039 Score=63.82 Aligned_cols=104 Identities=10% Similarity=-0.036 Sum_probs=60.2
Q ss_pred ehhhhHHHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHHHHHhhhhhhhccchh
Q 016029 39 TLVYQPFALITLAILAYHEAKIDTRRRIIFGYILFFASSLLVLVLDLATSGKGGLGTFIGICVISGAFGVADANVQGGMV 118 (396)
Q Consensus 39 ~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~i~~~~~~~i~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~ 118 (396)
...|.....+.+.....+.+|.+.+.-+..+.++..+.++.+..+.... ...++..++.-++.|++.|..-....
T Consensus 70 ~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~r~l~G~~~~~~~~~~~ 144 (467)
T PRK09556 70 GLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSG-----SVSLGLMIALWALSGFFQSTGGPCSY 144 (467)
T ss_pred HHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhcc-----cchHHHHHHHHHHHHHHHhccchHHH
Confidence 3345555556666677788998887766666666655555444322111 11255555555677777776666666
Q ss_pred hccc-cCCHHH----HHHHHhhhhhHhHHHHHHH
Q 016029 119 GDLS-FMTSEL----IQSFLAGLAASGAITSALR 147 (396)
Q Consensus 119 ~la~-~~p~~~----~~a~~~G~g~aGi~~s~~~ 147 (396)
.+.+ .+|++. ++.+..|.+++++++.++.
T Consensus 145 ~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~ 178 (467)
T PRK09556 145 STITRWTPRRKRGRFLGFWNISHNLGGAGAGGVA 178 (467)
T ss_pred HHHHHHcCccceeeeEEeeecccchhhhHHHHHH
Confidence 6644 466542 3444556666666665543
No 39
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=97.53 E-value=0.005 Score=62.02 Aligned_cols=97 Identities=19% Similarity=0.131 Sum_probs=53.9
Q ss_pred hhHHHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHHHHHhhhhhhhccchhhcc
Q 016029 42 YQPFALITLAILAYHEAKIDTRRRIIFGYILFFASSLLVLVLDLATSGKGGLGTFIGICVISGAFGVADANVQGGMVGDL 121 (396)
Q Consensus 42 ~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~i~~~~~~~i~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la 121 (396)
+.....+..+....+.+|+..|.=+..+..+..+..+... ..++ ++..++.-++.|++.+....+...+.
T Consensus 52 ~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~---~~~~-------~~~l~~~r~l~G~~~~~~~~~~~~~~ 121 (412)
T TIGR02332 52 FYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATM---FATG-------PESLYLLRILVGIAEAGFLPGILLYL 121 (412)
T ss_pred HHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHH---HhcC-------HHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3333334445555667787766555555555555444432 2211 33333444567777777666666654
Q ss_pred -ccCCHHH----HHHHHhhhhhHhHHHHHHHH
Q 016029 122 -SFMTSEL----IQSFLAGLAASGAITSALRL 148 (396)
Q Consensus 122 -~~~p~~~----~~a~~~G~g~aGi~~s~~~i 148 (396)
..+|++. +..+..|.++++++...+.-
T Consensus 122 ~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~ 153 (412)
T TIGR02332 122 TFWFPAYFRARANALFMIAMPVTMALGLILSG 153 (412)
T ss_pred HHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467643 45566777777777666543
No 40
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=97.52 E-value=0.018 Score=59.41 Aligned_cols=61 Identities=18% Similarity=0.048 Sum_probs=45.9
Q ss_pred CCchHHHHHHHHHhhccccccceeeeccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 016029 329 GDQGWMIMLTSFLGLSNGYLTVCVLTAAPKGYKGPEQNALGNLLVLFLLGGIFAGATLDWL 389 (396)
Q Consensus 329 ~~d~~~~i~~~lfgltnGyl~t~~mi~~p~~v~~~e~e~ag~~~~~~l~~Gl~~Gs~~s~~ 389 (396)
++.+.....+++.|+..|..........-+.++++++..++.+..+.-.+|-.+|..++=.
T Consensus 349 ~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~ 409 (495)
T PRK14995 349 TQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGL 409 (495)
T ss_pred CchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445568888999887766555555667888899999999999999998888766543
No 41
>PRK10133 L-fucose transporter; Provisional
Probab=97.51 E-value=0.011 Score=60.32 Aligned_cols=101 Identities=10% Similarity=-0.060 Sum_probs=65.5
Q ss_pred hhhhHHHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHHHHHhhhhhhhccchhh
Q 016029 40 LVYQPFALITLAILAYHEAKIDTRRRIIFGYILFFASSLLVLVLDLATSGKGGLGTFIGICVISGAFGVADANVQGGMVG 119 (396)
Q Consensus 40 ~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~i~~~~~~~i~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~ 119 (396)
..+.....+.+.....+.+|+..|.=+..++.+..+..++.......+ .++..++.-++.|.+.|..+.....
T Consensus 68 ~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a~-------~~~~ll~~r~l~G~g~g~~~~~~~~ 140 (438)
T PRK10133 68 SAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIM-------NYTLFLVGLFIIAAGLGCLETAANP 140 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 335555556666677788898888777778777776665432111211 2666677778899999999998888
Q ss_pred ccccCCHHHHH-----HHHhhhhhHhHHHHHHH
Q 016029 120 DLSFMTSELIQ-----SFLAGLAASGAITSALR 147 (396)
Q Consensus 120 la~~~p~~~~~-----a~~~G~g~aGi~~s~~~ 147 (396)
+....+++..+ ....+.++++.++.++-
T Consensus 141 ~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g 173 (438)
T PRK10133 141 FVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFG 173 (438)
T ss_pred HHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 86666544333 44566666666665553
No 42
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=97.49 E-value=0.014 Score=58.19 Aligned_cols=105 Identities=8% Similarity=-0.049 Sum_probs=52.3
Q ss_pred HHHHHhhhhhhhhccccccccCCcchHHHHHHHHHHHHHHHHhhc-ccC-CchHHHHHHHHHhhccccccceeeeccCCC
Q 016029 282 AMYNVGDLIGRYIPLLKFFKLESRKYITAATLSRFLLVPAFYFTA-KYG-DQGWMIMLTSFLGLSNGYLTVCVLTAAPKG 359 (396)
Q Consensus 282 ~~fn~gD~iGR~l~~~~~~~~~~~~~l~i~sl~R~~fiplfll~~-~~~-~d~~~~i~~~lfgltnGyl~t~~mi~~p~~ 359 (396)
....++..+|+.+.....-+..++|.+.+..+.-.+-.-++.... ..+ +.++..+.++++|+..|...+..+... ..
T Consensus 258 ~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~-~~ 336 (406)
T PRK15402 258 VPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYAFGIGLANAGLYRLT-LF 336 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHhhhHHHHH-hh
Confidence 345567788887665421122223333222222111111111111 222 334455567888888877655443332 23
Q ss_pred CCchhhhhhhhHHHHHHHHHHHHHHHHH
Q 016029 360 YKGPEQNALGNLLVLFLLGGIFAGATLD 387 (396)
Q Consensus 360 v~~~e~e~ag~~~~~~l~~Gl~~Gs~~s 387 (396)
.++++|..+..++++.-..|-.+|+.+.
T Consensus 337 ~~~~~~g~~~~~~~~~~~~~~~~g~~~~ 364 (406)
T PRK15402 337 SSDVSKGTVSAAMGMLSMLIFTVGIELS 364 (406)
T ss_pred hccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777777777767766666543
No 43
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=97.48 E-value=0.014 Score=57.26 Aligned_cols=95 Identities=13% Similarity=0.076 Sum_probs=51.9
Q ss_pred hhHHHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHHHHHhhhhhhhccchhhcc
Q 016029 42 YQPFALITLAILAYHEAKIDTRRRIIFGYILFFASSLLVLVLDLATSGKGGLGTFIGICVISGAFGVADANVQGGMVGDL 121 (396)
Q Consensus 42 ~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~i~~~~~~~i~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la 121 (396)
+.....++..+...+.+|.+.+.-+..+..+..+..+... ..+ .++..++..++.|++.+.......++.
T Consensus 35 ~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~---~~~-------~~~~~~~~~~l~g~~~~~~~~~~~~~~ 104 (377)
T PRK11102 35 YILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACA---LAQ-------TIDQLIYMRFLHGLAAAAASVVINALM 104 (377)
T ss_pred HHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHH---HHc-------cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555666666778888765444455555555544432 211 134444555677777777666665654
Q ss_pred c-cCCHHH----HHHHHhhhhhHhHHHHHH
Q 016029 122 S-FMTSEL----IQSFLAGLAASGAITSAL 146 (396)
Q Consensus 122 ~-~~p~~~----~~a~~~G~g~aGi~~s~~ 146 (396)
. .+|++. ++....+.++++++...+
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 134 (377)
T PRK11102 105 RDMFPKEEFSRMMSFVTLVMTIAPLLAPII 134 (377)
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 356543 233345556666655544
No 44
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=97.46 E-value=0.0073 Score=61.20 Aligned_cols=98 Identities=13% Similarity=0.006 Sum_probs=49.7
Q ss_pred hhHHHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHHHHHhhhhhhhccchhhc-
Q 016029 42 YQPFALITLAILAYHEAKIDTRRRIIFGYILFFASSLLVLVLDLATSGKGGLGTFIGICVISGAFGVADANVQGGMVGD- 120 (396)
Q Consensus 42 ~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~i~~~~~~~i~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~l- 120 (396)
+.....+.......+.+|.+.+.-+..+..+..+..+.....+.. ...++...+..++.|++.+...+.....
T Consensus 70 ~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~~~l~g~~~g~~~~~~~~~i 143 (438)
T TIGR00712 70 ISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWA------TSSIAIMFVLLFLNGWFQGMGWPPCGRTM 143 (438)
T ss_pred HHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccc------cchHHHHHHHHHHHHHHhhcchHHHHHHH
Confidence 444444555556677888876544445555555544433222211 0113333344456666666555433333
Q ss_pred cccCCHHH----HHHHHhhhhhHhHHHHH
Q 016029 121 LSFMTSEL----IQSFLAGLAASGAITSA 145 (396)
Q Consensus 121 a~~~p~~~----~~a~~~G~g~aGi~~s~ 145 (396)
+..+|++. ++....+.+++|.+...
T Consensus 144 ~~~~~~~~rg~~~~~~~~~~~~g~~~~~~ 172 (438)
T TIGR00712 144 VHWWSQSERGTIVSIWNCAHNIGGGIPPL 172 (438)
T ss_pred HHhcCcccchhHHHHHHHHHHhHhHHHHH
Confidence 34466543 34455677777766544
No 45
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=97.46 E-value=0.013 Score=66.70 Aligned_cols=307 Identities=12% Similarity=0.001 Sum_probs=148.0
Q ss_pred hhhHHHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHHHHHhhhhhhhccchhhc
Q 016029 41 VYQPFALITLAILAYHEAKIDTRRRIIFGYILFFASSLLVLVLDLATSGKGGLGTFIGICVISGAFGVADANVQGGMVGD 120 (396)
Q Consensus 41 ~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~i~~~~~~~i~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~l 120 (396)
++.++..+.+.+...+.+|.+.+.-+........+...+.. ..... ..++..++..++.|++++.......++
T Consensus 60 ~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~-~~~~~------~s~~~l~~~~~l~gi~~a~~~p~~~a~ 132 (1140)
T PRK06814 60 VFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAI-YGFHL------NSVPLLFAALFLMGIHSALFGPIKYSI 132 (1140)
T ss_pred HHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHH-HHHHH------hhHHHHHHHHHHHHHHHHhhchHHHHh
Confidence 45556666666666778887665422121111111111111 11110 126667778888999999999988888
Q ss_pred c-ccCCHH----HHHHHHhhhhhHhHHHHHHHHHHHhhccCCccccchhhhHHhHHHHHHHHHHHHHHHHHcCCChHHHH
Q 016029 121 L-SFMTSE----LIQSFLAGLAASGAITSALRLITKAAFENSKDGLRKGALLFFAISSFFEFLCVILYAFVFPKIPIVKY 195 (396)
Q Consensus 121 a-~~~p~~----~~~a~~~G~g~aGi~~s~~~ii~~~~~~~~~~~~~~~a~~yF~ia~~~~~~~~~~~~~~l~k~~~~~~ 195 (396)
. ..+|++ -++..+.+.+++.+++.++--...... + ....|..+.+..++++++.. .+++.+-
T Consensus 133 l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~-----~----~~~~~~~~~~~~~~~~~~~~-~~~~~~~--- 199 (1140)
T PRK06814 133 LPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISG-----N----FVILVALLMGIAVLGWLASL-FIPKTGN--- 199 (1140)
T ss_pred hHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhcc-----c----cHHHHHHHHHHHHHHHHHHh-hCCCCCC---
Confidence 5 445654 356666888888888766665443321 1 11223333333333333333 2322110
Q ss_pred HHHhhhccCCccccchhhhccCccCcccccccccccccHHHHH--HHHHHHHHHHHH---HhhhhccccCceEeeccCCC
Q 016029 196 YRNKAASEGSKTVAADLAAGGIQMLSKEEVEKCSERFSNKQLL--LQNIDYAIDMFV---IYTLTLSIFPGFLSEDTGSH 270 (396)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--k~i~~~~~~~~l---~f~vTl~vFP~i~~~~~~~~ 270 (396)
++++.+ .+ . +..++ ....++.+. |..|...+..++ .+...+..+|....+. .+
T Consensus 200 -----~~~~~~---~~-------~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~--~g 257 (1140)
T PRK06814 200 -----AAPDLK---ID-------R-NIIRS----TITLLKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKET--LG 257 (1140)
T ss_pred -----CCCCCe---ec-------c-chHHH----HHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHH--cC
Confidence 000000 00 0 00000 001112222 123333332222 2223334556554221 11
Q ss_pred CCCchHHHHHHHHHHHhhhhhhhhccccccccCCcchHHHHHHHH-HHHHHHHHh---------------hcc-cCCchH
Q 016029 271 SLGGWYAVVLIAMYNVGDLIGRYIPLLKFFKLESRKYITAATLSR-FLLVPAFYF---------------TAK-YGDQGW 333 (396)
Q Consensus 271 ~~~~w~~~~~~~~fn~gD~iGR~l~~~~~~~~~~~~~l~i~sl~R-~~fiplfll---------------~~~-~~~d~~ 333 (396)
. +....-.....+.+|-.+|..+.+...-+....+.+....++= +..+.+.+. +-. ..+.+.
T Consensus 258 ~-~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (1140)
T PRK06814 258 G-DENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWR 336 (1140)
T ss_pred C-chHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccHH
Confidence 1 1222334567777888888887754210111122222211111 111111110 000 134555
Q ss_pred HHHHHHHHhhccccccceeeeccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 016029 334 MIMLTSFLGLSNGYLTVCVLTAAPKGYKGPEQNALGNLLVLFLLGGIFAGATLDWLW 390 (396)
Q Consensus 334 ~~i~~~lfgltnGyl~t~~mi~~p~~v~~~e~e~ag~~~~~~l~~Gl~~Gs~~s~~~ 390 (396)
.++..+++|+..|..........-+..+++++..+..+.++...+|..+|+.+.-.+
T Consensus 337 ~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l 393 (1140)
T PRK06814 337 ILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALL 393 (1140)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHH
Confidence 566678888888877766555556677888888888888888888888887765443
No 46
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=97.44 E-value=0.028 Score=56.18 Aligned_cols=135 Identities=13% Similarity=0.008 Sum_probs=72.9
Q ss_pred eeehhhhhhhhhhHhhchHHHHhhhc--CCCCCcceeehhhhHHHHHHHHHHHHhhccC-----CcchhhH-HHHHHHHH
Q 016029 4 CWLLGNGCLFSWNSMLTVVDYYVFLF--PQYHPSRILTLVYQPFALITLAILAYHEAKI-----DTRRRII-FGYILFFA 75 (396)
Q Consensus 4 F~~lGi~~LlpwN~~ita~~Yf~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-----~~~~Ri~-~~~~~~~i 75 (396)
|+.+++..=+|.....++.+.|-+.- +..+.. .+.....+ .+...+...+.+|. ..++|+. .+..+..+
T Consensus 4 ~~~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~ig-~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l 80 (402)
T PRK11902 4 MLLLGFASGLPLALTSGTLQAWMTVEGLDIQTIG-FFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAA 80 (402)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHH
Confidence 67788888999999999988776542 211211 11121221 34455555667777 3344443 44444544
Q ss_pred HHHHHHHhhhccCCCCCchHHHHHHHHHHHHhhhhhhhccchhhcccc-CCHH----HHHHHHhhhhhHhHHHHHHHH
Q 016029 76 SSLLVLVLDLATSGKGGLGTFIGICVISGAFGVADANVQGGMVGDLSF-MTSE----LIQSFLAGLAASGAITSALRL 148 (396)
Q Consensus 76 ~~~~~~~i~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la~~-~p~~----~~~a~~~G~g~aGi~~s~~~i 148 (396)
.+..+...+. ...++...+..++.+.+.+......-+++.. .|+| +....+.|++++.+++..+-.
T Consensus 81 ~~~~l~~~~~-------~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~ 151 (402)
T PRK11902 81 SIAAMAFCPP-------HAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLAL 151 (402)
T ss_pred HHHHHHhcCc-------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHH
Confidence 4444332221 1123333344344566666555555555433 4544 455667888888888766543
No 47
>PRK10504 putative transporter; Provisional
Probab=97.42 E-value=0.018 Score=58.70 Aligned_cols=53 Identities=15% Similarity=0.101 Sum_probs=39.2
Q ss_pred HHHHHHhhccccccceeeeccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHH
Q 016029 336 MLTSFLGLSNGYLTVCVLTAAPKGYKGPEQNALGNLLVLFLLGGIFAGATLDW 388 (396)
Q Consensus 336 i~~~lfgltnGyl~t~~mi~~p~~v~~~e~e~ag~~~~~~l~~Gl~~Gs~~s~ 388 (396)
+..++.|+..|...+......++.++++++..+..+.++.-.+|..+|..+.-
T Consensus 358 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g 410 (471)
T PRK10504 358 FVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAG 410 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777666666666677788888888888888888888888766643
No 48
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=97.41 E-value=0.022 Score=56.54 Aligned_cols=57 Identities=16% Similarity=0.050 Sum_probs=36.5
Q ss_pred CchHHHHHHHHHhhccccccceeeeccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHH
Q 016029 330 DQGWMIMLTSFLGLSNGYLTVCVLTAAPKGYKGPEQNALGNLLVLFLLGGIFAGATLD 387 (396)
Q Consensus 330 ~d~~~~i~~~lfgltnGyl~t~~mi~~p~~v~~~e~e~ag~~~~~~l~~Gl~~Gs~~s 387 (396)
+.+.......++++..|-.....+.+..+..+ +++..++.+.+.....|-.+|+.++
T Consensus 298 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~ 354 (394)
T PRK11652 298 NVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLS 354 (394)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556777888877766666655555443 4566677777666677777777654
No 49
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=97.41 E-value=0.018 Score=59.29 Aligned_cols=77 Identities=9% Similarity=-0.003 Sum_probs=37.2
Q ss_pred hhHHHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHHHHHhhhhhhhccchhhcc
Q 016029 42 YQPFALITLAILAYHEAKIDTRRRIIFGYILFFASSLLVLVLDLATSGKGGLGTFIGICVISGAFGVADANVQGGMVGDL 121 (396)
Q Consensus 42 ~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~i~~~~~~~i~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la 121 (396)
+.....+.+++...+.+|+..+..+..+.++..+.+++.. ... + ++..++.-++.|++.+.......-++
T Consensus 80 ~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~---~~~----s---~~~l~~~r~l~G~~~~~~~~~~~~i~ 149 (476)
T PLN00028 80 SVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMS---LVS----S---ATGFIAVRFFIGFSLATFVSCQYWMS 149 (476)
T ss_pred HHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHH---Hhc----C---HHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3333444556666777888776655555555544443332 221 1 22233333455655543332222245
Q ss_pred ccCCHHH
Q 016029 122 SFMTSEL 128 (396)
Q Consensus 122 ~~~p~~~ 128 (396)
..+|++.
T Consensus 150 ~~~~~~~ 156 (476)
T PLN00028 150 TMFNGKI 156 (476)
T ss_pred HhcChhh
Confidence 5577653
No 50
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=97.37 E-value=0.026 Score=56.05 Aligned_cols=108 Identities=14% Similarity=-0.014 Sum_probs=52.0
Q ss_pred HHHHHHHHhhhhhhhhccccccccCCcchHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHhhccccccceeeeccCC
Q 016029 279 VLIAMYNVGDLIGRYIPLLKFFKLESRKYITAATLSRFLLVPAFYFTAKYGDQGWMIMLTSFLGLSNGYLTVCVLTAAPK 358 (396)
Q Consensus 279 ~~~~~fn~gD~iGR~l~~~~~~~~~~~~~l~i~sl~R~~fiplfll~~~~~~d~~~~i~~~lfgltnGyl~t~~mi~~p~ 358 (396)
.....+.++..+++.......-+. ++|.+.....+ +....++.....++.+...+..++.|+.+|-..........+
T Consensus 262 ~~~~~~~l~~~~~~~~~g~l~dr~-g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 338 (408)
T PRK09874 262 MIASVPGVAALLSAPRLGKLGDRI-GPEKILITALI--FSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVY 338 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc-ccchhHHHHHH--HHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHH
Confidence 344566777877776543321112 22333222221 111111111222344444556778888887655444333334
Q ss_pred CCCchhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 016029 359 GYKGPEQNALGNLLVLFLLGGIFAGATLDWL 389 (396)
Q Consensus 359 ~v~~~e~e~ag~~~~~~l~~Gl~~Gs~~s~~ 389 (396)
..+++++...-.+.......|..+|..++-.
T Consensus 339 ~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~ 369 (408)
T PRK09874 339 NSSNQIAGRIFSYNQSFRDIGNVTGPLMGAA 369 (408)
T ss_pred hCCcccceeeehHHHHHHHHHHHhhHHHHHH
Confidence 4455555555445555556666666665443
No 51
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=97.34 E-value=0.034 Score=58.10 Aligned_cols=85 Identities=18% Similarity=0.166 Sum_probs=58.8
Q ss_pred hhhhHHHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHHHHHhhhhhhhccchhh
Q 016029 40 LVYQPFALITLAILAYHEAKIDTRRRIIFGYILFFASSLLVLVLDLATSGKGGLGTFIGICVISGAFGVADANVQGGMVG 119 (396)
Q Consensus 40 ~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~i~~~~~~~i~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~ 119 (396)
.+..+|.++..+....+.+|.+.++-++.+-.+..+..++++.+... +....+..++..++.|+++++.+.+..+
T Consensus 52 ~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~-----~~~~~~~Ll~~~fl~g~~~a~~~PA~~A 126 (524)
T PF05977_consen 52 AASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFF-----GLLSPWLLLILTFLLGIGSAFFNPAWQA 126 (524)
T ss_pred HHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHh-----CcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666666666678899988877777777776655555544432 1233677778889999999999999998
Q ss_pred ccc-cCCHHHH
Q 016029 120 DLS-FMTSELI 129 (396)
Q Consensus 120 la~-~~p~~~~ 129 (396)
+.. ..|++..
T Consensus 127 ~ip~lV~~~~L 137 (524)
T PF05977_consen 127 IIPELVPKEDL 137 (524)
T ss_pred HHHHhccHhhH
Confidence 864 4676543
No 52
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=97.29 E-value=0.03 Score=54.74 Aligned_cols=115 Identities=13% Similarity=0.091 Sum_probs=60.2
Q ss_pred hHHHHhhhcCCCC-CcceeehhhhHHHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHH
Q 016029 21 VVDYYVFLFPQYH-PSRILTLVYQPFALITLAILAYHEAKIDTRRRIIFGYILFFASSLLVLVLDLATSGKGGLGTFIGI 99 (396)
Q Consensus 21 a~~Yf~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~i~~~~~~~i~~~~~~~~~~~~f~~~ 99 (396)
..+..++.+.-+. .-.+....+.....+......++.+|+..+.-+..+..+..+..+.. ..+ + ++..
T Consensus 22 ~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~----~~~----~---~~~l 90 (355)
T TIGR00896 22 LLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR----SAP----G---TALL 90 (355)
T ss_pred cHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH----Hhc----c---HHHH
Confidence 4566666653211 11222233445555566667778888887766666555444333221 111 1 3334
Q ss_pred HHHHHHHhhhhhhhccchhhccccC-CHH---HHHHHHhhhhhHhHHHHHH
Q 016029 100 CVISGAFGVADANVQGGMVGDLSFM-TSE---LIQSFLAGLAASGAITSAL 146 (396)
Q Consensus 100 l~~~~~~g~~~~~~q~s~~~la~~~-p~~---~~~a~~~G~g~aGi~~s~~ 146 (396)
++..++.|++.+..+...-...... |++ .++.+..++++++.+...+
T Consensus 91 ~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~ 141 (355)
T TIGR00896 91 FAGTALIGVGIAIINVLLPSLIKRDFPQRVGLMTGLYSMALMGGAALAAAA 141 (355)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 4555667777777666555554443 333 3445556666666665544
No 53
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=97.28 E-value=0.03 Score=57.03 Aligned_cols=97 Identities=13% Similarity=-0.001 Sum_probs=52.4
Q ss_pred hhHHHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHHHHHhhhhhhhccchhhcc
Q 016029 42 YQPFALITLAILAYHEAKIDTRRRIIFGYILFFASSLLVLVLDLATSGKGGLGTFIGICVISGAFGVADANVQGGMVGDL 121 (396)
Q Consensus 42 ~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~i~~~~~~~i~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la 121 (396)
|.+...+++.....+.+|+..+.-+..+..+..+..++.+.... ..++..++.-++.|++.+........+.
T Consensus 85 ~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~--------~~~~~l~~~r~~~G~~~~~~~~~~~~~~ 156 (465)
T TIGR00894 85 HFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAG--------GGIALVVFCRVIQGLAQGSVSPATHKII 156 (465)
T ss_pred HHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHH--------cCchHHHHHHHHHHHhcccchhhHHHHH
Confidence 44444555556667778887766555555555554444321111 1133444555667777777776666665
Q ss_pred cc-CCHHHH----HHHHhhhhhHhHHHHHH
Q 016029 122 SF-MTSELI----QSFLAGLAASGAITSAL 146 (396)
Q Consensus 122 ~~-~p~~~~----~a~~~G~g~aGi~~s~~ 146 (396)
+. +|++.. .....|..++++++..+
T Consensus 157 ~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l 186 (465)
T TIGR00894 157 VKWAPPKERSRLLGMSTSGFQLGTFIFLPI 186 (465)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 565543 33445555555555443
No 54
>PRK11043 putative transporter; Provisional
Probab=97.28 E-value=0.051 Score=54.04 Aligned_cols=109 Identities=8% Similarity=-0.046 Sum_probs=54.8
Q ss_pred hhhhhhhHhhchHHHHhhhcCCCC-CcceeehhhhHHHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhhccC
Q 016029 10 GCLFSWNSMLTVVDYYVFLFPQYH-PSRILTLVYQPFALITLAILAYHEAKIDTRRRIIFGYILFFASSLLVLVLDLATS 88 (396)
Q Consensus 10 ~~LlpwN~~ita~~Yf~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~i~~~~~~~i~~~~~ 88 (396)
..-+.++.+....+.+++.+.-++ ...+....+.....+...+...+.+|.+.+.-+..+..+..+..+... ..+
T Consensus 17 ~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~---~~~- 92 (401)
T PRK11043 17 LGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGML---WVE- 92 (401)
T ss_pred HHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHH---Hhc-
Confidence 344566777666666665553211 112222234445555666666778888777655555555444433322 211
Q ss_pred CCCCchHHHHHHHHHHHHhhhhhhhccchhhcc-ccCCHHH
Q 016029 89 GKGGLGTFIGICVISGAFGVADANVQGGMVGDL-SFMTSEL 128 (396)
Q Consensus 89 ~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la-~~~p~~~ 128 (396)
+ ++..++.-++.|++.+......-++. -.+|++.
T Consensus 93 ---~---~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~ 127 (401)
T PRK11043 93 ---S---AAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQK 127 (401)
T ss_pred ---C---HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHH
Confidence 1 33344444566666554444433443 3466553
No 55
>TIGR00901 2A0125 AmpG-related permease.
Probab=97.27 E-value=0.016 Score=56.69 Aligned_cols=67 Identities=10% Similarity=-0.003 Sum_probs=38.8
Q ss_pred cchHHHHHHHHHHHHHHHHh--hccc------CCchHHHHHHHHHhhccccccceeeeccCCCCCchhhhhhhhH
Q 016029 305 RKYITAATLSRFLLVPAFYF--TAKY------GDQGWMIMLTSFLGLSNGYLTVCVLTAAPKGYKGPEQNALGNL 371 (396)
Q Consensus 305 ~~~l~i~sl~R~~fiplfll--~~~~------~~d~~~~i~~~lfgltnGyl~t~~mi~~p~~v~~~e~e~ag~~ 371 (396)
+|.+....++-.+..+++.. .+.. ++.+.....+++.++.+|......+.+-.+..++|+|...-.+
T Consensus 275 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~ 349 (356)
T TIGR00901 275 LYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMAL 349 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHH
Confidence 34555555555444443332 1221 2223344457788999888888888777777777776554333
No 56
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=97.25 E-value=0.027 Score=57.32 Aligned_cols=107 Identities=11% Similarity=0.010 Sum_probs=59.6
Q ss_pred hhhhHHHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhh--hccCCCCCchHHHHHHHHHHHHhhhhhhhccch
Q 016029 40 LVYQPFALITLAILAYHEAKIDTRRRIIFGYILFFASSLLVLVLD--LATSGKGGLGTFIGICVISGAFGVADANVQGGM 117 (396)
Q Consensus 40 ~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~i~~~~~~~i~--~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~ 117 (396)
-.+.+...++.++...+.+|+..|.=+..+.+++.+..+...... ......+....+...++.=++.|++.|......
T Consensus 62 s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~ 141 (479)
T PRK10077 62 ASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLS 141 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHH
Confidence 335556666777777888988877666666666555443322111 000011112223334455578899999988888
Q ss_pred hhcccc-CCHHHH----HHHHhhhhhHhHHHHHH
Q 016029 118 VGDLSF-MTSELI----QSFLAGLAASGAITSAL 146 (396)
Q Consensus 118 ~~la~~-~p~~~~----~a~~~G~g~aGi~~s~~ 146 (396)
.++.+. +|++.- .....|.+++++++.++
T Consensus 142 ~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~ 175 (479)
T PRK10077 142 PMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFV 175 (479)
T ss_pred HHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 888555 565543 33334445555544433
No 57
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=97.21 E-value=0.058 Score=58.67 Aligned_cols=146 Identities=8% Similarity=-0.004 Sum_probs=79.3
Q ss_pred eeehhhhHHHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHHHHHhhhhhhhccc
Q 016029 37 ILTLVYQPFALITLAILAYHEAKIDTRRRIIFGYILFFASSLLVLVLDLATSGKGGLGTFIGICVISGAFGVADANVQGG 116 (396)
Q Consensus 37 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~i~~~~~~~i~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s 116 (396)
++...+.+...++.++...+.+|+..+..+..++++..+..++.. ..+ .++..++.-++.|++.|.....
T Consensus 206 ~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~a---fa~-------s~~~llv~R~l~G~g~g~~~p~ 275 (742)
T TIGR01299 206 MLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSS---FVQ-------GYGFFLFCRLLSGFGIGGAIPI 275 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHH---HHh-------hHHHHHHHHHHHHHHHHHHHHH
Confidence 344445566666777777888888887777776666555544432 211 1444555667788888877777
Q ss_pred hhhcccc-CCHHHH----HHHHhhhhhHhHHHHHHHHHHHhhccC---Ccccc-chhhhHHhHHHHHHHHHHHHHHHHHc
Q 016029 117 MVGDLSF-MTSELI----QSFLAGLAASGAITSALRLITKAAFEN---SKDGL-RKGALLFFAISSFFEFLCVILYAFVF 187 (396)
Q Consensus 117 ~~~la~~-~p~~~~----~a~~~G~g~aGi~~s~~~ii~~~~~~~---~~~~~-~~~a~~yF~ia~~~~~~~~~~~~~~l 187 (396)
...+.+. +|++.- ..+..+.+++++++..+........+- ..... ..+-...|.+..+..+++++.++ .+
T Consensus 276 ~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~-~l 354 (742)
T TIGR01299 276 VFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALT-FM 354 (742)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHH-Hc
Confidence 7787664 566543 334456666666665543322211110 00000 01112234444455555555555 67
Q ss_pred CCChHH
Q 016029 188 PKIPIV 193 (396)
Q Consensus 188 ~k~~~~ 193 (396)
+.+|..
T Consensus 355 PESPrw 360 (742)
T TIGR01299 355 PESPRF 360 (742)
T ss_pred CCCHHH
Confidence 777664
No 58
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=97.18 E-value=0.053 Score=53.73 Aligned_cols=107 Identities=14% Similarity=-0.030 Sum_probs=57.1
Q ss_pred hhhhhHhhchHHHHhhhcCCCC-CcceeehhhhHHHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhhccCCC
Q 016029 12 LFSWNSMLTVVDYYVFLFPQYH-PSRILTLVYQPFALITLAILAYHEAKIDTRRRIIFGYILFFASSLLVLVLDLATSGK 90 (396)
Q Consensus 12 LlpwN~~ita~~Yf~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~i~~~~~~~i~~~~~~~ 90 (396)
...-+....+.+.+.+++..++ ...+....+.....+...+...+.+|.+.+.-+..+..+..+..+... ..+
T Consensus 16 ~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~---~~~--- 89 (392)
T PRK10473 16 PAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCS---LAE--- 89 (392)
T ss_pred HHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHH---HhC---
Confidence 3445566667777776654221 112223334445555566666778888765544455545444443322 211
Q ss_pred CCchHHHHHHHHHHHHhhhhhhhccchhhccc-cCCHHH
Q 016029 91 GGLGTFIGICVISGAFGVADANVQGGMVGDLS-FMTSEL 128 (396)
Q Consensus 91 ~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la~-~~p~~~ 128 (396)
+ ++..++.-++.|.+.+..+....++.. .+|++.
T Consensus 90 -~---~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~ 124 (392)
T PRK10473 90 -T---SSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRR 124 (392)
T ss_pred -c---HHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHH
Confidence 1 333344455678888877777777754 456543
No 59
>PRK12307 putative sialic acid transporter; Provisional
Probab=97.16 E-value=0.13 Score=51.35 Aligned_cols=96 Identities=11% Similarity=0.036 Sum_probs=58.2
Q ss_pred hhhhHHHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHHHHHhhhhhhhccchhh
Q 016029 40 LVYQPFALITLAILAYHEAKIDTRRRIIFGYILFFASSLLVLVLDLATSGKGGLGTFIGICVISGAFGVADANVQGGMVG 119 (396)
Q Consensus 40 ~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~i~~~~~~~i~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~ 119 (396)
..+.+...+.......+.+|.+.+.-+..+..+..+..++.. ..+ .++..++.-++.|++.+.......+
T Consensus 60 ~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~---~~~-------~~~~l~~~r~l~G~g~g~~~~~~~~ 129 (426)
T PRK12307 60 TAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSG---LAS-------GVIMLTLSRFIVGMGMAGEYACAST 129 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHH---HHh-------HHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 335555556666667778888776666666666666554433 211 1444555566788887776666666
Q ss_pred cc-ccCCHHH----HHHHHhhhhhHhHHHHH
Q 016029 120 DL-SFMTSEL----IQSFLAGLAASGAITSA 145 (396)
Q Consensus 120 la-~~~p~~~----~~a~~~G~g~aGi~~s~ 145 (396)
+. ..+|++. ++....|.++++++...
T Consensus 130 ~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~ 160 (426)
T PRK12307 130 YAVESWPKHLKSKASAFLVSGFGIGNIIAAY 160 (426)
T ss_pred HHHHhCCHhHhhHhhhHHHHHHhHHHHHHHH
Confidence 53 4456553 34456677777776653
No 60
>PRK10091 MFS transport protein AraJ; Provisional
Probab=97.15 E-value=0.038 Score=54.82 Aligned_cols=116 Identities=11% Similarity=0.126 Sum_probs=62.9
Q ss_pred hHHHHhhhcCCCC-CcceeehhhhHHHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHH
Q 016029 21 VVDYYVFLFPQYH-PSRILTLVYQPFALITLAILAYHEAKIDTRRRIIFGYILFFASSLLVLVLDLATSGKGGLGTFIGI 99 (396)
Q Consensus 21 a~~Yf~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~i~~~~~~~i~~~~~~~~~~~~f~~~ 99 (396)
..+.+++++.-++ ...+...++.....+...+...+.+|.+.+.-+..+..+..+..++.. ..+ + ++..
T Consensus 25 ~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~---~~~----~---~~~l 94 (382)
T PRK10091 25 VLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFT---LSS----S---YLML 94 (382)
T ss_pred ChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHH---HhC----c---HHHH
Confidence 4455665553211 123333445666666777777788898766555555555554443322 221 1 4445
Q ss_pred HHHHHHHhhhhhhhccchhhcccc-CCHHH----HHHHHhhhhhHhHHHHHH
Q 016029 100 CVISGAFGVADANVQGGMVGDLSF-MTSEL----IQSFLAGLAASGAITSAL 146 (396)
Q Consensus 100 l~~~~~~g~~~~~~q~s~~~la~~-~p~~~----~~a~~~G~g~aGi~~s~~ 146 (396)
++.-++.|++.+........+.+. .|++. ++.+..|+++++.+...+
T Consensus 95 ~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l 146 (382)
T PRK10091 95 AIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPL 146 (382)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccH
Confidence 555567787777665554444433 45543 334446777777665443
No 61
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=97.12 E-value=0.05 Score=53.98 Aligned_cols=99 Identities=13% Similarity=0.050 Sum_probs=56.9
Q ss_pred HHHHHHhhhhhhhhccccccccCCcchHH----HHHHHHHHHHHHHHhhcccCCchHHHHHHHHHhhccccccceeeecc
Q 016029 281 IAMYNVGDLIGRYIPLLKFFKLESRKYIT----AATLSRFLLVPAFYFTAKYGDQGWMIMLTSFLGLSNGYLTVCVLTAA 356 (396)
Q Consensus 281 ~~~fn~gD~iGR~l~~~~~~~~~~~~~l~----i~sl~R~~fiplfll~~~~~~d~~~~i~~~lfgltnGyl~t~~mi~~ 356 (396)
+....++..+++.+.... .++.++|.+. +...+|.+..+. .++.+..+..+++.|++-|-+....|.+.
T Consensus 246 ~~~~~~~~i~~~~~~~~l-~~r~g~~~~l~~~~~~~~~~~~~~~~------~~~~~~~~~~q~l~g~~~~~~~~~~~~~i 318 (382)
T TIGR00902 246 WGIGVLAEIIIFAFSNKL-FQNCSARDLLLISAIACVGRWAIIGA------IEAFPLIFLLQILHCGTFAVCHLAAMRYI 318 (382)
T ss_pred HHHHHHHHHHHHHHhHHH-HhhCCHHHHHHHHHHHHHHHHHHHHh------HhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666777766665431 1122333333 223334433321 24445566689999999999999988887
Q ss_pred CCCCCchhhhhhhh-HHHHHHHHHHHHHHHHH
Q 016029 357 PKGYKGPEQNALGN-LLVLFLLGGIFAGATLD 387 (396)
Q Consensus 357 p~~v~~~e~e~ag~-~~~~~l~~Gl~~Gs~~s 387 (396)
.+. ++++|..+=. ........|..+|+.++
T Consensus 319 ~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~ 349 (382)
T TIGR00902 319 AAQ-PGSEIAKLQALYNALAMGGLIAIFTAFA 349 (382)
T ss_pred HhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 765 6555543322 23345566777776655
No 62
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=97.10 E-value=0.018 Score=59.90 Aligned_cols=103 Identities=19% Similarity=0.093 Sum_probs=60.7
Q ss_pred HHHHHHHHHhhhhhhhhccccc-cccCCcchHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHhhccccccceeeecc
Q 016029 278 VVLIAMYNVGDLIGRYIPLLKF-FKLESRKYITAATLSRFLLVPAFYFTAKYGDQGWMIMLTSFLGLSNGYLTVCVLTAA 356 (396)
Q Consensus 278 ~~~~~~fn~gD~iGR~l~~~~~-~~~~~~~~l~i~sl~R~~fiplfll~~~~~~d~~~~i~~~lfgltnGyl~t~~mi~~ 356 (396)
-.+..+-++.|.+||....+.. .+..+++++..+++.....-. +.+...++-+..+...+++|+.-|...++.-...
