Query 016031
Match_columns 396
No_of_seqs 138 out of 232
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 03:09:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016031.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016031hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03094 Mlo: Mlo family; Int 100.0 1E-158 3E-163 1212.1 31.7 367 6-396 1-369 (478)
2 PRK11677 hypothetical protein; 63.7 12 0.00027 33.7 4.6 60 15-78 2-70 (134)
3 PF06305 DUF1049: Protein of u 63.5 26 0.00056 26.8 5.8 47 16-62 18-64 (68)
4 TIGR02976 phageshock_pspB phag 60.2 29 0.00064 28.4 5.8 44 15-60 3-56 (75)
5 COG1033 Predicted exporters of 58.7 21 0.00045 40.4 6.3 57 19-75 251-318 (727)
6 TIGR03777 RPE4 Rickettsial pal 54.3 5.5 0.00012 27.8 0.6 10 353-362 23-32 (32)
7 PF07219 HemY_N: HemY protein 52.3 27 0.00058 29.6 4.6 46 12-57 13-65 (108)
8 TIGR03144 cytochr_II_ccsB cyto 47.7 80 0.0017 30.4 7.7 29 50-78 142-170 (243)
9 PF15468 DUF4636: Domain of un 38.9 18 0.00038 35.5 1.6 39 276-319 25-63 (243)
10 PF01578 Cytochrom_C_asm: Cyto 37.6 1.1E+02 0.0023 28.5 6.6 30 50-79 116-145 (214)
11 PF12801 Fer4_5: 4Fe-4S bindin 35.3 72 0.0016 22.8 4.0 36 14-49 1-47 (48)
12 PHA03105 EEV glycoprotein; Pro 33.7 51 0.0011 31.0 3.7 33 18-50 9-41 (188)
13 COG3105 Uncharacterized protei 30.2 99 0.0021 28.2 4.8 61 14-78 6-75 (138)
14 TIGR00921 2A067 The (Largely A 27.0 2.2E+02 0.0048 31.2 7.8 58 17-74 620-687 (719)
15 TIGR00540 hemY_coli hemY prote 26.0 99 0.0021 31.6 4.7 37 12-48 38-81 (409)
16 PF06295 DUF1043: Protein of u 25.8 1.2E+02 0.0027 26.7 4.6 51 27-78 7-66 (128)
17 PF13297 Telomere_Sde2_2: Telo 25.4 37 0.0008 26.9 1.1 13 55-67 17-29 (60)
18 PF09878 DUF2105: Predicted me 24.5 64 0.0014 31.3 2.7 46 285-335 158-206 (212)
19 PRK10747 putative protoheme IX 23.2 1.1E+02 0.0024 31.2 4.4 37 12-48 38-81 (398)
20 PF15050 SCIMP: SCIMP protein 21.1 1.5E+02 0.0033 26.7 4.2 32 16-49 9-40 (133)
21 PF11044 TMEMspv1-c74-12: Plec 20.5 2.1E+02 0.0045 21.7 4.1 29 13-41 1-34 (49)
No 1
>PF03094 Mlo: Mlo family; InterPro: IPR004326 The Mlo-related proteins are a family of plant integral membrane proteins, first discovered in barley. Mutants lacking wild-type Mlo proteins show broad spectrum resistance to the powdery mildew fungus, and dysregulated cell death control, with spontaneous cell death in response to developmental or abiotic stimuli. Thus wild-type Mlo proteins are thought to be inhibitors of cell death whose deficiency lowers the threshold required to trigger the cascade of events that result in plant cell death. Mlo proteins are