Query 016030
Match_columns 396
No_of_seqs 154 out of 1478
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 03:09:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016030.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016030hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03388 ascorbase L-ascorbat 100.0 1.7E-74 3.7E-79 589.0 40.4 376 10-385 164-540 (541)
2 PLN02191 L-ascorbate oxidase 100.0 6E-73 1.3E-77 578.2 41.8 383 9-392 185-570 (574)
3 PLN02604 oxidoreductase 100.0 5.8E-71 1.3E-75 564.7 41.4 375 10-386 187-564 (566)
4 PLN00044 multi-copper oxidase- 100.0 1.7E-67 3.6E-72 534.6 36.9 347 8-388 189-559 (596)
5 PLN02792 oxidoreductase 100.0 2.3E-67 5E-72 531.3 37.3 337 8-388 176-528 (536)
6 PLN02991 oxidoreductase 100.0 2.2E-66 4.7E-71 523.6 37.7 332 10-386 189-533 (543)
7 PLN02354 copper ion binding / 100.0 8.6E-66 1.9E-70 522.2 36.7 338 9-388 187-543 (552)
8 PLN02835 oxidoreductase 100.0 1.5E-65 3.3E-70 519.7 37.5 332 9-387 189-535 (539)
9 PLN02168 copper ion binding / 100.0 3.4E-65 7.5E-70 515.7 37.3 333 9-385 186-543 (545)
10 TIGR03389 laccase laccase, pla 100.0 5.1E-65 1.1E-69 519.6 38.6 349 8-383 163-539 (539)
11 TIGR03390 ascorbOXfungal L-asc 100.0 2.6E-60 5.6E-65 483.5 36.2 335 10-370 170-533 (538)
12 KOG1263 Multicopper oxidases [ 100.0 4.1E-60 8.8E-65 475.7 36.9 348 7-389 188-561 (563)
13 TIGR01480 copper_res_A copper- 100.0 1.4E-44 3.1E-49 368.2 30.8 250 49-368 260-586 (587)
14 PRK10883 FtsI repressor; Provi 100.0 3.7E-43 8.1E-48 352.1 26.1 232 50-369 221-468 (471)
15 PRK10965 multicopper oxidase; 100.0 9.1E-43 2E-47 352.3 28.9 241 50-368 224-522 (523)
16 COG2132 SufI Putative multicop 100.0 2.9E-35 6.2E-40 295.9 27.6 248 51-369 201-449 (451)
17 PF07731 Cu-oxidase_2: Multico 100.0 9.9E-32 2.2E-36 227.6 12.7 108 258-371 30-137 (138)
18 PF00394 Cu-oxidase: Multicopp 100.0 1.4E-28 3E-33 213.2 15.4 123 8-145 33-158 (159)
19 TIGR02376 Cu_nitrite_red nitri 99.6 6.9E-16 1.5E-20 147.4 8.3 93 50-145 203-297 (311)
20 TIGR02376 Cu_nitrite_red nitri 99.4 3.9E-11 8.4E-16 114.8 22.9 89 265-369 205-296 (311)
21 PLN02604 oxidoreductase 99.0 2.4E-09 5.3E-14 110.6 13.1 89 263-370 56-144 (566)
22 PF07732 Cu-oxidase_3: Multico 98.8 4.6E-08 9.9E-13 80.0 8.9 91 261-371 25-116 (117)
23 TIGR03389 laccase laccase, pla 98.6 6.1E-06 1.3E-10 85.2 21.0 76 263-354 188-264 (539)
24 TIGR03388 ascorbase L-ascorbat 98.5 4.8E-07 1.1E-11 93.3 10.5 90 262-370 32-121 (541)
25 PLN02835 oxidoreductase 98.4 2.4E-05 5.2E-10 80.5 19.4 73 263-351 203-276 (539)
26 PLN02792 oxidoreductase 98.4 3.7E-05 8E-10 78.9 20.2 73 263-351 194-267 (536)
27 PF00394 Cu-oxidase: Multicopp 98.2 6.2E-06 1.3E-10 71.3 9.1 90 262-367 60-154 (159)
28 PLN02354 copper ion binding / 98.2 0.00013 2.8E-09 75.3 19.6 75 263-353 208-283 (552)
29 TIGR03390 ascorbOXfungal L-asc 98.2 0.00012 2.6E-09 75.5 18.8 68 262-345 198-266 (538)
30 PLN02991 oxidoreductase 98.1 0.00018 3.8E-09 74.0 18.1 72 263-350 203-276 (543)
31 PLN02168 copper ion binding / 98.1 0.00011 2.4E-09 75.5 16.4 66 263-344 202-267 (545)
32 TIGR03095 rusti_cyanin rusticy 98.1 2.7E-05 5.9E-10 66.2 9.5 89 262-368 52-147 (148)
33 PLN02191 L-ascorbate oxidase 98.1 2.9E-05 6.2E-10 80.6 11.3 89 262-369 54-142 (574)
34 PRK10883 FtsI repressor; Provi 98.0 0.00068 1.5E-08 68.8 20.0 74 263-352 221-295 (471)
35 TIGR01480 copper_res_A copper- 97.8 0.00012 2.6E-09 75.9 10.7 87 262-370 76-162 (587)
36 PF07731 Cu-oxidase_2: Multico 97.7 0.00054 1.2E-08 57.4 11.0 73 49-124 34-117 (138)
37 PRK10965 multicopper oxidase; 97.6 0.00023 4.9E-09 73.1 8.6 67 49-116 426-495 (523)
38 TIGR02656 cyanin_plasto plasto 97.6 0.00039 8.5E-09 55.0 8.0 81 263-368 18-98 (99)
39 PLN00044 multi-copper oxidase- 97.5 0.00052 1.1E-08 71.2 9.3 89 262-371 60-149 (596)
40 TIGR03096 nitroso_cyanin nitro 97.4 0.00083 1.8E-08 55.6 8.2 60 263-355 62-121 (135)
41 PF13473 Cupredoxin_1: Cupredo 97.0 0.004 8.6E-08 49.6 7.8 68 263-364 36-103 (104)
42 PRK02888 nitrous-oxide reducta 96.5 0.011 2.3E-07 61.0 9.0 78 263-370 556-634 (635)
43 KOG1263 Multicopper oxidases [ 96.5 0.013 2.8E-07 60.4 9.4 89 262-371 59-148 (563)
44 PF00127 Copper-bind: Copper b 96.5 0.033 7.2E-07 43.9 9.8 82 262-368 17-98 (99)
45 COG2132 SufI Putative multicop 96.2 0.32 6.9E-06 49.3 17.5 72 267-354 204-275 (451)
46 PRK02710 plastocyanin; Provisi 95.9 0.045 9.8E-07 44.7 8.0 71 263-368 48-118 (119)
47 COG4454 Uncharacterized copper 95.2 0.06 1.3E-06 45.4 6.3 93 264-369 65-157 (158)
48 TIGR03096 nitroso_cyanin nitro 95.2 0.091 2E-06 43.6 7.3 63 43-124 55-117 (135)
49 PF13473 Cupredoxin_1: Cupredo 94.1 0.16 3.4E-06 40.3 6.1 61 45-124 31-91 (104)
50 TIGR02375 pseudoazurin pseudoa 93.7 0.78 1.7E-05 37.2 9.4 35 332-370 54-88 (116)
51 PF00116 COX2: Cytochrome C ox 92.4 1.3 2.9E-05 36.1 9.2 63 261-357 45-107 (120)
52 PF07732 Cu-oxidase_3: Multico 91.9 0.059 1.3E-06 43.9 0.6 76 48-129 25-101 (117)
53 PF06525 SoxE: Sulfocyanin (So 91.9 1.8 4E-05 38.2 9.9 98 260-370 84-187 (196)
54 TIGR03094 sulfo_cyanin sulfocy 91.0 3.4 7.3E-05 36.0 10.3 98 260-370 83-186 (195)
55 TIGR03095 rusti_cyanin rusticy 90.7 1.2 2.7E-05 37.7 7.5 72 49-125 52-131 (148)
56 TIGR03102 halo_cynanin halocya 87.7 4.6 9.9E-05 32.7 8.4 73 263-369 43-115 (115)
57 TIGR02866 CoxB cytochrome c ox 87.4 3.8 8.3E-05 36.6 8.6 73 262-368 117-190 (201)
58 TIGR02656 cyanin_plasto plasto 86.9 2 4.4E-05 33.6 5.9 67 47-124 15-83 (99)
59 TIGR02657 amicyanin amicyanin. 85.8 5.8 0.00012 29.9 7.7 71 263-368 12-82 (83)
60 PF14344 DUF4397: Domain of un 85.0 19 0.0004 29.0 11.7 39 78-116 44-84 (122)
61 PF12690 BsuPI: Intracellular 83.1 5.2 0.00011 30.2 6.3 65 60-125 5-82 (82)
62 PF06525 SoxE: Sulfocyanin (So 82.7 5.7 0.00012 35.1 7.2 74 49-124 86-168 (196)
63 COG4454 Uncharacterized copper 80.8 3.3 7.1E-05 35.1 4.8 74 47-125 61-140 (158)
64 TIGR01433 CyoA cytochrome o ub 76.9 6.3 0.00014 36.0 5.9 59 263-355 140-198 (226)
65 TIGR02695 azurin azurin. Azuri 74.8 13 0.00027 30.5 6.4 74 45-121 12-106 (125)
66 PF11142 DUF2917: Protein of u 73.9 11 0.00023 27.0 5.2 47 51-109 2-48 (63)
67 PF04151 PPC: Bacterial pre-pe 73.1 11 0.00023 27.2 5.3 65 49-126 5-69 (70)
68 TIGR01432 QOXA cytochrome aa3 71.5 9.6 0.00021 34.5 5.7 58 263-354 131-188 (217)
69 PRK02888 nitrous-oxide reducta 67.8 19 0.00041 37.8 7.5 60 47-124 553-614 (635)
70 COG1622 CyoA Heme/copper-type 67.6 23 0.00049 32.8 7.3 72 262-367 137-209 (247)
71 PF07705 CARDB: CARDB; InterP 66.0 55 0.0012 24.7 10.6 69 52-129 14-85 (101)
72 PF04379 DUF525: Protein of un 65.7 23 0.0005 27.3 5.9 49 58-109 15-67 (90)
73 MTH00139 COX2 cytochrome c oxi 65.6 24 0.00052 32.2 7.0 62 260-355 138-199 (226)
74 PF07691 PA14: PA14 domain; I 63.9 58 0.0013 26.7 8.7 62 50-116 53-121 (145)
75 smart00758 PA14 domain in bact 63.7 54 0.0012 26.7 8.4 62 51-117 52-114 (136)
76 PRK02710 plastocyanin; Provisi 63.6 25 0.00054 28.5 6.1 58 47-123 45-102 (119)
77 MTH00038 COX2 cytochrome c oxi 60.8 31 0.00067 31.5 6.8 67 261-361 139-205 (229)
78 PTZ00047 cytochrome c oxidase 60.7 43 0.00094 28.8 7.2 60 262-355 73-132 (162)
79 MTH00129 COX2 cytochrome c oxi 60.0 31 0.00066 31.6 6.7 62 261-356 139-200 (230)
80 MTH00023 COX2 cytochrome c oxi 59.6 34 0.00073 31.6 6.9 72 261-366 150-222 (240)
81 MTH00140 COX2 cytochrome c oxi 58.9 40 0.00087 30.8 7.2 73 261-367 139-212 (228)
82 COG3794 PetE Plastocyanin [Ene 58.7 56 0.0012 27.0 7.2 33 333-369 95-127 (128)
83 PF00127 Copper-bind: Copper b 56.7 13 0.00028 29.0 3.2 64 46-124 14-83 (99)
84 PF01835 A2M_N: MG2 domain; I 56.7 87 0.0019 23.9 8.8 71 53-128 11-86 (99)
85 MTH00154 COX2 cytochrome c oxi 55.4 40 0.00086 30.8 6.6 61 261-355 139-199 (227)
86 MTH00117 COX2 cytochrome c oxi 53.8 42 0.00091 30.6 6.5 72 261-366 139-211 (227)
87 MTH00047 COX2 cytochrome c oxi 51.9 74 0.0016 28.3 7.5 60 262-355 116-175 (194)
88 MTH00098 COX2 cytochrome c oxi 49.1 71 0.0015 29.2 7.2 72 261-366 139-211 (227)
89 PF11614 FixG_C: IG-like fold 49.0 59 0.0013 26.0 6.0 47 58-113 34-82 (118)
90 PRK10525 cytochrome o ubiquino 49.0 34 0.00074 32.9 5.2 59 263-355 152-210 (315)
91 MTH00051 COX2 cytochrome c oxi 48.5 58 0.0013 29.9 6.5 62 261-356 143-204 (234)
92 MTH00168 COX2 cytochrome c oxi 48.2 57 0.0012 29.7 6.4 61 261-355 139-199 (225)
93 MTH00080 COX2 cytochrome c oxi 48.0 60 0.0013 29.7 6.5 61 261-355 142-202 (231)
94 MTH00185 COX2 cytochrome c oxi 47.1 88 0.0019 28.6 7.5 72 261-366 139-211 (230)
95 MTH00027 COX2 cytochrome c oxi 45.6 68 0.0015 30.0 6.6 72 261-366 173-245 (262)
96 PF00116 COX2: Cytochrome C ox 44.3 1.7E+02 0.0037 23.7 8.7 57 49-125 46-102 (120)
97 PRK09918 putative fimbrial cha 44.2 60 0.0013 29.6 6.0 21 47-67 74-94 (230)
98 PF14874 PapD-like: Flagellar- 43.3 1.5E+02 0.0032 22.7 9.0 65 52-124 15-83 (102)
99 MTH00008 COX2 cytochrome c oxi 43.2 1E+02 0.0022 28.1 7.3 72 261-366 139-211 (228)
100 MTH00076 COX2 cytochrome c oxi 42.2 81 0.0018 28.8 6.5 72 261-366 139-211 (228)
101 PRK15195 fimbrial chaperone pr 39.5 48 0.001 30.3 4.5 34 47-80 76-115 (229)
102 COG3354 FlaG Putative archaeal 37.8 1.3E+02 0.0029 25.2 6.3 64 57-126 70-141 (154)
103 PF03459 TOBE: TOBE domain; I 37.1 31 0.00067 24.1 2.3 49 61-114 12-60 (64)
104 PF10633 NPCBM_assoc: NPCBM-as 35.6 1.7E+02 0.0038 21.2 8.3 66 53-127 1-75 (78)
105 PF14392 zf-CCHC_4: Zinc knuck 35.0 55 0.0012 21.8 3.1 41 320-360 4-45 (49)
106 PRK15249 fimbrial chaperone pr 34.5 58 0.0013 30.2 4.3 22 46-67 83-104 (253)
107 KOG4078 Putative mitochondrial 34.2 26 0.00056 29.1 1.6 37 53-91 120-156 (173)
108 PF10636 hemP: Hemin uptake pr 34.1 28 0.00061 22.1 1.4 19 49-67 14-32 (38)
109 PRK09926 putative chaperone pr 34.0 56 0.0012 30.2 4.1 23 46-68 79-101 (246)
110 PF04225 OapA: Opacity-associa 33.5 92 0.002 23.6 4.5 40 52-91 42-82 (85)
111 PRK15299 fimbrial chaperone pr 33.1 62 0.0014 29.5 4.2 22 47-68 75-96 (227)
112 TIGR02375 pseudoazurin pseudoa 32.9 78 0.0017 25.6 4.3 20 47-66 13-32 (116)
113 PF14734 DUF4469: Domain of un 31.8 1.4E+02 0.0031 23.5 5.5 47 81-128 40-86 (102)
114 PF10989 DUF2808: Protein of u 31.6 54 0.0012 27.6 3.3 26 330-355 99-128 (146)
115 PF07233 DUF1425: Protein of u 31.3 1.6E+02 0.0034 22.7 5.6 46 80-125 45-92 (94)
116 PRK11385 putativi pili assembl 30.1 97 0.0021 28.5 4.9 21 47-67 83-103 (236)
117 PRK15208 long polar fimbrial c 29.2 78 0.0017 28.9 4.1 22 47-68 72-93 (228)
118 PF05938 Self-incomp_S1: Plant 28.9 1.1E+02 0.0023 24.1 4.5 30 327-356 28-57 (110)
119 PF15415 DUF4622: Protein of u 28.4 1.4E+02 0.0031 27.3 5.4 41 51-93 96-138 (310)
120 PF08194 DIM: DIM protein; In 28.4 46 0.00099 20.9 1.7 18 6-24 18-35 (36)
121 PRK15295 fimbrial assembly cha 27.8 1.1E+02 0.0023 28.0 4.8 22 47-68 71-92 (226)
122 PF14016 DUF4232: Protein of u 27.5 2.2E+02 0.0048 23.1 6.3 60 54-115 16-82 (131)
123 PRK10183 hypothetical protein; 26.8 46 0.00099 23.1 1.6 19 49-67 32-50 (56)
124 TIGR02745 ccoG_rdxA_fixG cytoc 26.3 2E+02 0.0044 29.0 6.8 48 58-113 349-397 (434)
125 PF08400 phage_tail_N: Prophag 26.1 1.1E+02 0.0024 25.5 4.1 11 12-22 6-16 (134)
126 PF00345 PapD_N: Pili and flag 26.0 1.3E+02 0.0028 24.1 4.5 34 47-80 54-92 (122)
127 PF03633 Glyco_hydro_65C: Glyc 25.7 2.1E+02 0.0046 19.2 5.5 31 57-89 8-38 (54)
128 PRK05461 apaG CO2+/MG2+ efflux 25.4 2.5E+02 0.0053 23.1 6.0 49 58-109 32-84 (127)
129 PRK15254 fimbrial chaperone pr 24.7 1.4E+02 0.003 27.5 4.9 20 47-66 67-86 (239)
130 PRK15192 fimbrial chaperone Bc 24.6 1.3E+02 0.0029 27.6 4.7 22 47-68 79-100 (234)
131 PF14321 DUF4382: Domain of un 24.6 4E+02 0.0087 21.9 7.5 60 49-115 61-123 (139)
132 PF08685 GON: GON domain; Int 24.4 1.5E+02 0.0033 26.5 4.8 72 6-92 14-114 (201)
133 COG3121 FimC P pilus assembly 23.9 1.4E+02 0.003 27.4 4.8 22 47-68 79-100 (235)
134 TIGR00638 Mop molybdenum-pteri 23.1 1.1E+02 0.0024 21.5 3.2 46 64-114 17-62 (69)
135 COG1470 Predicted membrane pro 22.7 8.3E+02 0.018 25.0 11.0 75 48-129 388-469 (513)
136 PF13464 DUF4115: Domain of un 22.6 2.5E+02 0.0055 20.4 5.2 10 52-61 25-34 (77)
137 PF08329 ChitinaseA_N: Chitina 21.5 1.7E+02 0.0036 24.4 4.3 44 49-96 75-120 (133)
138 PF02767 DNA_pol3_beta_2: DNA 21.4 4E+02 0.0086 21.0 6.6 24 69-92 27-50 (116)
139 COG3241 Azurin [Energy product 21.3 82 0.0018 25.7 2.3 39 85-123 89-132 (151)
140 PRK15211 fimbrial chaperone pr 20.7 1.5E+02 0.0034 27.0 4.4 22 47-68 73-94 (229)
141 PF10528 PA14_2: GLEYA domain; 20.5 2E+02 0.0043 23.1 4.5 29 49-77 62-92 (113)
142 cd09030 DUF1425 Putative perip 20.4 2.3E+02 0.005 21.9 4.8 45 80-124 53-99 (101)
143 PRK10579 hypothetical protein; 20.2 4.1E+02 0.0089 20.6 5.9 68 50-126 16-84 (94)
No 1
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=100.00 E-value=1.7e-74 Score=588.96 Aligned_cols=376 Identities=72% Similarity=1.236 Sum_probs=285.1
Q ss_pred CCceEEEccCCCCCCccccccCCCCcccccccCCCCCCceEEEEcCCCeEEEEEEecCccceEEEEEeCceeEEEEeCCc
Q 016030 10 GHYVGLVSHRGQFNCSLAAHFSNGSAEQCKLRGNEQCAPQILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGN 89 (396)
Q Consensus 10 ~~~s~LiNG~g~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~v~~G~~yRlRlINa~~~~~~~~sId~h~l~VIa~DG~ 89 (396)
..+++||||||+++|.............|....+..+.+.+|+|++|++|||||||+|+.+.+.|+||+|+|+|||+||+
T Consensus 164 ~~d~~liNG~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~RlRliNa~~~~~~~~~id~h~~~VIa~DG~ 243 (541)
T TIGR03388 164 EPQSLLINGRGQFNCSLAAKFSSTNLPQCNLKGNEQCAPQILHVEPGKTYRLRIASTTALAALNFAIEGHKLTVVEADGN 243 (541)
T ss_pred CCcceEECCCCCCCCccccccCccccchhhccCCCCCCceEEEECCCCEEEEEEEcccccceEEEEECCCEEEEEEeCCE
Confidence 34899999999999975433222233456544455667778999999999999999999999999999999999999999
Q ss_pred eeeeeEeceEEecCCceEEEEEeeCCCCCcceEEEEEecCCCCCCCCcceEEEEccCCCCCCCCCCCCCCCCCCCCcccc
Q 016030 90 YVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAGVRGRKPATPPALTLLNYHPTSASKIPLSPPPITPRWDDYDHSK 169 (396)
Q Consensus 90 ~v~P~~v~~l~i~~GqRyDVlv~~~~~~~~~y~ir~~~~~~~~~~~~~~~il~y~~~~~~~~p~~~~~~~~~~~~~~~~~ 169 (396)
+++|+++++|.|++||||||||++++.++++||||+...+.......++|||+|.+......+....+..+.|.+.....
T Consensus 244 ~v~P~~v~~l~i~~GqR~dvlv~~~~~~~~~y~ira~~~~~~~~~~~~~aiL~Y~~~~~~~~p~~~~~~~p~~~~~~~~~ 323 (541)
T TIGR03388 244 YVEPFTVKDIDIYSGETYSVLLTTDQDPSRNYWISVGVRGRKPNTPPGLTVLNYYPNSPSRLPPTPPPVTPAWDDFDRSK 323 (541)
T ss_pred ecccceeCeEEecCCCEEEEEEeCCCCCCCcEEEEEecccCCCCCccEEEEEEECCCCCCCCCCCCCCCCCCccccchhh
Confidence 99999999999999999999999998776699999987654334456789999976544332322223334444432222
Q ss_pred cccccccccCCCCCCCCccceEEEEeecccccCCeEEEEEcCccCcCCCCCchhhhhccCCCCCCCCCCCCCCCCCCCCC
Q 016030 170 SFSNKIFALMGSPKPPTNFHRRLTLLNTQNTINGFTKWAINNVSLTLPPTPYLGSIKYGLKDAFDQNGPPENFSNEYDVM 249 (396)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~iN~~s~~~p~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (396)
.+....+.....+.++...++++.+.......++...|.+||.+|..|..|+|.+...++...|+...++..++..++..
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~s~~~p~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (541)
T TIGR03388 324 AFSLAIKAAMGSPKPPETSDRRIVLLNTQNKINGYTKWAINNVSLTLPHTPYLGSLKYNLLNAFDQKPPPENYPRDYDIF 403 (541)
T ss_pred ccchhhhccccCCCCCCCCCcEEEEeccCcccCceEEEEECcccCCCCCccHHHHHhhcCCccccCCCCccccccccccc
Confidence 12212221111223334456666554443334466789999999998999999888776665665443444554444433
Q ss_pred CCCCCCCcccccceEEeecCCEEEEEEecCCCCCCCCCCCCCeeecCCceEEEeecCCCCCcc-cccccCCCCCCccceE
Q 016030 250 KPPVNANTTLGSGVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKE-DEKKFNLKNPPLKNTA 328 (396)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~g~~v~~vi~N~~~~~~~~~~~HP~HLHG~~F~Vl~~g~g~~~~~-~~~~~n~~~p~~rDTv 328 (396)
.+..+...+.++.++.++.|++|||+|+|.+.+.......||||||||+||||++|.|.|+.. +...+|+.||++|||+
T Consensus 404 ~~~~~~~~~~~~~~~~~~~g~~Vdivi~n~~~~~~~~~~~HP~HLHGh~F~vlg~g~g~~~~~~~~~~~n~~nP~~RDTv 483 (541)
T TIGR03388 404 KPPPNPNTTTGNGIYRLKFNTTVDVILQNANTLNGNNSETHPWHLHGHDFWVLGYGEGKFRPGVDEKSYNLKNPPLRNTV 483 (541)
T ss_pred CCCcccccccCceEEEecCCCeEEEEEECCccccCCCCCCCcEEecCCceEEEeeccCCCCcccCcccccCCCCCEeceE
Confidence 333333455577889999999999999997532111246899999999999999999998753 3457899999999999
Q ss_pred EeCCCcEEEEEEEcCCCeeeEEeecchhhhhcCcEEEEeeccccccCCCCccccccc
Q 016030 329 VIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALGVETVGNIPNQALACGL 385 (396)
Q Consensus 329 ~vp~~g~~~irf~adnpG~w~~HCHi~~H~~~GM~~~~~~~~~~~~~~P~~~~~c~~ 385 (396)
.|+++||++|||+|||||.|+|||||+||++.||+++|+|++++++++|++++.||.
T Consensus 484 ~vp~~gwvvIRF~adNPG~W~~HCHi~~H~~~GM~~~~~e~~~~~~~~P~~~~~C~~ 540 (541)
T TIGR03388 484 VIFPYGWTALRFVADNPGVWAFHCHIEPHLHMGMGVVFAEGVEKVGKLPKEALGCGL 540 (541)
T ss_pred EeCCCceEEEEEECCCCeEeeeeccchhhhhcccEEEEeccccccCCCCccccCCCC
Confidence 999999999999999999999999999999999999999999999999999999983
No 2
>PLN02191 L-ascorbate oxidase
Probab=100.00 E-value=6e-73 Score=578.24 Aligned_cols=383 Identities=65% Similarity=1.157 Sum_probs=276.8
Q ss_pred CCCceEEEccCCCCCCccccccCCC-CcccccccCCCCCCceEEEEcCCCeEEEEEEecCccceEEEEEeCceeEEEEeC
Q 016030 9 QGHYVGLVSHRGQFNCSLAAHFSNG-SAEQCKLRGNEQCAPQILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEAD 87 (396)
Q Consensus 9 ~~~~s~LiNG~g~~~c~~~~~~~~~-~~~~c~~~~~~~~~~~~~~v~~G~~yRlRlINa~~~~~~~~sId~h~l~VIa~D 87 (396)
...+++||||+|+++|+........ ....|....+.++.+.+|+|++||+|||||||+|+.+.+.|+||||+|+|||+|
T Consensus 185 ~~~d~~liNG~g~~~~~~~~~~~~~~~~~~~~~~~n~~~~p~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~tVIa~D 264 (574)
T PLN02191 185 GEAQSILINGRGQFNCSLAAQFSNGTELPMCTFKEGDQCAPQTLRVEPNKTYRIRLASTTALASLNLAVQGHKLVVVEAD 264 (574)
T ss_pred CCCCceEECCCCCCCCcccccccCCcccccceeccCCCCCceEEEEcCCCEEEEEEEecCCceeEEEEECCCeEEEEEcC
Confidence 3468999999999999643221111 111354333445666789999999999999999999999999999999999999
Q ss_pred CceeeeeEeceEEecCCceEEEEEeeCCCCCcceEEEEEecCCCCCCCCcceEEEEccCCCCCCCCCCCCCCCCCCCCcc
Q 016030 88 GNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAGVRGRKPATPPALTLLNYHPTSASKIPLSPPPITPRWDDYDH 167 (396)
Q Consensus 88 G~~v~P~~v~~l~i~~GqRyDVlv~~~~~~~~~y~ir~~~~~~~~~~~~~~~il~y~~~~~~~~p~~~~~~~~~~~~~~~ 167 (396)
|++++|+++++|.|++||||||||+++|.++++||||+.....+.......|||+|.+...+..+....+..+.+.+...
T Consensus 265 G~~v~P~~v~~l~i~~GqRydVlV~a~~~~~~~y~ira~~~~~~~~~~~~~ail~Y~~~~~~~~p~~~~~~~p~~~~~~~ 344 (574)
T PLN02191 265 GNYITPFTTDDIDIYSGESYSVLLTTDQDPSQNYYISVGVRGRKPNTTQALTILNYVTAPASKLPSSPPPVTPRWDDFER 344 (574)
T ss_pred CeeccceEeeeEEEcCCCeEEEEEECCCCCCCCEEEEEEccccCCCCCCceEEEEECCCCCCCCCCCCCCCCCcccccch
Confidence 99999999999999999999999999997766999999766533333346799999765443323222222333433322
Q ss_pred cccccccccccCCCCCCCC-ccceEEEEeecccccCCeEEEEEcCccCcCCCCCchhhhhccCCCCCCCCCCCCCCCCCC
Q 016030 168 SKSFSNKIFALMGSPKPPT-NFHRRLTLLNTQNTINGFTKWAINNVSLTLPPTPYLGSIKYGLKDAFDQNGPPENFSNEY 246 (396)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~g~~~~~iN~~s~~~p~~p~l~~~~~~~~~~~~~~~~~~~~~~~~ 246 (396)
...+....+.....+.++. ..++.+.+ .......+..+|++||.+|..|..|+|.+...+....|+...++..++.++
T Consensus 345 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~-~~~~~~~~~~~~~~n~~s~~~p~~P~L~~~~~~~~~~~~~~~~~~~~~~~~ 423 (574)
T PLN02191 345 SKNFSKKIFSAMGSPSPPKKYRKRLILL-NTQNLIDGYTKWAINNVSLVTPATPYLGSVKYNLKLGFNRKSPPRSYRMDY 423 (574)
T ss_pred hhcccccccccccCCCCCCcccceEEEe-cccceeCCeEEEEECcccCcCCCcchHHHHhhccCcccccCCCcccccccc
Confidence 2112211111111122222 22344433 222223456789999999999999999988776666665544443333333
Q ss_pred CCCCCCCCCCcccccceEEeecCCEEEEEEecCCCCCCCCCCCCCeeecCCceEEEeecCCCCCcc-cccccCCCCCCcc
Q 016030 247 DVMKPPVNANTTLGSGVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKE-DEKKFNLKNPPLK 325 (396)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~g~~v~~vi~N~~~~~~~~~~~HP~HLHG~~F~Vl~~g~g~~~~~-~~~~~n~~~p~~r 325 (396)
+...+......+.+..++.++.|++|||+|+|.+.........||||||||+||||++|.|.|+++ +...+|+.||++|
T Consensus 424 ~~~~~~~~~~~~~~~~v~~~~~~~~Vdivi~n~~~~~~~~~~~HP~HLHGh~F~Vlg~G~g~~~~~~~~~~~nl~nP~rR 503 (574)
T PLN02191 424 DIMNPPPFPNTTTGNGIYVFPFNVTVDVIIQNANVLKGVVSEIHPWHLHGHDFWVLGYGDGKFKPGIDEKTYNLKNPPLR 503 (574)
T ss_pred cccCCCccccccccceeEEecCCCEEEEEEECCCcccCCCCCCCCEEeCCCCeEEEEecCCCCCcccCcccccCCCCCcC
Confidence 322111111223456788999999999999997421001246899999999999999999999753 3346899999999
Q ss_pred ceEEeCCCcEEEEEEEcCCCeeeEEeecchhhhhcCcEEEEeeccccccCCCCccccccccccccCC
Q 016030 326 NTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALGVETVGNIPNQALACGLTGKRFMN 392 (396)
Q Consensus 326 DTv~vp~~g~~~irf~adnpG~w~~HCHi~~H~~~GM~~~~~~~~~~~~~~P~~~~~c~~~~~~~~~ 392 (396)
||+.|+++||++|||++||||.|+|||||+||+..||+++|+|++++++++|++++.|+......|.
T Consensus 504 DTv~vp~~Gw~vIRf~aDNPG~Wl~HCHi~~Hl~~Gm~~~~~e~~~~~~~~p~~~~~C~~~~~~~~~ 570 (574)
T PLN02191 504 NTAILYPYGWTAIRFVTDNPGVWFFHCHIEPHLHMGMGVVFAEGLNRIGKIPDEALGCGLTKQFLMN 570 (574)
T ss_pred CeEEeCCCCEEEEEEECCCCEEEEEecCchhhhhcCCEEEEecChhhccCCCcchhhhhcccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999866554443
No 3
>PLN02604 oxidoreductase
Probab=100.00 E-value=5.8e-71 Score=564.66 Aligned_cols=375 Identities=51% Similarity=0.932 Sum_probs=269.2
Q ss_pred CCceEEEccCCCCCCccccccCCCCcccccccCCCCCCceEEEEcCCCeEEEEEEecCccceEEEEEeCceeEEEEeCCc
Q 016030 10 GHYVGLVSHRGQFNCSLAAHFSNGSAEQCKLRGNEQCAPQILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGN 89 (396)
Q Consensus 10 ~~~s~LiNG~g~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~v~~G~~yRlRlINa~~~~~~~~sId~h~l~VIa~DG~ 89 (396)
..+++||||+|+++|+.... .......|.. .+..+.+++++|++||+|||||||+|+.+.++|+||||+|+|||+||+
T Consensus 187 ~~d~~liNG~G~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~v~~g~~~RlRlINa~~~~~~~~sidgH~~~VIa~DG~ 264 (566)
T PLN02604 187 EPQSLLIQGKGRYNCSLVSS-PYLKAGVCNA-TNPECSPYVLTVVPGKTYRLRISSLTALSALSFQIEGHNMTVVEADGH 264 (566)
T ss_pred CCCceEEcCCCCCCCccccC-cccccccccc-CCCCCCceEEEecCCCEEEEEEEeccccceEEEEECCCEEEEEEeCCE
Confidence 35899999999999974210 0000112331 123456678999999999999999999999999999999999999999
Q ss_pred eeeeeEeceEEecCCceEEEEEeeCCCCCcceEEEEEecCCCCCCCCcceEEEEccCCCCCCCCCCCCCCCCCCCCcccc
Q 016030 90 YVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAGVRGRKPATPPALTLLNYHPTSASKIPLSPPPITPRWDDYDHSK 169 (396)
Q Consensus 90 ~v~P~~v~~l~i~~GqRyDVlv~~~~~~~~~y~ir~~~~~~~~~~~~~~~il~y~~~~~~~~p~~~~~~~~~~~~~~~~~ 169 (396)
+++|+++++|.|++||||||||++++.++++||||+.....+.+...++|||+|.+......++..++..+.|.+.....
T Consensus 265 ~v~P~~v~~l~l~~GqRydvlV~~~~~~~~~y~ira~~~~~~~~~~~~~aIL~Y~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (566)
T PLN02604 265 YVEPFVVKNLFIYSGETYSVLVKADQDPSRNYWVTTSVVSRNNTTPPGLAIFNYYPNHPRRSPPTVPPSGPLWNDVEPRL 344 (566)
T ss_pred ecccceeeeEEEccCCeEEEEEECCCCCCCCEEEEEecccCCCCCcceeEEEEECCCCCCCCCCCCCCCCCcccccchhh
Confidence 99999999999999999999999999776699999875544334567899999975432111111122222333322111
Q ss_pred cccccccccCC-CCCCCCccceEEEEeecccccCCeEEEEEcCccCcCCCCCchhhhhccCCCCCCCCCCCCCCC-CCCC
Q 016030 170 SFSNKIFALMG-SPKPPTNFHRRLTLLNTQNTINGFTKWAINNVSLTLPPTPYLGSIKYGLKDAFDQNGPPENFS-NEYD 247 (396)
Q Consensus 170 ~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~g~~~~~iN~~s~~~p~~p~l~~~~~~~~~~~~~~~~~~~~~-~~~~ 247 (396)
........... ...++...++++.+.......++...|+||+.+|..|..|+|.+......+.|+...++..+. ..++
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~w~in~~~~~~p~~p~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (566)
T PLN02604 345 NQSLAIKARHGYIHPPPLTSDRVIVLLNTQNEVNGYRRWSVNNVSFNLPHTPYLIALKENLTGAFDQTPPPEGYDFANYD 424 (566)
T ss_pred cchhcccccccCcCCCCCCCCeEEEEeccccccCCeEEEEECcccCCCCCCchhHhhhhcCCCcccCCCCCccccccccc
Confidence 11100000000 011233445666554333333455789999999998999999887765555554332333232 1111
Q ss_pred CCCCCCCCCcccccceEEeecCCEEEEEEecCCCCCCCCCCCCCeeecCCceEEEeecCCCCCcc-cccccCCCCCCccc
Q 016030 248 VMKPPVNANTTLGSGVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKE-DEKKFNLKNPPLKN 326 (396)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~g~~v~~vi~N~~~~~~~~~~~HP~HLHG~~F~Vl~~g~g~~~~~-~~~~~n~~~p~~rD 326 (396)
......+.+...+..++.++.|++||++|+|.+.+.......||||||||+||||++|.|.|+.. +...+|+.||++||
T Consensus 425 ~~~~~~~~~~~~~~~v~~~~~~~~Vdivi~n~~~~~~~~~~~HP~HLHGH~F~Vlg~G~G~~~~~~~~~~~nl~nP~rRD 504 (566)
T PLN02604 425 IYAKPNNSNATSSDSIYRLQFNSTVDIILQNANTMNANNSETHPWHLHGHDFWVLGYGEGKFNMSSDPKKYNLVDPIMKN 504 (566)
T ss_pred ccCCccccccccCceEEEccCCCeEEEEEECCccccCCCCCCCCEEecCCceEEEEecCCCCCccccccccCCCCCCccc
Confidence 11111112234456788999999999999997532111346899999999999999999998754 34578999999999
Q ss_pred eEEeCCCcEEEEEEEcCCCeeeEEeecchhhhhcCcEEEEeeccccccCCCCcccccccc
Q 016030 327 TAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALGVETVGNIPNQALACGLT 386 (396)
Q Consensus 327 Tv~vp~~g~~~irf~adnpG~w~~HCHi~~H~~~GM~~~~~~~~~~~~~~P~~~~~c~~~ 386 (396)
|+.|+++||++|||+|||||.|+|||||+||+..||+++|+|++++++++|+.++.|+..
T Consensus 505 Tv~vp~~gwvvIRF~aDNPG~WlfHCHI~~Hl~~GM~~v~~e~~~~~~~~p~~~~~C~~~ 564 (566)
T PLN02604 505 TVPVHPYGWTALRFRADNPGVWAFHCHIESHFFMGMGVVFEEGIERVGKLPSSIMGCGES 564 (566)
T ss_pred eEEeCCCceEEEEEECCCCeEeeEeecchhHhhcCCEEEEeeChhhccCCCCCcCccccC
Confidence 999999999999999999999999999999999999999999999999999999999843
No 4
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=100.00 E-value=1.7e-67 Score=534.63 Aligned_cols=347 Identities=25% Similarity=0.428 Sum_probs=254.2
Q ss_pred CCCCceEEEccCCCCC--CccccccCCCCcccccccCCCCCCceEEEEcCCCeEEEEEEecCccceEEEEEeCceeEEEE
Q 016030 8 PQGHYVGLVSHRGQFN--CSLAAHFSNGSAEQCKLRGNEQCAPQILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVE 85 (396)
Q Consensus 8 ~~~~~s~LiNG~g~~~--c~~~~~~~~~~~~~c~~~~~~~~~~~~~~v~~G~~yRlRlINa~~~~~~~~sId~h~l~VIa 85 (396)
+...+++||||+|++. |+... ..+..++++|++||+|||||||+++.+.+.|+||||+|+|||
T Consensus 189 ~~~~d~~lING~g~~~~n~~~~~---------------~~~~~~~i~V~~Gk~yRlRiINaa~~~~~~fsIdgH~mtVIa 253 (596)
T PLN00044 189 LGAPDGVLINAFGPYQYNDSLVP---------------PGITYERINVDPGKTYRFRVHNVGVATSLNFRIQGHNLLLVE 253 (596)
T ss_pred CCCCCceEEcccCccccCCcccc---------------CCCccceEEECCCCEEEEEEEEccCCceEEEEECCCEEEEEE
Confidence 3446899999999863 33110 122335899999999999999999999999999999999999
Q ss_pred eCCceeeeeEeceEEecCCceEEEEEeeCCCCCcceEEEEEec--CC-CCCCCCcceEEEEccCCCCCCCCCCCCCCCC-
Q 016030 86 ADGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAGVR--GR-KPATPPALTLLNYHPTSASKIPLSPPPITPR- 161 (396)
Q Consensus 86 ~DG~~v~P~~v~~l~i~~GqRyDVlv~~~~~~~~~y~ir~~~~--~~-~~~~~~~~~il~y~~~~~~~~p~~~~~~~~~- 161 (396)
+||.+++|+.++.|.|++||||||||+++|.++++||||+..+ .. ..+...+.|||+|.++...... ..|..+.
