BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016032
(396 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 152 bits (383), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 98/331 (29%), Positives = 163/331 (49%), Gaps = 23/331 (6%)
Query: 21 RRVTCLEFHPTNNHILLSGDKKGQVGVWDF-YKVSEKIVYGNIHSCIVNNIRFNPTNDGT 79
RR T L +HPT+ + G K G + +W+F K + G + ++FNP N
Sbjct: 120 RRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQ 179
Query: 80 VYAASSDGTVSCTDLETGLALSLMNVNP-NGWHGPRTWRMLYGMDINPEKGVVLVADNFG 138
YA+S +GT D + + + + N W +D++ +V+ DN G
Sbjct: 180 FYASSMEGTTRLQDFKGNILRVFASSDTINIW--------FCSLDVSASSRMVVTGDNVG 231
Query: 139 FLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGS 198
+ L++ + + + +H+K KV + NP L + D +IWD+R++ +
Sbjct: 232 NVILLN--MDGKELWNLRMHKK--KVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKA 287
Query: 199 S-LCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHL 257
S L LPH+ VN+A FSP G+++LTT Q + +R++ + D P I H H +HL
Sbjct: 288 SFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSA--SQWDCPLGLIPHPHRHFQHL 345
Query: 258 TPFRAEWDPKDPSESLAVIGRYISENYNGAA---LHPIDFIDITTGQLVAEVMDPNITTI 314
TP +A W P+ +L V+GRY N+ L ID D +G+++ ++ DP + I
Sbjct: 346 TPIKAAWHPR---YNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGI 402
Query: 315 SPVNKLHPRDDVLASGSSRSIFIWRPKEKSE 345
S +N+ +P D LAS I IW +E++
Sbjct: 403 SSLNEFNPMGDTLASAMGYHILIWSEQEEAR 433
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 151 bits (382), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 98/328 (29%), Positives = 161/328 (49%), Gaps = 23/328 (7%)
Query: 21 RRVTCLEFHPTNNHILLSGDKKGQVGVWDF-YKVSEKIVYGNIHSCIVNNIRFNPTNDGT 79
RR T L +HPT+ + G K G + +W+F K + G + ++FNP N
Sbjct: 120 RRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQ 179
Query: 80 VYAASSDGTVSCTDLETGLALSLMNVNP-NGWHGPRTWRMLYGMDINPEKGVVLVADNFG 138
YA+S +GT D + + + + N W +D++ +V+ DN G
Sbjct: 180 FYASSMEGTTRLQDFKGNILRVFASSDTINIW--------FCSLDVSASSRMVVTGDNVG 231
Query: 139 FLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGS 198
+ L++ + + + +H+K KV + NP L + D +IWD+R++ +
Sbjct: 232 NVILLN--MDGKELWNLRMHKK--KVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKA 287
Query: 199 S-LCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHL 257
S L LPH+ VN+A FSP G+++LTT Q + +R++ + D P I H H +HL
Sbjct: 288 SFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSA--SQWDCPLGLIPHPHRHFQHL 345
Query: 258 TPFRAEWDPKDPSESLAVIGRYISENYNGAA---LHPIDFIDITTGQLVAEVMDPNITTI 314
TP +A W P+ +L V+GRY N+ L ID D +G+++ ++ DP + I
Sbjct: 346 TPIKAAWHPR---YNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGI 402
Query: 315 SPVNKLHPRDDVLASGSSRSIFIWRPKE 342
S +N+ +P D LAS I IW +E
Sbjct: 403 SSLNEFNPMGDTLASAMGYHILIWSQQE 430
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 150 bits (380), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 98/328 (29%), Positives = 161/328 (49%), Gaps = 23/328 (7%)
Query: 21 RRVTCLEFHPTNNHILLSGDKKGQVGVWDF-YKVSEKIVYGNIHSCIVNNIRFNPTNDGT 79
RR T L +HPT+ + G K G + +W+F K + G + ++FNP N
Sbjct: 121 RRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQ 180
Query: 80 VYAASSDGTVSCTDLETGLALSLMNVNP-NGWHGPRTWRMLYGMDINPEKGVVLVADNFG 138
YA+S +GT D + + + + N W +D++ +V+ DN G
Sbjct: 181 FYASSMEGTTRLQDFKGNILRVFASSDTINIW--------FCSLDVSASSRMVVTGDNVG 232
Query: 139 FLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGS 198
+ L++ + + + +H+K KV + NP L + D +IWD+R++ +
Sbjct: 233 NVILLN--MDGKELWNLRMHKK--KVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKA 288
Query: 199 S-LCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHL 257
S L LPH+ VN+A FSP G+++LTT Q + +R++ + D P I H H +HL
Sbjct: 289 SFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSA--SQWDCPLGLIPHPHRHFQHL 346
Query: 258 TPFRAEWDPKDPSESLAVIGRYISENYNGAA---LHPIDFIDITTGQLVAEVMDPNITTI 314
TP +A W P+ +L V+GRY N+ L ID D +G+++ ++ DP + I
Sbjct: 347 TPIKAAWHPR---YNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGI 403
Query: 315 SPVNKLHPRDDVLASGSSRSIFIWRPKE 342
S +N+ +P D LAS I IW +E
Sbjct: 404 SSLNEFNPMGDTLASAMGYHILIWSQEE 431
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 130 bits (327), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 98/323 (30%), Positives = 156/323 (48%), Gaps = 23/323 (7%)
Query: 21 RRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEK--IVYGNIHSCIVNNIRFNPTNDG 78
RRVT LE+HPT+ + G K G + +WD Y V K + G + ++FN N
Sbjct: 74 RRVTSLEWHPTHPTTVAVGSKGGDIILWD-YDVQNKTSFIQGMGPGDAITGMKFNQFNTN 132
Query: 79 TVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYG-MDINPEKGVVLVADNF 137
++ +S G + D + + +W Y +D++ + ++ D+
Sbjct: 133 QLFVSSIRGATTLRDFSGSVIQVFAKTD--------SWDYWYCCVDVSVSRQMLATGDST 184
Query: 138 GFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRL-EA 196
G L L+ + E + H+ +KV NP L+ + D ++WD+R + +
Sbjct: 185 GRLLLLGLDGHEIFKEKL--HK--AKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDK 240
Query: 197 GSSLCDLPHKRVVNSAYFSPSGS-KILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNR 255
S + ++PH++ VN+AYF+P+ S K+LTT Q N +R++ S + P + I+H H +
Sbjct: 241 NSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSY--DWSKPDQIIIHPHRQFQ 298
Query: 256 HLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTIS 315
HLTP +A W P L V GRY + ID D +G LV ++ DPN I
Sbjct: 299 HLTPIKATWHPM---YDLIVAGRYPDDQLLLNDKRTIDIYDANSGGLVHQLRDPNAAGII 355
Query: 316 PVNKLHPRDDVLASGSSRSIFIW 338
+NK P DVLASG +I IW
Sbjct: 356 SLNKFSPTGDVLASGMGFNILIW 378
Score = 31.2 bits (69), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 17 RYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVY--GNIHSCIVNNIRFNP 74
+ H +VT EF+P + ++ + V +WD + +K Y H VN FNP
Sbjct: 201 KLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNP 260
Query: 75 TN 76
T+
Sbjct: 261 TD 262
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 130 bits (327), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 98/323 (30%), Positives = 156/323 (48%), Gaps = 23/323 (7%)
Query: 21 RRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEK--IVYGNIHSCIVNNIRFNPTNDG 78
RRVT LE+HPT+ + G K G + +WD Y V K + G + ++FN N
Sbjct: 73 RRVTSLEWHPTHPTTVAVGSKGGDIILWD-YDVQNKTSFIQGMGPGDAITGMKFNQFNTN 131
Query: 79 TVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYG-MDINPEKGVVLVADNF 137
++ +S G + D + + +W Y +D++ + ++ D+
Sbjct: 132 QLFVSSIRGATTLRDFSGSVIQVFAKTD--------SWDYWYCCVDVSVSRQMLATGDST 183
Query: 138 GFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRL-EA 196
G L L+ + E + H+ +KV NP L+ + D ++WD+R + +
Sbjct: 184 GRLLLLGLDGHEIFKEKL--HK--AKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDK 239
Query: 197 GSSLCDLPHKRVVNSAYFSPSGS-KILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNR 255
S + ++PH++ VN+AYF+P+ S K+LTT Q N +R++ S + P + I+H H +
Sbjct: 240 NSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSY--DWSKPDQIIIHPHRQFQ 297
Query: 256 HLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTIS 315
HLTP +A W P L V GRY + ID D +G LV ++ DPN I
Sbjct: 298 HLTPIKATWHPM---YDLIVAGRYPDDQLLLNDKRTIDIYDANSGGLVHQLRDPNAAGII 354
Query: 316 PVNKLHPRDDVLASGSSRSIFIW 338
+NK P DVLASG +I IW
Sbjct: 355 SLNKFSPTGDVLASGMGFNILIW 377
Score = 31.6 bits (70), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 17 RYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVY--GNIHSCIVNNIRFNP 74
+ H +VT EF+P + ++ + V +WD + +K Y H VN FNP
Sbjct: 200 KLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNP 259
Query: 75 TN 76
T+
Sbjct: 260 TD 261
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 96/213 (45%), Gaps = 32/213 (15%)
Query: 148 NSRSGEAILIHRKGSKVVGL-HCNPIQPELLLSCGN-DHFARIWDIRRLEAGSSLCDLPH 205
NS +GE + + + S+ V H LLL+ G+ D F ++WD+ + E +++ H
Sbjct: 691 NSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTM--FGH 748
Query: 206 KRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWD 265
VN FSP + + S D L++WD+ N R+ ++ F +L
Sbjct: 749 TNSVNHCRFSPDDKLLASCSADGTLKLWDATSAN----ERKSINVKQFFLNL-------- 796
Query: 266 PKDPSESLAVIGRYISENYNG-----AALHPIDFIDITTGQLVAEVMDPNITTI-----S 315
+DP E + VI + S + +G AA + I DI T L+ E+ + +TI S
Sbjct: 797 -EDPQEDMEVIVKCCSWSADGARIMVAAKNKIFLFDIHTSGLLGEIHTGHHSTIQYCDFS 855
Query: 316 PVNKLHPRDDVLASGSSRSIFIWRPKEKSELVE 348
P N L + + S + +W +S++ +
Sbjct: 856 PQNHL-----AVVALSQYCVELWNTDSRSKVAD 883
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 97/223 (43%), Gaps = 15/223 (6%)
Query: 19 HSRRVTCLEFHPTNNHILL-SGDKKGQVGVWDF-YKVSEKIVYGNIHSCIVNNIRFNPTN 76
HS +V C F +++H+LL +G + +WD K ++G+ +S VN+ RF+P +
Sbjct: 704 HSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTMFGHTNS--VNHCRFSP-D 760
Query: 77 DGTVYAASSDGTVSCTDLETGLALSLMNVNP---NGWHGPRTWRMLYGMDINPEKGVVLV 133
D + + S+DGT+ D + +NV N ++ G ++
Sbjct: 761 DKLLASCSADGTLKLWDATSANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARIM 820
Query: 134 ADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRR 193
++L D T+ GE IH + Q L + + + +W+
Sbjct: 821 VAAKNKIFLFDIHTSGLLGE---IHTGHHSTIQYCDFSPQNHLAVVALSQYCVELWNT-- 875
Query: 194 LEAGSSLCDLP-HKRVVNSAYFSPSGSKILTTSQDNRLRIWDS 235
++ S + D H V+ FSP GS LT+S D +R+W++
Sbjct: 876 -DSRSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWET 917
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 54/241 (22%), Positives = 101/241 (41%), Gaps = 33/241 (13%)
Query: 2 KPAHVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVS-EKIVYG 60
KP V P+ + H++ V+ ++F P N L S + +W Y EK + G
Sbjct: 29 KPTPVKPNYALKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISG 87
Query: 61 NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLY 120
H ++++ ++ ++ + +AS D T+ D+ +G L + + N ++
Sbjct: 88 --HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSN---------YVF 135
Query: 121 GMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQP------ 174
+ NP+ +++ + + D +T K K + H +P+
Sbjct: 136 CCNFNPQSNLIVSGSFDESVRIWDVKTG-----------KCLKTLPAHSDPVSAVHFNRD 184
Query: 175 -ELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIW 233
L++S D RIWD + +L D V+ FSP+G IL + DN L++W
Sbjct: 185 GSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLW 243
Query: 234 D 234
D
Sbjct: 244 D 244
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 205 HKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLD 241
H + V+S FSP+G + ++S D ++IW + G +
Sbjct: 46 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE 82
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 54/241 (22%), Positives = 101/241 (41%), Gaps = 33/241 (13%)
Query: 2 KPAHVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVS-EKIVYG 60
KP V P+ + H++ V+ ++F P N L S + +W Y EK + G