localized in the plasma membrane and possess seven transmembrane regions; thus the Mlo family is the only major higher plant family to possess 7 transmembrane domains. It has been suggested that Mlo proteins function as G-protein coupled receptors in plants []; however the molecular and biological functions of Mlo proteins is still unclear.; GO: 0008219 cell death, 0016021 integral to membrane
Probab=100.00 E-value=1.4e-158 Score=1212.12 Aligned_cols=367 Identities=57% Similarity=1.053 Sum_probs=346.9
Q ss_pred CCCcccCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccc
Q 016031 6 EGVTLEYTPTWVVAAVCTVIVAISLGAERLLHYLGRYLKNKKQKSLFEALQKVKEELMLLGFISLLLTVFQNTISKICVH 85 (396)
Q Consensus 6 ~~rsLe~TPTWaVA~Vc~v~V~iSl~~Er~lH~lgk~Lkk~~kkaL~eALeKiK~ELMLLGFISLLLtv~q~~IskICIp 85 (396)
|+||||+|||||||+||+|||++|+++||++|++||||+|++||+|++||||||||||||||||||||++|++|+|||||
T Consensus 1 e~rsLe~TptW~va~v~~v~v~is~~~E~~lh~l~~~l~~~~~k~L~~aLekik~ELMlLGfiSLlLt~~q~~IskICIp 80 (478)
T PF03094_consen 1 EGRSLEETPTWAVAVVCTVFVVISILLERGLHRLGKWLKKKKRKALYEALEKIKEELMLLGFISLLLTVFQNPISKICIP 80 (478)
T ss_pred CCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHeecC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCcccccCCCCcccccCCCCCcccccccccccccccccchhhhhhhhhhcccccCccccCCcccccccchhhHHHHH
Q 016031 86 QDVLDNMLPCKRNKTAESEGQNSHVTTTSHFQTFFSSSISGTAKRLLAEEESAASERGYCAQKNKVPLLSTEALHHLHIF 165 (396)
Q Consensus 86 ~~~~~~~lPC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~RrlLa~~~~~~~~~~~C~~~Gkvpl~S~e~lhQLHiF 165 (396)
++++++|+||+.++..+.. .+ +.++||+|+.+++ +++++|++||||||+|.|||||||||
T Consensus 81 ~~~~~~~lPC~~~~~~~~~--------~~----------~~~~r~ll~~~~~--~~~~~C~~kGkvpliS~egLHQLHIF 140 (478)
T PF03094_consen 81 SSYASTMLPCKPPEESSKE--------GS----------SHNRRRLLASGAA--EGSDYCPKKGKVPLISAEGLHQLHIF 140 (478)
T ss_pred hhHHhcccCCCCccccccc--------cc----------chhhhhhhhhhcc--cccCcccccCccccccchhHHHHHHH
Confidence 9999999999965411110 10 1247899984332 35789998899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHhHhhHhhhhcC--CccccccceEEEeeecchhhhhccCCCCCchhHHHHHHHH
Q 016031 166 IFVLAIVHVTFCVLTILFAGARIRQWKNWEDSIAKQDF--DPEQVLKTKVTHVHQHAFIKEHFLGYGKDSALLGWMLSFF 243 (396)
Q Consensus 166 IFvLAv~HV~ys~lTm~Lg~~Kir~Wk~WE~e~~~~~~--~~~~~~~~~~~~~~qttF~~~h~~~~~~~s~~l~w~~cFf 243 (396)
||||||+||+|||+||+||++|||+||+||+|++++++ .+|| +|++++||++|+|+|+ ++|++++++.|++|||
T Consensus 141 IFVLAV~HV~Ys~lTm~Lg~~KIr~Wk~WE~e~~~~~~~~~~d~---~r~~~~~qt~F~r~h~-~~w~~~~~~~wi~~Ff 216 (478)
T PF03094_consen 141 IFVLAVVHVLYSCLTMLLGRAKIRRWKKWEDEAQTDEYQFSNDP---RRFRLTRQTTFVRRHT-SFWSKSPVLSWIVCFF 216 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCc---ceeeeecccHHHHhhc-CCcccChhHHhHHHHH
