Query 016031
Match_columns 396
No_of_seqs 138 out of 232
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 06:42:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016031.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016031hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2knc_A Integrin alpha-IIB; tra 43.4 48 0.0017 24.6 5.4 37 11-48 8-44 (54)
2 2l8s_A Integrin alpha-1; trans 36.8 18 0.00061 27.0 2.1 43 11-56 5-48 (54)
3 2k1a_A Integrin alpha-IIB; sin 36.1 41 0.0014 23.7 3.8 36 11-47 6-41 (42)
4 1rh4_A Right-handed coiled coi 17.9 63 0.0022 21.6 1.8 16 47-62 18-33 (35)
5 2jwa_A Receptor tyrosine-prote 17.1 1E+02 0.0036 21.9 3.0 30 15-49 12-41 (44)
6 4h62_K Mediator of RNA polymer 16.2 75 0.0026 21.8 1.9 22 46-67 7-28 (40)
7 2uwj_E Type III export protein 14.3 59 0.002 25.4 1.2 33 32-64 8-40 (70)
8 3ezq_A Tumor necrosis factor r 13.4 1.7E+02 0.0059 24.6 3.9 28 32-59 49-80 (115)
9 1zke_A Hypothetical protein HP 12.0 33 0.0011 27.4 -0.9 19 48-66 64-82 (83)
10 4h63_Q Mediator of RNA polymer 11.7 1.8E+02 0.0062 29.8 4.2 27 47-73 28-55 (469)
No 1
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=43.44 E-value=48 Score=24.61 Aligned_cols=37 Identities=14% Similarity=0.158 Sum_probs=20.1
Q ss_pred cCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCc
Q 016031 11 EYTPTWVVAAVCTVIVAISLGAERLLHYLGRYLKNKKQ 48 (396)
Q Consensus 11 e~TPTWaVA~Vc~v~V~iSl~~Er~lH~lgk~Lkk~~k 48 (396)
+..|.|.+.+-...-+++=.++=-++.++| +|||+++
T Consensus 8 ~~vp~wiIi~svl~GLllL~li~~~LwK~G-FFkR~~~ 44 (54)
T 2knc_A 8 RAIPIWWVLVGVLGGLLLLTILVLAMWKVG-FFKRNRP 44 (54)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HTTTTCC
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHcC-cccCCCC
Confidence 368999654333322333333445677777 6666554
No 2
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=36.84 E-value=18 Score=27.03 Aligned_cols=43 Identities=21% Similarity=0.325 Sum_probs=20.9
Q ss_pred cCCCchhhhH-HHHHHHHHHHHHHHHHHHHHHHhhhcCchhHHHHHH
Q 016031 11 EYTPTWVVAA-VCTVIVAISLGAERLLHYLGRYLKNKKQKSLFEALQ 56 (396)
Q Consensus 11 e~TPTWaVA~-Vc~v~V~iSl~~Er~lH~lgk~Lkk~~kkaL~eALe 56 (396)
+..|.|.+.+ |+.-+++++ ++=-++-++| +|||++ ++..+.||
T Consensus 5 ~~vp~WiIi~svl~GLLLL~-Lii~~LwK~G-FFKR~~-~~~~~~~~ 48 (54)
T 2l8s_A 5 GRVPLWVILLSAFAGLLLLM-LLILALWKIG-FFKRPL-KKKMEKLE 48 (54)
T ss_dssp CCCCTHHHHHHHHHHHHHHH-HHHHHHHHHH-HTTSCC-SCCCCC--
T ss_pred ccCchHHHHHHHHHHHHHHH-HHHHHHHHcC-cccCCC-cchhhHHh
Confidence 4689996432 222222222 3334666777 665554 44444444
No 3
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=36.07 E-value=41 Score=23.72 Aligned_cols=36 Identities=14% Similarity=0.164 Sum_probs=17.7
Q ss_pred cCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 016031 11 EYTPTWVVAAVCTVIVAISLGAERLLHYLGRYLKNKK 47 (396)
Q Consensus 11 e~TPTWaVA~Vc~v~V~iSl~~Er~lH~lgk~Lkk~~ 47 (396)
+..|.|.+.+-...-+++=.++=-++.++| +|||++
T Consensus 6 ~~vp~wiIi~s~l~GLllL~li~~~LwK~G-FFkR~~ 41 (42)
T 2k1a_A 6 RAIPIWWVLVGVLGGLLLLTILVLAMWKVG-FFKRNR 41 (42)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHTT-TTCCCC
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHcC-cccCCC
Confidence 468999643322222222223345566666 555543
No 4
>1rh4_A Right-handed coiled coil tetramer; de novo design; 1.90A {Synthetic construct} SCOP: k.17.1.1
Probab=17.86 E-value=63 Score=21.57 Aligned_cols=16 Identities=31% Similarity=0.615 Sum_probs=12.8
Q ss_pred CchhHHHHHHHHHHHH
Q 016031 47 KQKSLFEALQKVKEEL 62 (396)
Q Consensus 47 ~kkaL~eALeKiK~EL 62 (396)
-|-..+.||.|||.|+
T Consensus 18 ikaeilaalkkikqei 33 (35)
T 1rh4_A 18 IKAEILAALKKIKQEI 33 (35)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3567888999999885
