Query 016031
Match_columns 396
No_of_seqs 138 out of 232
Neff 4.6
Searched_HMMs 13730
Date Mon Mar 25 06:42:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016031.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/016031hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vf6c_ a.194.1.1 (C:) Maguk p 25.6 13 0.00098 25.3 1.5 18 370-387 29-46 (51)
2 d1yu8x1 a.14.1.1 (X:42-76) Vil 11.5 18 0.0013 23.0 -0.6 12 284-295 3-14 (35)
3 d1unda_ a.14.1.1 (A:) Advillin 11.4 19 0.0014 23.1 -0.6 12 284-295 4-15 (36)
4 d3b60a2 f.37.1.1 (A:10-328) Mu 11.2 1.6E+02 0.011 23.4 5.3 24 16-39 156-179 (319)
5 d2pila_ d.24.1.1 (A:) Pilin Gc 10.9 1.7E+02 0.012 21.1 5.1 39 22-60 7-45 (158)
6 d1xrda1 f.3.1.1 (A:1-52) Light 10.4 61 0.0044 22.2 1.9 16 159-174 14-30 (52)
7 d1q1ha_ a.4.5.41 (A:) Transcri 10.0 24 0.0017 26.8 -0.5 7 311-317 74-80 (88)
8 d1zkea1 a.30.6.1 (A:1-79) Hypo 9.7 44 0.0032 24.6 0.9 16 48-63 62-77 (79)
9 d1iwga8 f.35.1.1 (A:513-566,A: 9.5 1.8E+02 0.013 23.9 5.2 57 18-74 111-179 (222)
10 d2gola1 a.61.1.1 (A:7-107) HIV 9.2 43 0.0031 25.9 0.8 13 49-61 89-101 (101)
No 1
>d1vf6c_ a.194.1.1 (C:) Maguk p55 subfamily member 5, Patj {Mouse (Mus musculus) [TaxId: 10090]}
Probab=25.61 E-value=13 Score=25.29 Aligned_cols=18 Identities=39% Similarity=0.589 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHhhhhhhh
Q 016031 370 QIVLFLIHFILFQNSFEI 387 (396)
Q Consensus 370 ~llL~LIhfiLFQNAFel 387 (396)
.++|-|.|=.=|||||.|
T Consensus 29 ~l~lqLvqn~DFQnAfkI 46 (51)
T d1vf6c_ 29 SLLLQLVQNRDFQNAFKI 46 (51)
T ss_dssp HHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHH
Confidence 578999999999999976
No 2
>d1yu8x1 a.14.1.1 (X:42-76) Villin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=11.52 E-value=18 Score=23.03 Aligned_cols=12 Identities=42% Similarity=0.894 Sum_probs=10.6
Q ss_pred hhccccccchhh
Q 016031 284 EDDFKRVVGISW 295 (396)
Q Consensus 284 E~DFk~VVGIS~ 295 (396)
++||+.|.|+|-
T Consensus 3 d~dF~~vfgmsr 14 (35)
T d1yu8x1 3 DEDFKAVFGMTR 14 (35)
T ss_dssp HHHHHHHHSSCH
T ss_pred HHHHHHHHCCCH
Confidence 689999999985
No 3
>d1unda_ a.14.1.1 (A:) Advillin {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.38 E-value=19 Score=23.13 Aligned_cols=12 Identities=50% Similarity=0.786 Sum_probs=10.6
Q ss_pred hhccccccchhh
Q 016031 284 EDDFKRVVGISW 295 (396)
Q Consensus 284 E~DFk~VVGIS~ 295 (396)
++||..|.|+|-
T Consensus 4 d~dF~~vFgmsr 15 (36)
T d1unda_ 4 EQDFVSVFGITR 15 (36)
T ss_dssp HHHHHHHHSSCH
T ss_pred HHHHHHHHCcCH
Confidence 689999999985
No 4
>d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=11.18 E-value=1.6e+02 Score=23.42 Aligned_cols=24 Identities=21% Similarity=0.319 Sum_probs=15.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHH
Q 016031 16 WVVAAVCTVIVAISLGAERLLHYL 39 (396)
Q Consensus 16 WaVA~Vc~v~V~iSl~~Er~lH~l 39 (396)
|.++.++.+.+.+.+++-....+-
T Consensus 156 ~~l~li~l~~~~~~~~~~~~~~~~ 179 (319)
T d3b60a2 156 WQLSIILVVLAPIVSIAIRVVSKR 179 (319)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhHHHHHHHHHHhhhhH
Confidence 666777777777777665544443
No 5
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=10.88 E-value=1.7e+02 Score=21.11 Aligned_cols=39 Identities=15% Similarity=0.080 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCchhHHHHHHHHHH
Q 016031 22 CTVIVAISLGAERLLHYLGRYLKNKKQKSLFEALQKVKE 60 (396)
Q Consensus 22 c~v~V~iSl~~Er~lH~lgk~Lkk~~kkaL~eALeKiK~ 60 (396)
..|+++|+++.==++=.+.++.+|.+++.....+.-++.