Confidence 99999999999999999999999999999999998776 4789 9999999999999997 7888899999999999
Q ss_pred HhhccCCchhhHHHHHHhHHhhhcCCCCCCchHHHHHHHhhhccccccchhhHHHHHHHHHHHhccCccchhhhhhhHHH
Q 016031 244 KQFYASITKADYVTLRLGFIMTHCRGSPKFNFHKYMIRALEDDFKRVVGISWYLWIFVVIFLLLNINEWHTYFWIAFIPF 323 (396)
Q Consensus 244 rQF~~SV~k~DYltLR~gFI~~H~~~~~~FdFhkYi~RsLE~DFk~VVGIS~~lW~~vviflLlnv~gw~~yfWlsfiPl 323 (396)
||||+||+|+||+|||+|||++|++++++|||||||+||||||||+||||||+||++||+|+|+|++|||+|||+||||+
T Consensus 217 rQF~~SV~k~DYltLR~gFI~~H~~~~~~FDFh~Yi~RsLEdDFk~VVGIS~~lW~~vv~fll~nv~gw~~yfW~sfipl 296 (478)
T PF03094_consen 217 RQFYGSVTKSDYLTLRHGFITAHLLPNPKFDFHKYIKRSLEDDFKVVVGISWYLWAFVVLFLLLNVHGWHTYFWLSFIPL 296 (478)
T ss_pred HHhhccccHHHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHHheeccccHhhhhheeeeecCCcceeEeehhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHhhhccccccceecCCCCccccCcchHHHHHHHHHHhhhhhhhhHhhhhhcC
Q 016031 324 ILLLAVGAKLEHVISQLAHEVAEKHIAIEGELVVQPSDQHFWFNRPQIVLFLIHFILFQNSFEIAFFFWILVS 396 (396)
Q Consensus 324 illL~VGtKLq~II~~la~ei~~~~~~~~g~~~v~p~D~~FWF~rP~llL~LIhfiLFQNAFelAfF~W~~~~ 396 (396)
+++|+||||||+||++||+|++|++++++|+|+|||||++|||||||+||+||||||||||||||||+|+||+
T Consensus 297 ~liL~VGtKLq~Ii~~ma~ei~~~~~~~~g~p~v~p~d~~FWF~rP~llL~lihfilFqnAFela~f~w~~~~ 369 (478)
T PF03094_consen 297 ILILLVGTKLQHIITKMALEIAERHAVIKGTPLVKPSDDLFWFGRPRLLLHLIHFILFQNAFELAFFFWIWWQ 369 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCcccCcccccccccceecCCcHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999985
No 2
>PRK11677 hypothetical protein; Provisional
Probab=63.74 E-value=12 Score=33.72 Aligned_cols=60 Identities=25% Similarity=0.255 Sum_probs=36.8
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHH---------HHHHHHHHHHHhhhhc
Q 016031 15 TWVVAAVCTVIVAISLGAERLLHYLGRYLKNKKQKSLFEALQKVKEEL---------MLLGFISLLLTVFQNT 78 (396)
Q Consensus 15 TWaVA~Vc~v~V~iSl~~Er~lH~lgk~Lkk~~kkaL~eALeKiK~EL---------MLLGFISLLLtv~q~~ 78 (396)
+|..|++++|+ ++++=.++.++++.= .++++.|-+-||+.|.|| =.--.-.||=+..++|
T Consensus 2 ~W~~a~i~liv---G~iiG~~~~R~~~~~-~~~q~~le~eLe~~k~ele~YkqeV~~HFa~TA~Ll~~L~~~Y 70 (134)
T PRK11677 2 TWEYALIGLVV---GIIIGAVAMRFGNRK-LRQQQALQYELEKNKAELEEYRQELVSHFARSAELLDTMAKDY 70 (134)
T ss_pred cHHHHHHHHHH---HHHHHHHHHhhccch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48888866654 444444455544331 146789999999999998 2334445555555444
No 3
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=63.54 E-value=26 Score=26.81 Aligned_cols=47 Identities=17% Similarity=0.203 Sum_probs=36.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHH
Q 016031 16 WVVAAVCTVIVAISLGAERLLHYLGRYLKNKKQKSLFEALQKVKEEL 62 (396)
Q Consensus 16 WaVA~Vc~v~V~iSl~~Er~lH~lgk~Lkk~~kkaL~eALeKiK~EL 62 (396)
+-++++..+..++++++=-.+.....+=.|++.+.+-+.+++.+.|+
T Consensus 18 ~pl~l~il~~f~~G~llg~l~~~~~~~~~r~~~~~~~k~l~~le~e~ 64 (68)
T PF06305_consen 18 LPLGLLILIAFLLGALLGWLLSLPSRLRLRRRIRRLRKELKKLEKEL 64 (68)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777777788887777777777666777788888999998886
No 4
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=60.22 E-value=29 Score=28.41 Aligned_cols=44 Identities=16% Similarity=0.291 Sum_probs=31.8
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCc----------hhHHHHHHHHHH
Q 016031 15 TWVVAAVCTVIVAISLGAERLLHYLGRYLKNKKQ----------KSLFEALQKVKE 60 (396)
Q Consensus 15 TWaVA~Vc~v~V~iSl~~Er~lH~lgk~Lkk~~k----------kaL~eALeKiK~ 60 (396)
.|.+++-.++|+++-..+.-.+||..|| +..+ ..|++-.+|+++
T Consensus 3 ~~fl~~Pliif~ifVap~wl~lHY~~k~--~~~~~ls~~d~~~L~~L~~~a~rm~e 56 (75)
T TIGR02976 3 IFFLAIPLIIFVIFVAPLWLILHYRSKR--KTAASLSTDDQALLQELYAKADRLEE 56 (75)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhh--ccCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4667777788888888899999999987 4444 455555555554
No 5
>COG1033 Predicted exporters of the RND superfamily [General function prediction only]
Probab=58.67 E-value=21 Score=40.38 Aligned_cols=57 Identities=21% Similarity=0.486 Sum_probs=44.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhcCc-----hhHHHHHHHHHHHHHH------HHHHHHHHHhh
Q 016031 19 AAVCTVIVAISLGAERLLHYLGRYLKNKKQ-----KSLFEALQKVKEELML------LGFISLLLTVF 75 (396)
Q Consensus 19 A~Vc~v~V~iSl~~Er~lH~lgk~Lkk~~k-----kaL~eALeKiK~ELML------LGFISLLLtv~ 75 (396)
.+..++.++|++.++.++|..-++.+.+++ .|+.+|+.|..-=+++ +||+||+.+-.
T Consensus 251 ~s~~~~~llIgiGidy~vh~~nr~~ee~~~~~~~~eAv~~ai~~~g~avl~a~lTT~~GF~Sl~~s~i 318 (727)
T COG1033 251 TTSAVPPLLIGIGIDYGVHFHNRYEEERRKGRTVEEAVVEAIKHTGPAVLIAALTTAAGFLSLLTSSI 318 (727)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHccc
Confidence 345567788999999999999999887766 4777777777766553 79999987543
No 6
>TIGR03777 RPE4 Rickettsial palindromic element RPE4 domain. This model describes protein translations of a family, RPE4, of Rickettsia palindromic elements (RPE). The elements spread within a genome as selfish genetic elements, inserting into genes additional coding region that does not disrupt the reading frame. This model finds RPE-encoded regions in several Rickettsial species and, so far, no where else.