T Consensus 254 ~DG~~v~P~~vd~i~I~~GQRydVLV~a~q~~~~~Y~i~a~~~~~~~~~~~~~~~~AIl~Y~~~~~~~~~--~~P~~p~~ 331 (596)
T PLN00044 254 AEGSYTSQQNYTNLDIHVGQSYSFLLTMDQNASTDYYVVASARFVDAAVVDKLTGVAILHYSNSQGPASG--PLPDAPDD 331 (596)
T ss_pred eCCcccCceeeeeEEEcCCceEEEEEECCCCCCCceEEEEecccccCccccCcceeEEEEECCCCCCCCC--CCCCCCcc
Confidence 9999999999999999999999999999997656899998643 11 1244567899999764321111 1233332
Q ss_pred CCCCcccccccccccccCC--CCCC-CCccceEEEEeecc---------cccCCeEEEEEcCccCcCCCCCchhhhhccC
Q 016030 162 WDDYDHSKSFSNKIFALMG--SPKP-PTNFHRRLTLLNTQ---------NTINGFTKWAINNVSLTLPPTPYLGSIKYGL 229 (396)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~i~~~~~~---------~~~~g~~~~~iN~~s~~~p~~p~l~~~~~~~ 229 (396)
+.+...+..+...+..... .+.+ +...++...+...+ ....|...|+|||.+|..|+.|+|.+..++.
T Consensus 332 ~~d~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~s~Nnvsf~~p~~p~L~a~~~~~ 411 (596)
T PLN00044 332 QYDTAFSINQARSIRWNVTASGARPNPQGSFHYGDITVTDVYLLQSMAPELIDGKLRATLNEISYIAPSTPLMLAQIFNV 411 (596)
T ss_pred cCCchhhhhhhHhhhhccCCCcCCCCCcccceeeEEeeeeeeeeccccccccCCeEEEEECcccCCCCCCcchhhhhccC
Confidence 4444332222222211111 1111 11111111111010 0112457899999999999999998777777
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCcccccceEEeecCCEEEEEEecCCCCCCCCCCCCCeeecCCceEEEeecCCCC
Q 016030 230 KDAFDQNGPPENFSNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKF 309 (396)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~vi~N~~~~~~~~~~~HP~HLHG~~F~Vl~~g~g~~ 309 (396)
.+.|+...+. . +++......+.++.+++|++|||+|+|.. ...||||||||+|+||++|.|.|
T Consensus 412 ~gv~~~~fp~-----~------pp~~~~~~~t~v~~~~~n~~VeiV~qn~~------~~~HP~HLHGh~F~Vvg~G~G~~ 474 (596)
T PLN00044 412 PGVFKLDFPN-----H------PMNRLPKLDTSIINGTYKGFMEIIFQNNA------TNVQSYHLDGYAFFVVGMDYGLW 474 (596)
T ss_pred CCcccCCCCC-----C------CCccccccCceEEEcCCCCEEEEEEeCCC------CCCCCeeEcCccEEEEeecCCCC
Confidence 7666543110 0 00111233567889999999999999964 35899999999999999999999
Q ss_pred CcccccccCCCCCCccceEEeCCCcEEEEEEEcCCCeeeEEeecchhhhhcCcEEEEee-----c-cccccCCCCccccc
Q 016030 310 TKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLAL-----G-VETVGNIPNQALAC 383 (396)
Q Consensus 310 ~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adnpG~w~~HCHi~~H~~~GM~~~~~~-----~-~~~~~~~P~~~~~c 383 (396)
+..++..+|+.||++||||.|+++||++|||++||||+|+|||||++|+..||+++|.| + .++++++|++++.|
T Consensus 475 ~~~~~~~~Nl~nPp~RdTv~vp~~gW~aIRF~aDNPG~W~lHCH~~~h~~~Gm~~~~~v~~~~~~~~~~~~~pP~~~~~C 554 (596)
T PLN00044 475 TDNSRGTYNKWDGVARSTIQVFPGAWTAILVFLDNAGIWNLRVENLDAWYLGQEVYINVVNPEDNSNKTVLPIPDNAIFC 554 (596)
T ss_pred CCCcccccccCCCCccceEEeCCCCeEEEEEecCCCEEehhhccCchhhcccCcEEEEEecCCCCccccccCCCcccCcc
Confidence 87777789999999999999999999999999999999999999999999999999843 3 45678899999999
Q ss_pred ccccc
Q 016030 384 GLTGK 388 (396)
Q Consensus 384 ~~~~~ 388 (396)
|..+.
T Consensus 555 g~~~~ 559 (596)
T PLN00044 555 GALSS 559 (596)
T ss_pred ccccc
Confidence 86544
No 5
>PLN02792 oxidoreductase
Probab=100.00 E-value=2.3e-67 Score=531.26 Aligned_cols=337 Identities=26% Similarity=0.432 Sum_probs=250.3
Q ss_pred CCCCceEEEccCCCCCCccccccCCCCcccccccCCCCCCceEEEEcCCCeEEEEEEecCccceEEEEEeCceeEEEEeC
Q 016030 8 PQGHYVGLVSHRGQFNCSLAAHFSNGSAEQCKLRGNEQCAPQILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEAD 87 (396)
Q Consensus 8 ~~~~~s~LiNG~g~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~v~~G~~yRlRlINa~~~~~~~~sId~h~l~VIa~D 87 (396)
|...+++||||+|++.| ++|+|++||+|||||||+|+.+.+.|+|+||+|+|||+|
T Consensus 176 ~~~~d~~liNG~~~~~~------------------------~~~~v~~Gk~yRlRliNa~~~~~~~f~i~gH~~tVI~~D 231 (536)
T PLN02792 176 PLMPDGVMINGQGVSYV------------------------YSITVDKGKTYRFRISNVGLQTSLNFEILGHQLKLIEVE 231 (536)
T ss_pred CCCCCEEEEeccCCCCc------------------------ceEEECCCCEEEEEEEEcCCCceEEEEECCcEEEEEEeC
Confidence 33568999999998643 479999999999999999999999999999999999999
Q ss_pred CceeeeeEeceEEecCCceEEEEEeeCCCCCcceEEEEEecCCCCCCCCcceEEEEccCCCCCCCCCCCCCCCCCCCCcc
Q 016030 88 GNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAGVRGRKPATPPALTLLNYHPTSASKIPLSPPPITPRWDDYDH 167 (396)
Q Consensus 88 G~~v~P~~v~~l~i~~GqRyDVlv~~~~~~~~~y~ir~~~~~~~~~~~~~~~il~y~~~~~~~~p~~~~~~~~~~~~~~~ 167 (396)
|++++|..+++|.|++||||||||+++|.++ +|||++..... .....+.|||+|.++..... ..+..+.+.+...
T Consensus 232 G~~v~p~~~~~l~i~~GqRydVlV~a~~~~g-~Y~i~a~~~~~-~~~~~~~ail~Y~g~~~~~~---~~p~~p~~~~~~~ 306 (536)
T PLN02792 232 GTHTVQSMYTSLDIHVGQTYSVLVTMDQPPQ-NYSIVVSTRFI-AAKVLVSSTLHYSNSKGHKI---IHARQPDPDDLEW 306 (536)
T ss_pred CccCCCcceeEEEEccCceEEEEEEcCCCCc-eEEEEEEeccC-CCCCceEEEEEECCCCCCCC---CCCCCCCcCCccc
Confidence 9999999999999999999999999999765 99999986532 23356789999976533211 1122223333332
Q ss_pred cccccccccccCC--CCC-CCC--------ccceEEEEeecccccCCeEEEEEcCccCcCCCCCchhhhhccCCCCCCCC
Q 016030 168 SKSFSNKIFALMG--SPK-PPT--------NFHRRLTLLNTQNTINGFTKWAINNVSLTLPPTPYLGSIKYGLKDAFDQN 236 (396)
Q Consensus 168 ~~~~~~~~~~~~~--~~~-~~~--------~~~~~i~~~~~~~~~~g~~~~~iN~~s~~~p~~p~l~~~~~~~~~~~~~~ 236 (396)
+..+......... .+. .+. ..++++.+........+...|+|||++|..|+.|+|.+.++++.+.|..+
T Consensus 307 ~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iN~~s~~~p~~p~L~a~~~~~~g~~~~~ 386 (536)
T PLN02792 307 SIKQAQSIRTNLTASGPRTNPQGSYHYGKMKISRTLILESSAALVKRKQRYAINGVSFVPSDTPLKLADHFKIKGVFKVG 386 (536)
T ss_pred cccchhhhhhccCCCCCCCCCCcccccceeccceeEEecccccccCceeEEEECCcccCCCCCchhhhhhhccCCCcCcc
Confidence 2211110000000 011 111 11223322221122234578999999999999999998777665555321
Q ss_pred CCCCCCCCCCCCCCCCCCCCcccccceEEeecCCEEEEEEecCCCCCCCCCCCCCeeecCCceEEEeecCCCCCcccccc
Q 016030 237 GPPENFSNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKK 316 (396)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~vi~N~~~~~~~~~~~HP~HLHG~~F~Vl~~g~g~~~~~~~~~ 316 (396)
. |+.. ++.......++.++.++.|++|||+|+|.+ ...||||||||+||||++|.|.|++.++..
T Consensus 387 ~----~~~~-----p~~~~~~~~~~~v~~~~~~~~VeiViqn~~------~~~HP~HLHGh~F~Vvg~G~G~~~~~~~~~ 451 (536)
T PLN02792 387 S----IPDK-----PRRGGGMRLDTSVMGAHHNAFLEIIFQNRE------KIVQSYHLDGYNFWVVGINKGIWSRASRRE 451 (536)
T ss_pred c----CccC-----CcccCCCccCceEEEcCCCCEEEEEEECCC------CCCCCeeeCCCceEEEeecCCCCCcccccc
Confidence 0 1100 000011223567889999999999999965 358999999999999999999998766778
Q ss_pred cCCCCCCccceEEeCCCcEEEEEEEcCCCeeeEEeecchhhhhcCcEEEEe-----eccccccCCCCcccccccccc
Q 016030 317 FNLKNPPLKNTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLA-----LGVETVGNIPNQALACGLTGK 388 (396)
Q Consensus 317 ~n~~~p~~rDTv~vp~~g~~~irf~adnpG~w~~HCHi~~H~~~GM~~~~~-----~~~~~~~~~P~~~~~c~~~~~ 388 (396)
+|+.||++||||.|+++||++|||+|||||+|+||||+.+|+..||.++|. ++.++++++|++++.||..+.
T Consensus 452 ~Nl~nP~~RdTv~v~~~gw~aIRf~aDNPGvW~~HCh~~~h~~~Gm~~~~~v~~~~~~~~~~~~pP~~~~~Cg~~~~ 528 (536)
T PLN02792 452 YNLKDAISRSTTQVYPESWTAVYVALDNVGMWNLRSQFWARQYLGQQFYLRVYSPTHSLKDEYPLPKNALLCGRASN 528 (536)
T ss_pred cCcCCCCccceEEECCCCEEEEEEEeeCCEEEeeeEcchhccccceEEEEEEccCCCccccccCCCcccCccccccC
Confidence 999999999999999999999999999999999999999999999999994 445678889999999985543
No 6
>PLN02991 oxidoreductase
Probab=100.00 E-value=2.2e-66 Score=523.59 Aligned_cols=332 Identities=26% Similarity=0.457 Sum_probs=242.9
Q ss_pred CCceEEEccCCCCCCccccccCCCCcccccccCCCCCCceEEEEcCCCeEEEEEEecCccceEEEEEeCceeEEEEeCCc
Q 016030 10 GHYVGLVSHRGQFNCSLAAHFSNGSAEQCKLRGNEQCAPQILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGN 89 (396)
Q Consensus 10 ~~~s~LiNG~g~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~v~~G~~yRlRlINa~~~~~~~~sId~h~l~VIa~DG~ 89 (396)
-.+++|||||+.. ++++|++||+|||||||+|+.+.+.|+||||+|+|||+||+
T Consensus 189 ~~d~~liNG~~~~--------------------------~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~tVIa~DG~ 242 (543)
T PLN02991 189 LPDGILINGRGSG--------------------------ATLNIEPGKTYRLRISNVGLQNSLNFRIQNHTMKLVEVEGT 242 (543)
T ss_pred CCCEEEEccCCCC--------------------------ceEEECCCCEEEEEEEeccCCeeEEEEECCCEEEEEEeCCc
Confidence 4589999999863 36899999999999999999999999999999999999999
Q ss_pred eeeeeEeceEEecCCceEEEEEeeCCCCCcceEEEEEecCCCCCCCCcceEEEEccCCCCCC-CCCCCCCCCCCCCCccc
Q 016030 90 YVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAGVRGRKPATPPALTLLNYHPTSASKI-PLSPPPITPRWDDYDHS 168 (396)
Q Consensus 90 ~v~P~~v~~l~i~~GqRyDVlv~~~~~~~~~y~ir~~~~~~~~~~~~~~~il~y~~~~~~~~-p~~~~~~~~~~~~~~~~ 168 (396)
+++|..++.|.|++||||||||+++|..+ +||||+...... ....+.|||+|.++..... +....+....+.. ...
T Consensus 243 ~~~p~~~~~l~i~~GQRydvlv~a~~~~~-~y~i~~~~~~~~-~~~~~~AIl~Y~g~~~~~~~~~p~~p~~~~~~~-~~~ 319 (543)
T PLN02991 243 HTIQTPFSSLDVHVGQSYSVLITADQPAK-DYYIVVSSRFTS-KILITTGVLHYSNSAGPVSGPIPDGPIQLSWSF-DQA 319 (543)
T ss_pred cccceeeeEEEEcCCcEEEEEEECCCCCC-cEEEEEeeccCC-CCcceEEEEEeCCCCCCCCCCCCCCCccccccc-cch
Confidence 99999999999999999999999999775 999998764332 3345789999976542211 1100011111110 000
Q ss_pred ccccccccccCCCCCCCC-------ccceEEEEeecccccCCeEEEEEcCccCcCCCCCchhhhhccCCCCCCCCCCCCC
Q 016030 169 KSFSNKIFALMGSPKPPT-------NFHRRLTLLNTQNTINGFTKWAINNVSLTLPPTPYLGSIKYGLKDAFDQNGPPEN 241 (396)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~g~~~~~iN~~s~~~p~~p~l~~~~~~~~~~~~~~~~~~~ 241 (396)
......+......+.|.. ..++.+.+.......++...|+|||.+|..|..|+|.+.++++.+.|+...-+.
T Consensus 320 ~~~~~~l~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iN~~s~~~p~~p~L~~~~~~~~g~~~~~~~~~- 398 (543)
T PLN02991 320 RAIKTNLTASGPRPNPQGSYHYGKINITRTIRLANSAGNIEGKQRYAVNSASFYPADTPLKLADYFKIAGVYNPGSIPD- 398 (543)
T ss_pred hhhhhcccCCCCCCCCCccccccccccceeEEEeecccccCceEEEEECCCccCCCCCChhhhhhhcccCccccccccc-
Confidence 000000110000111110 112222221111112355789999999999999999887776666664321110
Q ss_pred CCCCCCCCCCCCCCCcccccceEEeecCCEEEEEEecCCCCCCCCCCCCCeeecCCceEEEeecCCCCCcccccccCCCC
Q 016030 242 FSNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKN 321 (396)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~vi~N~~~~~~~~~~~HP~HLHG~~F~Vl~~g~g~~~~~~~~~~n~~~ 321 (396)
++ .+......+.++.++.|++|||+|+|.+ ...||||||||+||||++|.|.|+..+...+|+.|
T Consensus 399 ~~---------~~~~~~~~~~v~~~~~~~~VeiViqn~~------~~~HP~HLHGh~F~Vvg~G~G~f~~~~~~~~Nl~n 463 (543)
T PLN02991 399 QP---------TNGAIFPVTSVMQTDYKAFVEIVFENWE------DIVQTWHLDGYSFYVVGMELGKWSAASRKVYNLND 463 (543)
T ss_pred cC---------CCCccccCCcEEEcCCCCEEEEEEeCCC------CCCCCeeeCCcceEEEEeCCCCCCcccccccCCCC
Confidence 00 0111223456789999999999999975 35899999999999999999999876667799999
Q ss_pred CCccceEEeCCCcEEEEEEEcCCCeeeEEeecchhhhhcCcEEEEe-----eccccccCCCCcccccccc
Q 016030 322 PPLKNTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLA-----LGVETVGNIPNQALACGLT 386 (396)
Q Consensus 322 p~~rDTv~vp~~g~~~irf~adnpG~w~~HCHi~~H~~~GM~~~~~-----~~~~~~~~~P~~~~~c~~~ 386 (396)
|++|||+.||++||++|||+|||||.|+|||||++|+..||.+++. ++.++++++|++++.||..
T Consensus 464 P~rRDTv~vp~~Gw~vIRF~aDNPG~W~~HCHi~~h~~~gm~~~~~v~~~~~~~~~~~~~P~~~~~Cg~~ 533 (543)
T PLN02991 464 AVSRCTVQVYPRSWTAIYVSLDNVGMWNLRSELWERQYLGQQFYMRVYTTSTSLRDEYLIPKNALLCGRA 533 (543)
T ss_pred CCcccEEEECCCCEEEEEEECCCCEEeeeeeCccccccccEEEEEEecCCCCccccccCCCcccCccccC
Confidence 9999999999999999999999999999999999999999999984 4456788899999999743
No 7
>PLN02354 copper ion binding / oxidoreductase
Probab=100.00 E-value=8.6e-66 Score=522.16 Aligned_cols=338 Identities=26% Similarity=0.478 Sum_probs=243.2
Q ss_pred CCCceEEEccCCCCCCccccccCCCCcccccccCCCCCCceEEEEcCCCeEEEEEEecCccceEEEEEeCceeEEEEeCC
Q 016030 9 QGHYVGLVSHRGQFNCSLAAHFSNGSAEQCKLRGNEQCAPQILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADG 88 (396)
Q Consensus 9 ~~~~s~LiNG~g~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~v~~G~~yRlRlINa~~~~~~~~sId~h~l~VIa~DG 88 (396)
...+++||||++.+.|. ...++++|++||+|||||||+|+...+.|+||||+|+|||+||
T Consensus 187 ~~~d~~liNG~~~~~~~--------------------~~~~~~~v~~Gk~yRlRiINa~~~~~~~f~IdgH~~tVIa~DG 246 (552)
T PLN02354 187 GRPDGVLINGKSGKGDG--------------------KDEPLFTMKPGKTYRYRICNVGLKSSLNFRIQGHKMKLVEMEG 246 (552)
T ss_pred CCCCeEEEeCCcCCCCC--------------------CCceEEEECCCCEEEEEEEecCCCceEEEEECCceEEEEEeCC
Confidence 44689999999876431 1135799999999999999999999999999999999999999
Q ss_pred ceeeeeEeceEEecCCceEEEEEeeCCCCCcceEEEEEecCCCCCCCCcceEEEEccCCCCCCCCCCCCCCC-CCC-CCc
Q 016030 89 NYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAGVRGRKPATPPALTLLNYHPTSASKIPLSPPPITP-RWD-DYD 166 (396)
Q Consensus 89 ~~v~P~~v~~l~i~~GqRyDVlv~~~~~~~~~y~ir~~~~~~~~~~~~~~~il~y~~~~~~~~p~~~~~~~~-~~~-~~~ 166 (396)
++++|..++.|.|++||||||||+++|.++ +|||++..... .......|+|+|.++.....+. .|..+ .+. ...
T Consensus 247 ~~v~p~~~~~l~i~~GqRydVlv~a~~~~g-~Y~i~a~~~~~-~~~~~~~ail~Y~g~~~~~~~~--~p~~~~~~~~~~~ 322 (552)
T PLN02354 247 SHVLQNDYDSLDVHVGQCFSVLVTANQAPK-DYYMVASTRFL-KKVLTTTGIIRYEGGKGPASPE--LPEAPVGWAWSLN 322 (552)
T ss_pred cccCCcceeEEEEccCceEEEEEECCCCCC-cEEEEEecccc-CCCccEEEEEEECCCCCCCCCC--CCCCCcccccchh
Confidence 999999999999999999999999999775 99999874322 2335678999997654321111 11111 110 000
Q ss_pred ccccccccccccCCCCCCC-------CccceEEEEeecccccCCeEEEEEcCccCcCCCCCchhhhhccCC-CCCCC---
Q 016030 167 HSKSFSNKIFALMGSPKPP-------TNFHRRLTLLNTQNTINGFTKWAINNVSLTLPPTPYLGSIKYGLK-DAFDQ--- 235 (396)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~-------~~~~~~i~~~~~~~~~~g~~~~~iN~~s~~~p~~p~l~~~~~~~~-~~~~~--- 235 (396)
....+...+......+.+. ...++.+.+.......++...|++||++|..|..|+|.+...++. +.+..
T Consensus 323 ~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iNn~s~~~p~~P~L~~~~~~~~~g~~~~~~~ 402 (552)
T PLN02354 323 QFRSFRWNLTASAARPNPQGSYHYGKINITRTIKLVNSASKVDGKLRYALNGVSHVDPETPLKLAEYFGVADKVFKYDTI 402 (552)
T ss_pred hhhhhhhcccccccCCCCCCccccccccccceEEEecccccCCceEEEEECCccCCCCCCChHHhhhhcccCCccccCcc
Confidence 0001111000000011110 112334433222112345678999999999999999988765443 22221
Q ss_pred -CCCCCCCCCCCCCCCCCCCCCcccccceEEeecCCEEEEEEecCCCCCCCCCCCCCeeecCCceEEEeecCCCCCcccc
Q 016030 236 -NGPPENFSNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDE 314 (396)
Q Consensus 236 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~vi~N~~~~~~~~~~~HP~HLHG~~F~Vl~~g~g~~~~~~~ 314 (396)
..+|..+ .....+..++.++.|++|||+|+|.+ ...||||||||+||||++|.|.|+.+..
T Consensus 403 ~~~pp~~~------------~~~~~~~~v~~~~~~~~VeiVi~n~~------~~~HP~HLHGh~F~Vlg~G~G~~~~~~~ 464 (552)
T PLN02354 403 KDNPPAKI------------TKIKIQPNVLNITFRTFVEIIFENHE------KSMQSWHLDGYSFFAVAVEPGTWTPEKR 464 (552)
T ss_pred ccCCcccc------------CccccCCeeEEcCCCCEEEEEEeCCC------CCCCCCcCCCccEEEEeecCCCCCcccc
Confidence 1111110 11233557889999999999999975 4589999999999999999999987666
Q ss_pred cccCCCCCCccceEEeCCCcEEEEEEEcCCCeeeEEeecchhhhhcCcEEEEe--eccc---cccCCCCcccccccccc
Q 016030 315 KKFNLKNPPLKNTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLA--LGVE---TVGNIPNQALACGLTGK 388 (396)
Q Consensus 315 ~~~n~~~p~~rDTv~vp~~g~~~irf~adnpG~w~~HCHi~~H~~~GM~~~~~--~~~~---~~~~~P~~~~~c~~~~~ 388 (396)
..+|+.||++|||+.||++||++|||+|||||+|+|||||++|+..||.++|. ++++ ++.++|++.+.|+..++
T Consensus 465 ~~~nl~nP~rRDTv~vp~~Gw~vIRF~aDNPGvW~~HCHi~~H~~~g~~l~~~v~~~~~~~~~~~~~P~~~~~C~~~~~ 543 (552)
T PLN02354 465 KNYNLLDAVSRHTVQVYPKSWAAILLTFDNAGMWNIRSENWERRYLGQQLYASVLSPERSLRDEYNMPENALLCGKVKG 543 (552)
T ss_pred ccCCcCCCCccceEEeCCCCeEEEEEEecCCeEEeeeccccccccccceEEEEEeCCccccCcCCCCCccccccccccC
Confidence 68999999999999999999999999999999999999999898888887763 4443 34458999999986654
No 8
>PLN02835 oxidoreductase
Probab=100.00 E-value=1.5e-65 Score=519.65 Aligned_cols=332 Identities=27% Similarity=0.454 Sum_probs=241.4
Q ss_pred CCCceEEEccCCCCCCccccccCCCCcccccccCCCCCCceEEEEcCCCeEEEEEEecCccceEEEEEeCceeEEEEeCC
Q 016030 9 QGHYVGLVSHRGQFNCSLAAHFSNGSAEQCKLRGNEQCAPQILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADG 88 (396)
Q Consensus 9 ~~~~s~LiNG~g~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~v~~G~~yRlRlINa~~~~~~~~sId~h~l~VIa~DG 88 (396)
...+++||||++.. .++|++||+|||||||+|+.+.+.|+||||+|+|||+||
T Consensus 189 ~~~d~~liNG~~~~---------------------------~~~v~~G~~yRlRliNa~~~~~~~f~i~gH~~~VI~~DG 241 (539)
T PLN02835 189 PFPDGVLINGQTQS---------------------------TFSGDQGKTYMFRISNVGLSTSLNFRIQGHTMKLVEVEG 241 (539)
T ss_pred CCCceEEEccccCc---------------------------eEEECCCCEEEEEEEEcCCCccEEEEECCCEEEEEEECC
Confidence 34689999999763 589999999999999999999999999999999999999
Q ss_pred ceeeeeEeceEEecCCceEEEEEeeCCCCCcceEEEEEecCCCCCCCCcceEEEEccCCCCCCCCCCCCCCCCC---CCC
Q 016030 89 NYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAGVRGRKPATPPALTLLNYHPTSASKIPLSPPPITPRW---DDY 165 (396)
Q Consensus 89 ~~v~P~~v~~l~i~~GqRyDVlv~~~~~~~~~y~ir~~~~~~~~~~~~~~~il~y~~~~~~~~p~~~~~~~~~~---~~~ 165 (396)
++++|..++.|.|++||||||||++++.++ +||||+..... .......|+|+|.++.....+ ..|..+.+ .+.
T Consensus 242 ~~v~p~~~~~l~i~~GqRydvlv~~~~~~g-~y~i~a~~~~~-~~~~~~~ail~Y~~~~~~~~~--~~p~~p~~~~~~~~ 317 (539)
T PLN02835 242 SHTIQNIYDSLDVHVGQSVAVLVTLNQSPK-DYYIVASTRFT-RQILTATAVLHYSNSRTPASG--PLPALPSGELHWSM 317 (539)
T ss_pred ccCCCceeeEEEECcCceEEEEEEcCCCCC-cEEEEEEcccc-CCCcceEEEEEECCCCCCCCC--CCCCCCcccccccc
Confidence 999999999999999999999999998764 99999864322 233567899999764321110 01111111 001
Q ss_pred cccccccccccccCCCCCCC-------CccceEEEEeecccccCCeEEEEEcCccCcCCCCCchhhhhccCCCCCCCCCC
Q 016030 166 DHSKSFSNKIFALMGSPKPP-------TNFHRRLTLLNTQNTINGFTKWAINNVSLTLPPTPYLGSIKYGLKDAFDQNGP 238 (396)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~i~~~~~~~~~~g~~~~~iN~~s~~~p~~p~l~~~~~~~~~~~~~~~~ 238 (396)
.........+......+.+. ...++++.+.......+|...|++||++|..|..|+|.+...+..+.|.....
T Consensus 318 ~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~w~iN~~s~~~p~~P~L~~~~~~~~~~~~~~~~ 397 (539)
T PLN02835 318 RQARTYRWNLTASAARPNPQGSFHYGKITPTKTIVLANSAPLINGKQRYAVNGVSYVNSDTPLKLADYFGIPGVFSVNSI 397 (539)
T ss_pred chhhccccccCccccCCCCCccccccccCCCceEEEeccccccCCeEEEEECCcccCCCCCChhhhhhhcCCCccccCcc
Confidence 00000000000000001110 11233443322112234567899999999999999987766654444432110
Q ss_pred CCCCCCCCCCCCCCCCCCcccccceEEeecCCEEEEEEecCCCCCCCCCCCCCeeecCCceEEEeecCCCCCcccccccC
Q 016030 239 PENFSNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFN 318 (396)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~vi~N~~~~~~~~~~~HP~HLHG~~F~Vl~~g~g~~~~~~~~~~n 318 (396)
. .. +.+...+.++.++.++.|++|||+|+|.+ ...||||||||+||||++|.|.|+......+|
T Consensus 398 ~-~~---------~~~~~~~~~t~~~~~~~~~~Veivi~N~~------~~~HP~HLHGh~F~Vlg~G~g~~~~~~~~~~n 461 (539)
T PLN02835 398 Q-SL---------PSGGPAFVATSVMQTSLHDFLEVVFQNNE------KTMQSWHLDGYDFWVVGYGSGQWTPAKRSLYN 461 (539)
T ss_pred c-cC---------CCCCccccCCeEEEcCCCCEEEEEEECCC------CCCCCCCCCCccEEEEeccCCCCCcccccccC
Confidence 0 00 01112344577899999999999999975 45899999999999999999999765555689
Q ss_pred CCCCCccceEEeCCCcEEEEEEEcCCCeeeEEeecchhhhhcCcEEEEee-----ccccccCCCCccccccccc
Q 016030 319 LKNPPLKNTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLAL-----GVETVGNIPNQALACGLTG 387 (396)
Q Consensus 319 ~~~p~~rDTv~vp~~g~~~irf~adnpG~w~~HCHi~~H~~~GM~~~~~~-----~~~~~~~~P~~~~~c~~~~ 387 (396)
+.||+|||||.|+++||++|||+|||||.|+|||||++|+..||+++|.| +.++++++|++++.||..+
T Consensus 462 l~nP~~RDTv~vp~~gw~~IrF~aDNPG~Wl~HCHi~~H~~~Gm~~~~~V~~~~~~~~~~~~~P~~~~~Cg~~~ 535 (539)
T PLN02835 462 LVDALTRHTAQVYPKSWTTILVSLDNQGMWNMRSAIWERQYLGQQFYLRVWNQVHSLANEYDIPDNALLCGKAI 535 (539)
T ss_pred CCCCCccceEEeCCCCEEEEEEECcCCEEeeeeecchhhhhcccEEEEEEccCCCccccccCCCccccccccCc
Confidence 99999999999999999999999999999999999999999999999954 4467888999999998543
No 9
>PLN02168 copper ion binding / pectinesterase
Probab=100.00 E-value=3.4e-65 Score=515.74 Aligned_cols=333 Identities=29% Similarity=0.505 Sum_probs=237.0
Q ss_pred CCCceEEEccCCCCCCccccccCCCCcccccccCCCCCCceEEEEcCCCeEEEEEEecCccceEEEEEeCceeEEEEeCC
Q 016030 9 QGHYVGLVSHRGQFNCSLAAHFSNGSAEQCKLRGNEQCAPQILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADG 88 (396)
Q Consensus 9 ~~~~s~LiNG~g~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~v~~G~~yRlRlINa~~~~~~~~sId~h~l~VIa~DG 88 (396)
...+++||||++... ++++|++||+|||||||+|+.+.+.|+||||+|+|||+||
T Consensus 186 ~~~d~~liNG~~~~~-------------------------~~~~v~~G~~yRlRiiNa~~~~~~~~~IdgH~~tVIa~DG 240 (545)
T PLN02168 186 PNPDGILFNGRGPEE-------------------------TFFAFEPGKTYRLRISNVGLKTCLNFRIQDHDMLLVETEG 240 (545)
T ss_pred CCCCEEEEeccCCCc-------------------------ceEEeCCCCEEEEEEEeccCCceEEEEECCcEEEEEEECC
Confidence 356899999998642 4799999999999999999999999999999999999999
Q ss_pred ceeeeeEeceEEecCCceEEEEEeeCCCC-C--cceEEEEEecCCCCCCCCcceEEEEccCCCCCCCCCCCCCCCCCCCC
Q 016030 89 NYVQPFEVDDMDIYSGESYSVLLTTNQDP-S--YNYWISAGVRGRKPATPPALTLLNYHPTSASKIPLSPPPITPRWDDY 165 (396)
Q Consensus 89 ~~v~P~~v~~l~i~~GqRyDVlv~~~~~~-~--~~y~ir~~~~~~~~~~~~~~~il~y~~~~~~~~p~~~~~~~~~~~~~ 165 (396)
++++|..+++|.|++||||||||++++.. | ++||||+...... ....+.|+|+|.++.... ..+.+..+.+.+.
T Consensus 241 ~~v~p~~~~~l~i~~GqRydvlv~a~~~~~g~~~~Y~i~a~~~~~~-~~~~~~ail~Y~~~~~~~--~~p~p~~p~~~~~ 317 (545)
T PLN02168 241 TYVQKRVYSSLDIHVGQSYSVLVTAKTDPVGIYRSYYIVATARFTD-AYLGGVALIRYPNSPLDP--VGPLPLAPALHDY 317 (545)
T ss_pred eECCCceeeEEEEcCCceEEEEEEcCCCCCCCcceEEEEEEecccC-CCcceEEEEEECCCCCCC--CCCCCCCCccccc
Confidence 99999999999999999999999998754 3 4899999865332 345678999997643221 1111222223222
Q ss_pred cccccccccc---ccc-CCCCCCC-------CccceEEEEeecccccCCeEEEEEcCccCcCCCCCchhhhhccCCCCCC
Q 016030 166 DHSKSFSNKI---FAL-MGSPKPP-------TNFHRRLTLLNTQNTINGFTKWAINNVSLTLPPTPYLGSIKYGLKDAFD 234 (396)
Q Consensus 166 ~~~~~~~~~~---~~~-~~~~~~~-------~~~~~~i~~~~~~~~~~g~~~~~iN~~s~~~p~~p~l~~~~~~~~~~~~ 234 (396)
..+.++.... +.. ...+.+. ...++.+.+.......+|...|+|||.+|..|..|+|.+..+++.+.+.
T Consensus 318 ~~~~~~~~~~~~~l~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iN~~s~~~p~~P~l~~~~~~~~~~~~ 397 (545)
T PLN02168 318 FSSVEQALSIRMDLNVGAARSNPQGSYHYGRINVTRTIILHNDVMLSSGKLRYTINGVSFVYPGTPLKLVDHFQLNDTII 397 (545)
T ss_pred ccccchhhhhhhcCCCCCCCCCCcccccccccccceeEEecccccccCceEEEEECCCccCCCCCchhhhhhcccccccc
Confidence 2111111100 000 0001111 1122333222211112356789999999999999998766554433222
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCcccccceEEeecCCEEEEEEecCCCCCCCCCCCCCeeecCCceEEEeecCCCCCcccc
Q 016030 235 QNGPPENFSNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDE 314 (396)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~vi~N~~~~~~~~~~~HP~HLHG~~F~Vl~~g~g~~~~~~~ 314 (396)
.+ .|+. .+.+.....++.++.++.|++|||+|+|.. ...||||||||+||||++|.|.|+..++
T Consensus 398 ~~----~~~~------~p~~~~~~~~~~v~~~~~~~~VeiViqn~~------~~~HP~HLHGh~F~Vvg~g~g~~~~~~~ 461 (545)
T PLN02168 398 PG----MFPV------YPSNKTPTLGTSVVDIHYKDFYHIVFQNPL------FSLESYHIDGYNFFVVGYGFGAWSESKK 461 (545)
T ss_pred cC----CCcc------CCCcCccccCceEEEecCCCEEEEEEeCCC------CCCCCeeeCCCceEEEECCCCCCCcccc
Confidence 11 0110 000111122457889999999999999975 3589999999999999999999986655
Q ss_pred cccCCCCCCccceEEeCCCcEEEEEEEcCCCeeeEEeecchhhhhcCcEEEEee------c-----cccccCCCCccccc
Q 016030 315 KKFNLKNPPLKNTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLAL------G-----VETVGNIPNQALAC 383 (396)
Q Consensus 315 ~~~n~~~p~~rDTv~vp~~g~~~irf~adnpG~w~~HCHi~~H~~~GM~~~~~~------~-----~~~~~~~P~~~~~c 383 (396)
..+|+.||++|||+.||++||++|||+|||||.|+|||||++|+..||++.|++ . .+.++++|++++.|
T Consensus 462 ~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDNPG~Wl~HCHi~~~~h~g~gl~~~v~~~~~e~p~~~~~~~~~~~P~~~~~c 541 (545)
T PLN02168 462 AGYNLVDAVSRSTVQVYPYSWTAILIAMDNQGMWNVRSQKAEQWYLGQELYMRVKGEGEEDPSTIPVRDENPIPGNVIRC 541 (545)
T ss_pred ccCCCCCCCccceEEeCCCCEEEEEEEccCCeEEeeeecCcccceecCcEEEEEEcccccCccccccccccCCChhhccc
Confidence 679999999999999999999999999999999999999977777666655533 1 23456799999999
Q ss_pred cc
Q 016030 384 GL 385 (396)
Q Consensus 384 ~~ 385 (396)
|.
