Query 016029
Match_columns 396
No_of_seqs 124 out of 743
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 06:40:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016029.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016029hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 98.8 5.4E-07 1.8E-11 88.8 20.4 344 17-388 46-404 (451)
2 3o7q_A L-fucose-proton symport 98.3 1.7E-05 5.9E-10 77.7 16.9 127 16-149 43-175 (438)
3 2gfp_A EMRD, multidrug resista 97.6 1.9E-05 6.3E-10 76.1 1.8 126 12-147 13-144 (375)
4 4gc0_A D-xylose-proton symport 97.4 0.0012 4.2E-08 65.5 12.9 180 12-193 23-226 (491)
5 4aps_A DI-OR tripeptide H+ sym 97.4 0.0037 1.3E-07 62.0 16.5 58 330-387 385-442 (491)
6 2xut_A Proton/peptide symporte 96.8 0.0032 1.1E-07 63.1 9.2 58 330-387 404-461 (524)
7 1pw4_A Glycerol-3-phosphate tr 95.9 0.022 7.5E-07 55.4 9.0 110 278-391 65-179 (451)
8 3o7q_A L-fucose-proton symport 94.3 0.032 1.1E-06 54.0 4.6 116 275-391 61-177 (438)
9 2xut_A Proton/peptide symporte 92.2 0.12 4.1E-06 51.5 4.9 108 278-388 57-169 (524)
10 2cfq_A Lactose permease; trans 90.3 0.16 5.4E-06 49.4 3.5 32 42-73 52-83 (417)
11 4aps_A DI-OR tripeptide H+ sym 86.2 0.53 1.8E-05 46.2 4.2 113 277-391 56-170 (491)
12 2gfp_A EMRD, multidrug resista 85.6 0.27 9.4E-06 46.4 1.7 110 276-388 36-145 (375)
13 4gc0_A D-xylose-proton symport 74.5 7.1 0.00024 37.8 7.8 64 330-393 125-188 (491)
14 2cfq_A Lactose permease; trans 71.7 4.2 0.00014 39.0 5.2 74 46-129 272-346 (417)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=98.76 E-value=5.4e-07 Score=88.84 Aligned_cols=344 Identities=12% Similarity=0.023 Sum_probs=165.3
Q ss_pred HhhchHHHHhhhcCCCCCcceeehhhhHHHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhh-ccCCCCCchH
Q 016029 17 SMLTVVDYYVFLFPQYHPSRILTLVYQPFALITLAILAYHEAKIDTRRRIIFGYILFFASSLLVLVLDL-ATSGKGGLGT 95 (396)
Q Consensus 17 ~~ita~~Yf~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~i~~~~~~~i~~-~~~~~~~~~~ 95 (396)
.+....+++.+++-+.....++...+.+...+...+...+.+|.+.+.-+..+..+..+..++....+. .++
T Consensus 46 ~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~------- 118 (451)
T 1pw4_A 46 NFALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSS------- 118 (451)
T ss_dssp SHHHHHHHTTSSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSS-------
T ss_pred HHHHHHHHHHHHhccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcccc-------
Confidence 333444555544411112233444466666666777778888888766555666666666555443221 211
Q ss_pred HHHHHHHHHHHhhhhhhhccchhhcccc-CCHH----HHHHHHhhhhhHhHHHHHHHHHHHhhccCCccccchhhhHHhH
Q 016029 96 FIGICVISGAFGVADANVQGGMVGDLSF-MTSE----LIQSFLAGLAASGAITSALRLITKAAFENSKDGLRKGALLFFA 170 (396)
Q Consensus 96 f~~~l~~~~~~g~~~~~~q~s~~~la~~-~p~~----~~~a~~~G~g~aGi~~s~~~ii~~~~~~~~~~~~~~~a~~yF~ 170 (396)
++..++.-++.|++.+.......++.+. +|++ .++....+.+++++++..+.-......+ +-+ . .|..
T Consensus 119 ~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g----~w~--~-~f~~ 191 (451)
T 1pw4_A 119 IAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFN----DWH--A-ALYM 191 (451)
T ss_dssp SSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTC----CST--T-CTHH
T ss_pred HHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----cHH--H-HHHH
Confidence 4445556678899999888888888655 4533 3444556677777666555432221111 122 1 2333
Q ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHhhhccCCccccchhhhccCccCccccccccccccc-HHHHH--HHHHHHHHH
Q 016029 171 ISSFFEFLCVILYAFVFPKIPIVKYYRNKAASEGSKTVAADLAAGGIQMLSKEEVEKCSERFS-NKQLL--LQNIDYAID 247 (396)
Q Consensus 171 ia~~~~~~~~~~~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~--k~i~~~~~~ 247 (396)
.+.+..+..+..+. .+++.|.. ++.+++++..+++.. +.+++++++...+.. .++++ |..|...+.