Sbjct: 27 KPTPVKPNYALKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISG 85
Query: 61 NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLY 120
H ++++ ++ ++ + +AS D T+ D+ +G L + + N ++
Sbjct: 86 --HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSN---------YVF 133
Query: 121 GMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQP------ 174
+ NP+ +++ + + D +T K K + H +P+
Sbjct: 134 CCNFNPQSNLIVSGSFDESVRIWDVKTG-----------KCLKTLPAHSDPVSAVHFNRD 182
Query: 175 -ELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIW 233
L++S D RIWD + +L D V+ FSP+G IL + DN L++W
Sbjct: 183 GSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLW 241
Query: 234 D 234
D
Sbjct: 242 D 242
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 205 HKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLD 241
H + V+S FSP+G + ++S D ++IW + G +
Sbjct: 44 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE 80
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/241 (22%), Positives = 101/241 (41%), Gaps = 33/241 (13%)
Query: 2 KPAHVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVS-EKIVYG 60
KP V P+ + H++ V+ ++F P N L S + +W Y EK + G
Sbjct: 11 KPTPVKPNYALKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISG 69
Query: 61 NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLY 120
H ++++ ++ ++ + +AS D T+ D+ +G L + + N ++
Sbjct: 70 --HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSN---------YVF 117
Query: 121 GMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQP------ 174
+ NP+ +++ + + D +T K K + H +P+
Sbjct: 118 CCNFNPQSNLIVSGSFDESVRIWDVKTG-----------KCLKTLPAHSDPVSAVHFNRD 166
Query: 175 -ELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIW 233
L++S D RIWD + +L D V+ FSP+G IL + DN L++W
Sbjct: 167 GSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLW 225
Query: 234 D 234
D
Sbjct: 226 D 226
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 205 HKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLD 241
H + V+S FSP+G + ++S D ++IW + G +
Sbjct: 28 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE 64
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/241 (22%), Positives = 101/241 (41%), Gaps = 33/241 (13%)
Query: 2 KPAHVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVS-EKIVYG 60
KP V P+ + H++ V+ ++F P N L S + +W Y EK + G
Sbjct: 10 KPTPVKPNYALKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISG 68
Query: 61 NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLY 120
H ++++ ++ ++ + +AS D T+ D+ +G L + + N ++
Sbjct: 69 --HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSN---------YVF 116
Query: 121 GMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQP------ 174
+ NP+ +++ + + D +T K K + H +P+
Sbjct: 117 CCNFNPQSNLIVSGSFDESVRIWDVKTG-----------KCLKTLPAHSDPVSAVHFNRD 165
Query: 175 -ELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIW 233
L++S D RIWD + +L D V+ FSP+G IL + DN L++W
Sbjct: 166 GSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLW 224
Query: 234 D 234
D
Sbjct: 225 D 225
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 205 HKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLD 241
H + V+S FSP+G + ++S D ++IW + G +
Sbjct: 27 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE 63
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/241 (22%), Positives = 101/241 (41%), Gaps = 33/241 (13%)
Query: 2 KPAHVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVS-EKIVYG 60
KP V P+ + H++ V+ ++F P N L S + +W Y EK + G
Sbjct: 11 KPTPVKPNYALKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISG 69
Query: 61 NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLY 120
H ++++ ++ ++ + +AS D T+ D+ +G L + + N ++
Sbjct: 70 --HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSN---------YVF 117
Query: 121 GMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQP------ 174
+ NP+ +++ + + D +T K K + H +P+
Sbjct: 118 CCNFNPQSNLIVSGSFDESVRIWDVKTG-----------KCLKTLPAHSDPVSAVHFNRD 166
Query: 175 -ELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIW 233
L++S D RIWD + +L D V+ FSP+G IL + DN L++W
Sbjct: 167 GSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLW 225
Query: 234 D 234
D
Sbjct: 226 D 226
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 205 HKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLD 241
H + V+S FSP+G + ++S D ++IW + G +
Sbjct: 28 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE 64
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/241 (22%), Positives = 101/241 (41%), Gaps = 33/241 (13%)
Query: 2 KPAHVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVS-EKIVYG 60
KP V P+ + H++ V+ ++F P N L S + +W Y EK + G
Sbjct: 11 KPTPVKPNYALKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISG 69
Query: 61 NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLY 120
H ++++ ++ ++ + +AS D T+ D+ +G L + + N ++
Sbjct: 70 --HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSN---------YVF 117
Query: 121 GMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQP------ 174
+ NP+ +++ + + D +T K K + H +P+
Sbjct: 118 CCNFNPQSNLIVSGSFDESVRIWDVKTG-----------KCLKTLPAHSDPVSAVHFNRD 166
Query: 175 -ELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIW 233
L++S D RIWD + +L D V+ FSP+G IL + DN L++W
Sbjct: 167 GSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLW 225
Query: 234 D 234
D
Sbjct: 226 D 226
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 205 HKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLD 241
H + V+S FSP+G + ++S D ++IW + G +
Sbjct: 28 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE 64
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/241 (22%), Positives = 101/241 (41%), Gaps = 33/241 (13%)
Query: 2 KPAHVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVS-EKIVYG 60
KP V P+ + H++ V+ ++F P N L S + +W Y EK + G
Sbjct: 1 KPTPVKPNYALKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISG 59
Query: 61 NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLY 120
H ++++ ++ ++ + +AS D T+ D+ +G L + + N ++
Sbjct: 60 --HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSN---------YVF 107
Query: 121 GMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQP------ 174
+ NP+ +++ + + D +T K K + H +P+
Sbjct: 108 CCNFNPQSNLIVSGSFDESVRIWDVKTG-----------KCLKTLPAHSDPVSAVHFNRD 156
Query: 175 -ELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIW 233
L++S D RIWD + +L D V+ FSP+G IL + DN L++W
Sbjct: 157 GSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLW 215
Query: 234 D 234
D
Sbjct: 216 D 216
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 205 HKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLD 241
H + V+S FSP+G + ++S D ++IW + G +
Sbjct: 18 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE 54
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/241 (22%), Positives = 101/241 (41%), Gaps = 33/241 (13%)
Query: 2 KPAHVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVS-EKIVYG 60
KP V P+ + H++ V+ ++F P N L S + +W Y EK + G
Sbjct: 5 KPTPVKPNYALKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISG 63
Query: 61 NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLY 120
H ++++ ++ ++ + +AS D T+ D+ +G L + + N ++
Sbjct: 64 --HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSN---------YVF 111
Query: 121 GMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQP------ 174
+ NP+ +++ + + D +T K K + H +P+
Sbjct: 112 CCNFNPQSNLIVSGSFDESVRIWDVKTG-----------KCLKTLPAHSDPVSAVHFNRD 160
Query: 175 -ELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIW 233
L++S D RIWD + +L D V+ FSP+G IL + DN L++W
Sbjct: 161 GSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLW 219
Query: 234 D 234
D
Sbjct: 220 D 220
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 205 HKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLD 241
H + V+S FSP+G + ++S D ++IW + G +
Sbjct: 22 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE 58
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/241 (22%), Positives = 101/241 (41%), Gaps = 33/241 (13%)
Query: 2 KPAHVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVS-EKIVYG 60
KP V P+ + H++ V+ ++F P N L S + +W Y EK + G
Sbjct: 5 KPTPVKPNYALKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISG 63
Query: 61 NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLY 120
H ++++ ++ ++ + +AS D T+ D+ +G L + + N ++
Sbjct: 64 --HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSN---------YVF 111
Query: 121 GMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQP------ 174
+ NP+ +++ + + D +T K K + H +P+
Sbjct: 112 CCNFNPQSNLIVSGSFDESVRIWDVKTG-----------KCLKTLPAHSDPVSAVHFNRD 160
Query: 175 -ELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIW 233
L++S D RIWD + +L D V+ FSP+G IL + DN L++W
Sbjct: 161 GSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLW 219
Query: 234 D 234
D
Sbjct: 220 D 220
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 205 HKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLD 241
H + V+S FSP+G + ++S D ++IW + G +
Sbjct: 22 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE 58
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/241 (22%), Positives = 101/241 (41%), Gaps = 33/241 (13%)
Query: 2 KPAHVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVS-EKIVYG 60
KP V P+ + H++ V+ ++F P N L S + +W Y EK + G
Sbjct: 6 KPTPVKPNYALKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISG 64
Query: 61 NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLY 120
H ++++ ++ ++ + +AS D T+ D+ +G L + + N ++
Sbjct: 65 --HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSN---------YVF 112
Query: 121 GMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQP------ 174
+ NP+ +++ + + D +T K K + H +P+
Sbjct: 113 CCNFNPQSNLIVSGSFDESVRIWDVKTG-----------KCLKTLPAHSDPVSAVHFNRD 161
Query: 175 -ELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIW 233
L++S D RIWD + +L D V+ FSP+G IL + DN L++W
Sbjct: 162 GSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLW 220
Query: 234 D 234
D
Sbjct: 221 D 221
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 205 HKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLD 241
H + V+S FSP+G + ++S D ++IW + G +
Sbjct: 23 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE 59
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/241 (22%), Positives = 101/241 (41%), Gaps = 33/241 (13%)
Query: 2 KPAHVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVS-EKIVYG 60
KP V P+ + H++ V+ ++F P N L S + +W Y EK + G
Sbjct: 22 KPTPVKPNYALKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISG 80