T Consensus 542 g~ 543 (545)
T PLN02168 542 GK 543 (545)
T ss_pred cc
Confidence 84
No 10
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=100.00 E-value=5.1e-65 Score=519.57 Aligned_cols=349 Identities=34% Similarity=0.580 Sum_probs=245.4
Q ss_pred CCCCceEEEccCCC--CCCccccccCCCCcccccccCCCCCCceEEEEcCCCeEEEEEEecCccceEEEEEeCceeEEEE
Q 016030 8 PQGHYVGLVSHRGQ--FNCSLAAHFSNGSAEQCKLRGNEQCAPQILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVE 85 (396)
Q Consensus 8 ~~~~~s~LiNG~g~--~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~v~~G~~yRlRlINa~~~~~~~~sId~h~l~VIa 85 (396)
|...+++|||||+. ++|.. ...++|+|++||+|||||||+|+.+.+.|+||||+|+|||
T Consensus 163 ~~~~d~~liNG~~~~~~~~~~-------------------~~~~~i~v~~G~~~RlRlINa~~~~~~~~~idgH~~~VIa 223 (539)
T TIGR03389 163 PNVSDAYTINGHPGPLYNCSS-------------------KDTFKLTVEPGKTYLLRIINAALNDELFFAIANHTLTVVE 223 (539)
T ss_pred CCccceEEECCCcCCCCCCCC-------------------CCceEEEECCCCEEEEEEEeccCCceEEEEECCCeEEEEE
Confidence 33458999999964 34531 1236899999999999999999999999999999999999
Q ss_pred eCCceeeeeEeceEEecCCceEEEEEeeCCCCCcceEEEEEecCCCC---CCCCcceEEEEccCCCCCCCCCCCCCCCCC
Q 016030 86 ADGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAGVRGRKP---ATPPALTLLNYHPTSASKIPLSPPPITPRW 162 (396)
Q Consensus 86 ~DG~~v~P~~v~~l~i~~GqRyDVlv~~~~~~~~~y~ir~~~~~~~~---~~~~~~~il~y~~~~~~~~p~~~~~~~~~~ 162 (396)
+||.+++|+.+++|.|++||||||+|++++.+| +||||+.....+. ....+.|+|+|.+......+.. +..+.+
T Consensus 224 ~DG~~~~P~~~~~l~i~~GqRydVlv~a~~~~g-~y~i~~~~~~~~~~~~~~~~~~ail~Y~~~~~~~~p~~--~~~~~~ 300 (539)
T TIGR03389 224 VDATYTKPFKTKTIVIGPGQTTNVLLTADQSPG-RYFMAARPYMDAPGAFDNTTTTAILQYKGTSNSAKPIL--PTLPAY 300 (539)
T ss_pred eCCcccCceEeCeEEecCCCEEEEEEECCCCCc-eEEEEEeccccCccCCCCcceEEEEEECCCCCCCCCCC--CCCCCC
Confidence 999999999999999999999999999998775 9999987542211 2345789999976543222211 111112
Q ss_pred CCCccccccccccccc--CC-CCCCCCccceEEEEeeccc----------ccC-CeEEEEEcCccCcCCCCCchhhhhcc
Q 016030 163 DDYDHSKSFSNKIFAL--MG-SPKPPTNFHRRLTLLNTQN----------TIN-GFTKWAINNVSLTLPPTPYLGSIKYG 228 (396)
Q Consensus 163 ~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~i~~~~~~~----------~~~-g~~~~~iN~~s~~~p~~p~l~~~~~~ 228 (396)
.+......+...+... .. .+..+...++++.+..... ..+ ....|+|||++|..|..|+|.+...+
T Consensus 301 ~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~in~~s~~~p~~p~l~~~~~~ 380 (539)
T TIGR03389 301 NDTAAATNFSNKLRSLNSAQYPANVPVTIDRRLFFTIGLGLDPCPNNTCQGPNGTRFAASMNNISFVMPTTALLQAHYFG 380 (539)
T ss_pred CchhhhhHHHhhcccccccCCCCCCCCCCCeEEEEEeecccccCcccccccCCCcEEEEEECCcccCCCCcchhhhhhcc
Confidence 2211111111001100 00 0111223344443221111 011 23579999999999999998777655
Q ss_pred CCCCCCCC---CCCCCCCCCCCCCCCCCCCCcccccceEEeecCCEEEEEEecCCCCCCCCCCCCCeeecCCceEEEeec
Q 016030 229 LKDAFDQN---GPPENFSNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRG 305 (396)
Q Consensus 229 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~vi~N~~~~~~~~~~~HP~HLHG~~F~Vl~~g 305 (396)
+.+.+... .+|..|..+-. ....+.....+++++.++.|++|||+|+|.+.+ ....||||||||+||||++|
T Consensus 381 ~~~~~~~~~~~~~p~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~V~ivi~n~~~~---~~~~HP~HLHGh~F~Vlg~g 455 (539)
T TIGR03389 381 ISGVFTTDFPANPPTKFNYTGT--NLPNNLFTTNGTKVVRLKFNSTVELVLQDTSIL---GSENHPIHLHGYNFFVVGTG 455 (539)
T ss_pred cCCccccCCccCCCccccCCCC--CcccccccccCceEEEecCCCEEEEEEecCCcC---CCCCCcEeEcCCceEEEEec
Confidence 44333221 22333321100 000111123356789999999999999997532 13589999999999999999
Q ss_pred CCCCCcc-cccccCCCCCCccceEEeCCCcEEEEEEEcCCCeeeEEeecchhhhhcCcEEEEeec-----cccccCCCCc
Q 016030 306 EGKFTKE-DEKKFNLKNPPLKNTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALG-----VETVGNIPNQ 379 (396)
Q Consensus 306 ~g~~~~~-~~~~~n~~~p~~rDTv~vp~~g~~~irf~adnpG~w~~HCHi~~H~~~GM~~~~~~~-----~~~~~~~P~~ 379 (396)
.|.|+.. +...+|+.||++|||+.|+++||++|||+|||||.|+|||||+||++.||+++|+|. .++++++|+.
T Consensus 456 ~g~~~~~~~~~~~nl~nP~rRDTv~vp~~g~vvirf~adNPG~W~~HCHi~~H~~~Gm~~~~~~~~~~~~~~~~~~~p~~ 535 (539)
T TIGR03389 456 FGNFDPKKDPAKFNLVDPPERNTVGVPTGGWAAIRFVADNPGVWFMHCHLEVHTTWGLKMAFLVDNGKGPNQSLLPPPSD 535 (539)
T ss_pred cCCCCcccCccccccCCCCeeeeEEcCCCceEEEEEecCCCeEEEEEecccchhhhcceEEEEEccCCCCccccCCCCcc
Confidence 9998753 234689999999999999999999999999999999999999999999999999764 3568889999
Q ss_pred cccc
Q 016030 380 ALAC 383 (396)
Q Consensus 380 ~~~c 383 (396)
+++|
T Consensus 536 ~~~c 539 (539)
T TIGR03389 536 LPSC 539 (539)
T ss_pred CCCC
Confidence 9999
No 11
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=100.00 E-value=2.6e-60 Score=483.50 Aligned_cols=335 Identities=28% Similarity=0.534 Sum_probs=232.3
Q ss_pred CCceEEEccCCCCCCccccccCCCCcccccccCCCCCCceEEEEcCCCeEEEEEEecCccceEEEEEeCce-eEEEEeCC
Q 016030 10 GHYVGLVSHRGQFNCSLAAHFSNGSAEQCKLRGNEQCAPQILHVQPNKTYRLRIASTTALASLNLAVKNHK-MVVVEADG 88 (396)
Q Consensus 10 ~~~s~LiNG~g~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~v~~G~~yRlRlINa~~~~~~~~sId~h~-l~VIa~DG 88 (396)
..+++|||||+.+.|.... .. ....|..++++|++||+|||||||+|+.+.+.|+||+|+ |+|||+||
T Consensus 170 ~~d~~liNG~~~~~~~~~~---~~--------~~~~~~~~~~~v~~G~~yRlRlINa~~~~~~~~~idgH~~~~VIa~DG 238 (538)
T TIGR03390 170 ETEAVLLNGKSGNKSFYAQ---IN--------PSGSCMLPVIDVEPGKTYRLRFIGATALSLISLGIEDHENLTIIEADG 238 (538)
T ss_pred CCceEEECCcccccccccc---cc--------CCCCCcceEEEECCCCEEEEEEEccCCceEEEEEECCCCeEEEEEeCC
Confidence 3589999999887653210 00 112344578999999999999999999999999999999 99999999
Q ss_pred ceeeeeEeceEEecCCceEEEEEeeCCCC------CcceEEEEEecCCCCCCCCcceEEEEccCCCCCCCCCCCCCCCCC
Q 016030 89 NYVQPFEVDDMDIYSGESYSVLLTTNQDP------SYNYWISAGVRGRKPATPPALTLLNYHPTSASKIPLSPPPITPRW 162 (396)
Q Consensus 89 ~~v~P~~v~~l~i~~GqRyDVlv~~~~~~------~~~y~ir~~~~~~~~~~~~~~~il~y~~~~~~~~p~~~~~~~~~~ 162 (396)
++++|+.++.|.|++||||||||++++.. .++||||+..... ++...+.|||+|.+...+..+.. +..+..
T Consensus 239 ~~~~P~~v~~l~l~~GqRydVlv~~~~~~~~~~~~~~~Y~ir~~~~~~-~~~~~~~aiL~Y~~~~~~~~~~~--p~~~~~ 315 (538)
T TIGR03390 239 SYTKPAKIDHLQLGGGQRYSVLFKAKTEDELCGGDKRQYFIQFETRDR-PKVYRGYAVLRYRSDKASKLPSV--PETPPL 315 (538)
T ss_pred CCCCceEeCeEEEccCCEEEEEEECCCccccccCCCCcEEEEEeecCC-CCcceEEEEEEeCCCCCCCCCCC--CCCCCC
Confidence 99999999999999999999999999852 2599999976543 33455789999965433322211 111110
Q ss_pred ---CCCcccccccccccccCCCC--CCCCccceEEEEeecccc--cCCeEEEEEcCccCcC--CCCCchhhhhccCCCCC
Q 016030 163 ---DDYDHSKSFSNKIFALMGSP--KPPTNFHRRLTLLNTQNT--INGFTKWAINNVSLTL--PPTPYLGSIKYGLKDAF 233 (396)
Q Consensus 163 ---~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~--~~g~~~~~iN~~s~~~--p~~p~l~~~~~~~~~~~ 233 (396)
.......++....+.....+ .++...++++.+...+.. .++...|.+||.+|.. +..|+|.....+....
T Consensus 316 ~~~~~~~~~~~~~l~pl~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~g~~~~~~N~~s~~~~~~~~P~L~~~~~~~~~~- 394 (538)
T TIGR03390 316 PLPNSTYDWLEYELEPLSEENNQDFPTLDEVTRRVVIDAHQNVDPLNGRVAWLQNGLSWTESVRQTPYLVDIYENGLPA- 394 (538)
T ss_pred CccCcchhhhheeeEecCccccCCCCCCCcCceEEEEEccccccccCCeEEEEECCcccCCCCCCCchHHHHhcCCCCc-
Confidence 00000011111111111000 112345666655443322 2456789999999985 7889988765432100
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCcccccceEEeecCCEEEEEEecCCCCC--CCCCCCCCeeecCCceEEEeecCCCCCc
Q 016030 234 DQNGPPENFSNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILQNANAIR--PNLSEIHPWHLHGHDFWVLGRGEGKFTK 311 (396)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~vi~N~~~~~--~~~~~~HP~HLHG~~F~Vl~~g~g~~~~ 311 (396)
.+ .|..... .........++.++.|++|||+|+|.+.+. ......||||||||+||||++|.|.|+.
T Consensus 395 ---~~--~~~~~~~------~~~~~~~~~~~~~~~~~~V~ivi~n~~~~~~~~~~~~~HP~HlHGh~F~vlg~G~G~~~~ 463 (538)
T TIGR03390 395 ---TP--NYTAALA------NYGFDPETRAFPAKVGEVLEIVWQNTGSYTGPNGGVDTHPFHAHGRHFYDIGGGDGEYNA 463 (538)
T ss_pred ---CC--Ccccccc------cCCcCcCceEEEcCCCCEEEEEEECCcccccCCCCCCCCCeeecCCcEEEEcccccccCC
Confidence 00 0100000 000111345688899999999999964210 0014689999999999999999999975
Q ss_pred c-cccccCCCCCCccceEEeC----------CCcEEEEEEEcCCCeeeEEeecchhhhhcCcEEEEeecc
Q 016030 312 E-DEKKFNLKNPPLKNTAVIF----------PYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALGV 370 (396)
Q Consensus 312 ~-~~~~~n~~~p~~rDTv~vp----------~~g~~~irf~adnpG~w~~HCHi~~H~~~GM~~~~~~~~ 370 (396)
. +...+|+.||++|||+.|| ++||++|||++||||.|+|||||+||+.+||+++|.|+.
T Consensus 464 ~~~~~~~nl~nP~rRDTv~vp~~~~~~~~~~~~~~~~ir~~~dNPG~W~~HCHi~~H~~~Gm~~~~~~~~ 533 (538)
T TIGR03390 464 TANEAKLENYTPVLRDTTMLYRYAVKVVPGAPAGWRAWRIRVTNPGVWMMHCHILQHMVMGMQTVWVFGD 533 (538)
T ss_pred ccChhhhccCCCCeecceeeccccccccccCCCceEEEEEEcCCCeeEEEeccchhhhhccceEEEEeCC
Confidence 3 2345788999999999996 789999999999999999999999999999999998764
No 12
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=4.1e-60 Score=475.67 Aligned_cols=348 Identities=36% Similarity=0.599 Sum_probs=256.3
Q ss_pred CCCCCceEEEccCCCCCCccccccCCCCcccccccCCCCCCceEEEEcCCCeEEEEEEecCccceEEEEEeCceeEEEEe
Q 016030 7 SPQGHYVGLVSHRGQFNCSLAAHFSNGSAEQCKLRGNEQCAPQILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEA 86 (396)
Q Consensus 7 ~~~~~~s~LiNG~g~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~v~~G~~yRlRlINa~~~~~~~~sId~h~l~VIa~ 86 (396)
.|..-|++||||++.+. ..| .++++|+|||+|||||||+|....+.|+|+||+|+|||+
T Consensus 188 ~p~~~D~~~iNg~~g~~------------~~~---------~~~l~v~pGktY~lRiiN~g~~~~l~F~I~~H~ltvVe~ 246 (563)
T KOG1263|consen 188 LPNPSDGVLINGRSGFL------------YNC---------TPTLTVEPGKTYRLRIINAGLNTSLNFSIANHQLTVVEV 246 (563)
T ss_pred CCCCCCceEECCCCCcc------------cCc---------eeEEEEcCCCEEEEEEEccccccceEEEECCeEEEEEEe
Confidence 34447899999998542 122 268999999999999999999999999999999999999
Q ss_pred CCceeeeeEeceEEecCCceEEEEEeeCCCCCcceEEEEEecCCCC---CCCCcceEEEEccCCCCCCCC-CCCCCCCCC
Q 016030 87 DGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAGVRGRKP---ATPPALTLLNYHPTSASKIPL-SPPPITPRW 162 (396)
Q Consensus 87 DG~~v~P~~v~~l~i~~GqRyDVlv~~~~~~~~~y~ir~~~~~~~~---~~~~~~~il~y~~~~~~~~p~-~~~~~~~~~ 162 (396)
||.+++|..+++|.|+|||||||||+++|.++ +|||++....... ......++|+|.+........ ...+..+..
T Consensus 247 Dg~y~~p~~~~~l~i~~GQ~~~vLvtadq~~~-~Y~i~~~~~~~~~~~~~~~t~~~~l~y~~~~~~~s~~~~~~~~~~~~ 325 (563)
T KOG1263|consen 247 DGAYTKPFTTDSLDIHPGQTYSVLLTADQSPG-DYYIAASPYFDASNVPFNLTTTGILRYSGSTHPASEKLPIYPFLPPG 325 (563)
T ss_pred cceEEeeeeeceEEEcCCcEEEEEEeCCCCCC-cEEEEEEeeeccCCcceeeeEEEEEEEeCCcccCcccCcccccCCcc
Confidence 99999999999999999999999999999887 9999987654321 145678999997622111110 000111111
Q ss_pred CCCccccccccccccc----CCCCCCCCc-------cceEEEEeecccccCCeEEEEEcCccCcCCCCCchhhhhccCCC
Q 016030 163 DDYDHSKSFSNKIFAL----MGSPKPPTN-------FHRRLTLLNTQNTINGFTKWAINNVSLTLPPTPYLGSIKYGLKD 231 (396)
Q Consensus 163 ~~~~~~~~~~~~~~~~----~~~~~~~~~-------~~~~i~~~~~~~~~~g~~~~~iN~~s~~~p~~p~l~~~~~~~~~ 231 (396)
.+...+..+....... ...+.|... ..+.+.+.+.....++..+++||+.+|..|+.|.+.+..+...+
T Consensus 326 ~~~~~s~~~~~~~r~~~~~~~~~~~P~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~siN~isf~~P~tp~~l~~~~~~~~ 405 (563)
T KOG1263|consen 326 NDTAWSTYQARSIRSLLSASFARPVPQGSYHYGLITIGLTLKLCNSDNKNNGKLRASINNISFVTPKTPSLLAAYFKNIP 405 (563)
T ss_pred cCchhhhhhhhcccccccccCcccCCCccccccceeeeccEEeccCCCCCCcEEEEEEcceEEECCCCchhhhhhhccCC
Confidence 2222222222111111 111111111 11222333333344678899999999999999888777765554
Q ss_pred CCCCC----CCCCCCCCCCCCCCCCCCCCcccccceEEeecCCEEEEEEecCCCCCCCCCCCCCeeecCCceEEEeecCC
Q 016030 232 AFDQN----GPPENFSNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEG 307 (396)
Q Consensus 232 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~vi~N~~~~~~~~~~~HP~HLHG~~F~Vl~~g~g 307 (396)
.+..+ .|+..+. + ..++.++.++.++.++.||++|+|.+.. ....||||||||+|+||++|.|
T Consensus 406 ~~~~~d~p~~P~~~~~--~--------~~~~~~t~v~~~~~~~~veIVlqN~~~~---~~~~hp~HLHG~~F~Vvg~g~G 472 (563)
T KOG1263|consen 406 GYFTNDFPDKPPIKFD--Y--------TGPTLGTSVMKLEFNSFVEIVLQNTSTG---TQENHPNHLHGYNFYVVGYGFG 472 (563)
T ss_pred ccccCccCCCCccccC--C--------ccccccceEEEeecCCEEEEEEeCCccc---cCCCCccceeceEEEEEEeccc
Confidence 32211 1111111 0 0136788999999999999999998754 3567999999999999999999
Q ss_pred CCCc--ccccccCCCCCCccceEEeCCCcEEEEEEEcCCCeeeEEeecchhhhhcCcEEEEeecccc-----ccCCCCcc
Q 016030 308 KFTK--EDEKKFNLKNPPLKNTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALGVET-----VGNIPNQA 380 (396)
Q Consensus 308 ~~~~--~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adnpG~w~~HCHi~~H~~~GM~~~~~~~~~~-----~~~~P~~~ 380 (396)
.|++ +....+|+.+|+.||||.|+|+||++|||+|||||+|++|||+++|+..||.++|.|...+ +.++|++.
T Consensus 473 ~~~~~~d~~~~yNl~dp~~R~Tv~V~pggw~aIrf~adNPG~W~~HCHie~H~~~G~~~~f~V~~~~~~~~~~~~~P~~~ 552 (563)
T KOG1263|consen 473 NWDPAKDPRKKYNLVDPVSRDTVQVPPGGWTAIRFVADNPGVWLMHCHIEDHLYLGMETVFIVGNGEESLSSEYPPPKNL 552 (563)
T ss_pred ccCcCcChhhhcccCCCcccceEEeCCCCEEEEEEEcCCCcEEEEEEecHHHHhccCeEEEEEeCCCccCCcCCCCCCCc
Confidence 9998 3447899999999999999999999999999999999999999999999999999987432 33699999
Q ss_pred ccccccccc
Q 016030 381 LACGLTGKR 389 (396)
Q Consensus 381 ~~c~~~~~~ 389 (396)
+.||.-+..
T Consensus 553 ~~cg~~~~~ 561 (563)
T KOG1263|consen 553 PKCGRASGI 561 (563)
T ss_pred ccccccCCc
Confidence 999987654
No 13
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=100.00 E-value=1.4e-44 Score=368.20 Aligned_cols=250 Identities=26% Similarity=0.372 Sum_probs=174.6
Q ss_pred eEEEEcCCCeEEEEEEecCccceEEEEEeCceeEEEEeCCceeeeeEeceEEecCCceEEEEEeeCCCCCcceEEEEEec
Q 016030 49 QILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAGVR 128 (396)
Q Consensus 49 ~~~~v~~G~~yRlRlINa~~~~~~~~sId~h~l~VIa~DG~~v~P~~v~~l~i~~GqRyDVlv~~~~~~~~~y~ir~~~~ 128 (396)
.++.|++|++|||||||+|+.+.|+|+|++|+|+|||+||++|+|+.+++|.|++||||||||++++ . +.|+|++...
T Consensus 260 ~~~~v~~G~rvRLR~INas~~~~f~l~I~gh~m~VIa~DG~~v~Pv~vd~l~I~pGeRyDVlV~~~~-~-g~~~i~a~~~ 337 (587)
T TIGR01480 260 WTGLFRPGEKVRLRFINGSAMTYFDVRIPGLKLTVVAVDGQYVHPVSVDEFRIAPAETFDVIVEPTG-D-DAFTIFAQDS 337 (587)
T ss_pred ceEEECCCCEEEEEEEecCCCceEEEEECCCEEEEEEcCCcCcCceEeCeEEEcCcceeEEEEecCC-C-ceEEEEEEec
Confidence 4689999999999999999999999999999999999999999999999999999999999999864 3 4899998765
Q ss_pred CCCCCCCCcceEEEEccCCCCCCCCCCCCCCCCCCCCcc----------------------c-c-------c---c----
Q 016030 129 GRKPATPPALTLLNYHPTSASKIPLSPPPITPRWDDYDH----------------------S-K-------S---F---- 171 (396)
Q Consensus 129 ~~~~~~~~~~~il~y~~~~~~~~p~~~~~~~~~~~~~~~----------------------~-~-------~---~---- 171 (396)
+. ....+++|++........|...+.......++.. . . + .
T Consensus 338 ~~---~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (587)
T TIGR01480 338 DR---TGYARGTLAVRLGLTAPVPALDPRPLLTMKDMGMGGMHHGMDHSKMSMGGMPGMDMSMRAQSNAPMDHSQMAMDA 414 (587)
T ss_pred CC---CceEEEEEecCCCCCCCCCCCCCccccChhhcccccccccccccccccCcccccCccccccccccCccccccccc
Confidence 42 3456778887543222222211111011101000 0 0 0 0
Q ss_pred -----------------------------------ccccc--ccCCC---CCCCCccceEEEEeecccccCCeEEEEEcC
Q 016030 172 -----------------------------------SNKIF--ALMGS---PKPPTNFHRRLTLLNTQNTINGFTKWAINN 211 (396)
Q Consensus 172 -----------------------------------~~~~~--~~~~~---~~~~~~~~~~i~~~~~~~~~~g~~~~~iN~ 211 (396)
..+.+ ..... ..++...++++.+.-..+ + ....|+|||
T Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~p~r~~~~~L~g~-m-~~~~wtiNG 492 (587)
T TIGR01480 415 SPKHPASEPLNPLVDMIVDMPMDRMDDPGIGLRDNGRRVLTYADLHSLFPPPDGRAPGREIELHLTGN-M-ERFAWSFDG 492 (587)
T ss_pred cccCcccccCCccccccccCcccccCCCCcccccCCcceeehhhccccccccCcCCCCceEEEEEcCC-C-ceeEEEECC
Confidence 00000 00000 000112233333211110 1 134588888
Q ss_pred ccCcCCCCCchhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccceEEeecCCEEEEEEecCCCCCCCCCCCCC
Q 016030 212 VSLTLPPTPYLGSIKYGLKDAFDQNGPPENFSNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILQNANAIRPNLSEIHP 291 (396)
Q Consensus 212 ~s~~~p~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~vi~N~~~~~~~~~~~HP 291 (396)
..|.. ...+.++.|++|+|+|.|.+ .+.||
T Consensus 493 ~~~~~--------------------------------------------~~pl~v~~Gervri~l~N~t------~~~Hp 522 (587)
T TIGR01480 493 EAFGL--------------------------------------------KTPLRFNYGERLRVVLVNDT------MMAHP 522 (587)
T ss_pred ccCCC--------------------------------------------CCceEecCCCEEEEEEECCC------CCCcc
Confidence 76531 01256899999999999976 46999
Q ss_pred eeecCCceEEEeecCCCCCcccccccCCCCCCccceEEeCCCcEEEEEEEcCCCeeeEEeecchhhhhcCcEEEEee
Q 016030 292 WHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLAL 368 (396)
Q Consensus 292 ~HLHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adnpG~w~~HCHi~~H~~~GM~~~~~~ 368 (396)
||||||.|+|+..+ |.+ +++|||+.|+|++++.++|++||||.|+||||++.|++.||+..|.+
T Consensus 523 mHlHG~~f~v~~~~-G~~------------~~~~dTv~V~Pg~t~~~~f~ad~pG~w~~HCH~l~H~~~GM~~~~~v 586 (587)
T TIGR01480 523 IHLHGMWSELEDGQ-GEF------------QVRKHTVDVPPGGKRSFRVTADALGRWAYHCHMLLHMEAGMFREVTV 586 (587)
T ss_pred eeEcCceeeeecCC-Ccc------------cccCCceeeCCCCEEEEEEECCCCeEEEEcCCCHHHHhCcCcEEEEe
Confidence 99999999988653 333 46899999999999999999999999999999999999999999865
No 14
>PRK10883 FtsI repressor; Provisional
Probab=100.00 E-value=3.7e-43 Score=352.06 Aligned_cols=232 Identities=16% Similarity=0.161 Sum_probs=155.5
Q ss_pred EEEEcCCCeEEEEEEecCccceEEEEE-eCceeEEEEeCCcee-eeeEeceEEecCCceEEEEEeeCCCCCcceEEEEEe
Q 016030 50 ILHVQPNKTYRLRIASTTALASLNLAV-KNHKMVVVEADGNYV-QPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAGV 127 (396)
Q Consensus 50 ~~~v~~G~~yRlRlINa~~~~~~~~sI-d~h~l~VIa~DG~~v-~P~~v~~l~i~~GqRyDVlv~~~~~~~~~y~ir~~~ 127 (396)
.++|++| +|||||||+|+.+.|.|+| |+|+|+|||+||+++ +|+.+++|.|+|||||||+|++++ ++.+.+.+..
T Consensus 221 ~~~v~~~-~~RlRliNas~~~~~~l~l~d~~~~~vIa~DGg~~~~P~~~~~l~l~pGeR~dvlVd~~~--~~~~~l~~~~ 297 (471)
T PRK10883 221 YVEVSRG-WVRLRLLNASNARRYQLQMSDGRPLHVIAGDQGFLPAPVSVKQLSLAPGERREILVDMSN--GDEVSITAGE 297 (471)
T ss_pred eEEecCC-EEEEEEEEccCCceEEEEEcCCCeEEEEEeCCCcccCCcEeCeEEECCCCeEEEEEECCC--CceEEEECCC
Confidence 6889885 7999999999999999999 899999999998776 899999999999999999999976 3366665521
Q ss_pred cCCCCCC------C----CcceEEEEccCCCCCCCCCCCCCCCCCCCCcccccccccccccCCCCCCCCccceEEEEeec
Q 016030 128 RGRKPAT------P----PALTLLNYHPTSASKIPLSPPPITPRWDDYDHSKSFSNKIFALMGSPKPPTNFHRRLTLLNT 197 (396)
Q Consensus 128 ~~~~~~~------~----~~~~il~y~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 197 (396)
....... . ....+++....... +. .... ....+... +.......++..+...
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-------~~~~------~p~~l~~~---~~~~~~~~~~~~~~l~ 359 (471)
T PRK10883 298 AAGIVDRLRGFFEPSSILVSTLVLTLRPTGLL--PL-------VTDN------LPMRLLPD---EIMEGSPIRSREISLG 359 (471)
T ss_pred ccccccccccccCCccccccceeEEEEccccc--cC-------CCCc------CChhhcCC---CCCCCCCcceEEEEec
Confidence 1100000 0 01122232211000 00 0000 00000000 0011111222222111
Q ss_pred ccccCCeEEEEEcCccCcCCCCCchhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccceEEeecCCEEEEEEe
Q 016030 198 QNTINGFTKWAINNVSLTLPPTPYLGSIKYGLKDAFDQNGPPENFSNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILQ 277 (396)
Q Consensus 198 ~~~~~g~~~~~iN~~s~~~p~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~vi~ 277 (396)
+ ..|.|||..|..... .+.++.|++++|+|.
T Consensus 360 -----~-~~~~INg~~~~~~~~-------------------------------------------~~~~~~g~~e~W~~~ 390 (471)
T PRK10883 360 -----D-DLPGINGALWDMNRI-------------------------------------------DVTAQQGTWERWTVR 390 (471)
T ss_pred -----C-CcCccCCcccCCCcc-------------------------------------------eeecCCCCEEEEEEE
Confidence 1 136799988753210 146789999999998
Q ss_pred cCCCCCCCCCCCCCeeecCCceEEEeecCCCCCcccccccCCCCCCccceEEeCCCcEEEEEEEcCCCe----eeEEeec
Q 016030 278 NANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVADNPG----AWAFHCH 353 (396)
Q Consensus 278 N~~~~~~~~~~~HP~HLHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adnpG----~w~~HCH 353 (396)
|. +.|||||||+.|||+++++.... ..+..|||||.|+ +.+.|+++.+++| .||||||
T Consensus 391 n~--------~~HP~HlHg~~FqVl~~~G~~~~--------~~~~gwkDTV~v~--~~v~i~~~f~~~~~~~~~~m~HCH 452 (471)
T PRK10883 391 AD--------MPQAFHIEGVMFLIRNVNGAMPF--------PEDRGWKDTVWVD--GQVELLVYFGQPSWAHFPFLFYSQ 452 (471)
T ss_pred CC--------CCcCEeECCccEEEEEecCCCCC--------ccccCcCcEEEcC--CeEEEEEEecCCCCCCCcEEeecc
Confidence 84 48999999999999999654321 1124799999996 4699999999887 8999999
Q ss_pred chhhhhcCcEEEEeec
Q 016030 354 IEPHFHIGMGVVLALG 369 (396)
Q Consensus 354 i~~H~~~GM~~~~~~~ 369 (396)
|++|+|.|||.+|.|-
T Consensus 453 iLeHeD~GMM~~~~V~ 468 (471)
T PRK10883 453 TLEMADRGSIGQLLVN 468 (471)
T ss_pred cccccccCCccCeEEe
Confidence 9999999999999774
No 15
>PRK10965 multicopper oxidase; Provisional
Probab=100.00 E-value=9.1e-43 Score=352.31 Aligned_cols=241 Identities=22% Similarity=0.330 Sum_probs=157.1
Q ss_pred EEEEcCCCeEEEEEEecCccceEEEEE-eCceeEEEEeCCcee-eeeEeceEEecCCceEEEEEeeCCCCCcceEEEEEe
Q 016030 50 ILHVQPNKTYRLRIASTTALASLNLAV-KNHKMVVVEADGNYV-QPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAGV 127 (396)
Q Consensus 50 ~~~v~~G~~yRlRlINa~~~~~~~~sI-d~h~l~VIa~DG~~v-~P~~v~~l~i~~GqRyDVlv~~~~~~~~~y~ir~~~ 127 (396)
.+.+ ++++|||||||+|+.+.|+|++ |+|+|+|||+||+++ +|+.+++|.|+|||||||+|++++ +++|++++..
T Consensus 224 ~~~v-~~~~~RlRliNas~~r~~~l~~~dg~~~~vIa~DG~~l~~P~~v~~l~lapGeR~dvlv~~~~--~~~~~l~~~~ 300 (523)
T PRK10965 224 QHAA-PRGWLRLRLLNGCNARSLNLATSDGRPLYVIASDGGLLAEPVKVSELPILMGERFEVLVDTSD--GKAFDLVTLP 300 (523)
T ss_pred eeec-CCCEEEEEEEeccCCceEEEEEcCCceEEEEEeCCCcccCccEeCeEEECccceEEEEEEcCC--CceEEEEEec
Confidence 4556 4679999999999999999998 899999999999997 899999999999999999999976 3489988753
Q ss_pred cCCCC----CCCCcceEEEEccCCCCCCCCCCCCCCC-CCCCCcccccccccccccCCCCCCCCccceEEEEeecc----
Q 016030 128 RGRKP----ATPPALTLLNYHPTSASKIPLSPPPITP-RWDDYDHSKSFSNKIFALMGSPKPPTNFHRRLTLLNTQ---- 198 (396)
Q Consensus 128 ~~~~~----~~~~~~~il~y~~~~~~~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---- 198 (396)
..... .......++++....... +. ..|... ..... +.+.....+++.+....
T Consensus 301 ~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~-~~P~~l~~~~~~----------------~~~~~~~~r~~~l~~~~~~~~ 362 (523)
T PRK10965 301 VSQMGMALAPFDKPLPVLRIQPLLISA-SG-TLPDSLASLPAL----------------PSLEGLTVRRLQLSMDPRLDM 362 (523)
T ss_pred ccCcccccccCCCceeEEEEeccCcCC-CC-cCChhhccCCCC----------------CcccccceeEEEEeeccccch
Confidence 32110 011134556654321110 00 011000 00000 00000011122111000
Q ss_pred ------------------------ccc---------C-----C--e---EEEEEcCccCcCCCCCchhhhhccCCCCCCC
Q 016030 199 ------------------------NTI---------N-----G--F---TKWAINNVSLTLPPTPYLGSIKYGLKDAFDQ 235 (396)
Q Consensus 199 ------------------------~~~---------~-----g--~---~~~~iN~~s~~~p~~p~l~~~~~~~~~~~~~ 235 (396)
..+ . + . ..|+|||.+|...
T Consensus 363 ~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ING~~~~~~------------------ 424 (523)
T PRK10965 363 MGMQMLMEKYGDQAMAGMDMDHMMGHMGHGNMDHMNHGAADAGPAFDFHHANKINGKAFDMN------------------ 424 (523)
T ss_pred hhhhhccccccccccccccccccccccccccccccccccccccccccccccccCCCeECCCC------------------
Confidence 000 0 0 0 1145666655321
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcccccceEEeecCCEEEEEEecCCCCCCCCCCCCCeeecCCceEEEeecCCCCCccccc
Q 016030 236 NGPPENFSNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEK 315 (396)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~vi~N~~~~~~~~~~~HP~HLHG~~F~Vl~~g~g~~~~~~~~ 315 (396)
...+.++.|++++|+|.|.+. .+.|||||||++||||+++..+..
T Consensus 425 -------------------------~~~~~~~~G~~e~w~i~N~~~-----~~~Hp~HlHg~~F~Vl~~~g~~~~----- 469 (523)
T PRK10965 425 -------------------------KPMFAAKKGQYERWVISGVGD-----MMLHPFHIHGTQFRILSENGKPPA----- 469 (523)
T ss_pred -------------------------CcceecCCCCEEEEEEEeCCC-----CCccCeEEeCcEEEEEEecCCCCC-----
Confidence 112567999999999999752 258999999999999999653321
Q ss_pred ccCCCCCCccceEEeCCCcEEEE--EEE--cCCCeeeEEeecchhhhhcCcEEEEee
Q 016030 316 KFNLKNPPLKNTAVIFPYGWTAL--RFV--ADNPGAWAFHCHIEPHFHIGMGVVLAL 368 (396)
Q Consensus 316 ~~n~~~p~~rDTv~vp~~g~~~i--rf~--adnpG~w~~HCHi~~H~~~GM~~~~~~ 368 (396)
...+.|||||.|++ +.+.| +|. ++++|.|||||||++|+|.|||.+|.|
T Consensus 470 ---~~~~~wkDTv~v~~-~~~~i~~~f~~~~~~~g~~~~HCHiL~Hed~GMM~~~~V 522 (523)
T PRK10965 470 ---AHRAGWKDTVRVEG-GRSEVLVKFDHDAPKEHAYMAHCHLLEHEDTGMMLGFTV 522 (523)
T ss_pred ---ccccccccEEEECC-cEEEEEEEecCCCCCCCCEEEEeCchhhhccCccceeEe
Confidence 12468999999988 55544 454 467889999999999999999999975
No 16
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=2.9e-35 Score=295.92 Aligned_cols=248 Identities=26% Similarity=0.379 Sum_probs=158.8
Q ss_pred EEEcCCCeEEEEEEecCccceEEEEEeCceeEEEEeCCceeeeeEeceEEecCCceEEEEEeeCCCCCcceEEEEEecCC
Q 016030 51 LHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAGVRGR 130 (396)
Q Consensus 51 ~~v~~G~~yRlRlINa~~~~~~~~sId~h~l~VIa~DG~~v~P~~v~~l~i~~GqRyDVlv~~~~~~~~~y~ir~~~~~~ 130 (396)
+...++.+|||||+|+++.+.+.+++.+++|+||++||.+++|..++.+.|+|||||||+++++. ++.|.+++.. ..
T Consensus 201 ~~~~~~g~~rlRl~n~~~~~~~~~~~~~~~~~Vi~~DG~~v~~~~~d~~~l~p~er~~v~v~~~~--~~~~~l~~~~-~~ 277 (451)
T COG2132 201 FKAVPGGVVRLRLLNAGNARTYHLALGGGPLTVIAVDGGPLPPVSVDELYLAPGERYEVLVDMND--GGAVTLTALG-ED 277 (451)
T ss_pred eeecCCCeEEEEEEecCCceEEEEEecCceEEEEEeCCcCcCceeeeeEEecCcceEEEEEEcCC--CCeEEEEecc-cc
Confidence 44445555999999999989999999999999999999999889999999999999999999987 3477776544 11
Q ss_pred CCCCCCcceEEEEccCCCCCCCCCCCCCCCCCCCC-cccccccccccccCCCCCCCCccceEEEEeecccccCCeEEEEE
Q 016030 131 KPATPPALTLLNYHPTSASKIPLSPPPITPRWDDY-DHSKSFSNKIFALMGSPKPPTNFHRRLTLLNTQNTINGFTKWAI 209 (396)
Q Consensus 131 ~~~~~~~~~il~y~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~i 209 (396)
... ...+.+..........+...........+. .... ........ ..+....+....+.. ..+...|.+
T Consensus 278 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~~~~~--~~~~~~~~~~~~l~~----~~~~~~~~~ 347 (451)
T COG2132 278 MPD--TLKGFRAPNPILTPSYPVLNGRVGAPTGDMADHAP--VGLLVTIL--VEPGPNRDTDFHLIG----GIGGYVWAI 347 (451)
T ss_pred CCc--eeeeeeccccccccccccccccccCCCcchhhccc--cccchhhc--CCCcccccccchhhc----ccccccccc
Confidence 111 111111110000000000000000000000 0000 00000000 000000011111100 011234666
Q ss_pred cCccCcCCCCCchhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccceEEeecCCEEEEEEecCCCCCCCCCCC
Q 016030 210 NNVSLTLPPTPYLGSIKYGLKDAFDQNGPPENFSNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILQNANAIRPNLSEI 289 (396)
Q Consensus 210 N~~s~~~p~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~vi~N~~~~~~~~~~~ 289 (396)
|+..|... ...+.++.|++++|+|.|.+ .+.
T Consensus 348 n~~~~~~~-------------------------------------------~~~~~~~~G~~~~~~i~n~~------~~~ 378 (451)
T COG2132 348 NGKAFDDN-------------------------------------------RVTLIAKAGTRERWVLTNDT------PMP 378 (451)
T ss_pred cCccCCCC-------------------------------------------cCceeecCCCEEEEEEECCC------CCc
Confidence 66554320 12367789999999999986 369
Q ss_pred CCeeecCCceEEEeecCCCCCcccccccCCCCCCccceEEeCCCcEEEEEEEcCCCeeeEEeecchhhhhcCcEEEEeec
Q 016030 290 HPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALG 369 (396)
Q Consensus 290 HP~HLHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adnpG~w~~HCHi~~H~~~GM~~~~~~~ 369 (396)
|||||||+.|+|++.+. . .-...+.||||+.+.++..++|+|++++||.|+||||+++|++.|||..+.+.