T Consensus 192 ~~~~~~~~~~~~~~-~~~~~~~~-----~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (451)
T 1pw4_A 192 PAFCAILVALFAFA-MMRDTPQS-----CGLPPIEEYKNDYPD-----DYNEKAEQELTAKQIFMQYVLPNKLLWYIAIA 260 (451)
T ss_dssp HHHHHHHHHHHHHH-HCCCSSTT-----TCCCSCTTTCCC------------------CCTHHHHHHTSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-hccCCHhh-----cCCCChhhhcccccc-----cchhhhhcccccccchHHHHHcCHHHHHHHHH
Confidence 33333333444444 45443321 000000000000000 000000000001100 12222 234444444
Q ss_pred HHHHhhhh---ccccCceEeeccCCCCCCchHHHHHHHHHHHhhhhhhhhcccccccc-CCcchHHHHHHHHHHHHHHHH
Q 016029 248 MFVIYTLT---LSIFPGFLSEDTGSHSLGGWYAVVLIAMYNVGDLIGRYIPLLKFFKL-ESRKYITAATLSRFLLVPAFY 323 (396)
Q Consensus 248 ~~l~f~vT---l~vFP~i~~~~~~~~~~~~w~~~~~~~~fn~gD~iGR~l~~~~~~~~-~~~~~l~i~sl~R~~fiplfl 323 (396)
.++..+.. ....|-... +....++...-.....+.++..+|+.+.....-+. .++|........=...+-+.+
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (451)
T 1pw4_A 261 NVFVYLLRYGILDWSPTYLK---EVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIV 337 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHBT---TBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH
Confidence 44333322 223333321 11111233344567788899999998876531111 133333222211111112222
Q ss_pred hhccc-CCchHHHHHHHHHhhccccccceeeeccCCCCCchhhhhhhhHHHHHHHH-HHHHHHHHHH
Q 016029 324 FTAKY-GDQGWMIMLTSFLGLSNGYLTVCVLTAAPKGYKGPEQNALGNLLVLFLLG-GIFAGATLDW 388 (396)
Q Consensus 324 l~~~~-~~d~~~~i~~~lfgltnGyl~t~~mi~~p~~v~~~e~e~ag~~~~~~l~~-Gl~~Gs~~s~ 388 (396)
+.... .+.+...+..++.|+..|........+..+..++++|..+-.+....-.+ |..+|..+.=
T Consensus 338 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g 404 (451)
T 1pw4_A 338 YWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVG 404 (451)
T ss_dssp TTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222 24445556678888877777666666777778888888888888777777 8777776543
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=98.30 E-value=1.7e-05 Score=77.67 Aligned_cols=127 Identities=9% Similarity=-0.056 Sum_probs=78.7
Q ss_pred hHhhchHHHHhhhcCCCCC-cceeehhhhHHHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCch
Q 016029 16 NSMLTVVDYYVFLFPQYHP-SRILTLVYQPFALITLAILAYHEAKIDTRRRIIFGYILFFASSLLVLVLDLATSGKGGLG 94 (396)
Q Consensus 16 N~~ita~~Yf~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~i~~~~~~~i~~~~~~~~~~~ 94 (396)
+.+-...+++.+.+.-++. -.++...+.+...+.......+.+|+..|.-+..+..+..+..++.......+
T Consensus 43 ~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~------- 115 (438)
T 3o7q_A 43 NLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIM------- 115 (438)
T ss_dssp HHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTT-------
T ss_pred HhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccc-------
Confidence 3444446677776642211 12233335555555666667788998877777777777766665542222321
Q ss_pred HHHHHHHHHHHHhhhhhhhccchhhcccc-CCHHH----HHHHHhhhhhHhHHHHHHHHH
Q 016029 95 TFIGICVISGAFGVADANVQGGMVGDLSF-MTSEL----IQSFLAGLAASGAITSALRLI 149 (396)
Q Consensus 95 ~f~~~l~~~~~~g~~~~~~q~s~~~la~~-~p~~~----~~a~~~G~g~aGi~~s~~~ii 149 (396)
.++..++.-++.|++.+..+....++.+. +|++. ++....+.+++++++..+--.