T Consensus 336 a~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~--~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~ 413 (509)
T KOG2504|consen 336 AFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLAR--LFLPFATTYVGLIVFSILFGFCVGSFSSLTPVIL 413 (509)
T ss_pred HHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHH--HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788999999999987742 222234555566655554444 2222223345566679999999999988876555
Q ss_pred CCCCCchhhhhhhhHHHHHHHHHHHH
Q 016029 357 PKGYKGPEQNALGNLLVLFLLGGIFA 382 (396)
Q Consensus 357 p~~v~~~e~e~ag~~~~~~l~~Gl~~ 382 (396)
.+.+..++-.-|-.+..++-.++..+
T Consensus 414 ~~~~g~~~l~~a~Gl~l~~~gi~~l~ 439 (509)
T KOG2504|consen 414 VDLVGLEKLSNAYGLLLLFQGIGALV 439 (509)
T ss_pred HHHcChhhcchHHHHHHHHhHHHHHc
Confidence 55555444333333333333333333
No 63
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=97.10 E-value=0.027 Score=54.64 Aligned_cols=88 Identities=7% Similarity=-0.079 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHhhhhhhhccchhhccccC-CH----HHHHHHHhhhhhHhHHHHHHHHHHHhhccCCcc--------cc
Q 016029 95 TFIGICVISGAFGVADANVQGGMVGDLSFM-TS----ELIQSFLAGLAASGAITSALRLITKAAFENSKD--------GL 161 (396)
Q Consensus 95 ~f~~~l~~~~~~g~~~~~~q~s~~~la~~~-p~----~~~~a~~~G~g~aGi~~s~~~ii~~~~~~~~~~--------~~ 161 (396)
.|...++..+++|.+.+++|.+.=.+.+.. |+ +.++....-+|++.+++.++--........+.+ +.
T Consensus 9 ~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~~~ 88 (310)
T TIGR01272 9 YYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANAEA 88 (310)
T ss_pred HHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhHHH
Confidence 488889999999999999999999998755 43 345556666777777766555432221111100 11
Q ss_pred chhhhHHhHHHHHHHHHHHHH
Q 016029 162 RKGALLFFAISSFFEFLCVIL 182 (396)
Q Consensus 162 ~~~a~~yF~ia~~~~~~~~~~ 182 (396)
..-...|+.++.+..++++..
T Consensus 89 ~~~~~~yl~ia~~~~~~~i~~ 109 (310)
T TIGR01272 89 AKVHTPYLLLAGALAVLAIIF 109 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 223456777877766665533
No 64
>PRK03633 putative MFS family transporter protein; Provisional
Probab=97.06 E-value=0.097 Score=51.79 Aligned_cols=103 Identities=17% Similarity=0.076 Sum_probs=52.2
Q ss_pred HHHHHHHHhhhhhhhhccccccccCCcchHH-HHHHHHHHHHHHHHhhcccCCchHHHHHHHHHhhccccccceeeeccC
Q 016029 279 VLIAMYNVGDLIGRYIPLLKFFKLESRKYIT-AATLSRFLLVPAFYFTAKYGDQGWMIMLTSFLGLSNGYLTVCVLTAAP 357 (396)
Q Consensus 279 ~~~~~fn~gD~iGR~l~~~~~~~~~~~~~l~-i~sl~R~~fiplfll~~~~~~d~~~~i~~~lfgltnGyl~t~~mi~~p 357 (396)
.....+.++..+||....... .+.++|... .....-.+...++. . .+.....+.++|+..+-.....+...-
T Consensus 239 ~~~~~~~~~~~~~~~~~g~l~-dr~~~~~~l~~~~~~~~~~~~~~~-----~-~~~~~~~~~l~g~~~~~~~p~~~~~~~ 311 (381)
T PRK03633 239 FWMALLVSAGILGQWPIGRLA-DRFGRLLVLRVQVFVVILGSIAML-----S-QAAMAPALFILGAAGFTLYPVAMAWAC 311 (381)
T ss_pred HHHHHHHHHHHHHHhhhHHHH-HHcCcHHHHHHHHHHHHHHHHHHh-----h-hHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 346678888899888765421 122333322 22222222111111 1 222333456667665534445555555
Q ss_pred CCCCchhhhhhhhHHHHHHHHHHHHHHHHHH
Q 016029 358 KGYKGPEQNALGNLLVLFLLGGIFAGATLDW 388 (396)
Q Consensus 358 ~~v~~~e~e~ag~~~~~~l~~Gl~~Gs~~s~ 388 (396)
+..+++++..+......+..+|-.+|..++=
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G 342 (381)
T PRK03633 312 EKVEHHELVAMNQALLLSYTVGSLLGPSFTA 342 (381)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666555555555566677777765543
No 65
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=97.05 E-value=0.015 Score=57.87 Aligned_cols=87 Identities=9% Similarity=0.016 Sum_probs=61.2
Q ss_pred HHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHHHHHhhhhhhhccchhhccccCCHH----
Q 016029 52 ILAYHEAKIDTRRRIIFGYILFFASSLLVLVLDLATSGKGGLGTFIGICVISGAFGVADANVQGGMVGDLSFMTSE---- 127 (396)
Q Consensus 52 ~~~~~~~~~~~~~Ri~~~~~~~~i~~~~~~~i~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la~~~p~~---- 127 (396)
-...+.+|.+++.-++.|+.++.+.++++. +... ...|...+...+++|.+-+++|.+.=.+.+.+.++
T Consensus 67 pa~~~~kk~gyk~gi~lgL~l~avg~~lF~--pAa~-----~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~ 139 (422)
T COG0738 67 PAGLLIKKLGYKAGIVLGLLLYAVGAALFW--PAAS-----SKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAA 139 (422)
T ss_pred cHHHHHHHhhhHHHHHHHHHHHHHHHHHHh--hhhh-----hhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHH
Confidence 344678999999999999999998877653 2221 22366677888999999999999998886665433
Q ss_pred -HHHHHHhhhhhHhHHHHH
Q 016029 128 -LIQSFLAGLAASGAITSA 145 (396)
Q Consensus 128 -~~~a~~~G~g~aGi~~s~ 145 (396)
-++....=++++.+++-+
T Consensus 140 ~rlnl~q~fn~lGa~~gp~ 158 (422)
T COG0738 140 FRLNLAQAFNGLGAILGPL 158 (422)
T ss_pred HHHHHHHHhhhhHHHHHHH
Confidence 234445555565555533
No 66
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=96.90 E-value=0.04 Score=55.21 Aligned_cols=295 Identities=18% Similarity=0.113 Sum_probs=137.0
Q ss_pred HHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHHHHHhhhhhhhccchhhc-cccCCHH
Q 016029 49 TLAILAYHEAKIDTRRRIIFGYILFFASSLLVLVLDLATSGKGGLGTFIGICVISGAFGVADANVQGGMVGD-LSFMTSE 127 (396)
Q Consensus 49 ~~~~~~~~~~~~~~~~Ri~~~~~~~~i~~~~~~~i~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~l-a~~~p~~ 127 (396)
...++..+.+|.+.+.=+..++++..++.+++-..+ ..++..++.++.|.+.|..-..+... +.-+|++
T Consensus 80 sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~----------s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~ 149 (448)
T COG2271 80 SKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSP----------SLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRK 149 (448)
T ss_pred HHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhhh----------HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCcc
Confidence 345566677888777777777777777766543211 13334444455555555444444444 3334533
Q ss_pred H----HHHHHhhhhhHhHHHHHHHHHHHhhccCCccccchhhhHHhHHHHHHHHHHHHHHHHHcCCChHHHHHHHhhhcc
Q 016029 128 L----IQSFLAGLAASGAITSALRLITKAAFENSKDGLRKGALLFFAISSFFEFLCVILYAFVFPKIPIVKYYRNKAASE 203 (396)
Q Consensus 128 ~----~~a~~~G~g~aGi~~s~~~ii~~~~~~~~~~~~~~~a~~yF~ia~~~~~~~~~~~~~~l~k~~~~~~~~~~~~~~ 203 (396)
= .+.+.+-.+++|-+...+-.. +...+. -...+- |+.-+.+.+++++++++ .++..|.. +
T Consensus 150 eRG~~~siWn~shNiGGal~~~~~~l--a~~~~~---~~w~~~-f~~pgiiaiival~~~~-~~rd~Pqs---------~ 213 (448)
T COG2271 150 ERGTWWSIWNTSHNIGGALAPLVALL--AFFAFH---GGWRAA-FYFPGIIAIIVALILLF-LLRDRPQS---------E 213 (448)
T ss_pred ccCceEEEehhhhhcccchHHHHHHH--HHHHhc---cchhHH-HHHHHHHHHHHHHHHHH-HhCCCccc---------c
Confidence 2 222333344444443333322 222111 122333 22334444556777776 55444431 1
Q ss_pred CCccccchhhhccCccCccc-ccccccccccHHHHH-------HHHHHHHHHHHHHhhhhcccc---CceEeeccCCCCC
Q 016029 204 GSKTVAADLAAGGIQMLSKE-EVEKCSERFSNKQLL-------LQNIDYAIDMFVIYTLTLSIF---PGFLSEDTGSHSL 272 (396)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~-------k~i~~~~~~~~l~f~vTl~vF---P~i~~~~~~~~~~ 272 (396)
+ .++-++..+ ++.|. +++++.+..+.|+++ |-+|..+++-+++|++=..+- |-...+.+ |.
T Consensus 214 G--LP~ie~~~~---d~~e~~~~~~~~~~ls~~~i~~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k--~~- 285 (448)
T COG2271 214 G--LPPIEEYRG---DPLEIYEEEKENEGLTAWQIFVKYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEVK--GF- 285 (448)
T ss_pred C--CCCHHHhhc---CchhhhhhhccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhc--CC-
Confidence 1 100000000 00000 111111113344444 357888899999999876443 22222211 11
Q ss_pred CchHHHHHHHHHHHhhhhhhhhccccccccC-CcchHHHHHHHHHHHHHHHHhhcccCCc--hHHHHHHHHHhhcccccc
Q 016029 273 GGWYAVVLIAMYNVGDLIGRYIPLLKFFKLE-SRKYITAATLSRFLLVPAFYFTAKYGDQ--GWMIMLTSFLGLSNGYLT 349 (396)
Q Consensus 273 ~~w~~~~~~~~fn~gD~iGR~l~~~~~~~~~-~~~~l~i~sl~R~~fiplfll~~~~~~d--~~~~i~~~lfgltnGyl~ 349 (396)
+.=..-..+.+|=++-+.|-.++++-.=+.. .+|....+..+=.+++-+..+-. -++. +...+..+..|+
T Consensus 286 s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~-~~~~~~~l~~~~l~~iGf------ 358 (448)
T COG2271 286 SLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWL-APNGSYLLDAILLFIIGF------ 358 (448)
T ss_pred CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHc-CCCccHHHHHHHHHHHHH------
Confidence 1112345588999999999999887432222 33332222111111111111100 1222 333334555555
Q ss_pred ceeeeccCCC------CCchhhhhhhhHHHHHHHHHHHHHHHHH
Q 016029 350 VCVLTAAPKG------YKGPEQNALGNLLVLFLLGGIFAGATLD 387 (396)
Q Consensus 350 t~~mi~~p~~------v~~~e~e~ag~~~~~~l~~Gl~~Gs~~s 387 (396)
.+|||+. ++-..|+.||...++.=.+|=..|+.++
T Consensus 359 ---~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a 399 (448)
T COG2271 359 ---LIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALA 399 (448)
T ss_pred ---HHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhc
Confidence 4677764 2334577777777776666666666554
No 67
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=96.82 E-value=0.06 Score=53.39 Aligned_cols=57 Identities=14% Similarity=0.096 Sum_probs=33.1
Q ss_pred CCchHHHHHHHHHhhccccccceeeeccCCCCCchhhhh-hhhHHHHHHHHHHHHHHHH
Q 016029 329 GDQGWMIMLTSFLGLSNGYLTVCVLTAAPKGYKGPEQNA-LGNLLVLFLLGGIFAGATL 386 (396)
Q Consensus 329 ~~d~~~~i~~~lfgltnGyl~t~~mi~~p~~v~~~e~e~-ag~~~~~~l~~Gl~~Gs~~ 386 (396)
++.+..++.++++|++.|......+.+..+. +++++.. .|....+....|..+|..+
T Consensus 291 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i 348 (382)
T PRK11128 291 TALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVL 348 (382)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566679999999998777777665554 3333322 2333334444555555544
No 68
>PRK15011 sugar efflux transporter B; Provisional
Probab=96.82 E-value=0.14 Score=51.07 Aligned_cols=58 Identities=10% Similarity=-0.019 Sum_probs=31.4
Q ss_pred chHHHHHHHHHhhccccccceeeeccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 016029 331 QGWMIMLTSFLGLSNGYLTVCVLTAAPKGYKGPEQNALGNLLVLFLLGGIFAGATLDWL 389 (396)
Q Consensus 331 d~~~~i~~~lfgltnGyl~t~~mi~~p~~v~~~e~e~ag~~~~~~l~~Gl~~Gs~~s~~ 389 (396)
.++..+.+++.++..|......+.+..+ ..|++|+.+..+.......|..+|+.++=.
T Consensus 305 ~~~~l~~~~l~~~~~g~~~~~~~~~~~~-~~p~~~g~~~~~~~~~~~lg~~~g~~l~G~ 362 (393)
T PRK15011 305 PAILLGLQLLNAIYIGILGGIGMLYFQD-LMPGQAGSATTLYTNTSRVGWIIAGSLAGI 362 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444555555555544433333222 234456666666666667888888776643
No 69
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=96.77 E-value=0.35 Score=48.04 Aligned_cols=156 Identities=13% Similarity=0.063 Sum_probs=78.5
Q ss_pred hhHhhchHHHHhhhcCCCCC-cceeehhhhHHHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCc
Q 016029 15 WNSMLTVVDYYVFLFPQYHP-SRILTLVYQPFALITLAILAYHEAKIDTRRRIIFGYILFFASSLLVLVLDLATSGKGGL 93 (396)
Q Consensus 15 wN~~ita~~Yf~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~i~~~~~~~i~~~~~~~~~~ 93 (396)
|-.+-...+..++.+.-++- ..+....+.....+.++....+.+|.. ++|+..+.....+...+. ....+
T Consensus 7 ~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~g-rr~~~~~~~~~~~~~~~~--~~~~~------ 77 (368)
T TIGR00903 7 WVTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAF-KRWFLFGSLATFAAAAGR--LLDPF------ 77 (368)
T ss_pred HHHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-chHHHHHHHHHHHHHHHH--HHHhc------
Confidence 44455555666665532111 122333344444555666677888886 555554443333322211 11101
Q ss_pred hHHHHHHHHHHHHhhhhhhhccchhhccccCCHHH----HHHHHhhhhhHhHHHHHHHHHHHhhccCCccccchhhhHHh
Q 016029 94 GTFIGICVISGAFGVADANVQGGMVGDLSFMTSEL----IQSFLAGLAASGAITSALRLITKAAFENSKDGLRKGALLFF 169 (396)
Q Consensus 94 ~~f~~~l~~~~~~g~~~~~~q~s~~~la~~~p~~~----~~a~~~G~g~aGi~~s~~~ii~~~~~~~~~~~~~~~a~~yF 169 (396)
.+...++.-++.|++.+....+....+..+|++. ++....|++++++++.++--..... ..++. .|+
T Consensus 78 -~~~~l~~~R~l~G~g~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~-------~gWr~-~f~ 148 (368)
T TIGR00903 78 -NYEWLLACQLLAALGQPFLLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTA-------GGLQL-LII 148 (368)
T ss_pred -cHHHHHHHHHHHHhHhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-------cchHH-HHH
Confidence 1555556666778777765555555566677553 4555577778877776554433211 12343 344
Q ss_pred HHHHHHHHHHHHHHHHHcCC
Q 016029 170 AISSFFEFLCVILYAFVFPK 189 (396)
Q Consensus 170 ~ia~~~~~~~~~~~~~~l~k 189 (396)
..+.+-.+.++..+. .+++
T Consensus 149 ~~~~l~~~~~~~~~~-~lp~ 167 (368)
T TIGR00903 149 PIAAVAAAGIILVLA-ALPA 167 (368)
T ss_pred HHHHHHHHHHHHHHH-HcCC
Confidence 444444444555554 4443
No 70
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=96.71 E-value=0.18 Score=49.93 Aligned_cols=27 Identities=7% Similarity=-0.247 Sum_probs=20.8
Q ss_pred eeeehhhhhhhhhhHhhchHHHHhhhc
Q 016029 3 VCWLLGNGCLFSWNSMLTVVDYYVFLF 29 (396)
Q Consensus 3 ~F~~lGi~~LlpwN~~ita~~Yf~~~~ 29 (396)
.++.++...=+|.+......++|-++.
T Consensus 5 ~~~~ly~~~g~~~~~~~p~lp~~l~~~ 31 (390)
T TIGR02718 5 TLGLLYLSQGIPIGLAMDALPTLLRED 31 (390)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHc
Confidence 345567777789999999988888664
No 71
>PRK09952 shikimate transporter; Provisional
Probab=96.70 E-value=0.2 Score=50.86 Aligned_cols=95 Identities=11% Similarity=0.092 Sum_probs=51.5
Q ss_pred HHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHHHHHhhhhhhhccchhhcccc-CCHH--
Q 016029 51 AILAYHEAKIDTRRRIIFGYILFFASSLLVLVLDLATSGKGGLGTFIGICVISGAFGVADANVQGGMVGDLSF-MTSE-- 127 (396)
Q Consensus 51 ~~~~~~~~~~~~~~Ri~~~~~~~~i~~~~~~~i~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la~~-~p~~-- 127 (396)
++...+.+|+..+.-+..+..+..+.+++....+... ..+....+..++.=++.|++.|..-.+...+.+. .|+|
T Consensus 82 ~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~r 159 (438)
T PRK09952 82 VVFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFS--TIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKK 159 (438)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHH--HHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCC
Confidence 4445677888776666667666666665544222110 0000111123344466777776665555555544 5644
Q ss_pred --HHHHHHhhhhhHhHHHHHHH
Q 016029 128 --LIQSFLAGLAASGAITSALR 147 (396)
Q Consensus 128 --~~~a~~~G~g~aGi~~s~~~ 147 (396)
+......|.+++.+++..+-
T Consensus 160 g~~~~~~~~g~~~G~~l~~~~~ 181 (438)
T PRK09952 160 AFYSSGVQVGYGVGLLLSTGLV 181 (438)
T ss_pred cHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777777777765543
No 72
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=96.61 E-value=0.6 Score=48.10 Aligned_cols=88 Identities=14% Similarity=0.091 Sum_probs=58.5
Q ss_pred HHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHHHHHhhhhhhhccchhhccccCC
Q 016029 46 ALITLAILAYHEAKIDTRRRIIFGYILFFASSLLVLVLDLATSGKGGLGTFIGICVISGAFGVADANVQGGMVGDLSFMT 125 (396)
Q Consensus 46 ~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~i~~~~~~~i~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la~~~p 125 (396)
.+++++-...+.+|+..+..+..+..+..+.++++|..... .++..+++=++.|++.|..-.+.-++.++..
T Consensus 86 ~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~--------~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~ 157 (466)
T KOG2532|consen 86 YILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASI--------GFYLLLVLRFLQGLGQGVLFPAIGSILAKWA 157 (466)
T ss_pred HHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHh--------cchhhHHHHHHhHHHHhHHHhhhhceeeeEC
Confidence 33444444567788888888888888888888888755421 1444456667888888888888888887765
Q ss_pred HHHHHHHHhhhhhHhH
Q 016029 126 SELIQSFLAGLAASGA 141 (396)
Q Consensus 126 ~~~~~a~~~G~g~aGi 141 (396)
|..-.+...+...+|-
T Consensus 158 P~~Ers~~~ail~~g~ 173 (466)
T KOG2532|consen 158 PPNERSTFIAILTAGS 173 (466)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 5444444444444443
No 73
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=96.57 E-value=0.31 Score=48.58 Aligned_cols=94 Identities=14% Similarity=0.061 Sum_probs=57.6
Q ss_pred hhHHHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHHHHHhhhhhhhccchhhcc
Q 016029 42 YQPFALITLAILAYHEAKIDTRRRIIFGYILFFASSLLVLVLDLATSGKGGLGTFIGICVISGAFGVADANVQGGMVGDL 121 (396)
Q Consensus 42 ~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~i~~~~~~~i~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la 121 (396)
+.....+.+.....+.+|...|.=+..+..+..+.+++.. ..+ .++..++.-++.|++.+..+.....+.
T Consensus 53 ~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~---~a~-------~~~~ll~~r~l~Gig~~~~~~~~~~~~ 122 (393)
T PRK09705 53 PVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRE---LYP-------QSALLLSSALLGGVGIGIIQAVMPSVI 122 (393)
T ss_pred HHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHH---HCc-------chHHHHHHHHHHHhHHHHHhhhhhHHH
Confidence 4444455556667788888887777777777777766543 221 144455667788999988887777776
Q ss_pred cc-CCHH---HHHHHHhhhhhHhHHHHH
Q 016029 122 SF-MTSE---LIQSFLAGLAASGAITSA 145 (396)
Q Consensus 122 ~~-~p~~---~~~a~~~G~g~aGi~~s~ 145 (396)
.. +|+| .+..+..|+..++.+...
T Consensus 123 ~~~~~~~~~~~~g~~~~~~~~g~~~g~~ 150 (393)
T PRK09705 123 KRRFQQRTPLVMGLWSAALMGGGGLGAA 150 (393)
T ss_pred HHHccccchhHHHHHHHHHHHHHHHHHH
Confidence 55 4433 223334444444444433
No 74
>PRK09669 putative symporter YagG; Provisional
Probab=96.54 E-value=0.33 Score=49.23 Aligned_cols=59 Identities=10% Similarity=-0.014 Sum_probs=37.0
Q ss_pred HHHHHHHHHhhccccccceeeeccCCCCCchhh----hhh---hhHHHHHHHHHHHHHHHHHHHHH
Q 016029 333 WMIMLTSFLGLSNGYLTVCVLTAAPKGYKGPEQ----NAL---GNLLVLFLLGGIFAGATLDWLWL 391 (396)
Q Consensus 333 ~~~i~~~lfgltnGyl~t~~mi~~p~~v~~~e~----e~a---g~~~~~~l~~Gl~~Gs~~s~~~~ 391 (396)
...+..++.|+..|-...+....-++.+|.+|. +.. -.+.+++..+|..+|+.++-..+
T Consensus 321 ~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll 386 (444)
T PRK09669 321 LIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWIL 386 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567788888887666665555666653332 222 34566677888888887765443
No 75
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=96.53 E-value=0.7 Score=46.08 Aligned_cols=109 Identities=10% Similarity=0.010 Sum_probs=57.0
Q ss_pred HHHHHHHhhhhhhhhccccccccCCcchHH-HHHHHHHHH-HHHHHhhcc-cCCchHHHHHHHHHhhccccccceeeecc
Q 016029 280 LIAMYNVGDLIGRYIPLLKFFKLESRKYIT-AATLSRFLL-VPAFYFTAK-YGDQGWMIMLTSFLGLSNGYLTVCVLTAA 356 (396)
Q Consensus 280 ~~~~fn~gD~iGR~l~~~~~~~~~~~~~l~-i~sl~R~~f-iplfll~~~-~~~d~~~~i~~~lfgltnGyl~t~~mi~~ 356 (396)
....+.++..+|+....+..=+..++|.+. ...++-.+. +.+...... .++.+...+..+++|+..|....... .
T Consensus 262 ~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~--~ 339 (402)
T TIGR00897 262 IWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVALIIAIALGIFLAGYVPLAA--V 339 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHH--H
Confidence 345677888899887655311222223221 112222221 122111111 23344455567778877765433221 1
Q ss_pred CCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 016029 357 PKGYKGPEQNALGNLLVLFLLGGIFAGATLDWLW 390 (396)
Q Consensus 357 p~~v~~~e~e~ag~~~~~~l~~Gl~~Gs~~s~~~ 390 (396)
..+.+|++|..+-.+......+|-.+|..++-..
T Consensus 340 ~~~~~~~~~g~~~g~~~~~~~lg~~~gp~i~g~l 373 (402)
T TIGR00897 340 FPTLAPKHKGAAMSVLNLSAGLSAFLAPAIAVLF 373 (402)
T ss_pred HHhhCcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2235566788887888888888877777665433
No 76
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=96.53 E-value=0.59 Score=46.74 Aligned_cols=56 Identities=11% Similarity=-0.091 Sum_probs=34.1
Q ss_pred hHHHHHHHHHhhccccccceeeeccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHH
Q 016029 332 GWMIMLTSFLGLSNGYLTVCVLTAAPKGYKGPEQNALGNLLVLFLLGGIFAGATLD 387 (396)
Q Consensus 332 ~~~~i~~~lfgltnGyl~t~~mi~~p~~v~~~e~e~ag~~~~~~l~~Gl~~Gs~~s 387 (396)
++..+...+++...|-..........+.+++++|..+-.+..+....|-.+|..++
T Consensus 298 ~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~ 353 (400)
T PRK11646 298 QQLFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGG 353 (400)
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccch
Confidence 33334456676665533333334444566777888777777777777777775443
No 77
>PRK03893 putative sialic acid transporter; Provisional
Probab=96.47 E-value=0.59 Score=47.77 Aligned_cols=97 Identities=11% Similarity=0.127 Sum_probs=55.4
Q ss_pred hhHHHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHHHHHhhhhhhhccchhhc-
Q 016029 42 YQPFALITLAILAYHEAKIDTRRRIIFGYILFFASSLLVLVLDLATSGKGGLGTFIGICVISGAFGVADANVQGGMVGD- 120 (396)
Q Consensus 42 ~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~i~~~~~~~i~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~l- 120 (396)
+.....+..+....+.+|...+.-+..+.++..+..++.. ..+ .++..++..++.|++.+..+.....+
T Consensus 64 ~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~---~~~-------~~~~l~~~~~l~G~~~~~~~~~~~~~~ 133 (496)
T PRK03893 64 AFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACG---FAP-------GYWTLFIARLVIGMGMAGEYGSSATYV 133 (496)
T ss_pred HHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHH---HHh-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445556666777888766555556555555444332 211 14555566677788877776666665
Q ss_pred cccCCHHHH----HHHHhhhhhHhHHHHHHHH
Q 016029 121 LSFMTSELI----QSFLAGLAASGAITSALRL 148 (396)
Q Consensus 121 a~~~p~~~~----~a~~~G~g~aGi~~s~~~i 148 (396)
...+|++.. .....+.++++++...+.-
T Consensus 134 ~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 165 (496)
T PRK03893 134 IESWPKHLRNKASGFLISGFSIGAVVAAQVYS 165 (496)
T ss_pred HHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666542 3455666666666654443
No 78
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=96.41 E-value=0.22 Score=49.52 Aligned_cols=56 Identities=5% Similarity=-0.030 Sum_probs=31.2
Q ss_pred CCchHHHHHHHHHhhccccccceeeeccCCCCCchhhhhhhhH-HHHHHHHHHHHHH
Q 016029 329 GDQGWMIMLTSFLGLSNGYLTVCVLTAAPKGYKGPEQNALGNL-LVLFLLGGIFAGA 384 (396)
Q Consensus 329 ~~d~~~~i~~~lfgltnGyl~t~~mi~~p~~v~~~e~e~ag~~-~~~~l~~Gl~~Gs 384 (396)
++.++..+..++.|+..+......+.+.++..+++.+..+... .++...+|-.+|+
T Consensus 305 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~ 361 (396)
T TIGR00882 305 TTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLS 361 (396)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHH
Confidence 4556666667788887766655555566666555544332222 3344445544444
No 79
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=96.36 E-value=0.037 Score=57.31 Aligned_cols=198 Identities=14% Similarity=0.147 Sum_probs=97.3
Q ss_pred eehhhhHHHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHHHHHhhhhhhhccch
Q 016029 38 LTLVYQPFALITLAILAYHEAKIDTRRRIIFGYILFFASSLLVLVLDLATSGKGGLGTFIGICVISGAFGVADANVQGGM 117 (396)
Q Consensus 38 ~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~i~~~~~~~i~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~ 117 (396)
....+.+.-.++++....+.+|+|.+.=+....+...+..++ ... ...|+..+++=++.|.+.|..-.+.
T Consensus 86 ~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~----~~~------~~s~~~~ialr~llGl~es~~wP~~ 155 (495)
T KOG2533|consen 86 LDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFL----TAA------VHSFPGLIALRFLLGLFESGGWPGV 155 (495)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHH----HHH------HhhhHHHHHHHHHHHHHhcccchHH
Confidence 334455555556666667788998332222222222222211 111 1124445555556566555555555
Q ss_pred hhcccc-CCHHH----HHHHHhhhhhHhHHHHHHHHHHHhhccCCccccchhhhHHhHHHHHHHHHHHHHHHHHcCCChH
Q 016029 118 VGDLSF-MTSEL----IQSFLAGLAASGAITSALRLITKAAFENSKDGLRKGALLFFAISSFFEFLCVILYAFVFPKIPI 192 (396)
Q Consensus 118 ~~la~~-~p~~~----~~a~~~G~g~aGi~~s~~~ii~~~~~~~~~~~~~~~a~~yF~ia~~~~~~~~~~~~~~l~k~~~ 192 (396)
-.+.+. +.++- +..+.+.++++++++++++-...- .+. .....-=...|.+.+++..+..+++|+ .++..|.
T Consensus 156 ~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~-~~~-~~~~~gW~~~FiI~G~i~~~~gi~~f~-~lp~~P~ 232 (495)
T KOG2533|consen 156 VAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFK-LNG-SGGLAGWRWLFIIEGVITLVLGIVVFF-FLPDNPS 232 (495)
T ss_pred HHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhh-hcC-CCCcCCceeehhHHHHHHHHHHheEEE-EecCChh
Confidence 555444 44332 456667888888888877765322 111 111111123445566666666888888 8888887
Q ss_pred HHHHHHhhhccCCccccchhhhccCccCcccccccccccccHHHHHH--HHHHHHHHHHHHhhhhc
Q 016029 193 VKYYRNKAASEGSKTVAADLAAGGIQMLSKEEVEKCSERFSNKQLLL--QNIDYAIDMFVIYTLTL 256 (396)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~k--~i~~~~~~~~l~f~vTl 256 (396)
-..+++++ | ++ ...++.++++.++.+++.++..+++.+| ++|++.++.++...+..
T Consensus 233 ~~~fl~~~--e--k~----~~~~~~~~~~~~~~~~~~~~~~~~~a~~dp~vw~~~l~~~~~~lv~~ 290 (495)
T KOG2533|consen 233 KAWFLTDE--E--KE----LVVERLRESPSGGIENKFKWKGFKEALKDPGVWPFSLCYFFLKLVNY 290 (495)
T ss_pred hccccchH--H--HH----HHHHHHHhccCCCcccccCHHHHHHHHhchhHHHHHHHHHHHhhccc
Confidence 33222111 0 00 0000011111111111144556777776 67888877777777655
No 80
>PF13347 MFS_2: MFS/sugar transport protein
Probab=96.30 E-value=0.37 Score=48.59 Aligned_cols=65 Identities=17% Similarity=0.125 Sum_probs=43.9
Q ss_pred CCchHHHHHHHHHhhccccccceeeeccCCCCCchh----hhhhh---hHHHHHHHHHHHHHHHHHHHHHhc
Q 016029 329 GDQGWMIMLTSFLGLSNGYLTVCVLTAAPKGYKGPE----QNALG---NLLVLFLLGGIFAGATLDWLWLIG 393 (396)
Q Consensus 329 ~~d~~~~i~~~lfgltnGyl~t~~mi~~p~~v~~~e----~e~ag---~~~~~~l~~Gl~~Gs~~s~~~~~~ 393 (396)
++.++..+..++.|+..|-........-++.++.+| |+..| .+.++..-.|..+|..+....+-.
T Consensus 313 ~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~ 384 (428)
T PF13347_consen 313 GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLAL 384 (428)
T ss_pred hhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 466677778999999888777766666677776443 23344 556667777888777766655433
No 81
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=96.28 E-value=0.53 Score=48.57 Aligned_cols=140 Identities=13% Similarity=0.089 Sum_probs=66.8
Q ss_pred hhHHHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHHHHHhhhhhhhccchhhcc
Q 016029 42 YQPFALITLAILAYHEAKIDTRRRIIFGYILFFASSLLVLVLDLATSGKGGLGTFIGICVISGAFGVADANVQGGMVGDL 121 (396)
Q Consensus 42 ~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~i~~~~~~~i~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la 121 (396)
+-+...++..+...+.+|...|.-+..+..+.....+... .... ...+-..++.=.+.|+.+|+..+..-=+-
T Consensus 69 f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~-~s~~------~~~~e~li~GR~i~Gl~~gl~~~~~pmyl 141 (485)
T KOG0569|consen 69 FFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMG-LSKS------APSFEMLILGRLIVGLACGLSTGLVPMYL 141 (485)
T ss_pred HHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHH-HHHH------hhhHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4444556666777777777666444444333332222211 1111 01133344455667777777665555555
Q ss_pred ccCCHHHH-HHHHhhhhhHhHHHHHHHHHHH--hhccCCccccchhhhHH-hHHHHHHHHHHHHHHHHHcCCChHHHH
Q 016029 122 SFMTSELI-QSFLAGLAASGAITSALRLITK--AAFENSKDGLRKGALLF-FAISSFFEFLCVILYAFVFPKIPIVKY 195 (396)
Q Consensus 122 ~~~p~~~~-~a~~~G~g~aGi~~s~~~ii~~--~~~~~~~~~~~~~a~~y-F~ia~~~~~~~~~~~~~~l~k~~~~~~ 195 (396)
+.-.|+.. ++...=+.++..++.++.-+.- -..+ .. ...-| +....+..++.++... .++.+|-+-.
T Consensus 142 ~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilG-----t~-~~W~~l~~~~~i~~~~~l~~l~-~~PESPk~Ll 212 (485)
T KOG0569|consen 142 TEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLG-----TE-DLWPYLLAFPLIPALLQLALLP-FLPESPKYLL 212 (485)
T ss_pred hhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcC-----CC-cchHHHHHHHHHHHHHHHHHHh-cCCCCcchHH
Confidence 55555554 4444445555555544442221 1111 11 22223 3444444455555555 6777776543
No 82
>PRK11010 ampG muropeptide transporter; Validated
Probab=96.24 E-value=0.38 Score=49.74 Aligned_cols=137 Identities=9% Similarity=0.008 Sum_probs=69.0
Q ss_pred eeeehhhhhhhhhhHhhchHHHHhhhcCCCCCcceeehhhhH-HHHHHHHHHHHhhccC-----CcchhhH-HHHHHHHH
Q 016029 3 VCWLLGNGCLFSWNSMLTVVDYYVFLFPQYHPSRILTLVYQP-FALITLAILAYHEAKI-----DTRRRII-FGYILFFA 75 (396)
Q Consensus 3 ~F~~lGi~~LlpwN~~ita~~Yf~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~-----~~~~Ri~-~~~~~~~i 75 (396)
.++++|..+-+|.-..-...+.|.... |.+.+. ......+ .......+...+.+|. ..+++.. .+.+...+
T Consensus 16 ~~~~l~~~~gl~~~~~~~~l~~~l~~~-g~~~~~-ig~~~~~~~~~~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~ 93 (491)
T PRK11010 16 ILLILGFASGLPLALTSGTLQAWMTVE-NIDLKT-IGFFSLVGQAYVFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLV 93 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCHHH-HHHHHHHHHHHHHHHHHHHHHHcccccCCCCchHHHHHHHHHHHH
Confidence 456778888888887777665554332 211111 1111111 1113445555566775 3223323 34333434
Q ss_pred HHHHHHHhhhccCCCCCchHHHHHHHHHHHHhhhhhhhccchhhcccc-CCHH----HHHHHHhhhhhHhHHHHHHHH
Q 016029 76 SSLLVLVLDLATSGKGGLGTFIGICVISGAFGVADANVQGGMVGDLSF-MTSE----LIQSFLAGLAASGAITSALRL 148 (396)
Q Consensus 76 ~~~~~~~i~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la~~-~p~~----~~~a~~~G~g~aGi~~s~~~i 148 (396)
.+..+...+- ...++...+..++.+++.+..+...-++... +|++ .....+.|..++.+++..+-.
T Consensus 94 ~~~~~a~~~~-------~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~ 164 (491)
T PRK11010 94 AIAAMGFLEP-------GTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLAL 164 (491)
T ss_pred HHHHHHHcCC-------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4333322221 1225555555566777777777776677544 5533 244466777777777755443
No 83
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=96.20 E-value=1.1 Score=46.14 Aligned_cols=66 Identities=15% Similarity=0.074 Sum_probs=53.8
Q ss_pred CchHHHHHHHHHhhccccccceeeeccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhcCC
Q 016029 330 DQGWMIMLTSFLGLSNGYLTVCVLTAAPKGYKGPEQNALGNLLVLFLLGGIFAGATLDWLWLIGKG 395 (396)
Q Consensus 330 ~d~~~~i~~~lfgltnGyl~t~~mi~~p~~v~~~e~e~ag~~~~~~l~~Gl~~Gs~~s~~~~~~~~ 395 (396)
+-+|.++.++++++..+......+...-+..|++.|...-.+..+....|-.+|+.++-......|
T Consensus 380 s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~ 445 (475)
T TIGR00924 380 SPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQG 445 (475)
T ss_pred CHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 567777789999999999988888887888888889888888888889999998887765544433
No 84
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=96.12 E-value=1.7 Score=43.76 Aligned_cols=96 Identities=11% Similarity=0.046 Sum_probs=53.5
Q ss_pred hhHHHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHHHHHhhhhhhhccchhhcc
Q 016029 42 YQPFALITLAILAYHEAKIDTRRRIIFGYILFFASSLLVLVLDLATSGKGGLGTFIGICVISGAFGVADANVQGGMVGDL 121 (396)
Q Consensus 42 ~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~i~~~~~~~i~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la 121 (396)
|.+...+.++....+.+|+..+.-+..+..+..+..+... ..+ + ++..++.-++.|++.+......+...
T Consensus 60 ~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~---~a~----~---~~~l~~~r~l~Gi~~~~~~~~~~~~~ 129 (413)
T PRK15403 60 YLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATL---FTT----S---MTQFLIARFIQGTSICFIATVGYVTV 129 (413)
T ss_pred HHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHH---HcC----C---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666778888777666666655555444332 221 1 44445555667777776555555543
Q ss_pred c-cCCHHH----HHHHHhhhhhHhHHHHHHH
Q 016029 122 S-FMTSEL----IQSFLAGLAASGAITSALR 147 (396)
Q Consensus 122 ~-~~p~~~----~~a~~~G~g~aGi~~s~~~ 147 (396)
. .+|++. +..+..+.+++.+++.++-
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg 160 (413)
T PRK15403 130 QEAFGQTKGIKLMAIITSIVLVAPIIGPLSG 160 (413)
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 456543 3344555666666654443
No 85
>PRK10054 putative transporter; Provisional
Probab=95.98 E-value=0.43 Score=47.66 Aligned_cols=96 Identities=9% Similarity=0.044 Sum_probs=46.1
Q ss_pred hhHHHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHHHHHhhhhhhhccchhhcc
Q 016029 42 YQPFALITLAILAYHEAKIDTRRRIIFGYILFFASSLLVLVLDLATSGKGGLGTFIGICVISGAFGVADANVQGGMVGDL 121 (396)
Q Consensus 42 ~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~i~~~~~~~i~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la 121 (396)
+.....+.+.....+.+|...|.-+..+..+..+..++.+ ..+ + ++..++...+.|.+.+.......+..