Query: 61 NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLY 120
H ++++ ++ ++ + +AS D T+ D+ +G L + + N ++
Sbjct: 81 --HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSN---------YVF 128
Query: 121 GMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQP------ 174
+ NP+ +++ + + D +T K K + H +P+
Sbjct: 129 CCNFNPQSNLIVSGSFDESVRIWDVKTG-----------KCLKTLPAHSDPVSAVHFNRD 177
Query: 175 -ELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIW 233
L++S D RIWD + +L D V+ FSP+G IL + DN L++W
Sbjct: 178 GSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLW 236
Query: 234 D 234
D
Sbjct: 237 D 237
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 205 HKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLD 241
H + V+S FSP+G + ++S D ++IW + G +
Sbjct: 39 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE 75
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/241 (22%), Positives = 102/241 (42%), Gaps = 33/241 (13%)
Query: 2 KPAHVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVS-EKIVYG 60
KP V P+ + H++ V+ ++F P N L S + +W Y EK + G
Sbjct: 8 KPTPVKPNYALMFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISG 66
Query: 61 NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLY 120
H ++++ ++ ++ + +AS D T+ D+ +G L + + N ++
Sbjct: 67 --HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSN---------YVF 114
Query: 121 GMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQP------ 174
+ NP+ +++ + + D +T G + K + H +P+
Sbjct: 115 CCNFNPQSNLIVSGSFDESVRIWDVKT----GMCL-------KTLPAHSDPVSAVHFNRD 163
Query: 175 -ELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIW 233
L++S D RIWD + +L D V+ FSP+G IL + DN L++W
Sbjct: 164 GSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLW 222
Query: 234 D 234
D
Sbjct: 223 D 223
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 205 HKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLD 241
H + V+S FSP+G + ++S D ++IW + G +
Sbjct: 25 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE 61
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/241 (22%), Positives = 102/241 (42%), Gaps = 33/241 (13%)
Query: 2 KPAHVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVS-EKIVYG 60
KP V P+ + H++ V+ ++F P N L S + +W Y EK + G
Sbjct: 8 KPTPVKPNYALMFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISG 66
Query: 61 NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLY 120
H ++++ ++ ++ + +AS D T+ D+ +G L + + N ++
Sbjct: 67 --HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSN---------YVF 114
Query: 121 GMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQP------ 174
+ NP+ +++ + + D +T G + K + H +P+
Sbjct: 115 CCNFNPQSNLIVSGSFDESVRIWDVKT----GMCL-------KTLPAHSDPVSAVHFNRD 163
Query: 175 -ELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIW 233
L++S D RIWD + +L D V+ FSP+G IL + DN L++W
Sbjct: 164 GSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNDLKLW 222
Query: 234 D 234
D
Sbjct: 223 D 223
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 205 HKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLD 241
H + V+S FSP+G + ++S D ++IW + G +
Sbjct: 25 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE 61
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 67/145 (46%), Gaps = 21/145 (14%)
Query: 176 LLLSCG-NDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWD 234
LLL+ G ND F ++WD+ + E +++ H VN FSP + + S D LR+WD
Sbjct: 721 LLLATGSNDFFLKLWDLNQKECRNTM--FGHTNSVNHCRFSPDDELLASCSADGTLRLWD 778
Query: 235 SIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNG-----AAL 289
V S + + + R +DP E + VI + S + +G AA
Sbjct: 779 -------------VRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAK 825
Query: 290 HPIDFIDITTGQLVAEVMDPNITTI 314
+ + DI T L+AE+ + +TI
Sbjct: 826 NKVLLFDIHTSGLLAEIHTGHHSTI 850
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 101/240 (42%), Gaps = 49/240 (20%)
Query: 19 HSRRVTCLEFHPTNNHILL-SGDKKGQVGVWDF-YKVSEKIVYGNIHSCIVNNIRFNPTN 76
HS +V C F +NH+LL +G + +WD K ++G+ +S VN+ RF+P +
Sbjct: 705 HSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNS--VNHCRFSP-D 761
Query: 77 DGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN 136
D + + S+DGT+ D+ + +NV R + PE V+V
Sbjct: 762 DELLASCSADGTLRLWDVRSANERKSINVK----------RFFLSSEDPPEDVEVIVK-- 809
Query: 137 FGFLYLVDARTNSRSGEAILIHRKGSKVV-GLHCNPIQPEL-------LLSCG---NDHF 185
+ S G+ I++ K ++ +H + + E+ + C DH
Sbjct: 810 --------CCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHL 861
Query: 186 A---------RIWDI-RRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDS 235
A +W+I RL+ H V+ FSP GS LT S D +R+W++
Sbjct: 862 AVIALSQYCVELWNIDSRLKVADC---RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWET 918
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 53/253 (20%), Positives = 96/253 (37%), Gaps = 42/253 (16%)
Query: 15 VIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYG------------NI 62
V R H + L+ P +LSG G + ++D S + Y ++
Sbjct: 38 VERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDV 97
Query: 63 HSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGM 122
H V +++ P + G ++S D T+ D T + N +Y
Sbjct: 98 HRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFE----------ETVYSH 147
Query: 123 DINP---EKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLS 179
++P + +V V + L D ++ S S + HR+ +++ + +P +L +
Sbjct: 148 HMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCS-HILQGHRQ--EILAVSWSPRYDYILAT 204
Query: 180 CGNDHFARIWDIRRLEA--------------GSSLCDLPHKRVVNSAYFSPSGSKILTTS 225
D ++WD+RR + H VN F+ G +LT
Sbjct: 205 ASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVG 264
Query: 226 QDNRLRIWDSIFG 238
DNR+R+W+S G
Sbjct: 265 TDNRMRLWNSSNG 277
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 67/145 (46%), Gaps = 21/145 (14%)
Query: 176 LLLSCG-NDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWD 234
LLL+ G ND F ++WD+ + E +++ H VN FSP + + S D LR+WD
Sbjct: 714 LLLATGSNDFFLKLWDLNQKECRNTM--FGHTNSVNHCRFSPDDELLASCSADGTLRLWD 771
Query: 235 SIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNG-----AAL 289
V S + + + R +DP E + VI + S + +G AA
Sbjct: 772 -------------VRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAK 818
Query: 290 HPIDFIDITTGQLVAEVMDPNITTI 314
+ + DI T L+AE+ + +TI
Sbjct: 819 NKVLLFDIHTSGLLAEIHTGHHSTI 843
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 101/240 (42%), Gaps = 49/240 (20%)
Query: 19 HSRRVTCLEFHPTNNHILL-SGDKKGQVGVWDF-YKVSEKIVYGNIHSCIVNNIRFNPTN 76
HS +V C F +NH+LL +G + +WD K ++G+ +S VN+ RF+P +
Sbjct: 698 HSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNS--VNHCRFSP-D 754
Query: 77 DGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN 136
D + + S+DGT+ D+ + +NV R + PE V+V
Sbjct: 755 DELLASCSADGTLRLWDVRSANERKSINVK----------RFFLSSEDPPEDVEVIVK-- 802
Query: 137 FGFLYLVDARTNSRSGEAILIHRKGSKVV-GLHCNPIQPEL-------LLSCG---NDHF 185
+ S G+ I++ K ++ +H + + E+ + C DH
Sbjct: 803 --------CCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHL 854
Query: 186 A---------RIWDI-RRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDS 235
A +W+I RL+ H V+ FSP GS LT S D +R+W++
Sbjct: 855 AVIALSQYCVELWNIDSRLKVADC---RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWET 911
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 95/224 (42%), Gaps = 33/224 (14%)
Query: 19 HSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVS-EKIVYGNIHSCIVNNIRFNPTND 77
H++ V+ ++F P N L S + +W Y EK + G H ++++ ++ ++
Sbjct: 21 HTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISG--HKLGISDVAWS-SDS 76
Query: 78 GTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF 137
+ +AS D T+ D+ +G L + + N ++ + NP+ +++
Sbjct: 77 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSN---------YVFCCNFNPQSNLIVSGSFD 127
Query: 138 GFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQP-------ELLLSCGNDHFARIWD 190
+ + D +T K K + H +P+ L++S D RIWD
Sbjct: 128 ESVRIWDVKTG-----------KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 176
Query: 191 IRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWD 234
+ +L D V+ FSP+G IL + DN L++WD
Sbjct: 177 TASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLWD 219
Score = 35.0 bits (79), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 52/226 (23%), Positives = 96/226 (42%), Gaps = 22/226 (9%)
Query: 15 VIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNP 74
++ HS V C F+P +N +++SG V +WD K + + HS V+ + FN
Sbjct: 101 TLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAVHFN- 157
Query: 75 TNDGTVYAASS-DGTVSCTDLETGLALSLM--NVNPNGWHGPRTWRMLYGMDINPEKGVV 131
DG++ +SS DG D +G L + + NP P ++ + +P +
Sbjct: 158 -RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP-----PVSF-----VKFSPNGKYI 206
Query: 132 LVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDI 191
L A L L D + + + H+ + + + + ++S D+ IW++
Sbjct: 207 LAATLDNTLKLWD-YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 265
Query: 192 RRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTS--QDNRLRIWDS 235
+ E L H VV S P+ + I + + D +++W S
Sbjct: 266 QTKEIVQKL--QGHTDVVISTACHPTENIIASAALENDKTIKLWKS 309
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 205 HKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLD 241
H + V+S FSP+G + ++S D ++IW + G +
Sbjct: 21 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE 57
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 95/224 (42%), Gaps = 33/224 (14%)
Query: 19 HSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVS-EKIVYGNIHSCIVNNIRFNPTND 77
H++ V+ ++F P N L S + +W Y EK + G H ++++ ++ ++
Sbjct: 25 HTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISG--HKLGISDVAWS-SDS 80
Query: 78 GTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF 137
+ +AS D T+ D+ +G L + + N ++ + NP+ +++
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSN---------YVFCCNFNPQSNLIVSGSFD 131
Query: 138 GFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQP-------ELLLSCGNDHFARIWD 190
+ + D +T K K + H +P+ L++S D RIWD
Sbjct: 132 ESVRIWDVKTG-----------KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Query: 191 IRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWD 234
+ +L D V+ FSP+G IL + DN L++WD
Sbjct: 181 TASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLWD 223
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 49/107 (45%), Gaps = 16/107 (14%)
Query: 15 VIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNP 74
++ HS V C F+P +N +++SG V +WD K + + HS V+ + FN
Sbjct: 105 TLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAVHFN- 161