T Consensus 379 HP~HlHg~~F~v~~~~~-~--------~~~~~~~~kDTv~v~~~~~~~v~~~a~~~g~~~~HCH~l~H~~~Gm~~~~~v~ 449 (451)
T COG2132 379 HPFHLHGHFFQVLSGDA-P--------APGAAPGWKDTVLVAPGERLLVRFDADYPGPWMFHCHILEHEDNGMMGQFGVV 449 (451)
T ss_pred cCeEEcCceEEEEecCC-C--------cccccCccceEEEeCCCeEEEEEEeCCCCCceEEeccchhHhhcCCeeEEEec
Confidence 99999999999999871 1 11234689999999999999999999999999999999999999999998764
No 17
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=99.97 E-value=9.9e-32 Score=227.63 Aligned_cols=108 Identities=43% Similarity=0.801 Sum_probs=97.2
Q ss_pred ccccceEEeecCCEEEEEEecCCCCCCCCCCCCCeeecCCceEEEeecCCCCCcccccccCCCCCCccceEEeCCCcEEE
Q 016030 258 TLGSGVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTA 337 (396)
Q Consensus 258 ~~~~~~~~~~~g~~v~~vi~N~~~~~~~~~~~HP~HLHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~ 337 (396)
..+...+.++.|++++|+|+|.+ ...|||||||++|+|++++.+.++......+++.+|.||||+.|+++++++
T Consensus 30 ~~~~~~~~~~~g~~v~~~l~N~~------~~~Hp~HlHG~~F~vl~~~~~~~~~~~~~~~~~~~~~~~DTv~v~~~~~~~ 103 (138)
T PF07731_consen 30 FGNTPVIEVKNGDVVEIVLQNNG------SMPHPFHLHGHSFQVLGRGGGPWNPDDTQSYNPENPGWRDTVLVPPGGWVV 103 (138)
T ss_dssp SSTTSEEEEETTSEEEEEEEECT------TSSEEEEETTSEEEEEEETTEESTTHCGGCCCSSSSSEESEEEEETTEEEE
T ss_pred CCCcceEEEeCCCEEEEEEECCC------CCccceEEEeeEEEeeecCCcccccccccccccccCcccccccccceeEEE
Confidence 34567899999999999999975 459999999999999999988776555667889999999999999999999
Q ss_pred EEEEcCCCeeeEEeecchhhhhcCcEEEEeeccc
Q 016030 338 LRFVADNPGAWAFHCHIEPHFHIGMGVVLALGVE 371 (396)
Q Consensus 338 irf~adnpG~w~~HCHi~~H~~~GM~~~~~~~~~ 371 (396)
|||+++|||.|+|||||++|++.|||++|.|.++
T Consensus 104 i~~~~~~~G~w~~HCHi~~H~~~GM~~~~~v~~~ 137 (138)
T PF07731_consen 104 IRFRADNPGPWLFHCHILEHEDNGMMAVFVVGPQ 137 (138)
T ss_dssp EEEEETSTEEEEEEESSHHHHHTT-EEEEEECHH
T ss_pred EEEEeecceEEEEEEchHHHHhCCCeEEEEEcCC
Confidence 9999999999999999999999999999998763
No 18
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=99.96 E-value=1.4e-28 Score=213.19 Aligned_cols=123 Identities=35% Similarity=0.639 Sum_probs=103.2
Q ss_pred CCCCceEEEccCCCCCCccccccCCCCcccccccCCCCCCceEEEEcCCCeEEEEEEecCccceEEEEEeCceeEEEEeC
Q 016030 8 PQGHYVGLVSHRGQFNCSLAAHFSNGSAEQCKLRGNEQCAPQILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEAD 87 (396)
Q Consensus 8 ~~~~~s~LiNG~g~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~v~~G~~yRlRlINa~~~~~~~~sId~h~l~VIa~D 87 (396)
|...+++||||+|+++|..... .....+.++|++|++|||||||+|+.+.+.|+|+||+|+|||+|
T Consensus 33 ~~~~d~~liNG~~~~~~~~~~~--------------~~~~~~~~~v~~g~~~rlRliNa~~~~~~~~~i~gh~~~Via~D 98 (159)
T PF00394_consen 33 PPIPDSILINGKGRFDCSSADY--------------TGGEPPVIKVKPGERYRLRLINAGASTSFNFSIDGHPMTVIAAD 98 (159)
T ss_dssp TSSCSEEEETTBTCBTTCTTGS--------------TTSTSGEEEEETTTEEEEEEEEESSS-BEEEEETTBCEEEEEET
T ss_pred CcCCcEEEECCccccccccccc--------------cccccceEEEcCCcEEEEEEEeccCCeeEEEEeeccceeEeeec
Confidence 6778899999999999975421 23445799999999999999999999999999999999999999
Q ss_pred CceeeeeEeceEEecCCceEEEEEeeCCCCCcceEEEEEecCC---CCCCCCcceEEEEcc
Q 016030 88 GNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAGVRGR---KPATPPALTLLNYHP 145 (396)
Q Consensus 88 G~~v~P~~v~~l~i~~GqRyDVlv~~~~~~~~~y~ir~~~~~~---~~~~~~~~~il~y~~ 145 (396)
|.+++|+.+++|.|++||||||||++++. .++|||++..... ......+.|+|+|.+
T Consensus 99 G~~v~p~~~~~l~l~~G~R~dvlv~~~~~-~g~y~i~~~~~~~~~~~~~~~~~~aiL~Y~~ 158 (159)
T PF00394_consen 99 GVPVEPYKVDTLVLAPGQRYDVLVTADQP-PGNYWIRASYQHDSINDPQNGNALAILRYDG 158 (159)
T ss_dssp TEEEEEEEESBEEE-TTEEEEEEEEECSC-SSEEEEEEEESSSSSHSHGGGTTEEEEEETT
T ss_pred cccccccccceEEeeCCeEEEEEEEeCCC-CCeEEEEEecccCCCccCCCcEEEEEEEECC
Confidence 99999999999999999999999999985 4599999963221 123456889999964
No 19
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=99.62 E-value=6.9e-16 Score=147.40 Aligned_cols=93 Identities=14% Similarity=0.031 Sum_probs=78.1
Q ss_pred EEEEcCCCeEEEEEEecCccceEEEEEeCceeEEEEeCCceeeee--EeceEEecCCceEEEEEeeCCCCCcceEEEEEe
Q 016030 50 ILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGNYVQPF--EVDDMDIYSGESYSVLLTTNQDPSYNYWISAGV 127 (396)
Q Consensus 50 ~~~v~~G~~yRlRlINa~~~~~~~~sId~h~l~VIa~DG~~v~P~--~v~~l~i~~GqRyDVlv~~~~~~~~~y~ir~~~ 127 (396)
.+++++|+++||||||++..+.+.|++.+|.+++|+.||+++.|. .++.+.|+|||||||+|++++ +| .|+++...
T Consensus 203 ~~~v~~G~~~RlRiiNa~~~~~~~~~~~g~~~~~v~~DG~~~~~~~~~~~~~~i~PG~R~dv~v~~~~-pG-~y~~~~~~ 280 (311)
T TIGR02376 203 DNALTAGVGERVLFVHSQPNRDSRPHLIGGHGDYVWVTGKFANPPNRDVETWFIPGGSAAAALYTFEQ-PG-VYAYVDHN 280 (311)
T ss_pred CcccccCCcEEEEEEcCCCCCCCCCeEecCCceEEEECCcccCCCCCCcceEEECCCceEEEEEEeCC-Ce-EEEEECcH
Confidence 368999999999999999999999999999999999999999764 489999999999999999997 44 89998764
Q ss_pred cCCCCCCCCcceEEEEcc
Q 016030 128 RGRKPATPPALTLLNYHP 145 (396)
Q Consensus 128 ~~~~~~~~~~~~il~y~~ 145 (396)
..... .....++|.|.+
T Consensus 281 ~~~~~-~~g~~~~i~~~g 297 (311)
T TIGR02376 281 LIEAF-EKGAAAQVKVEG 297 (311)
T ss_pred HHHHH-hCCCEEEEEECC
Confidence 43211 223678999864
No 20
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=99.43 E-value=3.9e-11 Score=114.81 Aligned_cols=89 Identities=18% Similarity=0.082 Sum_probs=74.1
Q ss_pred EeecCCEEEEEEecCCCCCCCCCCCCCeeecCCceEEEeecCCCCCcccccccCCCCCC--ccceEEeCCCcEEEEEEEc
Q 016030 265 MLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPP--LKNTAVIFPYGWTALRFVA 342 (396)
Q Consensus 265 ~~~~g~~v~~vi~N~~~~~~~~~~~HP~HLHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~--~rDTv~vp~~g~~~irf~a 342 (396)
.++.|++++|.|.|.+. ...+.||++|++|+++...++.. +++ ..|++.|.||+.+.|.|++
T Consensus 205 ~v~~G~~~RlRiiNa~~-----~~~~~~~~~g~~~~~v~~DG~~~-----------~~~~~~~~~~~i~PG~R~dv~v~~ 268 (311)
T TIGR02376 205 ALTAGVGERVLFVHSQP-----NRDSRPHLIGGHGDYVWVTGKFA-----------NPPNRDVETWFIPGGSAAAALYTF 268 (311)
T ss_pred ccccCCcEEEEEEcCCC-----CCCCCCeEecCCceEEEECCccc-----------CCCCCCcceEEECCCceEEEEEEe
Confidence 56789999999999862 34689999999999999843332 222 3799999999999999999
Q ss_pred CCCeeeEEeecchhhh-hcCcEEEEeec
Q 016030 343 DNPGAWAFHCHIEPHF-HIGMGVVLALG 369 (396)
Q Consensus 343 dnpG~w~~HCHi~~H~-~~GM~~~~~~~ 369 (396)
+.||.|++|||...|. ..|++.++.+.
T Consensus 269 ~~pG~y~~~~~~~~~~~~~g~~~~i~~~ 296 (311)
T TIGR02376 269 EQPGVYAYVDHNLIEAFEKGAAAQVKVE 296 (311)
T ss_pred CCCeEEEEECcHHHHHHhCCCEEEEEEC
Confidence 9999999999999997 67998888653
No 21
>PLN02604 oxidoreductase
Probab=99.03 E-value=2.4e-09 Score=110.57 Aligned_cols=89 Identities=24% Similarity=0.312 Sum_probs=68.3
Q ss_pred eEEeecCCEEEEEEecCCCCCCCCCCCCCeeecCCceEEEeecCCCCCcccccccCCCCCCccceEEeCCCcEEEEEEEc
Q 016030 263 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 342 (396)
Q Consensus 263 ~~~~~~g~~v~~vi~N~~~~~~~~~~~HP~HLHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~a 342 (396)
.++++.|+++++.+.|... ...|+||+||+.. .+. .|. | ..+......|+||+...++|++
T Consensus 56 ~i~~~~Gd~v~v~v~N~l~-----~~~~~iH~HG~~~--~~~---~~~--D-------G~~~~tq~~i~pg~s~~y~f~~ 116 (566)
T PLN02604 56 TILAQQGDTVIVELKNSLL-----TENVAIHWHGIRQ--IGT---PWF--D-------GTEGVTQCPILPGETFTYEFVV 116 (566)
T ss_pred cEEEECCCEEEEEEEeCCC-----CCCCCEEeCCCCC--CCC---ccc--c-------CCCccccCccCCCCeEEEEEEc
Confidence 4788999999999999631 3579999999942 111 010 0 0112244578999999999999
Q ss_pred CCCeeeEEeecchhhhhcCcEEEEeecc
Q 016030 343 DNPGAWAFHCHIEPHFHIGMGVVLALGV 370 (396)
Q Consensus 343 dnpG~w~~HCHi~~H~~~GM~~~~~~~~ 370 (396)
+++|.|.||||...|.+.||+..|.+.+
T Consensus 117 ~~~Gt~wyH~H~~~q~~~Gl~G~liV~~ 144 (566)
T PLN02604 117 DRPGTYLYHAHYGMQREAGLYGSIRVSL 144 (566)
T ss_pred CCCEEEEEeeCcHHHHhCCCeEEEEEEe
Confidence 9999999999999999999998887754
No 22
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=98.76 E-value=4.6e-08 Score=79.99 Aligned_cols=91 Identities=18% Similarity=0.143 Sum_probs=67.5
Q ss_pred cceEEeecCCEEEEEEecCCCCCCCCCCCCCeeecCCceEEEeecCCCCCcccccccCCCCCCccceEEeCCCcEEEEEE
Q 016030 261 SGVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRF 340 (396)
Q Consensus 261 ~~~~~~~~g~~v~~vi~N~~~~~~~~~~~HP~HLHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf 340 (396)
.++++++.|+.+++.+.|.. ..++.+|+||...---...+|.. ... .-.|.||+..+.+|
T Consensus 25 GPtI~v~~Gd~v~i~~~N~l------~~~~siH~HG~~~~~~~~~DG~~-------~~~-------~~~i~pG~~~~Y~~ 84 (117)
T PF07732_consen 25 GPTIRVREGDTVRITVTNNL------DEPTSIHWHGLHQPPSPWMDGVP-------GVT-------QCPIAPGESFTYEF 84 (117)
T ss_dssp EEEEEEETTEEEEEEEEEES------SSGBSEEEETSBSTTGGGGSGGT-------TTS-------GSSBSTTEEEEEEE
T ss_pred CCEEEEEcCCeeEEEEEecc------ccccccccceeeeeeeeecCCcc-------ccc-------ceeEEeecceeeeE
Confidence 35789999999999999964 45889999997642100011110 000 12378899999999
Q ss_pred EcCC-CeeeEEeecchhhhhcCcEEEEeeccc
Q 016030 341 VADN-PGAWAFHCHIEPHFHIGMGVVLALGVE 371 (396)
Q Consensus 341 ~adn-pG~w~~HCHi~~H~~~GM~~~~~~~~~ 371 (396)
+++. +|.|.||||...|...||...|++.++
T Consensus 85 ~~~~~~Gt~wYH~H~~~~~~~GL~G~~iV~~~ 116 (117)
T PF07732_consen 85 TANQQAGTYWYHSHVHGQQVMGLYGAIIVEPP 116 (117)
T ss_dssp EESSCSEEEEEEECSTTHHHTTEEEEEEEE-T
T ss_pred eeeccccceeEeeCCCchhcCcCEEEEEEcCC
Confidence 9988 999999999999988999988887654
No 23
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=98.59 E-value=6.1e-06 Score=85.18 Aligned_cols=76 Identities=20% Similarity=0.198 Sum_probs=63.3
Q ss_pred eEEeecCCEEEEEEecCCCCCCCCCCCCCeeecCCceEEEeecCCCCCcccccccCCCCCCccceEEeCCCcEEEEEEEc
Q 016030 263 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 342 (396)
Q Consensus 263 ~~~~~~g~~v~~vi~N~~~~~~~~~~~HP~HLHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~a 342 (396)
.+.++.|++++|.|.|.+. ...+-|||+||.|+||+..+ .+ ..|...|++.|.+|+.+.|.+++
T Consensus 188 ~i~v~~G~~~RlRlINa~~-----~~~~~~~idgH~~~VIa~DG-~~----------~~P~~~~~l~i~~GqRydVlv~a 251 (539)
T TIGR03389 188 KLTVEPGKTYLLRIINAAL-----NDELFFAIANHTLTVVEVDA-TY----------TKPFKTKTIVIGPGQTTNVLLTA 251 (539)
T ss_pred EEEECCCCEEEEEEEeccC-----CceEEEEECCCeEEEEEeCC-cc----------cCceEeCeEEecCCCEEEEEEEC
Confidence 5788999999999999863 34688999999999999853 22 35778899999999999999999
Q ss_pred CC-CeeeEEeecc
Q 016030 343 DN-PGAWAFHCHI 354 (396)
Q Consensus 343 dn-pG~w~~HCHi 354 (396)
++ +|.|.++-+.
T Consensus 252 ~~~~g~y~i~~~~ 264 (539)
T TIGR03389 252 DQSPGRYFMAARP 264 (539)
T ss_pred CCCCceEEEEEec
Confidence 86 7988876543
No 24
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=98.52 E-value=4.8e-07 Score=93.26 Aligned_cols=90 Identities=24% Similarity=0.251 Sum_probs=67.9
Q ss_pred ceEEeecCCEEEEEEecCCCCCCCCCCCCCeeecCCceEEEeecCCCCCcccccccCCCCCCccceEEeCCCcEEEEEEE
Q 016030 262 GVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFV 341 (396)
Q Consensus 262 ~~~~~~~g~~v~~vi~N~~~~~~~~~~~HP~HLHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~ 341 (396)
+.++++.|+.++|.+.|.- ....+.||+||.+. .+. .|. | ..+.-..-.|+||+....+|+
T Consensus 32 P~i~~~~Gd~v~v~v~N~l-----~~~~t~iHwHGl~~--~~~---~~~--D-------G~~~vtq~~I~PG~s~~y~f~ 92 (541)
T TIGR03388 32 PTIRAQAGDTIVVELTNKL-----HTEGVVIHWHGIRQ--IGT---PWA--D-------GTAGVTQCAINPGETFIYNFV 92 (541)
T ss_pred CeEEEEcCCEEEEEEEECC-----CCCCccEEecCcCC--cCC---ccc--C-------CCCccccCCcCCCCEEEEEEE
Confidence 5689999999999999963 12479999999952 111 110 0 001112235889999999999
Q ss_pred cCCCeeeEEeecchhhhhcCcEEEEeecc
Q 016030 342 ADNPGAWAFHCHIEPHFHIGMGVVLALGV 370 (396)
Q Consensus 342 adnpG~w~~HCHi~~H~~~GM~~~~~~~~ 370 (396)
++++|.|.||||...|...||...|++.+
T Consensus 93 ~~~~Gt~wyH~H~~~q~~~Gl~G~liV~~ 121 (541)
T TIGR03388 93 VDRPGTYFYHGHYGMQRSAGLYGSLIVDV 121 (541)
T ss_pred cCCCEEEEEEecchHHhhccceEEEEEec
Confidence 99999999999999999999998887764
No 25
>PLN02835 oxidoreductase
Probab=98.40 E-value=2.4e-05 Score=80.49 Aligned_cols=73 Identities=10% Similarity=0.071 Sum_probs=59.2
Q ss_pred eEEeecCCEEEEEEecCCCCCCCCCCCCCeeecCCceEEEeecCCCCCcccccccCCCCCCccceEEeCCCcEEEEEEEc
Q 016030 263 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 342 (396)
Q Consensus 263 ~~~~~~g~~v~~vi~N~~~~~~~~~~~HP~HLHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~a 342 (396)
.+.++.|++++|.|.|.+. ...+-||+.||.|+|++..+... .|...|++.|.+|+..-|-+++
T Consensus 203 ~~~v~~G~~yRlRliNa~~-----~~~~~f~i~gH~~~VI~~DG~~v-----------~p~~~~~l~i~~GqRydvlv~~ 266 (539)
T PLN02835 203 TFSGDQGKTYMFRISNVGL-----STSLNFRIQGHTMKLVEVEGSHT-----------IQNIYDSLDVHVGQSVAVLVTL 266 (539)
T ss_pred eEEECCCCEEEEEEEEcCC-----CccEEEEECCCEEEEEEECCccC-----------CCceeeEEEECcCceEEEEEEc
Confidence 3678999999999999874 35799999999999999854322 3567899999999999999998
Q ss_pred CC-CeeeEEe
Q 016030 343 DN-PGAWAFH 351 (396)
Q Consensus 343 dn-pG~w~~H 351 (396)
+. +|.|-++
T Consensus 267 ~~~~g~y~i~ 276 (539)
T PLN02835 267 NQSPKDYYIV 276 (539)
T ss_pred CCCCCcEEEE
Confidence 75 6866555
No 26
>PLN02792 oxidoreductase
Probab=98.39 E-value=3.7e-05 Score=78.92 Aligned_cols=73 Identities=10% Similarity=0.080 Sum_probs=59.5
Q ss_pred eEEeecCCEEEEEEecCCCCCCCCCCCCCeeecCCceEEEeecCCCCCcccccccCCCCCCccceEEeCCCcEEEEEEEc
Q 016030 263 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 342 (396)
Q Consensus 263 ~~~~~~g~~v~~vi~N~~~~~~~~~~~HP~HLHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~a 342 (396)
.+.++.|+++.|.|.|.+. ...+-|++.||.|+||+...... .|...|++.|.+|+.+.|.+++
T Consensus 194 ~~~v~~Gk~yRlRliNa~~-----~~~~~f~i~gH~~tVI~~DG~~v-----------~p~~~~~l~i~~GqRydVlV~a 257 (536)
T PLN02792 194 SITVDKGKTYRFRISNVGL-----QTSLNFEILGHQLKLIEVEGTHT-----------VQSMYTSLDIHVGQTYSVLVTM 257 (536)
T ss_pred eEEECCCCEEEEEEEEcCC-----CceEEEEECCcEEEEEEeCCccC-----------CCcceeEEEEccCceEEEEEEc
Confidence 4788999999999999874 35789999999999999843322 3566799999999999999998
Q ss_pred CC-CeeeEEe
Q 016030 343 DN-PGAWAFH 351 (396)
Q Consensus 343 dn-pG~w~~H 351 (396)
+. +|.|.+.
T Consensus 258 ~~~~g~Y~i~ 267 (536)
T PLN02792 258 DQPPQNYSIV 267 (536)
T ss_pred CCCCceEEEE
Confidence 86 4765554
No 27
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=98.23 E-value=6.2e-06 Score=71.30 Aligned_cols=90 Identities=20% Similarity=0.206 Sum_probs=72.7
Q ss_pred ceEEeecCCEEEEEEecCCCCCCCCCCCCCeeecCCceEEEeecCCCCCcccccccCCCCCCccceEEeCCCcEEEEEEE
Q 016030 262 GVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFV 341 (396)
Q Consensus 262 ~~~~~~~g~~v~~vi~N~~~~~~~~~~~HP~HLHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~ 341 (396)
..+.++.|+++.|.|.|.+. ...|.||+.||.|+||+..+... .|...|++.|.+|+.+.|.++
T Consensus 60 ~~~~v~~g~~~rlRliNa~~-----~~~~~~~i~gh~~~Via~DG~~v-----------~p~~~~~l~l~~G~R~dvlv~ 123 (159)
T PF00394_consen 60 PVIKVKPGERYRLRLINAGA-----STSFNFSIDGHPMTVIAADGVPV-----------EPYKVDTLVLAPGQRYDVLVT 123 (159)
T ss_dssp GEEEEETTTEEEEEEEEESS-----S-BEEEEETTBCEEEEEETTEEE-----------EEEEESBEEE-TTEEEEEEEE
T ss_pred ceEEEcCCcEEEEEEEeccC-----CeeEEEEeeccceeEeeeccccc-----------cccccceEEeeCCeEEEEEEE
Confidence 46899999999999999863 35899999999999999843322 277899999999999999999
Q ss_pred cCC-CeeeEEee----cchhhhhcCcEEEEe
Q 016030 342 ADN-PGAWAFHC----HIEPHFHIGMGVVLA 367 (396)
Q Consensus 342 adn-pG~w~~HC----Hi~~H~~~GM~~~~~ 367 (396)
++. +|.|.+++ +...+...|+..-++
T Consensus 124 ~~~~~g~y~i~~~~~~~~~~~~~~~~~~aiL 154 (159)
T PF00394_consen 124 ADQPPGNYWIRASYQHDSINDPQNGNALAIL 154 (159)
T ss_dssp ECSCSSEEEEEEEESSSSSHSHGGGTTEEEE
T ss_pred eCCCCCeEEEEEecccCCCccCCCcEEEEEE
Confidence 987 99999999 556667777654443
No 28
>PLN02354 copper ion binding / oxidoreductase
Probab=98.21 E-value=0.00013 Score=75.34 Aligned_cols=75 Identities=8% Similarity=0.081 Sum_probs=62.0
Q ss_pred eEEeecCCEEEEEEecCCCCCCCCCCCCCeeecCCceEEEeecCCCCCcccccccCCCCCCccceEEeCCCcEEEEEEEc
Q 016030 263 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 342 (396)
Q Consensus 263 ~~~~~~g~~v~~vi~N~~~~~~~~~~~HP~HLHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~a 342 (396)
.+.++.|+++.|.|.|.+. ....-||+.||.|+||+..... ..|...|++.|.+|+..-|-+++
T Consensus 208 ~~~v~~Gk~yRlRiINa~~-----~~~~~f~IdgH~~tVIa~DG~~-----------v~p~~~~~l~i~~GqRydVlv~a 271 (552)
T PLN02354 208 LFTMKPGKTYRYRICNVGL-----KSSLNFRIQGHKMKLVEMEGSH-----------VLQNDYDSLDVHVGQCFSVLVTA 271 (552)
T ss_pred EEEECCCCEEEEEEEecCC-----CceEEEEECCceEEEEEeCCcc-----------cCCcceeEEEEccCceEEEEEEC
Confidence 5788999999999999874 3578999999999999985332 23566899999999999999998
Q ss_pred CC-CeeeEEeec
Q 016030 343 DN-PGAWAFHCH 353 (396)
Q Consensus 343 dn-pG~w~~HCH 353 (396)
++ +|.|.+.-.
T Consensus 272 ~~~~g~Y~i~a~ 283 (552)
T PLN02354 272 NQAPKDYYMVAS 283 (552)
T ss_pred CCCCCcEEEEEe
Confidence 85 787766654
No 29
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=98.18 E-value=0.00012 Score=75.49 Aligned_cols=68 Identities=12% Similarity=0.103 Sum_probs=57.3
Q ss_pred ceEEeecCCEEEEEEecCCCCCCCCCCCCCeeecCCc-eEEEeecCCCCCcccccccCCCCCCccceEEeCCCcEEEEEE
Q 016030 262 GVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHD-FWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRF 340 (396)
Q Consensus 262 ~~~~~~~g~~v~~vi~N~~~~~~~~~~~HP~HLHG~~-F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf 340 (396)
..+.++.|+++.|.|.|.+. ....-|++.||. |+||+.... + ..|...|++.|.+|+..-|.+
T Consensus 198 ~~~~v~~G~~yRlRlINa~~-----~~~~~~~idgH~~~~VIa~DG~-~----------~~P~~v~~l~l~~GqRydVlv 261 (538)
T TIGR03390 198 PVIDVEPGKTYRLRFIGATA-----LSLISLGIEDHENLTIIEADGS-Y----------TKPAKIDHLQLGGGQRYSVLF 261 (538)
T ss_pred eEEEECCCCEEEEEEEccCC-----ceEEEEEECCCCeEEEEEeCCC-C----------CCceEeCeEEEccCCEEEEEE
Confidence 35789999999999999874 346899999999 999998543 2 457889999999999999999
Q ss_pred EcCCC
Q 016030 341 VADNP 345 (396)
Q Consensus 341 ~adnp 345 (396)
+++++
T Consensus 262 ~~~~~ 266 (538)
T TIGR03390 262 KAKTE 266 (538)
T ss_pred ECCCc
Confidence 98864
No 30
>PLN02991 oxidoreductase
Probab=98.11 E-value=0.00018 Score=73.97 Aligned_cols=72 Identities=8% Similarity=0.048 Sum_probs=58.6
Q ss_pred eEEeecCCEEEEEEecCCCCCCCCCCCCCeeecCCceEEEeecCCCCCcccccccCCCCCCccceEEeCCCcEEEEEEEc
Q 016030 263 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 342 (396)
Q Consensus 263 ~~~~~~g~~v~~vi~N~~~~~~~~~~~HP~HLHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~a 342 (396)
.+.++.|++++|+|.|.+. ...+-|+|.||.|+||+.... + ..|...|++.|.+|+..-|.+++
T Consensus 203 ~~~v~~G~~yRlRiINa~~-----~~~~~~~idgH~~tVIa~DG~-~----------~~p~~~~~l~i~~GQRydvlv~a 266 (543)
T PLN02991 203 TLNIEPGKTYRLRISNVGL-----QNSLNFRIQNHTMKLVEVEGT-H----------TIQTPFSSLDVHVGQSYSVLITA 266 (543)
T ss_pred eEEECCCCEEEEEEEeccC-----CeeEEEEECCCEEEEEEeCCc-c----------ccceeeeEEEEcCCcEEEEEEEC
Confidence 4788999999999999864 346899999999999998432 2 23677899999999999999998
Q ss_pred CCC-e-eeEE
Q 016030 343 DNP-G-AWAF 350 (396)
Q Consensus 343 dnp-G-~w~~ 350 (396)
+++ | .|+.
T Consensus 267 ~~~~~~y~i~ 276 (543)
T PLN02991 267 DQPAKDYYIV 276 (543)
T ss_pred CCCCCcEEEE
Confidence 875 5 5554
No 31
>PLN02168 copper ion binding / pectinesterase
Probab=98.10 E-value=0.00011 Score=75.48 Aligned_cols=66 Identities=9% Similarity=0.125 Sum_probs=55.1
Q ss_pred eEEeecCCEEEEEEecCCCCCCCCCCCCCeeecCCceEEEeecCCCCCcccccccCCCCCCccceEEeCCCcEEEEEEEc
Q 016030 263 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 342 (396)
Q Consensus 263 ~~~~~~g~~v~~vi~N~~~~~~~~~~~HP~HLHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~a 342 (396)
.+.++.|++++|+|.|.+. ...+-|++.||.|+|++... .+ ..|...|++.|.+|+..-|.+++
T Consensus 202 ~~~v~~G~~yRlRiiNa~~-----~~~~~~~IdgH~~tVIa~DG-~~----------v~p~~~~~l~i~~GqRydvlv~a 265 (545)
T PLN02168 202 FFAFEPGKTYRLRISNVGL-----KTCLNFRIQDHDMLLVETEG-TY----------VQKRVYSSLDIHVGQSYSVLVTA 265 (545)
T ss_pred eEEeCCCCEEEEEEEeccC-----CceEEEEECCcEEEEEEECC-eE----------CCCceeeEEEEcCCceEEEEEEc
Confidence 4788999999999999864 34699999999999999843 22 34667899999999999999998
Q ss_pred CC
Q 016030 343 DN 344 (396)
Q Consensus 343 dn 344 (396)
++
T Consensus 266 ~~ 267 (545)
T PLN02168 266 KT 267 (545)
T ss_pred CC
Confidence 74
No 32
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=98.07 E-value=2.7e-05 Score=66.19 Aligned_cols=89 Identities=16% Similarity=0.221 Sum_probs=57.2
Q ss_pred ceEEeecCCEEEEEEecCCCCCCCCCCCCCeeecCCce--EEEeecCCCCCcccccccCCCCCCccceEEeCC---C--c
Q 016030 262 GVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDF--WVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFP---Y--G 334 (396)
Q Consensus 262 ~~~~~~~g~~v~~vi~N~~~~~~~~~~~HP~HLHG~~F--~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~vp~---~--g 334 (396)
+.++++.|+.|++++.|.+. +..|.|-||-+.- .....-+|. +..-..-.+|+ + +
T Consensus 52 P~I~v~~Gd~V~v~v~N~~~-----~~~H~~~I~~~g~~~~~~p~mdG~-------------~~~~~~~i~p~~~~g~~~ 113 (148)
T TIGR03095 52 PTIVIPEGVTVHFTVINTDT-----DSGHNFDISKRGPPYPYMPGMDGL-------------GFVAGTGFLPPPKSGKFG 113 (148)
T ss_pred CEEEEcCCCEEEEEEEeCCC-----CccccEEeecCCCccccccccCCC-------------CccccCcccCCCCCCccc
Confidence 46889999999999999752 2456666653321 111000000 11111112222 2 2
Q ss_pred EEEEEEEcCCCeeeEEeecchhhhhcCcEEEEee
Q 016030 335 WTALRFVADNPGAWAFHCHIEPHFHIGMGVVLAL 368 (396)
Q Consensus 335 ~~~irf~adnpG~w~~HCHi~~H~~~GM~~~~~~ 368 (396)
+..+.|+++.+|.+.||||+..|...||...+.+
T Consensus 114 ~~~~tf~f~~aGtywyhC~~pgH~~~GM~G~iiV 147 (148)
T TIGR03095 114 YTDFTYHFSTAGTYWYLCTYPGHAENGMYGKIVV 147 (148)
T ss_pred eeEEEEECCCCeEEEEEcCChhHHHCCCEEEEEE
Confidence 4678888889999999999999999999988765
No 33
>PLN02191 L-ascorbate oxidase
Probab=98.06 E-value=2.9e-05 Score=80.55 Aligned_cols=89 Identities=21% Similarity=0.183 Sum_probs=66.7
Q ss_pred ceEEeecCCEEEEEEecCCCCCCCCCCCCCeeecCCceEEEeecCCCCCcccccccCCCCCCccceEEeCCCcEEEEEEE
Q 016030 262 GVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFV 341 (396)
Q Consensus 262 ~~~~~~~g~~v~~vi~N~~~~~~~~~~~HP~HLHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~ 341 (396)
+.++++.|+.+++.+.|.- ....+-+|.||.... +. .|. |. .+.--.-.|+||+..+.+|+
T Consensus 54 P~i~~~~Gd~v~v~v~N~l-----~~~~tsiHwHGl~~~--~~---~~~--DG-------v~gvtq~pI~PG~s~~Y~f~ 114 (574)
T PLN02191 54 PTIDAVAGDTIVVHLTNKL-----TTEGLVIHWHGIRQK--GS---PWA--DG-------AAGVTQCAINPGETFTYKFT 114 (574)
T ss_pred CeEEEEcCCEEEEEEEECC-----CCCCccEECCCCCCC--CC---ccc--cC-------CCccccCCcCCCCeEEEEEE
Confidence 5789999999999999952 124799999999632 11 010 00 00001124889999999999
Q ss_pred cCCCeeeEEeecchhhhhcCcEEEEeec
Q 016030 342 ADNPGAWAFHCHIEPHFHIGMGVVLALG 369 (396)
Q Consensus 342 adnpG~w~~HCHi~~H~~~GM~~~~~~~ 369 (396)
++.+|.|.||||...+...||...|++.
T Consensus 115 ~~~~GT~wYHsH~~~q~~~Gl~G~liV~ 142 (574)
T PLN02191 115 VEKPGTHFYHGHYGMQRSAGLYGSLIVD 142 (574)
T ss_pred CCCCeEEEEeeCcHHHHhCCCEEEEEEc
Confidence 9999999999999999999999887774
No 34
>PRK10883 FtsI repressor; Provisional
Probab=98.01 E-value=0.00068 Score=68.85 Aligned_cols=74 Identities=14% Similarity=0.120 Sum_probs=58.3
Q ss_pred eEEeecCCEEEEEEecCCCCCCCCCCCCCeee-cCCceEEEeecCCCCCcccccccCCCCCCccceEEeCCCcEEEEEEE
Q 016030 263 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHL-HGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFV 341 (396)
Q Consensus 263 ~~~~~~g~~v~~vi~N~~~~~~~~~~~HP~HL-HG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~ 341 (396)
.+.++.+ +++|.|.|.+. ....-|++ +||.|+||+...|.+ ..|...|.+.|.+|+.+-|-++
T Consensus 221 ~~~v~~~-~~RlRliNas~-----~~~~~l~l~d~~~~~vIa~DGg~~----------~~P~~~~~l~l~pGeR~dvlVd 284 (471)
T PRK10883 221 YVEVSRG-WVRLRLLNASN-----ARRYQLQMSDGRPLHVIAGDQGFL----------PAPVSVKQLSLAPGERREILVD 284 (471)
T ss_pred eEEecCC-EEEEEEEEccC-----CceEEEEEcCCCeEEEEEeCCCcc----------cCCcEeCeEEECCCCeEEEEEE
Confidence 3566654 78999999863 23567777 899999999965654 3466779999999999999999
Q ss_pred cCCCeeeEEee
Q 016030 342 ADNPGAWAFHC 352 (396)
Q Consensus 342 adnpG~w~~HC 352 (396)
+++.+.|.+++
T Consensus 285 ~~~~~~~~l~~ 295 (471)
T PRK10883 285 MSNGDEVSITA 295 (471)
T ss_pred CCCCceEEEEC
Confidence 88778888876
No 35
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=97.81 E-value=0.00012 Score=75.88 Aligned_cols=87 Identities=22% Similarity=0.157 Sum_probs=67.5
Q ss_pred ceEEeecCCEEEEEEecCCCCCCCCCCCCCeeecCCceEEEeecCCCCCcccccccCCCCCCccceEEeCCCcEEEEEEE
Q 016030 262 GVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFV 341 (396)
Q Consensus 262 ~~~~~~~g~~v~~vi~N~~~~~~~~~~~HP~HLHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~ 341 (396)
+.++++.|+.+++.+.|.- ..++-+|+||...- ..-+|. +..-.-.|+||+....+|.
T Consensus 76 P~ir~~~Gd~v~v~v~N~l------~~~tsiHwHGl~~~--~~~DGv--------------P~vt~~~I~PG~s~~Y~f~ 133 (587)
T TIGR01480 76 PLLRWREGDTVRLRVTNTL------PEDTSIHWHGILLP--FQMDGV--------------PGVSFAGIAPGETFTYRFP 133 (587)
T ss_pred ceEEEECCCEEEEEEEcCC------CCCceEEcCCCcCC--ccccCC--------------CcccccccCCCCeEEEEEE
Confidence 5689999999999999963 46899999998531 111111 1111124889999999999
Q ss_pred cCCCeeeEEeecchhhhhcCcEEEEeecc
Q 016030 342 ADNPGAWAFHCHIEPHFHIGMGVVLALGV 370 (396)
Q Consensus 342 adnpG~w~~HCHi~~H~~~GM~~~~~~~~ 370 (396)
+..+|.|.||||...++..||...|++.+
T Consensus 134 ~~~~GTyWYHsH~~~q~~~GL~G~lIV~~ 162 (587)
T TIGR01480 134 VRQSGTYWYHSHSGFQEQAGLYGPLIIDP 162 (587)
T ss_pred CCCCeeEEEecCchhHhhccceEEEEECC
Confidence 99999999999999999999998877764
No 36
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=97.68 E-value=0.00054 Score=57.44 Aligned_cols=73 Identities=11% Similarity=0.222 Sum_probs=64.3
Q ss_pred eEEEEcCCCeEEEEEEecCccceEEEEEeCceeEEEEeCCcee-----------eeeEeceEEecCCceEEEEEeeCCCC
Q 016030 49 QILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGNYV-----------QPFEVDDMDIYSGESYSVLLTTNQDP 117 (396)
Q Consensus 49 ~~~~v~~G~~yRlRlINa~~~~~~~~sId~h~l~VIa~DG~~v-----------~P~~v~~l~i~~GqRyDVlv~~~~~~ 117 (396)
..+.++.|++++|+|+|.+.. ...|.+-||+|+|++.++... +|...|.+.|.+|++..|.+.++. +
T Consensus 34 ~~~~~~~g~~v~~~l~N~~~~-~Hp~HlHG~~F~vl~~~~~~~~~~~~~~~~~~~~~~~DTv~v~~~~~~~i~~~~~~-~ 111 (138)
T PF07731_consen 34 PVIEVKNGDVVEIVLQNNGSM-PHPFHLHGHSFQVLGRGGGPWNPDDTQSYNPENPGWRDTVLVPPGGWVVIRFRADN-P 111 (138)
T ss_dssp SEEEEETTSEEEEEEEECTTS-SEEEEETTSEEEEEEETTEESTTHCGGCCCSSSSSEESEEEEETTEEEEEEEEETS-T
T ss_pred ceEEEeCCCEEEEEEECCCCC-ccceEEEeeEEEeeecCCcccccccccccccccCcccccccccceeEEEEEEEeec-c
Confidence 589999999999999997766 779999999999999999984 688999999999999999999974 4
Q ss_pred CcceEEE
Q 016030 118 SYNYWIS 124 (396)
Q Consensus 118 ~~~y~ir 124 (396)
| .|-+.
T Consensus 112 G-~w~~H 117 (138)
T PF07731_consen 112 G-PWLFH 117 (138)
T ss_dssp E-EEEEE
T ss_pred e-EEEEE
Confidence 4 55444
No 37
>PRK10965 multicopper oxidase; Provisional
Probab=97.59 E-value=0.00023 Score=73.09 Aligned_cols=67 Identities=10% Similarity=0.147 Sum_probs=57.4
Q ss_pred eEEEEcCCCeEEEEEEecCccceEEEEEeCceeEEEEeCCceeee---eEeceEEecCCceEEEEEeeCCC
Q 016030 49 QILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGNYVQP---FEVDDMDIYSGESYSVLLTTNQD 116 (396)
Q Consensus 49 ~~~~v~~G~~yRlRlINa~~~~~~~~sId~h~l~VIa~DG~~v~P---~~v~~l~i~~GqRyDVlv~~~~~ 116 (396)
+.++++.|++.+|+|+|.+......|+|.++.|+|++.||.+..+ -..|+|.+.+ ++..|++.++..