T Consensus 52 ~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~---~~~----~---~~~~~~~~~~~g~~~~~~~~~~~~~~ 121 (395)
T PRK10054 52 ALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIP---LVN----N---VTLVVLFFALINCAYSVFSTVLKAWF 121 (395)
T ss_pred HHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHH---HHh----H---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555566778888776555555554444443332 211 1 33333333445555554444444443
Q ss_pred -ccCCHHHH----HHHHhhhhhHhHHHHHHH
Q 016029 122 -SFMTSELI----QSFLAGLAASGAITSALR 147 (396)
Q Consensus 122 -~~~p~~~~----~a~~~G~g~aGi~~s~~~ 147 (396)
-..|++.. +-...+.++++.++..+-
T Consensus 122 ~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~ 152 (395)
T PRK10054 122 ADNLSSTSKTKIFSLNYTMLNIGWTVGPPLG 152 (395)
T ss_pred HHhcCHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33454432 333445555555554443
No 86
>PRK09528 lacY galactoside permease; Reviewed
Probab=95.97 E-value=0.63 Score=46.62 Aligned_cols=58 Identities=12% Similarity=-0.003 Sum_probs=31.3
Q ss_pred CCchHHHHHHHHHhhccccccceeeeccCCCCCchhhhhhhhH-HHHHHHHHHHHHHHH
Q 016029 329 GDQGWMIMLTSFLGLSNGYLTVCVLTAAPKGYKGPEQNALGNL-LVLFLLGGIFAGATL 386 (396)
Q Consensus 329 ~~d~~~~i~~~lfgltnGyl~t~~mi~~p~~v~~~e~e~ag~~-~~~~l~~Gl~~Gs~~ 386 (396)
++.++.....++.|+..+-.....+.+.++..+++.+..+... .++.-.+|..+|..+
T Consensus 313 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~ 371 (420)
T PRK09528 313 TGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTL 371 (420)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHH
Confidence 4455555567777776666655555666666666555433222 233344455555444
No 87
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=95.88 E-value=2.1 Score=42.65 Aligned_cols=79 Identities=14% Similarity=0.189 Sum_probs=50.8
Q ss_pred ceeehhhhHHHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHHHHHhhhhhhhcc
Q 016029 36 RILTLVYQPFALITLAILAYHEAKIDTRRRIIFGYILFFASSLLVLVLDLATSGKGGLGTFIGICVISGAFGVADANVQG 115 (396)
Q Consensus 36 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~i~~~~~~~i~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~ 115 (396)
.+....|.++..+...+...+.+|++.|.=+..+..+..+..+... ... . . +..-++.|++.+....
T Consensus 41 ~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~---~~~------~-~---~~~r~l~G~~~a~~~p 107 (393)
T PRK11195 41 PLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLML---FGI------H-P---LLAYGLVGIGAAAYSP 107 (393)
T ss_pred HHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHH---HHH------H-H---HHHHHHHHHHHHHHHH
Confidence 3444557777667777777788998888777777776655443322 111 0 1 2233567999999999
Q ss_pred chhhcccc-CCHH
Q 016029 116 GMVGDLSF-MTSE 127 (396)
Q Consensus 116 s~~~la~~-~p~~ 127 (396)
...++... +|++
T Consensus 108 a~~a~i~~~~~~~ 120 (393)
T PRK11195 108 AKYGILTELLPGE 120 (393)
T ss_pred HHHHHHHHHcCHH
Confidence 98888654 6755
No 88
>PRK09848 glucuronide transporter; Provisional
Probab=95.48 E-value=3.3 Score=41.89 Aligned_cols=59 Identities=8% Similarity=0.046 Sum_probs=36.6
Q ss_pred hHHHHHHHHHhhccccccceeeeccCCCCCchh-------hhhhhhHHHHHHHHHHHHHHHHHHHH
Q 016029 332 GWMIMLTSFLGLSNGYLTVCVLTAAPKGYKGPE-------QNALGNLLVLFLLGGIFAGATLDWLW 390 (396)
Q Consensus 332 ~~~~i~~~lfgltnGyl~t~~mi~~p~~v~~~e-------~e~ag~~~~~~l~~Gl~~Gs~~s~~~ 390 (396)
++.++.+++.|+..|..........++.++++| +.....+.++.-.+|-.+|..+.-..
T Consensus 320 ~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~ 385 (448)
T PRK09848 320 PVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFI 385 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445677777776666655555555555443 24445677788778888887765443
No 89
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=95.48 E-value=2.4 Score=42.71 Aligned_cols=99 Identities=9% Similarity=-0.012 Sum_probs=55.0
Q ss_pred HHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHHHHHhhhhhhhccchhhcccc-CCHH
Q 016029 49 TLAILAYHEAKIDTRRRIIFGYILFFASSLLVLVLDLATSGKGGLGTFIGICVISGAFGVADANVQGGMVGDLSF-MTSE 127 (396)
Q Consensus 49 ~~~~~~~~~~~~~~~~Ri~~~~~~~~i~~~~~~~i~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la~~-~p~~ 127 (396)
+.++...+.+|+..|+=+..+..++.+.++.....+... +.+...+...++.=++.|++.|........+.+. .|++
T Consensus 79 g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~ 156 (432)
T PRK10406 79 GGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYE--TIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEG 156 (432)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCch--hHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCC
Confidence 344555678888777766777777766665543222110 0011122334445567888888777777777654 4544
Q ss_pred ----HHHHHHhhhhhHhHHHHHHHHH
Q 016029 128 ----LIQSFLAGLAASGAITSALRLI 149 (396)
Q Consensus 128 ----~~~a~~~G~g~aGi~~s~~~ii 149 (396)
+......|+..+.+++.++..+
T Consensus 157 ~rg~~~~~~~~~~~~G~~~~~~~~~~ 182 (432)
T PRK10406 157 RKGFYASFQYVTLIGGQLLALLVVVV 182 (432)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445665555555554433
No 90
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=95.23 E-value=2.8 Score=44.47 Aligned_cols=108 Identities=15% Similarity=0.017 Sum_probs=63.5
Q ss_pred HHHHHhhhhhhhhccccccccCCcchH-HHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHhhccccccceeeeccCCCC
Q 016029 282 AMYNVGDLIGRYIPLLKFFKLESRKYI-TAATLSRFLLVPAFYFTAKYGDQGWMIMLTSFLGLSNGYLTVCVLTAAPKGY 360 (396)
Q Consensus 282 ~~fn~gD~iGR~l~~~~~~~~~~~~~l-~i~sl~R~~fiplfll~~~~~~d~~~~i~~~lfgltnGyl~t~~mi~~p~~v 360 (396)
..+++|=..|-.+.....-+.++.|+. .+.++...+++-.....+..+.+.+ +.+.++-|+--|+....++..+.-.+
T Consensus 356 ~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~~~n~~~~-i~~~~l~g~giG~~~~~~~~~~ql~~ 434 (599)
T PF06609_consen 356 SPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVRPDNKNAA-IAFLVLAGFGIGGILVPAIVIAQLIV 434 (599)
T ss_pred hhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHccCCCcchH-HHHHHHHHHhHHHHHHHHHHeeEeee
Confidence 345555555544332211111233443 3444445555555444444333333 34677888888999888888776677
Q ss_pred CchhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 016029 361 KGPEQNALGNLLVLFLLGGIFAGATLDWLW 390 (396)
Q Consensus 361 ~~~e~e~ag~~~~~~l~~Gl~~Gs~~s~~~ 390 (396)
++++-..+..++...=.+|=++|..+..-.
T Consensus 435 p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I 464 (599)
T PF06609_consen 435 PDEDIGTATGLTGSIRSIGGSIGYAIYNAI 464 (599)
T ss_pred CchHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 777777777777777777777777665443
No 91
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=95.12 E-value=0.095 Score=52.46 Aligned_cols=109 Identities=18% Similarity=0.128 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHhhhhhhhhccccccccCCcchHHHHHHHHHHHHHHHHhh---cccCCchHHHHHHHHHhhcccccccee
Q 016029 276 YAVVLIAMYNVGDLIGRYIPLLKFFKLESRKYITAATLSRFLLVPAFYFT---AKYGDQGWMIMLTSFLGLSNGYLTVCV 352 (396)
Q Consensus 276 ~~~~~~~~fn~gD~iGR~l~~~~~~~~~~~~~l~i~sl~R~~fiplfll~---~~~~~d~~~~i~~~lfgltnGyl~t~~ 352 (396)
..-.....+.++-.+|....+...=+. ++|...+...+ ++..-.+++ ....+.+..++..++.|+..|-.....
T Consensus 72 ~~~~~~~~~~~~~~i~~~~~g~l~d~~-grr~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~ 148 (481)
T TIGR00879 72 LWGLVVSIFLVGGFIGALFAGWLSDRF-GRKKSLLIIAL--LFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALV 148 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHhhhhh-hhHHHHHHHHH--HHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHH
Confidence 344556677777777776665421122 34444333332 222222222 111222355556888999888777777
Q ss_pred eeccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHH
Q 016029 353 LTAAPKGYKGPEQNALGNLLVLFLLGGIFAGATLD 387 (396)
Q Consensus 353 mi~~p~~v~~~e~e~ag~~~~~~l~~Gl~~Gs~~s 387 (396)
..+..+..++++|..+..+......+|..+|..++
T Consensus 149 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~ 183 (481)
T TIGR00879 149 PMYLSEIAPKALRGALTSLYQLAITFGILVAYGFG 183 (481)
T ss_pred HHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 77777888889999999999888999999999888
No 92
>PRK15075 citrate-proton symporter; Provisional
Probab=95.09 E-value=1.2 Score=44.96 Aligned_cols=96 Identities=15% Similarity=0.101 Sum_probs=47.1
Q ss_pred HHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHHHHHhhhhhhhccchhhcc-ccCCHH-
Q 016029 50 LAILAYHEAKIDTRRRIIFGYILFFASSLLVLVLDLATSGKGGLGTFIGICVISGAFGVADANVQGGMVGDL-SFMTSE- 127 (396)
Q Consensus 50 ~~~~~~~~~~~~~~~Ri~~~~~~~~i~~~~~~~i~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la-~~~p~~- 127 (396)
.++...+.+|+..|+-+..+..+..+..++....+... ..+.......++.-++.|++.+..-.....+. ..+|++
T Consensus 73 ~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~ 150 (434)
T PRK15075 73 AIVLGAYIDRVGRRKGLIVTLSIMASGTLLIAFVPGYA--TIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGR 150 (434)
T ss_pred HHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhCCcHH--HHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCccc
Confidence 44556778899888777777777666655543221100 00000011223444566766665444444443 445644
Q ss_pred ---HHHHHHhhhhhHhHHHHHHH
Q 016029 128 ---LIQSFLAGLAASGAITSALR 147 (396)
Q Consensus 128 ---~~~a~~~G~g~aGi~~s~~~ 147 (396)
.+.....++.++..++..+-
T Consensus 151 rg~~~~~~~~~~~~g~~~g~~~g 173 (434)
T PRK15075 151 KGFYTSWQSASQQVAVVFAALLG 173 (434)
T ss_pred chHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444555554444433
No 93
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=94.76 E-value=1.3 Score=47.53 Aligned_cols=127 Identities=13% Similarity=0.027 Sum_probs=72.9
Q ss_pred hHHHHhhhcCCCC-CcceeehhhhHHHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhhc-------------
Q 016029 21 VVDYYVFLFPQYH-PSRILTLVYQPFALITLAILAYHEAKIDTRRRIIFGYILFFASSLLVLVLDLA------------- 86 (396)
Q Consensus 21 a~~Yf~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~i~~~~~~~i~~~------------- 86 (396)
+.+-...+|.-++ -..++...|.+...+..+....+.+|.+.++=+..+.+++.+..++...-...
T Consensus 55 ~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~ 134 (633)
T TIGR00805 55 SLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSST 134 (633)
T ss_pred hchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCcccccccccc
Confidence 3345555554221 22455666888888888888888888776555556777766665554321100
Q ss_pred -------------c-------------CCCCC--chHHHHHHHHHHHHhhhhhhhccchhhcccc-CC----HHHHHHHH
Q 016029 87 -------------T-------------SGKGG--LGTFIGICVISGAFGVADANVQGGMVGDLSF-MT----SELIQSFL 133 (396)
Q Consensus 87 -------------~-------------~~~~~--~~~f~~~l~~~~~~g~~~~~~q~s~~~la~~-~p----~~~~~a~~ 133 (396)
. ..... ...+...++.-++.|++.+.......++... +| +++.+.+.
T Consensus 135 ~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~ 214 (633)
T TIGR00805 135 GNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILE 214 (633)
T ss_pred ccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHH
Confidence 0 00000 0124445566778888888877777777554 34 33556666
Q ss_pred hhhhhHhHHHHHHH
Q 016029 134 AGLAASGAITSALR 147 (396)
Q Consensus 134 ~G~g~aGi~~s~~~ 147 (396)
++..++..++.++-
T Consensus 215 ~~~~iG~~lG~llg 228 (633)
T TIGR00805 215 SIAVFGPAFGYLLG 228 (633)
T ss_pred HHHHhhhHHHHHHH
Confidence 66666666655544
No 94
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=94.69 E-value=4 Score=42.23 Aligned_cols=58 Identities=9% Similarity=0.095 Sum_probs=49.6
Q ss_pred CchHHHHHHHHHhhccccccceeeeccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHH
Q 016029 330 DQGWMIMLTSFLGLSNGYLTVCVLTAAPKGYKGPEQNALGNLLVLFLLGGIFAGATLD 387 (396)
Q Consensus 330 ~d~~~~i~~~lfgltnGyl~t~~mi~~p~~v~~~e~e~ag~~~~~~l~~Gl~~Gs~~s 387 (396)
+.||.+...++.|+..+......+..+-+.+|++.+..+..+..+...+|-.+|+.++
T Consensus 378 s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~ 435 (489)
T PRK10207 378 SPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVA 435 (489)
T ss_pred CHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777789999999999999888888888888888888888888888999988776
No 95
>PRK12382 putative transporter; Provisional
Probab=94.67 E-value=0.13 Score=50.95 Aligned_cols=155 Identities=15% Similarity=0.058 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHhhhhccccCceEeeccCCCCCCchHHHHHHHHHHHhhhhhhhhccccccccCCcchHHHH-HHHHHHHH
Q 016029 241 NIDYAIDMFVIYTLTLSIFPGFLSEDTGSHSLGGWYAVVLIAMYNVGDLIGRYIPLLKFFKLESRKYITAA-TLSRFLLV 319 (396)
Q Consensus 241 i~~~~~~~~l~f~vTl~vFP~i~~~~~~~~~~~~w~~~~~~~~fn~gD~iGR~l~~~~~~~~~~~~~l~i~-sl~R~~fi 319 (396)
.+...+..++.++..-...|-+.....++...+++..-.....+.++..+++...+...=+. ++|+++.. .++..+..
T Consensus 17 ~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~~~~~~ 95 (392)
T PRK12382 17 LFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQY-GAKRSALQGMLACGLAG 95 (392)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhh-cchHHHHHHHHHHHHHH
Confidence 34455555555554444455443211111122345555667788888888776655421122 34444333 33333322
Q ss_pred HHHHhhccc----CCc-hHHHHHHHHHhhccccccceeeeccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhcC
Q 016029 320 PAFYFTAKY----GDQ-GWMIMLTSFLGLSNGYLTVCVLTAAPKGYKGPEQNALGNLLVLFLLGGIFAGATLDWLWLIGK 394 (396)
Q Consensus 320 plfll~~~~----~~d-~~~~i~~~lfgltnGyl~t~~mi~~p~~v~~~e~e~ag~~~~~~l~~Gl~~Gs~~s~~~~~~~ 394 (396)
-.+.++... .++ +...+.-++.|+..|...+..+...++..++|||..+-.........|..+|..++-...-..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~ 175 (392)
T PRK12382 96 LAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHF 175 (392)
T ss_pred HHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 223333222 123 333445678888877666656666677888889988888888888888888888765544333
Q ss_pred CC
Q 016029 395 GW 396 (396)
Q Consensus 395 ~~ 396 (396)
||
T Consensus 176 g~ 177 (392)
T PRK12382 176 GF 177 (392)
T ss_pred Ch
Confidence 44
No 96
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=94.49 E-value=0.12 Score=49.40 Aligned_cols=112 Identities=16% Similarity=0.135 Sum_probs=77.1
Q ss_pred HHHHHHHHHHhhhhhhhhccccccccCCcchHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHhhccccccceeeecc
Q 016029 277 AVVLIAMYNVGDLIGRYIPLLKFFKLESRKYITAATLSRFLLVPAFYFTAKYGDQGWMIMLTSFLGLSNGYLTVCVLTAA 356 (396)
Q Consensus 277 ~~~~~~~fn~gD~iGR~l~~~~~~~~~~~~~l~i~sl~R~~fiplfll~~~~~~d~~~~i~~~lfgltnGyl~t~~mi~~ 356 (396)
.-.....+.+++.+++...+...=+..++|.+.+..+...+...+..++ ++.+...+..++.|+..|........+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 112 (352)
T cd06174 36 AGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFA---SSLWLLLVGRFLLGLGGGALYPAAAALI 112 (352)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHcccccccHhHHHHH
Confidence 4455677778888877665442112233445555555555554444333 4445556678889999988888888888
Q ss_pred CCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 016029 357 PKGYKGPEQNALGNLLVLFLLGGIFAGATLDWLWL 391 (396)
Q Consensus 357 p~~v~~~e~e~ag~~~~~~l~~Gl~~Gs~~s~~~~ 391 (396)
++..++|||..+..+.......|..+|..++-.+.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 147 (352)
T cd06174 113 AEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLA 147 (352)
T ss_pred HHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 88888899999999999888999888887776543
No 97
>PRK11462 putative transporter; Provisional
Probab=94.46 E-value=6.6 Score=40.17 Aligned_cols=43 Identities=14% Similarity=0.039 Sum_probs=26.6
Q ss_pred HHhhhhhhhccchhhccccCCHH------HHHHHHhhhhhHhHHHHHHH
Q 016029 105 AFGVADANVQGGMVGDLSFMTSE------LIQSFLAGLAASGAITSALR 147 (396)
Q Consensus 105 ~~g~~~~~~q~s~~~la~~~p~~------~~~a~~~G~g~aGi~~s~~~ 147 (396)
+...+-+..+-..-++.+.+.++ .+..-+.|..+++.+++++-
T Consensus 118 ~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~ 166 (460)
T PRK11462 118 LLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLM 166 (460)
T ss_pred HHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667777777777777776542 33445566666666665553
No 98
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.31 E-value=0.38 Score=48.11 Aligned_cols=77 Identities=14% Similarity=0.146 Sum_probs=59.8
Q ss_pred HhhccCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHHHHHhhhhhhhccchhhc-cccCCHHHHHHHH
Q 016029 55 YHEAKIDTRRRIIFGYILFFASSLLVLVLDLATSGKGGLGTFIGICVISGAFGVADANVQGGMVGD-LSFMTSELIQSFL 133 (396)
Q Consensus 55 ~~~~~~~~~~Ri~~~~~~~~i~~~~~~~i~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~l-a~~~p~~~~~a~~ 133 (396)
.+.+|+.++.-++.|+++++..++++..-+. |...++.=.+-|++++....+.+++ |..||++.-.+-.
T Consensus 128 ~l~~~iGy~ipm~~Gl~vmf~sTilFafg~s----------y~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~er~~v 197 (464)
T KOG3764|consen 128 NLIDRIGYKIPMVAGLFVMFLSTILFAFGNS----------YPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNERGSV 197 (464)
T ss_pred hhHHHhccccHHHHHHHHHHHHHHHHHHcch----------hHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchhhhHH
Confidence 4567899999999999999999988753331 5555566688999999999999999 6679998876666
Q ss_pred hhhhhHhH
Q 016029 134 AGLAASGA 141 (396)
Q Consensus 134 ~G~g~aGi 141 (396)
.|...+++
T Consensus 198 mGialgfi 205 (464)
T KOG3764|consen 198 MGIALGFI 205 (464)
T ss_pred HHHHHHHH
Confidence 66655543
No 99
>PF13347 MFS_2: MFS/sugar transport protein
Probab=94.23 E-value=0.57 Score=47.21 Aligned_cols=106 Identities=14% Similarity=0.133 Sum_probs=70.1
Q ss_pred hhhhhhHhhchHHHHhhhc-CCCCCcceeehhhhHHHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhhccCC
Q 016029 11 CLFSWNSMLTVVDYYVFLF-PQYHPSRILTLVYQPFALITLAILAYHEAKIDTRRRIIFGYILFFASSLLVLVLDLATSG 89 (396)
Q Consensus 11 ~LlpwN~~ita~~Yf~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~i~~~~~~~i~~~~~~ 89 (396)
..+.|+...+...||..+. .+.+....+...+.++.++...+..++.+|++.+.-+..+..+..+..+.+..++.
T Consensus 237 ~~~~~~~~~~~~~y~~~~vl~~~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~---- 312 (428)
T PF13347_consen 237 QWLAFALMNTFLPYYFTYVLGNEGLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGP---- 312 (428)
T ss_pred HHhhhhhhhhHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHh----
Confidence 3456666666667776554 43334455555677777777777788999998887777788777776666544432
Q ss_pred CCCchHHHHHHHHHHHHhhhhhhhccchhhccccC
Q 016029 90 KGGLGTFIGICVISGAFGVADANVQGGMVGDLSFM 124 (396)
Q Consensus 90 ~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la~~~ 124 (396)
...+..++..++.|++.+.......++.+..
T Consensus 313 ----~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~ 343 (428)
T PF13347_consen 313 ----GSPWLVLILFILAGIGYGAFFVIPWAMLADV 343 (428)
T ss_pred ----hhHHHHHHHHHHhHhhhcccccccccccccc
Confidence 1145556667777888887777777765543
No 100
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=94.19 E-value=6.9 Score=39.34 Aligned_cols=76 Identities=21% Similarity=0.253 Sum_probs=46.1
Q ss_pred HHHHHHHHHhhhhhhhhcccccccc-CCcchHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHhhccccccceee
Q 016029 278 VVLIAMYNVGDLIGRYIPLLKFFKL-ESRKYITAATLSRFLLVPAFYFTAKYGDQGWMIMLTSFLGLSNGYLTVCVL 353 (396)
Q Consensus 278 ~~~~~~fn~gD~iGR~l~~~~~~~~-~~~~~l~i~sl~R~~fiplfll~~~~~~d~~~~i~~~lfgltnGyl~t~~m 353 (396)
.-+...+..|-++|-.+..+...+. .+.+...+.+..=.+-.-+.+++....+.+.+..-++++|+.||.++..+.
T Consensus 247 T~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~G~f~vgal 323 (403)
T PF03209_consen 247 TRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGNGLFTVGAL 323 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhhHHHHHHH
Confidence 4557788888888887765532221 122222233333333333445555666777777789999999999886553
No 101
>PRK10429 melibiose:sodium symporter; Provisional
Probab=94.10 E-value=7.9 Score=39.62 Aligned_cols=47 Identities=13% Similarity=0.123 Sum_probs=28.1
Q ss_pred HHHHHHHhhhhhhhccchhhccccCCH----HH-HHHH-HhhhhhHhHHHHHH
Q 016029 100 CVISGAFGVADANVQGGMVGDLSFMTS----EL-IQSF-LAGLAASGAITSAL 146 (396)
Q Consensus 100 l~~~~~~g~~~~~~q~s~~~la~~~p~----~~-~~a~-~~G~g~aGi~~s~~ 146 (396)
++...+.+.+.++.+....++.+.+.+ |. ..++ +.+.+++|++.+.+
T Consensus 110 ~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~ 162 (473)
T PRK10429 110 CVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGF 162 (473)
T ss_pred HHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445677777777777777666542 21 1334 56667777776544
No 102
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=93.87 E-value=1.9 Score=43.40 Aligned_cols=107 Identities=9% Similarity=0.040 Sum_probs=60.3
Q ss_pred HHHHHHHHHhhhhhhhhccccccccCCcchHH-HHHHHHHHHHHHHHhhcccCC---chHHHHHHHHHhhccccccceee
Q 016029 278 VVLIAMYNVGDLIGRYIPLLKFFKLESRKYIT-AATLSRFLLVPAFYFTAKYGD---QGWMIMLTSFLGLSNGYLTVCVL 353 (396)
Q Consensus 278 ~~~~~~fn~gD~iGR~l~~~~~~~~~~~~~l~-i~sl~R~~fiplfll~~~~~~---d~~~~i~~~lfgltnGyl~t~~m 353 (396)
-....+..+++.+|+....... .+.++|.+. +..++-.+...++.. ..++ .+..++.+++.|+..|.......
T Consensus 254 g~~~~~~~i~~i~~~~~~g~l~-dr~g~r~~l~~~~~~~~v~~~l~~~--~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~ 330 (418)
T TIGR00889 254 SIWMSLSQFSEIFFILTIPFFL-KRFGIKKVMLLSLVAWALRFGFFAY--GDPEYFGYALLFLSMIVYGCAFDFFNISGS 330 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhCcHHHHHHHHHHHHHHHHHHHH--cCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677778888876654321 112334333 333222222222222 1111 12234457888888887766667
Q ss_pred eccCCCCCchhhhhhhhHHH-HHHHHHHHHHHHHH
Q 016029 354 TAAPKGYKGPEQNALGNLLV-LFLLGGIFAGATLD 387 (396)
Q Consensus 354 i~~p~~v~~~e~e~ag~~~~-~~l~~Gl~~Gs~~s 387 (396)
.+..+..++++|..+-.+.. ....+|..+|..++
T Consensus 331 ~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~ 365 (418)
T TIGR00889 331 VFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILS 365 (418)
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 77777788888877766665 45567777776665
No 103
>PRK09848 glucuronide transporter; Provisional
Probab=93.82 E-value=1 Score=45.64 Aligned_cols=69 Identities=12% Similarity=0.043 Sum_probs=39.8
Q ss_pred HHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHHHHHhhhhhhhccchhhccccC
Q 016029 48 ITLAILAYHEAKIDTRRRIIFGYILFFASSLLVLVLDLATSGKGGLGTFIGICVISGAFGVADANVQGGMVGDLSFM 124 (396)
Q Consensus 48 ~~~~~~~~~~~~~~~~~Ri~~~~~~~~i~~~~~~~i~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la~~~ 124 (396)
+...+..++.+|.+.+.-+..+.++..+..+.+. ..+ ...++.......+.|++.+..+....++.+..
T Consensus 279 ~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~---~~~-----~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~ 347 (448)
T PRK09848 279 ASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFF---WVS-----VWSLPVALVALAIASIGQGVTMTVMWALEADT 347 (448)
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHH---HcC-----chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555677888777666667666555444332 111 01134444445567778888877777775543
No 104
>TIGR00895 2A0115 benzoate transport.
Probab=93.47 E-value=0.33 Score=47.36 Aligned_cols=109 Identities=15% Similarity=-0.014 Sum_probs=67.7
Q ss_pred HHHHHHHHHhhhhhhhhccccccccCCcchHHHHH-HHHHHHHHHHHhhcccCCchHHHHHHHHHhhccccccceeeecc
Q 016029 278 VVLIAMYNVGDLIGRYIPLLKFFKLESRKYITAAT-LSRFLLVPAFYFTAKYGDQGWMIMLTSFLGLSNGYLTVCVLTAA 356 (396)
Q Consensus 278 ~~~~~~fn~gD~iGR~l~~~~~~~~~~~~~l~i~s-l~R~~fiplfll~~~~~~d~~~~i~~~lfgltnGyl~t~~mi~~ 356 (396)
-.....+.++..+|..+.....=+. ++|...... ++-.+ ..+++...++.+..++..++.|+..|........+.
T Consensus 55 ~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 130 (398)
T TIGR00895 55 GFLFSAGLIGMAFGALFFGPLADRI-GRKRVLLWSILLFSV---FTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALV 130 (398)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHh-hhHHHHHHHHHHHHH---HHHHHHHccchHHHHHHHHHHhcccccchhhHHHHH
Confidence 3456677777777776654421122 334333222 22222 122222223444555668889998888777777777
Q ss_pred CCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 016029 357 PKGYKGPEQNALGNLLVLFLLGGIFAGATLDWLW 390 (396)
Q Consensus 357 p~~v~~~e~e~ag~~~~~~l~~Gl~~Gs~~s~~~ 390 (396)
.+..++++|..+..+......+|..+|..++-.+
T Consensus 131 ~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l 164 (398)
T TIGR00895 131 SEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWL 164 (398)
T ss_pred HHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHH
Confidence 7777888898888888888888888888776433
No 105
>PRK09669 putative symporter YagG; Provisional
Probab=93.39 E-value=0.55 Score=47.59 Aligned_cols=75 Identities=13% Similarity=0.030 Sum_probs=39.0
Q ss_pred hhHHHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHHHHHhhhhhhhccchhhcc
Q 016029 42 YQPFALITLAILAYHEAKIDTRRRIIFGYILFFASSLLVLVLDLATSGKGGLGTFIGICVISGAFGVADANVQGGMVGDL 121 (396)
Q Consensus 42 ~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~i~~~~~~~i~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la 121 (396)
..++.++...+..++.+|++.+.....+..+..+....+...+ . ...+..++..++.|++.+..+....++.
T Consensus 273 ~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~--~------~~~~~~~~~~~i~g~~~~~~~~~~~am~ 344 (444)
T PRK09669 273 GMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIP--P------SNVWLIFALNILFNFIQNLTTPLQWSMF 344 (444)
T ss_pred HHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhC--c------chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555677887655444444443333222221111 1 1144445555677888887777777776
Q ss_pred ccC
Q 016029 122 SFM 124 (396)
Q Consensus 122 ~~~ 124 (396)
+..
T Consensus 345 ad~ 347 (444)
T PRK09669 345 SDV 347 (444)
T ss_pred Hhh
Confidence 544
No 106
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=93.30 E-value=0.22 Score=49.85 Aligned_cols=147 Identities=12% Similarity=-0.011 Sum_probs=79.3
Q ss_pred HHHHHHHHHHhhhhccccCceEeeccCCCCCCchHHHHHHHHHHHhhhhhhhhccccccccCCcchHHHHHHHHHHHHHH
Q 016029 242 IDYAIDMFVIYTLTLSIFPGFLSEDTGSHSLGGWYAVVLIAMYNVGDLIGRYIPLLKFFKLESRKYITAATLSRFLLVPA 321 (396)
Q Consensus 242 ~~~~~~~~l~f~vTl~vFP~i~~~~~~~~~~~~w~~~~~~~~fn~gD~iGR~l~~~~~~~~~~~~~l~i~sl~R~~fipl 321 (396)
+......++..+....++|-+.....+....++...-....++++.+.+.+...+...=+...++.+.+..++..+..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~-- 90 (400)
T PRK11646 13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGF-- 90 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHH--
Confidence 334445555555555566665422111111122333344556666665554443321112222333333333333322
Q ss_pred HHhhcccCCchHHHHHHHHHhhccccccceeeeccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 016029 322 FYFTAKYGDQGWMIMLTSFLGLSNGYLTVCVLTAAPKGYKGPEQNALGNLLVLFLLGGIFAGATLDWLWL 391 (396)
Q Consensus 322 fll~~~~~~d~~~~i~~~lfgltnGyl~t~~mi~~p~~v~~~e~e~ag~~~~~~l~~Gl~~Gs~~s~~~~ 391 (396)
+++...++.++.++..++.|+.+|..........++..++|+|..+-.+.......|..+|..++-.+.
T Consensus 91 -~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~ 159 (400)
T PRK11646 91 -ATMAIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL 159 (400)
T ss_pred -HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222223445556666788898887766555455567777888988888888888888888877764443
No 107
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=93.21 E-value=7.2 Score=40.02 Aligned_cols=60 Identities=12% Similarity=-0.041 Sum_probs=37.9
Q ss_pred CchH-HHHHHHHHhhccccccceeeeccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 016029 330 DQGW-MIMLTSFLGLSNGYLTVCVLTAAPKGYKGPEQNALGNLLVLFLLGGIFAGATLDWL 389 (396)
Q Consensus 330 ~d~~-~~i~~~lfgltnGyl~t~~mi~~p~~v~~~e~e~ag~~~~~~l~~Gl~~Gs~~s~~ 389 (396)
+|.+ .....++.++..|....-.+.+.-+.++++++...=.+.+...++|-.+|+.++-.
T Consensus 349 ~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~ 409 (468)
T TIGR00788 349 SDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVL 409 (468)
T ss_pred CCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHH
Confidence 3443 33457888888887777667777777776665544444444457777777765543
No 108
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=93.12 E-value=0.27 Score=48.79 Aligned_cols=150 Identities=10% Similarity=-0.005 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHhhhhccccCceEeeccCCCCCCchHHHHHHHHHHHhhhhhhhhccccccccCCcchHHHHH-HHHHHHH
Q 016029 241 NIDYAIDMFVIYTLTLSIFPGFLSEDTGSHSLGGWYAVVLIAMYNVGDLIGRYIPLLKFFKLESRKYITAAT-LSRFLLV 319 (396)
Q Consensus 241 i~~~~~~~~l~f~vTl~vFP~i~~~~~~~~~~~~w~~~~~~~~fn~gD~iGR~l~~~~~~~~~~~~~l~i~s-l~R~~fi 319 (396)
.....+..++.++-.-+..|.+.....+....++...-....++.++..++....+...=+ .++|.+.+.+ ++..+..
T Consensus 17 ~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr-~g~r~~l~~~~~~~~~~~ 95 (399)
T PRK05122 17 IVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADT-LGPKKAVVFGLCGCALSG 95 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhc-cCCcchHHHHHHHHHHHH
Confidence 3334444444444433344443322211111123334455677788888877665542112 2444444333 3343332
Q ss_pred HHHHhhcccC----Cch-HHHHHHHHHhhccccccceeeeccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 016029 320 PAFYFTAKYG----DQG-WMIMLTSFLGLSNGYLTVCVLTAAPKGYKGPEQNALGNLLVLFLLGGIFAGATLDWLWL 391 (396)
Q Consensus 320 plfll~~~~~----~d~-~~~i~~~lfgltnGyl~t~~mi~~p~~v~~~e~e~ag~~~~~~l~~Gl~~Gs~~s~~~~ 391 (396)
....+....+ .+. ..++.-++.|+..|..........++..++++|..+..+.......|..+|..++-..+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~ 172 (399)
T PRK05122 96 LLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLY 172 (399)
T ss_pred HHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHH
Confidence 2222222111 122 33445788898888776666666677788888888877777777778887777765443
No 109
>TIGR00893 2A0114 d-galactonate transporter.
Probab=92.83 E-value=0.33 Score=46.95 Aligned_cols=112 Identities=13% Similarity=0.099 Sum_probs=71.5
Q ss_pred HHHHHHHHHhhhhhhhhccccccccCCcchHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHhhccccccceeeeccC
Q 016029 278 VVLIAMYNVGDLIGRYIPLLKFFKLESRKYITAATLSRFLLVPAFYFTAKYGDQGWMIMLTSFLGLSNGYLTVCVLTAAP 357 (396)
Q Consensus 278 ~~~~~~fn~gD~iGR~l~~~~~~~~~~~~~l~i~sl~R~~fiplfll~~~~~~d~~~~i~~~lfgltnGyl~t~~mi~~p 357 (396)
-.....+.++..+++...+...=+..+++.+.+..+...+...+ +...++-+...+..++.|+..|...+....+.+
T Consensus 32 ~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~ 108 (399)
T TIGR00893 32 GYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGL---QAFAGAYVSLYILRVLLGAAEAPFFPGIILIVA 108 (399)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHH---HHHHcCHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 34566777777777766544211222233333333322222222 222234555566788999999888887778888
Q ss_pred CCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 016029 358 KGYKGPEQNALGNLLVLFLLGGIFAGATLDWLWLI 392 (396)
Q Consensus 358 ~~v~~~e~e~ag~~~~~~l~~Gl~~Gs~~s~~~~~ 392 (396)
+..++++|..+..+.......|..+|..++-.+.-
T Consensus 109 ~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 143 (399)
T TIGR00893 109 SWFPASERATAVSIFNSAQGLGGIIGGPLVGWILI 143 (399)
T ss_pred HhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH
Confidence 88888999999888888888898888877665443
No 110
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=92.69 E-value=2.1 Score=43.97 Aligned_cols=31 Identities=16% Similarity=0.243 Sum_probs=20.3
Q ss_pred HHHHHHHhhhhhhhccchhhccccCCHHHHH
Q 016029 100 CVISGAFGVADANVQGGMVGDLSFMTSELIQ 130 (396)
Q Consensus 100 l~~~~~~g~~~~~~q~s~~~la~~~p~~~~~ 130 (396)
....++.+.+.+..++..+++...+++++.+
T Consensus 352 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g 382 (476)
T PLN00028 352 IVVMILFSIFVQAACGATFGIVPFVSRRSLG 382 (476)
T ss_pred HHHHHHHHHHHHHhhhhhcccCcccChhhch
Confidence 3344455666666777788887777777543
No 111
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=92.67 E-value=0.38 Score=46.28 Aligned_cols=115 Identities=16% Similarity=0.073 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHhhhhhhhhccccccccCCcch-HHHHHHHHHHHHHHHHhhcccC--CchHHHHHHHHHhhcccccccee
Q 016029 276 YAVVLIAMYNVGDLIGRYIPLLKFFKLESRKY-ITAATLSRFLLVPAFYFTAKYG--DQGWMIMLTSFLGLSNGYLTVCV 352 (396)
Q Consensus 276 ~~~~~~~~fn~gD~iGR~l~~~~~~~~~~~~~-l~i~sl~R~~fiplfll~~~~~--~d~~~~i~~~lfgltnGyl~t~~ 352 (396)
..-.....+.++..++....+...=+. ++|+ +.+..++..+..-+.......+ +.+...+..++.|+.+|......
T Consensus 35 ~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 113 (365)
T TIGR00900 35 VLSLAALAGMLPYVVLSPIAGALADRY-DRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTPAY 113 (365)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHhh-chhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456677777777766544321122 3344 3333344433333222222222 44555567888899998887777
Q ss_pred eeccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 016029 353 LTAAPKGYKGPEQNALGNLLVLFLLGGIFAGATLDWLWL 391 (396)
Q Consensus 353 mi~~p~~v~~~e~e~ag~~~~~~l~~Gl~~Gs~~s~~~~ 391 (396)
..+.++..+++||..+-.+......+|..+|..++-.+.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~ 152 (365)
T TIGR00900 114 QAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMY 152 (365)
T ss_pred HHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 777888888899999999999999999888887765554
No 112
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=92.63 E-value=0.29 Score=39.73 Aligned_cols=62 Identities=15% Similarity=0.130 Sum_probs=48.0
Q ss_pred CCchHHHHHHHHHhhccccccceeeeccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 016029 329 GDQGWMIMLTSFLGLSNGYLTVCVLTAAPKGYKGPEQNALGNLLVLFLLGGIFAGATLDWLW 390 (396)
Q Consensus 329 ~~d~~~~i~~~lfgltnGyl~t~~mi~~p~~v~~~e~e~ag~~~~~~l~~Gl~~Gs~~s~~~ 390 (396)
++.+...+..++.|+..|........+.++..++++|..+..+.......|..+|..++-..