Query: 75 TNDGTVYAASS-DGTVSCTDLETGLAL-----------SLMNVNPNG 109
DG++ +SS DG D +G L S + +PNG
Sbjct: 162 -RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG 207
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 205 HKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLD 241
H + V+S FSP+G + ++S D ++IW + G +
Sbjct: 25 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE 61
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 95/224 (42%), Gaps = 33/224 (14%)
Query: 19 HSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVS-EKIVYGNIHSCIVNNIRFNPTND 77
H++ V+ ++F P N L S + +W Y EK + G H ++++ ++ ++
Sbjct: 25 HTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISG--HKLGISDVAWS-SDS 80
Query: 78 GTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF 137
+ +AS D T+ D+ +G L + + N ++ + NP+ +++
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSN---------YVFCCNFNPQSNLIVSGSFD 131
Query: 138 GFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQP-------ELLLSCGNDHFARIWD 190
+ + D +T K K + H +P+ L++S D RIWD
Sbjct: 132 ESVRIWDVKTG-----------KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Query: 191 IRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWD 234
+ +L D V+ FSP+G IL + DN L++WD
Sbjct: 181 TASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLWD 223
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 49/107 (45%), Gaps = 16/107 (14%)
Query: 15 VIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNP 74
++ HS V C F+P +N +++SG V +WD K + + HS V+ + FN
Sbjct: 105 TLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAVHFN- 161
Query: 75 TNDGTVYAASS-DGTVSCTDLETGLAL-----------SLMNVNPNG 109
DG++ +SS DG D +G L S + +PNG
Sbjct: 162 -RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG 207
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 205 HKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLD 241
H + V+S FSP+G + ++S D ++IW + G +
Sbjct: 25 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE 61
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/224 (21%), Positives = 95/224 (42%), Gaps = 33/224 (14%)
Query: 19 HSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVS-EKIVYGNIHSCIVNNIRFNPTND 77
H++ V+ ++F P N L + + +W Y EK + G H ++++ ++ ++
Sbjct: 25 HTKAVSSVKFSP-NGEWLAASSADKLIKIWGAYDGKFEKTISG--HKLGISDVAWS-SDS 80
Query: 78 GTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF 137
+ +AS D T+ D+ +G L + + N ++ + NP+ +++
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSN---------YVFCCNFNPQSNLIVSGSFD 131
Query: 138 GFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQP-------ELLLSCGNDHFARIWD 190
+ + D +T K K + H +P+ L++S D RIWD
Sbjct: 132 ESVRIWDVKTG-----------KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Query: 191 IRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWD 234
+ +L D V+ FSP+G IL + DN L++WD
Sbjct: 181 TASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLWD 223
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 52/226 (23%), Positives = 96/226 (42%), Gaps = 22/226 (9%)
Query: 15 VIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNP 74
++ HS V C F+P +N +++SG V +WD K + + HS V+ + FN
Sbjct: 105 TLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAVHFN- 161
Query: 75 TNDGTVYAASS-DGTVSCTDLETGLALSLM--NVNPNGWHGPRTWRMLYGMDINPEKGVV 131
DG++ +SS DG D +G L + + NP P ++ + +P +
Sbjct: 162 -RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP-----PVSF-----VKFSPNGKYI 210
Query: 132 LVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDI 191
L A L L D + + + H+ + + + + ++S D+ IW++
Sbjct: 211 LAATLDNTLKLWD-YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 269
Query: 192 RRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTS--QDNRLRIWDS 235
+ E L H VV S P+ + I + + D +++W S
Sbjct: 270 QTKEIVQKL--QGHTDVVISTACHPTENIIASAALENDKTIKLWKS 313
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 205 HKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLD 241
H + V+S FSP+G + +S D ++IW + G +
Sbjct: 25 HTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFE 61
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/241 (23%), Positives = 94/241 (39%), Gaps = 24/241 (9%)
Query: 10 QVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKI---------VYG 60
++ C + H V + P N HI+ + V V+D+ K K +
Sbjct: 116 KIECEIKINHEGEVNRARYXPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRL 175
Query: 61 NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETG------LALSLMNVNPNGWHGPR 114
H + +N G + +AS D TV D+ G + + +
Sbjct: 176 RGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDV 235
Query: 115 TWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQP 174
W +L+ E VAD+ L + D R+N+ S + L+ ++V L NP
Sbjct: 236 AWHLLH------ESLFGSVADDQK-LXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSE 288
Query: 175 ELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTS-QDNRLRIW 233
+L + D +WD+R L+ + HK + ++SP IL +S D RL +W
Sbjct: 289 FILATGSADKTVALWDLRNLKLKLHTFE-SHKDEIFQVHWSPHNETILASSGTDRRLNVW 347
Query: 234 D 234
D
Sbjct: 348 D 348
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 39/80 (48%)
Query: 15 VIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNP 74
++ H+ V CL F+P + IL +G V +WD + K+ H + + ++P
Sbjct: 270 LVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSP 329
Query: 75 TNDGTVYAASSDGTVSCTDL 94
N+ + ++ +D ++ DL
Sbjct: 330 HNETILASSGTDRRLNVWDL 349
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/241 (23%), Positives = 94/241 (39%), Gaps = 24/241 (9%)
Query: 10 QVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKI---------VYG 60
++ C + H V + P N HI+ + V V+D+ K K +
Sbjct: 116 KIECEIKINHEGEVNRARYMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRL 175
Query: 61 NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETG------LALSLMNVNPNGWHGPR 114
H + +N G + +AS D TV D+ G + + +
Sbjct: 176 RGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDV 235
Query: 115 TWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQP 174
W +L+ E VAD+ L + D R+N+ S + L+ ++V L NP
Sbjct: 236 AWHLLH------ESLFGSVADDQK-LMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSE 288
Query: 175 ELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTS-QDNRLRIW 233
+L + D +WD+R L+ + HK + ++SP IL +S D RL +W
Sbjct: 289 FILATGSADKTVALWDLRNLKLKLHTFE-SHKDEIFQVHWSPHNETILASSGTDRRLNVW 347
Query: 234 D 234
D
Sbjct: 348 D 348
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 39/80 (48%)
Query: 15 VIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNP 74
++ H+ V CL F+P + IL +G V +WD + K+ H + + ++P
Sbjct: 270 LVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSP 329
Query: 75 TNDGTVYAASSDGTVSCTDL 94
N+ + ++ +D ++ DL
Sbjct: 330 HNETILASSGTDRRLNVWDL 349
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 91/223 (40%), Gaps = 28/223 (12%)
Query: 15 VIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNP 74
+ HS V + F P I + D K V +W+ + + G HS VN + F P
Sbjct: 216 TLTGHSSSVRGVAFSPDGQTIASASDDK-TVKLWNRNGQLLQTLTG--HSSSVNGVAFRP 272
Query: 75 TNDG-TVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLV 133
DG T+ +AS D TV + L +L H W G+ +P+ +
Sbjct: 273 --DGQTIASASDDKTVKLWNRNGQLLQTLTG------HSSSVW----GVAFSPDGQTIAS 320
Query: 134 ADNFGFLYLVDARTNSRSGEAI-LIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIR 192
A + + L + R+G+ + + S V G+ +P + + S +D ++W+
Sbjct: 321 ASDDKTVKLWN-----RNGQHLQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWN-- 372
Query: 193 RLEAGSSLCDLP-HKRVVNSAYFSPSGSKILTTSQDNRLRIWD 234
G L L H V FSP G I + S D +++W+
Sbjct: 373 --RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 413
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 91/223 (40%), Gaps = 28/223 (12%)
Query: 15 VIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNP 74
+ HS V + F P I + D K V +W+ + + G HS V + F+P
Sbjct: 339 TLTGHSSSVWGVAFSPDGQTIASASDDK-TVKLWNRNGQLLQTLTG--HSSSVRGVAFSP 395
Query: 75 TNDG-TVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLV 133
DG T+ +AS D TV + L +L H W G+ +P+ +
Sbjct: 396 --DGQTIASASDDKTVKLWNRNGQLLQTLTG------HSSSVW----GVAFSPDDQTIAS 443
Query: 134 ADNFGFLYLVDARTNSRSGEAI-LIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIR 192
A + + L + R+G+ + + S V G+ +P + + S +D ++W+
Sbjct: 444 ASDDKTVKLWN-----RNGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWN-- 495
Query: 193 RLEAGSSLCDLP-HKRVVNSAYFSPSGSKILTTSQDNRLRIWD 234
G L L H V FSP G I + S D +++W+
Sbjct: 496 --RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 536
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 91/223 (40%), Gaps = 28/223 (12%)
Query: 15 VIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNP 74
+ HS V + F P I + D K V +W+ + + G HS V + F+P
Sbjct: 93 TLTGHSSSVRGVAFSPDGQTIASASDDK-TVKLWNRNGQLLQTLTG--HSSSVWGVAFSP 149
Query: 75 TNDG-TVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLV 133
DG T+ +AS D TV + L +L H W G+ +P+ +
Sbjct: 150 --DGQTIASASDDKTVKLWNRNGQLLQTLTG------HSSSVW----GVAFSPDGQTIAS 197
Query: 134 ADNFGFLYLVDARTNSRSGEAI-LIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIR 192
A + + L + R+G+ + + S V G+ +P + + S +D ++W+
Sbjct: 198 ASDDKTVKLWN-----RNGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWN-- 249
Query: 193 RLEAGSSLCDLP-HKRVVNSAYFSPSGSKILTTSQDNRLRIWD 234
G L L H VN F P G I + S D +++W+
Sbjct: 250 --RNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWN 290
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 51/222 (22%), Positives = 92/222 (41%), Gaps = 26/222 (11%)
Query: 15 VIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNP 74
+ HS V + F P I + D K V +W+ + + G HS V + F+P
Sbjct: 380 TLTGHSSSVRGVAFSPDGQTIASASDDK-TVKLWNRNGQLLQTLTG--HSSSVWGVAFSP 436
Query: 75 TNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVA 134
+D T+ +AS D TV + L +L + + + G+ +P+ + A
Sbjct: 437 -DDQTIASASDDKTVKLWNRNGQLLQTLTGHSSS----------VRGVAFSPDGQTIASA 485
Query: 135 DNFGFLYLVDARTNSRSGEAI-LIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRR 193
+ + L + R+G+ + + S V G+ +P + + S +D ++W+
Sbjct: 486 SDDKTVKLWN-----RNGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWN--- 536
Query: 194 LEAGSSLCDLP-HKRVVNSAYFSPSGSKILTTSQDNRLRIWD 234
G L L H V FSP G I + S D +++W+
Sbjct: 537 -RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 52/223 (23%), Positives = 92/223 (41%), Gaps = 28/223 (12%)
Query: 15 VIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNP 74
+ HS V + F P I + D K V +W+ + + G HS V + F+P
Sbjct: 298 TLTGHSSSVWGVAFSPDGQTIASASDDK-TVKLWNRNGQHLQTLTG--HSSSVWGVAFSP 354
Query: 75 TNDG-TVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLV 133