No 5
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=17.10 E-value=1e+02 Score=21.93 Aligned_cols=30 Identities=30% Similarity=0.593 Sum_probs=14.7
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCch
Q 016031 15 TWVVAAVCTVIVAISLGAERLLHYLGRYLKNKKQK 49 (396)
Q Consensus 15 TWaVA~Vc~v~V~iSl~~Er~lH~lgk~Lkk~~kk 49 (396)
|++.|.|..+++++-+.+ -++=|+|||+++
T Consensus 12 ~~Ia~~vVGvll~vi~~l-----~~~~~~RRR~~~ 41 (44)
T 2jwa_A 12 TSIISAVVGILLVVVLGV-----VFGILIKRRQQK 41 (44)
T ss_dssp HHHHHHHHHHHHHHHHHH-----HHHHHHHHHCSC
T ss_pred cchHHHHHHHHHHHHHHH-----HHHhheehhhhh
Confidence 456666555433222222 234577776654
No 6
>4h62_K Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; HET: MES; 3.00A {Saccharomyces cerevisiae}
Probab=16.17 E-value=75 Score=21.77 Aligned_cols=22 Identities=32% Similarity=0.363 Sum_probs=18.3
Q ss_pred cCchhHHHHHHHHHHHHHHHHH
Q 016031 46 KKQKSLFEALQKVKEELMLLGF 67 (396)
Q Consensus 46 ~~kkaL~eALeKiK~ELMLLGF 67 (396)
-+||+|-.--||+.|.|=||.-
T Consensus 7 vnkkalgqdtekmeeqldllsa 28 (40)
T 4h62_K 7 VNKKALGQDTEKMEEQLDLLSA 28 (40)
T ss_pred ccHHhhcccHHHHHHHHHHHHH
Confidence 4688999999999999887643
No 7
>2uwj_E Type III export protein PSCE; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=14.27 E-value=59 Score=25.42 Aligned_cols=33 Identities=21% Similarity=0.133 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHH
Q 016031 32 AERLLHYLGRYLKNKKQKSLFEALQKVKEELML 64 (396)
Q Consensus 32 ~Er~lH~lgk~Lkk~~kkaL~eALeKiK~ELML 64 (396)
+|..|+-.+.-..++=+-.|..||.++|.+|++
T Consensus 8 LE~~L~~~~~~~~~~i~~~L~qAl~~vKrqL~~ 40 (70)
T 2uwj_E 8 LETRLSVADGTHAAALRQRLQAALAECRRELAR 40 (70)
T ss_dssp HHHHHTSSSTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444444444455566899999999999985
No 8
>3ezq_A Tumor necrosis factor receptor superfamily member; apoptosis, DISC, FAS, membrane,receptor, transmembrane; 2.73A {Homo sapiens} SCOP: a.77.1.2 PDB: 1ddf_A
Probab=13.35 E-value=1.7e+02 Score=24.57 Aligned_cols=28 Identities=25% Similarity=0.386 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHhhhcCchh----HHHHHHHHH
Q 016031 32 AERLLHYLGRYLKNKKQKS----LFEALQKVK 59 (396)
Q Consensus 32 ~Er~lH~lgk~Lkk~~kka----L~eALeKiK 59 (396)
.|+....|-+|.+++++++ |.+||.+++
T Consensus 49 ~Eq~~qlLr~W~~~~G~~aa~~~Li~aLr~~~ 80 (115)
T 3ezq_A 49 AEQKVQLLRNWHQLHGKKEAYDTLIKDLKKAN 80 (115)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcccHHHHHHHHHHHcc
Confidence 4899999999999998884 556666543
No 9
>1zke_A Hypothetical protein HP1531; layer of helix-turn-helix, structural G PSI, protein structure initiative, midwest center for struc genomics; 1.60A {Helicobacter pylori} SCOP: a.30.6.1
Probab=12.04 E-value=33 Score=27.43 Aligned_cols=19 Identities=42% Similarity=0.735 Sum_probs=15.1
Q ss_pred chhHHHHHHHHHHHHHHHH
Q 016031 48 QKSLFEALQKVKEELMLLG 66 (396)
Q Consensus 48 kkaL~eALeKiK~ELMLLG 66 (396)
=|...+||.|+|.|+...|
T Consensus 64 LKe~IdaLNK~Kke~lv~~ 82 (83)
T 1zke_A 64 LKELINALNKIKKGLLVFG 82 (83)
T ss_dssp HHHHHHHHHHHHGGGCSTT
T ss_pred HHHHHHHHHHHHHHHhhcC
Confidence 3678899999999986544
No 10
>4h63_Q Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; 3.40A {Schizosaccharomyces pombe}
Probab=11.66 E-value=1.8e+02 Score=29.83 Aligned_cols=27 Identities=37% Similarity=0.469 Sum_probs=24.0
Q ss_pred CchhHHHHHHHHHHHHHH-HHHHHHHHH
Q 016031 47 KQKSLFEALQKVKEELML-LGFISLLLT 73 (396)
Q Consensus 47 ~kkaL~eALeKiK~ELML-LGFISLLLt 73 (396)
.|+.|.+-+.-...|+|+ |=|+||||+
T Consensus 28 ~R~Eml~~i~~A~nE~slaLDfvSLLLS 55 (469)
T 4h63_Q 28 YKKELIEQIMIAQTECSLALDMTSLLLS 55 (469)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 366899999999999998 999999996
Done!