Probab=54.28 E-value=5.5 Score=27.79 Aligned_cols=10 Identities=40% Similarity=0.577 Sum_probs=7.7
Q ss_pred ccceecCCCC
Q 016031 353 GELVVQPSDQ 362 (396)
Q Consensus 353 g~~~v~p~D~ 362 (396)
=+|+||||||
T Consensus 23 LD~VvKPR~D 32 (32)
T TIGR03777 23 LDPVVKPRDD 32 (32)
T ss_pred cccccccCCC
Confidence 4678888886
No 7
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=52.29 E-value=27 Score=29.58 Aligned_cols=46 Identities=20% Similarity=0.353 Sum_probs=34.5
Q ss_pred CCCchhhhHHHHHHHHHHHHHHHHHHH-------HHHHhhhcCchhHHHHHHH
Q 016031 12 YTPTWVVAAVCTVIVAISLGAERLLHY-------LGRYLKNKKQKSLFEALQK 57 (396)
Q Consensus 12 ~TPTWaVA~Vc~v~V~iSl~~Er~lH~-------lgk~Lkk~~kkaL~eALeK 57 (396)
+|.-|...++..+++++-.++.+.+-. +.+|++++|++.-.+|+++
T Consensus 13 e~sl~~~~~~l~~~~~~l~ll~~ll~~~~~~p~~~~~~~~~rr~~ka~~al~~ 65 (108)
T PF07219_consen 13 ETSLWVALILLLLLFVVLYLLLRLLRRLLSLPSRVRRWRRRRRRRKAQRALSR 65 (108)
T ss_pred EeeHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 466677777777777777788887755 5788888888877777764
No 8
>TIGR03144 cytochr_II_ccsB cytochrome c-type biogenesis protein CcsB. Members of this protein family represent one of two essential proteins of system II for c-type cytochrome biogenesis. Additional proteins tend to be part of the system but can be replaced by chemical reductants such as dithiothreitol. This protein is designated CcsB in Bordetella pertussis and some other bacteria, resC in Bacillus (where there is additional N-terminal sequence), and CcsA in chloroplast. We use the CcsB designation here. Member sequences show regions of strong sequence conservation and variable-length, poorly conserved regions in between; sparsely filled columns were removed from the seed alignment prior to model construction.
Probab=47.69 E-value=80 Score=30.43 Aligned_cols=29 Identities=21% Similarity=0.430 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 016031 50 SLFEALQKVKEELMLLGFISLLLTVFQNT 78 (396)
Q Consensus 50 aL~eALeKiK~ELMLLGFISLLLtv~q~~ 78 (396)
|=.+.+||+--.....||+-|.++...+.
T Consensus 142 p~L~~ld~l~~~~~~~Gf~~ltl~li~G~ 170 (243)
T TIGR03144 142 PLLETLDNLSYRTIAIGFPLLTIGIISGA 170 (243)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999988775
No 9
>PF15468 DUF4636: Domain of unknown function (DUF4636)
Probab=38.93 E-value=18 Score=35.47 Aligned_cols=39 Identities=33% Similarity=0.753 Sum_probs=27.6
Q ss_pred HHHHHHHhhhccccccchhhHHHHHHHHHHHhccCccchhhhhh
Q 016031 276 HKYMIRALEDDFKRVVGISWYLWIFVVIFLLLNINEWHTYFWIA 319 (396)
Q Consensus 276 hkYi~RsLE~DFk~VVGIS~~lW~~vviflLlnv~gw~~yfWls 319 (396)
+.|=-| +||+-.++| +..||-||+|++|.=. .+.++|++
T Consensus 25 qdyEc~--KDdsc~~iG-~fLlWyfviilvLm~~--~ras~Wms 63 (243)
T PF15468_consen 25 QDYECR--KDDSCGAIG-SFLLWYFVIILVLMFF--SRASVWMS 63 (243)
T ss_pred cchhhc--cCCccchhh-hHHHHHHHHHHHHHHH--HHHHHHHh
Confidence 445444 899999888 7899999998776522 25666653
No 10