T Consensus 116 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~ 175 (438)
T 3o7q_A 116 NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQS 175 (438)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred cHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 16666777788999999999888888655 45443 455667777777777665443
No 3
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=97.56 E-value=1.9e-05 Score=76.06 Aligned_cols=126 Identities=8% Similarity=0.019 Sum_probs=77.3
Q ss_pred hhhhhHhhchHHHHhhhcCCCC-CcceeehhhhHHHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhhccCCC
Q 016029 12 LFSWNSMLTVVDYYVFLFPQYH-PSRILTLVYQPFALITLAILAYHEAKIDTRRRIIFGYILFFASSLLVLVLDLATSGK 90 (396)
Q Consensus 12 LlpwN~~ita~~Yf~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~i~~~~~~~i~~~~~~~ 90 (396)
-+.++.+....+.+.+++.-++ ...+....+.....+.......+.+|.+.|.-+..+..+..+..++....+
T Consensus 13 ~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~------ 86 (375)
T 2gfp_A 13 QMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTS------ 86 (375)
T ss_dssp HHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhc------
Confidence 3455666666666666553211 112333445556666666677788999887777777777666655543221
Q ss_pred CCchHHHHHHHHHHHHhhhhhhhccchhhccccC-CHH----HHHHHHhhhhhHhHHHHHHH
Q 016029 91 GGLGTFIGICVISGAFGVADANVQGGMVGDLSFM-TSE----LIQSFLAGLAASGAITSALR 147 (396)
Q Consensus 91 ~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la~~~-p~~----~~~a~~~G~g~aGi~~s~~~ 147 (396)
.++..++..++.|++.+..+....++.+.. |++ .+.....+.+++++++..+.
T Consensus 87 ----~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 144 (375)
T 2gfp_A 87 ----SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIG 144 (375)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred ----cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 255566667788888888888877776553 322 45666677777766665543
No 4
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=97.42 E-value=0.0012 Score=65.52 Aligned_cols=180 Identities=13% Similarity=0.076 Sum_probs=90.8
Q ss_pred hhhhhHhh-c-hHHHHhhhcCCC-CC--------cceeehhhhHHHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHH
Q 016029 12 LFSWNSML-T-VVDYYVFLFPQY-HP--------SRILTLVYQPFALITLAILAYHEAKIDTRRRIIFGYILFFASSLLV 80 (396)
Q Consensus 12 LlpwN~~i-t-a~~Yf~~~~~~~-~~--------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~i~~~~~ 80 (396)
+..|+.-+ + +.+++++.+... +. ..++.-.+.+...++.++...+.+|+..|.=+..+.+++.+..++.
T Consensus 23 ~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~ 102 (491)
T 4gc0_A 23 LFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGS 102 (491)
T ss_dssp HHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 44565433 2 557776665321 11 1123333555566667777788899877766667777776665543
Q ss_pred HHhhhccCC-----C---CCchHHHHHHHHHHHHhhhhhhhccchhhccccC-CHHH----HHHHHhhhhhHhHHHHHHH
Q 016029 81 LVLDLATSG-----K---GGLGTFIGICVISGAFGVADANVQGGMVGDLSFM-TSEL----IQSFLAGLAASGAITSALR 147 (396)
Q Consensus 81 ~~i~~~~~~-----~---~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la~~~-p~~~----~~a~~~G~g~aGi~~s~~~ 147 (396)
...+..... . .....++..++.=++.|++.|........+.+.. |++. ......+...+.+++.+..
T Consensus 103 a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~ 182 (491)
T 4gc0_A 103 AWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVN 182 (491)
T ss_dssp HCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcc
Confidence 321110000 0 0012255556666788999888888888887664 5443 3333445555555555554
Q ss_pred HHHHhhccCCccccchhhhHHhHHHHHHHHHHHHHHHHHcCCChHH
Q 016029 148 LITKAAFENSKDGLRKGALLFFAISSFFEFLCVILYAFVFPKIPIV 193 (396)
Q Consensus 148 ii~~~~~~~~~~~~~~~a~~yF~ia~~~~~~~~~~~~~~l~k~~~~ 193 (396)
.......+....+. ..-...+.+..+..++.+.... .++.+|..