T Consensus 49 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 110 (141)
T TIGR00880 49 SNITVLIIARFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVL 110 (141)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHH
Confidence 34455556789999999988877777778888888898888888888888888877665543
No 113
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=91.81 E-value=1.1 Score=43.59 Aligned_cols=110 Identities=13% Similarity=0.048 Sum_probs=66.9
Q ss_pred HHHHHHHHHhhhhhhhhccccccccCCcchHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHhhccccccceeeeccC
Q 016029 278 VVLIAMYNVGDLIGRYIPLLKFFKLESRKYITAATLSRFLLVPAFYFTAKYGDQGWMIMLTSFLGLSNGYLTVCVLTAAP 357 (396)
Q Consensus 278 ~~~~~~fn~gD~iGR~l~~~~~~~~~~~~~l~i~sl~R~~fiplfll~~~~~~d~~~~i~~~lfgltnGyl~t~~mi~~p 357 (396)
-.....+.++..+|....+...=+. ++|..... .-.+.....+++...++.+..++..++.|+..|...+......+
T Consensus 43 g~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~ 119 (385)
T TIGR00710 43 QMTLTLYLLGFAAGQLLWGPLSDRY-GRRPVLLL--GLFIFALSSLGLALSNNIETLLVLRFVQAFGASAGSVISQALVR 119 (385)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHH--HHHHHHHHHHHHHHHccHHHHHHHHHHHHcchhHHHHHHHHHHH
Confidence 3446677777777776655421122 33433222 12222222222222344555566688889888877777666777
Q ss_pred CCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 016029 358 KGYKGPEQNALGNLLVLFLLGGIFAGATLDWLW 390 (396)
Q Consensus 358 ~~v~~~e~e~ag~~~~~~l~~Gl~~Gs~~s~~~ 390 (396)
+..++++|..+-.+.......|..+|..++-.+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l 152 (385)
T TIGR00710 120 DIYPGEELSRIYSILMPVLALAPAVAPLLGGYI 152 (385)
T ss_pred HhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777888888888888777888877877766543
No 114
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=91.57 E-value=0.76 Score=45.85 Aligned_cols=107 Identities=7% Similarity=0.007 Sum_probs=67.7
Q ss_pred HHHHHHhhhhhhhhccccccccCCcchHH-HHHHHHHHHHHHHHhhcccCCchHHHHHHHHHhhccccccceeeeccCCC
Q 016029 281 IAMYNVGDLIGRYIPLLKFFKLESRKYIT-AATLSRFLLVPAFYFTAKYGDQGWMIMLTSFLGLSNGYLTVCVLTAAPKG 359 (396)
Q Consensus 281 ~~~fn~gD~iGR~l~~~~~~~~~~~~~l~-i~sl~R~~fiplfll~~~~~~d~~~~i~~~lfgltnGyl~t~~mi~~p~~ 359 (396)
...+.++-.+|+....... .+.++|.+. ...++.. ...+++...++-+..++.-++.|+.+|-.........++.
T Consensus 61 ~~~~~~~~~~~~~~~g~l~-Dr~grr~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~ 136 (394)
T PRK10213 61 VTVTAFVAMFASLFITQTI-QATDRRYVVILFAVLLT---LSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRL 136 (394)
T ss_pred HHHHHHHHHHHHHHHHHHh-cccCcHHHHHHHHHHHH---HHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4466667777766554311 112344433 3333332 2334444445566666678999999988777777777888
Q ss_pred CCchhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 016029 360 YKGPEQNALGNLLVLFLLGGIFAGATLDWLWL 391 (396)
Q Consensus 360 v~~~e~e~ag~~~~~~l~~Gl~~Gs~~s~~~~ 391 (396)
.++++|..+-.+......+|..+|..++-.+.
T Consensus 137 ~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~ 168 (394)
T PRK10213 137 VPPRTVPKALSVIFGAVSIALVIAAPLGSFLG 168 (394)
T ss_pred cCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888877777777788877777765443
No 115
>TIGR00898 2A0119 cation transport protein.
Probab=91.56 E-value=0.96 Score=46.44 Aligned_cols=113 Identities=14% Similarity=0.189 Sum_probs=77.4
Q ss_pred chHHHHHHHHHHHhhhhhhhhccccccccCCcchHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHhhccccccceee
Q 016029 274 GWYAVVLIAMYNVGDLIGRYIPLLKFFKLESRKYITAATLSRFLLVPAFYFTAKYGDQGWMIMLTSFLGLSNGYLTVCVL 353 (396)
Q Consensus 274 ~w~~~~~~~~fn~gD~iGR~l~~~~~~~~~~~~~l~i~sl~R~~fiplfll~~~~~~d~~~~i~~~lfgltnGyl~t~~m 353 (396)
+|..-....+|.+|-.+|..+.+...=+ ..+|..++.+. ++.....+++...++-+.+.+.-++.|+..|-......
T Consensus 126 ~~~~~~~~s~~~~g~~~g~~~~g~l~Dr-~Grr~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~ 202 (505)
T TIGR00898 126 AWKVDLTQSCFFVGVLLGSFVFGYLSDR-FGRKKVLLLST--LVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGGIWVQAV 202 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhhhh-ccchHHHHHHH--HHHHHHHHHHHHcccHHHHHHHHHHHHhhccchHHHHH
Confidence 4555567788888888888776553212 23444433322 22222223333334555666678899999999888888
Q ss_pred eccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 016029 354 TAAPKGYKGPEQNALGNLLVLFLLGGIFAGATLDWL 389 (396)
Q Consensus 354 i~~p~~v~~~e~e~ag~~~~~~l~~Gl~~Gs~~s~~ 389 (396)
.+..+..++++|..++.+.......|..+|..++..
T Consensus 203 ~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~ 238 (505)
T TIGR00898 203 VLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYF 238 (505)
T ss_pred HHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888899999999999999888888898888877654
No 116
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=91.51 E-value=19 Score=37.33 Aligned_cols=131 Identities=11% Similarity=0.101 Sum_probs=74.6
Q ss_pred HHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHHHHHhhhhhhhccchhhc-cccCC
Q 016029 47 LITLAILAYHEAKIDTRRRIIFGYILFFASSLLVLVLDLATSGKGGLGTFIGICVISGAFGVADANVQGGMVGD-LSFMT 125 (396)
Q Consensus 47 l~~~~~~~~~~~~~~~~~Ri~~~~~~~~i~~~~~~~i~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~l-a~~~p 125 (396)
.+.++....+.+|+..|.=+..+.+...+..++.+... .+....++=++.|++.|..- +.+.. +..+|
T Consensus 76 al~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~----------Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP 144 (511)
T TIGR00806 76 LAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGT----------SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVP 144 (511)
T ss_pred HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCC
Confidence 34455566778888888777777777766666654211 14445555677788877777 44444 67788
Q ss_pred HHH----HHHHHhhhhhHhHHHHHHHHHHHhhccCCccccchhhhHHhHHHHHHHHHHHHHHHHHcCCChHHHHH
Q 016029 126 SEL----IQSFLAGLAASGAITSALRLITKAAFENSKDGLRKGALLFFAISSFFEFLCVILYAFVFPKIPIVKYY 196 (396)
Q Consensus 126 ~~~----~~a~~~G~g~aGi~~s~~~ii~~~~~~~~~~~~~~~a~~yF~ia~~~~~~~~~~~~~~l~k~~~~~~~ 196 (396)
++. ++-..+|+.+|++++.++--.. ...+ -.....+-|..+++.. ++++.-+ .|++-+..-|+
T Consensus 145 ~kER~ratsi~~sg~~vG~~Ia~~L~qll-~s~g----Wr~y~~Ln~Isl~s~~--~a~~~a~-~LP~~~~sl~f 211 (511)
T TIGR00806 145 PSRYQRAAAYSRAAVLLGVFLSSVLGQLL-VTLG----WISYSTLNIISLVFMT--FSVFLAL-FLKRPKRSLFF 211 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcC----chhHHHHHHHHHHHHH--HHHHHHH-hCCCCchhhhh
Confidence 764 3445577777777776665552 2221 1223444444554444 3333333 46654443333
No 117
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=91.40 E-value=1.9 Score=44.54 Aligned_cols=102 Identities=17% Similarity=0.176 Sum_probs=56.6
Q ss_pred HHHHHHHhhcc-CCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHHHHHhhhhh--hhccchhhccccCC
Q 016029 49 TLAILAYHEAK-IDTRRRIIFGYILFFASSLLVLVLDLATSGKGGLGTFIGICVISGAFGVADA--NVQGGMVGDLSFMT 125 (396)
Q Consensus 49 ~~~~~~~~~~~-~~~~~Ri~~~~~~~~i~~~~~~~i~~~~~~~~~~~~f~~~l~~~~~~g~~~~--~~q~s~~~la~~~p 125 (396)
.+++...+.+| -+.+.-++.|+++.++.-++-..++..+++ .=++.|+.=++.|++.| ..-=+..+-++.-+
T Consensus 87 ~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~-----~~y~mL~~R~l~Gvg~~n~a~lR~Y~a~~s~~~ 161 (488)
T KOG2325|consen 87 FSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNG-----VKYLMLVARILTGVGVGNFAVLRAYIADASTVE 161 (488)
T ss_pred cchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccc-----hHHHHHHHHHHcCcCcccHHHHHHHHHhccCcc
Confidence 33333334333 344666778888888777766556655421 24455666567776632 22233444445544
Q ss_pred HH--HHHHHHhhhhhHhHHHHHHHHHHHhhcc
Q 016029 126 SE--LIQSFLAGLAASGAITSALRLITKAAFE 155 (396)
Q Consensus 126 ~~--~~~a~~~G~g~aGi~~s~~~ii~~~~~~ 155 (396)
+| -..+...|+.++=+++..++.+.....+
T Consensus 162 dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~ 193 (488)
T KOG2325|consen 162 DRPRAFAATSGGFVLGIILGPTIQLAFTPLGE 193 (488)
T ss_pred chHHHHHHhhhHHHHHHHHhHHHHHHHhhhcC
Confidence 44 2344445566777778888877665443
No 118
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=91.38 E-value=15 Score=37.10 Aligned_cols=50 Identities=14% Similarity=0.057 Sum_probs=38.9
Q ss_pred HHHHhhccccccceeeeccCCCCCchhhhhh-hhHHHHHHHHHHHHHHHHH
Q 016029 338 TSFLGLSNGYLTVCVLTAAPKGYKGPEQNAL-GNLLVLFLLGGIFAGATLD 387 (396)
Q Consensus 338 ~~lfgltnGyl~t~~mi~~p~~v~~~e~e~a-g~~~~~~l~~Gl~~Gs~~s 387 (396)
+.+.|+|-|..-..++.|..+.+|+|.|..+ |-...+...+|..+|+.++
T Consensus 308 q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~ig 358 (400)
T PF03825_consen 308 QLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIG 358 (400)
T ss_pred HhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3468999999999999999998888877655 4456666778888888765
No 119
>PRK10429 melibiose:sodium symporter; Provisional
Probab=91.36 E-value=2.6 Score=43.17 Aligned_cols=76 Identities=16% Similarity=0.019 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHHHHHhhhhhhhccchhhcccc
Q 016029 44 PFALITLAILAYHEAKIDTRRRIIFGYILFFASSLLVLVLDLATSGKGGLGTFIGICVISGAFGVADANVQGGMVGDLSF 123 (396)
Q Consensus 44 ~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~i~~~~~~~i~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la~~ 123 (396)
+..++...+..++.+|+..+..+..+..+.++..+......... ....+..++..++.|.+.+..+....++.+.
T Consensus 277 i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad 351 (473)
T PRK10429 277 AANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAA-----PHNALLIVIAGILLNIGTALFWVLQVIMVAD 351 (473)
T ss_pred HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccC-----chhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444555566778888877666656554443333222111111 1113334444556667777666665555544
Q ss_pred C
Q 016029 124 M 124 (396)
Q Consensus 124 ~ 124 (396)
.
T Consensus 352 ~ 352 (473)
T PRK10429 352 T 352 (473)
T ss_pred h
Confidence 4
No 120
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=90.81 E-value=0.3 Score=46.82 Aligned_cols=109 Identities=13% Similarity=0.116 Sum_probs=71.4
Q ss_pred HHHHHHHHhhhhhhhhccccccccCCcchHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHhhccccccceeeeccCC
Q 016029 279 VLIAMYNVGDLIGRYIPLLKFFKLESRKYITAATLSRFLLVPAFYFTAKYGDQGWMIMLTSFLGLSNGYLTVCVLTAAPK 358 (396)
Q Consensus 279 ~~~~~fn~gD~iGR~l~~~~~~~~~~~~~l~i~sl~R~~fiplfll~~~~~~d~~~~i~~~lfgltnGyl~t~~mi~~p~ 358 (396)
.....+.++-.++....+...=+..++|.+.+..+++.+..-+..++ ++.+..++..++.|+.+|........+.++
T Consensus 36 ~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~ 112 (352)
T PF07690_consen 36 LLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFA---SNFWLLLIARFLLGIGSGFFSPASNALIAD 112 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhh---hhHHHHhhhccccccccccccccccccccc
Confidence 34555666666666554432112222344444444454441111122 555656667999999998888888888888
Q ss_pred CCCchhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 016029 359 GYKGPEQNALGNLLVLFLLGGIFAGATLDWLW 390 (396)
Q Consensus 359 ~v~~~e~e~ag~~~~~~l~~Gl~~Gs~~s~~~ 390 (396)
..+++||..+-.+......+|..+|..++-.+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l 144 (352)
T PF07690_consen 113 WFPPEERGRAFGILSAGFSLGSILGPLLGGFL 144 (352)
T ss_dssp CCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cchhhhhhhccccccchhhhhhhcccchhhhh
Confidence 88889999999999999999999998776543
No 121
>PRK11462 putative transporter; Provisional
Probab=90.64 E-value=1.8 Score=44.32 Aligned_cols=34 Identities=12% Similarity=-0.127 Sum_probs=20.1
Q ss_pred eehhhhHHHHHHHHHHHHhhccCCcchhhHHHHH
Q 016029 38 LTLVYQPFALITLAILAYHEAKIDTRRRIIFGYI 71 (396)
Q Consensus 38 ~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~ 71 (396)
+...+.+.+++...+..++.+|...+.....+..
T Consensus 268 ~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~ 301 (460)
T PRK11462 268 FLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNA 301 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHH
Confidence 3344666666666677778887765544333333
No 122
>PRK10504 putative transporter; Provisional
Probab=90.63 E-value=4.3 Score=41.20 Aligned_cols=73 Identities=16% Similarity=0.138 Sum_probs=34.4
Q ss_pred HHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHHHHHhhhhhhhccchhhc-cccCCHH
Q 016029 49 TLAILAYHEAKIDTRRRIIFGYILFFASSLLVLVLDLATSGKGGLGTFIGICVISGAFGVADANVQGGMVGD-LSFMTSE 127 (396)
Q Consensus 49 ~~~~~~~~~~~~~~~~Ri~~~~~~~~i~~~~~~~i~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~l-a~~~p~~ 127 (396)
...+..++.+|.+.+.-+..+..+..+...++...+.. . ..+......++.|++.+...+....+ .+..|++
T Consensus 313 ~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~-----~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 385 (471)
T PRK10504 313 MKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALL-----G--WYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDN 385 (471)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhcccc-----c--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence 33445667788766555555555555444333322211 1 12222223344555555555544444 2456666
Q ss_pred H
Q 016029 128 L 128 (396)
Q Consensus 128 ~ 128 (396)
.
T Consensus 386 ~ 386 (471)
T PRK10504 386 L 386 (471)
T ss_pred h
Confidence 3
No 123
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=90.61 E-value=0.57 Score=45.26 Aligned_cols=110 Identities=10% Similarity=-0.049 Sum_probs=67.6
Q ss_pred HHHHHHHHHhhhhhhhhccccccccCCcchHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHhhccccccceeeeccC
Q 016029 278 VVLIAMYNVGDLIGRYIPLLKFFKLESRKYITAATLSRFLLVPAFYFTAKYGDQGWMIMLTSFLGLSNGYLTVCVLTAAP 357 (396)
Q Consensus 278 ~~~~~~fn~gD~iGR~l~~~~~~~~~~~~~l~i~sl~R~~fiplfll~~~~~~d~~~~i~~~lfgltnGyl~t~~mi~~p 357 (396)
-.....+.++..++....+...=+..+++.+.+..++-.+... ++...++.+...+..++.|+..|........+.+
T Consensus 33 g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 109 (379)
T TIGR00881 33 GLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNL---FFGFSTSLWVMAALWALNGIFQGMGWPPCGRTVT 109 (379)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHH---HHHHhhhHHHHHHHHHHHHhhccccCCchHHHHH
Confidence 3456677788888777665421122223333333333322222 2222234555566788889988888777777778
Q ss_pred CCCCchhhhhhhhHHHHHHHHHHHHHH-HHHHHH
Q 016029 358 KGYKGPEQNALGNLLVLFLLGGIFAGA-TLDWLW 390 (396)
Q Consensus 358 ~~v~~~e~e~ag~~~~~~l~~Gl~~Gs-~~s~~~ 390 (396)
+..++++|..+..+.......|..+|. .++...
T Consensus 110 ~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~ 143 (379)
T TIGR00881 110 KWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGI 143 (379)
T ss_pred HhcCHhhheeeEeehhccchhHHHHHHHHHHHHH
Confidence 888888888888777777788888877 444433
No 124
>PRK11663 regulatory protein UhpC; Provisional
Probab=90.55 E-value=1.5 Score=44.26 Aligned_cols=115 Identities=9% Similarity=-0.009 Sum_probs=62.0
Q ss_pred HHHHHHHHhhhhhhhhccccccccCCcchHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHhhccccccceeeeccCC
Q 016029 279 VLIAMYNVGDLIGRYIPLLKFFKLESRKYITAATLSRFLLVPAFYFTAKYGDQGWMIMLTSFLGLSNGYLTVCVLTAAPK 358 (396)
Q Consensus 279 ~~~~~fn~gD~iGR~l~~~~~~~~~~~~~l~i~sl~R~~fiplfll~~~~~~d~~~~i~~~lfgltnGyl~t~~mi~~p~ 358 (396)
.....+.++-.+|+...+...=++ ++|++...+. ++.....+++...++.+...+..++.|+..|-.......+..+
T Consensus 62 ~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~ 138 (434)
T PRK11663 62 LLATLFYITYGVSKFVSGIVSDRS-NARYFMGIGL--IATGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTA 138 (434)
T ss_pred HHHHHHHHHHHHHHhhhhHHHhhc-CCchhHHHHH--HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHH
Confidence 345566677666666554421122 3444332222 2222222233332333444445566777777544444445556
Q ss_pred CCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 016029 359 GYKGPEQNALGNLLVLFLLGGIFAGATLDWLWLIGKGW 396 (396)
Q Consensus 359 ~v~~~e~e~ag~~~~~~l~~Gl~~Gs~~s~~~~~~~~~ 396 (396)
..+++||..+..+......+|..+|..++-.+.-..||
T Consensus 139 ~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw 176 (434)
T PRK11663 139 WYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGW 176 (434)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccH
Confidence 67778888888888777788888887665444333344
No 125
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=90.41 E-value=2.1 Score=42.24 Aligned_cols=106 Identities=10% Similarity=-0.013 Sum_probs=54.7
Q ss_pred HHHHHHHHhhhhhhhhccccccccCCcchHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHhhccccccceeeeccCC
Q 016029 279 VLIAMYNVGDLIGRYIPLLKFFKLESRKYITAATLSRFLLVPAFYFTAKYGDQGWMIMLTSFLGLSNGYLTVCVLTAAPK 358 (396)
Q Consensus 279 ~~~~~fn~gD~iGR~l~~~~~~~~~~~~~l~i~sl~R~~fiplfll~~~~~~d~~~~i~~~lfgltnGyl~t~~mi~~p~ 358 (396)
....++.+++.++....+...=+. ++|..+... -.......+++...++-+...+..++.|+..|+... .....++
T Consensus 58 ~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 133 (408)
T PRK09874 58 LVFSITFLFSAIASPFWGGLADRK-GRKIMLLRS--ALGMGIVMVLMGLAQNIWQFLILRALLGLLGGFVPN-ANALIAT 133 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhh-CcHHHHHHH--HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHh-HHHHHHH
Confidence 456677777777665543311122 333333222 222222222222223444555567788887776433 3334455
Q ss_pred CCCchhhhhhhhHHHHHHHHHHHHHHHHHH
Q 016029 359 GYKGPEQNALGNLLVLFLLGGIFAGATLDW 388 (396)
Q Consensus 359 ~v~~~e~e~ag~~~~~~l~~Gl~~Gs~~s~ 388 (396)
..++++|..+..+.......|..+|..++-
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 163 (408)
T PRK09874 134 QVPRNKSGWALGTLSTGGVSGALLGPLAGG 163 (408)
T ss_pred hcCHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777776666666666666666655543
No 126
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=89.81 E-value=1.5 Score=42.46 Aligned_cols=107 Identities=16% Similarity=0.086 Sum_probs=59.1
Q ss_pred HHHHHHHHHhhhhhhhhccccccccCCcchHHHHHHHHHHHHHHHHhhcccC-CchHHHHHHHHHhhccccccceeeecc
Q 016029 278 VVLIAMYNVGDLIGRYIPLLKFFKLESRKYITAATLSRFLLVPAFYFTAKYG-DQGWMIMLTSFLGLSNGYLTVCVLTAA 356 (396)
Q Consensus 278 ~~~~~~fn~gD~iGR~l~~~~~~~~~~~~~l~i~sl~R~~fiplfll~~~~~-~d~~~~i~~~lfgltnGyl~t~~mi~~ 356 (396)
-.....+.+++.++....+...=+. ++|....... .+.....+++...+ +-+...+..++.|+.+|... .++.+.
T Consensus 40 ~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~ 115 (366)
T TIGR00886 40 GNLVAVPVLAGAVLRIILGFLVDKF-GPRYTTTLSL--LLLAIPCLWAGLAVQSYSVLLLLRLFIGIAGGSFA-SCMPWI 115 (366)
T ss_pred hHhhHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHH--HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhchhhH-hHHHHH
Confidence 3446677777777776655421122 3343322221 22222222333323 44445556788888876543 344445
Q ss_pred CCCCCchhhhhhhhHHHHHHHHHHHHHHHHHH
Q 016029 357 PKGYKGPEQNALGNLLVLFLLGGIFAGATLDW 388 (396)
Q Consensus 357 p~~v~~~e~e~ag~~~~~~l~~Gl~~Gs~~s~ 388 (396)
.+..+++||..+..+.......|..+|..++-
T Consensus 116 ~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~ 147 (366)
T TIGR00886 116 SFFFPKKIQGTALGLAAGWGNMGGGVAQFVMP 147 (366)
T ss_pred HHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHH
Confidence 56667788888877777666677777666653
No 127
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=89.68 E-value=1.5 Score=42.93 Aligned_cols=110 Identities=14% Similarity=0.005 Sum_probs=67.1
Q ss_pred HHHHHHHHhhhhhhhhccccccccCCcchHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHhhccccccceeeeccCC
Q 016029 279 VLIAMYNVGDLIGRYIPLLKFFKLESRKYITAATLSRFLLVPAFYFTAKYGDQGWMIMLTSFLGLSNGYLTVCVLTAAPK 358 (396)
Q Consensus 279 ~~~~~fn~gD~iGR~l~~~~~~~~~~~~~l~i~sl~R~~fiplfll~~~~~~d~~~~i~~~lfgltnGyl~t~~mi~~p~ 358 (396)
.....+.+++.+|....+...=+ .++|..+... -.+..-..+++...++-+...+..++.|+..|-.......+..+
T Consensus 51 ~~~~~~~~~~~~~~~~~G~l~Dr-~g~r~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~ 127 (405)
T TIGR00891 51 SLISAALISRWFGALMFGLWGDR-YGRRLPMVTS--IVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIE 127 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHH--HHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence 34566777777776665542112 2344433332 22222222233333444455556788888887766666666677
Q ss_pred CCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 016029 359 GYKGPEQNALGNLLVLFLLGGIFAGATLDWLWL 391 (396)
Q Consensus 359 ~v~~~e~e~ag~~~~~~l~~Gl~~Gs~~s~~~~ 391 (396)
..++++|..+..+.......|..+|..++-...
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~ 160 (405)
T TIGR00891 128 SWPKHLRNKASGLLISGYAVGAVVAAQVYSLVV 160 (405)
T ss_pred hCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788889988888888888888888887765543
No 128
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=89.62 E-value=28 Score=36.05 Aligned_cols=57 Identities=9% Similarity=0.057 Sum_probs=39.0
Q ss_pred CchHHHHHHHHHhhccccccceeeeccCCCCCchhhhhhhhHHHHHHHHHHHHHHHH
Q 016029 330 DQGWMIMLTSFLGLSNGYLTVCVLTAAPKGYKGPEQNALGNLLVLFLLGGIFAGATL 386 (396)
Q Consensus 330 ~d~~~~i~~~lfgltnGyl~t~~mi~~p~~v~~~e~e~ag~~~~~~l~~Gl~~Gs~~ 386 (396)
|.+|.+...++.|+..+.+.-..+....+..|++.|...-.+..+...+|-..|+.+
T Consensus 381 s~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~ 437 (500)
T PRK09584 381 SVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYV 437 (500)
T ss_pred CHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777789999999999888887777677677666666555544444444444433
No 129
>PRK10489 enterobactin exporter EntS; Provisional
Probab=89.32 E-value=0.58 Score=46.80 Aligned_cols=116 Identities=15% Similarity=0.036 Sum_probs=64.2
Q ss_pred hHHHHHHHHHHHhhhhhhhhccccccccCCcchHHHHHHHHHHHHHHHHhhcc-cCCc-hHHHHHHHHHhhcccccccee
Q 016029 275 WYAVVLIAMYNVGDLIGRYIPLLKFFKLESRKYITAATLSRFLLVPAFYFTAK-YGDQ-GWMIMLTSFLGLSNGYLTVCV 352 (396)
Q Consensus 275 w~~~~~~~~fn~gD~iGR~l~~~~~~~~~~~~~l~i~sl~R~~fiplfll~~~-~~~d-~~~~i~~~lfgltnGyl~t~~ 352 (396)
...-.....+.++-.+|....+...=+..++|.+.+..++..+...+...+.. ..++ ++..+..++.|+..|......
T Consensus 52 ~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~ 131 (417)
T PRK10489 52 LQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLGVTAL 131 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555666666666655433211222233333333333322222111111 1233 344445677788777766666
Q ss_pred eeccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 016029 353 LTAAPKGYKGPEQNALGNLLVLFLLGGIFAGATLDWLW 390 (396)
Q Consensus 353 mi~~p~~v~~~e~e~ag~~~~~~l~~Gl~~Gs~~s~~~ 390 (396)
....|+.+++++|..+..+......+|..+|..++-.+
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l 169 (417)
T PRK10489 132 LAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLL 169 (417)
T ss_pred hhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHH
Confidence 66778888888888888888777888888887776443
No 130
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=89.23 E-value=1.2 Score=50.85 Aligned_cols=112 Identities=17% Similarity=0.090 Sum_probs=76.1
Q ss_pred HHHHHHHHhhhhhhhhccccccccCCcch-HHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHhhccccccceeeeccC
Q 016029 279 VLIAMYNVGDLIGRYIPLLKFFKLESRKY-ITAATLSRFLLVPAFYFTAKYGDQGWMIMLTSFLGLSNGYLTVCVLTAAP 357 (396)
Q Consensus 279 ~~~~~fn~gD~iGR~l~~~~~~~~~~~~~-l~i~sl~R~~fiplfll~~~~~~d~~~~i~~~lfgltnGyl~t~~mi~~p 357 (396)
+...+|.++-.++....+...=+. ++|. +.+..+++.++..+..++...++-+..++..++.|+..|........+.+
T Consensus 51 ~~~~~~~l~~~l~~~~~G~l~Dr~-grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~ 129 (1146)
T PRK08633 51 IVNALFLLPFLLLSSPAGFLADKF-SKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIP 129 (1146)
T ss_pred HHHHHHHHHHHHHhhhHhhhcccc-cHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhH
Confidence 444566666666655544321122 3344 33444556666666666654455555666788899999988888888888
Q ss_pred CCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 016029 358 KGYKGPEQNALGNLLVLFLLGGIFAGATLDWLWL 391 (396)
Q Consensus 358 ~~v~~~e~e~ag~~~~~~l~~Gl~~Gs~~s~~~~ 391 (396)
+..++++|..+..+......+|..+|..++-.+.
T Consensus 130 ~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~ 163 (1146)
T PRK08633 130 ELVGKENLSRANGLLEAFTIVAILAGTALFSFLF 163 (1146)
T ss_pred HhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999999999999998888776544
No 131
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=88.70 E-value=32 Score=35.51 Aligned_cols=75 Identities=11% Similarity=0.118 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHHHHHhhhhhhhccchhhcccc-C
Q 016029 46 ALITLAILAYHEAKIDTRRRIIFGYILFFASSLLVLVLDLATSGKGGLGTFIGICVISGAFGVADANVQGGMVGDLSF-M 124 (396)
Q Consensus 46 ~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~i~~~~~~~i~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la~~-~ 124 (396)
.+++.++...+.+++..+.=...++.+.++.-+... .++ .++..++.=++.|++.+-.....+++.+. +
T Consensus 131 ~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a---~a~-------~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~ 200 (521)
T KOG0255|consen 131 VLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTA---FAP-------NYWMFLIFRFLSGFFGSGPLTVGFGLVAEIV 200 (521)
T ss_pred HHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHH---HhC-------cHHHHHHHHHHHHhhccchhHHhHhhheeec
Confidence 334445555567775555555666666666554332 322 16666777778888887777777777655 5
Q ss_pred CHHHHH
Q 016029 125 TSELIQ 130 (396)
Q Consensus 125 p~~~~~ 130 (396)
++++-+
T Consensus 201 ~~~~R~ 206 (521)
T KOG0255|consen 201 SPKQRG 206 (521)
T ss_pred Ccchhh
Confidence 666543
No 132
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=88.50 E-value=7.9 Score=36.62 Aligned_cols=107 Identities=15% Similarity=0.216 Sum_probs=54.7
Q ss_pred chHHHHHHHHHHHhhhhhhhhccc-cccccCCcchHHHHH-HHHHHHHHHHHhhccc--CCchHHHHHHHHHhhcccccc
Q 016029 274 GWYAVVLIAMYNVGDLIGRYIPLL-KFFKLESRKYITAAT-LSRFLLVPAFYFTAKY--GDQGWMIMLTSFLGLSNGYLT 349 (396)
Q Consensus 274 ~w~~~~~~~~fn~gD~iGR~l~~~-~~~~~~~~~~l~i~s-l~R~~fiplfll~~~~--~~d~~~~i~~~lfgltnGyl~ 349 (396)
+|...+..-+|..|=++|-+.-+. .+... +||+..... .+-.++..+-.+|.+. ++...-..++.++|+-.|.+.
T Consensus 140 ~~~~~~~~I~fv~g~~~G~~~ig~~nkt~~-kRk~fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G~f~ 218 (267)
T PF07672_consen 140 NWIIPIFQILFVAGYFLGPFTIGLWNKTNY-KRKPFIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAGFFL 218 (267)
T ss_pred chhhHHHHHHHHHHHhhhceeeccchhhhh-hhhhHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHH
Confidence 455566677888888888654332 22222 344433222 2234444455555422 333333334667777666655
Q ss_pred c---eeeeccCCCCCchhhhhhhhHHHHHHHHHHH
Q 016029 350 V---CVLTAAPKGYKGPEQNALGNLLVLFLLGGIF 381 (396)
Q Consensus 350 t---~~mi~~p~~v~~~e~e~ag~~~~~~l~~Gl~ 381 (396)
= ..+-+=|..-++.+.+..|.+-++.=.+|=.
T Consensus 219 WgiQ~ViL~lPhEyK~~~pk~ig~~Fg~iWGfGY~ 253 (267)
T PF07672_consen 219 WGIQGVILNLPHEYKGYNPKKIGIQFGLIWGFGYI 253 (267)
T ss_pred HhhhHHHhcChhhhcCCCcceehhHHHHHHHHHHH
Confidence 1 1122335555555566777766665555543
No 133
>PRK10054 putative transporter; Provisional
Probab=88.34 E-value=1.7 Score=43.39 Aligned_cols=148 Identities=9% Similarity=-0.028 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHhhhhccccCceEeeccCCCCCCchHHHHHHHHHHHhhhhhhhhccccccccCCcchHHHHHHHHHHHHH
Q 016029 241 NIDYAIDMFVIYTLTLSIFPGFLSEDTGSHSLGGWYAVVLIAMYNVGDLIGRYIPLLKFFKLESRKYITAATLSRFLLVP 320 (396)
Q Consensus 241 i~~~~~~~~l~f~vTl~vFP~i~~~~~~~~~~~~w~~~~~~~~fn~gD~iGR~l~~~~~~~~~~~~~l~i~sl~R~~fip 320 (396)
.+...+..++..+....+.|-+....++....++-..-.....+.++..+++...+...=+..+++.+.+..++..+-..
T Consensus 9 ~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~ 88 (395)
T PRK10054 9 TSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFI 88 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHH
Confidence 44555555555555554555443221111111122223334455666666555443321122223333344444433333
Q ss_pred HHHhhcccCCchHHHHHHHHHhhccccccceeeeccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 016029 321 AFYFTAKYGDQGWMIMLTSFLGLSNGYLTVCVLTAAPKGYKGPEQNALGNLLVLFLLGGIFAGATLDWLWL 391 (396)
Q Consensus 321 lfll~~~~~~d~~~~i~~~lfgltnGyl~t~~mi~~p~~v~~~e~e~ag~~~~~~l~~Gl~~Gs~~s~~~~ 391 (396)
++.+ .++.+..++...+.|...+-.........++..++++|..+-.+.....++|..+|..++-.+.
T Consensus 89 ~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~ 156 (395)
T PRK10054 89 AIPL---VNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLV 156 (395)
T ss_pred HHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 1222222323344444433333333344466777788888877888888889888888776544
No 134
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=87.72 E-value=1.6 Score=45.08 Aligned_cols=113 Identities=21% Similarity=0.202 Sum_probs=78.1
Q ss_pred HHHHHHhhhhhhhhccccccccCCcchHHHHHHH-HHHHHHHHHhhcccCCchHHHHHHHHHhhccccccceeeeccCCC
Q 016029 281 IAMYNVGDLIGRYIPLLKFFKLESRKYITAATLS-RFLLVPAFYFTAKYGDQGWMIMLTSFLGLSNGYLTVCVLTAAPKG 359 (396)
Q Consensus 281 ~~~fn~gD~iGR~l~~~~~~~~~~~~~l~i~sl~-R~~fiplfll~~~~~~d~~~~i~~~lfgltnGyl~t~~mi~~p~~ 359 (396)
..+|-+|-.+|-+.....- ....||..+.++.+ -.+--.+..+|...++....++-=++.|+..|-..+...++-.+.
T Consensus 66 vs~f~iG~~~Gs~~~~~la-~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~ 144 (485)
T KOG0569|consen 66 VSIFFIGGMIGSFSSGLLA-DRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEI 144 (485)
T ss_pred HHHHHHHHHHHHHHHHHHH-HhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhc
Confidence 4566667777766654321 11244433333222 222233444444555555555568899999999998888887788
Q ss_pred CCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhcC
Q 016029 360 YKGPEQNALGNLLVLFLLGGIFAGATLDWLWLIGK 394 (396)
Q Consensus 360 v~~~e~e~ag~~~~~~l~~Gl~~Gs~~s~~~~~~~ 394 (396)
-|++.|...|.+..++.+.|..+|..++.--++|.
T Consensus 145 sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt 179 (485)
T KOG0569|consen 145 SPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGT 179 (485)
T ss_pred ChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCC
Confidence 88889999999999999999999999998888775
No 135
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=87.68 E-value=10 Score=37.75 Aligned_cols=73 Identities=15% Similarity=0.069 Sum_probs=40.6
Q ss_pred hhHHHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHHHHHhhhhhhhccchhhcc
Q 016029 42 YQPFALITLAILAYHEAKIDTRRRIIFGYILFFASSLLVLVLDLATSGKGGLGTFIGICVISGAFGVADANVQGGMVGDL 121 (396)
Q Consensus 42 ~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~i~~~~~~~i~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la 121 (396)
+.+..++...+..++.+|+..+..+..+..+..+..+.....+ ...+...+..++.|++.+..+....++.
T Consensus 266 ~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 336 (437)
T TIGR00792 266 AIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAG---------SNLPLILVLIILAGFGQNFVTGLVWALV 336 (437)
T ss_pred HHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcc---------hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556666667788888766656666555544443332111 0123333445566777777666666665
Q ss_pred cc
Q 016029 122 SF 123 (396)
Q Consensus 122 ~~ 123 (396)
+.
T Consensus 337 ~~ 338 (437)
T TIGR00792 337 AD 338 (437)
T ss_pred hh
Confidence 43
No 136
>PRK03699 putative transporter; Provisional
Probab=87.50 E-value=3.2 Score=41.15 Aligned_cols=102 Identities=13% Similarity=-0.002 Sum_probs=53.8
Q ss_pred HHHHHHHhhhhhhhhccccccccCCcchHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHhhccccccceeeeccCCC
Q 016029 280 LIAMYNVGDLIGRYIPLLKFFKLESRKYITAATLSRFLLVPAFYFTAKYGDQGWMIMLTSFLGLSNGYLTVCVLTAAPKG 359 (396)
Q Consensus 280 ~~~~fn~gD~iGR~l~~~~~~~~~~~~~l~i~sl~R~~fiplfll~~~~~~d~~~~i~~~lfgltnGyl~t~~mi~~p~~ 359 (396)
....+.++-.+|........-+. ++|...+. ...+.....+++...++.+...+..++.|+..|...+......++.
T Consensus 47 ~~s~~~~~~~i~~~~~g~l~dr~-g~r~~~~~--~~~~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~ 123 (394)
T PRK03699 47 TFTFLNAGILISIFLNAWLMEII-PLKRQLIF--GFALMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHV 123 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHH--HHHHHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhh
Confidence 35566667777666554321122 34443322 2333333333333334455555667888998887666655555666
Q ss_pred CCchhhhhhhhHHHHHHHHHHHHHH
Q 016029 360 YKGPEQNALGNLLVLFLLGGIFAGA 384 (396)
Q Consensus 360 v~~~e~e~ag~~~~~~l~~Gl~~Gs 384 (396)
.++++|..+..........|-.++.
T Consensus 124 ~~~~~r~~~~~~~~~~~~~g~~~~~ 148 (394)
T PRK03699 124 YEGKQRGSRLLFTDSFFSMAGMIFP 148 (394)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHH
Confidence 6666776665554444444433433
No 137
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=86.80 E-value=41 Score=34.67 Aligned_cols=73 Identities=16% Similarity=0.166 Sum_probs=40.3
Q ss_pred HHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHHHHHhhhhhhhccchhhc-cccCCHHH
Q 016029 50 LAILAYHEAKIDTRRRIIFGYILFFASSLLVLVLDLATSGKGGLGTFIGICVISGAFGVADANVQGGMVGD-LSFMTSEL 128 (396)
Q Consensus 50 ~~~~~~~~~~~~~~~Ri~~~~~~~~i~~~~~~~i~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~l-a~~~p~~~ 128 (396)
.+....+.+|+..+.-+..+..+..+.++......... ...|+..+++-++.|++.+.. .+.... ...+|++.
T Consensus 87 rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~-----~~s~~~lli~r~l~Gigg~~f-~~~~~~vs~wfp~~~ 160 (462)
T PRK15034 87 RVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNP-----NTPFGIFIVIALLCGFAGANF-ASSMGNISFFFPKAK 160 (462)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHccc-----CCCHHHHHHHHHHHHHHHHhH-HHHHHHHHHHCCHhH
Confidence 34445677887776655566666555554443211000 122666777777788774444 445555 44588763
No 138
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=86.63 E-value=3.1 Score=42.29 Aligned_cols=112 Identities=13% Similarity=-0.010 Sum_probs=69.3
Q ss_pred HHHHHHHHhhhhhhhhccccccccCCcchHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHhhccccccceeeeccCC
Q 016029 279 VLIAMYNVGDLIGRYIPLLKFFKLESRKYITAATLSRFLLVPAFYFTAKYGDQGWMIMLTSFLGLSNGYLTVCVLTAAPK 358 (396)
Q Consensus 279 ~~~~~fn~gD~iGR~l~~~~~~~~~~~~~l~i~sl~R~~fiplfll~~~~~~d~~~~i~~~lfgltnGyl~t~~mi~~p~ 358 (396)
.+...|.++-.+|....+...=+. ++|.......+=....++........+-+..++.-++.|+..|-.......+.++
T Consensus 80 ~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~ 158 (465)
T TIGR00894 80 LILSSHFYGQIIIQIPVGYLAGKY-VFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVK 158 (465)
T ss_pred HHHHHHHHHHHHHHcchHHHHHHh-CcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHh
Confidence 345566666666665554321122 3343333322222222222111222233455556888999999888888888899
Q ss_pred CCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 016029 359 GYKGPEQNALGNLLVLFLLGGIFAGATLDWLWL 391 (396)
Q Consensus 359 ~v~~~e~e~ag~~~~~~l~~Gl~~Gs~~s~~~~ 391 (396)
..+++||..+..+......+|..+|..++-.+.