>PF01578 Cytochrom_C_asm: Cytochrome C assembly protein; InterPro: IPR002541 This entry consists of various proteins involved in cytochrome c assembly from mitochondria and bacteria; CycK from Rhizobium leguminosarum [], CcmC from Escherichia coli and Paracoccus denitrificans [, ] and orf240 from Triticum aestivum (Wheat) mitochondria []. The members of this family are probably integral membrane proteins with six predicted transmembrane helices that may comprise the membrane component of an ABC (ATP binding cassette) transporter complex. This transporter may be necessary for transport of some component needed for cytochrome c assembly. One member, R. leguminosarum CycK, contains a putative haem-binding motif []. Wheat orf240 also contains a putative haem-binding motif and is a proposed ABC transporter with c-type haem as its proposed substrate []. However it seems unlikely that all members of this family transport haem or c-type apocytochromes because P. denitrificans CcmC transports neither [].; GO: 0006461 protein complex assembly, 0008535 respiratory chain complex IV assembly, 0016020 membrane
Probab=37.62 E-value=1.1e+02 Score=28.46 Aligned_cols=30 Identities=30% Similarity=0.595 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 016031 50 SLFEALQKVKEELMLLGFISLLLTVFQNTI 79 (396)
Q Consensus 50 aL~eALeKiK~ELMLLGFISLLLtv~q~~I 79 (396)
+-.+.+|++-.-++..||+.|.++..-+.+
T Consensus 116 p~l~~le~~~~~~~~~gf~~lti~l~~G~~ 145 (214)
T PF01578_consen 116 PSLETLERLSYRLILIGFILLTIGLITGAI 145 (214)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHccHHH
Confidence 445778999999999999999998887764
No 11
>PF12801 Fer4_5: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=35.26 E-value=72 Score=22.85 Aligned_cols=36 Identities=25% Similarity=0.229 Sum_probs=23.5
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHH-----------HHHHhhhcCch
Q 016031 14 PTWVVAAVCTVIVAISLGAERLLHY-----------LGRYLKNKKQK 49 (396)
Q Consensus 14 PTWaVA~Vc~v~V~iSl~~Er~lH~-----------lgk~Lkk~~kk 49 (396)
|.|..-+...++++++++..|.-.. ++++.++|.||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~r~~C~~~CP~g~~~~~~~~~~~~~~~~ 47 (48)
T PF12801_consen 1 MAWFWLIGFIGFLLLSLFFGRAWCGWLCPFGALQELLGRWSRRKFKK 47 (48)
T ss_pred CcHHHHHHHHHHHHHHHHHhhhHHhccCCchHHHHHHHHHHHhhcCC
Confidence 3455556666888999999985433 55556555554
No 12
>PHA03105 EEV glycoprotein; Provisional
Probab=33.74 E-value=51 Score=31.03 Aligned_cols=33 Identities=27% Similarity=0.200 Sum_probs=28.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhcCchh
Q 016031 18 VAAVCTVIVAISLGAERLLHYLGRYLKNKKQKS 50 (396)
Q Consensus 18 VA~Vc~v~V~iSl~~Er~lH~lgk~Lkk~~kka 50 (396)
+.++|+.++++..++=-.-|...|+|+|+++|+
T Consensus 9 ~vv~~SfiiLi~Yll~i~K~~iKKflkkkk~K~ 41 (188)
T PHA03105 9 VVVPLSFIVLILYIFFICKNTIKKFLKKKKGKN 41 (188)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 346788899999999999999999999888864
No 13
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.21 E-value=99 Score=28.21 Aligned_cols=61 Identities=31% Similarity=0.298 Sum_probs=39.4
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHH---------HHHHHHHHHHhhhhc
Q 016031 14 PTWVVAAVCTVIVAISLGAERLLHYLGRYLKNKKQKSLFEALQKVKEELM---------LLGFISLLLTVFQNT 78 (396)
Q Consensus 14 PTWaVA~Vc~v~V~iSl~~Er~lH~lgk~Lkk~~kkaL~eALeKiK~ELM---------LLGFISLLLtv~q~~ 78 (396)
-+|..|.+-.| +++++-..+-+|++- +-|+|+.+-.-|||+|.+|= .----+||=|..|+|
T Consensus 6 ~~W~~a~igLv---vGi~IG~li~Rlt~~-~~k~q~~~q~ELe~~K~~ld~~rqel~~HFa~sAeLlktl~~dY 75 (138)
T COG3105 6 MTWEYALIGLV---VGIIIGALIARLTNR-KLKQQQKLQYELEKVKAQLDEYRQELVKHFARSAELLKTLAQDY 75 (138)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHcch-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888776543 444455555555554 23456688888999998763 233467888888877
No 14
>TIGR00921 2A067 The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea.