T Consensus 426 ~~~~~~~G~~e~w~i~N~~~~~~Hp~HlHg~~F~Vl~~~g~~~~~~~~~wkDTv~v~~-~~~~i~~~f~~~ 495 (523)
T PRK10965 426 PMFAAKKGQYERWVISGVGDMMLHPFHIHGTQFRILSENGKPPAAHRAGWKDTVRVEG-GRSEVLVKFDHD 495 (523)
T ss_pred cceecCCCCEEEEEEEeCCCCCccCeEEeCcEEEEEEecCCCCCccccccccEEEECC-cEEEEEEEecCC
Confidence 357899999999999999975568999999999999999998753 3459999966 889999999753
No 38
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=97.57 E-value=0.00039 Score=54.99 Aligned_cols=81 Identities=17% Similarity=0.215 Sum_probs=56.2
Q ss_pred eEEeecCCEEEEEEecCCCCCCCCCCCCCeeecCCceEEEeecCCCCCcccccccCCCCCCccceEEeCCCcEEEEEEEc
Q 016030 263 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 342 (396)
Q Consensus 263 ~~~~~~g~~v~~vi~N~~~~~~~~~~~HP~HLHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~a 342 (396)
.+.++.|++|+|+ |.+ ..+|-+.++.-.+..-. ..+ ......+++.+.||....+.|..
T Consensus 18 ~i~v~~G~~V~~~--N~~------~~~H~~~~~~~~~~~~~---~~~----------~~~~~~~~~~~~pG~t~~~tF~~ 76 (99)
T TIGR02656 18 KISIAAGDTVEWV--NNK------GGPHNVVFDEDAVPAGV---KEL----------AKSLSHKDLLNSPGESYEVTFST 76 (99)
T ss_pred EEEECCCCEEEEE--ECC------CCCceEEECCCCCccch---hhh----------cccccccccccCCCCEEEEEeCC
Confidence 5789999999887 543 34677776543221100 000 00123467788999998888876
Q ss_pred CCCeeeEEeecchhhhhcCcEEEEee
Q 016030 343 DNPGAWAFHCHIEPHFHIGMGVVLAL 368 (396)
Q Consensus 343 dnpG~w~~HCHi~~H~~~GM~~~~~~ 368 (396)
||.|.|||- .|..+||...+.|
T Consensus 77 --~G~y~y~C~--~H~~aGM~G~I~V 98 (99)
T TIGR02656 77 --PGTYTFYCE--PHRGAGMVGKITV 98 (99)
T ss_pred --CEEEEEEcC--CccccCCEEEEEE
Confidence 999999998 8999999988765
No 39
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=97.46 E-value=0.00052 Score=71.16 Aligned_cols=89 Identities=16% Similarity=0.034 Sum_probs=68.1
Q ss_pred ceEEeecCCEEEEEEecCCCCCCCCCCCCCeeecCCceEEEeecCCCCCcccccccCCCCCCccceEEeCCCcEEEEEEE
Q 016030 262 GVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFV 341 (396)
Q Consensus 262 ~~~~~~~g~~v~~vi~N~~~~~~~~~~~HP~HLHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~ 341 (396)
+.+++..|+.+++.+.|.- +...-+|+||.+..--...+|. +. ..-.|+||+....+|+
T Consensus 60 PtI~~~~GD~v~V~V~N~L------~~~ttIHWHGl~q~~t~w~DGv--------------~~-TQcPI~PG~sftY~F~ 118 (596)
T PLN00044 60 PALNVTTNWNLVVNVRNAL------DEPLLLTWHGVQQRKSAWQDGV--------------GG-TNCAIPAGWNWTYQFQ 118 (596)
T ss_pred CcEEEECCCEEEEEEEeCC------CCCccEEECCccCCCCccccCC--------------CC-CcCCcCCCCcEEEEEE
Confidence 4689999999999999963 4578999999764321111111 11 2345899999999999
Q ss_pred c-CCCeeeEEeecchhhhhcCcEEEEeeccc
Q 016030 342 A-DNPGAWAFHCHIEPHFHIGMGVVLALGVE 371 (396)
Q Consensus 342 a-dnpG~w~~HCHi~~H~~~GM~~~~~~~~~ 371 (396)
+ |.+|.+.||+|..++...||...|++.+.
T Consensus 119 ~~dq~GT~WYHsH~~~Q~~~Gl~GalII~~~ 149 (596)
T PLN00044 119 VKDQVGSFFYAPSTALHRAAGGYGAITINNR 149 (596)
T ss_pred eCCCCceeEeeccchhhhhCcCeeEEEEcCc
Confidence 8 68999999999999999999887776643
No 40
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=97.42 E-value=0.00083 Score=55.60 Aligned_cols=60 Identities=20% Similarity=0.347 Sum_probs=48.5
Q ss_pred eEEeecCCEEEEEEecCCCCCCCCCCCCCeeecCCceEEEeecCCCCCcccccccCCCCCCccceEEeCCCcEEEEEEEc
Q 016030 263 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 342 (396)
Q Consensus 263 ~~~~~~g~~v~~vi~N~~~~~~~~~~~HP~HLHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~a 342 (396)
.++++.|+.|+|++.|.+ +.+|.|-++++.+ ...|++++...++|.+
T Consensus 62 ~I~VkaGD~Vtl~vtN~d------~~~H~f~i~~~gi---------------------------s~~I~pGet~TitF~a 108 (135)
T TIGR03096 62 ALVVKKGTPVKVTVENKS------PISEGFSIDAYGI---------------------------SEVIKAGETKTISFKA 108 (135)
T ss_pred EEEECCCCEEEEEEEeCC------CCccceEECCCCc---------------------------ceEECCCCeEEEEEEC
Confidence 478999999999999976 3477777766521 2347889999999999
Q ss_pred CCCeeeEEeecch
Q 016030 343 DNPGAWAFHCHIE 355 (396)
Q Consensus 343 dnpG~w~~HCHi~ 355 (396)
+.||.+.|||-+-
T Consensus 109 dKpG~Y~y~C~~H 121 (135)
T TIGR03096 109 DKAGAFTIWCQLH 121 (135)
T ss_pred CCCEEEEEeCCCC
Confidence 9999999999753
No 41
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=96.98 E-value=0.004 Score=49.62 Aligned_cols=68 Identities=19% Similarity=0.334 Sum_probs=42.5
Q ss_pred eEEeecCCEEEEEEecCCCCCCCCCCCCCeeecCCceEEEeecCCCCCcccccccCCCCCCccceEEeCCCcEEEEEEEc
Q 016030 263 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 342 (396)
Q Consensus 263 ~~~~~~g~~v~~vi~N~~~~~~~~~~~HP~HLHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~a 342 (396)
.+.++.|+.+.+++.|.+ ...|-|.+.+. +.+ ..|++|+...+.|.+
T Consensus 36 ~i~v~~G~~v~l~~~N~~------~~~h~~~i~~~--------------------------~~~-~~l~~g~~~~~~f~~ 82 (104)
T PF13473_consen 36 TITVKAGQPVTLTFTNND------SRPHEFVIPDL--------------------------GIS-KVLPPGETATVTFTP 82 (104)
T ss_dssp EEEEETTCEEEEEEEE-S------SS-EEEEEGGG--------------------------TEE-EEE-TT-EEEEEEEE
T ss_pred EEEEcCCCeEEEEEEECC------CCcEEEEECCC--------------------------ceE-EEECCCCEEEEEEcC
Confidence 589999999999999986 23454444441 112 558889999999999
Q ss_pred CCCeeeEEeecchhhhhcCcEE
Q 016030 343 DNPGAWAFHCHIEPHFHIGMGV 364 (396)
Q Consensus 343 dnpG~w~~HCHi~~H~~~GM~~ 364 (396)
+.||.|-|||-+-.+ +.|..+
T Consensus 83 ~~~G~y~~~C~~~~~-m~G~li 103 (104)
T PF13473_consen 83 LKPGEYEFYCTMHPN-MKGTLI 103 (104)
T ss_dssp -S-EEEEEB-SSS-T-TB----
T ss_pred CCCEEEEEEcCCCCc-ceeccc
Confidence 999999999996665 566543
No 42
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.55 E-value=0.011 Score=61.04 Aligned_cols=78 Identities=19% Similarity=0.299 Sum_probs=57.6
Q ss_pred eEEeecCCEEEEEEecCCCCCCCCCCCCCeeecCCceEEEeecCCCCCcccccccCCCCCCccceEEeCCCcEEEEEEEc
Q 016030 263 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 342 (396)
Q Consensus 263 ~~~~~~g~~v~~vi~N~~~~~~~~~~~HP~HLHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~a 342 (396)
.++++.|+.|.|++.|.+.. .+..|-|.+-++... +.+.|+....+.|++
T Consensus 556 ~i~Vk~GDeVt~~lTN~d~~---~DViHGF~Ip~~nI~---------------------------~dv~PG~t~svtF~a 605 (635)
T PRK02888 556 EFTVKQGDEVTVIVTNLDKV---EDLTHGFAIPNYGVN---------------------------MEVAPQATASVTFTA 605 (635)
T ss_pred eEEecCCCEEEEEEEeCCcc---cccccceeecccCcc---------------------------EEEcCCceEEEEEEc
Confidence 56789999999999997532 256787777555322 235678899999999
Q ss_pred CCCeeeEEeecchhhh-hcCcEEEEeecc
Q 016030 343 DNPGAWAFHCHIEPHF-HIGMGVVLALGV 370 (396)
Q Consensus 343 dnpG~w~~HCHi~~H~-~~GM~~~~~~~~ 370 (396)
+.||.|.+||...-|. +.+|...++|.+
T Consensus 606 dkPGvy~~~CtefCGa~H~~M~G~~iVep 634 (635)
T PRK02888 606 DKPGVYWYYCTWFCHALHMEMRGRMLVEP 634 (635)
T ss_pred CCCEEEEEECCcccccCcccceEEEEEEe
Confidence 9999999999985442 247777766644
No 43
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.51 E-value=0.013 Score=60.45 Aligned_cols=89 Identities=19% Similarity=0.138 Sum_probs=67.2
Q ss_pred ceEEeecCCEEEEEEecCCCCCCCCCCCCCeeecCCceEEEeecCCCCCcccccccCCCCCCccceEEeCCCcEEEEEEE
Q 016030 262 GVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFV 341 (396)
Q Consensus 262 ~~~~~~~g~~v~~vi~N~~~~~~~~~~~HP~HLHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~ 341 (396)
+.+.+..|+.+.+.+.|.- +.+=-+|.||....=-.-.+|.+ =-.=-|+||...+.+|.
T Consensus 59 P~I~~~~gD~ivV~v~N~~------~~~~sihWhGv~q~kn~w~DG~~---------------~TqCPI~Pg~~~tY~F~ 117 (563)
T KOG1263|consen 59 PTINAEEGDTIVVNVVNRL------DEPFSIHWHGVRQRKNPWQDGVY---------------ITQCPIQPGENFTYRFT 117 (563)
T ss_pred CeEEEEeCCEEEEEEEeCC------CCceEEEeccccccCCccccCCc---------------cccCCcCCCCeEEEEEE
Confidence 4588899999999999952 35677899998664332223321 01113789999999999
Q ss_pred cC-CCeeeEEeecchhhhhcCcEEEEeeccc
Q 016030 342 AD-NPGAWAFHCHIEPHFHIGMGVVLALGVE 371 (396)
Q Consensus 342 ad-npG~w~~HCHi~~H~~~GM~~~~~~~~~ 371 (396)
.+ +.|.|+||-|..||-+.||...|.+-+.
T Consensus 118 v~~q~GT~~yh~h~~~~Ra~G~~G~liI~~~ 148 (563)
T KOG1263|consen 118 VKDQIGTLWYHSHVSWQRATGVFGALIINPR 148 (563)
T ss_pred eCCcceeEEEeeccccccccCceeEEEEcCC
Confidence 75 9999999999999999999887776654
No 44
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=96.50 E-value=0.033 Score=43.87 Aligned_cols=82 Identities=17% Similarity=0.287 Sum_probs=53.5
Q ss_pred ceEEeecCCEEEEEEecCCCCCCCCCCCCCeeecCCceEEEeecCCCCCcccccccCCCCCCccceEEeCCCcEEEEEEE
Q 016030 262 GVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFV 341 (396)
Q Consensus 262 ~~~~~~~g~~v~~vi~N~~~~~~~~~~~HP~HLHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~ 341 (396)
..+.++.|++|.|+..+ ...|-+++ .. +..+... +..... ..-.+..+.+|....+.|.
T Consensus 17 ~~i~V~~G~tV~~~n~~--------~~~Hnv~~-------~~-~~~~~~~-~~~~~~----~~~~~~~~~~G~~~~~tF~ 75 (99)
T PF00127_consen 17 SEITVKAGDTVTFVNND--------SMPHNVVF-------VA-DGMPAGA-DSDYVP----PGDSSPLLAPGETYSVTFT 75 (99)
T ss_dssp SEEEEETTEEEEEEEES--------SSSBEEEE-------ET-TSSHTTG-GHCHHS----TTCEEEEBSTTEEEEEEEE
T ss_pred CEEEECCCCEEEEEECC--------CCCceEEE-------ec-ccccccc-cccccC----ccccceecCCCCEEEEEeC
Confidence 35889999999987663 23565543 22 1110000 111111 1115677888888888888
Q ss_pred cCCCeeeEEeecchhhhhcCcEEEEee
Q 016030 342 ADNPGAWAFHCHIEPHFHIGMGVVLAL 368 (396)
Q Consensus 342 adnpG~w~~HCHi~~H~~~GM~~~~~~ 368 (396)
.||.|.|+|- - |...||...+.|
T Consensus 76 --~~G~y~y~C~-P-H~~~GM~G~i~V 98 (99)
T PF00127_consen 76 --KPGTYEYYCT-P-HYEAGMVGTIIV 98 (99)
T ss_dssp --SSEEEEEEET-T-TGGTTSEEEEEE
T ss_pred --CCeEEEEEcC-C-CcccCCEEEEEE
Confidence 9999999999 4 999999988765
No 45
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.21 E-value=0.32 Score=49.33 Aligned_cols=72 Identities=17% Similarity=0.104 Sum_probs=55.9
Q ss_pred ecCCEEEEEEecCCCCCCCCCCCCCeeecCCceEEEeecCCCCCcccccccCCCCCCccceEEeCCCcEEEEEEEcCCCe
Q 016030 267 GLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVADNPG 346 (396)
Q Consensus 267 ~~g~~v~~vi~N~~~~~~~~~~~HP~HLHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~adnpG 346 (396)
..+.++++.|.|.+. ....=+++.|++++|++..++... +...|.+.+-|++...|..++.+.|
T Consensus 204 ~~~g~~rlRl~n~~~-----~~~~~~~~~~~~~~Vi~~DG~~v~-----------~~~~d~~~l~p~er~~v~v~~~~~~ 267 (451)
T COG2132 204 VPGGVVRLRLLNAGN-----ARTYHLALGGGPLTVIAVDGGPLP-----------PVSVDELYLAPGERYEVLVDMNDGG 267 (451)
T ss_pred cCCCeEEEEEEecCC-----ceEEEEEecCceEEEEEeCCcCcC-----------ceeeeeEEecCcceEEEEEEcCCCC
Confidence 345569999999752 123445556999999998655442 3578999999999999999988899
Q ss_pred eeEEeecc
Q 016030 347 AWAFHCHI 354 (396)
Q Consensus 347 ~w~~HCHi 354 (396)
.+.+.|.-
T Consensus 268 ~~~l~~~~ 275 (451)
T COG2132 268 AVTLTALG 275 (451)
T ss_pred eEEEEecc
Confidence 99999987
No 46
>PRK02710 plastocyanin; Provisional
Probab=95.92 E-value=0.045 Score=44.72 Aligned_cols=71 Identities=20% Similarity=0.291 Sum_probs=49.7
Q ss_pred eEEeecCCEEEEEEecCCCCCCCCCCCCCeeecCCceEEEeecCCCCCcccccccCCCCCCccceEEeCCCcEEEEEEEc
Q 016030 263 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 342 (396)
Q Consensus 263 ~~~~~~g~~v~~vi~N~~~~~~~~~~~HP~HLHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~a 342 (396)
.+.++.|++|+|+ |.+ ..+|-+.+.+.. .+ ..+| ..+.++....+.|..
T Consensus 48 ~i~v~~Gd~V~~~--N~~------~~~H~v~~~~~~---------~~-------------~~~~-~~~~pg~t~~~tF~~ 96 (119)
T PRK02710 48 TLTIKAGDTVKWV--NNK------LAPHNAVFDGAK---------EL-------------SHKD-LAFAPGESWEETFSE 96 (119)
T ss_pred EEEEcCCCEEEEE--ECC------CCCceEEecCCc---------cc-------------cccc-cccCCCCEEEEEecC
Confidence 4788999999886 533 347877654221 11 0111 346778887777776
Q ss_pred CCCeeeEEeecchhhhhcCcEEEEee
Q 016030 343 DNPGAWAFHCHIEPHFHIGMGVVLAL 368 (396)
Q Consensus 343 dnpG~w~~HCHi~~H~~~GM~~~~~~ 368 (396)
||.+.|+|= .|...||-..+.|
T Consensus 97 --~G~y~y~C~--~H~~~gM~G~I~V 118 (119)
T PRK02710 97 --AGTYTYYCE--PHRGAGMVGKITV 118 (119)
T ss_pred --CEEEEEEcC--CCccCCcEEEEEE
Confidence 999999997 8999999988765
No 47
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=95.21 E-value=0.06 Score=45.36 Aligned_cols=93 Identities=19% Similarity=0.213 Sum_probs=63.8
Q ss_pred EEeecCCEEEEEEecCCCCCCCCCCCCCeeecCCceEEEeecCCCCCcccccccCCCCCCccceEEeCCCcEEEEEEEcC
Q 016030 264 YMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVAD 343 (396)
Q Consensus 264 ~~~~~g~~v~~vi~N~~~~~~~~~~~HP~HLHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~ad 343 (396)
+.++.|++++.++.|... ..|=|=+- ++.... +.+... ....-..-.-..++.+.||....+-++..
T Consensus 65 ~~v~aG~tv~~v~~n~~e------l~hef~~~---~~~~~~--~~~~~~--~~~~Dme~d~~~~v~L~PG~s~elvv~ft 131 (158)
T COG4454 65 FEVKAGETVRFVLKNEGE------LKHEFTMD---APDKNL--EHVTHM--ILADDMEHDDPNTVTLAPGKSGELVVVFT 131 (158)
T ss_pred ccccCCcEEeeeecCccc------ceEEEecc---Cccccc--hhHHHh--hhCCccccCCcceeEeCCCCcEEEEEEec
Confidence 577899999999999752 34544333 111111 111100 00000112356789999999999999999
Q ss_pred CCeeeEEeecchhhhhcCcEEEEeec
Q 016030 344 NPGAWAFHCHIEPHFHIGMGVVLALG 369 (396)
Q Consensus 344 npG~w~~HCHi~~H~~~GM~~~~~~~ 369 (396)
++|.+-|-|-|-+|-+.||-..|.+.
T Consensus 132 ~~g~ye~~C~iPGHy~AGM~g~itV~ 157 (158)
T COG4454 132 GAGKYEFACNIPGHYEAGMVGEITVS 157 (158)
T ss_pred CCccEEEEecCCCcccCCcEEEEEeC
Confidence 99999999999999999999888664
No 48
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=95.20 E-value=0.091 Score=43.64 Aligned_cols=63 Identities=14% Similarity=0.216 Sum_probs=49.5
Q ss_pred CCCCCceEEEEcCCCeEEEEEEecCccceEEEEEeCceeEEEEeCCceeeeeEeceEEecCCceEEEEEeeCCCCCcceE
Q 016030 43 NEQCAPQILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYW 122 (396)
Q Consensus 43 ~~~~~~~~~~v~~G~~yRlRlINa~~~~~~~~sId~h~l~VIa~DG~~v~P~~v~~l~i~~GqRyDVlv~~~~~~~~~y~ 122 (396)
+...+|..|+|++|++++|++.|... ....+.|+++. -+..|.+||+..+-+.+++. | .|+
T Consensus 55 n~~~~P~~I~VkaGD~Vtl~vtN~d~-~~H~f~i~~~g----------------is~~I~pGet~TitF~adKp-G-~Y~ 115 (135)
T TIGR03096 55 NVLNEPEALVVKKGTPVKVTVENKSP-ISEGFSIDAYG----------------ISEVIKAGETKTISFKADKA-G-AFT 115 (135)
T ss_pred eeEEcCCEEEECCCCEEEEEEEeCCC-CccceEECCCC----------------cceEECCCCeEEEEEECCCC-E-EEE
Confidence 45567889999999999999999987 35566666652 15678999999999999884 3 887
Q ss_pred EE
Q 016030 123 IS 124 (396)
Q Consensus 123 ir 124 (396)
..
T Consensus 116 y~ 117 (135)
T TIGR03096 116 IW 117 (135)
T ss_pred Ee
Confidence 64
No 49
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=94.08 E-value=0.16 Score=40.32 Aligned_cols=61 Identities=15% Similarity=0.242 Sum_probs=40.2
Q ss_pred CCCceEEEEcCCCeEEEEEEecCccceEEEEEeCceeEEEEeCCceeeeeEeceEEecCCceEEEEEeeCCCCCcceEEE
Q 016030 45 QCAPQILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWIS 124 (396)
Q Consensus 45 ~~~~~~~~v~~G~~yRlRlINa~~~~~~~~sId~h~l~VIa~DG~~v~P~~v~~l~i~~GqRyDVlv~~~~~~~~~y~ir 124 (396)
.+.|..++|++|+.++|.+.|.+... ..|.|++.. ....|.+|+...+.+.+.+ +| +|.+.
T Consensus 31 ~f~P~~i~v~~G~~v~l~~~N~~~~~-h~~~i~~~~----------------~~~~l~~g~~~~~~f~~~~-~G-~y~~~ 91 (104)
T PF13473_consen 31 GFSPSTITVKAGQPVTLTFTNNDSRP-HEFVIPDLG----------------ISKVLPPGETATVTFTPLK-PG-EYEFY 91 (104)
T ss_dssp EEES-EEEEETTCEEEEEEEE-SSS--EEEEEGGGT----------------EEEEE-TT-EEEEEEEE-S--E-EEEEB
T ss_pred eEecCEEEEcCCCeEEEEEEECCCCc-EEEEECCCc----------------eEEEECCCCEEEEEEcCCC-CE-EEEEE
Confidence 45678999999999999999998764 566666611 1256889999988887655 43 77653
No 50
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=93.65 E-value=0.78 Score=37.23 Aligned_cols=35 Identities=20% Similarity=0.499 Sum_probs=28.8
Q ss_pred CCcEEEEEEEcCCCeeeEEeecchhhhhcCcEEEEeecc
Q 016030 332 PYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALGV 370 (396)
Q Consensus 332 ~~g~~~irf~adnpG~w~~HCHi~~H~~~GM~~~~~~~~ 370 (396)
++....+.| +.||.+-|+|= .|...||...+.|+.
T Consensus 54 ~g~~~~~tF--~~~G~Y~Y~C~--pH~~~GM~G~V~Vg~ 88 (116)
T TIGR02375 54 INEEYTVTV--TEEGVYGVKCT--PHYGMGMVALIQVGD 88 (116)
T ss_pred CCCEEEEEe--CCCEEEEEEcC--CCccCCCEEEEEECC
Confidence 455555555 68999999998 999999999998875
No 51
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=92.44 E-value=1.3 Score=36.14 Aligned_cols=63 Identities=17% Similarity=0.244 Sum_probs=48.9
Q ss_pred cceEEeecCCEEEEEEecCCCCCCCCCCCCCeeecCCceEEEeecCCCCCcccccccCCCCCCccceEEeCCCcEEEEEE
Q 016030 261 SGVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRF 340 (396)
Q Consensus 261 ~~~~~~~~g~~v~~vi~N~~~~~~~~~~~HP~HLHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf 340 (396)
...+.++.|+.+.+.+.+.| ..|-|.+-+....+ .+.||....+.|
T Consensus 45 ~~~l~lp~g~~v~~~ltS~D-------ViHsf~ip~~~~k~---------------------------d~~PG~~~~~~~ 90 (120)
T PF00116_consen 45 DNELVLPAGQPVRFHLTSED-------VIHSFWIPELGIKM---------------------------DAIPGRTNSVTF 90 (120)
T ss_dssp SSEEEEETTSEEEEEEEESS-------S-EEEEETTCTEEE---------------------------EEBTTCEEEEEE
T ss_pred cceecccccceEeEEEEcCC-------ccccccccccCccc---------------------------ccccccceeeee
Confidence 34689999999999999975 57888887665542 244677888999
Q ss_pred EcCCCeeeEEeecchhh
Q 016030 341 VADNPGAWAFHCHIEPH 357 (396)
Q Consensus 341 ~adnpG~w~~HCHi~~H 357 (396)
+++.||.+-+.|...=.
T Consensus 91 ~~~~~G~y~~~C~e~CG 107 (120)
T PF00116_consen 91 TPDKPGTYYGQCAEYCG 107 (120)
T ss_dssp EESSSEEEEEEE-SSSS
T ss_pred eeccCCcEEEcCccccC
Confidence 99999999999987644
No 52
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=91.94 E-value=0.059 Score=43.92 Aligned_cols=76 Identities=21% Similarity=0.305 Sum_probs=52.8
Q ss_pred ceEEEEcCCCeEEEEEEecCccceEEEEEeCceeEE-EEeCCceeeeeEeceEEecCCceEEEEEeeCCCCCcceEEEEE
Q 016030 48 PQILHVQPNKTYRLRIASTTALASLNLAVKNHKMVV-VEADGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAG 126 (396)
Q Consensus 48 ~~~~~v~~G~~yRlRlINa~~~~~~~~sId~h~l~V-Ia~DG~~v~P~~v~~l~i~~GqRyDVlv~~~~~~~~~y~ir~~ 126 (396)
.++|.++.|++++++|.|... ....|+.-|-.+.- -..||..-.+ .-.|.||+.+..-+.+++.+| .||-...
T Consensus 25 GPtI~v~~Gd~v~i~~~N~l~-~~~siH~HG~~~~~~~~~DG~~~~~----~~~i~pG~~~~Y~~~~~~~~G-t~wYH~H 98 (117)
T PF07732_consen 25 GPTIRVREGDTVRITVTNNLD-EPTSIHWHGLHQPPSPWMDGVPGVT----QCPIAPGESFTYEFTANQQAG-TYWYHSH 98 (117)
T ss_dssp EEEEEEETTEEEEEEEEEESS-SGBSEEEETSBSTTGGGGSGGTTTS----GSSBSTTEEEEEEEEESSCSE-EEEEEEC
T ss_pred CCEEEEEcCCeeEEEEEeccc-cccccccceeeeeeeeecCCccccc----ceeEEeecceeeeEeeecccc-ceeEeeC
Confidence 479999999999999999984 34455555432111 0267765321 235899999999999988555 9998765
Q ss_pred ecC
Q 016030 127 VRG 129 (396)
Q Consensus 127 ~~~ 129 (396)
..+
T Consensus 99 ~~~ 101 (117)
T PF07732_consen 99 VHG 101 (117)
T ss_dssp STT
T ss_pred CCc
Confidence 443
No 53
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=91.93 E-value=1.8 Score=38.18 Aligned_cols=98 Identities=16% Similarity=0.125 Sum_probs=60.5
Q ss_pred ccceEEeecCCEEEEEEecCCCCCCCCCCCCCeeecCCceEEEeecCCCCCcc----cccccCC--CCCCccceEEeCCC
Q 016030 260 GSGVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKE----DEKKFNL--KNPPLKNTAVIFPY 333 (396)
Q Consensus 260 ~~~~~~~~~g~~v~~vi~N~~~~~~~~~~~HP~HLHG~~F~Vl~~g~g~~~~~----~~~~~n~--~~p~~rDTv~vp~~ 333 (396)
+...+.++.|-.|.++|.|.+. .+ |.|-|+..+....... |.+.+.+ ..+.--..--|++|
T Consensus 84 G~m~i~VPAGw~V~i~f~N~~~------l~-------Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G 150 (196)
T PF06525_consen 84 GQMTIYVPAGWNVQITFTNQES------LP-------HNLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSG 150 (196)
T ss_pred CcEEEEEcCCCEEEEEEEcCCC------CC-------eeEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCC
Confidence 4456889999999999999763 34 4666665432211100 1111100 00100001123455
Q ss_pred cEEEEEEEcCCCeeeEEeecchhhhhcCcEEEEeecc
Q 016030 334 GWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALGV 370 (396)
Q Consensus 334 g~~~irf~adnpG~w~~HCHi~~H~~~GM~~~~~~~~ 370 (396)
.....-|..-.||.+.|=|-|.-|.+.||-..|.+..
T Consensus 151 ~s~~~~~~~l~aG~YwlvC~ipGHA~sGMw~~LiVs~ 187 (196)
T PF06525_consen 151 QSASGVYNDLPAGYYWLVCGIPGHAESGMWGVLIVSS 187 (196)
T ss_pred ceeeEEEccCCCceEEEEccCCChhhcCCEEEEEEec
Confidence 6665566676799999999999999999999998764
No 54
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=90.98 E-value=3.4 Score=35.97 Aligned_cols=98 Identities=17% Similarity=0.105 Sum_probs=61.3
Q ss_pred ccceEEeecCCEEEEEEecCCCCCCCCCCCCCeeecCCceEEEeecCCCC-Ccc---cccccCC--CCCCccceEEeCCC
Q 016030 260 GSGVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKF-TKE---DEKKFNL--KNPPLKNTAVIFPY 333 (396)
Q Consensus 260 ~~~~~~~~~g~~v~~vi~N~~~~~~~~~~~HP~HLHG~~F~Vl~~g~g~~-~~~---~~~~~n~--~~p~~rDTv~vp~~ 333 (396)
+...+.++.|-.|.++|.|.+. .+ |.+-|+..+.... .+. |.+.+++ ..+.--..=-+..|
T Consensus 83 G~mtIyiPaGw~V~V~f~N~e~------~p-------Hnl~iv~n~t~~P~~~~~s~dgkil~~vG~~~s~~~~NGi~~G 149 (195)
T TIGR03094 83 GAMTIYLPAGWNVYVTFTNYES------LP-------HNLKLLPNSTQTPRGPIWAHTGKIINSTGATTSIYYGNGISSG 149 (195)
T ss_pred CceEEEEeCCCEEEEEEEcCCC------CC-------ccEEEecCCCCCCCccccccCceeEeecccccCcccccccccc
Confidence 4567899999999999999862 24 4555555432111 100 1111111 01111111123345
Q ss_pred cEEEEEEEcCCCeeeEEeecchhhhhcCcEEEEeecc
Q 016030 334 GWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALGV 370 (396)
Q Consensus 334 g~~~irf~adnpG~w~~HCHi~~H~~~GM~~~~~~~~ 370 (396)
....+-|.+-.||.+.+=|-+.-|.+.||-..+++..
T Consensus 150 qs~sg~~~~~~~G~YwlvCgipGHAesGMw~~lIVSs 186 (195)
T TIGR03094 150 HSRSGWWNDTSAGKYWLVCGITGHAESGMWAVVIVSS 186 (195)
T ss_pred ceeEEEeccCCCeeEEEEcccCChhhcCcEEEEEEec
Confidence 5666777778999999999999999999998887754
No 55
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=90.66 E-value=1.2 Score=37.74 Aligned_cols=72 Identities=13% Similarity=0.128 Sum_probs=42.1
Q ss_pred eEEEEcCCCeEEEEEEecCccceEEEEEeCceeE--E-EEeCCceeeeeEeceEEe---cCCce--EEEEEeeCCCCCcc
Q 016030 49 QILHVQPNKTYRLRIASTTALASLNLAVKNHKMV--V-VEADGNYVQPFEVDDMDI---YSGES--YSVLLTTNQDPSYN 120 (396)
Q Consensus 49 ~~~~v~~G~~yRlRlINa~~~~~~~~sId~h~l~--V-Ia~DG~~v~P~~v~~l~i---~~GqR--yDVlv~~~~~~~~~ 120 (396)
+.|++++|++++|++.|........|.|..+..- . -+.||....+ +.-.+ .+|+. .++..++++ +| .
T Consensus 52 P~I~v~~Gd~V~v~v~N~~~~~~H~~~I~~~g~~~~~~p~mdG~~~~~---~~~i~p~~~~g~~~~~~~tf~f~~-aG-t 126 (148)
T TIGR03095 52 PTIVIPEGVTVHFTVINTDTDSGHNFDISKRGPPYPYMPGMDGLGFVA---GTGFLPPPKSGKFGYTDFTYHFST-AG-T 126 (148)
T ss_pred CEEEEcCCCEEEEEEEeCCCCccccEEeecCCCccccccccCCCCccc---cCcccCCCCCCccceeEEEEECCC-Ce-E
Confidence 4677899999999999997633334444443211 1 1356654211 11112 23544 478888875 44 9
Q ss_pred eEEEE
Q 016030 121 YWISA 125 (396)
Q Consensus 121 y~ir~ 125 (396)
||..-
T Consensus 127 ywyhC 131 (148)
T TIGR03095 127 YWYLC 131 (148)
T ss_pred EEEEc
Confidence 99863
No 56
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=87.68 E-value=4.6 Score=32.72 Aligned_cols=73 Identities=22% Similarity=0.313 Sum_probs=46.9
Q ss_pred eEEeecCCEEEEEEecCCCCCCCCCCCCCeeecCCceEEEeecCCCCCcccccccCCCCCCccceEEeCCCcEEEEEEEc
Q 016030 263 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 342 (396)
Q Consensus 263 ~~~~~~g~~v~~vi~N~~~~~~~~~~~HP~HLHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~a 342 (396)
.+.++.|++|.|+-++. ...|- |.+.+.+.|+. ......+++...+.|
T Consensus 43 ~ltV~~GdTVtw~~~~d-------~~~Hn---------V~s~~~~~f~s--------------~~~~~~~G~t~s~Tf-- 90 (115)
T TIGR03102 43 AIRVDPGTTVVWEWTGE-------GGGHN---------VVSDGDGDLDE--------------SERVSEEGTTYEHTF-- 90 (115)
T ss_pred EEEECCCCEEEEEECCC-------CCCEE---------EEECCCCCccc--------------cccccCCCCEEEEEe--
Confidence 47899999999974432 12343 23333233321 111234566666666
Q ss_pred CCCeeeEEeecchhhhhcCcEEEEeec
Q 016030 343 DNPGAWAFHCHIEPHFHIGMGVVLALG 369 (396)
Q Consensus 343 dnpG~w~~HCHi~~H~~~GM~~~~~~~ 369 (396)
+.||.+.|+|= .|...||...+.|+
T Consensus 91 ~~~G~Y~Y~C~--pH~~~gM~G~I~V~ 115 (115)
T TIGR03102 91 EEPGIYLYVCV--PHEALGMKGAVVVE 115 (115)
T ss_pred cCCcEEEEEcc--CCCCCCCEEEEEEC
Confidence 68999999998 89999999888763
No 57
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=87.35 E-value=3.8 Score=36.64 Aligned_cols=73 Identities=21% Similarity=0.211 Sum_probs=50.8
Q ss_pred ceEEeecCCEEEEEEecCCCCCCCCCCCCCeeecCCceEEEeecCCCCCcccccccCCCCCCccceEEeCCCcEEEEEEE
Q 016030 262 GVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFV 341 (396)
Q Consensus 262 ~~~~~~~g~~v~~vi~N~~~~~~~~~~~HP~HLHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~ 341 (396)
+.+.++.|+.|++.+.+.| ..|.|.+-+... ..| +.||....+.|.
T Consensus 117 ~~l~vp~g~~v~~~~ts~D-------V~Hsf~ip~~~~------------------------k~d---a~PG~~~~~~~~ 162 (201)
T TIGR02866 117 NELVVPAGTPVRLQVTSKD-------VIHSFWVPELGG------------------------KID---AIPGQYNALWFN 162 (201)
T ss_pred CEEEEEcCCEEEEEEEeCc-------hhhcccccccCc------------------------eEE---ecCCcEEEEEEE
Confidence 3588999999999999875 355555433322 122 446788889999
Q ss_pred cCCCeeeEEeecchhhh-hcCcEEEEee
Q 016030 342 ADNPGAWAFHCHIEPHF-HIGMGVVLAL 368 (396)
Q Consensus 342 adnpG~w~~HCHi~~H~-~~GM~~~~~~ 368 (396)
++.||.+...|--.-.. ...|...+.+
T Consensus 163 ~~~~G~y~~~c~e~cG~~h~~M~~~v~v 190 (201)
T TIGR02866 163 ADEPGVYYGYCAELCGAGHSLMLFKVVV 190 (201)
T ss_pred eCCCEEEEEEehhhCCcCccCCeEEEEE
Confidence 99999999999973222 2556655543
No 58
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=86.93 E-value=2 Score=33.61 Aligned_cols=67 Identities=19% Similarity=0.285 Sum_probs=38.0
Q ss_pred CceEEEEcCCCeEEEEEEecCccceEEEEEeCceeEEEEeCCc-eeee-eEeceEEecCCceEEEEEeeCCCCCcceEEE
Q 016030 47 APQILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGN-YVQP-FEVDDMDIYSGESYSVLLTTNQDPSYNYWIS 124 (396)
Q Consensus 47 ~~~~~~v~~G~~yRlRlINa~~~~~~~~sId~h~l~VIa~DG~-~v~P-~~v~~l~i~~GqRyDVlv~~~~~~~~~y~ir 124 (396)
.|..++|++|++++|. |.+.. ..++.++....- ++. ...+ ...+.+.+.||+.+++-++. +| .|...
T Consensus 15 ~P~~i~v~~G~~V~~~--N~~~~-~H~~~~~~~~~~----~~~~~~~~~~~~~~~~~~pG~t~~~tF~~---~G-~y~y~ 83 (99)
T TIGR02656 15 EPAKISIAAGDTVEWV--NNKGG-PHNVVFDEDAVP----AGVKELAKSLSHKDLLNSPGESYEVTFST---PG-TYTFY 83 (99)
T ss_pred eCCEEEECCCCEEEEE--ECCCC-CceEEECCCCCc----cchhhhcccccccccccCCCCEEEEEeCC---CE-EEEEE
Confidence 4568999999997664 76542 233333322100 010 0111 12256788999999996654 44 77654
No 59
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=85.84 E-value=5.8 Score=29.88 Aligned_cols=71 Identities=20% Similarity=0.240 Sum_probs=41.9
Q ss_pred eEEeecCCEEEEEEecCCCCCCCCCCCCCeeecCCceEEEeecCCCCCcccccccCCCCCCccceEEeCCCcEEEEEEEc
Q 016030 263 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 342 (396)
Q Consensus 263 ~~~~~~g~~v~~vi~N~~~~~~~~~~~HP~HLHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~a 342 (396)
.+.+..|++|.|+ |.+ ...|-.+++...+ +.. .+.. ..+.++.... ++.
T Consensus 12 ~i~v~~GdtVt~~--N~d------~~~Hnv~~~~g~~-------~~~-------------~~~~-~~~~~g~~~~--~tf 60 (83)
T TIGR02657 12 ELHVKVGDTVTWI--NRE------AMPHNVHFVAGVL-------GEA-------------ALKG-PMMKKEQAYS--LTF 60 (83)
T ss_pred EEEECCCCEEEEE--ECC------CCCccEEecCCCC-------ccc-------------cccc-cccCCCCEEE--EEC
Confidence 4788999999884 544 3467777543211 111 0111 1234455444 556
Q ss_pred CCCeeeEEeecchhhhhcCcEEEEee
Q 016030 343 DNPGAWAFHCHIEPHFHIGMGVVLAL 368 (396)
Q Consensus 343 dnpG~w~~HCHi~~H~~~GM~~~~~~ 368 (396)
+.||.|.|||=+ |- +|...+.|
T Consensus 61 ~~~G~y~y~C~~--Hp--~M~G~v~V 82 (83)
T TIGR02657 61 TEAGTYDYHCTP--HP--FMRGKVVV 82 (83)
T ss_pred CCCEEEEEEcCC--CC--CCeEEEEE
Confidence 789999999986 54 47665544
No 60
>PF14344 DUF4397: Domain of unknown function (DUF4397)
Probab=84.95 E-value=19 Score=29.04 Aligned_cols=39 Identities=15% Similarity=0.242 Sum_probs=22.9
Q ss_pred CceeEEEEeCCcee--eeeEeceEEecCCceEEEEEeeCCC
Q 016030 78 NHKMVVVEADGNYV--QPFEVDDMDIYSGESYSVLLTTNQD 116 (396)
Q Consensus 78 ~h~l~VIa~DG~~v--~P~~v~~l~i~~GqRyDVlv~~~~~ 116 (396)
.++++|-...+..- .|.....+.|.+|..|.+++.-...