T Consensus 159 ~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~ 191 (465)
T TIGR00894 159 WAPPKERSRLLGMSTSGFQLGTFIFLPISGWLC 191 (465)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998888889888888765444
No 139
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=86.13 E-value=38 Score=34.30 Aligned_cols=87 Identities=18% Similarity=0.205 Sum_probs=39.7
Q ss_pred HHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHHHHHhhhhhhhccchhhc-cccCC
Q 016029 47 LITLAILAYHEAKIDTRRRIIFGYILFFASSLLVLVLDLATSGKGGLGTFIGICVISGAFGVADANVQGGMVGD-LSFMT 125 (396)
Q Consensus 47 l~~~~~~~~~~~~~~~~~Ri~~~~~~~~i~~~~~~~i~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~l-a~~~p 125 (396)
+..++....+.+.+.+|.-++.+....++.-.++. ..+ + .+.+-++-+.-|.+++- +-..++. =+..|
T Consensus 55 l~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll---~~~----s---v~~mq~~q~~yg~~~a~-evay~sYiys~v~ 123 (412)
T PF01770_consen 55 LAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLL---FGT----S---VLAMQLMQFFYGLATAA-EVAYYSYIYSVVD 123 (412)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH---HHC----c---HHHHHHHHHHHHHHHHH-HHHHHHHheeecC
Confidence 33344444556667777666655444333333221 111 0 11122222333444333 4444454 25556
Q ss_pred HHHH--------HHHHhhhhhHhHHHH
Q 016029 126 SELI--------QSFLAGLAASGAITS 144 (396)
Q Consensus 126 ~~~~--------~a~~~G~g~aGi~~s 144 (396)
+++- .+.+.|--+|++++-
T Consensus 124 ~~~yq~vts~~raa~l~g~~~s~~lgQ 150 (412)
T PF01770_consen 124 KEHYQKVTSYTRAATLVGRFISSLLGQ 150 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5542 345566666666653
No 140
>PRK03545 putative arabinose transporter; Provisional
Probab=85.96 E-value=3.1 Score=41.07 Aligned_cols=74 Identities=11% Similarity=0.002 Sum_probs=52.2
Q ss_pred HhhcccCCchHHHHHHHHHhhccccccceeeeccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 016029 323 YFTAKYGDQGWMIMLTSFLGLSNGYLTVCVLTAAPKGYKGPEQNALGNLLVLFLLGGIFAGATLDWLWLIGKGW 396 (396)
Q Consensus 323 ll~~~~~~d~~~~i~~~lfgltnGyl~t~~mi~~p~~v~~~e~e~ag~~~~~~l~~Gl~~Gs~~s~~~~~~~~~ 396 (396)
++|...++-+...+..++.|+.+|...+....+.++..++|||..+-.+.......|..+|..++-.+.-..||
T Consensus 89 ~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw 162 (390)
T PRK03545 89 VLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGW 162 (390)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcH
Confidence 33444445555555678889888877666666667777888998888888888888888888777654433344
No 141
>PRK10091 MFS transport protein AraJ; Provisional
Probab=85.89 E-value=2.9 Score=41.28 Aligned_cols=144 Identities=16% Similarity=-0.024 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHhhhhccccCceEeeccCCCCCCchHHHHHHHHHHHhhhhhhhhccccccccCCcchHHHHHHHHHHHH
Q 016029 240 QNIDYAIDMFVIYTLTLSIFPGFLSEDTGSHSLGGWYAVVLIAMYNVGDLIGRYIPLLKFFKLESRKYITAATLSRFLLV 319 (396)
Q Consensus 240 ~i~~~~~~~~l~f~vTl~vFP~i~~~~~~~~~~~~w~~~~~~~~fn~gD~iGR~l~~~~~~~~~~~~~l~i~sl~R~~fi 319 (396)
.++...+..++.-......-|.+....++.+. ++-..-.....++++-.+|+....... .+.++|..... .-.+..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-s~~~~g~~~s~~~~~~~~~~~~~g~l~-dr~g~r~~~~~--~~~~~~ 79 (382)
T PRK10091 4 VILSLALGTFGLGMAEFGIMGVLTELAHDVGI-SIPAAGHMISYYALGVVVGAPIIALFS-SRYSLKHILLF--LVALCV 79 (382)
T ss_pred hHHHHHHHHHHHHhhHHHHHhChHHHHHHcCC-CHHHHhHHHHHHHHHHHHHHHHHHHHH-ccCccHHHHHH--HHHHHH
Confidence 45555555555444444444433211111111 111122346677788888877665421 12244443322 222233
Q ss_pred HHHHhhcccCCchHHHHHHHHHhhccccccceeeeccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHH
Q 016029 320 PAFYFTAKYGDQGWMIMLTSFLGLSNGYLTVCVLTAAPKGYKGPEQNALGNLLVLFLLGGIFAGATLD 387 (396)
Q Consensus 320 plfll~~~~~~d~~~~i~~~lfgltnGyl~t~~mi~~p~~v~~~e~e~ag~~~~~~l~~Gl~~Gs~~s 387 (396)
...+++..-++.+...+..++.|+..|-..........+..++++|..+-.+......+|..+|..++
T Consensus 80 ~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~ 147 (382)
T PRK10091 80 IGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLG 147 (382)
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHH
Confidence 33344444455566666788899887765544444445556666676665555555556655555544
No 142
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=85.88 E-value=1.7 Score=47.48 Aligned_cols=110 Identities=16% Similarity=0.147 Sum_probs=68.3
Q ss_pred HHHHHHHHhhhhhhhhccccccccCCcchHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHhhccccccceeeeccCC
Q 016029 279 VLIAMYNVGDLIGRYIPLLKFFKLESRKYITAATLSRFLLVPAFYFTAKYGDQGWMIMLTSFLGLSNGYLTVCVLTAAPK 358 (396)
Q Consensus 279 ~~~~~fn~gD~iGR~l~~~~~~~~~~~~~l~i~sl~R~~fiplfll~~~~~~d~~~~i~~~lfgltnGyl~t~~mi~~p~ 358 (396)
.+...+.+|-.+|..+.++..=+. .+|...+.++ ++.....+++..-++.+.+++.-++.|+..|-.......+..+
T Consensus 206 ~l~s~~~lG~iiG~li~G~LsDR~-GRR~~lii~l--il~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE 282 (742)
T TIGR01299 206 MLGLIVYLGMMVGAFFWGGLADKL-GRKQCLLICL--SVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAE 282 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHH--HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777776655421122 3444333322 2222222223322445556667888888877777777777777
Q ss_pred CCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 016029 359 GYKGPEQNALGNLLVLFLLGGIFAGATLDWLWL 391 (396)
Q Consensus 359 ~v~~~e~e~ag~~~~~~l~~Gl~~Gs~~s~~~~ 391 (396)
..++++|..+-.++..+..+|..+|..++..++
T Consensus 283 ~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il 315 (742)
T TIGR01299 283 FLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAII 315 (742)
T ss_pred HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888888888888888888888888776655
No 143
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=85.87 E-value=6.6 Score=39.83 Aligned_cols=102 Identities=10% Similarity=-0.044 Sum_probs=47.7
Q ss_pred HHHHHHHHhhhhhhhhccccccccCCcchHHHHHHHHHHHHHHHHhhcccCCch-HHHHHHHHHhhccccccceeeeccC
Q 016029 279 VLIAMYNVGDLIGRYIPLLKFFKLESRKYITAATLSRFLLVPAFYFTAKYGDQG-WMIMLTSFLGLSNGYLTVCVLTAAP 357 (396)
Q Consensus 279 ~~~~~fn~gD~iGR~l~~~~~~~~~~~~~l~i~sl~R~~fiplfll~~~~~~d~-~~~i~~~lfgltnGyl~t~~mi~~p 357 (396)
.....+.++..+|....+...=+..+++.+.+..++-.+..-++.+.....++. ..++..++.|+..|...........
T Consensus 67 ~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~ 146 (452)
T PRK11273 67 FALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMV 146 (452)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 335566666666665544421122223333333232222222222222222333 3444567778777654332333334
Q ss_pred CCCCchhhhhhhhHHHHHHHHHH
Q 016029 358 KGYKGPEQNALGNLLVLFLLGGI 380 (396)
Q Consensus 358 ~~v~~~e~e~ag~~~~~~l~~Gl 380 (396)
+..++++|..+-.+.......|.
T Consensus 147 ~~~~~~~r~~~~~~~~~~~~~g~ 169 (452)
T PRK11273 147 HWWSQKERGGIVSVWNCAHNVGG 169 (452)
T ss_pred HhCChHHHHHHHHHHHHHHHhhh
Confidence 44567778777766655555553
No 144
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=85.74 E-value=2.7 Score=41.60 Aligned_cols=109 Identities=14% Similarity=-0.047 Sum_probs=68.8
Q ss_pred HHHHHHHHHhhhhhhhhccccccccCCcchHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHhhccccccceeeeccC
Q 016029 278 VVLIAMYNVGDLIGRYIPLLKFFKLESRKYITAATLSRFLLVPAFYFTAKYGDQGWMIMLTSFLGLSNGYLTVCVLTAAP 357 (396)
Q Consensus 278 ~~~~~~fn~gD~iGR~l~~~~~~~~~~~~~l~i~sl~R~~fiplfll~~~~~~d~~~~i~~~lfgltnGyl~t~~mi~~p 357 (396)
-.....+.++..+|....+...=+ .++|+..... -++.....+++...++.+...+..++.|+..|..........+
T Consensus 53 g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~ 129 (406)
T PRK11551 53 GWAFSAGILGLLPGALLGGRLADR-IGRKRILIVS--VALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTS 129 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hCCchhHHHH--HHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 345667777877777665542112 2344433332 2233333334444455556666788889988877666666677
Q ss_pred CCCCchhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 016029 358 KGYKGPEQNALGNLLVLFLLGGIFAGATLDWL 389 (396)
Q Consensus 358 ~~v~~~e~e~ag~~~~~~l~~Gl~~Gs~~s~~ 389 (396)
+..++++|..+..+.......|..+|..++..
T Consensus 130 ~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~ 161 (406)
T PRK11551 130 EAVGPRLRGTAVSLMYCGVPFGGALASVIGVL 161 (406)
T ss_pred HHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888889888888887777887777776643
No 145
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=85.70 E-value=0.001 Score=67.38 Aligned_cols=99 Identities=13% Similarity=0.087 Sum_probs=55.7
Q ss_pred hhHHHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHHHHHhhhhhhhccchhhcc
Q 016029 42 YQPFALITLAILAYHEAKIDTRRRIIFGYILFFASSLLVLVLDLATSGKGGLGTFIGICVISGAFGVADANVQGGMVGDL 121 (396)
Q Consensus 42 ~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~i~~~~~~~i~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la 121 (396)
..+...++.++...+.+|...|.=+..+..+..+..++.. ..+ . ...++..++.-++.|++.|..+.....+.
T Consensus 55 ~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~---~~~-~---~~~~~~~~~~R~~~G~~~g~~~~~~~~~~ 127 (451)
T PF00083_consen 55 FFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIA---FAP-S---YNNFWMLLIGRFLIGFGIGGAYVVSPIYI 127 (451)
T ss_pred HHhhhccccccccccccccccccccccccccccccccccc---ccc-c---ccccccccccccccccccccccccccccc
Confidence 3333444555666677887777555566666655554432 111 0 01255555666788999998888888887
Q ss_pred ccCC-HHHH----HHHHhhhhhHhHHHHHHH
Q 016029 122 SFMT-SELI----QSFLAGLAASGAITSALR 147 (396)
Q Consensus 122 ~~~p-~~~~----~a~~~G~g~aGi~~s~~~ 147 (396)
.... +++- .....+..++-+++.+..
T Consensus 128 ~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~ 158 (451)
T PF00083_consen 128 SEIAPPKHRGFLSSLFQLFWALGILLASLIG 158 (451)
T ss_pred ccccccccccccccccccccccccccccccc
Confidence 7764 3332 333344444444444443
No 146
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=85.58 E-value=3.3 Score=40.88 Aligned_cols=110 Identities=10% Similarity=0.004 Sum_probs=62.3
Q ss_pred HHHHHHHHHhhhhhhhhccccccccCCcchHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHhhccccccceeeeccC
Q 016029 278 VVLIAMYNVGDLIGRYIPLLKFFKLESRKYITAATLSRFLLVPAFYFTAKYGDQGWMIMLTSFLGLSNGYLTVCVLTAAP 357 (396)
Q Consensus 278 ~~~~~~fn~gD~iGR~l~~~~~~~~~~~~~l~i~sl~R~~fiplfll~~~~~~d~~~~i~~~lfgltnGyl~t~~mi~~p 357 (396)
-.....+.++..++....+...=+..++|.+.+.. ..+....+++...++.+...+..++.|+.+|..........+
T Consensus 41 ~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~---~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~ 117 (392)
T PRK10473 41 HIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGA---ALFIIASLLCSLAETSSLFLAGRFLQGIGAGCCYVVAFAILR 117 (392)
T ss_pred HHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHH---HHHHHHHHHHHHhCcHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 34456666777666655443211222233333222 222222222322234445555677889888877766666777
Q ss_pred CCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 016029 358 KGYKGPEQNALGNLLVLFLLGGIFAGATLDWLW 390 (396)
Q Consensus 358 ~~v~~~e~e~ag~~~~~~l~~Gl~~Gs~~s~~~ 390 (396)
+..+++||..+..+.......|-.+|..++..+
T Consensus 118 ~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l 150 (392)
T PRK10473 118 DTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLI 150 (392)
T ss_pred HHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888888877666666666666676665444
No 147
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=85.07 E-value=3.7 Score=40.02 Aligned_cols=109 Identities=15% Similarity=0.080 Sum_probs=63.6
Q ss_pred HHHHHHHHHhhhhhhhhccccccccCCcchHH-HHHHHHHHHHHHHHhhcccCCchHHHHHHHHHhhccccccceeeecc
Q 016029 278 VVLIAMYNVGDLIGRYIPLLKFFKLESRKYIT-AATLSRFLLVPAFYFTAKYGDQGWMIMLTSFLGLSNGYLTVCVLTAA 356 (396)
Q Consensus 278 ~~~~~~fn~gD~iGR~l~~~~~~~~~~~~~l~-i~sl~R~~fiplfll~~~~~~d~~~~i~~~lfgltnGyl~t~~mi~~ 356 (396)
-.....+.++-.+|+...+...=+. ++|... ...+.-.+. .+++...++.+...+..++.|+..|..........
T Consensus 29 ~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~i~---~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 104 (377)
T PRK11102 29 QMTLSAYILGFAIGQLFYGPMADSF-GRKPVILGGTLVFALA---AVACALAQTIDQLIYMRFLHGLAAAAASVVINALM 104 (377)
T ss_pred HHHHHHHHHHHHHHHHhhchHHhhc-CChHHHHHHHHHHHHH---HHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446677777777777665421122 334332 222222222 22222223344445567788888877665555566
Q ss_pred CCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 016029 357 PKGYKGPEQNALGNLLVLFLLGGIFAGATLDWLW 390 (396)
Q Consensus 357 p~~v~~~e~e~ag~~~~~~l~~Gl~~Gs~~s~~~ 390 (396)
++..++++|..+..+......+|..+|..++-..
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l 138 (377)
T PRK11102 105 RDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWL 138 (377)
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667778888888887777778888877765443
No 148
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=85.06 E-value=2.6 Score=48.21 Aligned_cols=87 Identities=9% Similarity=0.081 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHHhhcccCCchHHHHHHHHHhhccccccceeeeccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 016029 310 AATLSRFLLVPAFYFTAKYGDQGWMIMLTSFLGLSNGYLTVCVLTAAPKGYKGPEQNALGNLLVLFLLGGIFAGATLDWL 389 (396)
Q Consensus 310 i~sl~R~~fiplfll~~~~~~d~~~~i~~~lfgltnGyl~t~~mi~~p~~v~~~e~e~ag~~~~~~l~~Gl~~Gs~~s~~ 389 (396)
.+..++.+...+.+++...++-+..++..++.|+.++......+..-|+.++++++..+..++.....+|..+|..++-.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~ 166 (1140)
T PRK06814 87 ILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGL 166 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555545444445666667789999999999988888888999999999999999999999999999988877
Q ss_pred HHhcCCC
Q 016029 390 WLIGKGW 396 (396)
Q Consensus 390 ~~~~~~~ 396 (396)
++-..||
T Consensus 167 l~~~~~~ 173 (1140)
T PRK06814 167 ATISGNF 173 (1140)
T ss_pred HHhcccc
Confidence 6655554
No 149
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=84.98 E-value=2.2 Score=43.24 Aligned_cols=106 Identities=14% Similarity=0.088 Sum_probs=68.7
Q ss_pred HHHHHHhhhhhhhhccccccccCCcchHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHhhccccccceeeeccCCCC
Q 016029 281 IAMYNVGDLIGRYIPLLKFFKLESRKYITAATLSRFLLVPAFYFTAKYGDQGWMIMLTSFLGLSNGYLTVCVLTAAPKGY 360 (396)
Q Consensus 281 ~~~fn~gD~iGR~l~~~~~~~~~~~~~l~i~sl~R~~fiplfll~~~~~~d~~~~i~~~lfgltnGyl~t~~mi~~p~~v 360 (396)
...|.++..+|....+...=+ .++|...+... .++....++|...++-+..++..++.|+..|........+.++..
T Consensus 43 ~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~ 119 (485)
T TIGR00711 43 ITSYMLANAISIPLTGWLAKR-FGTRRLFLIST--FAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIY 119 (485)
T ss_pred HHHHHHHHHHHHHhHHHHHHH-hCcHHHHHHHH--HHHHHHHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHC
Confidence 456666666666554432111 23444333222 233333344444455555666788999999988888888888888
Q ss_pred CchhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 016029 361 KGPEQNALGNLLVLFLLGGIFAGATLDWL 389 (396)
Q Consensus 361 ~~~e~e~ag~~~~~~l~~Gl~~Gs~~s~~ 389 (396)
++++|..+..+......+|..+|..++-.
T Consensus 120 ~~~~r~~~~~~~~~~~~~g~~~g~~~~~~ 148 (485)
T TIGR00711 120 PPEKRGRAMAIWGLTVLVAPALGPTLGGW 148 (485)
T ss_pred CHHHHHHHHHHHHHHHHHHhhhhhccHhH
Confidence 99999998888888888888888776543
No 150
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=84.94 E-value=3.3 Score=42.74 Aligned_cols=113 Identities=15% Similarity=0.042 Sum_probs=74.2
Q ss_pred HHHHHHHHHhhhhhhhhccccccccCCcchHHHH-HHHHHHHHHHHHhhcccCC---chHHHHHHHHHhhccccccceee
Q 016029 278 VVLIAMYNVGDLIGRYIPLLKFFKLESRKYITAA-TLSRFLLVPAFYFTAKYGD---QGWMIMLTSFLGLSNGYLTVCVL 353 (396)
Q Consensus 278 ~~~~~~fn~gD~iGR~l~~~~~~~~~~~~~l~i~-sl~R~~fiplfll~~~~~~---d~~~~i~~~lfgltnGyl~t~~m 353 (396)
-.....+++|-.+|..+.+...=+ .+||..... .+.-.+...+..+.....+ .+..++.-++.|+..|-......
T Consensus 59 ~~~~~~~~ig~~ig~~~~g~l~d~-~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~ 137 (502)
T TIGR00887 59 AAVNGSASIGTLAGQLFFGWLADK-LGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSA 137 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 355677888888888776553212 244543322 2222222221111111111 23455678899999998888888
Q ss_pred eccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 016029 354 TAAPKGYKGPEQNALGNLLVLFLLGGIFAGATLDWLWL 391 (396)
Q Consensus 354 i~~p~~v~~~e~e~ag~~~~~~l~~Gl~~Gs~~s~~~~ 391 (396)
.+..+..++++|..+..++..+..+|..+|..++..+.
T Consensus 138 ~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~ 175 (502)
T TIGR00887 138 IITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVL 175 (502)
T ss_pred HHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888899999999999999999999999998876543
No 151
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=84.76 E-value=18 Score=28.75 Aligned_cols=94 Identities=14% Similarity=0.161 Sum_probs=52.3
Q ss_pred hhHHHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHHHHHhhhhhhhccchhhcc
Q 016029 42 YQPFALITLAILAYHEAKIDTRRRIIFGYILFFASSLLVLVLDLATSGKGGLGTFIGICVISGAFGVADANVQGGMVGDL 121 (396)
Q Consensus 42 ~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~i~~~~~~~i~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la 121 (396)
+.....+......++.+|.+.+..+..+..+..+..+... ..+ .++..+....+.|.+.+..+.......
T Consensus 7 ~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~---~~~-------~~~~~~~~~~~~g~~~~~~~~~~~~~~ 76 (141)
T TIGR00880 7 YALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFA---LSS-------NITVLIIARFLQGFGAAFALVAGAALI 76 (141)
T ss_pred ehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHH---Hhc-------cHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 4555566666666777887766655555555444433322 111 144455566778888887777777764
Q ss_pred c-cCCHHH----HHHHHhhhhhHhHHHHH
Q 016029 122 S-FMTSEL----IQSFLAGLAASGAITSA 145 (396)
Q Consensus 122 ~-~~p~~~----~~a~~~G~g~aGi~~s~ 145 (396)
. ..|++. .+....++.+++.+...
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 105 (141)
T TIGR00880 77 ADIYPPEERGVALGLMSAGIALGPLLGPP 105 (141)
T ss_pred HHHCChhhhhHHHHHHHHhHHHHHHHhHH
Confidence 4 456543 23344455555544443
No 152
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=83.91 E-value=7.7 Score=39.51 Aligned_cols=33 Identities=15% Similarity=0.203 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhhhhhhhccchhhcccc-CCHHH
Q 016029 96 FIGICVISGAFGVADANVQGGMVGDLSF-MTSEL 128 (396)
Q Consensus 96 f~~~l~~~~~~g~~~~~~q~s~~~la~~-~p~~~ 128 (396)
++...+..++.|++.+.......++... .|++.
T Consensus 333 ~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~ 366 (455)
T TIGR00892 333 YTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQR 366 (455)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHH
Confidence 4444455566777777776666676543 46554
No 153
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=83.29 E-value=2.3 Score=43.33 Aligned_cols=63 Identities=11% Similarity=0.021 Sum_probs=43.2
Q ss_pred hcccCCchHHHHHHHHHhhccccccceeeeccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHH
Q 016029 325 TAKYGDQGWMIMLTSFLGLSNGYLTVCVLTAAPKGYKGPEQNALGNLLVLFLLGGIFAGATLD 387 (396)
Q Consensus 325 ~~~~~~d~~~~i~~~lfgltnGyl~t~~mi~~p~~v~~~e~e~ag~~~~~~l~~Gl~~Gs~~s 387 (396)
|...++-+...+.-++.|+.+|......+.+..+..+++||..+..+......+|..+|..++
T Consensus 116 ~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~ 178 (467)
T PRK09556 116 GSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVA 178 (467)
T ss_pred hcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHH
Confidence 333334444555677888887776666666667777888888887777777777777776665
No 154
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=82.96 E-value=4.3 Score=40.76 Aligned_cols=108 Identities=9% Similarity=0.058 Sum_probs=62.1
Q ss_pred HHHHHHHhhhhhhhhccccccccCCcchHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHhhccccccceeeeccCCC
Q 016029 280 LIAMYNVGDLIGRYIPLLKFFKLESRKYITAATLSRFLLVPAFYFTAKYGDQGWMIMLTSFLGLSNGYLTVCVLTAAPKG 359 (396)
Q Consensus 280 ~~~~fn~gD~iGR~l~~~~~~~~~~~~~l~i~sl~R~~fiplfll~~~~~~d~~~~i~~~lfgltnGyl~t~~mi~~p~~ 359 (396)
....|.++-.+|....+...=+ -+||.+... .-+++....++|..-++.+...+.-++.|+.+|..........++.
T Consensus 56 ~~s~~~~~~~~~~~~~G~l~dr-~Grr~~l~~--~~~~~~~~~~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~ 132 (413)
T PRK15403 56 SVSLYLAGGMALQWLLGPLSDR-IGRRPVLIT--GALIFTLACAATLFTTSMTQFLIARFIQGTSICFIATVGYVTVQEA 132 (413)
T ss_pred HHHHHHHHHHHHHHhhhHHHHH-cCchHHHHH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3556666666666654432112 234443333 2344444445555445555666677888998887665555555555
Q ss_pred CCchhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 016029 360 YKGPEQNALGNLLVLFLLGGIFAGATLDWLW 390 (396)
Q Consensus 360 v~~~e~e~ag~~~~~~l~~Gl~~Gs~~s~~~ 390 (396)
.+++++..+-.+......+|-.+|..++-.+
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l 163 (413)
T PRK15403 133 FGQTKGIKLMAIITSIVLVAPIIGPLSGAAL 163 (413)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677776666666666666666666665443
No 155
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=82.19 E-value=15 Score=37.84 Aligned_cols=145 Identities=17% Similarity=0.116 Sum_probs=73.0
Q ss_pred hhHHHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHHHHHhhhhhhhccchhhcc
Q 016029 42 YQPFALITLAILAYHEAKIDTRRRIIFGYILFFASSLLVLVLDLATSGKGGLGTFIGICVISGAFGVADANVQGGMVGDL 121 (396)
Q Consensus 42 ~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~i~~~~~~~i~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la 121 (396)
.++-++.+|++.-++++++..+.-.-..++++++++++ ...+..++ .+.....+++ .-=+++|+ --++=|.++
T Consensus 93 A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~-~~~s~~~~-~~~~~m~~L~-~~R~~LGi----GIGGDYPlS 165 (538)
T KOG0252|consen 93 ALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSAL-SGLSVGTT-SPLGVMMTLC-FFRFLLGI----GIGGDYPLS 165 (538)
T ss_pred HHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHH-hccCCCCC-CCcchhhHHH-HHHHHhhc----cccCCCcch
Confidence 34446678888889999988877776778888888873 32332221 1111111211 11133333 334455554
Q ss_pred ccCCHHH---------HHHHHhhhhhHhHHHHHHHHHHHhhccCCccc----cchhh--hHHhHHHHHHHHHHHHHHHHH
Q 016029 122 SFMTSEL---------IQSFLAGLAASGAITSALRLITKAAFENSKDG----LRKGA--LLFFAISSFFEFLCVILYAFV 186 (396)
Q Consensus 122 ~~~p~~~---------~~a~~~G~g~aGi~~s~~~ii~~~~~~~~~~~----~~~~a--~~yF~ia~~~~~~~~~~~~~~ 186 (396)
+.--+|+ ..++.+=||.+=+...++.+|..++++....+ ++... .+=|.++++. .+...|+
T Consensus 166 AtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vp--a~~~ly~-- 241 (538)
T KOG0252|consen 166 ATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVP--ALLVLYF-- 241 (538)
T ss_pred HHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHH--HHHHHHh--
Confidence 4333333 24455556666666666666666666532221 12222 2334555543 4444444
Q ss_pred cCCChHHHHHH
Q 016029 187 FPKIPIVKYYR 197 (396)
Q Consensus 187 l~k~~~~~~~~ 197 (396)
-.|+|-.+.|.
T Consensus 242 Rl~M~Et~~Y~ 252 (538)
T KOG0252|consen 242 RLKMPETARYT 252 (538)
T ss_pred hhcCCcchhHH
Confidence 33445555554
No 156
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=81.49 E-value=34 Score=35.03 Aligned_cols=25 Identities=16% Similarity=0.390 Sum_probs=13.4
Q ss_pred HHHHHHHHHhhccCCcchhhHHHHH
Q 016029 47 LITLAILAYHEAKIDTRRRIIFGYI 71 (396)
Q Consensus 47 l~~~~~~~~~~~~~~~~~Ri~~~~~ 71 (396)
.+...+...+.+|+..+.-+..+.+
T Consensus 300 ~~~~~~~g~l~dr~grr~~~~~~~~ 324 (490)
T PRK10642 300 LFVQPVMGLLSDRFGRRPFVILGSV 324 (490)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHH
Confidence 3344445567777766554444443
No 157
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=80.79 E-value=9.7 Score=39.34 Aligned_cols=114 Identities=14% Similarity=0.069 Sum_probs=81.5
Q ss_pred chHHHHHHHHHHHhhhhhhhhccccccccCCcchHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHhhccccccceee
Q 016029 274 GWYAVVLIAMYNVGDLIGRYIPLLKFFKLESRKYITAATLSRFLLVPAFYFTAKYGDQGWMIMLTSFLGLSNGYLTVCVL 353 (396)
Q Consensus 274 ~w~~~~~~~~fn~gD~iGR~l~~~~~~~~~~~~~l~i~sl~R~~fiplfll~~~~~~d~~~~i~~~lfgltnGyl~t~~m 353 (396)
+|.......+|.+|..+|-.+.+...-+ -.||.++..++. +.+..=+++..-++-+.++++-++-|+..+-..+...
T Consensus 117 ~~~~~~~~s~~~~G~~vG~~i~g~lsD~-~GRk~~~~~~~~--~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~ 193 (521)
T KOG0255|consen 117 STLVALGQSLFFLGVLVGSLIFGPLSDR-FGRKPVLLVSLL--LFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVGF 193 (521)
T ss_pred HhHHHHHHHHHHHHHHHHHhhheehHhh-cccHHHHHHHHH--HHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHhH
Confidence 4666777889999999999886553222 356665555442 2222224445556677778889999999988888888
Q ss_pred eccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 016029 354 TAAPKGYKGPEQNALGNLLVLFLLGGIFAGATLDWLW 390 (396)
Q Consensus 354 i~~p~~v~~~e~e~ag~~~~~~l~~Gl~~Gs~~s~~~ 390 (396)
.+.-+.+.+++|..++.+..+..+.|...-...+++.
T Consensus 194 ~~~~E~~~~~~R~~~~~~~~~~~~~~~~~~~~~a~~~ 230 (521)
T KOG0255|consen 194 GLVAEIVSPKQRGLALTLGGFFFVGGLMLPAGAAYIT 230 (521)
T ss_pred hhheeecCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888999999999999997777777776666655543
No 158
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=79.82 E-value=13 Score=36.73 Aligned_cols=105 Identities=10% Similarity=0.117 Sum_probs=51.5
Q ss_pred HHHHHHHhhhhhhhhccccccccCCcchHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHhhccccccceeeeccCCC
Q 016029 280 LIAMYNVGDLIGRYIPLLKFFKLESRKYITAATLSRFLLVPAFYFTAKYGDQGWMIMLTSFLGLSNGYLTVCVLTAAPKG 359 (396)
Q Consensus 280 ~~~~fn~gD~iGR~l~~~~~~~~~~~~~l~i~sl~R~~fiplfll~~~~~~d~~~~i~~~lfgltnGyl~t~~mi~~p~~ 359 (396)
....|.++-.++....+...=+. ++|.....+. .+.....+++...++.+..++..++.|+..|......+..-++.
T Consensus 53 ~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~--~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~ 129 (406)
T PRK15402 53 SMTAYLAGGMFLQWLLGPLSDRI-GRRPVMLAGV--AFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQES 129 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHH--HHHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHH
Confidence 35567777766665543311122 3343332222 22222222222223444455567777887776655555444555
Q ss_pred CCchhhhhhhhHHHHHHHHHHHHHHHHH
Q 016029 360 YKGPEQNALGNLLVLFLLGGIFAGATLD 387 (396)
Q Consensus 360 v~~~e~e~ag~~~~~~l~~Gl~~Gs~~s 387 (396)
.++++|..+..++......|..+|..++
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~g~~i~ 157 (406)
T PRK15402 130 FEEADAIKITALMANVALLAPLLGPLVG 157 (406)
T ss_pred hChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666665544444444445555555554
No 159
>PRK09528 lacY galactoside permease; Reviewed
Probab=78.78 E-value=53 Score=32.63 Aligned_cols=76 Identities=8% Similarity=0.083 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHHHHHhhhhhhhccchhhcc-c
Q 016029 44 PFALITLAILAYHEAKIDTRRRIIFGYILFFASSLLVLVLDLATSGKGGLGTFIGICVISGAFGVADANVQGGMVGDL-S 122 (396)
Q Consensus 44 ~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~i~~~~~~~i~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la-~ 122 (396)
....+......++.+|.+.+..+..+..+..+...+.. ..+ + .+.......+.|.+.+.......... .
T Consensus 273 ~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~---~~~----~---~~~~~~~~~l~g~~~~~~~~~~~~~~~~ 342 (420)
T PRK09528 273 FLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSG---FAT----G---PLEVSILKLLHAFEVPFLLVGVFKYITL 342 (420)
T ss_pred HHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHH---hcc----c---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556666788888877665555555444433332 221 1 12222334455666666665655554 3
Q ss_pred cCCHHHH
Q 016029 123 FMTSELI 129 (396)
Q Consensus 123 ~~p~~~~ 129 (396)
.+|++..
T Consensus 343 ~~~~~~~ 349 (420)
T PRK09528 343 NFDVRLS 349 (420)
T ss_pred HcCccce
Confidence 4666653
No 160
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=78.77 E-value=7.8 Score=39.54 Aligned_cols=116 Identities=13% Similarity=0.096 Sum_probs=79.1
Q ss_pred eehhhhhhhhhhHhhchHHHHhhhcCCCCCcceeehhhhHHHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhh
Q 016029 5 WLLGNGCLFSWNSMLTVVDYYVFLFPQYHPSRILTLVYQPFALITLAILAYHEAKIDTRRRIIFGYILFFASSLLVLVLD 84 (396)
Q Consensus 5 ~~lGi~~LlpwN~~ita~~Yf~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~i~~~~~~~i~ 84 (396)
-++-.+.-+-|+.+-.-.||.++.|...+...|+++.||+..+...+...++.+|..++.-...+-..+.+...+ =++.
T Consensus 51 slL~~SN~~qWI~ya~i~n~~~~~Ygs~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~I-r~is 129 (480)
T KOG2563|consen 51 SLLNFSNGMQWIQYAPINNYVNSFYGSSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWI-RLIS 129 (480)
T ss_pred HHHHhcCcchheeehhHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHH-hhhc
Confidence 344455556788888889999999886566789999999998888888888999988888888888888766543 2222
Q ss_pred hccCCCCCchHHH--HHHHHHHHHhhhhhhhccchhhccc-----cCCHHH
Q 016029 85 LATSGKGGLGTFI--GICVISGAFGVADANVQGGMVGDLS-----FMTSEL 128 (396)
Q Consensus 85 ~~~~~~~~~~~f~--~~l~~~~~~g~~~~~~q~s~~~la~-----~~p~~~ 128 (396)
..+ ..+ ..|+ +++..- ..++..|--++++.+ -||++.
T Consensus 130 s~p-~v~--~~f~~~l~~~Gq----~iaa~Aq~Fim~lPskiA~~WF~~~q 173 (480)
T KOG2563|consen 130 SLP-FVP--PLFRRPLTHTGQ----SIAAAAQPFILGLPSKIAAVWFPPDQ 173 (480)
T ss_pred cCc-ccc--ccchhhhhHHhH----HHHHHhhhHhhccccHHHHhhCCcch
Confidence 221 111 2244 444443 446677777888733 356554
No 161
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=78.17 E-value=8.6 Score=38.22 Aligned_cols=109 Identities=13% Similarity=0.055 Sum_probs=55.0
Q ss_pred HHHHHHHHhhhhhhhhccccccccCCcchHHHHHHHHHHHHHHHHhhcccCCchHH-HHHHHHHhhccccccceeeeccC
Q 016029 279 VLIAMYNVGDLIGRYIPLLKFFKLESRKYITAATLSRFLLVPAFYFTAKYGDQGWM-IMLTSFLGLSNGYLTVCVLTAAP 357 (396)
Q Consensus 279 ~~~~~fn~gD~iGR~l~~~~~~~~~~~~~l~i~sl~R~~fiplfll~~~~~~d~~~-~i~~~lfgltnGyl~t~~mi~~p 357 (396)
.....|.++..++....+...=+..++|.+....++-.+..-++.+-....++++. .+.-++.|+..|-.........+
T Consensus 52 ~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~ 131 (402)
T TIGR00897 52 SAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVV 131 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHH
Confidence 34567777777776665432112222333333333332221111111111223333 33455566655443333334455
Q ss_pred CCCCchhhhhhhhHHHHHHHHHH-HHHHHHH
Q 016029 358 KGYKGPEQNALGNLLVLFLLGGI-FAGATLD 387 (396)
Q Consensus 358 ~~v~~~e~e~ag~~~~~~l~~Gl-~~Gs~~s 387 (396)
+..+++||..+..+.......|. .+|..++
T Consensus 132 ~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~ 162 (402)
T TIGR00897 132 YNTKQDNLSSAVGWFWAVYSIGIGVFGSYYS 162 (402)
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66788899998888877777776 4566554
No 162
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=77.93 E-value=17 Score=36.65 Aligned_cols=51 Identities=10% Similarity=-0.132 Sum_probs=31.7
Q ss_pred HHHHHHHhhccccccceeeeccCCCCCchhhhhhhhHHHHHHHHHHHHHHH
Q 016029 335 IMLTSFLGLSNGYLTVCVLTAAPKGYKGPEQNALGNLLVLFLLGGIFAGAT 385 (396)
Q Consensus 335 ~i~~~lfgltnGyl~t~~mi~~p~~v~~~e~e~ag~~~~~~l~~Gl~~Gs~ 385 (396)
++..++.|+..|-..........+..+++||..+..+......+|-.+|..