T Consensus 7 lVViaIIgILaaia~P~~~~~~~~a~~~~~~~~l~~i~~ 45 (158)
T d2pila_ 7 MIVIAIVGILAAVALPAYQDYTARAQVSEAILLAEGQKS 45 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666666667777777777666555544444433
No 6
>d1xrda1 f.3.1.1 (A:1-52) Light-harvesting complex subunits {Rhodospirillum rubrum [TaxId: 1085]}
Probab=10.43 E-value=61 Score=22.25 Aligned_cols=16 Identities=50% Similarity=0.843 Sum_probs=11.8
Q ss_pred hhHHHHHHHHHHHH-HH
Q 016031 159 LHHLHIFIFVLAIV-HV 174 (396)
Q Consensus 159 lhQLHiFIFvLAv~-HV 174 (396)
+--++.|.|+||+. |.
T Consensus 14 lva~~~fL~~LAl~IHf 30 (52)
T d1xrda1 14 LVGLATFLFVLALLIHF 30 (52)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34478999999964 54
No 7
>d1q1ha_ a.4.5.41 (A:) Transcription factor E/IIe-alpha, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=10.00 E-value=24 Score=26.77 Aligned_cols=7 Identities=43% Similarity=1.891 Sum_probs=3.7
Q ss_pred ccchhhh
Q 016031 311 EWHTYFW 317 (396)
Q Consensus 311 gw~~yfW 317 (396)
||++|+|
T Consensus 74 gw~~Y~W 80 (88)
T d1q1ha_ 74 GWFIYYW 80 (88)
T ss_dssp CCCEEEE
T ss_pred CcEEEEE
Confidence 4555555
No 8
>d1zkea1 a.30.6.1 (A:1-79) Hypothetical protein HP1531 {Helicobacter pylori [TaxId: 210]}
Probab=9.66 E-value=44 Score=24.61 Aligned_cols=16 Identities=44% Similarity=0.657 Sum_probs=13.0
Q ss_pred chhHHHHHHHHHHHHH
Q 016031 48 QKSLFEALQKVKEELM 63 (396)
Q Consensus 48 kkaL~eALeKiK~ELM 63 (396)
=|+..+||.|+|.|+.
T Consensus 62 LK~~IdaLNKiKke~l 77 (79)
T d1zkea1 62 LKELINALNKIKKGLL 77 (79)
T ss_dssp HHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3678899999999873
No 9
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=9.51 E-value=1.8e+02 Score=23.94 Aligned_cols=57 Identities=21% Similarity=0.281 Sum_probs=39.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhh--hcCchhHHHHHHHHHHHH----------HHHHHHHHHHHh
Q 016031 18 VAAVCTVIVAISLGAERLLHYLGRYLK--NKKQKSLFEALQKVKEEL----------MLLGFISLLLTV 74 (396)
Q Consensus 18 VA~Vc~v~V~iSl~~Er~lH~lgk~Lk--k~~kkaL~eALeKiK~EL----------MLLGFISLLLtv 74 (396)
+.+....++++++.++.++|.+..+-+ +++.++..+|..+--+|- +.+||++|.+.-
T Consensus 111 ~~~~~g~i~l~Gi~v~~~i~~~~~~~~~~~~~g~~~~~Ai~~a~~~~~~~i~~t~ltti~gf~pl~~~~ 179 (222)
T d1iwga8 111 VYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKGLIEATLDAVRMRLRPILMTSLAFILGVMPLVIST 179 (222)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCTTHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hhhcccccchhhhhhhHHHHHHHHhccccccccCCHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcc
Confidence 445566778899999999999998865 333355555554444443 378999988753
No 10
>d2gola1 a.61.1.1 (A:7-107) HIV-1 matrix protein (HIV-1 MA, HIVp17, p17, MA) {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=9.24 E-value=43 Score=25.95 Aligned_cols=13 Identities=54% Similarity=0.634 Sum_probs=10.7
Q ss_pred hhHHHHHHHHHHH
Q 016031 49 KSLFEALQKVKEE 61 (396)
Q Consensus 49 kaL~eALeKiK~E 61 (396)
|.=-|||+||+||
T Consensus 89 kDTkEAl~kieee 101 (101)
T d2gola1 89 KDTKEALDKIEEE 101 (101)
T ss_dssp SBHHHHHHHHHHC
T ss_pred CchHHHHHHHhcC
Confidence 4557999999987
Done!