T Consensus 44 ~~~i~v~~~g~~~~~~~~l~~~~i~l~~g~~yTl~~~g~~~ 84 (122)
T PF14344_consen 44 TYTIEVTPAGTTPDVSTPLLSTTITLEAGKSYTLFAVGTAA 84 (122)
T ss_pred eEEEEEEECCCCCccceEEEeccEEEcCCCEEEEEEECCCC
Confidence 35566655555532 2455566777777777777765543
No 61
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=83.11 E-value=5.2 Score=30.24 Aligned_cols=65 Identities=18% Similarity=0.244 Sum_probs=31.7
Q ss_pred EEEEEecCccceEEEEEe-Cc--eeEEEEeCCceee--------eeEeceEEecCCceEEEEEeeCCCC--CcceEEEE
Q 016030 60 RLRIASTTALASLNLAVK-NH--KMVVVEADGNYVQ--------PFEVDDMDIYSGESYSVLLTTNQDP--SYNYWISA 125 (396)
Q Consensus 60 RlRlINa~~~~~~~~sId-~h--~l~VIa~DG~~v~--------P~~v~~l~i~~GqRyDVlv~~~~~~--~~~y~ir~ 125 (396)
.|++.|.+.. .+.|.+. |+ +|.|...+|..|- -+......|.|||...+-...+... .|+|.+.+
T Consensus 5 ~l~v~N~s~~-~v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~FtQal~~~~l~pGe~~~~~~~~~~~~~~~G~Y~~~a 82 (82)
T PF12690_consen 5 TLTVTNNSDE-PVTLQFPSGQRYDFVVKDKEGKEVWRWSDGKMFTQALQEETLEPGESLTYEETWDLKDLSPGEYTLEA 82 (82)
T ss_dssp EEEEEE-SSS--EEEEESSS--EEEEEE-TT--EEEETTTT-------EEEEE-TT-EEEEEEEESS----SEEEEEEE
T ss_pred EEEEEeCCCC-eEEEEeCCCCEEEEEEECCCCCEEEEecCCchhhheeeEEEECCCCEEEEEEEECCCCCCCceEEEeC
Confidence 4555555542 3444443 22 3444444555551 1234678899999988888877654 56998764
No 62
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=82.73 E-value=5.7 Score=35.13 Aligned_cols=74 Identities=16% Similarity=0.235 Sum_probs=47.6
Q ss_pred eEEEEcCCCeEEEEEEecCccce-EEEEEeCc---eeEEEEeCCceee-e----eEeceEEecCCceEEEEEeeCCCCCc
Q 016030 49 QILHVQPNKTYRLRIASTTALAS-LNLAVKNH---KMVVVEADGNYVQ-P----FEVDDMDIYSGESYSVLLTTNQDPSY 119 (396)
Q Consensus 49 ~~~~v~~G~~yRlRlINa~~~~~-~~~sId~h---~l~VIa~DG~~v~-P----~~v~~l~i~~GqRyDVlv~~~~~~~~ 119 (396)
.++.|..|.++.|+|+|.+.+.. +.+-..+- ..-.|..||.-+. + -....--|..||++..+...- .+|
T Consensus 86 m~i~VPAGw~V~i~f~N~~~l~Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s~~~~~~~l-~aG- 163 (196)
T PF06525_consen 86 MTIYVPAGWNVQITFTNQESLPHNLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQSASGVYNDL-PAG- 163 (196)
T ss_pred EEEEEcCCCEEEEEEEcCCCCCeeEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCceeeEEEccC-CCc-
Confidence 57889999999999999987643 22222221 2456777776551 1 111223467999999776532 354
Q ss_pred ceEEE
Q 016030 120 NYWIS 124 (396)
Q Consensus 120 ~y~ir 124 (396)
.||+.
T Consensus 164 ~Ywlv 168 (196)
T PF06525_consen 164 YYWLV 168 (196)
T ss_pred eEEEE
Confidence 99996
No 63
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=80.85 E-value=3.3 Score=35.13 Aligned_cols=74 Identities=15% Similarity=0.263 Sum_probs=51.9
Q ss_pred CceEEEEcCCCeEEEEEEecCccceEEEEEe------CceeEEEEeCCceeeeeEeceEEecCCceEEEEEeeCCCCCcc
Q 016030 47 APQILHVQPNKTYRLRIASTTALASLNLAVK------NHKMVVVEADGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYN 120 (396)
Q Consensus 47 ~~~~~~v~~G~~yRlRlINa~~~~~~~~sId------~h~l~VIa~DG~~v~P~~v~~l~i~~GqRyDVlv~~~~~~~~~ 120 (396)
.+..++++.|++||+-+-|.+-.-. .|.++ +|.-..+.+| ..+=-..+.+.|.||+.-.+++++.+++ .
T Consensus 61 ~p~~~~v~aG~tv~~v~~n~~el~h-ef~~~~~~~~~~~~~~~~~~~--Dme~d~~~~v~L~PG~s~elvv~ft~~g--~ 135 (158)
T COG4454 61 KPSSFEVKAGETVRFVLKNEGELKH-EFTMDAPDKNLEHVTHMILAD--DMEHDDPNTVTLAPGKSGELVVVFTGAG--K 135 (158)
T ss_pred CCCcccccCCcEEeeeecCcccceE-EEeccCccccchhHHHhhhCC--ccccCCcceeEeCCCCcEEEEEEecCCc--c
Confidence 4567899999999999999986542 34443 2333333444 2233455789999999999999998753 7
Q ss_pred eEEEE
Q 016030 121 YWISA 125 (396)
Q Consensus 121 y~ir~ 125 (396)
|.++-
T Consensus 136 ye~~C 140 (158)
T COG4454 136 YEFAC 140 (158)
T ss_pred EEEEe
Confidence 87753
No 64
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=76.85 E-value=6.3 Score=36.01 Aligned_cols=59 Identities=15% Similarity=0.222 Sum_probs=43.8
Q ss_pred eEEeecCCEEEEEEecCCCCCCCCCCCCCeeecCCceEEEeecCCCCCcccccccCCCCCCccceEEeCCCcEEEEEEEc
Q 016030 263 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 342 (396)
Q Consensus 263 ~~~~~~g~~v~~vi~N~~~~~~~~~~~HP~HLHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~a 342 (396)
.+.++.|+.|++.+...|. -|. |+|-+-+ ..+|.+ ||-...+.|++
T Consensus 140 el~lP~g~pV~~~ltS~DV-------iHS-------F~VP~l~-----------------~K~Dai---PG~~n~~~~~~ 185 (226)
T TIGR01433 140 EIAFPVNTPINFKITSNSV-------MNS-------FFIPQLG-----------------SQIYAM---AGMQTKLHLIA 185 (226)
T ss_pred eEEEECCCEEEEEEEECch-------hhh-------hhhhhcC-----------------CeeecC---CCceEEEEEEe
Confidence 4789999999999998763 454 4554432 244544 57777889999
Q ss_pred CCCeeeEEeecch
Q 016030 343 DNPGAWAFHCHIE 355 (396)
Q Consensus 343 dnpG~w~~HCHi~ 355 (396)
+.||.+...|--.
T Consensus 186 ~~~G~y~g~CaE~ 198 (226)
T TIGR01433 186 NEPGVYDGISANY 198 (226)
T ss_pred CCCEEEEEEchhh
Confidence 9999999999743
No 65
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=74.79 E-value=13 Score=30.52 Aligned_cols=74 Identities=28% Similarity=0.388 Sum_probs=0.0
Q ss_pred CCCceEEEEcC-CCeEEEEEEecCccceEEEEEeCceeEEE---------------EeCCceeeeeEeceE----EecCC
Q 016030 45 QCAPQILHVQP-NKTYRLRIASTTALASLNLAVKNHKMVVV---------------EADGNYVQPFEVDDM----DIYSG 104 (396)
Q Consensus 45 ~~~~~~~~v~~-G~~yRlRlINa~~~~~~~~sId~h~l~VI---------------a~DG~~v~P~~v~~l----~i~~G 104 (396)
+.+...|+|++ ++.+.+.|-|.|. +.-..=+|++-|. +.|-+||.+-..+.| .|++|
T Consensus 12 ~Fd~~~i~V~a~~k~vtv~l~h~G~---lpk~~MgHN~Vl~k~~d~~~v~~~g~~ag~~~~Yvp~~d~~ViAhTkliggG 88 (125)
T TIGR02695 12 QFNTKSISVPKSCKEFTVNLKHTGK---LPKAVMGHNWVLAKSADMQAVATDGMSAGADNNYVKPGDARVIAHTKVIGGG 88 (125)
T ss_pred cccccEEEEcCCCcEEEEEEecCCc---CchhccCccEEEeccccHHHHHHHHHhcccccCccCCCCcceEEEccccCCC
Q ss_pred ceEEEEEeeCC-CCCcce
Q 016030 105 ESYSVLLTTNQ-DPSYNY 121 (396)
Q Consensus 105 qRyDVlv~~~~-~~~~~y 121 (396)
|..+|-++++. .+|++|
T Consensus 89 es~svtF~~~~l~~g~~Y 106 (125)
T TIGR02695 89 EKTSVTFDVSKLSAGEDY 106 (125)
T ss_pred ceEEEEEECCCCCCCCcc
No 66
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=73.91 E-value=11 Score=26.99 Aligned_cols=47 Identities=26% Similarity=0.465 Sum_probs=29.9
Q ss_pred EEEcCCCeEEEEEEecCccceEEEEEeCceeEEEEeCCceeeeeEeceEEecCCceEEE
Q 016030 51 LHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGNYVQPFEVDDMDIYSGESYSV 109 (396)
Q Consensus 51 ~~v~~G~~yRlRlINa~~~~~~~~sId~h~l~VIa~DG~~v~P~~v~~l~i~~GqRyDV 109 (396)
|++.+|+..+||.-.+ ..|.+..-.++|.. || ..+-+.|.+||++.+
T Consensus 2 ~~L~~g~~~~lr~~~~-----~~l~v~~G~vWlT~-~g------~~~D~~L~~G~~l~l 48 (63)
T PF11142_consen 2 FELAPGETLSLRAAAG-----QRLRVESGRVWLTR-EG------DPDDYWLQAGDSLRL 48 (63)
T ss_pred EEeCCCceEEeEcCCC-----cEEEEccccEEEEC-CC------CCCCEEECCCCEEEe
Confidence 6788999999985433 33777777777754 44 234455666666543
No 67
>PF04151 PPC: Bacterial pre-peptidase C-terminal domain; InterPro: IPR007280 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. This domain is normally found at the C terminus of secreted archaeal and bacterial peptidases, the majority of which belong to MEROPS peptidase families M4 (vibriolysin, IPR001570 from INTERPRO), M9A amd M9B (microbial collangenase, IPR002169 from INTERPRO), M28 (aminopeptidase Ap1, IPR007484 from INTERPRO) and S8 (subtilisin family peptidases, IPR000209 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 4DY5_B 4DXZ_A 4DY3_B 3JQW_A 3JQX_C 1NQJ_B 1NQD_A 2O8O_A 1WMF_A 1WME_A ....
Probab=73.13 E-value=11 Score=27.25 Aligned_cols=65 Identities=14% Similarity=0.290 Sum_probs=37.1
Q ss_pred eEEEEcCCCeEEEEEEecCccceEEEEEeCceeEEEEeCCceeeeeEeceEEecCCceEEEEEeeCCCCCcceEEEEE
Q 016030 49 QILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAG 126 (396)
Q Consensus 49 ~~~~v~~G~~yRlRlINa~~~~~~~~sId~h~l~VIa~DG~~v~P~~v~~l~i~~GqRyDVlv~~~~~~~~~y~ir~~ 126 (396)
+.|+++.|+++++.+-+.+. +..|.|...+|..+....-.. -..+..--+.+.+.+ + |+|+|++.
T Consensus 5 y~f~v~ag~~l~i~l~~~~~---------d~dl~l~~~~g~~~~~~d~~~--~~~~~~~~i~~~~~~-~-GtYyi~V~ 69 (70)
T PF04151_consen 5 YSFTVPAGGTLTIDLSGGSG---------DADLYLYDSNGNSLASYDDSS--QSGGNDESITFTAPA-A-GTYYIRVY 69 (70)
T ss_dssp EEEEESTTEEEEEEECETTS---------SEEEEEEETTSSSCEECCCCT--CETTSEEEEEEEESS-S-EEEEEEEE
T ss_pred EEEEEcCCCEEEEEEcCCCC---------CeEEEEEcCCCCchhhheecC--CCCCCccEEEEEcCC-C-EEEEEEEE
Confidence 67999999999988866665 444777777776443321111 011211222233322 3 48999864
No 68
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=71.47 E-value=9.6 Score=34.54 Aligned_cols=58 Identities=19% Similarity=0.161 Sum_probs=43.9
Q ss_pred eEEeecCCEEEEEEecCCCCCCCCCCCCCeeecCCceEEEeecCCCCCcccccccCCCCCCccceEEeCCCcEEEEEEEc
Q 016030 263 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 342 (396)
Q Consensus 263 ~~~~~~g~~v~~vi~N~~~~~~~~~~~HP~HLHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~a 342 (396)
.+.++.|+.|++.+...|. -| +|+|=+.+ ..+|.+ ||-...+.|.+
T Consensus 131 ~l~iP~g~~v~~~ltS~DV-------iH-------sf~vP~l~-----------------~k~dai---PG~~~~~~~~~ 176 (217)
T TIGR01432 131 YLNIPKDRPVLFKLQSADT-------MT-------SFWIPQLG-----------------GQKYAM---TGMTMNWYLQA 176 (217)
T ss_pred cEEEECCCEEEEEEECCch-------hh-------hhhchhhC-----------------ceeecC---CCceEEEEEEe
Confidence 4789999999999998763 34 45554332 345554 57788899999
Q ss_pred CCCeeeEEeecc
Q 016030 343 DNPGAWAFHCHI 354 (396)
Q Consensus 343 dnpG~w~~HCHi 354 (396)
+.||.+--.|=-
T Consensus 177 ~~~G~y~g~Cae 188 (217)
T TIGR01432 177 DQVGTYRGRNAN 188 (217)
T ss_pred CCCEEEEEEehh
Confidence 999999999963
No 69
>PRK02888 nitrous-oxide reductase; Validated
Probab=67.82 E-value=19 Score=37.78 Aligned_cols=60 Identities=15% Similarity=0.267 Sum_probs=36.5
Q ss_pred CceEEEEcCCCeEEEEEEecCc--cceEEEEEeCceeEEEEeCCceeeeeEeceEEecCCceEEEEEeeCCCCCcceEEE
Q 016030 47 APQILHVQPNKTYRLRIASTTA--LASLNLAVKNHKMVVVEADGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWIS 124 (396)
Q Consensus 47 ~~~~~~v~~G~~yRlRlINa~~--~~~~~~sId~h~l~VIa~DG~~v~P~~v~~l~i~~GqRyDVlv~~~~~~~~~y~ir 124 (396)
.+..|+|+.|+.++|+|-|... .-..-|+|+++.+ .+.+.||+.-.|-+.+++. | .||+.
T Consensus 553 ~p~~i~Vk~GDeVt~~lTN~d~~~DViHGF~Ip~~nI----------------~~dv~PG~t~svtF~adkP-G-vy~~~ 614 (635)
T PRK02888 553 GLREFTVKQGDEVTVIVTNLDKVEDLTHGFAIPNYGV----------------NMEVAPQATASVTFTADKP-G-VYWYY 614 (635)
T ss_pred CCceEEecCCCEEEEEEEeCCcccccccceeecccCc----------------cEEEcCCceEEEEEEcCCC-E-EEEEE
Confidence 4455666666666666666422 1222333333322 2457799999999998874 3 88875
No 70
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=67.59 E-value=23 Score=32.82 Aligned_cols=72 Identities=19% Similarity=0.126 Sum_probs=50.8
Q ss_pred ceEEeecCCEEEEEEecCCCCCCCCCCCCCeeecCCceEEEeecCCCCCcccccccCCCCCCccceEEeCCCcEEEEEEE
Q 016030 262 GVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFV 341 (396)
Q Consensus 262 ~~~~~~~g~~v~~vi~N~~~~~~~~~~~HP~HLHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~ 341 (396)
+.+.++.|+.|++.+...| .-|-|.+-+..+++- +.||-...+.+.
T Consensus 137 n~l~lPv~~~V~f~ltS~D-------ViHsF~IP~l~~k~d---------------------------~iPG~~~~~~~~ 182 (247)
T COG1622 137 NELVLPVGRPVRFKLTSAD-------VIHSFWIPQLGGKID---------------------------AIPGMTTELWLT 182 (247)
T ss_pred ceEEEeCCCeEEEEEEech-------hceeEEecCCCceee---------------------------ecCCceEEEEEe
Confidence 4578999999999999875 456666655544432 334667788899
Q ss_pred cCCCeeeEEeecchhhhhc-CcEEEEe
Q 016030 342 ADNPGAWAFHCHIEPHFHI-GMGVVLA 367 (396)
Q Consensus 342 adnpG~w~~HCHi~~H~~~-GM~~~~~ 367 (396)
++.||.+..+|+..-=... .|-..+.
T Consensus 183 ~~~~G~Y~g~Cae~CG~gH~~M~~~v~ 209 (247)
T COG1622 183 ANKPGTYRGICAEYCGPGHSFMRFKVI 209 (247)
T ss_pred cCCCeEEEEEcHhhcCCCcccceEEEE
Confidence 9999999999997643333 3444443
No 71
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=65.97 E-value=55 Score=24.70 Aligned_cols=69 Identities=22% Similarity=0.286 Sum_probs=42.6
Q ss_pred EEcCCCeEE--EEEEecCccceEEEEEeCceeEEEEeCCceeeeeEeceE-EecCCceEEEEEeeCCCCCcceEEEEEec
Q 016030 52 HVQPNKTYR--LRIASTTALASLNLAVKNHKMVVVEADGNYVQPFEVDDM-DIYSGESYSVLLTTNQDPSYNYWISAGVR 128 (396)
Q Consensus 52 ~v~~G~~yR--lRlINa~~~~~~~~sId~h~l~VIa~DG~~v~P~~v~~l-~i~~GqRyDVlv~~~~~~~~~y~ir~~~~ 128 (396)
.+.+|+.++ +.+-|.|....-.+.+. +-.||..+ ....| .|.+|+...+-+.......|.|.|++...
T Consensus 14 ~~~~g~~~~i~~~V~N~G~~~~~~~~v~------~~~~~~~~---~~~~i~~L~~g~~~~v~~~~~~~~~G~~~i~~~iD 84 (101)
T PF07705_consen 14 NVVPGEPVTITVTVKNNGTADAENVTVR------LYLDGNSV---STVTIPSLAPGESETVTFTWTPPSPGSYTIRVVID 84 (101)
T ss_dssp EEETTSEEEEEEEEEE-SSS-BEEEEEE------EEETTEEE---EEEEESEB-TTEEEEEEEEEE-SS-CEEEEEEEES
T ss_pred cccCCCEEEEEEEEEECCCCCCCCEEEE------EEECCcee---ccEEECCcCCCcEEEEEEEEEeCCCCeEEEEEEEe
Confidence 457788765 56789987654444443 34566666 33344 78999998888887654345999988765
Q ss_pred C
Q 016030 129 G 129 (396)
Q Consensus 129 ~ 129 (396)
.
T Consensus 85 ~ 85 (101)
T PF07705_consen 85 P 85 (101)
T ss_dssp T
T ss_pred e
Confidence 4
No 72
>PF04379 DUF525: Protein of unknown function (DUF525); InterPro: IPR007474 This domain is found in the bacterial protein ApaG and at the C termini of some F-box proteins (IPR001810 from INTERPRO). F-box proteins contain a carboxy-terminal domain that interacts with protein substrates []. The ApaG domain is ~125 amino acids in length, and is named after the bacterial ApaG protein, of which it forms the core. The Salmonella typhimurium ApaG domain protein, CorD, is involved in Co(2+) resistance and Mg(2+) efflux. Tertiary structures from different ApaG proteins show a fold of several beta-sheets. The ApaG domain may be involved in protein-protein interactions which could be implicated in substrate-specificity [, , ].; PDB: 2F1E_A 1XVS_A 1TZA_A 1XQ4_D.
Probab=65.72 E-value=23 Score=27.25 Aligned_cols=49 Identities=22% Similarity=0.406 Sum_probs=22.6
Q ss_pred eEEEEEEecCccceEEEEEeCceeEEEEeCCcee--e-eeEe-ceEEecCCceEEE
Q 016030 58 TYRLRIASTTALASLNLAVKNHKMVVVEADGNYV--Q-PFEV-DDMDIYSGESYSV 109 (396)
Q Consensus 58 ~yRlRlINa~~~~~~~~sId~h~l~VIa~DG~~v--~-P~~v-~~l~i~~GqRyDV 109 (396)
.|++||-|.+... +.+-.....|...||..- + +=.+ ..=.|.|||.|..
T Consensus 15 ~Y~I~I~N~~~~~---vqL~sR~W~I~d~~g~~~~V~G~GVVG~~P~L~pGe~f~Y 67 (90)
T PF04379_consen 15 AYRIRIENHSDES---VQLLSRHWIITDADGHVEEVEGEGVVGQQPVLAPGESFEY 67 (90)
T ss_dssp EEEEEEEE-SSS----EEEEEEEEEEEETTS-EEEEEEESBTTB--EE-TTEEEEE
T ss_pred EEEEEEEECCCCC---EEEEccEEEEEeCCCCEEEEECCceEccCceECCCCcEEE
Confidence 4899999998862 333344444444444221 1 0001 2224788886543
No 73
>MTH00139 COX2 cytochrome c oxidase subunit II; Provisional
Probab=65.60 E-value=24 Score=32.21 Aligned_cols=62 Identities=16% Similarity=0.296 Sum_probs=45.4
Q ss_pred ccceEEeecCCEEEEEEecCCCCCCCCCCCCCeeecCCceEEEeecCCCCCcccccccCCCCCCccceEEeCCCcEEEEE
Q 016030 260 GSGVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALR 339 (396)
Q Consensus 260 ~~~~~~~~~g~~v~~vi~N~~~~~~~~~~~HP~HLHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~ir 339 (396)
..+.+.++.|+.+++.+...| .-|. |+|-+-| .++|.+ ||-...+.
T Consensus 138 ~~n~l~lP~~~~v~~~~tS~D-------ViHs-------f~vP~l~-----------------~K~Dai---PG~~n~~~ 183 (226)
T MTH00139 138 VDNRLVLPYKSNIRALITAAD-------VLHS-------WTVPSLG-----------------VKIDAV---PGRLNQVG 183 (226)
T ss_pred cCceEEEecCCEEEEEEecCc-------cccc-------eeccccC-----------------ccccCC---CCcEEEEE
Confidence 345689999999999999876 3454 4544432 345554 46677788
Q ss_pred EEcCCCeeeEEeecch
Q 016030 340 FVADNPGAWAFHCHIE 355 (396)
Q Consensus 340 f~adnpG~w~~HCHi~ 355 (396)
|.++.||.+..-|--.
T Consensus 184 ~~~~~~G~y~g~CsE~ 199 (226)
T MTH00139 184 FFINRPGVFYGQCSEI 199 (226)
T ss_pred EEcCCCEEEEEEChhh
Confidence 9999999999999754
No 74
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=63.92 E-value=58 Score=26.66 Aligned_cols=62 Identities=13% Similarity=0.208 Sum_probs=41.2
Q ss_pred EEEEcCCCeEEEEEEecCccceEEEEEeCceeEEEEeCCcee-------eeeEeceEEecCCceEEEEEeeCCC
Q 016030 50 ILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGNYV-------QPFEVDDMDIYSGESYSVLLTTNQD 116 (396)
Q Consensus 50 ~~~v~~G~~yRlRlINa~~~~~~~~sId~h~l~VIa~DG~~v-------~P~~v~~l~i~~GqRyDVlv~~~~~ 116 (396)
.|+++.--+|+|++-.-+ ..+|.|||..+ |..++..- .+.....+.+-.|++|+|-|+..+.
T Consensus 53 ~~~~~~~G~y~f~~~~~d---~~~l~idg~~v--id~~~~~~~~~~~~~~~~~~~~v~l~~g~~y~i~i~y~~~ 121 (145)
T PF07691_consen 53 YFKPPETGTYTFSLTSDD---GARLWIDGKLV--IDNWGNQGGGFFNSGPSSTSGTVTLEAGGKYPIRIEYFNR 121 (145)
T ss_dssp EEEESSSEEEEEEEEESS---EEEEEETTEEE--EECSCTTTSTTTTTSBCCEEEEEEE-TT-EEEEEEEEEEC
T ss_pred EEecccCceEEEEEEecc---cEEEEECCEEE--EcCCccccccccccccceEEEEEEeeCCeeEEEEEEEEEC
Confidence 355555555999988333 46777888764 66665443 4566677889999999999986554
No 75
>smart00758 PA14 domain in bacterial beta-glucosidases other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins, and bacterial toxins.
Probab=63.66 E-value=54 Score=26.69 Aligned_cols=62 Identities=16% Similarity=0.282 Sum_probs=37.6
Q ss_pred EEEcCCCeEEEEEEecCccceEEEEEeCceeEEEEeCCcee-eeeEeceEEecCCceEEEEEeeCCCC
Q 016030 51 LHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGNYV-QPFEVDDMDIYSGESYSVLLTTNQDP 117 (396)
Q Consensus 51 ~~v~~G~~yRlRlINa~~~~~~~~sId~h~l~VIa~DG~~v-~P~~v~~l~i~~GqRyDVlv~~~~~~ 117 (396)
|+++..-.|+|.+...+ ..+|.|+|.. ||..++..- .+.....+.+..|++|.|-|+..+..
T Consensus 52 i~~~~~G~y~f~~~~~~---~~~l~Idg~~--vid~~~~~~~~~~~~~~v~l~~g~~~~i~v~y~~~~ 114 (136)
T smart00758 52 LKPPEDGEYTFSITSDD---GARLWIDGKL--VIDNWGKHEARPSTSSTLYLLAGGTYPIRIEYFEAG 114 (136)
T ss_pred EECCCCccEEEEEEcCC---cEEEEECCcE--EEcCCccCCCccccceeEEEeCCcEEEEEEEEEeCC
Confidence 44443344888885333 3577888763 454443322 23344568888899999888876543
No 76
>PRK02710 plastocyanin; Provisional
Probab=63.57 E-value=25 Score=28.48 Aligned_cols=58 Identities=16% Similarity=0.295 Sum_probs=35.2
Q ss_pred CceEEEEcCCCeEEEEEEecCccceEEEEEeCceeEEEEeCCceeeeeEeceEEecCCceEEEEEeeCCCCCcceEE
Q 016030 47 APQILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWI 123 (396)
Q Consensus 47 ~~~~~~v~~G~~yRlRlINa~~~~~~~~sId~h~l~VIa~DG~~v~P~~v~~l~i~~GqRyDVlv~~~~~~~~~y~i 123 (396)
.|..++|++|++++| +|.+.. ..++.+++ . +......+.+.+|+.+++.++. +| .|..
T Consensus 45 ~P~~i~v~~Gd~V~~--~N~~~~-~H~v~~~~----------~--~~~~~~~~~~~pg~t~~~tF~~---~G-~y~y 102 (119)
T PRK02710 45 EPSTLTIKAGDTVKW--VNNKLA-PHNAVFDG----------A--KELSHKDLAFAPGESWEETFSE---AG-TYTY 102 (119)
T ss_pred eCCEEEEcCCCEEEE--EECCCC-CceEEecC----------C--ccccccccccCCCCEEEEEecC---CE-EEEE
Confidence 457899999998765 576432 23444432 1 1112234668999999977764 33 6644
No 77
>MTH00038 COX2 cytochrome c oxidase subunit II; Provisional
Probab=60.77 E-value=31 Score=31.54 Aligned_cols=67 Identities=15% Similarity=0.248 Sum_probs=47.6
Q ss_pred cceEEeecCCEEEEEEecCCCCCCCCCCCCCeeecCCceEEEeecCCCCCcccccccCCCCCCccceEEeCCCcEEEEEE
Q 016030 261 SGVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRF 340 (396)
Q Consensus 261 ~~~~~~~~g~~v~~vi~N~~~~~~~~~~~HP~HLHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf 340 (396)
.+.+.++.|+.+++.+...| .-|.|.+-... .+.|.+ ||....+.|
T Consensus 139 dn~lvlP~~~~v~~~~tS~D-------ViHsf~iP~lg------------------------~k~dai---PG~~~~~~~ 184 (229)
T MTH00038 139 DNRLVLPYQTPIRVLVSSAD-------VLHSWAVPSLG------------------------VKMDAV---PGRLNQTTF 184 (229)
T ss_pred CceEEEecCeEEEEEEEECC-------ccccccccccC------------------------ceeecC---CCceEEEEE
Confidence 35689999999999999875 45655544332 233433 566777889
Q ss_pred EcCCCeeeEEeecchhhhhcC
Q 016030 341 VADNPGAWAFHCHIEPHFHIG 361 (396)
Q Consensus 341 ~adnpG~w~~HCHi~~H~~~G 361 (396)
.++.||.+...|--.--....
T Consensus 185 ~~~~~G~~~g~Cse~CG~~Hs 205 (229)
T MTH00038 185 FISRTGLFYGQCSEICGANHS 205 (229)
T ss_pred EcCCCEEEEEEcccccCcCcC
Confidence 999999999999876544434
No 78
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=60.75 E-value=43 Score=28.77 Aligned_cols=60 Identities=13% Similarity=0.240 Sum_probs=43.7
Q ss_pred ceEEeecCCEEEEEEecCCCCCCCCCCCCCeeecCCceEEEeecCCCCCcccccccCCCCCCccceEEeCCCcEEEEEEE
Q 016030 262 GVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFV 341 (396)
Q Consensus 262 ~~~~~~~g~~v~~vi~N~~~~~~~~~~~HP~HLHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~ 341 (396)
+.+.++.|+.+++.+...| .-|.|.+-.... ..|. -||-...+.|.
T Consensus 73 n~LvLP~g~~Vr~~lTS~D-------VIHSF~VP~lgv------------------------K~Da---vPGr~n~l~~~ 118 (162)
T PTZ00047 73 KRLTLPTRTHIRFLITATD-------VIHSWSVPSLGI------------------------KADA---IPGRLHKINTF 118 (162)
T ss_pred CCEEEeCCCEEEEEEEeCc-------cceeeeccccCc------------------------eeec---cCCceEEEEEe
Confidence 4578999999999999875 456665544422 2222 24566678889
Q ss_pred cCCCeeeEEeecch
Q 016030 342 ADNPGAWAFHCHIE 355 (396)
Q Consensus 342 adnpG~w~~HCHi~ 355 (396)
++.||.+...|.-.
T Consensus 119 ~~~~G~y~gqCsEl 132 (162)
T PTZ00047 119 ILREGVFYGQCSEM 132 (162)
T ss_pred cCCCeEEEEEcchh
Confidence 99999999999865
No 79
>MTH00129 COX2 cytochrome c oxidase subunit II; Provisional
Probab=60.04 E-value=31 Score=31.61 Aligned_cols=62 Identities=16% Similarity=0.308 Sum_probs=45.8
Q ss_pred cceEEeecCCEEEEEEecCCCCCCCCCCCCCeeecCCceEEEeecCCCCCcccccccCCCCCCccceEEeCCCcEEEEEE
Q 016030 261 SGVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRF 340 (396)
Q Consensus 261 ~~~~~~~~g~~v~~vi~N~~~~~~~~~~~HP~HLHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf 340 (396)
.+.+.++.|+.+++.+...|. - |.|+|-+.| ...|. -||....+-|
T Consensus 139 ~n~lvlP~~~~v~~~~tS~DV-------i-------Hsf~ip~~~-----------------~k~da---~PG~~~~~~~ 184 (230)
T MTH00129 139 DHRMVVPVESPIRVLVSAEDV-------L-------HSWAVPALG-----------------VKMDA---VPGRLNQTAF 184 (230)
T ss_pred cceEEEecCcEEEEEEEeCcc-------c-------cceeccccC-----------------Ccccc---CCCceEEEEE
Confidence 356889999999999998763 3 456665553 23333 3577778889
Q ss_pred EcCCCeeeEEeecchh
Q 016030 341 VADNPGAWAFHCHIEP 356 (396)
Q Consensus 341 ~adnpG~w~~HCHi~~ 356 (396)
.++.||.+...|.-.=
T Consensus 185 ~~~~~G~~~g~C~e~C 200 (230)
T MTH00129 185 IASRPGVFYGQCSEIC 200 (230)
T ss_pred EeCCceEEEEEChhhc
Confidence 9999999999998753
No 80
>MTH00023 COX2 cytochrome c oxidase subunit II; Validated
Probab=59.60 E-value=34 Score=31.55 Aligned_cols=72 Identities=17% Similarity=0.301 Sum_probs=49.1
Q ss_pred cceEEeecCCEEEEEEecCCCCCCCCCCCCCeeecCCceEEEeecCCCCCcccccccCCCCCCccceEEeCCCcEEEEEE
Q 016030 261 SGVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRF 340 (396)
Q Consensus 261 ~~~~~~~~g~~v~~vi~N~~~~~~~~~~~HP~HLHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf 340 (396)
.+.+.++.|+.+++.+...| .-|.|.+-.... .+|.+ ||-...+.|
T Consensus 150 ~n~lvlP~~~~v~~~~tS~D-------ViHsf~iP~lgv------------------------K~Dai---PG~~n~~~~ 195 (240)
T MTH00023 150 DNRLVVPINTHVRILVTGAD-------VLHSFAVPSLGL------------------------KIDAV---PGRLNQTGF 195 (240)
T ss_pred CceEEEecCCEEEEEEEcCC-------cccceeecccCc------------------------eeecC---CCcceeEEE
Confidence 35689999999999999875 456655544322 33333 455667889
Q ss_pred EcCCCeeeEEeecchhhhhcC-cEEEE
Q 016030 341 VADNPGAWAFHCHIEPHFHIG-MGVVL 366 (396)
Q Consensus 341 ~adnpG~w~~HCHi~~H~~~G-M~~~~ 366 (396)
.++.||.+...|.-.--.... |-..+
T Consensus 196 ~~~~~G~y~g~C~e~CG~~Hs~M~~~v 222 (240)
T MTH00023 196 FIKRPGVFYGQCSEICGANHSFMPIVI 222 (240)
T ss_pred EcCCCEEEEEEchhhcCcCccCCeEEE
Confidence 999999999999866544333 44333
No 81
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=58.88 E-value=40 Score=30.78 Aligned_cols=73 Identities=19% Similarity=0.295 Sum_probs=50.6
Q ss_pred cceEEeecCCEEEEEEecCCCCCCCCCCCCCeeecCCceEEEeecCCCCCcccccccCCCCCCccceEEeCCCcEEEEEE
Q 016030 261 SGVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRF 340 (396)
Q Consensus 261 ~~~~~~~~g~~v~~vi~N~~~~~~~~~~~HP~HLHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf 340 (396)
.+.+.++.|+.|++.+.+.| .-|.|.+-....+ .| +-||....+.|
T Consensus 139 ~n~l~lP~~~~v~~~~ts~D-------ViHsf~ip~~~~k------------------------~d---~~Pg~~~~~~~ 184 (228)
T MTH00140 139 DNRLVLPYSVDTRVLVTSAD-------VIHSWTVPSLGVK------------------------VD---AIPGRLNQLSF 184 (228)
T ss_pred CCeEEEeeCcEEEEEEEcCc-------cccceeccccCce------------------------eE---CCCCcceeEEE
Confidence 35689999999999999976 4565555443222 22 33577778889
Q ss_pred EcCCCeeeEEeecchhhhh-cCcEEEEe
Q 016030 341 VADNPGAWAFHCHIEPHFH-IGMGVVLA 367 (396)
Q Consensus 341 ~adnpG~w~~HCHi~~H~~-~GM~~~~~ 367 (396)
.++.||.+...|.-.-... ..|-..+.
T Consensus 185 ~~~~~g~y~~~C~e~CG~~H~~M~~~v~ 212 (228)
T MTH00140 185 EPKRPGVFYGQCSEICGANHSFMPIVVE 212 (228)
T ss_pred EeCCCEEEEEECccccCcCcCCCeEEEE
Confidence 9999999999999775543 33544443
No 82
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=58.65 E-value=56 Score=26.99 Aligned_cols=33 Identities=27% Similarity=0.571 Sum_probs=25.5
Q ss_pred CcEEEEEEEcCCCeeeEEeecchhhhhcCcEEEEeec
Q 016030 333 YGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALG 369 (396)
Q Consensus 333 ~g~~~irf~adnpG~w~~HCHi~~H~~~GM~~~~~~~ 369 (396)
+.....-|.. ||.+.|.|- .|...||-..+.|+
T Consensus 95 ~~s~~~Tfe~--~G~Y~Y~C~--PH~~~gM~G~IvV~ 127 (128)
T COG3794 95 NESFTHTFET--PGEYTYYCT--PHPGMGMKGKIVVG 127 (128)
T ss_pred CcceEEEecc--cceEEEEec--cCCCCCcEEEEEeC
Confidence 3555555544 999999996 79999998888765
No 83
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=56.75 E-value=13 Score=28.96 Aligned_cols=64 Identities=25% Similarity=0.349 Sum_probs=38.7
Q ss_pred CCceEEEEcCCCeEEEEEEecCccceEEEEEeCceeEEEEeCCce--eeeeE----eceEEecCCceEEEEEeeCCCCCc
Q 016030 46 CAPQILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGNY--VQPFE----VDDMDIYSGESYSVLLTTNQDPSY 119 (396)
Q Consensus 46 ~~~~~~~v~~G~~yRlRlINa~~~~~~~~sId~h~l~VIa~DG~~--v~P~~----v~~l~i~~GqRyDVlv~~~~~~~~ 119 (396)
..|..++|++|++++ ++|.... +|++++.+ |+.. .+... -....+.+||.+.+-++ + +|
T Consensus 14 F~P~~i~V~~G~tV~--~~n~~~~--------~Hnv~~~~-~~~~~~~~~~~~~~~~~~~~~~~G~~~~~tF~--~-~G- 78 (99)
T PF00127_consen 14 FDPSEITVKAGDTVT--FVNNDSM--------PHNVVFVA-DGMPAGADSDYVPPGDSSPLLAPGETYSVTFT--K-PG- 78 (99)
T ss_dssp EESSEEEEETTEEEE--EEEESSS--------SBEEEEET-TSSHTTGGHCHHSTTCEEEEBSTTEEEEEEEE--S-SE-
T ss_pred EeCCEEEECCCCEEE--EEECCCC--------CceEEEec-ccccccccccccCccccceecCCCCEEEEEeC--C-Ce-
Confidence 356789999999865 5665222 35555544 3321 11111 15677999999999887 2 43
Q ss_pred ceEEE
Q 016030 120 NYWIS 124 (396)
Q Consensus 120 ~y~ir 124 (396)
.|...
T Consensus 79 ~y~y~ 83 (99)
T PF00127_consen 79 TYEYY 83 (99)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 67543
No 84
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=56.71 E-value=87 Score=23.92 Aligned_cols=71 Identities=18% Similarity=0.204 Sum_probs=42.9
Q ss_pred EcCCCeEEEEEE--ecCccceEEEEEeCc--eeEEEEeCCceeeeeEeceEEecCCceEEEEEeeCCC-CCcceEEEEEe
Q 016030 53 VQPNKTYRLRIA--STTALASLNLAVKNH--KMVVVEADGNYVQPFEVDDMDIYSGESYSVLLTTNQD-PSYNYWISAGV 127 (396)
Q Consensus 53 v~~G~~yRlRlI--Na~~~~~~~~sId~h--~l~VIa~DG~~v~P~~v~~l~i~~GqRyDVlv~~~~~-~~~~y~ir~~~ 127 (396)
.+||+++.||.+ +... . .-...++ .++|..-+|..+.-... ........++.-+..+.. ..|.|.|++..