T Consensus 122 ~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~ 172 (438)
T TIGR00712 122 FVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPL 172 (438)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHH
Confidence 345667777776654444444455567778888877766666666555543
No 163
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=77.92 E-value=18 Score=35.60 Aligned_cols=107 Identities=13% Similarity=0.077 Sum_probs=55.0
Q ss_pred HHHHHHHHhhhhhhhhccccccccCCcchHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHhhccccccceeeeccCC
Q 016029 279 VLIAMYNVGDLIGRYIPLLKFFKLESRKYITAATLSRFLLVPAFYFTAKYGDQGWMIMLTSFLGLSNGYLTVCVLTAAPK 358 (396)
Q Consensus 279 ~~~~~fn~gD~iGR~l~~~~~~~~~~~~~l~i~sl~R~~fiplfll~~~~~~d~~~~i~~~lfgltnGyl~t~~mi~~p~ 358 (396)
.....+.++..++....+.-.=+. ++|..... .........+++...++.+...+..++.|+..|..........++
T Consensus 47 ~~~~~~~~~~~~~~~~~G~l~Dr~-grr~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~ 123 (394)
T PRK11652 47 AVMAAYLLTYGLSQLFYGPLSDRV-GRRPVILV--GMSIFILGTLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRD 123 (394)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHH--HHHHHHHHHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 344556666666655543311122 33443322 223333332333333444455556778888877655554444455
Q ss_pred CCCchhhhhhhhHHHHHHHHHHHHHHHHHH
Q 016029 359 GYKGPEQNALGNLLVLFLLGGIFAGATLDW 388 (396)
Q Consensus 359 ~v~~~e~e~ag~~~~~~l~~Gl~~Gs~~s~ 388 (396)
..+++++..+.........+|..+|..++-
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~ 153 (394)
T PRK11652 124 LYEGTQLRHANSLLNMGILVSPLLAPLIGG 153 (394)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566667766666666666666666555443
No 164
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=77.59 E-value=28 Score=36.11 Aligned_cols=148 Identities=13% Similarity=0.009 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHhhhhccccCceEeeccCCCCC-CchHHHHHHHHHHHhhhhhhhhccccccccCCcchHHHHHHHHHH
Q 016029 239 LQNIDYAIDMFVIYTLTLSIFPGFLSEDTGSHSL-GGWYAVVLIAMYNVGDLIGRYIPLLKFFKLESRKYITAATLSRFL 317 (396)
Q Consensus 239 k~i~~~~~~~~l~f~vTl~vFP~i~~~~~~~~~~-~~w~~~~~~~~fn~gD~iGR~l~~~~~~~~~~~~~l~i~sl~R~~ 317 (396)
|.+|.-.++-++..+..-.++|+.-.-..+-|.. ++=+.=+.....++|-.++-..-++..-+..+.| +-+.+.|++
T Consensus 34 rsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k--~Pli~s~ii 111 (488)
T KOG2325|consen 34 RSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVK--KPLIVSFLI 111 (488)
T ss_pred HhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcc--cCHHHHHHH
Confidence 5677777888888777777777764322221121 1112223355588888888766544221222212 223445554
Q ss_pred HHH--HHHhhc-ccCCch--HHHHHHHHHhhccccccceeeeccC-CCCCchhhhhhhhHH--HHHHHHHHHHHHHHHH
Q 016029 318 LVP--AFYFTA-KYGDQG--WMIMLTSFLGLSNGYLTVCVLTAAP-KGYKGPEQNALGNLL--VLFLLGGIFAGATLDW 388 (396)
Q Consensus 318 fip--lfll~~-~~~~d~--~~~i~~~lfgltnGyl~t~~mi~~p-~~v~~~e~e~ag~~~--~~~l~~Gl~~Gs~~s~ 388 (396)
.+. +..+|. +.++++ ++.+-=++.|+.+|=.+.+==..+- ..++++-|..|+.-. .+...+|-.+|.+++.
T Consensus 112 ~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~ 190 (488)
T KOG2325|consen 112 AIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTP 190 (488)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhh
Confidence 443 222232 334432 2333356778776544433222222 234455555555555 5566666666665554
No 165
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=76.62 E-value=10 Score=38.03 Aligned_cols=66 Identities=11% Similarity=0.032 Sum_probs=48.5
Q ss_pred hcccCCchHHHHHHHHHhhccccccceeeeccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 016029 325 TAKYGDQGWMIMLTSFLGLSNGYLTVCVLTAAPKGYKGPEQNALGNLLVLFLLGGIFAGATLDWLW 390 (396)
Q Consensus 325 ~~~~~~d~~~~i~~~lfgltnGyl~t~~mi~~p~~v~~~e~e~ag~~~~~~l~~Gl~~Gs~~s~~~ 390 (396)
+..-++.+..++.-++.|+.+|-.....+.+..+..++++|..+..+.......|..+|..++-.+
T Consensus 90 ~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l 155 (412)
T TIGR02332 90 TMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYI 155 (412)
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333345555666778899999866666666666677888899988888888888888888886544
No 166
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=75.79 E-value=10 Score=38.07 Aligned_cols=63 Identities=13% Similarity=0.000 Sum_probs=46.8
Q ss_pred CchHHHHHHHHHhhccccccceeeeccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 016029 330 DQGWMIMLTSFLGLSNGYLTVCVLTAAPKGYKGPEQNALGNLLVLFLLGGIFAGATLDWLWLI 392 (396)
Q Consensus 330 ~d~~~~i~~~lfgltnGyl~t~~mi~~p~~v~~~e~e~ag~~~~~~l~~Gl~~Gs~~s~~~~~ 392 (396)
+-+.+.+..++.|+..|.+.+....+..+..++++|+..-.+...+..+|..+|..++-.++.
T Consensus 93 ~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~ 155 (410)
T TIGR00885 93 NYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLIL 155 (410)
T ss_pred cHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334445567888999988887666666666677778878888888888899999888766653
No 167
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=75.30 E-value=55 Score=33.85 Aligned_cols=73 Identities=8% Similarity=0.105 Sum_probs=46.7
Q ss_pred HHhhccCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHHHHHhhhhhhhccchhhccccCCHH
Q 016029 54 AYHEAKIDTRRRIIFGYILFFASSLLVLVLDLATSGKGGLGTFIGICVISGAFGVADANVQGGMVGDLSFMTSE 127 (396)
Q Consensus 54 ~~~~~~~~~~~Ri~~~~~~~~i~~~~~~~i~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la~~~p~~ 127 (396)
.++.+|.+...|+..|+.+..+..+++..-....++. +....+......++.|++..+.....++++...-|+
T Consensus 341 ~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~-~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~ 413 (500)
T PRK09584 341 NKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDA-GIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQ 413 (500)
T ss_pred HHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcH
Confidence 3456677788888899888877766654332211111 122233345566778999999999999987665444
No 168
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=75.26 E-value=1.1e+02 Score=31.73 Aligned_cols=249 Identities=15% Similarity=0.108 Sum_probs=114.9
Q ss_pred HHhhhhhhhccchhhccccCCHHH------HHHHHhhhhhHhHHHHHHHHHHHhhccCCccccchhhhHHhHHHHHHHHH
Q 016029 105 AFGVADANVQGGMVGDLSFMTSEL------IQSFLAGLAASGAITSALRLITKAAFENSKDGLRKGALLFFAISSFFEFL 178 (396)
Q Consensus 105 ~~g~~~~~~q~s~~~la~~~p~~~------~~a~~~G~g~aGi~~s~~~ii~~~~~~~~~~~~~~~a~~yF~ia~~~~~~ 178 (396)
+.+.+-++..-..=++.+.+.+++ .+.-|.+.++++++++++-.-.....++++ .+.-|+..+.++.++
T Consensus 121 l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~-----~~~g~~~~~~~~~vi 195 (467)
T COG2211 121 LLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGD-----KALGYQGTALVLGVI 195 (467)
T ss_pred HHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-----chhhHHHHHHHHHHH
Confidence 455666666666666666664333 355567888888888888864444443321 255566666666555
Q ss_pred HHHHHHHHcCCChHHHHHHHhhhccCCccccchhhhccCccCcccccccccccccHH---HHHHHHHHHH------HHHH
Q 016029 179 CVILYAFVFPKIPIVKYYRNKAASEGSKTVAADLAAGGIQMLSKEEVEKCSERFSNK---QLLLQNIDYA------IDMF 249 (396)
Q Consensus 179 ~~~~~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~k~i~~~~------~~~~ 249 (396)
..+..+++... -+++..+.+ +.++ .++.+.+ ...+++++.. +..+
T Consensus 196 ~~i~~l~~~~~--------v~ER~~~~~--------------~~~~----~~~~~~~~~~~~~~~Nrp~~~~l~~~l~~~ 249 (467)
T COG2211 196 GVILLLFCFFN--------VKERVVETQ--------------PTKT----GVKLKLKDSFLLIFKNRPLLLLLLMNLLLF 249 (467)
T ss_pred HHHHHHHHHHH--------hhcccCccc--------------cCcc----cccccHHHHHHHHHccchHHHHHHHHHHHH
Confidence 33333212111 111110000 0000 0111222 2223333322 2222
Q ss_pred HHhhhhccccCceEeeccCCCCCCchHHHHHHHHHHHhhhhhhhhc-cccccccCCcchHHHHHHHH-HHH-HHHHHhhc
Q 016029 250 VIYTLTLSIFPGFLSEDTGSHSLGGWYAVVLIAMYNVGDLIGRYIP-LLKFFKLESRKYITAATLSR-FLL-VPAFYFTA 326 (396)
Q Consensus 250 l~f~vTl~vFP~i~~~~~~~~~~~~w~~~~~~~~fn~gD~iGR~l~-~~~~~~~~~~~~l~i~sl~R-~~f-iplfll~~ 326 (396)
..+-+.-++++=....+.+ .+++.+.........+-.+|-.+. .+. ++..+|.++....+= .+- .-+++..
T Consensus 250 ~~~~i~~s~~~yy~~y~lg---~~~l~~~~~~~~~~~~~l~~~~~~p~L~--~~~gkk~~~~~~~~~~~i~~~~~~f~~- 323 (467)
T COG2211 250 IAFNIRGSIMVYYVTYVLG---DPELFAYLLLLASGAGLLIGLILWPRLV--KKFGKKKLFLIGLLLLAVGYLLLYFTP- 323 (467)
T ss_pred HHHHHHhhhhheeEEEEcC---ChHHHHHHHHHHHHHHHHHHHHhHHHHH--HHhchHHHHHHHHHHHHHHHHHHHhhc-
Confidence 2222333333333322221 124555555555555555544432 221 112334444333211 111 1111111
Q ss_pred ccCCchHHHHHHHHHhhccccccceeeeccCCCCCchh----hh---hhhhHHHHHHHHHHHHHHHHHHHHH
Q 016029 327 KYGDQGWMIMLTSFLGLSNGYLTVCVLTAAPKGYKGPE----QN---ALGNLLVLFLLGGIFAGATLDWLWL 391 (396)
Q Consensus 327 ~~~~d~~~~i~~~lfgltnGyl~t~~mi~~p~~v~~~e----~e---~ag~~~~~~l~~Gl~~Gs~~s~~~~ 391 (396)
.++.+..++..++.++-.|-...+--..-|..++-+| ++ ..-..++|+.=.|.++|+.+.-..+
T Consensus 324 -~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L 394 (467)
T COG2211 324 -AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWIL 394 (467)
T ss_pred -CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1233334444566666666666666666677776433 23 3346788888889988886654443
No 169
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=75.15 E-value=1.1e+02 Score=31.72 Aligned_cols=102 Identities=12% Similarity=0.125 Sum_probs=57.4
Q ss_pred HHHHHHHHHHhhhhhhhhcccccccc-CCcchHHHHHHHHHHHHHHHHhh----cc--cCCchHHHHHHHHHhhcccccc
Q 016029 277 AVVLIAMYNVGDLIGRYIPLLKFFKL-ESRKYITAATLSRFLLVPAFYFT----AK--YGDQGWMIMLTSFLGLSNGYLT 349 (396)
Q Consensus 277 ~~~~~~~fn~gD~iGR~l~~~~~~~~-~~~~~l~i~sl~R~~fiplfll~----~~--~~~d~~~~i~~~lfgltnGyl~ 349 (396)
.....++=|+.-.+|-.+..+..-+. ++++..+..++.=...+|+.-+- +. .++.+-++++-++.|+..|-..
T Consensus 319 l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~q 398 (477)
T PF11700_consen 319 LIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQ 398 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHH
Confidence 45566677777777777655432122 22224555555555566665443 11 3466777778889999998777
Q ss_pred ceeeeccCCCCCchhhhhhhhHHHHHHHHHHH
Q 016029 350 VCVLTAAPKGYKGPEQNALGNLLVLFLLGGIF 381 (396)
Q Consensus 350 t~~mi~~p~~v~~~e~e~ag~~~~~~l~~Gl~ 381 (396)
+.+=..-.+..|+ +|| +.+.+++-..|=.
T Consensus 399 s~sRs~~~~LiP~-g~e--~efFgly~i~gk~ 427 (477)
T PF11700_consen 399 SASRSLFSRLIPP-GRE--AEFFGLYAITGKA 427 (477)
T ss_pred HHHHHHHHHhCCC-chh--hHHHHHHHHHHHH
Confidence 6653333333333 343 5555555554433
No 170
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=74.09 E-value=1.1e+02 Score=31.56 Aligned_cols=49 Identities=18% Similarity=0.043 Sum_probs=29.0
Q ss_pred HHHHHHHHhhhhhhhccchhhcccc-CCHH--H---HHH-HHhhhhhHhHHHHHHH
Q 016029 99 ICVISGAFGVADANVQGGMVGDLSF-MTSE--L---IQS-FLAGLAASGAITSALR 147 (396)
Q Consensus 99 ~l~~~~~~g~~~~~~q~s~~~la~~-~p~~--~---~~a-~~~G~g~aGi~~s~~~ 147 (396)
.++...+..++....|+..-++.+. .|++ . ..+ .....+++++++.++-
T Consensus 117 ~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g 172 (477)
T TIGR01301 117 FVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAG 172 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556678888899988888666 4543 2 122 2344455666655544
No 171
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=73.62 E-value=24 Score=36.38 Aligned_cols=58 Identities=9% Similarity=0.014 Sum_probs=34.2
Q ss_pred CCchHHHHHHHHHhhccccccceeeeccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHH
Q 016029 329 GDQGWMIMLTSFLGLSNGYLTVCVLTAAPKGYKGPEQNALGNLLVLFLLGGIFAGATLD 387 (396)
Q Consensus 329 ~~d~~~~i~~~lfgltnGyl~t~~mi~~p~~v~~~e~e~ag~~~~~~l~~Gl~~Gs~~s 387 (396)
++-+...++-++.|+..+.. ...+-...+.-+++||..+-.+..-.-+.|..++..+.
T Consensus 126 ~s~~~lli~r~l~Gigg~~f-~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~ 183 (462)
T PRK15034 126 TPFGIFIVIALLCGFAGANF-ASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVA 183 (462)
T ss_pred CCHHHHHHHHHHHHHHHHhH-HHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHH
Confidence 34445556688888864432 33444445556777888877666544555665555544
No 172
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=73.45 E-value=7.6 Score=38.54 Aligned_cols=56 Identities=11% Similarity=0.011 Sum_probs=38.1
Q ss_pred HHHHHHHhhccccccceeeeccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 016029 335 IMLTSFLGLSNGYLTVCVLTAAPKGYKGPEQNALGNLLVLFLLGGIFAGATLDWLW 390 (396)
Q Consensus 335 ~i~~~lfgltnGyl~t~~mi~~p~~v~~~e~e~ag~~~~~~l~~Gl~~Gs~~s~~~ 390 (396)
.++.++.++.+.......-.+.++..+++||..++.+......+|..+|+.++..+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l 153 (402)
T PRK11902 98 AGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWL 153 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 33445555544444334445567888888999999998888888888887766543
No 173
>TIGR00901 2A0125 AmpG-related permease.
Probab=73.07 E-value=18 Score=34.87 Aligned_cols=55 Identities=7% Similarity=0.056 Sum_probs=39.2
Q ss_pred HHHHHhhccccccceeeeccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 016029 337 LTSFLGLSNGYLTVCVLTAAPKGYKGPEQNALGNLLVLFLLGGIFAGATLDWLWL 391 (396)
Q Consensus 337 ~~~lfgltnGyl~t~~mi~~p~~v~~~e~e~ag~~~~~~l~~Gl~~Gs~~s~~~~ 391 (396)
+.++.++..+........+.++..++|||..+..+......+|..+|..++..+.
T Consensus 89 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~ 143 (356)
T TIGR00901 89 LAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLA 143 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444333333445678888899999999999999999999998886544
No 174
>PRK15075 citrate-proton symporter; Provisional
Probab=72.19 E-value=32 Score=34.55 Aligned_cols=56 Identities=13% Similarity=-0.021 Sum_probs=39.0
Q ss_pred HHHHHHHhhccccccceeeeccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 016029 335 IMLTSFLGLSNGYLTVCVLTAAPKGYKGPEQNALGNLLVLFLLGGIFAGATLDWLW 390 (396)
Q Consensus 335 ~i~~~lfgltnGyl~t~~mi~~p~~v~~~e~e~ag~~~~~~l~~Gl~~Gs~~s~~~ 390 (396)
++.-++.|+..|........+..+..++++|..+..+.......|..+|..++...
T Consensus 121 ~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l 176 (434)
T PRK15075 121 LLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLL 176 (434)
T ss_pred HHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567788887766655566777888888998888777766666666666555443
No 175
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=71.65 E-value=1.1e+02 Score=30.09 Aligned_cols=113 Identities=13% Similarity=0.041 Sum_probs=63.5
Q ss_pred HHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHHHHHhhhhhhhccchhhccccCC
Q 016029 46 ALITLAILAYHEAKIDTRRRIIFGYILFFASSLLVLVLDLATSGKGGLGTFIGICVISGAFGVADANVQGGMVGDLSFMT 125 (396)
Q Consensus 46 ~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~i~~~~~~~i~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la~~~p 125 (396)
..+...+..++.+|.+.+.-+..+.+...+..+... .. ...+..+....+-|++-++...+.+.+....|
T Consensus 253 ~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~---~~-------~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~~ 322 (382)
T TIGR00902 253 EIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIG---AI-------EAFPLIFLLQILHCGTFAVCHLAAMRYIAAQP 322 (382)
T ss_pred HHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHH---hH-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 334444555677888777666666666555544332 11 11444555667788888888888888877777
Q ss_pred HHHH---HHHH--hhhhhHhHHHHHHHHHHHhhccCCccccchhhhHHhHHHHHHHH
Q 016029 126 SELI---QSFL--AGLAASGAITSALRLITKAAFENSKDGLRKGALLFFAISSFFEF 177 (396)
Q Consensus 126 ~~~~---~a~~--~G~g~aGi~~s~~~ii~~~~~~~~~~~~~~~a~~yF~ia~~~~~ 177 (396)
++.. |++. .+.|++..+.+++. -...|. .+...|+..+.+..+
T Consensus 323 ~~~~~~~q~~~~~~~~g~g~~~g~~~~---G~l~~~------~g~~~~~~~~~~~~~ 370 (382)
T TIGR00902 323 GSEIAKLQALYNALAMGGLIAIFTAFA---GFIYPT------LGAGTFVFMAIIAAA 370 (382)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHh------ccHHHHHHHHHHHHH
Confidence 7653 4432 24445555444433 222211 123457776665543
No 176
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=71.26 E-value=26 Score=33.70 Aligned_cols=55 Identities=13% Similarity=-0.034 Sum_probs=41.4
Q ss_pred HHHHHHHhhccccccceeeeccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 016029 335 IMLTSFLGLSNGYLTVCVLTAAPKGYKGPEQNALGNLLVLFLLGGIFAGATLDWL 389 (396)
Q Consensus 335 ~i~~~lfgltnGyl~t~~mi~~p~~v~~~e~e~ag~~~~~~l~~Gl~~Gs~~s~~ 389 (396)
++.-++.|+..|........+..+..++++|..+..+.......|..+|..++..
T Consensus 100 ~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~ 154 (394)
T TIGR00883 100 LLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLL 154 (394)
T ss_pred HHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345777777777666666677777788899888888888888888888776543
No 177
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=70.19 E-value=61 Score=33.45 Aligned_cols=100 Identities=19% Similarity=0.132 Sum_probs=52.1
Q ss_pred hHhhchHHHHhhhc-CCCCCccee-ehhhhHHHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCc
Q 016029 16 NSMLTVVDYYVFLF-PQYHPSRIL-TLVYQPFALITLAILAYHEAKIDTRRRIIFGYILFFASSLLVLVLDLATSGKGGL 93 (396)
Q Consensus 16 N~~ita~~Yf~~~~-~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~i~~~~~~~i~~~~~~~~~~ 93 (396)
|..-+..-||-.+- .+.+...+. ...+....+....+.+++.+|+..+.-...+.++.++..+.+-..+.
T Consensus 253 ~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~-------- 324 (467)
T COG2211 253 NIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPA-------- 324 (467)
T ss_pred HHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcC--------
Confidence 33444456665443 333333322 23344444445677788889988777777776666666555432331
Q ss_pred hHHHHHHHHHHHHhhhhhhhccchhhcccc
Q 016029 94 GTFIGICVISGAFGVADANVQGGMVGDLSF 123 (396)
Q Consensus 94 ~~f~~~l~~~~~~g~~~~~~q~s~~~la~~ 123 (396)
...++.++..++.+++.+....---++.+.
T Consensus 325 ~~~~l~~~~~~i~~~g~~~~~~l~wam~~d 354 (467)
T COG2211 325 GSVVLIVVALIIAGVGTGIANPLPWAMVAD 354 (467)
T ss_pred cchHHHHHHHHHHHHHhhccccccHHHhcc
Confidence 113334444455556665555444444433
No 178
>PRK03893 putative sialic acid transporter; Provisional
Probab=69.69 E-value=17 Score=36.99 Aligned_cols=107 Identities=12% Similarity=-0.012 Sum_probs=59.4
Q ss_pred HHHHHHHhhhhhhhhccccccccCCcchHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHhhccccccceeeeccCCC
Q 016029 280 LIAMYNVGDLIGRYIPLLKFFKLESRKYITAATLSRFLLVPAFYFTAKYGDQGWMIMLTSFLGLSNGYLTVCVLTAAPKG 359 (396)
Q Consensus 280 ~~~~fn~gD~iGR~l~~~~~~~~~~~~~l~i~sl~R~~fiplfll~~~~~~d~~~~i~~~lfgltnGyl~t~~mi~~p~~ 359 (396)
....+.++-.+|....+...=+. ++|..... ..++.....+++...++-+...+..++.|+..|-.......+..+.
T Consensus 60 ~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~ 136 (496)
T PRK03893 60 LISAAFISRWFGGLLLGAMGDRY-GRRLAMVI--SIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIES 136 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHH--HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666655443321122 33433222 2222222222222233445555667888888776555555555677
Q ss_pred CCchhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 016029 360 YKGPEQNALGNLLVLFLLGGIFAGATLDWL 389 (396)
Q Consensus 360 v~~~e~e~ag~~~~~~l~~Gl~~Gs~~s~~ 389 (396)
.++++|..+-.+......+|-.+|..++-.
T Consensus 137 ~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~ 166 (496)
T PRK03893 137 WPKHLRNKASGFLISGFSIGAVVAAQVYSL 166 (496)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888877777777777777777766543
No 179
>PRK11043 putative transporter; Provisional
Probab=69.30 E-value=25 Score=34.69 Aligned_cols=137 Identities=11% Similarity=0.001 Sum_probs=61.0
Q ss_pred HHHHhhhhccccCceEeeccCCCCCCchHHHHHHHHHHHhhhhhhhhccccccccCCcchHHHHHHHHHHHHHHHHhhcc
Q 016029 248 MFVIYTLTLSIFPGFLSEDTGSHSLGGWYAVVLIAMYNVGDLIGRYIPLLKFFKLESRKYITAATLSRFLLVPAFYFTAK 327 (396)
Q Consensus 248 ~~l~f~vTl~vFP~i~~~~~~~~~~~~w~~~~~~~~fn~gD~iGR~l~~~~~~~~~~~~~l~i~sl~R~~fiplfll~~~ 327 (396)
..+.|+.+-...|.+... .++...++-..-.....+.++-.+|....+...=+. ++|.+..... .+.....+++..
T Consensus 15 ~~~~~~~~~~~~p~~~~i-~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~--~~~~~~~~~~~~ 90 (401)
T PRK11043 15 SMLGFLATDMYLPAFKAI-QADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRY-GRKPVLLAGL--SLFALGSLGMLW 90 (401)
T ss_pred HHHHHHHHHHHHhhHHHH-HHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhc-CCcHHHHHHH--HHHHHHHHHHHH
Confidence 444555555566665321 111111122233445566777677766654421122 3344333222 222222222333
Q ss_pred cCCchHHHHHHHHHhhccccccceeeeccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHH
Q 016029 328 YGDQGWMIMLTSFLGLSNGYLTVCVLTAAPKGYKGPEQNALGNLLVLFLLGGIFAGATLDW 388 (396)
Q Consensus 328 ~~~d~~~~i~~~lfgltnGyl~t~~mi~~p~~v~~~e~e~ag~~~~~~l~~Gl~~Gs~~s~ 388 (396)
.++-+...+..++.|+..|...........+..+++++..+-.........|..+|..++-
T Consensus 91 ~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~ 151 (401)
T PRK11043 91 VESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGA 151 (401)
T ss_pred hcCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555677777665444433333445555555544433333334445555555443
No 180
>PTZ00207 hypothetical protein; Provisional
Probab=68.74 E-value=48 Score=35.33 Aligned_cols=127 Identities=18% Similarity=0.255 Sum_probs=65.4
Q ss_pred HHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHHHHHhhhhhhhccchhhc-cccCCHH---
Q 016029 52 ILAYHEAKIDTRRRIIFGYILFFASSLLVLVLDLATSGKGGLGTFIGICVISGAFGVADANVQGGMVGD-LSFMTSE--- 127 (396)
Q Consensus 52 ~~~~~~~~~~~~~Ri~~~~~~~~i~~~~~~~i~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~l-a~~~p~~--- 127 (396)
....+.+|++.+.=+..+.++..+..++.... .. +.- ...++...+..++.|.+.+....+.... ...||++
T Consensus 80 p~G~L~Dr~G~R~vllig~ll~~iG~ll~ala-~~--~~i-~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp~~RG~ 155 (591)
T PTZ00207 80 PYSFIYDYLGPRPIFVLSMTVFCLGTLLFALT-FQ--EVI-EGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFPSNRGA 155 (591)
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH-hc--ccc-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhHH
Confidence 34566788877776667777776666554422 11 100 1225555555567777776655444444 4557754
Q ss_pred HHHHHHhhhhhHhHHHHHHHHHHHhhccCCccccchhhhHHhHHHHHHHHHHHHHHHHHcCCChH
Q 016029 128 LIQSFLAGLAASGAITSALRLITKAAFENSKDGLRKGALLFFAISSFFEFLCVILYAFVFPKIPI 192 (396)
Q Consensus 128 ~~~a~~~G~g~aGi~~s~~~ii~~~~~~~~~~~~~~~a~~yF~ia~~~~~~~~~~~~~~l~k~~~ 192 (396)
.++....+.++++.+.+.+.. +...+ + .+. .++.++.+..+++++... .++..|+
T Consensus 156 a~Gi~~~~~gLGsaI~~~l~~---~l~~~---~--~~~-~fl~l~vl~~vv~ll~~~-~vr~p~~ 210 (591)
T PTZ00207 156 VVAIMKTFTGLGSAILGSIQL---AFFSD---N--TSA-YFFFLMSFALVVGILAIV-FMRLPPF 210 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHH---h--HHH-HHHHHHHHHHHHHHHHHh-heeCCcc
Confidence 344445666666654333222 22222 1 233 333455555566666665 5544443
No 181
>PRK03633 putative MFS family transporter protein; Provisional
Probab=67.95 E-value=18 Score=35.59 Aligned_cols=110 Identities=13% Similarity=0.016 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHhhhhhhhhccccccccCCcchHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHhhccccccceeeec
Q 016029 276 YAVVLIAMYNVGDLIGRYIPLLKFFKLESRKYITAATLSRFLLVPAFYFTAKYGDQGWMIMLTSFLGLSNGYLTVCVLTA 355 (396)
Q Consensus 276 ~~~~~~~~fn~gD~iGR~l~~~~~~~~~~~~~l~i~sl~R~~fiplfll~~~~~~d~~~~i~~~lfgltnGyl~t~~mi~ 355 (396)
..-.....+.++..+|......-. .+..+|+.... .=++.....+++...++-+...+..++.|+..|-........
T Consensus 42 ~~G~~~s~~~l~~~~~~~~~g~l~-dr~g~k~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~ 118 (381)
T PRK03633 42 QVGVVSSSYFTGNLVGTLLAGYVI-KRIGFNRSYYL--ASLIFAAGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESA 118 (381)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHH--HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667788888888887654421 11123333222 122223333344444454555556788888877543332222
Q ss_pred cCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHH
Q 016029 356 APKGYKGPEQNALGNLLVLFLLGGIFAGATLDW 388 (396)
Q Consensus 356 ~p~~v~~~e~e~ag~~~~~~l~~Gl~~Gs~~s~ 388 (396)
..+..++++|..+-.........|-.+|..++-
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 151 (381)
T PRK03633 119 LMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVS 151 (381)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 223445667777766666667777777776653
No 182
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=67.84 E-value=22 Score=36.54 Aligned_cols=107 Identities=10% Similarity=0.033 Sum_probs=54.6
Q ss_pred HHHHHHHHhhhhhhhhccccccc-cCCcchHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHhhccccccceeeeccC
Q 016029 279 VLIAMYNVGDLIGRYIPLLKFFK-LESRKYITAATLSRFLLVPAFYFTAKYGDQGWMIMLTSFLGLSNGYLTVCVLTAAP 357 (396)
Q Consensus 279 ~~~~~fn~gD~iGR~l~~~~~~~-~~~~~~l~i~sl~R~~fiplfll~~~~~~d~~~~i~~~lfgltnGyl~t~~mi~~p 357 (396)
..+..|.++-.+++...++..=+ ..++|.+.+..+.-.+-. ++....++.+...+...+.|+.+|...........
T Consensus 52 ~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~---~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a 128 (475)
T TIGR00924 52 IIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGH---FMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVG 128 (475)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHH---HHHHhcccHhHHHHHHHHHHhccccccCCHHHHHH
Confidence 44556666666666555432101 122333433333332222 11122233444555567788888876555443333
Q ss_pred CCCCch---hhhhhhhHHHHHHHHHHHHHHHHHH
Q 016029 358 KGYKGP---EQNALGNLLVLFLLGGIFAGATLDW 388 (396)
Q Consensus 358 ~~v~~~---e~e~ag~~~~~~l~~Gl~~Gs~~s~ 388 (396)
+..+++ +|+.+-.+.....++|..+|..++-
T Consensus 129 ~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g 162 (475)
T TIGR00924 129 KLYERGDMPRRDGGFTLFYMSINIGSFISPLLAG 162 (475)
T ss_pred HhcCCCCcccccceehhHHHHHHHHHHHHHHHHH
Confidence 333332 3666666777777778777766643
No 183
>PRK12307 putative sialic acid transporter; Provisional
Probab=67.24 E-value=16 Score=36.18 Aligned_cols=107 Identities=14% Similarity=0.012 Sum_probs=61.0
Q ss_pred HHHHHHHHHhhhhhhhhccccccccCCcchHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHhhccccccceeeeccC
Q 016029 278 VVLIAMYNVGDLIGRYIPLLKFFKLESRKYITAATLSRFLLVPAFYFTAKYGDQGWMIMLTSFLGLSNGYLTVCVLTAAP 357 (396)
Q Consensus 278 ~~~~~~fn~gD~iGR~l~~~~~~~~~~~~~l~i~sl~R~~fiplfll~~~~~~d~~~~i~~~lfgltnGyl~t~~mi~~p 357 (396)
-....++.++-.+|....+.-.=+. ++|...... -.+.....+++...++.+...+.-++.|+..|-..+....+..
T Consensus 56 ~~~~~~~~~~~~l~~~~~g~l~dr~-g~r~~l~~~--~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~ 132 (426)
T PRK12307 56 AFLATAAFIGRPFGGALFGLLADKF-GRKPLMMWS--IVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAV 132 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHH--HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3445566666666655443321122 344433222 2222222222333334445555677888887766666666667
Q ss_pred CCCCchhhhhhhhHHHHHHHHHHHHHHHHH
Q 016029 358 KGYKGPEQNALGNLLVLFLLGGIFAGATLD 387 (396)
Q Consensus 358 ~~v~~~e~e~ag~~~~~~l~~Gl~~Gs~~s 387 (396)
+..++|+|..+..+......+|..+|..+.
T Consensus 133 ~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~ 162 (426)
T PRK12307 133 ESWPKHLKSKASAFLVSGFGIGNIIAAYFM 162 (426)
T ss_pred HhCCHhHhhHhhhHHHHHHhHHHHHHHHHH
Confidence 777888888888877777777777776554
No 184
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=67.11 E-value=1.2e+02 Score=31.67 Aligned_cols=64 Identities=16% Similarity=0.151 Sum_probs=36.9
Q ss_pred ehhhhhhhhhhHhhchHHHHhhhcCCC--CCcceeehhhhHHHHHHHHHHHHhhccCC--cchhhHHH
Q 016029 6 LLGNGCLFSWNSMLTVVDYYVFLFPQY--HPSRILTLVYQPFALITLAILAYHEAKID--TRRRIIFG 69 (396)
Q Consensus 6 ~lGi~~LlpwN~~ita~~Yf~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~Ri~~~ 69 (396)
+.-.+.-++=|.+.+-.+++-..-.++ .-.+.+++.+....++..++...+.+|.. .+.|....
T Consensus 280 l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~ 347 (495)
T KOG2533|consen 280 LCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFI 347 (495)
T ss_pred HHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 334444455555555555554441111 12355777788888888888888888865 45554433
No 185
>PRK10133 L-fucose transporter; Provisional
Probab=66.93 E-value=22 Score=36.00 Aligned_cols=59 Identities=10% Similarity=-0.058 Sum_probs=38.1
Q ss_pred CchHHHHHHHHHhhccccccceeeeccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHH
Q 016029 330 DQGWMIMLTSFLGLSNGYLTVCVLTAAPKGYKGPEQNALGNLLVLFLLGGIFAGATLDW 388 (396)
Q Consensus 330 ~d~~~~i~~~lfgltnGyl~t~~mi~~p~~v~~~e~e~ag~~~~~~l~~Gl~~Gs~~s~ 388 (396)
+-+...+..++.|+..|...+....+..+..++++|+....+...+...|..+|..++-
T Consensus 116 ~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~ 174 (438)
T PRK10133 116 NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQ 174 (438)
T ss_pred CHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344456889999999887777666554434455554455566666677777776653
No 186
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=66.72 E-value=30 Score=36.85 Aligned_cols=77 Identities=9% Similarity=0.000 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHhhcccCCchHHHHHHHHHhhccccccceeeeccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHH
Q 016029 311 ATLSRFLLVPAFYFTAKYGDQGWMIMLTSFLGLSNGYLTVCVLTAAPKGYKGPEQNALGNLLVLFLLGGIFAGATLDW 388 (396)
Q Consensus 311 ~sl~R~~fiplfll~~~~~~d~~~~i~~~lfgltnGyl~t~~mi~~p~~v~~~e~e~ag~~~~~~l~~Gl~~Gs~~s~ 388 (396)
....-++-+.=.+.|..-++-..++.=+.+.|+..|........ .++.++.+.|.....+..+.....-.+|..++=
T Consensus 111 ~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~~~~~~-isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~ 187 (599)
T PF06609_consen 111 FIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQELAALA-ISELVPNKWRGLGLAIASIPFIITTWISPLIAQ 187 (599)
T ss_pred HHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHHHHHHHH-HHHhcccchhhhHhHHHHHHHHhhhcccHHHHH
Confidence 33444555555566665555556666678888866655533222 366677778876655555444333334444443
No 187
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=66.35 E-value=25 Score=36.12 Aligned_cols=83 Identities=16% Similarity=0.179 Sum_probs=55.8
Q ss_pred HHHHHHHHHHhhcccCCchHHHHHHHHHhhccccccceeeeccCCCC-CchhhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 016029 314 SRFLLVPAFYFTAKYGDQGWMIMLTSFLGLSNGYLTVCVLTAAPKGY-KGPEQNALGNLLVLFLLGGIFAGATLDWLWLI 392 (396)
Q Consensus 314 ~R~~fiplfll~~~~~~d~~~~i~~~lfgltnGyl~t~~mi~~p~~v-~~~e~e~ag~~~~~~l~~Gl~~Gs~~s~~~~~ 392 (396)
.-.++..-.++|..-++.+..++.-++.|+.+|-.....+..-++.. +++||..+-.+.......|..+|..++-.+.=
T Consensus 77 ~~~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~ 156 (495)
T PRK14995 77 GGTLFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLE 156 (495)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34455555566665556666666678889888766555544444544 56788888888888888888888887765544
Q ss_pred cCCC
Q 016029 393 GKGW 396 (396)
Q Consensus 393 ~~~~ 396 (396)
..||
T Consensus 157 ~~gw 160 (495)
T PRK14995 157 HFYW 160 (495)
T ss_pred cCCh
Confidence 3344
No 188
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=65.24 E-value=1.6e+02 Score=29.82 Aligned_cols=54 Identities=17% Similarity=0.263 Sum_probs=40.1
Q ss_pred HHHHHHHHhhcccCCchHHHHHHHHHhhccccccceeeeccCCCCCchhhhhhh
Q 016029 316 FLLVPAFYFTAKYGDQGWMIMLTSFLGLSNGYLTVCVLTAAPKGYKGPEQNALG 369 (396)
Q Consensus 316 ~~fiplfll~~~~~~d~~~~i~~~lfgltnGyl~t~~mi~~p~~v~~~e~e~ag 369 (396)
..-+|.+++-..-+.......-+.+.+++.--..|..+..-.+..++++|..+.
T Consensus 337 ~~~vP~~llls~~~~~~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~ 390 (451)
T KOG2615|consen 337 LLIVPAFLLLSLARTPVVLYLGSTLKSFSTASVVTCLTSLVHKYGPQSQRGTLN 390 (451)
T ss_pred HHHHHHHHHHhccccchhhhHHHHHHHHHHHHhhHHHHHHHHhcCCcccchHHH
Confidence 456788888766665555555678888888888888888877778887885543
No 189
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=65.13 E-value=49 Score=28.68 Aligned_cols=111 Identities=11% Similarity=0.063 Sum_probs=67.2
Q ss_pred hHHHHHHHHHHHhhhhhhhhccccccccCCcchHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHhhccccccceeee
Q 016029 275 WYAVVLIAMYNVGDLIGRYIPLLKFFKLESRKYITAATLSRFLLVPAFYFTAKYGDQGWMIMLTSFLGLSNGYLTVCVLT 354 (396)
Q Consensus 275 w~~~~~~~~fn~gD~iGR~l~~~~~~~~~~~~~l~i~sl~R~~fiplfll~~~~~~d~~~~i~~~lfgltnGyl~t~~mi 354 (396)
....++...|.++-+++-.+.+. -++|+..++ =.+..+++..++.+++.+..+.--++.|+.-+.+-+.-=.
T Consensus 41 ~slai~Y~~~~~s~l~~P~iv~~-----lg~K~sm~l---g~~~y~~y~~~~~~~~~~~l~~~s~l~G~~~a~lW~aqg~ 112 (156)
T PF05978_consen 41 YSLAILYGSFAISCLFAPSIVNK-----LGPKWSMIL---GSLGYAIYIASFFYPNSYTLYPASALLGFGAALLWTAQGT 112 (156)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHH-----HhhHHHHHH---HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHhhHhhhH
Confidence 44567777888888876554322 234543333 3345667888888787766666688888888766544322
Q ss_pred ccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 016029 355 AAPKGYKGPEQNALGNLLVLFLLGGIFAGATLDWLWLIG 393 (396)
Q Consensus 355 ~~p~~v~~~e~e~ag~~~~~~l~~Gl~~Gs~~s~~~~~~ 393 (396)
+-.+..++++|+.--.+-.-....++..|.++.++..-.
T Consensus 113 ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~~~ 151 (156)
T PF05978_consen 113 YLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIFQG 151 (156)
T ss_pred HHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 222333445555544444444556888888888776433
No 190
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=64.80 E-value=20 Score=35.58 Aligned_cols=54 Identities=9% Similarity=0.104 Sum_probs=43.7
Q ss_pred HHHHHHHhhccccccceeeeccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHH
Q 016029 335 IMLTSFLGLSNGYLTVCVLTAAPKGYKGPEQNALGNLLVLFLLGGIFAGATLDW 388 (396)
Q Consensus 335 ~i~~~lfgltnGyl~t~~mi~~p~~v~~~e~e~ag~~~~~~l~~Gl~~Gs~~s~ 388 (396)
.+.-++.|+..|......+..-|+.+++|||..+-.+++.....|..+|..++=
T Consensus 92 ~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG 145 (393)
T PRK11195 92 LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGG 145 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567899999888888888899999999999988888888877777766653
No 191
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=62.85 E-value=63 Score=33.40 Aligned_cols=108 Identities=19% Similarity=0.159 Sum_probs=72.8
Q ss_pred HHHHHHHHhhhhhhhhccccccccCCcchHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHhhccccccceeeeccCC
Q 016029 279 VLIAMYNVGDLIGRYIPLLKFFKLESRKYITAATLSRFLLVPAFYFTAKYGDQGWMIMLTSFLGLSNGYLTVCVLTAAPK 358 (396)
Q Consensus 279 ~~~~~fn~gD~iGR~l~~~~~~~~~~~~~l~i~sl~R~~fiplfll~~~~~~d~~~~i~~~lfgltnGyl~t~~mi~~p~ 358 (396)
.+...+++|-.+|....+... ..-.||..++.+. +.++--.+++..-++.++..+-=++.|+--|......=+|..+
T Consensus 93 ~~~s~~~lga~~g~l~~g~l~-d~~GRk~~l~~~~--~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sE 169 (513)
T KOG0254|consen 93 LLTSILNLGALVGSLLAGRLG-DRIGRKKTLLLAV--VLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISE 169 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHH--HHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhh
Confidence 557788888888887765421 1124554433332 3333333333333455555666888888888888777788777
Q ss_pred CCCchhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 016029 359 GYKGPEQNALGNLLVLFLLGGIFAGATLDWL 389 (396)
Q Consensus 359 ~v~~~e~e~ag~~~~~~l~~Gl~~Gs~~s~~ 389 (396)
..+++.|.....+..++.+.|+.+|-+.+..