T Consensus 183 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~peSp~~ 226 (491)
T 4gc0_A 183 YFIARSGDASWLNT-DGWRYMFASECIPALLFLMLLY-TVPESPRW 226 (491)
T ss_dssp HHHHTTSCTTTTTT-THHHHHHHTTHHHHHHHHHHGG-GSCCCHHH
T ss_pred hhhccccccccccc-hhhHHHhhhhhhhhhhhhhhhh-cCCCChHH
Confidence 44433222111111 1222233333433333333333 55666654
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=97.41 E-value=0.0037 Score=62.03 Aligned_cols=58 Identities=14% Similarity=0.052 Sum_probs=46.3
Q ss_pred CchHHHHHHHHHhhccccccceeeeccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHH
Q 016029 330 DQGWMIMLTSFLGLSNGYLTVCVLTAAPKGYKGPEQNALGNLLVLFLLGGIFAGATLD 387 (396)
Q Consensus 330 ~d~~~~i~~~lfgltnGyl~t~~mi~~p~~v~~~e~e~ag~~~~~~l~~Gl~~Gs~~s 387 (396)
+.++..+..++.|+..|......+.+..+..++++|..+..+....-.+|-.+|+.+.
T Consensus 385 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~ 442 (491)
T 4aps_A 385 SPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLV 442 (491)
T ss_dssp CTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHG
T ss_pred cHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666788999999888877788888888888898888888888888888887653
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=96.82 E-value=0.0032 Score=63.13 Aligned_cols=58 Identities=12% Similarity=0.054 Sum_probs=44.6
Q ss_pred CchHHHHHHHHHhhccccccceeeeccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHH
Q 016029 330 DQGWMIMLTSFLGLSNGYLTVCVLTAAPKGYKGPEQNALGNLLVLFLLGGIFAGATLD 387 (396)
Q Consensus 330 ~d~~~~i~~~lfgltnGyl~t~~mi~~p~~v~~~e~e~ag~~~~~~l~~Gl~~Gs~~s 387 (396)
+.++.++..+++|+..|......+.+..+.+++++|..+..+......+|-.+|..+.
T Consensus 404 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~ 461 (524)
T 2xut_A 404 SIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLAN 461 (524)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566788999998888887777777788888888888777777777777776654
No 7
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=95.92 E-value=0.022 Score=55.39 Aligned_cols=110 Identities=10% Similarity=-0.061 Sum_probs=73.8
Q ss_pred HHHHHHHHHhhhhhhhhccccccccCCcch-HHHHHHHHHHHHHHHHhhcc----cCCchHHHHHHHHHhhcccccccee
Q 016029 278 VVLIAMYNVGDLIGRYIPLLKFFKLESRKY-ITAATLSRFLLVPAFYFTAK----YGDQGWMIMLTSFLGLSNGYLTVCV 352 (396)
Q Consensus 278 ~~~~~~fn~gD~iGR~l~~~~~~~~~~~~~-l~i~sl~R~~fiplfll~~~----~~~d~~~~i~~~lfgltnGyl~t~~ 352 (396)
-.....+.++..+|....+...=+. ++|. +.+..++..+. .+++.. .++-+...+..++.|+..|......
T Consensus 65 g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~ 140 (451)
T 1pw4_A 65 GFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAV---MLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPC 140 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHH---HHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHHHHHH---HHHHHhhhhccccHHHHHHHHHHHHHHhhhccchH
Confidence 3446677777777776654421122 3343 33333333322 223322 3455666677899999999888888
Q ss_pred eeccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 016029 353 LTAAPKGYKGPEQNALGNLLVLFLLGGIFAGATLDWLWL 391 (396)
Q Consensus 353 mi~~p~~v~~~e~e~ag~~~~~~l~~Gl~~Gs~~s~~~~ 391 (396)
..+.++..++++|..+..+......+|..+|..++-.++
T Consensus 141 ~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 179 (451)
T 1pw4_A 141 GRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGM 179 (451)
T ss_dssp HHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred HHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888889999999999999999999999988875544
No 8
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=94.35 E-value=0.032 Score=54.04 Aligned_cols=116 Identities=13% Similarity=-0.025 Sum_probs=76.0
Q ss_pred hHHHHHHHHHHHhhhhhhhhccccccccCCcchHHHHH-HHHHHHHHHHHhhcccCCchHHHHHHHHHhhccccccceee
Q 016029 275 WYAVVLIAMYNVGDLIGRYIPLLKFFKLESRKYITAAT-LSRFLLVPAFYFTAKYGDQGWMIMLTSFLGLSNGYLTVCVL 353 (396)
Q Consensus 275 w~~~~~~~~fn~gD~iGR~l~~~~~~~~~~~~~l~i~s-l~R~~fiplfll~~~~~~d~~~~i~~~lfgltnGyl~t~~m 353 (396)
...-.....+.++..++....+...=+ .++|...+.. +.-.+...+.......++.+..++..++.|+..|-......