Probab=26.97 E-value=2.2e+02 Score=31.19 Aligned_cols=58 Identities=24% Similarity=0.504 Sum_probs=39.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCc----hhHHHHHHHHHHHH------HHHHHHHHHHHh
Q 016031 17 VVAAVCTVIVAISLGAERLLHYLGRYLKNKKQ----KSLFEALQKVKEEL------MLLGFISLLLTV 74 (396)
Q Consensus 17 aVA~Vc~v~V~iSl~~Er~lH~lgk~Lkk~~k----kaL~eALeKiK~EL------MLLGFISLLLtv 74 (396)
.+..+....+++++.++..+|.+.+|.+++++ +++.+|+.+.=.=+ +..||.+|+++-
T Consensus 620 ~~~~~~~~~i~lGigvDy~i~~~~r~~~~~~~~~~~~ai~~a~~~~g~ai~~s~lt~~~gf~~l~~s~ 687 (719)
T TIGR00921 620 FLAMATTISIILGLGMDYSIHLAERYFEERKEHGPKEAITHTMERTGPGILFSGLTTAGGFLSLLLSH 687 (719)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcc
Confidence 34555666788999999999999999776543 56666666655533 445676666543
No 15
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=26.03 E-value=99 Score=31.61 Aligned_cols=37 Identities=16% Similarity=0.098 Sum_probs=23.4
Q ss_pred CCCchhhhHHHHHHHHHHHHHHHHHH-------HHHHHhhhcCc
Q 016031 12 YTPTWVVAAVCTVIVAISLGAERLLH-------YLGRYLKNKKQ 48 (396)
Q Consensus 12 ~TPTWaVA~Vc~v~V~iSl~~Er~lH-------~lgk~Lkk~~k 48 (396)
+|+=|+..++..+++++.+++++++. .+.+|+.++|+
T Consensus 38 e~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~~~~r~~ 81 (409)
T TIGR00540 38 EMSITGLAIFFIIALAIIFAFEWGLRRFFRLGAHSRGWFSGRKR 81 (409)
T ss_pred EeeHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 45556665555555666667888884 45567777554
No 16
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=25.84 E-value=1.2e+02 Score=26.70 Aligned_cols=51 Identities=25% Similarity=0.206 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHH---------HHHHHHHHHHhhhhc
Q 016031 27 AISLGAERLLHYLGRYLKNKKQKSLFEALQKVKEELM---------LLGFISLLLTVFQNT 78 (396)
Q Consensus 27 ~iSl~~Er~lH~lgk~Lkk~~kkaL~eALeKiK~ELM---------LLGFISLLLtv~q~~ 78 (396)
+|++++=.++.++++.= .++++.|-+.|++.|+||= +-.-.-||=...+++
T Consensus 7 vvG~iiG~~~~r~~~~~-~~~q~~l~~eL~~~k~el~~yk~~V~~HF~~ta~Ll~~l~~~Y 66 (128)
T PF06295_consen 7 VVGLIIGFLIGRLTSSN-QQKQAKLEQELEQAKQELEQYKQEVNDHFAQTAELLDNLTQDY 66 (128)
T ss_pred HHHHHHHHHHHHHhccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455554432 2345789999999999983 556666777666655
No 17
>PF13297 Telomere_Sde2_2: Telomere stability C-terminal
Probab=25.43 E-value=37 Score=26.94 Aligned_cols=13 Identities=46% Similarity=0.833 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHH
Q 016031 55 LQKVKEELMLLGF 67 (396)
Q Consensus 55 LeKiK~ELMLLGF 67 (396)
+|++|+|||-+|.
T Consensus 17 ldrLK~~L~a~GL 29 (60)
T PF13297_consen 17 LDRLKSALMALGL 29 (60)
T ss_pred HHHHHHHHHHcCC
Confidence 7999999999884
No 18
>PF09878 DUF2105: Predicted membrane protein (DUF2105); InterPro: IPR019212 This entry represents a protein found in various hypothetical archaeal proteins, has no known function.