DG T+ +AS D TV + L +L + + + G+ +P+ +
Sbjct: 355 --DGQTIASASDDKTVKLWNRNGQLLQTLTGHSSS----------VRGVAFSPDGQTIAS 402
Query: 134 ADNFGFLYLVDARTNSRSGEAI-LIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIR 192
A + + L + R+G+ + + S V G+ +P + + S +D ++W+
Sbjct: 403 ASDDKTVKLWN-----RNGQLLQTLTGHSSSVWGVAFSP-DDQTIASASDDKTVKLWN-- 454
Query: 193 RLEAGSSLCDLP-HKRVVNSAYFSPSGSKILTTSQDNRLRIWD 234
G L L H V FSP G I + S D +++W+
Sbjct: 455 --RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 495
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 36/72 (50%)
Query: 25 CLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAAS 84
C++ HP H++ +G + G + +WD + + + H + + F+P+N ++ S
Sbjct: 241 CVDRHPNQQHVVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHFHPSNPEHLFTCS 300
Query: 85 SDGTVSCTDLET 96
DG++ D T
Sbjct: 301 EDGSLWHWDAST 312
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 52/124 (41%), Gaps = 17/124 (13%)
Query: 119 LYGMDINP-EKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELL 177
L+ +D +P ++ VV G L + D R + + H +++ +H +P PE L
Sbjct: 239 LHCVDRHPNQQHVVATGGQDGMLSIWDVRQGTMPVSLLKAHE--AEMWEVHFHPSNPEHL 296
Query: 178 LSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSG--SKILTTSQDNRLRIWDS 235
+C D WD + D+P K S+ F G S L+ S N+ + S
Sbjct: 297 FTCSEDGSLWHWD--------ASTDVPEK----SSLFHQGGRSSTFLSHSISNQANVHQS 344
Query: 236 IFGN 239
+ +
Sbjct: 345 VISS 348
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 39/79 (49%)
Query: 16 IRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPT 75
+ H+ V CL F+P + IL +G V +WD + K+ H + ++++P
Sbjct: 269 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH 328
Query: 76 NDGTVYAASSDGTVSCTDL 94
N+ + ++ +D ++ DL
Sbjct: 329 NETILASSGTDRRLNVWDL 347
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 77/191 (40%), Gaps = 34/191 (17%)
Query: 70 IRFNPTNDGTVYAASSDGTVSCTDLE---------------TGLALSLMNVNPNGWHGPR 114
+ +NP G + +AS D T+ D+ TG + +V
Sbjct: 183 LSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDV--------- 233
Query: 115 TWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQP 174
+W +L+ E VAD+ L + D R+N+ S + + ++V L NP
Sbjct: 234 SWHLLH------ESLFGSVADDQK-LMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSE 286
Query: 175 ELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTS-QDNRLRIW 233
+L + D +WD+R L+ + HK + +SP IL +S D RL +W
Sbjct: 287 FILATGSADKTVALWDLRNLKLKLHSFE-SHKDEIFQVQWSPHNETILASSGTDRRLNVW 345
Query: 234 D-SIFGNLDSP 243
D S G SP
Sbjct: 346 DLSKIGEEQSP 356
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 39/96 (40%), Gaps = 7/96 (7%)
Query: 166 GLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLP-----HKRVVNSAYFSPSGSK 220
GL NP LLS +DH +WDI + + D H VV +
Sbjct: 182 GLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHES 241
Query: 221 IL-TTSQDNRLRIWDSIFGNLDSPSREI-VHSHDFN 254
+ + + D +L IWD+ N PS + H+ + N
Sbjct: 242 LFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVN 277
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/236 (19%), Positives = 102/236 (43%), Gaps = 25/236 (10%)
Query: 12 NCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDF------YKVSEKIVYGNIHSC 65
N ++ H+ V + + P N++++ SG + V VW+ + E ++ H+
Sbjct: 73 NVPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTK 132
Query: 66 IVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLM--NVNPNGWHGPRTWRMLYGMD 123
V + ++PT + +A D + D+ TG A+ + +V+P+ +Y +D
Sbjct: 133 RVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPD---------TIYSVD 183
Query: 124 INPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGND 183
+ + ++ + + +++ R + E H +G++ V H + +L+ G
Sbjct: 184 WSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPH-EGTRPV--HAVFVSEGKILTTGFS 240
Query: 184 HFAR----IWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKI-LTTSQDNRLRIWD 234
+ +WD + LE SL +L V +F P + + L D+ +R ++
Sbjct: 241 RMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFE 296
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 12/88 (13%)
Query: 6 VIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYG-NIHS 64
V+P + + H++RV + +HPT ++LLS + VWD + + G ++H
Sbjct: 117 VLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHP 176
Query: 65 CIVNNIRFNPTNDGTVYAASSDGTVSCT 92
+ ++ + S DG + CT
Sbjct: 177 DTIYSVDW-----------SRDGALICT 193
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 42/93 (45%), Gaps = 9/93 (9%)
Query: 2 KPAHVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGN 61
KP+H + H+ V CL F+P + IL +G V +WD + K+
Sbjct: 268 KPSHTV---------DAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFE 318
Query: 62 IHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDL 94
H + ++++P N+ + ++ +D + DL
Sbjct: 319 SHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 351
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 71/172 (41%), Gaps = 15/172 (8%)
Query: 70 IRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRT------WRMLYGMD 123
+ +NP +G + +AS D T+ D+ + N + G W +L+
Sbjct: 187 LSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLH--- 243
Query: 124 INPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGND 183
E VAD+ L + D R N+ S + + ++V L NP +L + D
Sbjct: 244 ---ESLFGSVADDQK-LMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSAD 299
Query: 184 HFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTS-QDNRLRIWD 234
+WD+R L+ + HK + +SP IL +S D RL +WD
Sbjct: 300 KTVALWDLRNLKLKLHSFE-SHKDEIFQVQWSPHNETILASSGTDRRLHVWD 350
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 39/96 (40%), Gaps = 7/96 (7%)
Query: 166 GLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLP-----HKRVVNS-AYFSPSGS 219
GL NP LLS +DH +WDI + D H VV A+ S
Sbjct: 186 GLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHES 245
Query: 220 KILTTSQDNRLRIWDSIFGNLDSPSREI-VHSHDFN 254
+ + D +L IWD+ N PS + H+ + N
Sbjct: 246 LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN 281
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 42/93 (45%), Gaps = 9/93 (9%)
Query: 2 KPAHVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGN 61
KP+H + H+ V CL F+P + IL +G V +WD + K+
Sbjct: 270 KPSHTV---------DAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFE 320
Query: 62 IHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDL 94
H + ++++P N+ + ++ +D + DL
Sbjct: 321 SHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 353
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 71/172 (41%), Gaps = 15/172 (8%)
Query: 70 IRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRT------WRMLYGMD 123
+ +NP +G + +AS D T+ D+ + N + G W +L+
Sbjct: 189 LSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLH--- 245
Query: 124 INPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGND 183
E VAD+ L + D R N+ S + + ++V L NP +L + D
Sbjct: 246 ---ESLFGSVADDQK-LMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSAD 301
Query: 184 HFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTS-QDNRLRIWD 234
+WD+R L+ + HK + +SP IL +S D RL +WD
Sbjct: 302 KTVALWDLRNLKLKLHSFE-SHKDEIFQVQWSPHNETILASSGTDRRLHVWD 352
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 39/96 (40%), Gaps = 7/96 (7%)
Query: 166 GLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLP-----HKRVVNS-AYFSPSGS 219
GL NP LLS +DH +WDI + D H VV A+ S
Sbjct: 188 GLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHES 247
Query: 220 KILTTSQDNRLRIWDSIFGNLDSPSREI-VHSHDFN 254
+ + D +L IWD+ N PS + H+ + N
Sbjct: 248 LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN 283
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 42/93 (45%), Gaps = 9/93 (9%)
Query: 2 KPAHVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGN 61
KP+H + H+ V CL F+P + IL +G V +WD + K+
Sbjct: 272 KPSHTV---------DAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFE 322
Query: 62 IHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDL 94
H + ++++P N+ + ++ +D + DL
Sbjct: 323 SHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 355
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 71/172 (41%), Gaps = 15/172 (8%)
Query: 70 IRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRT------WRMLYGMD 123
+ +NP +G + +AS D T+ D+ + N + G W +L+
Sbjct: 191 LSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLH--- 247
Query: 124 INPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGND 183
E VAD+ L + D R N+ S + + ++V L NP +L + D
Sbjct: 248 ---ESLFGSVADDQK-LMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSAD 303
Query: 184 HFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTS-QDNRLRIWD 234
+WD+R L+ + HK + +SP IL +S D RL +WD
Sbjct: 304 KTVALWDLRNLKLKLHSFE-SHKDEIFQVQWSPHNETILASSGTDRRLHVWD 354
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 39/96 (40%), Gaps = 7/96 (7%)
Query: 166 GLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLP-----HKRVVNS-AYFSPSGS 219
GL NP LLS +DH +WDI + D H VV A+ S
Sbjct: 190 GLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHES 249
Query: 220 KILTTSQDNRLRIWDSIFGNLDSPSREI-VHSHDFN 254
+ + D +L IWD+ N PS + H+ + N
Sbjct: 250 LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN 285
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/244 (22%), Positives = 96/244 (39%), Gaps = 39/244 (15%)
Query: 9 DQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVN 68
D V C ++ HS +V L++ P N I+ S + G++ VW+ S+K +H V
Sbjct: 55 DLVCCRTLQGHSGKVYSLDWTPEKNWIV-SASQDGRLIVWNAL-TSQKTHAIKLHCPWVM 112
Query: 69 NIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEK 128
F P +V+C L++ A S+ N++ R M + K
Sbjct: 113 ECAFAPNGQ----------SVACGGLDS--ACSIFNLSS---QADRDGNMPVSRVLTGHK 157
Query: 129 GVVLVADNFGFLYLVDARTNSRSGEAILI------------------HRKGSKVVGLHCN 170
G A + ++ + R + SG+ + + V+ L N
Sbjct: 158 GY---ASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSIN 214
Query: 171 PIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRL 230
+ + +S D R+WD+R + + + H+ +NS F P G + T S D
Sbjct: 215 SLNANMFISGSCDTTVRLWDLR-ITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTC 273
Query: 231 RIWD 234
R++D
Sbjct: 274 RLFD 277
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 3/91 (3%)
Query: 19 HSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDG 78
H+ V L + N ++ +SG V +WD S + + H +N+++F P DG
Sbjct: 204 HTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFP--DG 261
Query: 79 TVYA-ASSDGTVSCTDLETGLALSLMNVNPN 108
+ S DGT D+ TG L + N P+
Sbjct: 262 QRFGTGSDDGTCRLFDMRTGHQLQVYNREPD 292
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/233 (21%), Positives = 88/233 (37%), Gaps = 46/233 (19%)