T Consensus 61 ~~~g~~~~~~~~~~~i~~~~~G~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~ 139 (438)
T 3o7q_A 61 FQAGLIQSAFYFGYFIIPIPAGILMKK-LSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAAN 139 (438)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHH-hcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHH
Confidence 334455678888888877766542112 2444433332 22222222221113334556666678999999998888888
Q ss_pred eccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 016029 354 TAAPKGYKGPEQNALGNLLVLFLLGGIFAGATLDWLWL 391 (396)
Q Consensus 354 i~~p~~v~~~e~e~ag~~~~~~l~~Gl~~Gs~~s~~~~ 391 (396)
.+..+..++++|..+-.+...+..+|..+|..++-.+.
T Consensus 140 ~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 177 (438)
T 3o7q_A 140 PFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_dssp HHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888889999999888999999999999988776554
No 9
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=92.20 E-value=0.12 Score=51.48 Aligned_cols=108 Identities=9% Similarity=-0.033 Sum_probs=64.5
Q ss_pred HHHHHHHHHhhhhhhhhccccccccCCcch-HHHHHHHHHHHHHHHHhhcccC-CchHHHHHHHHHhhccccccceeeec
Q 016029 278 VVLIAMYNVGDLIGRYIPLLKFFKLESRKY-ITAATLSRFLLVPAFYFTAKYG-DQGWMIMLTSFLGLSNGYLTVCVLTA 355 (396)
Q Consensus 278 ~~~~~~fn~gD~iGR~l~~~~~~~~~~~~~-l~i~sl~R~~fiplfll~~~~~-~d~~~~i~~~lfgltnGyl~t~~mi~ 355 (396)
-.....+.++..+|....+...=+..++|. +.+..+...+. .+++...+ +.+..++..++.|+..|........+
T Consensus 57 g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~ 133 (524)
T 2xut_A 57 KDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVG---HAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSF 133 (524)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHH---HHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH---HHHHHHhcccHHHHHHHHHHHHHhccccchhHHHH
Confidence 344667777777777665442111203343 33333333322 22222223 45556667888999998888888888
Q ss_pred cCCCCCchhhhhhhhH---HHHHHHHHHHHHHHHHH
Q 016029 356 APKGYKGPEQNALGNL---LVLFLLGGIFAGATLDW 388 (396)
Q Consensus 356 ~p~~v~~~e~e~ag~~---~~~~l~~Gl~~Gs~~s~ 388 (396)
.++..++++|..+... ......+|..+|..++-
T Consensus 134 ~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~ 169 (524)
T 2xut_A 134 MGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMP 169 (524)
T ss_dssp HHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTST
T ss_pred HHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888766665 56666677777665543
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=90.31 E-value=0.16 Score=49.36 Aligned_cols=32 Identities=13% Similarity=0.240 Sum_probs=22.2
Q ss_pred hhHHHHHHHHHHHHhhccCCcchhhHHHHHHH
Q 016029 42 YQPFALITLAILAYHEAKIDTRRRIIFGYILF 73 (396)
Q Consensus 42 ~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~ 73 (396)
+.+...+.+.+...+.+|+..+..+..+..+.
T Consensus 52 ~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~ 83 (417)
T 2cfq_A 52 ISLFSLLFQPLFGLLSDKLGLRKYLLWIITGM 83 (417)
T ss_dssp HHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 45555566677778889998877776666554
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=86.18 E-value=0.53 Score=46.22 Aligned_cols=113 Identities=13% Similarity=0.023 Sum_probs=70.0
Q ss_pred HHHHHHHHHHhhhhhhhhccccccccCCcchHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHhhccccccceeeecc
Q 016029 277 AVVLIAMYNVGDLIGRYIPLLKFFKLESRKYITAATLSRFLLVPAFYFTAKYGDQGWMIMLTSFLGLSNGYLTVCVLTAA 356 (396)
Q Consensus 277 ~~~~~~~fn~gD~iGR~l~~~~~~~~~~~~~l~i~sl~R~~fiplfll~~~~~~d~~~~i~~~lfgltnGyl~t~~mi~~ 356 (396)
.-.....+.++-.+|+...+...=+..++|...... -.+.....+++...++.+..++..++.|+..|-.......+.