T Consensus 170 iap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~ 200 (513)
T KOG0254|consen 170 IAPAHIRGTLVSLYQLFITIGILLGYCINYG 200 (513)
T ss_pred cCChhhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 7788899999999999999999999555543
No 192
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=62.70 E-value=11 Score=36.18 Aligned_cols=104 Identities=13% Similarity=0.025 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHhhhhhhhhccccccccCCcchHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHhhccccccceeeec
Q 016029 276 YAVVLIAMYNVGDLIGRYIPLLKFFKLESRKYITAATLSRFLLVPAFYFTAKYGDQGWMIMLTSFLGLSNGYLTVCVLTA 355 (396)
Q Consensus 276 ~~~~~~~~fn~gD~iGR~l~~~~~~~~~~~~~l~i~sl~R~~fiplfll~~~~~~d~~~~i~~~lfgltnGyl~t~~mi~ 355 (396)
..-.....+.++..+|+...+.-.=+. ++|..+.... ++.....+++...++.+...+..++.|+.+|-.....+..
T Consensus 39 ~~g~~~s~~~~~~~~~~~~~G~l~d~~-G~r~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 115 (377)
T TIGR00890 39 AVAIWFTLLLIGLAMSMPVGGLLADKF-GPRAVAMLGG--ILYGLGFTFYAIADSLAALYLTYGLASAGVGIAYGIALNT 115 (377)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHc-CccchhHHhH--HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHH
Confidence 344557788888888877655421122 3343332221 2222222333333444445555668888777544333333
Q ss_pred cCCCCCchhhhhhhhHHHHHHHHHHHHH
Q 016029 356 APKGYKGPEQNALGNLLVLFLLGGIFAG 383 (396)
Q Consensus 356 ~p~~v~~~e~e~ag~~~~~~l~~Gl~~G 383 (396)
..+.. +|+|..+..+......+|..++
T Consensus 116 ~~~~~-~~~~~~~~~~~~~~~~~g~~~~ 142 (377)
T TIGR00890 116 AVKWF-PDKRGLASGIIIGGYGLGSFIL 142 (377)
T ss_pred HHHHc-CcccHHHHHHHHHhcchhHhHH
Confidence 33322 3567777777666666665443
No 193
>PRK09952 shikimate transporter; Provisional
Probab=62.69 E-value=1.7e+02 Score=29.30 Aligned_cols=76 Identities=14% Similarity=0.117 Sum_probs=35.1
Q ss_pred HHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHHHHHhhhhhhhccchhhcccc-CC
Q 016029 47 LITLAILAYHEAKIDTRRRIIFGYILFFASSLLVLVLDLATSGKGGLGTFIGICVISGAFGVADANVQGGMVGDLSF-MT 125 (396)
Q Consensus 47 l~~~~~~~~~~~~~~~~~Ri~~~~~~~~i~~~~~~~i~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la~~-~p 125 (396)
.+...+..++.+|+..+.-+..+.++..+..+.+. ..... . ...+..+...++.+++.+...+...++.+. +|
T Consensus 300 ~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~-~~~~~--~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p 373 (438)
T PRK09952 300 CLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFF-MALEA--Q---SIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFG 373 (438)
T ss_pred HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHH-HHHHc--C---ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 33444556777887765444444443333222111 11111 0 112222333344566666666666666444 77
Q ss_pred HHH
Q 016029 126 SEL 128 (396)
Q Consensus 126 ~~~ 128 (396)
.++
T Consensus 374 ~~~ 376 (438)
T PRK09952 374 ASY 376 (438)
T ss_pred cch
Confidence 765
No 194
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=61.30 E-value=2e+02 Score=29.61 Aligned_cols=69 Identities=10% Similarity=0.065 Sum_probs=37.7
Q ss_pred CcchhhHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHHHHHhhhhhhhccchhhcc-ccCCHHHH
Q 016029 61 DTRRRIIFGYILFFASSLLVLVLDLATSGKGGLGTFIGICVISGAFGVADANVQGGMVGDL-SFMTSELI 129 (396)
Q Consensus 61 ~~~~Ri~~~~~~~~i~~~~~~~i~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la-~~~p~~~~ 129 (396)
+...|+..|+++..+.++.............+....+.....-++.|++-++.....++.+ +.-|+++.
T Consensus 344 ~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~ 413 (489)
T PRK10207 344 SMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLM 413 (489)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHH
Confidence 3344788888776655543321111000111122233344556678888888888888886 44576653
No 195
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=60.96 E-value=33 Score=35.64 Aligned_cols=110 Identities=13% Similarity=0.020 Sum_probs=74.1
Q ss_pred HHHHHHHHHhhhhhhhhccccccccCCcchHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHhhccccccceeeeccC
Q 016029 278 VVLIAMYNVGDLIGRYIPLLKFFKLESRKYITAATLSRFLLVPAFYFTAKYGDQGWMIMLTSFLGLSNGYLTVCVLTAAP 357 (396)
Q Consensus 278 ~~~~~~fn~gD~iGR~l~~~~~~~~~~~~~l~i~sl~R~~fiplfll~~~~~~d~~~~i~~~lfgltnGyl~t~~mi~~p 357 (396)
...+..|-++-..|-.++... ..++.+.+..++-.++--+..+. ++...+.+.-+++|+..|-.. ...-+--
T Consensus 69 s~F~ysYal~qIp~GlLaDrl----G~K~vL~l~~l~Wsl~t~L~~fa---~Sl~~L~i~R~llGvaEA~~~-A~~syI~ 140 (511)
T TIGR00806 69 PVLPYSHLAVLVPVFLLTDYL----RYKPVLVLQALSFVCVWLLLLLG---TSVWHMQLMEVFYSVTMAARI-AYSSYIF 140 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHh----CchHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 344556666666666666542 12344444444444443333332 245666778999999997776 5556667
Q ss_pred CCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 016029 358 KGYKGPEQNALGNLLVLFLLGGIFAGATLDWLWLIGKGW 396 (396)
Q Consensus 358 ~~v~~~e~e~ag~~~~~~l~~Gl~~Gs~~s~~~~~~~~~ 396 (396)
+.++++||..+..+..-+..+|-++|+.++=. +..-||
T Consensus 141 ~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gW 178 (511)
T TIGR00806 141 SLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGW 178 (511)
T ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCc
Confidence 78899999999999999999999999998877 555566
No 196
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=60.93 E-value=1.8e+02 Score=30.05 Aligned_cols=144 Identities=11% Similarity=0.038 Sum_probs=77.4
Q ss_pred hhhhHHHHHHHHHHHHhhccCCcchhh-HHHHHHHHHHHHHHHHhhhccCC--C---------CCchHHHHHHHHHHHHh
Q 016029 40 LVYQPFALITLAILAYHEAKIDTRRRI-IFGYILFFASSLLVLVLDLATSG--K---------GGLGTFIGICVISGAFG 107 (396)
Q Consensus 40 ~~~~~~~l~~~~~~~~~~~~~~~~~Ri-~~~~~~~~i~~~~~~~i~~~~~~--~---------~~~~~f~~~l~~~~~~g 107 (396)
..+.+.+.+..++..++.+|...++|. ..++++..++++.+..+....+. . +....-+..++...+.|
T Consensus 312 ~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G 391 (477)
T TIGR01301 312 MLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILG 391 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhh
Confidence 345555566667778888888766666 46666776666665544321100 0 01111255667777899
Q ss_pred hhhhhhccchhhccccCCH---H----HHHHHHhhhhhHhHHHHHHHHHHHhhccCCccccchhhhHHhHHHHHHHHH-H
Q 016029 108 VADANVQGGMVGDLSFMTS---E----LIQSFLAGLAASGAITSALRLITKAAFENSKDGLRKGALLFFAISSFFEFL-C 179 (396)
Q Consensus 108 ~~~~~~q~s~~~la~~~p~---~----~~~a~~~G~g~aGi~~s~~~ii~~~~~~~~~~~~~~~a~~yF~ia~~~~~~-~ 179 (396)
++-+...+-=|++.+..-+ + |++.+-+-.-+.-+++++..-......+++ ....+.++.+..++ +
T Consensus 392 i~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~-------~~~~~~~~gv~~~~aa 464 (477)
T TIGR01301 392 IPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGG-------NLPAFVVGAVAAFVSG 464 (477)
T ss_pred HHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCC-------CeeHHHHHHHHHHHHH
Confidence 9999999999999766433 1 333333333333333333222222223321 12234555555554 5
Q ss_pred HHHHHHHcCCCh
Q 016029 180 VILYAFVFPKIP 191 (396)
Q Consensus 180 ~~~~~~~l~k~~ 191 (396)
+.+.+ .++|.+
T Consensus 465 ~~~~~-~~~~~~ 475 (477)
T TIGR01301 465 LLALI-LLPRPR 475 (477)
T ss_pred HHHHH-hCCCCC
Confidence 55555 777753
No 197
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=60.86 E-value=39 Score=35.53 Aligned_cols=154 Identities=14% Similarity=0.139 Sum_probs=82.1
Q ss_pred eehhhhhhhhhhHhhchHHHHhhhcCCCCCcceeehh---hhHHHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHH
Q 016029 5 WLLGNGCLFSWNSMLTVVDYYVFLFPQYHPSRILTLV---YQPFALITLAILAYHEAKIDTRRRIIFGYILFFASSLLVL 81 (396)
Q Consensus 5 ~~lGi~~LlpwN~~ita~~Yf~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~i~~~~~~ 81 (396)
++.|.|..+-||+. ||.-+=-+ ..+-.+.++ .-...+..-.+-.++.+|+.+..-+..++.++.+=.+.+-
T Consensus 381 v~mG~g~~lv~tFL-----fWHled~~-~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S 454 (618)
T KOG3762|consen 381 VVMGAGVGLVFTFL-----FWHLEDLG-GIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYS 454 (618)
T ss_pred HHHHHHHHHHHHHH-----HHHHhhcC-CcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHH
Confidence 46899999999998 88754222 111122211 1111222222333566777665555566666655544332
Q ss_pred HhhhccCCCCCchHHHHHHHHHHHHhhhhhhhccchhhcccc-CCHHH---HHHHH------hhhhhHhHHHHHHHHHHH
Q 016029 82 VLDLATSGKGGLGTFIGICVISGAFGVADANVQGGMVGDLSF-MTSEL---IQSFL------AGLAASGAITSALRLITK 151 (396)
Q Consensus 82 ~i~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la~~-~p~~~---~~a~~------~G~g~aGi~~s~~~ii~~ 151 (396)
.++ .-|.++.+=.+-|+..+..=..+.+.++. .||+. .|+++ .|-|++.+++-.+ .
T Consensus 455 ~L~----------n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~----v 520 (618)
T KOG3762|consen 455 YLQ----------NPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFV----V 520 (618)
T ss_pred Hhc----------CchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhh----h
Confidence 221 14567777778888888888888888655 46554 34443 2334443333111 1
Q ss_pred hhccCCccccchhhhHHhHHHHHHHHHHHHHHH
Q 016029 152 AAFENSKDGLRKGALLFFAISSFFEFLCVILYA 184 (396)
Q Consensus 152 ~~~~~~~~~~~~~a~~yF~ia~~~~~~~~~~~~ 184 (396)
-.+ +. ..++-+|++++++..+..+++.
T Consensus 521 ~~f-----g~-~ttf~~~giAcl~~l~~~~~iq 547 (618)
T KOG3762|consen 521 ERF-----GA-RTTFRIFGIACLVTLALFISIQ 547 (618)
T ss_pred eee-----hh-HHHHHHHHHHHHHHHHHHHHhh
Confidence 111 11 2445567777776665555554
No 198
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=58.37 E-value=1.9e+02 Score=28.89 Aligned_cols=98 Identities=4% Similarity=-0.038 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHHHHHhhhhhhhccchhhc-cc
Q 016029 44 PFALITLAILAYHEAKIDTRRRIIFGYILFFASSLLVLVLDLATSGKGGLGTFIGICVISGAFGVADANVQGGMVGD-LS 122 (396)
Q Consensus 44 ~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~i~~~~~~~i~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~l-a~ 122 (396)
.......+...++.+|++.+.-+..+.++..+...+.. ... .. ...++...+..++.|++.+........+ +-
T Consensus 262 i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~---~~~-~~--~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~ 335 (418)
T TIGR00889 262 FSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFA---YGD-PE--YFGYALLFLSMIVYGCAFDFFNISGSVFVEK 335 (418)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHH---HcC-cc--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555666778888776666666666555443332 111 11 1123334455667777777777666666 44
Q ss_pred cCCHHHH---HHHH--hhhhhHhHHHHHHH
Q 016029 123 FMTSELI---QSFL--AGLAASGAITSALR 147 (396)
Q Consensus 123 ~~p~~~~---~a~~--~G~g~aGi~~s~~~ 147 (396)
.+|++.. +++. ..+++++.++..+.
T Consensus 336 ~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~ 365 (418)
T TIGR00889 336 EVPVHIRASAQGLFTLMCNGFGSLLGYILS 365 (418)
T ss_pred HCCHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 5786633 2222 34566666665555
No 199
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=58.05 E-value=1 Score=45.33 Aligned_cols=113 Identities=15% Similarity=0.147 Sum_probs=76.0
Q ss_pred hHHHHHHHHHHHhhhhhhhhccccccccCCcchHHHHHHHHHHHHHHHHhhcccC---CchHHHHHHHHHhhccccccce
Q 016029 275 WYAVVLIAMYNVGDLIGRYIPLLKFFKLESRKYITAATLSRFLLVPAFYFTAKYG---DQGWMIMLTSFLGLSNGYLTVC 351 (396)
Q Consensus 275 w~~~~~~~~fn~gD~iGR~l~~~~~~~~~~~~~l~i~sl~R~~fiplfll~~~~~---~d~~~~i~~~lfgltnGyl~t~ 351 (396)
+..-.....+.+|-.+|-.+.+... .+..||..+..+. ++.+.--+++..-+ +.+...+.-++.|+..|-....
T Consensus 46 ~~~~~~~~~~~~g~~~G~~~~g~~~-d~~GRk~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~ 122 (451)
T PF00083_consen 46 LLSSLLTSSFFIGAIVGALIFGFLA-DRYGRKPALIISA--LLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVV 122 (451)
T ss_pred HHHHHHHHHHHhhhccccccccccc-ccccccccccccc--ccccccccccccccccccccccccccccccccccccccc
Confidence 3344557788888888888776532 1224554332222 11111112222223 4455555689999999999999
Q ss_pred eeeccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 016029 352 VLTAAPKGYKGPEQNALGNLLVLFLLGGIFAGATLDWLW 390 (396)
Q Consensus 352 ~mi~~p~~v~~~e~e~ag~~~~~~l~~Gl~~Gs~~s~~~ 390 (396)
..++..+..+++.|...+.+...+..+|..+|+.++..+
T Consensus 123 ~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~ 161 (451)
T PF00083_consen 123 SPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIV 161 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999999999999998887654
No 200
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=57.33 E-value=2.1e+02 Score=28.62 Aligned_cols=40 Identities=10% Similarity=-0.003 Sum_probs=25.8
Q ss_pred hhHHHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHH
Q 016029 42 YQPFALITLAILAYHEAKIDTRRRIIFGYILFFASSLLVL 81 (396)
Q Consensus 42 ~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~i~~~~~~ 81 (396)
....+++..++..++.+|++.+.-+..+..++.+.++.+.
T Consensus 315 ~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~ 354 (479)
T PRK10077 315 VGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLG 354 (479)
T ss_pred HHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHH
Confidence 4445556666666777888776666667776666655543
No 201
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=57.10 E-value=37 Score=32.72 Aligned_cols=35 Identities=9% Similarity=0.080 Sum_probs=17.9
Q ss_pred CCCCCchhhhhh--hhHHHHHHHHHHHHHHHHHHHHH
Q 016029 357 PKGYKGPEQNAL--GNLLVLFLLGGIFAGATLDWLWL 391 (396)
Q Consensus 357 p~~v~~~e~e~a--g~~~~~~l~~Gl~~Gs~~s~~~~ 391 (396)
++..++++|+.+ ...+....++|..+|..++-.+.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~ 149 (375)
T TIGR00899 113 REHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLA 149 (375)
T ss_pred HHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHH
Confidence 333344444432 34444455667777776655443
No 202
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=55.26 E-value=46 Score=32.83 Aligned_cols=66 Identities=14% Similarity=0.249 Sum_probs=47.9
Q ss_pred CchHHHHHHHHHhhccccccceeeeccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 016029 330 DQGWMIMLTSFLGLSNGYLTVCVLTAAPKGYKGPEQNALGNLLVLFLLGGIFAGATLDWLWLIGKGW 396 (396)
Q Consensus 330 ~d~~~~i~~~lfgltnGyl~t~~mi~~p~~v~~~e~e~ag~~~~~~l~~Gl~~Gs~~s~~~~~~~~~ 396 (396)
+-++..+.-++.|+..|.. ........+..+++||..+-.+......+|..+|..++..+.-.-||
T Consensus 78 ~~~~l~~~R~l~G~g~~~~-~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gW 143 (368)
T TIGR00903 78 NYEWLLACQLLAALGQPFL-LNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGL 143 (368)
T ss_pred cHHHHHHHHHHHHhHhHHH-HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccch
Confidence 4455556688889988743 22333335667788999999999999999999998888776655555
No 203
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=55.02 E-value=88 Score=29.37 Aligned_cols=125 Identities=10% Similarity=0.051 Sum_probs=68.1
Q ss_pred HHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHHHHHhhhhhhhccch-hhccccCCHHHH
Q 016029 51 AILAYHEAKIDTRRRIIFGYILFFASSLLVLVLDLATSGKGGLGTFIGICVISGAFGVADANVQGGM-VGDLSFMTSELI 129 (396)
Q Consensus 51 ~~~~~~~~~~~~~~Ri~~~~~~~~i~~~~~~~i~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~-~~la~~~p~~~~ 129 (396)
+....+.++.+.+.-+..|.+..++.-..+-. .... .. ....+|...+...+.|.+++..+.+. ..-...||++-=
T Consensus 54 ~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l-~~~~-~i-~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~~RG 130 (250)
T PF06813_consen 54 ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWL-AVSG-RI-PSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPRSRG 130 (250)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH-HHhC-cc-CccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCccccC
Confidence 33345567777666555565555444333221 1211 11 12346666666667777777665554 445678886432
Q ss_pred HHHHhhhhhHhHHHHHHHHHHHhhccCCccccchhhhHHhHHHHHHHHHHHHHHH
Q 016029 130 QSFLAGLAASGAITSALRLITKAAFENSKDGLRKGALLFFAISSFFEFLCVILYA 184 (396)
Q Consensus 130 ~a~~~G~g~aGi~~s~~~ii~~~~~~~~~~~~~~~a~~yF~ia~~~~~~~~~~~~ 184 (396)
.++-.=.|.-|+-+++...+..+.+++| .+.++ ..++....++|+..-.
T Consensus 131 ~vvgilk~~~GLSaai~t~i~~~~f~~~-----~~~fl-l~la~~~~~v~l~~~~ 179 (250)
T PF06813_consen 131 TVVGILKGFFGLSAAIFTQIYSAFFGDD-----PSSFL-LFLAVLPAVVCLVAMF 179 (250)
T ss_pred ceehhhhHHHHhHHHHHHHHHHHHcCCC-----hHHHH-HHHHHHHHHHHHHHhh
Confidence 2222334566777788888888887653 23343 3455555555655543
No 204
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=54.28 E-value=20 Score=37.54 Aligned_cols=80 Identities=16% Similarity=0.174 Sum_probs=55.5
Q ss_pred CcchHHHHHHHHHHHHHHHHhhccc--CCchHHHHHHHHHhhccccccceeeeccCCCCCchhhhhhhhHHHHHHHHHHH
Q 016029 304 SRKYITAATLSRFLLVPAFYFTAKY--GDQGWMIMLTSFLGLSNGYLTVCVLTAAPKGYKGPEQNALGNLLVLFLLGGIF 381 (396)
Q Consensus 304 ~~~~l~i~sl~R~~fiplfll~~~~--~~d~~~~i~~~lfgltnGyl~t~~mi~~p~~v~~~e~e~ag~~~~~~l~~Gl~ 381 (396)
++|.+...-+.|.+..-.+.+.... .+.|..+++.++.|..+.+....-...-|+.|++||-..|-.+.+...+..-.
T Consensus 74 rrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~ 153 (524)
T PF05977_consen 74 RRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARI 153 (524)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHh
Confidence 4566666667786654444443332 34556666789999988888887788889999998877777777776665555
Q ss_pred HH
Q 016029 382 AG 383 (396)
Q Consensus 382 ~G 383 (396)
+|
T Consensus 154 iG 155 (524)
T PF05977_consen 154 IG 155 (524)
T ss_pred cc
Confidence 54
No 205
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=52.98 E-value=27 Score=35.14 Aligned_cols=137 Identities=18% Similarity=0.161 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHhhhhccccCceEeeccCCCCCCchHHHHHHHHHHHhhhhhhhhccccccccCCcchHHHHHHHHHHH
Q 016029 239 LQNIDYAIDMFVIYTLTLSIFPGFLSEDTGSHSLGGWYAVVLIAMYNVGDLIGRYIPLLKFFKLESRKYITAATLSRFLL 318 (396)
Q Consensus 239 k~i~~~~~~~~l~f~vTl~vFP~i~~~~~~~~~~~~w~~~~~~~~fn~gD~iGR~l~~~~~~~~~~~~~l~i~sl~R~~f 318 (396)
+.++..+++.|..=..++..= |+..++-++-..+.=..=.++..|.++-.+|--+-....=+. +||.++...+
T Consensus 13 ~~l~aLa~~~F~igttEfv~~-gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~-~Rr~lLl~~l----- 85 (394)
T COG2814 13 LALLALALAAFAIGTTEFVPV-GLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRL-ERRRLLLGLL----- 85 (394)
T ss_pred HHHHHHHHHHHHHHhHHHHHH-hchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccc-chHHHHHHHH-----
Confidence 456666666665444444322 222222111111110112346678888887775543321123 5565543322
Q ss_pred HHHHHhhcc----cCCchHHHHHHHHHhhccccccceeeeccCCCCCchhhhhhhhHHHHHHHHHHHHH
Q 016029 319 VPAFYFTAK----YGDQGWMIMLTSFLGLSNGYLTVCVLTAAPKGYKGPEQNALGNLLVLFLLGGIFAG 383 (396)
Q Consensus 319 iplfll~~~----~~~d~~~~i~~~lfgltnGyl~t~~mi~~p~~v~~~e~e~ag~~~~~~l~~Gl~~G 383 (396)
-+|..+|. -+|-+...+-=++.|+++|-+-+.+...+.+.++|++|..|-.++...+++...+|
T Consensus 86 -~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~G 153 (394)
T COG2814 86 -ALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLG 153 (394)
T ss_pred -HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHh
Confidence 45555553 34555555568999999999999999999999999998888776655554444333
No 206
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=51.71 E-value=1.2e+02 Score=30.76 Aligned_cols=72 Identities=14% Similarity=0.144 Sum_probs=41.7
Q ss_pred HhhccCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHHHHHhhhhhhhccchhhccccCCHHHH
Q 016029 55 YHEAKIDTRRRIIFGYILFFASSLLVLVLDLATSGKGGLGTFIGICVISGAFGVADANVQGGMVGDLSFMTSELI 129 (396)
Q Consensus 55 ~~~~~~~~~~Ri~~~~~~~~i~~~~~~~i~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la~~~p~~~~ 129 (396)
.+.+|+.-.+-....++++++++.++..-... .+. ...++.........+++.|+-++++|.+....=++.+
T Consensus 276 ~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~-~~~--~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~~~ 347 (417)
T COG2223 276 WLSDRIGGRRVTLAVFVGMALAAALLSLFLTG-FGH--GGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPKET 347 (417)
T ss_pred hhhhhccchhHHHHHHHHHHHHHHHHHccccc-ccc--CcchHHHHHHHHHHHHHhccCcchheeechHHHHhhh
Confidence 45667665555555666666666554322211 111 1224445555556778888889999999766544433
No 207
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=50.79 E-value=2e+02 Score=29.42 Aligned_cols=96 Identities=13% Similarity=0.098 Sum_probs=60.0
Q ss_pred hhHHHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHHHHHhhhhhhhccchhhcc
Q 016029 42 YQPFALITLAILAYHEAKIDTRRRIIFGYILFFASSLLVLVLDLATSGKGGLGTFIGICVISGAFGVADANVQGGMVGDL 121 (396)
Q Consensus 42 ~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~i~~~~~~~i~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la 121 (396)
|....+.+.++.-+..+|..-..|-..+++.++..++.+...-..+ ...+++..++.+++|+.---=| -+.|++
T Consensus 297 fE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~~-----~~~~~l~~~~l~~iGf~IyGPq-mLiGl~ 370 (448)
T COG2271 297 FEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLAP-----NGSYLLDAILLFIIGFLIYGPQ-MLIGLA 370 (448)
T ss_pred HHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcCC-----CccHHHHHHHHHHHHHHHhhHH-HHHHHH
Confidence 6677778888888999999989998888887776665544332322 1236666666677776655455 666774
Q ss_pred -ccCCHHHHHHHHhhhhhHhHHHHH
Q 016029 122 -SFMTSELIQSFLAGLAASGAITSA 145 (396)
Q Consensus 122 -~~~p~~~~~a~~~G~g~aGi~~s~ 145 (396)
..+.|| +|.-+-+|+-|+.+-+
T Consensus 371 a~e~~pK--~AaGtA~Gf~Glf~Yl 393 (448)
T COG2271 371 AAEFVPK--KAAGTATGFVGLFAYL 393 (448)
T ss_pred HhccccH--hhccchhchhhhHHHH
Confidence 345555 2333444455554443
No 208
>PRK11010 ampG muropeptide transporter; Validated
Probab=49.87 E-value=37 Score=34.95 Aligned_cols=60 Identities=12% Similarity=0.109 Sum_probs=40.5
Q ss_pred hHHHHHHHHHhhccccccceeeeccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 016029 332 GWMIMLTSFLGLSNGYLTVCVLTAAPKGYKGPEQNALGNLLVLFLLGGIFAGATLDWLWL 391 (396)
Q Consensus 332 ~~~~i~~~lfgltnGyl~t~~mi~~p~~v~~~e~e~ag~~~~~~l~~Gl~~Gs~~s~~~~ 391 (396)
++..+..++.++-.+-.....-.+.++..++|||..+..+......+|..+|+.++..+.
T Consensus 108 ~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~ 167 (491)
T PRK11010 108 RWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLA 167 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555665444343344455667788889999999999888889888887665543
No 209
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=49.25 E-value=3e+02 Score=27.87 Aligned_cols=41 Identities=15% Similarity=-0.035 Sum_probs=22.3
Q ss_pred hhhhhhccchhhccccCCHH---HHHHHHhhhhhHhHHHHHHHH
Q 016029 108 VADANVQGGMVGDLSFMTSE---LIQSFLAGLAASGAITSALRL 148 (396)
Q Consensus 108 ~~~~~~q~s~~~la~~~p~~---~~~a~~~G~g~aGi~~s~~~i 148 (396)
.++=..++-+.-.+-.-|++ ..+.++.-..+++++++.+.-
T Consensus 102 ~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G 145 (433)
T PF03092_consen 102 FADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSG 145 (433)
T ss_pred HHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33344444444445455554 333445667777777776653
No 210
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=47.17 E-value=72 Score=31.49 Aligned_cols=105 Identities=15% Similarity=0.097 Sum_probs=56.4
Q ss_pred HHHHHHHhhhhhhhhccccccccCCcchHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHhhccccccceeeeccCCC
Q 016029 280 LIAMYNVGDLIGRYIPLLKFFKLESRKYITAATLSRFLLVPAFYFTAKYGDQGWMIMLTSFLGLSNGYLTVCVLTAAPKG 359 (396)
Q Consensus 280 ~~~~fn~gD~iGR~l~~~~~~~~~~~~~l~i~sl~R~~fiplfll~~~~~~d~~~~i~~~lfgltnGyl~t~~mi~~p~~ 359 (396)
....|.++=.++-....... .+.++|.+..... .++..-.++|..-++.+...+.-++.|+..|-.........++.
T Consensus 49 ~~s~~~~~~~l~~~~~g~l~-dr~G~r~~l~~~~--~l~~~~~~~~~~a~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~ 125 (393)
T PRK09705 49 LTALPVVTMGGLALAGSWLH-QHVSERRSVAISL--LLIAVGALMRELYPQSALLLSSALLGGVGIGIIQAVMPSVIKRR 125 (393)
T ss_pred HHHHHHHHHHHHhhhhHHHH-HHhCchHHHHHHH--HHHHHHHHHHHHCcchHHHHHHHHHHHhHHHHHhhhhhHHHHHH
Confidence 34455555445443332211 1124455443333 33444444455444545555567888888886555444444444
Q ss_pred CCchhhhhhhhHHHHHHHHHHHHHHHHHH
Q 016029 360 YKGPEQNALGNLLVLFLLGGIFAGATLDW 388 (396)
Q Consensus 360 v~~~e~e~ag~~~~~~l~~Gl~~Gs~~s~ 388 (396)
- +++|..+..+.......|..+|..++=
T Consensus 126 ~-~~~~~~~~g~~~~~~~~g~~~g~~~~~ 153 (393)
T PRK09705 126 F-QQRTPLVMGLWSAALMGGGGLGAAITP 153 (393)
T ss_pred c-cccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 4 366777767766667777777777653
No 211
>PRK11404 putative PTS system transporter subunits IIBC; Provisional
Probab=45.28 E-value=62 Score=33.54 Aligned_cols=46 Identities=11% Similarity=0.083 Sum_probs=36.4
Q ss_pred HHHhhhhhhhccch-hhccccCCHHHHHHHHhhhhhHhHHHHHHHHHHHh
Q 016029 104 GAFGVADANVQGGM-VGDLSFMTSELIQSFLAGLAASGAITSALRLITKA 152 (396)
Q Consensus 104 ~~~g~~~~~~q~s~-~~la~~~p~~~~~a~~~G~g~aGi~~s~~~ii~~~ 152 (396)
.+.|++ |+.|+.+ ||..-.+ +..-+.++|.+++|.++.+..+-..+
T Consensus 379 ~i~gl~-GITEpAIPfgv~~p~--~~i~a~~iG~avgGa~~~~~gv~~~a 425 (482)
T PRK11404 379 IVVGAT-VATEPAIPYALAAPL--PMITANTLAGGITGVLVIAFGIKRLA 425 (482)
T ss_pred HHHHHH-hcCcchhHHHHcCch--HHHHHHHHHHHHHHHHHHHhCCcccc
Confidence 445554 8999999 9887766 68888899999999999888865543
No 212
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=44.96 E-value=53 Score=35.26 Aligned_cols=55 Identities=11% Similarity=-0.048 Sum_probs=45.4
Q ss_pred HHHHHHhhccccccceeeeccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 016029 336 MLTSFLGLSNGYLTVCVLTAAPKGYKGPEQNALGNLLVLFLLGGIFAGATLDWLW 390 (396)
Q Consensus 336 i~~~lfgltnGyl~t~~mi~~p~~v~~~e~e~ag~~~~~~l~~Gl~~Gs~~s~~~ 390 (396)
+..++.|+..|-..++...+..+.+++++|..+-.++.....+|-.+|-+++-.+
T Consensus 177 ~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l 231 (633)
T TIGR00805 177 VSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFC 231 (633)
T ss_pred HHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 4588999998888888888888888899999998888888888888887665443
No 213
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.32 E-value=3.8e+02 Score=27.68 Aligned_cols=86 Identities=15% Similarity=0.093 Sum_probs=49.4
Q ss_pred HHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHHHHHhhhhhhhccchhhccccCCHHH
Q 016029 49 TLAILAYHEAKIDTRRRIIFGYILFFASSLLVLVLDLATSGKGGLGTFIGICVISGAFGVADANVQGGMVGDLSFMTSEL 128 (396)
Q Consensus 49 ~~~~~~~~~~~~~~~~Ri~~~~~~~~i~~~~~~~i~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la~~~p~~~ 128 (396)
..++.+.+.++++.|.-++.+..........+...+ . +.....-++.|+|.|++-.+-=+..+.-+.+.
T Consensus 66 ~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~N--------~---y~~yfssallG~Gaallw~GqG~ylt~~st~~ 134 (461)
T KOG3098|consen 66 SCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFPN--------S---YYLYFSSALLGFGAALLWTGQGGYLTSNSTRE 134 (461)
T ss_pred HHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhcc--------h---HHHHHHHHHhhhhHHheecccceehhhcCChh
Confidence 345555667777887777766665544433332111 1 12445667889999986555555544444332
Q ss_pred ----HHHHHhhhhhHhHHHHH
Q 016029 129 ----IQSFLAGLAASGAITSA 145 (396)
Q Consensus 129 ----~~a~~~G~g~aGi~~s~ 145 (396)
..+.+.+-+-++.+.--
T Consensus 135 tie~Nisi~Wai~~~~li~Gg 155 (461)
T KOG3098|consen 135 TIERNISIFWAIGQSSLIIGG 155 (461)
T ss_pred hHHHHHHHHHHHHHHHHHhhh
Confidence 35667777766666543
No 214
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=44.29 E-value=52 Score=33.71 Aligned_cols=104 Identities=14% Similarity=-0.071 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHHHHHhhhhhhhccchhhcccc
Q 016029 44 PFALITLAILAYHEAKIDTRRRIIFGYILFFASSLLVLVLDLATSGKGGLGTFIGICVISGAFGVADANVQGGMVGDLSF 123 (396)
Q Consensus 44 ~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~i~~~~~~~i~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la~~ 123 (396)
+..+++..+..++.+|.+.+.-+..+.++..+.....+.+....+-..+....+..+...++.+++.++.......++..
T Consensus 299 v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~ 378 (468)
T TIGR00788 299 LGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFMPFLVLLAR 378 (468)
T ss_pred HHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHHHHHHHHHccHHHHHHH
Confidence 44444555555666777755444444444443332211110000000000001122333445566666666666666544
Q ss_pred C-CHHH----HHHHHhhhhhHhHHHHHHH
Q 016029 124 M-TSEL----IQSFLAGLAASGAITSALR 147 (396)
Q Consensus 124 ~-p~~~----~~a~~~G~g~aGi~~s~~~ 147 (396)
. |+++ ....++=+++++.+++.+.
T Consensus 379 ~~p~~~egt~~al~~s~~~lg~~v~~~~g 407 (468)
T TIGR00788 379 LCPSGCESSVFALLASILHLGSSVSGFLG 407 (468)
T ss_pred hCCCCceehHHHHHHHHHHHHHHHHHHHH
Confidence 3 4333 1222233445555554433
No 215
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=44.26 E-value=1e+02 Score=32.19 Aligned_cols=95 Identities=21% Similarity=0.208 Sum_probs=50.0
Q ss_pred hhHHHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHHHHHhhhhhhhccchh-hc
Q 016029 42 YQPFALITLAILAYHEAKIDTRRRIIFGYILFFASSLLVLVLDLATSGKGGLGTFIGICVISGAFGVADANVQGGMV-GD 120 (396)
Q Consensus 42 ~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~i~~~~~~~i~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~-~l 120 (396)
....+.++.++...+..+.+.+.+....+.+....+.. ..++..+ .|+..+..+++.|.+.|...+-.. -+
T Consensus 342 igi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~-~~~p~~~-------~~~~l~~~~~~fG~~~g~~~~l~~~i~ 413 (509)
T KOG2504|consen 342 IGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLAR-LFLPFAT-------TYVGLIVFSILFGFCVGSFSSLTPVIL 413 (509)
T ss_pred HHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHH-HHHHHhc-------cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566677777778888877777776655554433332 2334332 155555666666766655544332 11
Q ss_pred cccCC-HHHHHH---HHhhhhhHhHHHH
Q 016029 121 LSFMT-SELIQS---FLAGLAASGAITS 144 (396)
Q Consensus 121 a~~~p-~~~~~a---~~~G~g~aGi~~s 144 (396)
....+ +++.+| .+..+|++.+++-
T Consensus 414 ~~~~g~~~l~~a~Gl~l~~~gi~~l~gp 441 (509)
T KOG2504|consen 414 VDLVGLEKLSNAYGLLLLFQGIGALVGP 441 (509)
T ss_pred HHHcChhhcchHHHHHHHHhHHHHHcCc
Confidence 22222 334433 3455555554443
No 216
>PRK10478 putative PTS system fructose-like transporter subunit EIIC; Provisional
Probab=44.07 E-value=33 Score=34.02 Aligned_cols=47 Identities=13% Similarity=0.208 Sum_probs=36.5
Q ss_pred HHHHhhhhhhhccch-hhccccCCHHHHHHHHhhhhhHhHHHHHHHHHHHh
Q 016029 103 SGAFGVADANVQGGM-VGDLSFMTSELIQSFLAGLAASGAITSALRLITKA 152 (396)
Q Consensus 103 ~~~~g~~~~~~q~s~-~~la~~~p~~~~~a~~~G~g~aGi~~s~~~ii~~~ 152 (396)
..+.|.+ ++.|+.+ ||..-.+ |-.-+.+.|.+++|.++.+..+-..+
T Consensus 252 A~isgl~-GITEpAIPFgv~~p~--r~i~a~~iGsaVgGal~~~~gv~~~a 299 (359)
T PRK10478 252 ALVMGCV-GVTEGAIPFAAADPL--RVIPSIMVGSVCGAVTAALFGAQCYA 299 (359)
T ss_pred HHHHHHH-hcCccchHHHHhcch--HHHHHHHHHHHHHHHHHHHhCCcccc
Confidence 3445554 8999999 9988766 67788999999999998887764443
No 217
>PF02535 Zip: ZIP Zinc transporter; InterPro: IPR003689 These ZIP zinc transporter proteins define a family of metal ion transporters that are found in plants, protozoa, fungi, invertebrates, and vertebrates, making it now possible to address questions of metal ion accumulation and homeostasis in diverse organisms [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane
Probab=44.06 E-value=2.9e+02 Score=26.22 Aligned_cols=107 Identities=16% Similarity=0.127 Sum_probs=54.4
Q ss_pred chHHHHHHHHHHHhhhhhhhhccccccccCCcchHHHHHHHHHHHHHHHHhhccc-----CCchHHHHHHHHHhhccccc
Q 016029 274 GWYAVVLIAMYNVGDLIGRYIPLLKFFKLESRKYITAATLSRFLLVPAFYFTAKY-----GDQGWMIMLTSFLGLSNGYL 348 (396)
Q Consensus 274 ~w~~~~~~~~fn~gD~iGR~l~~~~~~~~~~~~~l~i~sl~R~~fiplfll~~~~-----~~d~~~~i~~~lfgltnGyl 348 (396)
.|...+.+.+.++-+-++=....... . .+++..+...++=.+--|+=.+..+. .+.+...+.-.++|++.|-+
T Consensus 200 ~~~~~~ai~~Hk~~e~~~~~~~l~~~-~-~~~~~~~~~~~~~sl~~piG~~ig~~~~~~~~~~~~~~~~~~~~a~aaG~~ 277 (317)
T PF02535_consen 200 GWSLFIAIILHKIPEGFALGSILVKA-G-FSKRKALLLLLLFSLSTPIGALIGIAISNSGSSSSSDIVSGILLAFAAGTF 277 (317)
T ss_pred HHHHHHHHHHhHhHHHhhhhhhhhhh-c-cccchhhHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHH
Confidence 47777888888888887776654331 1 23343333444334444544333221 24444555677788888766
Q ss_pred cceeeec-cCCCCCchhhhhhhhHHHHHHHHHHHH
Q 016029 349 TVCVLTA-APKGYKGPEQNALGNLLVLFLLGGIFA 382 (396)
Q Consensus 349 ~t~~mi~-~p~~v~~~e~e~ag~~~~~~l~~Gl~~ 382 (396)
--.+... =|+..+.+++........+++.+|..+
T Consensus 278 lyv~~~ell~~~~~~~~~~~~~~~~~~~~~~G~~~ 312 (317)
T PF02535_consen 278 LYVAFVELLPEEFHNKHSRKSRLLKFLGFLIGFLL 312 (317)
T ss_pred HHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH
Confidence 5544432 244433332212233444444444443
No 218
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=43.46 E-value=1.6e+02 Score=30.33 Aligned_cols=72 Identities=11% Similarity=0.131 Sum_probs=38.5
Q ss_pred hhhhccchhhccccCCHHHHHHHHhhhhhHhHHHHHH-HHHHHhhccCCccccchhhhHHhHHHHHHHHHHHHHHH
Q 016029 110 DANVQGGMVGDLSFMTSELIQSFLAGLAASGAITSAL-RLITKAAFENSKDGLRKGALLFFAISSFFEFLCVILYA 184 (396)
Q Consensus 110 ~~~~q~s~~~la~~~p~~~~~a~~~G~g~aGi~~s~~-~ii~~~~~~~~~~~~~~~a~~yF~ia~~~~~~~~~~~~ 184 (396)
+|...++.+-=.-...|+|...+|.-....|-++.++ -.++....+|+ .+.+=..-|.+.+++.+++-+.|.