T Consensus 11 YrPGetV~~~~~~~~~~~-~--~~~~~~~~~~v~i~dp~g~~v~~~~~--~~~~~~G~~~~~~~lp~~~~~G~y~i~~~~ 85 (99)
T PF01835_consen 11 YRPGETVHFRAIVRDLDN-D--FKPPANSPVTVTIKDPSGNEVFRWSV--NTTNENGIFSGSFQLPDDAPLGTYTIRVKT 85 (99)
T ss_dssp E-TTSEEEEEEEEEEECT-T--CSCESSEEEEEEEEETTSEEEEEEEE--EETTCTTEEEEEEE--SS---EEEEEEEEE
T ss_pred cCCCCEEEEEEEEecccc-c--cccccCCceEEEEECCCCCEEEEEEe--eeeCCCCEEEEEEECCCCCCCEeEEEEEEE
Confidence 489999999999 6662 1 0111222 46777777777743333 234567778888887664 34699999876
Q ss_pred c
Q 016030 128 R 128 (396)
Q Consensus 128 ~ 128 (396)
.
T Consensus 86 ~ 86 (99)
T PF01835_consen 86 D 86 (99)
T ss_dssp T
T ss_pred c
Confidence 4
No 85
>MTH00154 COX2 cytochrome c oxidase subunit II; Provisional
Probab=55.42 E-value=40 Score=30.79 Aligned_cols=61 Identities=23% Similarity=0.465 Sum_probs=44.2
Q ss_pred cceEEeecCCEEEEEEecCCCCCCCCCCCCCeeecCCceEEEeecCCCCCcccccccCCCCCCccceEEeCCCcEEEEEE
Q 016030 261 SGVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRF 340 (396)
Q Consensus 261 ~~~~~~~~g~~v~~vi~N~~~~~~~~~~~HP~HLHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf 340 (396)
.+.+.++.|+.+++.+...| .-|.|-+ =+-| ..+|.+ ||-...+.|
T Consensus 139 dn~l~lP~~~~v~~~~tS~D-------ViHsf~v-------p~l~-----------------~k~dav---PG~~~~~~~ 184 (227)
T MTH00154 139 DNRLVLPMNTQIRILITAAD-------VIHSWTV-------PSLG-----------------VKVDAV---PGRLNQLNF 184 (227)
T ss_pred cceEEEecCCEEEEEEEcCc-------hhhheec-------cccC-----------------CeeecC---CCceEEEEE
Confidence 35688999999999999875 3455443 3322 234433 567778889
Q ss_pred EcCCCeeeEEeecch
Q 016030 341 VADNPGAWAFHCHIE 355 (396)
Q Consensus 341 ~adnpG~w~~HCHi~ 355 (396)
.++.||.+..-|--.
T Consensus 185 ~~~~~G~y~g~Cse~ 199 (227)
T MTH00154 185 LINRPGLFFGQCSEI 199 (227)
T ss_pred EEcCceEEEEEeech
Confidence 999999999999855
No 86
>MTH00117 COX2 cytochrome c oxidase subunit II; Provisional
Probab=53.82 E-value=42 Score=30.62 Aligned_cols=72 Identities=14% Similarity=0.280 Sum_probs=49.0
Q ss_pred cceEEeecCCEEEEEEecCCCCCCCCCCCCCeeecCCceEEEeecCCCCCcccccccCCCCCCccceEEeCCCcEEEEEE
Q 016030 261 SGVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRF 340 (396)
Q Consensus 261 ~~~~~~~~g~~v~~vi~N~~~~~~~~~~~HP~HLHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf 340 (396)
.+.+.++.|+.+++.+...|. -| .|+|-+.| ...|.+ ||....+.|
T Consensus 139 ~n~lvlP~~~~v~~~~tS~DV-------iH-------sf~vP~lg-----------------~K~Dav---PG~~n~~~~ 184 (227)
T MTH00117 139 DHRMVIPMESPIRILITAEDV-------LH-------SWAVPSLG-----------------VKTDAV---PGRLNQTSF 184 (227)
T ss_pred cceEEEecCceEEEEEEecch-------hh-------cccccccC-----------------ceeEec---CCceEEEEE
Confidence 356899999999999998763 34 45554432 233333 577778889
Q ss_pred EcCCCeeeEEeecchhhhhc-CcEEEE
Q 016030 341 VADNPGAWAFHCHIEPHFHI-GMGVVL 366 (396)
Q Consensus 341 ~adnpG~w~~HCHi~~H~~~-GM~~~~ 366 (396)
.++.||.+.--|--.=-... -|-+.+
T Consensus 185 ~~~~~G~y~g~CsE~CG~~Hs~M~~~v 211 (227)
T MTH00117 185 ITTRPGVFYGQCSEICGANHSFMPIVV 211 (227)
T ss_pred EEcccceEEEEeccccccCccCCeEEE
Confidence 99999999999986544332 344443
No 87
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=51.93 E-value=74 Score=28.29 Aligned_cols=60 Identities=15% Similarity=0.233 Sum_probs=45.1
Q ss_pred ceEEeecCCEEEEEEecCCCCCCCCCCCCCeeecCCceEEEeecCCCCCcccccccCCCCCCccceEEeCCCcEEEEEEE
Q 016030 262 GVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFV 341 (396)
Q Consensus 262 ~~~~~~~g~~v~~vi~N~~~~~~~~~~~HP~HLHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~ 341 (396)
..+.++.|+.+++.+...| .-|.|.+-.... .+| +-||-...+.|.
T Consensus 116 ~~l~lp~g~~v~~~ltS~D-------ViHsf~vp~l~~------------------------k~d---~~PG~~~~~~~~ 161 (194)
T MTH00047 116 KPLRLVYGVPYHLLVTSSD-------VIHSFSVPDLNL------------------------KMD---AIPGRINHLFFC 161 (194)
T ss_pred ceEEEeCCCEEEeeeecCc-------cccceeccccCc------------------------eee---cCCCceEEEEEE
Confidence 3578999999999999865 457666554432 233 235778889999
Q ss_pred cCCCeeeEEeecch
Q 016030 342 ADNPGAWAFHCHIE 355 (396)
Q Consensus 342 adnpG~w~~HCHi~ 355 (396)
++.||.+..-|.-.
T Consensus 162 ~~~~G~y~g~C~e~ 175 (194)
T MTH00047 162 PDRHGVFVGYCSEL 175 (194)
T ss_pred cCCCEEEEEEeehh
Confidence 99999999999865
No 88
>MTH00098 COX2 cytochrome c oxidase subunit II; Validated
Probab=49.10 E-value=71 Score=29.16 Aligned_cols=72 Identities=15% Similarity=0.283 Sum_probs=49.0
Q ss_pred cceEEeecCCEEEEEEecCCCCCCCCCCCCCeeecCCceEEEeecCCCCCcccccccCCCCCCccceEEeCCCcEEEEEE
Q 016030 261 SGVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRF 340 (396)
Q Consensus 261 ~~~~~~~~g~~v~~vi~N~~~~~~~~~~~HP~HLHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf 340 (396)
.+.+.++.|+.+++.+...|. -| .|+|-+.| ...|. -||....+.|
T Consensus 139 ~n~lvlP~~~~v~~~~tS~DV-------iH-------sf~ip~lg-----------------~k~da---iPG~~~~~~~ 184 (227)
T MTH00098 139 DNRVVLPMEMPIRMLISSEDV-------LH-------SWAVPSLG-----------------LKTDA---IPGRLNQTTL 184 (227)
T ss_pred cceEEecCCCEEEEEEEECcc-------cc-------cccccccc-----------------cceec---CCCceEEEEE
Confidence 356889999999999998763 33 44554432 22333 3577778889
Q ss_pred EcCCCeeeEEeecchhhhhcC-cEEEE
Q 016030 341 VADNPGAWAFHCHIEPHFHIG-MGVVL 366 (396)
Q Consensus 341 ~adnpG~w~~HCHi~~H~~~G-M~~~~ 366 (396)
.++.||.+..-|.-.-..... |-..+
T Consensus 185 ~~~~~G~~~g~Cse~CG~~H~~M~~~v 211 (227)
T MTH00098 185 MSTRPGLYYGQCSEICGSNHSFMPIVL 211 (227)
T ss_pred ecCCcEEEEEECccccCcCcCCceEEE
Confidence 999999999999876544333 44443
No 89
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=49.03 E-value=59 Score=26.01 Aligned_cols=47 Identities=15% Similarity=0.263 Sum_probs=26.9
Q ss_pred eEEEEEEecCcc-ceEEEEEeCc-eeEEEEeCCceeeeeEeceEEecCCceEEEEEee
Q 016030 58 TYRLRIASTTAL-ASLNLAVKNH-KMVVVEADGNYVQPFEVDDMDIYSGESYSVLLTT 113 (396)
Q Consensus 58 ~yRlRlINa~~~-~~~~~sId~h-~l~VIa~DG~~v~P~~v~~l~i~~GqRyDVlv~~ 113 (396)
.|+|+|+|-+.. ..|.|+++|. .+++. . ....+.|.+|+..++-|-.
T Consensus 34 ~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~-------~--~~~~i~v~~g~~~~~~v~v 82 (118)
T PF11614_consen 34 QYTLKLTNKTNQPRTYTISVEGLPGAELQ-------G--PENTITVPPGETREVPVFV 82 (118)
T ss_dssp EEEEEEEE-SSS-EEEEEEEES-SS-EE--------E--S--EEEE-TT-EEEEEEEE
T ss_pred EEEEEEEECCCCCEEEEEEEecCCCeEEE-------C--CCcceEECCCCEEEEEEEE
Confidence 489999999865 4688888874 33331 1 2356777888876655543
No 90
>PRK10525 cytochrome o ubiquinol oxidase subunit II; Provisional
Probab=48.96 E-value=34 Score=32.86 Aligned_cols=59 Identities=15% Similarity=0.180 Sum_probs=42.8
Q ss_pred eEEeecCCEEEEEEecCCCCCCCCCCCCCeeecCCceEEEeecCCCCCcccccccCCCCCCccceEEeCCCcEEEEEEEc
Q 016030 263 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 342 (396)
Q Consensus 263 ~~~~~~g~~v~~vi~N~~~~~~~~~~~HP~HLHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf~a 342 (396)
.+.++.|+.|++.+...|. -| .|+|-+.+ ...|. -||-...+.|.+
T Consensus 152 eL~iP~g~pV~f~lTS~DV-------iH-------SF~IP~Lg-----------------~K~da---mPG~~n~l~~~a 197 (315)
T PRK10525 152 EIAFPANVPVYFKVTSNSV-------MN-------SFFIPRLG-----------------SQIYA---MAGMQTRLHLIA 197 (315)
T ss_pred cEEEecCCEEEEEEEEchh-------hh-------hhhhhhhC-----------------Ceeec---CCCceeEEEEEc
Confidence 4788999999999998763 34 44544432 12333 357777899999
Q ss_pred CCCeeeEEeecch
Q 016030 343 DNPGAWAFHCHIE 355 (396)
Q Consensus 343 dnpG~w~~HCHi~ 355 (396)
|.||.+.-.|--.
T Consensus 198 ~~~G~Y~G~CaEy 210 (315)
T PRK10525 198 NEPGTYDGISASY 210 (315)
T ss_pred CCCEEEEEEChhh
Confidence 9999999999744
No 91
>MTH00051 COX2 cytochrome c oxidase subunit II; Provisional
Probab=48.50 E-value=58 Score=29.88 Aligned_cols=62 Identities=16% Similarity=0.291 Sum_probs=43.8
Q ss_pred cceEEeecCCEEEEEEecCCCCCCCCCCCCCeeecCCceEEEeecCCCCCcccccccCCCCCCccceEEeCCCcEEEEEE
Q 016030 261 SGVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRF 340 (396)
Q Consensus 261 ~~~~~~~~g~~v~~vi~N~~~~~~~~~~~HP~HLHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf 340 (396)
.+.+.++.|+.+++.+.+.| .-|.|.+-.... ..|. -||....+.|
T Consensus 143 dn~lvlP~~~~v~~~itS~D-------ViHsf~vp~lg~------------------------k~da---iPG~~~~~~~ 188 (234)
T MTH00051 143 DNRLIVPIQTQVRVLVTAAD-------VLHSFAVPSLSV------------------------KIDA---VPGRLNQTSF 188 (234)
T ss_pred ceEEEEecCcEEEEEEEeCc-------hhccccccccCc------------------------eeEc---cCCceEeEEE
Confidence 45688999999999999876 345544433222 2232 2466667888
Q ss_pred EcCCCeeeEEeecchh
Q 016030 341 VADNPGAWAFHCHIEP 356 (396)
Q Consensus 341 ~adnpG~w~~HCHi~~ 356 (396)
.++.||.+..-|.-.=
T Consensus 189 ~~~~~G~y~g~Cse~C 204 (234)
T MTH00051 189 FIKRPGVFYGQCSEIC 204 (234)
T ss_pred EeCCCEEEEEEChhhc
Confidence 9999999999998643
No 92
>MTH00168 COX2 cytochrome c oxidase subunit II; Provisional
Probab=48.21 E-value=57 Score=29.73 Aligned_cols=61 Identities=20% Similarity=0.439 Sum_probs=44.2
Q ss_pred cceEEeecCCEEEEEEecCCCCCCCCCCCCCeeecCCceEEEeecCCCCCcccccccCCCCCCccceEEeCCCcEEEEEE
Q 016030 261 SGVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRF 340 (396)
Q Consensus 261 ~~~~~~~~g~~v~~vi~N~~~~~~~~~~~HP~HLHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf 340 (396)
.+.+.++.|+.+++.++..| .-|.| +|=+.| .+.|.+ ||-...+.|
T Consensus 139 ~n~l~lP~~~~v~~~~tS~D-------ViHsf-------~vP~lg-----------------~k~dai---PG~~n~~~~ 184 (225)
T MTH00168 139 DNRLVLPMDSKIRVLVTSAD-------VLHSW-------TLPSLG-----------------LKMDAV---PGRLNQLAF 184 (225)
T ss_pred cceEEEecCCEEEEEEEeCC-------hhhcc-------cccccc-----------------ccccCC---CCeEEEEEE
Confidence 45688999999999999875 34544 433332 234433 566778889
Q ss_pred EcCCCeeeEEeecch
Q 016030 341 VADNPGAWAFHCHIE 355 (396)
Q Consensus 341 ~adnpG~w~~HCHi~ 355 (396)
.++.||.+..-|.-.
T Consensus 185 ~~~~~G~~~g~CsE~ 199 (225)
T MTH00168 185 LSSRPGSFYGQCSEI 199 (225)
T ss_pred EcCCCEEEEEEcccc
Confidence 999999999999865
No 93
>MTH00080 COX2 cytochrome c oxidase subunit II; Provisional
Probab=48.02 E-value=60 Score=29.75 Aligned_cols=61 Identities=16% Similarity=0.253 Sum_probs=43.6
Q ss_pred cceEEeecCCEEEEEEecCCCCCCCCCCCCCeeecCCceEEEeecCCCCCcccccccCCCCCCccceEEeCCCcEEEEEE
Q 016030 261 SGVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRF 340 (396)
Q Consensus 261 ~~~~~~~~g~~v~~vi~N~~~~~~~~~~~HP~HLHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf 340 (396)
.+.+.++.|+.+++.+...| .-|.|.+- +-| ...|.+ ||-...+.|
T Consensus 142 dn~l~lP~~~~v~~~itS~D-------ViHSf~vP-------~lg-----------------~K~Dav---PGr~n~~~~ 187 (231)
T MTH00080 142 DNRCVLPCDTNIRFCITSSD-------VIHSWALP-------SLS-----------------IKMDAM---SGILSTLCY 187 (231)
T ss_pred eCceEeecCcEEEEEEEeCc-------cccccccc-------ccC-----------------ceeecc---CCceEEEEE
Confidence 35678999999999999876 34555443 322 234433 466677888
Q ss_pred EcCCCeeeEEeecch
Q 016030 341 VADNPGAWAFHCHIE 355 (396)
Q Consensus 341 ~adnpG~w~~HCHi~ 355 (396)
.++.||.+.--|--.
T Consensus 188 ~~~~~G~y~g~CsE~ 202 (231)
T MTH00080 188 SFPMPGVFYGQCSEI 202 (231)
T ss_pred EEcCceEEEEEehhh
Confidence 999999999999754
No 94
>MTH00185 COX2 cytochrome c oxidase subunit II; Provisional
Probab=47.07 E-value=88 Score=28.61 Aligned_cols=72 Identities=15% Similarity=0.279 Sum_probs=48.2
Q ss_pred cceEEeecCCEEEEEEecCCCCCCCCCCCCCeeecCCceEEEeecCCCCCcccccccCCCCCCccceEEeCCCcEEEEEE
Q 016030 261 SGVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRF 340 (396)
Q Consensus 261 ~~~~~~~~g~~v~~vi~N~~~~~~~~~~~HP~HLHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf 340 (396)
.+.+.++.|+.+++.+...| .-|- |+|-+.| ...|. -||....+.|
T Consensus 139 ~n~lvlP~~~~v~~~~tS~D-------ViHs-------f~iP~lg-----------------~k~da---iPG~~~~~~~ 184 (230)
T MTH00185 139 DHRMVVPMESPIRVLITAED-------VLHS-------WTVPALG-----------------VKMDA---VPGRLNQATF 184 (230)
T ss_pred CCeEEEecCCEEEEEEEcCc-------cccc-------ccccccC-----------------ceeEe---cCCceEEEEE
Confidence 35688999999999999876 3444 4444432 12332 2566777888
Q ss_pred EcCCCeeeEEeecchhhhhcC-cEEEE
Q 016030 341 VADNPGAWAFHCHIEPHFHIG-MGVVL 366 (396)
Q Consensus 341 ~adnpG~w~~HCHi~~H~~~G-M~~~~ 366 (396)
.++.||.+..-|.-.=..... |-..+
T Consensus 185 ~~~~~G~~~g~Cse~CG~~Hs~M~~~v 211 (230)
T MTH00185 185 IISRPGLYYGQCSEICGANHSFMPIVV 211 (230)
T ss_pred EeCCcEEEEEEchhhcCcCcCCCeEEE
Confidence 999999999999876444333 43333
No 95
>MTH00027 COX2 cytochrome c oxidase subunit II; Provisional
Probab=45.58 E-value=68 Score=29.99 Aligned_cols=72 Identities=21% Similarity=0.287 Sum_probs=48.1
Q ss_pred cceEEeecCCEEEEEEecCCCCCCCCCCCCCeeecCCceEEEeecCCCCCcccccccCCCCCCccceEEeCCCcEEEEEE
Q 016030 261 SGVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRF 340 (396)
Q Consensus 261 ~~~~~~~~g~~v~~vi~N~~~~~~~~~~~HP~HLHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf 340 (396)
.+.+.++.|+.+++.+...|. -|. |+|=+.| ..+|.+ ||-.-.+.|
T Consensus 173 dn~lvlP~~~~v~~~ltS~DV-------iHS-------f~vP~lg-----------------vK~Dai---PGr~n~~~~ 218 (262)
T MTH00027 173 DNRLILPVDTNVRVLITAADV-------LHS-------WTVPSLA-----------------VKMDAV---PGRINETGF 218 (262)
T ss_pred eceEEEeeCcEEEEEEEcCcc-------ccc-------eeccccc-----------------CcccCC---CCceeeEEE
Confidence 356889999999999998763 444 4544432 234443 455667889
Q ss_pred EcCCCeeeEEeecchhhh-hcCcEEEE
Q 016030 341 VADNPGAWAFHCHIEPHF-HIGMGVVL 366 (396)
Q Consensus 341 ~adnpG~w~~HCHi~~H~-~~GM~~~~ 366 (396)
.++.||.+.-.|+-.-=. ...|-+.+
T Consensus 219 ~~~~~G~y~g~CsE~CG~~Hs~Mpi~v 245 (262)
T MTH00027 219 LIKRPGIFYGQCSEICGANHSFMPIVV 245 (262)
T ss_pred EcCCcEEEEEEcchhcCcCcCCCeEEE
Confidence 999999999999855322 23454444
No 96
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=44.30 E-value=1.7e+02 Score=23.65 Aligned_cols=57 Identities=18% Similarity=0.344 Sum_probs=40.7
Q ss_pred eEEEEcCCCeEEEEEEecCccceEEEEEeCceeEEEEeCCceeeeeEeceEEecCCceEEEEEeeCCCCCcceEEEE
Q 016030 49 QILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISA 125 (396)
Q Consensus 49 ~~~~v~~G~~yRlRlINa~~~~~~~~sId~h~l~VIa~DG~~v~P~~v~~l~i~~GqRyDVlv~~~~~~~~~y~ir~ 125 (396)
..+.++.|+++||+|-+.... .-|+|++..+++ .+-||+.-.+-+.+++ +| .|+++-
T Consensus 46 ~~l~lp~g~~v~~~ltS~DVi--Hsf~ip~~~~k~----------------d~~PG~~~~~~~~~~~-~G-~y~~~C 102 (120)
T PF00116_consen 46 NELVLPAGQPVRFHLTSEDVI--HSFWIPELGIKM----------------DAIPGRTNSVTFTPDK-PG-TYYGQC 102 (120)
T ss_dssp SEEEEETTSEEEEEEEESSS---EEEEETTCTEEE----------------EEBTTCEEEEEEEESS-SE-EEEEEE
T ss_pred ceecccccceEeEEEEcCCcc--ccccccccCccc----------------ccccccceeeeeeecc-CC-cEEEcC
Confidence 579999999999999986654 455667665443 3457777777788766 43 888874
No 97
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=44.25 E-value=60 Score=29.64 Aligned_cols=21 Identities=19% Similarity=0.518 Sum_probs=18.5
Q ss_pred CceEEEEcCCCeEEEEEEecC
Q 016030 47 APQILHVQPNKTYRLRIASTT 67 (396)
Q Consensus 47 ~~~~~~v~~G~~yRlRlINa~ 67 (396)
.|+.++++||++..+|++..+
T Consensus 74 tPPl~rl~pg~~q~vRii~~~ 94 (230)
T PRK09918 74 TPPVARVEPGQSQQVRFILKS 94 (230)
T ss_pred cCCeEEECCCCceEEEEEECC
Confidence 578899999999999999765
No 98
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=43.31 E-value=1.5e+02 Score=22.69 Aligned_cols=65 Identities=20% Similarity=0.204 Sum_probs=37.4
Q ss_pred EEcCCCeE--EEEEEecCccc-eEEEEEeCceeEEEEeCCceeeeeEeceEEecCCceEEEEEeeC-CCCCcceEEE
Q 016030 52 HVQPNKTY--RLRIASTTALA-SLNLAVKNHKMVVVEADGNYVQPFEVDDMDIYSGESYSVLLTTN-QDPSYNYWIS 124 (396)
Q Consensus 52 ~v~~G~~y--RlRlINa~~~~-~~~~sId~h~l~VIa~DG~~v~P~~v~~l~i~~GqRyDVlv~~~-~~~~~~y~ir 124 (396)
++..|++| .+.|.|.|... .|++......- +.--++| ..-.|.||+..++-|.+. ...-+.|.-.
T Consensus 15 ~v~~g~~~~~~v~l~N~s~~p~~f~v~~~~~~~-----~~~~v~~---~~g~l~PG~~~~~~V~~~~~~~~g~~~~~ 83 (102)
T PF14874_consen 15 NVFVGQTYSRTVTLTNTSSIPARFRVRQPESLS-----SFFSVEP---PSGFLAPGESVELEVTFSPTKPLGDYEGS 83 (102)
T ss_pred EEccCCEEEEEEEEEECCCCCEEEEEEeCCcCC-----CCEEEEC---CCCEECCCCEEEEEEEEEeCCCCceEEEE
Confidence 37788887 58899998753 34444433110 0001122 233589999988888887 4333355443
No 99
>MTH00008 COX2 cytochrome c oxidase subunit II; Validated
Probab=43.23 E-value=1e+02 Score=28.13 Aligned_cols=72 Identities=21% Similarity=0.319 Sum_probs=48.9
Q ss_pred cceEEeecCCEEEEEEecCCCCCCCCCCCCCeeecCCceEEEeecCCCCCcccccccCCCCCCccceEEeCCCcEEEEEE
Q 016030 261 SGVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRF 340 (396)
Q Consensus 261 ~~~~~~~~g~~v~~vi~N~~~~~~~~~~~HP~HLHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf 340 (396)
.+.+.++.|+.+++.+++.| .-|.|.+-+...+ .| .-||....+-|
T Consensus 139 dn~lvlP~~~~v~~~~tS~D-------ViHsf~vP~~~~k------------------------~d---aiPG~~~~~~~ 184 (228)
T MTH00008 139 DNRAVLPMQTEIRVLVTAAD-------VIHSWTVPSLGVK------------------------VD---AVPGRLNQIGF 184 (228)
T ss_pred CceEEEecCCEEEEEEEeCC-------ccccccccccCcc------------------------ee---cCCCceEEEEE
Confidence 35688999999999999976 3555544443322 22 23567777888
Q ss_pred EcCCCeeeEEeecchhhhh-cCcEEEE
Q 016030 341 VADNPGAWAFHCHIEPHFH-IGMGVVL 366 (396)
Q Consensus 341 ~adnpG~w~~HCHi~~H~~-~GM~~~~ 366 (396)
.++.||.+..-|.-.=... .-|-..+
T Consensus 185 ~~~~~G~~~g~Cse~CG~~Hs~M~~~v 211 (228)
T MTH00008 185 TITRPGVFYGQCSEICGANHSFMPIVL 211 (228)
T ss_pred EeCCCEEEEEEChhhcCcCccCceeEE
Confidence 9999999999998665443 3344443
No 100
>MTH00076 COX2 cytochrome c oxidase subunit II; Provisional
Probab=42.24 E-value=81 Score=28.78 Aligned_cols=72 Identities=15% Similarity=0.274 Sum_probs=47.7
Q ss_pred cceEEeecCCEEEEEEecCCCCCCCCCCCCCeeecCCceEEEeecCCCCCcccccccCCCCCCccceEEeCCCcEEEEEE
Q 016030 261 SGVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRF 340 (396)
Q Consensus 261 ~~~~~~~~g~~v~~vi~N~~~~~~~~~~~HP~HLHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~~~irf 340 (396)
.+.+.++.|+.+++.+...| .-|. |+|-+.| ...|.+ ||....+.|
T Consensus 139 ~n~l~lP~~~~v~~~~tS~D-------ViHs-------f~vP~lg-----------------~k~da~---PG~~n~~~~ 184 (228)
T MTH00076 139 DNRMVVPMESPIRMLITAED-------VLHS-------WAVPSLG-----------------IKTDAI---PGRLNQTSF 184 (228)
T ss_pred CceEEEecCCEEEEEEEecc-------cccc-------ccccccC-----------------ceEEcc---CCcceeEEE
Confidence 35688999999999999875 3444 4443332 123322 466677888
Q ss_pred EcCCCeeeEEeecchhhhh-cCcEEEE
Q 016030 341 VADNPGAWAFHCHIEPHFH-IGMGVVL 366 (396)
Q Consensus 341 ~adnpG~w~~HCHi~~H~~-~GM~~~~ 366 (396)
.++.||.+..-|.-.-... ..|-..+
T Consensus 185 ~~~~~G~~~g~C~e~CG~~Hs~M~~~v 211 (228)
T MTH00076 185 IASRPGVYYGQCSEICGANHSFMPIVV 211 (228)
T ss_pred EeCCcEEEEEEChhhcCccccCCceEE
Confidence 9999999999998754432 3344443
No 101
>PRK15195 fimbrial chaperone protein FimC; Provisional
Probab=39.52 E-value=48 Score=30.31 Aligned_cols=34 Identities=21% Similarity=0.288 Sum_probs=24.8
Q ss_pred CceEEEEcCCCeEEEEEEecCcc------ceEEEEEeCce
Q 016030 47 APQILHVQPNKTYRLRIASTTAL------ASLNLAVKNHK 80 (396)
Q Consensus 47 ~~~~~~v~~G~~yRlRlINa~~~------~~~~~sId~h~ 80 (396)
.|+.|+++||++..+|++..+.. ..|+|.|.+.+
T Consensus 76 tPPlfrl~p~~~q~lRIi~~~~~LP~DrESlf~Lnv~eIP 115 (229)
T PRK15195 76 TPPLFVSEPKSENTLRIIYAGPPLAADRESLFWMNVKAIP 115 (229)
T ss_pred cCCeEEECCCCceEEEEEECCCCCCCCeeEEEEEEeeecC
Confidence 57889999999999999987642 23555555443
No 102
>COG3354 FlaG Putative archaeal flagellar protein G [Cell motility and secretion]
Probab=37.82 E-value=1.3e+02 Score=25.25 Aligned_cols=64 Identities=25% Similarity=0.323 Sum_probs=43.6
Q ss_pred CeEEEEEEecCccceEEEEEeCceeEEEEeCCceeeeeEe-------ceEEecCCceE-EEEEeeCCCCCcceEEEEE
Q 016030 57 KTYRLRIASTTALASLNLAVKNHKMVVVEADGNYVQPFEV-------DDMDIYSGESY-SVLLTTNQDPSYNYWISAG 126 (396)
Q Consensus 57 ~~yRlRlINa~~~~~~~~sId~h~l~VIa~DG~~v~P~~v-------~~l~i~~GqRy-DVlv~~~~~~~~~y~ir~~ 126 (396)
.+|-|-+=|.|.. .+.+++-.++|+ +||+.+.|-.+ +.+.|.|||-- .|.|.-... | .-.|...
T Consensus 70 ~t~t~yiKNtG~~---~~~fd~~sitVl-iDG~iv~~a~~~~~~~~gs~i~l~PG~Vg~ev~vn~~lS-G-yhri~V~ 141 (154)
T COG3354 70 YTYTFYIKNTGSD---SIAFDNTSITVL-IDGNIVTPAYVTFTSVNGSSIRLSPGQVGREVTVNEALS-G-YHRIVVS 141 (154)
T ss_pred eEEEEEEecCCCc---ccccCCCeEEEE-EcCcEeccceEEEEecCCCeeEecCCceeeEEEeccCCC-c-ceEEEEE
Confidence 3577888888875 457788888887 89998876433 45779999976 666654433 2 4445443
No 103
>PF03459 TOBE: TOBE domain; InterPro: IPR005116 The TOBE domain [] (Transport-associated OB) always occurs as a dimer as the C-terminal strand of each domain is supplied by the partner. It is probably involved in the recognition of small ligands such as molybdenum (P46930 from SWISSPROT) and sulphate (P16676 from SWISSPROT), and is found in ABC transporters immediately after the ATPase domain.; GO: 0005215 transporter activity, 0005524 ATP binding, 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0006810 transport, 0043190 ATP-binding cassette (ABC) transporter complex; PDB: 1G29_2 1H9M_B 1H9J_A 1H9K_A 1H9R_B 1O7L_C 1H9S_A 1B9N_A 1B9M_A 1GUS_C ....
Probab=37.06 E-value=31 Score=24.09 Aligned_cols=49 Identities=8% Similarity=0.217 Sum_probs=31.6
Q ss_pred EEEEecCccceEEEEEeCceeEEEEeCCceeeeeEeceEEecCCceEEEEEeeC
Q 016030 61 LRIASTTALASLNLAVKNHKMVVVEADGNYVQPFEVDDMDIYSGESYSVLLTTN 114 (396)
Q Consensus 61 lRlINa~~~~~~~~sId~h~l~VIa~DG~~v~P~~v~~l~i~~GqRyDVlv~~~ 114 (396)
.++.+.+....+.+.++++. .+.|. +.+.....+.|.+|++.-+.+++.
T Consensus 12 ~~ie~~g~~~~v~~~~~~~~-~l~a~----it~~~~~~L~L~~G~~V~~~ik~~ 60 (64)
T PF03459_consen 12 ESIENLGSEVEVTLDLGGGE-TLTAR----ITPESAEELGLKPGDEVYASIKAS 60 (64)
T ss_dssp EEEEESSSEEEEEEEETTSE-EEEEE----EEHHHHHHCT-STT-EEEEEE-GG
T ss_pred EEEEECCCeEEEEEEECCCC-EEEEE----EcHHHHHHcCCCCCCEEEEEEehh
Confidence 35566677777777777776 33333 445556778899999999998864
No 104
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=35.63 E-value=1.7e+02 Score=21.25 Aligned_cols=66 Identities=24% Similarity=0.365 Sum_probs=30.2
Q ss_pred EcCCCe--EEEEEEecCccc--eEEEEEeCceeEEEEeCCce--eeeeEeceEEecCCceEEE--EEeeCCC-CCcceEE
Q 016030 53 VQPNKT--YRLRIASTTALA--SLNLAVKNHKMVVVEADGNY--VQPFEVDDMDIYSGESYSV--LLTTNQD-PSYNYWI 123 (396)
Q Consensus 53 v~~G~~--yRlRlINa~~~~--~~~~sId~h~l~VIa~DG~~--v~P~~v~~l~i~~GqRyDV--lv~~~~~-~~~~y~i 123 (396)
|++|+. +++.+-|.+... .+.++++. =+|=. ..|..+. .|.+||...+ -|+...+ ..|+|.|
T Consensus 1 v~~G~~~~~~~tv~N~g~~~~~~v~~~l~~-------P~GW~~~~~~~~~~--~l~pG~s~~~~~~V~vp~~a~~G~y~v 71 (78)
T PF10633_consen 1 VTPGETVTVTLTVTNTGTAPLTNVSLSLSL-------PEGWTVSASPASVP--SLPPGESVTVTFTVTVPADAAPGTYTV 71 (78)
T ss_dssp --TTEEEEEEEEEE--SSS-BSS-EEEEE---------TTSE---EEEEE----B-TTSEEEEEEEEEE-TT--SEEEEE
T ss_pred CCCCCEEEEEEEEEECCCCceeeEEEEEeC-------CCCccccCCccccc--cCCCCCEEEEEEEEECCCCCCCceEEE
Confidence 456765 467788987543 34444432 33333 2444444 7899976544 4444443 2358998
Q ss_pred EEEe
Q 016030 124 SAGV 127 (396)
Q Consensus 124 r~~~ 127 (396)
.+..
T Consensus 72 ~~~a 75 (78)
T PF10633_consen 72 TVTA 75 (78)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8654
No 105
>PF14392 zf-CCHC_4: Zinc knuckle
Probab=34.96 E-value=55 Score=21.84 Aligned_cols=41 Identities=15% Similarity=0.116 Sum_probs=30.0
Q ss_pred CCCCccceEE-eCCCcEEEEEEEcCCCeeeEEeecchhhhhc
Q 016030 320 KNPPLKNTAV-IFPYGWTALRFVADNPGAWAFHCHIEPHFHI 360 (396)
Q Consensus 320 ~~p~~rDTv~-vp~~g~~~irf~adnpG~w~~HCHi~~H~~~ 360 (396)
..|..+-+.. .+.|..+.++++-..-..+=+||...-|...
T Consensus 4 ~kPL~~~i~v~~~~g~~~~~~v~YE~lp~~C~~C~~~gH~~~ 45 (49)
T PF14392_consen 4 SKPLRREIKVKFPEGESFWVKVKYERLPRFCFHCGRIGHSDK 45 (49)
T ss_pred CCcccceEEEEeCCCcEEEEEEEECCcChhhcCCCCcCcCHh
Confidence 3454444333 3557788888998889999999999999753
No 106
>PRK15249 fimbrial chaperone protein StbB; Provisional
Probab=34.47 E-value=58 Score=30.23 Aligned_cols=22 Identities=18% Similarity=0.472 Sum_probs=19.2
Q ss_pred CCceEEEEcCCCeEEEEEEecC
Q 016030 46 CAPQILHVQPNKTYRLRIASTT 67 (396)
Q Consensus 46 ~~~~~~~v~~G~~yRlRlINa~ 67 (396)
..|+.|+++||++..+||+..+
T Consensus 83 vtPPlfrl~p~~~q~lRI~~~~ 104 (253)
T PRK15249 83 ATPPVFRIQPKAGQVVRVIYNN 104 (253)
T ss_pred EcCCeEEecCCCceEEEEEEcC
Confidence 3578899999999999999875
No 107
>KOG4078 consensus Putative mitochondrial ribosomal protein mRpS35 [Translation, ribosomal structure and biogenesis]
Probab=34.21 E-value=26 Score=29.11 Aligned_cols=37 Identities=22% Similarity=0.302 Sum_probs=28.0
Q ss_pred EcCCCeEEEEEEecCccceEEEEEeCceeEEEEeCCcee
Q 016030 53 VQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGNYV 91 (396)
Q Consensus 53 v~~G~~yRlRlINa~~~~~~~~sId~h~l~VIa~DG~~v 91 (396)
.+.|.|+|||||.---.. +|-=..|++||.++|.+.+
T Consensus 120 Y~~GaRVrlRl~DlELs~--rFLGs~~D~T~LEAdavLl 156 (173)
T KOG4078|consen 120 YQKGARVRLRLIDLELSE--RFLGSKHDLTLLEADAVLL 156 (173)
T ss_pred hhcCceEEEEEcChhHhh--hhhcCCccceEEecceeee
Confidence 578999999999765332 2223468999999999987
No 108
>PF10636 hemP: Hemin uptake protein hemP; InterPro: IPR019600 This entry represents bacterial proteins that are involved in the uptake of the iron source hemin []. ; PDB: 2JRA_B 2LOJ_A.
Probab=34.10 E-value=28 Score=22.15 Aligned_cols=19 Identities=26% Similarity=0.420 Sum_probs=14.1
Q ss_pred eEEEEcCCCeEEEEEEecC
Q 016030 49 QILHVQPNKTYRLRIASTT 67 (396)
Q Consensus 49 ~~~~v~~G~~yRlRlINa~ 67 (396)
...-.-.|+.||||+-.++
T Consensus 14 ev~I~H~g~~Y~LR~Tr~g 32 (38)
T PF10636_consen 14 EVRIEHGGQIYRLRITRQG 32 (38)
T ss_dssp EEEEEETTEEEEEEEETTT
T ss_pred EEEEEeCCeEEEeeEccCC
Confidence 3445668899999987655
No 109
>PRK09926 putative chaperone protein EcpD; Provisional
Probab=34.05 E-value=56 Score=30.21 Aligned_cols=23 Identities=13% Similarity=0.466 Sum_probs=19.9
Q ss_pred CCceEEEEcCCCeEEEEEEecCc
Q 016030 46 CAPQILHVQPNKTYRLRIASTTA 68 (396)
Q Consensus 46 ~~~~~~~v~~G~~yRlRlINa~~ 68 (396)
..|+.++++||++..|||+..+.
T Consensus 79 vtPPl~rl~p~~~q~lRIi~~~~ 101 (246)
T PRK09926 79 ATPPVSRIDPKRGQTIKLMYTAS 101 (246)
T ss_pred EcCCeEEECCCCccEEEEEeCCC
Confidence 35788999999999999998875
No 110
>PF04225 OapA: Opacity-associated protein A LysM-like domain; InterPro: IPR007340 This entry includes the Haemophilus influenzae opacity-associated protein. This protein is required for efficient nasopharyngeal mucosal colonization, and its expression is associated with a distinctive transparent colony phenotype. OapA is thought to be a secreted protein, and its expression exhibits high-frequency phase variation [].; PDB: 2GU1_A.