Probab=24.47 E-value=64 Score=31.29 Aligned_cols=46 Identities=35% Similarity=0.684 Sum_probs=30.0
Q ss_pred hccccccchhhHHHHHHHHHHHhccCccchhhhhhhHHH---HHHHHhhhhHHH
Q 016031 285 DDFKRVVGISWYLWIFVVIFLLLNINEWHTYFWIAFIPF---ILLLAVGAKLEH 335 (396)
Q Consensus 285 ~DFk~VVGIS~~lW~~vviflLlnv~gw~~yfWlsfiPl---illL~VGtKLq~ 335 (396)
|-...+-||.|.+|++.-+..++ ..-.|+.++=+ -+++=||+|+--
T Consensus 158 egi~~~SGiaWalWi~gF~~Ff~-----~P~~Wl~~L~lAg~gl~iKV~sKlgL 206 (212)
T PF09878_consen 158 EGIEGVSGIAWALWIAGFIGFFL-----FPQYWLLALMLAGCGLLIKVGSKLGL 206 (212)
T ss_pred ehhhhhhhHHHHHHHHHHHHHHH-----hHHHHHHHHHHHhcchhhhhhhhhhh
Confidence 44567889999999987655555 34456654332 356668888764
No 19
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=23.20 E-value=1.1e+02 Score=31.23 Aligned_cols=37 Identities=16% Similarity=0.190 Sum_probs=26.7
Q ss_pred CCCchhhhHHHHHHHHHHHHHHHHHHH-------HHHHhhhcCc
Q 016031 12 YTPTWVVAAVCTVIVAISLGAERLLHY-------LGRYLKNKKQ 48 (396)
Q Consensus 12 ~TPTWaVA~Vc~v~V~iSl~~Er~lH~-------lgk~Lkk~~k 48 (396)
+|+=|..++++.+++++.+++++.+.+ +..|+.++|+
T Consensus 38 e~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~rr~ 81 (398)
T PRK10747 38 ETSVTGLAIILILAMVVLFAIEWLLRRIFRTGARTRGWFVGRKR 81 (398)
T ss_pred EehHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHH
Confidence 566777777777777777788888854 4577777555
No 20
>PF15050 SCIMP: SCIMP protein
Probab=21.05 E-value=1.5e+02 Score=26.74 Aligned_cols=32 Identities=25% Similarity=0.474 Sum_probs=22.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCch
Q 016031 16 WVVAAVCTVIVAISLGAERLLHYLGRYLKNKKQK 49 (396)
Q Consensus 16 WaVA~Vc~v~V~iSl~~Er~lH~lgk~Lkk~~kk 49 (396)
|++-+|. ||++|+.+--++--+-+|+-|+.||
T Consensus 9 WiiLAVa--II~vS~~lglIlyCvcR~~lRqGkk 40 (133)
T PF15050_consen 9 WIILAVA--IILVSVVLGLILYCVCRWQLRQGKK 40 (133)
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHHHHHcccc
Confidence 6666665 6666766667777788888777664
No 21
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=20.48 E-value=2.1e+02 Score=21.74 Aligned_cols=29 Identities=17% Similarity=0.387 Sum_probs=13.9
Q ss_pred CCchhhhH-----HHHHHHHHHHHHHHHHHHHHH
Q 016031 13 TPTWVVAA-----VCTVIVAISLGAERLLHYLGR 41 (396)
Q Consensus 13 TPTWaVA~-----Vc~v~V~iSl~~Er~lH~lgk 41 (396)
.|||.--. +..+|.-+++.+=..+..+..
T Consensus 1 mp~wlt~iFsvvIil~If~~iGl~IyQkikqIrg 34 (49)
T PF11044_consen 1 MPTWLTTIFSVVIILGIFAWIGLSIYQKIKQIRG 34 (49)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 38885332 223333355555555555543
Done!