T Consensus 372 ~g~~~~Gf~~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~---t~~eW~~VF~i~a~i~~~~~i~f~ 444 (466)
T KOG2532|consen 372 SGFNISGFYKNHQDIAPQHAGFVMGIINFVGALAGFIAPLLVGIIVTDN---TREEWRIVFLIAAGILIVGNIIFL 444 (466)
T ss_pred cccchhhhHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCC---CHHHHHHHHHHHHHHHHHhchhee
Confidence 4444455444444447888887775555544444433 34444444322 222334456666666666666665
No 219
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=42.43 E-value=3.3e+02 Score=26.46 Aligned_cols=71 Identities=10% Similarity=-0.091 Sum_probs=40.1
Q ss_pred HHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHHHHHhhhhhhhccchhhccccCCHHH
Q 016029 49 TLAILAYHEAKIDTRRRIIFGYILFFASSLLVLVLDLATSGKGGLGTFIGICVISGAFGVADANVQGGMVGDLSFMTSEL 128 (396)
Q Consensus 49 ~~~~~~~~~~~~~~~~Ri~~~~~~~~i~~~~~~~i~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la~~~p~~~ 128 (396)
...+..++.+|.+.+.-+..+++...+..++.. ..+ ..+...+..++.|++.++............|++.
T Consensus 256 ~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~---~~~-------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~ 325 (382)
T PRK11128 256 IFAFSNRLFRRWSARDLLLLSAICGVVRWGLMG---STT-------ALPWLIVIQILHCGTFTVCHLAAMRYIAARPGSE 325 (382)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH---hhh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHhh
Confidence 334444666776665555555555544433221 111 1344455566778888888887777766666655
Q ss_pred H
Q 016029 129 I 129 (396)
Q Consensus 129 ~ 129 (396)
.
T Consensus 326 ~ 326 (382)
T PRK11128 326 V 326 (382)
T ss_pred h
Confidence 4
No 220
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=42.17 E-value=2.6e+02 Score=28.40 Aligned_cols=128 Identities=9% Similarity=0.046 Sum_probs=68.7
Q ss_pred HHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHHHHHhhhhhhhccchhhc-cccC
Q 016029 46 ALITLAILAYHEAKIDTRRRIIFGYILFFASSLLVLVLDLATSGKGGLGTFIGICVISGAFGVADANVQGGMVGD-LSFM 124 (396)
Q Consensus 46 ~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~i~~~~~~~i~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~l-a~~~ 124 (396)
+.....+.+++.+|+..+.-...+.+++.+=.+.. ...+ + -+....+=.+=|.--+++--+.+-+ +..+
T Consensus 272 E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~---~~~~----~---~~~i~~~klLH~~e~~l~lva~fkYI~~~f 341 (412)
T PF01306_consen 272 EALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGS---GFAT----N---PWVISLIKLLHALEFPLLLVAAFKYITAHF 341 (412)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH---HT------S---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHH---hhhc----c---hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 44455666788888888766666655554322211 1111 0 1112222223333344444455555 5678
Q ss_pred CHHHH-HHHHhh-hhhHhHHHHHHHHHHHhhccCCccccchhhhHHhHHHHHHHHHHHHHHHHHcCC
Q 016029 125 TSELI-QSFLAG-LAASGAITSALRLITKAAFENSKDGLRKGALLFFAISSFFEFLCVILYAFVFPK 189 (396)
Q Consensus 125 p~~~~-~a~~~G-~g~aGi~~s~~~ii~~~~~~~~~~~~~~~a~~yF~ia~~~~~~~~~~~~~~l~k 189 (396)
|+|.. +.++.| |-..|+-..+...+.-...| .. --.-.|+.++.++...+++..+ .++|
T Consensus 342 d~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd----~~-G~~~tylimg~iv~~~~li~~f-~l~~ 402 (412)
T PF01306_consen 342 DKRLSATLYLVGFQFAKQIGIIILSPLAGYLYD----RI-GFQHTYLIMGLIVLPFTLISAF-TLKK 402 (412)
T ss_dssp -GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHH----HH-HHHHHHHHHHHHHHHHHHHHHH-HS--
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHh----hc-CcHHHHHHHHHHHHHHHHHhee-eecC
Confidence 88874 566776 55566666666666655432 11 1134789999988888888887 5555
No 221
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=41.80 E-value=3.5e+02 Score=26.55 Aligned_cols=42 Identities=19% Similarity=0.233 Sum_probs=25.3
Q ss_pred HHHHHHhhhhhhhhccccccccCCcchHHHHHHHHHHHHHHHHhhc
Q 016029 281 IAMYNVGDLIGRYIPLLKFFKLESRKYITAATLSRFLLVPAFYFTA 326 (396)
Q Consensus 281 ~~~fn~gD~iGR~l~~~~~~~~~~~~~l~i~sl~R~~fiplfll~~ 326 (396)
..++.+|-.+.|.-.. ...+.+.....++.|++..|+..+..
T Consensus 285 l~l~~lG~~l~~~~~~----~~~~~~~~~~~~~~rlii~P~i~~~~ 326 (385)
T PF03547_consen 285 LALFVLGASLARGPRK----SALGWKPSIIAVLVRLIILPLIGIGI 326 (385)
T ss_pred HHHHHHHHHHhcCCcc----cchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666653211 11223344456889999999987754
No 222
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=41.37 E-value=70 Score=30.19 Aligned_cols=48 Identities=15% Similarity=0.066 Sum_probs=26.8
Q ss_pred hhhhhHhHHHHHHHHHHHhh------ccCCccccchhhhHHhHHHHHHHHHHHH
Q 016029 134 AGLAASGAITSALRLITKAA------FENSKDGLRKGALLFFAISSFFEFLCVI 181 (396)
Q Consensus 134 ~G~g~aGi~~s~~~ii~~~~------~~~~~~~~~~~a~~yF~ia~~~~~~~~~ 181 (396)
+|-|++=.+=+..++++-.+ ++.+++.++...+-|.+++++++-..++
T Consensus 79 iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f 132 (254)
T PF07857_consen 79 IGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIF 132 (254)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHhe
Confidence 44444444444555544333 3444567777788888777765444433
No 223
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=40.95 E-value=4.2e+02 Score=27.24 Aligned_cols=83 Identities=14% Similarity=0.179 Sum_probs=57.1
Q ss_pred ceeehhhhHHHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHHHHHhhhhhhhcc
Q 016029 36 RILTLVYQPFALITLAILAYHEAKIDTRRRIIFGYILFFASSLLVLVLDLATSGKGGLGTFIGICVISGAFGVADANVQG 115 (396)
Q Consensus 36 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~i~~~~~~~i~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~ 115 (396)
.+++..+.+.+.+..++..++.+++..+.-+..+.++..+..++.. .+. .+...++.=++.|++.|..+.
T Consensus 92 s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~---~a~-------~~~~l~~GR~l~G~g~G~~~~ 161 (513)
T KOG0254|consen 92 GLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIA---LAP-------SWYQLIVGRILTGLGVGGASV 161 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH---Hhh-------hHHHHHHHHHHhccchhhhhh
Confidence 4677777777888888888888998888888888777766655432 221 144445555677888888876
Q ss_pred chhhccccCCHHH
Q 016029 116 GMVGDLSFMTSEL 128 (396)
Q Consensus 116 s~~~la~~~p~~~ 128 (396)
..--+.+...|+.
T Consensus 162 ~~piy~sEiap~~ 174 (513)
T KOG0254|consen 162 LAPVYISEIAPAH 174 (513)
T ss_pred cchhhHhhcCChh
Confidence 6666666665553
No 224
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=39.84 E-value=2.8e+02 Score=26.46 Aligned_cols=92 Identities=16% Similarity=0.022 Sum_probs=50.4
Q ss_pred hhHHHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHHHHHhhhhhhhccchhhcc
Q 016029 42 YQPFALITLAILAYHEAKIDTRRRIIFGYILFFASSLLVLVLDLATSGKGGLGTFIGICVISGAFGVADANVQGGMVGDL 121 (396)
Q Consensus 42 ~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~i~~~~~~~i~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la 121 (396)
+.....++.++..++.+|++.++-+..+..+..+..++.. ..+ +.. ....+.+.|.+.+..-...++++
T Consensus 187 ~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~---~~~----~~~----~~~~~~l~g~~~s~i~P~~~s~a 255 (310)
T TIGR01272 187 TWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAA---LTH----GYV----AMWFVLALGLFNSIMFPTIFSLA 255 (310)
T ss_pred HHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH---HcC----CHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455667777888898865544444444444332221 111 111 12344478899999999999988
Q ss_pred cc-CCHH--HHHHHHhhhhhHhHHHH
Q 016029 122 SF-MTSE--LIQSFLAGLAASGAITS 144 (396)
Q Consensus 122 ~~-~p~~--~~~a~~~G~g~aGi~~s 144 (396)
.. +|++ ...+++....++|.+..
T Consensus 256 ~~~~~~~~~~asai~~~~~~Gg~i~P 281 (310)
T TIGR01272 256 LNALGRHTSQGSGILCLAIVGGAIVP 281 (310)
T ss_pred HhhhhhhhhhhHHHHHHHHhcchHHH
Confidence 66 5543 22334433334444443
No 225
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=39.69 E-value=1.3e+02 Score=28.89 Aligned_cols=59 Identities=14% Similarity=0.230 Sum_probs=34.2
Q ss_pred cCCchHHHHHHHHHhhccccccceeeeccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHH
Q 016029 328 YGDQGWMIMLTSFLGLSNGYLTVCVLTAAPKGYKGPEQNALGNLLVLFLLGGIFAGATLD 387 (396)
Q Consensus 328 ~~~d~~~~i~~~lfgltnGyl~t~~mi~~p~~v~~~e~e~ag~~~~~~l~~Gl~~Gs~~s 387 (396)
.++.+...+..++.|+..|...+..-...++.. +++|..+-.+.......|..+|..+.
T Consensus 84 ~~~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~i~~~~~ 142 (355)
T TIGR00896 84 APGTALLFAGTALIGVGIAIINVLLPSLIKRDF-PQRVGLMTGLYSMALMGGAALAAAAT 142 (355)
T ss_pred hccHHHHHHHHHHHHHHHHHHhccchHHHHHhC-cchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555677888887765544333333333 45666666666666667776666554
No 226
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=37.78 E-value=4.5e+02 Score=26.64 Aligned_cols=84 Identities=13% Similarity=0.129 Sum_probs=53.4
Q ss_pred HHHHHHHHHhhhhhhhccchhhccccC-CHH----HHHHHH----hhhhhHhHHHHHHHHHHHhhccCCccccchhhhHH
Q 016029 98 GICVISGAFGVADANVQGGMVGDLSFM-TSE----LIQSFL----AGLAASGAITSALRLITKAAFENSKDGLRKGALLF 168 (396)
Q Consensus 98 ~~l~~~~~~g~~~~~~q~s~~~la~~~-p~~----~~~a~~----~G~g~aGi~~s~~~ii~~~~~~~~~~~~~~~a~~y 168 (396)
..-..+++.|+++|+...+..++.=.+ +++ +++++= ..+|+++++...++-+.....++ ++...--.=
T Consensus 303 ~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~---~~~~aY~~V 379 (403)
T PF03209_consen 303 LFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGN---SPALAYGVV 379 (403)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC---CcchHHHHH
Confidence 344566788999999988877774333 223 554443 45677788888888888877653 122222233
Q ss_pred hHHHHHHHHHHHHHHH
Q 016029 169 FAISSFFEFLCVILYA 184 (396)
Q Consensus 169 F~ia~~~~~~~~~~~~ 184 (396)
|.+-.+..++|+..-.
T Consensus 380 F~lEa~ll~~a~~ll~ 395 (403)
T PF03209_consen 380 FALEAVLLLAALVLLG 395 (403)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666676677776554
No 227
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=37.76 E-value=2e+02 Score=29.72 Aligned_cols=80 Identities=14% Similarity=0.235 Sum_probs=53.8
Q ss_pred eehhhhHHHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHHHHHhhhhhhhccch
Q 016029 38 LTLVYQPFALITLAILAYHEAKIDTRRRIIFGYILFFASSLLVLVLDLATSGKGGLGTFIGICVISGAFGVADANVQGGM 117 (396)
Q Consensus 38 ~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~i~~~~~~~i~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~ 117 (396)
++.++++.-.+..-+..++.+|.+.+.-+..|..+..+.++....+ ..||..+++-.+.|+|-+...+..
T Consensus 73 l~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs----------~~Fwq~~l~R~~vGiGeAs~~~ia 142 (493)
T KOG1330|consen 73 LQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFS----------NHFWQVLLCRGFVGIGEASYSPIA 142 (493)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHH----------HHHHHHHHHHHHhccchhhhcccc
Confidence 4444444444444555577888888888888888888777664322 238888888888888888777777
Q ss_pred hhcccc-CCHH
Q 016029 118 VGDLSF-MTSE 127 (396)
Q Consensus 118 ~~la~~-~p~~ 127 (396)
-++.+. +|+.
T Consensus 143 ~s~IaD~f~~~ 153 (493)
T KOG1330|consen 143 PSLIADSFPDD 153 (493)
T ss_pred hhHhhhcCcch
Confidence 777544 4543
No 228
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=35.75 E-value=5.1e+02 Score=26.71 Aligned_cols=102 Identities=19% Similarity=0.220 Sum_probs=52.2
Q ss_pred ehhhhHHHHHHHHHHHHhhccCCcc--hhhHHHHHHHHHHHHHHHHh---hhccCCCCCchHHHHHHHHHHHHhhhhhhh
Q 016029 39 TLVYQPFALITLAILAYHEAKIDTR--RRIIFGYILFFASSLLVLVL---DLATSGKGGLGTFIGICVISGAFGVADANV 113 (396)
Q Consensus 39 ~~~~~~~~l~~~~~~~~~~~~~~~~--~Ri~~~~~~~~i~~~~~~~i---~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~ 113 (396)
.+.-|+....+.++..++++|+..+ .-+..++++..+..+. .++ +... +.....-|| +..++.|.+.|-.
T Consensus 323 ~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~-g~~G~~~~~~-g~~~~~~f~---~~a~~~G~~~G~~ 397 (477)
T PF11700_consen 323 GLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLY-GLFGFWPSFF-GLKSPWEFW---VLAVLIGLFMGGI 397 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH-HHHHhhhccc-CcccHHHHH---HHHHHHHHHhhhH
Confidence 3445556666677777889999888 3333444443222211 112 1100 111122233 3444667777777
Q ss_pred ccchhhcccc-CCHHHHHHHHhhhhhHhHHHHH
Q 016029 114 QGGMVGDLSF-MTSELIQSFLAGLAASGAITSA 145 (396)
Q Consensus 114 q~s~~~la~~-~p~~~~~a~~~G~g~aGi~~s~ 145 (396)
|+..=++.+. .|++..+-+..=-++.|=.++.
T Consensus 398 qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~ 430 (477)
T PF11700_consen 398 QSASRSLFSRLIPPGREAEFFGLYAITGKASSW 430 (477)
T ss_pred HHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHH
Confidence 7777777544 5666655555444444443333
No 229
>PF13038 DUF3899: Domain of unknown function (DUF3899)
Probab=34.09 E-value=2.2e+02 Score=21.94 Aligned_cols=18 Identities=11% Similarity=0.388 Sum_probs=10.9
Q ss_pred HHhHHHHHHHHHHHHHHH
Q 016029 167 LFFAISSFFEFLCVILYA 184 (396)
Q Consensus 167 ~yF~ia~~~~~~~~~~~~ 184 (396)
..|.++.+..++..+.+.
T Consensus 4 ~~Fl~~l~lliig~~~~v 21 (92)
T PF13038_consen 4 ILFLVGLILLIIGGFLFV 21 (92)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 356677766666665554
No 230
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=33.57 E-value=1.6e+02 Score=29.33 Aligned_cols=55 Identities=16% Similarity=0.111 Sum_probs=40.6
Q ss_pred HHHHHHHHhhccccccceeeeccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHH
Q 016029 334 MIMLTSFLGLSNGYLTVCVLTAAPKGYKGPEQNALGNLLVLFLLGGIFAGATLDW 388 (396)
Q Consensus 334 ~~i~~~lfgltnGyl~t~~mi~~p~~v~~~e~e~ag~~~~~~l~~Gl~~Gs~~s~ 388 (396)
..+.=++.|+..|-....+..+..+..++++|..+..+.......|..+|..+..
T Consensus 127 l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~ 181 (432)
T PRK10406 127 LLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVV 181 (432)
T ss_pred HHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456678899888666666677677778888888877777777788777776543
No 231
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=32.56 E-value=4.1e+02 Score=24.65 Aligned_cols=23 Identities=22% Similarity=0.148 Sum_probs=13.2
Q ss_pred HHHHHHhhhhhHhHHHHHHHHHH
Q 016029 128 LIQSFLAGLAASGAITSALRLIT 150 (396)
Q Consensus 128 ~~~a~~~G~g~aGi~~s~~~ii~ 150 (396)
+.--+..|.-+||+++.+...+-
T Consensus 11 ~~~~illg~~iGg~~G~~~~~~~ 33 (248)
T PF11368_consen 11 FLLLILLGGLIGGFIGFFIGRIG 33 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445566666666666555444
No 232
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=32.01 E-value=1.4e+02 Score=30.89 Aligned_cols=58 Identities=21% Similarity=0.316 Sum_probs=45.3
Q ss_pred hHHHHHHHHHhhcccccccee--eeccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 016029 332 GWMIMLTSFLGLSNGYLTVCV--LTAAPKGYKGPEQNALGNLLVLFLLGGIFAGATLDWLWLI 392 (396)
Q Consensus 332 ~~~~i~~~lfgltnGyl~t~~--mi~~p~~v~~~e~e~ag~~~~~~l~~Gl~~Gs~~s~~~~~ 392 (396)
||+++ +.+++.|+....+ +.+.++..++|+|..+=.++.-+...|+++|..++-.+.-
T Consensus 114 ~~~~~---~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~ 173 (463)
T KOG2816|consen 114 YWFFL---LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVK 173 (463)
T ss_pred HHHhh---hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 66554 8899998888666 4556777888899988888888888888888888766543
No 233
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=31.33 E-value=2.1e+02 Score=28.98 Aligned_cols=41 Identities=7% Similarity=-0.022 Sum_probs=26.5
Q ss_pred HhhcccCCchHHHHHHHHHhhccccccceeeeccCCCCCch
Q 016029 323 YFTAKYGDQGWMIMLTSFLGLSNGYLTVCVLTAAPKGYKGP 363 (396)
Q Consensus 323 ll~~~~~~d~~~~i~~~lfgltnGyl~t~~mi~~p~~v~~~ 363 (396)
..|...++.++..++..+.|++=+.+-..+|-|-.+..|++
T Consensus 304 ~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~r 344 (412)
T PF01306_consen 304 IGSGFATNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKR 344 (412)
T ss_dssp HHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GG
T ss_pred HHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHh
Confidence 34445567777777899999988887777777755544443
No 234
>KOG2881 consensus Predicted membrane protein [Function unknown]
Probab=31.30 E-value=4.7e+02 Score=24.92 Aligned_cols=22 Identities=9% Similarity=0.067 Sum_probs=17.7
Q ss_pred HHHHHHHHHHhhhhhhhhcccc
Q 016029 277 AVVLIAMYNVGDLIGRYIPLLK 298 (396)
Q Consensus 277 ~~~~~~~fn~gD~iGR~l~~~~ 298 (396)
.+-+.+|=.+.-.-||++++..
T Consensus 246 ~iGH~lCT~lAVigGk~lAskI 267 (294)
T KOG2881|consen 246 IIGHALCTGLAVIGGKYLASKI 267 (294)
T ss_pred HHHHHHHHHHHHhhhHHHhhhh
Confidence 4677788888899999999754
No 235
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=29.23 E-value=1.7e+02 Score=29.74 Aligned_cols=96 Identities=15% Similarity=0.059 Sum_probs=54.0
Q ss_pred hhhhHHHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHHHHHhhhhhhhccchhh
Q 016029 40 LVYQPFALITLAILAYHEAKIDTRRRIIFGYILFFASSLLVLVLDLATSGKGGLGTFIGICVISGAFGVADANVQGGMVG 119 (396)
Q Consensus 40 ~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~i~~~~~~~i~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~ 119 (396)
..|...-.++..+...+.+|++.++-.....++..+.++.+. ... + .+-+..+.++|.+++++-...++
T Consensus 279 s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~---l~~----g----~v~~~~l~~ig~F~simfPTIfs 347 (422)
T COG0738 279 SFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVA---LIG----G----VVALYALFLIGLFNSIMFPTIFS 347 (422)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH---Hhc----C----hHHHHHHHHHHHHhHHHHHHHHH
Confidence 335555556666777777777766554444333333333322 211 1 22345566789999999999999
Q ss_pred cccc-CCHHHHHH---HHhhhhhHhHHHHHHH
Q 016029 120 DLSF-MTSELIQS---FLAGLAASGAITSALR 147 (396)
Q Consensus 120 la~~-~p~~~~~a---~~~G~g~aGi~~s~~~ 147 (396)
++.. +| ++++. +..=..++|-+...++
T Consensus 348 lal~~l~-~~ts~~s~~l~maivGGAiiP~l~ 378 (422)
T COG0738 348 LALKNLG-EHTSVGSGLLVMAIVGGAIIPPLQ 378 (422)
T ss_pred HHHhccC-ccccccceeeeeheecchHHHHHH
Confidence 9865 45 55543 3333344444444433
No 236
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.03 E-value=2.5e+02 Score=29.03 Aligned_cols=104 Identities=11% Similarity=0.090 Sum_probs=73.5
Q ss_pred HHHHHHHHHHhhhhhhhhccccccccCCcchHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHhhccccccceeeecc
Q 016029 277 AVVLIAMYNVGDLIGRYIPLLKFFKLESRKYITAATLSRFLLVPAFYFTAKYGDQGWMIMLTSFLGLSNGYLTVCVLTAA 356 (396)
Q Consensus 277 ~~~~~~~fn~gD~iGR~l~~~~~~~~~~~~~l~i~sl~R~~fiplfll~~~~~~d~~~~i~~~lfgltnGyl~t~~mi~~ 356 (396)
..++...|-++-+++-.+.+. -++|+..++ +....+.|.+.=.++|.++.++-.+++|+.-+.+-+.-=.|-
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~-----i~~K~~lv~---ga~~y~~f~~gfl~~N~y~~yfssallG~Gaallw~GqG~yl 127 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNF-----LGPKWALVI---GATCYAAFPLGFLFPNSYYLYFSSALLGFGAALLWTGQGGYL 127 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHH-----hhHHHHHHH---HhHHHHHHHHHHHhcchHHHHHHHHHhhhhHHheecccceeh
Confidence 567777777777777666543 245654433 666777777766677788888789999998886555544454
Q ss_pred CCCCCchhhhhhhhHHHHHHHHHHHHHHHHHH
Q 016029 357 PKGYKGPEQNALGNLLVLFLLGGIFAGATLDW 388 (396)
Q Consensus 357 p~~v~~~e~e~ag~~~~~~l~~Gl~~Gs~~s~ 388 (396)
.+..++|.+|.--.+..-....++..|+..-+
T Consensus 128 t~~st~~tie~Nisi~Wai~~~~li~Ggi~l~ 159 (461)
T KOG3098|consen 128 TSNSTRETIERNISIFWAIGQSSLIIGGIILF 159 (461)
T ss_pred hhcCChhhHHHHHHHHHHHHHHHHHhhhHhhe
Confidence 55566777888888888888888888887543
No 237
>PF04145 Ctr: Ctr copper transporter family; InterPro: IPR007274 The redox active metal copper is an essential cofactor in critical biological processes such as respiration, iron transport, oxidative stress protection, hormone production, and pigmentation. A widely conserved family of high-affinity copper transport proteins (Ctr proteins) mediates copper uptake at the plasma membrane. A series of clustered methionine residues in the hydrophilic extracellular domain, and an MXXXM motif in the second transmembrane domain, are important for copper uptake. These methionines probably coordinate copper during the process of metal transport.; GO: 0005375 copper ion transmembrane transporter activity, 0035434 copper ion transmembrane transport, 0016021 integral to membrane; PDB: 2LS4_A 2LS2_A 2LS3_A.
Probab=27.35 E-value=1.1e+02 Score=25.41 Aligned_cols=18 Identities=17% Similarity=0.248 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHhhhhcc
Q 016029 240 QNIDYAIDMFVIYTLTLS 257 (396)
Q Consensus 240 ~i~~~~~~~~l~f~vTl~ 257 (396)
+...+.+...+.|+.-|.
T Consensus 104 ~~~l~~~~~~l~Y~LMLv 121 (144)
T PF04145_consen 104 RALLHFVQVLLGYLLMLV 121 (144)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 455666777777776553
No 238
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=27.08 E-value=6.8e+02 Score=25.47 Aligned_cols=76 Identities=18% Similarity=0.175 Sum_probs=47.1
Q ss_pred HHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHHHHHhhhhhhhccchhhccccCCHHHHH
Q 016029 51 AILAYHEAKIDTRRRIIFGYILFFASSLLVLVLDLATSGKGGLGTFIGICVISGAFGVADANVQGGMVGDLSFMTSELIQ 130 (396)
Q Consensus 51 ~~~~~~~~~~~~~~Ri~~~~~~~~i~~~~~~~i~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la~~~p~~~~~ 130 (396)
+....+.+|+.-|.=...+.++..+.++.+..-+. .+ .++-.+.+-.++|++.+-.-.++--....|||+..+
T Consensus 67 l~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~----~~---~~~~ll~~gll~G~~GasFav~m~~~s~~fP~~~qG 139 (417)
T COG2223 67 LPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVT----YP---STWQLLVIGLLLGLAGASFAVGMPNASFFFPKEKQG 139 (417)
T ss_pred HHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHcc----CC---chHHHHHHHHHHhcccceehcccccccccCChhhhh
Confidence 33445667766655555555555555554432222 12 246777788888988887777766667778988765
Q ss_pred HHH
Q 016029 131 SFL 133 (396)
Q Consensus 131 a~~ 133 (396)
..+
T Consensus 140 ~Al 142 (417)
T COG2223 140 LAL 142 (417)
T ss_pred HHH
Confidence 544
No 239
>PF05968 Bacillus_PapR: Bacillus PapR protein; InterPro: IPR009239 This family consists of the Bacillus species-specific PapR protein. The papR gene belongs to the PlcR regulon and is located 70 bp downstream from plcR. It encodes a 48-amino-acid peptide. Disruption of the papR gene abolishes expression of the PlcR regulon, resulting in a large decrease in haemolysis and virulence in insect larvae. A processed form of PapR activates the PlcR regulon by allowing PlcR to bind to its DNA target. This activating mechanism is strain specific [].
Probab=24.96 E-value=64 Score=21.74 Aligned_cols=19 Identities=37% Similarity=0.494 Sum_probs=17.2
Q ss_pred hhhhhhHHHHHHHHHHHHH
Q 016029 365 QNALGNLLVLFLLGGIFAG 383 (396)
Q Consensus 365 ~e~ag~~~~~~l~~Gl~~G 383 (396)
|-++|.++++++.-|++.|
T Consensus 3 kll~~slltlam~~gislg 21 (48)
T PF05968_consen 3 KLLIGSLLTLAMAWGISLG 21 (48)
T ss_pred hHHHhHHHHHHHHhhhhhh
Confidence 5688999999999999988
No 240
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=24.94 E-value=4.5e+02 Score=22.64 Aligned_cols=95 Identities=17% Similarity=0.192 Sum_probs=50.1
Q ss_pred hhhhhhhhhhHhhchHHHHhhhc---CCC---CCcc---e--eehhhhHHHHHHHHHHHHhhccCCcchhhHHHHHHHHH
Q 016029 7 LGNGCLFSWNSMLTVVDYYVFLF---PQY---HPSR---I--LTLVYQPFALITLAILAYHEAKIDTRRRIIFGYILFFA 75 (396)
Q Consensus 7 lGi~~LlpwN~~ita~~Yf~~~~---~~~---~~~~---~--~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~i 75 (396)
+|+|.++-+-+|-|....=+.-. +++ +.+. + +.+.|... .+..++.+.+.+++..|.-++.+.....+
T Consensus 1 Lg~~f~~~Ftaf~t~~~i~~svi~s~~~~~~~~i~~~~G~~slai~Y~~~-~~s~l~~P~iv~~lg~K~sm~lg~~~y~~ 79 (156)
T PF05978_consen 1 LGIGFMFLFTAFQTQSFIQESVIHSVHERNPSSISAGLGYYSLAILYGSF-AISCLFAPSIVNKLGPKWSMILGSLGYAI 79 (156)
T ss_pred CchHHHHHHHHHhhhhHHHHHHHHHHhhcCcccccccccHHHHHHHHHHH-HHHHHhHHHHHHHHhhHHHHHHHHHHHHH
Confidence 58888888888888753333222 221 1221 1 22333332 23445567777888877777766665543
Q ss_pred HHHHHHHhhhccCCCCCchHHHHHHHHHHHHhhhhhhh
Q 016029 76 SSLLVLVLDLATSGKGGLGTFIGICVISGAFGVADANV 113 (396)
Q Consensus 76 ~~~~~~~i~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~ 113 (396)
-.+.. ..+ ..+..+...++.|++.+++
T Consensus 80 y~~~~----~~~-------~~~~l~~~s~l~G~~~a~l 106 (156)
T PF05978_consen 80 YIASF----FYP-------NSYTLYPASALLGFGAALL 106 (156)
T ss_pred HHHHH----Hhh-------hHHHHHHHHHHHhhhhHHh
Confidence 33221 111 1233455566777776654
No 241
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=23.71 E-value=72 Score=32.24 Aligned_cols=78 Identities=13% Similarity=0.104 Sum_probs=47.0
Q ss_pred cchH-HHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHhhccccccceeeeccCCCCCchhhhhhhhHHHHHHHHHHHHH
Q 016029 305 RKYI-TAATLSRFLLVPAFYFTAKYGDQGWMIMLTSFLGLSNGYLTVCVLTAAPKGYKGPEQNALGNLLVLFLLGGIFAG 383 (396)
Q Consensus 305 ~~~l-~i~sl~R~~fiplfll~~~~~~d~~~~i~~~lfgltnGyl~t~~mi~~p~~v~~~e~e~ag~~~~~~l~~Gl~~G 383 (396)
||.. .++++.=.++.-++-+++.| ..++.-=++.|++||-++ .++.+..+.++|++|..+-..++.+-.+|..+|
T Consensus 97 Rkpvll~c~~~va~s~ll~~~S~~F---~afv~aR~l~Gi~kgnl~-v~rAiisdV~sek~r~l~ms~v~~a~~lGfilG 172 (451)
T KOG2615|consen 97 RKPVLLACLIGVALSYLLWALSRNF---AAFVLARFLGGIFKGNLS-VIRAIISDVVSEKYRPLGMSLVGTAFGLGFILG 172 (451)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhhccCchH-HHHHHHHhhcChhhccceeeeeehhhhcchhhc
Confidence 4443 34444444444444444433 223322689999999775 456666777888899888777776666666554
Q ss_pred HHH
Q 016029 384 ATL 386 (396)
Q Consensus 384 s~~ 386 (396)
=++
T Consensus 173 PmI 175 (451)
T KOG2615|consen 173 PMI 175 (451)
T ss_pred chh
Confidence 433
No 242
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=23.30 E-value=7.6e+02 Score=24.68 Aligned_cols=135 Identities=11% Similarity=0.054 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHHHHHhhhhhhhccchhhcc-cc
Q 016029 45 FALITLAILAYHEAKIDTRRRIIFGYILFFASSLLVLVLDLATSGKGGLGTFIGICVISGAFGVADANVQGGMVGDL-SF 123 (396)
Q Consensus 45 ~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~i~~~~~~~i~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la-~~ 123 (396)
..+.......++.+|++.+.-+..+.+...+=..+.. ... .+......+.+....+=|..-+....+...++ ..
T Consensus 255 aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a---~~~--~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~ 329 (400)
T PF03825_consen 255 AEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYA---YFS--DPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRI 329 (400)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH---Hhc--CCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Confidence 3334444555666676665444444444333222221 110 01111122222223345666666666666654 34
Q ss_pred CCHHH---HHHHHh--hhhhHhHHHHHHHH-HHHhhccCCccccchhhhHHhHHHHHHHHHHHHHHHHHcCC
Q 016029 124 MTSEL---IQSFLA--GLAASGAITSALRL-ITKAAFENSKDGLRKGALLFFAISSFFEFLCVILYAFVFPK 189 (396)
Q Consensus 124 ~p~~~---~~a~~~--G~g~aGi~~s~~~i-i~~~~~~~~~~~~~~~a~~yF~ia~~~~~~~~~~~~~~l~k 189 (396)
.|++. .|++.. ..|+++.+++++.= +-+.. +. +.......++.+++++.++....+. .+-|
T Consensus 330 ~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~-g~---~~~~~~~~~~~v~a~~~~~~~~~f~-~~fk 396 (400)
T PF03825_consen 330 APPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAF-GA---RGMFDWSAVFLVFAVMALVILVLFV-ILFK 396 (400)
T ss_pred CCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh-cc---hhhhhHHHHHHHHHHHHHHHHHHHH-hhcc
Confidence 67665 356553 46777777776553 33332 11 1112233455666666666666665 4434
No 243
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=22.94 E-value=86 Score=29.44 Aligned_cols=120 Identities=11% Similarity=0.125 Sum_probs=65.1
Q ss_pred hccccCceEeeccCCCCCCchHHHHHHHHHHHhhhhhhhhccccccccCCcchHHHHHHHHHHHHHHHHhhccc----CC
Q 016029 255 TLSIFPGFLSEDTGSHSLGGWYAVVLIAMYNVGDLIGRYIPLLKFFKLESRKYITAATLSRFLLVPAFYFTAKY----GD 330 (396)
Q Consensus 255 Tl~vFP~i~~~~~~~~~~~~w~~~~~~~~fn~gD~iGR~l~~~~~~~~~~~~~l~i~sl~R~~fiplfll~~~~----~~ 330 (396)
|.-.|+..+.+.++.-..+.=..-.+-..-|+|..+| ..++...=+.+++..+.+.++.-++=.-...++... .+
T Consensus 17 t~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~ 95 (250)
T PF06813_consen 17 TTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLP 95 (250)
T ss_pred cccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccc
Confidence 3446666654433221111112334566778888887 444442112333333445555554444444444322 24
Q ss_pred chHHHHHHHHHhhccccccceeeeccCCCCCchhhhhhhhHHHHHH
Q 016029 331 QGWMIMLTSFLGLSNGYLTVCVLTAAPKGYKGPEQNALGNLLVLFL 376 (396)
Q Consensus 331 d~~~~i~~~lfgltnGyl~t~~mi~~p~~v~~~e~e~ag~~~~~~l 376 (396)
.|..++.+.+-|.+.+|..|.++...-++-| ++|..+..++--+.
T Consensus 96 ~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~ 140 (250)
T PF06813_consen 96 VWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFF 140 (250)
T ss_pred hHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHH
Confidence 4556667888888888998888877666654 46766655554443
No 244
>PRK15011 sugar efflux transporter B; Provisional
Probab=22.85 E-value=7.1e+02 Score=24.21 Aligned_cols=24 Identities=17% Similarity=0.288 Sum_probs=13.2
Q ss_pred HHHHHHHHHHhhccCCcchhhHHH
Q 016029 46 ALITLAILAYHEAKIDTRRRIIFG 69 (396)
Q Consensus 46 ~l~~~~~~~~~~~~~~~~~Ri~~~ 69 (396)
.++...+..++.+|+..+..+..+
T Consensus 265 ~i~~~~~~G~l~dr~g~~~~~~~~ 288 (393)
T PRK15011 265 EIPTMLIAGYFAKRLGKRFLMRVA 288 (393)
T ss_pred HHHHHHHHHHHHHHhChHHHHHHH
Confidence 334455566677777666433333
No 245
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]
Probab=20.59 E-value=1.4e+02 Score=30.32 Aligned_cols=10 Identities=30% Similarity=0.291 Sum_probs=5.3
Q ss_pred HHHHHhhccc
Q 016029 337 LTSFLGLSNG 346 (396)
Q Consensus 337 ~~~lfgltnG 346 (396)
+....|++-|
T Consensus 386 ~fl~~Gl~~G 395 (406)
T KOG1479|consen 386 FFLVGGLALG 395 (406)
T ss_pred HHHHHHHHHh
Confidence 4455555554
No 246
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=20.21 E-value=3.7e+02 Score=26.26 Aligned_cols=76 Identities=13% Similarity=0.178 Sum_probs=46.0
Q ss_pred HHHHHHHhhhhhhhccchhhc-cccCCHH-------HHHHHHhhhhhHhHHHHHHHHHHHhhccCCccccchhhhHHhHH
Q 016029 100 CVISGAFGVADANVQGGMVGD-LSFMTSE-------LIQSFLAGLAASGAITSALRLITKAAFENSKDGLRKGALLFFAI 171 (396)
Q Consensus 100 l~~~~~~g~~~~~~q~s~~~l-a~~~p~~-------~~~a~~~G~g~aGi~~s~~~ii~~~~~~~~~~~~~~~a~~yF~i 171 (396)
.+...++++|+|..-..+-.+ +-+++++ +-+.+-.+..++++++...--... .+.+-...|.+
T Consensus 37 ~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in~G~~~~~~~~~~i~---------~~~~~~~~f~i 107 (372)
T PF00854_consen 37 YIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGINIGSLFSPTLVPYIQ---------QNYGWFLGFGI 107 (372)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHCCCHHH---------HCS-HHHHHHH
T ss_pred HHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHHhhhhHhhcccchhhc---------cccchhhhhhH
Confidence 344455788888888888887 4557654 123444555555554322111111 12456677899
Q ss_pred HHHHHHHHHHHHH
Q 016029 172 SSFFEFLCVILYA 184 (396)
Q Consensus 172 a~~~~~~~~~~~~ 184 (396)
+.+.++++++.|.
T Consensus 108 ~~~~~~~~~~~f~ 120 (372)
T PF00854_consen 108 PAIGMLLALIVFL 120 (372)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999888885
Done!