Probab=33.47 E-value=92 Score=23.58 Aligned_cols=40 Identities=15% Similarity=0.404 Sum_probs=25.6
Q ss_pred EEcCCCeEEEEEEecCccceEEEEEeCceeEEE-EeCCcee
Q 016030 52 HVQPNKTYRLRIASTTALASLNLAVKNHKMVVV-EADGNYV 91 (396)
Q Consensus 52 ~v~~G~~yRlRlINa~~~~~~~~sId~h~l~VI-a~DG~~v 91 (396)
.++||++.+|.+=..|....+++..+..+..++ ..||.+.
T Consensus 42 ~L~pGq~l~f~~d~~g~L~~L~~~~~~~~~~~~R~~DG~f~ 82 (85)
T PF04225_consen 42 RLKPGQTLEFQLDEDGQLTALRYERSPKTTLYTRQSDGSFS 82 (85)
T ss_dssp G--TT-EEEEEE-TTS-EEEEEEEEETTEEEEEE-TTS-EE
T ss_pred hCCCCCEEEEEECCCCCEEEEEEEcCCcEEEEEEeCCCCEE
Confidence 479999999998877888888888887654443 4688875
No 111
>PRK15299 fimbrial chaperone protein StiB; Provisional
Probab=33.13 E-value=62 Score=29.47 Aligned_cols=22 Identities=23% Similarity=0.403 Sum_probs=19.5
Q ss_pred CceEEEEcCCCeEEEEEEecCc
Q 016030 47 APQILHVQPNKTYRLRIASTTA 68 (396)
Q Consensus 47 ~~~~~~v~~G~~yRlRlINa~~ 68 (396)
.|+.+++++|++..+|++..+.
T Consensus 75 tPPl~rl~p~~~q~lRI~~~~~ 96 (227)
T PRK15299 75 TPPLFRLNGGQKNVLRIIRTGG 96 (227)
T ss_pred cCCeEEECCCCccEEEEEECCC
Confidence 5788999999999999998864
No 112
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=32.88 E-value=78 Score=25.59 Aligned_cols=20 Identities=15% Similarity=0.306 Sum_probs=16.4
Q ss_pred CceEEEEcCCCeEEEEEEec
Q 016030 47 APQILHVQPNKTYRLRIAST 66 (396)
Q Consensus 47 ~~~~~~v~~G~~yRlRlINa 66 (396)
.|..++|++|.+++|...+.
T Consensus 13 ~P~~v~V~~GdTV~f~n~d~ 32 (116)
T TIGR02375 13 EPAYIRAAPGDTVTFVPTDK 32 (116)
T ss_pred eCCEEEECCCCEEEEEECCC
Confidence 46789999999988877764
No 113
>PF14734 DUF4469: Domain of unknown function (DUF4469) with IG-like fold
Probab=31.83 E-value=1.4e+02 Score=23.51 Aligned_cols=47 Identities=9% Similarity=0.124 Sum_probs=32.2
Q ss_pred eEEEEeCCceeeeeEeceEEecCCceEEEEEeeCCCCCcceEEEEEec
Q 016030 81 MVVVEADGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAGVR 128 (396)
Q Consensus 81 l~VIa~DG~~v~P~~v~~l~i~~GqRyDVlv~~~~~~~~~y~ir~~~~ 128 (396)
+.++..|.+...++..+.+...---|..++|-++-.+| .|+|.+...
T Consensus 40 v~l~~~~~g~~~~v~~~~i~~N~ps~l~~~lPa~L~~G-~Y~l~V~Tq 86 (102)
T PF14734_consen 40 VFLVSDDEGTETKVPCSSIVRNKPSRLIFILPADLAAG-EYTLEVRTQ 86 (102)
T ss_pred EEEEcCCCCceEEecHHHeEeCCCcEEEEECcCccCce-EEEEEEEEE
Confidence 33333344444566667788888999999998766665 899976544
No 114
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=31.57 E-value=54 Score=27.59 Aligned_cols=26 Identities=19% Similarity=0.324 Sum_probs=20.8
Q ss_pred eCCCcEEEEEEE-cCCC---eeeEEeecch
Q 016030 330 IFPYGWTALRFV-ADNP---GAWAFHCHIE 355 (396)
Q Consensus 330 vp~~g~~~irf~-adnp---G~w~~HCHi~ 355 (396)
|+||..+.|.++ ..|| |.|+|+|-..
T Consensus 99 V~pG~tv~V~l~~v~NP~~~G~Y~f~v~a~ 128 (146)
T PF10989_consen 99 VPPGTTVTVVLSPVRNPRSGGTYQFNVTAF 128 (146)
T ss_pred CCCCCEEEEEEEeeeCCCCCCeEEEEEEEE
Confidence 788999999996 4566 9999998643
No 115
>PF07233 DUF1425: Protein of unknown function (DUF1425); InterPro: IPR010824 This family consists of several hypothetical bacterial proteins of around 125 residues in length. Several members of this family are described as putative lipoproteins and are often known as YcfL. The function of this family is unknown.; PDB: 3O0L_A.
Probab=31.27 E-value=1.6e+02 Score=22.69 Aligned_cols=46 Identities=9% Similarity=0.184 Sum_probs=28.1
Q ss_pred eeEEEEeCCceeeee--EeceEEecCCceEEEEEeeCCCCCcceEEEE
Q 016030 80 KMVVVEADGNYVQPF--EVDDMDIYSGESYSVLLTTNQDPSYNYWISA 125 (396)
Q Consensus 80 ~l~VIa~DG~~v~P~--~v~~l~i~~GqRyDVlv~~~~~~~~~y~ir~ 125 (396)
+|.-+..||..+.|. .-..+.|.++|+..|-..+......+|.|..
T Consensus 45 rf~WyD~~G~~v~~~~~~w~~~~l~~~~~~~l~~~ap~~~A~~~Rlyl 92 (94)
T PF07233_consen 45 RFYWYDKQGLEVDPEQSPWQSLTLPGGQTVTLSAVAPNPEAKDFRLYL 92 (94)
T ss_dssp EEEEE-TTS-EE--TT---EEEEE-TT-EEEEEEE-SSTT--EEEEEE
T ss_pred EEEEECCCCCCcCCCCCCCEEEEEcCCCEEEEEEECCCCCeEEEEEEE
Confidence 477788888888765 4478999999999999988776545777654
No 116
>PRK11385 putativi pili assembly chaperone; Provisional
Probab=30.11 E-value=97 Score=28.46 Aligned_cols=21 Identities=33% Similarity=0.567 Sum_probs=18.9
Q ss_pred CceEEEEcCCCeEEEEEEecC
Q 016030 47 APQILHVQPNKTYRLRIASTT 67 (396)
Q Consensus 47 ~~~~~~v~~G~~yRlRlINa~ 67 (396)
.|+.|+++||++..||++..+
T Consensus 83 tPPlfrl~p~~~q~lRIi~~~ 103 (236)
T PRK11385 83 APPLILLKPGTTGTLRLLRTE 103 (236)
T ss_pred cCCeEEECCCCceEEEEEECC
Confidence 578899999999999999886
No 117
>PRK15208 long polar fimbrial chaperone LpfB; Provisional
Probab=29.15 E-value=78 Score=28.86 Aligned_cols=22 Identities=32% Similarity=0.604 Sum_probs=19.2
Q ss_pred CceEEEEcCCCeEEEEEEecCc
Q 016030 47 APQILHVQPNKTYRLRIASTTA 68 (396)
Q Consensus 47 ~~~~~~v~~G~~yRlRlINa~~ 68 (396)
.|+.++++||++..+|++..+.
T Consensus 72 tPPl~rl~p~~~q~lRIi~~~~ 93 (228)
T PRK15208 72 TPPLFKLDPTKNNVLRIVNITN 93 (228)
T ss_pred CCCeEEECCCCccEEEEEECCC
Confidence 5678999999999999998764
No 118
>PF05938 Self-incomp_S1: Plant self-incompatibility protein S1; InterPro: IPR010264 This family consists of a series of plant proteins which are related to the Papaver rhoeas S1 self-incompatibility protein. Self-incompatibility (SI) is the single most important outbreeding device found in angiosperms and is a mechanism that regulates the acceptance or rejection of pollen. S1 is known to exhibit specific pollen-inhibitory properties [].
Probab=28.91 E-value=1.1e+02 Score=24.14 Aligned_cols=30 Identities=23% Similarity=0.241 Sum_probs=26.5
Q ss_pred eEEeCCCcEEEEEEEcCCCeeeEEeecchh
Q 016030 327 TAVIFPYGWTALRFVADNPGAWAFHCHIEP 356 (396)
Q Consensus 327 Tv~vp~~g~~~irf~adnpG~w~~HCHi~~ 356 (396)
...|.+|+...+.|+.+-.|.-+|.|++.|
T Consensus 28 ~~~l~~g~~~~~~F~~~~~~~t~f~C~~~~ 57 (110)
T PF05938_consen 28 WHVLKPGQSYSFSFRDNFFGTTLFWCHFRW 57 (110)
T ss_pred CEECCCCCEEEEEEecCcCCceeEEEEEEE
Confidence 345788999999999888899999999998
No 119
>PF15415 DUF4622: Protein of unknown function (DUF4622)
Probab=28.38 E-value=1.4e+02 Score=27.33 Aligned_cols=41 Identities=20% Similarity=0.341 Sum_probs=29.7
Q ss_pred EEEcCCCeEEEEEEecCcc--ceEEEEEeCceeEEEEeCCceeee
Q 016030 51 LHVQPNKTYRLRIASTTAL--ASLNLAVKNHKMVVVEADGNYVQP 93 (396)
Q Consensus 51 ~~v~~G~~yRlRlINa~~~--~~~~~sId~h~l~VIa~DG~~v~P 93 (396)
+-+++|. |.||+|..+-. .-...-|++ -+.++|+|+.+.+.
T Consensus 96 Lyl~aGt-Y~F~~iSPAka~~~dgk~~I~N-GeYl~aTd~rytqT 138 (310)
T PF15415_consen 96 LYLNAGT-YYFRMISPAKASNSDGKMNIDN-GEYLYATDNRYTQT 138 (310)
T ss_pred eEEecce-EEEEEeccccccccCceEEeCC-ceEEEEcCCceeEE
Confidence 5688976 99999987633 234455554 47999999999853
No 120
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=28.36 E-value=46 Score=20.90 Aligned_cols=18 Identities=17% Similarity=0.279 Sum_probs=12.1
Q ss_pred CCCCCCceEEEccCCCCCC
Q 016030 6 ASPQGHYVGLVSHRGQFNC 24 (396)
Q Consensus 6 ~~~~~~~s~LiNG~g~~~c 24 (396)
+.|.....+.|||+-+ +|
T Consensus 18 a~~~~pG~ViING~C~-dC 35 (36)
T PF08194_consen 18 AVPATPGNVIINGKCI-DC 35 (36)
T ss_pred cccCCCCeEEECceee-eC
Confidence 3444445889999877 45
No 121
>PRK15295 fimbrial assembly chaperone SthB; Provisional
Probab=27.80 E-value=1.1e+02 Score=27.97 Aligned_cols=22 Identities=14% Similarity=0.443 Sum_probs=19.3
Q ss_pred CceEEEEcCCCeEEEEEEecCc
Q 016030 47 APQILHVQPNKTYRLRIASTTA 68 (396)
Q Consensus 47 ~~~~~~v~~G~~yRlRlINa~~ 68 (396)
.|+.++++||++..+|++..+.
T Consensus 71 tPPl~rl~p~~~q~lRI~~~~~ 92 (226)
T PRK15295 71 TPPLFRLDAGQKNSIRVIRSGA 92 (226)
T ss_pred cCCeEEECCCCceEEEEEECCC
Confidence 5788999999999999998763
No 122
>PF14016 DUF4232: Protein of unknown function (DUF4232)
Probab=27.50 E-value=2.2e+02 Score=23.11 Aligned_cols=60 Identities=17% Similarity=0.157 Sum_probs=39.6
Q ss_pred cCCCe-EEEEEEecCccceEEEEEeCceeEEEEeCCceee-e-----eEeceEEecCCceEEEEEeeCC
Q 016030 54 QPNKT-YRLRIASTTALASLNLAVKNHKMVVVEADGNYVQ-P-----FEVDDMDIYSGESYSVLLTTNQ 115 (396)
Q Consensus 54 ~~G~~-yRlRlINa~~~~~~~~sId~h~l~VIa~DG~~v~-P-----~~v~~l~i~~GqRyDVlv~~~~ 115 (396)
..|.+ ++|.|-|.|....-.-...+ +.....||..+. + .....+.|.||+..-+.|....
T Consensus 16 ~~g~~~~~l~~tN~s~~~C~l~G~P~--v~~~~~~g~~~~~~~~~~~~~~~~vtL~PG~sA~a~l~~~~ 82 (131)
T PF14016_consen 16 GAGQRHATLTFTNTSDTPCTLYGYPG--VALVDADGAPLGVPAVREGPPPRPVTLAPGGSAYAGLRWSN 82 (131)
T ss_pred CCCccEEEEEEEECCCCcEEeccCCc--EEEECCCCCcCCccccccCCCCCcEEECCCCEEEEEEEEec
Confidence 34544 58999999987553333333 555578888542 1 1335699999999988888654
No 123
>PRK10183 hypothetical protein; Provisional
Probab=26.80 E-value=46 Score=23.10 Aligned_cols=19 Identities=16% Similarity=0.301 Sum_probs=14.6
Q ss_pred eEEEEcCCCeEEEEEEecC
Q 016030 49 QILHVQPNKTYRLRIASTT 67 (396)
Q Consensus 49 ~~~~v~~G~~yRlRlINa~ 67 (396)
..+-.-.|+.||||+--+|
T Consensus 32 ~v~I~H~G~~Y~LR~Tr~G 50 (56)
T PRK10183 32 KVIIDHDGQEYLLRKTQAG 50 (56)
T ss_pred EEEEEECCcEEEeEEccCC
Confidence 3455678999999987665
No 124
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=26.32 E-value=2e+02 Score=29.02 Aligned_cols=48 Identities=21% Similarity=0.252 Sum_probs=31.3
Q ss_pred eEEEEEEecCcc-ceEEEEEeCceeEEEEeCCceeeeeEeceEEecCCceEEEEEee
Q 016030 58 TYRLRIASTTAL-ASLNLAVKNHKMVVVEADGNYVQPFEVDDMDIYSGESYSVLLTT 113 (396)
Q Consensus 58 ~yRlRlINa~~~-~~~~~sId~h~l~VIa~DG~~v~P~~v~~l~i~~GqRyDVlv~~ 113 (396)
.|+++|+|-+.. ..+.|+++|.+ |.-++- ..+.+.|.+||+.++.|..
T Consensus 349 ~Y~~~i~Nk~~~~~~~~l~v~g~~-------~~~~~~-~~~~i~v~~g~~~~~~v~v 397 (434)
T TIGR02745 349 TYTLKILNKTEQPHEYYLSVLGLP-------GIKIEG-PGAPIHVKAGEKVKLPVFL 397 (434)
T ss_pred EEEEEEEECCCCCEEEEEEEecCC-------CcEEEc-CCceEEECCCCEEEEEEEE
Confidence 488999998754 56888887743 222210 0127899999998666654
No 125
>PF08400 phage_tail_N: Prophage tail fibre N-terminal; InterPro: IPR013609 This entry represents the N terminus of phage 933W tail fibre protein. The characteristics of the protein distribution suggest prophage matches.
Probab=26.08 E-value=1.1e+02 Score=25.46 Aligned_cols=11 Identities=18% Similarity=-0.100 Sum_probs=8.6
Q ss_pred ceEEEccCCCC
Q 016030 12 YVGLVSHRGQF 22 (396)
Q Consensus 12 ~s~LiNG~g~~ 22 (396)
..+|++|-|.+
T Consensus 6 SGvL~dg~G~p 16 (134)
T PF08400_consen 6 SGVLKDGAGKP 16 (134)
T ss_pred EEEEeCCCCCc
Confidence 46788988875
No 126
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=26.00 E-value=1.3e+02 Score=24.09 Aligned_cols=34 Identities=18% Similarity=0.431 Sum_probs=24.6
Q ss_pred CceEEEEcCCCeEEEEEEecCcc-----ceEEEEEeCce
Q 016030 47 APQILHVQPNKTYRLRIASTTAL-----ASLNLAVKNHK 80 (396)
Q Consensus 47 ~~~~~~v~~G~~yRlRlINa~~~-----~~~~~sId~h~ 80 (396)
.|+.+.++||++..+||+..+.. ..|+|.+....
T Consensus 54 sPp~~~L~pg~~q~vRv~~~~~~~~~~E~~yrl~~~~iP 92 (122)
T PF00345_consen 54 SPPIFRLEPGESQTVRVYRGSKLPIDRESLYRLSFREIP 92 (122)
T ss_dssp ESSEEEEETTEEEEEEEEECSGS-SSS-EEEEEEEEEEE
T ss_pred eCCceEeCCCCcEEEEEEecCCCCCCceEEEEEEEEEEe
Confidence 46789999999999999885541 44566665443
No 127
>PF03633 Glyco_hydro_65C: Glycosyl hydrolase family 65, C-terminal domain ; InterPro: IPR005194 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This family of glycosyl hydrolases (GH65 from CAZY) contains this domain and includes vacuolar acid trehalase and maltose phosphorylases. Maltose phosphorylase (MP) is a dimeric enzyme that catalyzes the conversion of maltose and inorganic phosphate into beta-D-glucose-1-phosphate and glucose. The C-terminal domain forms a two layered jelly roll motif. This domain is situated at the base of the catalytic domain, however its function remains unknown [].; PDB: 1H54_A.
Probab=25.73 E-value=2.1e+02 Score=19.17 Aligned_cols=31 Identities=16% Similarity=0.303 Sum_probs=22.5
Q ss_pred CeEEEEEEecCccceEEEEEeCceeEEEEeCCc
Q 016030 57 KTYRLRIASTTALASLNLAVKNHKMVVVEADGN 89 (396)
Q Consensus 57 ~~yRlRlINa~~~~~~~~sId~h~l~VIa~DG~ 89 (396)
+.++|||.--|. .+.+.|+.++++|....|.
T Consensus 8 ~~l~F~~~~rg~--~l~v~i~~~~v~v~~~~g~ 38 (54)
T PF03633_consen 8 SSLSFRLRYRGH--WLEVEITHEKVTVTLLSGD 38 (54)
T ss_dssp SEEEEEEEETTE--EEEEEEETTEEEEEEEESS
T ss_pred CEeEEEEEECCE--EEEEEEECCEEEEEEccCC
Confidence 457777666554 3788888888888777776
No 128
>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed
Probab=25.39 E-value=2.5e+02 Score=23.14 Aligned_cols=49 Identities=14% Similarity=0.304 Sum_probs=27.2
Q ss_pred eEEEEEEecCccceEEEEEeCceeEEEEeCCceee---e-eEeceEEecCCceEEE
Q 016030 58 TYRLRIASTTALASLNLAVKNHKMVVVEADGNYVQ---P-FEVDDMDIYSGESYSV 109 (396)
Q Consensus 58 ~yRlRlINa~~~~~~~~sId~h~l~VIa~DG~~v~---P-~~v~~l~i~~GqRyDV 109 (396)
.|++||.|-+.. .+.+-.....|...||...+ + +.-..=.|.|||.|.-
T Consensus 32 ~Y~ItI~N~~~~---~vQL~~R~W~I~d~~g~~~~V~G~GVVG~qP~L~PGe~F~Y 84 (127)
T PRK05461 32 AYTITIENLGRV---PVQLLSRHWLITDANGRVQEVRGEGVVGEQPVLAPGESFEY 84 (127)
T ss_pred EEEEEEEECCCC---CEEEEeeeEEEEECCCCEEEEECCceecCCceECCCCCeEE
Confidence 478999998754 24444555555555554321 1 1112335788886654
No 129
>PRK15254 fimbrial chaperone protein StdC; Provisional
Probab=24.67 E-value=1.4e+02 Score=27.52 Aligned_cols=20 Identities=15% Similarity=0.421 Sum_probs=17.7
Q ss_pred CceEEEEcCCCeEEEEEEec
Q 016030 47 APQILHVQPNKTYRLRIAST 66 (396)
Q Consensus 47 ~~~~~~v~~G~~yRlRlINa 66 (396)
.|+.|++++|++..||++-.
T Consensus 67 tPPlfrl~p~~~~~lRI~~~ 86 (239)
T PRK15254 67 LPPLQRIDAGQKSQVRITQV 86 (239)
T ss_pred cCCeEEECCCCceEEEEEEc
Confidence 57889999999999999866
No 130
>PRK15192 fimbrial chaperone BcfG; Provisional
Probab=24.59 E-value=1.3e+02 Score=27.57 Aligned_cols=22 Identities=18% Similarity=0.403 Sum_probs=19.3
Q ss_pred CceEEEEcCCCeEEEEEEecCc
Q 016030 47 APQILHVQPNKTYRLRIASTTA 68 (396)
Q Consensus 47 ~~~~~~v~~G~~yRlRlINa~~ 68 (396)
.|+.|++++|++..||++..+.
T Consensus 79 tPPlfrl~p~~~~~lRI~~~~~ 100 (234)
T PRK15192 79 TPPLFMLSARQENSMRVVYTGA 100 (234)
T ss_pred cCCeEEECCCCceEEEEEECCC
Confidence 5778999999999999998764
No 131
>PF14321 DUF4382: Domain of unknown function (DUF4382)
Probab=24.56 E-value=4e+02 Score=21.91 Aligned_cols=60 Identities=13% Similarity=0.251 Sum_probs=34.4
Q ss_pred eEEEEcCCCeE-EEEEEecCccceEEEEEeC--ceeEEEEeCCceeeeeEeceEEecCCceEEEEEeeCC
Q 016030 49 QILHVQPNKTY-RLRIASTTALASLNLAVKN--HKMVVVEADGNYVQPFEVDDMDIYSGESYSVLLTTNQ 115 (396)
Q Consensus 49 ~~~~v~~G~~y-RlRlINa~~~~~~~~sId~--h~l~VIa~DG~~v~P~~v~~l~i~~GqRyDVlv~~~~ 115 (396)
...++++|+ | .+||.=..+. +.++| +++++=...-..++ ....+.+.+|+.++++++++-
T Consensus 61 ~~~~lpaG~-Y~~irl~l~~~~----v~~~g~~~~l~vps~~~~glk--~~~~~~v~~g~~~~~vlDFDl 123 (139)
T PF14321_consen 61 ADAELPAGT-YNQIRLVLDDAN----VVINGTTYPLKVPSGQQKGLK--LNGNFTVSAGGSYDLVLDFDL 123 (139)
T ss_pred eccccCCCc-EEEEEEEEeCCe----EEECCEEEEEEcCCCCcceeE--EcCCeEEcCCCEEEEEEEEec
Confidence 456688887 5 6776655433 33333 22333222111111 125678899999999999975
No 132
>PF08685 GON: GON domain; InterPro: IPR012314 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. The ADAMTSs (a disintegrin and metalloproteinase domain with thrombospondin type-1 modules) are a family of zinc dependent metalloproteinases that play important roles in a variety of normal and pathological conditions. These enzymes show a complex domain organisation including signal sequence, propeptide, metalloproteinase domain (see PDOC50215 from PROSITEDOC), disintegrin-like domain (see PDOC00351 from PROSITEDOC), central TS-1 motif (see PDOC50092 from PROSITEDOC), cysteine-rich region, and a variable number of TS-like repeats at the C-terminal region. The GON domain is an approximately 200-residue module, whose presence is the hallmark of a subfamily of structurally and evolutionarily related ADAMTSs, called GON- ADAMTSs. The GON domain is characterised by the presence of several conserved cysteine residues and is likely to be globular [], []. Some proteins known to contain a GON domain are listed below: Mammalian ADAMTS-9 Mammalian ADAMTS-20 Caenorhabditis elegans gon-1, a protease required for gonadal morphogenesis Proteins containing the GON domain belong to MEROPS peptidase subfamily M12B (adamalysin, clan MA).; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding
Probab=24.36 E-value=1.5e+02 Score=26.46 Aligned_cols=72 Identities=14% Similarity=0.253 Sum_probs=45.7
Q ss_pred CCCCCCceEEEccCCC-CCCccccccCCCCcccccccCCCCCCceEEEEcCC------CeEEEEEEec------------
Q 016030 6 ASPQGHYVGLVSHRGQ-FNCSLAAHFSNGSAEQCKLRGNEQCAPQILHVQPN------KTYRLRIAST------------ 66 (396)
Q Consensus 6 ~~~~~~~s~LiNG~g~-~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~v~~G------~~yRlRlINa------------ 66 (396)
...-+...++|+|+-. -.|.-+.. ..+.+-++|..| +-|..||.|.
T Consensus 14 ~~~DGEY~L~v~g~~~~IYCh~M~s---------------~~PkEYltL~~G~~eNyae~y~~Rl~~~~~Cp~ng~~~~~ 78 (201)
T PF08685_consen 14 TAKDGEYTLYVQGRPLKIYCHGMAS---------------STPKEYLTLPSGPQENYAEVYGKRLQNPSECPYNGSRRDD 78 (201)
T ss_pred CCCCCCEEEEECCEEEEEEcCCCCC---------------CCCceeEEcCCCCccchheecchhccCCCcCCCCCCCCCC
Confidence 3445667889988864 46765532 222244666644 3345566644
Q ss_pred ----------CccceEEEEEeCceeEEEEeCCceee
Q 016030 67 ----------TALASLNLAVKNHKMVVVEADGNYVQ 92 (396)
Q Consensus 67 ----------~~~~~~~~sId~h~l~VIa~DG~~v~ 92 (396)
|....-+|+||=++|.||..|-.+-+
T Consensus 79 c~c~~~~~~aG~T~F~KvRid~~tl~I~~~D~tFa~ 114 (201)
T PF08685_consen 79 CNCRNDYAAAGRTRFSKVRIDPSTLRIITNDFTFAR 114 (201)
T ss_pred CCCcccccccceeEEEEEEEcccccEEEeCCceEee
Confidence 33456788888899999999988753
No 133
>COG3121 FimC P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=23.88 E-value=1.4e+02 Score=27.36 Aligned_cols=22 Identities=27% Similarity=0.563 Sum_probs=20.0
Q ss_pred CceEEEEcCCCeEEEEEEecCc
Q 016030 47 APQILHVQPNKTYRLRIASTTA 68 (396)
Q Consensus 47 ~~~~~~v~~G~~yRlRlINa~~ 68 (396)
.|+.|+++||+...+||+..+.
T Consensus 79 tPPv~rl~p~~~q~vRi~~~~~ 100 (235)
T COG3121 79 TPPVFRLEPGQEQQLRILYTGN 100 (235)
T ss_pred cCCeEEECCCCccEEEEEecCC
Confidence 5789999999999999999984
No 134
>TIGR00638 Mop molybdenum-pterin binding domain. This model describes a multigene family of molybdenum-pterin binding proteins of about 70 amino acids in Clostridium pasteurianum, as a tandemly-repeated domain C-terminal to an unrelated domain in ModE, a molybdate transport gene repressor of E. coli, and in single or tandemly paired domains in several related proteins.
Probab=23.06 E-value=1.1e+02 Score=21.46 Aligned_cols=46 Identities=9% Similarity=0.164 Sum_probs=26.1
Q ss_pred EecCccceEEEEEeCceeEEEEeCCceeeeeEeceEEecCCceEEEEEeeC
Q 016030 64 ASTTALASLNLAVKNHKMVVVEADGNYVQPFEVDDMDIYSGESYSVLLTTN 114 (396)
Q Consensus 64 INa~~~~~~~~sId~h~l~VIa~DG~~v~P~~v~~l~i~~GqRyDVlv~~~ 114 (396)
...+....+.+.+++.. .+.|. +.+.....+.|.+|+++-+.++..
T Consensus 17 ~~~g~~~~v~l~~~~~~-~l~a~----i~~~~~~~l~l~~G~~v~~~ik~~ 62 (69)
T TIGR00638 17 EDGDVNAEVDLLLGGGT-KLTAV----ITLESVAELGLKPGKEVYAVIKAP 62 (69)
T ss_pred EECCCeEEEEEEECCCC-EEEEE----ecHHHHhhCCCCCCCEEEEEEECc
Confidence 44455555555554431 12222 223445677788899888888764
No 135
>COG1470 Predicted membrane protein [Function unknown]
Probab=22.72 E-value=8.3e+02 Score=24.95 Aligned_cols=75 Identities=23% Similarity=0.357 Sum_probs=48.7
Q ss_pred ceEEEEcCCC--eEEEEEEecCcc--ceEEEEEeCceeEEEEeCCceeeeeEeceEEecCCce--EEEEEeeCCC-CCcc
Q 016030 48 PQILHVQPNK--TYRLRIASTTAL--ASLNLAVKNHKMVVVEADGNYVQPFEVDDMDIYSGES--YSVLLTTNQD-PSYN 120 (396)
Q Consensus 48 ~~~~~v~~G~--~yRlRlINa~~~--~~~~~sId~h~l~VIa~DG~~v~P~~v~~l~i~~GqR--yDVlv~~~~~-~~~~ 120 (396)
+..++..+|+ ..|+++-|-|+. .-+.+.|++-.=|=|.+|+.-+ +. |.||+| +++-|+++.+ ..|+
T Consensus 388 ~~~lt~taGee~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I-----~s--L~pge~~tV~ltI~vP~~a~aGd 460 (513)
T COG1470 388 PYRLTITAGEEKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTI-----PS--LEPGESKTVSLTITVPEDAGAGD 460 (513)
T ss_pred cEEEEecCCccceEEEEEEecCCCccceeeEEecCCccceEEECcccc-----cc--cCCCCcceEEEEEEcCCCCCCCc
Confidence 3567788884 468899999865 3567777766557777776632 33 456665 5566666553 3358
Q ss_pred eEEEEEecC
Q 016030 121 YWISAGVRG 129 (396)
Q Consensus 121 y~ir~~~~~ 129 (396)
|.|+.....
T Consensus 461 Y~i~i~~ks 469 (513)
T COG1470 461 YRITITAKS 469 (513)
T ss_pred EEEEEEEee
Confidence 988776544
No 136
>PF13464 DUF4115: Domain of unknown function (DUF4115)
Probab=22.62 E-value=2.5e+02 Score=20.40 Aligned_cols=10 Identities=10% Similarity=0.238 Sum_probs=4.9
Q ss_pred EEcCCCeEEE
Q 016030 52 HVQPNKTYRL 61 (396)
Q Consensus 52 ~v~~G~~yRl 61 (396)
.+++|+++.|
T Consensus 25 ~l~~G~~~~~ 34 (77)
T PF13464_consen 25 TLKAGETKTF 34 (77)
T ss_pred eeCCCcEEEE
Confidence 3455555444
No 137
>PF08329 ChitinaseA_N: Chitinase A, N-terminal domain; InterPro: IPR013540 This domain is found in a number of bacterial chitinases and similar viral proteins. It is organised into a fibronectin III module domain-like fold, comprising only beta strands. Its function is not known, but it may be involved in interaction with the enzyme substrate, chitin [, ]. It is separated by a hinge region from the catalytic domain (IPR001223 from INTERPRO); this hinge region is probably mobile, allowing the N-terminal domain to have different relative positions in solution []. ; GO: 0004568 chitinase activity; PDB: 2WLY_A 1EDQ_A 2WM0_A 1X6N_A 1NH6_A 2WK2_A 1EHN_A 2WLZ_A 1EIB_A 1FFR_A ....
Probab=21.52 E-value=1.7e+02 Score=24.38 Aligned_cols=44 Identities=18% Similarity=0.391 Sum_probs=25.3
Q ss_pred eEEEEcCCCeE--EEEEEecCccceEEEEEeCceeEEEEeCCceeeeeEe
Q 016030 49 QILHVQPNKTY--RLRIASTTALASLNLAVKNHKMVVVEADGNYVQPFEV 96 (396)
Q Consensus 49 ~~~~v~~G~~y--RlRlINa~~~~~~~~sId~h~l~VIa~DG~~v~P~~v 96 (396)
.+|+++.|=+| +.+|+|+.+ +. .| +-..+.|-.+||..+.|...
T Consensus 75 a~~~~~~gG~y~~~VeLCN~~G-CS--~S-~~~~V~VaDTDGsHl~pL~~ 120 (133)
T PF08329_consen 75 ATFTVTKGGRYQMQVELCNADG-CS--TS-APVEVVVADTDGSHLAPLPY 120 (133)
T ss_dssp EEEEE-S-EEEEEEEEEEETTE-EE--E----EEEEEE-TTSTTS-----
T ss_pred EEEEecCCCEEEEEEEEECCCC-cc--cC-CCEEEEEeCCCccccccccC
Confidence 47888888776 667999987 21 11 24567888899999988654
No 138
>PF02767 DNA_pol3_beta_2: DNA polymerase III beta subunit, central domain; InterPro: IPR022637 This entry describes the central domain of the beta chain of DNA polymerase III. This is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The beta chain is required for initiation of replication from an RNA primer, nucleotide triphosphate (dNTP) residues being added to the 5'-end of the growing DNA chain.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0008408 3'-5' exonuclease activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3T0P_B 3P16_A 3RB9_B 2AWA_C 1VPK_A 2AVT_B 2XUR_B 3Q4K_A 3BEP_A 3D1G_A ....
Probab=21.41 E-value=4e+02 Score=20.99 Aligned_cols=24 Identities=25% Similarity=0.505 Sum_probs=18.7
Q ss_pred cceEEEEEeCceeEEEEeCCceee
Q 016030 69 LASLNLAVKNHKMVVVEADGNYVQ 92 (396)
Q Consensus 69 ~~~~~~sId~h~l~VIa~DG~~v~ 92 (396)
...+.|.+++..+.++|+||.-+.
T Consensus 27 L~Gv~~~~~~~~l~~vATDg~RLa 50 (116)
T PF02767_consen 27 LNGVLFEIENNKLRLVATDGHRLA 50 (116)
T ss_dssp GGEEEEEEETTEEEEEEEESSEEE
T ss_pred eeeEEEEEECCEEEEEEeCCceEE
Confidence 356778888888889999998763
No 139
>COG3241 Azurin [Energy production and conversion]
Probab=21.26 E-value=82 Score=25.66 Aligned_cols=39 Identities=23% Similarity=0.245 Sum_probs=26.9
Q ss_pred EeCCceeeee----EeceEEecCCceEEEEEeeCCC-CCcceEE
Q 016030 85 EADGNYVQPF----EVDDMDIYSGESYSVLLTTNQD-PSYNYWI 123 (396)
Q Consensus 85 a~DG~~v~P~----~v~~l~i~~GqRyDVlv~~~~~-~~~~y~i 123 (396)
+.|-.||+|- ..+.-.|+.|||-++-++...- .|.+|..
T Consensus 89 ~ld~dYvkpdD~RViAHTklIGgGE~~S~Tfd~~kL~~g~~Y~F 132 (151)
T COG3241 89 ALDTDYVKPDDARVIAHTKLIGGGEETSLTFDPAKLADGVEYKF 132 (151)
T ss_pred hhccccCCCCCcceEEEeeeecCCccceEecCHHHhcCCceEEE
Confidence 3455677653 3467789999999999998764 3336644
No 140
>PRK15211 fimbrial chaperone protein PefD; Provisional
Probab=20.65 E-value=1.5e+02 Score=27.00 Aligned_cols=22 Identities=32% Similarity=0.582 Sum_probs=19.1
Q ss_pred CceEEEEcCCCeEEEEEEecCc
Q 016030 47 APQILHVQPNKTYRLRIASTTA 68 (396)
Q Consensus 47 ~~~~~~v~~G~~yRlRlINa~~ 68 (396)
.|+.|++++|++..+|++-.+.
T Consensus 73 tPPlfrl~p~~~q~lRI~~~~~ 94 (229)
T PRK15211 73 APPFFKVRPKEKQIIRIMKTDS 94 (229)
T ss_pred cCCeEEECCCCceEEEEEECCC
Confidence 5778999999999999998764
No 141
>PF10528 PA14_2: GLEYA domain; InterPro: IPR018871 This presumed domain is found in fungal adhesins and is related to the PA14 domain. ; PDB: 4A3X_A.
Probab=20.45 E-value=2e+02 Score=23.09 Aligned_cols=29 Identities=14% Similarity=0.309 Sum_probs=18.7
Q ss_pred eEEEEcCCCeEEEEEE--ecCccceEEEEEe
Q 016030 49 QILHVQPNKTYRLRIA--STTALASLNLAVK 77 (396)
Q Consensus 49 ~~~~v~~G~~yRlRlI--Na~~~~~~~~sId 77 (396)
.+..++.|.-|=+||+ |++....+.|+|-
T Consensus 62 ~tv~L~aG~yyPiRi~~~N~~g~~~~~~~i~ 92 (113)
T PF10528_consen 62 VTVYLTAGTYYPIRIVYANGGGPGSFDFSIT 92 (113)
T ss_dssp EEEEE-TT-BEEEEEEEEE-SS-EEEEEEEE
T ss_pred EEEEEECCcEEEEEEEEEcCCCceEEEEEEE
Confidence 4678999999877776 7777777777663
No 142
>cd09030 DUF1425 Putative periplasmic lipoprotein. This bacterial family of proteins contains members described as putative lipoproteins, some are also known as YcfL. The function of this family is unknown. Family members have also been annotated as predicted periplasmic lipoproteins (COG5633), and appear to contain an N-terminal membrane lipoprotein lipid attachment side (pfam08139), which is not included in this alignment model.
Probab=20.43 E-value=2.3e+02 Score=21.93 Aligned_cols=45 Identities=11% Similarity=0.227 Sum_probs=35.7
Q ss_pred eeEEEEeCCceeeee--EeceEEecCCceEEEEEeeCCCCCcceEEE
Q 016030 80 KMVVVEADGNYVQPF--EVDDMDIYSGESYSVLLTTNQDPSYNYWIS 124 (396)
Q Consensus 80 ~l~VIa~DG~~v~P~--~v~~l~i~~GqRyDVlv~~~~~~~~~y~ir 124 (396)
+|.-+..||-.+.|. .-..+.|.++|+..|--.+......+|.|.
T Consensus 53 rf~WyD~~G~~v~~~~~~w~~l~l~~~~~~~l~~~ap~~~a~~~Rly 99 (101)
T cd09030 53 RFYWYDAQGLEVEPEQEPWQSLTLPGGQTVTLQAVAPNPEAKDFRLY 99 (101)
T ss_pred EEEEECCCCCCcCCCCCCCEEEEECCCCeEEEEEEcCCCCeEEEEEE
Confidence 588899999999875 348899999999999888876544467654
No 143
>PRK10579 hypothetical protein; Provisional
Probab=20.18 E-value=4.1e+02 Score=20.64 Aligned_cols=68 Identities=12% Similarity=0.144 Sum_probs=44.1
Q ss_pred EEEEcCCCeEEEEEEecCccceEEEEEeCc-eeEEEEeCCceeeeeEeceEEecCCceEEEEEeeCCCCCcceEEEEE
Q 016030 50 ILHVQPNKTYRLRIASTTALASLNLAVKNH-KMVVVEADGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAG 126 (396)
Q Consensus 50 ~~~v~~G~~yRlRlINa~~~~~~~~sId~h-~l~VIa~DG~~v~P~~v~~l~i~~GqRyDVlv~~~~~~~~~y~ir~~ 126 (396)
.++..-|.+--|-++-.|. +.|+-+.. .|+||+-.-...-|-..+...+..||.++|- + ...|.|++.
T Consensus 16 ~~~~~dG~~kTlGVm~pGe---y~F~T~~~E~MeivsG~l~V~Lpg~~ew~~~~aG~sF~Vp--a----nssF~l~v~ 84 (94)
T PRK10579 16 GFDSSSTGRASVGVMAEGE---YTFSTAEPEEMTVISGALNVLLPGATDWQVYEAGEVFNVP--G----HSEFHLQVA 84 (94)
T ss_pred EEEcCCCCeeEEEEEeeeE---EEEcCCCcEEEEEEeeEEEEECCCCcccEEeCCCCEEEEC--C----CCeEEEEEC
Confidence 4666677777777777764 67776654 5888776554445666677778888877652 2 225666653
Done!