Query: 19 HSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDG 78
H++ V + F P N I+ SG + + VW+ + H+ V+ +RF+P+ D
Sbjct: 108 HTKDVLSVAFSPDNRQIV-SGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDA 166
Query: 79 TVYAASS-DGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF 137
V + D V DL TG ++ + + N + + ++P+ + +D
Sbjct: 167 PVIVSGGWDNLVKVWDLATGRLVTDLKGHTN---------YVTSVTVSPDGSLCASSDKD 217
Query: 138 GFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAG 197
G L D GEA+ G+ + + +P R W E G
Sbjct: 218 GVARLWDLT----KGEALSEMAAGAPINQICFSP--------------NRYWMCAATEKG 259
Query: 198 SSLCDLPHKRVVN-----------------SAYFSPSGSKILTTSQDNRLRIW 233
+ DL +K ++ S +S GS + + DN +R+W
Sbjct: 260 IRIFDLENKDIIVELAPEHQGSKKIVPECVSIAWSADGSTLYSGYTDNVIRVW 312
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 8/92 (8%)
Query: 152 GEAILIHRKGSKVVGLHCNPIQPEL----LLSCGNDHFARIWDIRRLEAGSSLCDLP-HK 206
GE + +G+ + C P L ++S G D+ ++WD L G + DL H
Sbjct: 140 GECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWD---LATGRLVTDLKGHT 196
Query: 207 RVVNSAYFSPSGSKILTTSQDNRLRIWDSIFG 238
V S SP GS ++ +D R+WD G
Sbjct: 197 NYVTSVTVSPDGSLCASSDKDGVARLWDLTKG 228
Score = 35.8 bits (81), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 176 LLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWD 234
+S DH R+W+++ + L H + V S FSP +I++ +DN LR+W+
Sbjct: 81 FAVSASWDHSLRLWNLQNGQCQYKF--LGHTKDVLSVAFSPDNRQIVSGGRDNALRVWN 137
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 6/106 (5%)
Query: 161 GSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLP-HKRVVNSAYFSPSGS 219
G+ + L +P P LLLS DH R+W+I+ + + H+ V SA + G
Sbjct: 151 GNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGE 210
Query: 220 KILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLT--PFRAE 263
KI++ D+ L++W N I S+D+N + T PF ++
Sbjct: 211 KIMSCGMDHSLKLWRI---NSKRMMNAIKESYDYNPNKTNRPFISQ 253
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 6/106 (5%)
Query: 161 GSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLP-HKRVVNSAYFSPSGS 219
G+ + L +P P LLLS DH R+W+I+ + + H+ V SA + G
Sbjct: 110 GNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGE 169
Query: 220 KILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLT--PFRAE 263
KI++ D+ L++W N I S+D+N + T PF ++
Sbjct: 170 KIMSCGMDHSLKLWRI---NSKRMMNAIKESYDYNPNKTNRPFISQ 212
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 6/106 (5%)
Query: 161 GSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLP-HKRVVNSAYFSPSGS 219
G+ + L +P P LLLS DH R+W+I+ + + H+ V SA + G
Sbjct: 114 GNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGE 173
Query: 220 KILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLT--PFRAE 263
KI++ D+ L++W N I S+D+N + T PF ++
Sbjct: 174 KIMSCGMDHSLKLWRI---NSKRMMNAIKESYDYNPNKTNRPFISQ 216
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 6/106 (5%)
Query: 161 GSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLP-HKRVVNSAYFSPSGS 219
G+ + L +P P LLLS DH R+W+I+ + + H+ V SA + G
Sbjct: 115 GNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGE 174
Query: 220 KILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLT--PFRAE 263
KI++ D+ L++W N I S+D+N + T PF ++
Sbjct: 175 KIMSCGMDHSLKLWRI---NSKRMMNAIKESYDYNPNKTNRPFISQ 217
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 6/106 (5%)
Query: 161 GSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLP-HKRVVNSAYFSPSGS 219
G+ + L +P P LLLS DH R+W+I+ + + H+ V SA + G
Sbjct: 114 GNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGE 173
Query: 220 KILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLT--PFRAE 263
KI++ D+ L++W N I S+D+N + T PF ++
Sbjct: 174 KIMSCGMDHSLKLWRI---NSKRMMNAIKESYDYNPNKTNRPFISQ 216
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 46/236 (19%), Positives = 102/236 (43%), Gaps = 25/236 (10%)
Query: 12 NCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDF------YKVSEKIVYGNIHSC 65
N ++ H+ V + + P N++++ SG + V VW+ + E ++ H+
Sbjct: 73 NVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTK 132
Query: 66 IVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLM--NVNPNGWHGPRTWRMLYGMD 123
V + ++PT + +A D + D+ TG A+ + +V+P+ +Y +D
Sbjct: 133 RVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPD---------TIYSVD 183
Query: 124 INPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGND 183
+ + ++ + + +++ R + E H +G++ V H + +L+ G
Sbjct: 184 WSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPH-EGTRPV--HAVFVSEGKILTTGFS 240
Query: 184 HFAR----IWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKI-LTTSQDNRLRIWD 234
+ +WD + LE SL +L V +F P + + L D+ +R ++
Sbjct: 241 RMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFE 296
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 12/88 (13%)
Query: 6 VIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYG-NIHS 64
V+P + + H++RV + +HPT ++LLS + VWD + + G ++H
Sbjct: 117 VLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHP 176
Query: 65 CIVNNIRFNPTNDGTVYAASSDGTVSCT 92
+ ++ + S DG + CT
Sbjct: 177 DTIYSVDW-----------SRDGALICT 193
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 36.2 bits (82), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 169 CNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDN 228
C + L + D RIWDI + L H++ + S + PSG K+++ S D
Sbjct: 130 CFSPDGKFLATGAEDRLIRIWDIENRKIVMIL--QGHEQDIYSLDYFPSGDKLVSGSGDR 187
Query: 229 RLRIWD 234
+RIWD
Sbjct: 188 TVRIWD 193
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 44/102 (43%), Gaps = 7/102 (6%)
Query: 150 RSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWD------IRRLEAGSSLCDL 203
R+G+ L V + +P + + + D R+WD + RL++ +
Sbjct: 195 RTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENE-SGT 253
Query: 204 PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSR 245
HK V S F+ G +++ S D +++W+ N S S+
Sbjct: 254 GHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSK 295
Score = 28.1 bits (61), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 209 VNSAYFSPSGSKILTTSQDNRLRIWD 234
+ S FSP G + T ++D +RIWD
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWD 151
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 35.8 bits (81), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Query: 33 NHILLSGDKKGQVGVWDFY--KVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVS 90
++IL+SG+ V +WD + + + N H V ++FN V +S DGTV
Sbjct: 329 DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN---FVITSSDDGTVK 385
Query: 91 CTDLETGLALSLMNVNPNGWHGPRTWRM 118
DL+TG + + +G G WR+
Sbjct: 386 LWDLKTGEFIRNLVTLESGGSGGVVWRI 413
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 40/188 (21%), Positives = 69/188 (36%), Gaps = 32/188 (17%)
Query: 157 IHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLP-HKRVVNSAYFS 215
+H V + C ++S D ++WD E + L L H V S F
Sbjct: 232 LHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDP---ETETCLHTLQGHTNRVYSLQFD 288
Query: 216 PSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAV 275
G +++ S D +R+WD GN +H+ ++ LT
Sbjct: 289 --GIHVVSGSLDTSIRVWDVETGN-------CIHTLTGHQSLTS---------------- 323
Query: 276 IGRYISEN--YNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGSSR 333
G + +N +G A + DI TGQ + + PN + ++ V+ S
Sbjct: 324 -GMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDG 382
Query: 334 SIFIWRPK 341
++ +W K
Sbjct: 383 TVKLWDLK 390
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 35.8 bits (81), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 80/216 (37%), Gaps = 58/216 (26%)
Query: 19 HSRRVTCLEFHPT-NNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTND 77
H V CL+ P+ + +SG + VWD + + + H VN++R+ P+ D
Sbjct: 195 HGADVLCLDLAPSETGNTFVSGGCDKKAMVWDM-RSGQCVQAFETHESDVNSVRYYPSGD 253
Query: 78 GTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF 137
+A+ SD LY D+ ++ V +
Sbjct: 254 --AFASGSDDATC---------------------------RLY--DLRADREVAIY---- 278
Query: 138 GFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAG 197
S E+I+ G+ V + LL + ND+ +WD+ +
Sbjct: 279 -------------SKESIIF---GASSVDF---SLSGRLLFAGYNDYTINVWDVLKGSRV 319
Query: 198 SSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIW 233
S L H+ V++ SP G+ + S D+ LR+W
Sbjct: 320 SIL--FGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
Score = 35.8 bits (81), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 47/228 (20%), Positives = 87/228 (38%), Gaps = 26/228 (11%)
Query: 15 VIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNP 74
++ H +V C+++ I+ S + G+V VWD + +++ + +
Sbjct: 59 TLKGHGNKVLCMDWCKDKRRIV-SSSQDGKVIVWDSFTTNKE-----------HAVTMPC 106
Query: 75 TNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRM------LYGMDINPEK 128
T A S ++C L+ ++ + + N + + L
Sbjct: 107 TWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSD 166
Query: 129 GVVLVADNFGFLYLVDARTNSRSGEAIL-IHRKGSKVVGLHCNPIQP-ELLLSCGNDHFA 186
+L A G L D SG+ + H G+ V+ L P + +S G D A
Sbjct: 167 MQILTASGDGTCALWDVE----SGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKA 222
Query: 187 RIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWD 234
+WD+R + + H+ VNS + PSG + S D R++D
Sbjct: 223 MVWDMRSGQCVQAF--ETHESDVNSVRYYPSGDAFASGSDDATCRLYD 268
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 35.4 bits (80), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 175 ELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWD 234
+LL SC D ++WD + E ++ H V+S P+G I++ S+D +++W+
Sbjct: 163 KLLASCSADMTIKLWDFQGFECIRTM--HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWE 220
Query: 235 SIFG 238
G
Sbjct: 221 VQTG 224
Score = 34.7 bits (78), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 175 ELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWD 234
+ +LSC +D R+WD + +L H+ V S F + ++T S D +++W+
Sbjct: 351 KFILSCADDKTLRVWDYKNKRCMKTLN--AHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 63/285 (22%), Positives = 104/285 (36%), Gaps = 62/285 (21%)
Query: 3 PAHVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVS-EKIVYGN 61
P IP + H VT + FHP + +++S + + VWD+ E+ + G
Sbjct: 91 PKEWIPRPPEKYALSGHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFERTLKG- 148
Query: 62 IHSCIVNNIRFNPTNDGTVYAA-SSDGTVSCTDLETGLALSLM----------NVNPNGW 110
H+ V +I F+ + G + A+ S+D T+ D + + M ++ PNG
Sbjct: 149 -HTDSVQDISFD--HSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGD 205
Query: 111 H--------GPRTWRMLYGMDINPEKG----VVLVADNFGFLYLVDARTNSRSGEAILIH 158
H + W + G + G V +V N L+ + +N ++ ++
Sbjct: 206 HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGT-LIASCSNDQTVRVWVVA 264
Query: 159 RKGSKVV------GLHCNPIQPE----------------------LLLSCGNDHFARIWD 190
K K + C PE LLS D ++WD