T Consensus 56 ~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 133 (491)
T 4aps_A 56 AASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWG--GVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLV 133 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHH--HHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHH--HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHH
Confidence 445567788888888777654211201444433222 233333333444445666667778899999988887777777
Q ss_pred CCCCCchh--hhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 016029 357 PKGYKGPE--QNALGNLLVLFLLGGIFAGATLDWLWL 391 (396)
Q Consensus 357 p~~v~~~e--~e~ag~~~~~~l~~Gl~~Gs~~s~~~~ 391 (396)
.+..++++ |..+-.+......+|..+|..++-.+.
T Consensus 134 ~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~ 170 (491)
T 4aps_A 134 GTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQ 170 (491)
T ss_dssp HHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHH
Confidence 77777766 555555566777788888777665443
No 12
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=85.61 E-value=0.27 Score=46.40 Aligned_cols=110 Identities=13% Similarity=0.027 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHhhhhhhhhccccccccCCcchHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHhhccccccceeeec
Q 016029 276 YAVVLIAMYNVGDLIGRYIPLLKFFKLESRKYITAATLSRFLLVPAFYFTAKYGDQGWMIMLTSFLGLSNGYLTVCVLTA 355 (396)
Q Consensus 276 ~~~~~~~~fn~gD~iGR~l~~~~~~~~~~~~~l~i~sl~R~~fiplfll~~~~~~d~~~~i~~~lfgltnGyl~t~~mi~ 355 (396)
..-.....+.++..+++...+...=+..++|.+.+..+...+...+.... ++.+...+..++.|+..|........+
T Consensus 36 ~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~l~g~~~~~~~~~~~~~ 112 (375)
T 2gfp_A 36 AVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT---SSLTVLIAASAMQGMGTGVGGVMARTL 112 (375)
T ss_dssp HHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 34456778888888887765542112223444444444444433333222 234455556888899888777777777
Q ss_pred cCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHH
Q 016029 356 APKGYKGPEQNALGNLLVLFLLGGIFAGATLDW 388 (396)
Q Consensus 356 ~p~~v~~~e~e~ag~~~~~~l~~Gl~~Gs~~s~ 388 (396)
.++..++++|..+..+.......|..+|..++-
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 145 (375)
T 2gfp_A 113 PRDLYERTQLRHANSLLNMGILVSPLLAPLIGG 145 (375)
T ss_dssp HHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 677677778888888888888888888877764
No 13
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=74.49 E-value=7.1 Score=37.83 Aligned_cols=64 Identities=6% Similarity=-0.020 Sum_probs=53.8
Q ss_pred CchHHHHHHHHHhhccccccceeeeccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 016029 330 DQGWMIMLTSFLGLSNGYLTVCVLTAAPKGYKGPEQNALGNLLVLFLLGGIFAGATLDWLWLIG 393 (396)
Q Consensus 330 ~d~~~~i~~~lfgltnGyl~t~~mi~~p~~v~~~e~e~ag~~~~~~l~~Gl~~Gs~~s~~~~~~ 393 (396)
+-+..++.=++.|+..|-....+..+..+..++++|...+.+...+...|...+...+......
T Consensus 125 ~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~ 188 (491)
T 4gc0_A 125 YVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARS 188 (491)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccc
Confidence 3344556688999999988888888888888999999999999999999999999988766543
No 14
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=71.73 E-value=4.2 Score=39.04 Aligned_cols=74 Identities=7% Similarity=0.037 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHHHHHhhhhhhhccchhhcc-ccC
Q 016029 46 ALITLAILAYHEAKIDTRRRIIFGYILFFASSLLVLVLDLATSGKGGLGTFIGICVISGAFGVADANVQGGMVGDL-SFM 124 (396)
Q Consensus 46 ~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~i~~~~~~~i~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la-~~~ 124 (396)
+.+..++..++.+|+..+..+..+..+..+..+.+ ...+ + .+..++...+.+.+.+..+.....+. -.+
T Consensus 272 ~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~---~~~~----~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 341 (417)
T 2cfq_A 272 NASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGS---SFAT----S---ALEVVILKTLHMFEVPFLLVGCFKYITSQF 341 (417)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH---TTCC----S---HHHHHHHTTHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHH---HHhc----c---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 34445566677788766555555554444433222 1211 1 12222233334444555555555554 446
Q ss_pred CHHHH
Q 016029 125 TSELI 129 (396)
Q Consensus 125 p~~~~ 129 (396)
|++..
T Consensus 342 p~~~~ 346 (417)
T 2cfq_A 342 EVRFS 346 (417)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 77654
Done!