Sbjct: 265 TKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWD 324
Query: 191 IRRLEAGSSLCDL-PHKRVVNSAYFSPSGSKILTTSQDNRLRIWD 234
+ G L L H V F G IL+ + D LR+WD
Sbjct: 325 V---STGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWD 366
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 57/261 (21%), Positives = 94/261 (36%), Gaps = 44/261 (16%)
Query: 11 VNCAVIRYHSRRVTCL--EFHPTNNH---ILLSGDKKGQVGVWDFYKVSEKIVYGNIHSC 65
V ++ HS VT + F N +L+SG + V +W Y+ + +G H
Sbjct: 12 VKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKA 71
Query: 66 I------VNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRML 119
+ V+++ + N + ++S D T+ DL TG + + +
Sbjct: 72 LTGHNHFVSDLALSQENCFAI-SSSWDKTLRLWDLRTGTTYKRFVGHQS---------EV 121
Query: 120 YGMDINPEKGVVLVA---------DNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCN 170
Y + +P+ +L A + G A + S +
Sbjct: 122 YSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQ 181
Query: 171 PIQPELLLSCGNDHFARIWD----IRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQ 226
P P S G D ++W+ IR H+ VN SP+G I T +
Sbjct: 182 PFAP-YFASVGWDGRLKVWNTNFQIRYTFKA-------HESNVNHLSISPNGKYIATGGK 233
Query: 227 DNRLRIWDSIFGNLDSPSREI 247
D +L IWD + NL P RE
Sbjct: 234 DKKLLIWDIL--NLTYPQREF 252
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
Query: 176 LLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDS 235
+S D R+WD+R + H+ V S FSP +IL+ + +++W+
Sbjct: 90 FAISSSWDKTLRLWDLRTGTTYKRF--VGHQSEVYSVAFSPDNRQILSAGAEREIKLWN- 146
Query: 236 IFGNLDSPSREIVHSHDF 253
I G S E + D+
Sbjct: 147 ILGECKFSSAEKENHSDW 164
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 48/127 (37%), Gaps = 9/127 (7%)
Query: 129 GVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARI 188
GV L +N LY T + L G V + P P+++LS D +
Sbjct: 10 GVDLGTEN---LYFQSMMTEQMTLRGTLKGHNG-WVTQIATTPQFPDMILSASRDKTIIM 65
Query: 189 WDIRRLEAGSSLCDLP---HKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSR 245
W + R E + H V+ S G L+ S D LR+WD G + R
Sbjct: 66 WKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGT--TTRR 123
Query: 246 EIVHSHD 252
+ H+ D
Sbjct: 124 FVGHTKD 130
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 19 HSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNP 74
H++ V + F N I+ SG + + +W+ V + V HS V+ +RF+P
Sbjct: 127 HTKDVLSVAFSSDNRQIV-SGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSP 181
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 52/244 (21%), Positives = 91/244 (37%), Gaps = 53/244 (21%)
Query: 14 AVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDF------YKVSEKIVYGNIHSCIV 67
+R H+ VT + N I++S + + +W Y V+++ + G HS V
Sbjct: 376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTG--HSHFV 433
Query: 68 NNIRFNPTNDGT-VYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINP 126
++ ++DG + S DG + DL G++ +
Sbjct: 434 EDVVL--SSDGQFALSGSWDGELRLWDLAAGVSTRRF--------------------VGH 471
Query: 127 EKGVVLVADNFGFLYLVDAR----------------TNSRSGEAILIHRKGSKVVGLHCN 170
K V+ VA + +V A T S GE HR V N
Sbjct: 472 TKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEG---HRDWVSCVRFSPN 528
Query: 171 PIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRL 230
+QP ++ S D ++W++ + S+L H V++ SP GS + +D +
Sbjct: 529 TLQPTIV-SASWDKTVKVWNLSNCKLRSTLAG--HTGYVSTVAVSPDGSLCASGGKDGVV 585
Query: 231 RIWD 234
+WD
Sbjct: 586 LLWD 589
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 175 ELLLSCGNDHFARIWDIRRLEAG-SSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIW 233
+ LS D R+WD L AG S+ + H + V S FS +I++ S+D +++W
Sbjct: 443 QFALSGSWDGELRLWD---LAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLW 499
Query: 234 DSI 236
+++
Sbjct: 500 NTL 502
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 7/62 (11%)
Query: 176 LLLSCGNDHFARIWDIRRLEAGSSLC----DLPHKRVVNSAYFSPSGSKILTTSQDNRLR 231
LL SCG D RIW E S +C H+R V +SP G+ + + S D
Sbjct: 30 LLASCGGDRRIRIWGT---EGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTC 86
Query: 232 IW 233
IW
Sbjct: 87 IW 88
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 43/102 (42%), Gaps = 9/102 (8%)
Query: 135 DNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRL 194
D +++ VD + H + K V H P Q ELL S D +++ R
Sbjct: 126 DKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWH--PSQ-ELLASASYDDTVKLY---RE 179
Query: 195 EAGSSLCDLP---HKRVVNSAYFSPSGSKILTTSQDNRLRIW 233
E +C H+ V S F PSG ++ + S D +RIW
Sbjct: 180 EEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 221
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 5/92 (5%)
Query: 164 VVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLP---HKRVVNSAYFSPSGSK 220
V + P P+++LS D +W + R E + H V+ S G
Sbjct: 18 VTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQF 77
Query: 221 ILTTSQDNRLRIWDSIFGNLDSPSREIVHSHD 252
L+ S D LR+WD G + R + H+ D
Sbjct: 78 ALSGSWDGTLRLWDLTTGT--TTRRFVGHTKD 107
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 19 HSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNP 74
H++ V + F N I+ SG + + +W+ V + V HS V+ +RF+P
Sbjct: 104 HTKDVLSVAFSSDNRQIV-SGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSP 158
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 37/95 (38%), Gaps = 11/95 (11%)
Query: 164 VVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLP------HKRVVNSAYFSPS 217
V L + QP LLLS D W +L +P H +V +
Sbjct: 20 VTSLATSAGQPNLLLSASRDKTLISW---KLTGDDQKFGVPVRSFKGHSHIVQDCTLTAD 76
Query: 218 GSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHD 252
G+ L+ S D LR+WD G ++ R + H D
Sbjct: 77 GAYALSASWDKTLRLWDVATG--ETYQRFVGHKSD 109
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 13/58 (22%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 177 LLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWD 234
++S GND + W++ + + + + H +N+ SP G+ I + +D + +W+
Sbjct: 169 IISAGNDKMVKAWNLNQFQIEADF--IGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 37/95 (38%), Gaps = 11/95 (11%)
Query: 164 VVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLP------HKRVVNSAYFSPS 217
V L + QP LLLS D W +L +P H +V +
Sbjct: 14 VTSLATSAGQPNLLLSASRDKTLISW---KLTGDDQKFGVPVRSFKGHSHIVQDCTLTAD 70
Query: 218 GSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHD 252
G+ L+ S D LR+WD G ++ R + H D
Sbjct: 71 GAYALSASWDKTLRLWDVATG--ETYQRFVGHKSD 103
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 13/58 (22%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 177 LLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWD 234
++S GND + W++ + + + + H +N+ SP G+ I + +D + +W+
Sbjct: 163 IISAGNDKMVKAWNLNQFQIEADF--IGHNSNINTLTASPDGTLIASAGKDGEIMLWN 218
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 37/95 (38%), Gaps = 11/95 (11%)
Query: 164 VVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLP------HKRVVNSAYFSPS 217
V L + QP LLLS D W +L +P H +V +
Sbjct: 20 VTSLATSAGQPNLLLSASRDKTLISW---KLTGDDQKFGVPVRSFKGHSHIVQDCTLTAD 76
Query: 218 GSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHD 252
G+ L+ S D LR+WD G ++ R + H D
Sbjct: 77 GAYALSASWDKTLRLWDVATG--ETYQRFVGHKSD 109
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 13/58 (22%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 177 LLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWD 234
++S GND + W++ + + + + H +N+ SP G+ I + +D + +W+
Sbjct: 169 IISAGNDKMVKAWNLNQFQIEADF--IGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 37/95 (38%), Gaps = 11/95 (11%)
Query: 164 VVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLP------HKRVVNSAYFSPS 217
V L + QP LLLS D W +L +P H +V +
Sbjct: 20 VTSLATSAGQPNLLLSASRDKTLISW---KLTGDDQKFGVPVRSFKGHSHIVQDCTLTAD 76
Query: 218 GSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHD 252
G+ L+ S D LR+WD G ++ R + H D
Sbjct: 77 GAYALSASWDKTLRLWDVATG--ETYQRFVGHKSD 109
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 13/58 (22%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 177 LLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWD 234
++S GND + W++ + + + + H +N+ SP G+ I + +D + +W+
Sbjct: 169 IISAGNDKMVKAWNLNQFQIEADF--IGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 37/95 (38%), Gaps = 11/95 (11%)
Query: 164 VVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLP------HKRVVNSAYFSPS 217
V L + QP LLLS D W +L +P H +V +
Sbjct: 20 VTSLATSAGQPNLLLSASRDKTLISW---KLTGDDQKFGVPVRSFKGHSHIVQDCTLTAD 76
Query: 218 GSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHD 252
G+ L+ S D LR+WD G ++ R + H D
Sbjct: 77 GAYALSASWDKTLRLWDVATG--ETYQRFVGHKSD 109
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 13/58 (22%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 177 LLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWD 234
++S GND + W++ + + + + H +N+ SP G+ I + +D + +W+
Sbjct: 169 IISAGNDKMVKAWNLNQFQIEADF--IGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 37/95 (38%), Gaps = 11/95 (11%)
Query: 164 VVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLP------HKRVVNSAYFSPS 217
V L + QP LLLS D W +L +P H +V +
Sbjct: 20 VTSLATSAGQPNLLLSASRDKTLISW---KLTGDDQKFGVPVRSFKGHSHIVQDCTLTAD 76
Query: 218 GSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHD 252
G+ L+ S D LR+WD G ++ R + H D
Sbjct: 77 GAYALSASWDKTLRLWDVATG--ETYQRFVGHKSD 109
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 13/58 (22%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 177 LLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWD 234
++S GND + W++ + + + + H +N+ SP G+ I + +D + +W+
Sbjct: 169 IISAGNDKXVKAWNLNQFQIEADF--IGHNSNINTLTASPDGTLIASAGKDGEIXLWN 224
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 52/227 (22%), Positives = 90/227 (39%), Gaps = 15/227 (6%)
Query: 10 QVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNN 69
QV I+ V +F N I++ D ++ V++ Y EK+V H + +
Sbjct: 45 QVEVRSIQVTETPVRAGKFIARKNWIIVGSDD-FRIRVFN-YNTGEKVVDFEAHPDYIRS 102
Query: 70 IRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKG 129
I +PT V + S D TV + E AL + G + M NP+
Sbjct: 103 IAVHPTKP-YVLSGSDDLTVKLWNWENNWALE------QTFEGHEHFVMCVAF--NPKDP 153
Query: 130 VVLVADNFGFLYLVDARTNSRSGEAILI-HRKGSKVVGLHCNPIQPELLLSCGNDHFARI 188
+ V + S + +G V + P +P +++ +D +I
Sbjct: 154 STFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKP-YMITASDDLTIKI 212
Query: 189 WDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDS 235
WD + ++L H V+ A F P+ I++ S+D L+IW+S
Sbjct: 213 WDYQTKSCVATLEG--HMSNVSFAVFHPTLPIIISGSEDGTLKIWNS 257
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 52/227 (22%), Positives = 90/227 (39%), Gaps = 15/227 (6%)
Query: 10 QVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNN 69
QV I+ V +F N I++ D ++ V++ Y EK+V H + +
Sbjct: 45 QVEVRSIQVTETPVRAGKFIARKNWIIVGSDD-FRIRVFN-YNTGEKVVDFEAHPDYIRS 102
Query: 70 IRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKG 129
I +PT V + S D TV + E AL + G + M NP+
Sbjct: 103 IAVHPTKP-YVLSGSDDLTVKLWNWENNWALE------QTFEGHEHFVMCVAF--NPKDP 153
Query: 130 VVLVADNFGFLYLVDARTNSRSGEAILI-HRKGSKVVGLHCNPIQPELLLSCGNDHFARI 188
+ V + S + +G V + P +P +++ +D +I
Sbjct: 154 STFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKP-YMITASDDLTIKI 212
Query: 189 WDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDS 235
WD + ++L H V+ A F P+ I++ S+D L+IW+S
Sbjct: 213 WDYQTKSCVATLEG--HMSNVSFAVFHPTLPIIISGSEDGTLKIWNS 257
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 158 HRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPS 217
+G V + P +P +++ +D +IWD + ++L H V+ A F P+
Sbjct: 183 QERGVNYVDYYPLPDKP-YMITASDDLTIKIWDYQTKSCVATLEG--HMSNVSFAVFHPT 239
Query: 218 GSKILTTSQDNRLRIWDS 235
I++ S+D L+IW+S
Sbjct: 240 LPIIISGSEDGTLKIWNS 257
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 158 HRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPS 217
+G V + P +P +++ +D +IWD + ++L H V+ A F P+
Sbjct: 183 QERGVNYVDYYPLPDKP-YMITASDDLTIKIWDYQTKSCVATLE--GHMSNVSFAVFHPT 239
Query: 218 GSKILTTSQDNRLRIWDS 235
I++ S+D L+IW+S
Sbjct: 240 LPIIISGSEDGTLKIWNS 257
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 190 DIRRLEAGSSL---CDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIW 233
DI+ L++ +L D H + F PSG ++++SQD +L+IW
Sbjct: 117 DIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIW 163
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 33/85 (38%), Gaps = 11/85 (12%)
Query: 175 ELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWD 234
E L+S D +IW ++ +L + H+ V G +L+ S D +R+W+
Sbjct: 149 EALISSSQDMQLKIWSVKDGSNPRTL--IGHRATVTDIAIIDRGRNVLSASLDGTIRLWE 206
Query: 235 SIFGNLDSPSREIVHSHDFNRHLTP 259
G H FNR P
Sbjct: 207 CGTG---------TTIHTFNRKENP 222
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 190 DIRRLEAGSSL---CDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIW 233
DI+ L++ +L D H + F PSG ++++SQD +L+IW
Sbjct: 120 DIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIW 166
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 33/85 (38%), Gaps = 11/85 (12%)
Query: 175 ELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWD 234
E L+S D +IW ++ +L + H+ V G +L+ S D +R+W+
Sbjct: 152 EALISSSQDMQLKIWSVKDGSNPRTL--IGHRATVTDIAIIDRGRNVLSASLDGTIRLWE 209
Query: 235 SIFGNLDSPSREIVHSHDFNRHLTP 259
G H FNR P
Sbjct: 210 CGTGTT---------IHTFNRKENP 225
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 51/235 (21%), Positives = 97/235 (41%), Gaps = 25/235 (10%)
Query: 14 AVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEK------IVYGNIHSCI- 66
A HS V ++F+ +++L SG G++ +WD K +E + G S +
Sbjct: 107 ARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVD 166
Query: 67 -VNNIRFNPTNDGTVYAASSDGTVSCTDLETGL-ALSLMNVNPNGWHGPRTWRMLYGMDI 124
V ++ +N + +A S S DL+ + L +PN G + + L ++
Sbjct: 167 EVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNS--GIK--QQLSVVEW 222
Query: 125 NPEKGVVLV----ADNFGFLYLVDARTNSRSGEAI-LIHRKGSKVVGLHCNPIQPELLLS 179
+P+ + +DN + + D R + + + H+KG ++ L LLLS
Sbjct: 223 HPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKG--ILSLDWCHQDEHLLLS 280
Query: 180 CGNDHFARIWDIRRLEAGSSLCDLPHK-RVVNSAYFSPSGSKILT-TSQDNRLRI 232
G D+ +W+ E+ L P + F+P + S DN++ +
Sbjct: 281 SGRDNTVLLWNP---ESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEV 332
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 58/251 (23%), Positives = 100/251 (39%), Gaps = 48/251 (19%)
Query: 147 TNSRSGEAIL--IHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEA-------- 196
+N R G L IH + G++C + ++S D+ +IWD LE
Sbjct: 114 SNWRCGRHSLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHT 173
Query: 197 GSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWD----SIFGNLDSPSREIVHSHD 252
GS LC +RV I+T S D+ +R+WD + L ++H
Sbjct: 174 GSVLCLQYDERV------------IITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRF 221
Query: 253 FNRHLTPFR-----AEWDPKDPSESLAVIGRYISENYNGAALHPIDFID--ITTGQLVAE 305
N + A WD P++ + R + + AA++ +DF D I +
Sbjct: 222 NNGMMVTCSKDRSIAVWDMASPTD---ITLRRVLVGHR-AAVNVVDFDDKYIVSASGDRT 277
Query: 306 VMDPNITTISPVNKLHP----------RDDVLASGSS-RSIFIWRPKEKSELVEQKEEMK 354
+ N +T V L+ RD ++ SGSS +I +W + + L + +
Sbjct: 278 IKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE 337
Query: 355 IIVCGKADKKQ 365
++ C + D K+
Sbjct: 338 LVRCIRFDNKR 348
Score = 31.2 bits (69), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 45/216 (20%), Positives = 89/216 (41%), Gaps = 27/216 (12%)
Query: 20 SRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVS-EKIVYGNIHSCIVNNIRFNPTNDG 78
S+ V CL++ ++ ++SG + + +WD + ++I+ G+ S + ++
Sbjct: 133 SKGVYCLQY---DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY-----DER 184
Query: 79 TVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFG 138
+ SSD TV D+ TG ++N + R GM + K D
Sbjct: 185 VIITGSSDSTVRVWDVNTG---EMLNTLIHHCEAVLHLRFNNGMMVTCSK------DRSI 235
Query: 139 FLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGS 198
++ + + T+ ++ HR VV + ++S D ++W+ E
Sbjct: 236 AVWDMASPTDITLRRVLVGHRAAVNVVDF-----DDKYIVSASGDRTIKVWNTSTCEFVR 290
Query: 199 SLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWD 234
+L HKR + A +++ S DN +R+WD
Sbjct: 291 TLNG--HKRGI--ACLQYRDRLVVSGSSDNTIRLWD 322
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 31.2 bits (69), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Query: 16 IRY-HSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNP 74
+RY H++ +T L + L S D +G + WD V+ ++H+ ++ I+
Sbjct: 319 VRYGHNKAITALS-SSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIK--T 375
Query: 75 TNDGTVYAASSD 86
T+ G ++ S D
Sbjct: 376 TSKGDLFTVSWD 387
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 199 SLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWD 234
SL ++ H V +SP G+KI + S D ++IW+
Sbjct: 232 SLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWN 267
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 11/91 (12%)
Query: 19 HSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDG 78
HS V C+ P + I LS + G++ +WD K I C + I PT+
Sbjct: 180 HSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPAT---RIDFCASDTI---PTS-- 231
Query: 79 TVYAASSDGTVSCTDLETGLALSLMNV-NPN 108
+ D T +C D ETG +SL+N+ NP+
Sbjct: 232 VTWHPEKDDTFACGD-ETG-NVSLVNIKNPD 260
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 54/231 (23%), Positives = 86/231 (37%), Gaps = 21/231 (9%)
Query: 7 IPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCI 66
+ Q + H RV CL + N H+L SG + G + D + +I HS
Sbjct: 163 VESQTKLRTMAGHQARVGCLSW---NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSE 219
Query: 67 VNNIRFNPTNDGTVYAAS-SDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDIN 125
V + + +DG A+ +D V D + + N N W
Sbjct: 220 VCGLAWR--SDGLQLASGGNDNVVQIWDARSSIP-KFTKTNHNAAVKAVAWCPWQSN--- 273
Query: 126 PEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCG-NDH 184
L+A G + N+ +G + GS+V L +P E++ + G D+
Sbjct: 274 ------LLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDN 327
Query: 185 FARIWDIRRLEAGSSLCDLP--HKRVVNSAYFSPSGSKILTTSQDNRLRIW 233
IW + D+P RV+ SA SP G + T + D L+ W
Sbjct: 328 NLSIWSYSS-SGLTKQVDIPAHDTRVLYSA-LSPDGRILSTAASDENLKFW 376
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
Query: 177 LLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTT---SQDNRLRIW 233
L S GND+ +IWD R + H V + + P S +L T + D ++ W
Sbjct: 232 LASGGNDNVVQIWDAR--SSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFW 289
Query: 234 DSIFG 238
++ G
Sbjct: 290 NAATG 294
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/91 (20%), Positives = 39/91 (42%), Gaps = 1/91 (1%)
Query: 7 IPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYG-NIHSC 65
+ QV + R H+ +VTC+ P + + LS + ++ +WD G +
Sbjct: 156 LAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGY 215
Query: 66 IVNNIRFNPTNDGTVYAASSDGTVSCTDLET 96
+ ++ ++P +GTVS D ++
Sbjct: 216 LPTSLAWHPQQSEVFVFGDENGTVSLVDTKS 246
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 198 SSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWD 234
+SL + H V S F+ SG + + D +LR WD
Sbjct: 283 ASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWD 319
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 198 SSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWD 234
+SL + H V S F+ SG + + D +LR WD
Sbjct: 293 ASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWD 329
>pdb|2I3S|A Chain A, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|C Chain C, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|E Chain E, Bub3 Complex With Bub1 Glebs Motif
Length = 349
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 67 VNNIRFNPTNDGTVYAASSDGTVSCTDLET 96
VN+I F+P + +Y A SDG +SC +L+T
Sbjct: 254 VNSIEFSPRH-KFLYTAGSDGIISCWNLQT 282
>pdb|1YFQ|A Chain A, High Resolution S. Cerevisiae Bub3 Mitotic Checkpoint
Protein
Length = 342
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 67 VNNIRFNPTNDGTVYAASSDGTVSCTDLET 96
VN+I F+P + +Y A SDG +SC +L+T
Sbjct: 254 VNSIEFSPRH-KFLYTAGSDGIISCWNLQT 282
>pdb|2I3T|A Chain A, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|C Chain C, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|E Chain E, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|G Chain G, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
Length = 341
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 67 VNNIRFNPTNDGTVYAASSDGTVSCTDLET 96
VN+I F+P + +Y A SDG +SC +L+T
Sbjct: 254 VNSIEFSPRH-KFLYTAGSDGIISCWNLQT 282
>pdb|1U4C|A Chain A, Structure Of Spindle Checkpoint Protein Bub3
pdb|1U4C|B Chain B, Structure Of Spindle Checkpoint Protein Bub3
Length = 349
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 67 VNNIRFNPTNDGTVYAASSDGTVSCTDLET 96
VN+I F+P + +Y A SDG +SC +L+T
Sbjct: 254 VNSIEFSPRH-KFLYTAGSDGIISCWNLQT 282
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,066,878
Number of Sequences: 62578
Number of extensions: 524120
Number of successful extensions: 1512
Number of sequences better than 100.0: 77
Number of HSP's better than 100.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 1115
Number of HSP's gapped (non-prelim): 250
length of query: 396
length of database: 14,973,337
effective HSP length: 101
effective length of query: 295
effective length of database: 8,652,959
effective search space: 2552622905
effective search space used: 2552622905
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)